# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|219850688|ref|YP_002465120.1| - 2.8e-19 68.9 0.2 6.3e-19 67.7 0.2 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|219850688|ref|YP_002465120.1| - 1.3e-12 48.2 0.0 2.8e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|219850688|ref|YP_002465120.1| - 4e-10 40.3 0.1 3.4e-09 37.3 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|219850688|ref|YP_002465120.1| - 5e-09 36.7 0.1 2.8e-08 34.2 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|219850688|ref|YP_002465120.1| - 5.7e-06 26.4 0.0 1.2e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|219850688|ref|YP_002465120.1| - 2.7e-05 23.6 0.0 9.9e-05 21.8 0.0 1.9 1 1 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|219850688|ref|YP_002465120.1| - 0.00011 22.2 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|219850688|ref|YP_002465120.1| - 0.0014 17.8 0.1 0.0046 16.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|219850688|ref|YP_002465120.1| - 0.0033 17.2 0.0 0.016 14.9 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain KAP_NTPase PF07693.14 gi|219850688|ref|YP_002465120.1| - 0.0049 16.1 0.2 2.2 7.4 0.0 2.3 1 1 0 2 2 2 2 KAP family P-loop domain DEAD PF00270.29 gi|219850688|ref|YP_002465120.1| - 0.0081 15.9 1.7 0.085 12.6 0.5 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|219850688|ref|YP_002465120.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_2 PF07724.14 gi|219850688|ref|YP_002465120.1| - 0.028 14.5 1.1 0.085 13.0 0.0 2.2 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|219850688|ref|YP_002465120.1| - 0.029 13.4 0.0 0.059 12.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_assoc_2 PF16193.5 gi|219850688|ref|YP_002465120.1| - 0.032 14.6 0.2 0.098 13.0 0.2 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Microtub_bd PF16796.5 gi|219850688|ref|YP_002465120.1| - 0.046 13.6 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 1 0 Microtubule binding AAA_30 PF13604.6 gi|219850688|ref|YP_002465120.1| - 0.056 13.2 0.1 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|219850688|ref|YP_002465120.1| - 0.061 13.0 0.4 0.17 11.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|219850688|ref|YP_002465120.1| - 0.089 13.2 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.12 gi|219850688|ref|YP_002465120.1| - 0.13 12.0 0.0 0.56 9.9 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AsnC_trans_reg PF01037.21 gi|219850689|ref|YP_002465121.1| - 7.2e-15 54.7 1.1 9.4e-15 54.4 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|219850689|ref|YP_002465121.1| - 2.2e-11 43.4 1.8 1e-10 41.3 2.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|219850689|ref|YP_002465121.1| - 2.7e-09 36.4 0.1 6.6e-09 35.2 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|219850689|ref|YP_002465121.1| - 0.00025 21.0 0.2 0.00071 19.5 0.2 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|219850689|ref|YP_002465121.1| - 0.0027 17.7 0.9 0.0046 17.0 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|219850689|ref|YP_002465121.1| - 0.005 16.7 0.5 0.011 15.6 0.2 1.7 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|219850689|ref|YP_002465121.1| - 0.0096 16.2 0.4 0.19 12.1 0.1 2.4 3 0 0 3 3 3 1 Transcriptional regulator DDRGK PF09756.9 gi|219850689|ref|YP_002465121.1| - 0.01 15.4 0.2 0.024 14.2 0.0 1.6 2 0 0 2 2 2 0 DDRGK domain MarR PF01047.22 gi|219850689|ref|YP_002465121.1| - 0.016 15.1 0.2 0.035 14.0 0.1 1.6 2 0 0 2 2 2 0 MarR family HTH_15 PF12324.8 gi|219850689|ref|YP_002465121.1| - 0.017 15.1 1.7 0.045 13.7 0.6 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_11 PF08279.12 gi|219850689|ref|YP_002465121.1| - 0.038 13.9 0.1 0.086 12.8 0.1 1.6 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.6 gi|219850689|ref|YP_002465121.1| - 0.058 13.1 0.4 0.1 12.3 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Phage_rep_org_N PF09681.10 gi|219850689|ref|YP_002465121.1| - 0.066 13.1 0.1 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DprA_WH PF17782.1 gi|219850689|ref|YP_002465121.1| - 0.067 13.3 1.4 0.12 12.5 1.4 1.4 1 0 0 1 1 1 0 DprA winged helix domain FliG_M PF14841.6 gi|219850689|ref|YP_002465121.1| - 0.081 13.2 3.5 5.8 7.2 0.1 2.6 3 0 0 3 3 3 0 FliG middle domain FeoC PF09012.10 gi|219850689|ref|YP_002465121.1| - 0.12 12.5 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator PspB PF06667.12 gi|219850689|ref|YP_002465121.1| - 1.1 9.4 4.4 11 6.1 0.1 2.5 2 0 0 2 2 2 0 Phage shock protein B Aminotran_1_2 PF00155.21 gi|219850690|ref|YP_002465122.1| - 2e-67 227.9 0.0 2.2e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219850690|ref|YP_002465122.1| - 2e-10 40.5 0.1 2.9e-10 40.0 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|219850690|ref|YP_002465122.1| - 1.3e-05 24.3 0.0 6.8e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219850690|ref|YP_002465122.1| - 0.00018 20.9 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|219850690|ref|YP_002465122.1| - 0.00044 18.9 0.0 0.00063 18.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|219850690|ref|YP_002465122.1| - 0.0012 17.6 0.0 0.002 16.9 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain E1_dh PF00676.20 gi|219850690|ref|YP_002465122.1| - 0.004 16.1 0.0 0.0064 15.5 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component N6_N4_Mtase PF01555.18 gi|219850691|ref|YP_002465123.1| - 5.3e-36 124.5 0.0 6.7e-36 124.1 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|219850691|ref|YP_002465123.1| - 5.5e-06 26.9 0.1 0.17 12.5 0.0 3.0 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219850691|ref|YP_002465123.1| - 0.00044 20.9 0.0 0.011 16.5 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219850691|ref|YP_002465123.1| - 0.0012 18.7 0.0 1 9.1 0.0 2.4 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_15 PF09445.10 gi|219850691|ref|YP_002465123.1| - 0.057 13.0 0.0 4.5 6.8 0.0 2.2 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|219850691|ref|YP_002465123.1| - 0.13 13.1 0.0 2.5 8.9 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219850692|ref|YP_002465124.1| - 2.1e-10 41.2 0.0 6.7e-10 39.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219850692|ref|YP_002465124.1| - 5.9e-08 32.7 0.0 1.1e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|219850692|ref|YP_002465124.1| - 1.2e-06 27.8 0.0 1.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|219850692|ref|YP_002465124.1| - 1.8e-06 28.5 0.0 8.9e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain GidB PF02527.15 gi|219850692|ref|YP_002465124.1| - 4.4e-06 26.1 0.0 6e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 gi|219850692|ref|YP_002465124.1| - 5.4e-06 26.3 0.0 1.1e-05 25.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219850692|ref|YP_002465124.1| - 0.00052 20.7 0.0 0.00097 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219850692|ref|YP_002465124.1| - 0.0013 18.6 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|219850692|ref|YP_002465124.1| - 0.0022 17.6 0.0 0.0032 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|219850692|ref|YP_002465124.1| - 0.0033 16.9 0.0 0.0047 16.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|219850692|ref|YP_002465124.1| - 0.0066 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|219850692|ref|YP_002465124.1| - 0.013 14.6 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase DUF2716 PF10898.8 gi|219850692|ref|YP_002465124.1| - 0.044 14.1 0.4 0.11 12.9 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2716) Cons_hypoth95 PF03602.15 gi|219850692|ref|YP_002465124.1| - 0.057 13.1 0.0 0.091 12.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 gi|219850692|ref|YP_002465124.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Spore_YtfJ PF09579.10 gi|219850693|ref|YP_002465125.1| - 1.6e-14 53.8 3.2 2.6e-14 53.1 3.2 1.4 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.8 gi|219850694|ref|YP_002465126.1| - 2.1e-06 27.7 0.3 2.1e-06 27.7 0.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2953) NRDD PF13597.6 gi|219850696|ref|YP_002465128.1| - 2.9e-127 425.8 0.0 3.7e-127 425.5 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|219850696|ref|YP_002465128.1| - 0.023 15.3 0.0 0.051 14.1 0.0 1.5 1 0 0 1 1 1 0 ATP cone domain Glutaredoxin PF00462.24 gi|219850697|ref|YP_002465129.1| - 0.0002 21.5 0.0 0.00028 21.0 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Polysacc_synt_C PF14667.6 gi|219850698|ref|YP_002465130.1| - 2.1e-18 66.8 16.2 2.1e-18 66.8 16.2 3.6 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|219850698|ref|YP_002465130.1| - 8.2e-17 61.5 18.2 8.2e-17 61.5 18.2 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|219850698|ref|YP_002465130.1| - 4.9e-13 49.0 8.4 4.9e-13 49.0 8.4 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|219850698|ref|YP_002465130.1| - 0.0013 17.4 28.3 0.011 14.3 28.3 2.1 1 1 0 1 1 1 1 Lipid II flippase MurJ DUF1282 PF06930.12 gi|219850698|ref|YP_002465130.1| - 0.0028 17.4 7.7 0.0028 17.4 7.7 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1282) LigT_PEase PF02834.16 gi|219850699|ref|YP_002465131.1| - 2.4e-23 82.1 0.1 2.3e-13 50.2 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|219850699|ref|YP_002465131.1| - 2.1e-09 37.4 0.0 2.6e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|219850699|ref|YP_002465131.1| - 0.00032 20.6 0.0 0.00052 20.0 0.0 1.4 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.11 gi|219850700|ref|YP_002465132.1| - 1.3e-43 147.8 0.0 2.4e-43 146.9 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|219850700|ref|YP_002465132.1| - 4.4e-11 42.9 0.0 8e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|219850700|ref|YP_002465132.1| - 4.5e-05 23.7 0.0 7.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain P-II PF00543.22 gi|219850701|ref|YP_002465133.1| - 6.4e-40 135.9 2.7 7.2e-40 135.7 2.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Response_reg PF00072.24 gi|219850702|ref|YP_002465134.1| - 1.5e-19 70.2 0.0 2.6e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219850702|ref|YP_002465134.1| - 2.4e-10 40.9 0.0 5.2e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|219850702|ref|YP_002465134.1| - 0.0006 19.8 0.1 0.0023 17.9 0.0 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|219850702|ref|YP_002465134.1| - 0.017 14.9 0.5 0.037 13.7 0.5 1.7 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|219850702|ref|YP_002465134.1| - 0.025 14.5 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|219850702|ref|YP_002465134.1| - 0.1 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EamA PF00892.20 gi|219850703|ref|YP_002465135.1| - 8.2e-24 84.3 34.9 6.1e-16 58.8 11.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family Multi_Drug_Res PF00893.19 gi|219850703|ref|YP_002465135.1| - 0.00065 20.3 18.3 0.053 14.2 4.0 3.7 2 2 1 3 3 3 2 Small Multidrug Resistance protein ATP1G1_PLM_MAT8 PF02038.16 gi|219850703|ref|YP_002465135.1| - 0.48 9.9 0.0 0.48 9.9 0.0 3.0 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family Methyltransf_31 PF13847.6 gi|219850704|ref|YP_002465136.1| - 2e-18 66.6 0.0 2.6e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219850704|ref|YP_002465136.1| - 8.6e-17 61.2 0.0 1.1e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|219850704|ref|YP_002465136.1| - 1.4e-14 54.5 0.1 2e-14 54.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219850704|ref|YP_002465136.1| - 4.5e-14 52.9 0.1 6.3e-14 52.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219850704|ref|YP_002465136.1| - 3.4e-10 40.5 0.0 4.9e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219850704|ref|YP_002465136.1| - 1.8e-06 27.9 0.0 3e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219850704|ref|YP_002465136.1| - 3.5e-05 23.7 0.0 4.9e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.15 gi|219850704|ref|YP_002465136.1| - 0.00013 21.4 0.0 0.00016 21.1 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_4 PF02390.17 gi|219850704|ref|YP_002465136.1| - 0.00033 20.2 0.0 0.00057 19.4 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_9 PF08003.11 gi|219850704|ref|YP_002465136.1| - 0.00094 18.2 0.0 0.0012 17.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|219850704|ref|YP_002465136.1| - 0.0013 18.2 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.18 gi|219850704|ref|YP_002465136.1| - 0.0042 16.4 0.4 0.006 15.9 0.1 1.4 2 0 0 2 2 2 1 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|219850704|ref|YP_002465136.1| - 0.0061 16.5 0.0 0.0093 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|219850704|ref|YP_002465136.1| - 0.012 16.6 0.0 0.019 16.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|219850704|ref|YP_002465136.1| - 0.013 15.1 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|219850704|ref|YP_002465136.1| - 0.014 15.4 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain US22 PF02393.16 gi|219850704|ref|YP_002465136.1| - 0.024 14.9 0.1 0.052 13.8 0.0 1.5 2 0 0 2 2 2 0 US22 like CMAS PF02353.20 gi|219850704|ref|YP_002465136.1| - 0.039 13.3 0.0 0.043 13.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase SMC_N PF02463.19 gi|219850705|ref|YP_002465137.1| - 1.5e-15 57.3 0.0 4.6e-15 55.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219850705|ref|YP_002465137.1| - 7.2e-15 56.0 10.2 7.2e-15 56.0 10.2 4.3 1 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|219850705|ref|YP_002465137.1| - 8.3e-08 32.3 5.0 0.00026 20.8 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|219850705|ref|YP_002465137.1| - 2.2e-06 27.7 0.6 0.0041 17.0 0.1 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|219850705|ref|YP_002465137.1| - 2.4e-05 24.0 0.0 6.2e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|219850705|ref|YP_002465137.1| - 0.0019 18.7 5.4 4.6 7.8 4.3 4.2 2 1 0 2 2 2 2 ABC transporter Collagen_mid PF15984.5 gi|219850705|ref|YP_002465137.1| - 0.11 12.3 0.6 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial collagen, middle region Rad50_zn_hook PF04423.14 gi|219850705|ref|YP_002465137.1| - 0.72 9.7 0.0 0.72 9.7 0.0 2.9 4 0 0 4 4 4 0 Rad50 zinc hook motif Metallophos PF00149.28 gi|219850706|ref|YP_002465138.1| - 7.5e-12 46.2 0.0 1e-11 45.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF4875 PF16175.5 gi|219850706|ref|YP_002465138.1| - 0.062 13.4 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4875) Tautomerase PF01361.21 gi|219850707|ref|YP_002465139.1| - 2.4e-11 43.4 0.1 2.8e-11 43.2 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|219850707|ref|YP_002465139.1| - 4.2e-07 30.0 0.1 4.7e-07 29.8 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme CHMI PF02962.15 gi|219850707|ref|YP_002465139.1| - 0.018 15.4 0.1 0.024 15.0 0.1 1.3 1 1 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase DUF503 PF04456.12 gi|219850707|ref|YP_002465139.1| - 0.019 14.8 0.0 0.031 14.1 0.0 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF503) DUF2590 PF10761.9 gi|219850707|ref|YP_002465139.1| - 0.038 14.1 0.1 0.045 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2590) MarR PF01047.22 gi|219850707|ref|YP_002465139.1| - 0.043 13.7 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF21 PF01595.20 gi|219850708|ref|YP_002465140.1| - 2e-50 170.9 4.2 2.7e-50 170.5 4.2 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|219850708|ref|YP_002465140.1| - 5.4e-24 84.0 0.2 1.7e-22 79.2 0.1 2.6 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|219850708|ref|YP_002465140.1| - 9.2e-11 42.0 0.3 6.1e-05 23.4 0.0 2.7 2 0 0 2 2 2 2 CBS domain RNase_HII PF01351.18 gi|219850709|ref|YP_002465141.1| - 1.8e-29 103.0 0.0 2.7e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease HII tRNA_anti-codon PF01336.25 gi|219850711|ref|YP_002465143.1| - 7.3e-09 35.5 0.1 0.0014 18.5 0.0 2.8 3 0 0 3 3 3 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|219850711|ref|YP_002465143.1| - 0.033 13.9 0.0 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 Replication factor-A C terminal domain DUF1858 PF08984.11 gi|219850712|ref|YP_002465144.1| - 2.6e-19 69.1 0.0 2.9e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) HTH_28 PF13518.6 gi|219850712|ref|YP_002465144.1| - 0.15 12.2 0.1 2.5 8.3 0.1 2.5 2 1 1 3 3 3 0 Helix-turn-helix domain zf-like PF04071.12 gi|219850713|ref|YP_002465145.1| - 1.1e-29 102.2 8.3 1.6e-29 101.6 8.3 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain NRDD PF13597.6 gi|219850714|ref|YP_002465146.1| - 1.5e-14 53.7 2.1 1.5e-14 53.7 2.1 2.2 1 1 1 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|219850714|ref|YP_002465146.1| - 0.00045 20.2 12.1 0.042 13.9 2.8 2.6 2 1 0 2 2 2 2 Double zinc ribbon TerY_C PF15616.6 gi|219850714|ref|YP_002465146.1| - 0.0086 16.2 9.0 0.015 15.4 9.0 1.5 1 1 0 1 1 1 1 TerY-C metal binding domain zinc_ribbon_15 PF17032.5 gi|219850714|ref|YP_002465146.1| - 0.015 16.0 10.8 1.3 9.8 1.9 3.1 3 0 0 3 3 3 0 zinc-ribbon family DUF1610 PF07754.11 gi|219850714|ref|YP_002465146.1| - 0.028 14.4 11.9 0.087 12.8 1.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.10 gi|219850714|ref|YP_002465146.1| - 0.04 13.6 2.4 0.04 13.6 2.4 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain PolC_DP2 PF03833.13 gi|219850714|ref|YP_002465146.1| - 0.12 10.2 4.0 0.13 10.1 4.0 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.6 gi|219850714|ref|YP_002465146.1| - 0.14 11.9 17.7 0.8 9.5 0.5 4.0 3 1 1 4 4 4 0 zinc-ribbon domain RecR PF02132.15 gi|219850714|ref|YP_002465146.1| - 0.16 11.6 10.2 0.32 10.6 2.2 3.4 3 1 0 3 3 3 0 RecR protein NOB1_Zn_bind PF08772.11 gi|219850714|ref|YP_002465146.1| - 0.52 10.5 9.2 2.8 8.2 0.5 3.2 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|219850714|ref|YP_002465146.1| - 1 8.8 17.2 6.6 6.3 3.6 3.7 2 2 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|219850714|ref|YP_002465146.1| - 1.8 8.6 13.8 0.9 9.6 2.4 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|219850714|ref|YP_002465146.1| - 2.5 8.3 22.2 1.8e+04 -8.8 22.2 3.9 1 1 0 1 1 0 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|219850714|ref|YP_002465146.1| - 2.8 8.1 15.0 3.6 7.7 0.6 3.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain FYVE PF01363.21 gi|219850714|ref|YP_002465146.1| - 2.8 8.1 16.2 2.3 8.4 7.7 2.6 1 1 1 2 2 1 0 FYVE zinc finger zf-C4_Topoisom PF01396.19 gi|219850714|ref|YP_002465146.1| - 4.1 7.3 11.2 7.6 6.4 0.1 3.5 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_2 PF14445.6 gi|219850714|ref|YP_002465146.1| - 8.6 6.6 12.9 0.74 10.0 5.4 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 OMPdecase PF00215.24 gi|219850715|ref|YP_002465147.1| - 3.1e-31 108.7 0.0 4.2e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DS PF01916.17 gi|219850716|ref|YP_002465148.1| - 3.2e-98 328.5 0.0 3.6e-98 328.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1743 PF08489.11 gi|219850717|ref|YP_002465149.1| - 6.1e-37 126.2 0.0 9.9e-37 125.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|219850717|ref|YP_002465149.1| - 0.026 14.4 0.5 0.051 13.5 0.5 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_3 PF01381.22 gi|219850718|ref|YP_002465150.1| - 7.1e-12 45.2 0.1 1.6e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|219850718|ref|YP_002465150.1| - 2.2e-07 31.1 1.3 2.5e-06 27.7 0.2 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|219850718|ref|YP_002465150.1| - 1.4e-05 25.0 0.8 5.3e-05 23.1 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|219850718|ref|YP_002465150.1| - 0.0055 16.6 0.0 0.017 15.1 0.0 1.8 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|219850718|ref|YP_002465150.1| - 0.019 14.5 0.2 0.12 12.0 0.1 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 MarR PF01047.22 gi|219850718|ref|YP_002465150.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 MarR family PDDEXK_5 PF11645.8 gi|219850718|ref|YP_002465150.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease Cpn60_TCP1 PF00118.24 gi|219850719|ref|YP_002465151.1| - 4.5e-184 612.7 23.6 5.1e-184 612.5 23.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TrwC PF08751.11 gi|219850719|ref|YP_002465151.1| - 0.15 11.5 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 TrwC relaxase SSXT PF05030.12 gi|219850719|ref|YP_002465151.1| - 0.17 11.6 0.3 0.43 10.2 0.3 1.7 1 0 0 1 1 1 0 SSXT protein (N-terminal region) DUF1894 PF08979.11 gi|219850720|ref|YP_002465152.1| - 4.2e-36 123.2 0.0 4.6e-36 123.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.11 gi|219850721|ref|YP_002465153.1| - 1.6e-56 190.5 0.1 1.8e-56 190.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) PEGA PF08308.11 gi|219850722|ref|YP_002465154.1| - 1.7e-12 47.0 33.4 0.0055 16.6 1.6 6.3 5 1 0 5 5 5 5 PEGA domain DUF3294 PF07957.11 gi|219850722|ref|YP_002465154.1| - 0.012 15.3 0.0 1.1 8.9 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3294) PEP-CTERM PF07589.11 gi|219850722|ref|YP_002465154.1| - 0.31 11.2 3.2 0.72 10.0 3.2 1.6 1 0 0 1 1 1 0 PEP-CTERM motif Peptidase_M9 PF01752.17 gi|219850722|ref|YP_002465154.1| - 0.71 9.1 8.4 3.5 6.8 0.2 3.1 3 0 0 3 3 3 0 Collagenase DUF1372 PF07116.11 gi|219850722|ref|YP_002465154.1| - 7.3 6.8 8.2 8.8 6.6 0.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1372) CutA1 PF03091.15 gi|219850723|ref|YP_002465155.1| - 2.7e-32 110.5 0.1 3e-32 110.4 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Aminotran_1_2 PF00155.21 gi|219850724|ref|YP_002465156.1| - 5.1e-61 206.8 0.0 5.8e-61 206.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|219850724|ref|YP_002465156.1| - 0.00086 17.9 0.0 0.0012 17.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Orn_Arg_deC_N PF02784.16 gi|219850725|ref|YP_002465157.1| - 4.8e-55 186.6 0.0 6.2e-55 186.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|219850725|ref|YP_002465157.1| - 2e-23 82.4 0.0 2.3e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|219850725|ref|YP_002465157.1| - 4.6e-09 36.2 0.1 9.7e-09 35.2 0.1 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain tRNA_anti-codon PF01336.25 gi|219850726|ref|YP_002465158.1| - 1.6e-12 47.3 0.2 7.8e-07 29.0 0.0 3.8 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|219850726|ref|YP_002465158.1| - 6.3e-08 32.5 0.0 0.0052 16.7 0.0 2.5 2 0 0 2 2 2 2 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|219850726|ref|YP_002465158.1| - 0.00084 19.1 0.0 0.031 14.0 0.0 2.2 2 0 0 2 2 2 1 Cell division control protein 24, OB domain 3 POT1PC PF16686.5 gi|219850726|ref|YP_002465158.1| - 0.2 11.6 0.0 21 4.9 0.0 2.3 2 0 0 2 2 2 0 ssDNA-binding domain of telomere protection protein Rad51 PF08423.11 gi|219850727|ref|YP_002465159.1| - 1.3e-79 267.1 0.0 1.7e-79 266.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|219850727|ref|YP_002465159.1| - 1.4e-13 51.2 1.1 3.3e-13 50.0 1.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|219850727|ref|YP_002465159.1| - 1.6e-09 37.5 0.0 2.6e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|219850727|ref|YP_002465159.1| - 3.1e-08 33.4 0.0 1.9e-06 27.5 0.0 2.2 1 1 0 1 1 1 1 recA bacterial DNA recombination protein HHH PF00633.23 gi|219850727|ref|YP_002465159.1| - 5.1e-07 29.2 2.9 0.0042 16.9 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|219850727|ref|YP_002465159.1| - 5.4e-06 26.1 0.0 1.1e-05 25.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain HHH_2 PF12826.7 gi|219850727|ref|YP_002465159.1| - 1e-05 25.5 0.8 2.5e-05 24.3 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_24 PF13479.6 gi|219850727|ref|YP_002465159.1| - 5.5e-05 23.0 0.0 0.00019 21.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|219850727|ref|YP_002465159.1| - 9e-05 22.6 0.0 0.00018 21.7 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|219850727|ref|YP_002465159.1| - 0.00037 20.3 0.0 0.0018 18.1 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|219850727|ref|YP_002465159.1| - 0.00047 20.3 0.0 0.0017 18.6 0.0 2.0 1 0 0 1 1 1 1 IMS family HHH motif HhH-GPD PF00730.25 gi|219850727|ref|YP_002465159.1| - 0.0013 19.2 0.0 0.0025 18.2 0.0 1.5 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_3 PF12836.7 gi|219850727|ref|YP_002465159.1| - 0.0017 18.6 0.1 0.18 12.1 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif CobU PF02283.16 gi|219850727|ref|YP_002465159.1| - 0.036 13.6 0.1 0.58 9.7 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF4332 PF14229.6 gi|219850727|ref|YP_002465159.1| - 0.064 13.5 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) AAA_22 PF13401.6 gi|219850727|ref|YP_002465159.1| - 0.074 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|219850727|ref|YP_002465159.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|219850727|ref|YP_002465159.1| - 0.13 12.7 0.1 0.47 10.9 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Hydrolase_3 PF08282.12 gi|219850728|ref|YP_002465160.1| - 7.1e-33 114.4 0.0 1.4e-19 70.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|219850728|ref|YP_002465160.1| - 4.6e-10 40.1 0.3 0.0015 18.8 0.0 3.3 1 1 2 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|219850728|ref|YP_002465160.1| - 1.6e-08 34.4 0.1 7.8e-08 32.2 0.0 1.9 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|219850728|ref|YP_002465160.1| - 4.7e-07 30.4 1.0 0.03 14.7 0.0 3.4 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|219850728|ref|YP_002465160.1| - 0.03 14.4 0.0 0.079 13.1 0.0 1.7 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|219850728|ref|YP_002465160.1| - 0.17 12.0 0.0 5.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PRC PF05239.16 gi|219850729|ref|YP_002465161.1| - 6.3e-13 48.6 0.6 7.3e-13 48.4 0.6 1.0 1 0 0 1 1 1 1 PRC-barrel domain Ion_trans PF00520.31 gi|219850731|ref|YP_002465163.1| - 6.4e-20 71.4 16.1 8.2e-20 71.1 16.1 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|219850731|ref|YP_002465163.1| - 7.1e-14 51.5 5.4 7.1e-14 51.5 5.4 2.4 2 1 0 2 2 2 1 Ion channel SHOCT PF09851.9 gi|219850731|ref|YP_002465163.1| - 0.00074 19.2 0.9 0.002 17.8 0.9 1.8 1 0 0 1 1 1 1 Short C-terminal domain HATPase_c PF02518.26 gi|219850732|ref|YP_002465164.1| - 4.2e-11 43.4 0.1 5.6e-11 42.9 0.1 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219850733|ref|YP_002465165.1| - 3.7e-40 136.5 3.0 5.2e-11 42.6 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.12 gi|219850733|ref|YP_002465165.1| - 1e-36 125.1 0.0 5.7e-12 45.8 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|219850733|ref|YP_002465165.1| - 1.1e-34 118.8 4.3 4e-11 43.1 0.0 5.3 5 1 0 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|219850733|ref|YP_002465165.1| - 2.1e-25 89.1 0.1 2.4e-06 27.8 0.0 6.0 5 1 0 5 5 5 5 PAS fold HisKA_2 PF07568.12 gi|219850733|ref|YP_002465165.1| - 8.6e-25 86.6 1.9 5.5e-24 84.0 1.9 2.6 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.24 gi|219850733|ref|YP_002465165.1| - 2.4e-23 82.4 0.1 1.8e-22 79.6 0.0 2.6 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|219850733|ref|YP_002465165.1| - 2.2e-18 65.8 0.2 5.9e-05 23.0 0.0 4.9 4 0 0 4 4 4 4 PAS domain PAS_7 PF12860.7 gi|219850733|ref|YP_002465165.1| - 7.4e-13 48.7 0.2 1.1e-08 35.3 0.0 5.1 5 0 0 5 5 5 1 PAS fold HATPase_c PF02518.26 gi|219850733|ref|YP_002465165.1| - 4.1e-11 43.4 0.0 2.7e-10 40.7 0.0 2.5 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|219850733|ref|YP_002465165.1| - 0.00015 21.8 0.0 0.00045 20.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|219850733|ref|YP_002465165.1| - 0.0048 17.6 0.9 0.011 16.5 0.1 2.0 2 0 0 2 2 2 1 HWE histidine kinase Response_reg PF00072.24 gi|219850734|ref|YP_002465166.1| - 4e-21 75.3 0.1 8e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219850734|ref|YP_002465166.1| - 2.8e-10 40.4 0.0 5.2e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|219850734|ref|YP_002465166.1| - 1.9e-07 31.0 0.0 3.7e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219850734|ref|YP_002465166.1| - 3.3e-05 23.8 0.0 8e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|219850734|ref|YP_002465166.1| - 7.7e-05 22.9 0.0 0.00015 22.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_12 PF18095.1 gi|219850734|ref|YP_002465166.1| - 0.032 13.9 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain HEAT_2 PF13646.6 gi|219850735|ref|YP_002465167.1| - 2.6e-120 393.1 35.4 1e-17 64.3 0.0 11.7 7 4 5 12 12 12 12 HEAT repeats HEAT PF02985.22 gi|219850735|ref|YP_002465167.1| - 6e-57 184.7 21.7 0.024 14.8 0.0 23.0 24 0 0 24 24 24 11 HEAT repeat HEAT_PBS PF03130.16 gi|219850735|ref|YP_002465167.1| - 4.9e-53 172.4 44.8 0.00027 21.3 0.0 20.1 22 1 0 22 22 19 13 PBS lyase HEAT-like repeat Arm PF00514.23 gi|219850735|ref|YP_002465167.1| - 3.9e-22 77.5 6.6 0.2 11.7 0.0 14.5 13 2 3 16 16 15 4 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|219850735|ref|YP_002465167.1| - 5.4e-22 77.9 40.1 0.053 14.1 0.2 17.6 18 2 3 21 21 20 5 HEAT-like repeat Cnd1 PF12717.7 gi|219850735|ref|YP_002465167.1| - 9.8e-17 61.5 1.8 0.72 9.9 0.0 11.5 8 5 5 13 13 13 4 non-SMC mitotic condensation complex subunit 1 Vitellogenin_N PF01347.22 gi|219850735|ref|YP_002465167.1| - 1.7e-09 36.6 0.0 4.8e-07 28.6 0.0 3.3 3 0 0 3 3 3 1 Lipoprotein amino terminal region Adaptin_N PF01602.20 gi|219850735|ref|YP_002465167.1| - 3e-06 26.1 1.4 0.15 10.5 0.1 5.7 7 0 0 7 7 7 1 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|219850735|ref|YP_002465167.1| - 5.8e-06 26.7 0.2 1.3 9.5 0.1 7.4 5 3 3 8 8 8 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain ERAP1_C PF11838.8 gi|219850735|ref|YP_002465167.1| - 1.2e-05 25.0 0.1 0.7 9.4 0.0 5.0 2 2 2 5 5 5 1 ERAP1-like C-terminal domain RTP1_C1 PF10363.9 gi|219850735|ref|YP_002465167.1| - 0.00037 20.6 0.1 12 6.2 0.0 5.9 6 2 1 7 7 7 0 Required for nuclear transport of RNA pol II C-terminus 1 CLASP_N PF12348.8 gi|219850735|ref|YP_002465167.1| - 0.00077 19.1 2.5 6.8 6.2 0.0 6.1 6 2 0 6 6 6 1 CLASP N terminal Aconitase_B_N PF11791.8 gi|219850735|ref|YP_002465167.1| - 0.018 15.1 0.1 22 5.1 0.0 5.0 7 1 0 7 7 7 0 Aconitate B N-terminal domain Cohesin_HEAT PF12765.7 gi|219850735|ref|YP_002465167.1| - 0.073 13.4 18.8 3.5 8.0 0.2 6.8 6 1 1 7 7 6 0 HEAT repeat associated with sister chromatid cohesion API5 PF05918.11 gi|219850735|ref|YP_002465167.1| - 0.077 11.8 0.0 11 4.7 0.0 2.7 3 0 0 3 3 3 0 Apoptosis inhibitory protein 5 (API5) NopRA1 PF16201.5 gi|219850735|ref|YP_002465167.1| - 0.2 11.2 0.0 12 5.5 0.0 3.9 6 0 0 6 6 6 0 Nucleolar pre-ribosomal-associated protein 1 Cnd3 PF12719.7 gi|219850735|ref|YP_002465167.1| - 0.26 10.5 0.0 2.5e+02 0.6 0.0 4.8 6 1 1 7 7 7 0 Nuclear condensing complex subunits, C-term domain Radical_SAM PF04055.21 gi|219850736|ref|YP_002465168.1| - 4.6e-12 46.6 0.1 6.7e-12 46.1 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|219850737|ref|YP_002465169.1| - 4.5e-18 65.6 0.0 5.2e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|219850737|ref|YP_002465169.1| - 3.2e-12 46.7 0.2 6.1e-12 45.8 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|219850737|ref|YP_002465169.1| - 9.7e-12 45.1 0.0 1.2e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|219850737|ref|YP_002465169.1| - 1.9e-09 37.5 0.0 2.7e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|219850737|ref|YP_002465169.1| - 0.0001 22.2 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|219850737|ref|YP_002465169.1| - 0.0089 16.2 0.2 0.024 14.8 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|219850737|ref|YP_002465169.1| - 0.035 14.2 0.0 0.059 13.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PAS_9 PF13426.7 gi|219850738|ref|YP_002465170.1| - 2.8e-51 172.1 0.5 2.2e-10 40.7 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS PF00989.25 gi|219850738|ref|YP_002465170.1| - 1.2e-49 167.0 0.3 8.2e-11 41.9 0.0 6.5 5 2 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|219850738|ref|YP_002465170.1| - 1.2e-45 154.3 0.1 8.2e-12 45.4 0.0 5.8 5 1 0 5 5 5 5 PAS fold PAS_3 PF08447.12 gi|219850738|ref|YP_002465170.1| - 2.8e-36 123.6 0.0 1.3e-14 54.3 0.0 6.0 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|219850738|ref|YP_002465170.1| - 1.1e-23 82.7 0.1 8e-05 22.6 0.0 5.6 6 0 0 6 6 6 4 PAS domain HATPase_c PF02518.26 gi|219850738|ref|YP_002465170.1| - 5.7e-11 42.9 0.1 1.2e-10 41.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|219850738|ref|YP_002465170.1| - 0.0043 17.2 0.0 1.1 9.5 0.0 3.3 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|219850738|ref|YP_002465170.1| - 0.0094 15.9 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 gi|219850738|ref|YP_002465170.1| - 0.023 14.8 0.0 0.2 11.8 0.0 2.2 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain DUF4118 PF13493.6 gi|219850738|ref|YP_002465170.1| - 0.062 13.1 8.9 1.1 9.1 8.9 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) zf-C2H2_10 PF16588.5 gi|219850738|ref|YP_002465170.1| - 0.15 11.8 0.1 0.28 10.9 0.1 1.4 1 0 0 1 1 1 0 C2H2 zinc-finger HrcA_DNA-bdg PF03444.15 gi|219850739|ref|YP_002465171.1| - 3.5e-36 122.7 0.1 7.8e-36 121.6 0.1 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|219850739|ref|YP_002465171.1| - 2.5e-23 82.3 3.1 1.5e-11 44.6 0.1 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|219850739|ref|YP_002465171.1| - 2.5e-06 27.7 0.5 5.5e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|219850739|ref|YP_002465171.1| - 2.6e-06 27.3 0.0 5.3e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain Phage_rep_org_N PF09681.10 gi|219850739|ref|YP_002465171.1| - 0.18 11.7 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) SPP PF06550.11 gi|219850740|ref|YP_002465172.1| - 1.7e-80 270.5 20.9 2.1e-80 270.2 20.9 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|219850740|ref|YP_002465172.1| - 8.6e-05 22.2 13.1 0.0023 17.5 13.1 2.4 1 1 0 1 1 1 1 Signal peptide peptidase DUF543 PF04418.12 gi|219850740|ref|YP_002465172.1| - 0.86 9.6 5.9 0.098 12.7 1.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF543) XPG_I PF00867.18 gi|219850742|ref|YP_002465174.1| - 9.4e-26 90.0 0.0 1.5e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|219850742|ref|YP_002465174.1| - 3.9e-18 65.8 0.0 5.9e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|219850742|ref|YP_002465174.1| - 0.0032 18.0 0.0 0.0073 16.9 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|219850742|ref|YP_002465174.1| - 0.0045 17.6 0.0 0.06 14.0 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain PAS_9 PF13426.7 gi|219850743|ref|YP_002465175.1| - 2.6e-18 66.2 0.1 6.8e-18 64.8 0.1 1.8 1 0 0 1 1 1 1 PAS domain HisKA_7TM PF16927.5 gi|219850743|ref|YP_002465175.1| - 7.5e-15 55.6 36.2 1.2e-14 54.9 36.2 1.3 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS PF00989.25 gi|219850743|ref|YP_002465175.1| - 5e-14 52.3 0.0 9.4e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|219850743|ref|YP_002465175.1| - 2.7e-11 44.0 0.1 5.2e-11 43.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219850743|ref|YP_002465175.1| - 4.5e-07 30.1 0.0 1e-06 28.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|219850743|ref|YP_002465175.1| - 8.2e-06 26.0 0.1 3e-05 24.1 0.1 2.0 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219850743|ref|YP_002465175.1| - 8.3e-06 25.7 0.1 2.5e-05 24.2 0.1 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|219850743|ref|YP_002465175.1| - 1.1e-05 25.7 0.0 3.4e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|219850743|ref|YP_002465175.1| - 2.4e-05 24.0 2.4 4.3e-05 23.1 1.9 1.6 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|219850743|ref|YP_002465175.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7TMR-DISM_7TM PF07695.11 gi|219850743|ref|YP_002465175.1| - 6.6 6.6 43.2 14 5.5 43.2 1.6 1 1 0 1 1 1 0 7TM diverse intracellular signalling MFS_1 PF07690.16 gi|219850744|ref|YP_002465176.1| - 6.5e-53 179.9 46.2 6.5e-53 179.9 46.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219850744|ref|YP_002465176.1| - 5.8e-09 35.3 36.3 2e-06 27.0 15.1 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|219850744|ref|YP_002465176.1| - 0.011 14.1 8.9 0.019 13.4 4.8 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector NosD PF05048.13 gi|219850745|ref|YP_002465177.1| - 1.4e-32 112.9 20.4 1.4e-32 112.9 20.4 1.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219850745|ref|YP_002465177.1| - 2.6e-09 37.1 10.8 2.6e-09 37.1 10.8 2.3 1 1 1 2 2 2 2 Right handed beta helix region EF-hand_6 PF13405.6 gi|219850745|ref|YP_002465177.1| - 0.33 11.0 1.5 18 5.6 0.0 2.7 2 0 0 2 2 2 0 EF-hand domain DUF4436 PF14494.6 gi|219850747|ref|YP_002465179.1| - 4.3 6.5 7.3 0.18 11.1 1.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4436) DUF202 PF02656.15 gi|219850747|ref|YP_002465179.1| - 5 7.7 13.8 7.2 7.1 0.2 3.7 1 1 1 2 2 2 0 Domain of unknown function (DUF202) PrsW-protease PF13367.6 gi|219850748|ref|YP_002465180.1| - 2.5e-18 66.2 9.0 3.1e-18 65.9 9.0 1.1 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease HTH_20 PF12840.7 gi|219850749|ref|YP_002465181.1| - 1.5e-08 34.6 0.0 2.6e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|219850749|ref|YP_002465181.1| - 2.7e-05 23.6 0.1 5.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|219850749|ref|YP_002465181.1| - 0.0096 15.5 0.1 0.022 14.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.10 gi|219850749|ref|YP_002465181.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|219850749|ref|YP_002465181.1| - 0.018 14.9 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|219850749|ref|YP_002465181.1| - 0.021 14.7 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|219850749|ref|YP_002465181.1| - 0.045 13.7 0.1 0.083 12.9 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 gi|219850749|ref|YP_002465181.1| - 0.076 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Calici_MSP PF05752.11 gi|219850749|ref|YP_002465181.1| - 0.085 12.7 0.0 0.099 12.5 0.0 1.2 1 0 0 1 1 1 0 Calicivirus minor structural protein CDP-OH_P_transf PF01066.21 gi|219850750|ref|YP_002465182.1| - 3.9e-10 40.3 0.8 3.9e-10 40.3 0.8 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.6 gi|219850751|ref|YP_002465183.1| - 2.8e-15 57.0 0.0 5.5e-15 56.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|219850751|ref|YP_002465183.1| - 0.00084 19.6 0.9 0.0047 17.2 0.3 2.0 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|219850751|ref|YP_002465183.1| - 0.0036 17.5 0.3 0.051 13.7 0.0 2.1 1 1 0 2 2 2 1 AAA domain CoaE PF01121.20 gi|219850751|ref|YP_002465183.1| - 0.023 14.3 1.6 0.045 13.4 0.4 2.0 1 1 2 3 3 3 0 Dephospho-CoA kinase UPF0180 PF03698.13 gi|219850751|ref|YP_002465183.1| - 0.048 13.8 0.0 13 6.0 0.0 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) ATP_bind_2 PF03668.15 gi|219850751|ref|YP_002465183.1| - 0.072 12.4 0.4 1.9 7.7 0.4 2.1 1 1 0 1 1 1 0 P-loop ATPase protein family DUF2075 PF09848.9 gi|219850751|ref|YP_002465183.1| - 0.26 10.5 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Aminotran_1_2 PF00155.21 gi|219850752|ref|YP_002465184.1| - 8.1e-48 163.4 0.0 9.4e-48 163.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|219850752|ref|YP_002465184.1| - 0.00057 18.9 0.0 0.0022 16.9 0.0 1.8 2 0 0 2 2 2 1 Allinase Aminotran_3 PF00202.21 gi|219850753|ref|YP_002465185.1| - 4.9e-101 338.3 0.0 6.3e-101 338.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|219850753|ref|YP_002465185.1| - 0.2 10.5 0.0 0.35 9.8 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V GMP_synt_C PF00958.22 gi|219850754|ref|YP_002465186.1| - 1.6e-27 95.4 0.0 3.6e-27 94.3 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|219850754|ref|YP_002465186.1| - 4.8e-10 39.0 0.0 1.3e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.21 gi|219850754|ref|YP_002465186.1| - 2.8e-06 27.3 0.1 4.5e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|219850754|ref|YP_002465186.1| - 4.8e-05 22.3 0.1 0.0016 17.3 0.1 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|219850754|ref|YP_002465186.1| - 0.00019 21.0 0.0 0.002 17.6 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|219850754|ref|YP_002465186.1| - 0.0074 16.3 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|219850754|ref|YP_002465186.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 Arginosuccinate synthase ThiI PF02568.14 gi|219850754|ref|YP_002465186.1| - 0.052 13.1 0.0 0.24 11.0 0.0 2.1 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CTP_synth_N PF06418.14 gi|219850755|ref|YP_002465187.1| - 4.7e-120 399.8 0.3 6.1e-120 399.5 0.3 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|219850755|ref|YP_002465187.1| - 1.7e-54 184.5 0.0 2.8e-54 183.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.23 gi|219850755|ref|YP_002465187.1| - 7.6e-06 26.0 0.0 1.3e-05 25.2 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.13 gi|219850755|ref|YP_002465187.1| - 9.9e-06 25.5 0.0 0.00073 19.3 0.0 2.8 2 1 0 2 2 2 1 Peptidase C26 4HBT PF03061.22 gi|219850756|ref|YP_002465188.1| - 1.5e-07 31.6 0.1 2.5e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|219850756|ref|YP_002465188.1| - 0.014 15.7 0.1 0.015 15.6 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Glycos_transf_2 PF00535.26 gi|219850758|ref|YP_002465190.1| - 3.2e-21 75.9 0.0 3.9e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219850758|ref|YP_002465190.1| - 7.6e-12 45.6 0.1 3.1e-11 43.6 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219850758|ref|YP_002465190.1| - 0.0013 18.3 0.0 0.0024 17.4 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Osmo_MPGsynth PF09488.10 gi|219850758|ref|YP_002465190.1| - 0.16 10.7 0.2 0.28 9.8 0.2 1.5 1 1 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) TPR_11 PF13414.6 gi|219850759|ref|YP_002465191.1| - 1.1e-05 25.0 1.6 0.23 11.1 0.7 3.6 3 0 0 3 3 3 2 TPR repeat TPR_19 PF14559.6 gi|219850759|ref|YP_002465191.1| - 2.3e-05 24.8 27.3 0.00066 20.1 0.4 6.3 3 1 4 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219850759|ref|YP_002465191.1| - 7.2e-05 23.3 33.6 0.72 10.8 1.5 8.9 6 2 4 10 10 8 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219850759|ref|YP_002465191.1| - 7.9e-05 22.5 18.3 4.2 7.7 0.1 8.5 10 1 0 10 10 9 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219850759|ref|YP_002465191.1| - 9.7e-05 22.5 1.7 1.9 9.0 0.0 5.3 3 1 1 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219850759|ref|YP_002465191.1| - 0.0019 18.4 5.4 7.5 6.9 0.0 4.6 3 1 0 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 gi|219850759|ref|YP_002465191.1| - 0.0049 17.4 22.4 0.14 12.8 0.4 8.0 9 0 0 9 9 7 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219850759|ref|YP_002465191.1| - 0.029 14.2 5.6 44 4.1 0.0 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219850759|ref|YP_002465191.1| - 0.14 12.4 4.7 62 4.2 0.1 5.2 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219850759|ref|YP_002465191.1| - 0.31 11.4 0.1 0.31 11.4 0.1 6.5 5 1 1 7 7 7 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219850759|ref|YP_002465191.1| - 0.99 9.6 13.5 1.7 8.9 0.1 5.1 4 2 1 5 5 5 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219850759|ref|YP_002465191.1| - 1.1 10.0 43.8 0.28 11.9 4.0 7.1 6 1 2 8 8 8 0 Tetratricopeptide repeat DUF2791 PF10923.8 gi|219850760|ref|YP_002465192.1| - 1.7e-120 402.6 0.0 2.1e-120 402.4 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.6 gi|219850760|ref|YP_002465192.1| - 0.0021 18.5 0.3 0.0044 17.4 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|219850760|ref|YP_002465192.1| - 0.0023 18.2 0.0 0.0099 16.2 0.0 2.0 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|219850760|ref|YP_002465192.1| - 0.014 15.1 0.1 0.028 14.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|219850760|ref|YP_002465192.1| - 0.14 11.6 0.0 1 8.9 0.0 2.1 2 1 1 3 3 3 0 P-loop containing dynein motor region DAP3 PF10236.9 gi|219850760|ref|YP_002465192.1| - 0.16 11.1 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DUF4129 PF13559.6 gi|219850760|ref|YP_002465192.1| - 0.57 10.5 4.5 0.55 10.5 1.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) Thymidylat_synt PF00303.19 gi|219850761|ref|YP_002465193.1| - 1.7e-17 63.4 0.1 3.4e-17 62.5 0.1 1.3 1 1 0 1 1 1 1 Thymidylate synthase CBM_6 PF03422.15 gi|219850763|ref|YP_002465195.1| - 1.6e-96 319.2 54.5 1.8e-21 76.8 1.7 7.0 6 3 0 6 6 6 5 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219850763|ref|YP_002465195.1| - 9.9e-52 173.8 28.3 2.6e-13 50.1 0.0 5.8 6 0 0 6 6 6 5 DUF5010 C-terminal domain Lipase_GDSL_2 PF13472.6 gi|219850763|ref|YP_002465195.1| - 9e-18 65.3 0.4 2.4e-17 63.9 0.4 1.8 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family CBM_35 PF16990.5 gi|219850763|ref|YP_002465195.1| - 4.8e-16 59.1 35.4 1e-05 25.8 0.4 6.3 6 0 0 6 6 6 5 Carbohydrate binding module (family 35) Lipase_GDSL PF00657.22 gi|219850763|ref|YP_002465195.1| - 3.3e-12 46.8 0.2 5.7e-12 46.0 0.2 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.6 gi|219850763|ref|YP_002465195.1| - 0.0016 18.6 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family YfhO PF09586.10 gi|219850763|ref|YP_002465195.1| - 0.16 10.2 2.6 0.86 7.8 0.9 2.5 3 0 0 3 3 3 0 Bacterial membrane protein YfhO Microtub_bd PF16796.5 gi|219850763|ref|YP_002465195.1| - 0.43 10.5 1.6 27 4.7 0.0 3.1 3 0 0 3 3 3 0 Microtubule binding PAS_9 PF13426.7 gi|219850764|ref|YP_002465196.1| - 2.8e-31 107.8 0.1 2.3e-10 40.7 0.0 4.8 6 0 0 6 6 5 3 PAS domain PAS_4 PF08448.10 gi|219850764|ref|YP_002465196.1| - 1.2e-29 102.7 0.0 5.2e-12 46.0 0.0 4.7 5 0 0 5 5 5 3 PAS fold PAS PF00989.25 gi|219850764|ref|YP_002465196.1| - 1.7e-29 102.1 0.0 1.3e-16 60.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.12 gi|219850764|ref|YP_002465196.1| - 1.1e-26 92.7 2.0 2.1e-26 91.8 0.4 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.7 gi|219850764|ref|YP_002465196.1| - 2.6e-24 84.8 0.0 1.2e-07 31.6 0.0 3.8 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 gi|219850764|ref|YP_002465196.1| - 4.7e-20 71.8 0.0 1e-19 70.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|219850764|ref|YP_002465196.1| - 2e-18 66.5 0.0 5.3e-09 36.2 0.0 3.7 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|219850764|ref|YP_002465196.1| - 4.1e-07 30.5 0.0 2.2e-06 28.2 0.0 2.2 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|219850764|ref|YP_002465196.1| - 8.7e-07 29.6 0.0 2.5e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 HWE histidine kinase PAS_7 PF12860.7 gi|219850764|ref|YP_002465196.1| - 3.7e-06 27.1 0.8 0.16 12.1 0.0 4.3 3 1 0 3 3 3 1 PAS fold GAF_2 PF13185.6 gi|219850764|ref|YP_002465196.1| - 0.00011 22.5 0.0 0.00025 21.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|219850764|ref|YP_002465196.1| - 0.00036 21.2 0.0 0.0011 19.6 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|219850764|ref|YP_002465196.1| - 0.042 14.2 0.1 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 GAF domain TyeA PF09059.10 gi|219850764|ref|YP_002465196.1| - 0.096 12.8 0.0 0.31 11.2 0.0 1.9 1 0 0 1 1 1 0 TyeA eIF-5_eIF-2B PF01873.17 gi|219850765|ref|YP_002465197.1| - 4.3e-38 129.8 0.0 6.4e-38 129.2 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|219850765|ref|YP_002465197.1| - 2.1e-06 27.6 0.8 4.1e-06 26.7 0.1 1.8 2 0 0 2 2 2 1 TRAM domain Zn-ribbon_8 PF09723.10 gi|219850765|ref|YP_002465197.1| - 0.059 13.5 0.8 0.11 12.6 0.2 1.9 2 0 0 2 2 2 0 Zinc ribbon domain NMD3 PF04981.13 gi|219850765|ref|YP_002465197.1| - 0.084 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 NMD3 family Nudix_N_2 PF14803.6 gi|219850765|ref|YP_002465197.1| - 0.13 12.2 1.7 0.27 11.2 1.7 1.5 1 0 0 1 1 1 0 Nudix N-terminal DUF35_N PF12172.8 gi|219850765|ref|YP_002465197.1| - 0.33 10.9 2.3 1.1 9.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AIRS PF00586.24 gi|219850766|ref|YP_002465198.1| - 3.5e-43 146.2 1.3 5.7e-23 81.4 0.2 2.8 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|219850766|ref|YP_002465198.1| - 8.4e-31 107.2 1.5 8.6e-28 97.4 0.5 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|219850766|ref|YP_002465198.1| - 3.7e-07 30.6 0.1 9.1e-07 29.3 0.1 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain IlvN PF07991.12 gi|219850767|ref|YP_002465199.1| - 3.8e-74 247.7 0.2 5.2e-74 247.3 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|219850767|ref|YP_002465199.1| - 4e-61 205.5 0.1 5.3e-61 205.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.21 gi|219850767|ref|YP_002465199.1| - 9.3e-08 32.3 0.0 2.3e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|219850767|ref|YP_002465199.1| - 1.7e-05 24.2 0.0 2.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|219850767|ref|YP_002465199.1| - 7.6e-05 23.2 0.0 0.00018 22.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|219850767|ref|YP_002465199.1| - 0.00044 20.4 0.0 0.0011 19.2 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|219850767|ref|YP_002465199.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GCHY-1 PF02649.14 gi|219850768|ref|YP_002465200.1| - 4.8e-80 268.8 3.7 5.5e-80 268.6 3.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF3223 PF11523.8 gi|219850768|ref|YP_002465200.1| - 0.074 13.9 0.6 2.4 9.1 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3223) NiFeSe_Hases PF00374.19 gi|219850769|ref|YP_002465201.1| - 8.4e-30 104.1 10.0 9.4e-13 47.9 1.4 4.3 2 1 1 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.18 gi|219850770|ref|YP_002465202.1| - 2e-30 105.3 0.0 2.8e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.22 gi|219850771|ref|YP_002465203.1| - 1.4e-27 96.1 1.0 1.4e-27 96.1 1.0 2.1 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|219850771|ref|YP_002465203.1| - 7.5e-12 44.5 11.3 8.9e-08 31.6 1.3 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219850771|ref|YP_002465203.1| - 6.3e-11 42.7 22.7 1.8e-08 34.8 12.8 3.7 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219850771|ref|YP_002465203.1| - 6.6e-09 35.8 12.1 6.6e-09 35.8 12.1 3.2 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219850771|ref|YP_002465203.1| - 3.8e-08 33.4 11.6 3.8e-08 33.4 11.6 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219850771|ref|YP_002465203.1| - 9.1e-08 31.9 10.4 5.5e-05 23.1 1.9 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219850771|ref|YP_002465203.1| - 3.5e-06 27.0 22.9 1.8e-05 24.8 12.1 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219850771|ref|YP_002465203.1| - 9.7e-06 26.0 10.2 0.0007 20.1 1.5 3.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|219850771|ref|YP_002465203.1| - 0.00011 22.5 11.8 0.0033 17.8 2.6 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219850771|ref|YP_002465203.1| - 0.00014 21.8 13.9 0.0022 18.0 2.5 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219850771|ref|YP_002465203.1| - 0.0002 22.2 12.9 0.0011 19.9 3.9 3.6 4 1 1 5 5 4 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|219850771|ref|YP_002465203.1| - 0.029 14.8 2.9 0.029 14.8 2.9 3.6 2 1 2 4 4 4 0 4Fe-4S dicluster domain CofC PF01983.16 gi|219850771|ref|YP_002465203.1| - 0.076 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like Fer4_15 PF13459.6 gi|219850771|ref|YP_002465203.1| - 0.09 13.5 2.6 0.09 13.5 2.6 3.1 3 1 1 4 4 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|219850771|ref|YP_002465203.1| - 0.37 11.4 25.9 0.18 12.3 4.1 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219850771|ref|YP_002465203.1| - 1.3 9.3 13.0 1.3 9.3 10.3 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|219850772|ref|YP_002465204.1| - 2.4e-41 141.2 0.0 3.3e-41 140.7 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|219850772|ref|YP_002465204.1| - 3.7e-35 119.9 0.1 6.5e-35 119.1 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term TPR_1 PF00515.28 gi|219850773|ref|YP_002465205.1| - 2.3e-30 103.1 0.0 7.1e-09 35.1 0.0 5.5 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219850773|ref|YP_002465205.1| - 1.9e-26 91.4 0.9 2.2e-08 33.6 0.0 4.3 3 1 1 4 4 4 4 TPR repeat TPR_2 PF07719.17 gi|219850773|ref|YP_002465205.1| - 7.4e-26 88.1 0.0 1.1e-06 28.3 0.0 5.6 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219850773|ref|YP_002465205.1| - 8.7e-23 79.0 7.1 3e-08 33.5 0.0 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219850773|ref|YP_002465205.1| - 5.2e-20 69.9 0.0 2.9e-05 23.9 0.0 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219850773|ref|YP_002465205.1| - 1.2e-15 56.9 0.0 0.0003 21.4 0.0 4.5 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219850773|ref|YP_002465205.1| - 5.1e-13 49.1 0.0 2e-08 34.4 0.0 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219850773|ref|YP_002465205.1| - 1.3e-12 48.2 0.2 8.5e-05 23.1 0.0 3.7 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219850773|ref|YP_002465205.1| - 5e-11 42.9 0.1 1.2e-07 32.1 0.0 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219850773|ref|YP_002465205.1| - 5.4e-11 41.7 0.6 0.019 15.0 0.0 5.1 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219850773|ref|YP_002465205.1| - 6.4e-07 29.4 0.0 0.51 10.5 0.0 3.7 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|219850773|ref|YP_002465205.1| - 1.1e-06 28.9 0.2 0.18 12.5 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|219850773|ref|YP_002465205.1| - 8.8e-06 25.4 5.3 0.022 14.7 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|219850773|ref|YP_002465205.1| - 0.00011 21.5 0.4 0.2 10.8 0.0 2.6 1 1 2 3 3 3 2 Tetratricopeptide repeat MIT PF04212.18 gi|219850773|ref|YP_002465205.1| - 0.001 19.1 2.0 2 8.5 0.0 4.2 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain DUF1358 PF07096.11 gi|219850773|ref|YP_002465205.1| - 0.0058 16.6 0.0 2 8.4 0.0 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1358) ANAPC3 PF12895.7 gi|219850773|ref|YP_002465205.1| - 0.0098 16.1 0.2 0.03 14.6 0.0 1.9 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF739 PF05339.11 gi|219850773|ref|YP_002465205.1| - 0.022 14.9 1.1 20 5.4 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF739) TPR_3 PF07720.12 gi|219850773|ref|YP_002465205.1| - 0.026 14.5 0.1 0.82 9.7 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|219850773|ref|YP_002465205.1| - 0.042 12.8 0.2 0.055 12.5 0.2 1.2 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) SHNi-TPR PF10516.9 gi|219850773|ref|YP_002465205.1| - 0.052 13.0 0.0 18 4.9 0.0 3.2 3 0 0 3 3 3 0 SHNi-TPR Lectin_N PF03954.14 gi|219850773|ref|YP_002465205.1| - 0.13 12.0 1.0 0.24 11.1 1.0 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain SNARE_assoc PF09335.11 gi|219850774|ref|YP_002465206.1| - 4.7e-22 78.7 6.1 4.7e-22 78.7 6.1 2.2 2 1 0 2 2 2 1 SNARE associated Golgi protein Nramp PF01566.18 gi|219850775|ref|YP_002465207.1| - 2.7e-71 240.5 31.2 3.7e-71 240.0 31.2 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF5383 PF17355.2 gi|219850775|ref|YP_002465207.1| - 2.5 8.5 3.5 6.5 7.2 0.0 3.0 3 0 0 3 3 3 0 Family of unknown function (DUF5383) MgtE_N PF03448.17 gi|219850777|ref|YP_002465209.1| - 1.2e-22 80.4 8.0 2e-22 79.7 8.0 1.3 1 0 0 1 1 1 1 MgtE intracellular N domain CBS PF00571.28 gi|219850777|ref|YP_002465209.1| - 1.3e-14 54.4 3.3 1.9e-10 41.1 0.0 4.2 2 1 2 4 4 4 2 CBS domain PRC PF05239.16 gi|219850777|ref|YP_002465209.1| - 3e-06 27.2 1.0 0.0026 17.8 0.0 3.2 3 0 0 3 3 3 2 PRC-barrel domain FliG_M PF14841.6 gi|219850777|ref|YP_002465209.1| - 0.00023 21.3 2.0 0.11 12.8 0.1 2.8 1 1 2 3 3 3 3 FliG middle domain RRM_occluded PF16842.5 gi|219850777|ref|YP_002465209.1| - 0.049 13.5 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Occluded RNA-recognition motif FliG_C PF01706.16 gi|219850777|ref|YP_002465209.1| - 0.06 13.5 2.8 0.16 12.2 0.6 2.3 1 1 2 3 3 3 0 FliG C-terminal domain Oxidored_nitro PF00148.19 gi|219850778|ref|YP_002465210.1| - 1.1e-71 241.7 0.0 1.4e-71 241.3 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|219850779|ref|YP_002465211.1| - 3.2e-63 213.8 0.0 3.9e-63 213.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|219850780|ref|YP_002465212.1| - 3.7e-98 328.3 0.0 4.6e-98 328.0 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|219850780|ref|YP_002465212.1| - 7.4e-11 42.2 0.0 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|219850780|ref|YP_002465212.1| - 1e-08 35.3 0.1 2e-08 34.4 0.0 1.5 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|219850780|ref|YP_002465212.1| - 5.8e-06 25.9 0.2 7.1e-05 22.4 0.1 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|219850780|ref|YP_002465212.1| - 1.1e-05 24.8 0.1 2.1e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|219850780|ref|YP_002465212.1| - 0.0058 16.4 0.0 0.0084 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|219850780|ref|YP_002465212.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ MeaB PF03308.16 gi|219850780|ref|YP_002465212.1| - 0.022 13.8 0.1 0.036 13.0 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|219850780|ref|YP_002465212.1| - 0.14 12.5 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|219850780|ref|YP_002465212.1| - 0.15 12.4 0.1 0.41 11.0 0.1 1.7 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|219850780|ref|YP_002465212.1| - 0.2 11.7 0.7 0.39 10.8 0.7 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain HTH_24 PF13412.6 gi|219850782|ref|YP_002465214.1| - 2.9e-05 23.5 0.0 3.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|219850782|ref|YP_002465214.1| - 0.0071 16.8 0.0 0.0083 16.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|219850782|ref|YP_002465214.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.7 gi|219850782|ref|YP_002465214.1| - 0.017 15.2 0.0 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_43 PF09904.9 gi|219850782|ref|YP_002465214.1| - 0.063 13.2 0.0 0.064 13.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|219850782|ref|YP_002465214.1| - 0.078 12.9 0.2 0.1 12.6 0.2 1.3 1 1 0 1 1 1 0 HTH domain HTH_9 PF08221.11 gi|219850782|ref|YP_002465214.1| - 0.17 12.0 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Fer4_16 PF13484.6 gi|219850783|ref|YP_002465215.1| - 7.7e-10 39.6 7.5 1.2e-09 38.9 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|219850783|ref|YP_002465215.1| - 3.1e-07 30.9 10.2 5.4e-07 30.1 10.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219850783|ref|YP_002465215.1| - 1.1e-06 28.1 13.0 0.00047 19.8 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219850783|ref|YP_002465215.1| - 1.3e-05 25.1 10.3 0.024 14.7 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219850783|ref|YP_002465215.1| - 4.3e-05 23.6 8.9 8.7e-05 22.6 8.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219850783|ref|YP_002465215.1| - 0.0027 17.8 11.0 0.016 15.4 3.1 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219850783|ref|YP_002465215.1| - 0.0034 17.4 15.9 0.18 12.0 5.8 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219850783|ref|YP_002465215.1| - 0.0039 17.3 6.3 0.062 13.5 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219850783|ref|YP_002465215.1| - 0.0048 17.3 8.7 0.012 16.1 8.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219850783|ref|YP_002465215.1| - 0.0098 16.4 7.5 0.036 14.6 7.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain EccE PF11203.8 gi|219850783|ref|YP_002465215.1| - 0.012 16.0 0.1 0.066 13.6 0.0 2.2 2 1 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE Fer4_3 PF12798.7 gi|219850783|ref|YP_002465215.1| - 0.04 14.9 17.1 0.84 10.7 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219850783|ref|YP_002465215.1| - 0.24 12.0 14.6 0.93 10.2 3.4 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219850783|ref|YP_002465215.1| - 0.92 9.7 9.5 5.8 7.2 0.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain PKD PF00801.20 gi|219850784|ref|YP_002465216.1| - 1e-118 387.3 162.3 2.1e-13 49.9 8.1 14.0 15 0 0 15 15 15 11 PKD domain Malectin PF11721.8 gi|219850784|ref|YP_002465216.1| - 6.1e-27 94.7 0.4 1.4e-24 87.1 0.0 4.6 5 0 0 5 5 5 1 Malectin domain SdrD_B PF17210.3 gi|219850784|ref|YP_002465216.1| - 7.2e-10 39.1 2.1 7.2e-10 39.1 2.1 8.2 9 1 1 10 10 10 1 SdrD B-like domain Pilin_N PF07790.11 gi|219850784|ref|YP_002465216.1| - 1.5e-08 35.4 3.4 3.7e-08 34.2 0.1 3.5 3 0 0 3 3 3 1 Archaeal Type IV pilin, N-terminal DoxA PF07680.11 gi|219850784|ref|YP_002465216.1| - 0.015 15.2 0.0 1e+02 2.8 0.0 5.9 7 0 0 7 7 7 0 TQO small subunit DoxA DUF5011 PF16403.5 gi|219850784|ref|YP_002465216.1| - 0.03 14.4 0.2 0.03 14.4 0.2 9.4 9 0 0 9 9 9 0 Domain of unknown function (DUF5011) PKD_3 PF16820.5 gi|219850784|ref|YP_002465216.1| - 0.071 12.9 48.4 1.6 8.5 0.3 10.1 10 0 0 10 10 10 0 PKD-like domain ChitinaseA_N PF08329.10 gi|219850784|ref|YP_002465216.1| - 0.39 10.4 3.7 7.5 6.2 0.0 5.0 7 0 0 7 7 7 0 Chitinase A, N-terminal domain MG2 PF01835.19 gi|219850784|ref|YP_002465216.1| - 9.1 6.8 34.3 3.2 8.3 0.2 9.0 9 1 0 10 10 10 0 MG2 domain Pilin_N PF07790.11 gi|219850785|ref|YP_002465217.1| - 2.5e-11 44.3 0.0 1.5e-10 41.9 0.0 2.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal SdrD_B PF17210.3 gi|219850785|ref|YP_002465217.1| - 4.3e-11 43.0 2.4 4.3e-11 43.0 2.4 6.9 7 1 1 8 8 8 1 SdrD B-like domain Mucin15 PF15672.5 gi|219850785|ref|YP_002465217.1| - 4.3e-05 23.2 44.4 0.053 13.0 3.7 4.9 1 1 2 4 4 4 4 Cell-membrane associated Mucin15 DUF237 PF03072.14 gi|219850785|ref|YP_002465217.1| - 0.00017 21.6 0.4 24 5.0 0.0 5.3 5 0 0 5 5 5 0 Domain of unknown function (DUF237) Malectin PF11721.8 gi|219850785|ref|YP_002465217.1| - 0.0034 17.5 0.0 40 4.3 0.0 3.7 3 0 0 3 3 3 0 Malectin domain FKBP_C PF00254.28 gi|219850785|ref|YP_002465217.1| - 0.0046 17.3 1.6 55 4.2 0.0 6.5 7 1 0 8 8 8 0 FKBP-type peptidyl-prolyl cis-trans isomerase CarbopepD_reg_2 PF13715.6 gi|219850785|ref|YP_002465217.1| - 0.012 15.6 3.1 0.069 13.2 0.0 3.8 3 0 0 3 3 3 0 CarboxypepD_reg-like domain Ig_mannosidase PF17753.1 gi|219850785|ref|YP_002465217.1| - 5 6.9 12.3 1.2e+02 2.6 0.0 5.8 6 3 0 6 6 6 0 Ig-fold domain Pilin_N PF07790.11 gi|219850786|ref|YP_002465218.1| - 0.014 16.3 0.6 0.11 13.4 0.1 2.6 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|219850787|ref|YP_002465219.1| - 4.5e-08 33.9 1.0 4.5e-08 33.9 1.0 2.0 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Beta_helix PF13229.6 gi|219850787|ref|YP_002465219.1| - 0.00036 20.4 39.7 0.14 12.0 31.5 3.9 2 1 0 2 2 2 1 Right handed beta helix region Beta_helix PF13229.6 gi|219850789|ref|YP_002465221.1| - 7.6e-09 35.6 10.5 9e-05 22.4 4.8 3.0 1 1 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|219850789|ref|YP_002465221.1| - 3.3e-07 30.4 3.7 2.9e-06 27.3 0.4 2.4 2 0 0 2 2 2 2 Pectate lyase superfamily protein Fer4_14 PF13394.6 gi|219850790|ref|YP_002465222.1| - 4.3e-05 23.6 0.0 9.5e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|219850790|ref|YP_002465222.1| - 6.9e-05 23.3 0.0 0.00052 20.4 0.0 2.3 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219850790|ref|YP_002465222.1| - 0.00028 21.2 0.0 0.00051 20.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Prenyltransf PF01255.19 gi|219850791|ref|YP_002465223.1| - 3.5e-68 229.5 0.0 3.9e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase zinc_ribbon_2 PF13240.6 gi|219850792|ref|YP_002465224.1| - 0.00027 20.5 2.3 0.00044 19.9 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|219850792|ref|YP_002465224.1| - 0.0011 18.3 0.7 0.002 17.5 0.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219850792|ref|YP_002465224.1| - 0.0026 17.7 0.7 0.0049 16.9 0.7 1.4 1 0 0 1 1 1 1 Double zinc ribbon SQS_PSY PF00494.19 gi|219850792|ref|YP_002465224.1| - 0.025 14.1 0.7 0.041 13.4 0.7 1.2 1 0 0 1 1 1 0 Squalene/phytoene synthase Receptor_2B4 PF11465.8 gi|219850792|ref|YP_002465224.1| - 0.1 12.8 0.1 0.19 11.9 0.1 1.4 1 0 0 1 1 1 0 Natural killer cell receptor 2B4 TNFR_16_TM PF18422.1 gi|219850792|ref|YP_002465224.1| - 0.21 11.6 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain zinc_ribbon_15 PF17032.5 gi|219850792|ref|YP_002465224.1| - 0.91 10.3 2.7 1.5 9.6 2.7 1.4 1 0 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|219850792|ref|YP_002465224.1| - 0.96 9.4 5.9 4 7.4 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal Prenyltransf PF01255.19 gi|219850795|ref|YP_002465227.1| - 1.1e-21 77.5 0.0 3.2e-21 75.9 0.0 1.7 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase HHH_8 PF14716.6 gi|219850796|ref|YP_002465228.1| - 5.1e-21 74.8 0.1 6.2e-19 68.1 0.0 3.3 2 1 1 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|219850796|ref|YP_002465228.1| - 2.7e-18 65.9 0.0 6.1e-18 64.8 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|219850796|ref|YP_002465228.1| - 1e-12 48.5 0.1 1.3e-07 32.1 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain DNA_pol_B_palm PF14792.6 gi|219850796|ref|YP_002465228.1| - 1.1e-07 32.1 0.3 2.7e-07 30.8 0.1 1.8 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.23 gi|219850796|ref|YP_002465228.1| - 1.3e-05 24.9 0.1 0.038 13.9 0.1 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|219850796|ref|YP_002465228.1| - 0.0014 18.5 0.0 0.075 12.9 0.0 2.6 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda PHP PF02811.19 gi|219850796|ref|YP_002465228.1| - 0.0099 16.2 0.0 0.017 15.5 0.0 1.5 1 0 0 1 1 1 1 PHP domain Cdd1 PF11731.8 gi|219850796|ref|YP_002465228.1| - 0.024 14.8 0.0 3.4 8.0 0.0 2.5 1 1 1 2 2 2 0 Pathogenicity locus DUF1059 PF06348.11 gi|219850796|ref|YP_002465228.1| - 0.057 13.7 0.2 0.47 10.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1059) HHH_2 PF12826.7 gi|219850796|ref|YP_002465228.1| - 0.063 13.4 0.0 3.8 7.7 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|219850796|ref|YP_002465228.1| - 0.15 12.4 0.0 8.9 6.7 0.0 3.1 3 0 0 3 3 3 0 Helix-hairpin-helix motif Fe_dep_repr_C PF02742.15 gi|219850797|ref|YP_002465229.1| - 4.1e-22 78.0 0.0 6.9e-22 77.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|219850797|ref|YP_002465229.1| - 2.5e-11 43.7 0.1 5.1e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 FeoA domain AAA_assoc_C PF09821.9 gi|219850797|ref|YP_002465229.1| - 0.0047 17.4 0.1 0.055 14.0 0.0 2.1 2 0 0 2 2 2 1 C-terminal AAA-associated domain MarR_2 PF12802.7 gi|219850797|ref|YP_002465229.1| - 0.0056 16.5 0.4 0.094 12.6 0.2 2.5 2 0 0 2 2 2 1 MarR family FeoB_N PF02421.18 gi|219850798|ref|YP_002465230.1| - 6.8e-43 145.9 0.2 1.3e-42 145.0 0.1 1.6 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.14 gi|219850798|ref|YP_002465230.1| - 1.2e-19 70.6 28.4 1.6e-12 47.6 2.7 3.3 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|219850798|ref|YP_002465230.1| - 7.2e-14 51.9 0.0 1.2e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|219850798|ref|YP_002465230.1| - 5.7e-11 41.9 2.7 5.7e-11 41.9 2.7 3.4 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|219850798|ref|YP_002465230.1| - 0.00015 21.2 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|219850798|ref|YP_002465230.1| - 0.064 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Roc PF08477.13 gi|219850798|ref|YP_002465230.1| - 0.19 12.0 0.0 0.39 11.0 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|219850798|ref|YP_002465230.1| - 0.24 11.3 0.6 12 5.8 0.1 2.3 2 0 0 2 2 2 0 RsgA GTPase ATPase PF06745.13 gi|219850799|ref|YP_002465231.1| - 0.00038 19.9 0.0 0.0013 18.2 0.0 1.9 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|219850799|ref|YP_002465231.1| - 0.0027 16.9 1.3 0.17 11.0 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein TP_methylase PF00590.20 gi|219850800|ref|YP_002465232.1| - 1.9e-20 73.7 0.8 2.2e-20 73.5 0.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.13 gi|219850801|ref|YP_002465233.1| - 2.5e-39 133.2 0.0 7.6e-20 70.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF357) MannoseP_isomer PF01050.18 gi|219850802|ref|YP_002465234.1| - 2.3e-58 196.4 0.1 4e-58 195.6 0.1 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|219850802|ref|YP_002465234.1| - 2.2e-53 181.4 0.0 4.1e-53 180.5 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|219850802|ref|YP_002465234.1| - 6e-10 39.7 1.8 3.5e-09 37.2 0.1 2.4 2 1 0 2 2 2 1 MobA-like NTP transferase domain Cupin_2 PF07883.11 gi|219850802|ref|YP_002465234.1| - 1.6e-08 34.1 0.1 4.4e-08 32.7 0.1 1.8 1 0 0 1 1 1 1 Cupin domain E1-E2_ATPase PF00122.20 gi|219850803|ref|YP_002465235.1| - 2.2e-55 187.0 9.6 5.4e-55 185.7 2.6 2.6 2 0 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.26 gi|219850803|ref|YP_002465235.1| - 4.7e-45 154.4 10.5 1.4e-44 152.9 8.4 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|219850803|ref|YP_002465235.1| - 9.3e-32 109.3 0.6 1.7e-14 54.0 0.0 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.7 gi|219850803|ref|YP_002465235.1| - 2.9e-05 24.5 0.2 0.00016 22.1 0.2 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|219850803|ref|YP_002465235.1| - 0.0021 17.9 0.1 0.0046 16.7 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase FeS_assembly_P PF01883.19 gi|219850803|ref|YP_002465235.1| - 0.38 11.0 6.0 4.5 7.5 0.1 3.7 3 0 0 3 3 3 0 Iron-sulfur cluster assembly protein Glycos_transf_2 PF00535.26 gi|219850805|ref|YP_002465237.1| - 0.066 13.0 0.0 0.091 12.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 TPR_1 PF00515.28 gi|219850808|ref|YP_002465240.1| - 4.1e-12 45.4 0.0 3.4e-05 23.5 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219850808|ref|YP_002465240.1| - 5.7e-12 44.8 0.0 9.9e-05 22.2 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219850808|ref|YP_002465240.1| - 5.2e-10 38.7 0.0 0.00024 21.0 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219850808|ref|YP_002465240.1| - 6.5e-10 38.5 0.2 0.00057 19.5 0.0 2.4 2 1 0 2 2 2 2 TPR repeat TPR_16 PF13432.6 gi|219850808|ref|YP_002465240.1| - 1.4e-08 35.2 0.1 2.7e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219850808|ref|YP_002465240.1| - 1.5e-08 34.8 0.2 0.00057 20.5 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219850808|ref|YP_002465240.1| - 1.6e-07 31.5 0.5 0.0065 16.7 0.1 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219850808|ref|YP_002465240.1| - 1.5e-06 28.3 0.2 4.5e-06 26.7 0.2 1.7 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219850808|ref|YP_002465240.1| - 4e-06 27.2 0.2 6.8e-06 26.5 0.2 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219850808|ref|YP_002465240.1| - 1.4e-05 25.1 0.0 0.0013 19.0 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219850808|ref|YP_002465240.1| - 0.00023 21.0 0.8 0.064 13.3 0.1 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat MIT PF04212.18 gi|219850808|ref|YP_002465240.1| - 0.0065 16.5 0.3 0.071 13.2 0.1 2.5 2 1 1 3 3 3 1 MIT (microtubule interacting and transport) domain ANAPC3 PF12895.7 gi|219850808|ref|YP_002465240.1| - 0.077 13.2 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|219850808|ref|YP_002465240.1| - 0.086 12.7 0.5 4.4 7.3 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Ubiq-assoc PF09145.10 gi|219850808|ref|YP_002465240.1| - 0.14 12.1 0.1 3.1 7.9 0.0 2.3 1 1 1 2 2 2 0 Ubiquitin-associated NARP1 PF12569.8 gi|219850808|ref|YP_002465240.1| - 0.16 10.9 0.0 0.2 10.5 0.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 CRISPR_Cas6 PF10040.9 gi|219850809|ref|YP_002465241.1| - 8.2e-14 52.0 0.0 1.3e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Tli4_N PF18443.1 gi|219850809|ref|YP_002465241.1| - 0.13 12.6 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Tle cognate immunity protein 4 N-terminal domain Csc2 PF18320.1 gi|219850811|ref|YP_002465243.1| - 6.7e-47 159.9 0.0 8.2e-47 159.6 0.0 1.1 1 0 0 1 1 1 1 Csc2 Crispr Beta_helix PF13229.6 gi|219850813|ref|YP_002465245.1| - 2.5e-13 50.2 28.8 9.2e-10 38.6 27.5 2.4 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|219850813|ref|YP_002465245.1| - 0.00016 21.6 19.0 0.0047 16.8 8.3 2.8 1 1 1 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|219850814|ref|YP_002465246.1| - 9.3e-11 41.8 35.5 8.5e-09 35.4 20.7 2.7 1 1 1 2 2 2 2 Right handed beta helix region Hexapep_2 PF14602.6 gi|219850815|ref|YP_002465247.1| - 2.3e-08 33.6 3.1 1.5e-06 27.8 0.2 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|219850815|ref|YP_002465247.1| - 5.8e-07 29.0 8.1 2e-06 27.3 1.4 3.7 3 1 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) DUF4474 PF14751.6 gi|219850815|ref|YP_002465247.1| - 0.096 12.1 0.1 0.19 11.1 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4474) YHS PF04945.13 gi|219850816|ref|YP_002465248.1| - 3e-19 68.8 1.9 3.1e-19 68.8 1.9 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|219850816|ref|YP_002465248.1| - 0.00096 19.4 1.1 0.0011 19.2 1.1 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|219850816|ref|YP_002465248.1| - 0.0053 17.5 0.2 0.0063 17.2 0.2 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase GalKase_gal_bdg PF10509.9 gi|219850816|ref|YP_002465248.1| - 0.13 11.8 0.2 0.25 11.0 0.2 1.6 1 1 0 1 1 1 0 Galactokinase galactose-binding signature DUF5612 PF18462.1 gi|219850817|ref|YP_002465249.1| - 7.4e-71 236.6 4.8 7.4e-71 236.6 4.8 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|219850817|ref|YP_002465249.1| - 5.2e-09 35.7 0.4 3.1e-08 33.2 0.1 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|219850817|ref|YP_002465249.1| - 1.6e-08 35.0 0.0 3.6e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain Peripla_BP_4 PF13407.6 gi|219850817|ref|YP_002465249.1| - 0.0056 16.3 0.0 0.0091 15.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain ACT_6 PF13740.6 gi|219850817|ref|YP_002465249.1| - 0.0061 16.5 0.1 0.021 14.8 0.0 1.9 2 0 0 2 2 2 1 ACT domain Sua5_yciO_yrdC PF01300.18 gi|219850818|ref|YP_002465250.1| - 8.6e-46 155.7 0.0 9.8e-46 155.5 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.23 gi|219850819|ref|YP_002465251.1| - 1.5e-05 25.2 0.0 0.00018 21.7 0.0 2.2 1 1 1 2 2 2 1 Nucleotidyltransferase domain Cas_Cas4 PF01930.17 gi|219850820|ref|YP_002465252.1| - 0.00038 20.6 0.0 0.00055 20.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 Csa1 PF06023.12 gi|219850820|ref|YP_002465252.1| - 0.0032 16.9 0.1 0.0049 16.3 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|219850820|ref|YP_002465252.1| - 0.018 14.9 0.3 0.25 11.2 0.1 2.1 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Whib PF02467.16 gi|219850820|ref|YP_002465252.1| - 0.37 11.4 2.1 0.96 10.1 1.2 2.2 1 1 1 2 2 2 0 Transcription factor WhiB TPP_enzyme_N PF02776.18 gi|219850821|ref|YP_002465253.1| - 2e-50 170.8 2.6 1.3e-46 158.4 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|219850821|ref|YP_002465253.1| - 9.8e-40 135.8 0.9 2.7e-39 134.4 0.9 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|219850821|ref|YP_002465253.1| - 1.1e-27 96.4 0.0 2e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rubredoxin PF00301.20 gi|219850821|ref|YP_002465253.1| - 7.9e-21 73.8 2.6 1.4e-20 73.0 2.6 1.4 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|219850821|ref|YP_002465253.1| - 0.16 12.1 0.2 0.33 11.1 0.2 1.6 1 0 0 1 1 1 0 PHD-finger Vps36-NZF-N PF16988.5 gi|219850821|ref|YP_002465253.1| - 0.7 9.3 2.0 13 5.3 0.1 2.4 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain eIF-1a PF01176.19 gi|219850822|ref|YP_002465254.1| - 2.7e-18 65.5 2.7 4.2e-18 64.9 1.4 1.7 1 1 1 2 2 2 1 Translation initiation factor 1A / IF-1 Acetyltransf_10 PF13673.7 gi|219850823|ref|YP_002465255.1| - 9.8e-09 35.2 0.2 1.8e-08 34.4 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|219850823|ref|YP_002465255.1| - 1.6e-07 31.6 0.0 2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|219850823|ref|YP_002465255.1| - 3.3e-07 30.6 0.0 4.2e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|219850823|ref|YP_002465255.1| - 0.00067 19.6 0.1 0.0017 18.3 0.1 1.8 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|219850823|ref|YP_002465255.1| - 0.003 17.6 0.1 0.14 12.2 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|219850823|ref|YP_002465255.1| - 0.01 15.9 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|219850823|ref|YP_002465255.1| - 0.033 13.8 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|219850823|ref|YP_002465255.1| - 0.18 11.2 0.0 0.3 10.5 0.0 1.5 1 1 0 1 1 1 0 Putative acetyl-transferase Aldo_ket_red PF00248.21 gi|219850824|ref|YP_002465256.1| - 2e-24 86.3 0.0 4.3e-22 78.6 0.0 2.0 2 0 0 2 2 2 2 Aldo/keto reductase family GAF_2 PF13185.6 gi|219850825|ref|YP_002465257.1| - 3.7e-29 101.8 0.0 9.6e-29 100.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|219850825|ref|YP_002465257.1| - 1.7e-28 98.9 0.1 1.1e-09 38.5 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219850825|ref|YP_002465257.1| - 4.1e-27 94.4 0.6 5.7e-12 45.6 0.0 4.6 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|219850825|ref|YP_002465257.1| - 1.5e-23 82.9 0.7 1.1e-05 25.6 0.0 5.0 4 1 1 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|219850825|ref|YP_002465257.1| - 5e-22 77.5 0.7 8.1e-08 32.1 0.1 3.9 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 gi|219850825|ref|YP_002465257.1| - 5.1e-22 78.2 0.0 1.2e-21 77.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|219850825|ref|YP_002465257.1| - 1.3e-20 73.7 0.1 9.6e-07 29.0 0.0 5.1 5 0 0 5 5 5 4 PAS fold GAF_3 PF13492.6 gi|219850825|ref|YP_002465257.1| - 0.00015 22.2 0.0 0.00072 19.9 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|219850825|ref|YP_002465257.1| - 0.0039 17.3 1.2 18 5.5 0.0 4.7 4 1 0 4 4 4 0 PAS fold SpoVT_C PF15714.5 gi|219850825|ref|YP_002465257.1| - 0.074 13.1 0.0 6.7 6.8 0.0 3.0 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor ABC2_membrane_3 PF12698.7 gi|219850827|ref|YP_002465259.1| - 1.3e-16 60.7 7.7 2.3e-16 59.9 7.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|219850827|ref|YP_002465259.1| - 1.1e-10 41.3 5.4 2.3e-10 40.2 5.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|219850827|ref|YP_002465259.1| - 5.8e-05 23.1 7.4 5.8e-05 23.1 7.4 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|219850827|ref|YP_002465259.1| - 0.19 11.3 17.3 0.012 15.2 10.6 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|219850828|ref|YP_002465260.1| - 2.4e-13 49.9 18.3 2.4e-13 49.9 18.3 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|219850829|ref|YP_002465261.1| - 3.3e-30 105.4 0.0 4.9e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219850829|ref|YP_002465261.1| - 8.3e-10 39.0 0.4 0.0013 18.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|219850829|ref|YP_002465261.1| - 0.00017 22.2 0.9 0.0002 21.9 0.9 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|219850829|ref|YP_002465261.1| - 0.0028 17.1 0.2 2 7.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|219850829|ref|YP_002465261.1| - 0.005 16.6 0.1 0.058 13.1 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|219850829|ref|YP_002465261.1| - 0.01 15.6 0.2 0.019 14.7 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|219850829|ref|YP_002465261.1| - 0.036 14.8 0.0 0.084 13.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 gi|219850829|ref|YP_002465261.1| - 0.1 12.5 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|219850829|ref|YP_002465261.1| - 0.11 12.1 0.2 0.25 11.0 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|219850829|ref|YP_002465261.1| - 0.15 10.6 0.2 0.63 8.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|219850829|ref|YP_002465261.1| - 0.19 11.2 0.1 0.67 9.5 0.1 1.8 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain PIF1 PF05970.14 gi|219850829|ref|YP_002465261.1| - 0.22 10.6 0.2 0.86 8.7 0.1 1.8 2 0 0 2 2 2 0 PIF1-like helicase TrkA_N PF02254.18 gi|219850830|ref|YP_002465262.1| - 1.4e-16 60.8 0.1 5.6e-16 58.8 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.20 gi|219850830|ref|YP_002465262.1| - 6.7e-15 55.2 0.2 1.2e-14 54.4 0.2 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|219850830|ref|YP_002465262.1| - 1.7e-11 44.7 0.0 5.4e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 DHHA1 domain Sacchrp_dh_NADP PF03435.18 gi|219850830|ref|YP_002465262.1| - 4.4e-05 23.8 0.0 0.00028 21.1 0.0 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|219850830|ref|YP_002465262.1| - 0.00092 19.3 0.0 0.0028 17.7 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|219850830|ref|YP_002465262.1| - 0.0088 16.6 0.0 0.069 13.7 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|219850830|ref|YP_002465262.1| - 0.017 15.3 0.0 0.035 14.3 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|219850830|ref|YP_002465262.1| - 0.062 13.7 0.1 0.22 12.0 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding ThiF PF00899.21 gi|219850830|ref|YP_002465262.1| - 0.066 12.5 0.0 4 6.7 0.0 2.1 2 0 0 2 2 2 0 ThiF family ApbA PF02558.16 gi|219850830|ref|YP_002465262.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MAF_flag10 PF01973.18 gi|219850831|ref|YP_002465263.1| - 7.8e-25 87.5 0.0 1e-24 87.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Radical_SAM PF04055.21 gi|219850832|ref|YP_002465264.1| - 8.5e-15 55.5 0.0 1.3e-14 54.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|219850832|ref|YP_002465264.1| - 0.00084 19.1 0.0 0.0094 15.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|219850832|ref|YP_002465264.1| - 0.0019 18.4 0.0 0.0049 17.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|219850832|ref|YP_002465264.1| - 0.035 14.7 0.7 0.2 12.3 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain CBS PF00571.28 gi|219850833|ref|YP_002465265.1| - 7.2e-29 100.0 3.4 7.4e-16 58.4 0.6 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|219850833|ref|YP_002465265.1| - 3.2e-12 46.3 9.0 3.6e-08 33.0 1.1 2.9 2 1 1 3 3 3 2 Peptidase family M50 FA_desaturase PF00487.24 gi|219850833|ref|YP_002465265.1| - 0.042 13.7 0.1 0.042 13.7 0.1 2.6 2 1 0 2 2 2 0 Fatty acid desaturase PRC PF05239.16 gi|219850834|ref|YP_002465266.1| - 5.4e-11 42.4 3.0 6.1e-11 42.3 3.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain Thg1 PF04446.12 gi|219850835|ref|YP_002465267.1| - 1.5e-22 79.9 0.0 2.4e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|219850835|ref|YP_002465267.1| - 0.0018 18.4 0.0 0.0025 18.0 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain tRNA-synt_1 PF00133.22 gi|219850836|ref|YP_002465268.1| - 1.1e-185 618.4 0.1 1.5e-185 617.9 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|219850836|ref|YP_002465268.1| - 1.9e-29 102.6 0.0 3.6e-29 101.7 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|219850836|ref|YP_002465268.1| - 1.2e-28 100.0 0.6 7.4e-10 38.1 0.1 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|219850836|ref|YP_002465268.1| - 5.1e-08 32.6 0.1 1.3e-07 31.3 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|219850836|ref|YP_002465268.1| - 0.00022 20.3 0.0 0.00083 18.4 0.0 1.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) zf-trcl PF13451.6 gi|219850836|ref|YP_002465268.1| - 0.32 10.9 3.9 0.47 10.4 0.2 2.8 2 0 0 2 2 2 0 Probable zinc-ribbon domain LDcluster4 PF18306.1 gi|219850837|ref|YP_002465269.1| - 7e-40 136.2 5.8 7.9e-40 136.0 5.8 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|219850837|ref|YP_002465269.1| - 1.8e-06 28.1 0.1 3.4e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|219850837|ref|YP_002465269.1| - 0.0006 19.1 5.8 0.001 18.4 2.2 2.0 2 0 0 2 2 2 1 DNA recombination-mediator protein A FliO PF04347.13 gi|219850837|ref|YP_002465269.1| - 0.077 13.3 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Flagellar biosynthesis protein, FliO PBP_like PF12727.7 gi|219850838|ref|YP_002465270.1| - 3.3e-55 186.2 0.0 8.4e-55 184.9 0.0 1.7 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.17 gi|219850838|ref|YP_002465270.1| - 5.3e-35 120.5 2.0 8.7e-35 119.8 2.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|219850838|ref|YP_002465270.1| - 1.7e-20 73.2 0.1 3.4e-20 72.2 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|219850838|ref|YP_002465270.1| - 1.8e-09 37.6 0.2 6.6e-09 35.8 0.2 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.20 gi|219850838|ref|YP_002465270.1| - 1.2e-05 24.8 0.1 0.00036 19.9 0.1 3.1 2 1 1 3 3 3 2 LysR substrate binding domain MoeA_N PF03453.17 gi|219850839|ref|YP_002465271.1| - 4.3e-44 150.1 1.6 7.7e-44 149.2 1.6 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 gi|219850839|ref|YP_002465271.1| - 5.5e-20 71.3 0.0 1e-18 67.3 0.0 3.0 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) MoCF_biosynth PF00994.24 gi|219850839|ref|YP_002465271.1| - 2.8e-19 69.2 0.2 6.2e-19 68.1 0.2 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain FIST PF08495.10 gi|219850839|ref|YP_002465271.1| - 0.02 14.9 1.6 0.1 12.6 0.5 2.5 2 1 0 2 2 2 0 FIST N domain PAS_9 PF13426.7 gi|219850841|ref|YP_002465273.1| - 3.3e-15 56.2 0.0 8.3e-09 35.6 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|219850841|ref|YP_002465273.1| - 4.5e-11 42.5 0.3 5.7e-06 26.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|219850841|ref|YP_002465273.1| - 1.1e-09 38.8 0.0 2.3e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219850841|ref|YP_002465273.1| - 2.3e-09 37.3 0.0 0.001 19.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|219850841|ref|YP_002465273.1| - 0.00023 21.4 0.1 0.22 11.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|219850841|ref|YP_002465273.1| - 0.0014 18.9 0.0 0.0071 16.6 0.0 2.2 2 0 0 2 2 2 1 PAS fold SPOB_a PF14689.6 gi|219850841|ref|YP_002465273.1| - 0.012 15.3 0.1 0.8 9.5 0.1 2.4 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain tRNA_deacylase PF04414.12 gi|219850842|ref|YP_002465274.1| - 2.4e-61 206.9 0.0 3.3e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|219850843|ref|YP_002465275.1| - 2.1e-44 152.1 0.1 3.5e-44 151.4 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|219850843|ref|YP_002465275.1| - 8e-35 119.0 0.9 2.2e-34 117.6 0.9 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|219850843|ref|YP_002465275.1| - 0.00032 20.6 0.9 0.0056 16.6 0.2 2.3 1 1 0 2 2 2 1 NAD(P)H-binding SecE PF00584.20 gi|219850844|ref|YP_002465276.1| - 5.2e-08 32.7 0.5 5.9e-08 32.5 0.5 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|219850845|ref|YP_002465277.1| - 1.3e-21 76.2 0.1 2.1e-21 75.6 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|219850845|ref|YP_002465277.1| - 4.9e-05 23.1 2.0 0.00044 20.1 0.1 2.4 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|219850845|ref|YP_002465277.1| - 0.01 16.3 0.0 0.1 13.1 0.0 2.3 2 1 0 2 2 2 0 Transcription termination factor nusG ssDNA-exonuc_C PF10141.9 gi|219850845|ref|YP_002465277.1| - 0.056 13.1 0.1 0.072 12.7 0.1 1.1 1 0 0 1 1 1 0 Single-strand DNA-specific exonuclease, C terminal domain Glyco_hydro_65C PF03633.15 gi|219850845|ref|YP_002465277.1| - 0.082 12.8 0.2 0.2 11.6 0.2 1.7 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_L11_N PF03946.14 gi|219850846|ref|YP_002465278.1| - 5.8e-24 83.7 1.4 5.8e-24 83.7 1.4 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|219850846|ref|YP_002465278.1| - 2.7e-18 66.2 0.4 4.6e-18 65.5 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|219850847|ref|YP_002465279.1| - 1.5e-45 155.4 0.0 1.9e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Pup PF05639.11 gi|219850847|ref|YP_002465279.1| - 0.018 16.0 0.1 0.041 14.8 0.0 1.6 2 0 0 2 2 2 0 Pup-like protein Ribosomal_L10 PF00466.20 gi|219850848|ref|YP_002465280.1| - 1.1e-23 83.2 0.0 1.8e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|219850848|ref|YP_002465280.1| - 3.7e-21 74.9 1.0 7.1e-21 74.0 1.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|219850849|ref|YP_002465281.1| - 4.4e-19 68.9 18.4 5.3e-19 68.6 18.4 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|219850849|ref|YP_002465281.1| - 0.012 15.8 2.9 0.017 15.3 2.9 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Type2_restr_D3 PF16902.5 gi|219850849|ref|YP_002465281.1| - 0.036 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain EF-hand_14 PF17959.1 gi|219850849|ref|YP_002465281.1| - 0.15 12.4 0.0 0.21 12.0 0.0 1.2 1 0 0 1 1 1 0 EF-hand domain GPDPase_memb PF10110.9 gi|219850850|ref|YP_002465282.1| - 1.9e-07 30.2 21.5 0.00026 19.9 5.4 2.1 2 0 0 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase Choline_transpo PF04515.12 gi|219850850|ref|YP_002465282.1| - 8.3 5.5 34.3 5.4e+02 -0.4 34.4 2.7 1 1 0 1 1 1 0 Plasma-membrane choline transporter Ion_trans PF00520.31 gi|219850851|ref|YP_002465283.1| - 4.2e-26 91.7 10.3 5e-26 91.4 10.3 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|219850851|ref|YP_002465283.1| - 3.2e-16 59.1 2.2 3.2e-16 59.1 2.2 2.4 2 1 1 3 3 3 1 Ion channel zf-ribbon_3 PF13248.6 gi|219850851|ref|YP_002465283.1| - 0.059 12.8 0.5 0.12 11.9 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.6 gi|219850851|ref|YP_002465283.1| - 0.12 12.4 0.3 0.23 11.5 0.3 1.4 1 0 0 1 1 1 0 YhfH-like protein DUF1634 PF07843.11 gi|219850851|ref|YP_002465283.1| - 0.15 12.1 4.9 0.39 10.8 0.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1634) Imm70 PF15601.6 gi|219850852|ref|YP_002465284.1| - 0.13 11.8 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 Immunity protein 70 DUF3237 PF11578.8 gi|219850853|ref|YP_002465285.1| - 0.044 13.6 0.2 0.044 13.6 0.2 3.9 1 1 2 4 4 4 0 Protein of unknown function (DUF3237) DUF1180 PF06679.12 gi|219850853|ref|YP_002465285.1| - 1.3 9.4 3.8 2.2 8.7 2.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) PAS PF00989.25 gi|219850854|ref|YP_002465286.1| - 2e-23 82.5 0.3 1.4e-10 41.2 0.0 2.9 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|219850854|ref|YP_002465286.1| - 3.2e-22 78.8 0.0 8.8e-22 77.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219850854|ref|YP_002465286.1| - 1.7e-20 73.2 0.6 3.8e-09 36.7 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|219850854|ref|YP_002465286.1| - 1.6e-19 70.2 0.0 6.5e-16 58.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|219850854|ref|YP_002465286.1| - 3.3e-13 49.7 0.0 1.2e-10 41.6 0.0 3.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|219850854|ref|YP_002465286.1| - 4.3e-12 45.8 0.0 1.5e-05 24.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|219850854|ref|YP_002465286.1| - 4.6e-09 36.8 0.0 1.1e-08 35.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|219850854|ref|YP_002465286.1| - 0.00093 19.3 0.0 0.0023 18.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain DUF4325 PF14213.6 gi|219850854|ref|YP_002465286.1| - 0.0041 16.8 0.5 0.011 15.5 0.5 1.7 1 0 0 1 1 1 1 STAS-like domain of unknown function (DUF4325) CNP1 PF08750.11 gi|219850854|ref|YP_002465286.1| - 0.035 14.0 0.0 0.1 12.6 0.0 1.8 1 0 0 1 1 1 0 CNP1-like family TyeA PF09059.10 gi|219850854|ref|YP_002465286.1| - 0.067 13.3 0.2 3.5 7.8 0.0 2.6 2 0 0 2 2 2 0 TyeA Mt_ATP-synt_B PF05405.14 gi|219850854|ref|YP_002465286.1| - 2.4 7.7 5.7 0.88 9.2 0.7 2.5 3 0 0 3 3 3 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) PRAI PF00697.22 gi|219850855|ref|YP_002465287.1| - 4e-27 95.3 0.0 9.9e-27 94.0 0.0 1.6 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NanE PF04131.14 gi|219850855|ref|YP_002465287.1| - 0.078 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Glycos_transf_1 PF00534.20 gi|219850856|ref|YP_002465288.1| - 3.2e-21 75.6 0.0 5.4e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219850856|ref|YP_002465288.1| - 8.2e-20 71.6 0.0 7.2e-19 68.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219850856|ref|YP_002465288.1| - 4.5e-13 49.5 1.1 1.2e-11 44.9 0.3 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|219850856|ref|YP_002465288.1| - 3.1e-09 37.5 5.6 1.1e-07 32.4 0.1 2.4 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|219850856|ref|YP_002465288.1| - 1.7e-05 25.1 0.1 3.6e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|219850856|ref|YP_002465288.1| - 0.17 11.9 0.0 5 7.2 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like Polysacc_synt_3 PF13440.6 gi|219850857|ref|YP_002465289.1| - 2.3e-80 270.0 12.3 2.3e-80 270.0 12.3 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|219850857|ref|YP_002465289.1| - 4.7e-50 170.5 20.2 4.7e-50 170.5 20.2 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|219850857|ref|YP_002465289.1| - 7.1e-11 42.4 16.9 7.1e-11 42.4 16.9 3.6 3 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain SecE PF00584.20 gi|219850857|ref|YP_002465289.1| - 0.17 11.8 0.1 0.17 11.8 0.1 3.5 3 1 1 4 4 4 0 SecE/Sec61-gamma subunits of protein translocation complex DUF4981 PF16353.5 gi|219850858|ref|YP_002465290.1| - 0.019 15.4 0.2 0.09 13.3 0.2 2.2 1 0 0 1 1 1 0 Domain of unknown function(DUF4981) DUF4430 PF14478.6 gi|219850860|ref|YP_002465292.1| - 4.1e-14 52.9 3.0 5.4e-06 26.9 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4430) Oxidored_molyb PF00174.19 gi|219850860|ref|YP_002465292.1| - 0.00013 21.6 0.0 0.035 13.7 0.0 2.3 2 0 0 2 2 2 2 Oxidoreductase molybdopterin binding domain Sua5_yciO_yrdC PF01300.18 gi|219850861|ref|YP_002465293.1| - 1.5e-34 119.1 0.0 2.5e-34 118.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|219850861|ref|YP_002465293.1| - 5.6e-29 99.6 12.8 1.6e-14 53.3 3.0 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|219850861|ref|YP_002465293.1| - 1.8e-25 89.5 0.0 4.7e-25 88.2 0.0 1.7 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|219850861|ref|YP_002465293.1| - 1.8e-17 63.5 0.0 3.2e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|219850861|ref|YP_002465293.1| - 1.9e-10 40.9 0.0 1.9e-06 27.8 0.0 2.4 2 0 0 2 2 2 2 Glycoprotease family DZR PF12773.7 gi|219850861|ref|YP_002465293.1| - 0.00057 19.9 4.0 0.32 11.1 0.1 2.4 2 0 0 2 2 2 2 Double zinc ribbon Carbam_trans_N PF02543.15 gi|219850861|ref|YP_002465293.1| - 0.011 15.5 0.0 0.034 13.8 0.0 1.7 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus PhnA_Zn_Ribbon PF08274.12 gi|219850861|ref|YP_002465293.1| - 0.37 10.8 4.5 0.96 9.5 0.6 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|219850861|ref|YP_002465293.1| - 0.8 9.9 7.0 0.38 10.9 1.3 3.0 3 0 0 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|219850861|ref|YP_002465293.1| - 0.84 9.7 2.1 3.8 7.6 0.3 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE PF01363.21 gi|219850861|ref|YP_002465293.1| - 1.5 9.0 3.5 1.6 8.9 0.1 2.4 2 1 0 2 2 2 0 FYVE zinc finger zinc_ribbon_4 PF13717.6 gi|219850861|ref|YP_002465293.1| - 8.6 6.4 5.8 48 4.0 2.6 2.6 2 0 0 2 2 2 0 zinc-ribbon domain ArsR PF09824.9 gi|219850862|ref|YP_002465294.1| - 1.2e-65 220.0 0.0 1.3e-65 219.8 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator FeoC PF09012.10 gi|219850862|ref|YP_002465294.1| - 0.012 15.6 0.0 0.045 13.8 0.0 2.0 1 1 1 2 2 2 0 FeoC like transcriptional regulator HTH_DeoR PF08220.12 gi|219850862|ref|YP_002465294.1| - 0.012 15.3 0.1 0.043 13.6 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|219850862|ref|YP_002465294.1| - 0.018 15.0 0.2 0.2 11.6 0.0 2.4 2 0 0 2 2 2 0 HTH domain MRP-L20 PF12824.7 gi|219850862|ref|YP_002465294.1| - 0.16 12.2 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 HTH_24 PF13412.6 gi|219850863|ref|YP_002465295.1| - 2.6e-09 36.5 0.0 6.9e-09 35.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|219850863|ref|YP_002465295.1| - 2.2e-08 33.9 0.1 5.5e-08 32.6 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|219850863|ref|YP_002465295.1| - 4.6e-08 32.9 0.0 3.7e-06 26.8 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|219850863|ref|YP_002465295.1| - 7.1e-06 25.9 0.2 3.6e-05 23.6 0.1 2.3 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|219850863|ref|YP_002465295.1| - 9.1e-05 22.1 0.0 0.0002 21.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|219850863|ref|YP_002465295.1| - 0.00016 21.5 0.0 0.00039 20.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|219850863|ref|YP_002465295.1| - 0.00026 21.1 0.1 0.0012 19.0 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|219850863|ref|YP_002465295.1| - 0.00033 20.4 0.1 0.001 18.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|219850863|ref|YP_002465295.1| - 0.0015 18.3 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|219850863|ref|YP_002465295.1| - 0.0018 18.2 0.2 0.021 14.7 0.2 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|219850863|ref|YP_002465295.1| - 0.0057 16.3 0.1 0.028 14.0 0.1 2.2 1 1 1 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_13 PF11972.8 gi|219850863|ref|YP_002465295.1| - 0.006 16.6 0.1 0.014 15.4 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|219850863|ref|YP_002465295.1| - 0.01 16.2 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_3 PF01381.22 gi|219850863|ref|YP_002465295.1| - 0.011 15.8 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Mnd1 PF03962.15 gi|219850863|ref|YP_002465295.1| - 0.013 15.8 0.0 0.032 14.5 0.0 1.6 1 0 0 1 1 1 0 Mnd1 HTH domain DUF4423 PF14394.6 gi|219850863|ref|YP_002465295.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|219850863|ref|YP_002465295.1| - 0.013 15.4 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.12 gi|219850863|ref|YP_002465295.1| - 0.014 15.1 0.0 0.037 13.8 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.6 gi|219850863|ref|YP_002465295.1| - 0.021 15.3 0.1 0.19 12.2 0.0 2.5 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|219850863|ref|YP_002465295.1| - 0.023 14.8 1.2 0.043 13.9 0.0 2.1 3 0 0 3 3 1 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|219850863|ref|YP_002465295.1| - 0.024 14.8 0.0 0.067 13.4 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin EAP30 PF04157.16 gi|219850863|ref|YP_002465295.1| - 0.035 13.4 0.1 0.12 11.6 0.0 1.9 3 0 0 3 3 3 0 EAP30/Vps36 family HTH_17 PF12728.7 gi|219850863|ref|YP_002465295.1| - 0.049 13.8 0.0 10 6.4 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|219850863|ref|YP_002465295.1| - 0.066 13.3 0.2 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|219850863|ref|YP_002465295.1| - 0.069 13.1 0.1 0.3 11.1 0.0 2.2 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|219850863|ref|YP_002465295.1| - 0.089 12.8 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix YdaS_antitoxin PF15943.5 gi|219850863|ref|YP_002465295.1| - 0.11 12.3 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT PCI PF01399.27 gi|219850863|ref|YP_002465295.1| - 0.18 12.3 1.9 1.9 9.0 0.1 2.8 3 0 0 3 3 3 0 PCI domain DEAD PF00270.29 gi|219850864|ref|YP_002465296.1| - 1e-19 71.0 0.0 2.7e-19 69.6 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|219850864|ref|YP_002465296.1| - 4.7e-15 55.9 0.0 1.2e-14 54.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|219850864|ref|YP_002465296.1| - 4.7e-06 26.7 0.0 9.4e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3042 PF11240.8 gi|219850864|ref|YP_002465296.1| - 0.17 11.9 0.1 0.43 10.6 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3042) Aconitase PF00330.20 gi|219850865|ref|YP_002465297.1| - 1.1e-91 308.2 4.2 1.1e-89 301.6 4.2 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|219850866|ref|YP_002465298.1| - 5.9e-21 75.2 0.0 7.9e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|219850866|ref|YP_002465298.1| - 0.08 12.6 0.1 0.49 10.0 0.0 1.9 1 1 1 2 2 2 0 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|219850867|ref|YP_002465299.1| - 3.9e-91 305.8 0.0 4.5e-91 305.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2623 PF11115.8 gi|219850867|ref|YP_002465299.1| - 0.098 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2623) TetR_N PF00440.23 gi|219850869|ref|YP_002465301.1| - 2.2e-17 62.5 0.0 4.6e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|219850869|ref|YP_002465301.1| - 0.0016 18.5 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_6 PF13977.6 gi|219850869|ref|YP_002465301.1| - 0.0035 17.6 0.0 0.0049 17.1 0.0 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal HTH_23 PF13384.6 gi|219850869|ref|YP_002465301.1| - 0.0087 15.8 0.0 0.023 14.5 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_22 PF13309.6 gi|219850869|ref|YP_002465301.1| - 0.01 15.9 0.1 0.022 14.8 0.1 1.6 1 0 0 1 1 1 0 HTH domain TetR_C_21 PF17926.1 gi|219850869|ref|YP_002465301.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_7 PF02796.15 gi|219850869|ref|YP_002465301.1| - 0.029 14.4 0.0 0.06 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|219850869|ref|YP_002465301.1| - 0.036 14.0 0.0 4.6 7.3 0.0 2.6 3 0 0 3 3 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|219850869|ref|YP_002465301.1| - 0.042 13.4 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|219850869|ref|YP_002465301.1| - 0.054 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_36 PF13730.6 gi|219850869|ref|YP_002465301.1| - 0.073 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4315 PF14193.6 gi|219850869|ref|YP_002465301.1| - 0.08 13.0 0.5 0.17 11.9 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) MarR_2 PF12802.7 gi|219850869|ref|YP_002465301.1| - 0.089 12.7 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_17 PF12728.7 gi|219850869|ref|YP_002465301.1| - 0.098 12.9 0.1 0.36 11.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|219850869|ref|YP_002465301.1| - 0.14 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain MerR PF00376.23 gi|219850869|ref|YP_002465301.1| - 0.15 11.8 0.1 8 6.3 0.0 2.3 2 0 0 2 2 2 0 MerR family regulatory protein HTH_IclR PF09339.10 gi|219850869|ref|YP_002465301.1| - 0.19 11.6 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Amidohydro_3 PF07969.11 gi|219850870|ref|YP_002465302.1| - 1.4e-87 295.1 0.0 1.6e-87 294.9 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|219850870|ref|YP_002465302.1| - 1.6e-09 37.5 0.0 0.00064 19.1 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family ICMT PF04140.14 gi|219850871|ref|YP_002465303.1| - 5.2e-15 55.6 3.8 7.5e-15 55.1 0.5 2.2 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 gi|219850871|ref|YP_002465303.1| - 1.9e-11 44.3 0.5 1.9e-11 44.3 0.5 2.2 2 0 0 2 2 2 1 Phospholipid methyltransferase Steroid_dh PF02544.16 gi|219850871|ref|YP_002465303.1| - 3.5e-05 23.8 0.8 0.0018 18.3 0.2 2.1 1 1 1 2 2 2 1 3-oxo-5-alpha-steroid 4-dehydrogenase EI24 PF07264.11 gi|219850871|ref|YP_002465303.1| - 0.00048 20.4 17.2 0.016 15.5 6.7 2.0 2 0 0 2 2 2 2 Etoposide-induced protein 2.4 (EI24) DUF1295 PF06966.12 gi|219850871|ref|YP_002465303.1| - 0.00071 19.2 3.8 0.051 13.1 0.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1295) ERG4_ERG24 PF01222.17 gi|219850871|ref|YP_002465303.1| - 0.0008 18.3 0.0 0.0017 17.2 0.0 1.5 1 1 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family DUF2207 PF09972.9 gi|219850871|ref|YP_002465303.1| - 0.022 13.5 12.6 0.053 12.3 1.8 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DHHC PF01529.20 gi|219850871|ref|YP_002465303.1| - 0.084 13.0 3.2 6.5 6.9 3.9 2.3 1 1 1 2 2 2 0 DHHC palmitoyltransferase PRA1 PF03208.19 gi|219850871|ref|YP_002465303.1| - 0.21 11.2 8.2 1.6 8.3 1.3 2.2 1 1 1 2 2 2 0 PRA1 family protein PBP PF01161.20 gi|219850872|ref|YP_002465304.1| - 1.3e-33 116.1 0.0 1.7e-33 115.7 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein FrhB_FdhB_C PF04432.13 gi|219850873|ref|YP_002465305.1| - 3.4e-35 121.2 0.4 3.4e-35 121.2 0.4 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|219850873|ref|YP_002465305.1| - 2.9e-19 69.0 0.0 5.7e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|219850873|ref|YP_002465305.1| - 1.1e-06 28.7 13.8 0.0009 19.3 0.0 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219850873|ref|YP_002465305.1| - 1.2e-06 28.1 19.1 0.0003 20.5 4.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219850873|ref|YP_002465305.1| - 4.2e-05 24.0 19.3 5.6e-05 23.6 16.2 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219850873|ref|YP_002465305.1| - 0.00041 20.5 20.7 0.006 16.7 17.6 3.6 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219850873|ref|YP_002465305.1| - 0.00056 20.2 2.2 0.00056 20.2 2.2 3.8 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219850873|ref|YP_002465305.1| - 0.001 19.1 3.3 0.001 19.1 3.3 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219850873|ref|YP_002465305.1| - 0.0014 19.1 19.2 0.018 15.5 17.8 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219850873|ref|YP_002465305.1| - 0.0024 18.4 20.2 0.015 15.9 18.5 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219850873|ref|YP_002465305.1| - 0.019 15.0 2.1 0.019 15.0 2.1 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219850873|ref|YP_002465305.1| - 0.021 15.0 11.3 0.63 10.3 0.4 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219850873|ref|YP_002465305.1| - 0.21 12.4 20.9 0.42 11.5 0.6 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219850873|ref|YP_002465305.1| - 2.6 8.3 25.0 4 7.7 21.3 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219850873|ref|YP_002465305.1| - 3.8 8.5 23.3 0.31 12.0 0.9 3.6 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 gi|219850874|ref|YP_002465306.1| - 1.7e-95 320.5 0.0 2.4e-95 320.0 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|219850874|ref|YP_002465306.1| - 9.2e-31 106.2 0.0 1.7e-30 105.3 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|219850874|ref|YP_002465306.1| - 2.7e-22 78.5 3.3 5.3e-22 77.6 3.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain PEX-2N PF09263.10 gi|219850874|ref|YP_002465306.1| - 0.14 12.5 0.0 10 6.5 0.0 3.0 3 0 0 3 3 3 0 Peroxisome biogenesis factor 1, N-terminal FmdE PF02663.14 gi|219850875|ref|YP_002465307.1| - 2.3e-27 95.6 0.0 3.3e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ADD_DNMT3 PF17980.1 gi|219850875|ref|YP_002465307.1| - 0.0038 17.2 0.1 0.0081 16.1 0.1 1.6 1 0 0 1 1 1 1 Cysteine rich ADD domain in DNMT3 DUF4900 PF16241.5 gi|219850875|ref|YP_002465307.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4900) zf-dskA_traR PF01258.17 gi|219850875|ref|YP_002465307.1| - 0.11 12.4 3.3 2.8 8.0 0.1 2.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF3494 PF11999.8 gi|219850876|ref|YP_002465308.1| - 2.2e-70 236.5 17.8 2.2e-70 236.5 17.8 4.1 3 1 0 3 3 3 1 Protein of unknown function (DUF3494) NosD PF05048.13 gi|219850876|ref|YP_002465308.1| - 1.2e-32 113.1 35.4 2.7e-32 112.0 34.6 1.8 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219850876|ref|YP_002465308.1| - 9.5e-16 58.0 21.3 9.5e-16 58.0 21.3 3.8 2 1 2 4 4 4 2 Right handed beta helix region MobB PF03205.14 gi|219850877|ref|YP_002465309.1| - 7.6e-18 64.7 0.1 1e-17 64.3 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|219850877|ref|YP_002465309.1| - 0.02 15.4 0.0 0.026 15.0 0.0 1.3 1 0 0 1 1 1 0 ABC transporter PduV-EutP PF10662.9 gi|219850877|ref|YP_002465309.1| - 0.072 12.8 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|219850877|ref|YP_002465309.1| - 0.078 13.1 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase CbiA PF01656.23 gi|219850877|ref|YP_002465309.1| - 0.11 12.6 0.1 0.25 11.4 0.1 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PRK PF00485.18 gi|219850877|ref|YP_002465309.1| - 0.12 12.1 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|219850877|ref|YP_002465309.1| - 0.13 12.6 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Nitroreductase PF00881.24 gi|219850878|ref|YP_002465310.1| - 3.7e-26 92.2 0.0 4.5e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family GXGXG PF01493.19 gi|219850879|ref|YP_002465311.1| - 1.7e-05 24.5 22.1 9.3e-05 22.1 21.4 2.2 1 1 0 1 1 1 1 GXGXG motif HasA PF06438.12 gi|219850879|ref|YP_002465311.1| - 0.028 14.1 0.3 0.06 13.0 0.3 1.5 1 0 0 1 1 1 0 Heme-binding protein A (HasA) Amidohydro_3 PF07969.11 gi|219850880|ref|YP_002465312.1| - 1.7e-70 238.8 0.0 2.1e-70 238.5 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|219850880|ref|YP_002465312.1| - 0.00028 20.3 0.1 0.0064 15.9 0.1 2.5 1 1 0 1 1 1 1 Amidohydrolase family Molybdopterin PF00384.22 gi|219850881|ref|YP_002465313.1| - 3.5e-12 46.0 0.0 3.7e-10 39.3 0.0 2.3 2 1 0 2 2 2 2 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|219850881|ref|YP_002465313.1| - 0.12 12.1 0.1 14 5.4 0.0 3.3 4 0 0 4 4 4 0 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.21 gi|219850882|ref|YP_002465314.1| - 2.8e-10 40.2 0.1 3.6e-10 39.8 0.1 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HlyD_D23 PF16576.5 gi|219850882|ref|YP_002465314.1| - 0.027 13.7 0.1 0.041 13.1 0.1 1.3 1 1 0 1 1 1 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion MoeA_N PF03453.17 gi|219850883|ref|YP_002465315.1| - 2.3e-34 118.4 0.1 3.9e-34 117.7 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|219850883|ref|YP_002465315.1| - 2.9e-25 88.6 0.1 5.3e-25 87.8 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|219850883|ref|YP_002465315.1| - 3.5e-21 75.2 0.0 8.4e-19 67.4 0.0 2.2 2 0 0 2 2 2 2 PBP superfamily domain MoeA_C PF03454.15 gi|219850883|ref|YP_002465315.1| - 1.3e-05 25.2 0.1 2.7e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NIR_SIR PF01077.22 gi|219850884|ref|YP_002465316.1| - 2.5e-20 72.6 0.0 3.3e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|219850884|ref|YP_002465316.1| - 2.3e-18 65.8 0.0 3.9e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|219850884|ref|YP_002465316.1| - 5.1e-10 38.7 23.0 2.3e-06 27.2 1.8 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219850884|ref|YP_002465316.1| - 1.1e-08 35.1 9.6 0.00015 21.9 3.8 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219850884|ref|YP_002465316.1| - 3.4e-07 30.7 13.3 6.1e-07 29.9 10.0 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219850884|ref|YP_002465316.1| - 1.3e-06 29.1 9.3 0.007 17.1 0.1 3.9 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|219850884|ref|YP_002465316.1| - 3.6e-06 27.0 8.8 3.6e-06 27.0 8.8 2.2 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219850884|ref|YP_002465316.1| - 4.9e-06 26.6 21.5 0.00044 20.3 12.5 3.3 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219850884|ref|YP_002465316.1| - 0.00016 21.6 10.2 0.0018 18.3 1.4 4.4 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219850884|ref|YP_002465316.1| - 0.00042 20.2 1.4 0.00042 20.2 1.4 4.6 5 1 0 5 5 5 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219850884|ref|YP_002465316.1| - 0.0047 17.4 11.9 0.14 12.7 0.7 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219850884|ref|YP_002465316.1| - 0.015 15.7 13.3 0.042 14.3 0.1 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219850884|ref|YP_002465316.1| - 0.036 15.0 17.5 0.43 11.6 1.9 3.6 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219850884|ref|YP_002465316.1| - 0.088 13.4 2.1 0.088 13.4 2.1 3.8 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|219850884|ref|YP_002465316.1| - 0.16 12.5 11.8 2 9.0 1.1 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|219850884|ref|YP_002465316.1| - 2.7 8.9 13.7 2.7 8.9 2.7 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain DUF772 PF05598.11 gi|219850885|ref|YP_002465317.1| - 0.0025 17.8 0.1 0.0035 17.3 0.1 1.2 1 0 0 1 1 1 1 Transposase domain (DUF772) TOBE PF03459.17 gi|219850886|ref|YP_002465318.1| - 2.8e-15 56.4 0.1 3.2e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 TOBE domain SBP_bac_11 PF13531.6 gi|219850887|ref|YP_002465319.1| - 2.8e-41 141.7 1.4 2.8e-41 141.7 1.4 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|219850887|ref|YP_002465319.1| - 5.3e-12 46.3 2.6 2.4e-11 44.2 2.5 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Ribosomal_S8 PF00410.19 gi|219850887|ref|YP_002465319.1| - 0.0021 18.0 0.0 0.16 11.9 0.0 2.6 1 1 1 2 2 2 1 Ribosomal protein S8 BPD_transp_1 PF00528.22 gi|219850888|ref|YP_002465320.1| - 1.4e-13 51.0 16.1 1.4e-13 51.0 16.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|219850889|ref|YP_002465321.1| - 3.7e-33 114.9 0.0 5.3e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|219850889|ref|YP_002465321.1| - 4.7e-11 42.5 0.0 2.5e-10 40.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|219850889|ref|YP_002465321.1| - 5.5e-08 33.0 0.5 0.0071 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|219850889|ref|YP_002465321.1| - 7.1e-05 23.4 0.1 9e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219850889|ref|YP_002465321.1| - 0.00054 19.7 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|219850889|ref|YP_002465321.1| - 0.0031 17.3 0.0 0.0039 16.9 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|219850889|ref|YP_002465321.1| - 0.022 15.2 0.0 0.21 12.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|219850889|ref|YP_002465321.1| - 0.034 14.5 0.0 0.064 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|219850889|ref|YP_002465321.1| - 0.036 13.9 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal SbcCD_C PF13558.6 gi|219850889|ref|YP_002465321.1| - 0.039 14.2 0.1 0.68 10.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|219850889|ref|YP_002465321.1| - 0.094 12.6 0.1 0.61 10.0 0.0 2.0 2 1 0 2 2 2 0 NTPase AAA_13 PF13166.6 gi|219850889|ref|YP_002465321.1| - 0.17 10.5 0.1 1 7.9 0.1 1.8 1 1 0 2 2 2 0 AAA domain AhpC-TSA PF00578.21 gi|219850890|ref|YP_002465322.1| - 9.2e-26 90.2 0.0 1.1e-25 89.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|219850890|ref|YP_002465322.1| - 2.9e-16 59.5 0.0 3.3e-16 59.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin Trp_syntA PF00290.20 gi|219850891|ref|YP_002465323.1| - 8.2e-88 293.6 0.0 9.6e-88 293.4 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|219850891|ref|YP_002465323.1| - 1.4e-05 24.6 0.1 5.4e-05 22.8 0.1 1.9 1 1 0 2 2 2 1 Histidine biosynthesis protein Pterin_bind PF00809.22 gi|219850891|ref|YP_002465323.1| - 0.00052 19.8 0.0 0.0017 18.1 0.0 1.9 1 1 0 1 1 1 1 Pterin binding enzyme ThiG PF05690.14 gi|219850891|ref|YP_002465323.1| - 0.0047 16.3 0.1 0.012 14.9 0.0 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PALP PF00291.25 gi|219850892|ref|YP_002465324.1| - 2.7e-45 155.1 0.9 3.4e-45 154.7 0.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|219850893|ref|YP_002465325.1| - 4.3e-63 212.9 0.0 5.1e-63 212.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase ThiG PF05690.14 gi|219850893|ref|YP_002465325.1| - 0.061 12.6 0.3 0.38 10.0 0.0 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG QRPTase_C PF01729.19 gi|219850893|ref|YP_002465325.1| - 0.071 12.9 0.0 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glycos_transf_3 PF00591.21 gi|219850894|ref|YP_002465326.1| - 4.2e-90 301.7 3.8 6.2e-90 301.2 3.8 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|219850894|ref|YP_002465326.1| - 9.6e-18 63.8 5.8 1.1e-17 63.6 3.9 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase PF00117.28 gi|219850895|ref|YP_002465327.1| - 9.3e-50 169.0 0.0 1.1e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|219850895|ref|YP_002465327.1| - 4.1e-06 26.7 0.1 3.1e-05 23.9 0.0 2.2 1 1 1 2 2 2 1 Peptidase C26 Chorismate_bind PF00425.18 gi|219850896|ref|YP_002465328.1| - 8.3e-98 327.0 0.0 1.2e-97 326.5 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|219850896|ref|YP_002465328.1| - 6.9e-17 62.0 0.0 1.4e-13 51.3 0.0 2.4 2 0 0 2 2 2 2 Anthranilate synthase component I, N terminal region PAS PF00989.25 gi|219850897|ref|YP_002465329.1| - 4.5e-27 94.3 0.0 2.6e-10 40.3 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|219850897|ref|YP_002465329.1| - 3.2e-26 91.8 0.7 2.6e-08 34.1 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|219850897|ref|YP_002465329.1| - 1.8e-23 82.8 0.0 7.5e-07 29.4 0.0 3.3 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|219850897|ref|YP_002465329.1| - 8.8e-19 67.1 2.4 3.9e-06 26.7 0.1 4.1 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 gi|219850897|ref|YP_002465329.1| - 1e-09 38.5 0.0 7.9e-07 29.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 gi|219850897|ref|YP_002465329.1| - 6.1e-08 32.8 1.4 0.25 11.5 0.0 4.7 4 2 0 4 4 4 2 PAS fold HTH_23 PF13384.6 gi|219850897|ref|YP_002465329.1| - 5.5e-06 26.0 0.1 2.9e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|219850897|ref|YP_002465329.1| - 0.00068 19.4 0.3 0.0082 15.9 0.0 2.8 4 0 0 4 4 4 1 IclR helix-turn-helix domain KorB PF08535.10 gi|219850897|ref|YP_002465329.1| - 0.0013 18.7 0.0 0.014 15.4 0.0 2.3 2 0 0 2 2 2 1 KorB domain HTH_38 PF13936.6 gi|219850897|ref|YP_002465329.1| - 0.0017 18.0 0.6 0.0059 16.4 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|219850897|ref|YP_002465329.1| - 0.0042 16.9 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|219850897|ref|YP_002465329.1| - 0.0074 16.2 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|219850897|ref|YP_002465329.1| - 0.011 15.1 0.0 0.031 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|219850897|ref|YP_002465329.1| - 0.022 14.3 0.1 0.074 12.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family TBPIP PF07106.13 gi|219850897|ref|YP_002465329.1| - 0.089 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_20 PF12840.7 gi|219850897|ref|YP_002465329.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.11 gi|219850897|ref|YP_002465329.1| - 0.14 12.0 0.3 0.71 9.8 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) CARDB PF07705.11 gi|219850898|ref|YP_002465330.1| - 1.2e-07 31.9 10.4 0.031 14.5 1.1 3.4 3 0 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|219850898|ref|YP_002465330.1| - 3.5e-07 30.4 7.5 0.052 13.8 0.0 4.4 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase PHTB1_C PF14728.6 gi|219850898|ref|YP_002465330.1| - 0.019 14.0 0.4 2 7.4 0.0 2.9 3 0 0 3 3 3 0 PTHB1 C-terminus ASH PF15780.5 gi|219850898|ref|YP_002465330.1| - 0.034 14.4 0.2 7 6.9 0.0 2.9 3 0 0 3 3 3 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Peptidase_M73 PF12389.8 gi|219850898|ref|YP_002465330.1| - 0.1 12.4 0.8 0.37 10.6 0.0 2.3 3 1 0 3 3 3 0 Camelysin metallo-endopeptidase MMPL PF03176.15 gi|219850899|ref|YP_002465331.1| - 9.3e-46 156.3 23.5 2.9e-28 98.8 8.1 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|219850899|ref|YP_002465331.1| - 8.5e-14 51.7 12.3 5.5e-08 32.8 4.0 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|219850899|ref|YP_002465331.1| - 1.1e-11 44.4 22.4 6.9e-10 38.6 6.7 2.6 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 gi|219850899|ref|YP_002465331.1| - 9.2e-07 27.3 20.3 0.0011 17.1 4.8 2.3 2 0 0 2 2 2 2 Patched family DUF2207 PF09972.9 gi|219850899|ref|YP_002465331.1| - 0.017 13.9 0.2 0.017 13.9 0.2 3.5 2 2 0 3 3 3 0 Predicted membrane protein (DUF2207) Treslin_N PF15292.6 gi|219850899|ref|YP_002465331.1| - 0.084 11.2 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Treslin N-terminus Ribosomal_S15 PF00312.22 gi|219850900|ref|YP_002465332.1| - 0.016 15.4 0.2 0.024 14.8 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S15 ZapB PF06005.12 gi|219850900|ref|YP_002465332.1| - 0.074 13.5 0.3 0.097 13.1 0.3 1.2 1 0 0 1 1 1 0 Cell division protein ZapB CoA_transf_3 PF02515.17 gi|219850901|ref|YP_002465333.1| - 0.067 12.3 1.1 0.092 11.8 1.1 1.2 1 0 0 1 1 1 0 CoA-transferase family III E1-E2_ATPase PF00122.20 gi|219850902|ref|YP_002465334.1| - 7.7e-46 155.9 0.0 7.7e-46 155.9 0.0 3.8 3 1 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_N PF00690.26 gi|219850902|ref|YP_002465334.1| - 3.6e-20 71.4 0.1 1.4e-19 69.5 0.1 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase_C PF00689.21 gi|219850902|ref|YP_002465334.1| - 4.3e-16 59.2 14.3 4.3e-16 59.2 14.3 2.6 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|219850902|ref|YP_002465334.1| - 2.4e-14 54.1 0.4 8e-14 52.4 0.4 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|219850902|ref|YP_002465334.1| - 1.6e-07 31.3 0.0 2.9e-05 24.1 0.0 3.0 3 0 0 3 3 3 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|219850902|ref|YP_002465334.1| - 0.00022 21.0 0.2 0.00062 19.6 0.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|219850902|ref|YP_002465334.1| - 0.18 12.2 0.0 0.37 11.2 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Nitroreductase PF00881.24 gi|219850903|ref|YP_002465335.1| - 4e-24 85.6 0.1 4.9e-24 85.3 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family Putative_PNPOx PF01243.20 gi|219850904|ref|YP_002465336.1| - 2e-11 43.9 0.0 3e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|219850904|ref|YP_002465336.1| - 1.1e-07 31.9 0.0 1.5e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|219850904|ref|YP_002465336.1| - 1.3e-06 28.0 0.0 1.5e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like FMN_bind_2 PF04299.12 gi|219850904|ref|YP_002465336.1| - 0.062 13.0 0.0 0.081 12.6 0.0 1.1 1 0 0 1 1 1 0 Putative FMN-binding domain Glyoxalase_2 PF12681.7 gi|219850904|ref|YP_002465336.1| - 0.11 12.4 0.0 0.72 9.8 0.0 2.0 1 1 1 2 2 2 0 Glyoxalase-like domain MarR_2 PF12802.7 gi|219850905|ref|YP_002465337.1| - 4.4e-11 42.5 0.0 9.7e-11 41.4 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|219850905|ref|YP_002465337.1| - 1.8e-09 37.4 0.0 3.6e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|219850905|ref|YP_002465337.1| - 2.2e-06 27.1 0.0 1.3e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|219850905|ref|YP_002465337.1| - 2.4e-06 27.6 0.0 4.5e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|219850905|ref|YP_002465337.1| - 2.5e-06 27.9 0.1 6.1e-06 26.6 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|219850905|ref|YP_002465337.1| - 4.7e-06 26.4 0.0 3.2e-05 23.7 0.0 2.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|219850905|ref|YP_002465337.1| - 0.0003 20.5 0.0 0.00064 19.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|219850905|ref|YP_002465337.1| - 0.00031 20.5 0.0 0.00052 19.8 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.19 gi|219850905|ref|YP_002465337.1| - 0.0024 18.0 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|219850905|ref|YP_002465337.1| - 0.014 15.3 0.0 0.065 13.2 0.0 1.9 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain MFS_1 PF07690.16 gi|219850907|ref|YP_002465339.1| - 2e-46 158.5 74.4 4.5e-44 150.8 39.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Methyltransf_25 PF13649.6 gi|219850908|ref|YP_002465340.1| - 9.9e-11 42.2 0.0 1.8e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|219850908|ref|YP_002465340.1| - 9.3e-10 38.2 0.0 1.3e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|219850908|ref|YP_002465340.1| - 2.2e-09 37.3 0.0 2.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219850908|ref|YP_002465340.1| - 5.1e-08 32.9 0.0 6.6e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|219850908|ref|YP_002465340.1| - 1.3e-07 32.1 0.0 2.3e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219850908|ref|YP_002465340.1| - 2.1e-07 30.9 0.0 3.8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219850908|ref|YP_002465340.1| - 6.2e-07 30.1 0.0 9.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|219850908|ref|YP_002465340.1| - 2.5e-05 24.0 0.1 4.4e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|219850908|ref|YP_002465340.1| - 0.0019 17.3 0.0 0.0026 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|219850908|ref|YP_002465340.1| - 0.002 17.7 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|219850908|ref|YP_002465340.1| - 0.018 16.1 0.0 0.031 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|219850908|ref|YP_002465340.1| - 0.032 13.6 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|219850908|ref|YP_002465340.1| - 0.059 13.3 0.0 0.089 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|219850908|ref|YP_002465340.1| - 0.095 12.2 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.16 gi|219850908|ref|YP_002465340.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein DUF2196 PF09962.9 gi|219850909|ref|YP_002465341.1| - 9.2e-30 102.4 4.3 1.1e-29 102.2 4.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) ATP-grasp_6 PF18419.1 gi|219850909|ref|YP_002465341.1| - 0.07 12.8 0.1 0.34 10.6 0.0 1.9 2 1 0 2 2 2 0 ATP-grasp-like domain Oxidored_nitro PF00148.19 gi|219850910|ref|YP_002465342.1| - 9.9e-36 123.3 0.0 1.4e-20 73.4 0.1 2.0 2 0 0 2 2 2 2 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|219850911|ref|YP_002465343.1| - 5.3e-52 176.9 0.0 6.6e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|219850912|ref|YP_002465344.1| - 4.4e-111 370.7 0.1 5.5e-111 370.3 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|219850912|ref|YP_002465344.1| - 1.5e-13 51.0 0.0 2.3e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|219850912|ref|YP_002465344.1| - 5.7e-09 36.1 0.1 1.1e-08 35.2 0.1 1.5 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|219850912|ref|YP_002465344.1| - 2.4e-07 30.2 0.4 4.8e-07 29.2 0.1 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|219850912|ref|YP_002465344.1| - 6.6e-07 29.1 0.5 0.014 14.9 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|219850912|ref|YP_002465344.1| - 1e-06 28.4 0.1 4.5e-05 23.0 0.1 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 gi|219850912|ref|YP_002465344.1| - 0.00085 19.7 0.1 0.011 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain MipZ PF09140.11 gi|219850912|ref|YP_002465344.1| - 0.0018 17.6 0.4 0.0065 15.8 0.1 1.9 2 1 0 2 2 2 1 ATPase MipZ dCache_3 PF14827.6 gi|219850912|ref|YP_002465344.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase AAA_24 PF13479.6 gi|219850912|ref|YP_002465344.1| - 0.021 14.5 0.1 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|219850912|ref|YP_002465344.1| - 0.025 14.1 0.1 0.059 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|219850912|ref|YP_002465344.1| - 0.036 13.7 0.4 0.077 12.6 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|219850912|ref|YP_002465344.1| - 0.055 12.5 0.4 0.13 11.3 0.4 1.7 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|219850912|ref|YP_002465344.1| - 0.087 13.2 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 RNA helicase Cupin_2 PF07883.11 gi|219850913|ref|YP_002465345.1| - 2.1e-11 43.3 0.0 2.9e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|219850913|ref|YP_002465345.1| - 8.6e-07 28.9 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|219850913|ref|YP_002465345.1| - 4e-05 23.2 0.0 5.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|219850913|ref|YP_002465345.1| - 9.6e-05 22.2 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.7 gi|219850913|ref|YP_002465345.1| - 0.00024 20.9 0.0 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_N PF06719.13 gi|219850913|ref|YP_002465345.1| - 0.0022 17.7 0.0 0.0028 17.3 0.0 1.1 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus AraC_binding_2 PF14525.6 gi|219850913|ref|YP_002465345.1| - 0.0077 15.9 0.0 0.0077 15.9 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain MannoseP_isomer PF01050.18 gi|219850913|ref|YP_002465345.1| - 0.045 13.7 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Ectoine_synth PF06339.12 gi|219850913|ref|YP_002465345.1| - 0.078 13.2 0.0 0.09 13.0 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase CENP-C_C PF11699.8 gi|219850913|ref|YP_002465345.1| - 0.11 12.7 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Ppnp PF06865.11 gi|219850913|ref|YP_002465345.1| - 0.14 12.5 0.1 0.2 12.1 0.1 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Asp_Arg_Hydrox PF05118.15 gi|219850913|ref|YP_002465345.1| - 0.19 11.5 0.0 0.3 10.9 0.0 1.3 1 1 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase MIP PF00230.20 gi|219850914|ref|YP_002465346.1| - 1.7e-45 155.5 18.9 1.9e-45 155.3 18.9 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF2180 PF09947.9 gi|219850915|ref|YP_002465347.1| - 5.9e-35 119.1 5.7 6.3e-35 119.0 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|219850915|ref|YP_002465347.1| - 0.0022 18.7 4.3 0.013 16.3 1.5 2.1 2 0 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon FYVE PF01363.21 gi|219850915|ref|YP_002465347.1| - 0.015 15.4 1.3 0.019 15.1 1.3 1.2 1 0 0 1 1 1 0 FYVE zinc finger Transp_Tc5_C PF04236.15 gi|219850915|ref|YP_002465347.1| - 0.04 14.3 2.0 0.066 13.6 2.0 1.4 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain zf-AN1 PF01428.16 gi|219850915|ref|YP_002465347.1| - 0.082 13.1 2.5 0.48 10.6 0.6 2.3 2 1 0 2 2 2 0 AN1-like Zinc finger Prok-RING_1 PF14446.6 gi|219850915|ref|YP_002465347.1| - 0.18 11.7 8.6 1.3 9.0 4.2 2.4 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2193 PF09959.9 gi|219850916|ref|YP_002465348.1| - 2.6e-280 930.0 1.3 2.9e-280 929.9 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) Malic_M PF03949.15 gi|219850917|ref|YP_002465349.1| - 7.2e-30 104.1 0.2 4.9e-29 101.4 0.2 2.0 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|219850917|ref|YP_002465349.1| - 3e-28 98.8 0.2 5.8e-21 75.1 0.1 2.4 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain CPP1-like PF11833.8 gi|219850918|ref|YP_002465350.1| - 0.48 10.0 7.4 0.042 13.5 2.4 1.8 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Gram_pos_anchor PF00746.21 gi|219850918|ref|YP_002465350.1| - 0.93 9.5 0.0 0.93 9.5 0.0 4.3 5 0 0 5 5 5 0 LPXTG cell wall anchor motif DUF3188 PF11384.8 gi|219850918|ref|YP_002465350.1| - 5.9 6.7 14.5 0.4 10.4 2.6 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) UbiA PF01040.18 gi|219850919|ref|YP_002465351.1| - 0.0029 16.9 3.5 0.0034 16.7 3.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Trep_Strep PF09605.10 gi|219850919|ref|YP_002465351.1| - 0.013 15.5 1.2 0.019 14.9 1.2 1.3 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) SdpI PF13630.6 gi|219850919|ref|YP_002465351.1| - 0.017 15.3 5.3 0.3 11.2 2.5 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family KbaA PF14089.6 gi|219850919|ref|YP_002465351.1| - 0.02 14.8 0.9 0.048 13.5 0.1 1.8 2 0 0 2 2 2 0 KinB-signalling pathway activation in sporulation VPDSG-CTERM PF18205.1 gi|219850919|ref|YP_002465351.1| - 0.029 14.2 0.3 0.029 14.2 0.3 2.8 4 0 0 4 4 4 0 VPDSG-CTERM motif DUF308 PF03729.13 gi|219850919|ref|YP_002465351.1| - 3.2 8.2 15.5 2.9 8.3 12.2 2.3 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) SdpI PF13630.6 gi|219850920|ref|YP_002465352.1| - 4.2 7.6 8.8 1.4 9.1 1.2 2.4 2 0 0 2 2 2 0 SdpI/YhfL protein family HTH_3 PF01381.22 gi|219850921|ref|YP_002465353.1| - 4.8e-12 45.7 0.0 5.4e-12 45.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|219850921|ref|YP_002465353.1| - 5.7e-09 36.2 0.0 6.8e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|219850921|ref|YP_002465353.1| - 6.2e-07 29.4 0.0 6.5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|219850921|ref|YP_002465353.1| - 0.00046 20.6 0.0 0.00052 20.4 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|219850921|ref|YP_002465353.1| - 0.00059 19.6 0.1 0.00072 19.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|219850921|ref|YP_002465353.1| - 0.0062 16.5 0.0 0.0088 16.0 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Pou PF00157.17 gi|219850921|ref|YP_002465353.1| - 0.084 12.9 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain GAF_2 PF13185.6 gi|219850922|ref|YP_002465354.1| - 0.0046 17.3 0.0 0.0051 17.1 0.0 1.0 1 0 0 1 1 1 1 GAF domain CMD PF02627.20 gi|219850923|ref|YP_002465355.1| - 1.4e-15 57.1 0.1 1.9e-15 56.7 0.1 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.12 gi|219850924|ref|YP_002465356.1| - 1.3e-122 408.1 1.2 1.5e-122 407.9 1.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|219850925|ref|YP_002465357.1| - 2.6e-64 216.0 0.0 3.1e-64 215.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.20 gi|219850926|ref|YP_002465358.1| - 9.8e-59 199.0 4.0 1.4e-58 198.5 4.0 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|219850926|ref|YP_002465358.1| - 0.0041 17.5 0.1 0.048 14.1 0.1 2.5 1 1 0 1 1 1 1 Cell division protein FtsA FGGY_C PF02782.16 gi|219850926|ref|YP_002465358.1| - 0.0045 16.7 1.5 0.01 15.6 0.3 2.2 3 0 0 3 3 3 1 FGGY family of carbohydrate kinases, C-terminal domain Peptidase_M22 PF00814.25 gi|219850926|ref|YP_002465358.1| - 0.058 13.1 0.1 16 5.1 0.0 2.6 3 0 0 3 3 3 0 Glycoprotease family T6SS_VasE PF05936.12 gi|219850926|ref|YP_002465358.1| - 0.15 10.8 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DUF2112 PF09885.9 gi|219850927|ref|YP_002465359.1| - 3.7e-63 211.8 0.0 4.2e-63 211.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) zf-CHC2 PF01807.20 gi|219850927|ref|YP_002465359.1| - 0.21 11.4 0.0 0.35 10.7 0.0 1.3 1 0 0 1 1 1 0 CHC2 zinc finger DUF2102 PF09875.9 gi|219850928|ref|YP_002465360.1| - 9.9e-42 140.9 0.0 1.2e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) PASTA PF03793.19 gi|219850929|ref|YP_002465361.1| - 0.016 15.0 0.1 0.051 13.4 0.1 1.8 1 0 0 1 1 1 0 PASTA domain ABC_tran PF00005.27 gi|219850930|ref|YP_002465362.1| - 9.5e-52 175.2 0.0 4.7e-26 91.9 0.0 2.4 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|219850930|ref|YP_002465362.1| - 4.4e-07 30.0 0.9 0.035 13.9 0.0 3.3 2 1 1 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|219850930|ref|YP_002465362.1| - 5.4e-06 26.4 0.1 0.15 11.9 0.0 2.7 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 gi|219850930|ref|YP_002465362.1| - 3.3e-05 23.5 0.4 0.067 12.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219850930|ref|YP_002465362.1| - 5.1e-05 23.9 1.2 0.068 13.7 0.1 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|219850930|ref|YP_002465362.1| - 0.00021 20.8 2.7 0.066 12.6 0.0 3.7 3 1 0 4 4 4 1 RecF/RecN/SMC N terminal domain PhoH PF02562.16 gi|219850930|ref|YP_002465362.1| - 0.00021 20.8 0.1 0.45 9.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein MobB PF03205.14 gi|219850930|ref|YP_002465362.1| - 0.00082 19.3 0.2 1.5 8.7 0.0 2.7 3 0 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|219850930|ref|YP_002465362.1| - 0.00084 18.6 1.3 0.3 10.2 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain PRK PF00485.18 gi|219850930|ref|YP_002465362.1| - 0.0015 18.3 0.6 0.79 9.4 0.1 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|219850930|ref|YP_002465362.1| - 0.0017 18.4 0.1 2.8 8.1 0.0 3.4 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|219850930|ref|YP_002465362.1| - 0.002 17.9 2.0 1.3 8.7 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|219850930|ref|YP_002465362.1| - 0.0036 17.6 1.9 2 8.7 0.0 2.8 3 0 0 3 3 2 2 AAA domain ATP-synt_ab PF00006.25 gi|219850930|ref|YP_002465362.1| - 0.0038 16.9 0.0 2.8 7.5 0.0 2.4 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 gi|219850930|ref|YP_002465362.1| - 0.0043 17.4 0.1 2.3 8.6 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|219850930|ref|YP_002465362.1| - 0.0057 15.4 0.0 0.18 10.4 0.0 2.4 3 0 0 3 3 3 1 AAA domain PduV-EutP PF10662.9 gi|219850930|ref|YP_002465362.1| - 0.0083 15.9 0.0 2.5 7.8 0.0 2.8 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|219850930|ref|YP_002465362.1| - 0.015 15.3 0.1 3.1 7.8 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|219850930|ref|YP_002465362.1| - 0.032 14.0 0.4 7.8 6.2 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|219850930|ref|YP_002465362.1| - 0.035 13.8 0.1 2.5 7.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|219850930|ref|YP_002465362.1| - 0.064 13.3 3.1 6.7 6.7 0.3 3.1 3 0 0 3 3 3 0 Helicase HerA, central domain NACHT PF05729.12 gi|219850930|ref|YP_002465362.1| - 0.11 12.4 2.4 11 5.8 0.2 2.5 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.6 gi|219850930|ref|YP_002465362.1| - 0.19 12.3 3.5 1.2 9.7 0.1 3.3 2 2 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|219850930|ref|YP_002465362.1| - 0.22 11.7 1.7 3.3 7.9 0.2 2.6 2 0 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|219850930|ref|YP_002465362.1| - 0.26 11.4 0.7 0.54 10.4 0.7 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Hydrolase PF00702.26 gi|219850931|ref|YP_002465363.1| - 2e-22 80.5 0.0 4.2e-22 79.5 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|219850931|ref|YP_002465363.1| - 1.8e-05 24.9 0.1 0.00012 22.2 0.1 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|219850931|ref|YP_002465363.1| - 0.00012 22.0 0.0 0.049 13.4 0.0 2.6 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|219850931|ref|YP_002465363.1| - 0.014 15.8 0.1 0.08 13.3 0.0 2.2 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|219850931|ref|YP_002465363.1| - 0.071 13.2 0.0 0.83 9.8 0.0 2.5 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase IF-2B PF01008.17 gi|219850932|ref|YP_002465364.1| - 8.7e-82 274.5 5.0 1e-81 274.3 5.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.22 gi|219850932|ref|YP_002465364.1| - 0.039 13.9 6.7 0.59 10.0 1.5 3.2 2 1 0 2 2 2 0 DeoR C terminal sensor domain RuBisCO_large PF00016.20 gi|219850933|ref|YP_002465365.1| - 5.9e-91 304.8 0.4 9.4e-91 304.1 0.4 1.3 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|219850933|ref|YP_002465365.1| - 1.6e-26 92.8 0.0 3.8e-26 91.6 0.0 1.6 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF3450 PF11932.8 gi|219850933|ref|YP_002465365.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DAP_epimerase PF01678.19 gi|219850934|ref|YP_002465366.1| - 3.7e-55 185.3 0.4 1.8e-29 102.4 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Rad51 PF08423.11 gi|219850935|ref|YP_002465367.1| - 8.5e-28 97.3 0.0 1.1e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|219850935|ref|YP_002465367.1| - 4.2e-10 39.5 0.0 6.3e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|219850935|ref|YP_002465367.1| - 1.3e-09 37.8 0.1 7.3e-09 35.3 0.1 1.8 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|219850935|ref|YP_002465367.1| - 9e-05 22.1 0.0 0.00019 21.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain Zot PF05707.12 gi|219850935|ref|YP_002465367.1| - 0.0038 16.9 0.0 0.0087 15.7 0.0 1.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) CLP1_P PF16575.5 gi|219850935|ref|YP_002465367.1| - 0.013 15.3 0.0 0.031 14.1 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF111 PF01969.17 gi|219850936|ref|YP_002465368.1| - 5e-109 364.8 3.0 5.7e-109 364.6 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF5043 PF16446.5 gi|219850936|ref|YP_002465368.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5043) AAA PF00004.29 gi|219850937|ref|YP_002465369.1| - 2.3e-95 316.0 0.0 2.6e-49 167.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|219850937|ref|YP_002465369.1| - 5.6e-29 100.2 0.1 2.9e-28 97.9 0.2 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|219850937|ref|YP_002465369.1| - 3.3e-26 90.8 3.9 8.4e-13 47.9 0.6 2.9 2 1 0 2 2 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|219850937|ref|YP_002465369.1| - 9.5e-13 48.2 0.0 5.4e-06 26.3 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|219850937|ref|YP_002465369.1| - 6.1e-12 46.3 2.5 2.9e-05 24.5 0.1 3.9 3 2 0 3 3 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|219850937|ref|YP_002465369.1| - 2.8e-10 40.3 0.5 0.00075 19.5 0.2 3.8 3 1 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|219850937|ref|YP_002465369.1| - 1e-09 38.1 0.0 0.00094 18.5 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_2 PF07724.14 gi|219850937|ref|YP_002465369.1| - 5.2e-09 36.4 0.0 7.3e-05 22.9 0.0 3.3 3 1 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|219850937|ref|YP_002465369.1| - 6.6e-09 36.2 1.4 0.012 15.9 0.1 4.6 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|219850937|ref|YP_002465369.1| - 7.1e-09 36.0 0.0 0.00098 19.3 0.0 3.2 3 0 0 3 3 3 2 AAA domain CDC48_2 PF02933.17 gi|219850937|ref|YP_002465369.1| - 2.8e-07 30.2 0.3 5.1e-06 26.2 0.2 2.8 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_18 PF13238.6 gi|219850937|ref|YP_002465369.1| - 6.4e-07 30.0 0.0 0.035 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|219850937|ref|YP_002465369.1| - 1e-06 28.6 0.0 0.065 13.0 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|219850937|ref|YP_002465369.1| - 1.2e-06 28.6 0.0 0.013 15.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|219850937|ref|YP_002465369.1| - 2e-06 27.4 0.5 0.058 12.8 0.1 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|219850937|ref|YP_002465369.1| - 8.1e-06 25.7 0.0 0.15 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|219850937|ref|YP_002465369.1| - 1.2e-05 24.9 0.0 0.16 11.5 0.0 2.6 3 0 0 3 3 2 2 P-loop containing dynein motor region AAA_28 PF13521.6 gi|219850937|ref|YP_002465369.1| - 1.5e-05 25.3 0.0 0.015 15.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|219850937|ref|YP_002465369.1| - 3.3e-05 24.2 0.0 0.16 12.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|219850937|ref|YP_002465369.1| - 4.4e-05 23.3 0.0 0.36 10.5 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.6 gi|219850937|ref|YP_002465369.1| - 5.7e-05 22.8 7.2 0.75 9.3 1.5 4.5 2 2 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|219850937|ref|YP_002465369.1| - 6.9e-05 22.3 0.9 0.47 9.8 0.1 3.2 2 1 1 3 3 3 2 KaiC PhoH PF02562.16 gi|219850937|ref|YP_002465369.1| - 0.00013 21.5 0.2 0.5 9.8 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|219850937|ref|YP_002465369.1| - 0.00014 21.1 0.1 0.37 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|219850937|ref|YP_002465369.1| - 0.00016 21.6 0.0 0.6 10.1 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|219850937|ref|YP_002465369.1| - 0.00024 20.3 0.0 0.32 10.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|219850937|ref|YP_002465369.1| - 0.00036 19.9 0.2 0.79 9.0 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|219850937|ref|YP_002465369.1| - 0.00041 20.5 0.0 1.2 9.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|219850937|ref|YP_002465369.1| - 0.00096 19.0 0.0 2.4 8.0 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|219850937|ref|YP_002465369.1| - 0.0011 18.7 0.0 1.7 8.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|219850937|ref|YP_002465369.1| - 0.0015 17.8 0.0 1.4 8.0 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|219850937|ref|YP_002465369.1| - 0.0016 18.3 0.0 2.3 8.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|219850937|ref|YP_002465369.1| - 0.0024 18.2 3.5 2.4 8.5 0.0 3.4 3 1 1 4 4 3 2 AAA domain ATPase_2 PF01637.18 gi|219850937|ref|YP_002465369.1| - 0.0034 17.3 0.1 15 5.4 0.0 3.3 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|219850937|ref|YP_002465369.1| - 0.0042 16.3 0.0 2.5 7.2 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain ABC_tran PF00005.27 gi|219850937|ref|YP_002465369.1| - 0.0058 17.2 0.0 4.3 7.8 0.0 2.7 2 0 0 2 2 2 0 ABC transporter AAA_17 PF13207.6 gi|219850937|ref|YP_002465369.1| - 0.007 16.8 0.1 5.6 7.4 0.0 3.2 3 0 0 3 3 2 0 AAA domain IPT PF01745.16 gi|219850937|ref|YP_002465369.1| - 0.011 15.2 0.3 3.3 7.0 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|219850937|ref|YP_002465369.1| - 0.017 14.9 2.0 3.9 7.2 0.1 3.4 3 0 0 3 3 3 0 Cytidylate kinase Rad17 PF03215.15 gi|219850937|ref|YP_002465369.1| - 0.027 14.4 0.0 9.7 6.1 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|219850937|ref|YP_002465369.1| - 0.028 13.8 0.0 10 5.5 0.0 3.2 2 1 1 3 3 3 0 Bacterial TniB protein Molydop_binding PF01568.21 gi|219850937|ref|YP_002465369.1| - 0.03 14.4 0.3 5.9 7.0 0.2 2.8 2 1 1 3 3 2 0 Molydopterin dinucleotide binding domain NACHT PF05729.12 gi|219850937|ref|YP_002465369.1| - 0.066 13.1 1.5 10 6.0 0.1 3.5 4 0 0 4 4 3 0 NACHT domain Guanylate_kin PF00625.21 gi|219850937|ref|YP_002465369.1| - 0.072 12.8 0.1 54 3.4 0.0 3.9 3 1 1 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|219850937|ref|YP_002465369.1| - 0.074 11.9 0.0 8 5.2 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase SKI PF01202.22 gi|219850937|ref|YP_002465369.1| - 0.077 13.1 0.0 8.5 6.5 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.15 gi|219850937|ref|YP_002465369.1| - 0.081 12.9 0.0 17 5.4 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin2 PF13189.6 gi|219850937|ref|YP_002465369.1| - 0.13 12.4 0.0 4 7.6 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_29 PF13555.6 gi|219850937|ref|YP_002465369.1| - 0.2 11.4 0.0 29 4.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|219850937|ref|YP_002465369.1| - 0.71 9.8 3.1 45 3.9 0.1 3.9 4 2 1 5 5 4 0 NTPase TauE PF01925.19 gi|219850938|ref|YP_002465370.1| - 2.5e-48 164.8 41.6 3.1e-48 164.5 41.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TMEMspv1-c74-12 PF11044.8 gi|219850938|ref|YP_002465370.1| - 0.63 10.1 3.4 6.3 6.9 0.1 2.5 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein TspO_MBR PF03073.15 gi|219850939|ref|YP_002465371.1| - 2.7e-45 153.8 21.8 3.1e-45 153.5 21.8 1.0 1 0 0 1 1 1 1 TspO/MBR family Cyt_bd_oxida_II PF02322.15 gi|219850939|ref|YP_002465371.1| - 0.04 13.3 19.2 0.045 13.1 19.2 1.0 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II AMP-binding PF00501.28 gi|219850940|ref|YP_002465372.1| - 6.9e-100 334.6 0.0 8e-100 334.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|219850940|ref|YP_002465372.1| - 9.4e-19 68.2 2.6 2.1e-18 67.1 0.1 2.4 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain PAS PF00989.25 gi|219850941|ref|YP_002465373.1| - 3.7e-28 97.8 0.2 6.9e-11 42.1 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|219850941|ref|YP_002465373.1| - 1.3e-25 89.6 0.0 2e-09 37.6 0.0 4.2 4 1 0 4 4 3 3 PAS domain PAS_3 PF08447.12 gi|219850941|ref|YP_002465373.1| - 5.8e-25 87.4 0.0 1.5e-15 57.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|219850941|ref|YP_002465373.1| - 1.9e-21 76.4 3.4 5.9e-09 36.2 0.0 4.3 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|219850941|ref|YP_002465373.1| - 2.2e-11 43.5 0.1 0.0053 16.8 0.0 3.7 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|219850941|ref|YP_002465373.1| - 6.9e-09 36.2 0.1 1.7e-08 35.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|219850941|ref|YP_002465373.1| - 7.6e-08 32.5 0.0 2.2e-07 31.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.24 gi|219850941|ref|YP_002465373.1| - 4.1e-07 30.2 0.5 2.8e-06 27.5 0.0 2.6 3 0 0 3 3 3 1 Response regulator receiver domain SPOB_a PF14689.6 gi|219850941|ref|YP_002465373.1| - 0.00048 19.8 0.5 0.0014 18.3 0.3 1.9 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|219850941|ref|YP_002465373.1| - 0.0025 17.4 0.0 0.0051 16.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|219850941|ref|YP_002465373.1| - 0.093 12.9 4.2 9 6.5 0.3 3.9 3 1 1 4 4 4 0 PAS fold LcrG PF07216.12 gi|219850941|ref|YP_002465373.1| - 0.2 11.6 3.2 0.63 10.0 0.2 2.7 3 0 0 3 3 3 0 LcrG protein HisKA PF00512.25 gi|219850941|ref|YP_002465373.1| - 0.42 10.7 4.7 0.27 11.3 0.3 2.8 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain ATPase PF06745.13 gi|219850942|ref|YP_002465374.1| - 2.5e-13 49.9 0.1 2.9e-07 30.1 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.11 gi|219850942|ref|YP_002465374.1| - 0.0001 21.6 0.2 0.0003 20.0 0.1 1.7 2 0 0 2 2 2 1 PAXNEB protein DUF835 PF05763.12 gi|219850942|ref|YP_002465374.1| - 0.00031 20.5 0.0 0.00052 19.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rad51 PF08423.11 gi|219850942|ref|YP_002465374.1| - 0.061 12.6 0.1 0.14 11.4 0.1 1.5 1 0 0 1 1 1 0 Rad51 MacB_PCD PF12704.7 gi|219850943|ref|YP_002465375.1| - 1e-22 81.5 8.1 1e-22 81.5 8.1 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|219850943|ref|YP_002465375.1| - 1.5e-10 41.3 7.1 1.5e-10 41.3 7.1 3.6 3 1 0 3 3 3 1 FtsX-like permease family Gly_rich PF12810.7 gi|219850943|ref|YP_002465375.1| - 2 8.3 24.8 1.1 9.1 22.4 1.7 1 1 0 1 1 1 0 Glycine rich protein RhlB PF12300.8 gi|219850943|ref|YP_002465375.1| - 8.7 6.4 7.7 15 5.7 7.7 1.3 1 0 0 1 1 1 0 ATP-dependent RNA helicase RhlB ABC_tran PF00005.27 gi|219850944|ref|YP_002465376.1| - 2.2e-31 109.2 0.0 2.8e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|219850944|ref|YP_002465376.1| - 8.7e-06 25.3 0.1 0.0012 18.3 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|219850944|ref|YP_002465376.1| - 0.0004 20.3 0.0 0.31 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|219850944|ref|YP_002465376.1| - 0.00089 18.9 0.2 0.0017 18.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|219850944|ref|YP_002465376.1| - 0.0023 17.9 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|219850944|ref|YP_002465376.1| - 0.0053 17.0 0.1 0.015 15.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|219850944|ref|YP_002465376.1| - 0.027 14.4 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|219850944|ref|YP_002465376.1| - 0.065 13.6 0.1 0.1 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|219850944|ref|YP_002465376.1| - 0.072 12.8 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|219850944|ref|YP_002465376.1| - 0.084 12.6 0.4 0.17 11.6 0.0 1.7 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|219850944|ref|YP_002465376.1| - 0.099 12.7 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|219850944|ref|YP_002465376.1| - 0.12 12.8 0.1 0.21 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|219850944|ref|YP_002465376.1| - 0.13 12.3 0.4 0.3 11.2 0.4 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase G-alpha PF00503.20 gi|219850944|ref|YP_002465376.1| - 0.18 11.0 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Gram_pos_anchor PF00746.21 gi|219850945|ref|YP_002465377.1| - 0.012 15.5 0.3 0.012 15.5 0.3 2.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Whirly PF08536.11 gi|219850945|ref|YP_002465377.1| - 0.027 14.3 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Whirly transcription factor DUF824 PF05688.11 gi|219850945|ref|YP_002465377.1| - 0.93 9.4 6.0 4.4 7.2 0.1 3.1 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) TrmB PF01978.19 gi|219850946|ref|YP_002465378.1| - 2.8e-18 65.6 0.2 4.9e-18 64.8 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|219850946|ref|YP_002465378.1| - 0.0021 17.3 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|219850946|ref|YP_002465378.1| - 0.025 14.4 0.3 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|219850946|ref|YP_002465378.1| - 0.089 13.0 1.3 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|219850946|ref|YP_002465378.1| - 0.1 12.5 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PAS PF00989.25 gi|219850947|ref|YP_002465379.1| - 9.5e-20 70.7 0.1 8.1e-10 38.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|219850947|ref|YP_002465379.1| - 1.3e-19 70.7 0.1 2.6e-19 69.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|219850947|ref|YP_002465379.1| - 4.1e-14 52.8 0.3 6.8e-06 26.3 0.0 3.2 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219850947|ref|YP_002465379.1| - 5.1e-13 49.2 0.0 3.1e-09 37.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|219850947|ref|YP_002465379.1| - 1.6e-10 40.7 0.1 0.00074 19.5 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|219850947|ref|YP_002465379.1| - 2.3e-10 40.6 0.0 1.8e-08 34.5 0.0 3.0 2 1 0 2 2 2 1 PAS fold ABC_sub_bind PF04392.12 gi|219850947|ref|YP_002465379.1| - 2e-08 33.8 0.0 4.1e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter substrate binding protein PAS_7 PF12860.7 gi|219850947|ref|YP_002465379.1| - 9.7e-05 22.5 7.1 0.2 11.8 0.0 5.0 4 2 0 4 4 4 2 PAS fold HisKA PF00512.25 gi|219850947|ref|YP_002465379.1| - 0.0001 22.2 0.0 0.00039 20.4 0.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Fzo_mitofusin PF04799.13 gi|219850947|ref|YP_002465379.1| - 0.013 15.0 1.6 0.025 14.1 1.6 1.4 1 0 0 1 1 1 0 fzo-like conserved region HPTransfase PF10090.9 gi|219850947|ref|YP_002465379.1| - 0.021 14.6 0.1 0.29 10.9 0.0 2.5 2 0 0 2 2 2 0 Histidine phosphotransferase C-terminal domain PAS_11 PF14598.6 gi|219850947|ref|YP_002465379.1| - 0.051 13.7 0.0 0.18 12.0 0.0 1.9 1 0 0 1 1 1 0 PAS domain DUF4179 PF13786.6 gi|219850948|ref|YP_002465380.1| - 0.047 14.1 2.2 0.063 13.8 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) PAP1 PF08601.10 gi|219850948|ref|YP_002465380.1| - 8.3 6.0 13.1 2.8 7.6 1.1 2.2 2 0 0 2 2 2 0 Transcription factor PAP1 Meth_synt_2 PF01717.18 gi|219850949|ref|YP_002465381.1| - 1e-47 163.0 3.9 2.5e-45 155.2 3.9 2.8 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|219850949|ref|YP_002465381.1| - 4.8e-05 23.0 0.0 7.7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|219850949|ref|YP_002465381.1| - 0.00073 18.8 0.0 0.0038 16.4 0.0 2.1 2 1 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) GDPD_2 PF13653.6 gi|219850949|ref|YP_002465381.1| - 0.11 13.0 0.0 2.9 8.5 0.0 2.4 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family tRNA-synt_2 PF00152.20 gi|219850950|ref|YP_002465382.1| - 5.2e-90 301.7 0.2 6.1e-90 301.5 0.2 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|219850950|ref|YP_002465382.1| - 1.7e-13 50.3 0.1 2.8e-13 49.6 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|219850950|ref|YP_002465382.1| - 0.0054 16.2 0.8 0.11 11.9 0.1 2.5 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) PLAC9 PF15205.6 gi|219850950|ref|YP_002465382.1| - 0.01 16.2 0.0 0.024 15.0 0.0 1.6 1 0 0 1 1 1 0 Placenta-specific protein 9 RDD PF06271.12 gi|219850951|ref|YP_002465383.1| - 2.1e-22 79.8 8.7 2.6e-22 79.6 8.7 1.1 1 0 0 1 1 1 1 RDD family zinc_ribbon_2 PF13240.6 gi|219850951|ref|YP_002465383.1| - 4.1e-06 26.3 1.5 7.3e-06 25.5 1.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|219850951|ref|YP_002465383.1| - 0.00018 20.8 0.5 0.00034 19.9 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219850951|ref|YP_002465383.1| - 0.00072 19.5 0.4 0.0014 18.6 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|219850951|ref|YP_002465383.1| - 0.036 14.0 1.1 3.1 7.8 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zf-tcix PF14952.6 gi|219850951|ref|YP_002465383.1| - 0.11 12.1 2.1 0.22 11.2 2.1 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding tRNA-synt_2e PF02091.15 gi|219850951|ref|YP_002465383.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit Ribosomal_L40e PF01020.17 gi|219850951|ref|YP_002465383.1| - 0.19 11.7 1.9 0.57 10.1 2.2 1.6 1 1 0 1 1 1 0 Ribosomal L40e family preSET_CXC PF18264.1 gi|219850951|ref|YP_002465383.1| - 0.49 10.9 9.9 0.37 11.3 5.6 2.1 2 0 0 2 2 2 0 CXC domain DNA_RNApol_7kD PF03604.13 gi|219850951|ref|YP_002465383.1| - 0.81 9.4 5.6 6.5 6.5 5.1 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Fasciclin PF02469.22 gi|219850952|ref|YP_002465384.1| - 1.4e-24 86.8 0.0 1.7e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain GTP_EFTU PF00009.27 gi|219850953|ref|YP_002465385.1| - 9.1e-64 214.6 0.3 1.7e-63 213.7 0.3 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|219850953|ref|YP_002465385.1| - 1.1e-25 89.7 0.0 3.9e-25 88.0 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|219850953|ref|YP_002465385.1| - 3.9e-25 87.7 1.5 1.1e-24 86.3 0.5 2.3 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|219850953|ref|YP_002465385.1| - 1.8e-24 85.6 0.1 8.6e-24 83.4 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|219850953|ref|YP_002465385.1| - 3.6e-15 56.1 0.7 3.6e-15 56.1 0.7 2.8 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|219850953|ref|YP_002465385.1| - 0.00036 20.6 0.0 0.00091 19.3 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|219850953|ref|YP_002465385.1| - 0.0094 15.8 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ribosomal_S7 PF00177.21 gi|219850954|ref|YP_002465386.1| - 2.8e-36 124.4 4.4 3.6e-36 124.1 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|219850955|ref|YP_002465387.1| - 1e-45 154.0 0.1 1.2e-45 153.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 PTPS PF01242.19 gi|219850956|ref|YP_002465388.1| - 1e-31 109.5 0.1 1.2e-31 109.2 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.6 gi|219850957|ref|YP_002465389.1| - 2.5e-15 56.6 0.7 3.7e-15 56.1 0.7 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|219850957|ref|YP_002465389.1| - 7.9e-12 45.9 0.7 1e-11 45.5 0.7 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219850957|ref|YP_002465389.1| - 6.2e-11 42.7 2.3 9.9e-11 42.1 2.3 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain QueC PF06508.13 gi|219850958|ref|YP_002465390.1| - 9.7e-74 247.4 0.0 1.1e-73 247.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|219850958|ref|YP_002465390.1| - 4.8e-08 32.8 0.0 1.8e-05 24.4 0.0 2.5 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|219850958|ref|YP_002465390.1| - 1e-05 25.4 0.0 1.4e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|219850958|ref|YP_002465390.1| - 9.5e-05 21.6 0.0 0.00013 21.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|219850958|ref|YP_002465390.1| - 0.00022 20.2 0.0 0.00028 19.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|219850958|ref|YP_002465390.1| - 0.00087 19.1 0.0 0.0024 17.7 0.0 1.7 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.19 gi|219850958|ref|YP_002465390.1| - 0.086 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase NUDIX PF00293.28 gi|219850959|ref|YP_002465391.1| - 1.5e-15 57.4 0.0 1.9e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Hydrolase_4 PF12146.8 gi|219850960|ref|YP_002465392.1| - 3.4e-11 42.9 0.1 1.1e-06 28.1 0.2 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|219850960|ref|YP_002465392.1| - 4.3e-05 24.2 0.1 0.00015 22.5 0.4 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|219850960|ref|YP_002465392.1| - 0.0006 19.5 0.5 0.18 11.5 0.2 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.12 gi|219850960|ref|YP_002465392.1| - 0.0042 15.8 0.7 0.028 13.1 0.7 1.9 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|219850960|ref|YP_002465392.1| - 0.14 11.6 0.3 3.8 6.9 0.3 2.7 1 1 0 1 1 1 0 Prolyl oligopeptidase family eRF1_2 PF03464.15 gi|219850961|ref|YP_002465393.1| - 8e-36 123.3 0.0 1.4e-35 122.5 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|219850961|ref|YP_002465393.1| - 5.4e-29 101.0 0.0 4e-28 98.2 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|219850961|ref|YP_002465393.1| - 1.3e-12 47.8 0.0 2.2e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|219850961|ref|YP_002465393.1| - 1.5e-11 44.7 0.0 1e-10 42.0 0.0 2.2 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|219850961|ref|YP_002465393.1| - 1.1e-10 42.0 0.0 1.8e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 Zn-ribbon_8 PF09723.10 gi|219850961|ref|YP_002465393.1| - 0.048 13.8 2.8 4.1 7.6 0.7 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|219850961|ref|YP_002465393.1| - 0.077 13.0 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PriA_CRR PF18319.1 gi|219850961|ref|YP_002465393.1| - 5.6 7.0 6.9 14 5.8 0.5 2.7 3 0 0 3 3 3 0 PriA DNA helicase Cys-rich region (CRR) domain tRNA-synt_1d PF00750.19 gi|219850962|ref|YP_002465394.1| - 4.5e-31 108.1 0.0 5.8e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|219850962|ref|YP_002465394.1| - 7e-29 100.4 0.0 1.8e-28 99.1 0.0 1.7 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|219850962|ref|YP_002465394.1| - 2.6e-11 43.9 0.3 1.8e-10 41.2 0.0 2.5 3 0 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|219850962|ref|YP_002465394.1| - 7.3e-06 25.1 0.0 0.033 13.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|219850962|ref|YP_002465394.1| - 0.00029 20.3 0.0 0.00098 18.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|219850962|ref|YP_002465394.1| - 0.00044 19.1 0.1 0.083 11.6 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|219850962|ref|YP_002465394.1| - 0.018 13.3 0.0 0.027 12.7 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Wyosine_form PF08608.12 gi|219850963|ref|YP_002465395.1| - 1.6e-19 70.0 0.0 3.7e-19 68.8 0.0 1.7 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|219850963|ref|YP_002465395.1| - 1.2e-16 61.5 0.0 2.9e-16 60.3 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Bac_DnaA_C PF08299.11 gi|219850963|ref|YP_002465395.1| - 0.1 12.6 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein helix-turn-helix tRNA-synt_2d PF01409.20 gi|219850964|ref|YP_002465396.1| - 3.5e-52 177.3 0.0 2.3e-49 168.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|219850964|ref|YP_002465396.1| - 1.2e-14 54.0 0.1 2.5e-14 53.0 0.1 1.6 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|219850964|ref|YP_002465396.1| - 8.9e-11 41.6 0.0 6.3e-08 32.3 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|219850964|ref|YP_002465396.1| - 0.096 12.7 0.1 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) Cas6b_N PF17955.1 gi|219850964|ref|YP_002465396.1| - 0.19 11.9 0.0 0.44 10.7 0.0 1.6 1 0 0 1 1 1 0 Cas6b N-terminal domain NRD1_2 PF01995.16 gi|219850965|ref|YP_002465397.1| - 4.3e-79 265.1 0.1 5.4e-79 264.8 0.1 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|219850965|ref|YP_002465397.1| - 1.2e-19 69.9 0.2 2.9e-19 68.8 0.2 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain dUTPase PF00692.19 gi|219850966|ref|YP_002465398.1| - 1e-17 64.0 0.0 1.2e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|219850966|ref|YP_002465398.1| - 0.0009 18.1 0.2 0.3 9.8 0.1 2.5 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Mobilization_B PF17511.2 gi|219850967|ref|YP_002465399.1| - 0.01 16.2 0.7 0.01 16.2 0.7 2.8 2 1 1 3 3 3 0 Mobilization protein B DUF3452 PF11934.8 gi|219850967|ref|YP_002465399.1| - 6.5 6.3 8.3 1.1 8.8 1.2 2.7 1 1 1 3 3 3 0 Domain of unknown function (DUF3452) DUF373 PF04123.13 gi|219850968|ref|YP_002465400.1| - 2.4e-119 398.7 13.4 2.9e-119 398.4 13.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) GyrI-like PF06445.15 gi|219850970|ref|YP_002465402.1| - 1.8e-14 54.3 0.0 2e-14 54.2 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain MerR PF00376.23 gi|219850970|ref|YP_002465402.1| - 9.6e-05 22.1 0.1 0.00025 20.8 0.0 1.7 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|219850970|ref|YP_002465402.1| - 0.0054 16.8 0.0 0.0092 16.1 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MMR_HSR1_C PF08438.10 gi|219850971|ref|YP_002465403.1| - 1e-25 90.4 0.0 3.3e-25 88.8 0.0 1.8 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|219850971|ref|YP_002465403.1| - 1.7e-20 73.2 0.0 5.9e-20 71.5 0.0 2.0 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|219850971|ref|YP_002465403.1| - 5.9e-14 51.9 0.1 3.7e-13 49.3 0.0 2.2 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|219850971|ref|YP_002465403.1| - 3.2e-10 39.7 0.2 9.3e-09 35.0 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|219850971|ref|YP_002465403.1| - 0.063 13.5 0.0 0.43 10.8 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Arf PF00025.21 gi|219850971|ref|YP_002465403.1| - 0.12 11.8 0.3 6.1 6.3 0.1 3.0 3 0 0 3 3 3 0 ADP-ribosylation factor family HSP20 PF00011.21 gi|219850972|ref|YP_002465404.1| - 1.5e-12 47.5 0.1 1.8e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|219850972|ref|YP_002465404.1| - 1e-07 31.4 0.1 1.8e-07 30.6 0.1 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|219850972|ref|YP_002465404.1| - 0.04 14.9 0.1 0.051 14.6 0.1 1.2 1 0 0 1 1 1 0 CS domain GvpH PF05455.11 gi|219850972|ref|YP_002465404.1| - 0.093 12.8 0.2 0.12 12.5 0.2 1.3 1 1 0 1 1 1 0 GvpH Radical_SAM PF04055.21 gi|219850973|ref|YP_002465405.1| - 2.3e-24 86.7 0.1 3.3e-24 86.1 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|219850973|ref|YP_002465405.1| - 0.00011 22.3 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|219850973|ref|YP_002465405.1| - 0.00067 19.9 0.0 0.0013 19.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rubrerythrin PF02915.17 gi|219850974|ref|YP_002465406.1| - 5.4e-20 72.2 5.4 3e-18 66.5 5.4 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|219850974|ref|YP_002465406.1| - 0.00016 21.6 1.8 0.00037 20.5 1.8 1.5 1 1 0 1 1 1 1 Ferritin-like domain RecR PF02132.15 gi|219850974|ref|YP_002465406.1| - 0.002 17.7 1.2 0.002 17.7 1.2 1.8 2 0 0 2 2 2 1 RecR protein Desulfoferrod_N PF06397.12 gi|219850974|ref|YP_002465406.1| - 0.024 14.2 0.2 0.024 14.2 0.2 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-P11 PF03854.14 gi|219850974|ref|YP_002465406.1| - 0.025 14.2 0.1 0.045 13.4 0.1 1.3 1 0 0 1 1 1 0 P-11 zinc finger DUF4428 PF14471.6 gi|219850974|ref|YP_002465406.1| - 0.13 12.2 2.4 0.98 9.4 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-ribbon_3 PF13248.6 gi|219850974|ref|YP_002465406.1| - 0.17 11.3 4.2 0.8 9.2 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|219850974|ref|YP_002465406.1| - 1 9.4 3.5 14 5.8 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-C2H2_12 PF18112.1 gi|219850974|ref|YP_002465406.1| - 5.1 7.7 5.7 24 5.5 0.6 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain RadC PF04002.15 gi|219850975|ref|YP_002465407.1| - 1.6e-37 128.1 0.0 2.7e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 gi|219850975|ref|YP_002465407.1| - 0.001 18.8 0.0 0.0017 18.1 0.0 1.7 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain FMN_red PF03358.15 gi|219850976|ref|YP_002465408.1| - 6.4e-21 74.7 0.0 8.7e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219850976|ref|YP_002465408.1| - 3.7e-09 36.6 0.0 4.8e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF1451 PF07295.11 gi|219850977|ref|YP_002465409.1| - 5e-07 29.9 3.8 6e-07 29.6 3.8 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain A2L_zn_ribbon PF08792.10 gi|219850977|ref|YP_002465409.1| - 0.001 18.8 6.1 0.071 12.9 6.5 2.2 1 1 0 1 1 1 1 A2L zinc ribbon domain HypA PF01155.19 gi|219850977|ref|YP_002465409.1| - 0.0032 17.5 2.4 0.0036 17.3 2.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|219850977|ref|YP_002465409.1| - 0.16 12.1 7.6 0.31 11.2 7.6 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 gi|219850978|ref|YP_002465410.1| - 2.1e-16 59.2 9.9 2.4e-16 59.0 9.9 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain CMD PF02627.20 gi|219850979|ref|YP_002465411.1| - 1.8e-15 56.8 2.2 2.1e-15 56.5 2.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family FlaC_arch PF05377.11 gi|219850979|ref|YP_002465411.1| - 0.089 13.2 0.0 0.19 12.1 0.0 1.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) AhpC-TSA PF00578.21 gi|219850980|ref|YP_002465412.1| - 2.4e-35 121.2 0.0 3.4e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|219850980|ref|YP_002465412.1| - 4.6e-19 68.6 0.0 7.2e-19 68.0 0.0 1.3 1 1 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|219850980|ref|YP_002465412.1| - 1.9e-13 50.0 1.6 3.1e-13 49.3 1.6 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin FMN_red PF03358.15 gi|219850981|ref|YP_002465413.1| - 1.5e-19 70.3 0.0 2.1e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219850981|ref|YP_002465413.1| - 3.5e-10 39.9 0.0 4.7e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|219850982|ref|YP_002465414.1| - 3.7e-18 65.7 0.0 4.5e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219850982|ref|YP_002465414.1| - 2.2e-09 37.3 0.0 2.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold CTP_transf_like PF01467.26 gi|219850983|ref|YP_002465415.1| - 7.2e-17 61.9 0.0 7.6e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|219850983|ref|YP_002465415.1| - 0.11 12.4 0.0 0.4 10.6 0.0 2.0 1 1 0 1 1 1 0 FAD synthetase Prok-JAB PF14464.6 gi|219850984|ref|YP_002465416.1| - 2.4e-07 30.5 0.0 3.2e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|219850984|ref|YP_002465416.1| - 0.0043 17.0 0.0 0.005 16.8 0.0 1.1 1 0 0 1 1 1 1 RadC-like JAB domain SIS PF01380.22 gi|219850985|ref|YP_002465417.1| - 4.1e-53 178.7 0.6 5.9e-26 90.9 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|219850985|ref|YP_002465417.1| - 1.6e-21 76.9 0.0 3.1e-21 76.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|219850985|ref|YP_002465417.1| - 3e-18 65.9 0.0 4.8e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|219850985|ref|YP_002465417.1| - 0.012 14.5 0.0 0.021 13.7 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|219850985|ref|YP_002465417.1| - 0.024 14.7 0.1 3.3 7.7 0.0 2.5 2 0 0 2 2 2 0 SIS domain NTP_transferase PF00483.23 gi|219850986|ref|YP_002465418.1| - 3.8e-33 115.1 0.0 5.3e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|219850986|ref|YP_002465418.1| - 7.1e-19 66.7 12.0 3.2e-09 36.2 2.4 4.6 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|219850986|ref|YP_002465418.1| - 1.3e-15 58.1 0.0 1.8e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|219850986|ref|YP_002465418.1| - 5e-11 42.2 10.5 3.8e-06 26.5 0.3 4.6 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|219850986|ref|YP_002465418.1| - 5.5e-05 23.0 0.3 9e-05 22.3 0.3 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|219850986|ref|YP_002465418.1| - 0.00086 17.6 1.7 0.0045 15.2 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4954) NTP_transferase PF00483.23 gi|219850987|ref|YP_002465419.1| - 4e-32 111.7 0.0 5.1e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|219850987|ref|YP_002465419.1| - 1.5e-19 68.9 21.7 4.5e-09 35.7 0.3 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|219850987|ref|YP_002465419.1| - 1.7e-11 44.7 0.0 2.1e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|219850987|ref|YP_002465419.1| - 1.7e-08 34.0 24.3 2.4e-06 27.2 0.2 4.7 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|219850987|ref|YP_002465419.1| - 0.00026 20.8 0.0 0.00041 20.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|219850987|ref|YP_002465419.1| - 0.15 10.2 0.5 0.37 8.9 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) PGM_PMM_I PF02878.16 gi|219850988|ref|YP_002465420.1| - 1.7e-28 99.0 0.0 3e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|219850988|ref|YP_002465420.1| - 6.6e-19 68.4 0.0 1.3e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|219850988|ref|YP_002465420.1| - 4.9e-14 52.5 0.0 9.9e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|219850988|ref|YP_002465420.1| - 1.7e-10 40.9 0.1 4.4e-10 39.6 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain tRNA_m1G_MT PF01746.21 gi|219850988|ref|YP_002465420.1| - 0.015 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase Cyclase PF04199.13 gi|219850990|ref|YP_002465422.1| - 1.4e-25 90.1 0.0 1.8e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PCMT PF01135.19 gi|219850991|ref|YP_002465423.1| - 1.6e-58 198.0 0.0 1.9e-58 197.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|219850991|ref|YP_002465423.1| - 7.1e-06 25.3 0.0 1.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|219850991|ref|YP_002465423.1| - 1.5e-05 24.9 0.0 2.2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219850991|ref|YP_002465423.1| - 2.2e-05 24.3 0.0 2.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219850991|ref|YP_002465423.1| - 4.9e-05 23.9 0.0 7.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219850991|ref|YP_002465423.1| - 0.003 18.2 0.0 0.0047 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|219850991|ref|YP_002465423.1| - 0.14 11.6 0.1 0.2 11.0 0.1 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase GCD14 PF08704.10 gi|219850991|ref|YP_002465423.1| - 0.18 11.4 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Apolipoprotein PF01442.18 gi|219850992|ref|YP_002465424.1| - 0.05 13.5 0.9 0.059 13.3 0.9 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF883 PF05957.13 gi|219850992|ref|YP_002465424.1| - 0.063 13.9 4.5 1.1 9.9 0.9 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|219850992|ref|YP_002465424.1| - 1.8 9.1 6.3 6.5 7.4 6.3 1.8 1 1 0 1 1 1 0 YtxH-like protein DUF1328 PF07043.13 gi|219850993|ref|YP_002465425.1| - 1.3e-11 44.5 17.9 2.2e-11 43.8 17.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) SecG PF03840.14 gi|219850993|ref|YP_002465425.1| - 1.2 9.3 14.9 0.33 11.1 5.8 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit DUF1328 PF07043.13 gi|219850995|ref|YP_002465427.1| - 1.5e-11 44.3 18.3 2e-11 43.9 18.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) SecG PF03840.14 gi|219850995|ref|YP_002465427.1| - 1.2 9.3 14.9 0.34 11.0 5.8 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit Tetraspanin PF00335.20 gi|219850995|ref|YP_002465427.1| - 2.7 7.6 10.1 3 7.5 10.1 1.0 1 0 0 1 1 1 0 Tetraspanin family Hydrolase_6 PF13344.6 gi|219850997|ref|YP_002465429.1| - 1.2e-18 67.0 0.0 2.7e-18 65.9 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|219850997|ref|YP_002465429.1| - 1.5e-17 63.4 0.1 4.2e-17 62.0 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|219850997|ref|YP_002465429.1| - 7e-09 36.3 0.6 0.00011 22.5 0.0 3.0 2 2 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|219850997|ref|YP_002465429.1| - 3.8e-08 33.6 0.0 3e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|219850997|ref|YP_002465429.1| - 0.046 13.2 0.0 0.063 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) GATase PF00117.28 gi|219850998|ref|YP_002465430.1| - 1.1e-13 51.3 0.0 1.6e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|219850998|ref|YP_002465430.1| - 1.1e-07 31.8 0.0 1.9e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|219850998|ref|YP_002465430.1| - 0.00066 19.3 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|219850998|ref|YP_002465430.1| - 0.055 13.3 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family fn3_PAP PF17808.1 gi|219850998|ref|YP_002465430.1| - 0.16 12.1 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Fn3-like domain from Purple Acid Phosphatase Bac_luciferase PF00296.20 gi|219851000|ref|YP_002465432.1| - 4.2e-49 167.7 0.0 5.1e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.22 gi|219851000|ref|YP_002465432.1| - 0.11 13.3 0.1 1.2 10.0 0.0 2.5 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold MTD PF01993.18 gi|219851002|ref|YP_002465434.1| - 6.8e-121 402.8 1.5 7.6e-121 402.6 1.5 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase TFX_C PF14601.6 gi|219851003|ref|YP_002465435.1| - 2.7e-31 107.4 0.0 4.4e-31 106.7 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|219851003|ref|YP_002465435.1| - 1.6e-08 33.9 0.7 3.1e-08 33.0 0.7 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|219851003|ref|YP_002465435.1| - 6.2e-07 28.9 0.4 9e-07 28.3 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|219851003|ref|YP_002465435.1| - 0.00028 20.5 0.2 0.00078 19.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 LXG PF04740.12 gi|219851003|ref|YP_002465435.1| - 0.019 14.7 0.3 0.026 14.2 0.3 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily HTH_7 PF02796.15 gi|219851003|ref|YP_002465435.1| - 0.036 14.2 0.2 0.091 12.8 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|219851003|ref|YP_002465435.1| - 0.058 13.2 0.1 0.15 11.8 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|219851003|ref|YP_002465435.1| - 0.063 13.5 0.2 0.13 12.5 0.2 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TFIIB PF00382.19 gi|219851004|ref|YP_002465436.1| - 2.1e-43 146.2 1.6 4.1e-21 74.8 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|219851004|ref|YP_002465436.1| - 1.3e-18 66.2 0.6 1.3e-18 66.2 0.6 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|219851004|ref|YP_002465436.1| - 1.6e-05 24.3 1.7 0.0033 16.9 0.3 3.3 2 1 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|219851004|ref|YP_002465436.1| - 0.0015 18.5 0.7 0.0032 17.4 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RPA_interact_C PF14768.6 gi|219851004|ref|YP_002465436.1| - 0.0022 18.5 0.1 0.15 12.7 0.0 2.4 2 0 0 2 2 2 1 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|219851004|ref|YP_002465436.1| - 0.0052 16.6 1.7 0.029 14.2 0.3 2.9 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF2318 PF10080.9 gi|219851004|ref|YP_002465436.1| - 0.015 15.4 0.4 0.057 13.5 0.1 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) Lar_restr_allev PF14354.6 gi|219851004|ref|YP_002465436.1| - 0.03 14.7 0.5 0.33 11.4 0.2 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|219851004|ref|YP_002465436.1| - 0.033 13.9 1.5 0.098 12.4 1.5 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain HTH_3 PF01381.22 gi|219851004|ref|YP_002465436.1| - 0.034 14.2 0.4 2 8.5 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix Ribosomal_S27e PF01667.17 gi|219851004|ref|YP_002465436.1| - 0.035 13.8 0.5 0.035 13.8 0.5 1.7 2 0 0 2 2 2 0 Ribosomal protein S27 HTH_31 PF13560.6 gi|219851004|ref|YP_002465436.1| - 0.037 14.4 6.3 2.2 8.7 0.3 3.7 3 0 0 3 3 3 0 Helix-turn-helix domain UPF0253 PF06786.12 gi|219851004|ref|YP_002465436.1| - 0.04 14.2 0.2 0.45 10.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Cyclin_C PF02984.19 gi|219851004|ref|YP_002465436.1| - 0.046 13.8 0.0 12 6.0 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4_2 PF08281.12 gi|219851004|ref|YP_002465436.1| - 0.094 12.4 0.7 0.73 9.5 0.1 2.7 2 2 0 2 2 2 0 Sigma-70, region 4 DZR PF12773.7 gi|219851004|ref|YP_002465436.1| - 0.11 12.5 1.2 0.55 10.3 0.4 2.2 2 0 0 2 2 2 0 Double zinc ribbon SR1P PF13790.6 gi|219851004|ref|YP_002465436.1| - 1.4 9.0 6.0 5.1 7.3 0.3 2.9 3 0 0 3 3 3 0 SR1 protein Zn-ribbon_8 PF09723.10 gi|219851004|ref|YP_002465436.1| - 5.3 7.3 8.0 3.5 7.8 0.9 2.9 2 1 1 3 3 3 0 Zinc ribbon domain Gar1 PF04410.14 gi|219851005|ref|YP_002465437.1| - 9.4e-10 38.5 0.0 9.7e-10 38.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region RNase_P_p30 PF01876.16 gi|219851006|ref|YP_002465438.1| - 1.9e-05 24.3 0.0 6.1e-05 22.6 0.0 1.9 1 1 0 1 1 1 1 RNase P subunit p30 PHP PF02811.19 gi|219851006|ref|YP_002465438.1| - 0.0022 18.3 0.0 0.0025 18.1 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|219851006|ref|YP_002465438.1| - 0.047 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 PHP-associated SRP19 PF01922.17 gi|219851007|ref|YP_002465439.1| - 6.3e-14 52.7 0.0 7.6e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein cobW PF02492.19 gi|219851008|ref|YP_002465440.1| - 4.6e-21 75.2 0.0 5.5e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|219851008|ref|YP_002465440.1| - 4.9e-06 25.7 0.3 0.012 14.6 0.0 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|219851008|ref|YP_002465440.1| - 0.00013 21.8 0.0 0.0003 20.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|219851008|ref|YP_002465440.1| - 0.0091 15.7 0.0 4.2 7.1 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 gi|219851008|ref|YP_002465440.1| - 0.0095 15.6 0.0 0.015 14.9 0.0 1.4 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|219851008|ref|YP_002465440.1| - 0.022 14.3 0.1 6.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|219851008|ref|YP_002465440.1| - 0.12 12.3 0.0 4.7 7.1 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|219851008|ref|YP_002465440.1| - 0.15 12.4 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|219851008|ref|YP_002465440.1| - 0.16 11.7 0.0 0.39 10.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|219851008|ref|YP_002465440.1| - 0.18 11.7 0.1 0.33 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Ribosomal_S8e PF01201.22 gi|219851009|ref|YP_002465441.1| - 4.9e-35 120.7 1.7 5.5e-35 120.5 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.9 gi|219851010|ref|YP_002465442.1| - 3e-37 127.5 0.0 3.4e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_S6e PF01092.19 gi|219851011|ref|YP_002465443.1| - 6e-37 126.4 0.0 6.7e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e YqcI_YcgG PF08892.11 gi|219851011|ref|YP_002465443.1| - 0.094 12.5 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 YqcI/YcgG family GTP_EFTU PF00009.27 gi|219851012|ref|YP_002465444.1| - 1.7e-33 115.8 0.0 3.1e-33 115.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|219851012|ref|YP_002465444.1| - 8.3e-27 92.9 0.4 8.3e-27 92.9 0.4 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|219851012|ref|YP_002465444.1| - 1.1e-16 60.8 1.8 2.8e-16 59.6 0.3 2.4 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|219851012|ref|YP_002465444.1| - 1.9e-11 44.2 3.4 1.4e-07 31.7 0.0 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|219851012|ref|YP_002465444.1| - 7.6e-08 32.4 0.0 3.4e-07 30.3 0.0 2.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|219851012|ref|YP_002465444.1| - 0.00077 19.3 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|219851012|ref|YP_002465444.1| - 0.0012 18.9 0.2 0.11 12.6 0.0 2.6 1 1 1 2 2 2 1 Dynamin family Roc PF08477.13 gi|219851012|ref|YP_002465444.1| - 0.019 15.2 0.0 0.04 14.1 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Tir_receptor_N PF07490.11 gi|219851012|ref|YP_002465444.1| - 0.098 12.5 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus DUF5305 PF17231.2 gi|219851013|ref|YP_002465445.1| - 1.5 8.1 5.9 2.5 7.4 1.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5305) TrbC PF04956.13 gi|219851013|ref|YP_002465445.1| - 4.6 7.5 5.8 8.4 6.7 0.4 3.0 3 0 0 3 3 3 0 TrbC/VIRB2 family FlgD_ig PF13860.6 gi|219851014|ref|YP_002465446.1| - 0.03 14.2 0.3 0.32 10.9 0.0 2.7 2 1 0 2 2 2 0 FlgD Ig-like domain ANAPC4_WD40 PF12894.7 gi|219851015|ref|YP_002465447.1| - 3.8e-05 23.9 0.1 2 8.8 0.0 4.6 3 1 2 5 5 5 2 Anaphase-promoting complex subunit 4 WD40 domain PQQ_3 PF13570.6 gi|219851015|ref|YP_002465447.1| - 0.00011 22.6 24.8 0.069 13.7 0.1 6.4 7 1 1 8 8 8 4 PQQ-like domain WD40 PF00400.32 gi|219851015|ref|YP_002465447.1| - 0.0002 22.1 9.2 14 6.7 0.0 7.0 7 0 0 7 7 7 2 WD domain, G-beta repeat PQQ PF01011.21 gi|219851015|ref|YP_002465447.1| - 0.0086 16.0 7.5 0.23 11.5 0.3 4.7 5 0 0 5 5 5 1 PQQ enzyme repeat Arylsulfotrans PF05935.11 gi|219851015|ref|YP_002465447.1| - 0.021 13.7 0.1 0.19 10.6 0.0 2.3 1 1 1 2 2 2 0 Arylsulfotransferase (ASST) Ge1_WD40 PF16529.5 gi|219851015|ref|YP_002465447.1| - 0.28 10.1 5.9 10 5.0 0.1 3.8 2 2 2 4 4 4 0 WD40 region of Ge1, enhancer of mRNA-decapping protein Glycos_transf_2 PF00535.26 gi|219851017|ref|YP_002465449.1| - 0.00013 21.8 0.0 0.00018 21.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Epimerase_2 PF02350.19 gi|219851018|ref|YP_002465450.1| - 3.1e-117 391.3 0.0 3.7e-117 391.1 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.12 gi|219851018|ref|YP_002465450.1| - 0.024 13.7 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|219851018|ref|YP_002465450.1| - 0.077 13.0 0.0 0.18 11.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Epimerase PF01370.21 gi|219851019|ref|YP_002465451.1| - 8.1e-43 146.6 0.1 1e-42 146.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219851019|ref|YP_002465451.1| - 1.2e-28 100.5 1.1 5.3e-28 98.4 1.1 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|219851019|ref|YP_002465451.1| - 1.7e-14 53.6 0.1 5.6e-11 42.1 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|219851019|ref|YP_002465451.1| - 3.5e-12 46.0 0.0 5.4e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|219851019|ref|YP_002465451.1| - 4.9e-12 45.4 0.0 9e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|219851019|ref|YP_002465451.1| - 8.7e-07 28.3 0.0 0.0001 21.6 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|219851019|ref|YP_002465451.1| - 0.0017 17.8 0.0 0.018 14.5 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase NPHI_C PF08469.10 gi|219851019|ref|YP_002465451.1| - 0.058 13.4 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 Nucleoside triphosphatase I C-terminal NAD_binding_10 PF13460.6 gi|219851019|ref|YP_002465451.1| - 0.06 13.2 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding Glyco_transf_4 PF13439.6 gi|219851019|ref|YP_002465451.1| - 0.073 13.1 0.3 0.21 11.6 0.3 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 DUF4513 PF14983.6 gi|219851019|ref|YP_002465451.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4513) KR PF08659.10 gi|219851019|ref|YP_002465451.1| - 0.16 11.9 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 KR domain NAD_binding_2 PF03446.15 gi|219851019|ref|YP_002465451.1| - 0.17 12.0 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Epimerase PF01370.21 gi|219851020|ref|YP_002465452.1| - 1.2e-52 178.8 0.0 1.5e-52 178.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219851020|ref|YP_002465452.1| - 9.5e-49 166.6 0.0 1.3e-48 166.2 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|219851020|ref|YP_002465452.1| - 2.1e-17 63.2 0.0 4.8e-13 48.9 0.0 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|219851020|ref|YP_002465452.1| - 7.6e-15 54.7 0.0 1.1e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|219851020|ref|YP_002465452.1| - 2.6e-11 43.2 0.0 4.7e-11 42.3 0.0 1.3 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|219851020|ref|YP_002465452.1| - 1.4e-05 25.1 0.0 1.9e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|219851020|ref|YP_002465452.1| - 1.6e-05 24.4 0.0 5.7e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_4 PF07993.12 gi|219851020|ref|YP_002465452.1| - 3.4e-05 23.2 0.1 0.00036 19.8 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|219851020|ref|YP_002465452.1| - 0.00014 21.9 0.0 0.00029 20.8 0.0 1.6 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|219851020|ref|YP_002465452.1| - 0.0036 16.9 0.0 0.0068 16.0 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|219851020|ref|YP_002465452.1| - 0.019 15.2 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain Glycos_transf_1 PF00534.20 gi|219851021|ref|YP_002465453.1| - 1.2e-16 60.7 0.0 2.6e-16 59.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219851021|ref|YP_002465453.1| - 1.7e-16 60.9 0.0 4.4e-16 59.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|219851021|ref|YP_002465453.1| - 9.3e-16 58.7 0.6 1.6e-15 57.9 0.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|219851021|ref|YP_002465453.1| - 9e-15 55.1 1.2 1.4e-14 54.4 1.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|219851021|ref|YP_002465453.1| - 9.7e-06 25.9 0.0 2.4e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|219851021|ref|YP_002465453.1| - 0.023 14.7 0.2 0.23 11.5 0.2 2.2 1 1 0 1 1 1 0 Glycosyl transferase 4-like Methyltransf_25 PF13649.6 gi|219851022|ref|YP_002465454.1| - 7.8e-15 55.4 0.0 1.3e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851022|ref|YP_002465454.1| - 4.9e-14 52.7 0.0 8.3e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851022|ref|YP_002465454.1| - 8.7e-11 41.8 0.4 1.2e-10 41.4 0.4 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851022|ref|YP_002465454.1| - 1.3e-07 31.2 0.0 1.7e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|219851022|ref|YP_002465454.1| - 1.2e-06 29.1 0.0 2e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851022|ref|YP_002465454.1| - 3.2e-05 23.8 0.0 4.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|219851022|ref|YP_002465454.1| - 0.12 11.8 0.6 0.43 10.0 0.1 2.1 3 0 0 3 3 3 0 Spermine/spermidine synthase domain Methyltransf_9 PF08003.11 gi|219851022|ref|YP_002465454.1| - 0.18 10.7 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|219851022|ref|YP_002465454.1| - 0.2 11.4 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF362 PF04015.12 gi|219851023|ref|YP_002465455.1| - 7.5e-42 143.9 0.0 1e-41 143.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Methyltransf_21 PF05050.12 gi|219851024|ref|YP_002465456.1| - 3.3e-16 59.8 0.0 4.7e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|219851024|ref|YP_002465456.1| - 9.8e-06 25.0 0.1 1.4e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|219851024|ref|YP_002465456.1| - 0.00047 20.0 0.2 0.00072 19.4 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Glycos_transf_2 PF00535.26 gi|219851025|ref|YP_002465457.1| - 1.8e-21 76.7 0.0 3.1e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219851025|ref|YP_002465457.1| - 4e-14 53.1 0.0 7.9e-14 52.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219851025|ref|YP_002465457.1| - 2.3e-12 47.0 1.0 3.7e-11 43.0 0.9 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|219851025|ref|YP_002465457.1| - 2.5e-06 27.5 0.0 3.8e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|219851025|ref|YP_002465457.1| - 0.0025 18.3 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|219851025|ref|YP_002465457.1| - 0.0086 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|219851025|ref|YP_002465457.1| - 0.12 12.0 0.1 0.24 11.1 0.1 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.20 gi|219851026|ref|YP_002465458.1| - 1e-35 122.8 0.0 1.6e-35 122.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219851026|ref|YP_002465458.1| - 1.4e-26 93.5 0.0 2.2e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|219851026|ref|YP_002465458.1| - 2e-22 80.0 0.0 3.7e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|219851026|ref|YP_002465458.1| - 5.1e-12 46.5 0.0 6.9e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|219851026|ref|YP_002465458.1| - 3.7e-05 24.0 0.0 0.00015 22.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|219851026|ref|YP_002465458.1| - 0.00086 19.1 0.5 0.063 13.0 0.5 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|219851026|ref|YP_002465458.1| - 0.012 15.6 1.7 0.036 14.1 1.7 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like Methyltransf_11 PF08241.12 gi|219851027|ref|YP_002465459.1| - 4.4e-05 24.1 0.0 0.00018 22.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851027|ref|YP_002465459.1| - 0.00018 21.3 0.1 0.00026 20.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851027|ref|YP_002465459.1| - 0.0031 18.2 0.0 0.018 15.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851027|ref|YP_002465459.1| - 0.0051 16.6 0.0 0.028 14.2 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Glycos_transf_1 PF00534.20 gi|219851028|ref|YP_002465460.1| - 2.7e-36 124.7 0.0 5.7e-36 123.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219851028|ref|YP_002465460.1| - 1.1e-27 97.1 0.0 2.2e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|219851028|ref|YP_002465460.1| - 5.7e-06 26.6 0.0 1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 PMT_2 PF13231.6 gi|219851029|ref|YP_002465461.1| - 0.003 17.8 12.6 0.003 17.8 12.6 3.9 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Biotin_lipoyl PF00364.22 gi|219851030|ref|YP_002465462.1| - 0.13 12.1 0.1 0.16 11.8 0.1 1.3 1 1 0 1 1 1 0 Biotin-requiring enzyme Polysacc_synt PF01943.17 gi|219851031|ref|YP_002465463.1| - 1e-12 48.0 28.1 1e-12 48.0 28.1 3.1 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Glycos_transf_1 PF00534.20 gi|219851032|ref|YP_002465464.1| - 7.2e-38 129.8 0.0 1.3e-37 128.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219851032|ref|YP_002465464.1| - 1.2e-31 109.9 0.0 2.2e-31 109.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219851032|ref|YP_002465464.1| - 2.3e-24 86.3 0.0 5.6e-24 85.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|219851032|ref|YP_002465464.1| - 1.3e-11 45.2 0.0 4.1e-11 43.6 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|219851032|ref|YP_002465464.1| - 4e-10 39.9 0.5 7.8e-10 38.9 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|219851032|ref|YP_002465464.1| - 1.2e-05 25.6 0.0 3e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3231 PF11553.8 gi|219851032|ref|YP_002465464.1| - 0.0065 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3231) Miff PF05644.11 gi|219851038|ref|YP_002465470.1| - 0.054 13.1 0.5 0.11 12.1 0.5 1.4 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff Prim_Zn_Ribbon PF08273.12 gi|219851038|ref|YP_002465470.1| - 0.2 12.0 12.7 0.44 10.9 2.6 3.3 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-FPG_IleRS PF06827.14 gi|219851038|ref|YP_002465470.1| - 0.8 9.6 6.6 7.9 6.4 0.6 2.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.16 gi|219851038|ref|YP_002465470.1| - 1.9 8.6 5.6 1.2 9.2 0.3 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain HTH_3 PF01381.22 gi|219851039|ref|YP_002465471.1| - 0.0037 17.3 0.1 0.012 15.7 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix LacI PF00356.21 gi|219851039|ref|YP_002465471.1| - 0.014 15.2 0.0 0.32 10.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family Cro PF09048.10 gi|219851039|ref|YP_002465471.1| - 0.017 15.1 0.4 0.043 13.9 0.1 1.8 2 0 0 2 2 2 0 Cro Sigma70_r4 PF04545.16 gi|219851039|ref|YP_002465471.1| - 0.026 14.0 0.1 0.077 12.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|219851039|ref|YP_002465471.1| - 0.04 13.8 0.4 0.49 10.3 0.1 2.3 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_10 PF04967.12 gi|219851039|ref|YP_002465471.1| - 0.057 13.2 0.7 0.53 10.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_50 PF18024.1 gi|219851039|ref|YP_002465471.1| - 0.068 12.8 1.3 0.16 11.6 0.1 2.2 2 1 1 3 3 3 0 Helix-turn-helix domain P22_Cro PF14549.6 gi|219851039|ref|YP_002465471.1| - 0.083 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_1 PF00126.27 gi|219851039|ref|YP_002465471.1| - 0.09 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|219851039|ref|YP_002465471.1| - 0.11 12.1 0.6 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|219851042|ref|YP_002465474.1| - 0.00016 21.7 0.0 0.00025 21.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|219851042|ref|YP_002465474.1| - 0.001 19.0 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|219851042|ref|YP_002465474.1| - 0.0022 18.1 0.0 0.0033 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|219851042|ref|YP_002465474.1| - 0.0066 16.3 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|219851042|ref|YP_002465474.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HxlR PF01638.17 gi|219851042|ref|YP_002465474.1| - 0.049 13.5 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HicB_lk_antitox PF15919.5 gi|219851044|ref|YP_002465476.1| - 1.2e-14 54.5 0.0 1.3e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Jag_N PF14804.6 gi|219851044|ref|YP_002465476.1| - 0.12 12.7 0.1 0.19 12.1 0.1 1.3 1 0 0 1 1 1 0 Jag N-terminus DUF4369 PF14289.6 gi|219851046|ref|YP_002465478.1| - 0.033 14.7 1.0 0.073 13.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4369) Big_2 PF02368.18 gi|219851046|ref|YP_002465478.1| - 0.78 9.7 8.3 3.9 7.4 0.5 3.3 3 1 1 4 4 4 0 Bacterial Ig-like domain (group 2) HicB_lk_antitox PF15919.5 gi|219851047|ref|YP_002465479.1| - 2.9e-07 30.7 0.0 3.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system YdjM PF04307.14 gi|219851049|ref|YP_002465481.1| - 6.5e-11 41.8 5.3 8.2e-11 41.5 5.3 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MadM PF03818.13 gi|219851049|ref|YP_002465481.1| - 0.037 13.9 8.1 0.53 10.2 0.5 3.2 3 0 0 3 3 3 0 Malonate/sodium symporter MadM subunit DUF4153 PF13687.6 gi|219851050|ref|YP_002465482.1| - 0.0025 17.5 5.4 0.0025 17.5 5.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4153) DUF423 PF04241.15 gi|219851050|ref|YP_002465482.1| - 0.1 12.8 0.5 0.15 12.3 0.2 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF423) DAGK_prokar PF01219.19 gi|219851050|ref|YP_002465482.1| - 0.89 9.4 10.7 0.31 10.9 7.0 1.8 1 1 1 2 2 2 0 Prokaryotic diacylglycerol kinase DUF4129 PF13559.6 gi|219851051|ref|YP_002465483.1| - 4.4e-11 42.9 1.8 1.2e-10 41.4 1.8 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.6 gi|219851051|ref|YP_002465483.1| - 2.4e-07 30.9 7.9 0.00045 20.4 0.5 3.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|219851051|ref|YP_002465483.1| - 0.0011 19.1 11.1 0.0036 17.4 2.3 3.1 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) Big_1 PF02369.16 gi|219851051|ref|YP_002465483.1| - 0.0015 18.5 1.7 0.0015 18.5 1.7 2.5 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) Big_7 PF17957.1 gi|219851051|ref|YP_002465483.1| - 0.002 18.9 0.5 0.13 13.0 0.3 2.7 2 0 0 2 2 2 1 Bacterial Ig domain CarbopepD_reg_2 PF13715.6 gi|219851051|ref|YP_002465483.1| - 0.0026 17.7 3.4 1.2 9.2 0.1 3.5 3 0 0 3 3 3 1 CarboxypepD_reg-like domain DUF1416 PF07210.12 gi|219851051|ref|YP_002465483.1| - 0.0087 15.9 1.3 0.59 10.0 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF1416) SpaA PF17802.1 gi|219851051|ref|YP_002465483.1| - 0.056 13.8 1.0 0.79 10.1 1.0 2.5 1 1 0 1 1 1 0 Prealbumin-like fold domain Invasin_D3 PF09134.10 gi|219851051|ref|YP_002465483.1| - 0.1 12.9 2.1 0.16 12.3 0.5 2.1 2 0 0 2 2 2 0 Invasin, domain 3 DUF4129 PF13559.6 gi|219851052|ref|YP_002465484.1| - 1.1e-05 25.5 0.2 2.3e-05 24.5 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.6 gi|219851052|ref|YP_002465484.1| - 9.6e-05 22.6 4.6 9.8e-05 22.6 0.2 2.8 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|219851052|ref|YP_002465484.1| - 0.0098 15.9 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 1 CarboxypepD_reg-like domain DUF4350 PF14258.6 gi|219851053|ref|YP_002465485.1| - 1.5e-13 50.9 0.2 5.8e-13 49.1 0.2 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) AAA_3 PF07726.11 gi|219851054|ref|YP_002465486.1| - 3.4e-50 169.3 0.1 5.5e-50 168.6 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|219851054|ref|YP_002465486.1| - 1.1e-22 79.6 0.5 2.1e-22 78.7 0.5 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|219851054|ref|YP_002465486.1| - 4.9e-13 49.2 0.0 1.2e-12 48.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|219851054|ref|YP_002465486.1| - 2.6e-07 30.5 0.7 6.3e-07 29.3 0.1 2.0 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|219851054|ref|YP_002465486.1| - 5.9e-06 26.7 0.1 1.5e-05 25.4 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|219851054|ref|YP_002465486.1| - 6.9e-05 22.0 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|219851054|ref|YP_002465486.1| - 0.0038 16.9 0.0 0.16 11.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|219851054|ref|YP_002465486.1| - 0.12 12.1 0.4 0.48 10.1 0.4 2.0 1 1 0 1 1 1 0 AAA domain DUF58 PF01882.18 gi|219851055|ref|YP_002465487.1| - 2.8e-09 37.1 0.0 5.8e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 LtrA PF06772.11 gi|219851057|ref|YP_002465489.1| - 0.18 11.0 3.9 0.25 10.5 3.9 1.1 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) SLATT_fungal PF18142.1 gi|219851057|ref|YP_002465489.1| - 2.6 8.1 4.8 4.2 7.4 4.8 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain DUF1616 PF07760.11 gi|219851058|ref|YP_002465490.1| - 8.8e-107 356.8 2.3 1e-106 356.6 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Pik1 PF11522.8 gi|219851058|ref|YP_002465490.1| - 0.14 12.1 0.2 0.84 9.6 0.0 2.2 1 1 1 2 2 2 0 Yeast phosphatidylinositol-4-OH kinase Pik1 GATase_7 PF13537.6 gi|219851059|ref|YP_002465491.1| - 1.6e-20 73.2 0.0 2.7e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|219851059|ref|YP_002465491.1| - 1.8e-18 67.0 0.0 3.2e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|219851059|ref|YP_002465491.1| - 8.1e-07 28.2 0.0 1.3e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|219851059|ref|YP_002465491.1| - 4.9e-05 22.9 0.0 9.2e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Ribosomal_L37e PF01907.19 gi|219851060|ref|YP_002465492.1| - 1.3e-23 82.9 12.1 1.4e-23 82.8 12.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-piccolo PF05715.13 gi|219851060|ref|YP_002465492.1| - 0.006 16.7 1.1 0.016 15.3 1.1 1.7 1 1 0 1 1 1 1 Piccolo Zn-finger DZR PF12773.7 gi|219851060|ref|YP_002465492.1| - 0.011 15.8 1.4 0.014 15.4 1.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|219851060|ref|YP_002465492.1| - 0.015 15.6 4.6 0.015 15.6 4.6 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family FYVE_2 PF02318.16 gi|219851060|ref|YP_002465492.1| - 0.015 15.5 2.3 0.017 15.3 2.3 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger DUF35_N PF12172.8 gi|219851060|ref|YP_002465492.1| - 0.048 13.6 5.2 0.073 13.0 5.2 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zn-ribbon_14 PF16503.5 gi|219851060|ref|YP_002465492.1| - 0.082 12.4 5.7 0.28 10.7 5.7 1.8 1 1 0 1 1 1 0 Zinc-ribbon zf-ribbon_3 PF13248.6 gi|219851060|ref|YP_002465492.1| - 0.43 10.1 3.5 1.7 8.2 3.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|219851060|ref|YP_002465492.1| - 0.46 10.4 6.3 2.7 8.0 0.6 2.3 1 1 1 2 2 2 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|219851060|ref|YP_002465492.1| - 0.56 10.0 4.6 3.6 7.4 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|219851060|ref|YP_002465492.1| - 0.56 10.1 2.7 0.73 9.8 0.1 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit MraY_sig1 PF10555.9 gi|219851060|ref|YP_002465492.1| - 0.78 9.4 4.0 0.4 10.3 1.3 1.8 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LSM PF01423.22 gi|219851061|ref|YP_002465493.1| - 6.8e-21 73.7 0.2 8e-21 73.5 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|219851061|ref|YP_002465493.1| - 0.00041 20.4 0.0 0.00052 20.1 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.20 gi|219851062|ref|YP_002465494.1| - 4.9e-18 64.9 1.2 7.4e-18 64.3 1.2 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|219851062|ref|YP_002465494.1| - 1.6e-08 34.7 0.0 2.5e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|219851062|ref|YP_002465494.1| - 0.00016 21.9 0.0 0.00026 21.2 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|219851062|ref|YP_002465494.1| - 0.0011 19.6 0.0 0.0023 18.6 0.0 1.6 1 1 0 1 1 1 1 Pre-PUA-like domain SepF PF04472.12 gi|219851063|ref|YP_002465495.1| - 6.6e-15 55.1 1.5 9e-15 54.7 1.5 1.2 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|219851063|ref|YP_002465495.1| - 0.027 14.1 0.0 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 Putative transposase, YhgA-like DUF4822 PF16103.5 gi|219851063|ref|YP_002465495.1| - 0.16 12.2 0.1 0.2 11.9 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4822) zf-ZPR1 PF03367.13 gi|219851064|ref|YP_002465496.1| - 6.9e-37 126.8 0.0 8e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF2321 PF10083.9 gi|219851064|ref|YP_002465496.1| - 0.042 13.5 0.1 0.056 13.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) UPF0547 PF10571.9 gi|219851064|ref|YP_002465496.1| - 7.3 6.8 7.7 3.4 7.8 0.2 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 AIRS_C PF02769.22 gi|219851065|ref|YP_002465497.1| - 3.5e-22 79.2 0.0 5.4e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|219851065|ref|YP_002465497.1| - 1.9e-13 50.8 0.7 3.9e-13 49.9 0.7 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.28 gi|219851066|ref|YP_002465498.1| - 4.5e-50 170.5 0.1 8.1e-50 169.7 0.1 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|219851066|ref|YP_002465498.1| - 4.1e-21 74.5 1.6 1.3e-10 40.9 0.3 3.2 4 0 0 4 4 4 2 ACT domain ACT PF01842.25 gi|219851066|ref|YP_002465498.1| - 1.4e-18 66.3 0.9 2.3e-09 36.9 0.2 2.9 2 0 0 2 2 2 2 ACT domain DUF2007 PF09413.10 gi|219851066|ref|YP_002465498.1| - 0.016 15.3 0.4 3.1 8.0 0.0 3.9 4 0 0 4 4 4 0 Putative prokaryotic signal transducing protein ACT_6 PF13740.6 gi|219851066|ref|YP_002465498.1| - 0.038 14.0 0.2 0.4 10.7 0.1 2.4 2 0 0 2 2 2 0 ACT domain Nuc_rec_co-act PF08815.10 gi|219851066|ref|YP_002465498.1| - 0.055 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Nuclear receptor coactivator FAD_binding_2 PF00890.24 gi|219851067|ref|YP_002465499.1| - 9.6e-89 298.3 4.9 1.3e-88 297.9 4.9 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|219851067|ref|YP_002465499.1| - 1.9e-16 60.2 0.0 5e-16 58.9 0.0 1.7 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|219851067|ref|YP_002465499.1| - 5.5e-08 32.4 0.1 5.1e-05 22.6 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|219851067|ref|YP_002465499.1| - 7.6e-06 24.9 1.6 0.053 12.2 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|219851067|ref|YP_002465499.1| - 8.6e-06 25.4 2.7 1.8e-05 24.3 2.4 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|219851067|ref|YP_002465499.1| - 0.0041 16.2 3.4 0.082 12.0 1.4 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|219851067|ref|YP_002465499.1| - 0.026 13.8 1.6 2 7.6 0.8 2.2 2 0 0 2 2 2 0 FAD binding domain DAO PF01266.24 gi|219851067|ref|YP_002465499.1| - 0.047 13.3 5.4 0.6 9.6 3.5 2.7 1 1 0 2 2 2 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|219851067|ref|YP_002465499.1| - 0.11 11.8 3.3 3.8 6.7 0.2 3.1 3 0 0 3 3 3 0 Thi4 family CCG PF02754.16 gi|219851068|ref|YP_002465500.1| - 1.5e-31 108.5 6.7 3.8e-15 55.9 0.1 3.2 3 0 0 3 3 2 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|219851068|ref|YP_002465500.1| - 4e-25 87.9 0.0 1e-24 86.6 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|219851068|ref|YP_002465500.1| - 1.7e-09 38.0 7.1 1.7e-09 38.0 7.1 2.8 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851068|ref|YP_002465500.1| - 1.4e-07 31.5 9.6 1.4e-07 31.5 9.6 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219851068|ref|YP_002465500.1| - 7.8e-07 29.6 18.1 4e-06 27.3 9.7 3.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851068|ref|YP_002465500.1| - 4.5e-06 27.1 7.7 4.5e-06 27.1 7.7 3.8 5 0 0 5 5 4 1 4Fe-4S dicluster domain Fer2_4 PF13510.6 gi|219851068|ref|YP_002465500.1| - 9.4e-06 25.6 0.2 3.5e-05 23.8 0.2 2.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.6 gi|219851068|ref|YP_002465500.1| - 4.8e-05 23.4 12.7 4.8e-05 23.4 12.7 3.8 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219851068|ref|YP_002465500.1| - 0.00039 21.1 3.6 0.46 11.2 0.1 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer2 PF00111.27 gi|219851068|ref|YP_002465500.1| - 0.00094 19.1 0.5 0.00094 19.1 0.5 2.3 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|219851068|ref|YP_002465500.1| - 0.001 18.8 27.0 0.0029 17.4 3.3 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219851068|ref|YP_002465500.1| - 0.0047 17.3 0.7 0.0047 17.3 0.7 4.9 5 0 0 5 5 4 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851068|ref|YP_002465500.1| - 0.0079 16.2 2.8 0.0079 16.2 2.8 4.0 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219851068|ref|YP_002465500.1| - 0.014 15.5 3.6 0.014 15.5 3.6 4.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219851068|ref|YP_002465500.1| - 0.016 16.1 11.9 0.016 16.1 11.9 2.9 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|219851068|ref|YP_002465500.1| - 0.044 14.0 12.0 0.14 12.4 0.4 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851068|ref|YP_002465500.1| - 0.53 10.5 24.3 0.048 13.8 1.6 4.3 5 1 0 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219851068|ref|YP_002465500.1| - 3.4 8.3 24.6 0.26 11.8 3.0 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Lipase_GDSL_2 PF13472.6 gi|219851069|ref|YP_002465501.1| - 6.8e-19 68.9 0.5 1.6e-18 67.7 0.5 1.6 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family CBM_6 PF03422.15 gi|219851069|ref|YP_002465501.1| - 3e-18 66.3 9.2 4.1e-18 65.9 7.6 2.1 2 1 0 2 2 1 1 Carbohydrate binding module (family 6) Lipase_GDSL PF00657.22 gi|219851069|ref|YP_002465501.1| - 2.8e-11 43.8 0.0 4.3e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF5010_C PF18099.1 gi|219851069|ref|YP_002465501.1| - 1.9e-08 34.4 0.5 1.2e-07 31.9 0.3 2.1 2 0 0 2 2 2 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219851069|ref|YP_002465501.1| - 2.8e-07 30.8 1.1 4.6e-07 30.1 1.1 1.3 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) Big_3_5 PF16640.5 gi|219851069|ref|YP_002465501.1| - 1.2e-05 25.4 10.6 1.6e-05 25.0 9.0 2.0 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) EF-hand_6 PF13405.6 gi|219851069|ref|YP_002465501.1| - 0.00014 21.5 2.4 0.035 14.0 0.1 3.1 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219851069|ref|YP_002465501.1| - 0.0065 15.9 9.0 0.023 14.2 0.3 3.0 3 0 0 3 3 3 2 EF hand CBM60 PF16841.5 gi|219851069|ref|YP_002465501.1| - 0.0094 16.4 0.3 0.038 14.4 0.3 2.0 1 1 1 2 2 2 1 Ca-dependent carbohydrate-binding module xylan-binding DUF5114 PF17141.4 gi|219851069|ref|YP_002465501.1| - 0.2 12.2 4.3 0.37 11.4 0.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5114) Big_7 PF17957.1 gi|219851069|ref|YP_002465501.1| - 0.78 10.6 7.6 0.58 11.0 2.1 2.6 1 1 1 2 2 2 0 Bacterial Ig domain EF-hand_8 PF13833.6 gi|219851069|ref|YP_002465501.1| - 0.9 9.4 7.1 1 9.2 0.4 2.8 3 0 0 3 3 3 0 EF-hand domain pair NosD PF05048.13 gi|219851070|ref|YP_002465502.1| - 3e-29 102.0 7.3 3e-29 102.0 7.3 1.6 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Lipase_GDSL_2 PF13472.6 gi|219851070|ref|YP_002465502.1| - 8.5e-22 78.4 1.0 1.8e-21 77.3 1.0 1.5 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family CBM_6 PF03422.15 gi|219851070|ref|YP_002465502.1| - 6.7e-19 68.4 2.7 2.8e-18 66.4 2.7 2.2 1 1 0 1 1 1 1 Carbohydrate binding module (family 6) Lipase_GDSL PF00657.22 gi|219851070|ref|YP_002465502.1| - 6.3e-15 55.7 0.0 1e-14 55.0 0.0 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Beta_helix PF13229.6 gi|219851070|ref|YP_002465502.1| - 6.9e-10 39.0 12.9 1.1e-09 38.3 12.4 1.5 1 1 0 1 1 1 1 Right handed beta helix region DUF5010_C PF18099.1 gi|219851070|ref|YP_002465502.1| - 2.9e-08 33.8 0.1 5.7e-08 32.9 0.1 1.5 1 0 0 1 1 1 1 DUF5010 C-terminal domain Dockerin_1 PF00404.18 gi|219851070|ref|YP_002465502.1| - 3.6e-06 27.1 0.2 1.1e-05 25.5 0.2 1.9 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219851070|ref|YP_002465502.1| - 0.00026 20.7 0.7 0.38 10.8 0.1 3.1 2 0 0 2 2 2 2 EF-hand domain CBM_35 PF16990.5 gi|219851070|ref|YP_002465502.1| - 0.00034 20.8 1.7 0.00035 20.8 0.1 1.8 2 0 0 2 2 1 1 Carbohydrate binding module (family 35) OSK PF17182.4 gi|219851070|ref|YP_002465502.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 OSK domain EF-hand_1 PF00036.32 gi|219851070|ref|YP_002465502.1| - 0.16 11.6 0.1 0.16 11.6 0.1 3.5 4 0 0 4 4 4 0 EF hand EF-hand_8 PF13833.6 gi|219851070|ref|YP_002465502.1| - 0.19 11.6 3.4 1.1 9.2 0.1 2.6 2 0 0 2 2 2 0 EF-hand domain pair ORC6 PF05460.13 gi|219851070|ref|YP_002465502.1| - 0.66 9.2 2.8 1.1 8.5 2.8 1.2 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) Pyr_redox_2 PF07992.14 gi|219851071|ref|YP_002465503.1| - 5.5e-37 127.6 2.3 8e-37 127.1 2.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|219851071|ref|YP_002465503.1| - 3.2e-25 89.0 0.1 3.9e-19 69.0 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|219851071|ref|YP_002465503.1| - 1.7e-15 57.0 0.3 3.3e-15 56.1 0.3 1.5 1 0 0 1 1 1 1 Glutaredoxin GIDA PF01134.22 gi|219851071|ref|YP_002465503.1| - 8e-08 31.8 5.6 0.0021 17.2 0.2 4.0 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|219851071|ref|YP_002465503.1| - 2.2e-07 31.3 1.0 6.2e-06 26.7 0.0 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|219851071|ref|YP_002465503.1| - 3.1e-06 26.5 4.4 0.0035 16.4 0.0 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein GST_N_3 PF13417.6 gi|219851071|ref|YP_002465503.1| - 5.3e-06 26.8 0.0 9.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_oxidored PF12831.7 gi|219851071|ref|YP_002465503.1| - 9.5e-06 25.2 6.5 1.1e-05 25.0 0.4 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|219851071|ref|YP_002465503.1| - 8.7e-05 21.4 5.7 0.034 12.9 0.3 3.3 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.17 gi|219851071|ref|YP_002465503.1| - 9.5e-05 21.7 0.9 0.00047 19.5 0.1 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|219851071|ref|YP_002465503.1| - 0.00026 20.2 11.9 0.00041 19.6 0.6 3.9 3 1 1 4 4 4 1 FAD binding domain Thioredoxin_3 PF13192.6 gi|219851071|ref|YP_002465503.1| - 0.00062 19.8 0.1 0.0025 17.8 0.1 2.0 1 0 0 1 1 1 1 Thioredoxin domain GST_N_2 PF13409.6 gi|219851071|ref|YP_002465503.1| - 0.0016 18.7 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_binding_3 PF01494.19 gi|219851071|ref|YP_002465503.1| - 0.0033 16.7 0.9 0.014 14.6 0.4 2.0 2 0 0 2 2 2 1 FAD binding domain FMO-like PF00743.19 gi|219851071|ref|YP_002465503.1| - 0.0058 15.1 0.2 0.011 14.2 0.0 1.4 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 gi|219851071|ref|YP_002465503.1| - 0.012 15.6 5.4 0.25 11.3 0.1 3.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|219851071|ref|YP_002465503.1| - 0.013 15.7 2.0 0.043 14.0 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|219851071|ref|YP_002465503.1| - 0.013 15.9 1.2 0.83 10.1 0.1 3.2 3 1 0 3 3 3 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|219851071|ref|YP_002465503.1| - 0.014 14.7 0.0 1.5 8.1 0.0 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|219851071|ref|YP_002465503.1| - 0.025 14.2 7.9 0.17 11.4 1.3 3.2 2 1 0 3 3 3 0 FAD dependent oxidoreductase Auto_anti-p27 PF06677.12 gi|219851071|ref|YP_002465503.1| - 0.11 12.7 0.3 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF836 PF05768.14 gi|219851071|ref|YP_002465503.1| - 0.13 12.7 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Trp_halogenase PF04820.14 gi|219851071|ref|YP_002465503.1| - 0.14 11.0 2.8 5.9 5.6 0.3 2.2 2 0 0 2 2 2 0 Tryptophan halogenase K_oxygenase PF13434.6 gi|219851071|ref|YP_002465503.1| - 0.15 11.2 0.8 0.83 8.7 0.1 2.3 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DSBA PF01323.20 gi|219851071|ref|YP_002465503.1| - 0.18 11.5 2.9 5.9 6.6 0.3 2.7 2 1 1 3 3 3 0 DSBA-like thioredoxin domain Staph_opine_DH PF10100.9 gi|219851071|ref|YP_002465503.1| - 0.19 10.4 0.2 2.5 6.7 0.1 2.1 2 0 0 2 2 2 0 Staphylopine dehydrogenase DUF835 PF05763.12 gi|219851072|ref|YP_002465504.1| - 0.0015 18.2 0.2 0.0032 17.2 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF835) ATPase PF06745.13 gi|219851072|ref|YP_002465504.1| - 0.015 14.7 0.0 0.019 14.3 0.0 1.1 1 0 0 1 1 1 0 KaiC TRAM_LAG1_CLN8 PF03798.16 gi|219851072|ref|YP_002465504.1| - 0.059 13.1 0.2 0.1 12.3 0.2 1.3 1 0 0 1 1 1 0 TLC domain Elong_Iki1 PF10483.9 gi|219851072|ref|YP_002465504.1| - 0.074 12.6 0.0 0.098 12.1 0.0 1.3 1 0 0 1 1 1 0 Elongator subunit Iki1 ELP6 PF09807.9 gi|219851072|ref|YP_002465504.1| - 0.083 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Elongation complex protein 6 PAS_9 PF13426.7 gi|219851073|ref|YP_002465505.1| - 7.5e-33 112.9 0.0 8e-17 61.4 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219851073|ref|YP_002465505.1| - 5.9e-28 97.1 0.3 2.9e-15 56.3 0.0 2.4 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|219851073|ref|YP_002465505.1| - 6.5e-27 94.0 0.2 3.2e-13 49.9 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|219851073|ref|YP_002465505.1| - 1.4e-12 47.7 0.0 7e-10 39.1 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.6 gi|219851073|ref|YP_002465505.1| - 3e-10 40.6 0.0 0.00091 19.8 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|219851073|ref|YP_002465505.1| - 7.7e-10 38.6 0.0 0.0018 18.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.6 gi|219851073|ref|YP_002465505.1| - 0.00012 22.2 0.0 0.0013 18.8 0.0 2.4 2 1 1 3 3 3 1 PAS domain sCache_3_3 PF17202.4 gi|219851073|ref|YP_002465505.1| - 0.0035 17.7 0.0 0.12 12.8 0.0 2.8 3 0 0 3 3 3 1 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|219851073|ref|YP_002465505.1| - 0.032 13.5 0.0 0.081 12.2 0.0 1.6 2 0 0 2 2 2 0 Cache 3/Cache 2 fusion domain Smac_DIABLO PF09057.10 gi|219851073|ref|YP_002465505.1| - 0.099 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Second Mitochondria-derived Activator of Caspases GatB_Yqey PF02637.18 gi|219851073|ref|YP_002465505.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 GatB domain DNA_pol_E_B PF04042.16 gi|219851074|ref|YP_002465506.1| - 5.8e-15 55.2 0.0 8.8e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|219851074|ref|YP_002465506.1| - 1.3e-13 51.9 0.0 2.1e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|219851074|ref|YP_002465506.1| - 3.8e-11 43.4 0.0 1.1e-10 41.9 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|219851074|ref|YP_002465506.1| - 5.7e-05 23.0 0.0 0.00018 21.4 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Peptidase_S24 PF00717.23 gi|219851075|ref|YP_002465507.1| - 8.9e-06 25.6 0.0 1.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like Radical_SAM PF04055.21 gi|219851076|ref|YP_002465508.1| - 1.1e-09 38.9 0.1 2e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SinI PF08671.10 gi|219851076|ref|YP_002465508.1| - 0.067 13.0 0.7 2.3 8.1 0.3 2.8 2 0 0 2 2 2 0 Anti-repressor SinI P53_tetramer PF07710.11 gi|219851076|ref|YP_002465508.1| - 0.11 11.9 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 P53 tetramerisation motif DUF1805 PF08827.11 gi|219851077|ref|YP_002465509.1| - 4.2e-24 84.7 0.0 6e-24 84.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) TcpF PF06340.11 gi|219851077|ref|YP_002465509.1| - 0.088 11.7 0.0 0.098 11.5 0.0 1.1 1 0 0 1 1 1 0 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F FMN_red PF03358.15 gi|219851078|ref|YP_002465510.1| - 5e-23 81.5 0.0 6.5e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219851078|ref|YP_002465510.1| - 5.1e-05 23.1 0.0 6e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Glyoxal_oxid_N PF07250.11 gi|219851078|ref|YP_002465510.1| - 0.028 13.6 0.0 0.038 13.2 0.0 1.1 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus DUF123 PF01986.16 gi|219851079|ref|YP_002465511.1| - 2.7e-27 95.1 0.0 3.2e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.27 gi|219851080|ref|YP_002465512.1| - 2.7e-20 73.2 1.1 4.1e-20 72.6 1.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219851080|ref|YP_002465512.1| - 2e-05 24.2 0.6 2.7e-05 23.8 0.6 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|219851080|ref|YP_002465512.1| - 0.0016 18.0 0.0 0.013 15.0 0.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|219851080|ref|YP_002465512.1| - 0.081 12.9 0.1 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain ThiC_Rad_SAM PF01964.18 gi|219851081|ref|YP_002465513.1| - 5.2e-156 519.6 0.1 5.8e-156 519.5 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family THEG PF14912.6 gi|219851081|ref|YP_002465513.1| - 0.2 12.1 0.1 0.71 10.4 0.1 1.9 2 0 0 2 2 2 0 Testicular haploid expressed repeat AIRC PF00731.20 gi|219851082|ref|YP_002465514.1| - 1.6e-47 160.8 0.9 1.9e-47 160.5 0.9 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|219851082|ref|YP_002465514.1| - 0.071 12.8 0.0 0.08 12.6 0.0 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Phage_min_cap2 PF06152.11 gi|219851082|ref|YP_002465514.1| - 0.1 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 Dehydratase_MU PF02288.15 gi|219851082|ref|YP_002465514.1| - 0.11 12.3 0.1 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Dehydratase medium subunit Aminotran_5 PF00266.19 gi|219851083|ref|YP_002465515.1| - 8e-33 113.9 0.0 9.7e-33 113.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DMRL_synthase PF00885.19 gi|219851084|ref|YP_002465516.1| - 6.6e-17 61.7 0.3 7.3e-17 61.5 0.3 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|219851085|ref|YP_002465517.1| - 1.8e-33 115.4 0.7 1.9e-33 115.2 0.7 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|219851086|ref|YP_002465518.1| - 7.1e-69 232.7 0.0 8.1e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219851086|ref|YP_002465518.1| - 0.051 12.9 0.0 0.071 12.4 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family NHL PF01436.21 gi|219851088|ref|YP_002465520.1| - 7.3e-123 394.9 31.7 6.2e-10 38.6 0.1 12.5 12 0 0 12 12 12 12 NHL repeat SGL PF08450.12 gi|219851088|ref|YP_002465520.1| - 5e-48 163.8 21.9 0.00018 21.2 0.1 12.1 2 2 8 12 12 12 12 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219851088|ref|YP_002465520.1| - 2e-46 155.7 60.9 0.0018 18.3 1.0 12.8 12 0 0 12 12 12 12 Beta-propeller repeat DUF5128 PF17170.4 gi|219851088|ref|YP_002465520.1| - 7.1e-24 84.6 6.1 0.0011 18.2 0.0 7.5 2 2 4 8 8 8 8 6-bladed beta-propeller Phytase-like PF13449.6 gi|219851088|ref|YP_002465520.1| - 1e-17 65.1 8.0 0.0017 18.4 0.2 9.9 3 2 2 7 7 7 2 Esterase-like activity of phytase DUF839 PF05787.13 gi|219851088|ref|YP_002465520.1| - 1.6e-15 57.3 17.5 0.054 12.7 0.3 9.8 1 1 8 10 10 10 8 Bacterial protein of unknown function (DUF839) Death_2 PF14786.6 gi|219851088|ref|YP_002465520.1| - 4e-11 43.0 0.0 3.2 7.7 0.0 8.1 4 2 4 8 8 8 1 Tube Death domain US22 PF02393.16 gi|219851088|ref|YP_002465520.1| - 4.2e-11 43.2 3.3 36 4.6 0.0 10.3 5 4 7 12 12 12 0 US22 like SdiA-regulated PF06977.11 gi|219851088|ref|YP_002465520.1| - 3e-10 39.8 9.8 1.8 7.7 0.0 9.7 8 2 2 10 10 10 2 SdiA-regulated GCD14 PF08704.10 gi|219851088|ref|YP_002465520.1| - 1.1e-09 38.4 5.7 0.069 12.8 0.0 4.4 4 0 0 4 4 4 4 tRNA methyltransferase complex GCD14 subunit Reg_prop PF07494.11 gi|219851088|ref|YP_002465520.1| - 9.4e-09 34.5 4.3 1.6e+02 3.0 0.0 11.1 13 0 0 13 13 11 0 Two component regulator propeller SNAP-25 PF00835.19 gi|219851088|ref|YP_002465520.1| - 8.5e-07 29.2 4.4 32 4.9 0.0 8.9 10 0 0 10 10 10 0 SNAP-25 family Dockerin_1 PF00404.18 gi|219851088|ref|YP_002465520.1| - 2.1e-05 24.6 0.4 4.7e-05 23.5 0.4 1.7 1 0 0 1 1 1 1 Dockerin type I domain DUF4934 PF16288.5 gi|219851088|ref|YP_002465520.1| - 2.8e-05 24.0 7.7 1.7 8.6 0.0 5.9 2 2 2 7 7 7 2 Domain of unknown function (DUF4934) Ldl_recept_b PF00058.17 gi|219851088|ref|YP_002465520.1| - 4.2e-05 23.9 0.0 68 4.1 0.0 7.5 8 0 0 8 8 8 0 Low-density lipoprotein receptor repeat class B NSP2_assoc PF14758.6 gi|219851088|ref|YP_002465520.1| - 0.00019 21.8 0.1 63 3.8 0.0 5.0 4 0 0 4 4 4 0 Non-essential region of nsp2 of arterivirus polyprotein EF-hand_6 PF13405.6 gi|219851088|ref|YP_002465520.1| - 0.00023 20.8 2.4 0.077 13.0 0.1 2.9 2 0 0 2 2 2 2 EF-hand domain Ntox33 PF15533.6 gi|219851088|ref|YP_002465520.1| - 0.00032 21.1 9.0 70 4.0 0.0 8.9 10 2 2 12 12 12 0 Bacterial toxin 33 Crystall_2 PF09076.10 gi|219851088|ref|YP_002465520.1| - 0.0018 18.1 4.5 65 3.5 0.1 6.0 4 0 0 4 4 4 0 Beta/Gamma crystallin EF-hand_1 PF00036.32 gi|219851088|ref|YP_002465520.1| - 0.014 14.9 11.7 0.096 12.3 0.3 3.2 3 0 0 3 3 3 0 EF hand EF-hand_8 PF13833.6 gi|219851088|ref|YP_002465520.1| - 0.29 11.0 4.1 1.2 9.0 0.3 2.5 2 0 0 2 2 2 0 EF-hand domain pair Gly-zipper_Omp PF13488.6 gi|219851089|ref|YP_002465521.1| - 0.0026 17.7 17.1 0.0026 17.7 17.1 1.9 2 0 0 2 2 2 1 Glycine zipper DUF533 PF04391.12 gi|219851089|ref|YP_002465521.1| - 0.012 15.2 1.9 0.02 14.5 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF533) TPR_21 PF09976.9 gi|219851089|ref|YP_002465521.1| - 0.46 10.2 4.8 16 5.2 0.1 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat-like domain FmdE PF02663.14 gi|219851090|ref|YP_002465522.1| - 1.6e-38 131.7 0.0 1.9e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|219851090|ref|YP_002465522.1| - 2.3e-05 24.2 3.5 4.6e-05 23.3 3.5 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Cas_DxTHG PF09455.10 gi|219851091|ref|YP_002465523.1| - 2.7e-32 112.7 0.0 3.5e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family C12orf66_like PF09404.10 gi|219851091|ref|YP_002465523.1| - 0.26 10.1 0.0 0.38 9.5 0.0 1.1 1 0 0 1 1 1 0 KICSTOR complex C12orf66 like ABC2_membrane PF01061.24 gi|219851092|ref|YP_002465524.1| - 1.6e-22 79.9 29.7 1.6e-22 79.9 29.7 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219851092|ref|YP_002465524.1| - 6.2e-11 42.0 37.9 6.2e-11 42.0 37.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|219851093|ref|YP_002465525.1| - 1.8e-34 119.2 0.0 5e-34 117.8 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|219851093|ref|YP_002465525.1| - 2.7e-13 50.4 0.6 6.6e-08 32.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219851093|ref|YP_002465525.1| - 8.2e-11 42.5 0.0 2.5e-10 41.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|219851093|ref|YP_002465525.1| - 1.2e-06 28.5 0.0 0.052 13.3 0.0 2.3 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|219851093|ref|YP_002465525.1| - 4e-05 24.2 0.2 7.6e-05 23.3 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219851093|ref|YP_002465525.1| - 0.00012 21.7 0.1 0.00031 20.4 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|219851093|ref|YP_002465525.1| - 0.00021 20.8 0.0 0.0026 17.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|219851093|ref|YP_002465525.1| - 0.00035 20.5 0.0 0.00087 19.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|219851093|ref|YP_002465525.1| - 0.0024 18.3 0.0 0.0043 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|219851093|ref|YP_002465525.1| - 0.0093 15.6 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|219851093|ref|YP_002465525.1| - 0.028 14.2 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|219851093|ref|YP_002465525.1| - 0.037 13.9 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain SbcCD_C PF13558.6 gi|219851093|ref|YP_002465525.1| - 0.041 14.1 0.0 0.15 12.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|219851093|ref|YP_002465525.1| - 0.12 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|219851093|ref|YP_002465525.1| - 0.24 11.5 2.3 0.49 10.5 0.4 2.4 2 2 0 2 2 2 0 50S ribosome-binding GTPase CofC PF01983.16 gi|219851094|ref|YP_002465526.1| - 1.4e-42 145.3 0.0 1.8e-42 144.9 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|219851094|ref|YP_002465526.1| - 7.5e-05 23.1 0.2 0.0001 22.7 0.2 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF5050 PF16472.5 gi|219851095|ref|YP_002465527.1| - 1.1e-06 28.1 3.1 0.0074 15.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF5050) Pectate_lyase22 PF14583.6 gi|219851095|ref|YP_002465527.1| - 1.8e-05 23.6 0.4 1.6 7.3 0.0 3.2 2 1 0 3 3 3 3 Oligogalacturonate lyase DPPIV_N PF00930.21 gi|219851095|ref|YP_002465527.1| - 2.8e-05 23.0 6.2 0.34 9.6 0.4 3.4 2 1 1 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Dockerin_1 PF00404.18 gi|219851095|ref|YP_002465527.1| - 0.00054 20.1 0.6 0.0013 18.9 0.6 1.7 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219851095|ref|YP_002465527.1| - 0.0013 18.5 2.7 0.24 11.4 0.5 2.6 2 0 0 2 2 2 2 EF-hand domain PQQ_2 PF13360.6 gi|219851095|ref|YP_002465527.1| - 0.0078 15.8 3.4 0.22 11.1 0.9 2.9 1 1 0 2 2 2 1 PQQ-like domain Kelch_3 PF13415.6 gi|219851095|ref|YP_002465527.1| - 0.057 13.7 0.5 0.62 10.4 0.3 2.7 2 0 0 2 2 2 0 Galactose oxidase, central domain MHC_II_alpha PF00993.20 gi|219851095|ref|YP_002465527.1| - 0.083 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Class II histocompatibility antigen, alpha domain EF-hand_1 PF00036.32 gi|219851095|ref|YP_002465527.1| - 0.17 11.5 8.6 0.17 11.5 0.6 2.8 3 0 0 3 3 3 0 EF hand Atu4866 PF11512.8 gi|219851095|ref|YP_002465527.1| - 0.51 10.7 3.5 16 5.9 0.4 3.5 3 1 1 4 4 4 0 Agrobacterium tumefaciens protein Atu4866 EF-hand_8 PF13833.6 gi|219851095|ref|YP_002465527.1| - 1.2 9.0 3.5 5.2 7.0 0.3 2.5 2 0 0 2 2 2 0 EF-hand domain pair CBM_6 PF03422.15 gi|219851096|ref|YP_002465528.1| - 1.6e-28 99.5 4.6 3.6e-19 69.3 0.0 7.0 4 2 1 6 6 6 2 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219851096|ref|YP_002465528.1| - 3.6e-16 59.3 0.1 1.2e-08 35.1 0.0 4.6 6 0 0 6 6 6 2 DUF5010 C-terminal domain PKD PF00801.20 gi|219851096|ref|YP_002465528.1| - 1.5e-07 31.1 11.8 1.1e-05 25.1 0.9 9.1 7 2 2 9 9 9 3 PKD domain CBM_35 PF16990.5 gi|219851096|ref|YP_002465528.1| - 2.3e-05 24.7 0.2 0.00095 19.4 0.0 5.7 7 0 0 7 7 7 2 Carbohydrate binding module (family 35) Y_Y_Y PF07495.13 gi|219851096|ref|YP_002465528.1| - 0.053 13.5 3.9 0.81 9.7 0.2 3.9 4 0 0 4 4 4 0 Y_Y_Y domain CBS PF00571.28 gi|219851097|ref|YP_002465529.1| - 6.4e-18 64.9 0.8 1.9e-08 34.6 0.1 2.1 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.21 gi|219851098|ref|YP_002465530.1| - 7e-56 189.6 51.9 8.7e-56 189.3 51.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2238 PF09997.9 gi|219851098|ref|YP_002465530.1| - 0.002 17.9 0.1 0.0054 16.5 0.1 1.7 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) ORF_12_N PF18042.1 gi|219851099|ref|YP_002465531.1| - 0.05 14.0 0.2 0.17 12.3 0.1 1.9 1 1 1 2 2 2 0 ORF 12 gene product N-terminal PE PF00934.20 gi|219851099|ref|YP_002465531.1| - 1 9.7 11.0 0.12 12.7 1.9 2.5 1 1 0 2 2 2 0 PE family DUF4245 PF14030.6 gi|219851100|ref|YP_002465532.1| - 5.2e-06 26.6 0.0 7e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4245) DUF4245 PF14030.6 gi|219851101|ref|YP_002465533.1| - 0.0024 17.9 1.8 0.0054 16.8 1.8 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4245) KH_2 PF07650.17 gi|219851102|ref|YP_002465534.1| - 1.3e-18 66.6 2.1 1.9e-13 50.0 0.3 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|219851102|ref|YP_002465534.1| - 1.7e-08 34.4 0.5 1.5e-07 31.3 0.0 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|219851102|ref|YP_002465534.1| - 5.2e-07 29.5 0.7 0.0044 16.9 0.2 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|219851102|ref|YP_002465534.1| - 3.7e-05 23.5 0.6 0.0019 18.0 0.0 2.3 2 0 0 2 2 2 1 KH domain PRA-PH PF01503.17 gi|219851103|ref|YP_002465535.1| - 2.3e-14 53.6 0.1 2.7e-14 53.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|219851103|ref|YP_002465535.1| - 3.2e-07 30.4 0.9 4.3e-07 30.0 0.3 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain 2-Hacid_dh_C PF02826.19 gi|219851104|ref|YP_002465536.1| - 2.3e-63 212.7 0.2 3.4e-63 212.2 0.2 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|219851104|ref|YP_002465536.1| - 1.3e-36 125.2 1.1 1.3e-36 125.2 1.1 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|219851104|ref|YP_002465536.1| - 1.4e-08 34.3 0.1 5.6e-08 32.4 0.1 2.1 1 0 0 1 1 1 1 ACT domain IlvN PF07991.12 gi|219851104|ref|YP_002465536.1| - 0.00015 21.3 0.2 0.00038 20.1 0.2 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|219851104|ref|YP_002465536.1| - 0.0037 17.3 0.8 0.011 15.9 0.8 1.7 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|219851104|ref|YP_002465536.1| - 0.0046 17.1 0.8 0.013 15.6 0.8 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|219851104|ref|YP_002465536.1| - 0.034 14.5 0.1 0.11 12.8 0.1 2.0 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|219851104|ref|YP_002465536.1| - 0.11 13.1 0.8 0.27 11.8 0.2 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF308 PF03729.13 gi|219851105|ref|YP_002465537.1| - 2.2e-14 53.5 49.4 1.6e-06 28.4 19.7 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) SLATT_1 PF18181.1 gi|219851105|ref|YP_002465537.1| - 1.4 8.9 5.4 0.7 9.8 2.9 1.8 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Nitroreductase PF00881.24 gi|219851106|ref|YP_002465538.1| - 2e-25 89.8 0.0 2.4e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Ribosomal_L3 PF00297.22 gi|219851107|ref|YP_002465539.1| - 2.4e-91 306.5 0.7 3.6e-91 305.9 0.7 1.3 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|219851108|ref|YP_002465540.1| - 1.1e-41 142.7 0.7 1.2e-41 142.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|219851109|ref|YP_002465541.1| - 4.6e-14 52.5 2.6 2.7e-13 50.1 2.6 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 MatP PF06303.12 gi|219851109|ref|YP_002465541.1| - 0.013 16.1 0.1 0.015 15.8 0.1 1.1 1 0 0 1 1 1 0 MatP N-terminal domain TusA PF01206.17 gi|219851109|ref|YP_002465541.1| - 0.016 15.0 0.1 0.032 14.1 0.1 1.5 1 1 0 1 1 1 0 Sulfurtransferase TusA Pox_polyA_pol_N PF12630.7 gi|219851109|ref|YP_002465541.1| - 0.064 13.6 0.5 0.081 13.3 0.5 1.3 1 1 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain Limkain-b1 PF11608.8 gi|219851109|ref|YP_002465541.1| - 0.066 13.3 0.2 5.6 7.1 0.0 2.0 1 1 1 2 2 2 0 Limkain b1 RRM_1 PF00076.22 gi|219851109|ref|YP_002465541.1| - 0.11 12.3 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Ribosomal_L2_C PF03947.18 gi|219851110|ref|YP_002465542.1| - 5.7e-44 149.4 2.6 1.1e-43 148.5 2.1 1.6 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|219851110|ref|YP_002465542.1| - 8.1e-14 51.4 0.0 2.1e-13 50.0 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|219851111|ref|YP_002465543.1| - 1.5e-22 79.2 0.0 2.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 gi|219851112|ref|YP_002465544.1| - 2.7e-25 88.6 0.1 3.6e-25 88.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|219851113|ref|YP_002465545.1| - 1.4e-21 76.8 1.1 3.6e-21 75.5 1.1 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|219851113|ref|YP_002465545.1| - 2.5e-13 49.6 0.1 7.2e-13 48.2 0.1 1.8 1 1 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|219851113|ref|YP_002465545.1| - 0.02 14.7 1.1 0.1 12.4 0.1 2.5 2 1 1 3 3 3 0 KH domain KH_4 PF13083.6 gi|219851113|ref|YP_002465545.1| - 0.079 12.8 0.1 0.22 11.4 0.1 1.8 1 0 0 1 1 1 0 KH domain Ribosomal_L29 PF00831.23 gi|219851114|ref|YP_002465546.1| - 1.8e-12 47.0 0.6 2e-12 46.8 0.6 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein LEM PF03020.15 gi|219851114|ref|YP_002465546.1| - 0.037 13.6 0.4 0.12 11.9 0.3 1.8 1 1 1 2 2 2 0 LEM domain UPF0086 PF01868.16 gi|219851115|ref|YP_002465547.1| - 3.6e-20 71.7 0.1 4e-20 71.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 AHSA1 PF08327.11 gi|219851115|ref|YP_002465547.1| - 0.065 13.5 0.0 0.085 13.1 0.0 1.1 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Ribosomal_S17 PF00366.20 gi|219851116|ref|YP_002465548.1| - 8.6e-27 93.0 1.5 1.1e-26 92.7 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|219851116|ref|YP_002465548.1| - 0.0027 18.1 0.0 0.0057 17.0 0.0 1.6 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|219851117|ref|YP_002465549.1| - 6.8e-35 119.8 0.4 8.3e-35 119.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|219851118|ref|YP_002465550.1| - 8e-24 83.9 0.0 9.8e-24 83.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|219851118|ref|YP_002465550.1| - 0.00029 20.7 3.7 0.00029 20.7 3.7 1.8 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.20 gi|219851119|ref|YP_002465551.1| - 1.1e-19 70.1 0.0 1.9e-18 66.2 0.0 2.1 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|219851119|ref|YP_002465551.1| - 2.9e-12 46.5 0.7 5.3e-12 45.6 0.7 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|219851119|ref|YP_002465551.1| - 1.9e-05 24.3 0.0 3.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|219851119|ref|YP_002465551.1| - 0.00021 21.1 0.1 0.00045 20.1 0.1 1.7 1 0 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.21 gi|219851120|ref|YP_002465552.1| - 1.1e-25 89.6 0.0 1.6e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|219851120|ref|YP_002465552.1| - 1e-16 61.0 0.2 2e-16 60.1 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 FctA PF12892.7 gi|219851120|ref|YP_002465552.1| - 0.011 16.5 0.0 0.013 16.3 0.0 1.2 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Ribosomal_S14 PF00253.21 gi|219851121|ref|YP_002465553.1| - 2.4e-13 49.6 4.0 2.5e-13 49.6 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Prok-RING_4 PF14447.6 gi|219851121|ref|YP_002465553.1| - 0.023 14.5 1.4 0.11 12.4 1.4 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 DUF1451 PF07295.11 gi|219851121|ref|YP_002465553.1| - 0.024 14.7 0.3 0.027 14.5 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-RING_2 PF13639.6 gi|219851121|ref|YP_002465553.1| - 0.082 13.2 3.5 0.16 12.3 3.5 1.5 1 1 0 1 1 1 0 Ring finger domain zf-C3HC4_3 PF13920.6 gi|219851121|ref|YP_002465553.1| - 0.1 12.5 2.9 0.39 10.6 3.0 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) MRNIP PF15749.5 gi|219851121|ref|YP_002465553.1| - 0.24 12.2 3.7 0.33 11.7 3.7 1.3 1 1 0 1 1 1 0 MRN-interacting protein Ribosomal_S8 PF00410.19 gi|219851122|ref|YP_002465554.1| - 3.2e-24 85.3 0.0 3.8e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|219851123|ref|YP_002465555.1| - 7.2e-29 100.3 2.4 3.4e-16 59.7 0.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HMA PF00403.26 gi|219851123|ref|YP_002465555.1| - 0.058 13.9 0.1 0.15 12.5 0.1 1.7 1 0 0 1 1 1 0 Heavy-metal-associated domain Ribosomal_L32e PF01655.18 gi|219851124|ref|YP_002465556.1| - 4.2e-30 104.3 0.0 5.2e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|219851125|ref|YP_002465557.1| - 8.7e-54 181.5 5.8 1e-53 181.3 5.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|219851126|ref|YP_002465558.1| - 2.5e-39 134.9 1.5 2.2e-26 92.8 0.3 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|219851126|ref|YP_002465558.1| - 3.3e-08 33.9 0.2 5.1e-08 33.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|219851127|ref|YP_002465559.1| - 4.7e-25 86.8 0.1 1.1e-24 85.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|219851127|ref|YP_002465559.1| - 1.9e-23 82.2 3.3 3.3e-23 81.4 3.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Como_LCP PF02247.16 gi|219851127|ref|YP_002465559.1| - 0.056 12.1 0.0 0.093 11.3 0.0 1.3 1 0 0 1 1 1 0 Large coat protein Ribosomal_L30 PF00327.20 gi|219851128|ref|YP_002465560.1| - 1.5e-17 63.2 0.3 1.5e-17 63.2 0.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|219851129|ref|YP_002465561.1| - 8.4e-20 71.7 0.1 1.1e-19 71.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|219851130|ref|YP_002465562.1| - 7.6e-71 238.9 21.5 9.1e-71 238.6 21.5 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|219851130|ref|YP_002465562.1| - 2.1e-11 43.5 0.5 2.1e-11 43.5 0.5 2.7 3 0 0 3 3 3 1 Plug domain of Sec61p AAA_17 PF13207.6 gi|219851131|ref|YP_002465563.1| - 1e-34 119.9 0.1 1.3e-34 119.5 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|219851131|ref|YP_002465563.1| - 2.2e-08 34.7 0.0 5.4e-08 33.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|219851131|ref|YP_002465563.1| - 3.8e-05 23.6 0.3 8.2e-05 22.6 0.1 1.6 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|219851131|ref|YP_002465563.1| - 0.0002 21.8 0.0 0.0003 21.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|219851131|ref|YP_002465563.1| - 0.00088 19.2 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|219851131|ref|YP_002465563.1| - 0.0013 18.9 0.0 0.0025 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|219851131|ref|YP_002465563.1| - 0.0013 17.8 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_19 PF13245.6 gi|219851131|ref|YP_002465563.1| - 0.0016 18.8 0.0 0.0032 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|219851131|ref|YP_002465563.1| - 0.0041 17.4 0.1 0.0059 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|219851131|ref|YP_002465563.1| - 0.0052 16.3 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region NACHT PF05729.12 gi|219851131|ref|YP_002465563.1| - 0.0057 16.6 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 NACHT domain Viral_helicase1 PF01443.18 gi|219851131|ref|YP_002465563.1| - 0.01 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase cobW PF02492.19 gi|219851131|ref|YP_002465563.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|219851131|ref|YP_002465563.1| - 0.015 15.0 0.1 0.034 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|219851131|ref|YP_002465563.1| - 0.021 14.1 0.0 0.029 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|219851131|ref|YP_002465563.1| - 0.021 15.1 0.8 0.05 13.8 0.8 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|219851131|ref|YP_002465563.1| - 0.03 14.7 0.1 0.048 14.1 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|219851131|ref|YP_002465563.1| - 0.038 13.7 0.7 0.14 11.9 0.1 2.1 2 1 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|219851131|ref|YP_002465563.1| - 0.059 12.9 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain KTI12 PF08433.10 gi|219851131|ref|YP_002465563.1| - 0.061 12.8 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.17 gi|219851131|ref|YP_002465563.1| - 0.065 12.9 0.2 0.5 10.0 0.2 2.1 1 1 0 1 1 1 0 Thymidylate kinase DAP3 PF10236.9 gi|219851131|ref|YP_002465563.1| - 0.066 12.4 0.0 0.096 11.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.23 gi|219851131|ref|YP_002465563.1| - 0.084 13.0 0.1 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|219851131|ref|YP_002465563.1| - 0.11 12.5 0.1 0.2 11.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain EMC3_TMCO1 PF01956.16 gi|219851132|ref|YP_002465564.1| - 1.3e-48 165.0 3.3 1.7e-48 164.6 3.3 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like Inj_translocase PF16928.5 gi|219851132|ref|YP_002465564.1| - 0.05 13.1 2.0 0.064 12.7 2.0 1.1 1 0 0 1 1 1 0 DNA/protein translocase of phage P22 injectosome DUF2207 PF09972.9 gi|219851132|ref|YP_002465564.1| - 0.99 8.1 4.1 0.32 9.7 1.1 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) GTA_holin_3TM PF11351.8 gi|219851132|ref|YP_002465564.1| - 2 8.9 6.6 0.52 10.8 3.3 1.7 1 1 1 2 2 2 0 Holin of 3TMs, for gene-transfer release Wzy_C PF04932.15 gi|219851132|ref|YP_002465564.1| - 4.8 6.8 9.1 0.14 11.8 0.7 2.1 1 1 1 2 2 2 0 O-Antigen ligase Cytidylate_kin2 PF13189.6 gi|219851133|ref|YP_002465565.1| - 1.4e-21 77.5 0.2 8.1e-20 71.7 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|219851133|ref|YP_002465565.1| - 9e-12 45.2 0.2 2.7e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|219851133|ref|YP_002465565.1| - 2.8e-10 40.7 0.0 3.5e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|219851133|ref|YP_002465565.1| - 3.5e-10 40.5 0.0 4.5e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|219851133|ref|YP_002465565.1| - 1.7e-06 28.3 0.1 6.7e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|219851133|ref|YP_002465565.1| - 0.0026 17.9 0.1 0.0036 17.4 0.1 1.5 1 1 0 1 1 1 1 Adenylate kinase AAA PF00004.29 gi|219851133|ref|YP_002465565.1| - 0.0052 17.2 0.0 0.0077 16.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|219851133|ref|YP_002465565.1| - 0.03 14.5 0.0 0.035 14.2 0.0 1.3 1 1 0 1 1 1 0 AAA domain E3_binding PF02817.17 gi|219851133|ref|YP_002465565.1| - 0.094 13.1 0.1 5.6 7.4 0.0 3.0 3 0 0 3 3 3 0 e3 binding domain RuvB_N PF05496.12 gi|219851133|ref|YP_002465565.1| - 0.096 12.4 0.1 0.17 11.6 0.1 1.4 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PadR PF03551.14 gi|219851134|ref|YP_002465566.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|219851134|ref|YP_002465566.1| - 0.03 14.4 0.8 0.049 13.7 0.8 1.3 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.17 gi|219851134|ref|YP_002465566.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Nitroreductase PF00881.24 gi|219851135|ref|YP_002465567.1| - 1e-26 94.0 0.1 3.1e-12 46.9 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|219851135|ref|YP_002465567.1| - 1.6e-17 63.8 0.4 5.8e-06 26.0 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase DUF3821 PF12863.7 gi|219851136|ref|YP_002465568.1| - 9.8e-61 205.3 1.9 9.8e-61 205.3 1.9 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3821) Big_1 PF02369.16 gi|219851136|ref|YP_002465568.1| - 0.018 15.0 0.4 0.018 15.0 0.4 3.4 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) DUF5305 PF17231.2 gi|219851136|ref|YP_002465568.1| - 0.16 11.3 5.4 0.27 10.6 5.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Hamartin PF04388.12 gi|219851136|ref|YP_002465568.1| - 0.78 8.3 7.7 1.1 7.8 7.7 1.1 1 0 0 1 1 1 0 Hamartin protein Fer4 PF00037.27 gi|219851137|ref|YP_002465569.1| - 3e-18 64.8 17.6 6.9e-10 38.3 4.7 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851137|ref|YP_002465569.1| - 8.9e-16 57.2 18.2 2.9e-08 33.4 5.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219851137|ref|YP_002465569.1| - 2.5e-14 53.1 26.0 1.1e-09 38.3 14.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851137|ref|YP_002465569.1| - 3.1e-13 48.9 13.8 5.9e-07 29.2 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851137|ref|YP_002465569.1| - 1.1e-11 45.1 26.5 3.6e-09 37.1 14.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851137|ref|YP_002465569.1| - 1.4e-10 41.2 15.4 4.3e-05 23.6 3.8 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851137|ref|YP_002465569.1| - 2e-10 40.7 12.1 3.5e-10 39.9 12.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851137|ref|YP_002465569.1| - 5.7e-09 36.8 12.9 6.9e-05 23.7 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219851137|ref|YP_002465569.1| - 9.2e-09 35.1 14.6 0.0003 21.1 5.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|219851137|ref|YP_002465569.1| - 3.1e-06 27.6 17.1 0.00074 20.0 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|219851137|ref|YP_002465569.1| - 1.4e-05 25.8 8.1 0.021 15.7 1.0 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851137|ref|YP_002465569.1| - 7.8e-05 23.1 14.2 0.016 15.7 2.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851137|ref|YP_002465569.1| - 0.0001 22.7 14.5 0.012 16.0 3.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219851137|ref|YP_002465569.1| - 0.00011 22.9 17.1 0.017 15.8 5.1 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|219851137|ref|YP_002465569.1| - 0.00015 22.4 18.9 0.012 16.5 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219851137|ref|YP_002465569.1| - 0.001 19.2 14.8 0.018 15.2 4.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain DapB_C PF05173.14 gi|219851138|ref|YP_002465570.1| - 1.4e-36 125.2 0.0 2.3e-36 124.5 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|219851138|ref|YP_002465570.1| - 1.4e-25 89.8 2.7 2.3e-25 89.1 2.7 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.17 gi|219851138|ref|YP_002465570.1| - 0.08 12.0 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain RSN1_7TM PF02714.15 gi|219851138|ref|YP_002465570.1| - 0.22 10.8 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 Calcium-dependent channel, 7TM region, putative phosphate DapB_C PF05173.14 gi|219851140|ref|YP_002465572.1| - 2.2e-38 131.0 0.0 3.5e-38 130.3 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|219851140|ref|YP_002465572.1| - 1.3e-26 93.2 2.9 2e-26 92.6 2.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Peptidase_S41 PF03572.18 gi|219851140|ref|YP_002465572.1| - 0.039 13.5 0.1 0.06 12.9 0.1 1.3 1 0 0 1 1 1 0 Peptidase family S41 DUF2277 PF10041.9 gi|219851140|ref|YP_002465572.1| - 0.04 14.3 0.2 0.098 13.0 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) Epimerase PF01370.21 gi|219851140|ref|YP_002465572.1| - 0.044 13.2 0.2 0.067 12.6 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|219851140|ref|YP_002465572.1| - 0.05 12.7 0.1 0.079 12.1 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain RSN1_7TM PF02714.15 gi|219851140|ref|YP_002465572.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 1 0 1 1 1 0 Calcium-dependent channel, 7TM region, putative phosphate DHDPS PF00701.22 gi|219851141|ref|YP_002465573.1| - 3.9e-94 314.6 0.0 4.3e-94 314.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family RraA-like PF03737.15 gi|219851141|ref|YP_002465573.1| - 0.064 13.4 0.3 0.88 9.7 0.1 2.3 1 1 0 2 2 2 0 Aldolase/RraA Ribosomal_S17e PF00833.18 gi|219851142|ref|YP_002465574.1| - 1e-11 44.8 0.0 1e-11 44.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 ThiP_synth PF10120.9 gi|219851143|ref|YP_002465575.1| - 5.3e-17 61.9 0.0 2.1e-16 60.0 0.0 1.8 1 1 0 1 1 1 1 Thiamine-phosphate synthase PhoU PF01895.19 gi|219851144|ref|YP_002465576.1| - 2.3e-24 85.7 9.3 1.9e-20 73.1 2.6 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|219851144|ref|YP_002465576.1| - 1.2e-06 28.3 0.1 4.2e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin RNA_lig_T4_1 PF09511.10 gi|219851144|ref|YP_002465576.1| - 0.018 14.9 0.1 0.3 10.9 0.1 2.3 1 1 0 1 1 1 0 RNA ligase PBP_like_2 PF12849.7 gi|219851145|ref|YP_002465577.1| - 5e-45 154.4 13.5 1.3e-44 153.0 13.5 1.8 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|219851145|ref|YP_002465577.1| - 2.8e-17 62.5 1.1 4.9e-17 61.7 1.1 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|219851145|ref|YP_002465577.1| - 1e-12 48.3 0.8 1e-12 48.3 0.8 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|219851145|ref|YP_002465577.1| - 0.00054 20.0 3.1 0.0058 16.6 3.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1180 PF06679.12 gi|219851145|ref|YP_002465577.1| - 1.6 9.1 8.1 0.26 11.7 4.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) BPD_transp_1 PF00528.22 gi|219851146|ref|YP_002465578.1| - 2.2e-46 157.9 33.2 1.5e-25 90.1 12.0 4.6 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ACT_6 PF13740.6 gi|219851146|ref|YP_002465578.1| - 0.004 17.1 0.1 4.8 7.2 0.0 2.6 2 0 0 2 2 2 2 ACT domain ABC_tran PF00005.27 gi|219851147|ref|YP_002465579.1| - 3.2e-29 102.2 0.0 4.5e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851147|ref|YP_002465579.1| - 1.7e-12 47.8 0.1 2e-05 24.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219851147|ref|YP_002465579.1| - 1.1e-08 34.8 0.0 5.6e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|219851147|ref|YP_002465579.1| - 4.4e-05 23.9 0.1 0.0002 21.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|219851147|ref|YP_002465579.1| - 0.00017 21.4 0.3 0.0062 16.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|219851147|ref|YP_002465579.1| - 0.00024 20.8 0.0 0.00047 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|219851147|ref|YP_002465579.1| - 0.00024 21.4 0.0 0.00048 20.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|219851147|ref|YP_002465579.1| - 0.00078 19.4 0.1 0.0025 17.7 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|219851147|ref|YP_002465579.1| - 0.0017 18.9 0.6 0.0035 17.9 0.1 1.7 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|219851147|ref|YP_002465579.1| - 0.012 15.4 0.1 0.29 10.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|219851147|ref|YP_002465579.1| - 0.012 15.5 0.1 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|219851147|ref|YP_002465579.1| - 0.023 13.5 0.1 1.3 7.7 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|219851147|ref|YP_002465579.1| - 0.033 13.9 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|219851147|ref|YP_002465579.1| - 0.035 13.7 0.1 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|219851147|ref|YP_002465579.1| - 0.051 14.0 0.0 1.1 9.6 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) QSOX_Trx1 PF18108.1 gi|219851147|ref|YP_002465579.1| - 0.052 13.7 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 QSOX Trx-like domain Mg_chelatase PF01078.21 gi|219851147|ref|YP_002465579.1| - 0.066 12.6 0.0 0.2 11.0 0.0 1.8 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|219851147|ref|YP_002465579.1| - 0.069 12.3 0.0 0.12 11.5 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|219851147|ref|YP_002465579.1| - 0.07 13.0 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain TniB PF05621.11 gi|219851147|ref|YP_002465579.1| - 0.088 12.2 0.0 0.61 9.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein ATPase_2 PF01637.18 gi|219851147|ref|YP_002465579.1| - 0.1 12.5 0.0 0.78 9.6 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|219851147|ref|YP_002465579.1| - 0.11 12.7 0.0 0.3 11.3 0.0 1.7 3 0 0 3 3 2 0 AAA domain AAA_PrkA PF08298.11 gi|219851147|ref|YP_002465579.1| - 0.13 11.1 0.0 0.28 10.0 0.0 1.4 2 0 0 2 2 2 0 PrkA AAA domain AAA_5 PF07728.14 gi|219851147|ref|YP_002465579.1| - 0.17 11.9 0.0 0.43 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.15 gi|219851147|ref|YP_002465579.1| - 0.19 10.5 0.1 1.2 7.9 0.1 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein IstB_IS21 PF01695.17 gi|219851147|ref|YP_002465579.1| - 0.22 11.2 0.2 2.9 7.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoU PF01895.19 gi|219851148|ref|YP_002465580.1| - 1.2e-37 128.2 6.3 6.1e-19 68.3 2.0 2.1 2 0 0 2 2 2 2 PhoU domain CorA PF01544.18 gi|219851149|ref|YP_002465581.1| - 8e-60 202.6 7.5 1e-59 202.3 7.5 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein FAM167 PF11652.8 gi|219851149|ref|YP_002465581.1| - 0.21 12.1 0.1 0.21 12.1 0.1 2.6 3 1 1 4 4 4 0 FAM167 Methyltransf_31 PF13847.6 gi|219851150|ref|YP_002465582.1| - 5e-25 88.1 0.0 6.7e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851150|ref|YP_002465582.1| - 9.8e-21 74.3 0.0 3e-20 72.7 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851150|ref|YP_002465582.1| - 1.6e-20 73.5 0.0 3.7e-20 72.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851150|ref|YP_002465582.1| - 2.3e-16 60.3 0.0 4.6e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851150|ref|YP_002465582.1| - 1.3e-14 54.1 0.0 3.3e-14 52.8 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|219851150|ref|YP_002465582.1| - 1.7e-09 37.4 0.0 3.2e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|219851150|ref|YP_002465582.1| - 1.9e-09 37.6 0.0 2.6e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|219851150|ref|YP_002465582.1| - 9e-09 35.1 0.0 1.6e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|219851150|ref|YP_002465582.1| - 4e-08 33.3 0.0 5.8e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|219851150|ref|YP_002465582.1| - 9.3e-06 25.1 0.0 1.1e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 gi|219851150|ref|YP_002465582.1| - 2.7e-05 23.9 0.0 3.9e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|219851150|ref|YP_002465582.1| - 3.7e-05 23.2 0.0 6.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|219851150|ref|YP_002465582.1| - 0.00047 19.9 0.0 0.0008 19.1 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.11 gi|219851150|ref|YP_002465582.1| - 0.00049 19.1 0.0 0.00078 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CheR PF01739.18 gi|219851150|ref|YP_002465582.1| - 0.00053 19.5 0.0 0.62 9.5 0.0 2.3 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain TehB PF03848.14 gi|219851150|ref|YP_002465582.1| - 0.0006 19.3 0.0 0.00084 18.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|219851150|ref|YP_002465582.1| - 0.0019 18.2 0.0 0.0036 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|219851150|ref|YP_002465582.1| - 0.0033 17.1 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|219851150|ref|YP_002465582.1| - 0.0043 16.8 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit tRNA_U5-meth_tr PF05958.11 gi|219851150|ref|YP_002465582.1| - 0.0054 15.8 0.0 0.008 15.2 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase FtsJ PF01728.19 gi|219851150|ref|YP_002465582.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_24 PF13578.6 gi|219851150|ref|YP_002465582.1| - 0.028 15.5 0.0 0.081 14.0 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|219851150|ref|YP_002465582.1| - 0.037 13.1 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|219851150|ref|YP_002465582.1| - 0.053 13.1 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF938 PF06080.12 gi|219851150|ref|YP_002465582.1| - 0.089 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_20 PF12147.8 gi|219851150|ref|YP_002465582.1| - 0.14 11.3 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_33 PF10017.9 gi|219851150|ref|YP_002465582.1| - 0.15 11.2 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent PGM_PMM_I PF02878.16 gi|219851151|ref|YP_002465583.1| - 1.4e-40 138.2 0.0 1.3e-39 135.1 0.0 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|219851151|ref|YP_002465583.1| - 2.4e-23 82.7 0.0 5.1e-23 81.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|219851151|ref|YP_002465583.1| - 2.7e-21 75.9 0.0 4.8e-21 75.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|219851151|ref|YP_002465583.1| - 2.9e-10 40.2 0.1 6.6e-10 39.0 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CBM_6 PF03422.15 gi|219851153|ref|YP_002465585.1| - 1.8e-127 419.2 37.3 2.9e-21 76.0 0.3 7.8 7 0 0 7 7 7 7 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219851153|ref|YP_002465585.1| - 1.4e-77 257.1 19.6 6.6e-14 52.0 0.3 7.6 7 0 0 7 7 7 7 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219851153|ref|YP_002465585.1| - 2.7e-36 124.5 21.7 1.7e-07 31.5 0.3 7.6 7 0 0 7 7 7 7 Carbohydrate binding module (family 35) DUF4399 PF14347.6 gi|219851153|ref|YP_002465585.1| - 9.6e-07 29.1 0.2 40 4.7 0.0 7.1 7 0 0 7 7 7 0 Domain of unknown function (DUF4399) PEGA PF08308.11 gi|219851153|ref|YP_002465585.1| - 7.6e-05 22.5 2.6 0.18 11.7 0.4 5.4 6 0 0 6 6 6 1 PEGA domain DUF3108 PF11306.8 gi|219851153|ref|YP_002465585.1| - 0.00046 20.2 21.2 0.85 9.6 0.3 6.2 6 0 0 6 6 6 3 Protein of unknown function (DUF3108) Beta_helix PF13229.6 gi|219851153|ref|YP_002465585.1| - 0.0008 19.3 19.2 0.16 11.8 19.2 3.1 1 1 0 1 1 1 1 Right handed beta helix region DR2241 PF18069.1 gi|219851153|ref|YP_002465585.1| - 0.15 11.9 0.1 99 2.9 0.0 3.6 3 0 0 3 3 3 0 DR2241 stabilising domain Pectate_lyase_3 PF12708.7 gi|219851153|ref|YP_002465585.1| - 2.4 8.0 20.1 0.26 11.1 3.7 4.6 2 1 0 3 3 3 0 Pectate lyase superfamily protein GAF_2 PF13185.6 gi|219851154|ref|YP_002465586.1| - 2.4e-06 27.9 0.0 2.8e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|219851154|ref|YP_002465586.1| - 0.00031 21.1 0.0 0.00047 20.5 0.0 1.3 1 1 0 1 1 1 1 GAF domain GAF PF01590.26 gi|219851154|ref|YP_002465586.1| - 0.00062 20.4 0.0 0.00072 20.2 0.0 1.2 1 0 0 1 1 1 1 GAF domain AMP-binding PF00501.28 gi|219851155|ref|YP_002465587.1| - 2.5e-90 303.1 0.0 3e-90 302.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|219851155|ref|YP_002465587.1| - 1.8e-26 92.9 0.2 3.9e-26 91.8 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|219851155|ref|YP_002465587.1| - 6.3e-18 64.4 4.2 1.4e-17 63.3 4.2 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Gpr1_Fun34_YaaH PF01184.19 gi|219851156|ref|YP_002465588.1| - 4.2e-44 150.6 18.8 4.9e-44 150.4 18.8 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family CBM_6 PF03422.15 gi|219851157|ref|YP_002465589.1| - 1.3e-20 74.0 1.2 5.6e-20 71.9 0.0 2.7 3 1 0 3 3 3 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219851157|ref|YP_002465589.1| - 3.9e-12 46.3 0.1 1.2e-11 44.8 0.1 1.8 1 0 0 1 1 1 1 DUF5010 C-terminal domain Dockerin_1 PF00404.18 gi|219851157|ref|YP_002465589.1| - 1.6e-06 28.2 0.4 1.6e-06 28.2 0.4 2.9 4 0 0 4 4 4 1 Dockerin type I domain CBM_35 PF16990.5 gi|219851157|ref|YP_002465589.1| - 1.1e-05 25.6 1.1 0.0024 18.1 0.1 3.2 3 0 0 3 3 3 1 Carbohydrate binding module (family 35) EF-hand_6 PF13405.6 gi|219851157|ref|YP_002465589.1| - 0.00028 20.6 1.7 0.43 10.6 0.1 3.2 2 1 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219851157|ref|YP_002465589.1| - 0.022 14.3 10.5 0.14 11.8 0.2 3.3 4 0 0 4 4 4 0 EF hand DIPSY PF11763.8 gi|219851157|ref|YP_002465589.1| - 0.16 12.2 0.0 16 5.7 0.0 2.4 2 0 0 2 2 2 0 Cell-wall adhesin ligand-binding C-terminal EF-hand_8 PF13833.6 gi|219851157|ref|YP_002465589.1| - 1.2 9.1 3.0 2.1 8.3 0.2 2.5 2 0 0 2 2 2 0 EF-hand domain pair PD40 PF07676.12 gi|219851158|ref|YP_002465590.1| - 9.8e-06 25.4 1.4 0.16 11.9 0.0 3.0 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat Kelch_4 PF13418.6 gi|219851158|ref|YP_002465590.1| - 0.02 14.9 0.2 1.9 8.6 0.0 3.0 3 0 0 3 3 3 0 Galactose oxidase, central domain APS-reductase_C PF12139.8 gi|219851158|ref|YP_002465590.1| - 0.037 14.2 0.0 9.7 6.5 0.0 2.2 1 1 1 2 2 2 0 Adenosine-5'-phosphosulfate reductase beta subunit SecD-TM1 PF13721.6 gi|219851162|ref|YP_002465594.1| - 0.47 10.9 1.8 1.4 9.4 0.2 2.4 2 1 0 2 2 2 0 SecD export protein N-terminal TM region DUF1358 PF07096.11 gi|219851162|ref|YP_002465594.1| - 1.4 9.0 4.1 23 5.0 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1358) PrsW-protease PF13367.6 gi|219851164|ref|YP_002465596.1| - 2.8e-26 92.2 12.0 4.1e-26 91.6 12.0 1.1 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease Glutaredoxin PF00462.24 gi|219851165|ref|YP_002465597.1| - 9.2e-13 48.2 0.0 1.5e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|219851165|ref|YP_002465597.1| - 0.00067 20.0 0.0 0.00088 19.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|219851165|ref|YP_002465597.1| - 0.025 14.9 0.0 0.034 14.4 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|219851165|ref|YP_002465597.1| - 0.14 12.6 0.0 0.46 11.0 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin-like domain DUF836 PF05768.14 gi|219851165|ref|YP_002465597.1| - 0.15 12.5 0.1 0.2 12.1 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FeThRed_B PF02943.15 gi|219851166|ref|YP_002465598.1| - 8.7e-21 73.9 0.0 1.3e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.15 gi|219851166|ref|YP_002465598.1| - 0.058 13.0 2.0 0.13 11.8 2.0 1.6 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.20 gi|219851166|ref|YP_002465598.1| - 0.99 9.5 6.9 3.5 7.7 0.2 2.6 2 0 0 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.6 gi|219851166|ref|YP_002465598.1| - 3.8 8.1 5.4 12 6.6 1.8 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Zn-C2H2_12 PF18112.1 gi|219851166|ref|YP_002465598.1| - 7 7.2 6.3 44 4.7 0.3 2.7 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DUF1462 PF07315.11 gi|219851167|ref|YP_002465599.1| - 0.077 13.3 0.1 0.11 12.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1462) Pro_CA PF00484.19 gi|219851168|ref|YP_002465600.1| - 4.4e-46 157.0 0.0 5.1e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Carbonic anhydrase ILVD_EDD PF00920.21 gi|219851169|ref|YP_002465601.1| - 8.8e-213 707.6 5.1 1e-212 707.4 5.1 1.0 1 0 0 1 1 1 1 Dehydratase family DUF126 PF01989.16 gi|219851170|ref|YP_002465602.1| - 2.8e-35 120.0 0.6 2.8e-35 120.0 0.6 1.5 2 0 0 2 2 2 1 Aconitase X swivel domain AAA PF00004.29 gi|219851171|ref|YP_002465603.1| - 1.1e-44 152.0 0.3 2.1e-44 151.1 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|219851171|ref|YP_002465603.1| - 3.4e-15 55.6 0.3 8.8e-15 54.2 0.3 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|219851171|ref|YP_002465603.1| - 6.8e-06 26.3 0.0 1.3e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|219851171|ref|YP_002465603.1| - 7.7e-06 26.4 0.2 0.0013 19.2 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|219851171|ref|YP_002465603.1| - 2.6e-05 24.0 0.0 9.8e-05 22.2 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|219851171|ref|YP_002465603.1| - 0.0003 21.1 0.3 0.023 15.0 0.1 2.8 2 1 1 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|219851171|ref|YP_002465603.1| - 0.00037 20.5 0.5 0.0054 16.7 0.5 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) HALZ PF02183.18 gi|219851171|ref|YP_002465603.1| - 0.0004 20.6 0.8 0.00095 19.3 0.8 1.6 1 0 0 1 1 1 1 Homeobox associated leucine zipper Zeta_toxin PF06414.12 gi|219851171|ref|YP_002465603.1| - 0.00054 19.3 0.0 0.02 14.2 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.13 gi|219851171|ref|YP_002465603.1| - 0.00075 18.8 0.0 0.0014 17.9 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain YabA PF06156.13 gi|219851171|ref|YP_002465603.1| - 0.0012 19.5 0.2 0.0045 17.6 0.2 2.0 2 0 0 2 2 1 1 Initiation control protein YabA bZIP_1 PF00170.21 gi|219851171|ref|YP_002465603.1| - 0.0026 17.8 1.3 0.0076 16.3 1.3 1.8 1 0 0 1 1 1 1 bZIP transcription factor AAA_33 PF13671.6 gi|219851171|ref|YP_002465603.1| - 0.0054 16.9 0.1 0.019 15.2 0.1 2.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|219851171|ref|YP_002465603.1| - 0.0094 15.7 0.3 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein ZapB PF06005.12 gi|219851171|ref|YP_002465603.1| - 0.012 16.0 2.7 0.018 15.5 0.5 2.3 3 0 0 3 3 2 0 Cell division protein ZapB DUF815 PF05673.13 gi|219851171|ref|YP_002465603.1| - 0.012 14.8 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Torsin PF06309.11 gi|219851171|ref|YP_002465603.1| - 0.014 15.5 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_14 PF13173.6 gi|219851171|ref|YP_002465603.1| - 0.016 15.3 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|219851171|ref|YP_002465603.1| - 0.018 14.3 0.0 0.035 13.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|219851171|ref|YP_002465603.1| - 0.02 14.6 0.3 0.12 12.0 0.3 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_3 PF07726.11 gi|219851171|ref|YP_002465603.1| - 0.022 14.6 0.1 0.072 12.9 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|219851171|ref|YP_002465603.1| - 0.023 14.2 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region FlaC_arch PF05377.11 gi|219851171|ref|YP_002465603.1| - 0.033 14.6 1.2 0.24 11.8 0.4 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Mg_chelatase PF01078.21 gi|219851171|ref|YP_002465603.1| - 0.033 13.6 0.0 0.07 12.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|219851171|ref|YP_002465603.1| - 0.036 14.0 0.1 0.82 9.6 0.1 2.3 1 1 1 2 2 2 0 NACHT domain Prot_ATP_OB_N PF17758.1 gi|219851171|ref|YP_002465603.1| - 0.039 13.6 0.1 0.16 11.6 0.0 2.0 2 0 0 2 2 1 0 Proteasomal ATPase OB N-terminal domain AAA_18 PF13238.6 gi|219851171|ref|YP_002465603.1| - 0.049 14.2 0.1 0.46 11.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain DivIC PF04977.15 gi|219851171|ref|YP_002465603.1| - 0.054 13.3 1.4 0.14 12.0 1.4 1.7 1 0 0 1 1 1 0 Septum formation initiator ATPase PF06745.13 gi|219851171|ref|YP_002465603.1| - 0.057 12.8 0.7 0.42 9.9 0.1 2.4 2 1 1 3 3 2 0 KaiC CPT PF07931.12 gi|219851171|ref|YP_002465603.1| - 0.069 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NRBF2 PF08961.10 gi|219851171|ref|YP_002465603.1| - 0.087 12.4 1.0 0.16 11.6 1.0 1.3 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator TsaE PF02367.17 gi|219851171|ref|YP_002465603.1| - 0.12 12.3 0.0 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Allexi_40kDa PF05549.11 gi|219851171|ref|YP_002465603.1| - 0.15 11.6 0.3 6.3 6.2 0.3 2.2 2 0 0 2 2 2 0 Allexivirus 40kDa protein Parvo_NS1 PF01057.17 gi|219851171|ref|YP_002465603.1| - 0.18 10.9 0.1 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 bZIP_2 PF07716.15 gi|219851171|ref|YP_002465603.1| - 0.19 11.8 2.2 0.57 10.3 2.2 1.9 1 0 0 1 1 1 0 Basic region leucine zipper RNA_helicase PF00910.22 gi|219851171|ref|YP_002465603.1| - 0.19 12.1 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|219851171|ref|YP_002465603.1| - 0.43 10.9 2.0 0.58 10.5 0.3 1.9 2 1 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|219851171|ref|YP_002465603.1| - 0.48 10.1 4.4 1.4 8.6 0.5 3.1 3 1 0 3 3 3 0 AAA domain Flavoprotein PF02441.19 gi|219851173|ref|YP_002465605.1| - 2.8e-23 82.4 0.0 3.5e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 Flavoprotein UbiD PF01977.16 gi|219851174|ref|YP_002465606.1| - 9.2e-97 324.5 0.3 1.1e-96 324.2 0.3 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.13 gi|219851175|ref|YP_002465607.1| - 8.7e-147 489.0 0.0 9.8e-147 488.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HEAT_2 PF13646.6 gi|219851176|ref|YP_002465608.1| - 6.4e-38 129.0 6.2 2e-14 53.7 0.6 3.2 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|219851176|ref|YP_002465608.1| - 2.9e-18 64.6 14.5 0.0025 18.3 0.3 6.2 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|219851176|ref|YP_002465608.1| - 9.9e-18 62.7 0.3 0.27 11.6 0.0 6.4 6 0 0 6 6 6 5 HEAT repeat HEAT_EZ PF13513.6 gi|219851176|ref|YP_002465608.1| - 8.2e-13 48.6 11.0 0.36 11.4 0.1 6.3 5 2 2 7 7 7 5 HEAT-like repeat Arm PF00514.23 gi|219851176|ref|YP_002465608.1| - 5.1e-07 29.5 0.9 2.4 8.3 0.1 5.9 6 0 0 6 6 6 1 Armadillo/beta-catenin-like repeat NopRA1 PF16201.5 gi|219851176|ref|YP_002465608.1| - 0.16 11.5 0.0 4.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Nucleolar pre-ribosomal-associated protein 1 DUF432 PF04254.13 gi|219851177|ref|YP_002465609.1| - 1.9e-43 147.5 0.0 2.7e-43 147.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|219851178|ref|YP_002465610.1| - 5.3e-52 176.4 2.4 5.3e-52 176.4 2.4 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel HEAT_2 PF13646.6 gi|219851179|ref|YP_002465611.1| - 4.6e-18 65.4 7.1 1.4e-10 41.5 1.3 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|219851179|ref|YP_002465611.1| - 6.5e-10 38.7 18.2 0.00015 22.1 0.5 5.1 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|219851179|ref|YP_002465611.1| - 5.7e-06 26.1 2.8 0.00073 19.6 0.1 3.6 4 0 0 4 4 4 1 HEAT repeat HEAT_EZ PF13513.6 gi|219851179|ref|YP_002465611.1| - 0.00098 19.6 5.8 0.35 11.4 1.2 3.4 2 2 0 2 2 2 2 HEAT-like repeat Arm PF00514.23 gi|219851179|ref|YP_002465611.1| - 0.0034 17.4 0.1 2.3 8.4 0.0 3.4 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat VP4_helical PF17478.2 gi|219851180|ref|YP_002465612.1| - 0.012 15.1 0.1 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 Rotavirus VP4 helical domain DUF2516 PF10724.9 gi|219851180|ref|YP_002465612.1| - 0.4 11.0 5.2 0.12 12.7 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2516) YlbD_coat PF14071.6 gi|219851181|ref|YP_002465613.1| - 0.25 11.6 3.8 0.58 10.4 3.7 1.6 1 1 0 1 1 1 0 Putative coat protein Tubulin PF00091.25 gi|219851182|ref|YP_002465614.1| - 3.1e-26 92.8 0.2 6.8e-26 91.7 0.2 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|219851182|ref|YP_002465614.1| - 0.00028 20.2 0.0 0.00064 19.0 0.0 1.5 2 0 0 2 2 2 1 Tubulin like Amino_oxidase PF01593.24 gi|219851183|ref|YP_002465615.1| - 6.2e-27 95.0 0.0 7.3e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|219851183|ref|YP_002465615.1| - 1.5e-09 37.9 0.1 3.7e-09 36.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|219851183|ref|YP_002465615.1| - 2e-08 34.2 0.2 1.4e-07 31.5 0.2 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|219851183|ref|YP_002465615.1| - 0.00011 21.8 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|219851183|ref|YP_002465615.1| - 0.00012 21.5 0.0 0.0048 16.2 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|219851183|ref|YP_002465615.1| - 0.0077 15.4 0.1 0.018 14.1 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|219851183|ref|YP_002465615.1| - 0.019 13.7 0.0 0.12 11.0 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox PF00070.27 gi|219851183|ref|YP_002465615.1| - 0.22 12.1 0.0 6.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_2 PF00535.26 gi|219851184|ref|YP_002465616.1| - 4.5e-22 78.6 0.0 6e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|219851184|ref|YP_002465616.1| - 2.2e-06 27.4 0.0 2.8e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|219851184|ref|YP_002465616.1| - 0.00019 21.4 0.1 0.00029 20.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219851184|ref|YP_002465616.1| - 0.0078 16.7 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 TOC159_MAD PF11886.8 gi|219851184|ref|YP_002465616.1| - 0.18 10.7 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Translocase of chloroplast 159/132, membrane anchor domain LPG_synthase_TM PF03706.13 gi|219851185|ref|YP_002465617.1| - 6e-43 147.5 35.7 7.2e-43 147.2 35.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Pam17 PF08566.10 gi|219851185|ref|YP_002465617.1| - 3.9 7.3 5.0 0.88 9.4 0.5 2.2 2 1 1 3 3 3 0 Mitochondrial import protein Pam17 DUF2298 PF10060.9 gi|219851186|ref|YP_002465618.1| - 6.3e-102 341.8 40.6 5.1e-101 338.9 38.2 2.3 2 0 0 2 2 2 2 Uncharacterized membrane protein (DUF2298) Ribosomal_L7Ae PF01248.26 gi|219851187|ref|YP_002465619.1| - 4.9e-23 80.7 0.4 5.8e-23 80.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|219851187|ref|YP_002465619.1| - 0.00031 20.6 0.1 0.00053 19.8 0.0 1.4 2 0 0 2 2 2 1 PELOTA RNA binding domain Ribosomal_S28e PF01200.18 gi|219851188|ref|YP_002465620.1| - 7.3e-32 109.2 0.6 7.9e-32 109.1 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|219851189|ref|YP_002465621.1| - 5.8e-24 84.1 0.8 6.2e-24 84.0 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|219851189|ref|YP_002465621.1| - 1.4e-06 28.3 0.9 1.9e-06 27.9 0.9 1.2 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|219851189|ref|YP_002465621.1| - 2.8e-06 27.1 3.0 3.8e-06 26.7 3.0 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif VATC PF18716.1 gi|219851189|ref|YP_002465621.1| - 0.0064 16.3 5.1 0.018 14.9 5.1 1.7 1 1 0 1 1 1 1 Vms1-associating treble clef domain Arc_trans_TRASH PF08394.10 gi|219851189|ref|YP_002465621.1| - 0.025 14.9 3.0 0.065 13.6 3.0 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain zf-FLZ PF04570.14 gi|219851189|ref|YP_002465621.1| - 0.059 12.9 1.9 0.12 11.9 1.9 1.4 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 ICAM_N PF03921.14 gi|219851189|ref|YP_002465621.1| - 0.059 13.1 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain DUF2116 PF09889.9 gi|219851189|ref|YP_002465621.1| - 0.081 12.9 0.8 0.49 10.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NDK PF00334.19 gi|219851190|ref|YP_002465622.1| - 1.4e-52 177.3 0.0 1.7e-52 177.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF371 PF04027.13 gi|219851191|ref|YP_002465623.1| - 2.3e-46 157.1 0.0 2.6e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Exonuc_VII_S PF02609.16 gi|219851192|ref|YP_002465624.1| - 2.2e-19 69.3 5.7 2.4e-19 69.1 5.7 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit TPD52 PF04201.15 gi|219851192|ref|YP_002465624.1| - 0.14 11.8 1.3 0.14 11.8 1.3 1.0 1 0 0 1 1 1 0 Tumour protein D52 family Cyc-maltodext_C PF10438.9 gi|219851192|ref|YP_002465624.1| - 0.17 12.0 0.1 0.2 11.8 0.1 1.1 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Exonuc_VII_L PF02601.15 gi|219851193|ref|YP_002465625.1| - 4.9e-78 262.8 0.1 3.4e-69 233.7 0.1 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|219851193|ref|YP_002465625.1| - 3.8e-26 91.1 0.0 1.3e-25 89.4 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|219851193|ref|YP_002465625.1| - 6.6e-06 26.0 0.1 1.8e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain AP_endonuc_2 PF01261.24 gi|219851194|ref|YP_002465626.1| - 8.2e-14 51.5 0.0 1e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF21 PF01595.20 gi|219851195|ref|YP_002465627.1| - 7.2e-47 159.3 0.3 1e-46 158.9 0.3 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|219851195|ref|YP_002465627.1| - 3.9e-23 81.3 0.1 1.2e-22 79.8 0.1 1.9 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|219851195|ref|YP_002465627.1| - 1.8e-11 44.3 3.4 1.6e-05 25.3 0.2 2.7 2 0 0 2 2 2 2 CBS domain DNA_pol_B PF00136.21 gi|219851195|ref|YP_002465627.1| - 0.035 12.8 0.0 0.049 12.3 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase family B Formyl_trans_N PF00551.19 gi|219851196|ref|YP_002465628.1| - 3.2e-55 186.7 0.0 3.8e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Peripla_BP_4 PF13407.6 gi|219851196|ref|YP_002465628.1| - 0.017 14.7 0.7 0.035 13.7 0.7 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain Rpr2 PF04032.16 gi|219851197|ref|YP_002465629.1| - 2.9e-12 46.7 0.9 4.1e-12 46.2 0.9 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|219851197|ref|YP_002465629.1| - 0.05 13.6 0.6 0.092 12.8 0.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF4674 PF15719.5 gi|219851197|ref|YP_002465629.1| - 0.064 13.3 4.7 2.1 8.3 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4674) zf-RING_7 PF02591.15 gi|219851197|ref|YP_002465629.1| - 0.074 13.2 0.4 0.074 13.2 0.4 1.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain CRS1_YhbY PF01985.21 gi|219851198|ref|YP_002465630.1| - 2.1e-12 47.0 0.3 2.5e-12 46.8 0.3 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.19 gi|219851199|ref|YP_002465631.1| - 3.2e-56 188.8 0.0 3.6e-56 188.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|219851199|ref|YP_002465631.1| - 0.035 14.0 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain PaaX PF07848.12 gi|219851199|ref|YP_002465631.1| - 0.1 12.8 0.1 0.56 10.5 0.1 2.0 2 0 0 2 2 2 0 PaaX-like protein dsDNA_bind PF01984.20 gi|219851200|ref|YP_002465632.1| - 9.2e-29 100.0 15.0 1e-28 99.8 15.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF937 PF06078.11 gi|219851200|ref|YP_002465632.1| - 0.062 13.9 6.6 0.091 13.4 6.6 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF937) Alkyl_sulf_C PF14864.6 gi|219851200|ref|YP_002465632.1| - 0.081 13.2 0.1 0.12 12.7 0.1 1.4 1 1 0 1 1 1 0 Alkyl sulfatase C-terminal MAGE PF01454.19 gi|219851200|ref|YP_002465632.1| - 0.24 11.1 5.5 0.62 9.7 5.5 1.6 1 1 0 1 1 1 0 MAGE family YjeJ PF15922.5 gi|219851200|ref|YP_002465632.1| - 0.26 10.5 4.1 0.31 10.2 4.1 1.0 1 0 0 1 1 1 0 YjeJ-like SUIM_assoc PF16619.5 gi|219851200|ref|YP_002465632.1| - 7.1 6.8 9.0 13 5.9 9.0 1.4 1 0 0 1 1 1 0 Unstructured region C-term to UIM in Ataxin3 Diphthami_syn_2 PF01902.17 gi|219851201|ref|YP_002465633.1| - 0.00038 20.0 0.0 0.00072 19.1 0.0 1.5 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|219851201|ref|YP_002465633.1| - 0.00077 19.0 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|219851201|ref|YP_002465633.1| - 0.0034 17.2 0.0 2.3 7.9 0.0 2.1 2 0 0 2 2 2 2 PP-loop family ThiI PF02568.14 gi|219851201|ref|YP_002465633.1| - 0.018 14.6 0.0 0.041 13.5 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|219851201|ref|YP_002465633.1| - 0.02 14.9 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|219851201|ref|YP_002465633.1| - 0.14 11.7 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.16 gi|219851201|ref|YP_002465633.1| - 0.19 10.5 0.0 0.23 10.2 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase Ribosomal_L39 PF00832.20 gi|219851202|ref|YP_002465634.1| - 8.1e-20 70.2 9.2 9.5e-20 70.0 9.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Nmad3 PF18754.1 gi|219851202|ref|YP_002465634.1| - 0.052 13.1 0.4 0.052 13.1 0.4 1.0 1 0 0 1 1 1 0 Nucleotide modification associated domain 3 Ribosomal_L31e PF01198.19 gi|219851203|ref|YP_002465635.1| - 5e-14 52.3 0.4 5.9e-14 52.1 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|219851204|ref|YP_002465636.1| - 2.1e-66 223.1 0.6 2.4e-66 222.9 0.6 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|219851205|ref|YP_002465637.1| - 4.7e-08 33.2 0.0 5.8e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|219851206|ref|YP_002465638.1| - 7e-20 71.1 0.1 9e-20 70.8 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit PI3K_P85_iSH2 PF16454.5 gi|219851206|ref|YP_002465638.1| - 0.0024 17.5 0.1 0.0035 16.9 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Prefoldin_2 PF01920.20 gi|219851206|ref|YP_002465638.1| - 0.0046 16.9 0.4 0.12 12.4 0.1 2.1 2 0 0 2 2 2 1 Prefoldin subunit DUF1383 PF07134.11 gi|219851206|ref|YP_002465638.1| - 0.0089 15.2 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1383) FlaC_arch PF05377.11 gi|219851206|ref|YP_002465638.1| - 0.018 15.4 2.5 0.23 11.9 0.2 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF2205 PF10224.9 gi|219851206|ref|YP_002465638.1| - 0.023 14.7 1.2 0.091 12.8 0.2 2.1 2 0 0 2 2 2 0 Short coiled-coil protein Spc7 PF08317.11 gi|219851206|ref|YP_002465638.1| - 0.033 13.1 0.7 4.1 6.2 0.3 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein BMFP PF04380.13 gi|219851206|ref|YP_002465638.1| - 0.036 14.5 0.2 0.079 13.4 0.2 1.6 1 0 0 1 1 1 0 Membrane fusogenic activity SLATT_4 PF18186.1 gi|219851206|ref|YP_002465638.1| - 0.04 13.6 0.0 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 4 FLgD_tudor PF13861.6 gi|219851206|ref|YP_002465638.1| - 0.069 13.4 0.5 0.86 9.9 0.3 2.2 2 0 0 2 2 2 0 FlgD Tudor-like domain KxDL PF10241.9 gi|219851206|ref|YP_002465638.1| - 0.074 13.3 1.9 0.16 12.3 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein Nsp1_C PF05064.13 gi|219851206|ref|YP_002465638.1| - 0.098 12.5 0.8 0.58 10.0 0.1 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Hema_stalk PF08720.10 gi|219851206|ref|YP_002465638.1| - 0.11 12.2 0.4 0.14 11.9 0.4 1.2 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk DUF1287 PF06940.11 gi|219851206|ref|YP_002465638.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1287) DUF1664 PF07889.12 gi|219851206|ref|YP_002465638.1| - 0.22 11.5 1.8 0.31 11.1 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF16 PF01519.16 gi|219851206|ref|YP_002465638.1| - 0.46 11.0 2.7 1.4 9.4 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 SRP54 PF00448.22 gi|219851207|ref|YP_002465639.1| - 5.7e-65 218.6 1.1 7.7e-65 218.2 1.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|219851207|ref|YP_002465639.1| - 3.4e-08 33.6 1.2 1.1e-07 31.9 1.2 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|219851207|ref|YP_002465639.1| - 0.00044 20.0 0.5 0.0012 18.6 0.5 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|219851207|ref|YP_002465639.1| - 0.00062 19.1 0.1 0.0015 17.9 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|219851207|ref|YP_002465639.1| - 0.00079 19.9 1.0 0.0024 18.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|219851207|ref|YP_002465639.1| - 0.0015 18.4 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|219851207|ref|YP_002465639.1| - 0.0028 17.8 0.2 0.0086 16.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|219851207|ref|YP_002465639.1| - 0.0067 16.8 0.0 0.015 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|219851207|ref|YP_002465639.1| - 0.0085 15.1 0.2 0.02 13.9 0.2 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|219851207|ref|YP_002465639.1| - 0.014 15.0 1.6 0.035 13.7 1.6 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|219851207|ref|YP_002465639.1| - 0.016 14.9 0.4 0.031 14.0 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|219851207|ref|YP_002465639.1| - 0.019 15.4 0.2 0.054 13.9 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|219851207|ref|YP_002465639.1| - 0.025 14.5 0.6 0.069 13.1 0.3 2.0 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|219851207|ref|YP_002465639.1| - 0.055 13.7 0.7 0.18 12.1 0.7 1.9 1 1 0 1 1 1 0 AAA domain KdpD PF02702.17 gi|219851207|ref|YP_002465639.1| - 0.059 12.8 1.1 0.094 12.2 0.1 1.9 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain DUF348 PF03990.14 gi|219851207|ref|YP_002465639.1| - 0.074 12.8 1.9 0.19 11.5 0.2 2.5 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain AAA_22 PF13401.6 gi|219851207|ref|YP_002465639.1| - 0.076 13.3 0.2 0.33 11.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|219851207|ref|YP_002465639.1| - 0.099 12.3 0.2 1.2 8.8 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase CbiA PF01656.23 gi|219851207|ref|YP_002465639.1| - 0.15 12.1 1.8 0.36 10.9 1.8 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|219851207|ref|YP_002465639.1| - 0.16 12.3 0.5 0.51 10.7 0.5 1.8 1 1 0 1 1 1 0 AAA domain HlyD PF00529.20 gi|219851207|ref|YP_002465639.1| - 4 7.4 8.6 3.1 7.8 0.7 2.6 1 1 0 2 2 2 0 HlyD membrane-fusion protein of T1SS SRP54 PF00448.22 gi|219851208|ref|YP_002465640.1| - 4.2e-66 222.3 0.6 7.2e-66 221.6 0.6 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|219851208|ref|YP_002465640.1| - 5.8e-28 97.4 0.3 2e-27 95.7 0.2 2.1 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|219851208|ref|YP_002465640.1| - 2.5e-17 62.9 2.1 7.8e-17 61.3 2.1 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|219851208|ref|YP_002465640.1| - 2.5e-08 34.0 0.1 3.3e-07 30.4 0.1 2.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|219851208|ref|YP_002465640.1| - 1.3e-06 28.1 0.3 3.3e-06 26.8 0.3 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|219851208|ref|YP_002465640.1| - 2e-05 24.0 0.3 0.00023 20.5 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin APS_kinase PF01583.20 gi|219851208|ref|YP_002465640.1| - 2.5e-05 24.2 0.2 7.5e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase MeaB PF03308.16 gi|219851208|ref|YP_002465640.1| - 0.00076 18.5 0.1 0.0021 17.1 0.1 1.7 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|219851208|ref|YP_002465640.1| - 0.0012 19.3 0.3 0.011 16.2 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|219851208|ref|YP_002465640.1| - 0.0014 18.9 0.4 0.0051 17.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|219851208|ref|YP_002465640.1| - 0.0017 18.3 0.1 0.0045 16.9 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|219851208|ref|YP_002465640.1| - 0.002 18.7 0.1 0.0078 16.8 0.0 2.1 2 1 0 2 2 1 1 AAA domain 6PF2K PF01591.18 gi|219851208|ref|YP_002465640.1| - 0.0039 16.5 0.0 0.0075 15.6 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Thymidylate_kin PF02223.17 gi|219851208|ref|YP_002465640.1| - 0.0071 16.0 0.1 0.021 14.5 0.1 1.8 1 0 0 1 1 1 1 Thymidylate kinase KTI12 PF08433.10 gi|219851208|ref|YP_002465640.1| - 0.0074 15.8 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|219851208|ref|YP_002465640.1| - 0.015 15.1 0.6 0.075 12.7 0.5 2.3 2 1 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 gi|219851208|ref|YP_002465640.1| - 0.024 13.8 0.5 1.4 8.0 0.1 2.5 2 0 0 2 2 2 0 Anion-transporting ATPase TrwB_AAD_bind PF10412.9 gi|219851208|ref|YP_002465640.1| - 0.028 13.3 0.2 0.058 12.3 0.2 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ParA PF10609.9 gi|219851208|ref|YP_002465640.1| - 0.042 13.3 0.0 0.079 12.4 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|219851208|ref|YP_002465640.1| - 0.044 13.6 0.2 0.11 12.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|219851208|ref|YP_002465640.1| - 0.048 13.8 0.1 0.11 12.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.17 gi|219851208|ref|YP_002465640.1| - 0.052 13.3 0.1 0.14 11.9 0.1 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein LpxK PF02606.14 gi|219851208|ref|YP_002465640.1| - 0.052 12.6 0.1 0.095 11.8 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_31 PF13614.6 gi|219851208|ref|YP_002465640.1| - 0.069 13.1 0.6 0.2 11.6 0.1 2.0 2 1 0 2 2 1 0 AAA domain SRPRB PF09439.10 gi|219851208|ref|YP_002465640.1| - 0.083 12.3 1.3 2 7.8 0.1 2.6 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit DUF1598 PF07643.11 gi|219851208|ref|YP_002465640.1| - 0.083 13.1 1.1 10 6.5 0.1 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1598) AAA_19 PF13245.6 gi|219851208|ref|YP_002465640.1| - 0.1 13.0 0.8 0.24 11.7 0.2 2.0 3 0 0 3 3 1 0 AAA domain NTPase_1 PF03266.15 gi|219851208|ref|YP_002465640.1| - 0.11 12.5 1.4 0.17 11.8 0.1 2.0 3 0 0 3 3 2 0 NTPase ResIII PF04851.15 gi|219851208|ref|YP_002465640.1| - 0.16 12.0 0.2 0.52 10.3 0.1 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit T3SS_basalb_I PF17001.5 gi|219851208|ref|YP_002465640.1| - 0.32 11.6 3.6 3.5 8.3 0.6 3.3 4 0 0 4 4 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI Methyltrn_RNA_2 PF04013.12 gi|219851209|ref|YP_002465641.1| - 2.5e-50 170.9 0.0 2.9e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.17 gi|219851210|ref|YP_002465642.1| - 2.4e-10 40.7 0.1 5.9e-10 39.4 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.18 gi|219851211|ref|YP_002465643.1| - 2.5e-36 123.5 2.5 2.8e-36 123.4 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|219851212|ref|YP_002465644.1| - 3.7e-09 36.9 0.2 4.3e-09 36.8 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 FumaraseC_C PF10415.9 gi|219851212|ref|YP_002465644.1| - 0.033 14.6 0.2 0.26 11.7 0.0 2.2 1 1 1 2 2 2 0 Fumarase C C-terminus DUF655 PF04919.12 gi|219851213|ref|YP_002465645.1| - 5e-63 212.3 1.3 5.7e-63 212.1 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|219851213|ref|YP_002465645.1| - 0.002 18.4 0.0 0.004 17.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|219851214|ref|YP_002465646.1| - 3.8e-41 140.9 0.0 5.2e-41 140.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|219851214|ref|YP_002465646.1| - 0.00013 22.6 0.0 0.00022 21.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851214|ref|YP_002465646.1| - 0.00048 20.7 0.0 0.00091 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851214|ref|YP_002465646.1| - 0.028 14.2 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Herp-Cyclin PF09241.10 gi|219851214|ref|YP_002465646.1| - 0.12 13.1 0.0 17 6.1 0.0 2.9 2 1 1 3 3 3 0 Herpesviridae viral cyclin Methyltransf_12 PF08242.12 gi|219851214|ref|YP_002465646.1| - 0.19 12.5 0.0 0.36 11.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|219851215|ref|YP_002465647.1| - 5.4e-08 32.6 0.0 4.6e-06 26.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|219851215|ref|YP_002465647.1| - 4.5e-07 30.4 0.4 6.1e-06 26.8 0.4 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851215|ref|YP_002465647.1| - 4.5e-07 30.5 0.1 6.9e-06 26.7 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851215|ref|YP_002465647.1| - 8.4e-07 29.0 0.0 4.7e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851215|ref|YP_002465647.1| - 1e-06 28.6 0.0 1.6e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|219851215|ref|YP_002465647.1| - 8.9e-05 22.2 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|219851215|ref|YP_002465647.1| - 0.0002 22.0 0.1 0.0017 19.1 0.1 2.2 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219851215|ref|YP_002465647.1| - 0.00029 20.7 0.0 0.00042 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|219851215|ref|YP_002465647.1| - 0.00036 20.0 0.4 0.00081 18.9 0.2 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|219851215|ref|YP_002465647.1| - 0.0024 17.9 0.0 0.0036 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain OGG_N PF07934.12 gi|219851216|ref|YP_002465648.1| - 1.5e-18 67.0 0.1 2.9e-17 62.9 0.1 2.1 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|219851216|ref|YP_002465648.1| - 0.00013 22.3 0.0 0.0002 21.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|219851216|ref|YP_002465648.1| - 0.0032 17.3 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif gpW PF02831.15 gi|219851216|ref|YP_002465648.1| - 0.017 15.0 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 gpW AnfO_nitrog PF09582.10 gi|219851217|ref|YP_002465649.1| - 4.6e-62 208.7 0.0 5.2e-62 208.6 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) 2Fe-2S_thioredx PF01257.19 gi|219851218|ref|YP_002465650.1| - 2.8e-05 24.0 0.0 3.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.12 gi|219851218|ref|YP_002465650.1| - 2.9e-05 24.0 0.0 0.00014 21.8 0.0 1.7 1 1 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|219851218|ref|YP_002465650.1| - 0.0009 19.7 0.0 0.001 19.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Oxidored_nitro PF00148.19 gi|219851219|ref|YP_002465651.1| - 2.2e-112 375.7 0.0 2.6e-112 375.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|219851220|ref|YP_002465652.1| - 4.5e-116 387.9 2.3 5.1e-116 387.7 2.3 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NAT PF04768.13 gi|219851220|ref|YP_002465652.1| - 0.007 16.0 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 NAT, N-acetyltransferase, of N-acetylglutamate synthase AAA_24 PF13479.6 gi|219851220|ref|YP_002465652.1| - 0.045 13.5 0.1 0.077 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain Oxidored_nitro PF00148.19 gi|219851221|ref|YP_002465653.1| - 1.6e-132 442.0 0.0 1.8e-132 441.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase MFS_MOT1 PF16983.5 gi|219851221|ref|YP_002465653.1| - 0.16 12.4 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 Molybdate transporter of MFS superfamily Oxidored_nitro PF00148.19 gi|219851222|ref|YP_002465654.1| - 9e-144 479.1 0.3 1.1e-143 478.8 0.3 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase P-II PF00543.22 gi|219851223|ref|YP_002465655.1| - 5.5e-20 71.9 1.8 1.2e-19 70.8 1.8 1.6 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II 2-Hacid_dh_C PF02826.19 gi|219851223|ref|YP_002465655.1| - 0.089 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P-II PF00543.22 gi|219851224|ref|YP_002465656.1| - 7.6e-27 93.9 1.6 8.7e-27 93.7 1.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Fer4_NifH PF00142.18 gi|219851225|ref|YP_002465657.1| - 1.2e-129 431.5 0.3 1.4e-129 431.3 0.3 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|219851225|ref|YP_002465657.1| - 1.4e-12 47.7 0.0 3.4e-12 46.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|219851225|ref|YP_002465657.1| - 1.1e-08 35.2 3.2 1.3e-08 34.9 0.1 2.3 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|219851225|ref|YP_002465657.1| - 3.8e-07 29.8 0.5 1.8e-05 24.3 0.2 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|219851225|ref|YP_002465657.1| - 5e-06 25.9 1.8 5.3e-06 25.8 0.3 1.8 3 0 0 3 3 3 1 Anion-transporting ATPase MeaB PF03308.16 gi|219851225|ref|YP_002465657.1| - 0.00016 20.7 0.0 0.00026 20.0 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|219851225|ref|YP_002465657.1| - 0.0052 16.1 0.8 0.0078 15.5 0.1 1.6 2 0 0 2 2 2 1 ATPase MipZ AAA_24 PF13479.6 gi|219851225|ref|YP_002465657.1| - 0.0058 16.4 0.0 0.0087 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|219851225|ref|YP_002465657.1| - 0.015 15.6 0.1 0.054 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|219851225|ref|YP_002465657.1| - 0.04 13.6 0.4 0.08 12.6 0.4 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|219851225|ref|YP_002465657.1| - 0.047 13.3 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|219851225|ref|YP_002465657.1| - 0.052 13.9 0.0 0.11 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|219851225|ref|YP_002465657.1| - 0.075 12.8 0.4 0.14 11.9 0.4 1.6 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein CBP_BcsQ PF06564.12 gi|219851225|ref|YP_002465657.1| - 0.09 12.2 0.1 9.6 5.6 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Repressor_Mnt PF11423.8 gi|219851225|ref|YP_002465657.1| - 0.14 11.9 0.0 13 5.7 0.0 2.5 2 0 0 2 2 2 0 Regulatory protein Mnt RNA_helicase PF00910.22 gi|219851225|ref|YP_002465657.1| - 0.15 12.5 0.1 0.38 11.1 0.1 1.7 2 0 0 2 2 2 0 RNA helicase Thymidylate_kin PF02223.17 gi|219851225|ref|YP_002465657.1| - 0.17 11.5 0.7 0.37 10.4 0.1 1.8 2 0 0 2 2 2 0 Thymidylate kinase NB-ARC PF00931.22 gi|219851225|ref|YP_002465657.1| - 0.23 10.6 0.3 0.43 9.7 0.3 1.3 1 0 0 1 1 1 0 NB-ARC domain Peptidase_S66 PF02016.15 gi|219851227|ref|YP_002465659.1| - 0.17 12.0 0.0 0.29 11.2 0.0 1.7 1 1 0 1 1 1 0 LD-carboxypeptidase N-terminal domain Frankia_peptide PF14407.6 gi|219851227|ref|YP_002465659.1| - 0.19 11.8 0.0 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. YdjM PF04307.14 gi|219851228|ref|YP_002465660.1| - 4e-19 68.6 8.2 4.6e-19 68.4 8.2 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Gram_pos_anchor PF00746.21 gi|219851228|ref|YP_002465660.1| - 5.7 7.0 6.8 6.2 6.9 2.9 2.6 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Aldedh PF00171.22 gi|219851229|ref|YP_002465661.1| - 1.4e-162 541.4 0.1 1.6e-162 541.2 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|219851229|ref|YP_002465661.1| - 0.089 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) AdoHcyase PF05221.17 gi|219851230|ref|YP_002465662.1| - 4.4e-50 170.5 0.0 9.9e-25 87.3 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|219851230|ref|YP_002465662.1| - 7.6e-47 159.4 0.9 2.1e-46 158.0 0.4 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|219851230|ref|YP_002465662.1| - 2.6e-10 40.0 0.3 4.5e-10 39.2 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|219851230|ref|YP_002465662.1| - 1.1e-06 28.3 0.1 2.7e-06 27.0 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Urocanase PF01175.18 gi|219851230|ref|YP_002465662.1| - 0.1 12.2 0.4 0.21 11.2 0.4 1.5 1 0 0 1 1 1 0 Urocanase Rossmann-like domain TrkA_N PF02254.18 gi|219851230|ref|YP_002465662.1| - 0.11 12.7 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain His_biosynth PF00977.21 gi|219851231|ref|YP_002465663.1| - 5.4e-88 294.3 0.6 6.1e-88 294.1 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|219851231|ref|YP_002465663.1| - 1.1e-06 28.3 2.9 0.0035 16.8 0.9 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|219851231|ref|YP_002465663.1| - 9.1e-06 25.0 0.1 0.0065 15.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|219851231|ref|YP_002465663.1| - 2.8e-05 23.5 0.3 0.031 13.6 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|219851231|ref|YP_002465663.1| - 7.5e-05 22.1 1.5 0.082 12.1 0.3 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|219851231|ref|YP_002465663.1| - 0.00039 19.9 0.2 0.0097 15.3 0.0 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|219851231|ref|YP_002465663.1| - 0.0023 17.3 0.7 0.27 10.5 0.1 2.3 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|219851231|ref|YP_002465663.1| - 0.0051 15.9 1.9 0.31 10.0 0.1 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|219851231|ref|YP_002465663.1| - 0.99 8.4 4.0 6.4 5.7 0.1 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase tRNA_synthFbeta PF17759.1 gi|219851232|ref|YP_002465664.1| - 1.4e-34 119.4 0.0 2.6e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|219851232|ref|YP_002465664.1| - 3.7e-18 65.6 0.1 1e-16 61.0 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|219851232|ref|YP_002465664.1| - 7.6e-15 55.0 0.0 1.5e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|219851232|ref|YP_002465664.1| - 0.088 13.0 0.0 1.1 9.5 0.0 2.6 2 1 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|219851233|ref|YP_002465665.1| - 3.3e-89 298.6 0.0 4.4e-89 298.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|219851233|ref|YP_002465665.1| - 2.7e-10 40.1 0.0 2.2e-06 27.3 0.0 2.5 3 0 0 3 3 3 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|219851233|ref|YP_002465665.1| - 0.0012 18.0 0.3 0.017 14.2 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) PheRS_DBD3 PF18553.1 gi|219851233|ref|YP_002465665.1| - 0.013 15.8 0.1 0.042 14.1 0.0 1.9 2 0 0 2 2 2 0 PheRS DNA binding domain 3 DUF1495 PF07381.11 gi|219851233|ref|YP_002465665.1| - 0.12 12.2 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) tRNA-synt_1b PF00579.25 gi|219851234|ref|YP_002465666.1| - 1.2e-27 97.0 0.0 1.8e-15 57.1 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.17 gi|219851235|ref|YP_002465667.1| - 8.9e-44 147.5 1.1 6.1e-21 74.3 0.1 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|219851235|ref|YP_002465667.1| - 4.3e-23 80.8 0.4 8.3e-11 41.4 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|219851235|ref|YP_002465667.1| - 4.7e-05 23.5 0.0 0.42 10.8 0.0 2.5 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term DUF3197 PF11432.8 gi|219851235|ref|YP_002465667.1| - 0.17 11.8 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) HTH_IclR PF09339.10 gi|219851235|ref|YP_002465667.1| - 2.6 7.9 4.7 21 5.0 0.1 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain Response_reg PF00072.24 gi|219851236|ref|YP_002465668.1| - 7.7e-24 84.0 0.2 1.2e-23 83.4 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219851236|ref|YP_002465668.1| - 1.7e-07 31.5 0.1 3.6e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|219851236|ref|YP_002465668.1| - 1.4e-05 25.3 0.0 3.3e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|219851236|ref|YP_002465668.1| - 0.00072 19.5 0.1 0.0021 18.0 0.1 1.8 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|219851237|ref|YP_002465669.1| - 3.2e-06 27.1 0.0 8.7e-06 25.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|219851237|ref|YP_002465669.1| - 9.2e-06 25.9 0.0 0.035 14.3 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|219851237|ref|YP_002465669.1| - 3.1e-05 24.4 0.0 5.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219851237|ref|YP_002465669.1| - 0.00077 19.7 0.0 0.0065 16.7 0.0 2.3 1 1 0 1 1 1 1 PAS domain SPOB_a PF14689.6 gi|219851237|ref|YP_002465669.1| - 0.0018 17.9 0.1 0.0039 16.9 0.1 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_8 PF13188.7 gi|219851237|ref|YP_002465669.1| - 0.0024 17.8 0.0 0.0063 16.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|219851237|ref|YP_002465669.1| - 0.0045 17.0 0.2 0.01 15.9 0.2 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|219851237|ref|YP_002465669.1| - 0.008 15.8 0.6 0.016 14.7 0.6 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase FrhB_FdhB_C PF04432.13 gi|219851239|ref|YP_002465671.1| - 2.9e-34 118.2 0.3 2.9e-34 118.2 0.3 1.8 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|219851239|ref|YP_002465671.1| - 4e-23 81.3 0.0 9e-23 80.2 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|219851239|ref|YP_002465671.1| - 3.3e-06 26.7 19.8 0.00032 20.4 2.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219851239|ref|YP_002465671.1| - 5.1e-06 26.5 14.2 0.0015 18.6 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851239|ref|YP_002465671.1| - 2.8e-05 24.6 16.7 3.6e-05 24.2 14.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219851239|ref|YP_002465671.1| - 0.00017 22.1 17.9 0.00087 19.8 16.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851239|ref|YP_002465671.1| - 0.00065 19.8 20.8 0.0035 17.5 17.3 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851239|ref|YP_002465671.1| - 0.0025 18.2 17.5 0.0073 16.7 15.1 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219851239|ref|YP_002465671.1| - 0.0045 17.4 1.2 0.0045 17.4 1.2 3.9 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219851239|ref|YP_002465671.1| - 0.0096 16.0 2.4 0.0096 16.0 2.4 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851239|ref|YP_002465671.1| - 0.012 15.6 2.4 0.012 15.6 2.4 3.5 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219851239|ref|YP_002465671.1| - 0.082 13.1 12.2 0.46 10.7 2.0 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219851239|ref|YP_002465671.1| - 0.086 13.7 21.1 0.31 11.9 0.4 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851239|ref|YP_002465671.1| - 1.3 9.2 23.5 1.4 9.1 20.1 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851239|ref|YP_002465671.1| - 4.9 8.3 26.4 0.57 11.2 4.2 4.0 4 1 0 4 4 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219851239|ref|YP_002465671.1| - 5.6 8.0 25.5 0.46 11.5 1.3 3.6 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 gi|219851240|ref|YP_002465672.1| - 8.9e-88 295.1 0.0 1.1e-87 294.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|219851240|ref|YP_002465672.1| - 3.2e-33 114.1 0.0 6e-33 113.2 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|219851240|ref|YP_002465672.1| - 7.2e-20 70.7 1.1 1.8e-19 69.4 1.1 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain zf-ISL3 PF14690.6 gi|219851241|ref|YP_002465673.1| - 4.3e-06 27.3 2.4 8.1e-06 26.4 2.4 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|219851241|ref|YP_002465673.1| - 0.0015 18.5 2.9 0.0035 17.3 2.9 1.6 1 1 0 1 1 1 1 Transposase zinc-ribbon domain FYVE PF01363.21 gi|219851241|ref|YP_002465673.1| - 0.17 12.0 4.8 0.48 10.6 4.8 1.7 1 1 0 1 1 1 0 FYVE zinc finger Hydantoinase_A PF01968.18 gi|219851242|ref|YP_002465674.1| - 4.7e-12 45.8 0.0 1.4e-11 44.2 0.0 1.8 1 1 0 1 1 1 1 Hydantoinase/oxoprolinase ATP-grasp_3 PF02655.14 gi|219851243|ref|YP_002465675.1| - 6.8e-28 97.7 0.0 2.4e-27 96.0 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|219851243|ref|YP_002465675.1| - 0.0008 19.6 0.0 0.0019 18.4 0.0 1.6 1 1 0 1 1 1 1 pre ATP-grasp 3 domain ATPgrasp_ST PF14397.6 gi|219851243|ref|YP_002465675.1| - 0.055 12.7 0.0 1.9 7.7 0.0 2.3 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp SurE PF01975.17 gi|219851244|ref|YP_002465676.1| - 3.7e-52 177.0 0.1 4.6e-52 176.7 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Rib_5-P_isom_A PF06026.14 gi|219851245|ref|YP_002465677.1| - 1.3e-56 190.9 0.0 1.6e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|219851245|ref|YP_002465677.1| - 1.6e-06 28.1 0.0 0.00015 21.8 0.0 2.3 1 1 1 2 2 2 2 DeoR C terminal sensor domain TrmB PF01978.19 gi|219851246|ref|YP_002465678.1| - 5.5e-05 23.0 0.0 0.0001 22.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|219851246|ref|YP_002465678.1| - 0.00074 19.4 0.5 0.0023 17.8 0.1 2.0 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|219851246|ref|YP_002465678.1| - 0.0047 16.8 0.0 0.0068 16.2 0.0 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit PadR PF03551.14 gi|219851246|ref|YP_002465678.1| - 0.0072 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|219851246|ref|YP_002465678.1| - 0.011 15.9 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|219851246|ref|YP_002465678.1| - 0.073 13.0 0.0 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PIG-L PF02585.17 gi|219851247|ref|YP_002465679.1| - 6.5e-21 75.3 0.5 1.3e-20 74.4 0.5 1.5 1 1 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|219851247|ref|YP_002465679.1| - 0.12 12.4 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Hexapep_2 PF14602.6 gi|219851248|ref|YP_002465680.1| - 1.9e-06 27.5 11.8 2.3e-05 24.1 3.5 3.4 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|219851248|ref|YP_002465680.1| - 6.5e-06 25.7 12.7 8e-06 25.4 2.4 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Polysacc_synt_3 PF13440.6 gi|219851249|ref|YP_002465681.1| - 6.2e-21 74.9 9.2 6.2e-21 74.9 9.2 2.4 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|219851249|ref|YP_002465681.1| - 4.4e-10 39.4 14.7 4.4e-10 39.4 14.7 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Thioredoxin PF00085.20 gi|219851250|ref|YP_002465682.1| - 1.3e-23 83.0 0.0 1.6e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|219851250|ref|YP_002465682.1| - 3.3e-06 26.9 0.0 5.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|219851250|ref|YP_002465682.1| - 7.8e-06 26.3 0.0 8.2e-05 23.0 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|219851250|ref|YP_002465682.1| - 0.00014 22.1 0.0 0.54 10.6 0.0 2.8 1 1 2 3 3 3 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|219851250|ref|YP_002465682.1| - 0.00058 19.3 0.0 0.00082 18.8 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|219851250|ref|YP_002465682.1| - 0.002 18.1 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Phosducin PF02114.16 gi|219851250|ref|YP_002465682.1| - 0.0069 15.4 0.0 0.008 15.1 0.0 1.3 1 1 0 1 1 1 1 Phosducin Redoxin PF08534.10 gi|219851250|ref|YP_002465682.1| - 0.012 15.4 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Redoxin DUF953 PF06110.11 gi|219851250|ref|YP_002465682.1| - 0.14 11.7 0.1 0.67 9.6 0.1 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DEAD PF00270.29 gi|219851251|ref|YP_002465683.1| - 3.6e-26 92.0 0.0 7.3e-26 91.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|219851251|ref|YP_002465683.1| - 1e-13 51.6 0.0 6.1e-13 49.1 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain YdjM PF04307.14 gi|219851252|ref|YP_002465684.1| - 5.8e-17 61.5 11.8 1.5e-16 60.2 11.7 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF543 PF04418.12 gi|219851252|ref|YP_002465684.1| - 2.1 8.4 5.4 9.9 6.2 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF543) DoxX_3 PF13781.6 gi|219851252|ref|YP_002465684.1| - 4.3 8.0 11.3 0.1 13.2 1.7 2.9 3 2 0 3 3 3 0 DoxX-like family PRA1 PF03208.19 gi|219851252|ref|YP_002465684.1| - 5.1 6.7 5.5 3.2 7.4 0.5 2.3 2 0 0 2 2 2 0 PRA1 family protein Peptidase_M20 PF01546.28 gi|219851253|ref|YP_002465685.1| - 2.7e-36 125.2 0.0 3.6e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|219851253|ref|YP_002465685.1| - 4e-19 68.5 0.0 9.4e-19 67.3 0.0 1.6 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|219851253|ref|YP_002465685.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Peptidase family M28 Peptidase_M42 PF05343.14 gi|219851253|ref|YP_002465685.1| - 0.056 12.4 0.0 0.13 11.3 0.0 1.6 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase zinc_ribbon_6 PF14599.6 gi|219851255|ref|YP_002465687.1| - 0.0027 17.7 3.8 0.19 11.8 5.1 2.0 1 1 1 2 2 2 2 Zinc-ribbon Molybdop_Fe4S4 PF04879.16 gi|219851255|ref|YP_002465687.1| - 0.013 15.4 1.9 0.016 15.2 1.9 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain OrfB_Zn_ribbon PF07282.11 gi|219851255|ref|YP_002465687.1| - 0.025 14.5 1.1 0.025 14.5 1.1 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF326 PF03860.16 gi|219851255|ref|YP_002465687.1| - 2.5 8.2 7.3 0.77 9.8 1.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Peptidase_M48 PF01435.18 gi|219851256|ref|YP_002465688.1| - 7.6e-39 133.5 0.0 1.3e-38 132.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|219851256|ref|YP_002465688.1| - 6.1e-06 25.6 0.2 6.1e-06 25.6 0.2 2.8 2 1 1 3 3 3 1 BlaR1 peptidase M56 LptF_LptG PF03739.14 gi|219851256|ref|YP_002465688.1| - 0.0083 15.0 1.3 0.0083 15.0 1.3 2.2 2 0 0 2 2 2 1 Lipopolysaccharide export system permease LptF/LptG Peptidase_U49 PF10463.9 gi|219851256|ref|YP_002465688.1| - 0.054 13.3 0.1 0.55 10.0 0.0 2.1 2 0 0 2 2 2 0 Peptidase U49 Monooxygenase_B PF04744.12 gi|219851256|ref|YP_002465688.1| - 0.065 12.1 0.2 4.2 6.1 0.0 2.1 2 0 0 2 2 2 0 Monooxygenase subunit B protein DUF3754 PF12576.8 gi|219851256|ref|YP_002465688.1| - 0.13 12.2 0.1 0.28 11.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) SprT-like PF10263.9 gi|219851256|ref|YP_002465688.1| - 0.18 11.7 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF2207 PF09972.9 gi|219851256|ref|YP_002465688.1| - 0.89 8.2 10.1 1.6 7.4 0.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) PrgI PF12666.7 gi|219851256|ref|YP_002465688.1| - 1.1 10.0 6.0 20 6.0 0.1 2.5 2 0 0 2 2 2 0 PrgI family protein PspB PF06667.12 gi|219851256|ref|YP_002465688.1| - 1.6 8.9 0.0 1.6 8.9 0.0 3.2 4 0 0 4 4 4 0 Phage shock protein B Phage_holin_3_6 PF07332.11 gi|219851256|ref|YP_002465688.1| - 7.2 6.7 11.9 2.6 8.1 0.1 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1917 PF08939.10 gi|219851257|ref|YP_002465689.1| - 3e-20 73.3 0.2 4.4e-20 72.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) Ribosomal_L40e PF01020.17 gi|219851258|ref|YP_002465690.1| - 2.6e-06 27.2 5.0 2.9e-06 27.1 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-ribbon_3 PF13248.6 gi|219851258|ref|YP_002465690.1| - 0.0005 19.4 1.3 0.00062 19.1 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219851258|ref|YP_002465690.1| - 0.001 18.7 1.3 0.0017 18.0 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219851258|ref|YP_002465690.1| - 0.0016 18.5 0.9 0.0016 18.4 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.19 gi|219851258|ref|YP_002465690.1| - 0.0082 16.3 1.6 0.0095 16.1 1.6 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e DNA_RNApol_7kD PF03604.13 gi|219851258|ref|YP_002465690.1| - 0.064 13.0 5.3 0.12 12.1 5.3 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.18 gi|219851258|ref|YP_002465690.1| - 0.37 10.1 5.2 0.99 8.8 3.7 2.0 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Ham1p_like PF01725.16 gi|219851259|ref|YP_002465691.1| - 7.7e-45 153.1 0.0 8.6e-45 153.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family FeoB_C PF07664.12 gi|219851259|ref|YP_002465691.1| - 0.022 14.4 0.0 0.044 13.5 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus Peptidase_M22 PF00814.25 gi|219851260|ref|YP_002465692.1| - 5.3e-79 265.7 0.0 6.9e-79 265.3 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.22 gi|219851260|ref|YP_002465692.1| - 5e-08 32.8 0.0 7.9e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|219851260|ref|YP_002465692.1| - 1.4e-06 27.9 0.0 2.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|219851260|ref|YP_002465692.1| - 3.7e-06 26.4 0.1 7.7e-06 25.4 0.1 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|219851260|ref|YP_002465692.1| - 1.7e-05 24.9 0.2 0.00039 20.4 0.1 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|219851260|ref|YP_002465692.1| - 0.0026 17.1 0.0 0.0047 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 gi|219851260|ref|YP_002465692.1| - 0.0056 15.5 0.0 0.0077 15.0 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase WaaY PF06176.11 gi|219851260|ref|YP_002465692.1| - 0.23 11.0 0.1 0.36 10.4 0.1 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Ribosomal_S27 PF01599.19 gi|219851261|ref|YP_002465693.1| - 6.5e-19 67.8 3.6 7.4e-19 67.6 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.7 gi|219851261|ref|YP_002465693.1| - 0.00038 20.4 0.5 0.0005 20.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|219851261|ref|YP_002465693.1| - 0.00045 20.1 4.0 0.0018 18.2 4.0 1.8 1 1 0 1 1 1 1 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|219851261|ref|YP_002465693.1| - 0.00058 19.5 4.8 0.013 15.2 4.8 2.1 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain IBR PF01485.21 gi|219851261|ref|YP_002465693.1| - 0.00086 19.5 0.3 0.00086 19.5 0.3 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zinc_ribbon_2 PF13240.6 gi|219851261|ref|YP_002465693.1| - 0.002 17.8 3.3 0.067 12.9 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain GFA PF04828.14 gi|219851261|ref|YP_002465693.1| - 0.0046 17.3 1.1 0.05 14.0 0.0 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.12 gi|219851261|ref|YP_002465693.1| - 0.0047 17.1 1.2 0.007 16.5 1.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|219851261|ref|YP_002465693.1| - 0.0064 15.9 5.7 0.07 12.6 5.7 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DUF1451 PF07295.11 gi|219851261|ref|YP_002465693.1| - 0.0067 16.5 0.4 0.0067 16.5 0.4 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain RNA_POL_M_15KD PF02150.16 gi|219851261|ref|YP_002465693.1| - 0.011 15.6 0.5 0.017 15.0 0.5 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit MqsA_antitoxin PF15731.5 gi|219851261|ref|YP_002465693.1| - 0.012 15.7 0.2 0.012 15.7 0.2 1.2 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA OrfB_Zn_ribbon PF07282.11 gi|219851261|ref|YP_002465693.1| - 0.03 14.2 0.9 0.035 14.0 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|219851261|ref|YP_002465693.1| - 0.031 14.7 2.1 0.04 14.3 2.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L37e PF01907.19 gi|219851261|ref|YP_002465693.1| - 0.034 14.3 3.3 0.056 13.6 3.3 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e PknG_rubred PF16919.5 gi|219851261|ref|YP_002465693.1| - 0.061 13.5 1.0 0.066 13.4 1.0 1.2 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain NOB1_Zn_bind PF08772.11 gi|219851261|ref|YP_002465693.1| - 0.072 13.3 3.0 0.44 10.7 3.1 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1595 PF12760.7 gi|219851261|ref|YP_002465693.1| - 0.16 11.9 4.1 0.31 11.1 4.1 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|219851261|ref|YP_002465693.1| - 0.33 10.6 2.8 0.49 10.0 0.2 2.2 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_13 PF09855.9 gi|219851261|ref|YP_002465693.1| - 0.52 10.5 3.5 1.3 9.3 0.6 2.2 1 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_S24e PF01282.19 gi|219851262|ref|YP_002465694.1| - 1.7e-21 75.9 0.0 2e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|219851263|ref|YP_002465695.1| - 2.7e-35 120.7 0.0 3.9e-35 120.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|219851264|ref|YP_002465696.1| - 2.2e-11 43.7 0.2 3.1e-11 43.2 0.2 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|219851264|ref|YP_002465696.1| - 0.0037 16.8 1.7 0.0047 16.5 1.7 1.2 1 0 0 1 1 1 1 RecR protein PHF5 PF03660.14 gi|219851264|ref|YP_002465696.1| - 0.015 15.4 0.4 0.015 15.4 0.4 1.1 1 0 0 1 1 1 0 PHF5-like protein SHS2_Rpb7-N PF03876.17 gi|219851265|ref|YP_002465697.1| - 1.3e-18 67.1 0.1 2.4e-18 66.3 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|219851265|ref|YP_002465697.1| - 3.8e-11 43.2 0.0 9.2e-11 41.9 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|219851265|ref|YP_002465697.1| - 0.00093 19.4 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|219851266|ref|YP_002465698.1| - 1e-29 103.2 0.0 1.2e-29 103.0 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DUF5615 PF18480.1 gi|219851266|ref|YP_002465698.1| - 0.00052 19.7 0.4 0.0047 16.7 0.0 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF5615) DUF4411 PF14367.6 gi|219851266|ref|YP_002465698.1| - 0.008 16.1 0.3 0.1 12.5 0.0 2.3 2 1 1 3 3 3 1 Domain of unknown function (DUF4411) PIN PF01850.21 gi|219851266|ref|YP_002465698.1| - 0.065 13.7 0.0 0.1 13.1 0.0 1.5 1 1 0 1 1 1 0 PIN domain GTP_EFTU PF00009.27 gi|219851267|ref|YP_002465699.1| - 2.1e-31 109.0 0.4 1.1e-30 106.7 0.4 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|219851267|ref|YP_002465699.1| - 1.1e-30 105.8 0.6 2.8e-30 104.4 0.6 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|219851267|ref|YP_002465699.1| - 4.7e-08 33.3 2.1 7.6e-08 32.6 0.4 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|219851267|ref|YP_002465699.1| - 9.3e-07 28.9 0.4 0.0004 20.3 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1 PF01926.23 gi|219851267|ref|YP_002465699.1| - 4.2e-06 26.8 0.0 8.6e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|219851267|ref|YP_002465699.1| - 0.0018 17.8 1.3 0.37 10.3 0.1 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B cobW PF02492.19 gi|219851267|ref|YP_002465699.1| - 0.014 15.0 0.2 2.7 7.6 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|219851267|ref|YP_002465699.1| - 0.021 14.9 0.1 0.062 13.3 0.0 1.8 2 0 0 2 2 2 0 Dynamin family DnaJ_CXXCXGXG PF00684.19 gi|219851267|ref|YP_002465699.1| - 0.022 15.1 0.2 0.046 14.1 0.2 1.6 1 0 0 1 1 1 0 DnaJ central domain Nop10p PF04135.12 gi|219851267|ref|YP_002465699.1| - 0.023 14.7 0.9 0.046 13.8 0.9 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family MMR_HSR1_Xtn PF16897.5 gi|219851267|ref|YP_002465699.1| - 0.024 14.7 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|219851267|ref|YP_002465699.1| - 0.032 14.0 1.4 5.1 6.8 0.0 3.0 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation zinc-ribbons_6 PF07191.12 gi|219851267|ref|YP_002465699.1| - 0.072 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbons Septin PF00735.18 gi|219851267|ref|YP_002465699.1| - 0.13 11.5 1.2 1.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Septin OrfB_Zn_ribbon PF07282.11 gi|219851267|ref|YP_002465699.1| - 0.65 10.0 2.3 1.8 8.6 2.3 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|219851267|ref|YP_002465699.1| - 0.78 9.9 3.0 2 8.6 3.0 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|219851267|ref|YP_002465699.1| - 1.9 8.4 3.8 4.7 7.2 3.8 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NikR_C PF08753.11 gi|219851268|ref|YP_002465700.1| - 2.4e-31 107.7 2.6 2.5e-31 107.6 1.8 1.4 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|219851268|ref|YP_002465700.1| - 1.3e-08 34.4 0.0 2.5e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RMMBL PF07521.12 gi|219851268|ref|YP_002465700.1| - 0.0082 16.1 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain HicB_lk_antitox PF15919.5 gi|219851268|ref|YP_002465700.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2098 PF09871.9 gi|219851269|ref|YP_002465701.1| - 6.5e-23 80.9 0.1 7.3e-23 80.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YcaO PF02624.16 gi|219851270|ref|YP_002465702.1| - 3.6e-69 233.5 2.0 5e-69 233.0 2.0 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Hist_deacetyl PF00850.19 gi|219851271|ref|YP_002465703.1| - 3.7e-73 246.7 0.0 5.6e-73 246.1 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Glycos_transf_1 PF00534.20 gi|219851272|ref|YP_002465704.1| - 3.5e-30 104.8 0.0 1.6e-29 102.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219851272|ref|YP_002465704.1| - 3.5e-30 105.2 0.0 7.7e-30 104.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|219851272|ref|YP_002465704.1| - 5.2e-06 26.8 0.0 1.2e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|219851273|ref|YP_002465705.1| - 1.2e-114 382.8 0.1 1.4e-114 382.6 0.1 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_4 PF13692.6 gi|219851274|ref|YP_002465706.1| - 4.7e-15 56.2 0.0 1e-14 55.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219851274|ref|YP_002465706.1| - 3e-12 46.9 0.1 4.3e-12 46.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|219851274|ref|YP_002465706.1| - 2.7e-11 44.2 0.0 4.5e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|219851274|ref|YP_002465706.1| - 3.8e-11 43.2 0.0 8.9e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|219851274|ref|YP_002465706.1| - 2.1e-10 40.4 0.0 4e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Desulfoferrodox PF01880.18 gi|219851275|ref|YP_002465707.1| - 2e-19 70.0 0.4 2.7e-19 69.5 0.4 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.12 gi|219851275|ref|YP_002465707.1| - 1.6e-17 62.8 6.4 2.8e-17 62.0 6.4 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|219851275|ref|YP_002465707.1| - 0.042 14.0 0.4 0.084 13.0 0.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Lactamase_B PF00753.27 gi|219851276|ref|YP_002465708.1| - 1.6e-07 31.5 0.1 3.4e-07 30.5 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219851276|ref|YP_002465708.1| - 3.7e-05 23.3 0.0 6.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Peptidase_S51 PF03575.17 gi|219851276|ref|YP_002465708.1| - 0.13 11.9 0.0 1 9.0 0.0 2.0 2 0 0 2 2 2 0 Peptidase family S51 Flavodoxin_1 PF00258.25 gi|219851276|ref|YP_002465708.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin Rubredoxin PF00301.20 gi|219851277|ref|YP_002465709.1| - 1.3e-22 79.6 1.5 1.4e-22 79.5 1.5 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|219851277|ref|YP_002465709.1| - 2.9e-05 24.1 0.4 3.3e-05 23.9 0.4 1.1 1 0 0 1 1 1 1 PHD-finger Zn-ribbon_8 PF09723.10 gi|219851277|ref|YP_002465709.1| - 0.00065 19.8 1.1 0.0058 16.7 1.1 2.0 1 1 0 1 1 1 1 Zinc ribbon domain TFIIS_C PF01096.18 gi|219851277|ref|YP_002465709.1| - 0.0025 17.6 1.5 0.89 9.5 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-Sec23_Sec24 PF04810.15 gi|219851277|ref|YP_002465709.1| - 0.0054 16.7 0.2 1.5 8.9 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger zf-nanos PF05741.13 gi|219851277|ref|YP_002465709.1| - 0.015 15.5 0.6 3.5 7.9 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain Vps36-NZF-N PF16988.5 gi|219851277|ref|YP_002465709.1| - 0.015 14.6 0.3 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-ribbon_3 PF13248.6 gi|219851277|ref|YP_002465709.1| - 0.023 14.1 1.7 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|219851277|ref|YP_002465709.1| - 0.044 13.3 2.2 2.8 7.5 0.2 2.2 2 1 0 2 2 2 0 TFIIB zinc-binding zf-RanBP PF00641.18 gi|219851277|ref|YP_002465709.1| - 0.052 12.9 0.3 0.052 12.9 0.3 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf_UBZ PF18439.1 gi|219851277|ref|YP_002465709.1| - 0.06 12.9 0.8 3.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger ADK_lid PF05191.14 gi|219851277|ref|YP_002465709.1| - 0.063 13.3 2.4 0.35 10.9 2.4 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 gi|219851277|ref|YP_002465709.1| - 0.076 12.9 1.7 5.5 7.0 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-C2H2_4 PF13894.6 gi|219851277|ref|YP_002465709.1| - 0.1 13.5 1.3 8.8 7.5 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|219851277|ref|YP_002465709.1| - 0.11 12.3 3.8 4.8 7.0 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_6 PF13912.6 gi|219851277|ref|YP_002465709.1| - 0.11 12.5 0.5 3.9 7.6 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Elf1 PF05129.13 gi|219851277|ref|YP_002465709.1| - 0.12 12.4 0.1 2.8 8.1 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2_3 PF13878.6 gi|219851277|ref|YP_002465709.1| - 0.17 11.7 1.4 5.4 6.9 0.4 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2 PF00096.26 gi|219851277|ref|YP_002465709.1| - 0.2 12.2 1.8 7.8 7.2 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 gi|219851277|ref|YP_002465709.1| - 0.23 11.2 3.2 8.2 6.3 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|219851277|ref|YP_002465709.1| - 0.43 10.3 3.7 2 8.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rsm22 PF09243.10 gi|219851280|ref|YP_002465712.1| - 7.9e-12 45.0 0.0 1.1e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_23 PF13489.6 gi|219851280|ref|YP_002465712.1| - 0.00031 20.6 0.0 0.00054 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851280|ref|YP_002465712.1| - 0.0045 16.8 0.0 0.03 14.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851280|ref|YP_002465712.1| - 0.0098 16.6 0.0 0.023 15.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851280|ref|YP_002465712.1| - 0.09 13.4 0.0 0.21 12.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851280|ref|YP_002465712.1| - 0.1 13.4 0.0 0.36 11.6 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DOT1 PF08123.13 gi|219851280|ref|YP_002465712.1| - 0.21 11.1 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Glycos_transf_2 PF00535.26 gi|219851281|ref|YP_002465713.1| - 1.9e-31 109.2 0.0 2.7e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|219851281|ref|YP_002465713.1| - 1.9e-17 63.7 0.0 2.7e-17 63.1 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|219851281|ref|YP_002465713.1| - 1e-14 55.0 0.0 1.5e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219851281|ref|YP_002465713.1| - 0.012 16.1 0.1 0.031 14.8 0.1 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 ParA PF10609.9 gi|219851283|ref|YP_002465715.1| - 6.5e-100 333.6 0.0 7.7e-100 333.4 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|219851283|ref|YP_002465715.1| - 6.9e-16 58.5 0.0 1.9e-15 57.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|219851283|ref|YP_002465715.1| - 7.9e-10 38.9 0.1 7.8e-09 35.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|219851283|ref|YP_002465715.1| - 1.1e-08 34.7 0.1 2.1e-08 33.8 0.0 1.6 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|219851283|ref|YP_002465715.1| - 1.6e-06 27.6 0.7 3.2e-05 23.3 0.1 2.6 2 1 1 3 3 3 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|219851283|ref|YP_002465715.1| - 0.0019 17.7 0.2 0.028 13.9 0.3 2.0 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|219851283|ref|YP_002465715.1| - 0.0035 17.2 0.1 0.0052 16.7 0.1 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.6 gi|219851283|ref|YP_002465715.1| - 0.0044 16.6 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|219851283|ref|YP_002465715.1| - 0.0053 16.6 1.3 1.5 8.6 0.1 2.6 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|219851283|ref|YP_002465715.1| - 0.0054 16.2 0.0 0.017 14.6 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|219851283|ref|YP_002465715.1| - 0.017 14.9 0.1 0.031 14.1 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|219851283|ref|YP_002465715.1| - 0.027 13.7 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|219851283|ref|YP_002465715.1| - 0.028 15.0 0.1 0.057 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|219851283|ref|YP_002465715.1| - 0.028 14.1 0.1 0.29 10.9 0.0 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain MeaB PF03308.16 gi|219851283|ref|YP_002465715.1| - 0.072 12.1 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|219851283|ref|YP_002465715.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.22 gi|219851283|ref|YP_002465715.1| - 0.085 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|219851283|ref|YP_002465715.1| - 0.09 12.7 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.6 gi|219851283|ref|YP_002465715.1| - 0.16 12.2 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|219851283|ref|YP_002465715.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase VirC1 PF07015.11 gi|219851283|ref|YP_002465715.1| - 0.22 10.8 0.0 0.33 10.2 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein FeoB_associated PF12669.7 gi|219851283|ref|YP_002465715.1| - 1.2 9.6 4.8 2.9 8.4 4.8 1.6 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Response_reg PF00072.24 gi|219851284|ref|YP_002465716.1| - 3.4e-24 85.2 0.0 1.2e-23 83.4 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.6 gi|219851284|ref|YP_002465716.1| - 2.4e-18 66.8 0.1 4.7e-18 65.8 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|219851284|ref|YP_002465716.1| - 4.3e-09 37.1 0.0 9.2e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|219851284|ref|YP_002465716.1| - 3.5e-06 27.4 0.0 8.8e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 GAF domain PAS PF00989.25 gi|219851284|ref|YP_002465716.1| - 5.2e-05 23.2 0.0 0.00013 21.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|219851284|ref|YP_002465716.1| - 0.002 18.3 0.1 0.0052 17.0 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219851284|ref|YP_002465716.1| - 0.05 13.6 0.2 0.33 11.0 0.0 2.3 2 0 0 2 2 2 0 PAS domain PAS_9 PF13426.7 gi|219851284|ref|YP_002465716.1| - 0.12 12.6 0.0 1.3 9.3 0.0 2.4 2 0 0 2 2 2 0 PAS domain Glyco_transf_36 PF06165.11 gi|219851285|ref|YP_002465717.1| - 1.1e-166 552.4 0.0 4.3e-82 275.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase family 36 Glyco_hydro_36 PF17167.4 gi|219851285|ref|YP_002465717.1| - 2.5e-120 402.0 0.0 3.5e-120 401.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glycoamylase PF10091.9 gi|219851285|ref|YP_002465717.1| - 9.7e-14 51.5 0.0 2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Putative glucoamylase UvrD-helicase PF00580.21 gi|219851287|ref|YP_002465719.1| - 8.5e-60 202.9 1.1 3.4e-59 200.9 1.1 1.9 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|219851287|ref|YP_002465719.1| - 7.9e-39 134.0 0.0 7.8e-38 130.7 0.0 2.2 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|219851287|ref|YP_002465719.1| - 1.3e-38 133.4 0.2 4.2e-38 131.7 0.0 2.0 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|219851287|ref|YP_002465719.1| - 1.8e-31 109.4 0.1 5.8e-31 107.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|219851287|ref|YP_002465719.1| - 1.1e-11 44.3 0.2 2e-05 24.3 0.1 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Cas_Cas4 PF01930.17 gi|219851287|ref|YP_002465719.1| - 7.2e-10 39.2 0.0 1.7e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF83 AAA_30 PF13604.6 gi|219851287|ref|YP_002465719.1| - 3.9e-07 30.0 0.0 0.00088 19.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|219851287|ref|YP_002465719.1| - 1.6e-06 28.0 0.0 1.1 8.9 0.0 4.1 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase Exonuc_V_gamma PF04257.14 gi|219851287|ref|YP_002465719.1| - 0.011 14.0 0.0 0.018 13.3 0.0 1.3 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit AAA_11 PF13086.6 gi|219851287|ref|YP_002465719.1| - 0.026 14.3 0.0 0.055 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_12 PF13087.6 gi|219851287|ref|YP_002465719.1| - 0.033 13.8 0.0 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF1512 PF07431.12 gi|219851287|ref|YP_002465719.1| - 0.046 12.7 0.0 0.079 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1512) PDDEXK_1 PF12705.7 gi|219851291|ref|YP_002465723.1| - 1.1e-05 25.5 0.0 1.2e-05 25.4 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HRG PF16954.5 gi|219851292|ref|YP_002465724.1| - 0.003 17.9 1.1 0.003 17.9 1.1 2.4 2 0 0 2 2 2 1 Haem-transporter, endosomal/lysosomal, haem-responsive gene Glt_symporter PF03616.14 gi|219851292|ref|YP_002465724.1| - 0.12 11.0 5.9 0.15 10.7 5.9 1.1 1 0 0 1 1 1 0 Sodium/glutamate symporter DUF4868 PF16162.5 gi|219851293|ref|YP_002465725.1| - 6.1e-56 189.3 11.7 9.5e-56 188.7 11.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4868) PDDEXK_1 PF12705.7 gi|219851294|ref|YP_002465726.1| - 5.9e-20 72.2 0.1 7.5e-20 71.9 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|219851294|ref|YP_002465726.1| - 4.6e-06 26.8 0.5 5.2e-05 23.4 0.3 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF83 His_Phos_1 PF00300.22 gi|219851297|ref|YP_002465729.1| - 2e-38 132.0 0.1 7.3e-30 104.1 0.3 2.1 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) HATPase_c_4 PF13749.6 gi|219851299|ref|YP_002465731.1| - 1.1e-19 70.4 0.0 2e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|219851299|ref|YP_002465731.1| - 3.2e-13 50.1 0.0 5.7e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain DUF977 PF06163.11 gi|219851299|ref|YP_002465731.1| - 0.011 15.6 0.3 0.027 14.4 0.3 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF1707 PF08044.11 gi|219851299|ref|YP_002465731.1| - 0.031 14.3 1.1 8 6.6 0.3 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) sCache_2 PF17200.4 gi|219851300|ref|YP_002465732.1| - 1.9e-21 76.5 0.0 2.6e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|219851300|ref|YP_002465732.1| - 1.8e-19 70.1 0.0 2.2e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Cache domain zf-ACC PF17848.1 gi|219851301|ref|YP_002465733.1| - 8e-05 22.6 1.2 0.034 14.2 0.0 2.3 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_10 PF10058.9 gi|219851301|ref|YP_002465733.1| - 0.05 13.3 1.1 0.24 11.2 1.1 1.9 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1610 PF07754.11 gi|219851301|ref|YP_002465733.1| - 0.067 13.2 2.6 1.3 9.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|219851301|ref|YP_002465733.1| - 0.076 12.5 0.8 0.94 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|219851301|ref|YP_002465733.1| - 0.091 12.9 0.2 0.98 9.6 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|219851301|ref|YP_002465733.1| - 0.11 12.7 0.2 0.89 9.8 0.0 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2387 PF09526.10 gi|219851301|ref|YP_002465733.1| - 0.16 12.2 1.1 0.21 11.7 0.3 1.7 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Mu-like_Com PF10122.9 gi|219851301|ref|YP_002465733.1| - 0.22 11.0 0.6 0.95 9.0 0.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com sCache_2 PF17200.4 gi|219851302|ref|YP_002465734.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Single Cache domain 2 B12-binding PF02310.19 gi|219851304|ref|YP_002465736.1| - 1.6e-22 79.8 0.0 4.5e-22 78.3 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|219851304|ref|YP_002465736.1| - 1.7e-22 80.6 0.0 1.1e-21 77.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily CitMHS PF03600.16 gi|219851305|ref|YP_002465737.1| - 3e-28 98.9 39.4 3e-28 98.9 39.4 1.7 1 1 1 2 2 2 2 Citrate transporter Pirin PF02678.16 gi|219851306|ref|YP_002465738.1| - 7.1e-35 119.2 0.2 1.2e-34 118.5 0.2 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|219851306|ref|YP_002465738.1| - 1.4e-30 105.7 0.0 1.2e-29 102.7 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Lactamase_B PF00753.27 gi|219851307|ref|YP_002465739.1| - 1.1e-25 90.9 0.5 1.2e-25 90.6 0.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219851307|ref|YP_002465739.1| - 6.2e-06 25.9 0.0 8.5e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|219851307|ref|YP_002465739.1| - 0.0003 20.4 0.0 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|219851307|ref|YP_002465739.1| - 0.052 13.0 0.0 0.079 12.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Methyltransf_12 PF08242.12 gi|219851308|ref|YP_002465740.1| - 2.7e-09 37.7 0.0 4.4e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851308|ref|YP_002465740.1| - 4.5e-08 33.7 0.0 7.4e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851308|ref|YP_002465740.1| - 1.3e-05 25.8 0.0 2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851308|ref|YP_002465740.1| - 0.00019 21.3 0.0 0.00035 20.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851308|ref|YP_002465740.1| - 0.00085 19.1 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_28 PF02636.17 gi|219851308|ref|YP_002465740.1| - 0.16 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Ubie_methyltran PF01209.18 gi|219851308|ref|YP_002465740.1| - 0.17 11.2 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Cys_Met_Meta_PP PF01053.20 gi|219851309|ref|YP_002465741.1| - 2.2e-116 388.5 0.0 2.5e-116 388.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|219851309|ref|YP_002465741.1| - 5.5e-11 42.4 0.1 9.3e-11 41.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|219851309|ref|YP_002465741.1| - 4.2e-08 32.5 0.1 1.2e-06 27.8 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219851309|ref|YP_002465741.1| - 0.00015 21.2 0.1 0.00026 20.3 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|219851309|ref|YP_002465741.1| - 0.00059 19.1 0.0 0.00098 18.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|219851309|ref|YP_002465741.1| - 0.016 13.7 0.1 0.043 12.3 0.1 1.6 1 1 0 1 1 1 0 Methionine gamma-lyase adh_short_C2 PF13561.6 gi|219851309|ref|YP_002465741.1| - 0.069 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DUF2839 PF10999.8 gi|219851311|ref|YP_002465743.1| - 0.0093 16.3 0.4 0.01 16.2 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2839) Mcp5_PH PF12814.7 gi|219851311|ref|YP_002465743.1| - 0.072 13.2 0.1 0.073 13.2 0.1 1.1 1 0 0 1 1 1 0 Meiotic cell cortex C-terminal pleckstrin homology DUF2099 PF09872.9 gi|219851312|ref|YP_002465744.1| - 6.7e-106 353.2 1.0 7.7e-106 353.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Zip PF02535.22 gi|219851313|ref|YP_002465745.1| - 2.3e-06 27.1 22.6 4.1e-05 22.9 14.1 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter TM_helix PF05552.12 gi|219851313|ref|YP_002465745.1| - 0.024 14.6 0.1 0.024 14.6 0.1 2.8 3 0 0 3 3 3 0 Conserved TM helix DUF2252 PF10009.9 gi|219851314|ref|YP_002465746.1| - 1.8e-141 471.8 0.0 2.1e-141 471.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2252) Cupredoxin_1 PF13473.6 gi|219851315|ref|YP_002465747.1| - 1.9e-08 34.4 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain MacB_PCD PF12704.7 gi|219851316|ref|YP_002465748.1| - 0.21 11.9 2.5 0.42 10.9 2.5 1.9 1 1 0 1 1 1 0 MacB-like periplasmic core domain E1-E2_ATPase PF00122.20 gi|219851317|ref|YP_002465749.1| - 1.9e-58 197.0 4.4 4.6e-58 195.7 4.4 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|219851317|ref|YP_002465749.1| - 1.7e-48 165.7 1.4 3.1e-48 164.8 1.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|219851317|ref|YP_002465749.1| - 6.2e-14 52.2 0.0 1.6e-13 50.9 0.0 1.8 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|219851317|ref|YP_002465749.1| - 8.5e-05 22.4 1.2 0.00011 22.1 0.3 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|219851317|ref|YP_002465749.1| - 0.0047 17.4 0.0 0.01 16.2 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CoA_binding_2 PF13380.6 gi|219851317|ref|YP_002465749.1| - 0.026 15.0 0.2 0.057 13.9 0.2 1.5 1 0 0 1 1 1 0 CoA binding domain HMA PF00403.26 gi|219851318|ref|YP_002465750.1| - 8.2e-08 32.6 0.0 1.4e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2678 PF10856.8 gi|219851318|ref|YP_002465750.1| - 0.023 14.6 0.5 0.049 13.6 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2678) Holin_SPP1 PF04688.13 gi|219851318|ref|YP_002465750.1| - 0.072 13.3 1.2 0.21 11.8 1.2 1.8 1 0 0 1 1 1 0 SPP1 phage holin HMA PF00403.26 gi|219851319|ref|YP_002465751.1| - 4.8e-15 55.7 0.1 5.2e-15 55.6 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.17 gi|219851319|ref|YP_002465751.1| - 0.0088 15.9 0.0 0.012 15.4 0.0 1.3 1 1 0 1 1 1 1 Sulfurtransferase TusA Pro_Al_protease PF02983.14 gi|219851319|ref|YP_002465751.1| - 0.021 14.9 0.1 0.026 14.6 0.1 1.2 1 0 0 1 1 1 0 Alpha-lytic protease prodomain HTH_24 PF13412.6 gi|219851320|ref|YP_002465752.1| - 2.5e-12 46.1 0.0 2.9e-08 33.2 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|219851320|ref|YP_002465752.1| - 1.9e-10 40.7 0.2 0.0003 20.8 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain PaaX PF07848.12 gi|219851320|ref|YP_002465752.1| - 6.2e-06 26.3 0.0 1.2e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein MarR PF01047.22 gi|219851320|ref|YP_002465752.1| - 4.3e-05 23.3 0.1 0.00057 19.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|219851320|ref|YP_002465752.1| - 0.00057 19.8 0.0 0.031 14.2 0.0 2.3 2 0 0 2 2 2 1 HTH domain GntR PF00392.21 gi|219851320|ref|YP_002465752.1| - 0.00079 19.0 0.0 0.087 12.5 0.0 2.5 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|219851320|ref|YP_002465752.1| - 0.0023 18.1 0.0 0.44 10.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|219851320|ref|YP_002465752.1| - 0.0049 16.7 0.0 0.17 11.7 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family RPA_C PF08784.11 gi|219851320|ref|YP_002465752.1| - 0.012 16.3 0.0 0.32 11.7 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal Penicillinase_R PF03965.16 gi|219851320|ref|YP_002465752.1| - 0.013 15.9 0.0 0.037 14.4 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor HTH_AsnC-type PF13404.6 gi|219851320|ref|YP_002465752.1| - 0.013 15.3 0.1 0.058 13.2 0.0 2.2 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|219851320|ref|YP_002465752.1| - 0.013 15.4 0.0 0.24 11.3 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|219851320|ref|YP_002465752.1| - 0.014 15.8 0.0 0.091 13.1 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator BiPBP_C PF06832.12 gi|219851320|ref|YP_002465752.1| - 0.017 15.1 0.0 0.075 13.1 0.0 1.9 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family PadR PF03551.14 gi|219851320|ref|YP_002465752.1| - 0.045 13.7 0.0 0.1 12.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GerE PF00196.19 gi|219851320|ref|YP_002465752.1| - 0.047 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 gi|219851320|ref|YP_002465752.1| - 0.052 13.6 0.1 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|219851320|ref|YP_002465752.1| - 0.068 13.4 0.0 0.22 11.8 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4364 PF14277.6 gi|219851320|ref|YP_002465752.1| - 0.091 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) NAD_kinase PF01513.21 gi|219851321|ref|YP_002465753.1| - 2.4e-47 161.5 0.1 3e-47 161.2 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|219851321|ref|YP_002465753.1| - 1.4e-06 27.9 0.0 4.1e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|219851321|ref|YP_002465753.1| - 1.7e-05 24.8 0.2 3.2e-05 23.9 0.2 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain PALP PF00291.25 gi|219851322|ref|YP_002465754.1| - 2.5e-47 161.7 0.0 3.1e-47 161.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPR_2 PF07719.17 gi|219851323|ref|YP_002465755.1| - 2.9e-19 67.6 7.9 4.7e-05 23.2 1.5 5.3 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219851323|ref|YP_002465755.1| - 8.2e-14 51.1 8.7 0.032 15.0 0.2 4.9 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219851323|ref|YP_002465755.1| - 1.8e-13 50.4 6.0 6.1e-06 26.3 0.2 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219851323|ref|YP_002465755.1| - 1.9e-12 46.4 9.7 4.3e-05 23.2 1.5 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219851323|ref|YP_002465755.1| - 2.9e-12 47.0 12.2 8.8e-08 32.7 3.7 3.5 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219851323|ref|YP_002465755.1| - 5.8e-11 42.8 2.3 7.8e-07 29.5 0.3 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219851323|ref|YP_002465755.1| - 6.9e-09 35.2 4.7 0.024 14.8 0.8 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219851323|ref|YP_002465755.1| - 4.5e-08 32.6 10.7 0.27 11.0 0.0 5.4 4 2 2 6 6 6 4 TPR repeat TPR_17 PF13431.6 gi|219851323|ref|YP_002465755.1| - 8.2e-07 29.0 13.5 0.015 15.7 0.1 5.5 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219851323|ref|YP_002465755.1| - 5.6e-06 26.6 4.0 1.3 9.3 0.0 3.4 3 1 0 3 3 3 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|219851323|ref|YP_002465755.1| - 0.0012 17.9 0.0 0.91 8.4 0.0 2.4 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|219851323|ref|YP_002465755.1| - 0.011 15.9 0.7 0.37 11.0 0.2 2.4 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 gi|219851323|ref|YP_002465755.1| - 0.054 14.1 8.8 1.2 9.9 0.3 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF418 PF04235.12 gi|219851323|ref|YP_002465755.1| - 0.094 12.6 0.2 0.15 12.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF418) PBP_sp32 PF07222.12 gi|219851323|ref|YP_002465755.1| - 0.23 10.9 0.1 0.34 10.3 0.1 1.1 1 0 0 1 1 1 0 Proacrosin binding protein sp32 BTAD PF03704.17 gi|219851323|ref|YP_002465755.1| - 0.53 10.7 2.8 2.2 8.7 0.2 2.4 2 1 0 2 2 2 0 Bacterial transcriptional activator domain TPR_7 PF13176.6 gi|219851323|ref|YP_002465755.1| - 0.73 10.0 4.2 1e+02 3.3 0.1 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|219851323|ref|YP_002465755.1| - 4 7.4 9.7 4.1 7.4 1.3 3.8 5 0 0 5 5 5 0 Tetratricopeptide repeat CPBP PF02517.16 gi|219851324|ref|YP_002465756.1| - 0.0066 16.8 1.0 0.0073 16.6 1.0 1.2 1 0 0 1 1 1 1 CPBP intramembrane metalloprotease Pyr_redox_2 PF07992.14 gi|219851325|ref|YP_002465757.1| - 1.1e-42 146.2 0.0 1.4e-42 145.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|219851325|ref|YP_002465757.1| - 9.1e-20 71.0 0.0 1.6e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|219851325|ref|YP_002465757.1| - 2.3e-10 40.9 0.0 5.2e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|219851325|ref|YP_002465757.1| - 5.3e-07 29.2 0.0 1.9e-05 24.1 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|219851325|ref|YP_002465757.1| - 0.0019 17.4 0.1 0.011 14.9 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|219851325|ref|YP_002465757.1| - 0.017 15.4 2.5 0.077 13.2 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|219851325|ref|YP_002465757.1| - 0.067 11.9 0.0 7.7 5.1 0.0 2.3 2 0 0 2 2 2 0 HI0933-like protein 3HCDH_N PF02737.18 gi|219851325|ref|YP_002465757.1| - 0.085 12.7 0.2 4.8 7.0 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|219851325|ref|YP_002465757.1| - 0.15 11.3 0.2 3.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Thi4 family PAS_4 PF08448.10 gi|219851326|ref|YP_002465758.1| - 6.2e-43 145.5 0.1 1.5e-17 63.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|219851326|ref|YP_002465758.1| - 1.6e-32 111.8 0.1 2.3e-16 59.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|219851326|ref|YP_002465758.1| - 2e-31 108.3 0.2 8.3e-14 51.6 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|219851326|ref|YP_002465758.1| - 1.8e-26 92.8 0.0 5.1e-26 91.4 0.0 1.8 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219851326|ref|YP_002465758.1| - 5.4e-26 90.7 0.1 1.6e-14 53.9 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|219851326|ref|YP_002465758.1| - 2.2e-16 59.4 0.0 5.8e-07 29.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|219851326|ref|YP_002465758.1| - 1.9e-13 50.2 2.4 5.7e-11 42.3 0.1 3.0 2 0 0 2 2 2 2 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|219851326|ref|YP_002465758.1| - 1.7e-09 37.9 0.0 0.0019 18.3 0.0 3.2 2 1 0 2 2 2 2 PAS fold PAS_10 PF13596.6 gi|219851326|ref|YP_002465758.1| - 9.3e-08 32.6 0.1 0.00082 19.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.6 gi|219851326|ref|YP_002465758.1| - 0.00012 21.9 0.0 0.00024 20.9 0.0 1.5 1 0 0 1 1 1 1 GHKL domain MEKHLA PF08670.11 gi|219851326|ref|YP_002465758.1| - 0.011 15.6 0.3 0.035 14.0 0.0 1.9 2 0 0 2 2 2 0 MEKHLA domain PAS_2 PF08446.11 gi|219851326|ref|YP_002465758.1| - 0.024 15.3 0.0 1.7 9.4 0.0 2.7 2 0 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.6 gi|219851326|ref|YP_002465758.1| - 0.029 14.3 0.0 0.071 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MASE3 PF17159.4 gi|219851326|ref|YP_002465758.1| - 0.031 13.9 18.8 0.012 15.3 15.7 1.8 1 1 1 2 2 2 0 Membrane-associated sensor domain MLTR_LBD PF17765.1 gi|219851326|ref|YP_002465758.1| - 0.062 13.4 0.1 1.8 8.6 0.0 3.0 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain OmpH PF03938.14 gi|219851326|ref|YP_002465758.1| - 2.8 8.3 7.9 14 6.0 2.7 2.6 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) YebO PF13974.6 gi|219851326|ref|YP_002465758.1| - 3.1 7.9 5.6 18 5.5 1.3 3.6 3 0 0 3 3 3 0 YebO-like protein KxDL PF10241.9 gi|219851326|ref|YP_002465758.1| - 4.5 7.6 9.0 17 5.8 0.0 3.5 3 0 0 3 3 3 0 Uncharacterized conserved protein RyR PF02026.16 gi|219851327|ref|YP_002465759.1| - 1.1e-12 47.9 0.0 1.8e-10 40.9 0.0 2.4 1 1 1 2 2 2 1 RyR domain AAA PF00004.29 gi|219851327|ref|YP_002465759.1| - 0.00041 20.8 0.0 0.0013 19.2 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|219851327|ref|YP_002465759.1| - 0.0021 17.6 0.0 0.0036 16.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|219851327|ref|YP_002465759.1| - 0.0038 17.6 0.1 0.098 13.0 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|219851327|ref|YP_002465759.1| - 0.019 15.2 0.0 0.11 12.8 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|219851327|ref|YP_002465759.1| - 0.019 14.9 0.0 0.14 12.1 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|219851327|ref|YP_002465759.1| - 0.089 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_14 PF13173.6 gi|219851327|ref|YP_002465759.1| - 0.2 11.7 0.0 0.55 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|219851327|ref|YP_002465759.1| - 0.21 11.7 0.0 0.46 10.6 0.0 1.5 1 0 0 1 1 1 0 Torsin TetR_N PF00440.23 gi|219851328|ref|YP_002465760.1| - 2.2e-17 62.6 0.2 5.9e-17 61.2 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|219851328|ref|YP_002465760.1| - 0.0098 16.0 0.1 0.021 15.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_29 PF17938.1 gi|219851328|ref|YP_002465760.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|219851328|ref|YP_002465760.1| - 0.062 13.6 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain FMN_red PF03358.15 gi|219851329|ref|YP_002465761.1| - 3.5e-24 85.3 0.0 5.2e-24 84.7 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219851329|ref|YP_002465761.1| - 9.8e-11 41.7 0.0 1.3e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|219851330|ref|YP_002465762.1| - 2e-20 73.1 0.0 2.5e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219851330|ref|YP_002465762.1| - 1.3e-07 31.5 0.0 2.7e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold FAD_binding_8 PF08022.12 gi|219851332|ref|YP_002465764.1| - 0.0052 16.9 0.0 0.0075 16.3 0.0 1.3 1 0 0 1 1 1 1 FAD-binding domain FAD_binding_6 PF00970.24 gi|219851332|ref|YP_002465764.1| - 0.14 12.5 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain GSDH PF07995.11 gi|219851333|ref|YP_002465765.1| - 4.5e-27 95.2 0.0 7.2e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase CBM_6 PF03422.15 gi|219851333|ref|YP_002465765.1| - 6.3e-14 52.3 0.6 6.3e-14 52.3 0.6 2.8 2 0 0 2 2 2 1 Carbohydrate binding module (family 6) Cupredoxin_1 PF13473.6 gi|219851333|ref|YP_002465765.1| - 8.5e-10 38.7 0.2 2.3e-09 37.3 0.2 1.8 1 0 0 1 1 1 1 Cupredoxin-like domain CBM_35 PF16990.5 gi|219851333|ref|YP_002465765.1| - 3.3e-09 37.0 0.1 3.3e-09 37.0 0.1 2.4 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) Copper-bind PF00127.20 gi|219851333|ref|YP_002465765.1| - 3.3e-08 33.9 0.1 8e-08 32.6 0.1 1.7 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF5010_C PF18099.1 gi|219851333|ref|YP_002465765.1| - 2.3e-06 27.7 0.1 8.8e-06 25.8 0.1 2.1 1 0 0 1 1 1 1 DUF5010 C-terminal domain Cu-oxidase_2 PF07731.14 gi|219851333|ref|YP_002465765.1| - 0.01 15.6 1.3 2.1 8.1 0.8 3.0 3 0 0 3 3 3 1 Multicopper oxidase fn3_5 PF06280.12 gi|219851333|ref|YP_002465765.1| - 2.2 9.0 9.8 0.16 12.7 4.0 2.1 2 0 0 2 2 2 0 Fn3-like domain Aminotran_4 PF01063.19 gi|219851335|ref|YP_002465767.1| - 1.7e-55 188.3 0.0 2e-55 188.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV GATase_3 PF07685.14 gi|219851336|ref|YP_002465768.1| - 8.4e-37 126.7 0.0 3.2e-36 124.8 0.0 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|219851336|ref|YP_002465768.1| - 2.1e-17 63.6 0.9 2.2e-11 43.9 0.1 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|219851336|ref|YP_002465768.1| - 1.2e-15 57.6 0.0 1.9e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Oxidored_nitro PF00148.19 gi|219851337|ref|YP_002465769.1| - 2.1e-16 59.7 0.1 2.9e-16 59.2 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Mur_ligase_M PF08245.12 gi|219851338|ref|YP_002465770.1| - 0.019 15.0 0.4 0.033 14.2 0.4 1.4 1 0 0 1 1 1 0 Mur ligase middle domain CbiA PF01656.23 gi|219851338|ref|YP_002465770.1| - 1.2 9.2 3.1 3 7.9 0.3 2.6 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain CbiX PF01903.17 gi|219851339|ref|YP_002465771.1| - 7.5e-22 77.7 0.0 8.7e-22 77.5 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|219851339|ref|YP_002465771.1| - 1e-05 25.0 0.0 1.1e-05 25.0 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|219851339|ref|YP_002465771.1| - 0.069 12.2 0.0 0.089 11.9 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Hjc PF01870.18 gi|219851340|ref|YP_002465772.1| - 0.00013 21.9 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Dus PF01207.17 gi|219851341|ref|YP_002465773.1| - 6.8e-07 28.7 0.0 4.1e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) CitG PF01874.16 gi|219851342|ref|YP_002465774.1| - 7.3e-67 226.0 1.6 8.3e-67 225.8 1.6 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|219851343|ref|YP_002465775.1| - 1.6e-43 148.5 0.0 1.8e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) NosD PF05048.13 gi|219851344|ref|YP_002465776.1| - 2.7e-37 128.3 14.4 5.9e-37 127.2 14.4 1.6 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219851344|ref|YP_002465776.1| - 2.2e-15 56.9 22.5 2.2e-15 56.9 22.5 2.0 2 0 0 2 2 2 1 Right handed beta helix region DUF5010_C PF18099.1 gi|219851344|ref|YP_002465776.1| - 0.00017 21.7 0.4 0.00049 20.2 0.1 2.0 2 0 0 2 2 2 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219851344|ref|YP_002465776.1| - 0.0035 17.6 0.4 0.011 16.0 0.4 1.9 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) Arc_PepC_II PF06847.11 gi|219851345|ref|YP_002465777.1| - 4.5e-19 68.7 0.0 8.4e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|219851345|ref|YP_002465777.1| - 1.3e-08 35.2 9.8 2.4e-08 34.3 9.8 1.5 1 0 0 1 1 1 1 Type IV leader peptidase family PRA-CH PF01502.18 gi|219851346|ref|YP_002465778.1| - 5.4e-34 115.9 0.6 7.1e-34 115.5 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Auxin_inducible PF02519.14 gi|219851346|ref|YP_002465778.1| - 0.025 14.8 0.1 6.8 6.9 0.0 2.2 1 1 1 2 2 2 0 Auxin responsive protein DUF3239 PF11580.8 gi|219851346|ref|YP_002465778.1| - 0.028 14.7 0.0 0.037 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3239) T2SSE PF00437.20 gi|219851347|ref|YP_002465779.1| - 5.5e-10 38.8 0.2 1.1e-09 37.8 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|219851347|ref|YP_002465779.1| - 4.2e-06 27.3 0.0 1.3e-05 25.7 0.0 1.9 1 0 0 1 1 1 1 PIN domain AAA_5 PF07728.14 gi|219851347|ref|YP_002465779.1| - 1.3e-05 25.2 0.0 2.6e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|219851347|ref|YP_002465779.1| - 2.4e-05 24.8 0.0 5.1e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|219851347|ref|YP_002465779.1| - 0.00016 21.3 0.0 0.0044 16.5 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|219851347|ref|YP_002465779.1| - 0.00056 19.9 0.0 0.0031 17.5 0.0 2.2 2 1 1 3 3 2 1 NTPase AAA_25 PF13481.6 gi|219851347|ref|YP_002465779.1| - 0.00084 19.0 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|219851347|ref|YP_002465779.1| - 0.0021 17.8 0.1 0.01 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|219851347|ref|YP_002465779.1| - 0.0022 17.3 0.0 0.0045 16.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.12 gi|219851347|ref|YP_002465779.1| - 0.0029 17.5 0.0 0.0066 16.4 0.0 1.6 1 0 0 1 1 1 1 NACHT domain TsaE PF02367.17 gi|219851347|ref|YP_002465779.1| - 0.0038 17.2 0.0 0.009 16.0 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|219851347|ref|YP_002465779.1| - 0.006 17.0 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PIN_4 PF13638.6 gi|219851347|ref|YP_002465779.1| - 0.0062 16.8 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|219851347|ref|YP_002465779.1| - 0.0078 16.0 0.3 0.032 14.1 0.1 2.2 2 0 0 2 2 2 1 KH domain AAA_22 PF13401.6 gi|219851347|ref|YP_002465779.1| - 0.011 16.0 0.0 0.026 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|219851347|ref|YP_002465779.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|219851347|ref|YP_002465779.1| - 0.012 16.1 0.0 0.057 13.9 0.0 2.1 2 0 0 2 2 2 0 ABC transporter IstB_IS21 PF01695.17 gi|219851347|ref|YP_002465779.1| - 0.013 15.3 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Thymidylate_kin PF02223.17 gi|219851347|ref|YP_002465779.1| - 0.013 15.2 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase KH_2 PF07650.17 gi|219851347|ref|YP_002465779.1| - 0.018 14.8 0.9 0.068 13.0 0.9 2.0 1 0 0 1 1 1 0 KH domain AAA_18 PF13238.6 gi|219851347|ref|YP_002465779.1| - 0.024 15.2 0.0 0.059 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|219851347|ref|YP_002465779.1| - 0.03 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_29 PF13555.6 gi|219851347|ref|YP_002465779.1| - 0.047 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|219851347|ref|YP_002465779.1| - 0.049 13.4 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|219851347|ref|YP_002465779.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|219851347|ref|YP_002465779.1| - 0.061 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|219851347|ref|YP_002465779.1| - 0.064 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|219851347|ref|YP_002465779.1| - 0.11 12.1 0.2 0.41 10.2 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DnaB_C PF03796.15 gi|219851347|ref|YP_002465779.1| - 0.12 11.7 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain NB-ARC PF00931.22 gi|219851347|ref|YP_002465779.1| - 0.12 11.5 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|219851347|ref|YP_002465779.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein tRNA-synt_1 PF00133.22 gi|219851348|ref|YP_002465780.1| - 3.4e-51 174.2 0.0 1.1e-44 152.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|219851348|ref|YP_002465780.1| - 1.5e-21 76.6 2.3 7.6e-08 31.5 0.2 4.0 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|219851348|ref|YP_002465780.1| - 3.3e-20 72.6 0.2 7e-20 71.5 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|219851348|ref|YP_002465780.1| - 9.9e-07 28.4 0.1 0.0048 16.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|219851348|ref|YP_002465780.1| - 3.8e-06 26.1 0.0 0.004 16.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|219851348|ref|YP_002465780.1| - 6e-05 22.6 0.1 0.00014 21.4 0.1 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF5611 PF18446.1 gi|219851349|ref|YP_002465781.1| - 9.7e-32 109.9 0.1 1.1e-31 109.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF4732 PF15876.5 gi|219851349|ref|YP_002465781.1| - 0.1 12.7 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4732) PAC2 PF09754.9 gi|219851350|ref|YP_002465782.1| - 4.8e-44 150.9 0.2 5.6e-44 150.7 0.2 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.12 gi|219851351|ref|YP_002465783.1| - 6.9e-43 145.3 0.1 7.9e-43 145.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) Radical_SAM PF04055.21 gi|219851352|ref|YP_002465784.1| - 6.5e-13 49.4 0.0 9.7e-12 45.6 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|219851352|ref|YP_002465784.1| - 3.1e-09 37.0 0.0 5.6e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|219851352|ref|YP_002465784.1| - 1.1e-07 32.2 0.0 2.8e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain tRNA-synt_1g PF09334.11 gi|219851353|ref|YP_002465785.1| - 3.6e-150 500.1 0.0 4.4e-150 499.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|219851353|ref|YP_002465785.1| - 3.2e-26 91.3 0.0 6.2e-26 90.3 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|219851353|ref|YP_002465785.1| - 1.2e-16 60.2 0.5 3.6e-08 32.2 0.4 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|219851353|ref|YP_002465785.1| - 4.5e-15 55.9 0.1 6.9e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|219851353|ref|YP_002465785.1| - 6.9e-13 48.6 0.0 1.4e-09 37.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|219851353|ref|YP_002465785.1| - 0.021 13.8 0.0 0.37 9.6 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|219851353|ref|YP_002465785.1| - 0.19 11.7 6.3 6.4 6.9 6.3 2.3 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|219851353|ref|YP_002465785.1| - 0.35 10.3 7.1 3.3 7.2 2.0 2.9 1 1 1 2 2 2 0 zinc-ribbon domain HEAT_2 PF13646.6 gi|219851355|ref|YP_002465787.1| - 1.8e-43 146.8 6.5 1.2e-22 80.1 0.1 3.1 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|219851355|ref|YP_002465787.1| - 3.4e-25 86.0 0.0 0.0006 19.9 0.0 5.8 6 0 0 6 6 6 5 HEAT repeat HEAT_PBS PF03130.16 gi|219851355|ref|YP_002465787.1| - 5.9e-21 73.0 12.6 0.0001 22.6 0.1 5.6 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|219851355|ref|YP_002465787.1| - 6.5e-12 45.7 6.7 0.025 15.1 0.0 5.9 4 2 2 6 6 6 5 HEAT-like repeat Arm PF00514.23 gi|219851355|ref|YP_002465787.1| - 4.3e-08 32.9 1.4 0.0078 16.2 0.0 5.7 4 1 2 6 6 6 1 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.7 gi|219851355|ref|YP_002465787.1| - 5.5e-06 26.9 0.0 3.6 8.3 0.0 4.0 3 1 1 4 4 4 2 Vacuolar 14 Fab1-binding region Cnd1 PF12717.7 gi|219851355|ref|YP_002465787.1| - 3.1e-05 24.1 0.0 0.15 12.1 0.0 3.5 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|219851355|ref|YP_002465787.1| - 0.0011 17.6 0.0 3.8 6.0 0.0 3.4 1 1 0 3 3 3 2 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|219851355|ref|YP_002465787.1| - 0.0023 18.0 0.0 2 8.5 0.0 2.9 1 1 3 4 4 4 2 Aconitate B N-terminal domain Vitellogenin_N PF01347.22 gi|219851355|ref|YP_002465787.1| - 0.067 11.6 0.0 2.1 6.7 0.0 2.0 1 1 1 2 2 2 0 Lipoprotein amino terminal region UPF0058 PF01893.16 gi|219851356|ref|YP_002465788.1| - 1.8e-25 89.0 0.4 2e-25 88.9 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Toprim_4 PF13662.6 gi|219851357|ref|YP_002465789.1| - 1.5e-15 57.4 0.3 4.2e-15 56.0 0.3 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|219851357|ref|YP_002465789.1| - 3e-06 27.6 0.0 6.4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|219851357|ref|YP_002465789.1| - 0.00079 19.6 0.6 0.0092 16.2 0.4 2.7 2 1 0 2 2 2 1 Toprim domain DUF4366 PF14283.6 gi|219851358|ref|YP_002465790.1| - 1.8 8.6 0.0 1.8 8.6 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4366) MethyltransfD12 PF02086.15 gi|219851361|ref|YP_002465793.1| - 4.1e-58 197.1 0.0 4.7e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Fer4_13 PF13370.6 gi|219851362|ref|YP_002465794.1| - 1.4e-23 83.2 3.9 1.7e-23 82.9 3.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|219851362|ref|YP_002465794.1| - 4.7e-18 65.7 3.3 5.3e-18 65.5 3.3 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|219851362|ref|YP_002465794.1| - 5.7e-05 22.8 5.8 0.00052 19.7 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219851362|ref|YP_002465794.1| - 0.00021 21.3 5.1 0.00089 19.3 5.5 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|219851362|ref|YP_002465794.1| - 0.013 15.6 3.7 0.026 14.6 3.7 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_16 PF13484.6 gi|219851362|ref|YP_002465794.1| - 0.017 16.1 5.8 0.13 13.2 4.9 2.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|219851362|ref|YP_002465794.1| - 0.019 15.5 4.5 0.019 15.5 4.5 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851362|ref|YP_002465794.1| - 0.032 14.3 1.7 0.032 14.3 1.7 2.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219851362|ref|YP_002465794.1| - 0.061 13.5 8.4 0.56 10.4 8.4 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851362|ref|YP_002465794.1| - 0.11 12.7 7.4 0.13 12.4 4.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851362|ref|YP_002465794.1| - 0.19 12.2 6.8 0.37 11.3 6.8 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Na_H_Exchanger PF00999.21 gi|219851363|ref|YP_002465795.1| - 1.9e-65 221.2 51.3 2.4e-65 220.8 51.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF3488 PF11992.8 gi|219851363|ref|YP_002465795.1| - 6.7 5.6 20.7 0.011 14.8 7.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3488) COX1 PF00115.20 gi|219851364|ref|YP_002465796.1| - 0.06 12.2 1.6 0.072 11.9 1.6 1.1 1 0 0 1 1 1 0 Cytochrome C and Quinol oxidase polypeptide I Lactate_perm PF02652.14 gi|219851365|ref|YP_002465797.1| - 1e-49 169.7 48.8 5.3e-49 167.3 48.8 1.8 1 1 0 1 1 1 1 L-lactate permease TMEM132D_C PF15706.5 gi|219851365|ref|YP_002465797.1| - 0.23 11.3 0.6 0.67 9.8 0.6 1.7 1 0 0 1 1 1 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term ABC_tran PF00005.27 gi|219851367|ref|YP_002465799.1| - 5.3e-23 82.1 0.0 7e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851367|ref|YP_002465799.1| - 7.3e-08 32.6 0.3 0.0027 17.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CLP1_P PF16575.5 gi|219851367|ref|YP_002465799.1| - 2.5e-05 24.1 0.0 4.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_15 PF13175.6 gi|219851367|ref|YP_002465799.1| - 0.00031 20.6 0.1 0.3 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|219851367|ref|YP_002465799.1| - 0.0043 16.0 0.2 0.0077 15.2 0.2 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_23 PF13476.6 gi|219851367|ref|YP_002465799.1| - 0.0085 16.6 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219851367|ref|YP_002465799.1| - 0.019 14.7 0.2 0.034 13.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RecA PF00154.21 gi|219851367|ref|YP_002465799.1| - 0.023 14.2 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_33 PF13671.6 gi|219851367|ref|YP_002465799.1| - 0.024 14.8 0.0 0.034 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|219851367|ref|YP_002465799.1| - 0.04 13.7 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Lum_binding PF00677.17 gi|219851367|ref|YP_002465799.1| - 0.069 13.1 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Lumazine binding domain AAA_24 PF13479.6 gi|219851367|ref|YP_002465799.1| - 0.086 12.5 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|219851367|ref|YP_002465799.1| - 0.1 12.3 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|219851367|ref|YP_002465799.1| - 0.11 12.9 0.1 0.31 11.5 0.1 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|219851367|ref|YP_002465799.1| - 0.14 12.0 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|219851367|ref|YP_002465799.1| - 0.24 10.0 1.3 6.4 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Flavodoxin_4 PF12682.7 gi|219851369|ref|YP_002465801.1| - 9.6e-09 35.1 0.2 1.3e-07 31.4 0.2 2.0 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|219851369|ref|YP_002465801.1| - 2.1e-06 28.0 0.0 0.0057 16.9 0.0 2.1 2 0 0 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|219851369|ref|YP_002465801.1| - 3.4e-06 26.8 0.0 0.0071 16.0 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.15 gi|219851369|ref|YP_002465801.1| - 0.00023 20.9 0.0 0.00027 20.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Fer4 PF00037.27 gi|219851370|ref|YP_002465802.1| - 8.9e-12 44.3 10.1 4.7e-08 32.5 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851370|ref|YP_002465802.1| - 2.5e-07 31.1 5.0 0.00018 22.0 1.0 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851370|ref|YP_002465802.1| - 2.6e-07 30.4 11.0 8.3e-07 28.8 2.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219851370|ref|YP_002465802.1| - 2.6e-07 30.7 3.4 6.8e-07 29.3 3.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219851370|ref|YP_002465802.1| - 3.4e-07 30.3 3.6 8.5e-07 29.0 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851370|ref|YP_002465802.1| - 2.5e-06 28.3 3.0 0.035 15.0 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219851370|ref|YP_002465802.1| - 4e-06 26.9 2.9 9.5e-06 25.7 2.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851370|ref|YP_002465802.1| - 0.0002 21.3 2.1 0.0002 21.3 2.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219851370|ref|YP_002465802.1| - 0.00038 20.9 1.3 0.033 14.7 0.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219851370|ref|YP_002465802.1| - 0.0028 18.3 10.6 0.018 15.8 6.8 3.0 2 1 1 3 3 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|219851370|ref|YP_002465802.1| - 0.042 14.4 2.5 0.042 14.4 2.5 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219851370|ref|YP_002465802.1| - 0.12 12.9 6.2 0.43 11.1 2.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|219851370|ref|YP_002465802.1| - 0.15 12.1 5.6 1 9.5 0.2 3.0 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_22 PF17179.4 gi|219851370|ref|YP_002465802.1| - 0.42 11.5 5.8 0.58 11.0 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851370|ref|YP_002465802.1| - 0.5 11.4 15.0 1.7 9.7 4.8 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain GAF_2 PF13185.6 gi|219851372|ref|YP_002465804.1| - 3.2e-25 89.0 0.0 5.5e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|219851372|ref|YP_002465804.1| - 1.3e-22 79.9 0.1 3.9e-22 78.3 0.1 1.9 2 0 0 2 2 2 1 PAS fold Response_reg PF00072.24 gi|219851372|ref|YP_002465804.1| - 1.3e-19 70.4 0.0 4.2e-19 68.8 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219851372|ref|YP_002465804.1| - 5.9e-13 49.3 0.3 2e-12 47.6 0.2 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219851372|ref|YP_002465804.1| - 1.7e-06 28.2 0.0 7.6e-05 22.9 0.0 3.0 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.6 gi|219851372|ref|YP_002465804.1| - 0.00043 20.1 0.0 0.003 17.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|219851372|ref|YP_002465804.1| - 0.0023 17.6 0.0 0.0062 16.2 0.0 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_4 PF08448.10 gi|219851372|ref|YP_002465804.1| - 0.014 15.6 0.0 0.04 14.2 0.0 1.8 1 0 0 1 1 1 0 PAS fold HATPase_c_2 PF13581.6 gi|219851372|ref|YP_002465804.1| - 0.018 15.0 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS PF00989.25 gi|219851372|ref|YP_002465804.1| - 0.062 13.3 0.1 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 PAS fold GAF_3 PF13492.6 gi|219851372|ref|YP_002465804.1| - 0.083 13.2 0.0 0.65 10.4 0.0 2.2 2 0 0 2 2 2 0 GAF domain DUF1294 PF06961.13 gi|219851373|ref|YP_002465805.1| - 1.2e-22 79.9 0.1 2e-22 79.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) Methyltransf_25 PF13649.6 gi|219851374|ref|YP_002465806.1| - 5.2e-18 65.5 0.0 8.2e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851374|ref|YP_002465806.1| - 7.6e-15 55.5 0.1 3.3e-14 53.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851374|ref|YP_002465806.1| - 7e-13 48.6 0.0 1.3e-12 47.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851374|ref|YP_002465806.1| - 1.9e-12 47.7 0.0 2.9e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|219851374|ref|YP_002465806.1| - 8.4e-11 41.6 0.0 1.7e-10 40.6 0.0 1.4 2 0 0 2 2 2 1 O-methyltransferase domain Ubie_methyltran PF01209.18 gi|219851374|ref|YP_002465806.1| - 2.8e-10 39.9 0.0 3.2e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|219851374|ref|YP_002465806.1| - 2.9e-09 37.0 0.0 4.1e-09 36.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|219851374|ref|YP_002465806.1| - 3e-07 30.1 0.0 9.5e-07 28.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_PK PF05891.12 gi|219851374|ref|YP_002465806.1| - 2.2e-05 24.1 0.0 3.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.11 gi|219851374|ref|YP_002465806.1| - 0.00018 21.2 0.0 0.00025 20.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|219851374|ref|YP_002465806.1| - 0.00062 18.9 0.0 0.0008 18.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|219851374|ref|YP_002465806.1| - 0.0025 17.1 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.9 gi|219851374|ref|YP_002465806.1| - 0.014 15.2 0.0 0.033 13.9 0.0 1.6 2 0 0 2 2 2 0 Lysine methyltransferase GidB PF02527.15 gi|219851374|ref|YP_002465806.1| - 0.05 12.9 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G GCD14 PF08704.10 gi|219851374|ref|YP_002465806.1| - 0.053 13.2 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.6 gi|219851374|ref|YP_002465806.1| - 0.064 13.2 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|219851374|ref|YP_002465806.1| - 0.19 11.7 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Fer4_5 PF12801.7 gi|219851375|ref|YP_002465807.1| - 4.5e-12 45.7 7.0 1.4e-10 40.9 0.2 5.6 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219851375|ref|YP_002465807.1| - 3.7e-06 27.0 25.0 0.00027 21.1 14.1 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219851375|ref|YP_002465807.1| - 5e-06 27.0 17.8 0.011 16.4 3.3 4.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219851375|ref|YP_002465807.1| - 3.9e-05 23.8 9.2 3.9e-05 23.8 9.2 3.5 3 2 2 5 5 5 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219851375|ref|YP_002465807.1| - 0.00018 21.2 29.7 0.013 15.3 2.9 5.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851375|ref|YP_002465807.1| - 0.0081 16.2 3.8 0.0081 16.2 3.8 4.2 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219851375|ref|YP_002465807.1| - 0.014 15.5 15.9 0.014 15.5 15.9 4.0 4 1 1 5 5 5 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851375|ref|YP_002465807.1| - 0.015 15.4 25.6 0.032 14.4 14.0 4.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851375|ref|YP_002465807.1| - 0.038 14.4 2.5 0.038 14.4 2.5 3.6 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851375|ref|YP_002465807.1| - 0.089 13.7 28.9 0.15 13.0 4.8 4.7 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|219851375|ref|YP_002465807.1| - 0.79 10.3 24.5 0.17 12.5 5.7 3.9 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851375|ref|YP_002465807.1| - 1.6 9.8 33.4 0.24 12.4 4.1 4.9 5 0 0 5 5 5 0 4Fe-4S binding domain Cation_efflux PF01545.21 gi|219851376|ref|YP_002465808.1| - 8.8e-30 103.9 12.6 1.1e-29 103.6 12.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|219851376|ref|YP_002465808.1| - 9.5e-08 32.1 0.0 1.6e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter HxlR PF01638.17 gi|219851377|ref|YP_002465809.1| - 4.8e-19 68.0 0.2 1e-18 66.9 0.1 1.5 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Lipoprotein_9 PF03180.14 gi|219851377|ref|YP_002465809.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 NLPA lipoprotein Fer4_16 PF13484.6 gi|219851378|ref|YP_002465810.1| - 0.00044 21.1 2.9 0.0013 19.6 2.9 1.8 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|219851378|ref|YP_002465810.1| - 0.0011 18.7 0.8 0.0011 18.7 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|219851378|ref|YP_002465810.1| - 0.11 13.5 2.5 0.11 13.5 2.5 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851378|ref|YP_002465810.1| - 7.2 7.3 10.9 0.23 12.1 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF2115 PF09888.9 gi|219851379|ref|YP_002465811.1| - 2.7e-20 73.5 0.0 3.2e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DJ-1_PfpI PF01965.24 gi|219851380|ref|YP_002465812.1| - 1.7e-22 80.0 0.0 2.1e-22 79.7 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Lactamase_B_3 PF13483.6 gi|219851381|ref|YP_002465813.1| - 4.7e-17 62.4 0.1 6.4e-17 61.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|219851381|ref|YP_002465813.1| - 3.4e-14 52.8 0.1 4.9e-14 52.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219851381|ref|YP_002465813.1| - 0.00022 21.3 0.4 0.0015 18.6 0.4 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily TetR_N PF00440.23 gi|219851382|ref|YP_002465814.1| - 2.4e-16 59.3 0.0 4.8e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|219851382|ref|YP_002465814.1| - 0.00011 22.3 0.1 0.00022 21.4 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase LacI PF00356.21 gi|219851382|ref|YP_002465814.1| - 0.0027 17.5 0.1 0.012 15.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family DUF2754 PF10953.8 gi|219851382|ref|YP_002465814.1| - 0.044 14.0 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) GP3_package PF16677.5 gi|219851382|ref|YP_002465814.1| - 0.048 13.8 0.0 0.094 12.9 0.0 1.5 1 0 0 1 1 1 0 DNA-packaging protein gp3 DUF658 PF04936.12 gi|219851382|ref|YP_002465814.1| - 0.069 12.9 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF658) HTH_7 PF02796.15 gi|219851382|ref|YP_002465814.1| - 0.074 13.1 0.4 0.78 9.9 0.1 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase MFS_1 PF07690.16 gi|219851383|ref|YP_002465815.1| - 6e-49 166.9 51.7 6e-49 166.9 51.7 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219851383|ref|YP_002465815.1| - 1.2e-10 40.8 17.5 1.2e-10 40.8 17.5 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter NTPase_1 PF03266.15 gi|219851384|ref|YP_002465816.1| - 4.5e-28 98.3 0.0 5.3e-28 98.0 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|219851384|ref|YP_002465816.1| - 5.3e-05 23.0 0.0 0.00015 21.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF2478 PF10649.9 gi|219851384|ref|YP_002465816.1| - 0.00064 19.4 0.0 0.0016 18.0 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) NACHT PF05729.12 gi|219851384|ref|YP_002465816.1| - 0.0025 17.7 0.0 0.0071 16.3 0.0 1.8 1 1 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 gi|219851384|ref|YP_002465816.1| - 0.0042 17.4 0.0 0.016 15.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|219851384|ref|YP_002465816.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|219851384|ref|YP_002465816.1| - 0.018 15.4 0.0 0.044 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_11 PF13086.6 gi|219851384|ref|YP_002465816.1| - 0.04 13.7 0.0 0.09 12.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|219851384|ref|YP_002465816.1| - 0.052 13.8 0.0 0.18 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain GvpD PF07088.11 gi|219851384|ref|YP_002465816.1| - 0.055 12.1 0.0 0.089 11.4 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein cobW PF02492.19 gi|219851384|ref|YP_002465816.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 gi|219851384|ref|YP_002465816.1| - 0.15 11.3 0.0 0.34 10.1 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.6 gi|219851384|ref|YP_002465816.1| - 0.16 12.4 0.0 0.24 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|219851385|ref|YP_002465817.1| - 1.1e-30 106.9 0.0 1.6e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851385|ref|YP_002465817.1| - 5.2e-08 33.1 0.1 6.8e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|219851385|ref|YP_002465817.1| - 0.00026 21.4 0.4 0.00049 20.5 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain oligo_HPY PF08352.12 gi|219851385|ref|YP_002465817.1| - 0.00037 21.0 0.0 0.00078 19.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|219851385|ref|YP_002465817.1| - 0.00053 20.3 0.1 0.0027 18.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|219851385|ref|YP_002465817.1| - 0.0087 15.8 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|219851385|ref|YP_002465817.1| - 0.01 15.4 0.4 0.21 11.2 0.4 2.4 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|219851385|ref|YP_002465817.1| - 0.014 15.8 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|219851385|ref|YP_002465817.1| - 0.028 14.4 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|219851385|ref|YP_002465817.1| - 0.053 13.4 0.4 0.23 11.3 0.1 1.9 2 0 0 2 2 2 0 NACHT domain ATP-synt_ab PF00006.25 gi|219851385|ref|YP_002465817.1| - 0.075 12.7 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain G-alpha PF00503.20 gi|219851385|ref|YP_002465817.1| - 0.077 12.1 0.0 0.085 12.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_29 PF13555.6 gi|219851385|ref|YP_002465817.1| - 0.12 12.2 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|219851385|ref|YP_002465817.1| - 0.17 11.8 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|219851385|ref|YP_002465817.1| - 0.17 11.0 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase PF06745.13 gi|219851385|ref|YP_002465817.1| - 0.18 11.1 0.4 2.3 7.5 0.1 2.1 2 0 0 2 2 2 0 KaiC RsgA_GTPase PF03193.16 gi|219851385|ref|YP_002465817.1| - 0.2 11.5 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|219851386|ref|YP_002465818.1| - 1.3e-24 87.3 0.0 1.7e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|219851386|ref|YP_002465818.1| - 1.9e-15 57.1 0.3 3.9e-15 56.1 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|219851386|ref|YP_002465818.1| - 1.4e-07 31.6 0.1 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|219851386|ref|YP_002465818.1| - 0.005 16.2 0.0 0.032 13.6 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|219851386|ref|YP_002465818.1| - 0.0099 15.6 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219851386|ref|YP_002465818.1| - 0.015 15.7 0.2 0.027 14.9 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|219851386|ref|YP_002465818.1| - 0.02 14.3 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|219851386|ref|YP_002465818.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|219851386|ref|YP_002465818.1| - 0.15 11.8 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein BPD_transp_1 PF00528.22 gi|219851387|ref|YP_002465819.1| - 3.4e-18 66.0 13.5 3.4e-18 66.0 13.5 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|219851387|ref|YP_002465819.1| - 0.31 11.0 0.1 0.31 11.0 0.1 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|219851388|ref|YP_002465820.1| - 6.9e-41 140.0 13.3 6.9e-41 140.0 13.3 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|219851389|ref|YP_002465821.1| - 8.3e-61 206.0 0.7 1.2e-60 205.5 0.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle EF-hand_5 PF13202.6 gi|219851389|ref|YP_002465821.1| - 0.01 15.3 0.2 0.025 14.1 0.2 1.7 1 0 0 1 1 1 0 EF hand EF-hand_1 PF00036.32 gi|219851389|ref|YP_002465821.1| - 0.095 12.3 0.1 0.27 10.9 0.1 1.8 1 0 0 1 1 1 0 EF hand Glyco_trans_1_3 PF13528.6 gi|219851389|ref|YP_002465821.1| - 0.2 10.9 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 1 DUF4430 PF14478.6 gi|219851390|ref|YP_002465822.1| - 0.0013 19.3 0.7 0.0037 17.8 0.7 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) EF-hand_1 PF00036.32 gi|219851391|ref|YP_002465823.1| - 6e-05 22.3 7.1 0.013 15.0 0.1 3.3 2 1 1 3 3 3 2 EF hand EF-hand_6 PF13405.6 gi|219851391|ref|YP_002465823.1| - 0.00024 20.8 2.8 0.064 13.2 0.1 2.8 2 1 0 2 2 2 2 EF-hand domain Dockerin_1 PF00404.18 gi|219851391|ref|YP_002465823.1| - 0.00045 20.4 1.9 0.0007 19.7 0.5 2.0 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_7 PF13499.6 gi|219851391|ref|YP_002465823.1| - 0.36 11.3 1.8 29 5.2 0.4 2.4 2 0 0 2 2 2 0 EF-hand domain pair FG-GAP PF01839.23 gi|219851391|ref|YP_002465823.1| - 1.3 9.2 7.7 8.1 6.7 1.1 3.2 3 0 0 3 3 3 0 FG-GAP repeat Dockerin_1 PF00404.18 gi|219851392|ref|YP_002465824.1| - 0.00016 21.8 1.8 0.00033 20.8 0.7 2.1 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219851392|ref|YP_002465824.1| - 0.00026 20.7 2.9 0.053 13.5 0.1 2.7 2 1 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219851392|ref|YP_002465824.1| - 0.00026 20.3 7.4 0.041 13.4 0.1 3.2 2 1 1 3 3 3 2 EF hand FG-GAP PF01839.23 gi|219851392|ref|YP_002465824.1| - 0.49 10.6 6.9 8 6.7 1.1 3.4 3 0 0 3 3 3 0 FG-GAP repeat EF-hand_7 PF13499.6 gi|219851392|ref|YP_002465824.1| - 0.51 10.8 1.8 30 5.2 0.5 2.4 2 0 0 2 2 2 0 EF-hand domain pair DUF3309 PF11752.8 gi|219851392|ref|YP_002465824.1| - 4.7 7.3 8.4 4.4 7.4 1.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) DUF4114 PF13448.6 gi|219851392|ref|YP_002465824.1| - 5.6 7.8 7.8 31 5.4 1.9 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4114) CPP1-like PF11833.8 gi|219851393|ref|YP_002465825.1| - 0.046 13.4 0.2 0.046 13.4 0.2 2.7 3 0 0 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like LEH PF07858.12 gi|219851393|ref|YP_002465825.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain Phage_holin_3_6 PF07332.11 gi|219851393|ref|YP_002465825.1| - 0.4 10.7 7.9 0.046 13.8 2.4 2.0 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|219851393|ref|YP_002465825.1| - 7.1 6.2 9.3 0.2 11.3 0.6 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) DUF4769 PF15992.5 gi|219851393|ref|YP_002465825.1| - 9 6.0 6.1 21 4.8 6.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4769) DUF4430 PF14478.6 gi|219851394|ref|YP_002465826.1| - 3.8e-09 37.0 13.4 0.00019 22.0 2.5 3.7 3 0 0 3 3 3 2 Domain of unknown function (DUF4430) PKD PF00801.20 gi|219851394|ref|YP_002465826.1| - 2.9e-06 27.0 0.6 2.9e-06 27.0 0.6 5.4 6 0 0 6 6 6 2 PKD domain Oxidored_molyb PF00174.19 gi|219851394|ref|YP_002465826.1| - 3.8e-05 23.4 0.0 0.00015 21.4 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase molybdopterin binding domain AP_endonuc_2 PF01261.24 gi|219851395|ref|YP_002465827.1| - 2.6e-17 63.0 0.1 3.7e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TatD_DNase PF01026.21 gi|219851395|ref|YP_002465827.1| - 0.012 15.0 0.0 0.039 13.3 0.0 1.8 1 1 0 1 1 1 0 TatD related DNase GATase_3 PF07685.14 gi|219851396|ref|YP_002465828.1| - 1.7e-34 119.1 0.0 2.4e-34 118.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|219851396|ref|YP_002465828.1| - 1.1e-17 64.6 0.1 5.1e-13 49.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|219851396|ref|YP_002465828.1| - 1.7e-15 57.2 0.0 2.6e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|219851396|ref|YP_002465828.1| - 0.045 13.0 0.5 0.093 12.0 0.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain PRK PF00485.18 gi|219851396|ref|YP_002465828.1| - 0.21 11.3 0.2 6.6 6.4 0.1 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family F420_ligase PF01996.16 gi|219851397|ref|YP_002465829.1| - 6e-57 192.8 0.1 7e-57 192.6 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Pterin_bind PF00809.22 gi|219851398|ref|YP_002465830.1| - 7.6e-48 163.3 0.0 8.9e-48 163.1 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.19 gi|219851399|ref|YP_002465831.1| - 8.2e-71 236.5 1.1 1.1e-70 236.1 1.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|219851399|ref|YP_002465831.1| - 1.6e-32 112.2 0.1 2.4e-32 111.6 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain adh_short PF00106.25 gi|219851399|ref|YP_002465831.1| - 0.033 13.7 0.3 0.078 12.4 0.3 1.7 1 0 0 1 1 1 0 short chain dehydrogenase Hen1_Lam_C PF18441.1 gi|219851399|ref|YP_002465831.1| - 0.061 13.2 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Hen1 La-motif C-terminal domain SHMT PF00464.19 gi|219851400|ref|YP_002465832.1| - 5.8e-167 555.3 0.2 6.9e-167 555.1 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|219851400|ref|YP_002465832.1| - 0.0021 17.3 0.0 0.0038 16.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II MSA-2c PF12238.8 gi|219851401|ref|YP_002465833.1| - 0.028 14.4 0.1 1.5 8.7 0.0 2.1 2 0 0 2 2 2 0 Merozoite surface antigen 2c V_ATPase_I PF01496.19 gi|219851401|ref|YP_002465833.1| - 0.3 9.0 1.5 0.34 8.8 1.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family PKcGMP_CC PF16808.5 gi|219851401|ref|YP_002465833.1| - 0.64 9.9 8.6 0.77 9.7 3.8 2.4 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase SMC_N PF02463.19 gi|219851402|ref|YP_002465834.1| - 2.3e-63 213.6 0.0 5.9e-63 212.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|219851402|ref|YP_002465834.1| - 1.2e-27 96.6 0.0 7.7e-27 93.9 0.0 2.5 3 0 0 3 3 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|219851402|ref|YP_002465834.1| - 1.3e-14 55.1 14.5 1.3e-14 55.1 14.5 4.5 2 2 1 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|219851402|ref|YP_002465834.1| - 3.9e-14 53.2 0.2 3.9e-14 53.2 0.2 3.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|219851402|ref|YP_002465834.1| - 3e-10 40.4 10.5 6.4e-06 26.2 0.4 3.9 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|219851402|ref|YP_002465834.1| - 3.5e-08 33.1 0.0 7.8e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|219851402|ref|YP_002465834.1| - 0.0002 20.3 8.9 0.0002 20.3 8.9 7.7 3 2 6 9 9 7 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|219851402|ref|YP_002465834.1| - 0.0031 17.5 8.9 0.0031 17.5 8.9 6.9 4 2 2 7 7 5 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran PF00005.27 gi|219851402|ref|YP_002465834.1| - 0.017 15.6 0.0 0.017 15.6 0.0 5.0 3 2 0 3 3 3 0 ABC transporter NPV_P10 PF05531.12 gi|219851402|ref|YP_002465834.1| - 0.019 15.4 7.0 0.98 9.9 0.0 5.0 4 1 1 5 5 4 0 Nucleopolyhedrovirus P10 protein HTH_27 PF13463.6 gi|219851402|ref|YP_002465834.1| - 0.054 14.0 0.3 0.35 11.4 0.3 2.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain ZapB PF06005.12 gi|219851402|ref|YP_002465834.1| - 0.061 13.8 0.2 0.061 13.8 0.2 9.5 8 2 3 11 11 9 0 Cell division protein ZapB SchA_CurD PF04486.12 gi|219851402|ref|YP_002465834.1| - 0.086 12.9 1.4 0.35 11.0 0.1 2.8 2 0 0 2 2 2 0 SchA/CurD like domain DUF5082 PF16888.5 gi|219851402|ref|YP_002465834.1| - 0.19 12.0 40.0 0.16 12.2 3.6 6.0 3 2 1 5 5 4 0 Domain of unknown function (DUF5082) KxDL PF10241.9 gi|219851402|ref|YP_002465834.1| - 0.3 11.4 0.0 0.3 11.4 0.0 7.0 5 2 3 8 8 7 0 Uncharacterized conserved protein DUF1664 PF07889.12 gi|219851402|ref|YP_002465834.1| - 0.46 10.5 30.5 0.069 13.2 1.5 7.0 3 2 4 7 7 7 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|219851402|ref|YP_002465834.1| - 0.47 10.5 17.6 0.072 13.1 1.9 4.6 4 1 0 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|219851402|ref|YP_002465834.1| - 2.1 8.6 13.7 9.7 6.5 0.1 4.9 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) TMPIT PF07851.13 gi|219851402|ref|YP_002465834.1| - 2.5 7.2 29.3 0.024 13.9 0.6 4.6 3 2 0 4 4 4 0 TMPIT-like protein SMC_ScpA PF02616.14 gi|219851403|ref|YP_002465835.1| - 5.2e-11 42.9 0.2 1.4e-08 35.0 0.0 2.4 2 1 0 2 2 2 2 Segregation and condensation protein ScpA MHYT PF03707.16 gi|219851404|ref|YP_002465836.1| - 0.58 10.4 5.9 3.2 8.0 0.6 2.3 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat DUF3712 PF12505.8 gi|219851405|ref|YP_002465837.1| - 1e-06 29.0 2.8 0.005 17.1 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3712) LEA_2 PF03168.13 gi|219851405|ref|YP_002465837.1| - 2.2e-06 28.1 0.0 3.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein DUF1356 PF07092.12 gi|219851405|ref|YP_002465837.1| - 0.015 14.6 1.1 0.018 14.3 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) Rho_GDI PF02115.17 gi|219851405|ref|YP_002465837.1| - 0.23 11.2 0.4 2.1 8.0 0.1 1.9 1 1 1 2 2 2 0 RHO protein GDP dissociation inhibitor DUF373 PF04123.13 gi|219851406|ref|YP_002465838.1| - 0.0014 18.1 7.8 0.0014 18.1 7.8 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF373) RhodobacterPufX PF11511.8 gi|219851406|ref|YP_002465838.1| - 4 7.1 5.4 38 4.0 0.0 3.5 3 0 0 3 3 3 0 Intrinsic membrane protein PufX PAP2 PF01569.21 gi|219851407|ref|YP_002465839.1| - 6.5e-05 22.7 11.8 6.5e-05 22.7 11.8 2.8 2 1 1 3 3 3 1 PAP2 superfamily NHL PF01436.21 gi|219851408|ref|YP_002465840.1| - 6e-48 158.5 3.3 9.2e-11 41.2 0.6 6.6 6 0 0 6 6 6 6 NHL repeat SGL PF08450.12 gi|219851408|ref|YP_002465840.1| - 5.9e-22 78.5 6.8 7.5e-08 32.3 0.4 4.9 1 1 3 4 4 4 4 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219851408|ref|YP_002465840.1| - 9.5e-20 70.3 19.5 0.00047 20.1 0.0 7.0 6 0 0 6 6 6 6 Beta-propeller repeat CBM_6 PF03422.15 gi|219851408|ref|YP_002465840.1| - 3.9e-17 62.7 0.2 3.9e-17 62.7 0.2 3.3 3 1 1 4 4 4 1 Carbohydrate binding module (family 6) DUF5128 PF17170.4 gi|219851408|ref|YP_002465840.1| - 1.7e-10 40.6 0.3 0.0049 16.1 0.0 4.0 2 2 2 4 4 4 4 6-bladed beta-propeller DUF5010_C PF18099.1 gi|219851408|ref|YP_002465840.1| - 2.8e-07 30.7 0.0 7.6e-07 29.2 0.0 1.8 1 0 0 1 1 1 1 DUF5010 C-terminal domain Phytase-like PF13449.6 gi|219851408|ref|YP_002465840.1| - 5.9e-07 29.7 0.7 16 5.3 0.0 5.6 1 1 5 6 6 6 0 Esterase-like activity of phytase Ldl_recept_b PF00058.17 gi|219851408|ref|YP_002465840.1| - 2.3e-05 24.8 0.0 8.2 7.0 0.0 5.4 5 0 0 5 5 5 1 Low-density lipoprotein receptor repeat class B CBM_35 PF16990.5 gi|219851408|ref|YP_002465840.1| - 3.3e-05 24.1 0.1 0.00016 21.9 0.0 2.2 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) SdiA-regulated PF06977.11 gi|219851408|ref|YP_002465840.1| - 8.8e-05 21.8 1.4 13 4.9 0.0 5.1 5 0 0 5 5 5 0 SdiA-regulated US22 PF02393.16 gi|219851408|ref|YP_002465840.1| - 0.0016 18.7 2.6 15 5.9 0.0 5.4 2 2 3 5 5 5 0 US22 like CBM60 PF16841.5 gi|219851408|ref|YP_002465840.1| - 0.029 14.8 0.1 0.12 12.8 0.1 2.1 1 0 0 1 1 1 0 Ca-dependent carbohydrate-binding module xylan-binding SNN_cytoplasm PF09051.10 gi|219851408|ref|YP_002465840.1| - 0.11 12.4 0.2 25 4.8 0.0 3.1 3 0 0 3 3 3 0 Stannin cytoplasmic Ntox33 PF15533.6 gi|219851408|ref|YP_002465840.1| - 3.9 8.0 4.2 57 4.3 0.1 4.1 6 0 0 6 6 6 0 Bacterial toxin 33 NPCBM_assoc PF10633.9 gi|219851409|ref|YP_002465841.1| - 1.4e-22 79.8 3.6 4.8e-16 58.8 0.8 4.5 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|219851409|ref|YP_002465841.1| - 8.8e-12 45.1 7.4 1.8e-11 44.2 0.3 3.7 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain DUF4832 PF16116.5 gi|219851409|ref|YP_002465841.1| - 4.6e-06 26.7 0.5 0.00086 19.2 0.0 3.2 3 2 2 5 5 5 1 Domain of unknown function (DUF4832) CARDB PF07705.11 gi|219851409|ref|YP_002465841.1| - 4.8e-06 26.8 8.6 0.0049 17.1 0.6 4.4 3 1 2 5 5 5 2 CARDB Transglut_N PF00868.20 gi|219851409|ref|YP_002465841.1| - 7.2e-06 26.3 0.1 0.61 10.4 0.0 3.4 3 0 0 3 3 3 2 Transglutaminase family CarbopepD_reg_2 PF13715.6 gi|219851409|ref|YP_002465841.1| - 0.00014 21.8 3.5 0.00027 20.9 0.5 2.9 2 1 0 2 2 2 1 CarboxypepD_reg-like domain Alpha_adaptinC2 PF02883.20 gi|219851409|ref|YP_002465841.1| - 0.00041 20.6 0.0 0.0017 18.6 0.0 2.1 1 0 0 1 1 1 1 Adaptin C-terminal domain PEGA PF08308.11 gi|219851409|ref|YP_002465841.1| - 0.0007 19.4 0.7 0.043 13.7 0.0 3.3 3 0 0 3 3 3 1 PEGA domain DoxA PF07680.11 gi|219851409|ref|YP_002465841.1| - 0.0092 15.9 0.1 0.68 9.8 0.0 3.3 2 2 0 2 2 2 1 TQO small subunit DoxA DUF4232 PF14016.6 gi|219851409|ref|YP_002465841.1| - 0.018 15.2 1.2 6.1 7.0 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4232) Y_Y_Y PF07495.13 gi|219851409|ref|YP_002465841.1| - 0.019 14.9 1.5 29 4.7 0.1 4.4 5 0 0 5 5 5 0 Y_Y_Y domain Big_1 PF02369.16 gi|219851409|ref|YP_002465841.1| - 0.03 14.3 1.7 0.079 13.0 0.4 2.4 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF3823 PF12866.7 gi|219851409|ref|YP_002465841.1| - 0.064 13.6 0.3 24 5.3 0.0 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3823) N-terminal domain fn3_3 PF14686.6 gi|219851409|ref|YP_002465841.1| - 0.065 13.0 3.7 2.2 8.1 0.1 3.5 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF11 PF01345.18 gi|219851409|ref|YP_002465841.1| - 0.089 13.1 2.8 0.2 12.0 0.5 2.8 2 1 1 3 3 3 0 Domain of unknown function DUF11 Invasin_D3 PF09134.10 gi|219851409|ref|YP_002465841.1| - 1.5 9.2 5.6 0.58 10.5 0.5 2.8 2 1 0 2 2 2 0 Invasin, domain 3 ABC2_membrane_2 PF12679.7 gi|219851410|ref|YP_002465842.1| - 1.5e-56 191.8 12.1 1.8e-56 191.6 12.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|219851410|ref|YP_002465842.1| - 1.8e-09 37.5 8.8 1.8e-09 37.5 8.8 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|219851410|ref|YP_002465842.1| - 0.0011 18.1 32.3 0.0022 17.2 24.7 2.9 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF4131 PF13567.6 gi|219851410|ref|YP_002465842.1| - 0.17 11.5 3.4 28 4.3 3.9 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) ABC2_membrane_4 PF12730.7 gi|219851410|ref|YP_002465842.1| - 0.43 10.5 16.4 0.036 14.0 9.7 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein DUF4293 PF14126.6 gi|219851410|ref|YP_002465842.1| - 1.8 8.8 8.1 1.7 8.9 4.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4293) E1-E2_ATPase PF00122.20 gi|219851410|ref|YP_002465842.1| - 9.1 5.8 13.0 0.26 10.8 0.3 3.1 2 1 2 4 4 4 0 E1-E2 ATPase ABC_tran PF00005.27 gi|219851411|ref|YP_002465843.1| - 1.1e-27 97.2 0.0 1.8e-27 96.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851411|ref|YP_002465843.1| - 3.6e-10 40.1 0.0 8.1e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219851411|ref|YP_002465843.1| - 0.0029 17.1 0.0 0.7 9.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219851411|ref|YP_002465843.1| - 0.0072 16.8 0.0 0.011 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219851411|ref|YP_002465843.1| - 0.03 14.0 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|219851411|ref|YP_002465843.1| - 0.13 12.0 0.0 9.5 5.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|219851411|ref|YP_002465843.1| - 0.16 11.7 0.0 0.41 10.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain HTH_24 PF13412.6 gi|219851413|ref|YP_002465845.1| - 1e-16 60.2 0.0 3.6e-13 48.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|219851413|ref|YP_002465845.1| - 4e-16 58.8 0.0 3.6e-09 36.5 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|219851413|ref|YP_002465845.1| - 4.2e-09 36.1 0.0 1e-05 25.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|219851413|ref|YP_002465845.1| - 1.5e-06 28.0 0.1 3.9e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|219851413|ref|YP_002465845.1| - 7.7e-05 22.5 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|219851413|ref|YP_002465845.1| - 0.00065 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|219851413|ref|YP_002465845.1| - 0.0011 18.8 0.0 0.0063 16.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|219851413|ref|YP_002465845.1| - 0.0011 18.8 0.0 0.0035 17.3 0.0 1.9 1 1 1 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|219851413|ref|YP_002465845.1| - 0.0033 17.6 0.0 0.0081 16.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Crp PF00325.20 gi|219851413|ref|YP_002465845.1| - 0.0033 17.0 0.0 0.0066 16.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family TrmB PF01978.19 gi|219851413|ref|YP_002465845.1| - 0.019 14.9 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|219851413|ref|YP_002465845.1| - 0.021 15.0 0.0 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain RepL PF05732.11 gi|219851413|ref|YP_002465845.1| - 0.027 13.9 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) GntR PF00392.21 gi|219851413|ref|YP_002465845.1| - 0.033 13.8 0.1 0.54 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|219851413|ref|YP_002465845.1| - 0.058 13.8 0.0 0.53 10.7 0.0 2.3 2 1 0 2 2 2 0 FaeA-like protein Penicillinase_R PF03965.16 gi|219851413|ref|YP_002465845.1| - 0.064 13.6 0.0 0.28 11.5 0.0 1.9 1 1 1 2 2 2 0 Penicillinase repressor HTH_10 PF04967.12 gi|219851413|ref|YP_002465845.1| - 0.11 12.3 0.0 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain GerE PF00196.19 gi|219851413|ref|YP_002465845.1| - 0.12 11.9 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.20 gi|219851413|ref|YP_002465845.1| - 0.13 12.6 0.0 0.34 11.3 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator HTH_Tnp_IS630 PF01710.16 gi|219851413|ref|YP_002465845.1| - 0.14 12.3 0.0 1.6 8.8 0.0 2.1 2 0 0 2 2 2 0 Transposase sCache_2 PF17200.4 gi|219851415|ref|YP_002465847.1| - 9.8e-31 106.7 1.6 8.8e-16 58.1 0.0 3.5 3 1 1 4 4 4 3 Single Cache domain 2 dCache_2 PF08269.11 gi|219851415|ref|YP_002465847.1| - 2e-20 73.2 0.0 3.1e-11 43.0 0.0 3.1 3 0 0 3 3 3 3 Cache domain DUF308 PF03729.13 gi|219851416|ref|YP_002465848.1| - 3.5e-16 59.3 48.3 3e-10 40.3 16.2 3.4 3 1 1 4 4 4 3 Short repeat of unknown function (DUF308) Papilloma_E5A PF05776.12 gi|219851416|ref|YP_002465848.1| - 0.046 14.1 2.0 0.046 14.1 2.0 2.9 3 0 0 3 3 3 0 Papillomavirus E5A protein DUF4538 PF15061.6 gi|219851416|ref|YP_002465848.1| - 0.13 12.1 0.5 0.13 12.1 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) UvrD-helicase PF00580.21 gi|219851418|ref|YP_002465850.1| - 1e-26 94.3 8.5 2e-16 60.4 0.7 3.3 1 1 0 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|219851418|ref|YP_002465850.1| - 4.2e-16 59.3 0.8 2.3e-09 37.1 0.0 2.7 2 1 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|219851418|ref|YP_002465850.1| - 5.7e-16 59.2 0.0 1.4e-15 57.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|219851418|ref|YP_002465850.1| - 0.00013 21.6 0.3 0.0092 15.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain UvrD_C_2 PF13538.6 gi|219851418|ref|YP_002465850.1| - 0.00027 20.7 0.0 0.0011 18.7 0.0 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|219851418|ref|YP_002465850.1| - 0.00053 19.8 1.3 0.46 10.2 0.0 3.3 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|219851418|ref|YP_002465850.1| - 0.0013 18.6 0.2 0.0044 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|219851418|ref|YP_002465850.1| - 0.032 13.9 0.0 0.68 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain Nit_Regul_Hom PF10126.9 gi|219851418|ref|YP_002465850.1| - 0.071 13.1 0.2 1.3 9.1 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII AAA_15 PF13175.6 gi|219851419|ref|YP_002465851.1| - 5.8e-36 125.0 21.6 2.3e-22 80.2 12.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|219851419|ref|YP_002465851.1| - 9.2e-29 101.2 6.3 3.5e-28 99.3 6.3 2.0 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|219851419|ref|YP_002465851.1| - 2e-17 63.5 1.5 3.2e-11 43.1 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.19 gi|219851419|ref|YP_002465851.1| - 9.8e-14 51.3 5.6 5.4e-13 48.9 5.6 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219851419|ref|YP_002465851.1| - 5.9e-12 46.5 13.8 5.9e-12 46.5 13.8 2.5 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|219851419|ref|YP_002465851.1| - 2.4e-06 27.2 0.0 6.1e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|219851419|ref|YP_002465851.1| - 0.00053 20.5 0.0 0.0022 18.5 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.6 gi|219851419|ref|YP_002465851.1| - 0.0034 17.8 0.0 0.068 13.5 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|219851419|ref|YP_002465851.1| - 0.0079 16.1 0.3 0.031 14.2 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase DUF4930 PF16284.5 gi|219851419|ref|YP_002465851.1| - 0.076 13.0 1.1 0.17 11.9 1.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4930) AAA_27 PF13514.6 gi|219851419|ref|YP_002465851.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.6 gi|219851420|ref|YP_002465852.1| - 1.8e-08 35.0 0.0 2.6e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851420|ref|YP_002465852.1| - 5.2e-06 27.0 0.0 8.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851420|ref|YP_002465852.1| - 0.0016 17.8 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|219851420|ref|YP_002465852.1| - 0.0065 16.3 0.0 0.008 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|219851420|ref|YP_002465852.1| - 0.017 14.8 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_9 PF08003.11 gi|219851420|ref|YP_002465852.1| - 0.043 12.7 0.0 0.17 10.8 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) MTS PF05175.14 gi|219851420|ref|YP_002465852.1| - 0.18 11.4 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain Peptidase_M3 PF01432.20 gi|219851421|ref|YP_002465853.1| - 2.1e-123 413.0 0.1 2.6e-123 412.7 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M2 PF01401.18 gi|219851421|ref|YP_002465853.1| - 0.00027 19.7 0.1 0.00043 19.0 0.1 1.2 1 0 0 1 1 1 1 Angiotensin-converting enzyme ydhR PF08803.11 gi|219851422|ref|YP_002465854.1| - 1.6 8.7 5.1 20 5.2 0.1 3.1 3 0 0 3 3 3 0 Putative mono-oxygenase ydhR Nitrate_red_gam PF02665.14 gi|219851423|ref|YP_002465855.1| - 2.4e-05 24.0 20.8 3.7e-05 23.4 10.1 3.6 1 1 2 3 3 3 1 Nitrate reductase gamma subunit CCG PF02754.16 gi|219851424|ref|YP_002465856.1| - 1.6e-29 101.9 2.4 3.1e-16 59.4 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|219851424|ref|YP_002465856.1| - 1.7e-08 34.8 4.4 1.7e-08 34.8 4.4 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851424|ref|YP_002465856.1| - 2.4e-07 30.8 15.2 7.5e-07 29.2 4.8 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851424|ref|YP_002465856.1| - 8.1e-07 29.5 1.8 8.1e-07 29.5 1.8 3.0 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219851424|ref|YP_002465856.1| - 3.7e-05 23.4 17.9 0.0018 18.0 3.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219851424|ref|YP_002465856.1| - 6.9e-05 22.9 10.8 6.9e-05 22.9 10.8 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851424|ref|YP_002465856.1| - 0.00022 22.1 5.9 0.12 13.3 1.5 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219851424|ref|YP_002465856.1| - 0.0024 18.2 2.2 0.0024 18.2 2.2 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219851424|ref|YP_002465856.1| - 0.0029 17.6 2.5 0.0029 17.6 2.5 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851424|ref|YP_002465856.1| - 0.014 15.9 15.3 0.014 15.9 15.3 3.0 3 1 2 5 5 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851424|ref|YP_002465856.1| - 0.021 14.9 13.3 0.047 13.8 0.4 3.8 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851424|ref|YP_002465856.1| - 0.022 14.8 19.3 0.14 12.3 3.3 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|219851424|ref|YP_002465856.1| - 0.17 12.4 0.3 0.17 12.4 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|219851424|ref|YP_002465856.1| - 0.3 11.9 6.7 1.3 9.9 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|219851424|ref|YP_002465856.1| - 0.48 10.6 8.8 0.87 9.8 0.2 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fe-ADH PF00465.19 gi|219851425|ref|YP_002465857.1| - 1.8e-59 201.4 0.0 2.1e-59 201.2 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|219851425|ref|YP_002465857.1| - 2.2e-26 93.1 0.0 2.9e-26 92.7 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|219851425|ref|YP_002465857.1| - 1.1e-06 28.0 0.4 2.2e-05 23.7 0.4 2.2 1 1 0 1 1 1 1 3-dehydroquinate synthase SnoaL_3 PF13474.6 gi|219851426|ref|YP_002465858.1| - 1.1e-30 106.4 0.1 1.2e-30 106.2 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|219851426|ref|YP_002465858.1| - 2.1e-10 40.9 0.4 2.6e-10 40.6 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|219851426|ref|YP_002465858.1| - 9.2e-05 22.6 0.2 0.00012 22.2 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 gi|219851426|ref|YP_002465858.1| - 0.00072 20.2 0.1 0.00093 19.8 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.8 gi|219851426|ref|YP_002465858.1| - 0.0064 16.2 0.1 0.0082 15.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3225) FRB_dom PF08771.11 gi|219851426|ref|YP_002465858.1| - 0.092 13.2 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 FKBP12-rapamycin binding domain CaMKII_AD PF08332.10 gi|219851426|ref|YP_002465858.1| - 0.1 12.8 0.0 0.2 11.8 0.0 1.5 1 1 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II association domain Lumazine_bd_2 PF12893.7 gi|219851426|ref|YP_002465858.1| - 0.12 13.1 0.2 0.21 12.3 0.2 1.6 1 1 0 1 1 1 0 Putative lumazine-binding DUF1648 PF07853.11 gi|219851428|ref|YP_002465860.1| - 0.14 11.8 1.0 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1648) MFS_1 PF07690.16 gi|219851429|ref|YP_002465861.1| - 1.9e-19 69.8 58.7 5.7e-15 55.1 30.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily KH_7 PF17214.3 gi|219851430|ref|YP_002465862.1| - 1.5e-26 92.1 2.8 2.1e-25 88.4 0.6 2.9 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|219851430|ref|YP_002465862.1| - 3.9e-23 81.8 0.0 7.4e-23 80.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|219851430|ref|YP_002465862.1| - 1.7e-15 56.7 0.1 3.8e-15 55.6 0.1 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|219851430|ref|YP_002465862.1| - 6.5e-14 51.8 0.0 1.1e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219851430|ref|YP_002465862.1| - 2.8e-11 43.8 0.0 8.8e-08 32.4 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219851430|ref|YP_002465862.1| - 4.2e-08 33.0 0.0 1e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|219851430|ref|YP_002465862.1| - 3.7e-06 26.7 0.4 1.8e-05 24.4 0.1 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|219851430|ref|YP_002465862.1| - 0.00055 19.9 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|219851430|ref|YP_002465862.1| - 0.0094 15.8 0.1 0.069 13.0 0.0 2.3 2 0 0 2 2 2 1 KH domain DUF3489 PF11994.8 gi|219851430|ref|YP_002465862.1| - 0.016 15.2 0.0 0.043 13.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) KH_4 PF13083.6 gi|219851430|ref|YP_002465862.1| - 0.064 13.1 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 KH domain Proteasome PF00227.26 gi|219851431|ref|YP_002465863.1| - 7.7e-59 198.4 2.4 8.9e-59 198.2 2.4 1.0 1 0 0 1 1 1 1 Proteasome subunit CBS PF00571.28 gi|219851432|ref|YP_002465864.1| - 1.7e-43 146.8 11.1 7.3e-16 58.4 0.2 4.1 4 0 0 4 4 4 4 CBS domain Peptidase_S55 PF05580.12 gi|219851432|ref|YP_002465864.1| - 0.034 14.1 0.1 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 SpoIVB peptidase S55 RNA_pol_Rpb5_C PF01191.19 gi|219851432|ref|YP_002465864.1| - 0.8 9.6 3.3 21 5.1 0.0 3.7 3 2 1 4 4 4 0 RNA polymerase Rpb5, C-terminal domain Usp PF00582.26 gi|219851433|ref|YP_002465865.1| - 1.2e-32 113.3 0.3 1.4e-32 113.2 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|219851434|ref|YP_002465866.1| - 2.3e-14 53.5 0.0 2.5e-07 30.3 0.0 2.2 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|219851434|ref|YP_002465866.1| - 1.5e-10 41.0 0.0 2.1e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|219851434|ref|YP_002465866.1| - 0.00069 19.2 1.5 0.0022 17.6 0.1 1.9 1 1 0 2 2 2 1 Amidohydrolase family Sec61_beta PF03911.16 gi|219851435|ref|YP_002465867.1| - 2.4e-16 59.5 0.6 2.7e-16 59.3 0.6 1.0 1 0 0 1 1 1 1 Sec61beta family DUF883 PF05957.13 gi|219851435|ref|YP_002465867.1| - 0.073 13.7 0.1 0.08 13.5 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) F420_ligase PF01996.16 gi|219851436|ref|YP_002465868.1| - 5.7e-57 192.9 0.0 8.3e-57 192.3 0.0 1.2 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase STT3 PF02516.14 gi|219851438|ref|YP_002465870.1| - 1.4e-20 73.8 45.4 2.6e-19 69.5 45.4 2.3 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|219851438|ref|YP_002465870.1| - 9.4e-10 38.7 4.1 3.7e-09 36.8 3.2 2.5 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain Gemini_mov PF01708.16 gi|219851438|ref|YP_002465870.1| - 0.75 9.6 0.0 0.75 9.6 0.0 4.1 5 0 0 5 5 5 0 Geminivirus putative movement protein Rhodanese PF00581.20 gi|219851440|ref|YP_002465872.1| - 5.3e-17 62.3 0.0 7.9e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain LemA PF04011.12 gi|219851441|ref|YP_002465873.1| - 3e-42 144.0 0.5 3.5e-42 143.8 0.5 1.1 1 0 0 1 1 1 1 LemA family Dynamitin PF04912.14 gi|219851441|ref|YP_002465873.1| - 0.0069 15.8 1.0 0.012 15.0 1.0 1.3 1 1 0 1 1 1 1 Dynamitin Cep57_MT_bd PF06657.13 gi|219851441|ref|YP_002465873.1| - 0.022 15.2 0.4 0.044 14.2 0.1 1.8 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 PspB PF06667.12 gi|219851441|ref|YP_002465873.1| - 0.045 13.8 0.4 0.14 12.2 0.4 1.9 1 0 0 1 1 1 0 Phage shock protein B Chordopox_A13L PF05961.11 gi|219851441|ref|YP_002465873.1| - 0.049 13.9 2.0 0.12 12.7 2.0 1.6 1 0 0 1 1 1 0 Chordopoxvirus A13L protein DUF948 PF06103.11 gi|219851441|ref|YP_002465873.1| - 0.049 13.9 6.4 1.5 9.1 1.0 2.3 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) EVI2A PF05399.11 gi|219851441|ref|YP_002465873.1| - 0.097 12.3 2.2 0.18 11.4 2.2 1.4 1 0 0 1 1 1 0 Ectropic viral integration site 2A protein (EVI2A) Baculo_PEP_C PF04513.12 gi|219851441|ref|YP_002465873.1| - 0.11 12.6 1.4 0.43 10.6 0.7 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_TATA_bd PF12325.8 gi|219851441|ref|YP_002465873.1| - 0.12 12.6 0.8 0.32 11.2 0.1 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF16 PF01519.16 gi|219851441|ref|YP_002465873.1| - 0.18 12.3 0.7 7.4 7.1 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function DUF16 EzrA PF06160.12 gi|219851441|ref|YP_002465873.1| - 2.9 6.0 12.1 0.022 13.0 0.5 2.2 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF2207 PF09972.9 gi|219851442|ref|YP_002465874.1| - 3.3e-69 234.0 0.1 4.2e-69 233.6 0.1 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Radical_SAM PF04055.21 gi|219851443|ref|YP_002465875.1| - 1.9e-26 93.4 0.2 4.3e-26 92.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|219851443|ref|YP_002465875.1| - 2.4e-18 66.3 0.2 5.9e-18 65.0 0.2 1.7 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|219851443|ref|YP_002465875.1| - 2.6e-06 27.7 0.0 4.8e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219851443|ref|YP_002465875.1| - 2.1e-05 24.6 0.0 0.00011 22.3 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain FtsJ PF01728.19 gi|219851444|ref|YP_002465876.1| - 2.9e-46 157.8 0.0 3.3e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|219851444|ref|YP_002465876.1| - 0.003 17.4 0.0 0.0043 16.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PCNA_N PF00705.18 gi|219851445|ref|YP_002465877.1| - 1.1e-11 44.5 0.4 2.5e-11 43.4 0.4 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.16 gi|219851445|ref|YP_002465877.1| - 1.3e-08 34.2 0.0 2.2e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.15 gi|219851445|ref|YP_002465877.1| - 9.1e-08 32.3 0.0 5.4e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|219851445|ref|YP_002465877.1| - 4.3e-05 23.1 0.0 6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Rad9 DNA_primase_lrg PF04104.14 gi|219851446|ref|YP_002465878.1| - 2.2e-23 83.0 0.0 2.8e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit TraQ PF09679.10 gi|219851447|ref|YP_002465879.1| - 0.14 12.1 2.4 0.14 12.1 2.4 1.0 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) Colicin PF01024.19 gi|219851447|ref|YP_002465879.1| - 0.37 10.6 2.4 0.39 10.6 2.4 1.0 1 0 0 1 1 1 0 Colicin pore forming domain NUDIX PF00293.28 gi|219851449|ref|YP_002465881.1| - 5.7e-19 68.5 0.0 9.6e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.11 gi|219851449|ref|YP_002465881.1| - 1.2e-11 44.0 2.2 2.1e-11 43.2 2.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.11 gi|219851449|ref|YP_002465881.1| - 3.8e-06 27.5 0.0 6.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DZR PF12773.7 gi|219851449|ref|YP_002465881.1| - 0.017 15.2 0.5 0.029 14.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|219851449|ref|YP_002465881.1| - 0.017 15.2 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|219851449|ref|YP_002465881.1| - 0.056 13.4 2.8 0.21 11.5 2.8 2.0 1 1 0 1 1 1 0 Nudix N-terminal DUF1451 PF07295.11 gi|219851449|ref|YP_002465881.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_2 PF13240.6 gi|219851449|ref|YP_002465881.1| - 0.53 10.1 3.5 3.7 7.4 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain FBPase_3 PF01950.16 gi|219851450|ref|YP_002465882.1| - 6e-48 163.8 0.1 5.2e-37 127.8 0.0 2.6 2 1 0 2 2 2 2 Fructose-1,6-bisphosphatase FBPase PF00316.20 gi|219851451|ref|YP_002465883.1| - 1.3e-39 135.6 0.1 1.8e-39 135.2 0.1 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|219851451|ref|YP_002465883.1| - 8.4e-05 22.2 0.2 0.00016 21.3 0.1 1.5 2 0 0 2 2 2 1 Inositol monophosphatase family DeoC PF01791.9 gi|219851452|ref|YP_002465884.1| - 8.5e-50 169.6 0.1 1e-49 169.3 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase ArsA_HSP20 PF17886.1 gi|219851453|ref|YP_002465885.1| - 0.0033 17.0 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|219851453|ref|YP_002465885.1| - 0.0038 17.3 0.0 0.0052 16.9 0.0 1.2 1 0 0 1 1 1 1 GvpH AAA PF00004.29 gi|219851454|ref|YP_002465886.1| - 2.1e-99 329.1 0.0 2.5e-49 167.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|219851454|ref|YP_002465886.1| - 1.1e-28 98.8 2.5 5e-14 51.8 0.0 3.0 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|219851454|ref|YP_002465886.1| - 3.1e-26 91.4 1.0 2.1e-25 88.7 1.4 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|219851454|ref|YP_002465886.1| - 8.3e-17 61.4 0.0 1.8e-08 34.3 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|219851454|ref|YP_002465886.1| - 9.3e-15 55.2 0.0 2e-06 28.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|219851454|ref|YP_002465886.1| - 4.7e-13 49.9 0.4 0.00016 22.1 0.1 4.1 2 2 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|219851454|ref|YP_002465886.1| - 1e-11 44.5 0.1 3.7e-11 42.6 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|219851454|ref|YP_002465886.1| - 5.1e-11 43.0 0.3 0.001 19.4 0.0 3.9 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|219851454|ref|YP_002465886.1| - 8.3e-11 41.7 0.0 0.00035 19.9 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|219851454|ref|YP_002465886.1| - 1.7e-09 38.0 0.0 0.002 18.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|219851454|ref|YP_002465886.1| - 5.6e-09 36.1 0.0 0.0013 18.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|219851454|ref|YP_002465886.1| - 6.4e-09 35.9 3.0 0.0061 16.6 0.0 4.5 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|219851454|ref|YP_002465886.1| - 7.6e-08 33.0 0.0 0.018 15.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|219851454|ref|YP_002465886.1| - 1.6e-07 30.9 0.2 0.008 15.6 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|219851454|ref|YP_002465886.1| - 2.1e-07 30.8 0.1 0.0096 15.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|219851454|ref|YP_002465886.1| - 6.8e-07 29.0 0.0 0.021 14.3 0.0 2.8 4 0 0 4 4 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|219851454|ref|YP_002465886.1| - 7e-07 29.6 0.0 0.024 15.0 0.0 2.8 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.27 gi|219851454|ref|YP_002465886.1| - 2.2e-06 28.2 0.1 0.13 12.7 0.0 3.1 3 0 0 3 3 2 2 ABC transporter AAA_25 PF13481.6 gi|219851454|ref|YP_002465886.1| - 2.4e-06 27.2 1.6 0.92 9.0 0.1 3.8 4 0 0 4 4 4 2 AAA domain Sigma54_activat PF00158.26 gi|219851454|ref|YP_002465886.1| - 2.5e-06 27.3 0.0 0.17 11.6 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|219851454|ref|YP_002465886.1| - 2.5e-06 27.8 0.0 0.11 12.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|219851454|ref|YP_002465886.1| - 2.8e-06 26.7 0.0 0.059 12.5 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|219851454|ref|YP_002465886.1| - 3.9e-06 26.7 0.2 0.12 12.0 0.1 3.0 2 1 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|219851454|ref|YP_002465886.1| - 4.2e-06 26.2 0.0 0.024 13.9 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin TsaE PF02367.17 gi|219851454|ref|YP_002465886.1| - 4.5e-06 26.7 0.1 0.075 13.0 0.1 2.8 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|219851454|ref|YP_002465886.1| - 1.8e-05 24.0 0.1 0.075 12.1 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|219851454|ref|YP_002465886.1| - 2.6e-05 23.7 1.3 0.43 9.9 0.1 3.8 2 1 0 3 3 3 1 KaiC AAA_3 PF07726.11 gi|219851454|ref|YP_002465886.1| - 3.1e-05 23.8 0.0 0.32 10.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|219851454|ref|YP_002465886.1| - 0.0001 21.8 0.1 0.58 9.6 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.12 gi|219851454|ref|YP_002465886.1| - 0.0001 22.3 0.1 0.66 9.9 0.0 3.7 3 1 0 4 4 3 1 NACHT domain NB-ARC PF00931.22 gi|219851454|ref|YP_002465886.1| - 0.00011 21.5 0.0 0.34 10.1 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|219851454|ref|YP_002465886.1| - 0.00016 21.5 0.0 0.84 9.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|219851454|ref|YP_002465886.1| - 0.00019 21.4 0.1 1.9 8.4 0.0 3.4 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|219851454|ref|YP_002465886.1| - 0.00026 21.4 0.6 1.6 9.1 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|219851454|ref|YP_002465886.1| - 0.00046 20.6 0.0 1.9 8.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|219851454|ref|YP_002465886.1| - 0.0014 18.5 0.0 1.4 8.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|219851454|ref|YP_002465886.1| - 0.0015 18.5 0.2 4.3 7.2 0.0 3.6 2 1 1 3 3 3 0 NTPase DUF2075 PF09848.9 gi|219851454|ref|YP_002465886.1| - 0.0017 17.7 0.0 0.32 10.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TniB PF05621.11 gi|219851454|ref|YP_002465886.1| - 0.0021 17.5 0.0 1.7 8.0 0.0 3.3 3 0 0 3 3 3 1 Bacterial TniB protein Sigma54_activ_2 PF14532.6 gi|219851454|ref|YP_002465886.1| - 0.0025 18.0 0.0 3.2 7.9 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain Bac_DnaA PF00308.18 gi|219851454|ref|YP_002465886.1| - 0.003 17.4 0.0 2.6 7.8 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein SKI PF01202.22 gi|219851454|ref|YP_002465886.1| - 0.0036 17.4 0.0 4.3 7.4 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|219851454|ref|YP_002465886.1| - 0.0052 16.5 0.1 3.1 7.5 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase AFG1_ATPase PF03969.16 gi|219851454|ref|YP_002465886.1| - 0.0054 15.7 0.0 1.7 7.4 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase Rad17 PF03215.15 gi|219851454|ref|YP_002465886.1| - 0.0095 15.9 0.0 3 7.7 0.0 2.9 2 1 1 3 3 3 1 Rad17 P-loop domain ResIII PF04851.15 gi|219851454|ref|YP_002465886.1| - 0.012 15.6 0.1 13 5.7 0.0 3.1 3 1 0 3 3 3 0 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|219851454|ref|YP_002465886.1| - 0.017 14.2 0.0 5.3 6.0 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|219851454|ref|YP_002465886.1| - 0.022 14.5 0.0 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.25 gi|219851454|ref|YP_002465886.1| - 0.029 14.0 0.0 8.9 5.9 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|219851454|ref|YP_002465886.1| - 0.062 13.1 0.0 14 5.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.21 gi|219851454|ref|YP_002465886.1| - 0.072 12.8 0.1 16 5.1 0.0 3.3 2 1 1 3 3 3 0 Guanylate kinase Cytidylate_kin2 PF13189.6 gi|219851454|ref|YP_002465886.1| - 0.089 12.9 0.0 18 5.4 0.0 2.6 3 0 0 3 3 2 0 Cytidylate kinase-like family Zot PF05707.12 gi|219851454|ref|YP_002465886.1| - 0.11 12.2 0.0 0.74 9.4 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) IPT PF01745.16 gi|219851454|ref|YP_002465886.1| - 0.11 11.9 0.1 14 5.0 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase PduV-EutP PF10662.9 gi|219851454|ref|YP_002465886.1| - 0.12 12.1 0.0 4.5 7.0 0.0 2.6 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation 5-FTHF_cyc-lig PF01812.20 gi|219851455|ref|YP_002465887.1| - 3.7e-37 128.0 0.0 4.2e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family CdhC PF03598.15 gi|219851456|ref|YP_002465888.1| - 1.3e-64 216.7 0.0 2e-64 216.1 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CODH_A_N PF18537.1 gi|219851456|ref|YP_002465888.1| - 0.021 14.9 0.0 0.077 13.0 0.0 2.0 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain CdhD PF03599.16 gi|219851457|ref|YP_002465889.1| - 3.5e-34 118.2 0.0 4e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.16 gi|219851458|ref|YP_002465890.1| - 3.4e-94 315.7 0.0 4.1e-94 315.5 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|219851458|ref|YP_002465890.1| - 2.7e-13 49.3 2.8 6.7e-13 48.1 2.8 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster YhfH PF14149.6 gi|219851458|ref|YP_002465890.1| - 0.0044 17.0 0.2 0.0081 16.1 0.2 1.4 1 0 0 1 1 1 1 YhfH-like protein RACo_C_ter PF14574.6 gi|219851459|ref|YP_002465891.1| - 9.1e-101 336.3 0.8 1.7e-99 332.1 0.1 2.1 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|219851459|ref|YP_002465891.1| - 1.9e-54 183.7 0.5 4.6e-54 182.5 0.5 1.7 1 0 0 1 1 1 1 RACo middle region RACo_linker PF17650.1 gi|219851459|ref|YP_002465891.1| - 1.9e-21 75.7 0.0 3.6e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 RACo linker region Fer2 PF00111.27 gi|219851459|ref|YP_002465891.1| - 7.9e-10 38.6 0.0 2.4e-09 37.0 0.0 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BcrAD_BadFG PF01869.20 gi|219851459|ref|YP_002465891.1| - 5.4e-05 22.8 0.1 0.00027 20.5 0.1 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family AAA_31 PF13614.6 gi|219851461|ref|YP_002465893.1| - 9.1e-11 42.0 0.0 3.8e-10 39.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|219851461|ref|YP_002465893.1| - 6.4e-09 35.9 0.0 1.1e-08 35.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|219851461|ref|YP_002465893.1| - 5.3e-07 29.4 0.0 4e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|219851461|ref|YP_002465893.1| - 1.8e-05 24.1 0.0 2.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|219851461|ref|YP_002465893.1| - 9.5e-05 21.8 0.0 0.00022 20.6 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin CLP1_P PF16575.5 gi|219851461|ref|YP_002465893.1| - 0.00024 21.0 0.0 0.00048 20.0 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 gi|219851461|ref|YP_002465893.1| - 0.0019 17.7 0.0 0.0052 16.3 0.0 1.7 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|219851461|ref|YP_002465893.1| - 0.0037 16.7 0.0 0.013 15.0 0.0 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Torsin PF06309.11 gi|219851461|ref|YP_002465893.1| - 0.0046 17.1 0.0 0.0081 16.3 0.0 1.3 1 0 0 1 1 1 1 Torsin AAA_24 PF13479.6 gi|219851461|ref|YP_002465893.1| - 0.035 13.8 0.0 0.22 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|219851461|ref|YP_002465893.1| - 0.039 13.7 0.1 0.063 13.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|219851461|ref|YP_002465893.1| - 0.04 12.9 0.1 0.061 12.3 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|219851461|ref|YP_002465893.1| - 0.045 14.1 0.1 0.063 13.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain MipZ PF09140.11 gi|219851461|ref|YP_002465893.1| - 0.06 12.6 0.0 1 8.6 0.0 2.1 2 0 0 2 2 2 0 ATPase MipZ KAP_NTPase PF07693.14 gi|219851461|ref|YP_002465893.1| - 0.075 12.3 0.0 0.093 12.0 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_18 PF13238.6 gi|219851461|ref|YP_002465893.1| - 0.079 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|219851461|ref|YP_002465893.1| - 0.13 11.4 0.1 0.22 10.7 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain VirC1 PF07015.11 gi|219851461|ref|YP_002465893.1| - 0.15 11.4 0.0 2.4 7.4 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein APS_kinase PF01583.20 gi|219851461|ref|YP_002465893.1| - 0.17 11.7 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase Pectate_lyase_3 PF12708.7 gi|219851462|ref|YP_002465894.1| - 4.6e-43 147.6 34.1 2.4e-39 135.4 4.9 4.1 3 1 2 5 5 5 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|219851462|ref|YP_002465894.1| - 7.3e-19 68.2 75.4 5.1e-09 36.2 11.9 4.9 2 2 3 5 5 5 5 Right handed beta helix region End_N_terminal PF12218.8 gi|219851462|ref|YP_002465894.1| - 0.0011 18.6 0.0 0.0083 15.8 0.0 2.4 2 0 0 2 2 2 1 N terminal extension of bacteriophage endosialidase B_solenoid_ydck PF18836.1 gi|219851462|ref|YP_002465894.1| - 0.13 12.1 1.7 0.31 11.0 0.3 2.5 2 0 0 2 2 2 0 Beta solenoid repeat from YDCK OapA_N PF08525.11 gi|219851462|ref|YP_002465894.1| - 3.7 7.6 4.4 6.2 6.9 4.4 1.4 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif Pectate_lyase_3 PF12708.7 gi|219851463|ref|YP_002465895.1| - 4e-37 128.2 4.6 4e-37 128.2 4.6 1.6 2 0 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|219851463|ref|YP_002465895.1| - 1.3e-14 54.4 23.7 1.2e-07 31.7 4.5 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|219851463|ref|YP_002465895.1| - 3.7e-10 39.5 12.7 5.6e-06 25.8 7.1 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) End_N_terminal PF12218.8 gi|219851463|ref|YP_002465895.1| - 0.001 18.7 0.0 0.0025 17.5 0.0 1.7 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase Glyco_hydro_28 PF00295.17 gi|219851463|ref|YP_002465895.1| - 0.0021 17.2 0.6 0.0021 17.2 0.6 2.1 2 1 0 2 2 2 1 Glycosyl hydrolases family 28 Polysacc_deac_1 PF01522.21 gi|219851464|ref|YP_002465896.1| - 1.2e-06 28.4 0.0 2e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Imm41 PF15592.6 gi|219851464|ref|YP_002465896.1| - 0.0082 16.5 1.1 0.23 11.8 0.1 2.5 1 1 0 2 2 2 1 Immunity protein 41 DUF560 PF04575.13 gi|219851464|ref|YP_002465896.1| - 0.067 12.6 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF560) DegT_DnrJ_EryC1 PF01041.17 gi|219851465|ref|YP_002465897.1| - 7.2e-130 433.5 0.0 8.2e-130 433.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|219851465|ref|YP_002465897.1| - 5.4e-07 29.1 0.0 8.9e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|219851465|ref|YP_002465897.1| - 1.7e-05 24.0 0.1 2.3e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|219851465|ref|YP_002465897.1| - 3.5e-05 22.5 0.0 5.5e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|219851465|ref|YP_002465897.1| - 0.0011 18.4 0.1 0.0038 16.6 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Taq-exonuc PF09281.10 gi|219851465|ref|YP_002465897.1| - 0.1 12.6 0.0 4.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Taq polymerase, exonuclease S_100 PF01023.19 gi|219851465|ref|YP_002465897.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain Pyridoxal_deC PF00282.19 gi|219851465|ref|YP_002465897.1| - 0.13 11.0 0.0 0.19 10.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Hexapep PF00132.24 gi|219851466|ref|YP_002465898.1| - 7.5e-20 69.8 20.1 2.4e-06 27.1 1.2 5.0 4 1 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|219851466|ref|YP_002465898.1| - 1.3e-15 56.8 16.7 2.5e-07 30.3 0.8 5.5 6 0 0 6 6 6 4 Hexapeptide repeat of succinyl-transferase Spectrin_like PF18373.1 gi|219851467|ref|YP_002465899.1| - 0.058 13.5 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Spectrin like domain 7TMR-DISM_7TM PF07695.11 gi|219851468|ref|YP_002465900.1| - 0.0067 16.3 2.5 0.011 15.7 2.5 1.2 1 0 0 1 1 1 1 7TM diverse intracellular signalling DUF58 PF01882.18 gi|219851470|ref|YP_002465902.1| - 1.4e-10 41.3 0.0 2.7e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|219851471|ref|YP_002465903.1| - 1.3e-52 177.1 0.1 2e-52 176.5 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|219851471|ref|YP_002465903.1| - 4.6e-22 77.6 0.0 7.8e-22 76.9 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|219851471|ref|YP_002465903.1| - 1e-11 45.0 0.0 2e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|219851471|ref|YP_002465903.1| - 1.9e-06 28.3 0.0 4e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|219851471|ref|YP_002465903.1| - 6.5e-05 22.1 0.0 9.8e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|219851471|ref|YP_002465903.1| - 0.00014 21.6 0.0 0.00048 19.9 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|219851471|ref|YP_002465903.1| - 0.00086 19.0 0.0 0.0077 15.9 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|219851471|ref|YP_002465903.1| - 0.013 14.9 0.1 0.64 9.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|219851471|ref|YP_002465903.1| - 0.015 15.1 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|219851471|ref|YP_002465903.1| - 0.029 14.7 0.2 1.2 9.5 0.1 2.5 2 1 0 3 3 3 0 AAA domain MCM_lid PF17855.1 gi|219851471|ref|YP_002465903.1| - 0.034 14.6 0.0 0.08 13.4 0.0 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_22 PF13401.6 gi|219851471|ref|YP_002465903.1| - 0.12 12.7 0.1 4.6 7.5 0.0 2.5 1 1 1 2 2 2 0 AAA domain DUF4350 PF14258.6 gi|219851472|ref|YP_002465904.1| - 1.7e-07 31.5 0.1 4.3e-07 30.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|219851472|ref|YP_002465904.1| - 0.00037 20.1 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system CarboxypepD_reg PF13620.6 gi|219851473|ref|YP_002465905.1| - 3.4e-05 24.0 0.0 7.4e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4129 PF13559.6 gi|219851473|ref|YP_002465905.1| - 0.00017 21.7 0.0 0.00036 20.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Big_1 PF02369.16 gi|219851473|ref|YP_002465905.1| - 0.0082 16.1 1.2 0.091 12.8 0.2 2.4 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF1097 PF06496.11 gi|219851474|ref|YP_002465906.1| - 0.042 14.0 9.1 0.048 13.8 9.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1097) CrgA PF06781.12 gi|219851474|ref|YP_002465906.1| - 4.3 7.5 9.0 1.6 8.9 2.5 2.1 1 1 1 2 2 2 0 Cell division protein CrgA DUF1616 PF07760.11 gi|219851475|ref|YP_002465907.1| - 4.6e-98 328.2 0.1 5.3e-98 328.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) CitMHS PF03600.16 gi|219851475|ref|YP_002465907.1| - 0.0067 15.7 0.7 0.007 15.6 0.7 1.2 1 0 0 1 1 1 1 Citrate transporter 7TMR-DISM_7TM PF07695.11 gi|219851475|ref|YP_002465907.1| - 0.77 9.6 11.8 6.4 6.6 7.6 2.3 2 0 0 2 2 2 0 7TM diverse intracellular signalling DUF4870 PF09685.10 gi|219851475|ref|YP_002465907.1| - 7 6.8 11.3 13 6.0 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4870) UDPG_MGDP_dh_N PF03721.14 gi|219851476|ref|YP_002465908.1| - 4.1e-32 111.3 0.0 6.2e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|219851476|ref|YP_002465908.1| - 2.8e-22 78.7 0.0 2.6e-21 75.6 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|219851476|ref|YP_002465908.1| - 3.7e-18 65.9 0.0 1.2e-17 64.3 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.22 gi|219851477|ref|YP_002465909.1| - 1.7e-19 70.8 0.1 3.3e-19 69.9 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|219851477|ref|YP_002465909.1| - 9.8e-08 32.3 0.1 3.1e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|219851477|ref|YP_002465909.1| - 1e-05 26.0 0.0 2.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|219851477|ref|YP_002465909.1| - 0.00068 19.0 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|219851477|ref|YP_002465909.1| - 0.0056 17.1 0.1 0.016 15.6 0.1 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|219851477|ref|YP_002465909.1| - 0.013 16.1 0.1 0.032 14.9 0.1 1.6 2 0 0 2 2 1 0 CoA binding domain DUF3672 PF12421.8 gi|219851477|ref|YP_002465909.1| - 0.014 15.3 0.1 0.038 13.9 0.0 1.7 1 1 1 2 2 2 0 Fibronectin type III protein IlvN PF07991.12 gi|219851477|ref|YP_002465909.1| - 0.026 14.1 0.1 0.062 12.9 0.1 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain PulA_N1 PF17999.1 gi|219851477|ref|YP_002465909.1| - 0.044 14.5 0.0 0.75 10.6 0.0 2.7 3 0 0 3 3 3 0 Pullulanase N1-terminal domain 3HCDH_N PF02737.18 gi|219851477|ref|YP_002465909.1| - 0.089 12.7 0.1 0.28 11.0 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|219851477|ref|YP_002465909.1| - 0.12 12.7 0.6 1.5 9.1 0.6 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Glycos_transf_2 PF00535.26 gi|219851478|ref|YP_002465910.1| - 3.4e-23 82.3 0.0 5.4e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219851478|ref|YP_002465910.1| - 0.0062 16.5 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219851478|ref|YP_002465910.1| - 0.11 13.1 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Pectate_lyase_3 PF12708.7 gi|219851479|ref|YP_002465911.1| - 3.5e-40 138.1 5.1 3.5e-40 138.1 5.1 2.1 3 0 0 3 3 3 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|219851479|ref|YP_002465911.1| - 2.1e-11 43.9 32.9 5.2e-07 29.6 2.2 3.7 2 1 1 3 3 3 2 Right handed beta helix region NosD PF05048.13 gi|219851479|ref|YP_002465911.1| - 4.4e-09 36.0 21.0 2.3e-05 23.8 15.2 3.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) End_N_terminal PF12218.8 gi|219851479|ref|YP_002465911.1| - 0.0013 18.4 0.0 0.0035 17.0 0.0 1.8 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase Polysacc_synt PF01943.17 gi|219851480|ref|YP_002465912.1| - 4.2e-12 46.0 28.4 4.2e-12 46.0 28.4 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Glycophorin_A PF01102.18 gi|219851480|ref|YP_002465912.1| - 4 7.7 4.2 48 4.2 0.3 2.9 3 0 0 3 3 3 0 Glycophorin A FrhB_FdhB_C PF04432.13 gi|219851481|ref|YP_002465913.1| - 1.6e-28 99.5 0.1 2.8e-28 98.7 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|219851481|ref|YP_002465913.1| - 2.4e-14 53.2 0.0 1e-13 51.2 0.0 2.1 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|219851481|ref|YP_002465913.1| - 6.8e-08 32.0 8.9 9.8e-06 25.2 1.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219851481|ref|YP_002465913.1| - 1.2e-05 25.4 6.0 1.2e-05 25.4 6.0 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851481|ref|YP_002465913.1| - 2.3e-05 24.3 10.3 0.0043 17.1 1.2 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851481|ref|YP_002465913.1| - 4.6e-05 23.9 6.2 4.6e-05 23.9 6.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851481|ref|YP_002465913.1| - 0.00041 20.5 6.3 0.00041 20.5 6.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219851481|ref|YP_002465913.1| - 0.0018 18.6 9.7 0.11 13.1 1.5 3.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219851481|ref|YP_002465913.1| - 0.0018 18.3 8.1 0.0018 18.3 8.1 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851481|ref|YP_002465913.1| - 0.0036 18.2 7.6 0.82 10.7 7.9 2.7 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|219851481|ref|YP_002465913.1| - 0.09 13.2 10.1 1.1 9.8 6.5 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219851481|ref|YP_002465913.1| - 0.37 11.4 8.1 0.31 11.6 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|219851481|ref|YP_002465913.1| - 1.1 9.5 19.4 0.16 12.1 2.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|219851481|ref|YP_002465913.1| - 2.3 9.0 6.1 0.59 10.9 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|219851481|ref|YP_002465913.1| - 7.6 6.8 7.4 8.4 6.6 1.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain PS_pyruv_trans PF04230.13 gi|219851482|ref|YP_002465914.1| - 9.3e-32 111.1 0.0 1.6e-31 110.3 0.0 1.4 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase Glycos_transf_2 PF00535.26 gi|219851483|ref|YP_002465915.1| - 7.5e-30 104.0 0.0 1.1e-29 103.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219851483|ref|YP_002465915.1| - 4e-19 69.4 0.0 5.4e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219851483|ref|YP_002465915.1| - 3e-14 53.2 0.0 1.8e-13 50.6 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219851483|ref|YP_002465915.1| - 0.049 14.2 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_deac_1 PF01522.21 gi|219851484|ref|YP_002465916.1| - 1.2e-17 63.9 0.0 1.7e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.8 gi|219851484|ref|YP_002465916.1| - 9.3e-12 45.1 0.0 1.5e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) DUF2334 PF10096.9 gi|219851484|ref|YP_002465916.1| - 0.0004 20.1 0.1 0.00093 18.9 0.1 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Potassium_chann PF11404.8 gi|219851484|ref|YP_002465916.1| - 4.3 7.2 8.2 11 5.9 1.3 3.1 3 0 0 3 3 3 0 Potassium voltage-gated channel Acetyltransf_6 PF13480.7 gi|219851485|ref|YP_002465917.1| - 1.5e-12 47.9 0.0 2.1e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|219851485|ref|YP_002465917.1| - 1.9e-08 33.6 0.0 7.8e-05 21.7 0.1 2.9 2 1 1 3 3 3 2 FemAB family FemAB_like PF04339.12 gi|219851485|ref|YP_002465917.1| - 0.0013 18.0 0.0 0.014 14.6 0.0 2.1 1 1 1 2 2 2 1 Peptidogalycan biosysnthesis/recognition Pectate_lyase_3 PF12708.7 gi|219851486|ref|YP_002465918.1| - 3.5e-39 134.9 4.3 3.5e-39 134.9 4.3 1.8 2 0 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|219851486|ref|YP_002465918.1| - 1.5e-12 47.7 23.8 2.5e-06 27.4 2.4 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|219851486|ref|YP_002465918.1| - 1.4e-07 31.1 16.4 0.00063 19.1 9.3 2.9 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) End_N_terminal PF12218.8 gi|219851486|ref|YP_002465918.1| - 0.0013 18.4 0.0 0.0034 17.0 0.0 1.7 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase DUF354 PF04007.12 gi|219851487|ref|YP_002465919.1| - 2e-13 50.2 0.1 2.7e-13 49.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glycos_transf_1 PF00534.20 gi|219851487|ref|YP_002465919.1| - 0.0042 16.6 0.0 0.0095 15.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 PIG-L PF02585.17 gi|219851488|ref|YP_002465920.1| - 1.6e-16 61.1 0.0 2.2e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase ATPgrasp_Ter PF15632.6 gi|219851489|ref|YP_002465921.1| - 1.7e-35 121.6 0.0 2.7e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|219851489|ref|YP_002465921.1| - 1.5e-06 28.4 0.0 2.6e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|219851489|ref|YP_002465921.1| - 8.5e-06 25.4 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|219851489|ref|YP_002465921.1| - 0.0072 15.9 0.0 0.05 13.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|219851489|ref|YP_002465921.1| - 0.0086 15.4 0.0 0.13 11.5 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp Dehydratase_MU PF02288.15 gi|219851489|ref|YP_002465921.1| - 0.099 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Dehydratase medium subunit PHP PF02811.19 gi|219851490|ref|YP_002465922.1| - 2.8e-11 44.0 0.0 6.6e-11 42.8 0.0 1.6 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|219851490|ref|YP_002465922.1| - 0.025 14.3 0.0 0.086 12.6 0.0 1.9 2 0 0 2 2 2 0 PHP-associated Asn_synthase PF00733.21 gi|219851491|ref|YP_002465923.1| - 4.4e-65 220.7 0.0 5.6e-65 220.3 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|219851491|ref|YP_002465923.1| - 2.7e-44 150.0 0.0 4.3e-44 149.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|219851491|ref|YP_002465923.1| - 2.8e-41 140.9 0.0 4.5e-41 140.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|219851491|ref|YP_002465923.1| - 3.5e-05 23.4 0.1 6.4e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Aluminium induced protein Glycos_transf_1 PF00534.20 gi|219851492|ref|YP_002465924.1| - 8.7e-37 126.3 0.0 1.5e-36 125.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219851492|ref|YP_002465924.1| - 1.9e-28 99.5 0.0 3.1e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219851492|ref|YP_002465924.1| - 2e-16 60.4 0.0 3.6e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|219851492|ref|YP_002465924.1| - 4.4e-10 39.8 0.0 7.3e-09 35.9 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|219851492|ref|YP_002465924.1| - 4.6e-09 36.4 0.0 8.7e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|219851492|ref|YP_002465924.1| - 3.2e-08 34.2 0.0 4.7e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain FAD_syn PF06574.12 gi|219851492|ref|YP_002465924.1| - 0.033 14.1 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase DUF3492 PF11997.8 gi|219851492|ref|YP_002465924.1| - 0.13 12.0 0.0 0.33 10.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) NHL PF01436.21 gi|219851493|ref|YP_002465925.1| - 2e-48 160.0 18.4 8.3e-10 38.2 0.1 6.8 7 0 0 7 7 7 6 NHL repeat DUF5128 PF17170.4 gi|219851493|ref|YP_002465925.1| - 4.7e-16 58.8 0.2 0.0011 18.1 0.0 4.7 1 1 4 5 5 5 5 6-bladed beta-propeller SGL PF08450.12 gi|219851493|ref|YP_002465925.1| - 8e-16 58.4 13.0 0.0015 18.2 0.1 5.5 1 1 5 6 6 6 5 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219851493|ref|YP_002465925.1| - 9e-15 54.4 15.3 0.02 14.9 0.1 6.5 6 0 0 6 6 6 4 Beta-propeller repeat PsbR PF04725.12 gi|219851493|ref|YP_002465925.1| - 1.5e-06 28.5 28.0 0.035 14.5 0.3 6.1 1 1 5 6 6 6 3 Photosystem II 10 kDa polypeptide PsbR Dockerin_1 PF00404.18 gi|219851493|ref|YP_002465925.1| - 7.2e-06 26.1 1.5 1.3e-05 25.3 1.5 1.4 1 0 0 1 1 1 1 Dockerin type I domain Ldl_recept_b PF00058.17 gi|219851493|ref|YP_002465925.1| - 6.4e-05 23.4 0.0 67 4.1 0.0 6.1 6 0 0 6 6 6 0 Low-density lipoprotein receptor repeat class B US22 PF02393.16 gi|219851493|ref|YP_002465925.1| - 0.00019 21.7 9.8 17 5.7 0.0 5.9 1 1 4 6 6 6 0 US22 like EF-hand_1 PF00036.32 gi|219851493|ref|YP_002465925.1| - 0.00024 20.4 3.4 0.013 15.0 0.5 2.6 2 0 0 2 2 2 1 EF hand Death_2 PF14786.6 gi|219851493|ref|YP_002465925.1| - 0.00044 20.2 0.0 20 5.1 0.0 4.6 3 1 1 5 5 5 0 Tube Death domain Phytase-like PF13449.6 gi|219851493|ref|YP_002465925.1| - 0.00045 20.3 2.1 6.1 6.7 0.0 4.9 2 2 4 6 6 6 1 Esterase-like activity of phytase SNAP-25 PF00835.19 gi|219851493|ref|YP_002465925.1| - 0.0011 19.2 1.2 43 4.5 0.0 5.1 5 1 1 6 6 6 0 SNAP-25 family EF-hand_6 PF13405.6 gi|219851493|ref|YP_002465925.1| - 0.0011 18.7 1.2 0.22 11.5 0.2 2.6 2 0 0 2 2 2 1 EF-hand domain SdiA-regulated PF06977.11 gi|219851493|ref|YP_002465925.1| - 0.11 11.7 3.2 43 3.2 0.0 4.6 5 1 1 6 6 6 0 SdiA-regulated EF-hand_8 PF13833.6 gi|219851493|ref|YP_002465925.1| - 0.23 11.4 2.5 0.21 11.5 0.3 2.1 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.6 gi|219851493|ref|YP_002465925.1| - 0.38 11.2 2.6 6.5 7.3 2.7 2.2 1 1 0 1 1 1 0 EF-hand domain pair Fer4_11 PF13247.6 gi|219851494|ref|YP_002465926.1| - 6.4e-23 80.8 10.2 6.4e-23 80.8 10.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219851494|ref|YP_002465926.1| - 2.8e-14 53.4 27.3 3.9e-07 30.6 9.6 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851494|ref|YP_002465926.1| - 7.5e-12 45.2 44.6 2.2e-05 24.6 11.6 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851494|ref|YP_002465926.1| - 8.9e-11 41.4 39.6 9.4e-05 22.3 4.7 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|219851494|ref|YP_002465926.1| - 1.7e-09 37.1 38.4 8.3e-06 25.4 4.2 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219851494|ref|YP_002465926.1| - 9.2e-09 36.1 20.2 0.00065 20.6 3.2 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|219851494|ref|YP_002465926.1| - 2.7e-08 33.8 28.6 0.00045 20.3 15.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851494|ref|YP_002465926.1| - 9.8e-07 28.5 34.8 0.01 15.9 2.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219851494|ref|YP_002465926.1| - 0.00059 20.1 36.2 0.00088 19.6 1.7 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219851494|ref|YP_002465926.1| - 0.00075 19.6 30.4 0.0079 16.3 5.5 3.7 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851494|ref|YP_002465926.1| - 0.0014 19.0 25.6 0.0031 17.9 7.4 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851494|ref|YP_002465926.1| - 0.022 15.3 29.0 0.3 11.7 1.7 4.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fe_dep_repr_C PF02742.15 gi|219851494|ref|YP_002465926.1| - 0.086 12.9 2.2 5.8 7.1 0.1 2.5 1 1 1 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain Fer4_3 PF12798.7 gi|219851494|ref|YP_002465926.1| - 0.2 12.7 43.6 0.33 12.0 6.2 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|219851494|ref|YP_002465926.1| - 1.9 8.3 29.1 1.2 9.0 4.9 3.6 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Prismane PF03063.20 gi|219851495|ref|YP_002465927.1| - 5.8e-169 563.1 0.2 6.7e-169 562.8 0.2 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family 2Fe-2S_thioredx PF01257.19 gi|219851496|ref|YP_002465928.1| - 1.1e-43 148.6 0.0 4e-42 143.5 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_51K PF01512.17 gi|219851497|ref|YP_002465929.1| - 5.2e-44 149.8 0.0 7.8e-44 149.2 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|219851497|ref|YP_002465929.1| - 5.9e-29 100.0 0.0 1.2e-28 99.0 0.0 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 gi|219851497|ref|YP_002465929.1| - 0.049 13.5 5.7 0.04 13.8 2.5 2.5 3 0 0 3 3 3 0 SLBB domain 2Fe-2S_thioredx PF01257.19 gi|219851497|ref|YP_002465929.1| - 0.059 13.2 0.0 0.09 12.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.11 gi|219851497|ref|YP_002465929.1| - 0.18 12.2 0.0 0.33 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) Fer2_4 PF13510.6 gi|219851498|ref|YP_002465930.1| - 3.4e-17 62.3 0.6 9.4e-17 60.8 0.6 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|219851498|ref|YP_002465930.1| - 7.1e-08 32.3 1.8 7.1e-08 32.3 1.8 3.2 4 1 0 4 4 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.6 gi|219851498|ref|YP_002465930.1| - 2.7e-07 30.6 5.1 2.7e-07 30.6 5.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219851498|ref|YP_002465930.1| - 1.1e-06 29.1 17.2 2.4e-05 24.8 4.5 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851498|ref|YP_002465930.1| - 1.4e-06 28.4 15.1 0.00027 21.0 3.5 3.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219851498|ref|YP_002465930.1| - 2e-05 24.6 13.4 0.0015 18.6 2.1 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851498|ref|YP_002465930.1| - 4.3e-05 23.4 15.5 0.0017 18.3 5.5 4.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.27 gi|219851498|ref|YP_002465930.1| - 4.7e-05 23.0 5.8 4.7e-05 23.0 5.8 3.7 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219851498|ref|YP_002465930.1| - 7.8e-05 23.1 7.0 7.8e-05 23.1 7.0 3.0 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851498|ref|YP_002465930.1| - 9.8e-05 23.2 9.0 0.0029 18.5 1.2 3.1 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|219851498|ref|YP_002465930.1| - 0.00023 21.3 4.5 0.074 13.3 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219851498|ref|YP_002465930.1| - 0.0017 18.7 11.4 0.013 15.9 3.0 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219851498|ref|YP_002465930.1| - 0.0047 17.0 4.3 0.0047 17.0 4.3 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219851498|ref|YP_002465930.1| - 0.0071 16.9 16.4 0.12 12.9 0.1 3.7 3 1 2 5 5 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851498|ref|YP_002465930.1| - 0.01 16.7 6.0 0.01 16.7 6.0 4.1 4 0 0 4 4 3 0 4Fe-4S binding domain Clr5 PF14420.6 gi|219851498|ref|YP_002465930.1| - 0.12 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Clr5 domain Fer4_15 PF13459.6 gi|219851498|ref|YP_002465930.1| - 0.17 12.6 9.1 3.1 8.6 0.4 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|219851498|ref|YP_002465930.1| - 0.18 12.6 12.8 0.19 12.6 1.6 3.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|219851499|ref|YP_002465931.1| - 1.5e-13 50.9 0.0 2.7e-13 50.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|219851499|ref|YP_002465931.1| - 1.5e-09 38.0 0.0 3.7e-09 36.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|219851499|ref|YP_002465931.1| - 5.6e-09 35.8 0.1 0.00018 21.0 0.0 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|219851499|ref|YP_002465931.1| - 5.2e-08 32.4 0.1 7.3e-07 28.7 0.0 2.5 1 1 1 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|219851499|ref|YP_002465931.1| - 2.6e-06 27.1 0.0 0.022 14.2 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_16 PF13191.6 gi|219851499|ref|YP_002465931.1| - 0.00046 20.6 0.0 0.00086 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|219851499|ref|YP_002465931.1| - 0.0019 18.7 0.0 0.0028 18.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ATP_bind_1 PF03029.17 gi|219851499|ref|YP_002465931.1| - 0.0085 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|219851499|ref|YP_002465931.1| - 0.0087 16.6 0.0 0.03 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|219851499|ref|YP_002465931.1| - 0.0089 16.0 0.2 4.5 7.3 0.0 2.2 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|219851499|ref|YP_002465931.1| - 0.0091 15.9 0.4 0.02 14.8 0.4 1.5 1 0 0 1 1 1 1 NTPase AAA_24 PF13479.6 gi|219851499|ref|YP_002465931.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|219851499|ref|YP_002465931.1| - 0.021 14.5 0.2 0.15 11.6 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|219851499|ref|YP_002465931.1| - 0.021 13.8 0.2 0.043 12.8 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF498 PF04430.14 gi|219851499|ref|YP_002465931.1| - 0.026 14.6 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) PGM_PMM_II PF02879.16 gi|219851499|ref|YP_002465931.1| - 0.028 15.0 0.0 0.069 13.8 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAA_5 PF07728.14 gi|219851499|ref|YP_002465931.1| - 0.031 14.3 0.0 0.072 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|219851499|ref|YP_002465931.1| - 0.036 13.8 0.1 0.095 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|219851499|ref|YP_002465931.1| - 0.046 13.1 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DAP3 PF10236.9 gi|219851499|ref|YP_002465931.1| - 0.052 12.7 0.0 0.076 12.2 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_28 PF13521.6 gi|219851499|ref|YP_002465931.1| - 0.054 13.7 0.4 0.11 12.8 0.4 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|219851499|ref|YP_002465931.1| - 0.062 12.5 0.1 0.099 11.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain PEP-utilizers PF00391.23 gi|219851499|ref|YP_002465931.1| - 0.084 12.6 0.1 0.47 10.2 0.1 2.2 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain AAA_29 PF13555.6 gi|219851499|ref|YP_002465931.1| - 0.088 12.6 0.2 0.19 11.5 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|219851499|ref|YP_002465931.1| - 0.09 12.0 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_22 PF13401.6 gi|219851499|ref|YP_002465931.1| - 0.095 13.0 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|219851499|ref|YP_002465931.1| - 0.1 12.2 0.1 0.25 10.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|219851499|ref|YP_002465931.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein APS_kinase PF01583.20 gi|219851499|ref|YP_002465931.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Ras PF00071.22 gi|219851499|ref|YP_002465931.1| - 0.15 11.7 0.1 0.36 10.4 0.0 1.6 2 0 0 2 2 2 0 Ras family AAA_21 PF13304.6 gi|219851499|ref|YP_002465931.1| - 0.18 11.6 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system CLP1_P PF16575.5 gi|219851499|ref|YP_002465931.1| - 0.18 11.6 0.0 0.41 10.4 0.0 1.5 2 0 0 2 2 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CHAT PF12770.7 gi|219851500|ref|YP_002465932.1| - 4.5e-50 170.7 0.0 7.7e-50 169.9 0.0 1.4 1 0 0 1 1 1 1 CHAT domain TPR_10 PF13374.6 gi|219851500|ref|YP_002465932.1| - 1.4e-11 43.8 23.1 0.042 13.7 0.1 8.3 10 0 0 10 10 10 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219851500|ref|YP_002465932.1| - 4e-08 33.4 15.0 0.82 10.0 0.2 9.7 6 3 4 10 10 10 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219851500|ref|YP_002465932.1| - 0.00023 20.8 21.6 0.18 11.7 0.0 9.2 11 0 0 11 11 11 2 Tetratricopeptide repeat SNAP PF14938.6 gi|219851500|ref|YP_002465932.1| - 0.0019 17.7 18.3 0.036 13.5 0.4 4.3 1 1 4 5 5 5 3 Soluble NSF attachment protein, SNAP TPR_11 PF13414.6 gi|219851500|ref|YP_002465932.1| - 0.0065 16.1 12.3 0.59 9.9 0.4 7.4 8 1 0 8 8 8 1 TPR repeat TPR_2 PF07719.17 gi|219851500|ref|YP_002465932.1| - 0.0074 16.3 13.9 0.22 11.7 0.1 7.5 11 0 0 11 11 11 1 Tetratricopeptide repeat Sel1 PF08238.12 gi|219851500|ref|YP_002465932.1| - 0.049 14.3 0.0 1.1 10.1 0.0 3.3 3 0 0 3 3 3 0 Sel1 repeat TPR_MalT PF17874.1 gi|219851500|ref|YP_002465932.1| - 0.053 12.9 0.2 0.34 10.2 0.0 2.4 2 1 1 3 3 3 0 MalT-like TPR region SMBP PF16785.5 gi|219851500|ref|YP_002465932.1| - 0.08 13.2 4.6 0.48 10.7 0.1 3.8 3 1 1 4 4 4 0 Small metal-binding protein TPR_19 PF14559.6 gi|219851500|ref|YP_002465932.1| - 0.099 13.2 0.2 6.8 7.3 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219851500|ref|YP_002465932.1| - 1.8 9.0 10.4 9.2 6.8 0.1 6.3 6 0 0 6 6 6 0 Tetratricopeptide repeat MatE PF01554.18 gi|219851501|ref|YP_002465933.1| - 3.9e-26 91.6 14.5 5.1e-26 91.2 14.5 1.2 1 0 0 1 1 1 1 MatE Acetyltransf_1 PF00583.25 gi|219851505|ref|YP_002465937.1| - 1e-08 35.4 0.0 1.8e-08 34.6 0.0 1.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|219851505|ref|YP_002465937.1| - 1.2e-06 28.5 0.0 1.6e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|219851505|ref|YP_002465937.1| - 6.3e-05 23.1 0.0 8e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|219851505|ref|YP_002465937.1| - 0.003 18.0 0.0 0.0043 17.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TetR_N PF00440.23 gi|219851506|ref|YP_002465938.1| - 3.3e-19 68.4 0.2 5.6e-19 67.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.6 gi|219851506|ref|YP_002465938.1| - 0.0019 18.0 0.0 0.0034 17.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|219851506|ref|YP_002465938.1| - 0.0051 17.0 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 gi|219851506|ref|YP_002465938.1| - 0.0061 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|219851506|ref|YP_002465938.1| - 0.033 14.2 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|219851506|ref|YP_002465938.1| - 0.036 13.6 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|219851506|ref|YP_002465938.1| - 0.056 13.1 0.0 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|219851506|ref|YP_002465938.1| - 0.058 13.3 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA_lid_7 PF17867.1 gi|219851506|ref|YP_002465938.1| - 0.079 13.2 0.0 0.32 11.2 0.0 2.0 2 0 0 2 2 2 0 Midasin AAA lid domain Phage_terminase PF10668.9 gi|219851506|ref|YP_002465938.1| - 0.085 12.9 0.0 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 Phage terminase small subunit TetR_C_7 PF14246.6 gi|219851506|ref|YP_002465938.1| - 0.092 12.8 0.0 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain HTH_29 PF13551.6 gi|219851506|ref|YP_002465938.1| - 0.096 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix P22_Cro PF14549.6 gi|219851506|ref|YP_002465938.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_28 PF13518.6 gi|219851506|ref|YP_002465938.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PBCV_basic_adap PF08789.10 gi|219851506|ref|YP_002465938.1| - 0.19 11.9 2.2 0.21 11.7 0.7 1.8 2 0 0 2 2 2 0 PBCV-specific basic adaptor domain HTH_IclR PF09339.10 gi|219851506|ref|YP_002465938.1| - 0.2 11.5 0.1 0.43 10.4 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain COX4_pro_2 PF07835.12 gi|219851507|ref|YP_002465939.1| - 0.019 15.0 0.6 0.024 14.8 0.6 1.1 1 0 0 1 1 1 0 Bacterial aa3 type cytochrome c oxidase subunit IV FMN_red PF03358.15 gi|219851508|ref|YP_002465940.1| - 5e-28 97.8 0.0 6.9e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219851508|ref|YP_002465940.1| - 6.5e-18 65.2 0.0 9.2e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold TspO_MBR PF03073.15 gi|219851509|ref|YP_002465941.1| - 0.097 12.7 0.9 0.11 12.6 0.9 1.1 1 0 0 1 1 1 0 TspO/MBR family Kelch_4 PF13418.6 gi|219851510|ref|YP_002465942.1| - 7.8e-40 134.7 20.2 2.8e-08 33.6 0.5 6.4 6 0 0 6 6 6 6 Galactose oxidase, central domain Kelch_6 PF13964.6 gi|219851510|ref|YP_002465942.1| - 1.5e-29 101.3 4.8 0.00075 19.7 0.0 6.5 6 0 0 6 6 6 6 Kelch motif Kelch_5 PF13854.6 gi|219851510|ref|YP_002465942.1| - 2.5e-23 81.6 0.3 0.0044 17.0 0.0 6.4 6 0 0 6 6 6 6 Kelch motif Kelch_2 PF07646.15 gi|219851510|ref|YP_002465942.1| - 5.3e-21 73.7 12.9 0.0065 16.4 0.1 6.8 6 0 0 6 6 6 6 Kelch motif Kelch_1 PF01344.25 gi|219851510|ref|YP_002465942.1| - 4.7e-20 70.9 0.1 0.0034 16.9 0.0 6.6 6 0 0 6 6 6 6 Kelch motif Glyoxal_oxid_N PF07250.11 gi|219851510|ref|YP_002465942.1| - 2.4e-12 46.6 6.0 0.00018 20.8 0.1 4.0 1 1 3 4 4 4 4 Glyoxal oxidase N-terminus Kelch_3 PF13415.6 gi|219851510|ref|YP_002465942.1| - 3.9e-12 46.1 36.4 0.0003 21.0 2.7 6.5 6 0 0 6 6 6 5 Galactose oxidase, central domain BNR_2 PF13088.6 gi|219851510|ref|YP_002465942.1| - 2.9e-11 43.2 34.1 1.1e-06 28.1 9.4 3.2 1 1 3 4 4 4 3 BNR repeat-like domain Sortilin-Vps10 PF15902.5 gi|219851510|ref|YP_002465942.1| - 8.8e-11 41.2 1.2 3.1e-05 23.0 0.0 2.4 1 1 0 2 2 2 2 Sortilin, neurotensin receptor 3, PKD PF00801.20 gi|219851510|ref|YP_002465942.1| - 9e-09 35.1 8.9 2.2e-05 24.2 0.2 2.9 2 0 0 2 2 2 2 PKD domain BNR PF02012.20 gi|219851510|ref|YP_002465942.1| - 4.6e-08 31.9 29.3 0.27 11.4 1.0 6.0 5 0 0 5 5 5 5 BNR/Asp-box repeat AOC_like PF18678.1 gi|219851510|ref|YP_002465942.1| - 6.7e-08 32.2 3.8 0.28 10.8 0.0 5.3 2 1 3 5 5 5 3 Allene oxide cyclase barrel like domain Secretin PF00263.21 gi|219851510|ref|YP_002465942.1| - 2.4e-05 24.0 0.0 16 5.1 0.0 4.6 4 1 1 5 5 5 0 Bacterial type II and III secretion system protein Dockerin_1 PF00404.18 gi|219851510|ref|YP_002465942.1| - 7.7e-05 22.8 2.6 0.00014 21.9 1.7 1.9 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219851510|ref|YP_002465942.1| - 0.00031 20.4 1.2 0.042 13.8 0.1 2.7 2 0 0 2 2 2 1 EF-hand domain DUF5122 PF17164.4 gi|219851510|ref|YP_002465942.1| - 0.0012 19.0 9.6 23 5.4 0.1 6.6 6 0 0 6 6 6 0 Domain of unknown function (DUF5122) beta-propeller EF-hand_1 PF00036.32 gi|219851510|ref|YP_002465942.1| - 0.0029 17.1 8.1 0.038 13.5 0.2 2.9 3 0 0 3 3 3 2 EF hand BNR_6 PF15899.5 gi|219851510|ref|YP_002465942.1| - 0.014 15.4 6.6 42 4.6 0.1 5.2 5 0 0 5 5 5 0 BNR-Asp box repeat EF-hand_8 PF13833.6 gi|219851510|ref|YP_002465942.1| - 0.037 13.9 3.7 0.61 10.0 0.3 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.6 gi|219851510|ref|YP_002465942.1| - 1.1 9.7 2.6 9.9 6.7 2.2 2.2 1 1 1 2 2 2 0 EF-hand domain pair 5_nucleotid_C PF02872.18 gi|219851511|ref|YP_002465943.1| - 1.2e-44 152.3 0.1 2.6e-44 151.2 0.1 1.6 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|219851511|ref|YP_002465943.1| - 2.3e-10 41.3 0.0 3.8e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Phage_integrase PF00589.22 gi|219851512|ref|YP_002465944.1| - 9.2e-08 32.1 0.1 1.9e-07 31.1 0.1 1.6 1 1 0 1 1 1 1 Phage integrase family TBP PF00352.21 gi|219851515|ref|YP_002465947.1| - 2.3e-50 168.5 0.0 8.9e-25 86.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|219851515|ref|YP_002465947.1| - 1.2e-08 34.9 0.0 6.4e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|219851515|ref|YP_002465947.1| - 0.02 14.5 0.0 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S DUF3389 PF11869.8 gi|219851515|ref|YP_002465947.1| - 0.13 12.4 0.5 24 5.2 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3389) Glyoxalase PF00903.25 gi|219851516|ref|YP_002465948.1| - 5.9e-05 23.3 0.0 9.6e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|219851516|ref|YP_002465948.1| - 0.0039 18.0 0.0 0.0053 17.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Beta-lactamase PF00144.24 gi|219851518|ref|YP_002465950.1| - 4.9e-65 219.9 0.1 1.1e-64 218.8 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase Pentapeptide_4 PF13599.6 gi|219851519|ref|YP_002465951.1| - 2.7e-32 110.8 13.4 4.6e-10 39.5 0.1 3.4 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|219851519|ref|YP_002465951.1| - 2.6e-28 97.2 15.3 1.9e-07 30.6 2.7 5.7 2 1 4 7 7 7 6 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 gi|219851519|ref|YP_002465951.1| - 3.5e-17 62.3 12.9 8.8e-06 25.8 5.2 5.2 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) CcmH PF03918.14 gi|219851519|ref|YP_002465951.1| - 0.034 13.4 0.1 0.063 12.6 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein DUF4738 PF15889.5 gi|219851519|ref|YP_002465951.1| - 0.063 13.1 0.1 11 5.8 0.0 3.0 2 2 1 3 3 3 0 Domain of unknown function (DUF4738) PadR PF03551.14 gi|219851520|ref|YP_002465952.1| - 1.2e-20 73.2 0.5 1.5e-20 73.0 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Lysozyme_like PF13702.6 gi|219851520|ref|YP_002465952.1| - 0.013 15.3 0.1 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 Lysozyme-like HTH_34 PF13601.6 gi|219851520|ref|YP_002465952.1| - 0.03 14.5 0.0 0.041 14.1 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain TetR_C_11 PF16859.5 gi|219851522|ref|YP_002465954.1| - 1.6e-21 76.7 0.6 6.1e-20 71.6 0.1 2.2 2 0 0 2 2 2 2 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 gi|219851522|ref|YP_002465954.1| - 3e-11 42.9 0.6 1.1e-10 41.1 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family MFS_1 PF07690.16 gi|219851523|ref|YP_002465955.1| - 1.1e-59 202.1 67.8 1.2e-52 179.0 44.9 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|219851523|ref|YP_002465955.1| - 1.5e-11 43.4 30.0 4.8e-09 35.2 19.5 2.2 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 gi|219851523|ref|YP_002465955.1| - 2.1e-07 30.2 15.5 2.1e-07 30.2 15.5 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|219851523|ref|YP_002465955.1| - 9e-06 24.3 24.6 0.0016 16.9 10.8 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.6 gi|219851523|ref|YP_002465955.1| - 4.1e-05 22.3 33.3 0.0029 16.2 6.8 3.6 1 1 0 2 2 2 2 MFS/sugar transport protein Claudin_2 PF13903.6 gi|219851523|ref|YP_002465955.1| - 0.045 13.5 0.3 0.045 13.5 0.3 2.8 3 0 0 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction 5_nucleotid_C PF02872.18 gi|219851524|ref|YP_002465956.1| - 2.3e-43 148.1 0.1 5e-43 147.0 0.1 1.6 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|219851524|ref|YP_002465956.1| - 7.8e-09 36.3 0.1 1.9e-08 35.0 0.0 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase PAS_9 PF13426.7 gi|219851526|ref|YP_002465958.1| - 2.2e-48 162.8 1.2 1.1e-16 61.0 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219851526|ref|YP_002465958.1| - 5e-37 126.4 0.0 2.1e-12 47.0 0.0 4.6 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.10 gi|219851526|ref|YP_002465958.1| - 3e-33 114.3 0.0 1.9e-11 44.2 0.0 4.7 4 1 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|219851526|ref|YP_002465958.1| - 8.3e-28 95.9 0.0 8.7e-08 32.0 0.0 4.6 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|219851526|ref|YP_002465958.1| - 1.5e-14 54.4 0.2 8.8e-14 52.0 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219851526|ref|YP_002465958.1| - 6.1e-11 42.5 0.0 0.00038 20.7 0.0 4.0 4 0 0 4 4 4 2 PAS fold SPOB_a PF14689.6 gi|219851526|ref|YP_002465958.1| - 0.00051 19.7 0.4 0.0011 18.6 0.4 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain MEKHLA PF08670.11 gi|219851526|ref|YP_002465958.1| - 0.00061 19.7 0.0 0.45 10.4 0.0 2.7 3 0 0 3 3 3 2 MEKHLA domain LMBR1 PF04791.16 gi|219851526|ref|YP_002465958.1| - 0.0083 15.1 0.0 0.029 13.3 0.0 1.7 1 1 1 2 2 2 1 LMBR1-like membrane protein PAS_7 PF12860.7 gi|219851526|ref|YP_002465958.1| - 0.014 15.5 0.9 1.6 9.0 0.0 4.1 5 1 0 5 5 5 0 PAS fold YabA PF06156.13 gi|219851526|ref|YP_002465958.1| - 0.11 13.2 0.3 0.11 13.2 0.3 1.8 2 0 0 2 2 2 0 Initiation control protein YabA HATPase_c_2 PF13581.6 gi|219851526|ref|YP_002465958.1| - 0.14 12.1 0.0 0.43 10.6 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain RibD_C PF01872.17 gi|219851527|ref|YP_002465959.1| - 7.2e-19 68.4 0.2 7.2e-17 61.9 0.2 2.0 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.19 gi|219851527|ref|YP_002465959.1| - 1.4e-05 24.9 0.0 1.8e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase Glyoxalase_6 PF18029.1 gi|219851529|ref|YP_002465961.1| - 4.9e-08 33.7 0.0 8.3e-08 33.0 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|219851529|ref|YP_002465961.1| - 0.0021 18.2 0.0 0.0035 17.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|219851529|ref|YP_002465961.1| - 0.076 13.3 0.0 5.8 7.2 0.0 2.2 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Peptidase_S9 PF00326.21 gi|219851530|ref|YP_002465962.1| - 8.2e-60 201.9 0.1 1.6e-59 200.9 0.1 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|219851530|ref|YP_002465962.1| - 1.3e-20 72.8 8.7 3.3e-08 33.2 0.1 6.2 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|219851530|ref|YP_002465962.1| - 1.6e-08 34.5 0.3 1.1e-05 25.2 0.3 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|219851530|ref|YP_002465962.1| - 3e-07 30.4 2.2 6.4e-05 22.7 1.6 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Esterase PF00756.20 gi|219851530|ref|YP_002465962.1| - 1.8e-05 24.5 0.3 4.6e-05 23.2 0.3 1.6 1 1 0 1 1 1 1 Putative esterase DPPIV_N PF00930.21 gi|219851530|ref|YP_002465962.1| - 3e-05 23.0 0.0 0.4 9.4 0.0 4.0 3 2 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region SGL PF08450.12 gi|219851530|ref|YP_002465962.1| - 0.00027 20.6 0.1 0.17 11.4 0.0 2.8 2 1 0 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region Peptidase_S9_N PF02897.15 gi|219851530|ref|YP_002465962.1| - 0.0036 16.2 0.1 0.032 13.0 0.0 2.5 3 0 0 3 3 3 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|219851530|ref|YP_002465962.1| - 0.014 14.7 0.0 2.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|219851530|ref|YP_002465962.1| - 0.016 13.9 0.1 1.1 7.9 0.1 2.2 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) Lactonase PF10282.9 gi|219851530|ref|YP_002465962.1| - 0.017 14.4 0.0 0.075 12.3 0.0 1.9 2 0 0 2 2 2 0 Lactonase, 7-bladed beta-propeller DUF5050 PF16472.5 gi|219851530|ref|YP_002465962.1| - 0.028 13.7 0.0 0.66 9.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5050) DUF2920 PF11144.8 gi|219851530|ref|YP_002465962.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) Metallophos PF00149.28 gi|219851531|ref|YP_002465963.1| - 2.5e-17 64.0 0.1 3.7e-17 63.5 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Serpin PF00079.20 gi|219851532|ref|YP_002465964.1| - 9.8e-117 390.4 0.0 1.1e-116 390.2 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Arch_flagellin PF01917.16 gi|219851533|ref|YP_002465965.1| - 5.4e-27 95.0 2.5 6.1e-27 94.8 2.5 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2808 PF10989.8 gi|219851533|ref|YP_002465965.1| - 0.0033 17.4 0.1 0.0098 15.9 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2808) ParE_toxin PF05016.15 gi|219851537|ref|YP_002465969.1| - 1.1e-05 25.9 0.4 1.4e-05 25.6 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RelB_N PF18506.1 gi|219851538|ref|YP_002465970.1| - 1.1e-12 47.5 0.8 1.3e-12 47.3 0.8 1.1 1 0 0 1 1 1 1 RelB Antitoxin alpha helical domain PhdYeFM_antitox PF02604.19 gi|219851538|ref|YP_002465970.1| - 0.0018 18.0 0.1 0.013 15.2 0.1 1.9 1 1 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system NosD PF05048.13 gi|219851541|ref|YP_002465973.1| - 2.4e-33 115.4 8.3 2.4e-33 115.4 8.3 1.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219851541|ref|YP_002465973.1| - 9.6e-12 45.0 16.0 2.3e-07 30.8 9.8 2.8 1 1 1 2 2 2 2 Right handed beta helix region Dockerin_1 PF00404.18 gi|219851541|ref|YP_002465973.1| - 4.4e-06 26.8 2.8 5.7e-05 23.2 0.3 3.1 3 0 0 3 3 3 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|219851541|ref|YP_002465973.1| - 7.9e-05 21.9 10.0 0.18 11.4 0.0 4.1 4 0 0 4 4 4 3 EF hand EF-hand_6 PF13405.6 gi|219851541|ref|YP_002465973.1| - 0.0002 21.0 8.8 0.28 11.2 0.0 4.1 4 0 0 4 4 4 2 EF-hand domain EF-hand_7 PF13499.6 gi|219851541|ref|YP_002465973.1| - 1.6 9.3 3.2 12 6.4 0.6 3.1 2 1 0 2 2 2 0 EF-hand domain pair Cas_APE2256 PF09651.10 gi|219851543|ref|YP_002465975.1| - 3.6e-05 23.7 1.2 0.00023 21.1 0.1 2.2 2 1 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) DUF4364 PF14277.6 gi|219851543|ref|YP_002465975.1| - 0.0066 16.2 0.2 0.04 13.7 0.0 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4364) Rep_2 PF01719.17 gi|219851543|ref|YP_002465975.1| - 0.0085 15.9 3.8 0.43 10.3 0.2 2.4 2 0 0 2 2 2 2 Plasmid replication protein DUF5128 PF17170.4 gi|219851543|ref|YP_002465975.1| - 0.01 15.0 0.5 0.01 15.0 0.5 1.7 2 0 0 2 2 2 0 6-bladed beta-propeller Penicillinase_R PF03965.16 gi|219851543|ref|YP_002465975.1| - 0.042 14.2 0.9 0.096 13.0 0.1 2.1 3 1 0 3 3 3 0 Penicillinase repressor ArsR PF09824.9 gi|219851543|ref|YP_002465975.1| - 0.052 13.1 1.6 0.21 11.2 0.2 2.1 2 0 0 2 2 2 0 ArsR transcriptional regulator TrmB PF01978.19 gi|219851543|ref|YP_002465975.1| - 0.06 13.2 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|219851543|ref|YP_002465975.1| - 0.063 13.3 0.0 0.22 11.5 0.0 2.0 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family SMODS PF18144.1 gi|219851544|ref|YP_002465976.1| - 4.6e-05 23.6 1.5 0.00013 22.2 0.4 2.3 2 1 0 2 2 2 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain NTP_transf_2 PF01909.23 gi|219851544|ref|YP_002465976.1| - 5.7e-05 23.3 0.0 0.00012 22.3 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|219851544|ref|YP_002465976.1| - 0.064 13.4 0.1 0.16 12.1 0.1 1.7 1 1 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase S_2TMBeta PF18153.1 gi|219851545|ref|YP_002465977.1| - 4.8e-55 186.1 3.3 5.7e-55 185.9 3.3 1.0 1 0 0 1 1 1 1 SMODS-associating 2TM, beta-strand rich effector domain TNFR_16_TM PF18422.1 gi|219851545|ref|YP_002465977.1| - 0.1 12.6 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain Phage_holin_5_2 PF16079.5 gi|219851545|ref|YP_002465977.1| - 0.17 12.2 2.2 0.18 12.2 0.3 1.9 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V Methylase_S PF01420.19 gi|219851546|ref|YP_002465978.1| - 9.5e-20 71.5 0.0 7.9e-09 35.9 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|219851547|ref|YP_002465979.1| - 1.7e-60 205.0 0.0 2.3e-60 204.5 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|219851547|ref|YP_002465979.1| - 2.4e-11 44.4 0.0 2.9e-09 37.6 0.0 2.4 1 1 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|219851547|ref|YP_002465979.1| - 1.6e-05 24.7 0.0 5.1e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|219851547|ref|YP_002465979.1| - 0.0029 17.2 0.0 0.0078 15.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|219851547|ref|YP_002465979.1| - 0.02 14.7 0.0 4.1 7.2 0.1 2.2 2 0 0 2 2 2 0 Methyltransferase domain PHO4 PF01384.20 gi|219851549|ref|YP_002465981.1| - 0.47 9.4 1.6 0.6 9.1 1.6 1.1 1 0 0 1 1 1 0 Phosphate transporter family Isochorismatase PF00857.20 gi|219851550|ref|YP_002465982.1| - 6.8e-15 55.7 0.0 1.2e-14 54.9 0.0 1.3 1 1 0 1 1 1 1 Isochorismatase family PKD PF00801.20 gi|219851552|ref|YP_002465984.1| - 7.8e-31 105.7 48.1 2.2e-14 53.1 1.6 6.3 6 1 0 6 6 6 4 PKD domain CBM_6 PF03422.15 gi|219851552|ref|YP_002465984.1| - 2.9e-27 95.4 2.2 2.9e-27 95.4 2.2 5.9 3 3 2 6 6 6 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219851552|ref|YP_002465984.1| - 4e-14 52.7 0.2 4e-14 52.7 0.2 2.6 2 1 1 3 3 3 1 DUF5010 C-terminal domain PKD_3 PF16820.5 gi|219851552|ref|YP_002465984.1| - 6.3e-05 22.6 8.3 0.12 12.1 0.0 5.0 5 0 0 5 5 5 2 PKD-like domain CBM_35 PF16990.5 gi|219851552|ref|YP_002465984.1| - 7.3e-05 23.0 0.4 7.3e-05 23.0 0.4 3.8 4 0 0 4 4 4 1 Carbohydrate binding module (family 35) CarbopepD_reg_2 PF13715.6 gi|219851552|ref|YP_002465984.1| - 9.2e-05 22.4 11.8 0.026 14.5 0.3 5.4 5 0 0 5 5 5 2 CarboxypepD_reg-like domain MG2 PF01835.19 gi|219851552|ref|YP_002465984.1| - 0.06 13.8 6.8 68 4.0 0.1 5.8 5 1 1 6 6 6 0 MG2 domain ThiC-associated PF13667.6 gi|219851552|ref|YP_002465984.1| - 0.34 10.7 3.1 1 9.2 0.0 3.3 3 0 0 3 3 3 0 ThiC-associated domain PAS_4 PF08448.10 gi|219851553|ref|YP_002465985.1| - 3.7e-67 223.5 5.8 4.5e-13 49.4 0.0 6.4 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.7 gi|219851553|ref|YP_002465985.1| - 3e-51 172.0 0.4 4.1e-09 36.6 0.0 6.6 6 0 0 6 6 6 6 PAS domain PAS PF00989.25 gi|219851553|ref|YP_002465985.1| - 4e-49 165.3 2.1 2.9e-11 43.3 0.0 6.8 6 0 0 6 6 6 5 PAS fold PAS_8 PF13188.7 gi|219851553|ref|YP_002465985.1| - 3.7e-30 103.4 0.8 4.6e-05 23.3 0.0 7.2 6 0 0 6 6 6 6 PAS domain HATPase_c PF02518.26 gi|219851553|ref|YP_002465985.1| - 5.1e-26 91.4 0.0 1.4e-25 90.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219851553|ref|YP_002465985.1| - 9.8e-26 89.9 2.6 7.6e-08 32.5 0.0 5.8 6 0 0 6 6 4 4 PAS fold PAS_10 PF13596.6 gi|219851553|ref|YP_002465985.1| - 7.5e-17 61.9 0.0 0.0021 18.6 0.0 5.5 5 0 0 5 5 5 3 PAS domain HisKA PF00512.25 gi|219851553|ref|YP_002465985.1| - 2.2e-10 40.4 0.0 2.2e-10 40.4 0.0 4.1 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|219851553|ref|YP_002465985.1| - 3.5e-06 26.9 0.0 1.1e-05 25.2 0.0 1.9 1 0 0 1 1 1 1 GHKL domain GAF_2 PF13185.6 gi|219851553|ref|YP_002465985.1| - 9.5e-06 26.0 0.4 0.0015 18.8 0.0 4.1 4 1 0 4 4 3 1 GAF domain GAF PF01590.26 gi|219851553|ref|YP_002465985.1| - 7.6e-05 23.4 0.0 0.003 18.2 0.0 3.1 3 0 0 3 3 3 1 GAF domain EzrA PF06160.12 gi|219851553|ref|YP_002465985.1| - 0.0034 15.6 7.3 0.19 9.9 0.5 2.7 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA CC2-LZ PF16516.5 gi|219851553|ref|YP_002465985.1| - 0.006 16.9 8.1 0.19 12.1 0.4 3.5 3 0 0 3 3 2 2 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator UPF0449 PF15136.6 gi|219851553|ref|YP_002465985.1| - 0.018 15.5 12.4 0.56 10.7 2.2 3.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0449 DLP_helical PF18709.1 gi|219851553|ref|YP_002465985.1| - 0.021 14.0 2.8 0.97 8.6 0.3 2.6 2 0 0 2 2 2 0 Dynamin-like helical domain zf-C4H2 PF10146.9 gi|219851553|ref|YP_002465985.1| - 0.032 14.6 6.6 0.24 11.7 1.2 2.8 2 0 0 2 2 2 0 Zinc finger-containing protein DUF2535 PF10751.9 gi|219851553|ref|YP_002465985.1| - 0.073 13.6 0.0 24 5.5 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2535) GAF_3 PF13492.6 gi|219851553|ref|YP_002465985.1| - 0.075 13.4 0.0 0.31 11.4 0.0 2.1 1 0 0 1 1 1 0 GAF domain U3_assoc_6 PF08640.11 gi|219851553|ref|YP_002465985.1| - 0.13 12.4 3.1 6.2 7.0 0.8 2.9 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Mod_r PF07200.13 gi|219851553|ref|YP_002465985.1| - 0.17 12.0 18.0 0.32 11.1 0.3 3.7 4 0 0 4 4 3 0 Modifier of rudimentary (Mod(r)) protein Snapin_Pallidin PF14712.6 gi|219851553|ref|YP_002465985.1| - 0.23 11.9 11.7 3.4 8.2 1.4 3.1 2 0 0 2 2 2 0 Snapin/Pallidin AAA_23 PF13476.6 gi|219851553|ref|YP_002465985.1| - 0.29 11.6 9.2 1.1 9.7 0.1 4.1 3 1 1 4 4 4 0 AAA domain COG2 PF06148.11 gi|219851553|ref|YP_002465985.1| - 0.72 9.9 6.4 4.6 7.3 1.2 2.9 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin-6_N PF09177.11 gi|219851553|ref|YP_002465985.1| - 0.99 10.0 9.2 11 6.6 1.7 3.6 3 0 0 3 3 2 0 Syntaxin 6, N-terminal Bacillus_HBL PF05791.11 gi|219851553|ref|YP_002465985.1| - 1.5 8.6 4.6 23 4.8 0.6 2.6 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) zf-CpG_bind_C PF12269.8 gi|219851553|ref|YP_002465985.1| - 1.7 8.4 3.7 18 5.0 0.4 2.7 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain UPF0231 PF06062.11 gi|219851553|ref|YP_002465985.1| - 1.8 8.9 7.4 1.4 9.3 1.8 3.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0231) TelA PF05816.11 gi|219851553|ref|YP_002465985.1| - 2.6 7.0 12.6 2 7.4 1.4 3.0 3 0 0 3 3 3 0 Toxic anion resistance protein (TelA) DUF2018 PF09442.10 gi|219851553|ref|YP_002465985.1| - 5 8.2 6.0 55 4.8 0.6 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2018) DUF3450 PF11932.8 gi|219851553|ref|YP_002465985.1| - 6 6.1 14.9 1.4 8.2 0.9 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) H-kinase_dim PF02895.14 gi|219851553|ref|YP_002465985.1| - 7.6 7.0 9.3 39 4.7 2.5 3.8 3 0 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain YabA PF06156.13 gi|219851553|ref|YP_002465985.1| - 10 6.9 16.9 3.4 8.3 0.4 4.3 5 0 0 5 5 3 0 Initiation control protein YabA DUF927 PF06048.11 gi|219851554|ref|YP_002465986.1| - 0.037 13.6 0.3 0.046 13.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF927) HATPase_c_4 PF13749.6 gi|219851556|ref|YP_002465988.1| - 1.5e-20 73.2 0.0 3.3e-20 72.0 0.0 1.6 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal DUF4062 PF13271.6 gi|219851556|ref|YP_002465988.1| - 2e-18 66.6 0.0 5.4e-18 65.2 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4062) HTH_11 PF08279.12 gi|219851556|ref|YP_002465988.1| - 0.0035 17.3 0.2 0.0093 15.9 0.2 1.7 1 0 0 1 1 1 1 HTH domain DUF1899 PF08953.11 gi|219851556|ref|YP_002465988.1| - 0.011 15.6 0.0 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1899) HTH_DeoR PF08220.12 gi|219851556|ref|YP_002465988.1| - 0.017 14.9 0.5 0.045 13.5 0.2 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HicA_toxin PF07927.12 gi|219851557|ref|YP_002465989.1| - 0.00015 21.7 0.2 0.00022 21.2 0.2 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Inovirus_Gp2 PF11726.8 gi|219851557|ref|YP_002465989.1| - 0.0051 16.8 0.1 0.0063 16.5 0.1 1.1 1 0 0 1 1 1 1 Inovirus Gp2 zf-C3HC PF07967.13 gi|219851557|ref|YP_002465989.1| - 0.0094 16.0 0.0 0.0094 16.0 0.0 1.2 1 0 0 1 1 1 1 C3HC zinc finger-like BTV_NS2 PF04514.12 gi|219851557|ref|YP_002465989.1| - 0.062 12.1 0.1 0.077 11.8 0.1 1.1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 ATP-synt_ab PF00006.25 gi|219851557|ref|YP_002465989.1| - 0.21 11.2 0.0 0.26 10.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF1828 PF08861.10 gi|219851561|ref|YP_002465993.1| - 6.7e-27 93.6 0.0 1.9e-26 92.1 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF1828 DUF4912 PF16258.5 gi|219851561|ref|YP_002465993.1| - 0.13 12.5 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4912) AAA PF00004.29 gi|219851565|ref|YP_002465997.1| - 7.5e-07 29.6 0.2 5.1e-06 26.9 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|219851565|ref|YP_002465997.1| - 1.9e-05 24.3 0.0 5.1e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 gi|219851565|ref|YP_002465997.1| - 0.00011 22.2 1.9 0.0053 16.8 0.0 3.9 2 2 2 4 4 4 1 AAA domain AAA_22 PF13401.6 gi|219851565|ref|YP_002465997.1| - 0.00013 22.3 0.0 0.0013 19.0 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|219851565|ref|YP_002465997.1| - 0.0011 19.4 0.0 0.008 16.6 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain KAP_NTPase PF07693.14 gi|219851565|ref|YP_002465997.1| - 0.0015 17.8 0.4 0.0042 16.4 0.0 1.8 2 0 0 2 2 2 1 KAP family P-loop domain Torsin PF06309.11 gi|219851565|ref|YP_002465997.1| - 0.017 15.2 0.0 0.048 13.8 0.0 1.7 1 0 0 1 1 1 0 Torsin AAA_17 PF13207.6 gi|219851565|ref|YP_002465997.1| - 0.035 14.5 0.0 0.095 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|219851565|ref|YP_002465997.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.14 gi|219851565|ref|YP_002465997.1| - 0.067 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|219851565|ref|YP_002465997.1| - 0.15 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 NTPase FCD PF07729.12 gi|219851566|ref|YP_002465998.1| - 2.6e-21 76.3 1.6 2.6e-21 76.3 1.6 1.7 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 gi|219851566|ref|YP_002465998.1| - 9.2e-21 73.3 1.4 3e-20 71.6 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|219851566|ref|YP_002465998.1| - 0.011 15.8 0.5 0.036 14.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|219851566|ref|YP_002465998.1| - 0.027 14.1 0.0 0.059 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|219851566|ref|YP_002465998.1| - 0.037 14.4 0.0 0.091 13.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|219851566|ref|YP_002465998.1| - 0.053 13.3 0.0 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain ANAPC2 PF08672.11 gi|219851566|ref|YP_002465998.1| - 0.079 13.5 0.5 3.5 8.2 0.0 2.8 2 1 1 3 3 3 0 Anaphase promoting complex (APC) subunit 2 HTH_36 PF13730.6 gi|219851566|ref|YP_002465998.1| - 0.15 12.0 0.0 0.6 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DASH_Duo1 PF08651.10 gi|219851566|ref|YP_002465998.1| - 0.19 11.5 2.1 1.2 9.0 0.8 2.8 2 1 1 3 3 3 0 DASH complex subunit Duo1 MnmE_helical PF12631.7 gi|219851566|ref|YP_002465998.1| - 2.2 8.4 7.1 21 5.2 6.4 2.5 1 1 1 2 2 2 0 MnmE helical domain MFS_1 PF07690.16 gi|219851567|ref|YP_002465999.1| - 9.9e-31 106.9 37.9 9.9e-31 106.9 37.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|219851567|ref|YP_002465999.1| - 0.00013 20.7 9.5 0.00013 20.7 9.5 3.1 2 1 0 2 2 2 1 MFS/sugar transport protein MCU PF04678.13 gi|219851567|ref|YP_002465999.1| - 0.23 11.5 0.3 0.54 10.3 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial calcium uniporter N6_N4_Mtase PF01555.18 gi|219851568|ref|YP_002466000.1| - 5.2e-28 98.3 0.0 6.9e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|219851568|ref|YP_002466000.1| - 0.0026 17.5 0.0 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|219851568|ref|YP_002466000.1| - 0.0048 16.2 0.0 0.35 10.1 0.0 2.1 2 0 0 2 2 2 2 N-6 DNA Methylase MTS PF05175.14 gi|219851568|ref|YP_002466000.1| - 0.017 14.7 0.0 5.2 6.6 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|219851568|ref|YP_002466000.1| - 0.036 13.9 0.0 0.074 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851568|ref|YP_002466000.1| - 0.11 13.1 0.0 2 9.1 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain DUF4349 PF14257.6 gi|219851569|ref|YP_002466001.1| - 3.3e-58 196.6 0.9 3.3e-58 196.6 0.9 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4349) Sec8_exocyst PF04048.14 gi|219851569|ref|YP_002466001.1| - 0.015 15.2 0.3 0.024 14.6 0.3 1.3 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain DUF2730 PF10805.8 gi|219851569|ref|YP_002466001.1| - 0.048 13.8 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) HI0933_like PF03486.14 gi|219851570|ref|YP_002466002.1| - 1.8e-124 415.6 0.0 2e-124 415.4 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|219851570|ref|YP_002466002.1| - 1.5e-17 63.8 0.1 5e-10 39.1 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|219851570|ref|YP_002466002.1| - 1.9e-09 37.2 0.4 5.3e-08 32.5 0.2 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|219851570|ref|YP_002466002.1| - 6.3e-09 35.9 6.1 8.2e-05 22.3 0.1 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|219851570|ref|YP_002466002.1| - 2.2e-07 30.6 0.0 4.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|219851570|ref|YP_002466002.1| - 1.1e-06 28.0 6.2 5.9e-05 22.3 1.6 2.9 1 1 0 2 2 2 2 FAD binding domain GIDA PF01134.22 gi|219851570|ref|YP_002466002.1| - 2.8e-06 26.7 4.0 0.0044 16.2 0.0 2.8 2 1 0 2 2 2 2 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|219851570|ref|YP_002466002.1| - 8.9e-05 21.9 0.1 0.00071 19.0 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|219851570|ref|YP_002466002.1| - 0.00067 19.8 3.3 0.0012 19.0 0.8 2.7 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|219851570|ref|YP_002466002.1| - 0.0026 18.3 0.5 3 8.4 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|219851570|ref|YP_002466002.1| - 0.0095 15.2 3.0 0.035 13.4 3.0 1.9 1 1 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|219851570|ref|YP_002466002.1| - 0.011 15.7 2.1 0.12 12.3 2.1 2.3 1 1 0 1 1 1 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|219851570|ref|YP_002466002.1| - 0.1 11.8 0.5 0.18 11.0 0.5 1.4 1 0 0 1 1 1 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|219851572|ref|YP_002466004.1| - 1.8e-31 109.2 0.1 1.5e-28 99.7 0.1 2.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|219851572|ref|YP_002466004.1| - 1.7e-25 89.0 0.0 3.1e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|219851572|ref|YP_002466004.1| - 2.2e-21 76.2 0.1 1.3e-20 73.8 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|219851572|ref|YP_002466004.1| - 1.2e-07 32.0 0.1 3.9e-06 27.1 0.0 2.7 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|219851572|ref|YP_002466004.1| - 2.2e-06 27.1 0.1 0.0031 16.9 0.0 2.7 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|219851572|ref|YP_002466004.1| - 5.8e-05 23.6 0.1 0.00072 20.1 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|219851572|ref|YP_002466004.1| - 0.00018 21.8 0.4 0.13 12.6 0.0 3.4 3 1 0 3 3 3 1 TrkA-N domain Shikimate_DH PF01488.20 gi|219851572|ref|YP_002466004.1| - 0.009 16.1 0.1 0.2 11.7 0.0 2.8 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|219851572|ref|YP_002466004.1| - 0.014 15.4 0.0 4.1 7.4 0.0 3.2 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|219851572|ref|YP_002466004.1| - 0.046 12.7 0.3 0.62 9.0 0.0 2.2 2 0 0 2 2 2 0 Prephenate dehydrogenase Amino_oxidase PF01593.24 gi|219851572|ref|YP_002466004.1| - 0.07 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|219851572|ref|YP_002466004.1| - 0.073 13.5 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.12 gi|219851572|ref|YP_002466004.1| - 0.082 12.5 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Nup35_RRM PF05172.13 gi|219851572|ref|YP_002466004.1| - 0.11 12.5 0.0 0.42 10.6 0.0 1.9 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif Transglut_core PF01841.19 gi|219851573|ref|YP_002466005.1| - 8.6e-06 26.2 0.0 1.5e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily 2OG-Fe_Oxy_2 PF10014.9 gi|219851573|ref|YP_002466005.1| - 0.021 14.6 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase DZR PF12773.7 gi|219851573|ref|YP_002466005.1| - 0.036 14.1 0.5 0.07 13.2 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon RskA PF10099.9 gi|219851573|ref|YP_002466005.1| - 0.052 13.8 1.1 0.1 12.9 1.1 1.6 1 1 0 1 1 1 0 Anti-sigma-K factor rskA zf-ribbon_3 PF13248.6 gi|219851573|ref|YP_002466005.1| - 0.15 11.5 3.2 0.59 9.6 3.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain OppC_N PF12911.7 gi|219851573|ref|YP_002466005.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DNA_RNApol_7kD PF03604.13 gi|219851573|ref|YP_002466005.1| - 0.19 11.4 1.2 0.53 10.0 1.2 1.8 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|219851573|ref|YP_002466005.1| - 0.65 10.2 2.1 1.8 8.8 1.9 1.8 2 0 0 2 2 2 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.6 gi|219851573|ref|YP_002466005.1| - 5 7.0 5.7 29 4.5 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PAS_9 PF13426.7 gi|219851575|ref|YP_002466007.1| - 4e-24 84.9 0.0 2.2e-08 34.3 0.0 4.0 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|219851575|ref|YP_002466007.1| - 5.4e-20 71.6 0.0 1.1e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|219851575|ref|YP_002466007.1| - 9.5e-18 63.8 0.5 1.3e-05 25.1 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|219851575|ref|YP_002466007.1| - 1.3e-16 60.6 0.1 2.9e-05 24.0 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.10 gi|219851575|ref|YP_002466007.1| - 2.8e-15 56.5 0.0 2.8e-05 24.3 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|219851575|ref|YP_002466007.1| - 4.1e-13 49.8 0.0 8.6e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219851575|ref|YP_002466007.1| - 1.8e-12 47.4 0.0 3.4e-07 30.4 0.0 3.9 4 0 0 4 4 3 2 PAS fold SPOB_a PF14689.6 gi|219851575|ref|YP_002466007.1| - 6.7e-06 25.7 0.0 1.4e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|219851575|ref|YP_002466007.1| - 1.4e-05 25.1 0.0 2.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|219851575|ref|YP_002466007.1| - 0.00075 19.4 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|219851575|ref|YP_002466007.1| - 0.019 15.0 0.1 0.075 13.1 0.1 2.0 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|219851575|ref|YP_002466007.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|219851575|ref|YP_002466007.1| - 0.17 11.5 0.1 0.3 10.6 0.1 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase MEKHLA PF08670.11 gi|219851575|ref|YP_002466007.1| - 0.18 11.7 0.0 0.51 10.2 0.0 1.8 1 0 0 1 1 1 0 MEKHLA domain DUF484 PF04340.12 gi|219851576|ref|YP_002466008.1| - 0.042 13.5 0.6 0.054 13.2 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF484 FlaC_arch PF05377.11 gi|219851576|ref|YP_002466008.1| - 0.12 12.8 1.0 0.18 12.2 1.0 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) MutL_C PF08676.11 gi|219851577|ref|YP_002466009.1| - 4.5e-34 117.3 0.0 8.9e-34 116.4 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|219851577|ref|YP_002466009.1| - 5.4e-33 113.2 0.0 1.2e-32 112.0 0.0 1.6 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|219851577|ref|YP_002466009.1| - 1.1e-12 47.9 0.2 2e-12 47.1 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|219851577|ref|YP_002466009.1| - 5e-06 27.0 0.1 1.1e-05 25.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|219851578|ref|YP_002466010.1| - 2.3e-78 262.6 0.5 4e-78 261.8 0.5 1.4 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|219851578|ref|YP_002466010.1| - 2.4e-42 143.7 0.0 7.1e-42 142.2 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.18 gi|219851578|ref|YP_002466010.1| - 6.1e-39 134.2 0.3 1.1e-38 133.4 0.3 1.5 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|219851578|ref|YP_002466010.1| - 3.3e-27 94.7 0.2 6.3e-27 93.8 0.2 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|219851578|ref|YP_002466010.1| - 1.6e-23 83.5 0.0 3.8e-23 82.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain II HEAT_2 PF13646.6 gi|219851578|ref|YP_002466010.1| - 0.00065 20.0 1.5 0.013 15.9 0.1 2.9 3 0 0 3 3 3 1 HEAT repeats AAA_27 PF13514.6 gi|219851578|ref|YP_002466010.1| - 0.029 13.9 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|219851578|ref|YP_002466010.1| - 0.11 13.1 0.0 1.3 9.5 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_14 PF13173.6 gi|219851578|ref|YP_002466010.1| - 0.13 12.3 0.0 0.55 10.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|219851578|ref|YP_002466010.1| - 0.14 11.9 0.1 0.55 10.0 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain Lactamase_B PF00753.27 gi|219851579|ref|YP_002466011.1| - 1.2e-10 41.8 0.4 3.3e-10 40.3 0.1 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily ACT PF01842.25 gi|219851579|ref|YP_002466011.1| - 1.2e-07 31.3 1.0 2e-06 27.5 0.0 3.2 3 0 0 3 3 3 1 ACT domain Lactamase_B_2 PF12706.7 gi|219851579|ref|YP_002466011.1| - 3.3e-05 23.5 0.0 5.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Thr_dehydrat_C PF00585.18 gi|219851579|ref|YP_002466011.1| - 0.018 14.8 0.0 5 7.0 0.0 2.5 2 0 0 2 2 2 0 C-terminal regulatory domain of Threonine dehydratase AAA PF00004.29 gi|219851580|ref|YP_002466012.1| - 4.7e-45 153.3 0.0 1e-44 152.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|219851580|ref|YP_002466012.1| - 2.6e-12 46.3 0.2 6.9e-12 45.0 0.2 1.8 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|219851580|ref|YP_002466012.1| - 9.6e-11 41.5 0.0 2.6e-10 40.1 0.0 1.8 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain AAA_16 PF13191.6 gi|219851580|ref|YP_002466012.1| - 6.5e-08 33.1 0.5 3e-05 24.5 0.1 2.7 2 1 0 3 3 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|219851580|ref|YP_002466012.1| - 3e-07 30.5 0.5 1.4e-06 28.3 0.1 2.3 2 2 1 3 3 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|219851580|ref|YP_002466012.1| - 2.7e-06 27.7 1.2 0.0011 19.2 0.0 3.0 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|219851580|ref|YP_002466012.1| - 7e-06 25.9 0.0 1.9e-05 24.5 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|219851580|ref|YP_002466012.1| - 8.7e-06 26.0 0.0 1.8e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|219851580|ref|YP_002466012.1| - 0.00038 20.1 0.0 0.00077 19.1 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain DUF815 PF05673.13 gi|219851580|ref|YP_002466012.1| - 0.00039 19.6 0.0 0.00071 18.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|219851580|ref|YP_002466012.1| - 0.00086 19.3 0.0 0.0024 17.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|219851580|ref|YP_002466012.1| - 0.00093 18.5 0.0 0.0017 17.6 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|219851580|ref|YP_002466012.1| - 0.0014 18.8 1.3 0.0016 18.6 0.0 2.0 2 1 0 2 2 1 1 AAA domain ATPase PF06745.13 gi|219851580|ref|YP_002466012.1| - 0.0017 17.7 2.1 0.26 10.6 0.0 3.2 2 1 1 3 3 3 1 KaiC IstB_IS21 PF01695.17 gi|219851580|ref|YP_002466012.1| - 0.0018 18.0 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.6 gi|219851580|ref|YP_002466012.1| - 0.0036 17.1 0.2 0.024 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|219851580|ref|YP_002466012.1| - 0.0063 16.8 0.6 0.011 15.9 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_3 PF07726.11 gi|219851580|ref|YP_002466012.1| - 0.007 16.2 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|219851580|ref|YP_002466012.1| - 0.0099 15.6 0.1 0.088 12.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|219851580|ref|YP_002466012.1| - 0.01 15.6 0.1 0.022 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|219851580|ref|YP_002466012.1| - 0.014 15.3 2.0 0.65 9.9 0.0 3.1 3 1 0 3 3 3 0 NTPase RNA_helicase PF00910.22 gi|219851580|ref|YP_002466012.1| - 0.016 15.6 0.0 0.06 13.7 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Mg_chelatase PF01078.21 gi|219851580|ref|YP_002466012.1| - 0.024 14.0 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Lebercilin PF15619.6 gi|219851580|ref|YP_002466012.1| - 0.025 14.3 1.7 0.025 14.3 1.7 1.6 2 0 0 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease NACHT PF05729.12 gi|219851580|ref|YP_002466012.1| - 0.025 14.5 0.0 0.22 11.4 0.0 2.2 1 1 1 2 2 2 0 NACHT domain Troponin PF00992.20 gi|219851580|ref|YP_002466012.1| - 0.028 14.7 6.1 0.047 14.0 4.2 2.0 2 0 0 2 2 2 0 Troponin AAA_18 PF13238.6 gi|219851580|ref|YP_002466012.1| - 0.031 14.8 0.0 0.073 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|219851580|ref|YP_002466012.1| - 0.035 14.1 0.0 0.078 13.0 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 gi|219851580|ref|YP_002466012.1| - 0.056 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|219851580|ref|YP_002466012.1| - 0.065 12.7 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|219851580|ref|YP_002466012.1| - 0.079 12.5 1.4 1.1 8.8 0.1 2.8 2 1 1 3 3 3 0 AAA domain PhoH PF02562.16 gi|219851580|ref|YP_002466012.1| - 0.08 12.4 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Nsp1_C PF05064.13 gi|219851580|ref|YP_002466012.1| - 0.11 12.4 2.5 0.12 12.2 0.9 1.8 2 0 0 2 2 2 0 Nsp1-like C-terminal region Torsin PF06309.11 gi|219851580|ref|YP_002466012.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Torsin AFG1_ATPase PF03969.16 gi|219851580|ref|YP_002466012.1| - 0.14 11.0 0.0 0.28 10.0 0.0 1.6 2 0 0 2 2 1 0 AFG1-like ATPase Zeta_toxin PF06414.12 gi|219851580|ref|YP_002466012.1| - 0.15 11.3 0.7 0.27 10.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.22 gi|219851580|ref|YP_002466012.1| - 0.15 11.2 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ApoO PF09769.9 gi|219851580|ref|YP_002466012.1| - 0.16 12.0 0.2 2.9 7.9 0.1 2.2 2 0 0 2 2 2 0 Apolipoprotein O APG6_N PF17675.1 gi|219851580|ref|YP_002466012.1| - 0.16 12.5 3.2 0.45 11.0 3.2 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF2075 PF09848.9 gi|219851580|ref|YP_002466012.1| - 0.17 11.1 0.0 0.33 10.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Filament PF00038.21 gi|219851580|ref|YP_002466012.1| - 0.2 11.2 5.8 0.061 12.9 2.6 1.7 3 0 0 3 3 1 0 Intermediate filament protein GAS PF13851.6 gi|219851580|ref|YP_002466012.1| - 0.22 10.9 3.2 0.44 9.9 3.2 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Tektin PF03148.14 gi|219851580|ref|YP_002466012.1| - 0.23 10.2 2.6 0.48 9.1 2.6 1.4 1 0 0 1 1 1 0 Tektin family DUF919 PF06034.11 gi|219851580|ref|YP_002466012.1| - 0.29 11.0 4.6 1 9.2 2.2 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF3450 PF11932.8 gi|219851580|ref|YP_002466012.1| - 0.35 10.1 2.1 0.67 9.2 2.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) zf-C4H2 PF10146.9 gi|219851580|ref|YP_002466012.1| - 0.56 10.5 1.7 4.6 7.5 1.1 2.3 2 1 0 2 2 2 0 Zinc finger-containing protein HTH_19 PF12844.7 gi|219851581|ref|YP_002466013.1| - 1.9e-06 27.8 0.5 2.8e-06 27.2 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|219851581|ref|YP_002466013.1| - 4.8e-06 26.5 0.9 7.2e-06 26.0 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|219851581|ref|YP_002466013.1| - 0.00044 20.5 0.0 0.00071 19.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|219851581|ref|YP_002466013.1| - 0.0036 17.1 0.3 0.0059 16.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF5122 PF17164.4 gi|219851582|ref|YP_002466014.1| - 0.003 17.8 3.4 0.36 11.2 0.0 5.2 6 0 0 6 6 6 1 Domain of unknown function (DUF5122) beta-propeller Ferritin PF00210.24 gi|219851583|ref|YP_002466015.1| - 4.8e-41 140.0 5.1 5.6e-41 139.8 5.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DsbC PF11412.8 gi|219851583|ref|YP_002466015.1| - 0.053 13.6 0.1 0.074 13.1 0.1 1.3 1 0 0 1 1 1 0 Disulphide bond corrector protein DsbC eIF-6 PF01912.18 gi|219851583|ref|YP_002466015.1| - 0.15 11.4 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 eIF-6 family Glycos_transf_1 PF00534.20 gi|219851584|ref|YP_002466016.1| - 4.6e-23 81.6 0.0 7e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219851584|ref|YP_002466016.1| - 1.3e-20 74.2 0.0 2.4e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219851584|ref|YP_002466016.1| - 2.3e-13 50.5 0.1 5.7e-13 49.2 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|219851584|ref|YP_002466016.1| - 7.7e-09 35.8 0.0 1.7e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Amino_oxidase PF01593.24 gi|219851585|ref|YP_002466017.1| - 2e-28 99.9 0.0 1e-27 97.5 0.0 1.8 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|219851585|ref|YP_002466017.1| - 1.5e-13 50.7 0.2 3.8e-13 49.4 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|219851585|ref|YP_002466017.1| - 8.4e-06 25.6 2.6 6.8e-05 22.6 2.6 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|219851585|ref|YP_002466017.1| - 0.00023 20.5 0.9 0.00035 19.9 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|219851585|ref|YP_002466017.1| - 0.00055 20.4 0.4 0.0027 18.2 0.4 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|219851585|ref|YP_002466017.1| - 0.00096 18.3 0.1 0.0014 17.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|219851585|ref|YP_002466017.1| - 0.0014 17.9 0.3 0.0029 16.9 0.2 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|219851585|ref|YP_002466017.1| - 0.0023 17.4 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|219851585|ref|YP_002466017.1| - 0.04 14.2 0.1 0.085 13.1 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.17 gi|219851585|ref|YP_002466017.1| - 0.047 14.3 0.2 0.64 10.6 0.1 2.6 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent HI0933_like PF03486.14 gi|219851585|ref|YP_002466017.1| - 0.051 12.3 0.1 0.21 10.2 0.3 1.7 2 0 0 2 2 2 0 HI0933-like protein HicA_toxin PF07927.12 gi|219851585|ref|YP_002466017.1| - 0.055 13.5 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Pyr_redox_3 PF13738.6 gi|219851585|ref|YP_002466017.1| - 0.13 11.5 0.1 4.8 6.4 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|219851585|ref|YP_002466017.1| - 0.17 11.8 0.1 0.41 10.6 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TPR_2 PF07719.17 gi|219851586|ref|YP_002466018.1| - 1.5e-30 102.8 10.2 4e-08 32.8 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219851586|ref|YP_002466018.1| - 7.6e-29 98.3 4.1 3.4e-08 32.9 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219851586|ref|YP_002466018.1| - 1.3e-21 74.9 1.3 0.0015 18.6 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219851586|ref|YP_002466018.1| - 3.5e-21 74.6 3.0 3e-07 30.0 0.0 4.8 3 2 2 5 5 5 4 TPR repeat TPR_17 PF13431.6 gi|219851586|ref|YP_002466018.1| - 6e-14 51.3 0.1 0.0057 16.9 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219851586|ref|YP_002466018.1| - 2.7e-13 50.3 10.5 2.5e-07 31.3 2.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219851586|ref|YP_002466018.1| - 1.1e-12 48.0 10.8 8.9e-06 25.9 0.7 4.2 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219851586|ref|YP_002466018.1| - 1.4e-09 38.3 5.6 0.00037 20.9 0.3 2.5 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219851586|ref|YP_002466018.1| - 1.8e-09 37.6 14.5 0.03 15.1 0.1 5.0 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|219851586|ref|YP_002466018.1| - 9.8e-09 35.3 3.3 0.086 13.5 0.1 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219851586|ref|YP_002466018.1| - 4.8e-08 33.0 11.5 0.00041 20.5 0.9 3.9 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|219851586|ref|YP_002466018.1| - 4.3e-06 26.8 11.1 0.076 13.7 0.2 4.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219851586|ref|YP_002466018.1| - 4.7e-05 23.1 6.0 5.7 7.2 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|219851586|ref|YP_002466018.1| - 0.0001 22.0 15.0 0.068 13.1 0.3 4.2 5 0 0 5 5 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219851586|ref|YP_002466018.1| - 0.00012 22.2 0.0 0.0082 16.4 0.0 2.3 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|219851586|ref|YP_002466018.1| - 0.00025 21.1 0.6 6.8 6.8 0.0 3.6 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|219851586|ref|YP_002466018.1| - 0.0056 16.4 0.4 1.8 8.3 0.0 3.0 1 1 2 3 3 3 1 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|219851586|ref|YP_002466018.1| - 0.0061 15.5 0.0 0.24 10.3 0.0 2.0 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|219851586|ref|YP_002466018.1| - 0.008 15.4 0.5 0.037 13.2 0.2 1.8 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|219851586|ref|YP_002466018.1| - 0.023 14.1 1.7 1.5 8.1 0.2 2.8 1 1 1 2 2 2 0 MalT-like TPR region Sel1 PF08238.12 gi|219851586|ref|YP_002466018.1| - 0.039 14.6 0.4 0.039 14.6 0.4 3.2 4 0 0 4 4 3 0 Sel1 repeat C1_1 PF00130.22 gi|219851587|ref|YP_002466019.1| - 0.0035 17.2 6.3 0.13 12.2 0.4 2.4 2 0 0 2 2 2 2 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|219851587|ref|YP_002466019.1| - 3.1 7.9 7.4 3.1 7.9 1.3 2.4 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|219851587|ref|YP_002466019.1| - 4.1 7.6 15.8 6.6 6.9 8.4 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|219851587|ref|YP_002466019.1| - 8.2 6.5 10.9 3.4 7.7 0.8 2.9 2 2 1 3 3 3 0 Double zinc ribbon tRNA-synt_2b PF00587.25 gi|219851588|ref|YP_002466020.1| - 2e-28 99.6 0.0 2.8e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|219851588|ref|YP_002466020.1| - 7.5e-18 64.5 0.2 1.7e-17 63.3 0.1 1.7 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|219851588|ref|YP_002466020.1| - 2.4e-13 50.1 0.2 7.8e-13 48.4 0.1 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|219851588|ref|YP_002466020.1| - 0.013 16.1 0.0 0.047 14.3 0.0 1.9 1 0 0 1 1 1 0 TIR domain SpoIIM PF01944.17 gi|219851589|ref|YP_002466021.1| - 1.3e-32 113.0 13.6 1.6e-32 112.7 13.6 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF63 PF01889.17 gi|219851590|ref|YP_002466022.1| - 4.3e-103 345.2 21.0 4.8e-103 345.1 21.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DcuA_DcuB PF03605.14 gi|219851590|ref|YP_002466022.1| - 0.0075 15.2 1.3 0.0077 15.2 0.1 1.7 2 0 0 2 2 2 1 Anaerobic c4-dicarboxylate membrane transporter DUF3687 PF12459.8 gi|219851590|ref|YP_002466022.1| - 8.1 6.0 12.1 0.36 10.4 2.7 3.0 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein Fe-ADH_2 PF13685.6 gi|219851591|ref|YP_002466023.1| - 1.1e-68 231.7 0.4 1.3e-68 231.4 0.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|219851591|ref|YP_002466023.1| - 6.3e-24 84.5 2.3 1.5e-22 79.9 1.8 2.0 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|219851591|ref|YP_002466023.1| - 3.9e-09 36.1 0.4 2.2e-08 33.6 0.4 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase UPF0179 PF03684.13 gi|219851592|ref|YP_002466024.1| - 1.7e-45 154.3 0.4 2e-45 154.1 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) ADP_ribosyl_GH PF03747.14 gi|219851593|ref|YP_002466025.1| - 4.6e-52 177.5 3.5 1.2e-51 176.2 3.5 1.6 1 1 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_OmpA PF13436.6 gi|219851593|ref|YP_002466025.1| - 0.012 15.4 8.2 0.18 11.6 0.7 2.4 2 0 0 2 2 2 0 Glycine-zipper domain C_GCAxxG_C_C PF09719.10 gi|219851593|ref|YP_002466025.1| - 0.026 14.8 2.0 0.055 13.8 0.2 2.1 2 0 0 2 2 2 0 Putative redox-active protein (C_GCAxxG_C_C) Gly-zipper_YMGG PF13441.6 gi|219851593|ref|YP_002466025.1| - 0.18 11.5 12.8 0.26 11.1 1.0 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper EF-hand_13 PF17958.1 gi|219851593|ref|YP_002466025.1| - 0.23 11.3 0.0 0.41 10.5 0.0 1.3 1 0 0 1 1 1 0 EF-hand domain Gly-zipper_Omp PF13488.6 gi|219851593|ref|YP_002466025.1| - 0.54 10.3 10.7 2 8.4 1.2 2.4 2 0 0 2 2 2 0 Glycine zipper Rick_17kDa_Anti PF05433.15 gi|219851593|ref|YP_002466025.1| - 0.7 9.8 11.7 3.5 7.6 2.3 2.5 2 0 0 2 2 2 0 Glycine zipper 2TM domain UPF0058 PF01893.16 gi|219851594|ref|YP_002466026.1| - 4.4e-14 52.5 1.1 4.9e-14 52.4 1.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Radical_SAM_C PF16199.5 gi|219851595|ref|YP_002466027.1| - 1.7e-22 79.2 0.0 4.1e-22 78.0 0.0 1.7 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|219851595|ref|YP_002466027.1| - 1.2e-20 74.5 0.0 2.4e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|219851595|ref|YP_002466027.1| - 0.00054 20.2 0.0 0.0015 18.7 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|219851595|ref|YP_002466027.1| - 0.021 14.8 0.0 0.075 13.0 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_primase_S PF01896.19 gi|219851596|ref|YP_002466028.1| - 8.6e-19 68.3 0.0 2.3e-18 66.8 0.0 1.7 1 1 0 1 1 1 1 DNA primase small subunit Sld5 PF05916.11 gi|219851597|ref|YP_002466029.1| - 0.0031 18.0 0.6 0.0065 16.9 0.4 1.6 1 1 0 1 1 1 1 GINS complex protein DUF2151 PF10221.9 gi|219851597|ref|YP_002466029.1| - 0.04 12.5 0.1 0.051 12.2 0.1 1.1 1 0 0 1 1 1 0 Cell cycle and development regulator DUF883 PF05957.13 gi|219851597|ref|YP_002466029.1| - 0.31 11.7 3.7 5.6 7.6 0.0 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Ribosomal_L44 PF00935.19 gi|219851598|ref|YP_002466030.1| - 6.8e-25 87.4 5.7 8.5e-25 87.0 5.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 UPF0167 PF03691.14 gi|219851598|ref|YP_002466030.1| - 0.032 14.0 0.1 0.04 13.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) DUF3511 PF12023.8 gi|219851598|ref|YP_002466030.1| - 0.041 13.7 0.3 0.85 9.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3511) zf-ribbon_3 PF13248.6 gi|219851598|ref|YP_002466030.1| - 0.051 13.0 0.7 2.2 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|219851598|ref|YP_002466030.1| - 0.096 12.9 3.2 1.2 9.4 0.3 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_L33 PF00471.20 gi|219851598|ref|YP_002466030.1| - 0.18 12.3 2.0 0.18 12.3 2.0 1.9 2 0 0 2 2 2 0 Ribosomal protein L33 Ribosomal_S27e PF01667.17 gi|219851599|ref|YP_002466031.1| - 1.7e-24 85.3 0.1 1.8e-24 85.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|219851599|ref|YP_002466031.1| - 0.00056 19.4 1.8 0.00075 19.0 1.8 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding TackOD1 PF18551.1 gi|219851599|ref|YP_002466031.1| - 0.014 15.1 0.3 0.016 14.9 0.3 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn_Tnp_IS91 PF14319.6 gi|219851599|ref|YP_002466031.1| - 0.048 13.7 0.2 0.051 13.6 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain TFIIS_C PF01096.18 gi|219851599|ref|YP_002466031.1| - 0.051 13.4 2.2 3.8 7.5 2.2 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|219851599|ref|YP_002466031.1| - 0.058 12.8 1.0 3.6 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|219851599|ref|YP_002466031.1| - 0.059 13.5 0.8 0.097 12.8 0.8 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|219851599|ref|YP_002466031.1| - 0.094 12.7 0.9 0.14 12.2 0.9 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|219851599|ref|YP_002466031.1| - 0.12 12.3 1.3 0.15 12.0 1.3 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Terminase_GpA PF05876.12 gi|219851599|ref|YP_002466031.1| - 0.12 10.9 0.1 0.12 10.9 0.1 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DUF3797 PF12677.7 gi|219851599|ref|YP_002466031.1| - 0.24 11.3 2.9 0.17 11.8 1.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) EIF_2_alpha PF07541.12 gi|219851600|ref|YP_002466032.1| - 3e-21 75.7 0.0 4.7e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|219851600|ref|YP_002466032.1| - 3.1e-11 43.5 0.1 6.6e-11 42.4 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain ProRS-C_2 PF09181.10 gi|219851600|ref|YP_002466032.1| - 0.013 15.6 0.2 0.028 14.6 0.2 1.6 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal DUF1357 PF07094.11 gi|219851600|ref|YP_002466032.1| - 0.09 12.8 0.1 0.24 11.4 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1357) Nop10p PF04135.12 gi|219851601|ref|YP_002466033.1| - 2.1e-21 75.7 2.4 2.2e-21 75.6 2.4 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PAC2 PF09754.9 gi|219851602|ref|YP_002466034.1| - 5.2e-46 157.3 0.0 6e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PHP_C PF13263.6 gi|219851603|ref|YP_002466035.1| - 6.1e-05 22.7 0.0 0.00018 21.2 0.0 1.9 2 0 0 2 2 2 1 PHP-associated Fer4 PF00037.27 gi|219851604|ref|YP_002466036.1| - 2.2e-13 49.4 14.5 5.6e-08 32.3 2.4 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851604|ref|YP_002466036.1| - 4.5e-11 43.2 35.5 5.1e-06 27.0 14.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219851604|ref|YP_002466036.1| - 4.9e-10 39.4 23.2 1.1e-07 31.8 12.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851604|ref|YP_002466036.1| - 5.8e-10 40.0 7.8 5.9e-05 23.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|219851604|ref|YP_002466036.1| - 3e-09 36.4 12.6 0.00016 21.5 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219851604|ref|YP_002466036.1| - 1.5e-08 34.7 20.4 7e-07 29.3 10.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219851604|ref|YP_002466036.1| - 2e-08 33.9 12.4 8.5e-05 22.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219851604|ref|YP_002466036.1| - 2e-07 31.0 9.9 3.4e-07 30.3 9.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851604|ref|YP_002466036.1| - 3e-05 24.6 19.2 0.0098 16.8 6.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219851604|ref|YP_002466036.1| - 5.8e-05 23.3 13.6 0.0071 16.8 2.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219851604|ref|YP_002466036.1| - 0.00073 20.0 11.3 0.054 14.0 2.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Furin-like_2 PF15913.5 gi|219851604|ref|YP_002466036.1| - 0.00089 19.4 2.6 0.25 11.5 0.1 2.0 1 1 1 2 2 2 2 Furin-like repeat, cysteine-rich Fer4_8 PF13183.6 gi|219851604|ref|YP_002466036.1| - 0.0019 18.6 13.3 0.23 11.9 2.8 2.1 1 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219851604|ref|YP_002466036.1| - 0.0021 18.6 12.3 0.21 12.2 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|219851604|ref|YP_002466036.1| - 0.014 15.6 11.0 0.028 14.6 11.0 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219851604|ref|YP_002466036.1| - 0.054 14.2 11.8 0.17 12.7 1.8 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_19 PF06902.11 gi|219851604|ref|YP_002466036.1| - 0.06 13.4 6.5 1.6 8.8 0.3 2.7 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_22 PF17179.4 gi|219851604|ref|YP_002466036.1| - 0.39 11.6 9.2 3.5 8.5 0.8 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|219851605|ref|YP_002466037.1| - 3.5e-15 56.1 5.2 1.6e-10 40.8 1.7 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|219851605|ref|YP_002466037.1| - 5.4e-09 35.6 3.0 5.7e-07 29.0 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|219851605|ref|YP_002466037.1| - 1.1e-08 34.8 5.9 3.5e-08 33.2 4.9 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|219851605|ref|YP_002466037.1| - 5e-07 28.8 0.8 1e-06 27.8 0.8 1.5 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|219851605|ref|YP_002466037.1| - 3.4e-06 26.5 1.0 6.9e-06 25.5 0.9 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|219851605|ref|YP_002466037.1| - 4.4e-06 26.8 0.2 1.8e-05 24.8 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|219851605|ref|YP_002466037.1| - 3.3e-05 23.7 4.2 0.011 15.4 0.4 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|219851605|ref|YP_002466037.1| - 0.00027 20.3 0.3 0.00069 18.9 0.1 1.7 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|219851605|ref|YP_002466037.1| - 0.00048 19.3 1.0 0.031 13.3 1.2 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|219851605|ref|YP_002466037.1| - 0.0006 18.8 1.4 0.76 8.5 0.3 2.8 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|219851605|ref|YP_002466037.1| - 0.003 16.9 0.4 0.02 14.2 0.6 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|219851605|ref|YP_002466037.1| - 0.0059 15.7 1.9 0.0059 15.7 1.9 1.9 2 1 0 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|219851605|ref|YP_002466037.1| - 0.041 13.2 0.1 0.1 11.9 0.1 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|219851605|ref|YP_002466037.1| - 0.05 14.2 0.2 0.14 12.7 0.2 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|219851605|ref|YP_002466037.1| - 0.055 12.5 0.1 0.21 10.6 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase RNase_HII PF01351.18 gi|219851606|ref|YP_002466038.1| - 1.3e-44 152.5 0.1 1.4e-44 152.3 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Peptidase_M50 PF02163.22 gi|219851607|ref|YP_002466039.1| - 1.4e-23 83.5 0.1 4.3e-23 81.9 0.1 1.7 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|219851607|ref|YP_002466039.1| - 2.4e-09 37.4 0.0 3.9e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|219851607|ref|YP_002466039.1| - 3.1e-06 26.9 0.0 5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 PDZ domain SHOCT PF09851.9 gi|219851608|ref|YP_002466040.1| - 0.00044 19.9 0.1 0.00085 19.0 0.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF4271 PF14093.6 gi|219851608|ref|YP_002466040.1| - 0.0097 15.8 0.3 0.011 15.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) Herpes_US9 PF06072.11 gi|219851608|ref|YP_002466040.1| - 0.059 13.2 0.1 0.13 12.1 0.0 1.7 1 1 1 2 2 2 0 Alphaherpesvirus tegument protein US9 DUF2207 PF09972.9 gi|219851608|ref|YP_002466040.1| - 0.076 11.8 0.2 0.082 11.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) VbhA PF18495.1 gi|219851608|ref|YP_002466040.1| - 0.091 12.6 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 Antitoxin VbhA DUF1707 PF08044.11 gi|219851608|ref|YP_002466040.1| - 0.14 12.3 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF4191 PF13829.6 gi|219851608|ref|YP_002466040.1| - 0.14 11.5 0.2 0.17 11.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4229 PF14012.6 gi|219851608|ref|YP_002466040.1| - 0.7 10.0 4.9 1 9.5 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) MCPsignal PF00015.21 gi|219851609|ref|YP_002466041.1| - 1.5e-46 158.3 44.8 1.7e-43 148.4 22.7 4.3 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219851609|ref|YP_002466041.1| - 3.9e-14 52.8 0.0 2.5e-05 24.5 0.0 3.8 3 1 0 3 3 3 2 PAS fold PAS PF00989.25 gi|219851609|ref|YP_002466041.1| - 7.9e-11 42.0 0.0 5.3e-06 26.4 0.0 3.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219851609|ref|YP_002466041.1| - 2.5e-08 34.1 1.7 0.0001 22.5 0.1 3.9 3 3 0 3 3 3 2 PAS domain DUF948 PF06103.11 gi|219851609|ref|YP_002466041.1| - 1.3e-06 28.6 32.3 0.038 14.3 4.7 5.7 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) PAS_8 PF13188.7 gi|219851609|ref|YP_002466041.1| - 1.2e-05 25.2 0.0 0.012 15.6 0.0 2.6 2 0 0 2 2 2 1 PAS domain DUF1664 PF07889.12 gi|219851609|ref|YP_002466041.1| - 0.00027 21.0 28.6 0.061 13.4 1.6 5.0 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|219851609|ref|YP_002466041.1| - 0.0027 16.7 1.0 0.0027 16.7 1.0 2.4 2 0 0 2 2 2 1 Intra-flagellar transport protein 57 PAS_7 PF12860.7 gi|219851609|ref|YP_002466041.1| - 0.0028 17.8 1.6 1.7 8.8 0.0 4.6 4 2 1 5 5 5 1 PAS fold Laminin_II PF06009.12 gi|219851609|ref|YP_002466041.1| - 0.025 14.6 34.3 0.58 10.2 5.9 4.6 2 2 2 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|219851609|ref|YP_002466041.1| - 0.028 14.7 1.5 0.028 14.7 1.5 4.7 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.11 gi|219851609|ref|YP_002466041.1| - 0.043 12.7 17.6 0.3 9.9 5.3 2.5 2 0 0 2 2 2 0 Spc7 kinetochore protein HOOK PF05622.12 gi|219851609|ref|YP_002466041.1| - 0.14 10.3 14.0 0.09 10.9 4.3 2.2 2 0 0 2 2 2 0 HOOK protein CENP-F_leu_zip PF10473.9 gi|219851609|ref|YP_002466041.1| - 0.25 11.4 17.9 0.6 10.1 0.5 3.7 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 YscO PF07321.12 gi|219851609|ref|YP_002466041.1| - 0.25 11.3 8.4 0.098 12.6 1.5 3.0 2 1 1 3 3 3 0 Type III secretion protein YscO GAS PF13851.6 gi|219851609|ref|YP_002466041.1| - 0.4 10.0 10.5 0.39 10.0 1.9 2.5 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Bep_C_terminal PF17841.1 gi|219851609|ref|YP_002466041.1| - 0.49 10.7 7.7 6.9 7.0 0.3 4.2 3 2 2 5 5 4 0 BID domain of Bartonella effector protein (Bep) Sec8_exocyst PF04048.14 gi|219851609|ref|YP_002466041.1| - 0.5 10.3 12.6 0.4 10.6 0.3 3.6 3 0 0 3 3 3 0 Sec8 exocyst complex component specific domain Fib_alpha PF08702.10 gi|219851609|ref|YP_002466041.1| - 0.52 10.5 21.8 7.9 6.7 0.4 4.5 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family BAR_3 PF16746.5 gi|219851609|ref|YP_002466041.1| - 0.57 9.8 10.2 0.49 10.1 1.3 3.0 1 1 1 3 3 3 0 BAR domain of APPL family BLOC1_2 PF10046.9 gi|219851609|ref|YP_002466041.1| - 0.68 10.3 23.1 0.99 9.7 1.0 5.1 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PilJ PF13675.6 gi|219851609|ref|YP_002466041.1| - 0.74 9.8 11.3 0.75 9.8 1.7 3.9 2 2 2 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term Syntaxin_2 PF14523.6 gi|219851609|ref|YP_002466041.1| - 0.81 10.1 12.7 19 5.7 0.3 4.3 1 1 2 3 3 3 0 Syntaxin-like protein Transcrip_act PF04949.13 gi|219851609|ref|YP_002466041.1| - 0.95 9.3 0.0 0.95 9.3 0.0 3.3 2 1 1 3 3 3 0 Transcriptional activator YkyA PF10368.9 gi|219851609|ref|YP_002466041.1| - 0.96 9.1 21.5 1.1 8.9 3.2 3.8 2 2 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF489 PF04356.12 gi|219851609|ref|YP_002466041.1| - 1.3 8.9 9.9 0.32 11.0 2.8 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF489) DUF2935 PF11155.8 gi|219851609|ref|YP_002466041.1| - 1.5 9.2 5.0 20 5.5 5.0 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) BORCS8 PF10167.9 gi|219851609|ref|YP_002466041.1| - 2 8.4 8.5 0.9 9.5 1.1 3.4 2 2 2 4 4 4 0 BLOC-1-related complex sub-unit 8 Sec34 PF04136.15 gi|219851609|ref|YP_002466041.1| - 3 7.7 11.4 4.4 7.2 0.8 4.0 2 2 2 4 4 4 0 Sec34-like family PHA_synth_III_E PF09712.10 gi|219851609|ref|YP_002466041.1| - 4.7 6.2 10.6 4.4 6.3 0.2 3.7 4 1 0 4 4 4 0 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) AIP3 PF03915.13 gi|219851609|ref|YP_002466041.1| - 4.8 6.2 22.4 1.2 8.2 12.7 2.2 1 1 1 2 2 2 0 Actin interacting protein 3 DASH_Duo1 PF08651.10 gi|219851609|ref|YP_002466041.1| - 5 7.0 14.0 4.6 7.1 0.2 5.1 4 1 1 5 5 5 0 DASH complex subunit Duo1 Serine_rich PF08824.10 gi|219851609|ref|YP_002466041.1| - 5.9 6.9 13.5 19 5.2 0.7 3.7 1 1 2 3 3 3 0 Serine rich protein interaction domain ZapB PF06005.12 gi|219851609|ref|YP_002466041.1| - 8 7.0 12.0 18 5.9 1.2 4.3 4 1 0 4 4 3 0 Cell division protein ZapB CheW PF01584.19 gi|219851610|ref|YP_002466042.1| - 3.8e-27 94.6 1.6 4.5e-27 94.4 1.6 1.1 1 0 0 1 1 1 1 CheW-like domain Emaravirus_P4 PF16505.5 gi|219851610|ref|YP_002466042.1| - 0.02 13.9 0.1 0.023 13.7 0.1 1.2 1 0 0 1 1 1 0 P4 movement protein of Emaravirus, and the 30K superfamily MCPsignal PF00015.21 gi|219851611|ref|YP_002466043.1| - 3.5e-46 157.2 45.9 4.2e-44 150.4 19.6 4.2 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219851611|ref|YP_002466043.1| - 4.2e-13 49.5 0.0 4.7e-06 26.8 0.0 3.1 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|219851611|ref|YP_002466043.1| - 5.5e-10 39.3 0.0 3.6e-05 23.7 0.0 3.2 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219851611|ref|YP_002466043.1| - 2.1e-07 31.1 0.8 0.033 14.4 0.0 3.9 3 2 0 3 3 3 2 PAS domain DUF948 PF06103.11 gi|219851611|ref|YP_002466043.1| - 2.2e-05 24.6 33.4 0.044 14.0 5.4 5.4 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) PAS_8 PF13188.7 gi|219851611|ref|YP_002466043.1| - 2.9e-05 24.0 0.0 0.088 12.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain DUF1664 PF07889.12 gi|219851611|ref|YP_002466043.1| - 0.00011 22.3 26.6 0.022 14.8 1.4 4.3 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) PAS_7 PF12860.7 gi|219851611|ref|YP_002466043.1| - 0.003 17.7 0.1 0.4 10.9 0.0 3.9 4 1 1 5 5 5 1 PAS fold Syntaxin_2 PF14523.6 gi|219851611|ref|YP_002466043.1| - 0.0094 16.3 11.0 0.47 10.8 2.8 3.9 1 1 2 3 3 3 1 Syntaxin-like protein Laminin_II PF06009.12 gi|219851611|ref|YP_002466043.1| - 0.011 15.8 35.7 0.47 10.5 5.6 4.3 2 2 2 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|219851611|ref|YP_002466043.1| - 0.02 15.1 1.7 0.02 15.1 1.7 3.9 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF2383 PF09537.10 gi|219851611|ref|YP_002466043.1| - 0.088 13.2 5.6 1.2 9.6 0.7 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF2383) GAS PF13851.6 gi|219851611|ref|YP_002466043.1| - 0.1 11.9 11.0 0.13 11.6 2.0 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding YscO PF07321.12 gi|219851611|ref|YP_002466043.1| - 0.26 11.2 15.1 0.82 9.6 4.0 3.6 2 1 0 2 2 2 0 Type III secretion protein YscO CENP-F_leu_zip PF10473.9 gi|219851611|ref|YP_002466043.1| - 0.26 11.3 18.8 0.56 10.2 1.0 3.7 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IFT57 PF10498.9 gi|219851611|ref|YP_002466043.1| - 0.39 9.7 15.2 0.16 10.9 3.6 2.4 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|219851611|ref|YP_002466043.1| - 0.65 8.8 21.1 0.98 8.2 6.3 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein Transcrip_act PF04949.13 gi|219851611|ref|YP_002466043.1| - 0.9 9.4 0.0 0.9 9.4 0.0 3.4 2 1 1 3 3 3 0 Transcriptional activator BAR_3 PF16746.5 gi|219851611|ref|YP_002466043.1| - 1.5 8.5 12.0 1 9.0 3.1 3.0 1 1 3 4 4 4 0 BAR domain of APPL family TACC_C PF05010.14 gi|219851611|ref|YP_002466043.1| - 1.6 8.4 11.3 0.7 9.6 1.0 2.8 2 1 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF812 PF05667.11 gi|219851611|ref|YP_002466043.1| - 1.7 7.4 28.8 0.14 11.1 5.8 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF812) DASH_Duo1 PF08651.10 gi|219851611|ref|YP_002466043.1| - 1.8 8.4 15.0 4.9 7.0 0.2 4.9 4 1 1 5 5 5 0 DASH complex subunit Duo1 Fib_alpha PF08702.10 gi|219851611|ref|YP_002466043.1| - 2 8.6 23.1 10 6.3 1.6 4.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family YkyA PF10368.9 gi|219851611|ref|YP_002466043.1| - 2.3 7.9 21.0 1.2 8.8 2.8 3.6 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein DUF489 PF04356.12 gi|219851611|ref|YP_002466043.1| - 2.5 8.0 11.5 0.28 11.2 3.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF489) Pex19 PF04614.12 gi|219851611|ref|YP_002466043.1| - 3.1 7.5 20.3 0.089 12.6 3.1 2.4 1 1 0 2 2 2 0 Pex19 protein family Prefoldin_2 PF01920.20 gi|219851611|ref|YP_002466043.1| - 3.9 7.5 11.9 11 6.0 0.1 4.4 5 0 0 5 5 4 0 Prefoldin subunit BLOC1_2 PF10046.9 gi|219851611|ref|YP_002466043.1| - 4 7.8 23.6 1.8 8.9 1.5 4.8 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2730 PF10805.8 gi|219851611|ref|YP_002466043.1| - 4.8 7.3 10.7 2.8 8.1 0.4 4.2 2 2 2 5 5 5 0 Protein of unknown function (DUF2730) DUF16 PF01519.16 gi|219851611|ref|YP_002466043.1| - 5 7.7 16.1 1.2e+02 3.2 0.3 4.4 1 1 2 3 3 3 0 Protein of unknown function DUF16 DUF2935 PF11155.8 gi|219851611|ref|YP_002466043.1| - 5.6 7.3 6.4 2.2 8.6 0.7 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Serine_rich PF08824.10 gi|219851611|ref|YP_002466043.1| - 5.9 6.9 13.9 4.1 7.4 2.6 3.5 2 1 2 4 4 3 0 Serine rich protein interaction domain DUF4200 PF13863.6 gi|219851611|ref|YP_002466043.1| - 6 7.3 7.5 17 5.8 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) CheZ PF04344.13 gi|219851611|ref|YP_002466043.1| - 6 6.7 24.1 1.8 8.4 8.8 3.5 1 1 3 4 4 4 0 Chemotaxis phosphatase, CheZ TMPIT PF07851.13 gi|219851611|ref|YP_002466043.1| - 8.3 5.5 17.7 2.4 7.3 3.0 3.3 2 2 1 4 4 4 0 TMPIT-like protein SKA1 PF07160.12 gi|219851611|ref|YP_002466043.1| - 8.8 6.1 15.5 7.8 6.3 4.1 2.7 3 0 0 3 3 2 0 Spindle and kinetochore-associated protein 1 AIP3 PF03915.13 gi|219851611|ref|YP_002466043.1| - 9.1 5.3 23.6 3.4 6.7 15.1 2.5 1 1 1 2 2 2 0 Actin interacting protein 3 BORCS8 PF10167.9 gi|219851611|ref|YP_002466043.1| - 9.3 6.2 13.0 0.93 9.5 1.1 4.1 3 2 2 5 5 5 0 BLOC-1-related complex sub-unit 8 CheW PF01584.19 gi|219851612|ref|YP_002466044.1| - 5.7e-28 97.3 0.9 6.8e-28 97.0 0.9 1.1 1 0 0 1 1 1 1 CheW-like domain Band_7 PF01145.25 gi|219851613|ref|YP_002466045.1| - 3.9e-33 114.9 3.4 3.9e-33 114.9 3.4 1.7 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|219851613|ref|YP_002466045.1| - 0.09 12.5 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family Flot PF15975.5 gi|219851613|ref|YP_002466045.1| - 0.54 10.5 6.7 1.8 8.8 0.7 2.5 1 1 1 2 2 2 0 Flotillin NfeD PF01957.18 gi|219851614|ref|YP_002466046.1| - 1.4e-15 57.4 2.6 1.4e-15 57.4 2.6 1.5 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding DUF819 PF05684.12 gi|219851614|ref|YP_002466046.1| - 0.0015 17.6 3.8 0.002 17.2 3.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF819) DUF4131 PF13567.6 gi|219851614|ref|YP_002466046.1| - 1.3 8.6 4.6 0.22 11.2 0.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF3955 PF13127.6 gi|219851614|ref|YP_002466046.1| - 2.6 7.9 12.0 7.3 6.5 4.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3955) 5_nucleotid_C PF02872.18 gi|219851615|ref|YP_002466047.1| - 3.7e-17 63.0 0.0 1e-16 61.6 0.0 1.6 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|219851615|ref|YP_002466047.1| - 2.4e-07 31.5 0.0 4.7e-06 27.2 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Put_DNA-bind_N PF06971.13 gi|219851617|ref|YP_002466049.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus PRK PF00485.18 gi|219851618|ref|YP_002466050.1| - 2.2e-49 167.9 0.0 3.5e-49 167.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|219851618|ref|YP_002466050.1| - 0.00047 20.7 0.0 0.0014 19.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|219851618|ref|YP_002466050.1| - 0.007 16.4 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|219851618|ref|YP_002466050.1| - 0.035 14.5 0.0 0.074 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|219851618|ref|YP_002466050.1| - 0.037 13.8 0.0 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|219851618|ref|YP_002466050.1| - 0.04 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RecX PF02631.16 gi|219851618|ref|YP_002466050.1| - 0.062 13.8 0.6 17 5.9 0.1 3.0 2 1 1 3 3 3 0 RecX family NACHT PF05729.12 gi|219851618|ref|YP_002466050.1| - 0.08 12.9 0.1 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain CoaE PF01121.20 gi|219851618|ref|YP_002466050.1| - 0.14 11.8 0.5 4.9 6.8 0.2 2.3 2 0 0 2 2 2 0 Dephospho-CoA kinase ABC_tran PF00005.27 gi|219851618|ref|YP_002466050.1| - 0.15 12.5 0.0 0.24 11.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|219851618|ref|YP_002466050.1| - 0.79 10.2 6.1 16 5.9 6.1 2.2 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|219851619|ref|YP_002466051.1| - 8.9e-11 42.4 0.0 1.7e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily PurS PF02700.14 gi|219851620|ref|YP_002466052.1| - 7.2e-24 83.8 0.0 7.9e-24 83.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|219851621|ref|YP_002466053.1| - 7e-43 146.6 0.0 8.1e-43 146.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|219851621|ref|YP_002466053.1| - 1.4e-09 38.0 0.0 2.2e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|219851621|ref|YP_002466053.1| - 1.4e-09 37.9 0.0 4e-09 36.3 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|219851621|ref|YP_002466053.1| - 2.1e-05 24.4 0.0 2.6e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|219851621|ref|YP_002466053.1| - 0.0019 18.1 0.0 0.0056 16.5 0.0 1.7 2 0 0 2 2 2 1 SNO glutamine amidotransferase family BPL_N PF09825.9 gi|219851621|ref|YP_002466053.1| - 0.041 13.0 0.1 0.06 12.4 0.1 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal FeThRed_B PF02943.15 gi|219851622|ref|YP_002466054.1| - 3.7e-23 81.6 1.0 4.1e-23 81.4 1.0 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain TrwC PF08751.11 gi|219851622|ref|YP_002466054.1| - 0.096 12.2 0.1 2.3 7.6 0.0 2.0 1 1 1 2 2 2 0 TrwC relaxase Phage_tail_T PF06223.12 gi|219851622|ref|YP_002466054.1| - 0.16 12.5 0.0 0.18 12.3 0.0 1.1 1 0 0 1 1 1 0 Minor tail protein T SIMPL PF04402.14 gi|219851623|ref|YP_002466055.1| - 2.8e-39 135.7 14.8 3.2e-39 135.5 14.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Ashwin PF15323.6 gi|219851623|ref|YP_002466055.1| - 0.14 12.1 3.3 0.21 11.6 3.3 1.3 1 0 0 1 1 1 0 Developmental protein UPF0060 PF02694.15 gi|219851624|ref|YP_002466056.1| - 1.2e-43 147.7 9.8 1.4e-43 147.5 9.8 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family DUF973 PF06157.11 gi|219851624|ref|YP_002466056.1| - 0.82 8.7 7.3 0.92 8.5 7.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) TMEM238 PF15125.6 gi|219851624|ref|YP_002466056.1| - 1.3 9.3 12.5 2.2 8.5 2.1 2.6 3 0 0 3 3 3 0 TMEM238 protein family PAS PF00989.25 gi|219851626|ref|YP_002466058.1| - 2.8e-24 85.3 0.0 8.3e-12 45.1 0.0 3.9 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|219851626|ref|YP_002466058.1| - 3.2e-22 78.8 0.6 6.5e-09 36.0 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|219851626|ref|YP_002466058.1| - 7.2e-20 71.3 0.0 3.7e-06 27.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|219851626|ref|YP_002466058.1| - 9e-15 54.3 0.0 8.5e-05 22.5 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|219851626|ref|YP_002466058.1| - 3.4e-09 36.9 0.0 0.001 19.3 0.1 2.8 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|219851626|ref|YP_002466058.1| - 1.5e-07 31.6 0.8 0.0013 18.8 0.0 3.5 3 1 0 3 3 3 2 PAS fold TBPIP PF07106.13 gi|219851626|ref|YP_002466058.1| - 2.7e-05 24.0 0.1 0.00011 22.1 0.0 2.1 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain HTH_11 PF08279.12 gi|219851626|ref|YP_002466058.1| - 0.0085 16.0 0.3 0.099 12.6 0.1 2.6 2 0 0 2 2 2 1 HTH domain FeoC PF09012.10 gi|219851626|ref|YP_002466058.1| - 0.016 15.2 0.3 0.056 13.5 0.0 2.0 2 0 0 2 2 2 0 FeoC like transcriptional regulator RPA_C PF08784.11 gi|219851626|ref|YP_002466058.1| - 0.032 14.9 0.2 0.082 13.6 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_IclR PF09339.10 gi|219851626|ref|YP_002466058.1| - 0.075 12.8 0.0 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain CxxCxxCC PF03692.15 gi|219851628|ref|YP_002466060.1| - 2.4e-08 34.6 3.3 4.1e-08 33.8 3.3 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ABC_tran PF00005.27 gi|219851629|ref|YP_002466061.1| - 6.2e-30 104.5 0.0 8.4e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851629|ref|YP_002466061.1| - 2.5e-12 47.2 0.1 3.9e-07 30.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ATP_bind_1 PF03029.17 gi|219851629|ref|YP_002466061.1| - 0.00096 19.0 0.0 0.019 14.8 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein SMC_N PF02463.19 gi|219851629|ref|YP_002466061.1| - 0.001 18.5 0.0 0.24 10.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|219851629|ref|YP_002466061.1| - 0.0077 16.0 0.0 0.2 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|219851629|ref|YP_002466061.1| - 0.009 15.7 0.1 0.026 14.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|219851629|ref|YP_002466061.1| - 0.026 15.0 0.0 0.044 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|219851629|ref|YP_002466061.1| - 0.047 13.3 0.0 0.081 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|219851629|ref|YP_002466061.1| - 0.11 12.7 0.4 2.2 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|219851630|ref|YP_002466062.1| - 1.1e-21 77.3 23.3 1.1e-21 77.3 23.3 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219851630|ref|YP_002466062.1| - 4.4e-08 32.6 26.5 6.2e-08 32.1 26.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Voltage_CLC PF00654.20 gi|219851631|ref|YP_002466063.1| - 0.55 9.4 16.1 2 7.6 13.4 2.1 1 1 1 2 2 2 0 Voltage gated chloride channel TPR_1 PF00515.28 gi|219851632|ref|YP_002466064.1| - 2.4e-17 62.0 8.3 7.5e-10 38.2 1.3 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219851632|ref|YP_002466064.1| - 1.3e-14 53.1 8.4 1.9e-08 33.8 0.5 2.5 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219851632|ref|YP_002466064.1| - 3.6e-14 52.2 15.2 1.7e-08 34.0 6.4 2.1 1 1 1 2 2 2 2 TPR repeat TPR_16 PF13432.6 gi|219851632|ref|YP_002466064.1| - 1e-12 48.4 0.8 1.7e-12 47.8 0.8 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219851632|ref|YP_002466064.1| - 1.5e-11 43.5 6.1 4.6e-06 26.4 0.7 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219851632|ref|YP_002466064.1| - 5.4e-10 39.4 1.4 8.2e-10 38.8 1.4 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|219851632|ref|YP_002466064.1| - 1.6e-08 35.0 8.3 0.00039 20.9 0.6 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219851632|ref|YP_002466064.1| - 2.7e-08 33.9 1.3 0.0024 18.6 0.3 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219851632|ref|YP_002466064.1| - 1.1e-06 28.9 6.1 0.0037 17.5 0.5 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219851632|ref|YP_002466064.1| - 8.4e-06 25.5 2.6 0.011 15.7 0.5 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_3 PF07720.12 gi|219851632|ref|YP_002466064.1| - 8.7e-05 22.4 9.8 0.0071 16.3 2.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|219851632|ref|YP_002466064.1| - 0.00015 21.5 2.5 0.11 12.4 0.5 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat MIT PF04212.18 gi|219851632|ref|YP_002466064.1| - 0.00066 19.7 4.5 0.41 10.7 0.4 2.3 2 0 0 2 2 2 2 MIT (microtubule interacting and transport) domain TPR_21 PF09976.9 gi|219851632|ref|YP_002466064.1| - 0.0009 19.0 9.3 0.061 13.0 8.2 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat-like domain TPR_17 PF13431.6 gi|219851632|ref|YP_002466064.1| - 0.0049 17.2 7.8 1.4 9.5 1.8 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|219851632|ref|YP_002466064.1| - 0.0097 14.7 0.0 0.011 14.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase G tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|219851632|ref|YP_002466064.1| - 0.024 14.7 4.7 1.1 9.3 1.0 2.2 1 1 1 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|219851632|ref|YP_002466064.1| - 0.026 13.4 2.0 0.029 13.3 2.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 Glutaminase PF04960.15 gi|219851632|ref|YP_002466064.1| - 0.075 12.2 0.4 0.15 11.2 0.4 1.5 1 1 1 2 2 2 0 Glutaminase TPR_6 PF13174.6 gi|219851632|ref|YP_002466064.1| - 0.077 13.7 8.9 1.3 9.8 0.5 2.7 3 0 0 3 3 2 0 Tetratricopeptide repeat FliP PF00813.20 gi|219851632|ref|YP_002466064.1| - 0.1 12.5 0.1 0.15 11.9 0.0 1.3 1 1 0 1 1 1 0 FliP family TPR_20 PF14561.6 gi|219851632|ref|YP_002466064.1| - 0.15 12.4 3.9 0.31 11.4 3.9 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219851632|ref|YP_002466064.1| - 0.19 11.9 0.9 1.2 9.4 1.0 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat DUF3821 PF12863.7 gi|219851633|ref|YP_002466065.1| - 3.5e-47 161.0 0.2 1.1e-46 159.4 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) Lipase_GDSL_2 PF13472.6 gi|219851633|ref|YP_002466065.1| - 1.7e-18 67.6 1.0 4.1e-18 66.4 1.0 1.6 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|219851633|ref|YP_002466065.1| - 1.1e-11 45.1 0.0 2.1e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase OSK PF17182.4 gi|219851633|ref|YP_002466065.1| - 0.042 13.1 0.0 0.076 12.2 0.0 1.3 1 0 0 1 1 1 0 OSK domain ORC6 PF05460.13 gi|219851633|ref|YP_002466065.1| - 0.22 10.7 4.2 0.38 10.0 4.2 1.3 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) HAD_2 PF13419.6 gi|219851634|ref|YP_002466066.1| - 4e-25 88.9 0.0 7.1e-25 88.1 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|219851634|ref|YP_002466066.1| - 1.3e-15 58.3 0.0 1.2e-13 51.9 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|219851634|ref|YP_002466066.1| - 1.9e-08 34.2 0.0 1e-06 28.7 0.0 2.6 3 0 0 3 3 3 1 HAD-hyrolase-like HAD PF12710.7 gi|219851634|ref|YP_002466066.1| - 0.016 15.6 0.4 0.032 14.6 0.4 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|219851634|ref|YP_002466066.1| - 0.092 12.9 0.0 0.21 11.7 0.0 1.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase N6_Mtase PF02384.16 gi|219851635|ref|YP_002466067.1| - 0.028 13.7 0.0 0.042 13.1 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase AviRa PF11599.8 gi|219851635|ref|YP_002466067.1| - 0.063 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa HATPase_c PF02518.26 gi|219851636|ref|YP_002466068.1| - 8.2e-25 87.5 0.0 1.7e-24 86.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KaiB PF07689.12 gi|219851636|ref|YP_002466068.1| - 1.8e-22 78.9 0.0 3.5e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 KaiB domain PAS_9 PF13426.7 gi|219851636|ref|YP_002466068.1| - 1.2e-14 54.4 0.0 6.5e-06 26.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219851636|ref|YP_002466068.1| - 3.5e-13 49.5 0.2 1.5e-06 28.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|219851636|ref|YP_002466068.1| - 1.1e-10 41.4 0.2 2.8e-10 40.1 0.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|219851636|ref|YP_002466068.1| - 3.9e-10 39.5 0.1 0.0015 18.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|219851636|ref|YP_002466068.1| - 7e-10 39.1 0.1 0.00014 22.1 0.0 3.3 2 1 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.6 gi|219851636|ref|YP_002466068.1| - 2.9e-06 27.1 0.0 5.9e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 gi|219851636|ref|YP_002466068.1| - 5.1e-05 23.4 0.1 0.05 13.8 0.0 3.2 2 1 0 2 2 2 2 PAS fold Sm_multidrug_ex PF06695.11 gi|219851638|ref|YP_002466070.1| - 2e-08 34.9 2.2 2e-08 34.9 2.2 1.4 2 0 0 2 2 2 1 Putative small multi-drug export protein CMD PF02627.20 gi|219851640|ref|YP_002466072.1| - 3.1e-07 30.3 0.2 3.3e-07 30.3 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family ApoLp-III PF07464.11 gi|219851640|ref|YP_002466072.1| - 0.14 12.3 0.3 0.19 11.8 0.3 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) His_Phos_1 PF00300.22 gi|219851643|ref|YP_002466075.1| - 1.1e-15 57.8 0.6 5e-14 52.5 0.1 2.0 2 0 0 2 2 2 2 Histidine phosphatase superfamily (branch 1) NAD_binding_1 PF00175.21 gi|219851644|ref|YP_002466076.1| - 1.2e-22 80.7 0.0 5.3e-22 78.5 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|219851644|ref|YP_002466076.1| - 2.6e-14 53.4 0.0 3.9e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|219851644|ref|YP_002466076.1| - 3.4e-07 30.5 0.0 0.00012 22.2 0.1 2.3 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|219851644|ref|YP_002466076.1| - 0.12 12.5 0.1 0.37 10.9 0.1 1.8 1 1 0 1 1 1 0 FAD-binding domain ABC_tran PF00005.27 gi|219851645|ref|YP_002466077.1| - 2.3e-24 86.5 0.0 3.1e-24 86.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851645|ref|YP_002466077.1| - 1.3e-09 38.3 5.5 4e-05 23.6 0.6 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|219851645|ref|YP_002466077.1| - 2.7e-06 27.9 0.0 6.8e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|219851645|ref|YP_002466077.1| - 0.00021 21.0 0.1 0.00064 19.4 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|219851645|ref|YP_002466077.1| - 0.00092 19.5 0.0 0.0042 17.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|219851645|ref|YP_002466077.1| - 0.0012 18.3 0.1 0.0033 16.9 0.1 1.6 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|219851645|ref|YP_002466077.1| - 0.0043 16.6 0.0 0.0069 15.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|219851645|ref|YP_002466077.1| - 0.0065 15.7 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) MMR_HSR1 PF01926.23 gi|219851645|ref|YP_002466077.1| - 0.0068 16.5 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|219851645|ref|YP_002466077.1| - 0.0081 16.1 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|219851645|ref|YP_002466077.1| - 0.0091 16.5 0.2 0.013 16.0 0.2 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|219851645|ref|YP_002466077.1| - 0.025 14.3 0.0 0.061 13.1 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|219851645|ref|YP_002466077.1| - 0.029 14.1 0.0 0.083 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|219851645|ref|YP_002466077.1| - 0.043 13.5 0.1 0.086 12.5 0.1 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain G-alpha PF00503.20 gi|219851645|ref|YP_002466077.1| - 0.051 12.7 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit KAP_NTPase PF07693.14 gi|219851645|ref|YP_002466077.1| - 0.051 12.8 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Rad17 PF03215.15 gi|219851645|ref|YP_002466077.1| - 0.054 13.4 0.0 1 9.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|219851645|ref|YP_002466077.1| - 0.059 13.1 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_24 PF13479.6 gi|219851645|ref|YP_002466077.1| - 0.068 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|219851645|ref|YP_002466077.1| - 0.069 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.6 gi|219851645|ref|YP_002466077.1| - 0.074 12.8 0.0 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|219851645|ref|YP_002466077.1| - 0.091 12.7 0.1 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|219851645|ref|YP_002466077.1| - 0.1 11.9 0.0 0.54 9.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|219851645|ref|YP_002466077.1| - 0.11 11.9 0.0 0.58 9.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein AAA_32 PF13654.6 gi|219851645|ref|YP_002466077.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|219851645|ref|YP_002466077.1| - 0.14 12.5 0.0 0.33 11.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|219851645|ref|YP_002466077.1| - 0.15 12.0 0.0 4 7.3 0.0 2.4 2 1 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|219851645|ref|YP_002466077.1| - 0.16 12.4 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|219851645|ref|YP_002466077.1| - 0.18 11.9 0.0 1.7 8.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain NosD PF05048.13 gi|219851646|ref|YP_002466078.1| - 2.4e-33 115.4 11.9 2.4e-33 115.4 11.9 2.1 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219851646|ref|YP_002466078.1| - 1.2e-09 38.2 13.7 4e-09 36.5 13.7 1.9 1 0 0 1 1 1 1 Right handed beta helix region Peptidase_C1 PF00112.23 gi|219851646|ref|YP_002466078.1| - 3.3e-09 37.2 3.9 1e-07 32.3 3.9 2.3 1 1 0 1 1 1 1 Papain family cysteine protease DUF1565 PF07602.11 gi|219851646|ref|YP_002466078.1| - 0.0048 16.3 5.3 0.012 14.9 5.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Dockerin_1 PF00404.18 gi|219851646|ref|YP_002466078.1| - 0.0095 16.1 0.5 0.03 14.5 0.0 2.1 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|219851646|ref|YP_002466078.1| - 0.01 15.3 5.7 1.3 8.7 0.1 3.3 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.6 gi|219851646|ref|YP_002466078.1| - 0.023 14.6 4.1 1.5 8.9 0.1 3.0 3 0 0 3 3 3 0 EF-hand domain NosD PF05048.13 gi|219851647|ref|YP_002466079.1| - 1.1e-35 123.0 9.6 1.1e-35 123.0 9.6 2.2 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219851647|ref|YP_002466079.1| - 2.6e-11 43.6 8.0 2.6e-11 43.6 8.0 2.5 3 0 0 3 3 3 1 Right handed beta helix region Peptidase_C1 PF00112.23 gi|219851647|ref|YP_002466079.1| - 1.3e-09 38.5 6.2 5.7e-09 36.4 6.2 1.9 1 1 0 1 1 1 1 Papain family cysteine protease Dockerin_1 PF00404.18 gi|219851647|ref|YP_002466079.1| - 0.021 15.0 0.3 0.17 12.1 0.0 2.5 2 0 0 2 2 2 0 Dockerin type I domain EF-hand_1 PF00036.32 gi|219851647|ref|YP_002466079.1| - 0.36 10.5 7.3 1.4 8.6 0.2 3.3 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.6 gi|219851647|ref|YP_002466079.1| - 1.3 9.2 5.6 2.2 8.4 0.2 3.0 3 0 0 3 3 3 0 EF-hand domain CPSase_L_D2 PF02786.17 gi|219851648|ref|YP_002466080.1| - 2.9e-74 249.1 0.1 4.7e-74 248.4 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|219851648|ref|YP_002466080.1| - 4.7e-46 155.9 0.0 1.1e-45 154.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|219851648|ref|YP_002466080.1| - 1.6e-38 131.1 0.0 3.4e-38 130.1 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|219851648|ref|YP_002466080.1| - 1.2e-10 41.3 0.0 2.4e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|219851648|ref|YP_002466080.1| - 5.9e-05 22.7 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|219851648|ref|YP_002466080.1| - 6.7e-05 22.6 0.0 0.33 10.5 0.0 2.3 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|219851648|ref|YP_002466080.1| - 0.00028 20.9 0.0 0.00054 20.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|219851648|ref|YP_002466080.1| - 0.029 13.8 0.0 0.06 12.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Oxidored_nitro PF00148.19 gi|219851648|ref|YP_002466080.1| - 0.051 12.3 0.0 0.68 8.6 0.0 2.2 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase RNA_polI_A14 PF08203.11 gi|219851648|ref|YP_002466080.1| - 0.053 14.2 0.1 0.14 12.9 0.1 1.7 1 0 0 1 1 1 0 Yeast RNA polymerase I subunit RPA14 Radical_SAM PF04055.21 gi|219851648|ref|YP_002466080.1| - 0.081 13.3 0.0 1.9 8.8 0.0 2.9 2 1 0 2 2 2 0 Radical SAM superfamily PYC_OADA PF02436.18 gi|219851649|ref|YP_002466081.1| - 4.6e-53 179.9 0.0 7.9e-53 179.2 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|219851649|ref|YP_002466081.1| - 3.6e-43 148.0 0.0 5.2e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|219851649|ref|YP_002466081.1| - 6.8e-16 57.9 3.7 1.5e-15 56.8 2.8 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|219851649|ref|YP_002466081.1| - 1.7e-08 34.1 1.3 0.00053 19.8 0.6 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|219851649|ref|YP_002466081.1| - 0.00024 20.4 0.6 0.26 10.5 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|219851649|ref|YP_002466081.1| - 0.001 19.8 1.2 0.14 12.9 0.1 2.8 3 0 0 3 3 3 1 HlyD family secretion protein GCV_H PF01597.19 gi|219851649|ref|YP_002466081.1| - 0.15 11.9 1.4 3.7 7.4 0.0 2.3 1 1 1 2 2 2 0 Glycine cleavage H-protein ABC_tran PF00005.27 gi|219851651|ref|YP_002466083.1| - 2.4e-14 54.0 0.4 2.6e-13 50.7 0.4 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|219851651|ref|YP_002466083.1| - 3.8e-06 26.5 0.0 0.0057 16.1 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219851651|ref|YP_002466083.1| - 0.0025 17.5 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219851651|ref|YP_002466083.1| - 0.0049 17.4 0.0 0.0081 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|219851651|ref|YP_002466083.1| - 0.0089 15.3 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_21 PF13304.6 gi|219851651|ref|YP_002466083.1| - 0.026 14.3 0.1 1.6 8.5 0.1 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|219851651|ref|YP_002466083.1| - 0.037 13.7 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|219851651|ref|YP_002466083.1| - 0.046 14.1 0.1 0.063 13.6 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|219851651|ref|YP_002466083.1| - 0.2 10.8 0.0 0.56 9.4 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|219851652|ref|YP_002466084.1| - 4.7e-23 82.2 0.0 6.4e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|219851652|ref|YP_002466084.1| - 1.2e-11 44.5 0.0 7.5e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|219851652|ref|YP_002466084.1| - 1.1e-10 41.9 0.1 0.00019 21.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|219851652|ref|YP_002466084.1| - 3.3e-06 27.4 0.2 1.3e-05 25.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|219851652|ref|YP_002466084.1| - 9.3e-06 26.1 0.0 2.1e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|219851652|ref|YP_002466084.1| - 3e-05 23.7 0.1 6.8e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219851652|ref|YP_002466084.1| - 5.2e-05 23.8 0.0 7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|219851652|ref|YP_002466084.1| - 0.00066 19.4 0.5 0.0081 15.9 0.5 2.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|219851652|ref|YP_002466084.1| - 0.0014 18.5 0.9 0.49 10.3 0.2 2.2 2 0 0 2 2 2 2 NACHT domain AAA PF00004.29 gi|219851652|ref|YP_002466084.1| - 0.0017 18.8 0.1 0.018 15.4 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|219851652|ref|YP_002466084.1| - 0.0024 17.5 0.1 0.0057 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|219851652|ref|YP_002466084.1| - 0.006 16.3 0.0 0.0084 15.9 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|219851652|ref|YP_002466084.1| - 0.023 14.7 0.0 0.47 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MukB PF04310.12 gi|219851652|ref|YP_002466084.1| - 0.065 13.0 0.2 0.46 10.2 0.0 2.0 2 0 0 2 2 2 0 MukB N-terminal ABC_ATPase PF09818.9 gi|219851652|ref|YP_002466084.1| - 0.081 11.7 0.2 0.17 10.6 0.1 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|219851652|ref|YP_002466084.1| - 0.12 12.6 0.3 0.16 12.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|219851652|ref|YP_002466084.1| - 0.12 12.1 0.6 1 9.1 0.6 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase cobW PF02492.19 gi|219851652|ref|YP_002466084.1| - 0.19 11.3 0.6 0.33 10.5 0.6 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|219851652|ref|YP_002466084.1| - 0.34 8.4 0.1 0.45 8.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BioY PF02632.14 gi|219851653|ref|YP_002466085.1| - 1.1e-37 129.0 14.4 1.6e-37 128.5 14.4 1.2 1 0 0 1 1 1 1 BioY family ECF-ribofla_trS PF07155.12 gi|219851653|ref|YP_002466085.1| - 0.25 11.3 12.2 0.39 10.7 0.4 2.7 2 1 1 3 3 3 0 ECF-type riboflavin transporter, S component BPL_LplA_LipB PF03099.19 gi|219851654|ref|YP_002466086.1| - 6.9e-16 58.4 0.0 1.1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|219851654|ref|YP_002466086.1| - 9.1e-15 54.4 0.0 2e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|219851654|ref|YP_002466086.1| - 3.5e-11 42.8 0.0 7.3e-11 41.8 0.0 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|219851654|ref|YP_002466086.1| - 4.8e-07 29.2 0.0 8.6e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|219851654|ref|YP_002466086.1| - 0.00041 20.2 0.0 0.00085 19.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family BPL_LplA_LipB_2 PF16917.5 gi|219851654|ref|YP_002466086.1| - 0.0009 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_39 PF14090.6 gi|219851654|ref|YP_002466086.1| - 0.0024 17.6 0.0 0.007 16.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|219851654|ref|YP_002466086.1| - 0.013 15.7 0.1 0.043 14.0 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|219851654|ref|YP_002466086.1| - 0.013 15.2 0.0 0.036 13.8 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|219851654|ref|YP_002466086.1| - 0.02 14.9 0.6 5.4 7.1 0.0 3.6 3 1 0 3 3 3 0 Crp-like helix-turn-helix domain MutL_C PF08676.11 gi|219851654|ref|YP_002466086.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 MutL C terminal dimerisation domain Phage_X PF05155.15 gi|219851654|ref|YP_002466086.1| - 0.13 12.7 0.0 1.5 9.3 0.0 2.3 2 0 0 2 2 2 0 Phage X family DUF2111 PF09884.9 gi|219851655|ref|YP_002466087.1| - 2.8e-37 126.6 1.3 4.2e-37 126.1 1.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Oxidored_molyb PF00174.19 gi|219851655|ref|YP_002466087.1| - 0.071 12.7 0.0 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain LRAT PF04970.13 gi|219851655|ref|YP_002466087.1| - 0.073 13.4 0.0 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 Lecithin retinol acyltransferase BPL_N PF09825.9 gi|219851656|ref|YP_002466088.1| - 0.053 12.6 0.1 0.31 10.1 0.0 1.9 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal RtcB PF01139.17 gi|219851657|ref|YP_002466089.1| - 1.5e-163 544.8 0.0 1.7e-163 544.6 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.16 gi|219851658|ref|YP_002466090.1| - 5.7e-26 91.4 0.0 6.6e-26 91.2 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) zf_C2H2_13 PF18508.1 gi|219851659|ref|YP_002466091.1| - 0.0006 19.3 0.2 0.0009 18.8 0.2 1.3 1 0 0 1 1 1 1 Zinc finger domain DUF2551 PF10826.8 gi|219851660|ref|YP_002466092.1| - 2.3e-32 111.1 0.1 2.7e-32 110.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) SecD_SecF PF02355.16 gi|219851661|ref|YP_002466093.1| - 2.5e-32 111.8 11.0 2.5e-32 111.8 11.0 1.6 2 0 0 2 2 2 1 Protein export membrane protein ODV-E18 PF10717.9 gi|219851661|ref|YP_002466093.1| - 0.0017 18.2 0.3 0.005 16.7 0.3 1.8 1 0 0 1 1 1 1 Occlusion-derived virus envelope protein ODV-E18 Sec_GG PF07549.14 gi|219851661|ref|YP_002466093.1| - 0.0097 15.4 0.1 0.025 14.1 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|219851661|ref|YP_002466093.1| - 1.4 6.9 9.5 1.9 6.4 9.5 1.2 1 0 0 1 1 1 0 Patched family DUF1290 PF06947.12 gi|219851661|ref|YP_002466093.1| - 5.9 7.0 16.4 1.5 9.0 1.6 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1290) SecD_SecF PF02355.16 gi|219851662|ref|YP_002466094.1| - 5.4e-14 52.0 10.0 1.2e-13 50.9 10.0 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|219851662|ref|YP_002466094.1| - 9.4e-05 21.5 17.5 9.4e-05 21.5 17.5 1.9 3 0 0 3 3 3 1 MMPL family Thioredoxin PF00085.20 gi|219851663|ref|YP_002466095.1| - 7.1e-24 83.8 0.0 7.7e-24 83.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|219851663|ref|YP_002466095.1| - 3.7e-09 37.0 0.2 3.8e-08 33.7 0.2 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|219851663|ref|YP_002466095.1| - 9e-06 25.7 0.0 1.1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|219851663|ref|YP_002466095.1| - 0.00013 22.2 0.0 0.0019 18.5 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|219851663|ref|YP_002466095.1| - 0.00032 20.7 0.1 0.00037 20.5 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|219851663|ref|YP_002466095.1| - 0.00039 20.3 0.0 0.00046 20.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.6 gi|219851663|ref|YP_002466095.1| - 0.00044 20.4 0.1 0.00084 19.5 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.10 gi|219851663|ref|YP_002466095.1| - 0.0008 19.1 0.1 0.026 14.2 0.0 2.0 1 1 1 2 2 2 1 Redoxin DUF4788 PF16032.5 gi|219851663|ref|YP_002466095.1| - 0.004 16.1 0.0 0.0044 16.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4788) Ribosomal_L9_C PF03948.14 gi|219851663|ref|YP_002466095.1| - 0.01 16.3 0.1 0.014 15.8 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain KaiB PF07689.12 gi|219851663|ref|YP_002466095.1| - 0.012 15.3 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 KaiB domain Thioredoxin_9 PF14595.6 gi|219851663|ref|YP_002466095.1| - 0.023 14.5 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.6 gi|219851663|ref|YP_002466095.1| - 0.057 13.6 0.0 0.057 13.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 gi|219851663|ref|YP_002466095.1| - 0.073 12.8 0.1 0.21 11.3 0.0 1.6 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Tiam_CC_Ex PF18385.1 gi|219851663|ref|YP_002466095.1| - 0.17 12.3 0.4 0.5 10.8 0.1 1.7 1 1 1 2 2 2 0 T-lymphoma invasion and metastasis CC-Ex domain F420_oxidored PF03807.17 gi|219851664|ref|YP_002466096.1| - 3.5e-12 46.7 0.0 7.2e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HhH-GPD PF00730.25 gi|219851665|ref|YP_002466097.1| - 3.2e-12 46.8 0.0 5e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|219851665|ref|YP_002466097.1| - 1.9e-05 24.3 0.0 9.3e-05 22.1 0.0 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|219851665|ref|YP_002466097.1| - 0.12 13.0 0.0 2.1 9.0 0.0 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain Aldolase_II PF00596.21 gi|219851666|ref|YP_002466098.1| - 4.5e-27 95.2 0.0 5.2e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain PNP_UDP_1 PF01048.20 gi|219851667|ref|YP_002466099.1| - 5.2e-28 97.9 0.9 6.6e-28 97.5 0.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Amidohydro_1 PF01979.20 gi|219851668|ref|YP_002466100.1| - 2e-63 214.8 0.1 2.5e-63 214.5 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|219851668|ref|YP_002466100.1| - 6.1e-15 55.6 0.0 1.2e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|219851668|ref|YP_002466100.1| - 0.0008 18.8 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Polysacc_deac_1 PF01522.21 gi|219851669|ref|YP_002466101.1| - 2.2e-10 40.5 0.0 4.5e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase THB PF18362.1 gi|219851669|ref|YP_002466101.1| - 0.083 12.5 0.6 0.62 9.7 0.0 2.7 3 0 0 3 3 3 0 Tri-helix bundle domain Metallophos_2 PF12850.7 gi|219851669|ref|YP_002466101.1| - 0.17 12.1 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Na_H_Exchanger PF00999.21 gi|219851670|ref|YP_002466102.1| - 8.5e-31 107.1 53.7 1.2e-30 106.6 53.7 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AMP-binding PF00501.28 gi|219851671|ref|YP_002466103.1| - 1.3e-103 346.9 0.0 1.6e-103 346.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|219851671|ref|YP_002466103.1| - 1.1e-16 61.6 0.0 5.3e-16 59.4 0.0 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|219851671|ref|YP_002466103.1| - 0.0013 18.9 0.0 0.0031 17.8 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_5 PF01022.20 gi|219851672|ref|YP_002466104.1| - 1.3e-14 53.8 0.2 2.2e-14 53.1 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|219851672|ref|YP_002466104.1| - 1.2e-11 44.5 0.0 1.8e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|219851672|ref|YP_002466104.1| - 3.8e-05 23.8 0.0 7.4e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|219851672|ref|YP_002466104.1| - 0.0021 18.1 0.0 0.018 15.1 0.0 2.1 2 0 0 2 2 2 1 Mrr N-terminal domain CdhD PF03599.16 gi|219851673|ref|YP_002466105.1| - 4.5e-12 45.4 0.0 6.4e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Fer4 PF00037.27 gi|219851674|ref|YP_002466106.1| - 1.1e-12 47.2 12.9 8.6e-07 28.5 1.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219851674|ref|YP_002466106.1| - 3.2e-08 33.6 12.7 3.2e-08 33.6 12.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851674|ref|YP_002466106.1| - 5.5e-08 32.4 16.0 6.1e-06 26.0 3.5 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851674|ref|YP_002466106.1| - 2.8e-07 30.3 14.1 1.4e-05 24.9 1.5 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851674|ref|YP_002466106.1| - 2.2e-06 28.2 25.5 3.2e-05 24.4 0.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851674|ref|YP_002466106.1| - 3.4e-06 27.1 24.6 0.00026 21.1 13.9 2.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219851674|ref|YP_002466106.1| - 4.7e-06 26.6 15.0 4.7e-06 26.6 15.0 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851674|ref|YP_002466106.1| - 0.00012 22.9 24.1 0.0028 18.6 2.5 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|219851674|ref|YP_002466106.1| - 0.0017 18.8 25.9 0.0032 17.9 1.6 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851674|ref|YP_002466106.1| - 0.0017 18.8 0.7 0.0017 18.8 0.7 3.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219851674|ref|YP_002466106.1| - 0.026 15.3 0.6 0.026 15.3 0.6 2.9 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219851674|ref|YP_002466106.1| - 0.096 13.2 1.9 0.096 13.2 1.9 3.9 4 1 0 4 4 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|219851674|ref|YP_002466106.1| - 0.13 13.3 6.8 0.13 13.3 6.8 3.7 4 1 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219851674|ref|YP_002466106.1| - 0.22 11.7 15.8 0.14 12.4 2.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|219851674|ref|YP_002466106.1| - 0.79 9.9 7.4 4.6 7.4 1.9 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fae PF08714.11 gi|219851675|ref|YP_002466107.1| - 3.5e-65 218.8 0.0 6.6e-65 217.9 0.0 1.5 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|219851675|ref|YP_002466107.1| - 1.5e-22 80.3 2.8 4.3e-22 78.8 2.8 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|219851675|ref|YP_002466107.1| - 0.008 16.0 1.0 0.013 15.2 0.3 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Ribul_P_3_epim PF00834.19 gi|219851675|ref|YP_002466107.1| - 0.016 14.6 2.0 0.11 11.9 2.0 2.2 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|219851675|ref|YP_002466107.1| - 0.14 11.1 3.9 0.24 10.4 3.9 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Beta_helix PF13229.6 gi|219851676|ref|YP_002466108.1| - 6.5e-20 71.6 18.2 6.6e-17 61.8 6.5 2.3 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.13 gi|219851676|ref|YP_002466108.1| - 2.8e-17 62.8 9.2 7.1e-17 61.5 9.2 1.7 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Abhydrolase_1 PF00561.20 gi|219851676|ref|YP_002466108.1| - 1.8e-07 31.1 0.0 3e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|219851676|ref|YP_002466108.1| - 7.4e-07 30.0 2.5 1.4e-06 29.1 2.5 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219851676|ref|YP_002466108.1| - 7.3e-05 22.1 0.0 0.00018 20.8 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|219851676|ref|YP_002466108.1| - 0.0026 16.5 0.3 0.012 14.3 0.0 2.2 4 0 0 4 4 4 1 Ndr family Pectate_lyase_3 PF12708.7 gi|219851676|ref|YP_002466108.1| - 0.0073 16.2 6.7 0.67 9.8 0.4 2.5 2 0 0 2 2 2 2 Pectate lyase superfamily protein DUF5308 PF17233.2 gi|219851676|ref|YP_002466108.1| - 0.022 15.0 0.1 0.31 11.2 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5308) DUF2070 PF09843.9 gi|219851677|ref|YP_002466109.1| - 0.021 13.1 6.3 0.0084 14.4 4.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4191 PF13829.6 gi|219851677|ref|YP_002466109.1| - 6.1 6.1 4.9 5 6.4 3.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF5305 PF17231.2 gi|219851678|ref|YP_002466110.1| - 0.006 16.0 0.3 0.006 16.0 0.3 1.9 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DEAD PF00270.29 gi|219851679|ref|YP_002466111.1| - 2.2e-49 167.6 0.1 5.9e-49 166.2 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|219851679|ref|YP_002466111.1| - 2e-31 108.6 0.4 1.3e-29 102.7 0.0 3.2 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DbpA PF03880.15 gi|219851679|ref|YP_002466111.1| - 2.1e-27 94.9 0.2 6e-27 93.4 0.2 1.9 1 0 0 1 1 1 1 DbpA RNA binding domain CMS1 PF14617.6 gi|219851679|ref|YP_002466111.1| - 0.021 14.2 0.5 0.045 13.1 0.0 1.7 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit ResIII PF04851.15 gi|219851679|ref|YP_002466111.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RseC_MucC PF04246.12 gi|219851680|ref|YP_002466112.1| - 0.23 11.4 1.8 0.26 11.2 1.8 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC FAD_binding_3 PF01494.19 gi|219851681|ref|YP_002466113.1| - 3.1e-14 53.0 2.8 1.9e-08 34.0 0.9 3.0 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|219851681|ref|YP_002466113.1| - 2e-08 33.7 0.2 0.00027 20.1 0.1 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|219851681|ref|YP_002466113.1| - 9.6e-08 31.3 0.2 0.00016 20.7 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|219851681|ref|YP_002466113.1| - 1.2e-07 31.5 3.8 1.8e-07 30.9 3.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|219851681|ref|YP_002466113.1| - 3.3e-06 26.1 0.7 4.7e-06 25.6 0.7 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|219851681|ref|YP_002466113.1| - 7.4e-06 25.4 1.2 1.9e-05 24.1 1.2 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|219851681|ref|YP_002466113.1| - 7.8e-06 25.2 3.9 1.2e-05 24.6 3.9 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|219851681|ref|YP_002466113.1| - 0.00011 22.0 4.9 0.089 12.4 4.3 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|219851681|ref|YP_002466113.1| - 0.00011 21.5 0.1 0.00017 20.9 0.1 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|219851681|ref|YP_002466113.1| - 0.00014 22.0 0.9 0.00034 20.8 0.9 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|219851681|ref|YP_002466113.1| - 0.00017 20.8 3.9 0.00019 20.6 3.0 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|219851681|ref|YP_002466113.1| - 0.00053 19.3 1.3 0.00081 18.7 1.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|219851681|ref|YP_002466113.1| - 0.18 12.4 0.2 0.82 10.3 0.3 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|219851681|ref|YP_002466113.1| - 0.2 10.9 1.4 0.33 10.2 1.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|219851681|ref|YP_002466113.1| - 0.35 10.7 0.7 0.87 9.4 0.7 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDGLE PF13190.6 gi|219851682|ref|YP_002466114.1| - 1.9e-17 62.9 0.2 2.3e-17 62.7 0.2 1.1 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.17 gi|219851682|ref|YP_002466114.1| - 0.0089 15.8 0.2 0.012 15.4 0.2 1.2 1 0 0 1 1 1 1 Yip1 domain DUF2613 PF11021.8 gi|219851682|ref|YP_002466114.1| - 0.018 15.1 7.5 0.053 13.6 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) NepR PF18557.1 gi|219851682|ref|YP_002466114.1| - 0.12 12.1 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 Anti-sigma factor NepR TPPK_C PF12555.8 gi|219851682|ref|YP_002466114.1| - 0.48 10.5 9.8 0.82 9.8 1.1 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal ABC_tran PF00005.27 gi|219851683|ref|YP_002466115.1| - 2.3e-30 105.9 0.0 3.1e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851683|ref|YP_002466115.1| - 1.4e-11 44.8 0.5 2.4e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219851683|ref|YP_002466115.1| - 3.5e-06 26.6 0.0 7.2e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219851683|ref|YP_002466115.1| - 0.0018 18.8 0.0 0.0024 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219851683|ref|YP_002466115.1| - 0.0018 17.9 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|219851683|ref|YP_002466115.1| - 0.0086 16.4 0.0 0.023 14.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|219851683|ref|YP_002466115.1| - 0.014 15.2 0.1 4.9 6.8 0.5 2.2 1 1 1 2 2 2 0 AAA ATPase domain G-alpha PF00503.20 gi|219851683|ref|YP_002466115.1| - 0.043 13.0 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MeaB PF03308.16 gi|219851683|ref|YP_002466115.1| - 0.069 12.1 0.0 0.16 10.9 0.0 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|219851683|ref|YP_002466115.1| - 0.082 13.0 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|219851683|ref|YP_002466115.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|219851683|ref|YP_002466115.1| - 0.11 12.9 0.0 0.16 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain CbiQ PF02361.16 gi|219851684|ref|YP_002466116.1| - 4.7e-36 124.5 13.7 4.7e-36 124.5 13.7 1.4 2 0 0 2 2 2 1 Cobalt transport protein DNA_gyraseB PF00204.25 gi|219851686|ref|YP_002466118.1| - 3.9e-60 202.3 0.4 6.6e-60 201.5 0.4 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|219851686|ref|YP_002466118.1| - 3.2e-28 97.7 0.1 6.2e-28 96.8 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|219851686|ref|YP_002466118.1| - 7.4e-19 68.3 0.2 5.1e-18 65.6 0.1 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|219851686|ref|YP_002466118.1| - 6e-18 65.0 0.0 1.6e-17 63.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|219851686|ref|YP_002466118.1| - 0.00039 20.3 0.1 0.00099 18.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|219851687|ref|YP_002466119.1| - 5.9e-155 516.4 0.0 9.3e-155 515.7 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|219851687|ref|YP_002466119.1| - 6.8e-71 233.6 8.7 7.5e-15 54.1 0.6 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller SH3_19 PF18597.1 gi|219851687|ref|YP_002466119.1| - 0.003 17.3 0.3 3.4 7.6 0.0 3.8 5 0 0 5 5 5 2 Myosin X N-terminal SH3 domain UPF0047 PF01894.17 gi|219851688|ref|YP_002466120.1| - 3.3e-30 104.6 0.0 3.8e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 MASE1 PF05231.14 gi|219851689|ref|YP_002466121.1| - 2e-06 27.2 30.1 2.7e-06 26.8 30.1 1.1 1 0 0 1 1 1 1 MASE1 60KD_IMP PF02096.20 gi|219851689|ref|YP_002466121.1| - 0.53 10.2 4.7 1.2 9.0 4.7 1.7 1 1 0 1 1 1 0 60Kd inner membrane protein MFS_1 PF07690.16 gi|219851690|ref|YP_002466122.1| - 4.9e-58 196.8 55.1 2.4e-57 194.5 53.2 2.1 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219851690|ref|YP_002466122.1| - 8.9e-12 44.6 41.7 3.5e-06 26.2 18.4 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|219851690|ref|YP_002466122.1| - 0.00018 20.0 37.0 0.033 12.5 10.8 3.7 2 2 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family Gly-zipper_Omp PF13488.6 gi|219851690|ref|YP_002466122.1| - 1.2 9.1 7.7 7.2 6.7 0.2 2.5 2 0 0 2 2 2 0 Glycine zipper Abhydrolase_1 PF00561.20 gi|219851691|ref|YP_002466123.1| - 2.1e-23 83.3 0.3 1.6e-19 70.6 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|219851691|ref|YP_002466123.1| - 7.7e-15 54.8 0.1 2.1e-14 53.4 0.1 1.6 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|219851691|ref|YP_002466123.1| - 4.8e-08 33.9 0.0 1.1e-07 32.7 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|219851691|ref|YP_002466123.1| - 0.01 14.6 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 0 Ndr family Abhydrolase_4 PF08386.10 gi|219851691|ref|YP_002466123.1| - 0.042 14.0 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein zf-C2H2_10 PF16588.5 gi|219851692|ref|YP_002466124.1| - 0.12 12.2 0.6 0.12 12.2 0.6 2.1 2 0 0 2 2 2 0 C2H2 zinc-finger PAS_4 PF08448.10 gi|219851692|ref|YP_002466124.1| - 0.16 12.3 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 PAS fold MLTR_LBD PF17765.1 gi|219851692|ref|YP_002466124.1| - 0.18 11.9 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain zf-C3HC4 PF00097.25 gi|219851692|ref|YP_002466124.1| - 3.8 7.5 8.8 1.2 9.1 0.2 2.8 2 2 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-Sec23_Sec24 PF04810.15 gi|219851692|ref|YP_002466124.1| - 4.5 7.4 7.7 0.96 9.6 0.7 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger PAS_4 PF08448.10 gi|219851693|ref|YP_002466125.1| - 5.2e-17 62.1 0.1 1.1e-16 61.0 0.1 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|219851693|ref|YP_002466125.1| - 1.4e-15 57.8 0.0 3.8e-15 56.4 0.0 1.7 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|219851693|ref|YP_002466125.1| - 5.6e-11 42.9 0.0 1.1e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|219851693|ref|YP_002466125.1| - 1.5e-06 28.9 0.0 3.5e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|219851693|ref|YP_002466125.1| - 3.3e-06 27.1 0.0 1.3e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|219851693|ref|YP_002466125.1| - 7.7e-06 26.1 0.0 3.4e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|219851693|ref|YP_002466125.1| - 0.0072 16.5 0.1 0.069 13.3 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|219851693|ref|YP_002466125.1| - 0.023 14.7 0.0 0.11 12.6 0.0 2.1 2 0 0 2 2 2 0 PAS domain PAS_10 PF13596.6 gi|219851693|ref|YP_002466125.1| - 0.088 13.4 0.0 0.46 11.1 0.0 2.0 2 0 0 2 2 2 0 PAS domain HATPase_c_5 PF14501.6 gi|219851693|ref|YP_002466125.1| - 0.09 12.7 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 GHKL domain PAS_3 PF08447.12 gi|219851693|ref|YP_002466125.1| - 0.16 12.3 0.2 0.54 10.6 0.2 1.9 1 0 0 1 1 1 0 PAS fold MMPL PF03176.15 gi|219851694|ref|YP_002466126.1| - 6.1e-51 173.3 26.8 1.6e-27 96.3 3.8 2.5 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.19 gi|219851694|ref|YP_002466126.1| - 1.2e-08 33.1 26.9 2.2e-05 22.4 7.4 2.9 1 1 2 3 3 3 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.8 gi|219851694|ref|YP_002466126.1| - 9.6e-07 28.8 6.7 9.6e-07 28.8 6.7 3.7 4 0 0 4 4 4 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|219851694|ref|YP_002466126.1| - 1.6e-06 27.6 9.7 1.6e-06 27.6 9.7 3.3 4 0 0 4 4 4 1 Protein export membrane protein Patched PF02460.18 gi|219851694|ref|YP_002466126.1| - 0.0079 14.3 33.0 0.04 12.0 10.7 2.3 2 0 0 2 2 2 2 Patched family zf-ribbon_3 PF13248.6 gi|219851695|ref|YP_002466127.1| - 0.00064 19.0 2.1 0.0017 17.7 2.1 1.8 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219851695|ref|YP_002466127.1| - 0.75 9.9 6.0 0.62 10.1 2.3 1.7 1 1 1 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|219851695|ref|YP_002466127.1| - 0.97 9.1 5.7 3.5 7.4 0.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|219851695|ref|YP_002466127.1| - 1.2 9.0 4.0 14 5.5 3.9 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|219851695|ref|YP_002466127.1| - 4.5 7.3 5.5 34 4.5 0.9 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.12 gi|219851695|ref|YP_002466127.1| - 5.9 6.5 6.1 39 3.9 6.1 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0147 PF03685.13 gi|219851696|ref|YP_002466128.1| - 2.1e-37 127.0 2.9 2.3e-37 126.9 2.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) DUF4988 PF16378.5 gi|219851696|ref|YP_002466128.1| - 0.014 15.1 0.1 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function UPF0253 PF06786.12 gi|219851696|ref|YP_002466128.1| - 0.086 13.1 0.1 3.8 7.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|219851697|ref|YP_002466129.1| - 7.9e-10 38.7 6.6 1.3e-09 38.0 6.6 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Helicase_C PF00271.31 gi|219851698|ref|YP_002466130.1| - 4.7e-24 84.9 0.0 1.1e-20 74.1 0.1 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|219851698|ref|YP_002466130.1| - 5.4e-21 75.4 0.0 1.1e-20 74.4 0.0 1.6 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.29 gi|219851698|ref|YP_002466130.1| - 6.2e-18 65.2 0.0 3.4e-17 62.8 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|219851698|ref|YP_002466130.1| - 6.3e-18 65.4 0.0 2.4e-16 60.2 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|219851698|ref|YP_002466130.1| - 1.1e-08 35.0 0.0 3.1e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|219851698|ref|YP_002466130.1| - 3.5e-08 33.9 0.0 2e-07 31.5 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_RecD PF05127.14 gi|219851698|ref|YP_002466130.1| - 2.1e-05 24.4 0.0 0.0074 16.2 0.0 3.0 3 0 0 3 3 3 1 Helicase HHH PF00633.23 gi|219851698|ref|YP_002466130.1| - 0.00039 20.1 0.1 0.0013 18.5 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif PhoH PF02562.16 gi|219851698|ref|YP_002466130.1| - 0.0074 15.8 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein Flavi_DEAD PF07652.14 gi|219851698|ref|YP_002466130.1| - 0.016 15.2 0.0 8.8 6.3 0.0 2.7 2 0 0 2 2 2 0 Flavivirus DEAD domain HHH_3 PF12836.7 gi|219851698|ref|YP_002466130.1| - 0.064 13.5 0.1 0.2 11.9 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|219851698|ref|YP_002466130.1| - 0.09 13.2 0.0 0.37 11.2 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix domain HGTP_anticodon PF03129.20 gi|219851699|ref|YP_002466131.1| - 2.6e-22 78.8 0.0 6.3e-22 77.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|219851699|ref|YP_002466131.1| - 4.9e-12 46.2 0.0 1.4e-11 44.7 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HTH_23 PF13384.6 gi|219851700|ref|YP_002466132.1| - 3.1e-05 23.6 0.0 0.0099 15.7 0.0 2.7 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|219851700|ref|YP_002466132.1| - 0.00016 21.4 0.0 0.0028 17.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|219851700|ref|YP_002466132.1| - 0.00079 18.8 0.0 0.0021 17.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_30 PF13556.6 gi|219851700|ref|YP_002466132.1| - 0.0026 17.5 0.0 0.063 13.1 0.0 2.4 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain GerE PF00196.19 gi|219851700|ref|YP_002466132.1| - 0.0028 17.1 0.0 0.084 12.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.20 gi|219851700|ref|YP_002466132.1| - 0.01 16.1 0.0 0.06 13.7 0.0 2.1 2 0 0 2 2 2 0 Transposase Med28 PF11594.8 gi|219851700|ref|YP_002466132.1| - 0.025 14.7 0.3 0.17 12.0 0.1 2.0 2 0 0 2 2 2 0 Mediator complex subunit 28 MerR PF00376.23 gi|219851700|ref|YP_002466132.1| - 0.03 14.1 0.0 0.093 12.5 0.0 1.9 2 0 0 2 2 2 0 MerR family regulatory protein HTH_10 PF04967.12 gi|219851700|ref|YP_002466132.1| - 0.034 13.9 0.0 0.23 11.3 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.6 gi|219851700|ref|YP_002466132.1| - 0.07 12.7 0.0 0.23 11.0 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3071 PF11268.8 gi|219851700|ref|YP_002466132.1| - 0.091 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) LPD22 PF18834.1 gi|219851700|ref|YP_002466132.1| - 0.099 12.9 0.0 0.33 11.2 0.0 1.8 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 HTH_28 PF13518.6 gi|219851700|ref|YP_002466132.1| - 0.12 12.5 0.0 2.2 8.5 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|219851700|ref|YP_002466132.1| - 0.15 11.9 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Lactamase_B_3 PF13483.6 gi|219851701|ref|YP_002466133.1| - 1.8e-24 86.5 0.0 2.5e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|219851701|ref|YP_002466133.1| - 2.8e-20 72.7 0.5 4.5e-20 72.0 0.5 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219851701|ref|YP_002466133.1| - 8.7e-07 29.1 3.3 4.3e-06 26.9 3.3 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peripla_BP_2 PF01497.18 gi|219851701|ref|YP_002466133.1| - 0.071 12.7 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein CBM_15 PF03426.14 gi|219851701|ref|YP_002466133.1| - 0.12 11.9 1.6 0.43 10.1 0.3 2.1 1 1 1 2 2 2 0 Carbohydrate binding domain (family 15) zf-ribbon_3 PF13248.6 gi|219851702|ref|YP_002466134.1| - 9.2e-06 24.9 1.5 1.6e-05 24.1 1.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219851702|ref|YP_002466134.1| - 0.00048 19.8 1.5 0.0008 19.0 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219851702|ref|YP_002466134.1| - 0.0011 19.0 1.0 0.0017 18.3 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon CARDB PF07705.11 gi|219851702|ref|YP_002466134.1| - 0.15 12.3 7.9 0.37 11.1 0.2 3.0 3 0 0 3 3 3 0 CARDB zinc_ribbon_15 PF17032.5 gi|219851702|ref|YP_002466134.1| - 0.36 11.6 1.0 0.57 11.0 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family DUF202 PF02656.15 gi|219851703|ref|YP_002466135.1| - 1.9 9.0 14.5 0.33 11.4 1.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF202) MCPsignal PF00015.21 gi|219851705|ref|YP_002466137.1| - 5.3e-42 143.5 51.0 3.4e-41 140.9 20.8 5.5 3 1 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219851705|ref|YP_002466137.1| - 6.9e-16 58.5 0.0 3.9e-12 46.4 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|219851705|ref|YP_002466137.1| - 2.9e-09 37.1 0.1 4.6e-08 33.2 0.0 3.0 4 0 0 4 4 4 1 PAS domain PAS PF00989.25 gi|219851705|ref|YP_002466137.1| - 1.5e-07 31.4 0.0 0.00099 19.1 0.0 3.1 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|219851705|ref|YP_002466137.1| - 0.00046 20.1 0.0 0.038 14.0 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|219851705|ref|YP_002466137.1| - 0.0069 17.0 0.0 0.67 10.6 0.0 3.9 3 0 0 3 3 3 1 PAS domain AIP3 PF03915.13 gi|219851705|ref|YP_002466137.1| - 0.083 12.0 2.7 0.41 9.7 2.7 2.1 1 1 0 1 1 1 0 Actin interacting protein 3 MLTR_LBD PF17765.1 gi|219851705|ref|YP_002466137.1| - 0.13 12.4 0.0 26 4.9 0.0 3.5 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain DUF948 PF06103.11 gi|219851705|ref|YP_002466137.1| - 0.15 12.3 29.0 0.76 10.1 2.6 7.3 4 1 2 7 7 6 0 Bacterial protein of unknown function (DUF948) CinA_KH PF18146.1 gi|219851705|ref|YP_002466137.1| - 0.15 12.2 2.2 0.27 11.4 0.1 2.6 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain BLOC1_2 PF10046.9 gi|219851705|ref|YP_002466137.1| - 0.59 10.5 17.5 20 5.6 0.2 6.5 4 2 3 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|219851705|ref|YP_002466137.1| - 0.69 10.0 19.6 0.77 9.8 0.8 6.0 4 2 1 5 5 5 0 Protein of unknown function (DUF1664) Ferritin PF00210.24 gi|219851705|ref|YP_002466137.1| - 0.96 9.4 6.8 0.58 10.1 0.3 3.4 4 0 0 4 4 4 0 Ferritin-like domain DASH_Dad4 PF08650.10 gi|219851705|ref|YP_002466137.1| - 1.4 8.9 5.7 3 7.9 0.1 4.1 4 1 0 4 4 4 0 DASH complex subunit Dad4 Syntaxin-6_N PF09177.11 gi|219851705|ref|YP_002466137.1| - 1.7 9.3 7.6 9.6 6.8 0.5 4.2 3 1 1 4 4 3 0 Syntaxin 6, N-terminal Sigma70_ner PF04546.13 gi|219851705|ref|YP_002466137.1| - 2.8 7.8 10.9 2.3 8.0 2.0 3.3 3 0 0 3 3 3 0 Sigma-70, non-essential region Laminin_II PF06009.12 gi|219851705|ref|YP_002466137.1| - 3.2 7.8 24.7 1.1 9.3 3.8 5.2 3 2 1 5 5 5 0 Laminin Domain II CheW PF01584.19 gi|219851706|ref|YP_002466138.1| - 6.3e-29 100.4 0.7 7e-29 100.2 0.7 1.0 1 0 0 1 1 1 1 CheW-like domain Rhodanese PF00581.20 gi|219851706|ref|YP_002466138.1| - 0.14 12.7 0.0 0.29 11.7 0.0 1.4 1 1 0 1 1 1 0 Rhodanese-like domain PAS_9 PF13426.7 gi|219851707|ref|YP_002466139.1| - 1.4e-65 218.1 8.1 4e-11 43.1 0.0 7.7 7 0 0 7 7 7 6 PAS domain PAS PF00989.25 gi|219851707|ref|YP_002466139.1| - 3.5e-49 165.5 6.6 3.1e-11 43.3 0.0 7.6 7 0 0 7 7 7 6 PAS fold PAS_4 PF08448.10 gi|219851707|ref|YP_002466139.1| - 2e-47 160.0 2.0 4.6e-10 39.7 0.0 8.1 8 0 0 8 8 8 6 PAS fold PAS_8 PF13188.7 gi|219851707|ref|YP_002466139.1| - 2.9e-37 126.1 2.7 6e-07 29.3 0.0 6.9 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.12 gi|219851707|ref|YP_002466139.1| - 2e-32 111.3 5.0 5.9e-06 26.5 0.0 8.6 8 1 0 8 8 8 6 PAS fold Response_reg PF00072.24 gi|219851707|ref|YP_002466139.1| - 5.9e-18 65.1 0.0 3.2e-17 62.7 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219851707|ref|YP_002466139.1| - 6.2e-12 46.0 0.4 2.6e-11 44.0 0.4 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|219851707|ref|YP_002466139.1| - 8.3e-05 23.1 0.0 0.4 11.3 0.0 4.7 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.6 gi|219851707|ref|YP_002466139.1| - 0.13 12.1 0.1 0.28 11.0 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|219851707|ref|YP_002466139.1| - 0.63 10.2 15.5 0.74 10.0 0.0 5.7 7 0 0 7 7 7 0 PAS fold tRNA_anti-codon PF01336.25 gi|219851710|ref|YP_002466142.1| - 2e-06 27.7 0.1 4.7e-06 26.5 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|219851710|ref|YP_002466142.1| - 2.8e-05 24.3 0.1 5.6e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|219851710|ref|YP_002466142.1| - 0.00068 19.9 0.2 0.002 18.4 0.2 1.9 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|219851710|ref|YP_002466142.1| - 0.0064 16.7 0.1 0.021 15.0 0.1 2.0 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1707 PF08044.11 gi|219851710|ref|YP_002466142.1| - 0.74 9.9 3.4 23 5.2 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) Ribosomal_L16 PF00252.18 gi|219851711|ref|YP_002466143.1| - 1.5e-33 115.6 0.6 1.8e-33 115.4 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e CRF PF00473.17 gi|219851711|ref|YP_002466143.1| - 0.57 10.3 1.9 0.73 10.0 0.3 2.0 2 0 0 2 2 2 0 Corticotropin-releasing factor family ABC_tran PF00005.27 gi|219851712|ref|YP_002466144.1| - 2.7e-29 102.5 0.0 3.8e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851712|ref|YP_002466144.1| - 1.8e-07 31.3 0.0 0.0036 17.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|219851712|ref|YP_002466144.1| - 4.1e-07 30.5 0.1 7.4e-06 26.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|219851712|ref|YP_002466144.1| - 2e-06 28.1 0.4 0.0001 22.6 0.1 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|219851712|ref|YP_002466144.1| - 3.9e-05 23.6 0.0 7.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|219851712|ref|YP_002466144.1| - 8e-05 22.6 0.0 0.00014 21.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|219851712|ref|YP_002466144.1| - 0.00036 20.9 0.0 0.00055 20.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|219851712|ref|YP_002466144.1| - 0.00084 19.6 0.2 0.0026 18.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|219851712|ref|YP_002466144.1| - 0.0015 18.0 0.0 0.65 9.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219851712|ref|YP_002466144.1| - 0.0022 18.5 0.1 0.0031 18.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|219851712|ref|YP_002466144.1| - 0.0036 17.8 0.1 0.0098 16.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain ATPase_2 PF01637.18 gi|219851712|ref|YP_002466144.1| - 0.0051 16.7 0.0 0.031 14.2 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|219851712|ref|YP_002466144.1| - 0.0069 16.1 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|219851712|ref|YP_002466144.1| - 0.0077 16.2 0.1 0.023 14.6 0.0 1.8 2 0 0 2 2 1 1 NACHT domain AAA_33 PF13671.6 gi|219851712|ref|YP_002466144.1| - 0.014 15.6 0.0 0.032 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|219851712|ref|YP_002466144.1| - 0.015 15.0 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|219851712|ref|YP_002466144.1| - 0.024 14.2 0.1 0.25 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|219851712|ref|YP_002466144.1| - 0.025 14.3 0.5 0.2 11.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 gi|219851712|ref|YP_002466144.1| - 0.029 14.2 0.0 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Deoxynucleoside kinase NTPase_1 PF03266.15 gi|219851712|ref|YP_002466144.1| - 0.046 13.6 0.2 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|219851712|ref|YP_002466144.1| - 0.048 13.7 0.4 0.12 12.4 0.1 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|219851712|ref|YP_002466144.1| - 0.048 12.4 0.3 2.1 7.0 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RNA_helicase PF00910.22 gi|219851712|ref|YP_002466144.1| - 0.06 13.7 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|219851712|ref|YP_002466144.1| - 0.069 12.9 0.1 0.57 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|219851712|ref|YP_002466144.1| - 0.08 12.7 0.1 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|219851712|ref|YP_002466144.1| - 0.082 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|219851712|ref|YP_002466144.1| - 0.087 12.9 0.1 0.35 10.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|219851712|ref|YP_002466144.1| - 0.092 11.5 0.0 0.2 10.4 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein SbcCD_C PF13558.6 gi|219851712|ref|YP_002466144.1| - 0.11 12.7 0.1 0.36 11.1 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|219851712|ref|YP_002466144.1| - 0.18 11.9 0.0 1.2 9.3 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.25 gi|219851712|ref|YP_002466144.1| - 0.21 11.2 0.1 0.23 11.1 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_1 PF00528.22 gi|219851713|ref|YP_002466145.1| - 1.7e-21 76.8 16.8 1.7e-21 76.8 16.8 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|219851714|ref|YP_002466146.1| - 2.7e-18 66.6 0.3 2.4e-09 37.3 0.0 2.3 2 0 0 2 2 2 2 NMT1-like family Retrotran_gag_3 PF14244.6 gi|219851714|ref|YP_002466146.1| - 0.037 13.8 0.1 0.094 12.5 0.1 1.7 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type Lyase_1 PF00206.20 gi|219851715|ref|YP_002466147.1| - 3.5e-54 184.3 0.0 4.7e-54 183.9 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|219851715|ref|YP_002466147.1| - 7.6e-18 65.0 0.1 2.3e-17 63.5 0.1 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.20 gi|219851716|ref|YP_002466148.1| - 2.8e-57 193.4 0.8 8.3e-57 191.8 0.7 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|219851716|ref|YP_002466148.1| - 1.4e-25 89.7 0.1 6.7e-25 87.5 0.0 2.0 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|219851716|ref|YP_002466148.1| - 0.00058 19.1 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 GatD N-terminal domain GatB_N PF02934.15 gi|219851717|ref|YP_002466149.1| - 5.7e-59 199.8 0.0 7.3e-59 199.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|219851717|ref|YP_002466149.1| - 5.3e-14 52.2 0.1 3.3e-13 49.7 0.1 2.2 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.18 gi|219851717|ref|YP_002466149.1| - 1.4e-13 51.0 0.0 3.5e-13 49.7 0.0 1.7 1 0 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|219851717|ref|YP_002466149.1| - 3.2e-05 24.0 0.4 0.00011 22.3 0.1 2.0 2 0 0 2 2 2 1 Yqey-like protein DUF5350 PF17299.2 gi|219851718|ref|YP_002466150.1| - 4e-26 91.3 1.6 6.6e-26 90.6 1.6 1.4 1 0 0 1 1 1 1 Family of unknown function (DUF5350) DUF5548 PF17702.1 gi|219851718|ref|YP_002466150.1| - 0.0017 18.1 0.2 0.0019 17.9 0.2 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5548) GT-D PF08759.11 gi|219851719|ref|YP_002466151.1| - 0.032 13.9 0.0 0.043 13.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase GT-D fold Nitroreductase PF00881.24 gi|219851720|ref|YP_002466152.1| - 2.6e-30 105.7 0.2 3.8e-15 56.3 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|219851720|ref|YP_002466152.1| - 8.5e-09 35.3 0.0 0.00041 20.0 0.0 2.8 2 1 1 3 3 3 2 Putative TM nitroreductase DUF555 PF04475.12 gi|219851721|ref|YP_002466153.1| - 3.3e-47 159.0 1.1 3.7e-47 158.8 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) PfkB PF00294.24 gi|219851722|ref|YP_002466154.1| - 1.2e-51 175.8 0.0 1.4e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Diphthami_syn_2 PF01902.17 gi|219851723|ref|YP_002466155.1| - 4.2e-56 189.9 0.1 4.9e-56 189.7 0.1 1.0 1 0 0 1 1 1 1 Diphthamide synthase DUF2070 PF09843.9 gi|219851724|ref|YP_002466156.1| - 9.5e-200 664.6 7.1 1.1e-199 664.5 7.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DENN PF02141.21 gi|219851724|ref|YP_002466156.1| - 0.047 13.6 0.0 0.47 10.4 0.0 2.3 3 0 0 3 3 3 0 DENN (AEX-3) domain PIG-P PF08510.12 gi|219851724|ref|YP_002466156.1| - 0.34 10.8 1.5 0.96 9.4 0.8 2.2 2 0 0 2 2 2 0 PIG-P Hemerythrin PF01814.23 gi|219851726|ref|YP_002466158.1| - 7.4e-14 52.5 0.9 8.3e-14 52.3 0.9 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain MFS_2 PF13347.6 gi|219851727|ref|YP_002466159.1| - 0.0053 15.4 0.2 0.0069 15.0 0.2 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein PspB PF06667.12 gi|219851727|ref|YP_002466159.1| - 0.052 13.6 0.7 0.095 12.8 0.7 1.4 1 0 0 1 1 1 0 Phage shock protein B DUF4955 PF16315.5 gi|219851727|ref|YP_002466159.1| - 0.085 13.0 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4955) CPP1-like PF11833.8 gi|219851727|ref|YP_002466159.1| - 0.68 9.6 2.4 0.56 9.8 0.9 1.5 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF45 PF01863.17 gi|219851728|ref|YP_002466160.1| - 6.9e-22 78.5 0.1 7.9e-22 78.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|219851728|ref|YP_002466160.1| - 0.022 14.8 0.1 0.031 14.3 0.1 1.3 1 0 0 1 1 1 0 WLM domain SprT-like PF10263.9 gi|219851728|ref|YP_002466160.1| - 0.039 13.8 0.5 0.072 12.9 0.5 1.6 1 1 0 1 1 1 0 SprT-like family SWI2_SNF2 PF18766.1 gi|219851729|ref|YP_002466161.1| - 3.5e-59 200.2 0.0 8.2e-59 199.0 0.0 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|219851729|ref|YP_002466161.1| - 6.9e-24 84.9 0.1 2e-23 83.3 0.1 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|219851729|ref|YP_002466161.1| - 2.3e-19 70.0 0.0 6.9e-19 68.5 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.8 gi|219851729|ref|YP_002466161.1| - 1.4e-05 24.6 2.9 0.0004 19.9 2.9 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF3387) DEAD PF00270.29 gi|219851729|ref|YP_002466161.1| - 0.0018 18.1 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|219851729|ref|YP_002466161.1| - 0.012 14.9 0.1 0.28 10.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AsnC_trans_reg2 PF17805.1 gi|219851729|ref|YP_002466161.1| - 0.2 11.9 0.3 5.2 7.3 0.0 2.7 2 0 0 2 2 2 0 AsnC-like ligand binding domain 7TMR-HDED PF07697.11 gi|219851729|ref|YP_002466161.1| - 0.21 11.7 2.9 0.95 9.5 1.3 2.4 2 0 0 2 2 2 0 7TM-HD extracellular AAA_23 PF13476.6 gi|219851729|ref|YP_002466161.1| - 6.7 7.2 8.9 4.1 7.8 5.7 2.3 1 1 1 2 2 2 0 AAA domain Mrr_cat PF04471.12 gi|219851730|ref|YP_002466162.1| - 4.1e-23 81.6 0.0 6.7e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF4365 PF14280.6 gi|219851730|ref|YP_002466162.1| - 0.0068 16.3 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4365) Methylase_S PF01420.19 gi|219851731|ref|YP_002466163.1| - 2.5e-18 66.9 0.0 3e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Methylase_S PF01420.19 gi|219851732|ref|YP_002466164.1| - 4e-11 43.4 0.0 5e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain SIR2_2 PF13289.6 gi|219851733|ref|YP_002466165.1| - 9.6e-07 29.0 0.0 2.7e-06 27.6 0.0 1.8 1 0 0 1 1 1 1 SIR2-like domain SIR2 PF02146.17 gi|219851733|ref|YP_002466165.1| - 0.0002 21.4 1.4 0.036 14.0 0.0 3.6 2 1 1 3 3 3 1 Sir2 family Nitro_FeMo-Co PF02579.17 gi|219851733|ref|YP_002466165.1| - 0.086 13.2 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor DUF3546 PF12066.8 gi|219851733|ref|YP_002466165.1| - 0.12 12.6 5.1 2 8.6 0.3 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3546) N6_Mtase PF02384.16 gi|219851734|ref|YP_002466166.1| - 1.2e-88 297.4 0.0 1.5e-88 297.1 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|219851734|ref|YP_002466166.1| - 1.7e-32 112.9 0.1 5.9e-32 111.1 0.0 2.0 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|219851734|ref|YP_002466166.1| - 1.1e-06 28.4 0.0 2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|219851734|ref|YP_002466166.1| - 0.015 14.8 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa HicB_lk_antitox PF15919.5 gi|219851736|ref|YP_002466168.1| - 3.3e-12 46.6 0.0 3.5e-12 46.5 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RRP7 PF12923.7 gi|219851736|ref|YP_002466168.1| - 0.046 13.9 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain PHD_like PF12910.7 gi|219851736|ref|YP_002466168.1| - 0.091 12.8 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicA_toxin PF07927.12 gi|219851737|ref|YP_002466169.1| - 8.8e-17 60.9 0.2 1e-16 60.7 0.2 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, RibD_C PF01872.17 gi|219851738|ref|YP_002466170.1| - 1.3e-15 57.8 0.0 1.9e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.19 gi|219851738|ref|YP_002466170.1| - 0.011 15.4 0.1 0.025 14.3 0.1 1.5 1 1 0 1 1 1 0 Dihydrofolate reductase DUF998 PF06197.13 gi|219851739|ref|YP_002466171.1| - 5e-39 133.8 17.4 6.1e-39 133.5 17.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Fumarate_red_C PF02300.17 gi|219851739|ref|YP_002466171.1| - 0.96 9.5 3.2 12 6.0 0.5 2.3 2 0 0 2 2 2 0 Fumarate reductase subunit C TetR_N PF00440.23 gi|219851740|ref|YP_002466172.1| - 4.7e-15 55.1 0.1 8.4e-15 54.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 gi|219851740|ref|YP_002466172.1| - 0.0032 17.5 0.0 0.008 16.2 0.0 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF1492 PF07374.11 gi|219851740|ref|YP_002466172.1| - 0.016 15.3 0.6 0.27 11.4 0.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1492) TetR_C_24 PF17932.1 gi|219851740|ref|YP_002466172.1| - 0.06 13.6 0.1 0.16 12.2 0.1 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|219851740|ref|YP_002466172.1| - 0.09 12.9 0.3 0.19 11.9 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase UBA_2 PF08587.11 gi|219851740|ref|YP_002466172.1| - 0.11 12.7 0.6 2.4 8.3 0.0 2.7 3 0 0 3 3 3 0 Ubiquitin associated domain (UBA) LCM PF04072.14 gi|219851741|ref|YP_002466173.1| - 6.2e-19 68.7 0.0 3.4e-14 53.2 0.0 2.2 2 0 0 2 2 2 2 Leucine carboxyl methyltransferase LCM PF04072.14 gi|219851742|ref|YP_002466174.1| - 7.4e-49 166.2 0.0 1.1e-48 165.7 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Abhydrolase_1 PF00561.20 gi|219851743|ref|YP_002466175.1| - 2e-16 60.4 0.1 2.9e-14 53.4 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|219851743|ref|YP_002466175.1| - 1.9e-12 48.3 0.6 2.3e-12 48.0 0.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219851743|ref|YP_002466175.1| - 1e-11 44.6 1.0 7.4e-10 38.5 1.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|219851743|ref|YP_002466175.1| - 9.9e-08 31.0 0.0 1.7e-07 30.3 0.0 1.3 1 1 0 1 1 1 1 Ndr family Thioesterase PF00975.20 gi|219851743|ref|YP_002466175.1| - 7.7e-06 26.2 0.1 9e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_5 PF12695.7 gi|219851743|ref|YP_002466175.1| - 0.08 12.7 0.0 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|219851743|ref|YP_002466175.1| - 0.12 12.0 0.1 0.4 10.3 0.0 1.8 2 1 0 2 2 2 0 Serine hydrolase (FSH1) ADH_N PF08240.12 gi|219851743|ref|YP_002466175.1| - 0.13 12.2 0.0 17 5.3 0.0 2.3 1 1 1 2 2 2 0 Alcohol dehydrogenase GroES-like domain CiPC PF15800.5 gi|219851743|ref|YP_002466175.1| - 0.17 11.6 0.0 0.22 11.2 0.0 1.1 1 0 0 1 1 1 0 Clock interacting protein circadian Trypan_glycop PF00913.19 gi|219851744|ref|YP_002466176.1| - 0.004 16.5 1.7 0.0041 16.4 1.7 1.1 1 0 0 1 1 1 1 Trypanosome variant surface glycoprotein (A-type) Imm5 PF14423.6 gi|219851744|ref|YP_002466176.1| - 0.016 15.5 0.0 0.019 15.2 0.0 1.1 1 0 0 1 1 1 0 Immunity protein Imm5 DUF1801 PF08818.11 gi|219851745|ref|YP_002466177.1| - 6.7e-14 52.2 0.1 8.9e-14 51.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DU1801) DUF3420 PF11900.8 gi|219851745|ref|YP_002466177.1| - 0.0049 17.0 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3420) Glyoxalase PF00903.25 gi|219851746|ref|YP_002466178.1| - 5.9e-13 49.1 0.0 7.1e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|219851746|ref|YP_002466178.1| - 0.0013 18.9 0.0 0.0018 18.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|219851746|ref|YP_002466178.1| - 0.023 15.5 0.0 0.031 15.1 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|219851746|ref|YP_002466178.1| - 0.03 14.2 0.0 0.31 11.0 0.0 2.1 1 1 0 1 1 1 0 Glyoxalase-like domain DUF1214 PF06742.11 gi|219851749|ref|YP_002466181.1| - 2.2e-35 121.4 0.1 3.1e-35 120.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) Myco_arth_vir_N PF09610.10 gi|219851749|ref|YP_002466181.1| - 1.2 9.3 4.3 2.1 8.5 4.3 1.4 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) DUF1254 PF06863.12 gi|219851750|ref|YP_002466182.1| - 7.2e-37 126.4 0.1 9.1e-37 126.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) DUF1214 PF06742.11 gi|219851751|ref|YP_002466183.1| - 2.7e-33 114.7 0.0 3.5e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) DUF1254 PF06863.12 gi|219851752|ref|YP_002466184.1| - 4.3e-37 127.2 2.8 5.8e-37 126.7 1.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1254) CarbpepA_inh PF02977.15 gi|219851753|ref|YP_002466185.1| - 7.9 6.4 11.3 0.79 9.6 0.5 3.3 3 0 0 3 3 3 0 Carboxypeptidase A inhibitor DUF308 PF03729.13 gi|219851754|ref|YP_002466186.1| - 0.05 13.9 14.3 0.065 13.6 13.7 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF2892 PF11127.8 gi|219851754|ref|YP_002466186.1| - 0.051 13.6 6.8 0.06 13.4 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF3487 PF11990.8 gi|219851754|ref|YP_002466186.1| - 1.1 9.1 7.4 1.2 9.1 7.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) BCLP PF12304.8 gi|219851754|ref|YP_002466186.1| - 1.3 8.5 8.2 1.5 8.3 8.2 1.2 1 0 0 1 1 1 0 Beta-casein like protein DUF4225 PF13988.6 gi|219851754|ref|YP_002466186.1| - 2 7.9 6.3 2.3 7.8 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) DUF2207 PF09972.9 gi|219851754|ref|YP_002466186.1| - 9.1 4.9 9.9 8.7 5.0 9.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2178 PF09946.9 gi|219851756|ref|YP_002466188.1| - 5.2e-15 55.5 7.9 6.5e-15 55.2 7.9 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF1275 PF06912.11 gi|219851756|ref|YP_002466188.1| - 0.009 16.0 5.0 0.013 15.5 5.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) DUF3040 PF11239.8 gi|219851756|ref|YP_002466188.1| - 0.21 11.9 9.0 0.74 10.1 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SPC12 PF06645.13 gi|219851756|ref|YP_002466188.1| - 0.46 10.6 13.2 1.6 8.9 3.1 2.3 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF973 PF06157.11 gi|219851756|ref|YP_002466188.1| - 0.97 8.4 11.4 2 7.4 11.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF973) Mntp PF02659.15 gi|219851756|ref|YP_002466188.1| - 1.8 8.3 10.4 0.15 11.8 2.4 2.2 2 1 0 2 2 2 0 Putative manganese efflux pump Tmemb_55A PF09788.9 gi|219851756|ref|YP_002466188.1| - 2 7.4 4.7 0.55 9.3 0.6 1.8 2 0 0 2 2 2 0 Transmembrane protein 55A HTH_3 PF01381.22 gi|219851757|ref|YP_002466189.1| - 3.1e-11 43.1 0.0 3.3e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|219851757|ref|YP_002466189.1| - 4.3e-11 42.7 0.1 4.9e-11 42.5 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|219851757|ref|YP_002466189.1| - 4.4e-06 26.9 0.0 5.1e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|219851757|ref|YP_002466189.1| - 0.00033 20.4 0.1 0.0004 20.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|219851757|ref|YP_002466189.1| - 0.0021 18.5 0.0 0.0022 18.4 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|219851757|ref|YP_002466189.1| - 0.0031 17.4 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|219851757|ref|YP_002466189.1| - 0.0063 16.0 0.0 0.01 15.3 0.0 1.4 1 1 0 1 1 1 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|219851757|ref|YP_002466189.1| - 0.054 13.4 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Crp_2 PF13545.6 gi|219851757|ref|YP_002466189.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain KORA PF16509.5 gi|219851757|ref|YP_002466189.1| - 0.12 12.7 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_23 PF13384.6 gi|219851757|ref|YP_002466189.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 2 0 0 2 2 2 0 Homeodomain-like domain Gpr1_Fun34_YaaH PF01184.19 gi|219851758|ref|YP_002466190.1| - 6.5e-38 130.4 18.1 8.7e-38 130.0 18.1 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF2070 PF09843.9 gi|219851758|ref|YP_002466190.1| - 3.1 6.0 16.0 3.9 5.6 16.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Methyltransf_31 PF13847.6 gi|219851759|ref|YP_002466191.1| - 2.5e-25 89.1 0.0 3.4e-25 88.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851759|ref|YP_002466191.1| - 2.7e-25 88.9 0.0 4.7e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851759|ref|YP_002466191.1| - 3.6e-24 85.3 0.0 6.4e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851759|ref|YP_002466191.1| - 1.5e-19 70.6 0.0 2.9e-19 69.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851759|ref|YP_002466191.1| - 2.7e-18 66.3 0.0 3.6e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851759|ref|YP_002466191.1| - 5.5e-18 65.2 0.0 7.7e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|219851759|ref|YP_002466191.1| - 1.8e-13 50.8 0.0 4.1e-13 49.6 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|219851759|ref|YP_002466191.1| - 3.3e-09 36.5 0.0 6.6e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|219851759|ref|YP_002466191.1| - 7.1e-09 35.4 0.0 1.3e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|219851759|ref|YP_002466191.1| - 2.4e-08 33.7 0.1 5.3e-08 32.6 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|219851759|ref|YP_002466191.1| - 4.9e-08 32.6 0.0 7.6e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|219851759|ref|YP_002466191.1| - 3.7e-07 29.9 0.0 6.6e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|219851759|ref|YP_002466191.1| - 2.7e-06 26.5 0.0 3.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltr_RsmB-F PF01189.17 gi|219851759|ref|YP_002466191.1| - 4e-06 26.6 0.0 3e-05 23.7 0.0 2.1 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|219851759|ref|YP_002466191.1| - 8.1e-06 25.1 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin N6_N4_Mtase PF01555.18 gi|219851759|ref|YP_002466191.1| - 4.8e-05 23.2 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase GCD14 PF08704.10 gi|219851759|ref|YP_002466191.1| - 0.00018 21.3 0.0 0.00025 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 gi|219851759|ref|YP_002466191.1| - 0.00037 20.2 0.0 0.00054 19.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|219851759|ref|YP_002466191.1| - 0.00049 20.1 0.0 0.00099 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|219851759|ref|YP_002466191.1| - 0.00058 20.9 0.0 0.0011 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|219851759|ref|YP_002466191.1| - 0.00066 18.9 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_8 PF05148.15 gi|219851759|ref|YP_002466191.1| - 0.00085 19.2 0.0 0.057 13.3 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.19 gi|219851759|ref|YP_002466191.1| - 0.0031 17.6 0.0 0.005 17.0 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|219851759|ref|YP_002466191.1| - 0.0038 16.3 0.0 0.014 14.5 0.0 1.8 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|219851759|ref|YP_002466191.1| - 0.0048 16.8 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TrkA_N PF02254.18 gi|219851759|ref|YP_002466191.1| - 0.046 14.0 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_15 PF09445.10 gi|219851759|ref|YP_002466191.1| - 0.05 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|219851759|ref|YP_002466191.1| - 0.093 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Pox_MCEL PF03291.16 gi|219851759|ref|YP_002466191.1| - 0.11 11.6 0.0 0.68 9.0 0.0 2.0 1 1 0 1 1 1 0 mRNA capping enzyme N2227 PF07942.12 gi|219851759|ref|YP_002466191.1| - 0.12 11.6 0.2 1.1 8.4 0.0 2.0 2 0 0 2 2 2 0 N2227-like protein AviRa PF11599.8 gi|219851759|ref|YP_002466191.1| - 0.12 11.8 0.0 0.27 10.6 0.0 1.6 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_PK PF05891.12 gi|219851759|ref|YP_002466191.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase ABC2_membrane PF01061.24 gi|219851760|ref|YP_002466192.1| - 7.5e-41 139.8 20.7 7.5e-41 139.8 20.7 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219851760|ref|YP_002466192.1| - 7.3e-16 58.2 26.2 7.3e-16 58.2 26.2 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|219851760|ref|YP_002466192.1| - 4.9e-07 29.3 15.9 4.9e-07 29.3 15.9 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein DPM3 PF08285.11 gi|219851760|ref|YP_002466192.1| - 0.14 12.4 1.0 19 5.5 0.4 2.7 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) ABC_tran PF00005.27 gi|219851761|ref|YP_002466193.1| - 1.9e-30 106.1 0.0 3.4e-30 105.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851761|ref|YP_002466193.1| - 6e-10 39.4 4.0 2e-06 27.9 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219851761|ref|YP_002466193.1| - 8.4e-09 36.0 0.0 2e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|219851761|ref|YP_002466193.1| - 0.00017 22.1 0.1 0.00066 20.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|219851761|ref|YP_002466193.1| - 0.00022 20.9 0.1 0.00039 20.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|219851761|ref|YP_002466193.1| - 0.0011 18.8 0.1 0.58 9.8 0.1 2.3 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|219851761|ref|YP_002466193.1| - 0.0024 17.3 0.1 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|219851761|ref|YP_002466193.1| - 0.042 13.7 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|219851761|ref|YP_002466193.1| - 0.098 12.9 0.1 0.65 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|219851761|ref|YP_002466193.1| - 0.12 12.8 0.0 1.4 9.3 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PK_C PF02887.16 gi|219851762|ref|YP_002466194.1| - 4.5e-06 26.9 0.2 6.1e-06 26.5 0.2 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PALP PF00291.25 gi|219851762|ref|YP_002466194.1| - 0.0059 16.1 0.4 0.012 15.0 0.0 1.6 1 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme PGM_PMM_II PF02879.16 gi|219851762|ref|YP_002466194.1| - 0.052 14.2 0.0 0.17 12.6 0.0 1.7 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF2963 PF11178.8 gi|219851762|ref|YP_002466194.1| - 0.17 11.6 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) Methyltransf_11 PF08241.12 gi|219851763|ref|YP_002466195.1| - 8.1e-21 74.5 0.0 1.3e-20 73.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851763|ref|YP_002466195.1| - 1.4e-19 70.5 0.0 2.5e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851763|ref|YP_002466195.1| - 1.8e-18 66.8 0.0 2.6e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851763|ref|YP_002466195.1| - 1.3e-16 60.9 0.0 1.7e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851763|ref|YP_002466195.1| - 1.6e-15 57.6 0.0 2.8e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851763|ref|YP_002466195.1| - 2.3e-10 40.2 0.0 3.5e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|219851763|ref|YP_002466195.1| - 2.1e-08 33.9 0.0 3.1e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|219851763|ref|YP_002466195.1| - 2.4e-07 30.5 0.0 3.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|219851763|ref|YP_002466195.1| - 3.5e-06 26.9 0.0 5.2e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|219851763|ref|YP_002466195.1| - 3.6e-06 26.5 0.0 6.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 gi|219851763|ref|YP_002466195.1| - 1e-05 24.4 0.0 0.0023 16.6 0.0 2.1 1 1 0 2 2 2 2 Putative S-adenosyl-L-methionine-dependent methyltransferase Fibrillarin PF01269.17 gi|219851763|ref|YP_002466195.1| - 0.00012 21.3 0.0 0.0002 20.6 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|219851763|ref|YP_002466195.1| - 0.00079 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_9 PF08003.11 gi|219851763|ref|YP_002466195.1| - 0.0079 15.1 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) GCD14 PF08704.10 gi|219851763|ref|YP_002466195.1| - 0.018 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DOT1 PF08123.13 gi|219851763|ref|YP_002466195.1| - 0.019 14.5 0.0 0.043 13.4 0.0 1.6 1 1 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_32 PF13679.6 gi|219851763|ref|YP_002466195.1| - 0.027 14.4 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|219851763|ref|YP_002466195.1| - 0.036 13.3 0.0 0.074 12.3 0.0 1.3 1 1 0 1 1 1 0 O-methyltransferase domain HhH-GPD PF00730.25 gi|219851763|ref|YP_002466195.1| - 0.046 14.2 0.0 0.25 11.8 0.0 2.1 1 1 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein FtsJ PF01728.19 gi|219851763|ref|YP_002466195.1| - 0.05 13.7 0.0 0.16 12.1 0.0 1.9 2 1 0 2 2 2 0 FtsJ-like methyltransferase PrmA PF06325.13 gi|219851763|ref|YP_002466195.1| - 0.073 12.4 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) N6_N4_Mtase PF01555.18 gi|219851763|ref|YP_002466195.1| - 0.079 12.7 0.0 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Methyltransf_8 PF05148.15 gi|219851763|ref|YP_002466195.1| - 0.2 11.5 0.0 2.8 7.8 0.0 2.1 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_11 PF08241.12 gi|219851764|ref|YP_002466196.1| - 3e-21 75.9 0.0 6.9e-21 74.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219851764|ref|YP_002466196.1| - 2.3e-20 73.0 0.0 3.2e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851764|ref|YP_002466196.1| - 9.7e-20 71.1 0.0 2.5e-19 69.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851764|ref|YP_002466196.1| - 3.5e-19 69.2 0.0 4.5e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851764|ref|YP_002466196.1| - 2.5e-17 63.4 0.0 7.2e-17 62.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851764|ref|YP_002466196.1| - 3.9e-13 49.3 0.0 7.7e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|219851764|ref|YP_002466196.1| - 2.1e-09 37.2 0.0 3.5e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|219851764|ref|YP_002466196.1| - 3.1e-08 33.3 0.0 4.6e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|219851764|ref|YP_002466196.1| - 2.1e-07 30.6 0.0 3.6e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|219851764|ref|YP_002466196.1| - 1.7e-05 24.7 0.0 2.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|219851764|ref|YP_002466196.1| - 0.00014 21.6 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|219851764|ref|YP_002466196.1| - 0.0036 15.9 0.0 0.053 12.1 0.0 1.7 1 1 1 2 2 2 2 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_PK PF05891.12 gi|219851764|ref|YP_002466196.1| - 0.0044 16.6 0.0 0.0064 16.0 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase DOT1 PF08123.13 gi|219851764|ref|YP_002466196.1| - 0.0096 15.5 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_9 PF08003.11 gi|219851764|ref|YP_002466196.1| - 0.012 14.6 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|219851764|ref|YP_002466196.1| - 0.045 13.2 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MFS_1 PF07690.16 gi|219851765|ref|YP_002466197.1| - 2.6e-27 95.7 52.7 5.3e-15 55.2 30.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|219851765|ref|YP_002466197.1| - 1.4e-07 30.7 35.4 0.00011 21.2 15.1 2.0 1 1 1 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|219851765|ref|YP_002466197.1| - 4.1e-06 25.4 4.6 4.1e-06 25.4 4.6 3.5 2 1 2 4 4 4 1 Organic Anion Transporter Polypeptide (OATP) family ABC_tran PF00005.27 gi|219851766|ref|YP_002466198.1| - 3.1e-31 108.7 0.0 5e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851766|ref|YP_002466198.1| - 4e-12 46.6 0.1 2.3e-05 24.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219851766|ref|YP_002466198.1| - 5.8e-07 29.2 0.1 0.0054 16.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219851766|ref|YP_002466198.1| - 0.00019 21.1 0.0 0.00041 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|219851766|ref|YP_002466198.1| - 0.00087 19.1 0.0 0.084 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|219851766|ref|YP_002466198.1| - 0.002 18.6 0.6 0.024 15.1 0.6 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|219851766|ref|YP_002466198.1| - 0.0025 18.1 0.3 0.0078 16.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|219851766|ref|YP_002466198.1| - 0.0037 17.2 0.1 0.0083 16.0 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase Rad17 PF03215.15 gi|219851766|ref|YP_002466198.1| - 0.0038 17.2 0.0 0.0076 16.2 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|219851766|ref|YP_002466198.1| - 0.0042 17.5 0.1 0.0076 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|219851766|ref|YP_002466198.1| - 0.0097 16.4 0.5 0.017 15.6 0.5 1.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|219851766|ref|YP_002466198.1| - 0.012 15.5 0.8 0.049 13.5 0.0 2.1 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|219851766|ref|YP_002466198.1| - 0.013 15.1 0.0 0.33 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|219851766|ref|YP_002466198.1| - 0.014 15.5 0.2 0.68 10.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|219851766|ref|YP_002466198.1| - 0.061 13.0 1.0 0.51 10.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain Whib PF02467.16 gi|219851766|ref|YP_002466198.1| - 0.099 13.2 0.3 0.22 12.2 0.3 1.5 1 0 0 1 1 1 0 Transcription factor WhiB RNA_helicase PF00910.22 gi|219851766|ref|YP_002466198.1| - 0.21 12.0 0.0 0.53 10.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Methyltransf_25 PF13649.6 gi|219851767|ref|YP_002466199.1| - 1.2e-10 42.0 0.0 2.1e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851767|ref|YP_002466199.1| - 7.3e-10 39.5 0.0 1.3e-09 38.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851767|ref|YP_002466199.1| - 3.6e-08 33.9 0.0 5.5e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851767|ref|YP_002466199.1| - 5.7e-07 29.1 0.0 7.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|219851767|ref|YP_002466199.1| - 6.8e-07 29.2 0.0 8.9e-07 28.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851767|ref|YP_002466199.1| - 3e-05 23.9 0.0 0.00011 22.1 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|219851767|ref|YP_002466199.1| - 0.038 13.9 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain DUF3419 PF11899.8 gi|219851767|ref|YP_002466199.1| - 0.041 13.1 0.0 0.053 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Methyltransf_28 PF02636.17 gi|219851767|ref|YP_002466199.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase P-mevalo_kinase PF04275.14 gi|219851767|ref|YP_002466199.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Phosphomevalonate kinase Methyltransf_33 PF10017.9 gi|219851767|ref|YP_002466199.1| - 0.21 10.7 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent NMT1 PF09084.11 gi|219851768|ref|YP_002466200.1| - 4.4e-26 92.2 0.4 8.6e-26 91.2 0.2 1.5 2 0 0 2 2 2 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|219851768|ref|YP_002466200.1| - 2.4e-14 53.7 0.0 3.9e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|219851768|ref|YP_002466200.1| - 4.1e-05 23.1 0.1 6.8e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 gi|219851768|ref|YP_002466200.1| - 0.00085 18.8 0.1 0.0014 18.1 0.1 1.4 1 0 0 1 1 1 1 NMT1-like family DUF4834 PF16118.5 gi|219851768|ref|YP_002466200.1| - 0.043 14.8 0.4 0.08 13.9 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) HGD-D PF06050.13 gi|219851769|ref|YP_002466201.1| - 2.1e-28 100.0 0.0 3.1e-28 99.5 0.0 1.3 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Methyltransf_11 PF08241.12 gi|219851770|ref|YP_002466202.1| - 7.9e-21 74.5 0.0 1.4e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851770|ref|YP_002466202.1| - 4.2e-20 72.2 0.0 7.9e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219851770|ref|YP_002466202.1| - 1.7e-18 66.8 0.0 4.1e-18 65.6 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|219851770|ref|YP_002466202.1| - 3.6e-18 65.8 0.0 5.5e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851770|ref|YP_002466202.1| - 3.7e-16 59.7 0.0 6.3e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851770|ref|YP_002466202.1| - 1e-14 54.7 0.0 1.4e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219851770|ref|YP_002466202.1| - 7.2e-10 39.0 0.0 1.2e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|219851770|ref|YP_002466202.1| - 1.4e-05 24.7 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|219851770|ref|YP_002466202.1| - 1.9e-05 24.1 0.0 2.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|219851770|ref|YP_002466202.1| - 0.00049 19.6 0.0 0.0011 18.4 0.0 1.7 1 1 0 1 1 1 1 Putative methyltransferase GCD14 PF08704.10 gi|219851770|ref|YP_002466202.1| - 0.00089 19.0 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_3 PF01596.17 gi|219851770|ref|YP_002466202.1| - 0.0015 17.7 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_2 PF00891.18 gi|219851770|ref|YP_002466202.1| - 0.0019 17.5 0.0 0.0032 16.8 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain GidB PF02527.15 gi|219851770|ref|YP_002466202.1| - 0.0022 17.4 0.0 0.0055 16.1 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_8 PF05148.15 gi|219851770|ref|YP_002466202.1| - 0.005 16.7 0.0 0.12 12.2 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase PrmA PF06325.13 gi|219851770|ref|YP_002466202.1| - 0.0061 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.17 gi|219851770|ref|YP_002466202.1| - 0.008 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|219851770|ref|YP_002466202.1| - 0.014 15.1 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Crinivirus_P26 PF07416.11 gi|219851770|ref|YP_002466202.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Crinivirus P26 protein HGD-D PF06050.13 gi|219851771|ref|YP_002466203.1| - 1.3e-28 100.7 0.0 1.8e-28 100.3 0.0 1.2 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component YvrJ PF12841.7 gi|219851771|ref|YP_002466203.1| - 0.084 12.4 1.5 2 8.0 0.1 2.6 2 0 0 2 2 2 0 YvrJ protein family TusA PF01206.17 gi|219851772|ref|YP_002466204.1| - 2.4e-20 72.1 0.0 2.7e-20 72.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2674 PF10879.8 gi|219851772|ref|YP_002466204.1| - 0.0026 17.3 0.0 0.0061 16.1 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2674) MazE_antitoxin PF04014.18 gi|219851772|ref|YP_002466204.1| - 0.062 13.2 0.8 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF2249 PF10006.9 gi|219851772|ref|YP_002466204.1| - 0.095 12.6 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) NIR_SIR PF01077.22 gi|219851773|ref|YP_002466205.1| - 4.4e-31 107.5 0.0 8.8e-31 106.6 0.0 1.4 1 1 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|219851773|ref|YP_002466205.1| - 1e-20 73.3 0.2 1.7e-20 72.6 0.2 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|219851773|ref|YP_002466205.1| - 5.7e-09 35.4 11.3 1.9e-05 24.3 4.1 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851773|ref|YP_002466205.1| - 1.6e-07 31.8 8.6 1.6e-07 31.8 8.6 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219851773|ref|YP_002466205.1| - 1.7e-07 31.3 22.3 1.6e-06 28.1 10.2 2.4 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851773|ref|YP_002466205.1| - 3.4e-07 30.6 2.9 0.0072 16.8 0.0 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219851773|ref|YP_002466205.1| - 3.8e-06 26.9 22.2 0.00016 21.7 12.4 3.1 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851773|ref|YP_002466205.1| - 4.1e-06 26.8 10.7 0.0033 17.5 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851773|ref|YP_002466205.1| - 1.2e-05 25.1 10.8 7.9e-05 22.5 1.9 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851773|ref|YP_002466205.1| - 2e-05 24.5 14.6 0.00084 19.3 5.6 3.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219851773|ref|YP_002466205.1| - 9.3e-05 23.3 16.1 0.0002 22.2 2.0 3.2 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219851773|ref|YP_002466205.1| - 0.00013 22.2 11.1 0.0013 19.1 1.3 2.9 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219851773|ref|YP_002466205.1| - 0.00099 19.3 9.0 0.00099 19.3 9.0 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219851773|ref|YP_002466205.1| - 0.004 17.7 12.8 0.99 10.0 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|219851773|ref|YP_002466205.1| - 0.011 16.6 7.6 0.15 13.0 0.5 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851773|ref|YP_002466205.1| - 0.024 15.6 4.7 0.024 15.6 4.7 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219851773|ref|YP_002466205.1| - 0.04 14.5 14.7 0.58 10.7 2.8 2.7 1 1 3 4 4 4 0 4Fe-4S dicluster domain PMBR PF09373.10 gi|219851773|ref|YP_002466205.1| - 0.22 11.8 0.6 0.54 10.5 0.6 1.6 1 0 0 1 1 1 0 Pseudomurein-binding repeat Prok-JAB PF14464.6 gi|219851774|ref|YP_002466206.1| - 6.8e-23 80.7 0.0 8.1e-23 80.4 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|219851774|ref|YP_002466206.1| - 8.6e-05 22.5 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.15 gi|219851774|ref|YP_002466206.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain ThiF PF00899.21 gi|219851775|ref|YP_002466207.1| - 1.1e-65 221.4 0.0 1.4e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|219851775|ref|YP_002466207.1| - 0.0031 17.6 0.2 0.017 15.2 0.0 2.0 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|219851775|ref|YP_002466207.1| - 0.0087 16.3 0.2 0.029 14.6 0.2 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|219851775|ref|YP_002466207.1| - 0.0089 15.3 0.6 0.012 14.8 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|219851775|ref|YP_002466207.1| - 0.015 14.9 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|219851775|ref|YP_002466207.1| - 0.02 14.5 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|219851775|ref|YP_002466207.1| - 0.098 12.2 2.7 0.2 11.2 2.7 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Ldh_1_N PF00056.23 gi|219851775|ref|YP_002466207.1| - 0.22 11.6 0.8 0.44 10.6 0.7 1.6 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Cys_Met_Meta_PP PF01053.20 gi|219851776|ref|YP_002466208.1| - 4.8e-115 384.1 0.0 5.5e-115 383.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|219851776|ref|YP_002466208.1| - 6e-10 38.8 0.0 1e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219851776|ref|YP_002466208.1| - 9.7e-09 35.0 0.5 1.5e-06 27.8 0.3 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|219851776|ref|YP_002466208.1| - 1.7e-06 27.2 0.0 1.6e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V ThiS PF02597.20 gi|219851777|ref|YP_002466209.1| - 3.6e-10 40.4 0.3 4e-10 40.2 0.3 1.0 1 0 0 1 1 1 1 ThiS family NMT1 PF09084.11 gi|219851778|ref|YP_002466210.1| - 7e-29 101.3 2.1 9.3e-29 100.9 2.1 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|219851778|ref|YP_002466210.1| - 4.6e-18 65.8 0.9 1.1e-17 64.6 0.9 1.6 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|219851778|ref|YP_002466210.1| - 1.5e-06 27.8 0.6 3.9e-06 26.5 0.4 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 gi|219851778|ref|YP_002466210.1| - 3.9e-06 26.5 0.4 6.8e-06 25.7 0.4 1.4 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|219851778|ref|YP_002466210.1| - 2.8e-05 23.8 0.4 4.5e-05 23.2 0.4 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF3834 PF12916.7 gi|219851778|ref|YP_002466210.1| - 0.043 13.1 0.1 0.098 11.9 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3834) BPD_transp_1 PF00528.22 gi|219851779|ref|YP_002466211.1| - 1.3e-23 83.7 10.8 1.3e-23 83.7 10.8 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HGD-D PF06050.13 gi|219851780|ref|YP_002466212.1| - 1.1e-27 97.6 0.0 1.5e-27 97.2 0.0 1.2 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component HGD-D PF06050.13 gi|219851781|ref|YP_002466213.1| - 4.5e-65 220.5 0.0 5.1e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component BcrAD_BadFG PF01869.20 gi|219851782|ref|YP_002466214.1| - 2e-63 214.4 0.8 2.3e-63 214.2 0.8 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.16 gi|219851782|ref|YP_002466214.1| - 0.011 15.5 0.1 0.045 13.5 0.0 1.9 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain tRNA-Thr_ED PF08915.11 gi|219851783|ref|YP_002466215.1| - 1.5e-41 141.7 0.1 1.6e-41 141.6 0.1 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase NAD_binding_10 PF13460.6 gi|219851783|ref|YP_002466215.1| - 0.0012 18.7 0.0 0.0015 18.5 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding ATPase PF06745.13 gi|219851783|ref|YP_002466215.1| - 0.0043 16.4 0.5 0.0053 16.1 0.5 1.1 1 0 0 1 1 1 1 KaiC Phage_connector PF05352.12 gi|219851783|ref|YP_002466215.1| - 0.043 13.3 0.2 0.052 13.0 0.2 1.2 1 0 0 1 1 1 0 Phage Connector (GP10) DUF2362 PF10154.9 gi|219851784|ref|YP_002466216.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) NAD_synthase PF02540.17 gi|219851785|ref|YP_002466217.1| - 1.2e-06 27.8 0.0 1.9e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|219851785|ref|YP_002466217.1| - 0.002 17.9 0.0 0.052 13.3 0.0 2.2 2 0 0 2 2 2 1 PP-loop family PAPS_reduct PF01507.19 gi|219851785|ref|YP_002466217.1| - 0.031 14.3 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|219851785|ref|YP_002466217.1| - 0.051 12.4 0.0 2.6 6.7 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase QueC PF06508.13 gi|219851785|ref|YP_002466217.1| - 0.11 12.0 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF1382 PF07131.11 gi|219851785|ref|YP_002466217.1| - 0.15 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) HTH_3 PF01381.22 gi|219851786|ref|YP_002466218.1| - 6.5e-05 22.9 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|219851786|ref|YP_002466218.1| - 0.0008 19.5 0.1 0.0015 18.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|219851786|ref|YP_002466218.1| - 0.0018 18.1 0.1 0.0041 16.9 0.0 1.8 1 1 1 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|219851786|ref|YP_002466218.1| - 0.0026 17.5 0.4 0.005 16.6 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_1 PF00126.27 gi|219851786|ref|YP_002466218.1| - 0.0065 16.4 0.1 0.022 14.7 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4_2 PF08281.12 gi|219851786|ref|YP_002466218.1| - 0.0069 16.0 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Cro PF09048.10 gi|219851786|ref|YP_002466218.1| - 0.0084 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Cro P22_Cro PF14549.6 gi|219851786|ref|YP_002466218.1| - 0.0089 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_Tnp_ISL3 PF13542.6 gi|219851786|ref|YP_002466218.1| - 0.015 14.7 0.1 0.035 13.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|219851786|ref|YP_002466218.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|219851786|ref|YP_002466218.1| - 0.018 15.1 0.1 0.073 13.1 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_31 PF13560.6 gi|219851786|ref|YP_002466218.1| - 0.022 15.1 0.1 0.04 14.3 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1284 PF06935.11 gi|219851786|ref|YP_002466218.1| - 0.031 14.7 0.1 0.049 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1284) MarR_2 PF12802.7 gi|219851786|ref|YP_002466218.1| - 0.034 14.0 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family Zea_mays_MuDR PF05928.11 gi|219851786|ref|YP_002466218.1| - 0.061 13.0 0.2 0.077 12.6 0.2 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) Sigma70_r4 PF04545.16 gi|219851786|ref|YP_002466218.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|219851786|ref|YP_002466218.1| - 0.085 12.8 0.0 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain LepB_N PF18640.1 gi|219851786|ref|YP_002466218.1| - 0.1 12.2 0.1 0.16 11.6 0.1 1.2 1 1 0 1 1 1 0 LepB N-terminal domain HTH_5 PF01022.20 gi|219851786|ref|YP_002466218.1| - 0.1 12.4 0.1 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|219851786|ref|YP_002466218.1| - 0.14 12.2 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Aminotran_1_2 PF00155.21 gi|219851787|ref|YP_002466219.1| - 1.7e-66 224.9 0.0 2e-66 224.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219851787|ref|YP_002466219.1| - 2.6e-07 30.3 0.0 3.6e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219851787|ref|YP_002466219.1| - 1.5e-05 23.8 0.0 2e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|219851787|ref|YP_002466219.1| - 0.0039 16.2 0.0 0.0068 15.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219851787|ref|YP_002466219.1| - 0.0085 15.4 0.0 0.02 14.2 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|219851787|ref|YP_002466219.1| - 0.03 13.1 0.0 0.04 12.6 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain HTH_3 PF01381.22 gi|219851788|ref|YP_002466220.1| - 4e-09 36.4 0.0 7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|219851788|ref|YP_002466220.1| - 3.4e-06 27.4 0.0 6.2e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_psq PF05225.16 gi|219851788|ref|YP_002466220.1| - 0.00068 19.3 0.0 0.0024 17.5 0.0 1.9 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_19 PF12844.7 gi|219851788|ref|YP_002466220.1| - 0.0018 18.3 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|219851788|ref|YP_002466220.1| - 0.006 16.9 0.0 0.0095 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|219851788|ref|YP_002466220.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_17 PF12728.7 gi|219851788|ref|YP_002466220.1| - 0.016 15.4 0.0 0.031 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|219851788|ref|YP_002466220.1| - 0.017 14.9 0.1 0.08 12.7 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein HTH_7 PF02796.15 gi|219851788|ref|YP_002466220.1| - 0.019 15.0 0.1 0.071 13.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_5 PF01022.20 gi|219851788|ref|YP_002466220.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|219851788|ref|YP_002466220.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain ArsB PF02040.15 gi|219851788|ref|YP_002466220.1| - 0.05 12.9 0.3 0.067 12.5 0.3 1.1 1 0 0 1 1 1 0 Arsenical pump membrane protein HTH_24 PF13412.6 gi|219851788|ref|YP_002466220.1| - 0.12 11.9 0.0 0.34 10.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NMT1_2 PF13379.6 gi|219851789|ref|YP_002466221.1| - 3.2e-14 53.2 0.0 4e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|219851789|ref|YP_002466221.1| - 7.2e-09 35.9 0.0 2e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.7 gi|219851789|ref|YP_002466221.1| - 0.004 16.4 0.0 0.035 13.3 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3834) Cys_Met_Meta_PP PF01053.20 gi|219851790|ref|YP_002466222.1| - 2.9e-152 506.6 0.0 3.3e-152 506.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|219851790|ref|YP_002466222.1| - 5.6e-07 29.2 0.0 1.8e-06 27.6 0.0 1.8 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|219851790|ref|YP_002466222.1| - 5.6e-06 25.5 0.0 2.2e-05 23.6 0.0 1.9 2 1 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|219851790|ref|YP_002466222.1| - 8.8e-06 25.1 0.0 1.7e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|219851790|ref|YP_002466222.1| - 4.4e-05 22.9 0.0 0.00011 21.6 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase PALP PF00291.25 gi|219851791|ref|YP_002466223.1| - 9.6e-68 228.7 0.0 1.1e-67 228.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1e PF01406.19 gi|219851792|ref|YP_002466224.1| - 4e-111 371.2 0.0 5.8e-111 370.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|219851792|ref|YP_002466224.1| - 2.4e-19 69.4 0.2 4.8e-09 35.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|219851792|ref|YP_002466224.1| - 2e-09 36.3 0.0 5e-07 28.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|219851792|ref|YP_002466224.1| - 1.5e-06 27.4 0.0 8.9e-06 24.9 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|219851792|ref|YP_002466224.1| - 7.5e-05 23.1 5.0 0.0015 19.0 2.7 3.0 2 1 0 2 2 2 1 DALR domain tRNA-synt_1b PF00579.25 gi|219851792|ref|YP_002466224.1| - 0.17 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) DUF1890 PF09001.11 gi|219851793|ref|YP_002466225.1| - 4.9e-55 185.7 0.4 5.5e-55 185.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) tRNA-Thr_ED PF08915.11 gi|219851794|ref|YP_002466226.1| - 4.5e-48 162.8 0.0 5.5e-48 162.5 0.0 1.1 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase BIR PF00653.21 gi|219851794|ref|YP_002466226.1| - 0.023 15.3 1.0 5.3 7.8 0.1 2.2 2 0 0 2 2 2 0 Inhibitor of Apoptosis domain WW_1 PF18507.1 gi|219851794|ref|YP_002466226.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 WW domain Abhydrolase_1 PF00561.20 gi|219851795|ref|YP_002466227.1| - 6.4e-31 107.9 0.3 8.8e-31 107.5 0.3 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|219851795|ref|YP_002466227.1| - 1.3e-24 86.3 3.2 1.6e-11 44.5 0.1 2.8 3 0 0 3 3 3 2 CBS domain Hydrolase_4 PF12146.8 gi|219851795|ref|YP_002466227.1| - 0.007 15.7 0.1 0.11 11.8 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|219851795|ref|YP_002466227.1| - 0.024 15.2 0.0 0.035 14.7 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family Esterase PF00756.20 gi|219851795|ref|YP_002466227.1| - 0.031 13.9 0.1 0.05 13.2 0.1 1.2 1 0 0 1 1 1 0 Putative esterase Cys_Met_Meta_PP PF01053.20 gi|219851796|ref|YP_002466228.1| - 1.6e-141 471.3 0.0 1.8e-141 471.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|219851796|ref|YP_002466228.1| - 4e-10 39.5 0.0 5.8e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|219851796|ref|YP_002466228.1| - 4.9e-06 25.7 0.0 7.9e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|219851796|ref|YP_002466228.1| - 0.018 13.6 0.4 0.69 8.4 0.1 2.2 2 0 0 2 2 2 0 Methionine gamma-lyase Beta_elim_lyase PF01212.21 gi|219851796|ref|YP_002466228.1| - 0.12 11.6 0.0 1.4 8.2 0.0 2.2 1 1 0 1 1 1 0 Beta-eliminating lyase SepSecS PF05889.13 gi|219851796|ref|YP_002466228.1| - 0.13 10.9 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS SepSecS PF05889.13 gi|219851797|ref|YP_002466229.1| - 1.6e-17 63.3 0.0 3.3e-17 62.3 0.0 1.4 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|219851797|ref|YP_002466229.1| - 5.4e-15 55.2 0.0 8.4e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|219851797|ref|YP_002466229.1| - 0.00013 21.3 0.1 0.00022 20.5 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|219851797|ref|YP_002466229.1| - 0.0012 18.1 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase MerR-DNA-bind PF09278.11 gi|219851797|ref|YP_002466229.1| - 0.18 12.4 0.2 0.41 11.2 0.2 1.5 1 0 0 1 1 1 0 MerR, DNA binding Radical_SAM PF04055.21 gi|219851798|ref|YP_002466230.1| - 7.3e-10 39.5 0.0 1.1e-09 38.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily NeuB PF03102.14 gi|219851798|ref|YP_002466230.1| - 0.21 11.0 0.0 0.42 10.0 0.0 1.5 1 0 0 1 1 1 0 NeuB family Response_reg PF00072.24 gi|219851800|ref|YP_002466232.1| - 2.2e-20 72.9 0.0 5.3e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|219851800|ref|YP_002466232.1| - 3.9e-14 53.1 0.8 8.8e-14 52.0 0.2 1.9 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|219851800|ref|YP_002466232.1| - 1.8e-10 41.3 0.1 1.2e-09 38.7 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|219851800|ref|YP_002466232.1| - 2e-09 38.2 0.0 4.3e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|219851800|ref|YP_002466232.1| - 9.7e-07 29.2 0.0 2.5e-06 27.8 0.0 1.8 1 1 0 1 1 1 1 GAF domain Autoind_bind PF03472.15 gi|219851800|ref|YP_002466232.1| - 0.098 12.1 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Autoinducer binding domain Fibin PF15819.5 gi|219851800|ref|YP_002466232.1| - 0.12 12.1 0.5 0.28 10.9 0.1 1.8 2 0 0 2 2 2 0 Fin bud initiation factor homologue SurE PF01975.17 gi|219851802|ref|YP_002466234.1| - 0.015 15.1 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Survival protein SurE SurE PF01975.17 gi|219851803|ref|YP_002466235.1| - 0.02 14.7 0.0 0.023 14.5 0.0 1.1 1 0 0 1 1 1 0 Survival protein SurE HATPase_c PF02518.26 gi|219851805|ref|YP_002466237.1| - 1e-09 38.9 0.2 1.7e-09 38.2 0.2 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|219851805|ref|YP_002466237.1| - 0.004 17.1 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|219851805|ref|YP_002466237.1| - 0.037 13.9 0.0 0.087 12.7 0.0 1.5 1 0 0 1 1 1 0 GHKL domain MerR-DNA-bind PF09278.11 gi|219851805|ref|YP_002466237.1| - 0.11 13.1 1.6 21 5.8 0.0 2.8 3 0 0 3 3 3 0 MerR, DNA binding Med10 PF09748.9 gi|219851805|ref|YP_002466237.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex TauE PF01925.19 gi|219851806|ref|YP_002466238.1| - 7.2e-48 163.3 43.9 8.8e-48 163.0 43.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE PuR_N PF09182.10 gi|219851806|ref|YP_002466238.1| - 4.8 7.2 5.2 38 4.3 0.8 2.6 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal Prok-E2_A PF14457.6 gi|219851807|ref|YP_002466239.1| - 0.16 11.6 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic E2 family A DGC PF08859.11 gi|219851808|ref|YP_002466240.1| - 1.8e-13 50.5 2.1 3.2e-13 49.7 0.7 1.9 1 1 1 2 2 2 1 DGC domain SnoaL PF07366.12 gi|219851809|ref|YP_002466241.1| - 6.8e-31 106.7 0.1 7.7e-31 106.5 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|219851809|ref|YP_002466241.1| - 3.7e-08 33.9 0.3 4.4e-08 33.7 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|219851809|ref|YP_002466241.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4440) zf-CDGSH PF09360.10 gi|219851810|ref|YP_002466242.1| - 1.9e-39 133.6 7.0 2e-19 69.6 0.5 2.6 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|219851810|ref|YP_002466242.1| - 1e-10 41.5 0.1 3.1e-10 40.0 0.0 1.9 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster MSL2-CXC PF16682.5 gi|219851810|ref|YP_002466242.1| - 0.6 10.3 5.6 11 6.2 0.4 2.5 2 0 0 2 2 2 0 CXC domain of E3 ubiquitin-protein ligase MSL2 Isochorismatase PF00857.20 gi|219851811|ref|YP_002466243.1| - 1.4e-25 90.5 0.0 2.3e-25 89.8 0.0 1.4 1 1 0 1 1 1 1 Isochorismatase family FMN_red PF03358.15 gi|219851812|ref|YP_002466244.1| - 3.1e-36 124.4 0.0 4.4e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219851812|ref|YP_002466244.1| - 5.4e-08 32.8 0.0 8.5e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold RTP1_C2 PF10304.9 gi|219851812|ref|YP_002466244.1| - 0.17 11.6 1.2 0.5 10.1 1.4 1.7 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 2 Hydrolase_4 PF12146.8 gi|219851813|ref|YP_002466245.1| - 4.8e-07 29.3 0.0 1.2e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Palm_thioest PF02089.15 gi|219851813|ref|YP_002466245.1| - 3.7e-05 23.7 0.0 4.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Abhydrolase_1 PF00561.20 gi|219851813|ref|YP_002466245.1| - 0.00027 20.7 0.0 0.00038 20.2 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Ser_hydrolase PF06821.13 gi|219851813|ref|YP_002466245.1| - 0.00061 19.7 0.0 0.00081 19.3 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase Abhydrolase_6 PF12697.7 gi|219851813|ref|YP_002466245.1| - 0.001 19.8 0.0 0.0011 19.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF915 PF06028.11 gi|219851813|ref|YP_002466245.1| - 0.014 14.8 0.0 3.8 6.8 0.0 2.9 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) Lipase_2 PF01674.18 gi|219851813|ref|YP_002466245.1| - 0.054 13.0 0.1 0.85 9.1 0.1 2.1 1 1 0 1 1 1 0 Lipase (class 2) DUF676 PF05057.14 gi|219851813|ref|YP_002466245.1| - 0.065 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) DUF900 PF05990.12 gi|219851813|ref|YP_002466245.1| - 0.17 11.4 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Usp PF00582.26 gi|219851814|ref|YP_002466246.1| - 3.6e-35 121.5 0.1 4.1e-35 121.4 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|219851814|ref|YP_002466246.1| - 0.0052 16.8 0.0 0.007 16.4 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase FMN_red PF03358.15 gi|219851815|ref|YP_002466247.1| - 3e-31 108.3 0.0 3.9e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219851815|ref|YP_002466247.1| - 3.8e-20 72.4 0.0 5.6e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF5042 PF16445.5 gi|219851815|ref|YP_002466247.1| - 0.14 10.5 0.0 0.22 9.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5042) DUF2430 PF10353.9 gi|219851815|ref|YP_002466247.1| - 2.3 8.6 4.9 3.4 8.1 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2430) DNA_pol_B PF00136.21 gi|219851816|ref|YP_002466248.1| - 5.2e-14 51.8 0.0 2.9e-08 32.9 0.0 3.0 2 1 1 3 3 3 3 DNA polymerase family B Flavin_Reduct PF01613.18 gi|219851820|ref|YP_002466252.1| - 8.3e-19 68.1 0.0 9.5e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain AIRS PF00586.24 gi|219851821|ref|YP_002466253.1| - 4.6e-22 78.5 1.4 8.9e-22 77.6 1.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF460 PF04312.13 gi|219851822|ref|YP_002466254.1| - 1.5e-46 157.6 0.0 3e-46 156.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) PucR PF07905.11 gi|219851822|ref|YP_002466254.1| - 0.00021 21.5 0.0 0.0006 20.1 0.0 1.8 1 0 0 1 1 1 1 Purine catabolism regulatory protein-like family DUF641 PF04859.12 gi|219851822|ref|YP_002466254.1| - 0.0018 18.6 5.9 0.51 10.7 2.9 2.5 1 1 1 2 2 2 2 Plant protein of unknown function (DUF641) acVLRF1 PF18859.1 gi|219851822|ref|YP_002466254.1| - 0.0026 18.1 1.8 0.0026 18.1 1.8 2.3 3 0 0 3 3 2 1 Actinobacteria/chloroflexi VLRF1 release factor SlyX PF04102.12 gi|219851822|ref|YP_002466254.1| - 0.09 13.4 0.1 0.09 13.4 0.1 3.6 2 1 1 3 3 3 0 SlyX Csm1_N PF18504.1 gi|219851822|ref|YP_002466254.1| - 0.64 10.4 9.7 5 7.5 5.5 2.8 1 1 1 2 2 2 0 Csm1 N-terminal domain Lzipper-MIP1 PF14389.6 gi|219851822|ref|YP_002466254.1| - 0.76 10.1 7.0 1.8 8.9 1.8 3.0 2 1 1 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 DUF4407 PF14362.6 gi|219851822|ref|YP_002466254.1| - 0.78 9.0 5.3 1.3 8.3 5.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Spc29 PF17082.5 gi|219851822|ref|YP_002466254.1| - 1.1 9.0 7.7 9.6 6.0 2.9 2.2 1 1 1 2 2 2 0 Spindle Pole Component 29 Fib_alpha PF08702.10 gi|219851822|ref|YP_002466254.1| - 1.4 9.1 3.5 2.1 8.6 1.8 1.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family PKcGMP_CC PF16808.5 gi|219851822|ref|YP_002466254.1| - 5.4 7.0 14.4 0.64 9.9 0.9 3.2 3 0 0 3 3 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase OmpH PF03938.14 gi|219851822|ref|YP_002466254.1| - 6.2 7.2 8.6 29 5.0 8.6 2.1 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) RIO1 PF01163.22 gi|219851823|ref|YP_002466255.1| - 2.2e-45 154.6 0.0 3.2e-45 154.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|219851823|ref|YP_002466255.1| - 3.2e-22 78.5 0.2 5.4e-22 77.8 0.2 1.3 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|219851823|ref|YP_002466255.1| - 7e-05 22.9 0.2 0.037 14.0 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|219851823|ref|YP_002466255.1| - 0.0026 17.2 0.1 0.0077 15.6 0.1 1.8 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|219851823|ref|YP_002466255.1| - 0.076 12.6 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) PCI PF01399.27 gi|219851823|ref|YP_002466255.1| - 0.1 13.1 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 PCI domain TrkA_N PF02254.18 gi|219851825|ref|YP_002466257.1| - 1.3e-36 125.4 4.7 1.3e-22 80.3 0.2 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|219851825|ref|YP_002466257.1| - 1.4e-15 56.9 6.7 2.7e-08 33.5 0.1 3.9 4 1 0 4 4 4 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|219851825|ref|YP_002466257.1| - 2.3e-09 37.1 10.9 5.1e-09 36.0 10.9 1.5 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.21 gi|219851825|ref|YP_002466257.1| - 0.0001 22.4 0.3 1.2 9.2 0.1 3.3 3 0 0 3 3 3 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|219851825|ref|YP_002466257.1| - 0.00034 21.0 0.4 0.05 14.1 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Castor_Poll_mid PF06241.12 gi|219851825|ref|YP_002466257.1| - 0.0042 17.0 0.0 0.28 11.2 0.0 2.9 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel XdhC_C PF13478.6 gi|219851825|ref|YP_002466257.1| - 0.017 15.7 1.0 5.6 7.5 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain LpxI_N PF17930.1 gi|219851825|ref|YP_002466257.1| - 0.074 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 LpxI N-terminal domain FAD_binding_3 PF01494.19 gi|219851825|ref|YP_002466257.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|219851825|ref|YP_002466257.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IRK PF01007.20 gi|219851825|ref|YP_002466257.1| - 0.32 10.8 3.5 0.26 11.1 1.8 1.7 1 1 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain Ion_trans PF00520.31 gi|219851825|ref|YP_002466257.1| - 0.35 10.0 8.2 0.57 9.4 8.2 1.3 1 0 0 1 1 1 0 Ion transport protein NAD_synthase PF02540.17 gi|219851826|ref|YP_002466258.1| - 1.8e-70 236.8 0.0 2.2e-70 236.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|219851826|ref|YP_002466258.1| - 0.00086 18.2 0.0 0.0022 16.9 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|219851826|ref|YP_002466258.1| - 0.011 15.5 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|219851826|ref|YP_002466258.1| - 0.071 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|219851826|ref|YP_002466258.1| - 0.12 12.5 0.0 2 8.4 0.0 2.1 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family GPI PF06560.11 gi|219851827|ref|YP_002466259.1| - 3e-37 127.7 1.0 3.9e-37 127.3 1.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|219851827|ref|YP_002466259.1| - 0.0027 17.4 0.1 0.0061 16.2 0.1 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|219851827|ref|YP_002466259.1| - 0.094 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Cupin ARD PF03079.14 gi|219851827|ref|YP_002466259.1| - 0.18 12.0 0.0 0.93 9.7 0.0 1.9 2 0 0 2 2 2 0 ARD/ARD' family RNB PF00773.19 gi|219851828|ref|YP_002466260.1| - 1.3e-65 221.8 0.0 1.7e-65 221.5 0.0 1.1 1 0 0 1 1 1 1 RNB domain RNase_II_C_S1 PF18614.1 gi|219851828|ref|YP_002466260.1| - 5.4e-15 55.1 0.1 2.3e-14 53.0 0.0 2.1 2 0 0 2 2 2 1 RNase II-type exonuclease C-terminal S1 domain Nitroreductase PF00881.24 gi|219851829|ref|YP_002466261.1| - 4e-37 127.9 0.0 4.8e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|219851829|ref|YP_002466261.1| - 1.8e-16 60.4 0.0 2.4e-06 27.3 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase PEP_hydrolase PF09370.10 gi|219851829|ref|YP_002466261.1| - 0.047 12.9 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like DUF1409 PF07197.12 gi|219851829|ref|YP_002466261.1| - 0.078 12.9 0.0 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1409) CARDB PF07705.11 gi|219851830|ref|YP_002466262.1| - 1.2e-07 32.0 10.4 0.031 14.6 1.1 3.4 3 0 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|219851830|ref|YP_002466262.1| - 3.3e-07 30.4 7.5 0.052 13.8 0.0 4.4 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase PHTB1_C PF14728.6 gi|219851830|ref|YP_002466262.1| - 0.019 14.1 0.4 2 7.4 0.0 2.9 3 0 0 3 3 3 0 PTHB1 C-terminus ASH PF15780.5 gi|219851830|ref|YP_002466262.1| - 0.033 14.4 0.2 6.9 6.9 0.0 2.9 3 0 0 3 3 3 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Peptidase_M73 PF12389.8 gi|219851830|ref|YP_002466262.1| - 0.095 12.5 0.8 0.38 10.6 0.0 2.3 3 1 1 4 4 4 0 Camelysin metallo-endopeptidase TrmB PF01978.19 gi|219851831|ref|YP_002466263.1| - 1.6e-19 69.5 0.0 3.4e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|219851831|ref|YP_002466263.1| - 0.0023 17.1 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|219851831|ref|YP_002466263.1| - 0.0043 16.8 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|219851831|ref|YP_002466263.1| - 0.037 14.0 0.0 0.095 12.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|219851831|ref|YP_002466263.1| - 0.078 13.3 0.0 0.17 12.2 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor NRD1_2 PF01995.16 gi|219851832|ref|YP_002466264.1| - 7.4e-89 297.1 0.0 8.3e-89 296.9 0.0 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 Antifungal_pept PF11410.8 gi|219851832|ref|YP_002466264.1| - 2.2 8.2 4.4 2.8 7.9 0.2 2.3 2 0 0 2 2 2 0 Antifungal peptide Pyr_redox_2 PF07992.14 gi|219851834|ref|YP_002466266.1| - 2.3e-45 155.1 7.1 2.8e-45 154.8 7.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|219851834|ref|YP_002466266.1| - 4.3e-15 55.8 1.6 2.6e-11 43.3 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|219851834|ref|YP_002466266.1| - 6.6e-13 49.0 6.6 3.2e-10 40.4 0.3 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|219851834|ref|YP_002466266.1| - 5.3e-08 32.8 14.9 0.0016 18.1 0.6 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.22 gi|219851834|ref|YP_002466266.1| - 2.6e-06 26.8 13.2 5.6e-05 22.4 6.6 3.4 2 2 2 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|219851834|ref|YP_002466266.1| - 3e-06 26.6 4.0 0.0049 16.0 0.7 2.6 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|219851834|ref|YP_002466266.1| - 4.8e-06 25.5 5.1 0.00023 20.0 0.5 3.3 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|219851834|ref|YP_002466266.1| - 2.8e-05 23.7 2.8 2.8e-05 23.7 2.8 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|219851834|ref|YP_002466266.1| - 0.0003 20.1 0.5 0.0003 20.1 0.5 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|219851834|ref|YP_002466266.1| - 0.00047 20.3 0.7 0.00047 20.3 0.7 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|219851834|ref|YP_002466266.1| - 0.0021 17.0 0.2 0.0021 17.0 0.2 2.3 3 0 0 3 3 3 1 Tryptophan halogenase 3HCDH_N PF02737.18 gi|219851834|ref|YP_002466266.1| - 0.0042 17.0 2.3 0.35 10.7 0.3 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_dim PF02852.22 gi|219851834|ref|YP_002466266.1| - 0.0063 16.8 0.0 0.02 15.2 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ApbA PF02558.16 gi|219851834|ref|YP_002466266.1| - 0.012 15.2 2.5 0.08 12.6 0.3 2.6 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|219851834|ref|YP_002466266.1| - 0.016 15.2 8.9 2.3 8.2 0.1 3.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|219851834|ref|YP_002466266.1| - 0.019 14.1 1.1 0.023 13.9 0.1 1.7 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_Gly3P_dh_N PF01210.23 gi|219851834|ref|YP_002466266.1| - 0.077 13.0 1.0 1.7 8.6 0.0 2.8 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.6 gi|219851834|ref|YP_002466266.1| - 0.13 12.8 0.7 4.2 7.8 0.1 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|219851834|ref|YP_002466266.1| - 0.27 10.5 6.5 5.9 6.1 4.3 3.1 2 1 0 2 2 2 0 Thi4 family Amino_oxidase PF01593.24 gi|219851834|ref|YP_002466266.1| - 0.29 10.4 6.2 0.39 9.9 0.1 2.7 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|219851834|ref|YP_002466266.1| - 4.1 6.4 6.2 0.79 8.7 0.9 2.4 2 2 1 3 3 3 0 Lycopene cyclase protein ThiI PF02568.14 gi|219851835|ref|YP_002466267.1| - 4.3e-63 212.5 0.3 5.6e-63 212.1 0.3 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|219851835|ref|YP_002466267.1| - 4.4e-12 46.3 0.9 7.4e-12 45.6 0.1 1.7 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|219851835|ref|YP_002466267.1| - 3.5e-08 33.2 0.1 1e-07 31.7 0.1 1.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|219851835|ref|YP_002466267.1| - 0.0011 18.7 0.0 0.039 13.7 0.0 2.2 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|219851835|ref|YP_002466267.1| - 0.011 14.6 0.0 0.017 13.9 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Abhydrolase_1 PF00561.20 gi|219851836|ref|YP_002466268.1| - 6.7e-35 121.0 0.2 9.1e-35 120.5 0.2 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|219851836|ref|YP_002466268.1| - 2e-23 82.6 0.5 2.2e-11 44.0 0.1 2.6 2 0 0 2 2 2 2 CBS domain Hydrolase_4 PF12146.8 gi|219851836|ref|YP_002466268.1| - 0.0014 18.0 0.1 0.015 14.5 0.1 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|219851836|ref|YP_002466268.1| - 0.0028 18.3 0.1 0.005 17.5 0.1 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family BppL_N PF18338.1 gi|219851836|ref|YP_002466268.1| - 0.11 12.3 0.3 0.26 11.1 0.3 1.7 1 0 0 1 1 1 0 Lower baseplate protein N-terminal domain Cys_Met_Meta_PP PF01053.20 gi|219851837|ref|YP_002466269.1| - 1.5e-139 464.8 0.0 1.7e-139 464.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|219851837|ref|YP_002466269.1| - 1.9e-09 37.3 0.2 2.9e-09 36.7 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|219851837|ref|YP_002466269.1| - 3.9e-08 32.6 0.1 6e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219851837|ref|YP_002466269.1| - 0.012 14.9 0.0 0.029 13.6 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|219851837|ref|YP_002466269.1| - 0.032 12.7 0.7 0.085 11.4 0.7 1.6 1 1 0 1 1 1 0 Methionine gamma-lyase SepSecS PF05889.13 gi|219851838|ref|YP_002466270.1| - 5.9e-18 64.7 0.0 1e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|219851838|ref|YP_002466270.1| - 6.1e-16 58.3 0.0 8.6e-16 57.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|219851838|ref|YP_002466270.1| - 0.0001 21.6 0.0 0.00018 20.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II UPF0236 PF06782.11 gi|219851838|ref|YP_002466270.1| - 0.0088 14.7 0.0 0.074 11.7 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0236) Cys_Met_Meta_PP PF01053.20 gi|219851838|ref|YP_002466270.1| - 0.017 13.6 0.1 0.039 12.5 0.1 1.5 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme TfuA PF07812.12 gi|219851839|ref|YP_002466271.1| - 2.6e-43 146.5 0.0 3.5e-43 146.1 0.0 1.2 1 0 0 1 1 1 1 TfuA-like protein YcaO PF02624.16 gi|219851840|ref|YP_002466272.1| - 1.2e-92 310.6 0.9 1.9e-92 310.0 0.9 1.3 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding NadA PF02445.16 gi|219851841|ref|YP_002466273.1| - 1.5e-98 329.7 6.3 1.6e-98 329.5 6.3 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Crp PF00325.20 gi|219851841|ref|YP_002466273.1| - 0.2 11.4 0.4 13 5.6 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family HTH_3 PF01381.22 gi|219851842|ref|YP_002466274.1| - 0.0008 19.4 0.2 0.0014 18.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|219851842|ref|YP_002466274.1| - 0.0025 17.5 0.1 0.0051 16.6 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|219851842|ref|YP_002466274.1| - 0.0057 16.5 0.1 0.22 11.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_35 PF13693.6 gi|219851842|ref|YP_002466274.1| - 0.012 15.6 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|219851842|ref|YP_002466274.1| - 0.04 13.9 0.8 0.13 12.3 0.7 1.8 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|219851842|ref|YP_002466274.1| - 0.073 13.2 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PaREP1 PF05942.11 gi|219851842|ref|YP_002466274.1| - 0.14 12.1 0.1 0.18 11.7 0.1 1.1 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family HTH_24 PF13412.6 gi|219851842|ref|YP_002466274.1| - 0.16 11.6 0.0 0.36 10.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NAD_synthase PF02540.17 gi|219851843|ref|YP_002466275.1| - 6.5e-06 25.4 0.0 9.8e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|219851843|ref|YP_002466275.1| - 0.006 16.3 0.1 0.0085 15.8 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|219851843|ref|YP_002466275.1| - 0.044 13.5 0.0 0.096 12.4 0.0 1.6 1 0 0 1 1 1 0 PP-loop family tRNA_Me_trans PF03054.16 gi|219851843|ref|YP_002466275.1| - 0.19 10.5 0.0 1.2 7.9 0.0 1.9 2 0 0 2 2 2 0 tRNA methyl transferase Aminotran_5 PF00266.19 gi|219851844|ref|YP_002466276.1| - 9.4e-117 390.1 0.0 1.1e-116 389.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|219851844|ref|YP_002466276.1| - 3.9e-10 39.6 0.7 6.7e-10 38.8 0.7 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219851844|ref|YP_002466276.1| - 1.4e-08 33.7 0.0 2.6e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|219851844|ref|YP_002466276.1| - 4.3e-08 32.8 0.0 5.9e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|219851844|ref|YP_002466276.1| - 4.7e-05 22.7 0.0 0.00014 21.2 0.0 1.7 1 1 1 2 2 2 1 Aminotransferase class I and II FdhD-NarQ PF02634.15 gi|219851845|ref|YP_002466277.1| - 8.3e-70 235.1 0.1 9.6e-70 234.9 0.1 1.0 1 0 0 1 1 1 1 FdhD/NarQ family Gp138_N PF18352.1 gi|219851845|ref|YP_002466277.1| - 0.13 12.4 0.0 18 5.4 0.0 2.4 2 0 0 2 2 2 0 Phage protein Gp138 N-terminal domain ATP_bind_3 PF01171.20 gi|219851846|ref|YP_002466278.1| - 1.2e-15 57.8 0.0 1.7e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|219851846|ref|YP_002466278.1| - 0.0002 20.9 0.0 0.00042 19.9 0.0 1.6 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|219851846|ref|YP_002466278.1| - 0.00021 20.2 0.0 0.00029 19.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|219851846|ref|YP_002466278.1| - 0.0015 18.6 0.0 0.0019 18.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|219851846|ref|YP_002466278.1| - 0.0053 15.9 0.0 0.0074 15.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|219851846|ref|YP_002466278.1| - 0.016 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase zn-ribbon_14 PF16503.5 gi|219851846|ref|YP_002466278.1| - 0.016 14.7 4.0 0.016 14.7 4.0 2.7 3 0 0 3 3 3 0 Zinc-ribbon ThiS PF02597.20 gi|219851847|ref|YP_002466279.1| - 2.7e-08 34.4 0.1 2.9e-08 34.2 0.1 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|219851847|ref|YP_002466279.1| - 0.019 15.0 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 ThiS-like ubiquitin TrkA_C PF02080.21 gi|219851847|ref|YP_002466279.1| - 0.06 13.2 0.3 0.088 12.7 0.3 1.3 1 0 0 1 1 1 0 TrkA-C domain PALP PF00291.25 gi|219851848|ref|YP_002466280.1| - 4.2e-70 236.5 0.3 4.8e-70 236.3 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|219851848|ref|YP_002466280.1| - 0.0015 18.5 0.6 0.017 15.1 0.6 2.3 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Pribosyltran PF00156.27 gi|219851848|ref|YP_002466280.1| - 0.02 14.4 0.1 0.18 11.3 0.0 2.1 2 0 0 2 2 2 0 Phosphoribosyl transferase domain TFIIB PF00382.19 gi|219851848|ref|YP_002466280.1| - 0.044 13.8 0.0 0.084 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcription factor TFIIB repeat Abhydrolase_3 PF07859.13 gi|219851848|ref|YP_002466280.1| - 0.05 13.5 0.0 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold FeS_assembly_P PF01883.19 gi|219851849|ref|YP_002466281.1| - 5e-20 71.5 0.8 8.2e-20 70.8 0.8 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Hexapep PF00132.24 gi|219851849|ref|YP_002466281.1| - 1.3e-12 46.9 10.8 1.2e-06 28.0 2.8 2.9 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|219851849|ref|YP_002466281.1| - 1.5e-07 31.0 12.5 2.8e-05 23.8 2.5 2.7 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|219851849|ref|YP_002466281.1| - 0.0034 17.7 0.0 0.006 17.0 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal ThiP_synth PF10120.9 gi|219851850|ref|YP_002466282.1| - 8.3e-50 168.6 0.2 1e-49 168.3 0.2 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase AIRS_C PF02769.22 gi|219851851|ref|YP_002466283.1| - 3.1e-23 82.6 0.1 4.5e-23 82.1 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|219851851|ref|YP_002466283.1| - 4.3e-13 49.7 0.2 9.7e-13 48.6 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M24 PF00557.24 gi|219851852|ref|YP_002466284.1| - 1.4e-36 126.2 0.0 1.9e-36 125.7 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|219851852|ref|YP_002466284.1| - 5.5e-09 36.8 0.2 8.2e-09 36.2 0.2 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Glu_synthase PF01645.17 gi|219851854|ref|YP_002466286.1| - 7e-92 308.4 0.1 8.7e-92 308.1 0.1 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Rubredoxin PF00301.20 gi|219851854|ref|YP_002466286.1| - 2.7e-11 43.3 2.7 5.9e-10 39.0 1.0 2.5 2 0 0 2 2 2 1 Rubredoxin FMN_dh PF01070.18 gi|219851854|ref|YP_002466286.1| - 3.9e-09 36.0 6.7 2.8e-07 29.9 4.0 2.9 2 1 1 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|219851854|ref|YP_002466286.1| - 7.7e-08 31.7 1.7 1.3e-07 31.0 1.7 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|219851854|ref|YP_002466286.1| - 2.3e-05 23.9 1.5 3.9e-05 23.2 1.5 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase LrgB PF04172.16 gi|219851854|ref|YP_002466286.1| - 0.0022 17.6 0.9 0.0035 16.9 0.9 1.2 1 0 0 1 1 1 1 LrgB-like family His_biosynth PF00977.21 gi|219851854|ref|YP_002466286.1| - 0.011 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein zf-Sec23_Sec24 PF04810.15 gi|219851854|ref|YP_002466286.1| - 0.025 14.6 2.9 1.4 9.0 0.0 3.3 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger zf-RRN7 PF11781.8 gi|219851854|ref|YP_002466286.1| - 0.027 14.2 8.0 2.4 7.9 1.3 3.6 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|219851854|ref|YP_002466286.1| - 0.062 12.8 6.9 2.9 7.5 0.1 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Vps36-NZF-N PF16988.5 gi|219851854|ref|YP_002466286.1| - 0.089 12.2 2.9 0.31 10.5 2.9 2.0 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain PsiE PF06146.12 gi|219851855|ref|YP_002466287.1| - 1.2e-06 28.7 2.0 1.2e-06 28.7 2.0 2.1 2 1 0 2 2 2 1 Phosphate-starvation-inducible E MerC PF03203.14 gi|219851855|ref|YP_002466287.1| - 0.04 14.4 6.6 0.11 12.9 6.4 1.8 1 1 1 2 2 2 0 MerC mercury resistance protein DUF3082 PF11282.8 gi|219851855|ref|YP_002466287.1| - 0.072 13.3 5.0 0.22 11.8 2.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3082) FtsX PF02687.21 gi|219851855|ref|YP_002466287.1| - 1.5 9.3 9.7 1.1 9.8 3.2 2.2 2 0 0 2 2 2 0 FtsX-like permease family PMT_2 PF13231.6 gi|219851855|ref|YP_002466287.1| - 1.6 8.9 11.9 0.93 9.7 1.5 2.2 1 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Pyridox_ox_2 PF12900.7 gi|219851856|ref|YP_002466288.1| - 7e-19 68.2 0.0 8e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|219851856|ref|YP_002466288.1| - 5.2e-09 36.2 0.0 6.6e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase eIF-1a PF01176.19 gi|219851857|ref|YP_002466289.1| - 5.7e-18 64.5 0.1 6.9e-18 64.2 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 FAM83 PF07894.12 gi|219851857|ref|YP_002466289.1| - 0.08 12.5 0.0 0.088 12.3 0.0 1.1 1 0 0 1 1 1 0 FAM83 A-H MFS_1 PF07690.16 gi|219851859|ref|YP_002466291.1| - 1e-60 205.6 42.6 1.7e-60 204.8 42.6 1.4 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219851859|ref|YP_002466291.1| - 3.2e-10 39.5 12.1 3.2e-10 39.5 12.1 2.5 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|219851859|ref|YP_002466291.1| - 5.2e-10 38.3 16.5 1.1e-08 34.0 7.7 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|219851859|ref|YP_002466291.1| - 7.2e-05 21.8 7.1 7.2e-05 21.8 7.1 2.6 2 1 1 3 3 3 3 MFS_1 like family DUF3464 PF11947.8 gi|219851859|ref|YP_002466291.1| - 5.6 6.7 5.0 9.2 6.0 0.3 2.8 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 GyrI-like PF06445.15 gi|219851860|ref|YP_002466292.1| - 4.6e-27 95.2 0.1 5.7e-27 94.9 0.1 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|219851860|ref|YP_002466292.1| - 2.1e-08 34.4 0.0 2.5e-08 34.2 0.0 1.3 1 1 0 1 1 1 1 Integron-associated effector binding protein Mntp PF02659.15 gi|219851861|ref|YP_002466293.1| - 6.7e-40 136.3 12.1 6.7e-40 136.3 12.1 1.6 2 0 0 2 2 2 1 Putative manganese efflux pump HicA_toxin PF07927.12 gi|219851862|ref|YP_002466294.1| - 4.7e-11 42.6 0.0 5.6e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|219851863|ref|YP_002466295.1| - 1.2e-06 28.7 0.0 1.2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system PadR PF03551.14 gi|219851864|ref|YP_002466296.1| - 2.1e-16 59.7 0.4 4.8e-16 58.5 0.3 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|219851864|ref|YP_002466296.1| - 0.00035 21.2 0.0 0.00062 20.4 0.0 1.4 1 1 0 1 1 1 1 Replication terminator protein Penicillinase_R PF03965.16 gi|219851864|ref|YP_002466296.1| - 0.079 13.3 0.0 14 6.0 0.0 2.2 1 1 1 2 2 2 0 Penicillinase repressor DUF4364 PF14277.6 gi|219851864|ref|YP_002466296.1| - 0.1 12.3 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|219851864|ref|YP_002466296.1| - 0.11 12.3 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|219851864|ref|YP_002466296.1| - 0.13 12.2 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix ABC2_membrane PF01061.24 gi|219851865|ref|YP_002466297.1| - 2.2e-05 24.0 8.8 2.7e-05 23.7 8.8 1.0 1 0 0 1 1 1 1 ABC-2 type transporter DUF5453 PF17534.2 gi|219851866|ref|YP_002466298.1| - 0.0031 17.5 2.4 0.0036 17.3 2.4 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5453) CCSMST1 PF15013.6 gi|219851866|ref|YP_002466298.1| - 0.12 12.5 1.1 6.4 7.0 0.3 2.1 2 0 0 2 2 2 0 CCSMST1 family DUF2207 PF09972.9 gi|219851866|ref|YP_002466298.1| - 1.6 7.4 4.0 1.7 7.3 4.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DZR PF12773.7 gi|219851868|ref|YP_002466300.1| - 1.5e-06 28.1 9.2 0.0022 18.0 1.9 2.2 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|219851868|ref|YP_002466300.1| - 9e-05 21.7 10.0 0.00045 19.5 2.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219851868|ref|YP_002466300.1| - 0.0007 19.2 11.6 0.012 15.3 1.5 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|219851868|ref|YP_002466300.1| - 0.0045 17.7 6.0 0.2 12.4 0.8 2.3 2 0 0 2 2 2 2 zinc-ribbon family DUF2116 PF09889.9 gi|219851868|ref|YP_002466300.1| - 0.021 14.8 2.6 0.9 9.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-NADH-PPase PF09297.11 gi|219851868|ref|YP_002466300.1| - 0.022 14.4 0.7 0.022 14.4 0.7 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain DUF983 PF06170.12 gi|219851868|ref|YP_002466300.1| - 0.058 13.8 0.1 0.058 13.8 0.1 3.8 4 1 1 5 5 5 0 Protein of unknown function (DUF983) zinc-ribbons_6 PF07191.12 gi|219851868|ref|YP_002466300.1| - 0.99 9.4 5.6 52 3.9 5.6 2.3 1 1 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|219851868|ref|YP_002466300.1| - 3.4 7.7 4.6 7 6.7 0.6 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|219851868|ref|YP_002466300.1| - 4.2 7.6 9.5 86 3.4 0.1 4.0 4 0 0 4 4 4 0 Zinc ribbon domain TackOD1 PF18551.1 gi|219851868|ref|YP_002466300.1| - 4.4 6.9 6.3 14 5.2 0.7 2.2 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 SNN_transmemb PF09049.10 gi|219851869|ref|YP_002466301.1| - 0.13 12.2 1.4 0.41 10.6 1.4 1.9 1 0 0 1 1 1 0 Stannin transmembrane DUF2284 PF10050.9 gi|219851870|ref|YP_002466302.1| - 1.7e-47 161.2 0.0 2e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) MarR_2 PF12802.7 gi|219851871|ref|YP_002466303.1| - 1.2e-11 44.3 0.1 1.9e-11 43.7 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|219851871|ref|YP_002466303.1| - 1.1e-10 41.3 0.0 2e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|219851871|ref|YP_002466303.1| - 1.1e-07 32.2 0.1 2.1e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|219851871|ref|YP_002466303.1| - 0.0019 18.0 0.1 0.0034 17.2 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|219851871|ref|YP_002466303.1| - 0.043 13.7 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|219851871|ref|YP_002466303.1| - 0.047 13.5 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MFS_1 PF07690.16 gi|219851872|ref|YP_002466304.1| - 2.1e-50 171.7 53.1 2.1e-50 171.7 53.1 2.3 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|219851872|ref|YP_002466304.1| - 4.8e-08 32.0 41.7 0.00017 20.3 24.1 2.8 2 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|219851872|ref|YP_002466304.1| - 2.5e-05 23.3 38.1 0.00012 21.2 10.1 3.0 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|219851872|ref|YP_002466304.1| - 0.0022 16.5 16.6 0.0022 16.5 16.6 2.7 2 1 2 4 4 4 1 Transmembrane secretion effector Tymo_coat PF00983.18 gi|219851872|ref|YP_002466304.1| - 0.051 13.4 0.2 0.23 11.2 0.1 2.1 2 0 0 2 2 2 0 Tymovirus coat protein TMEM208_SND2 PF05620.11 gi|219851872|ref|YP_002466304.1| - 6 6.6 8.0 0.81 9.4 0.6 2.6 2 0 0 2 2 2 0 SRP-independent targeting protein 2/TMEM208 vATP-synt_AC39 PF01992.16 gi|219851873|ref|YP_002466305.1| - 9.3e-67 225.9 0.2 1.1e-66 225.7 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_D PF01813.17 gi|219851874|ref|YP_002466306.1| - 1.5e-41 142.4 1.4 1.8e-41 142.2 1.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Phos_pyr_kin PF08543.12 gi|219851875|ref|YP_002466307.1| - 7.2e-74 248.3 0.0 8.8e-74 248.0 0.0 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|219851875|ref|YP_002466307.1| - 2.4e-06 27.1 0.0 3.2e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|219851875|ref|YP_002466307.1| - 0.0015 18.1 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase PrsW-protease PF13367.6 gi|219851876|ref|YP_002466308.1| - 6e-39 133.5 14.3 7.9e-39 133.1 14.3 1.1 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease MacB_PCD PF12704.7 gi|219851877|ref|YP_002466309.1| - 5.2e-24 85.7 2.2 5.2e-24 85.7 2.2 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|219851877|ref|YP_002466309.1| - 5.4e-14 52.4 4.3 5.4e-14 52.4 4.3 3.2 3 0 0 3 3 3 1 FtsX-like permease family DUF4358 PF14270.6 gi|219851877|ref|YP_002466309.1| - 0.052 13.8 1.3 0.26 11.6 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4358) ABC_tran PF00005.27 gi|219851878|ref|YP_002466310.1| - 1.7e-33 116.1 0.0 2.3e-33 115.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851878|ref|YP_002466310.1| - 3.7e-06 27.0 0.0 0.041 13.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219851878|ref|YP_002466310.1| - 2.8e-05 23.7 0.0 0.062 12.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219851878|ref|YP_002466310.1| - 0.00096 18.9 0.6 0.0015 18.3 0.1 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|219851878|ref|YP_002466310.1| - 0.0024 18.2 0.1 0.011 16.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|219851878|ref|YP_002466310.1| - 0.0055 16.6 0.0 2.8 7.8 0.0 2.3 2 0 0 2 2 2 2 NTPase RsgA_GTPase PF03193.16 gi|219851878|ref|YP_002466310.1| - 0.0058 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|219851878|ref|YP_002466310.1| - 0.0072 16.1 0.1 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|219851878|ref|YP_002466310.1| - 0.012 16.0 0.1 0.022 15.2 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|219851878|ref|YP_002466310.1| - 0.023 15.2 0.0 0.049 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|219851878|ref|YP_002466310.1| - 0.028 14.5 0.0 2.5 8.2 0.0 2.6 1 1 1 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|219851878|ref|YP_002466310.1| - 0.03 14.2 0.1 0.31 10.9 0.0 2.2 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|219851878|ref|YP_002466310.1| - 0.045 14.3 0.0 0.17 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|219851878|ref|YP_002466310.1| - 0.052 13.8 0.1 0.15 12.3 0.1 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|219851878|ref|YP_002466310.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|219851878|ref|YP_002466310.1| - 0.065 12.3 0.0 0.13 11.3 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|219851878|ref|YP_002466310.1| - 0.084 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|219851878|ref|YP_002466310.1| - 0.14 11.9 0.0 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|219851878|ref|YP_002466310.1| - 0.19 10.9 0.3 0.42 9.8 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain Transglut_C PF00927.22 gi|219851879|ref|YP_002466311.1| - 0.0014 18.7 0.0 1.5 9.0 0.1 3.0 2 1 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain Yip1 PF04893.17 gi|219851880|ref|YP_002466312.1| - 1.5e-22 80.1 15.2 1.8e-22 79.9 15.2 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|219851880|ref|YP_002466312.1| - 8.8e-07 28.9 8.2 1.2e-06 28.4 8.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) TrbC PF04956.13 gi|219851880|ref|YP_002466312.1| - 0.0059 16.8 4.5 0.0059 16.8 4.5 2.7 2 1 0 3 3 3 1 TrbC/VIRB2 family Yip1 PF04893.17 gi|219851881|ref|YP_002466313.1| - 2.9e-31 108.5 23.1 3.6e-31 108.2 23.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|219851881|ref|YP_002466313.1| - 1.3e-08 34.8 17.4 1.8e-08 34.4 17.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) Col_cuticle_N PF01484.17 gi|219851881|ref|YP_002466313.1| - 0.2 11.8 0.5 0.2 11.8 0.5 3.7 5 0 0 5 5 5 0 Nematode cuticle collagen N-terminal domain Virul_fac_BrkB PF03631.15 gi|219851881|ref|YP_002466313.1| - 5.7 6.5 22.5 3.2 7.3 3.2 2.7 1 1 1 2 2 2 0 Virulence factor BrkB FapA PF03961.13 gi|219851882|ref|YP_002466314.1| - 0.012 14.3 6.3 0.018 13.7 6.3 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A ABC_tran PF00005.27 gi|219851883|ref|YP_002466315.1| - 1.8e-32 112.8 0.0 3.2e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851883|ref|YP_002466315.1| - 1e-14 55.1 0.6 7e-08 32.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219851883|ref|YP_002466315.1| - 1.8e-05 25.3 0.0 4.8e-05 24.0 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|219851883|ref|YP_002466315.1| - 3.1e-05 23.9 0.3 0.15 11.8 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|219851883|ref|YP_002466315.1| - 5.2e-05 22.9 0.1 9.6e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219851883|ref|YP_002466315.1| - 0.00041 20.9 0.1 0.0015 19.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|219851883|ref|YP_002466315.1| - 0.0097 15.9 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|219851883|ref|YP_002466315.1| - 0.011 15.6 0.1 0.025 14.5 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|219851883|ref|YP_002466315.1| - 0.011 16.1 0.0 0.018 15.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|219851883|ref|YP_002466315.1| - 0.017 15.6 0.5 0.84 10.1 0.4 3.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|219851883|ref|YP_002466315.1| - 0.031 13.7 0.1 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|219851883|ref|YP_002466315.1| - 0.071 13.4 0.1 0.58 10.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|219851883|ref|YP_002466315.1| - 0.075 12.4 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|219851883|ref|YP_002466315.1| - 0.077 12.9 0.2 12 5.8 0.0 2.4 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|219851883|ref|YP_002466315.1| - 0.078 13.2 0.0 0.66 10.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|219851883|ref|YP_002466315.1| - 0.079 13.0 0.1 0.41 10.7 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|219851883|ref|YP_002466315.1| - 0.12 12.6 0.1 0.66 10.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.21 gi|219851883|ref|YP_002466315.1| - 0.2 11.6 0.0 9.2 6.2 0.0 2.2 2 0 0 2 2 2 0 MutS domain V ABC2_membrane_3 PF12698.7 gi|219851884|ref|YP_002466316.1| - 7.5e-35 120.6 28.7 9.2e-35 120.4 28.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|219851884|ref|YP_002466316.1| - 9.2e-28 97.1 31.6 7.7e-25 87.5 18.7 2.6 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|219851884|ref|YP_002466316.1| - 2.7e-05 23.6 19.1 3.8e-05 23.1 19.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein AI-2E_transport PF01594.16 gi|219851885|ref|YP_002466317.1| - 6.8e-34 117.5 53.3 8.7e-34 117.1 53.3 1.1 1 0 0 1 1 1 1 AI-2E family transporter EVE PF01878.18 gi|219851886|ref|YP_002466318.1| - 9.3e-14 51.7 0.0 1.1e-13 51.5 0.0 1.0 1 0 0 1 1 1 1 EVE domain Glyoxalase PF00903.25 gi|219851887|ref|YP_002466319.1| - 6.4e-10 39.3 0.0 1.3e-09 38.3 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|219851887|ref|YP_002466319.1| - 3.9e-09 36.5 0.0 4.9e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|219851887|ref|YP_002466319.1| - 0.0032 18.3 0.0 0.0041 17.9 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain HxlR PF01638.17 gi|219851888|ref|YP_002466320.1| - 1.9e-32 110.9 0.2 2.7e-32 110.5 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|219851888|ref|YP_002466320.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PadR PF03551.14 gi|219851888|ref|YP_002466320.1| - 0.061 13.3 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Lactamase_B PF00753.27 gi|219851889|ref|YP_002466321.1| - 7.9e-29 101.1 0.6 9.2e-29 100.9 0.6 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219851889|ref|YP_002466321.1| - 2.3e-06 27.3 0.1 3e-06 26.9 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|219851889|ref|YP_002466321.1| - 0.00037 20.0 0.0 0.0094 15.4 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF4919 PF16266.5 gi|219851889|ref|YP_002466321.1| - 0.031 14.2 0.0 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4919) MFS_1 PF07690.16 gi|219851890|ref|YP_002466322.1| - 2.3e-38 132.1 49.3 2.3e-38 132.1 49.3 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF742 PF05331.11 gi|219851890|ref|YP_002466322.1| - 0.12 12.2 0.4 0.31 10.9 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) MarR PF01047.22 gi|219851891|ref|YP_002466323.1| - 4.2e-14 52.2 0.1 1e-13 51.0 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|219851891|ref|YP_002466323.1| - 4.9e-11 42.3 0.0 7.7e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|219851891|ref|YP_002466323.1| - 5.9e-09 35.4 0.0 9.2e-09 34.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|219851891|ref|YP_002466323.1| - 8e-08 32.7 0.0 1.3e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|219851891|ref|YP_002466323.1| - 1.5e-05 25.1 0.0 2.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|219851891|ref|YP_002466323.1| - 6.6e-05 22.7 0.0 0.00017 21.4 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|219851891|ref|YP_002466323.1| - 0.00011 21.9 0.0 0.00021 21.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|219851891|ref|YP_002466323.1| - 0.00033 20.2 0.0 0.00081 19.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|219851891|ref|YP_002466323.1| - 0.00054 19.8 0.0 0.0016 18.4 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|219851891|ref|YP_002466323.1| - 0.0014 18.4 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|219851891|ref|YP_002466323.1| - 0.0047 17.0 0.0 0.0087 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.12 gi|219851891|ref|YP_002466323.1| - 0.0054 16.9 0.0 0.0083 16.3 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_Crp_2 PF13545.6 gi|219851891|ref|YP_002466323.1| - 0.0065 16.4 0.0 0.015 15.3 0.0 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain PI-PLC-C1 PF16670.5 gi|219851891|ref|YP_002466323.1| - 0.0091 15.1 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoinositide phospholipase C, Ca2+-dependent HTH_34 PF13601.6 gi|219851891|ref|YP_002466323.1| - 0.011 15.9 0.2 0.033 14.4 0.1 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|219851891|ref|YP_002466323.1| - 0.012 15.4 0.3 0.029 14.2 0.1 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Rrf2 PF02082.20 gi|219851891|ref|YP_002466323.1| - 0.015 15.7 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator EAP30 PF04157.16 gi|219851891|ref|YP_002466323.1| - 0.021 14.1 0.0 0.032 13.5 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family RPA_C PF08784.11 gi|219851891|ref|YP_002466323.1| - 0.024 15.3 0.0 0.044 14.4 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_39 PF14090.6 gi|219851891|ref|YP_002466323.1| - 0.027 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|219851891|ref|YP_002466323.1| - 0.04 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PCI PF01399.27 gi|219851891|ref|YP_002466323.1| - 0.048 14.2 0.1 0.14 12.7 0.0 2.0 1 1 1 2 2 2 0 PCI domain HTH_1 PF00126.27 gi|219851891|ref|YP_002466323.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family SUKH-3 PF14433.6 gi|219851891|ref|YP_002466323.1| - 0.13 12.7 0.0 0.3 11.6 0.0 1.5 2 0 0 2 2 2 0 SUKH-3 immunity protein Nitroreductase PF00881.24 gi|219851892|ref|YP_002466324.1| - 1.3e-20 74.1 0.0 1.8e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|219851892|ref|YP_002466324.1| - 2.4e-09 36.6 12.3 1.4e-05 24.7 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851892|ref|YP_002466324.1| - 5.4e-09 35.8 10.9 4.1e-05 23.5 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219851892|ref|YP_002466324.1| - 7.1e-07 30.1 6.1 0.0051 17.7 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219851892|ref|YP_002466324.1| - 9e-07 29.0 7.9 1.9e-06 27.9 7.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219851892|ref|YP_002466324.1| - 2.7e-06 27.9 9.5 7.2e-06 26.5 9.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851892|ref|YP_002466324.1| - 7.7e-06 25.7 14.1 0.00042 20.2 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TM1586_NiRdase PF14512.6 gi|219851892|ref|YP_002466324.1| - 7.5e-05 22.4 0.0 0.68 9.5 0.0 2.6 2 1 0 2 2 2 2 Putative TM nitroreductase Fer4_10 PF13237.6 gi|219851892|ref|YP_002466324.1| - 8.2e-05 22.6 10.7 0.0035 17.4 12.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851892|ref|YP_002466324.1| - 0.00028 21.0 9.5 0.0007 19.7 9.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851892|ref|YP_002466324.1| - 0.0018 18.8 8.9 0.1 13.1 10.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219851892|ref|YP_002466324.1| - 0.0062 17.3 7.0 0.25 12.2 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219851892|ref|YP_002466324.1| - 0.027 14.9 13.5 0.51 10.8 2.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219851892|ref|YP_002466324.1| - 0.035 14.8 3.0 0.035 14.8 3.0 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain SelB-wing_1 PF09105.10 gi|219851892|ref|YP_002466324.1| - 0.12 12.3 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Fer4_3 PF12798.7 gi|219851892|ref|YP_002466324.1| - 0.23 12.5 16.6 0.7 11.0 5.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219851892|ref|YP_002466324.1| - 0.51 11.0 14.3 0.4 11.3 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|219851892|ref|YP_002466324.1| - 0.91 10.1 12.2 1.2 9.7 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Methyltransf_31 PF13847.6 gi|219851893|ref|YP_002466325.1| - 3e-24 85.5 0.0 4e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219851893|ref|YP_002466325.1| - 9.3e-19 67.9 0.0 2.2e-18 66.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219851893|ref|YP_002466325.1| - 1.9e-15 57.3 0.0 3.5e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219851893|ref|YP_002466325.1| - 6.6e-14 52.5 0.0 1.2e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219851893|ref|YP_002466325.1| - 5.7e-13 49.0 0.0 8.1e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219851893|ref|YP_002466325.1| - 8.6e-13 48.5 0.0 1.4e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|219851893|ref|YP_002466325.1| - 1.8e-11 43.8 0.0 2.7e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|219851893|ref|YP_002466325.1| - 4.8e-06 26.2 0.0 1.2e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain GCD14 PF08704.10 gi|219851893|ref|YP_002466325.1| - 9.6e-06 25.4 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 gi|219851893|ref|YP_002466325.1| - 5.2e-05 23.0 0.0 8.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.18 gi|219851893|ref|YP_002466325.1| - 0.00018 21.0 0.0 0.1 12.0 0.0 2.3 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain PrmA PF06325.13 gi|219851893|ref|YP_002466325.1| - 0.00018 21.0 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|219851893|ref|YP_002466325.1| - 0.00022 20.8 0.0 0.00096 18.7 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_3 PF01596.17 gi|219851893|ref|YP_002466325.1| - 0.0011 18.2 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase FtsJ PF01728.19 gi|219851893|ref|YP_002466325.1| - 0.0036 17.4 0.0 0.0068 16.5 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.15 gi|219851893|ref|YP_002466325.1| - 0.0039 16.5 0.1 0.0087 15.4 0.1 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|219851893|ref|YP_002466325.1| - 0.0041 16.5 0.0 0.0071 15.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|219851893|ref|YP_002466325.1| - 0.0052 16.2 0.0 0.0071 15.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|219851893|ref|YP_002466325.1| - 0.0084 16.1 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|219851893|ref|YP_002466325.1| - 0.01 15.4 0.2 0.017 14.7 0.2 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltr_RsmB-F PF01189.17 gi|219851893|ref|YP_002466325.1| - 0.017 14.7 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|219851893|ref|YP_002466325.1| - 0.053 13.5 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|219851893|ref|YP_002466325.1| - 0.067 14.2 0.0 0.2 12.7 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.11 gi|219851893|ref|YP_002466325.1| - 0.073 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) HSDR_N PF04313.14 gi|219851894|ref|YP_002466326.1| - 2.7e-12 47.0 0.0 2.8e-08 34.0 0.1 2.6 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|219851894|ref|YP_002466326.1| - 2.1e-10 40.6 0.0 2.7e-08 33.8 0.0 2.2 2 0 0 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) Hormone_3 PF00159.18 gi|219851894|ref|YP_002466326.1| - 0.099 12.7 0.4 12 6.0 0.3 3.0 2 1 0 2 2 2 0 Pancreatic hormone peptide PDDEXK_3 PF13366.6 gi|219851894|ref|YP_002466326.1| - 0.12 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily zinc_ribbon_2 PF13240.6 gi|219851895|ref|YP_002466327.1| - 1e-10 41.0 13.0 8.8e-06 25.3 4.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|219851895|ref|YP_002466327.1| - 3.6e-09 36.5 8.2 5.9e-09 35.8 8.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|219851895|ref|YP_002466327.1| - 0.00012 21.4 12.1 0.02 14.3 3.5 2.4 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|219851895|ref|YP_002466327.1| - 0.01 15.9 4.2 0.01 15.9 4.2 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF898 PF05987.13 gi|219851895|ref|YP_002466327.1| - 0.033 13.3 0.1 0.044 12.8 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) zinc_ribbon_15 PF17032.5 gi|219851895|ref|YP_002466327.1| - 0.043 14.6 9.1 0.68 10.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon family zf-tcix PF14952.6 gi|219851895|ref|YP_002466327.1| - 0.13 11.9 6.5 1.4 8.5 0.8 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc-ribbons_6 PF07191.12 gi|219851895|ref|YP_002466327.1| - 0.51 10.3 8.3 6.4 6.8 8.3 2.1 1 1 0 1 1 1 0 zinc-ribbons NMD3 PF04981.13 gi|219851895|ref|YP_002466327.1| - 0.71 9.3 6.6 1.1 8.7 6.6 1.3 1 0 0 1 1 1 0 NMD3 family DUF2256 PF10013.9 gi|219851895|ref|YP_002466327.1| - 1.1 9.4 7.3 9 6.5 0.2 3.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-RanBP PF00641.18 gi|219851895|ref|YP_002466327.1| - 1.3 8.4 6.1 0.31 10.4 0.8 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.10 gi|219851895|ref|YP_002466327.1| - 2.1 8.5 7.1 12 6.1 0.2 3.0 2 1 1 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|219851895|ref|YP_002466327.1| - 2.6 8.0 11.6 0.87 9.6 0.8 3.3 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-MYND PF01753.18 gi|219851895|ref|YP_002466327.1| - 3.9 7.6 10.1 5.8 7.1 1.7 2.3 2 0 0 2 2 2 0 MYND finger DHHC PF01529.20 gi|219851895|ref|YP_002466327.1| - 4.1 7.5 11.8 0.76 9.9 2.6 3.0 3 0 0 3 3 3 0 DHHC palmitoyltransferase PsbI PF02532.14 gi|219851895|ref|YP_002466327.1| - 5.2 7.1 5.1 11 6.0 5.1 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) HypA PF01155.19 gi|219851895|ref|YP_002466327.1| - 6.5 6.8 10.2 8.3 6.5 1.6 2.6 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Phage_integrase PF00589.22 gi|219851896|ref|YP_002466328.1| - 1.9e-21 76.6 0.0 2.2e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family NHL PF01436.21 gi|219851898|ref|YP_002466330.1| - 2.3e-53 175.6 15.3 6.1e-10 38.6 0.1 6.6 6 0 0 6 6 6 6 NHL repeat SGL PF08450.12 gi|219851898|ref|YP_002466330.1| - 7.3e-23 81.4 13.6 0.001 18.7 0.0 6.0 1 1 5 6 6 6 6 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219851898|ref|YP_002466330.1| - 6.3e-22 77.3 27.3 0.0024 17.8 0.2 6.6 6 0 0 6 6 6 6 Beta-propeller repeat Phytase-like PF13449.6 gi|219851898|ref|YP_002466330.1| - 5.5e-08 33.1 1.2 0.39 10.6 0.0 5.3 2 1 3 6 6 6 2 Esterase-like activity of phytase SdiA-regulated PF06977.11 gi|219851898|ref|YP_002466330.1| - 0.00017 20.9 2.0 17 4.5 0.0 5.0 4 1 2 6 6 6 0 SdiA-regulated US22 PF02393.16 gi|219851898|ref|YP_002466330.1| - 0.00018 21.8 1.8 21 5.4 0.0 5.6 5 1 1 6 6 6 0 US22 like DUF5128 PF17170.4 gi|219851898|ref|YP_002466330.1| - 0.00023 20.4 2.9 0.65 9.1 0.0 3.4 1 1 4 5 5 5 3 6-bladed beta-propeller Dockerin_1 PF00404.18 gi|219851898|ref|YP_002466330.1| - 0.00055 20.1 0.9 0.00055 20.1 0.9 2.1 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219851898|ref|YP_002466330.1| - 0.00066 19.4 7.2 0.038 13.9 0.2 3.1 2 1 1 3 3 3 2 EF-hand domain Glycoprot_B_PH2 PF17417.2 gi|219851898|ref|YP_002466330.1| - 0.00076 19.8 6.0 15 6.0 0.0 5.0 5 0 0 5 5 5 0 Herpesvirus Glycoprotein B PH-like domain EF-hand_1 PF00036.32 gi|219851898|ref|YP_002466330.1| - 0.0038 16.7 10.2 0.047 13.2 0.3 3.1 3 0 0 3 3 3 2 EF hand EF-hand_8 PF13833.6 gi|219851898|ref|YP_002466330.1| - 0.44 10.4 4.9 0.42 10.5 0.3 2.5 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.6 gi|219851898|ref|YP_002466330.1| - 0.59 10.6 2.2 11 6.5 2.2 2.3 1 1 0 1 1 1 0 EF-hand domain pair SNAP-25 PF00835.19 gi|219851898|ref|YP_002466330.1| - 2.2 8.6 5.2 36 4.8 0.2 4.0 3 2 1 4 4 4 0 SNAP-25 family UCH PF00443.29 gi|219851899|ref|YP_002466331.1| - 0.016 14.7 0.5 0.019 14.5 0.5 1.2 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase EF-hand_8 PF13833.6 gi|219851899|ref|YP_002466331.1| - 0.044 13.6 0.1 0.14 12.1 0.0 1.9 2 0 0 2 2 2 0 EF-hand domain pair DUF2173 PF09941.9 gi|219851899|ref|YP_002466331.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) MFS_1 PF07690.16 gi|219851903|ref|YP_002466335.1| - 6.7e-45 153.5 50.4 6.7e-45 153.5 50.4 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|219851903|ref|YP_002466335.1| - 3.4e-05 22.9 21.6 0.0003 19.8 2.8 2.7 2 0 0 2 2 2 2 MFS_1 like family GMC_oxred_N PF00732.19 gi|219851904|ref|YP_002466336.1| - 2e-71 240.8 0.0 2.5e-71 240.5 0.0 1.1 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 gi|219851904|ref|YP_002466336.1| - 4e-38 131.2 0.1 6.6e-38 130.5 0.1 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|219851904|ref|YP_002466336.1| - 8.7e-07 28.4 0.0 0.00035 19.8 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|219851904|ref|YP_002466336.1| - 0.0011 18.6 1.1 0.0096 15.5 0.5 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|219851904|ref|YP_002466336.1| - 0.005 17.0 0.0 0.012 15.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|219851904|ref|YP_002466336.1| - 0.019 14.2 0.1 0.095 11.9 0.1 1.9 2 0 0 2 2 2 0 Thi4 family Pyr_redox_3 PF13738.6 gi|219851904|ref|YP_002466336.1| - 0.039 13.2 0.8 0.49 9.6 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TAP_C PF03943.13 gi|219851904|ref|YP_002466336.1| - 0.063 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 TAP C-terminal domain Lycopene_cycl PF05834.12 gi|219851904|ref|YP_002466336.1| - 0.081 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.22 gi|219851904|ref|YP_002466336.1| - 0.15 11.1 0.1 0.63 9.1 0.0 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A HHH PF00633.23 gi|219851904|ref|YP_002466336.1| - 0.27 11.2 1.6 2.9 7.9 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif TrmB PF01978.19 gi|219851905|ref|YP_002466337.1| - 4.2e-16 58.6 0.0 7.1e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|219851905|ref|YP_002466337.1| - 0.012 14.8 0.1 0.016 14.4 0.1 1.1 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_24 PF13412.6 gi|219851905|ref|YP_002466337.1| - 0.047 13.3 0.0 0.099 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|219851905|ref|YP_002466337.1| - 0.068 12.8 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|219851905|ref|YP_002466337.1| - 0.077 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 gi|219851905|ref|YP_002466337.1| - 0.077 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|219851905|ref|YP_002466337.1| - 0.13 12.2 0.1 1 9.4 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain zf-CDGSH PF09360.10 gi|219851906|ref|YP_002466338.1| - 6.3e-35 119.1 5.9 8e-17 61.2 1.1 2.6 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|219851906|ref|YP_002466338.1| - 1e-08 35.1 0.0 2.4e-08 33.9 0.0 1.7 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Rieske PF00355.26 gi|219851907|ref|YP_002466339.1| - 1.6e-16 60.0 0.0 2.5e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|219851907|ref|YP_002466339.1| - 9.6e-11 41.5 0.0 1.4e-10 41.0 0.0 1.3 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Linocin_M18 PF04454.12 gi|219851908|ref|YP_002466340.1| - 7.7e-77 258.0 0.0 8.9e-77 257.8 0.0 1.0 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Phage_capsid PF05065.13 gi|219851908|ref|YP_002466340.1| - 0.00028 20.3 0.1 0.00071 19.0 0.1 1.6 2 0 0 2 2 2 1 Phage capsid family DUF2184 PF09950.9 gi|219851908|ref|YP_002466340.1| - 0.0029 17.0 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2184) Rubrerythrin PF02915.17 gi|219851909|ref|YP_002466341.1| - 1.1e-05 25.8 0.2 1.4e-05 25.5 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|219851909|ref|YP_002466341.1| - 0.0028 18.0 0.1 0.0034 17.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|219851909|ref|YP_002466341.1| - 0.0037 17.0 0.2 0.0041 16.9 0.2 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.12 gi|219851909|ref|YP_002466341.1| - 0.015 14.3 1.1 0.092 11.7 0.8 1.8 1 1 1 2 2 2 0 Manganese containing catalase Cupredoxin_1 PF13473.6 gi|219851910|ref|YP_002466342.1| - 2.7e-11 43.5 0.1 4.8e-11 42.7 0.1 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|219851910|ref|YP_002466342.1| - 4.5e-06 27.0 0.2 9.2e-06 26.0 0.2 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.14 gi|219851910|ref|YP_002466342.1| - 0.0071 16.1 0.1 3.3 7.4 0.1 2.2 2 0 0 2 2 2 2 Multicopper oxidase PPC PF04151.15 gi|219851910|ref|YP_002466342.1| - 0.018 16.2 0.4 0.018 16.2 0.4 1.8 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain GSDH PF07995.11 gi|219851911|ref|YP_002466343.1| - 2.1e-37 129.2 0.0 3.9e-37 128.3 0.0 1.4 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase tRNA-synt_2c PF01411.19 gi|219851912|ref|YP_002466344.1| - 6.1e-122 407.9 0.0 7.6e-122 407.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|219851912|ref|YP_002466344.1| - 1.2e-12 47.7 1.8 2.9e-12 46.5 1.8 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|219851912|ref|YP_002466344.1| - 1.7e-12 47.9 0.3 4.2e-12 46.6 0.3 1.7 1 0 0 1 1 1 1 DHHA1 domain SWIM PF04434.17 gi|219851913|ref|YP_002466345.1| - 5.8e-08 32.2 0.8 9.7e-08 31.5 0.8 1.4 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.18 gi|219851914|ref|YP_002466346.1| - 1.5e-41 142.6 0.0 2e-41 142.2 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) HcyBio PF01837.16 gi|219851915|ref|YP_002466347.1| - 4.2e-142 473.1 0.3 5.5e-142 472.7 0.3 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|219851915|ref|YP_002466347.1| - 3.1e-19 69.2 1.1 1.2e-10 41.6 0.1 2.5 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.27 gi|219851916|ref|YP_002466348.1| - 2.6e-12 46.0 8.0 1e-07 31.4 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219851916|ref|YP_002466348.1| - 8.8e-09 35.1 9.6 2.4e-05 24.2 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219851916|ref|YP_002466348.1| - 2.6e-08 34.3 9.4 6.9e-08 33.0 9.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219851916|ref|YP_002466348.1| - 4.5e-08 33.1 7.0 8.3e-08 32.3 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219851916|ref|YP_002466348.1| - 1.2e-07 31.4 12.5 6.2e-06 26.0 1.5 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219851916|ref|YP_002466348.1| - 1.5e-07 31.5 22.3 5.8e-06 26.4 12.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219851916|ref|YP_002466348.1| - 3.6e-07 30.2 6.7 0.00017 21.6 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219851916|ref|YP_002466348.1| - 2.5e-06 28.3 7.8 0.0032 18.4 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219851916|ref|YP_002466348.1| - 2.9e-05 24.2 12.6 0.011 16.1 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219851916|ref|YP_002466348.1| - 3.5e-05 24.6 6.6 0.015 16.1 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.10 gi|219851916|ref|YP_002466348.1| - 0.002 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_13 PF13370.6 gi|219851916|ref|YP_002466348.1| - 0.0046 17.5 12.3 0.071 13.7 2.3 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|219851916|ref|YP_002466348.1| - 0.019 15.4 15.3 2.4 8.6 14.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219851916|ref|YP_002466348.1| - 0.025 15.1 15.1 0.056 14.0 4.6 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219851916|ref|YP_002466348.1| - 0.094 13.7 7.2 0.094 13.7 7.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219851916|ref|YP_002466348.1| - 0.22 11.7 10.9 3.1 8.0 10.8 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219851916|ref|YP_002466348.1| - 0.34 11.7 11.9 1.4 9.7 1.8 2.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain ApbE PF02424.15 gi|219851917|ref|YP_002466349.1| - 0.054 13.0 8.7 1.5 8.3 0.9 3.0 3 0 0 3 3 3 0 ApbE family PocR PF10114.9 gi|219851918|ref|YP_002466350.1| - 1.4e-45 155.0 0.9 1.1e-43 148.9 0.0 3.5 4 0 0 4 4 4 1 Sensory domain found in PocR PAS_9 PF13426.7 gi|219851918|ref|YP_002466350.1| - 2.4e-44 149.9 0.0 1e-13 51.4 0.0 5.8 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.10 gi|219851918|ref|YP_002466350.1| - 2.4e-43 146.9 4.3 1.4e-12 47.8 0.0 5.8 6 0 0 6 6 5 5 PAS fold PAS PF00989.25 gi|219851918|ref|YP_002466350.1| - 4.1e-30 104.1 0.1 1.7e-12 47.3 0.0 5.6 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|219851918|ref|YP_002466350.1| - 1.6e-22 79.0 0.0 2.3e-06 27.5 0.0 5.0 5 0 0 5 5 4 4 PAS domain Response_reg PF00072.24 gi|219851918|ref|YP_002466350.1| - 5.1e-22 78.2 0.0 1.7e-21 76.5 0.0 1.9 2 0 0 2 2 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|219851918|ref|YP_002466350.1| - 1.8e-16 60.2 0.0 0.0004 20.6 0.0 5.9 5 0 0 5 5 5 2 PAS fold HATPase_c PF02518.26 gi|219851918|ref|YP_002466350.1| - 2.4e-05 24.8 0.1 0.00014 22.3 0.1 2.4 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|219851918|ref|YP_002466350.1| - 6.5e-05 23.1 0.9 3.4 7.8 0.0 6.1 5 2 0 5 5 5 1 PAS fold SHE3 PF17078.5 gi|219851918|ref|YP_002466350.1| - 0.018 14.7 13.5 0.15 11.8 2.8 2.6 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 DHR10 PF18595.1 gi|219851918|ref|YP_002466350.1| - 0.04 14.0 17.4 0.38 10.8 4.3 3.0 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Neurochondrin PF05536.11 gi|219851918|ref|YP_002466350.1| - 0.12 10.7 0.2 0.18 10.1 0.2 1.1 1 0 0 1 1 1 0 Neurochondrin HisKA_2 PF07568.12 gi|219851918|ref|YP_002466350.1| - 0.15 12.1 1.2 1.5 8.9 0.0 2.9 2 0 0 2 2 2 0 Histidine kinase GAS PF13851.6 gi|219851918|ref|YP_002466350.1| - 0.22 10.9 12.8 0.48 9.7 1.7 2.7 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding HALZ PF02183.18 gi|219851918|ref|YP_002466350.1| - 2.2 8.6 9.4 4.8 7.5 2.2 3.3 2 1 1 3 3 3 0 Homeobox associated leucine zipper UPF0449 PF15136.6 gi|219851918|ref|YP_002466350.1| - 3.1 8.3 6.8 17 5.9 0.3 2.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 ZapB PF06005.12 gi|219851918|ref|YP_002466350.1| - 7.6 7.1 18.3 2.8 8.4 5.6 3.1 2 0 0 2 2 2 0 Cell division protein ZapB Spc7 PF08317.11 gi|219851918|ref|YP_002466350.1| - 9.2 5.0 15.2 1.4 7.7 4.3 2.5 2 0 0 2 2 2 0 Spc7 kinetochore protein LMBR1 PF04791.16 gi|219851918|ref|YP_002466350.1| - 9.9 4.9 5.9 13 4.5 1.7 2.1 2 0 0 2 2 2 0 LMBR1-like membrane protein Asn_synthase PF00733.21 gi|219851920|ref|YP_002466352.1| - 3.5e-38 132.2 1.3 1.8e-24 87.1 0.5 2.0 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|219851920|ref|YP_002466352.1| - 0.0099 15.0 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|219851920|ref|YP_002466352.1| - 0.08 12.4 0.7 0.53 9.8 0.1 2.1 1 1 1 2 2 2 0 Queuosine biosynthesis protein QueC Pdase_C33_assoc PF14756.6 gi|219851920|ref|YP_002466352.1| - 0.085 12.8 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase_C33-associated domain Glu-tRNAGln PF02686.15 gi|219851921|ref|YP_002466353.1| - 1.5e-12 47.6 0.0 2.4e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF4089 PF13318.6 gi|219851921|ref|YP_002466353.1| - 0.0035 17.8 0.0 0.0047 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4089) DUF2420 PF10336.9 gi|219851921|ref|YP_002466353.1| - 0.01 15.8 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) Amidase PF01425.21 gi|219851922|ref|YP_002466354.1| - 2.8e-148 494.6 0.6 3.4e-148 494.4 0.6 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|219851923|ref|YP_002466355.1| - 3.8e-102 341.3 0.0 5.4e-102 340.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|219851923|ref|YP_002466355.1| - 2.2e-32 112.0 0.0 3.3e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 GatB domain Topoisom_bac PF01131.20 gi|219851924|ref|YP_002466356.1| - 1.8e-114 383.0 0.0 2.5e-114 382.5 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase HHH_5 PF14520.6 gi|219851924|ref|YP_002466356.1| - 6e-16 58.8 0.7 5.9e-05 23.6 0.1 4.6 4 0 0 4 4 4 3 Helix-hairpin-helix domain Toprim PF01751.22 gi|219851924|ref|YP_002466356.1| - 7.6e-15 55.0 0.2 1.7e-14 53.9 0.2 1.6 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|219851924|ref|YP_002466356.1| - 1.9e-09 37.2 0.5 4.7e-09 35.9 0.5 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger DUF3322 PF11795.8 gi|219851924|ref|YP_002466356.1| - 0.015 15.3 0.1 0.041 13.9 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) ALIX_LYPXL_bnd PF13949.6 gi|219851924|ref|YP_002466356.1| - 0.026 13.9 0.6 0.046 13.0 0.6 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Cdd1 PF11731.8 gi|219851924|ref|YP_002466356.1| - 0.046 14.0 0.0 23 5.3 0.0 3.6 3 0 0 3 3 3 0 Pathogenicity locus Toprim_4 PF13662.6 gi|219851924|ref|YP_002466356.1| - 0.054 14.0 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 Toprim domain PcrB PF01884.17 gi|219851925|ref|YP_002466357.1| - 3.1e-62 210.0 0.0 3.7e-62 209.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|219851925|ref|YP_002466357.1| - 0.065 12.1 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain B12-binding PF02310.19 gi|219851925|ref|YP_002466357.1| - 0.086 12.9 0.0 9.3 6.3 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain SpoU_methylase PF00588.19 gi|219851926|ref|YP_002466358.1| - 6.8e-29 100.9 0.0 8.9e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family dUTPase PF00692.19 gi|219851927|ref|YP_002466359.1| - 4.3e-12 45.8 0.0 7.2e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|219851927|ref|YP_002466359.1| - 8.6e-12 44.5 0.0 4.3e-11 42.2 0.0 1.8 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) tRNA-Thr_ED PF08915.11 gi|219851928|ref|YP_002466360.1| - 4.9e-51 172.4 0.1 7.8e-51 171.7 0.1 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|219851928|ref|YP_002466360.1| - 6.7e-20 71.1 0.2 1.2e-19 70.2 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|219851928|ref|YP_002466360.1| - 8.3e-15 55.2 0.0 3.3e-14 53.3 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) B12-binding PF02310.19 gi|219851929|ref|YP_002466361.1| - 1.8e-14 53.8 0.2 3e-14 53.1 0.2 1.3 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.11 gi|219851929|ref|YP_002466361.1| - 0.047 12.4 0.0 0.058 12.1 0.0 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) B12-binding_2 PF02607.17 gi|219851929|ref|YP_002466361.1| - 0.14 12.6 1.0 0.21 12.0 0.3 1.6 2 0 0 2 2 2 0 B12 binding domain URO-D PF01208.17 gi|219851930|ref|YP_002466362.1| - 2.8e-72 243.8 0.0 3.1e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RACo_C_ter PF14574.6 gi|219851931|ref|YP_002466363.1| - 2.6e-69 233.2 0.0 6.2e-69 231.9 0.0 1.6 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|219851931|ref|YP_002466363.1| - 2.4e-31 108.6 0.0 4.3e-30 104.6 0.0 2.2 2 0 0 2 2 2 1 RACo middle region Fer2 PF00111.27 gi|219851931|ref|YP_002466363.1| - 2.7e-11 43.2 0.2 5.7e-11 42.2 0.2 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain GAF_2 PF13185.6 gi|219851932|ref|YP_002466364.1| - 6.1e-54 182.1 0.0 1e-27 97.1 0.0 3.3 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.7 gi|219851932|ref|YP_002466364.1| - 2.5e-40 136.9 1.9 7.3e-12 45.5 0.1 4.8 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219851932|ref|YP_002466364.1| - 1.9e-28 98.7 0.3 2.6e-09 37.1 0.0 5.0 5 0 0 5 5 4 3 PAS fold PAS_8 PF13188.7 gi|219851932|ref|YP_002466364.1| - 2.3e-26 91.3 0.0 7.3e-05 22.7 0.0 5.0 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|219851932|ref|YP_002466364.1| - 1.6e-19 70.0 0.1 1.8e-07 31.3 0.0 4.5 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.10 gi|219851932|ref|YP_002466364.1| - 9.8e-15 54.8 0.1 0.00054 20.2 0.0 5.0 6 0 0 6 6 6 3 PAS fold HATPase_c PF02518.26 gi|219851932|ref|YP_002466364.1| - 1.4e-12 48.1 0.1 3.5e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|219851932|ref|YP_002466364.1| - 9.6e-09 36.0 0.1 0.0053 17.4 0.0 4.1 4 0 0 4 4 4 2 GAF domain PAS_7 PF12860.7 gi|219851932|ref|YP_002466364.1| - 0.00062 19.9 0.4 0.03 14.5 0.0 3.5 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 gi|219851932|ref|YP_002466364.1| - 0.0069 16.3 0.0 0.021 14.7 0.0 1.8 1 0 0 1 1 1 1 GHKL domain ZapA PF05164.13 gi|219851932|ref|YP_002466364.1| - 0.026 14.9 1.2 0.067 13.6 0.1 2.3 2 0 0 2 2 1 0 Cell division protein ZapA HATPase_c_3 PF13589.6 gi|219851932|ref|YP_002466364.1| - 0.031 14.1 0.0 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1845 PF08900.11 gi|219851932|ref|YP_002466364.1| - 0.15 11.8 0.0 4.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1845) PEP-utilisers_N PF05524.13 gi|219851932|ref|YP_002466364.1| - 2.6 8.3 4.8 74 3.5 0.3 3.9 4 0 0 4 4 4 0 PEP-utilising enzyme, N-terminal MFS_MOT1 PF16983.5 gi|219851933|ref|YP_002466365.1| - 2.9e-42 143.6 27.9 7.7e-23 81.0 11.4 3.5 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily DUF5440 PF17509.2 gi|219851933|ref|YP_002466365.1| - 0.022 14.3 0.1 0.05 13.2 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5440) BcrAD_BadFG PF01869.20 gi|219851934|ref|YP_002466366.1| - 1.9e-61 207.9 4.9 2.2e-61 207.7 4.9 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.25 gi|219851934|ref|YP_002466366.1| - 0.00088 19.0 0.0 0.006 16.3 0.0 2.0 2 0 0 2 2 2 1 Glycoprotease family FtsA PF14450.6 gi|219851934|ref|YP_002466366.1| - 0.015 15.7 2.4 0.87 10.0 0.1 2.9 2 1 0 2 2 2 0 Cell division protein FtsA HGD-D PF06050.13 gi|219851935|ref|YP_002466367.1| - 3.6e-85 286.6 0.0 4.1e-85 286.4 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component DUF1847 PF08901.11 gi|219851935|ref|YP_002466367.1| - 0.075 12.7 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1847) PqqD PF05402.12 gi|219851935|ref|YP_002466367.1| - 0.14 12.5 0.6 16 5.9 0.1 3.9 3 1 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) SdrD_B PF17210.3 gi|219851936|ref|YP_002466368.1| - 7.6 6.8 9.3 0.13 12.5 1.1 2.0 2 1 0 2 2 2 0 SdrD B-like domain RibD_C PF01872.17 gi|219851937|ref|YP_002466369.1| - 8.5e-55 185.7 0.2 9.6e-55 185.5 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF3739 PF12545.8 gi|219851937|ref|YP_002466369.1| - 0.043 14.3 0.0 0.078 13.5 0.0 1.5 1 0 0 1 1 1 0 Filamentous haemagglutinin family outer membrane protein ThiF PF00899.21 gi|219851938|ref|YP_002466370.1| - 7.8e-61 205.5 0.0 9.3e-61 205.3 0.0 1.0 1 0 0 1 1 1 1 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|219851938|ref|YP_002466370.1| - 0.0081 15.8 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PALP PF00291.25 gi|219851938|ref|YP_002466370.1| - 0.014 14.9 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Sacchrp_dh_NADP PF03435.18 gi|219851938|ref|YP_002466370.1| - 0.024 14.9 0.2 0.05 13.9 0.2 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|219851938|ref|YP_002466370.1| - 0.027 14.4 0.1 0.036 14.0 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|219851938|ref|YP_002466370.1| - 0.11 12.1 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA EII-GUT PF03608.13 gi|219851938|ref|YP_002466370.1| - 0.12 12.2 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 PTS system enzyme II sorbitol-specific factor 2-Hacid_dh_C PF02826.19 gi|219851938|ref|YP_002466370.1| - 0.22 10.9 0.0 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|219851938|ref|YP_002466370.1| - 1.2 8.6 5.8 1.1 8.7 3.4 1.9 1 1 0 2 2 2 0 FAD dependent oxidoreductase ThiS PF02597.20 gi|219851939|ref|YP_002466371.1| - 2e-14 54.0 0.3 2.2e-14 53.8 0.3 1.0 1 0 0 1 1 1 1 ThiS family NPR2 PF06218.11 gi|219851939|ref|YP_002466371.1| - 0.02 13.7 0.0 0.02 13.7 0.0 1.0 1 0 0 1 1 1 0 Nitrogen permease regulator 2 UPF0181 PF03701.14 gi|219851939|ref|YP_002466371.1| - 0.039 13.6 0.2 0.36 10.5 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0181) MoaE PF02391.17 gi|219851940|ref|YP_002466372.1| - 2.9e-32 111.3 0.7 3.5e-32 111.0 0.7 1.1 1 0 0 1 1 1 1 MoaE protein DisA_N PF02457.16 gi|219851941|ref|YP_002466373.1| - 2e-20 72.6 0.3 3.4e-20 71.8 0.3 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PKD PF00801.20 gi|219851941|ref|YP_002466373.1| - 0.0069 16.2 0.6 0.0069 16.2 0.6 3.7 5 0 0 5 5 5 2 PKD domain zinc_ribbon_2 PF13240.6 gi|219851942|ref|YP_002466374.1| - 0.0004 20.0 1.1 0.56 10.0 0.0 2.7 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|219851942|ref|YP_002466374.1| - 0.00041 20.0 1.5 0.00082 19.0 1.5 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.11 gi|219851942|ref|YP_002466374.1| - 0.00081 19.3 2.4 0.0011 18.9 2.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|219851942|ref|YP_002466374.1| - 0.0019 18.1 6.5 0.37 10.8 0.1 3.2 4 1 0 4 4 4 2 Nudix N-terminal DUF2116 PF09889.9 gi|219851942|ref|YP_002466374.1| - 0.003 17.5 6.3 0.08 12.9 1.7 2.3 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-NADH-PPase PF09297.11 gi|219851942|ref|YP_002466374.1| - 0.0032 17.1 5.1 0.0035 17.0 3.0 2.2 1 1 1 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|219851942|ref|YP_002466374.1| - 0.0036 17.3 3.4 0.0067 16.4 3.4 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.6 gi|219851942|ref|YP_002466374.1| - 0.0097 15.5 2.9 0.13 11.9 0.1 2.4 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding RecR PF02132.15 gi|219851942|ref|YP_002466374.1| - 0.012 15.2 5.6 0.95 9.1 1.9 2.4 2 0 0 2 2 2 0 RecR protein Zn-ribbon_8 PF09723.10 gi|219851942|ref|YP_002466374.1| - 0.016 15.3 1.5 0.019 15.1 0.4 1.8 2 0 0 2 2 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|219851942|ref|YP_002466374.1| - 0.035 13.5 7.9 0.94 9.0 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|219851942|ref|YP_002466374.1| - 0.043 13.5 1.5 0.094 12.4 1.5 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 gi|219851942|ref|YP_002466374.1| - 0.094 12.7 10.1 0.22 11.5 10.1 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.12 gi|219851942|ref|YP_002466374.1| - 0.21 11.8 10.1 1.7 8.9 0.3 2.6 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.9 gi|219851942|ref|YP_002466374.1| - 0.23 11.5 0.5 0.23 11.5 0.5 3.0 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.6 gi|219851942|ref|YP_002466374.1| - 1 9.8 6.7 2 8.8 6.7 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|219851942|ref|YP_002466374.1| - 1.4 8.7 9.0 4 7.3 4.1 2.9 2 1 1 3 3 3 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|219851942|ref|YP_002466374.1| - 3.3 7.9 9.6 9.9 6.4 2.6 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DHHC PF01529.20 gi|219851942|ref|YP_002466374.1| - 3.7 7.7 10.5 6 7.0 9.8 1.7 1 1 1 2 2 2 0 DHHC palmitoyltransferase YhfH PF14149.6 gi|219851942|ref|YP_002466374.1| - 8.7 6.4 9.1 1.6 8.8 0.5 2.5 1 1 1 2 2 2 0 YhfH-like protein AMP-binding PF00501.28 gi|219851943|ref|YP_002466375.1| - 5.4e-93 311.9 0.2 7e-93 311.5 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|219851943|ref|YP_002466375.1| - 1.7e-27 96.2 0.5 1e-26 93.7 0.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|219851943|ref|YP_002466375.1| - 1.3e-23 82.7 4.0 3.5e-23 81.3 4.0 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Linocin_M18 PF04454.12 gi|219851943|ref|YP_002466375.1| - 0.075 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Encapsulating protein for peroxidase TBP PF00352.21 gi|219851944|ref|YP_002466376.1| - 4.4e-53 177.2 0.0 4.9e-26 90.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|219851944|ref|YP_002466376.1| - 2.6e-06 27.4 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) EPSP_synthase PF00275.20 gi|219851944|ref|YP_002466376.1| - 0.0051 15.5 0.0 0.0064 15.2 0.0 1.2 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NdhS PF11623.8 gi|219851944|ref|YP_002466376.1| - 0.076 12.7 0.0 14 5.4 0.0 2.8 3 0 0 3 3 3 0 NAD(P)H dehydrogenase subunit S PBP PF01161.20 gi|219851945|ref|YP_002466377.1| - 1.9e-26 92.9 0.0 2.3e-26 92.7 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PBP PF01161.20 gi|219851946|ref|YP_002466378.1| - 4.1e-19 69.2 0.0 4.7e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Radical_SAM PF04055.21 gi|219851947|ref|YP_002466379.1| - 2.3e-20 73.6 0.8 3.5e-20 73.0 0.8 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|219851947|ref|YP_002466379.1| - 4.8e-07 29.8 0.2 1.9e-05 24.7 0.0 2.8 2 1 0 2 2 2 1 B12 binding domain zf-CHCC PF10276.9 gi|219851947|ref|YP_002466379.1| - 0.41 10.7 5.3 0.29 11.2 0.9 2.4 2 0 0 2 2 2 0 Zinc-finger domain Metallophos_2 PF12850.7 gi|219851948|ref|YP_002466380.1| - 9.2e-16 58.5 0.1 1.7e-15 57.6 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|219851948|ref|YP_002466380.1| - 4.8e-13 50.1 0.3 8e-13 49.3 0.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|219851948|ref|YP_002466380.1| - 2.2e-09 37.0 0.7 3.4e-07 29.9 0.1 2.6 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily CheW PF01584.19 gi|219851949|ref|YP_002466381.1| - 2e-25 89.0 2.2 2.4e-25 88.8 2.2 1.1 1 0 0 1 1 1 1 CheW-like domain DUF1614 PF07758.11 gi|219851949|ref|YP_002466381.1| - 0.028 14.4 0.1 0.032 14.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1614) CheR PF01739.18 gi|219851950|ref|YP_002466382.1| - 2.7e-49 167.3 0.0 4.1e-49 166.7 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain TPR_19 PF14559.6 gi|219851950|ref|YP_002466382.1| - 1e-11 45.1 0.2 1.1e-07 32.3 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219851950|ref|YP_002466382.1| - 2.4e-11 42.8 0.5 0.16 12.1 0.0 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219851950|ref|YP_002466382.1| - 1.2e-10 41.9 1.5 0.00029 21.4 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219851950|ref|YP_002466382.1| - 1.3e-07 31.3 0.7 0.044 14.0 0.0 4.0 5 0 0 5 5 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219851950|ref|YP_002466382.1| - 5.2e-06 26.1 0.6 0.54 10.2 0.0 4.2 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219851950|ref|YP_002466382.1| - 9.2e-06 25.7 0.1 0.12 12.8 0.0 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219851950|ref|YP_002466382.1| - 1.7e-05 25.0 1.7 3.6 8.0 0.5 3.7 2 1 1 3 3 3 3 Tetratricopeptide repeat Methyltransf_12 PF08242.12 gi|219851950|ref|YP_002466382.1| - 1.7e-05 25.5 0.0 0.0018 19.0 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain ANAPC3 PF12895.7 gi|219851950|ref|YP_002466382.1| - 2.9e-05 24.2 0.0 5.6e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 Methyltransf_23 PF13489.6 gi|219851950|ref|YP_002466382.1| - 9.6e-05 22.3 0.0 0.0011 18.8 0.0 2.4 2 1 1 3 3 3 1 Methyltransferase domain TPR_14 PF13428.6 gi|219851950|ref|YP_002466382.1| - 0.00013 22.5 3.4 2.8 9.0 0.0 4.4 2 1 2 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|219851950|ref|YP_002466382.1| - 0.00014 22.1 0.5 0.03 14.9 0.2 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219851950|ref|YP_002466382.1| - 0.00014 21.4 0.1 0.0056 16.3 0.2 3.2 3 1 1 4 4 4 1 TPR repeat TPR_10 PF13374.6 gi|219851950|ref|YP_002466382.1| - 0.0077 16.1 6.0 0.94 9.4 0.2 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat Methyltransf_25 PF13649.6 gi|219851950|ref|YP_002466382.1| - 0.0097 16.6 0.0 0.23 12.2 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain TPR_9 PF13371.6 gi|219851950|ref|YP_002466382.1| - 0.023 14.9 0.3 0.023 14.9 0.3 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|219851950|ref|YP_002466382.1| - 0.065 12.6 1.0 0.63 9.4 0.1 2.3 1 1 1 2 2 2 0 MalT-like TPR region TPR_20 PF14561.6 gi|219851950|ref|YP_002466382.1| - 0.083 13.2 0.3 32 5.0 0.0 3.2 1 1 2 3 3 3 0 Tetratricopeptide repeat CheW PF01584.19 gi|219851951|ref|YP_002466383.1| - 9.5e-31 106.3 0.1 1.2e-30 105.9 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain 4HB_MCP_1 PF12729.7 gi|219851952|ref|YP_002466384.1| - 6.2e-41 139.9 1.4 6.2e-41 139.9 1.4 3.6 3 1 2 5 5 5 1 Four helix bundle sensory module for signal transduction MCPsignal PF00015.21 gi|219851952|ref|YP_002466384.1| - 2e-32 112.3 26.0 2e-32 112.3 26.0 3.7 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain TarH PF02203.15 gi|219851952|ref|YP_002466384.1| - 2e-13 50.6 0.1 2e-13 50.6 0.1 3.7 3 1 1 4 4 4 1 Tar ligand binding domain homologue HAMP PF00672.25 gi|219851952|ref|YP_002466384.1| - 1.8e-08 34.7 3.8 1.7e-07 31.5 0.8 3.3 3 0 0 3 3 3 1 HAMP domain Pepsin-I3 PF06394.13 gi|219851952|ref|YP_002466384.1| - 0.098 12.9 0.2 0.38 11.0 0.2 2.0 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain AI-2E_transport PF01594.16 gi|219851952|ref|YP_002466384.1| - 0.15 11.1 5.6 2.2 7.3 0.2 2.9 2 1 2 4 4 4 0 AI-2E family transporter T4bSS_IcmS PF12608.8 gi|219851952|ref|YP_002466384.1| - 0.16 12.3 2.9 0.29 11.5 0.2 2.5 2 0 0 2 2 2 0 Type IVb secretion, IcmS, effector-recruitment Serine_rich PF08824.10 gi|219851952|ref|YP_002466384.1| - 2 8.4 8.1 1.5 8.8 0.6 3.6 3 1 0 3 3 3 0 Serine rich protein interaction domain TrbL PF04610.14 gi|219851952|ref|YP_002466384.1| - 2.1 8.0 12.9 0.088 12.5 0.6 3.1 3 0 0 3 3 3 0 TrbL/VirB6 plasmid conjugal transfer protein BLOC1_2 PF10046.9 gi|219851952|ref|YP_002466384.1| - 8.8 6.7 19.9 1.9 8.8 0.7 5.4 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Response_reg PF00072.24 gi|219851953|ref|YP_002466385.1| - 7e-25 87.4 0.1 1.7e-24 86.2 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 gi|219851953|ref|YP_002466385.1| - 7.7e-20 70.9 0.8 1.7e-19 69.8 0.8 1.6 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|219851953|ref|YP_002466385.1| - 8.4e-15 55.3 0.1 2e-14 54.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|219851953|ref|YP_002466385.1| - 8.2e-14 51.6 0.5 8.2e-14 51.6 0.5 2.9 3 0 0 3 3 3 1 Hpt domain HATPase_c_3 PF13589.6 gi|219851953|ref|YP_002466385.1| - 0.0066 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Op_neuropeptide PF08035.11 gi|219851953|ref|YP_002466385.1| - 0.034 14.0 0.0 1.3 8.9 0.0 2.7 2 0 0 2 2 2 0 Opioids neuropeptide HATPase_c_2 PF13581.6 gi|219851953|ref|YP_002466385.1| - 0.071 13.1 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Blo-t-5 PF11642.8 gi|219851953|ref|YP_002466385.1| - 0.59 10.1 4.7 0.39 10.7 0.3 2.6 3 0 0 3 3 3 0 Mite allergen Blo t 5 CheB_methylest PF01339.17 gi|219851954|ref|YP_002466386.1| - 1.9e-51 174.2 0.0 3.6e-51 173.3 0.0 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|219851954|ref|YP_002466386.1| - 7.2e-20 71.2 0.0 3.1e-19 69.2 0.0 1.9 2 1 0 2 2 2 1 Response regulator receiver domain Response_reg PF00072.24 gi|219851955|ref|YP_002466387.1| - 2.6e-29 101.6 0.1 7.6e-29 100.1 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219851955|ref|YP_002466387.1| - 2.3e-18 66.7 0.2 5.1e-18 65.6 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|219851955|ref|YP_002466387.1| - 1.3e-11 45.0 0.0 4.3e-11 43.3 0.0 1.9 1 1 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|219851955|ref|YP_002466387.1| - 2.7e-10 40.7 0.0 6.8e-10 39.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|219851955|ref|YP_002466387.1| - 2.3e-08 34.7 0.0 4.9e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|219851955|ref|YP_002466387.1| - 3.7e-06 26.9 0.5 2.5e-05 24.2 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|219851955|ref|YP_002466387.1| - 6.6e-05 22.9 0.0 0.00015 21.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|219851955|ref|YP_002466387.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CNOT11 PF10155.9 gi|219851955|ref|YP_002466387.1| - 0.45 10.7 2.5 0.4 10.9 0.2 2.0 2 0 0 2 2 2 0 CCR4-NOT transcription complex subunit 11 Vps16_N PF04841.13 gi|219851956|ref|YP_002466388.1| - 0.018 13.8 0.1 0.02 13.7 0.1 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region DUF262 PF03235.14 gi|219851957|ref|YP_002466389.1| - 7.8e-34 117.8 2.5 1.4e-33 116.9 2.5 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|219851957|ref|YP_002466389.1| - 2.3e-26 92.3 0.0 4e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) RST PF12174.8 gi|219851957|ref|YP_002466389.1| - 0.092 12.7 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain PAS_9 PF13426.7 gi|219851959|ref|YP_002466391.1| - 1e-69 231.3 0.3 2.1e-12 47.2 0.0 6.7 6 0 0 6 6 6 6 PAS domain PAS PF00989.25 gi|219851959|ref|YP_002466391.1| - 6.2e-62 206.6 4.2 1.6e-12 47.4 0.0 7.0 7 1 0 7 7 7 6 PAS fold PAS_4 PF08448.10 gi|219851959|ref|YP_002466391.1| - 6.1e-58 193.8 0.2 9.7e-13 48.3 0.0 8.1 6 3 0 6 6 6 6 PAS fold PAS_3 PF08447.12 gi|219851959|ref|YP_002466391.1| - 1.5e-44 150.2 3.8 1.9e-10 40.9 0.1 7.4 6 1 0 6 6 6 6 PAS fold PAS_8 PF13188.7 gi|219851959|ref|YP_002466391.1| - 1.6e-34 117.4 0.0 3.5e-06 26.9 0.0 6.6 6 0 0 6 6 6 6 PAS domain Response_reg PF00072.24 gi|219851959|ref|YP_002466391.1| - 1.8e-21 76.4 0.0 5.6e-21 74.8 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|219851959|ref|YP_002466391.1| - 1.7e-17 64.0 0.0 1.4e-15 57.8 0.0 3.3 3 1 0 3 3 3 1 GAF domain dCache_1 PF02743.18 gi|219851959|ref|YP_002466391.1| - 7.2e-11 42.4 1.6 0.0031 17.3 0.0 3.6 3 0 0 3 3 3 3 Cache domain PAS_7 PF12860.7 gi|219851959|ref|YP_002466391.1| - 5.5e-08 33.0 5.2 1.7 8.8 0.0 7.8 9 0 0 9 9 9 2 PAS fold MLTR_LBD PF17765.1 gi|219851959|ref|YP_002466391.1| - 3.1e-05 24.2 0.0 0.38 10.9 0.0 3.6 3 0 0 3 3 3 2 MmyB-like transcription regulator ligand binding domain IclR PF01614.18 gi|219851959|ref|YP_002466391.1| - 7.6e-05 22.6 0.5 0.016 15.0 0.0 3.5 3 0 0 3 3 3 1 Bacterial transcriptional regulator DUF1366 PF07104.11 gi|219851959|ref|YP_002466391.1| - 0.005 16.5 0.4 1 9.1 0.0 3.7 4 0 0 4 4 4 1 Protein of unknown function (DUF1366) PAS_10 PF13596.6 gi|219851959|ref|YP_002466391.1| - 0.0084 16.7 2.7 3.5 8.3 0.0 5.8 7 1 0 7 7 7 1 PAS domain SHE3 PF17078.5 gi|219851959|ref|YP_002466391.1| - 0.018 14.8 0.6 0.066 12.9 0.6 1.9 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 GAF PF01590.26 gi|219851959|ref|YP_002466391.1| - 0.023 15.3 0.0 0.11 13.1 0.0 2.3 3 0 0 3 3 1 0 GAF domain GAF_3 PF13492.6 gi|219851959|ref|YP_002466391.1| - 0.029 14.7 0.0 0.068 13.5 0.0 1.6 1 0 0 1 1 1 0 GAF domain HAS-barrel PF09378.10 gi|219851959|ref|YP_002466391.1| - 0.049 13.8 0.0 4.4 7.5 0.0 3.5 2 1 0 2 2 2 0 HAS barrel domain Pectate_lyase_3 PF12708.7 gi|219851960|ref|YP_002466392.1| - 1.1e-37 129.9 5.3 1.1e-37 129.9 5.3 2.7 3 0 0 3 3 3 1 Pectate lyase superfamily protein PKD PF00801.20 gi|219851960|ref|YP_002466392.1| - 1.3e-13 50.6 3.2 1.3e-13 50.6 3.2 2.3 2 0 0 2 2 2 1 PKD domain Beta_helix PF13229.6 gi|219851960|ref|YP_002466392.1| - 5e-13 49.2 23.7 4.8e-09 36.3 12.4 3.0 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|219851960|ref|YP_002466392.1| - 4.8e-09 35.9 13.8 7.3e-06 25.4 7.6 2.6 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) End_N_terminal PF12218.8 gi|219851960|ref|YP_002466392.1| - 0.0015 18.2 0.0 0.0047 16.6 0.0 1.9 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase B_solenoid_ydck PF18836.1 gi|219851960|ref|YP_002466392.1| - 0.047 13.5 0.3 0.18 11.7 0.3 2.1 1 0 0 1 1 1 0 Beta solenoid repeat from YDCK SAP130_C PF16014.5 gi|219851960|ref|YP_002466392.1| - 1.5 7.8 16.1 0.73 8.9 13.9 1.5 2 0 0 2 2 2 0 Histone deacetylase complex subunit SAP130 C-terminus UbiA PF01040.18 gi|219851962|ref|YP_002466394.1| - 1.1e-38 133.0 20.6 1.3e-38 132.7 20.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF417 PF04224.12 gi|219851962|ref|YP_002466394.1| - 0.0083 15.7 2.8 0.42 10.1 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function, DUF417 DUF1772 PF08592.11 gi|219851962|ref|YP_002466394.1| - 0.06 13.7 8.4 0.044 14.1 4.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) CBM_6 PF03422.15 gi|219851966|ref|YP_002466398.1| - 1.7e-34 118.8 1.2 1.1e-18 67.7 0.1 3.1 2 0 0 2 2 2 2 Carbohydrate binding module (family 6) NosD PF05048.13 gi|219851966|ref|YP_002466398.1| - 1e-33 116.6 18.7 4.8e-29 101.3 12.8 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219851966|ref|YP_002466398.1| - 7.3e-23 81.1 34.6 9.7e-12 45.0 3.8 2.9 2 1 2 4 4 4 3 Right handed beta helix region DUF5010_C PF18099.1 gi|219851966|ref|YP_002466398.1| - 5.2e-18 65.2 0.4 1.1e-10 41.6 0.1 2.5 2 0 0 2 2 2 2 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219851966|ref|YP_002466398.1| - 0.0013 19.0 0.1 0.0068 16.7 0.0 2.1 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) Dockerin_1 PF00404.18 gi|219851966|ref|YP_002466398.1| - 0.0065 16.6 2.0 0.012 15.7 0.7 2.2 1 1 0 1 1 1 1 Dockerin type I domain Pectate_lyase_3 PF12708.7 gi|219851966|ref|YP_002466398.1| - 0.61 9.9 18.7 3.6 7.4 0.5 3.2 2 1 1 3 3 3 0 Pectate lyase superfamily protein CBM_6 PF03422.15 gi|219851968|ref|YP_002466400.1| - 1e-52 177.7 8.0 5.9e-20 71.8 0.4 3.7 3 0 0 3 3 3 3 Carbohydrate binding module (family 6) NosD PF05048.13 gi|219851968|ref|YP_002466400.1| - 5.1e-31 107.8 20.6 7e-27 94.2 12.6 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219851968|ref|YP_002466400.1| - 6.8e-26 91.0 37.1 2.6e-13 50.1 8.8 2.3 1 1 2 3 3 3 3 Right handed beta helix region DUF5010_C PF18099.1 gi|219851968|ref|YP_002466400.1| - 4e-25 88.1 2.8 4e-09 36.6 0.1 3.6 3 0 0 3 3 3 3 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219851968|ref|YP_002466400.1| - 6.4e-08 32.9 2.8 0.0053 17.0 0.1 3.3 3 0 0 3 3 3 2 Carbohydrate binding module (family 35) Endotoxin_C PF03944.14 gi|219851968|ref|YP_002466400.1| - 0.033 14.5 0.0 4.3 7.7 0.0 3.2 3 0 0 3 3 3 0 delta endotoxin CarboxypepD_reg PF13620.6 gi|219851968|ref|YP_002466400.1| - 4 7.8 9.4 3.9 7.8 0.0 4.9 4 2 1 5 5 5 0 Carboxypeptidase regulatory-like domain NHL PF01436.21 gi|219851969|ref|YP_002466401.1| - 8.4e-105 337.9 43.8 5.6e-11 41.9 0.1 12.5 12 0 0 12 12 12 12 NHL repeat SBBP PF06739.11 gi|219851969|ref|YP_002466401.1| - 1.5e-40 136.9 55.1 0.00075 19.5 0.1 12.7 12 0 0 12 12 12 12 Beta-propeller repeat DUF5128 PF17170.4 gi|219851969|ref|YP_002466401.1| - 4.5e-35 121.4 27.0 1.2e-09 37.9 0.8 7.9 3 2 7 10 10 10 9 6-bladed beta-propeller SGL PF08450.12 gi|219851969|ref|YP_002466401.1| - 7.7e-32 110.8 29.0 3.1e-08 33.5 1.2 9.4 1 1 4 7 7 7 6 SMP-30/Gluconolactonase/LRE-like region SdiA-regulated PF06977.11 gi|219851969|ref|YP_002466401.1| - 3.3e-16 59.3 10.2 0.42 9.8 0.0 10.7 10 2 1 11 11 11 3 SdiA-regulated Phytase-like PF13449.6 gi|219851969|ref|YP_002466401.1| - 9.8e-15 55.2 4.2 0.091 12.7 0.1 9.2 4 3 1 6 6 6 4 Esterase-like activity of phytase Cytotoxic PF09000.10 gi|219851969|ref|YP_002466401.1| - 1.8e-08 34.6 2.6 33 4.9 0.0 8.9 7 2 4 11 11 10 0 Cytotoxic US22 PF02393.16 gi|219851969|ref|YP_002466401.1| - 5.2e-08 33.2 1.1 42 4.4 0.0 8.7 11 1 0 11 11 9 0 US22 like Reg_prop PF07494.11 gi|219851969|ref|YP_002466401.1| - 1.6e-06 27.6 3.5 75 4.1 0.0 9.2 10 0 0 10 10 8 0 Two component regulator propeller MRJP PF03022.16 gi|219851969|ref|YP_002466401.1| - 1.9e-05 24.1 3.8 0.12 11.7 0.0 5.3 5 1 0 6 6 6 1 Major royal jelly protein Dockerin_1 PF00404.18 gi|219851969|ref|YP_002466401.1| - 3.2e-05 24.0 0.3 0.00029 21.0 0.5 2.6 2 0 0 2 2 2 1 Dockerin type I domain DUF4144 PF13642.6 gi|219851969|ref|YP_002466401.1| - 3.3e-05 24.4 0.2 15 6.2 0.0 7.6 8 2 2 10 10 8 0 protein structure with unknown function Ldl_recept_b PF00058.17 gi|219851969|ref|YP_002466401.1| - 6.5e-05 23.3 0.0 1.2e+02 3.3 0.0 8.4 11 0 0 11 11 10 0 Low-density lipoprotein receptor repeat class B Tachylectin PF14517.6 gi|219851969|ref|YP_002466401.1| - 0.00069 19.2 35.1 0.016 14.7 7.3 5.0 1 1 3 5 5 5 2 Tachylectin Glycoprot_B_PH2 PF17417.2 gi|219851969|ref|YP_002466401.1| - 0.00069 19.9 11.3 1.1e+02 3.2 0.0 8.5 9 0 0 9 9 9 0 Herpesvirus Glycoprotein B PH-like domain FAD_binding_7 PF03441.14 gi|219851969|ref|YP_002466401.1| - 0.084 12.3 0.2 32 3.9 0.0 4.0 5 0 0 5 5 5 0 FAD binding domain of DNA photolyase DUF5500 PF17604.2 gi|219851969|ref|YP_002466401.1| - 0.099 12.7 0.1 75 3.5 0.0 4.7 7 0 0 7 7 5 0 Family of unknown function (DUF5500) EF-hand_6 PF13405.6 gi|219851969|ref|YP_002466401.1| - 0.15 12.1 0.1 0.15 12.1 0.1 3.3 3 0 0 3 3 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|219851969|ref|YP_002466401.1| - 0.25 11.0 10.0 0.07 12.7 0.4 3.8 4 0 0 4 4 4 0 EF hand PQQ_3 PF13570.6 gi|219851969|ref|YP_002466401.1| - 2.3 8.8 33.4 13 6.4 0.1 10.6 11 2 0 11 11 10 0 PQQ-like domain Ntox33 PF15533.6 gi|219851969|ref|YP_002466401.1| - 2.9 8.4 9.1 1.5e+02 2.9 0.0 6.7 8 1 1 9 9 8 0 Bacterial toxin 33 EF-hand_8 PF13833.6 gi|219851969|ref|YP_002466401.1| - 3.1 7.7 4.6 0.74 9.7 0.3 2.2 2 0 0 2 2 2 0 EF-hand domain pair SRAP PF02586.14 gi|219851970|ref|YP_002466402.1| - 3.7e-05 23.4 0.0 5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) VAPB_antitox PF02697.14 gi|219851972|ref|YP_002466404.1| - 0.032 15.0 0.1 0.038 14.8 0.1 1.2 1 0 0 1 1 1 0 Putative antitoxin Tir_receptor_M PF03549.14 gi|219851973|ref|YP_002466405.1| - 0.067 13.5 0.0 0.073 13.4 0.0 1.1 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) intimin-binding domain Fic PF02661.18 gi|219851974|ref|YP_002466406.1| - 1.6e-21 77.0 0.3 6.5e-21 75.0 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family HTH_11 PF08279.12 gi|219851974|ref|YP_002466406.1| - 0.0039 17.1 0.1 0.017 15.1 0.0 2.1 3 0 0 3 3 3 1 HTH domain HTH_DeoR PF08220.12 gi|219851974|ref|YP_002466406.1| - 0.0049 16.6 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fic_N PF13784.6 gi|219851974|ref|YP_002466406.1| - 0.046 13.8 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Fic/DOC family N-terminal HTH_20 PF12840.7 gi|219851974|ref|YP_002466406.1| - 0.063 13.4 0.0 0.18 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|219851974|ref|YP_002466406.1| - 0.073 13.5 0.1 0.44 10.9 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein OpuAC PF04069.12 gi|219851975|ref|YP_002466407.1| - 8.6e-53 179.5 0.3 9.9e-53 179.3 0.3 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system DUF637 PF04830.13 gi|219851975|ref|YP_002466407.1| - 0.11 12.3 0.4 0.22 11.3 0.4 1.4 1 0 0 1 1 1 0 Possible hemagglutinin (DUF637) FG-GAP_2 PF14312.6 gi|219851975|ref|YP_002466407.1| - 0.13 12.6 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 FG-GAP repeat BBS2_Mid PF14783.6 gi|219851975|ref|YP_002466407.1| - 0.14 12.2 0.2 1.4 9.0 0.2 2.3 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, middle region ABC_tran PF00005.27 gi|219851976|ref|YP_002466408.1| - 2e-32 112.6 0.0 3.1e-32 112.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219851976|ref|YP_002466408.1| - 1.9e-05 24.7 2.8 0.00076 19.4 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|219851976|ref|YP_002466408.1| - 0.0017 18.7 0.8 0.0083 16.5 0.0 2.2 3 0 0 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|219851976|ref|YP_002466408.1| - 0.0058 16.4 0.0 0.0098 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|219851976|ref|YP_002466408.1| - 0.0069 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.6 gi|219851976|ref|YP_002466408.1| - 0.015 15.6 0.0 0.039 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|219851976|ref|YP_002466408.1| - 0.023 15.0 0.0 0.084 13.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|219851976|ref|YP_002466408.1| - 0.025 14.3 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|219851976|ref|YP_002466408.1| - 0.07 13.4 0.1 0.15 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|219851976|ref|YP_002466408.1| - 0.079 12.0 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|219851976|ref|YP_002466408.1| - 0.11 12.2 0.1 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|219851977|ref|YP_002466409.1| - 1.7e-11 44.2 13.1 2.4e-11 43.7 13.1 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|219851978|ref|YP_002466410.1| - 3.3e-16 59.6 20.1 3.3e-16 59.6 20.1 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MFS_1 PF07690.16 gi|219851979|ref|YP_002466411.1| - 1.5e-47 162.3 96.9 3.1e-35 121.8 55.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|219851979|ref|YP_002466411.1| - 1.2e-07 30.9 21.7 5.9e-07 28.7 21.7 1.8 1 1 0 1 1 1 1 MFS_1 like family MFS_2 PF13347.6 gi|219851979|ref|YP_002466411.1| - 0.0012 17.5 25.9 0.0013 17.3 24.9 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein HicB_lk_antitox PF15919.5 gi|219851981|ref|YP_002466413.1| - 0.0016 18.6 0.0 0.0017 18.4 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF4211 PF13926.6 gi|219851984|ref|YP_002466416.1| - 0.11 12.6 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) Fic PF02661.18 gi|219851985|ref|YP_002466417.1| - 1.5e-10 41.9 0.0 2.4e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family DndB PF14072.6 gi|219851989|ref|YP_002466421.1| - 3.1e-123 411.4 0.4 3.5e-123 411.2 0.4 1.0 1 0 0 1 1 1 1 DNA-sulfur modification-associated PAPS_reduct PF01507.19 gi|219851990|ref|YP_002466422.1| - 1.2e-09 38.5 0.0 5.6e-09 36.3 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family AAA_23 PF13476.6 gi|219851991|ref|YP_002466423.1| - 2.9e-20 73.6 5.5 2.9e-20 73.6 5.5 2.8 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|219851991|ref|YP_002466423.1| - 1.4e-09 37.7 0.3 7.9e-09 35.3 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|219851991|ref|YP_002466423.1| - 4.1e-06 26.8 1.8 0.003 17.4 0.0 2.8 3 1 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Syntaxin-6_N PF09177.11 gi|219851991|ref|YP_002466423.1| - 1.5e-05 25.5 8.4 0.0055 17.2 0.7 3.1 2 1 0 2 2 2 2 Syntaxin 6, N-terminal AAA_29 PF13555.6 gi|219851991|ref|YP_002466423.1| - 0.0016 18.1 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Seryl_tRNA_N PF02403.22 gi|219851991|ref|YP_002466423.1| - 0.0017 18.5 2.3 0.0017 18.5 2.3 3.7 3 2 0 3 3 2 1 Seryl-tRNA synthetase N-terminal domain MscS_porin PF12795.7 gi|219851991|ref|YP_002466423.1| - 0.0034 17.0 16.6 0.015 14.9 6.6 2.5 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain Zeta_toxin PF06414.12 gi|219851991|ref|YP_002466423.1| - 0.007 15.7 0.1 0.02 14.2 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin IFT57 PF10498.9 gi|219851991|ref|YP_002466423.1| - 0.01 14.8 17.9 0.055 12.4 4.1 2.3 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 AAA_27 PF13514.6 gi|219851991|ref|YP_002466423.1| - 0.011 15.3 0.0 0.011 15.3 0.0 3.1 3 1 1 4 4 4 0 AAA domain ABC_tran PF00005.27 gi|219851991|ref|YP_002466423.1| - 0.015 15.8 0.0 0.015 15.8 0.0 3.3 2 1 0 2 2 1 0 ABC transporter DUF948 PF06103.11 gi|219851991|ref|YP_002466423.1| - 0.02 15.2 0.6 0.2 11.9 0.0 2.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Cep57_CLD PF14073.6 gi|219851991|ref|YP_002466423.1| - 0.049 13.6 12.1 0.28 11.2 3.8 2.7 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 THOC7 PF05615.13 gi|219851991|ref|YP_002466423.1| - 0.061 13.6 16.9 0.04 14.2 1.7 3.6 2 1 1 3 3 3 0 Tho complex subunit 7 NACHT PF05729.12 gi|219851991|ref|YP_002466423.1| - 0.073 13.0 1.6 0.88 9.5 0.1 3.0 3 0 0 3 3 2 0 NACHT domain Tropomyosin_1 PF12718.7 gi|219851991|ref|YP_002466423.1| - 0.33 11.1 22.1 0.042 14.0 5.4 3.0 3 0 0 3 3 2 0 Tropomyosin like DUF1664 PF07889.12 gi|219851991|ref|YP_002466423.1| - 0.34 10.9 13.7 1.8 8.7 1.6 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) FapA PF03961.13 gi|219851991|ref|YP_002466423.1| - 0.36 9.4 16.6 1.3 7.5 6.9 2.3 2 0 0 2 2 2 0 Flagellar Assembly Protein A APG6_N PF17675.1 gi|219851991|ref|YP_002466423.1| - 0.5 10.9 25.5 0.1 13.1 8.2 3.7 3 2 0 3 3 3 0 Apg6 coiled-coil region DUF724 PF05266.14 gi|219851991|ref|YP_002466423.1| - 0.7 9.7 14.9 2.4 7.9 1.9 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF724) zf-ZPR1 PF03367.13 gi|219851991|ref|YP_002466423.1| - 0.73 9.7 3.5 0.4 10.5 0.1 2.2 2 1 0 2 2 2 0 ZPR1 zinc-finger domain DUF4407 PF14362.6 gi|219851991|ref|YP_002466423.1| - 1.3 8.3 7.1 0.85 8.9 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Terminase_4 PF05119.12 gi|219851991|ref|YP_002466423.1| - 2 8.9 5.0 2.7 8.5 0.4 3.1 3 1 1 4 4 3 0 Phage terminase, small subunit NPV_P10 PF05531.12 gi|219851991|ref|YP_002466423.1| - 2.4 8.7 15.7 1.8e+02 2.6 1.2 5.0 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 gi|219851991|ref|YP_002466423.1| - 2.7 7.8 17.3 2.7 7.9 2.7 4.1 2 2 2 4 4 4 0 Sec34-like family Laminin_II PF06009.12 gi|219851991|ref|YP_002466423.1| - 2.8 8.0 17.7 1.8 8.6 4.2 3.5 2 1 1 3 3 3 0 Laminin Domain II TMPIT PF07851.13 gi|219851991|ref|YP_002466423.1| - 3 7.0 14.4 0.37 10.0 1.1 2.6 2 1 0 2 2 2 0 TMPIT-like protein Occludin_ELL PF07303.13 gi|219851991|ref|YP_002466423.1| - 3.9 8.2 17.1 7.9 7.3 0.4 4.2 2 2 1 3 3 3 0 Occludin homology domain WXG100 PF06013.12 gi|219851991|ref|YP_002466423.1| - 5.4 7.3 6.5 82 3.5 0.1 3.9 3 1 1 4 4 3 0 Proteins of 100 residues with WXG FemAB PF02388.16 gi|219851991|ref|YP_002466423.1| - 6.2 5.6 11.0 2.1 7.1 2.1 2.3 2 0 0 2 2 2 0 FemAB family LPP PF04728.13 gi|219851991|ref|YP_002466423.1| - 7.2 7.1 12.9 9.5 6.7 0.5 4.7 5 0 0 5 5 4 0 Lipoprotein leucine-zipper DndE PF08870.11 gi|219851992|ref|YP_002466424.1| - 1.7e-28 99.1 0.0 2.4e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 DNA sulphur modification protein DndE Aminotran_5 PF00266.19 gi|219851993|ref|YP_002466425.1| - 1e-86 291.3 0.4 1.2e-86 291.0 0.4 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219851993|ref|YP_002466425.1| - 5.8e-11 42.2 0.2 7.2e-11 41.9 0.2 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|219851993|ref|YP_002466425.1| - 3e-09 36.7 1.2 4.3e-09 36.2 1.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219851993|ref|YP_002466425.1| - 2.4e-05 23.0 0.1 3.2e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF262 PF03235.14 gi|219851994|ref|YP_002466426.1| - 4.6e-36 125.1 12.6 4.6e-36 125.1 12.6 3.4 2 1 0 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|219851994|ref|YP_002466426.1| - 2.5e-18 66.3 6.3 2.5e-18 66.3 6.3 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1524) DUF1987 PF09345.10 gi|219851994|ref|YP_002466426.1| - 0.0016 18.1 0.9 0.0016 18.1 0.9 2.5 4 0 0 4 4 4 1 Domain of unknown function (DUF1987) DUF1232 PF06803.12 gi|219851995|ref|YP_002466427.1| - 6.6e-07 29.0 0.0 1.5e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) ResIII PF04851.15 gi|219851996|ref|YP_002466428.1| - 2e-17 63.7 1.0 3.9e-17 62.8 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|219851996|ref|YP_002466428.1| - 9.5e-13 48.5 0.0 4.8e-12 46.2 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|219851996|ref|YP_002466428.1| - 2.8e-09 37.0 0.0 5.8e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase PLDc_2 PF13091.6 gi|219851996|ref|YP_002466428.1| - 5.3e-07 29.6 0.4 2.1e-06 27.7 0.2 2.1 2 0 0 2 2 2 1 PLD-like domain SNF2_N PF00176.23 gi|219851996|ref|YP_002466428.1| - 0.00055 18.8 0.8 0.0026 16.5 0.1 2.0 1 1 1 2 2 2 1 SNF2 family N-terminal domain SecA_DEAD PF07517.14 gi|219851996|ref|YP_002466428.1| - 0.016 14.6 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 SecA DEAD-like domain PglD_N PF17836.1 gi|219851996|ref|YP_002466428.1| - 1.4 9.6 3.5 50 4.6 0.1 3.4 3 0 0 3 3 3 0 PglD N-terminal domain Mistic PF11458.8 gi|219851996|ref|YP_002466428.1| - 3.2 7.8 7.8 2.3 8.2 0.4 3.6 4 0 0 4 4 4 0 Membrane-integrating protein Mistic DUF1823 PF08853.11 gi|219851997|ref|YP_002466429.1| - 0.0032 17.7 0.1 0.0038 17.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1823) T2SSS_2 PF16549.5 gi|219851997|ref|YP_002466429.1| - 0.096 12.7 0.0 0.097 12.7 0.0 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS) pilotin, S protein AAA_23 PF13476.6 gi|219851998|ref|YP_002466430.1| - 1.3e-10 42.1 57.1 0.00067 20.2 57.1 4.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|219851998|ref|YP_002466430.1| - 6.4e-10 39.3 15.8 6.4e-10 39.3 15.8 2.4 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|219851998|ref|YP_002466430.1| - 2.2e-08 33.8 0.1 2.2e-08 33.8 0.1 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219851998|ref|YP_002466430.1| - 4.2e-06 26.4 0.1 1.3e-05 24.8 0.1 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|219851998|ref|YP_002466430.1| - 1e-05 25.3 0.0 1e-05 25.3 0.0 2.6 4 0 0 4 4 4 1 AAA domain AAA_21 PF13304.6 gi|219851998|ref|YP_002466430.1| - 0.00033 20.6 0.1 0.00033 20.6 0.1 3.0 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|219851998|ref|YP_002466430.1| - 0.0086 16.6 0.0 0.0086 16.6 0.0 4.2 3 2 1 4 4 4 1 ABC transporter RsgA_GTPase PF03193.16 gi|219851998|ref|YP_002466430.1| - 0.013 15.4 2.4 0.028 14.3 0.0 2.8 3 0 0 3 3 3 0 RsgA GTPase Flagellin_C PF00700.21 gi|219851998|ref|YP_002466430.1| - 0.055 13.8 0.2 0.28 11.6 0.2 2.2 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region FtsK_SpoIIIE PF01580.18 gi|219851998|ref|YP_002466430.1| - 0.37 10.1 5.3 4.5 6.5 0.0 3.1 3 0 0 3 3 3 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|219851998|ref|YP_002466430.1| - 0.54 10.3 0.0 0.54 10.3 0.0 3.8 3 2 1 4 4 4 0 50S ribosome-binding GTPase Flavin_Reduct PF01613.18 gi|219852000|ref|YP_002466432.1| - 0.00044 20.3 0.0 0.00057 20.0 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain FMN_red PF03358.15 gi|219852002|ref|YP_002466434.1| - 2.8e-20 72.7 0.0 4.1e-20 72.1 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852002|ref|YP_002466434.1| - 1.2e-10 41.5 0.0 1.4e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold FTCD_C PF04961.12 gi|219852002|ref|YP_002466434.1| - 0.17 11.6 0.1 0.4 10.4 0.1 1.6 2 0 0 2 2 2 0 Formiminotransferase-cyclodeaminase TPR_MalT PF17874.1 gi|219852003|ref|YP_002466435.1| - 0.00054 19.4 0.0 0.00062 19.2 0.0 1.0 1 0 0 1 1 1 1 MalT-like TPR region AAA_22 PF13401.6 gi|219852004|ref|YP_002466436.1| - 0.00021 21.6 0.0 0.0054 17.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain GPR15L PF15854.5 gi|219852004|ref|YP_002466436.1| - 0.16 12.2 0.1 0.39 11.0 0.1 1.7 1 0 0 1 1 1 0 G-protein coupled receptor ligand 15 AAA_16 PF13191.6 gi|219852004|ref|YP_002466436.1| - 0.27 11.6 1.7 1.4 9.3 0.1 2.6 1 1 1 2 2 2 0 AAA ATPase domain zf-RRN7 PF11781.8 gi|219852004|ref|YP_002466436.1| - 4.3 7.1 9.4 1.6 8.4 1.2 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Beta_helix PF13229.6 gi|219852007|ref|YP_002466439.1| - 0.00017 21.4 0.0 0.00093 19.1 0.0 2.1 1 1 0 1 1 1 1 Right handed beta helix region DUF1206 PF06724.11 gi|219852008|ref|YP_002466440.1| - 0.0039 17.2 0.3 0.0056 16.7 0.3 1.2 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1206) DUF4431 PF14485.6 gi|219852008|ref|YP_002466440.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4431) tRNA_anti-like PF12869.7 gi|219852008|ref|YP_002466440.1| - 0.88 9.2 4.1 3.7 7.1 4.1 2.2 1 1 0 1 1 1 0 tRNA_anti-like Claudin_2 PF13903.6 gi|219852009|ref|YP_002466441.1| - 0.011 15.5 0.1 0.011 15.5 0.1 1.9 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction PI_PP_I PF18363.1 gi|219852009|ref|YP_002466441.1| - 0.014 15.5 1.5 0.24 11.6 0.0 2.6 3 0 0 3 3 3 0 Phosphoinositide phosphatase insertion domain DUF2721 PF11026.8 gi|219852009|ref|YP_002466441.1| - 0.27 11.1 0.1 0.27 11.1 0.1 2.6 2 1 0 3 3 3 0 Protein of unknown function (DUF2721) DUF4131 PF13567.6 gi|219852009|ref|YP_002466441.1| - 0.3 10.7 0.1 0.3 10.7 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2207 PF09972.9 gi|219852009|ref|YP_002466441.1| - 2.4 6.8 11.3 2.7 6.7 0.2 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) NHL PF01436.21 gi|219852010|ref|YP_002466442.1| - 2.1e-52 172.6 5.1 4.3e-08 32.8 0.0 6.9 6 0 0 6 6 6 6 NHL repeat NosD PF05048.13 gi|219852010|ref|YP_002466442.1| - 1.6e-36 125.8 20.1 1.6e-36 125.8 20.1 2.7 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) SGL PF08450.12 gi|219852010|ref|YP_002466442.1| - 7.4e-23 81.4 8.1 0.00083 19.0 0.3 6.2 1 1 4 6 6 6 6 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219852010|ref|YP_002466442.1| - 7.7e-16 57.8 26.8 0.0087 16.0 0.2 7.8 7 0 0 7 7 7 5 Beta-propeller repeat DUF5128 PF17170.4 gi|219852010|ref|YP_002466442.1| - 1.1e-13 51.0 1.0 0.0001 21.6 0.4 3.7 2 1 2 4 4 4 4 6-bladed beta-propeller Beta_helix PF13229.6 gi|219852010|ref|YP_002466442.1| - 1.6e-13 50.8 21.6 1.6e-13 50.8 21.6 5.4 2 2 1 3 3 3 2 Right handed beta helix region Phytase-like PF13449.6 gi|219852010|ref|YP_002466442.1| - 2.4e-09 37.5 0.6 1.4 8.8 0.0 5.5 3 2 2 5 5 5 3 Esterase-like activity of phytase Dockerin_1 PF00404.18 gi|219852010|ref|YP_002466442.1| - 0.0027 17.8 5.1 0.0063 16.7 2.9 2.6 2 0 0 2 2 2 1 Dockerin type I domain SdiA-regulated PF06977.11 gi|219852010|ref|YP_002466442.1| - 0.0052 16.1 0.2 21 4.2 0.0 4.1 3 2 1 4 4 4 0 SdiA-regulated EF-hand_1 PF00036.32 gi|219852010|ref|YP_002466442.1| - 0.12 12.0 0.1 0.12 12.0 0.1 4.1 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.6 gi|219852010|ref|YP_002466442.1| - 0.17 11.9 0.1 0.17 11.9 0.1 4.0 5 0 0 5 5 4 0 EF-hand domain zf-ribbon_3 PF13248.6 gi|219852011|ref|YP_002466443.1| - 3.1e-08 32.7 2.8 4.6e-08 32.2 2.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219852011|ref|YP_002466443.1| - 2.4e-05 23.9 1.3 3.6e-05 23.3 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219852011|ref|YP_002466443.1| - 0.00024 21.1 0.3 0.00031 20.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon SARAF PF06682.12 gi|219852011|ref|YP_002466443.1| - 0.0098 15.6 0.0 0.044 13.4 0.0 1.8 1 1 1 2 2 2 1 SOCE-associated regulatory factor of calcium homoeostasis TF_Zn_Ribbon PF08271.12 gi|219852011|ref|YP_002466443.1| - 0.01 15.3 0.6 0.024 14.1 0.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-tcix PF14952.6 gi|219852011|ref|YP_002466443.1| - 0.027 14.1 1.8 1.3 8.7 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C4_Topoisom PF01396.19 gi|219852011|ref|YP_002466443.1| - 0.067 13.0 1.3 4.6 7.1 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.6 gi|219852011|ref|YP_002466443.1| - 0.088 12.8 1.4 4 7.5 0.3 2.2 2 0 0 2 2 2 0 YhfH-like protein zf_Rg PF17915.1 gi|219852011|ref|YP_002466443.1| - 0.11 11.9 2.2 2.3 7.7 0.4 2.2 2 0 0 2 2 2 0 Reverse gyrase zinc finger DUF5357 PF17310.2 gi|219852011|ref|YP_002466443.1| - 0.12 10.9 2.6 0.16 10.5 2.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5357) zf-TFIIB PF13453.6 gi|219852011|ref|YP_002466443.1| - 0.15 11.4 1.3 9.3 5.7 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger GATA PF00320.27 gi|219852011|ref|YP_002466443.1| - 0.15 11.7 0.3 0.89 9.2 0.3 2.1 1 1 0 1 1 1 0 GATA zinc finger Zn-ribbon_8 PF09723.10 gi|219852011|ref|YP_002466443.1| - 0.25 11.5 3.6 42 4.4 3.5 2.3 1 1 0 1 1 1 0 Zinc ribbon domain EssA PF10661.9 gi|219852011|ref|YP_002466443.1| - 0.27 11.1 0.0 3.1 7.7 0.0 2.1 1 1 0 2 2 2 0 WXG100 protein secretion system (Wss), protein EssA DNA_ligase_ZBD PF03119.16 gi|219852011|ref|YP_002466443.1| - 0.28 11.3 1.5 22 5.2 0.1 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.7 gi|219852011|ref|YP_002466443.1| - 0.53 10.7 2.0 25 5.4 0.5 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Cys_rich_KTR PF14205.6 gi|219852011|ref|YP_002466443.1| - 1.1 9.2 3.4 0.75 9.6 0.2 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR zinc_ribbon_15 PF17032.5 gi|219852011|ref|YP_002466443.1| - 1.3 9.8 4.3 0.35 11.7 0.8 1.8 2 0 0 2 2 2 0 zinc-ribbon family Asp4 PF16996.5 gi|219852011|ref|YP_002466443.1| - 2.2 8.1 8.5 3.1 7.7 0.0 3.2 3 0 0 3 3 3 0 Accessory secretory protein Sec Asp4 zf-ribbon_3 PF13248.6 gi|219852012|ref|YP_002466444.1| - 2.4e-06 26.8 2.1 3.5e-06 26.2 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219852012|ref|YP_002466444.1| - 0.00013 21.6 0.8 0.00019 21.1 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219852012|ref|YP_002466444.1| - 0.00071 19.6 0.3 0.0011 19.0 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|219852012|ref|YP_002466444.1| - 0.29 10.7 0.7 0.54 9.8 0.7 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|219852012|ref|YP_002466444.1| - 0.35 10.2 2.0 9.7 5.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|219852012|ref|YP_002466444.1| - 6.6 6.9 4.9 14 5.9 0.7 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Radical_SAM PF04055.21 gi|219852013|ref|YP_002466445.1| - 3.7e-19 69.7 0.0 6.2e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219852013|ref|YP_002466445.1| - 3.1e-10 40.5 0.2 1.1e-09 38.7 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3463 PF11946.8 gi|219852013|ref|YP_002466445.1| - 2.1e-09 37.3 0.2 4.3e-09 36.3 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Fer4_14 PF13394.6 gi|219852013|ref|YP_002466445.1| - 3.2e-06 27.3 0.4 8e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain fn3 PF00041.21 gi|219852015|ref|YP_002466447.1| - 1.2e-07 32.0 3.8 0.011 16.1 0.2 2.8 2 0 0 2 2 2 2 Fibronectin type III domain Cu-oxidase_2 PF07731.14 gi|219852015|ref|YP_002466447.1| - 3.4e-07 30.1 12.2 0.00059 19.6 1.9 3.3 3 0 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|219852015|ref|YP_002466447.1| - 0.0044 17.0 3.0 1.1 9.3 0.0 3.7 2 1 1 3 3 3 2 Multicopper oxidase NHL PF01436.21 gi|219852016|ref|YP_002466448.1| - 1.8e-43 144.4 13.8 2.9e-08 33.3 0.1 6.5 6 0 0 6 6 6 6 NHL repeat DUF5128 PF17170.4 gi|219852016|ref|YP_002466448.1| - 1.3e-12 47.5 0.7 0.0054 15.9 0.1 4.1 3 1 1 4 4 4 3 6-bladed beta-propeller SGL PF08450.12 gi|219852016|ref|YP_002466448.1| - 2.3e-12 47.0 4.5 0.019 14.6 0.0 5.5 1 1 2 4 4 4 3 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219852016|ref|YP_002466448.1| - 9.3e-09 35.1 20.4 0.0056 16.6 0.1 6.6 6 1 0 6 6 6 3 Beta-propeller repeat Phytase-like PF13449.6 gi|219852016|ref|YP_002466448.1| - 1.1e-06 28.8 0.1 0.41 10.5 0.0 3.4 2 1 1 3 3 3 3 Esterase-like activity of phytase Dockerin_1 PF00404.18 gi|219852016|ref|YP_002466448.1| - 0.0039 17.3 5.6 0.058 13.6 5.6 2.6 1 1 0 1 1 1 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|219852016|ref|YP_002466448.1| - 0.0055 16.2 6.7 0.045 13.3 0.1 4.3 5 0 0 5 5 5 1 EF hand EF-hand_6 PF13405.6 gi|219852016|ref|YP_002466448.1| - 0.0078 16.1 3.6 0.099 12.6 0.0 3.4 2 1 0 2 2 2 1 EF-hand domain Crystall_2 PF09076.10 gi|219852016|ref|YP_002466448.1| - 0.01 15.7 7.7 4.6 7.2 0.2 3.9 3 0 0 3 3 3 2 Beta/Gamma crystallin US22 PF02393.16 gi|219852016|ref|YP_002466448.1| - 0.021 15.1 0.1 18 5.6 0.0 4.1 3 1 1 4 4 4 0 US22 like Cytotoxic PF09000.10 gi|219852016|ref|YP_002466448.1| - 0.13 12.6 0.1 11 6.4 0.0 3.0 2 1 1 3 3 3 0 Cytotoxic EF-hand_5 PF13202.6 gi|219852016|ref|YP_002466448.1| - 2.7 7.6 10.3 0.77 9.4 0.3 3.5 4 0 0 4 4 4 0 EF hand Methyltransf_25 PF13649.6 gi|219852017|ref|YP_002466449.1| - 7.9e-22 77.8 0.0 1.1e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852017|ref|YP_002466449.1| - 1e-20 74.2 0.0 1.4e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852017|ref|YP_002466449.1| - 2e-18 66.7 0.0 2.5e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852017|ref|YP_002466449.1| - 4.9e-17 62.0 0.0 5.9e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|219852017|ref|YP_002466449.1| - 2.3e-16 60.0 0.0 3.2e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852017|ref|YP_002466449.1| - 7.7e-13 49.0 0.0 1e-12 48.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219852017|ref|YP_002466449.1| - 5.2e-09 36.2 0.0 6.7e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|219852017|ref|YP_002466449.1| - 8.4e-07 28.3 0.0 1.1e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|219852017|ref|YP_002466449.1| - 1.9e-06 27.4 0.0 2.4e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|219852017|ref|YP_002466449.1| - 4.4e-06 26.9 0.0 8.9e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase GCD14 PF08704.10 gi|219852017|ref|YP_002466449.1| - 5.6e-06 26.2 0.0 6.3e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_9 PF08003.11 gi|219852017|ref|YP_002466449.1| - 1.6e-05 24.0 0.0 2.1e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|219852017|ref|YP_002466449.1| - 0.00059 19.4 0.0 0.0011 18.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|219852017|ref|YP_002466449.1| - 0.00068 19.3 0.0 0.012 15.3 0.0 2.0 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|219852017|ref|YP_002466449.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|219852017|ref|YP_002466449.1| - 0.002 17.3 0.0 0.0026 17.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.13 gi|219852017|ref|YP_002466449.1| - 0.0045 16.4 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|219852017|ref|YP_002466449.1| - 0.01 15.9 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|219852017|ref|YP_002466449.1| - 0.017 16.1 0.0 0.025 15.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|219852017|ref|YP_002466449.1| - 0.034 13.7 0.0 0.046 13.3 0.0 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Met_10 PF02475.16 gi|219852017|ref|YP_002466449.1| - 0.067 12.9 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_8 PF05148.15 gi|219852017|ref|YP_002466449.1| - 0.086 12.7 0.0 2.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Hypothetical methyltransferase DRE2_N PF16803.5 gi|219852017|ref|YP_002466449.1| - 0.22 11.7 0.0 0.38 11.0 0.0 1.3 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus PAS_4 PF08448.10 gi|219852019|ref|YP_002466451.1| - 1.9e-22 79.6 0.0 1.5e-07 31.7 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|219852019|ref|YP_002466451.1| - 1.1e-15 57.7 0.0 4.9e-06 26.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|219852019|ref|YP_002466451.1| - 5.8e-15 54.9 1.3 1.2e-05 25.2 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|219852019|ref|YP_002466451.1| - 8e-10 38.7 0.0 0.00057 19.9 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.7 gi|219852019|ref|YP_002466451.1| - 5.2e-07 29.8 1.6 0.016 15.3 0.2 4.5 3 2 0 3 3 3 2 PAS fold TrmB PF01978.19 gi|219852019|ref|YP_002466451.1| - 3.9e-05 23.4 0.1 0.00021 21.1 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PAS_10 PF13596.6 gi|219852019|ref|YP_002466451.1| - 0.00017 22.1 0.1 1 10.0 0.1 3.0 3 0 0 3 3 3 2 PAS domain HTH_IclR PF09339.10 gi|219852019|ref|YP_002466451.1| - 0.0012 18.5 0.1 0.0025 17.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|219852019|ref|YP_002466451.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain ADH_zinc_N PF00107.26 gi|219852020|ref|YP_002466452.1| - 6.8e-19 68.1 1.0 1.2e-18 67.4 1.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|219852020|ref|YP_002466452.1| - 1.6e-18 66.6 0.6 4.4e-18 65.1 0.0 2.0 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|219852020|ref|YP_002466452.1| - 6.7e-06 27.2 0.0 1.5e-05 26.0 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|219852020|ref|YP_002466452.1| - 0.0021 17.6 0.6 0.0033 16.9 0.6 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus F420_oxidored PF03807.17 gi|219852021|ref|YP_002466453.1| - 3.3e-13 50.0 1.0 5e-13 49.5 1.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|219852021|ref|YP_002466453.1| - 0.0008 18.9 1.4 0.0012 18.4 1.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase IlvN PF07991.12 gi|219852021|ref|YP_002466453.1| - 0.00085 18.9 0.8 0.0013 18.3 0.8 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|219852021|ref|YP_002466453.1| - 0.0026 17.7 1.5 0.0038 17.1 1.5 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|219852021|ref|YP_002466453.1| - 0.0052 17.0 0.2 0.0092 16.2 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|219852021|ref|YP_002466453.1| - 0.014 15.0 0.6 0.027 14.1 0.5 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|219852021|ref|YP_002466453.1| - 0.019 15.0 0.2 0.032 14.3 0.2 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|219852021|ref|YP_002466453.1| - 0.042 13.2 0.2 0.069 12.5 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|219852021|ref|YP_002466453.1| - 0.047 14.0 0.7 0.086 13.1 0.7 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|219852021|ref|YP_002466453.1| - 0.079 13.4 0.8 0.34 11.4 0.3 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.10 gi|219852021|ref|YP_002466453.1| - 0.081 12.8 0.5 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 KR domain NmrA PF05368.13 gi|219852021|ref|YP_002466453.1| - 0.18 11.3 1.0 0.28 10.7 1.0 1.3 1 0 0 1 1 1 0 NmrA-like family adh_short_C2 PF13561.6 gi|219852023|ref|YP_002466455.1| - 2.5e-66 223.6 1.2 2.9e-66 223.4 1.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|219852023|ref|YP_002466455.1| - 1.6e-54 184.3 1.8 2e-54 184.0 1.8 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|219852023|ref|YP_002466455.1| - 1.7e-14 54.2 0.9 2.4e-14 53.7 0.9 1.1 1 0 0 1 1 1 1 KR domain Adenine_deam_C PF13382.6 gi|219852023|ref|YP_002466455.1| - 0.014 14.8 1.0 0.034 13.5 1.0 1.6 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain Epimerase PF01370.21 gi|219852023|ref|YP_002466455.1| - 0.05 13.1 0.2 0.15 11.5 0.2 1.9 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF2892 PF11127.8 gi|219852025|ref|YP_002466457.1| - 1.2 9.2 13.8 0.54 10.3 10.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) HTH_23 PF13384.6 gi|219852026|ref|YP_002466458.1| - 3e-05 23.7 0.1 7.3e-05 22.4 0.1 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|219852026|ref|YP_002466458.1| - 6.4e-05 22.9 0.1 0.00027 20.9 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|219852026|ref|YP_002466458.1| - 0.0002 21.4 0.6 0.0006 19.9 0.0 2.2 2 1 0 3 3 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|219852026|ref|YP_002466458.1| - 0.00052 19.9 0.1 0.00078 19.3 0.1 1.2 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|219852026|ref|YP_002466458.1| - 0.0044 16.7 0.2 0.014 15.2 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|219852026|ref|YP_002466458.1| - 0.005 16.2 0.0 0.035 13.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.6 gi|219852026|ref|YP_002466458.1| - 0.0059 16.5 0.4 0.02 14.9 0.0 2.1 2 1 1 3 3 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|219852026|ref|YP_002466458.1| - 0.006 16.4 0.2 0.017 15.0 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|219852026|ref|YP_002466458.1| - 0.012 15.6 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_AraC PF00165.23 gi|219852026|ref|YP_002466458.1| - 0.012 15.7 0.0 0.051 13.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_7 PF02796.15 gi|219852026|ref|YP_002466458.1| - 0.012 15.6 0.3 0.024 14.7 0.3 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_40 PF14493.6 gi|219852026|ref|YP_002466458.1| - 0.02 15.3 0.0 0.076 13.5 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|219852026|ref|YP_002466458.1| - 0.024 14.7 0.0 0.039 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|219852026|ref|YP_002466458.1| - 0.027 14.3 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain NUMOD1 PF07453.13 gi|219852026|ref|YP_002466458.1| - 0.027 14.7 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain Sigma70_ECF PF07638.11 gi|219852026|ref|YP_002466458.1| - 0.029 14.2 0.0 0.036 13.9 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor TrmB PF01978.19 gi|219852026|ref|YP_002466458.1| - 0.035 14.0 0.0 0.055 13.4 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TnsD PF15978.5 gi|219852026|ref|YP_002466458.1| - 0.039 12.9 0.0 0.044 12.8 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Tnp_1 PF01527.20 gi|219852026|ref|YP_002466458.1| - 0.042 14.2 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Transposase Sigma70_r4_2 PF08281.12 gi|219852026|ref|YP_002466458.1| - 0.047 13.4 0.0 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|219852026|ref|YP_002466458.1| - 0.062 12.8 0.0 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_30 PF13556.6 gi|219852026|ref|YP_002466458.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 gi|219852026|ref|YP_002466458.1| - 0.084 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zf-FPG_IleRS PF06827.14 gi|219852026|ref|YP_002466458.1| - 0.094 12.6 1.3 0.1 12.5 0.1 1.7 2 0 0 2 2 1 0 Zinc finger found in FPG and IleRS HTH_Tnp_1_2 PF13022.6 gi|219852026|ref|YP_002466458.1| - 0.11 12.6 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase AHSA1 PF08327.11 gi|219852027|ref|YP_002466459.1| - 1e-12 48.4 0.0 1.4e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|219852027|ref|YP_002466459.1| - 0.0032 17.7 0.1 0.0052 17.1 0.1 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Cadherin_5 PF17892.1 gi|219852027|ref|YP_002466459.1| - 0.016 15.1 0.3 0.16 11.9 0.0 2.2 2 0 0 2 2 2 0 Cadherin-like domain Abhydrolase_6 PF12697.7 gi|219852028|ref|YP_002466460.1| - 8.6e-13 49.4 4.5 1.1e-12 49.1 4.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219852028|ref|YP_002466460.1| - 1.4e-09 37.6 0.1 4.8e-08 32.6 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|219852028|ref|YP_002466460.1| - 2.2e-07 30.8 0.0 3.8e-07 30.0 0.0 1.4 2 0 0 2 2 2 1 alpha/beta hydrolase fold DUF2974 PF11187.8 gi|219852028|ref|YP_002466460.1| - 0.041 13.4 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) RibD_C PF01872.17 gi|219852029|ref|YP_002466461.1| - 8.4e-24 84.5 0.0 1.4e-23 83.8 0.0 1.3 1 1 0 1 1 1 1 RibD C-terminal domain Glyco_hydro_72 PF03198.14 gi|219852031|ref|YP_002466463.1| - 0.14 11.4 0.2 0.73 9.0 0.1 2.0 2 0 0 2 2 2 0 Glucanosyltransferase PAS_4 PF08448.10 gi|219852032|ref|YP_002466464.1| - 3.3e-20 72.4 0.1 8.9e-08 32.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|219852032|ref|YP_002466464.1| - 1.4e-16 60.1 0.5 0.00043 20.2 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_9 PF13426.7 gi|219852032|ref|YP_002466464.1| - 5.9e-15 55.4 0.0 0.00022 21.4 0.0 4.3 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219852032|ref|YP_002466464.1| - 1.6e-11 44.2 0.0 0.0029 17.6 0.0 3.7 4 0 0 4 4 4 3 PAS fold PAS_7 PF12860.7 gi|219852032|ref|YP_002466464.1| - 4.5e-09 36.5 0.2 0.00051 20.2 0.1 4.0 3 2 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|219852032|ref|YP_002466464.1| - 5.8e-05 23.3 0.3 0.00015 22.0 0.3 1.7 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|219852032|ref|YP_002466464.1| - 0.00095 19.7 0.0 0.0021 18.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain HTH_11 PF08279.12 gi|219852032|ref|YP_002466464.1| - 0.0012 18.8 0.2 0.0043 17.0 0.0 2.0 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|219852032|ref|YP_002466464.1| - 0.16 11.9 0.1 0.42 10.5 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Phage_mat-A PF03863.13 gi|219852032|ref|YP_002466464.1| - 0.18 10.7 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 Phage maturation protein F420_oxidored PF03807.17 gi|219852034|ref|YP_002466466.1| - 4.7e-15 55.9 0.5 7.1e-15 55.4 0.5 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|219852034|ref|YP_002466466.1| - 0.0034 17.6 0.2 0.007 16.6 0.1 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|219852034|ref|YP_002466466.1| - 0.0049 16.4 0.2 0.0076 15.8 0.2 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|219852034|ref|YP_002466466.1| - 0.0049 16.8 0.7 0.0049 16.8 0.7 1.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|219852034|ref|YP_002466466.1| - 0.0064 15.9 0.6 0.012 15.0 0.6 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|219852034|ref|YP_002466466.1| - 0.0075 15.7 0.9 0.012 15.1 0.9 1.2 1 0 0 1 1 1 1 short chain dehydrogenase ApbA PF02558.16 gi|219852034|ref|YP_002466466.1| - 0.0088 15.7 0.4 0.017 14.7 0.4 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|219852034|ref|YP_002466466.1| - 0.034 14.4 0.5 0.051 13.8 0.5 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ADH_zinc_N PF00107.26 gi|219852035|ref|YP_002466467.1| - 1.3e-14 54.3 0.2 2.7e-14 53.3 0.2 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|219852035|ref|YP_002466467.1| - 3.2e-14 52.7 0.1 9.5e-14 51.2 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|219852035|ref|YP_002466467.1| - 6.2e-05 24.1 0.0 0.00011 23.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase SAM_MT PF04445.13 gi|219852035|ref|YP_002466467.1| - 0.18 11.2 0.5 0.28 10.5 0.5 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Albumin_I PF08027.11 gi|219852035|ref|YP_002466467.1| - 0.59 9.8 6.0 1.4 8.6 6.0 1.6 1 0 0 1 1 1 0 Albumin I chain b DUF108 PF01958.18 gi|219852036|ref|YP_002466468.1| - 5.4e-32 110.0 0.1 1e-31 109.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|219852036|ref|YP_002466468.1| - 1.7e-16 60.9 0.1 3e-16 60.1 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|219852036|ref|YP_002466468.1| - 0.0071 16.5 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|219852036|ref|YP_002466468.1| - 0.008 17.0 0.0 0.018 15.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|219852036|ref|YP_002466468.1| - 0.048 13.0 0.0 0.086 12.2 0.0 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SelB-wing_2 PF09106.11 gi|219852037|ref|YP_002466469.1| - 0.08 13.2 0.1 0.47 10.7 0.0 2.0 2 0 0 2 2 2 0 Elongation factor SelB, winged helix ARL2_Bind_BART PF11527.8 gi|219852037|ref|YP_002466469.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 The ARF-like 2 binding protein BART Gene66 PF02053.15 gi|219852038|ref|YP_002466470.1| - 0.0029 17.3 0.1 0.0035 17.0 0.1 1.1 1 0 0 1 1 1 1 Gene 66 (IR5) protein DinB_2 PF12867.7 gi|219852038|ref|YP_002466470.1| - 0.15 12.6 2.6 0.81 10.2 2.6 1.9 1 1 0 1 1 1 0 DinB superfamily DUF4186 PF13811.6 gi|219852038|ref|YP_002466470.1| - 0.15 12.1 0.1 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4186) Abhydrolase_6 PF12697.7 gi|219852039|ref|YP_002466471.1| - 3.1e-06 28.0 1.0 3.8e-06 27.7 1.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219852039|ref|YP_002466471.1| - 7.9e-06 25.3 0.2 8.2e-05 22.0 0.1 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|219852039|ref|YP_002466471.1| - 0.018 14.6 0.0 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family PKD PF00801.20 gi|219852041|ref|YP_002466473.1| - 6.4e-65 215.0 86.0 2.4e-13 49.7 7.4 8.2 8 0 0 8 8 8 7 PKD domain NHL PF01436.21 gi|219852041|ref|YP_002466473.1| - 2.8e-40 134.4 19.8 4.1e-10 39.2 0.0 6.5 6 0 0 6 6 6 5 NHL repeat SGL PF08450.12 gi|219852041|ref|YP_002466473.1| - 4.8e-18 65.6 7.9 0.0013 18.4 0.1 5.8 1 1 4 5 5 5 5 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|219852041|ref|YP_002466473.1| - 1.3e-12 47.5 36.4 0.0097 15.9 0.0 8.0 8 0 0 8 8 8 6 Beta-propeller repeat DUF5128 PF17170.4 gi|219852041|ref|YP_002466473.1| - 2.6e-05 23.6 1.8 0.0055 15.9 0.1 3.0 2 1 1 3 3 3 2 6-bladed beta-propeller Phytase-like PF13449.6 gi|219852041|ref|YP_002466473.1| - 0.00068 19.7 0.1 4.8 7.0 0.0 4.2 3 1 1 4 4 4 1 Esterase-like activity of phytase SdiA-regulated PF06977.11 gi|219852041|ref|YP_002466473.1| - 0.01 15.1 0.6 23 4.1 0.0 4.4 4 0 0 4 4 4 0 SdiA-regulated PKD_3 PF16820.5 gi|219852041|ref|YP_002466473.1| - 0.011 15.5 24.0 0.051 13.3 0.3 6.6 7 0 0 7 7 7 0 PKD-like domain DUF3324 PF11797.8 gi|219852041|ref|YP_002466473.1| - 0.02 14.9 14.8 0.29 11.1 0.1 6.1 7 0 0 7 7 7 0 Protein of unknown function C-terminal (DUF3324) DUF5011 PF16403.5 gi|219852041|ref|YP_002466473.1| - 0.022 14.9 0.7 0.022 14.9 0.7 7.4 7 0 0 7 7 7 0 Domain of unknown function (DUF5011) DUF4625 PF15418.6 gi|219852041|ref|YP_002466473.1| - 0.075 13.3 1.9 22 5.3 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4625) Y_Y_Y PF07495.13 gi|219852041|ref|YP_002466473.1| - 0.51 10.3 20.4 0.53 10.3 0.6 5.9 7 0 0 7 7 7 0 Y_Y_Y domain ChitinaseA_N PF08329.10 gi|219852041|ref|YP_002466473.1| - 0.6 9.8 6.0 1.4e+02 2.1 0.0 5.7 7 0 0 7 7 7 0 Chitinase A, N-terminal domain TcfC PF16967.5 gi|219852041|ref|YP_002466473.1| - 4.3 6.9 9.9 30 4.2 0.1 5.2 5 0 0 5 5 5 0 E-set like domain LTD PF00932.19 gi|219852044|ref|YP_002466476.1| - 1.6e-08 34.8 0.0 1.7e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain PROCT PF08084.11 gi|219852044|ref|YP_002466476.1| - 0.21 11.5 0.1 5.5 6.9 0.1 2.1 2 0 0 2 2 2 0 PROCT (NUC072) domain COesterase PF00135.28 gi|219852045|ref|YP_002466477.1| - 4.5e-115 385.4 0.0 6.6e-115 384.9 0.0 1.2 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 gi|219852045|ref|YP_002466477.1| - 6.1e-05 23.0 1.4 0.00022 21.2 0.0 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|219852045|ref|YP_002466477.1| - 0.00089 18.8 0.1 0.0018 17.8 0.1 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Esterase PF00756.20 gi|219852045|ref|YP_002466477.1| - 0.0072 16.0 0.2 0.014 15.0 0.2 1.4 1 0 0 1 1 1 1 Putative esterase Radical_SAM PF04055.21 gi|219852046|ref|YP_002466478.1| - 4.8e-14 53.1 0.0 1e-13 52.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily PGK PF00162.19 gi|219852047|ref|YP_002466479.1| - 7.9e-143 476.0 0.0 8.9e-143 475.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PGM_PMM_I PF02878.16 gi|219852048|ref|YP_002466480.1| - 1.9e-32 111.8 0.0 4.9e-32 110.5 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|219852048|ref|YP_002466480.1| - 1.5e-20 73.5 0.0 2.5e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|219852048|ref|YP_002466480.1| - 5.6e-18 65.5 0.0 1e-17 64.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|219852048|ref|YP_002466480.1| - 4.7e-10 39.5 0.0 1.2e-09 38.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PPDK_N PF01326.19 gi|219852049|ref|YP_002466481.1| - 5e-113 377.7 0.0 6.9e-113 377.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|219852049|ref|YP_002466481.1| - 5e-60 203.1 0.0 7.7e-60 202.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|219852049|ref|YP_002466481.1| - 8.7e-25 86.3 0.5 3.2e-24 84.4 0.2 2.2 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Sulfate_transp PF00916.20 gi|219852050|ref|YP_002466482.1| - 4.3e-73 246.3 29.6 6.1e-73 245.7 29.6 1.2 1 0 0 1 1 1 1 Sulfate permease family STAS PF01740.21 gi|219852050|ref|YP_002466482.1| - 1.1e-15 57.3 0.0 2e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|219852050|ref|YP_002466482.1| - 0.034 14.5 0.0 0.14 12.5 0.0 2.0 1 0 0 1 1 1 0 STAS domain DUF1514 PF07438.11 gi|219852050|ref|YP_002466482.1| - 1.6 8.6 3.8 15 5.6 0.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) HIT PF01230.23 gi|219852051|ref|YP_002466483.1| - 1.9e-22 79.8 0.0 2.3e-22 79.6 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|219852051|ref|YP_002466483.1| - 7.3e-10 39.3 0.0 8.5e-10 39.1 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|219852051|ref|YP_002466483.1| - 0.00064 19.6 0.0 0.0012 18.7 0.0 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 GalP_UDP_tr_C PF02744.17 gi|219852051|ref|YP_002466483.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.0 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF2284 PF10050.9 gi|219852052|ref|YP_002466484.1| - 2.9e-44 150.7 0.0 3.5e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Lactamase_B PF00753.27 gi|219852053|ref|YP_002466485.1| - 2.1e-07 31.2 0.1 2.9e-07 30.7 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219852053|ref|YP_002466485.1| - 4.9e-05 22.9 0.1 0.00013 21.6 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.16 gi|219852054|ref|YP_002466486.1| - 1.2e-41 142.9 46.0 1.2e-41 142.9 46.0 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219852054|ref|YP_002466486.1| - 1.2e-11 44.2 10.3 1.2e-11 44.2 10.3 2.6 3 0 0 3 3 3 1 Sugar (and other) transporter OATP PF03137.20 gi|219852054|ref|YP_002466486.1| - 0.0013 17.1 0.4 0.0013 17.1 0.4 1.9 2 0 0 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|219852054|ref|YP_002466486.1| - 0.018 13.9 17.5 0.039 12.8 2.7 2.2 1 1 1 2 2 2 0 MFS_1 like family Pentapeptide_3 PF13576.6 gi|219852055|ref|YP_002466487.1| - 8.9e-56 185.8 148.4 1e-10 41.6 15.5 7.6 2 1 7 10 10 10 9 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|219852055|ref|YP_002466487.1| - 9.6e-07 28.7 4.7 1.8e-06 27.8 4.7 1.4 1 0 0 1 1 1 1 Ion channel Ribosomal_S21 PF01165.20 gi|219852055|ref|YP_002466487.1| - 0.058 13.1 7.0 0.12 12.2 7.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S21 DUF945 PF06097.11 gi|219852055|ref|YP_002466487.1| - 0.27 10.3 4.4 0.5 9.4 4.4 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) Acetyltransf_3 PF13302.7 gi|219852057|ref|YP_002466489.1| - 1.4e-16 61.4 0.0 1.7e-16 61.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|219852057|ref|YP_002466489.1| - 1.2e-08 35.2 0.0 1.5e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|219852057|ref|YP_002466489.1| - 0.0014 18.3 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|219852057|ref|YP_002466489.1| - 0.0073 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Kelch_6 PF13964.6 gi|219852059|ref|YP_002466491.1| - 4.2e-19 68.1 16.8 0.0041 17.3 0.1 6.5 4 2 2 6 6 6 5 Kelch motif Kelch_4 PF13418.6 gi|219852059|ref|YP_002466491.1| - 3.7e-17 62.1 27.1 4.8e-05 23.3 0.2 6.9 6 1 0 6 6 6 5 Galactose oxidase, central domain Kelch_5 PF13854.6 gi|219852059|ref|YP_002466491.1| - 4.4e-15 55.3 4.1 0.0028 17.6 0.0 6.4 6 0 0 6 6 6 3 Kelch motif Kelch_2 PF07646.15 gi|219852059|ref|YP_002466491.1| - 9.2e-12 44.4 16.8 0.0053 16.7 0.1 6.4 6 0 0 6 6 6 3 Kelch motif Sortilin-Vps10 PF15902.5 gi|219852059|ref|YP_002466491.1| - 4.6e-10 38.9 9.5 2.5e-07 29.9 0.2 2.4 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR_2 PF13088.6 gi|219852059|ref|YP_002466491.1| - 1.6e-09 37.5 15.1 1.7e-05 24.3 5.8 3.1 1 1 2 3 3 3 3 BNR repeat-like domain Kelch_3 PF13415.6 gi|219852059|ref|YP_002466491.1| - 2.3e-09 37.3 35.1 0.0015 18.8 0.5 6.5 6 0 0 6 6 6 3 Galactose oxidase, central domain BNR_6 PF15899.5 gi|219852059|ref|YP_002466491.1| - 2.7e-08 33.1 4.4 0.15 12.2 0.0 5.4 5 0 0 5 5 5 2 BNR-Asp box repeat BNR PF02012.20 gi|219852059|ref|YP_002466491.1| - 2.9e-07 29.5 34.7 0.15 12.2 1.4 6.2 5 0 0 5 5 5 4 BNR/Asp-box repeat Kelch_1 PF01344.25 gi|219852059|ref|YP_002466491.1| - 3.3e-07 29.8 16.3 0.03 13.9 0.0 6.7 6 1 0 6 6 6 3 Kelch motif PKD PF00801.20 gi|219852059|ref|YP_002466491.1| - 3.6e-07 29.9 11.9 0.00048 19.9 0.5 2.9 2 0 0 2 2 2 2 PKD domain Glyoxal_oxid_N PF07250.11 gi|219852059|ref|YP_002466491.1| - 0.00024 20.4 12.1 0.22 10.7 0.9 4.0 3 1 1 4 4 4 3 Glyoxal oxidase N-terminus EF-hand_6 PF13405.6 gi|219852059|ref|YP_002466491.1| - 0.0015 18.3 2.0 0.15 12.1 0.1 2.7 2 0 0 2 2 2 1 EF-hand domain EF-hand_8 PF13833.6 gi|219852059|ref|YP_002466491.1| - 0.028 14.2 0.3 0.028 14.2 0.3 2.3 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|219852059|ref|YP_002466491.1| - 0.046 13.3 0.2 0.046 13.3 0.2 2.8 3 0 0 3 3 2 0 EF hand Dockerin_1 PF00404.18 gi|219852059|ref|YP_002466491.1| - 0.2 11.8 2.4 0.13 12.4 0.4 1.8 2 0 0 2 2 1 0 Dockerin type I domain DUF5122 PF17164.4 gi|219852059|ref|YP_002466491.1| - 0.29 11.5 13.9 36 4.8 0.1 5.8 5 0 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller sCache_2 PF17200.4 gi|219852060|ref|YP_002466492.1| - 1.9e-13 50.5 0.2 3.4e-13 49.7 0.2 1.4 1 1 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|219852060|ref|YP_002466492.1| - 2.2e-08 33.6 0.0 2.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Cache domain Phage_Cox PF10743.9 gi|219852060|ref|YP_002466492.1| - 0.16 12.1 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Regulatory phage protein cox MFS_1 PF07690.16 gi|219852061|ref|YP_002466493.1| - 1.8e-52 178.4 60.7 1e-48 166.1 51.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|219852061|ref|YP_002466493.1| - 2.1e-13 49.5 27.6 2.7e-13 49.2 27.6 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector TRI12 PF06609.13 gi|219852061|ref|YP_002466493.1| - 1.9e-06 26.6 10.0 1.9e-06 26.6 10.0 2.2 1 1 1 3 3 3 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|219852061|ref|YP_002466493.1| - 0.0012 17.2 2.0 0.0012 17.2 2.0 3.2 3 1 0 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 gi|219852061|ref|YP_002466493.1| - 0.0048 16.3 33.1 0.0065 15.8 33.1 1.2 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MarR PF01047.22 gi|219852062|ref|YP_002466494.1| - 1.4e-12 47.3 0.0 2.2e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|219852062|ref|YP_002466494.1| - 6.7e-10 38.7 0.0 9.7e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|219852062|ref|YP_002466494.1| - 8.2e-08 32.6 0.0 1.3e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.11 gi|219852062|ref|YP_002466494.1| - 6.9e-06 26.7 0.0 1.1e-05 26.0 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal HTH_24 PF13412.6 gi|219852062|ref|YP_002466494.1| - 8.5e-05 22.0 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|219852062|ref|YP_002466494.1| - 0.00028 21.0 0.0 0.00051 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|219852062|ref|YP_002466494.1| - 0.00045 20.1 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|219852062|ref|YP_002466494.1| - 0.0032 17.4 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|219852062|ref|YP_002466494.1| - 0.0055 16.9 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|219852062|ref|YP_002466494.1| - 0.0061 16.3 0.0 0.0092 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|219852062|ref|YP_002466494.1| - 0.013 15.6 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.6 gi|219852062|ref|YP_002466494.1| - 0.03 14.3 0.0 0.062 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix ERO1 PF04137.15 gi|219852062|ref|YP_002466494.1| - 0.069 12.3 0.1 0.075 12.2 0.1 1.1 1 0 0 1 1 1 0 Endoplasmic Reticulum Oxidoreductin 1 (ERO1) PadR PF03551.14 gi|219852062|ref|YP_002466494.1| - 0.091 12.7 0.2 0.23 11.4 0.1 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|219852062|ref|YP_002466494.1| - 0.096 13.0 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.12 gi|219852062|ref|YP_002466494.1| - 0.11 11.9 0.6 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit FAM70 PF14967.6 gi|219852064|ref|YP_002466496.1| - 0.29 10.5 1.8 0.53 9.7 1.8 1.4 1 0 0 1 1 1 0 FAM70 protein DUF1634 PF07843.11 gi|219852064|ref|YP_002466496.1| - 0.68 10.0 13.8 1.4 9.0 1.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1634) Bmp PF02608.14 gi|219852065|ref|YP_002466497.1| - 2.8e-42 144.7 0.1 3.7e-42 144.3 0.1 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Methyltransf_4 PF02390.17 gi|219852065|ref|YP_002466497.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Class_IIIsignal PF04021.12 gi|219852065|ref|YP_002466497.1| - 3.6 7.7 8.2 9.9 6.3 8.2 1.8 1 0 0 1 1 1 0 Class III signal peptide sCache_2 PF17200.4 gi|219852066|ref|YP_002466498.1| - 3.2e-50 170.0 10.6 1.9e-17 63.6 0.8 3.1 1 1 2 3 3 3 3 Single Cache domain 2 dCache_2 PF08269.11 gi|219852066|ref|YP_002466498.1| - 3.6e-44 151.1 2.8 4.4e-14 52.4 0.0 3.1 2 1 0 3 3 3 3 Cache domain Cache_3-Cache_2 PF17201.4 gi|219852066|ref|YP_002466498.1| - 8.4e-08 31.8 0.4 0.13 11.5 0.0 3.2 3 0 0 3 3 3 3 Cache 3/Cache 2 fusion domain LytB_WW PF18342.1 gi|219852066|ref|YP_002466498.1| - 0.063 13.4 0.2 12 6.1 0.0 3.4 3 0 0 3 3 3 0 Endo-beta-N-acetylglucosaminidase LytB WW domain DUF357 PF04010.13 gi|219852066|ref|YP_002466498.1| - 0.44 10.7 3.4 18 5.5 0.1 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF357) ROK PF00480.20 gi|219852067|ref|YP_002466499.1| - 1.3e-56 192.2 0.0 1.7e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 ROK family Hexokinase_1 PF00349.21 gi|219852067|ref|YP_002466499.1| - 0.011 15.7 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Hexokinase FGGY_N PF00370.21 gi|219852067|ref|YP_002466499.1| - 0.035 13.7 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Glucokinase PF02685.16 gi|219852067|ref|YP_002466499.1| - 0.16 10.9 0.0 0.41 9.6 0.0 1.6 1 1 0 1 1 1 0 Glucokinase Peptidase_M13_N PF05649.13 gi|219852068|ref|YP_002466500.1| - 1.6e-95 321.0 0.0 2e-95 320.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 gi|219852068|ref|YP_002466500.1| - 2.9e-62 209.9 0.0 5.9e-62 208.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M4 PF01447.18 gi|219852068|ref|YP_002466500.1| - 0.00017 22.1 0.9 0.00063 20.3 0.1 2.3 2 1 0 2 2 2 1 Thermolysin metallopeptidase, catalytic domain Aldo_ket_red PF00248.21 gi|219852069|ref|YP_002466501.1| - 4.6e-45 154.1 0.0 6.9e-44 150.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|219852069|ref|YP_002466501.1| - 4.3e-10 40.0 5.0 1.1e-09 38.7 5.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852069|ref|YP_002466501.1| - 3.4e-09 36.7 4.6 7.5e-09 35.6 4.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852069|ref|YP_002466501.1| - 4.9e-06 26.6 6.3 0.00042 20.4 0.5 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852069|ref|YP_002466501.1| - 9.8e-06 25.9 3.6 2.5e-05 24.6 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852069|ref|YP_002466501.1| - 0.00016 21.4 1.9 0.00016 21.4 1.9 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219852069|ref|YP_002466501.1| - 0.00079 19.4 2.8 0.00079 19.4 2.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852069|ref|YP_002466501.1| - 0.001 19.6 8.4 0.0041 17.7 8.5 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852069|ref|YP_002466501.1| - 0.0076 16.4 9.4 0.26 11.4 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|219852069|ref|YP_002466501.1| - 0.0094 15.7 4.4 0.024 14.4 0.2 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|219852069|ref|YP_002466501.1| - 0.011 15.9 0.9 0.88 9.8 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219852069|ref|YP_002466501.1| - 0.013 15.6 3.2 0.013 15.6 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852069|ref|YP_002466501.1| - 0.017 16.0 9.3 0.028 15.3 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|219852069|ref|YP_002466501.1| - 0.055 14.3 5.6 0.41 11.5 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852069|ref|YP_002466501.1| - 0.33 11.6 14.0 0.12 12.9 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain TetR_N PF00440.23 gi|219852070|ref|YP_002466502.1| - 1.7e-14 53.3 0.0 3e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_10 PF16295.5 gi|219852070|ref|YP_002466502.1| - 1.2e-06 28.8 0.0 1.5e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_5 PF08360.11 gi|219852070|ref|YP_002466502.1| - 0.036 14.3 0.0 0.074 13.2 0.0 1.6 1 1 0 1 1 1 0 QacR-like protein, C-terminal region TetR_C_9 PF14514.6 gi|219852070|ref|YP_002466502.1| - 0.048 13.8 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Myco_arth_vir_N PF09610.10 gi|219852070|ref|YP_002466502.1| - 0.24 11.5 0.9 0.63 10.2 0.0 2.2 2 0 0 2 2 2 0 Mycoplasma virulence signal region (Myco_arth_vir_N) ABC_tran PF00005.27 gi|219852071|ref|YP_002466503.1| - 1.1e-22 81.0 0.0 1.4e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852071|ref|YP_002466503.1| - 2e-07 31.2 1.1 0.0038 17.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|219852071|ref|YP_002466503.1| - 0.0021 17.8 0.1 0.28 10.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|219852071|ref|YP_002466503.1| - 0.0046 17.5 0.1 0.0069 16.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219852071|ref|YP_002466503.1| - 0.0088 15.8 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain CLP1_P PF16575.5 gi|219852071|ref|YP_002466503.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_13 PF13166.6 gi|219852071|ref|YP_002466503.1| - 0.044 12.4 0.8 3.1 6.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|219852071|ref|YP_002466503.1| - 0.061 13.0 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|219852071|ref|YP_002466503.1| - 0.12 11.3 0.3 0.18 10.7 0.3 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 gi|219852071|ref|YP_002466503.1| - 0.13 12.5 0.1 0.29 11.3 0.1 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|219852071|ref|YP_002466503.1| - 0.13 12.0 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|219852071|ref|YP_002466503.1| - 0.14 12.6 0.3 0.32 11.4 0.2 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|219852071|ref|YP_002466503.1| - 0.19 11.3 0.3 0.34 10.5 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|219852071|ref|YP_002466503.1| - 0.2 11.6 0.4 0.35 10.8 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase SMC_N PF02463.19 gi|219852071|ref|YP_002466503.1| - 0.25 10.7 0.5 0.71 9.3 0.1 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|219852071|ref|YP_002466503.1| - 0.26 11.0 2.5 0.89 9.2 2.5 1.9 1 1 0 1 1 1 0 AAA domain ODV-E18 PF10717.9 gi|219852072|ref|YP_002466504.1| - 0.07 13.0 4.3 0.17 11.7 0.1 3.2 2 1 1 3 3 3 0 Occlusion-derived virus envelope protein ODV-E18 ABC2_membrane PF01061.24 gi|219852073|ref|YP_002466505.1| - 9.1e-35 120.0 24.7 9.1e-35 120.0 24.7 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219852073|ref|YP_002466505.1| - 1.1e-14 54.3 28.6 1.1e-14 54.3 28.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|219852074|ref|YP_002466506.1| - 1.1e-34 119.9 0.0 2.1e-34 119.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852074|ref|YP_002466506.1| - 9.6e-12 45.3 2.3 8.8e-08 32.3 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219852074|ref|YP_002466506.1| - 7.1e-08 33.1 0.0 1.6e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|219852074|ref|YP_002466506.1| - 6.6e-07 29.4 0.1 0.016 15.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|219852074|ref|YP_002466506.1| - 3.9e-05 24.1 0.1 0.00027 21.4 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|219852074|ref|YP_002466506.1| - 0.00012 22.7 0.0 0.00018 22.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|219852074|ref|YP_002466506.1| - 0.0011 18.6 0.0 0.0043 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|219852074|ref|YP_002466506.1| - 0.0012 18.6 0.2 0.002 17.8 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|219852074|ref|YP_002466506.1| - 0.0024 17.4 0.0 0.027 13.9 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|219852074|ref|YP_002466506.1| - 0.0025 18.1 0.4 0.012 15.9 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219852074|ref|YP_002466506.1| - 0.004 16.9 0.3 0.011 15.5 0.1 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852074|ref|YP_002466506.1| - 0.0084 16.5 0.0 0.015 15.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|219852074|ref|YP_002466506.1| - 0.037 14.0 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|219852074|ref|YP_002466506.1| - 0.069 13.1 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|219852074|ref|YP_002466506.1| - 0.091 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|219852074|ref|YP_002466506.1| - 0.15 11.7 0.3 0.97 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_25 PF13649.6 gi|219852075|ref|YP_002466507.1| - 9.8e-18 64.7 0.0 1.5e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852075|ref|YP_002466507.1| - 4.9e-13 49.5 0.0 7.7e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852075|ref|YP_002466507.1| - 7.5e-12 45.3 0.0 9.5e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852075|ref|YP_002466507.1| - 9e-09 36.0 0.0 1.4e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852075|ref|YP_002466507.1| - 5.3e-07 29.2 0.0 7.4e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.11 gi|219852075|ref|YP_002466507.1| - 5.4e-07 29.5 0.0 3.1e-06 27.0 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|219852075|ref|YP_002466507.1| - 1.1e-06 28.6 0.0 1.8e-06 27.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|219852075|ref|YP_002466507.1| - 1.1e-06 28.3 0.0 1.6e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|219852075|ref|YP_002466507.1| - 8.2e-05 22.3 0.0 0.0001 22.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|219852075|ref|YP_002466507.1| - 0.00069 19.0 0.0 0.00088 18.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|219852075|ref|YP_002466507.1| - 0.0014 18.1 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|219852075|ref|YP_002466507.1| - 0.19 11.7 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PadR PF03551.14 gi|219852076|ref|YP_002466508.1| - 1.8e-17 63.0 0.3 4.4e-17 61.8 0.2 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|219852076|ref|YP_002466508.1| - 2.4e-05 24.9 0.0 5.3e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|219852076|ref|YP_002466508.1| - 0.092 12.9 0.0 0.24 11.6 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|219852076|ref|YP_002466508.1| - 0.11 12.4 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|219852076|ref|YP_002466508.1| - 0.17 11.6 0.1 0.27 11.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Methyltransf_23 PF13489.6 gi|219852080|ref|YP_002466512.1| - 1.1e-14 54.7 0.0 2.2e-14 53.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852080|ref|YP_002466512.1| - 2.8e-14 53.6 0.0 5.8e-14 52.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852080|ref|YP_002466512.1| - 1.2e-13 51.6 0.0 1.7e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852080|ref|YP_002466512.1| - 1.4e-13 50.9 0.0 1.7e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852080|ref|YP_002466512.1| - 2.1e-13 50.7 0.0 4.3e-13 49.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852080|ref|YP_002466512.1| - 9.2e-12 44.8 0.0 9.7e-11 41.4 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|219852080|ref|YP_002466512.1| - 0.00018 20.7 0.0 0.00026 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|219852080|ref|YP_002466512.1| - 0.00089 18.6 0.0 0.0011 18.3 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|219852080|ref|YP_002466512.1| - 0.001 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_PK PF05891.12 gi|219852080|ref|YP_002466512.1| - 0.0015 18.1 0.0 0.002 17.7 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase PrmA PF06325.13 gi|219852080|ref|YP_002466512.1| - 0.0026 17.2 0.0 0.0044 16.5 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Rsm22 PF09243.10 gi|219852080|ref|YP_002466512.1| - 0.0042 16.4 0.0 0.0049 16.2 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 DREV PF05219.12 gi|219852080|ref|YP_002466512.1| - 0.0058 15.8 0.0 0.024 13.7 0.0 1.8 2 0 0 2 2 2 1 DREV methyltransferase UPF0020 PF01170.18 gi|219852080|ref|YP_002466512.1| - 0.0062 16.2 0.0 0.0087 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 ATPase PF06745.13 gi|219852080|ref|YP_002466512.1| - 0.013 14.8 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 KaiC Metallophos PF00149.28 gi|219852081|ref|YP_002466513.1| - 0.00013 22.5 7.9 0.0026 18.3 7.9 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CBM_6 PF03422.15 gi|219852082|ref|YP_002466514.1| - 2.5e-19 69.8 1.7 1.2e-18 67.6 1.7 2.3 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852082|ref|YP_002466514.1| - 1.8e-11 44.1 0.3 5.1e-11 42.7 0.3 1.8 1 0 0 1 1 1 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219852082|ref|YP_002466514.1| - 5.2e-08 33.2 0.5 1.4e-07 31.8 0.5 1.7 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) Dockerin_1 PF00404.18 gi|219852082|ref|YP_002466514.1| - 3.9e-05 23.8 1.0 8.2e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219852082|ref|YP_002466514.1| - 0.0074 16.1 3.4 0.21 11.6 0.2 3.0 3 0 0 3 3 3 1 EF-hand domain EF-hand_1 PF00036.32 gi|219852082|ref|YP_002466514.1| - 0.12 11.9 9.0 0.092 12.3 0.3 3.0 3 0 0 3 3 3 0 EF hand Response_reg PF00072.24 gi|219852083|ref|YP_002466515.1| - 4.7e-21 75.0 0.0 7.2e-21 74.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain DUF2178 PF09946.9 gi|219852084|ref|YP_002466516.1| - 1.6e-09 37.9 0.2 1.8e-09 37.7 0.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) HTH_3 PF01381.22 gi|219852085|ref|YP_002466517.1| - 6.8e-12 45.3 0.0 7.4e-12 45.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|219852085|ref|YP_002466517.1| - 1.1e-09 38.2 0.1 1.3e-09 38.0 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|219852085|ref|YP_002466517.1| - 1e-05 25.8 0.0 1.2e-05 25.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|219852085|ref|YP_002466517.1| - 0.00052 20.4 0.0 0.00059 20.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain PKD PF00801.20 gi|219852086|ref|YP_002466518.1| - 7.7e-33 112.2 42.6 5.7e-11 42.1 3.2 5.8 5 1 0 5 5 5 4 PKD domain CBM_6 PF03422.15 gi|219852086|ref|YP_002466518.1| - 6.9e-24 84.5 1.8 6.9e-24 84.5 1.8 5.1 3 2 2 6 6 6 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852086|ref|YP_002466518.1| - 1.3e-11 44.6 0.2 1.3e-11 44.6 0.2 3.2 3 1 1 4 4 4 1 DUF5010 C-terminal domain CarbopepD_reg_2 PF13715.6 gi|219852086|ref|YP_002466518.1| - 6.6e-07 29.3 0.7 7.1e-05 22.7 0.0 3.4 2 0 0 2 2 2 1 CarboxypepD_reg-like domain CBM_35 PF16990.5 gi|219852086|ref|YP_002466518.1| - 4.5e-05 23.7 0.4 4.5e-05 23.7 0.4 3.3 2 1 2 5 5 5 1 Carbohydrate binding module (family 35) PKD_3 PF16820.5 gi|219852086|ref|YP_002466518.1| - 9.5e-05 22.1 9.7 0.064 13.0 0.1 5.0 5 0 0 5 5 5 2 PKD-like domain PEGA PF08308.11 gi|219852086|ref|YP_002466518.1| - 0.00024 20.9 14.6 0.0032 17.3 0.4 6.3 7 1 0 7 7 7 2 PEGA domain Y_Y_Y PF07495.13 gi|219852086|ref|YP_002466518.1| - 0.16 12.0 1.1 7.7 6.6 0.1 2.8 2 0 0 2 2 2 0 Y_Y_Y domain NHL PF01436.21 gi|219852087|ref|YP_002466519.1| - 7.6e-90 290.7 42.7 9.3e-09 34.9 0.1 12.4 12 0 0 12 12 12 12 NHL repeat SGL PF08450.12 gi|219852087|ref|YP_002466519.1| - 2.2e-40 138.8 25.3 1.6e-06 27.9 0.4 10.1 2 2 6 9 9 9 9 SMP-30/Gluconolactonase/LRE-like region DUF5128 PF17170.4 gi|219852087|ref|YP_002466519.1| - 2.7e-34 118.8 19.5 5.2e-08 32.4 0.1 7.4 4 2 4 8 8 8 8 6-bladed beta-propeller SBBP PF06739.11 gi|219852087|ref|YP_002466519.1| - 2.5e-32 110.6 55.2 0.0052 16.8 1.1 12.8 12 0 0 12 12 12 11 Beta-propeller repeat Phytase-like PF13449.6 gi|219852087|ref|YP_002466519.1| - 2.6e-13 50.6 7.3 0.21 11.5 0.0 9.7 5 2 2 9 9 9 2 Esterase-like activity of phytase Arylesterase PF01731.20 gi|219852087|ref|YP_002466519.1| - 3e-09 36.9 11.3 5.7 7.2 0.0 9.6 11 0 0 11 11 11 1 Arylesterase US22 PF02393.16 gi|219852087|ref|YP_002466519.1| - 1.2e-07 32.1 2.4 25 5.2 0.0 8.7 6 3 1 8 8 8 0 US22 like SNAP-25 PF00835.19 gi|219852087|ref|YP_002466519.1| - 6.9e-07 29.5 19.2 0.66 10.3 0.4 9.8 7 4 4 11 11 11 2 SNAP-25 family Ldl_recept_b PF00058.17 gi|219852087|ref|YP_002466519.1| - 4.8e-06 26.9 0.7 27 5.4 0.0 8.3 8 3 0 8 8 7 0 Low-density lipoprotein receptor repeat class B SdiA-regulated PF06977.11 gi|219852087|ref|YP_002466519.1| - 1.5e-05 24.3 9.5 12 5.0 0.0 8.2 8 2 2 10 10 10 0 SdiA-regulated Dockerin_1 PF00404.18 gi|219852087|ref|YP_002466519.1| - 8.3e-05 22.7 0.2 0.00036 20.7 0.2 2.2 1 0 0 1 1 1 1 Dockerin type I domain DUF4934 PF16288.5 gi|219852087|ref|YP_002466519.1| - 0.00017 21.4 16.6 2.5 8.1 0.1 6.2 2 2 7 10 10 10 2 Domain of unknown function (DUF4934) EF-hand_6 PF13405.6 gi|219852087|ref|YP_002466519.1| - 0.00062 19.5 4.3 0.073 13.0 0.3 3.3 3 0 0 3 3 2 1 EF-hand domain EF-hand_1 PF00036.32 gi|219852087|ref|YP_002466519.1| - 0.00087 18.7 8.9 0.03 13.9 0.5 4.1 4 0 0 4 4 4 2 EF hand Death_2 PF14786.6 gi|219852087|ref|YP_002466519.1| - 0.0011 18.9 0.4 26 4.7 0.0 6.0 6 2 2 8 8 7 0 Tube Death domain DUF1952 PF09189.10 gi|219852087|ref|YP_002466519.1| - 0.0045 16.8 14.7 26 4.7 0.0 8.2 9 0 0 9 9 9 0 Domain of unknown function (DUF1952) LVIVD PF08309.11 gi|219852087|ref|YP_002466519.1| - 0.056 12.8 0.3 0.056 12.8 0.3 5.9 6 0 0 6 6 6 0 LVIVD repeat SUKH-3 PF14433.6 gi|219852087|ref|YP_002466519.1| - 0.065 13.7 4.7 53 4.3 0.0 5.2 3 2 1 4 4 4 0 SUKH-3 immunity protein EF-hand_8 PF13833.6 gi|219852087|ref|YP_002466519.1| - 0.62 10.0 3.8 0.2 11.5 0.2 2.0 2 0 0 2 2 2 0 EF-hand domain pair Cytotoxic PF09000.10 gi|219852087|ref|YP_002466519.1| - 5.7 7.3 9.4 1.3e+02 3.0 0.0 6.0 6 1 1 8 8 8 0 Cytotoxic zf-CDGSH PF09360.10 gi|219852088|ref|YP_002466520.1| - 3.6e-40 136.0 3.8 1.4e-19 70.0 0.2 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|219852088|ref|YP_002466520.1| - 1.5e-07 31.4 0.1 6e-07 29.5 0.0 2.0 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Isochorismatase PF00857.20 gi|219852090|ref|YP_002466522.1| - 2.6e-40 138.4 0.1 3e-40 138.2 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family MFS_1 PF07690.16 gi|219852091|ref|YP_002466523.1| - 1.5e-49 168.8 52.8 7.4e-28 97.5 26.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219852091|ref|YP_002466523.1| - 1.2e-13 50.7 37.8 7.1e-08 31.7 17.3 3.1 2 2 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|219852091|ref|YP_002466523.1| - 8.7e-12 44.6 26.2 5.4e-08 32.1 16.7 2.4 1 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|219852091|ref|YP_002466523.1| - 5.8e-08 31.6 26.2 7.7e-08 31.2 25.4 1.4 1 1 1 2 2 2 2 Transmembrane secretion effector LacY_symp PF01306.19 gi|219852091|ref|YP_002466523.1| - 0.00072 18.4 26.8 0.015 14.1 2.8 3.8 2 2 0 4 4 4 3 LacY proton/sugar symporter BT1 PF03092.16 gi|219852091|ref|YP_002466523.1| - 0.032 12.5 0.3 0.032 12.5 0.3 3.3 2 1 1 3 3 3 0 BT1 family Plasmid_stab_B PF10784.9 gi|219852091|ref|YP_002466523.1| - 0.083 12.7 1.9 3.6 7.5 0.0 3.2 3 0 0 3 3 3 0 Plasmid stability protein Gly-zipper_Omp PF13488.6 gi|219852091|ref|YP_002466523.1| - 0.25 11.4 7.5 0.59 10.2 0.2 2.7 2 0 0 2 2 2 0 Glycine zipper HxlR PF01638.17 gi|219852092|ref|YP_002466524.1| - 8.6e-28 96.0 0.2 1.1e-27 95.6 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|219852092|ref|YP_002466524.1| - 3.7e-05 23.6 0.1 6.3e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|219852092|ref|YP_002466524.1| - 6.9e-05 22.6 0.3 0.00014 21.6 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|219852092|ref|YP_002466524.1| - 0.00099 19.0 0.1 0.0016 18.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|219852092|ref|YP_002466524.1| - 0.0013 18.7 0.7 0.0026 17.8 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|219852092|ref|YP_002466524.1| - 0.0029 17.5 0.3 0.006 16.4 0.3 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|219852092|ref|YP_002466524.1| - 0.0062 16.9 0.1 0.012 16.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator Replic_Relax PF13814.6 gi|219852092|ref|YP_002466524.1| - 0.0089 16.1 0.1 0.01 15.9 0.1 1.3 1 0 0 1 1 1 1 Replication-relaxation HTH_34 PF13601.6 gi|219852092|ref|YP_002466524.1| - 0.024 14.8 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|219852092|ref|YP_002466524.1| - 0.027 14.4 0.2 0.074 13.0 0.2 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2250 PF10007.9 gi|219852092|ref|YP_002466524.1| - 0.07 13.2 0.1 0.19 11.9 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2115 PF09888.9 gi|219852093|ref|YP_002466525.1| - 1.2e-55 188.5 0.0 1.5e-55 188.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) HTH_20 PF12840.7 gi|219852094|ref|YP_002466526.1| - 4.8e-06 26.5 0.0 1.1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|219852094|ref|YP_002466526.1| - 0.0053 16.6 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|219852094|ref|YP_002466526.1| - 0.031 14.8 0.1 0.076 13.5 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain SKA2 PF16740.5 gi|219852094|ref|YP_002466526.1| - 0.071 12.9 3.0 0.19 11.5 0.9 2.5 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 2 Snapin_Pallidin PF14712.6 gi|219852094|ref|YP_002466526.1| - 0.086 13.3 1.3 0.22 12.0 1.3 1.7 1 0 0 1 1 1 0 Snapin/Pallidin Vac_Fusion PF02346.16 gi|219852094|ref|YP_002466526.1| - 0.1 12.2 1.7 0.55 9.9 1.7 2.2 1 1 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 Mrr_N PF14338.6 gi|219852094|ref|YP_002466526.1| - 0.12 12.6 1.2 0.26 11.4 0.1 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain AAA_32 PF13654.6 gi|219852094|ref|YP_002466526.1| - 0.16 10.8 1.5 0.2 10.4 0.6 1.6 2 0 0 2 2 2 0 AAA domain FlaC_arch PF05377.11 gi|219852094|ref|YP_002466526.1| - 1.2 9.6 3.5 1.4 9.4 1.2 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) XhlA PF10779.9 gi|219852094|ref|YP_002466526.1| - 1.7 8.9 4.5 1.8 8.9 1.5 2.5 3 1 1 4 4 4 0 Haemolysin XhlA DUF3795 PF12675.7 gi|219852095|ref|YP_002466527.1| - 1.3e-14 54.4 13.5 1.8e-14 53.9 13.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) Nitroreductase PF00881.24 gi|219852096|ref|YP_002466528.1| - 4e-23 82.3 0.0 5.5e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|219852096|ref|YP_002466528.1| - 2e-11 43.2 15.7 2.1e-06 27.3 4.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852096|ref|YP_002466528.1| - 6.7e-10 39.4 5.0 6.9e-05 23.4 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852096|ref|YP_002466528.1| - 3.6e-09 36.6 24.1 9.3e-07 28.9 14.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852096|ref|YP_002466528.1| - 1e-08 34.9 15.1 3.3e-05 23.8 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852096|ref|YP_002466528.1| - 6e-08 32.3 15.8 0.0003 20.7 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219852096|ref|YP_002466528.1| - 8.1e-08 32.6 3.3 0.0049 17.3 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852096|ref|YP_002466528.1| - 1.1e-07 32.7 4.4 0.0001 23.1 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219852096|ref|YP_002466528.1| - 1.2e-07 31.7 11.1 3.3e-07 30.3 11.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852096|ref|YP_002466528.1| - 1.6e-06 28.1 15.1 0.00048 20.4 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852096|ref|YP_002466528.1| - 1.3e-05 25.2 10.1 2.6e-05 24.3 10.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain TM1586_NiRdase PF14512.6 gi|219852096|ref|YP_002466528.1| - 3.6e-05 23.4 0.6 0.18 11.4 0.5 2.8 2 1 1 3 3 3 2 Putative TM nitroreductase Fer4_22 PF17179.4 gi|219852096|ref|YP_002466528.1| - 0.00016 22.4 2.5 0.13 13.1 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219852096|ref|YP_002466528.1| - 0.00088 20.0 20.4 0.0062 17.4 7.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|219852096|ref|YP_002466528.1| - 0.0012 19.3 11.6 0.023 15.2 0.8 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|219852096|ref|YP_002466528.1| - 0.0027 18.2 12.0 0.026 15.1 0.9 2.5 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219852096|ref|YP_002466528.1| - 0.032 15.0 10.6 0.2 12.4 1.3 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|219852096|ref|YP_002466528.1| - 0.34 11.1 13.5 0.34 11.1 3.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain SnoaL_2 PF12680.7 gi|219852097|ref|YP_002466529.1| - 2.2e-09 37.9 0.2 2.4e-09 37.7 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|219852097|ref|YP_002466529.1| - 0.0049 17.0 0.1 0.0068 16.5 0.1 1.3 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|219852097|ref|YP_002466529.1| - 0.0076 16.6 0.0 0.009 16.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) YscW PF09619.10 gi|219852097|ref|YP_002466529.1| - 0.094 13.1 0.0 0.19 12.1 0.0 1.5 1 1 1 2 2 2 0 Type III secretion system lipoprotein chaperone (YscW) SIR2 PF02146.17 gi|219852097|ref|YP_002466529.1| - 0.13 12.2 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Sir2 family FMN_red PF03358.15 gi|219852098|ref|YP_002466530.1| - 1.9e-24 86.2 0.0 2.2e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852098|ref|YP_002466530.1| - 1.3e-13 51.1 0.0 1.4e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold SnoaL_2 PF12680.7 gi|219852099|ref|YP_002466531.1| - 2.4e-08 34.6 0.0 3.2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|219852099|ref|YP_002466531.1| - 0.0017 18.5 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain HxlR PF01638.17 gi|219852100|ref|YP_002466532.1| - 7.5e-33 112.2 0.5 8.5e-33 112.1 0.5 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|219852100|ref|YP_002466532.1| - 2.4e-05 24.2 0.1 3.8e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|219852100|ref|YP_002466532.1| - 0.00018 21.6 0.0 0.00026 21.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|219852100|ref|YP_002466532.1| - 0.00027 20.9 0.2 0.00037 20.4 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|219852100|ref|YP_002466532.1| - 0.00044 20.7 0.0 0.00065 20.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|219852100|ref|YP_002466532.1| - 0.0042 17.0 0.0 0.008 16.1 0.0 1.4 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|219852100|ref|YP_002466532.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|219852100|ref|YP_002466532.1| - 0.076 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.17 gi|219852101|ref|YP_002466533.1| - 2e-34 117.3 0.0 2.5e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|219852101|ref|YP_002466533.1| - 0.00019 21.3 0.1 0.0014 18.5 0.0 2.2 2 1 1 3 3 3 1 MarR family PadR PF03551.14 gi|219852101|ref|YP_002466533.1| - 0.0039 17.1 0.0 0.0065 16.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|219852101|ref|YP_002466533.1| - 0.023 14.9 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|219852101|ref|YP_002466533.1| - 0.08 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|219852101|ref|YP_002466533.1| - 0.16 12.1 0.0 0.25 11.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Nitroreductase PF00881.24 gi|219852102|ref|YP_002466534.1| - 6.7e-24 84.8 0.0 8.8e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|219852102|ref|YP_002466534.1| - 1.1e-11 44.0 9.2 1.6e-05 24.5 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852102|ref|YP_002466534.1| - 2.5e-09 37.1 8.8 4.8e-09 36.2 8.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852102|ref|YP_002466534.1| - 1.2e-08 34.6 10.7 6.7e-05 22.8 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852102|ref|YP_002466534.1| - 1.1e-07 32.3 21.9 2.8e-06 27.8 11.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219852102|ref|YP_002466534.1| - 1.2e-07 31.4 14.1 0.00053 19.9 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852102|ref|YP_002466534.1| - 1.4e-07 32.3 5.1 0.00043 21.1 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|219852102|ref|YP_002466534.1| - 2.9e-06 27.3 12.0 0.00042 20.4 13.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain TM1586_NiRdase PF14512.6 gi|219852102|ref|YP_002466534.1| - 1.3e-05 24.9 0.1 0.006 16.2 0.0 2.7 2 1 1 3 3 3 1 Putative TM nitroreductase Fer4_4 PF12800.7 gi|219852102|ref|YP_002466534.1| - 0.0005 20.4 2.6 0.0005 20.4 2.6 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852102|ref|YP_002466534.1| - 0.00063 19.8 12.4 0.079 13.1 3.5 2.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219852102|ref|YP_002466534.1| - 0.0016 19.0 13.0 0.064 13.8 13.0 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852102|ref|YP_002466534.1| - 0.0068 16.8 12.9 0.14 12.6 13.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219852102|ref|YP_002466534.1| - 0.0086 16.8 0.7 0.0086 16.8 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|219852102|ref|YP_002466534.1| - 0.033 15.0 9.6 1.3 9.9 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219852102|ref|YP_002466534.1| - 0.1 13.1 10.0 0.58 10.7 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|219852102|ref|YP_002466534.1| - 0.22 12.6 16.3 1.3 10.1 4.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Abhydrolase_6 PF12697.7 gi|219852103|ref|YP_002466535.1| - 1.1e-11 45.7 0.6 1.4e-11 45.5 0.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219852103|ref|YP_002466535.1| - 1.2e-07 31.3 0.2 2e-07 30.5 0.2 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|219852103|ref|YP_002466535.1| - 1.6e-06 28.0 0.2 3e-06 27.1 0.3 1.4 2 0 0 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 gi|219852103|ref|YP_002466535.1| - 0.016 14.7 0.1 2.8 7.4 0.0 2.3 1 1 1 2 2 2 0 Dienelactone hydrolase family Lipase_3 PF01764.25 gi|219852103|ref|YP_002466535.1| - 0.046 13.6 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) AXE1 PF05448.12 gi|219852103|ref|YP_002466535.1| - 0.12 11.0 0.2 0.82 8.3 0.0 2.0 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) DUF1428 PF07237.11 gi|219852105|ref|YP_002466537.1| - 4.6e-38 129.6 1.6 5.6e-38 129.3 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) NIPSNAP PF07978.13 gi|219852105|ref|YP_002466537.1| - 0.037 14.2 0.0 0.048 13.9 0.0 1.4 1 1 0 1 1 1 0 NIPSNAP 3-dmu-9_3-mt PF06983.13 gi|219852106|ref|YP_002466538.1| - 2.1e-33 115.3 0.2 1.1e-25 90.5 0.0 2.1 1 1 1 2 2 2 2 3-demethylubiquinone-9 3-methyltransferase FMN_red PF03358.15 gi|219852108|ref|YP_002466540.1| - 4.1e-22 78.6 0.0 1.2e-21 77.1 0.0 1.6 1 1 0 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852108|ref|YP_002466540.1| - 1.7e-16 60.5 0.0 2.2e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|219852108|ref|YP_002466540.1| - 0.00031 21.0 0.0 0.0005 20.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain NADH-G_4Fe-4S_3 PF10588.9 gi|219852108|ref|YP_002466540.1| - 0.14 11.7 2.1 0.28 10.8 2.1 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Virulence_RhuM PF13310.6 gi|219852109|ref|YP_002466541.1| - 3.1e-73 246.1 0.0 4.8e-73 245.5 0.0 1.3 1 0 0 1 1 1 1 Virulence protein RhuM family HAUS6_N PF14661.6 gi|219852109|ref|YP_002466541.1| - 0.12 11.9 0.0 0.44 10.1 0.0 1.8 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus TetR_N PF00440.23 gi|219852110|ref|YP_002466542.1| - 1.7e-15 56.5 0.2 2.9e-15 55.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR PF13972.6 gi|219852110|ref|YP_002466542.1| - 4.2e-05 23.3 0.0 5.9e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor HTH_Tnp_1_2 PF13022.6 gi|219852110|ref|YP_002466542.1| - 0.00067 19.8 0.0 0.0013 18.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_22 PF13309.6 gi|219852110|ref|YP_002466542.1| - 0.049 13.7 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|219852110|ref|YP_002466542.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain ABC_tran PF00005.27 gi|219852111|ref|YP_002466543.1| - 2.6e-30 105.7 0.0 4.5e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852111|ref|YP_002466543.1| - 5.8e-13 49.3 0.6 1.7e-09 37.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|219852111|ref|YP_002466543.1| - 1.5e-05 24.8 0.1 3.2e-05 23.7 0.1 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF4162 PF13732.6 gi|219852111|ref|YP_002466543.1| - 2.3e-05 25.0 0.0 5.7e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|219852111|ref|YP_002466543.1| - 0.00021 21.7 0.1 0.00063 20.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|219852111|ref|YP_002466543.1| - 0.00047 20.4 2.0 0.019 15.3 0.2 3.0 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|219852111|ref|YP_002466543.1| - 0.00095 18.7 0.2 0.97 8.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|219852111|ref|YP_002466543.1| - 0.0031 17.3 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_28 PF13521.6 gi|219852111|ref|YP_002466543.1| - 0.011 15.9 0.0 0.028 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|219852111|ref|YP_002466543.1| - 0.017 14.9 0.1 0.041 13.6 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|219852111|ref|YP_002466543.1| - 0.024 15.0 1.5 0.33 11.4 0.3 3.2 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|219852111|ref|YP_002466543.1| - 0.036 14.6 0.3 0.12 12.8 0.2 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|219852111|ref|YP_002466543.1| - 0.042 13.6 0.1 0.12 12.0 0.1 1.8 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|219852111|ref|YP_002466543.1| - 0.088 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|219852111|ref|YP_002466543.1| - 0.12 12.0 0.1 0.52 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain LPD18 PF18832.1 gi|219852111|ref|YP_002466543.1| - 0.15 12.1 0.0 0.5 10.5 0.0 1.9 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 18 ABC2_membrane PF01061.24 gi|219852112|ref|YP_002466544.1| - 5.1e-28 97.9 21.8 5.1e-28 97.9 21.8 1.6 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219852112|ref|YP_002466544.1| - 6.3e-08 32.1 29.3 6.3e-08 32.1 29.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|219852112|ref|YP_002466544.1| - 0.0019 17.5 16.5 0.0019 17.5 16.5 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Transport_MerF PF11431.8 gi|219852112|ref|YP_002466544.1| - 0.19 11.6 4.6 0.4 10.6 0.1 2.9 2 0 0 2 2 2 0 Membrane transport protein MerF FMN_red PF03358.15 gi|219852113|ref|YP_002466545.1| - 1.9e-26 92.7 0.0 2.5e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852113|ref|YP_002466545.1| - 4.9e-09 36.2 0.0 6e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|219852113|ref|YP_002466545.1| - 0.0068 16.2 0.1 0.01 15.6 0.1 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) FMN_red PF03358.15 gi|219852114|ref|YP_002466546.1| - 4.9e-18 65.4 0.0 6.2e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852114|ref|YP_002466546.1| - 1.2e-10 41.5 0.0 1.5e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold pEK499_p136 PF18736.1 gi|219852115|ref|YP_002466547.1| - 0.014 15.1 0.1 0.046 13.3 0.0 1.9 2 0 0 2 2 2 0 HEPN pEK499 p136 Aminotran_5 PF00266.19 gi|219852117|ref|YP_002466549.1| - 1.9e-122 408.8 0.1 5.5e-122 407.3 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V PAPS_reduct PF01507.19 gi|219852117|ref|YP_002466549.1| - 1.1e-31 110.2 0.0 1.8e-31 109.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Aminotran_1_2 PF00155.21 gi|219852117|ref|YP_002466549.1| - 1.3e-08 34.4 0.0 2.3e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219852117|ref|YP_002466549.1| - 3.1e-08 33.3 0.4 7.7e-08 32.0 0.4 1.6 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|219852117|ref|YP_002466549.1| - 4.4e-07 29.5 0.0 7.7e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|219852117|ref|YP_002466549.1| - 3.1e-05 22.7 0.1 5.2e-05 22.0 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme VPS53_C PF16854.5 gi|219852117|ref|YP_002466549.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 53 C-terminus Pyridoxal_deC PF00282.19 gi|219852117|ref|YP_002466549.1| - 0.035 12.8 0.0 0.058 12.1 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain SepSecS PF05889.13 gi|219852117|ref|YP_002466549.1| - 0.05 12.3 0.0 0.094 11.4 0.0 1.4 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS FdhD-NarQ PF02634.15 gi|219852118|ref|YP_002466550.1| - 4.1e-44 151.1 0.7 4.7e-44 150.8 0.7 1.0 1 0 0 1 1 1 1 FdhD/NarQ family PAS_4 PF08448.10 gi|219852119|ref|YP_002466551.1| - 1.5e-59 199.1 0.0 1.7e-17 63.6 0.0 5.9 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|219852119|ref|YP_002466551.1| - 3.5e-40 136.5 0.0 1.4e-10 41.4 0.0 6.7 6 2 0 6 6 5 5 PAS domain PAS PF00989.25 gi|219852119|ref|YP_002466551.1| - 2.4e-31 108.0 0.0 1.7e-07 31.2 0.0 6.7 6 1 0 6 6 6 4 PAS fold PAS_8 PF13188.7 gi|219852119|ref|YP_002466551.1| - 1.8e-27 94.8 0.3 5.8e-06 26.2 0.0 5.7 5 0 0 5 5 5 5 PAS domain Response_reg PF00072.24 gi|219852119|ref|YP_002466551.1| - 8.7e-21 74.2 0.0 2.3e-20 72.8 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219852119|ref|YP_002466551.1| - 9.8e-13 48.6 0.3 8.4e-11 42.4 0.1 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|219852119|ref|YP_002466551.1| - 3.7e-12 46.4 0.3 0.015 15.4 0.0 6.9 7 1 0 7 7 6 2 PAS fold PAS_3 PF08447.12 gi|219852119|ref|YP_002466551.1| - 2.1e-07 31.1 0.0 0.095 13.0 0.0 5.5 4 1 0 4 4 4 1 PAS fold PAS_10 PF13596.6 gi|219852119|ref|YP_002466551.1| - 9.6e-05 22.9 0.1 9.9 6.8 0.0 6.2 5 3 1 6 6 6 0 PAS domain dCache_1 PF02743.18 gi|219852119|ref|YP_002466551.1| - 0.014 15.2 0.1 3.7 7.3 0.0 3.9 5 1 0 5 5 4 0 Cache domain GAF PF01590.26 gi|219852119|ref|YP_002466551.1| - 0.034 14.8 0.0 0.68 10.6 0.0 2.9 2 0 0 2 2 2 0 GAF domain Nmad5 PF18757.1 gi|219852119|ref|YP_002466551.1| - 0.061 13.5 4.1 1.8 8.7 0.1 2.9 3 0 0 3 3 3 0 Nucleotide modification associated domain 5 Rootletin PF15035.6 gi|219852119|ref|YP_002466551.1| - 0.072 13.1 10.1 0.78 9.7 0.4 3.1 3 0 0 3 3 3 0 Ciliary rootlet component, centrosome cohesion sCache_3_3 PF17202.4 gi|219852119|ref|YP_002466551.1| - 0.095 13.1 0.0 2.1 8.8 0.0 3.1 3 0 0 3 3 3 0 Single cache domain 3 HALZ PF02183.18 gi|219852119|ref|YP_002466551.1| - 0.16 12.3 5.2 0.27 11.5 1.4 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper DLP_helical PF18709.1 gi|219852119|ref|YP_002466551.1| - 0.16 11.2 6.7 1.9 7.6 0.0 2.7 3 0 0 3 3 2 0 Dynamin-like helical domain HisKA_4TM PF16926.5 gi|219852119|ref|YP_002466551.1| - 0.18 11.3 0.0 0.35 10.4 0.0 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase DUF3450 PF11932.8 gi|219852119|ref|YP_002466551.1| - 0.27 10.5 9.3 2 7.7 1.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|219852119|ref|YP_002466551.1| - 0.49 9.2 11.6 0.5 9.2 2.2 2.7 2 0 0 2 2 2 0 Spc7 kinetochore protein OmpH PF03938.14 gi|219852119|ref|YP_002466551.1| - 0.6 10.4 16.7 0.9 9.9 2.5 3.5 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) PEARLI-4 PF05278.12 gi|219852119|ref|YP_002466551.1| - 0.82 9.2 10.7 0.55 9.8 1.1 2.6 2 0 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) CENP-Q PF13094.6 gi|219852119|ref|YP_002466551.1| - 0.85 9.8 5.4 18 5.5 0.9 2.7 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Stevor PF17410.2 gi|219852119|ref|YP_002466551.1| - 0.87 9.1 5.1 1.6 8.2 0.2 2.4 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame Fmp27_WPPW PF10359.9 gi|219852119|ref|YP_002466551.1| - 1.4 7.7 4.1 1 8.1 0.3 2.1 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain SHE3 PF17078.5 gi|219852119|ref|YP_002466551.1| - 2 8.1 10.8 4.2 7.0 2.5 2.7 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 DivIC PF04977.15 gi|219852119|ref|YP_002466551.1| - 3.1 7.6 13.4 0.84 9.5 2.3 3.3 2 0 0 2 2 2 0 Septum formation initiator GARP PF16731.5 gi|219852119|ref|YP_002466551.1| - 3.6 7.2 7.1 4 7.1 0.3 2.5 2 0 0 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma DUF87 PF01935.17 gi|219852120|ref|YP_002466552.1| - 2.1e-25 90.2 0.0 2.9e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|219852120|ref|YP_002466552.1| - 0.00041 19.4 0.0 0.00073 18.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|219852120|ref|YP_002466552.1| - 0.12 11.0 0.0 0.2 10.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_11 PF13086.6 gi|219852121|ref|YP_002466553.1| - 4.4e-22 79.1 0.0 3.9e-13 49.8 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_12 PF13087.6 gi|219852121|ref|YP_002466553.1| - 2.9e-19 69.5 0.0 5.3e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|219852121|ref|YP_002466553.1| - 5.2e-18 65.4 0.0 9.6e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|219852121|ref|YP_002466553.1| - 8.2e-15 55.4 0.0 1.4e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 gi|219852121|ref|YP_002466553.1| - 1.6e-06 27.9 0.0 2.6e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.14 gi|219852121|ref|YP_002466553.1| - 1.8e-06 27.9 0.0 3.7e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Helicase UvrD_C_2 PF13538.6 gi|219852121|ref|YP_002466553.1| - 2.1e-05 24.3 0.1 5.9e-05 22.8 0.0 1.8 2 0 0 2 2 1 1 UvrD-like helicase C-terminal domain PhoH PF02562.16 gi|219852121|ref|YP_002466553.1| - 3.6e-05 23.3 0.0 0.00087 18.8 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.6 gi|219852121|ref|YP_002466553.1| - 3.6e-05 24.0 0.0 0.00021 21.5 0.0 2.3 2 1 0 2 2 1 1 AAA domain Viral_helicase1 PF01443.18 gi|219852121|ref|YP_002466553.1| - 8e-05 22.5 0.0 0.1 12.3 0.0 3.3 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase DEAD PF00270.29 gi|219852121|ref|YP_002466553.1| - 0.0002 21.2 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|219852121|ref|YP_002466553.1| - 0.00059 19.5 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|219852121|ref|YP_002466553.1| - 0.0015 18.5 0.0 0.0029 17.6 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily ResIII PF04851.15 gi|219852121|ref|YP_002466553.1| - 0.0026 17.8 0.0 0.0053 16.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit cobW PF02492.19 gi|219852121|ref|YP_002466553.1| - 0.0059 16.2 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain PIF1 PF05970.14 gi|219852121|ref|YP_002466553.1| - 0.0078 15.4 0.0 0.48 9.5 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.6 gi|219852121|ref|YP_002466553.1| - 0.0082 16.5 0.0 0.026 14.9 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|219852121|ref|YP_002466553.1| - 0.02 15.3 0.0 0.041 14.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|219852121|ref|YP_002466553.1| - 0.021 14.6 0.0 0.15 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|219852121|ref|YP_002466553.1| - 0.027 13.5 0.0 0.051 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|219852121|ref|YP_002466553.1| - 0.028 14.9 0.0 0.053 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|219852121|ref|YP_002466553.1| - 0.065 12.5 0.0 1.4 8.1 0.0 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.18 gi|219852121|ref|YP_002466553.1| - 0.089 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|219852121|ref|YP_002466553.1| - 0.092 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|219852121|ref|YP_002466553.1| - 0.14 11.5 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 KaiC Poty_coat PF00767.18 gi|219852121|ref|YP_002466553.1| - 0.15 11.6 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Potyvirus coat protein NACHT PF05729.12 gi|219852121|ref|YP_002466553.1| - 0.15 11.9 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Spt46 PF17734.1 gi|219852122|ref|YP_002466554.1| - 0.38 10.5 7.0 1.6 8.5 0.7 2.4 2 0 0 2 2 2 0 Spermatogenesis-associated protein 46 Response_reg PF00072.24 gi|219852123|ref|YP_002466555.1| - 1.1e-35 122.2 0.1 3.6e-19 69.0 0.0 3.1 2 1 1 3 3 3 2 Response regulator receiver domain PAS_4 PF08448.10 gi|219852123|ref|YP_002466555.1| - 5.6e-22 78.1 1.2 7.9e-10 39.0 0.2 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|219852123|ref|YP_002466555.1| - 8e-20 71.4 0.0 1.8e-19 70.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219852123|ref|YP_002466555.1| - 1.1e-14 54.3 0.4 2.1e-09 37.3 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852123|ref|YP_002466555.1| - 3e-13 49.9 0.1 1.1e-05 25.6 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|219852123|ref|YP_002466555.1| - 1e-07 31.8 0.2 0.0038 17.2 0.1 3.1 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|219852123|ref|YP_002466555.1| - 1.6e-07 31.4 0.8 0.0071 16.5 0.0 4.1 4 1 0 4 4 4 2 PAS fold HisKA PF00512.25 gi|219852123|ref|YP_002466555.1| - 6.7e-07 29.2 0.5 4.1e-06 26.7 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|219852123|ref|YP_002466555.1| - 4.7e-05 23.9 0.1 0.012 16.2 0.0 2.7 3 0 0 3 3 2 1 PAS domain PAS_3 PF08447.12 gi|219852123|ref|YP_002466555.1| - 5.6e-05 23.4 0.0 0.00021 21.5 0.0 2.1 1 0 0 1 1 1 1 PAS fold DUF1699 PF08004.11 gi|219852123|ref|YP_002466555.1| - 0.072 12.8 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1699) Response_reg PF00072.24 gi|219852124|ref|YP_002466556.1| - 5.5e-17 61.9 0.0 7.2e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219852125|ref|YP_002466557.1| - 6e-11 42.8 0.0 1.2e-10 41.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|219852125|ref|YP_002466557.1| - 2.5e-07 30.9 0.0 5.8e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold Response_reg PF00072.24 gi|219852125|ref|YP_002466557.1| - 2.8e-07 30.7 0.0 7.4e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain SPOB_a PF14689.6 gi|219852125|ref|YP_002466557.1| - 1.9e-05 24.3 1.6 6.1e-05 22.6 1.4 2.0 1 1 1 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_8 PF13188.7 gi|219852125|ref|YP_002466557.1| - 0.002 18.1 0.0 0.0093 16.0 0.0 2.2 1 1 0 1 1 1 1 PAS domain HisKA_4TM PF16926.5 gi|219852125|ref|YP_002466557.1| - 0.0037 16.9 0.0 0.0058 16.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_9 PF13426.7 gi|219852125|ref|YP_002466557.1| - 0.0039 17.4 0.0 0.024 14.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|219852125|ref|YP_002466557.1| - 0.014 15.4 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.6 gi|219852125|ref|YP_002466557.1| - 0.023 14.5 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|219852125|ref|YP_002466557.1| - 0.044 13.8 0.0 0.16 12.0 0.0 2.0 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|219852125|ref|YP_002466557.1| - 0.13 12.3 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Renin_r PF07850.14 gi|219852126|ref|YP_002466558.1| - 1.8 9.2 6.2 0.56 10.8 3.3 1.7 1 1 1 2 2 2 0 Renin receptor-like protein TPP_enzyme_C PF02775.21 gi|219852128|ref|YP_002466560.1| - 1.7e-26 92.8 0.0 4.3e-26 91.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|219852128|ref|YP_002466560.1| - 4.1e-11 42.8 0.4 7.9e-11 41.9 0.3 1.5 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal E1_dh PF00676.20 gi|219852128|ref|YP_002466560.1| - 0.087 11.8 0.1 0.44 9.4 0.0 1.8 1 1 1 2 2 2 0 Dehydrogenase E1 component POR_N PF01855.19 gi|219852129|ref|YP_002466561.1| - 9.2e-52 176.1 0.1 1.6e-51 175.3 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|219852129|ref|YP_002466561.1| - 1.2e-23 84.1 0.1 6.1e-23 81.8 0.1 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|219852129|ref|YP_002466561.1| - 3.3e-05 23.6 0.1 6e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|219852129|ref|YP_002466561.1| - 0.00068 19.9 0.0 0.0017 18.6 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|219852129|ref|YP_002466561.1| - 0.09 12.7 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain PocR PF10114.9 gi|219852130|ref|YP_002466562.1| - 3.9e-37 127.5 0.0 8.9e-37 126.4 0.0 1.7 1 0 0 1 1 1 1 Sensory domain found in PocR Response_reg PF00072.24 gi|219852130|ref|YP_002466562.1| - 6.5e-25 87.5 0.0 1.7e-24 86.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219852130|ref|YP_002466562.1| - 1.3e-22 80.0 0.0 3.5e-12 46.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219852130|ref|YP_002466562.1| - 1.4e-17 63.7 0.1 2.7e-08 33.8 0.0 3.7 3 1 1 4 4 4 2 PAS fold PAS_4 PF08448.10 gi|219852130|ref|YP_002466562.1| - 1.8e-17 63.6 0.0 5.8e-08 33.0 0.0 3.7 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|219852130|ref|YP_002466562.1| - 3.4e-11 43.6 0.0 8e-11 42.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|219852130|ref|YP_002466562.1| - 1.4e-10 40.9 0.1 1.4e-05 25.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|219852130|ref|YP_002466562.1| - 1.6e-09 37.9 0.0 5.9e-06 26.5 0.0 3.7 3 1 1 4 4 4 1 PAS fold SPOB_a PF14689.6 gi|219852130|ref|YP_002466562.1| - 0.0017 18.0 0.2 0.007 16.0 0.0 2.1 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_11 PF14598.6 gi|219852130|ref|YP_002466562.1| - 0.0096 16.0 0.0 0.025 14.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|219852130|ref|YP_002466562.1| - 0.033 14.2 0.2 0.033 14.2 0.2 2.5 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|219852130|ref|YP_002466562.1| - 0.058 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|219852130|ref|YP_002466562.1| - 0.067 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Helitron_like_N PF14214.6 gi|219852130|ref|YP_002466562.1| - 0.19 11.9 1.3 0.25 11.6 0.1 1.8 2 0 0 2 2 2 0 Helitron helicase-like domain at N-terminus AATase PF07247.12 gi|219852132|ref|YP_002466564.1| - 3.4e-07 29.2 0.0 4.2e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Alcohol acetyltransferase DUF1283 PF06932.11 gi|219852132|ref|YP_002466564.1| - 8.8 6.6 6.9 0.84 9.9 0.3 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1283) Lactamase_B PF00753.27 gi|219852134|ref|YP_002466566.1| - 1.8e-09 37.9 0.2 3e-09 37.2 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219852134|ref|YP_002466566.1| - 4.2e-08 32.9 0.5 2.1e-07 30.7 0.5 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|219852134|ref|YP_002466566.1| - 0.01 15.3 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|219852134|ref|YP_002466566.1| - 0.16 11.8 0.1 15 5.4 0.0 2.6 2 1 0 3 3 3 0 Beta-lactamase superfamily domain DUF2284 PF10050.9 gi|219852135|ref|YP_002466567.1| - 2.6e-48 163.9 0.2 3.1e-48 163.6 0.2 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) OsmC PF02566.19 gi|219852136|ref|YP_002466568.1| - 2.3e-13 50.5 0.0 3.6e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein LCM PF04072.14 gi|219852138|ref|YP_002466570.1| - 5.1e-52 176.6 0.0 6.6e-52 176.2 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.23 gi|219852139|ref|YP_002466571.1| - 2.7e-15 55.9 0.0 4e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|219852139|ref|YP_002466571.1| - 0.0002 21.6 0.0 0.00037 20.7 0.0 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal HTH_17 PF12728.7 gi|219852139|ref|YP_002466571.1| - 0.021 15.0 0.1 0.35 11.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_C_17 PF17922.1 gi|219852139|ref|YP_002466571.1| - 0.025 14.6 0.7 0.046 13.8 0.4 1.6 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|219852139|ref|YP_002466571.1| - 0.029 15.0 1.7 0.072 13.7 1.6 1.9 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PCI PF01399.27 gi|219852139|ref|YP_002466571.1| - 0.038 14.5 0.2 1.2 9.7 0.0 2.4 2 1 0 2 2 2 0 PCI domain DUF4197 PF13852.6 gi|219852139|ref|YP_002466571.1| - 0.039 13.6 0.1 0.063 13.0 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4197) 3HCDH PF00725.22 gi|219852139|ref|YP_002466571.1| - 0.064 13.9 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TetR_C_31 PF17940.1 gi|219852139|ref|YP_002466571.1| - 0.14 12.3 0.2 0.36 11.1 0.2 1.6 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Glycos_transf_2 PF00535.26 gi|219852140|ref|YP_002466572.1| - 2.3e-29 102.4 0.0 3.1e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219852140|ref|YP_002466572.1| - 4e-12 46.5 0.0 5.1e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219852140|ref|YP_002466572.1| - 6.2e-07 29.2 0.0 8e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|219852140|ref|YP_002466572.1| - 0.00015 21.3 0.0 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|219852140|ref|YP_002466572.1| - 0.012 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|219852141|ref|YP_002466573.1| - 2.9e-16 59.7 0.0 5.6e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219852141|ref|YP_002466573.1| - 1.2e-09 38.5 0.0 3.3e-09 37.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219852141|ref|YP_002466573.1| - 5.6e-05 23.6 0.0 0.00011 22.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2207 PF09972.9 gi|219852141|ref|YP_002466573.1| - 1.7 7.3 4.2 2.4 6.8 4.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF99 PF01949.16 gi|219852142|ref|YP_002466574.1| - 2.8e-66 222.4 0.0 3.2e-66 222.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF4147 PF13660.6 gi|219852142|ref|YP_002466574.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) Pilin_N PF07790.11 gi|219852143|ref|YP_002466575.1| - 8.3e-07 29.8 0.0 1.2e-06 29.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF1356 PF07092.12 gi|219852143|ref|YP_002466575.1| - 0.02 14.2 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) B-block_TFIIIC PF04182.12 gi|219852144|ref|YP_002466576.1| - 8.5e-07 29.1 0.1 1.2e-06 28.6 0.1 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|219852144|ref|YP_002466576.1| - 2e-05 24.0 0.1 3e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|219852144|ref|YP_002466576.1| - 4.8e-05 23.2 0.0 6.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|219852144|ref|YP_002466576.1| - 0.00048 20.0 0.0 0.00065 19.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_micro PF17007.5 gi|219852144|ref|YP_002466576.1| - 0.017 14.0 0.0 0.02 13.7 0.0 1.0 1 0 0 1 1 1 0 HTH-like TrmB PF01978.19 gi|219852144|ref|YP_002466576.1| - 0.1 12.5 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|219852144|ref|YP_002466576.1| - 0.14 12.6 0.0 0.19 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain LSM PF01423.22 gi|219852145|ref|YP_002466577.1| - 5e-17 61.3 0.3 5.5e-17 61.2 0.3 1.1 1 0 0 1 1 1 1 LSM domain Pectate_lyase_3 PF12708.7 gi|219852146|ref|YP_002466578.1| - 5.8e-11 42.6 15.7 3e-06 27.2 4.4 3.4 3 1 0 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|219852146|ref|YP_002466578.1| - 2e-08 34.3 17.5 3.3e-07 30.3 7.8 3.3 1 1 2 3 3 3 3 Right handed beta helix region FMN_red PF03358.15 gi|219852147|ref|YP_002466579.1| - 2.3e-31 108.6 0.0 3e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852147|ref|YP_002466579.1| - 3.2e-10 40.1 0.0 4.8e-10 39.5 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Lactamase_B PF00753.27 gi|219852148|ref|YP_002466580.1| - 7.6e-26 91.3 1.0 9.9e-26 91.0 1.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219852148|ref|YP_002466580.1| - 7.4e-06 25.6 0.4 1.1e-05 25.1 0.4 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|219852148|ref|YP_002466580.1| - 0.017 14.6 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Alk_phosphatase PF00245.20 gi|219852148|ref|YP_002466580.1| - 0.14 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Alkaline phosphatase TraB PF01963.17 gi|219852149|ref|YP_002466581.1| - 9.8e-25 87.9 0.0 1.5e-24 87.3 0.0 1.2 1 0 0 1 1 1 1 TraB family CxxCxxCC PF03692.15 gi|219852150|ref|YP_002466582.1| - 1.6e-11 44.7 0.0 4.2e-11 43.4 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain GATase PF00117.28 gi|219852151|ref|YP_002466583.1| - 8.5e-29 100.7 0.0 9.7e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|219852151|ref|YP_002466583.1| - 7.9e-10 38.8 2.1 5.9e-09 36.0 1.4 2.2 2 1 0 2 2 2 1 Peptidase C26 DUF5516 PF17637.2 gi|219852151|ref|YP_002466583.1| - 0.024 14.4 2.0 0.046 13.5 2.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5516) PgpA PF04608.13 gi|219852153|ref|YP_002466585.1| - 5.1e-10 39.5 0.1 8.1e-10 38.9 0.1 1.3 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|219852154|ref|YP_002466586.1| - 1.7e-38 132.9 17.5 2e-38 132.7 17.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NIR_SIR PF01077.22 gi|219852155|ref|YP_002466587.1| - 2.5e-19 69.4 0.2 3.1e-19 69.0 0.2 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|219852155|ref|YP_002466587.1| - 7.5e-18 64.2 0.3 1.5e-17 63.2 0.1 1.7 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|219852155|ref|YP_002466587.1| - 9.4e-12 44.2 22.9 2.9e-07 30.0 1.8 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852155|ref|YP_002466587.1| - 2.3e-09 37.2 32.6 7.9e-07 29.1 10.9 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219852155|ref|YP_002466587.1| - 1.1e-08 35.5 21.2 8.7e-07 29.4 10.8 3.8 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852155|ref|YP_002466587.1| - 7.7e-07 29.5 7.2 0.0011 19.4 0.0 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852155|ref|YP_002466587.1| - 9.6e-07 29.6 10.2 0.00032 21.6 0.2 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|219852155|ref|YP_002466587.1| - 1.9e-06 27.8 15.5 7.6e-06 25.9 0.1 3.3 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852155|ref|YP_002466587.1| - 3.3e-06 26.9 24.8 5e-05 23.2 1.9 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852155|ref|YP_002466587.1| - 3.3e-06 26.8 20.8 8.5e-05 22.4 2.0 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852155|ref|YP_002466587.1| - 0.00026 21.1 22.2 0.00057 20.0 11.6 2.6 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219852155|ref|YP_002466587.1| - 0.00052 20.5 11.7 0.0097 16.4 0.2 2.8 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852155|ref|YP_002466587.1| - 0.0023 18.3 13.5 0.0043 17.5 3.0 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|219852155|ref|YP_002466587.1| - 0.015 15.4 2.5 0.038 14.1 2.5 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219852155|ref|YP_002466587.1| - 0.023 15.6 26.7 0.024 15.5 4.4 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219852155|ref|YP_002466587.1| - 0.045 13.9 10.8 0.21 11.8 10.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219852155|ref|YP_002466587.1| - 0.067 13.9 15.5 0.073 13.8 0.4 3.9 3 1 1 4 4 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|219852155|ref|YP_002466587.1| - 0.42 11.5 13.2 3.3 8.6 0.9 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219852155|ref|YP_002466587.1| - 0.58 10.7 13.7 0.25 11.9 1.4 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I GTP_EFTU PF00009.27 gi|219852157|ref|YP_002466589.1| - 2.8e-55 186.9 0.0 3.7e-55 186.5 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|219852157|ref|YP_002466589.1| - 7e-39 132.6 0.3 2.8e-38 130.7 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|219852157|ref|YP_002466589.1| - 2e-18 66.5 0.6 2.2e-17 63.2 0.3 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|219852157|ref|YP_002466589.1| - 8.5e-05 22.6 0.0 0.00087 19.4 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|219852157|ref|YP_002466589.1| - 0.0026 17.1 0.1 0.024 14.0 0.1 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.6 gi|219852157|ref|YP_002466589.1| - 0.0089 15.9 0.8 0.027 14.3 0.8 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 RsgA_GTPase PF03193.16 gi|219852157|ref|YP_002466589.1| - 0.028 14.3 0.2 0.1 12.5 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 gi|219852157|ref|YP_002466589.1| - 0.14 11.8 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S10 PF00338.22 gi|219852158|ref|YP_002466590.1| - 1.3e-26 92.7 0.0 1.5e-26 92.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|219852158|ref|YP_002466590.1| - 0.0099 16.7 0.0 0.021 15.6 0.0 1.6 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain PMT_2 PF13231.6 gi|219852159|ref|YP_002466591.1| - 1.1e-19 71.2 16.6 1.1e-19 71.2 16.6 3.2 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|219852159|ref|YP_002466591.1| - 2.2e-11 43.8 17.6 2.7e-11 43.5 15.6 2.2 1 1 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase XhlA PF10779.9 gi|219852159|ref|YP_002466591.1| - 0.79 10.0 3.3 1.8 8.8 3.3 1.6 1 0 0 1 1 1 0 Haemolysin XhlA MarC PF01914.17 gi|219852160|ref|YP_002466592.1| - 7.8e-56 188.7 16.6 8.8e-56 188.5 16.6 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein MLANA PF14991.6 gi|219852160|ref|YP_002466592.1| - 0.014 15.7 0.4 0.043 14.1 0.4 1.9 1 0 0 1 1 1 0 Protein melan-A RAMP4 PF06624.12 gi|219852160|ref|YP_002466592.1| - 0.085 12.9 0.0 0.085 12.9 0.0 2.2 3 0 0 3 3 3 0 Ribosome associated membrane protein RAMP4 DUF3522 PF12036.8 gi|219852160|ref|YP_002466592.1| - 0.28 11.4 8.3 0.058 13.7 1.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3522) DUF443 PF04276.12 gi|219852160|ref|YP_002466592.1| - 3.9 7.2 10.1 0.11 12.3 2.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF443) Tad PF13400.6 gi|219852161|ref|YP_002466593.1| - 0.045 14.1 0.6 0.045 14.1 0.6 2.2 2 1 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF2207 PF09972.9 gi|219852161|ref|YP_002466593.1| - 0.74 8.5 4.5 0.81 8.4 4.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|219852161|ref|YP_002466593.1| - 0.76 9.8 9.7 0.83 9.7 9.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III CN_hydrolase PF00795.22 gi|219852162|ref|YP_002466594.1| - 1.4e-40 139.3 0.1 1.7e-40 139.0 0.1 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase YdjM PF04307.14 gi|219852163|ref|YP_002466595.1| - 2.4e-23 82.3 0.4 3.6e-23 81.7 0.4 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PALP PF00291.25 gi|219852164|ref|YP_002466596.1| - 1.5e-78 264.2 5.4 1.7e-78 264.0 5.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.6 gi|219852164|ref|YP_002466596.1| - 0.041 13.3 0.7 0.1 12.1 0.7 1.7 1 0 0 1 1 1 0 zinc-ribbon domain Prok-E2_C PF14459.6 gi|219852164|ref|YP_002466596.1| - 0.042 14.0 0.2 0.089 13.0 0.2 1.5 1 0 0 1 1 1 0 Prokaryotic E2 family C zf-C2HC5 PF06221.13 gi|219852164|ref|YP_002466596.1| - 0.073 13.1 0.2 0.18 11.8 0.2 1.7 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF4314 PF14192.6 gi|219852165|ref|YP_002466597.1| - 0.05 13.5 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4314) FlgD_ig PF13860.6 gi|219852165|ref|YP_002466597.1| - 0.054 13.4 0.9 0.84 9.5 0.3 2.5 2 1 0 2 2 2 0 FlgD Ig-like domain Mucin_bdg PF03272.13 gi|219852165|ref|YP_002466597.1| - 0.069 13.2 0.8 9.9 6.2 0.2 2.1 2 0 0 2 2 2 0 Putative mucin or carbohydrate-binding module AFOR_C PF01314.18 gi|219852167|ref|YP_002466599.1| - 3.9e-134 447.4 0.0 5.2e-134 447.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|219852167|ref|YP_002466599.1| - 8.4e-72 241.2 0.0 1.5e-71 240.4 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|219852168|ref|YP_002466600.1| - 2.6e-14 53.6 0.0 3e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family eRF1_1 PF03463.15 gi|219852169|ref|YP_002466601.1| - 1.6e-25 89.6 0.0 2.9e-25 88.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|219852169|ref|YP_002466601.1| - 7.7e-17 61.8 0.1 2.5e-16 60.2 0.1 1.8 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|219852169|ref|YP_002466601.1| - 0.048 14.0 0.0 0.12 12.7 0.0 1.6 2 0 0 2 2 2 0 eRF1 domain 2 FbpA PF05833.11 gi|219852170|ref|YP_002466602.1| - 8.4e-54 183.0 0.0 1.1e-53 182.6 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|219852170|ref|YP_002466602.1| - 1.7e-23 83.4 0.0 3.1e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|219852170|ref|YP_002466602.1| - 0.00084 19.5 0.0 0.0018 18.4 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain Phage_holin_3_3 PF16083.5 gi|219852171|ref|YP_002466603.1| - 0.025 14.7 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 LydA holin phage, holin superfamily III CPP1-like PF11833.8 gi|219852171|ref|YP_002466603.1| - 0.2 11.3 1.8 1.5 8.4 0.6 2.0 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like FUSC_2 PF13515.6 gi|219852171|ref|YP_002466603.1| - 0.43 10.7 6.7 2.3 8.4 6.7 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein-like ABC_tran PF00005.27 gi|219852172|ref|YP_002466604.1| - 3.4e-39 134.5 0.0 3e-18 66.6 0.0 2.8 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|219852172|ref|YP_002466604.1| - 2.1e-13 50.3 4.7 3.3e-05 23.4 0.0 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|219852172|ref|YP_002466604.1| - 8.3e-12 44.7 2.8 1.8e-11 43.6 2.8 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|219852172|ref|YP_002466604.1| - 4.8e-08 32.5 3.2 4.8e-08 32.5 3.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_21 PF13304.6 gi|219852172|ref|YP_002466604.1| - 2.4e-07 30.9 6.2 0.3 10.8 0.0 4.2 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system Fer4_6 PF12837.7 gi|219852172|ref|YP_002466604.1| - 2.5e-06 27.3 10.1 8.1e-06 25.7 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852172|ref|YP_002466604.1| - 3.1e-05 24.0 8.7 5.3e-05 23.3 8.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219852172|ref|YP_002466604.1| - 0.00081 19.3 1.1 0.00081 19.3 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852172|ref|YP_002466604.1| - 0.00086 19.8 8.5 0.0018 18.8 8.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852172|ref|YP_002466604.1| - 0.0013 18.9 8.1 0.0035 17.5 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|219852172|ref|YP_002466604.1| - 0.0013 18.4 0.3 1 9.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.6 gi|219852172|ref|YP_002466604.1| - 0.0017 18.5 9.6 0.0017 18.4 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|219852172|ref|YP_002466604.1| - 0.0026 17.6 0.2 2.7 7.6 0.1 2.9 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|219852172|ref|YP_002466604.1| - 0.0036 17.6 0.1 0.47 10.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|219852172|ref|YP_002466604.1| - 0.0068 16.8 0.1 4.2 7.8 0.0 2.6 2 0 0 2 2 2 1 RNA helicase RsgA_GTPase PF03193.16 gi|219852172|ref|YP_002466604.1| - 0.0093 15.9 1.6 2.2 8.2 0.2 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|219852172|ref|YP_002466604.1| - 0.01 15.6 1.9 2.5 7.9 0.1 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852172|ref|YP_002466604.1| - 0.024 15.0 1.7 2.7 8.3 0.1 2.7 2 2 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 gi|219852172|ref|YP_002466604.1| - 0.066 13.4 0.0 26 5.1 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|219852172|ref|YP_002466604.1| - 0.087 13.3 3.0 9.7 6.6 1.8 2.5 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|219852172|ref|YP_002466604.1| - 0.1 12.8 0.5 20 5.4 0.1 2.6 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|219852172|ref|YP_002466604.1| - 0.14 12.0 0.2 5.1 7.0 0.1 2.5 2 1 1 3 3 3 0 Rad17 P-loop domain AAA PF00004.29 gi|219852172|ref|YP_002466604.1| - 0.16 12.4 0.2 29 5.1 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|219852172|ref|YP_002466604.1| - 0.16 11.9 1.3 3.1 7.7 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|219852172|ref|YP_002466604.1| - 0.21 11.6 1.0 19 5.3 0.0 3.1 2 1 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|219852172|ref|YP_002466604.1| - 0.33 11.1 3.0 2.1 8.5 0.1 3.1 4 0 0 4 4 3 0 AAA domain MMR_HSR1 PF01926.23 gi|219852172|ref|YP_002466604.1| - 0.4 10.8 1.8 6.4 6.9 0.2 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase MukB PF04310.12 gi|219852172|ref|YP_002466604.1| - 0.73 9.6 2.2 2.8 7.7 0.1 2.6 3 0 0 3 3 3 0 MukB N-terminal Fer4_22 PF17179.4 gi|219852172|ref|YP_002466604.1| - 0.77 10.7 5.0 0.24 12.3 2.0 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF87 PF01935.17 gi|219852172|ref|YP_002466604.1| - 1.1 9.3 8.8 8.3 6.4 1.0 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain Fer4_4 PF12800.7 gi|219852172|ref|YP_002466604.1| - 1.6 9.4 13.5 0.23 12.1 3.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852172|ref|YP_002466604.1| - 1.6 9.7 10.5 0.15 13.0 1.6 2.4 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain MeaB PF03308.16 gi|219852172|ref|YP_002466604.1| - 1.7 7.5 4.4 8.5 5.3 0.3 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|219852172|ref|YP_002466604.1| - 1.9 8.0 3.6 4.5 6.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain Fer4_17 PF13534.6 gi|219852172|ref|YP_002466604.1| - 2.4 8.7 10.3 19 5.9 10.3 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852172|ref|YP_002466604.1| - 2.9 8.4 7.5 1.5 9.3 2.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain RSS_P20 PF11757.8 gi|219852173|ref|YP_002466605.1| - 0.038 14.4 0.0 0.078 13.4 0.0 1.5 1 0 0 1 1 1 0 Suppressor of RNA silencing P21-like N-terminal domain NOG1_N PF17835.1 gi|219852174|ref|YP_002466606.1| - 5.2e-35 120.8 0.3 8.6e-35 120.1 0.3 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|219852174|ref|YP_002466606.1| - 1.1e-21 76.4 0.3 2e-21 75.5 0.3 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|219852174|ref|YP_002466606.1| - 1e-19 70.7 0.0 2.4e-19 69.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|219852174|ref|YP_002466606.1| - 1.2e-11 44.4 0.0 1.8e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|219852174|ref|YP_002466606.1| - 0.00012 22.2 0.1 0.01 15.9 0.0 2.4 1 1 1 2 2 2 1 Dynamin family GTP_EFTU PF00009.27 gi|219852174|ref|YP_002466606.1| - 0.00045 19.8 0.1 0.0019 17.8 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|219852174|ref|YP_002466606.1| - 0.0032 17.1 0.1 0.0093 15.6 0.0 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|219852174|ref|YP_002466606.1| - 0.0045 16.9 0.1 0.37 10.7 0.0 2.5 2 1 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|219852174|ref|YP_002466606.1| - 0.023 14.5 0.1 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|219852174|ref|YP_002466606.1| - 0.051 13.0 0.0 0.94 8.9 0.1 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.16 gi|219852174|ref|YP_002466606.1| - 0.053 12.9 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 AIG1 family NACHT PF05729.12 gi|219852174|ref|YP_002466606.1| - 0.071 13.0 0.0 0.33 10.9 0.0 2.1 1 1 0 1 1 1 0 NACHT domain PPV_E1_C PF00519.17 gi|219852174|ref|YP_002466606.1| - 0.12 11.2 0.0 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase FKBP_C PF00254.28 gi|219852175|ref|YP_002466607.1| - 5.5e-11 42.6 0.0 2.5e-10 40.5 0.0 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|219852175|ref|YP_002466607.1| - 4.6e-06 26.6 0.0 9.5e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal LPD30 PF18850.1 gi|219852175|ref|YP_002466607.1| - 0.047 13.4 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Large polyvalent protein associated domain 30 CYTH PF01928.21 gi|219852176|ref|YP_002466608.1| - 1.5e-29 103.2 0.4 1.6e-29 103.1 0.4 1.0 1 0 0 1 1 1 1 CYTH domain CBM_6 PF03422.15 gi|219852176|ref|YP_002466608.1| - 0.035 14.4 0.0 0.047 14.0 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate binding module (family 6) Nucleopor_Nup85 PF07575.13 gi|219852178|ref|YP_002466610.1| - 0.033 12.8 0.7 0.034 12.7 0.7 1.0 1 0 0 1 1 1 0 Nup85 Nucleoporin SHR3_chaperone PF08229.11 gi|219852178|ref|YP_002466610.1| - 1.5 7.8 7.4 2.5 7.0 7.4 1.5 1 1 0 1 1 1 0 ER membrane protein SH3 HTH_20 PF12840.7 gi|219852180|ref|YP_002466612.1| - 1.7e-05 24.8 0.0 6e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|219852180|ref|YP_002466612.1| - 2.4e-05 24.1 0.1 9.4e-05 22.2 0.0 2.1 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|219852180|ref|YP_002466612.1| - 0.0022 17.5 0.0 0.0057 16.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|219852180|ref|YP_002466612.1| - 0.0067 16.4 0.0 0.057 13.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|219852180|ref|YP_002466612.1| - 0.068 12.9 0.2 3.1 7.5 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4423) Putative_PNPOx PF01243.20 gi|219852181|ref|YP_002466613.1| - 3.8e-20 71.9 0.0 4.7e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|219852181|ref|YP_002466613.1| - 0.00052 19.6 0.0 0.00068 19.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF447 PF04289.12 gi|219852181|ref|YP_002466613.1| - 0.019 14.8 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) PD40 PF07676.12 gi|219852182|ref|YP_002466614.1| - 0.00036 20.4 13.1 0.55 10.2 0.2 5.3 4 1 0 4 4 4 4 WD40-like Beta Propeller Repeat PSI_PsaH PF03244.14 gi|219852182|ref|YP_002466614.1| - 0.8 9.2 11.4 7.3 6.1 0.2 3.6 4 0 0 4 4 4 0 Photosystem I reaction centre subunit VI VSG_B PF13206.6 gi|219852183|ref|YP_002466615.1| - 0.098 11.9 0.1 0.12 11.6 0.1 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain DUF3006 PF11213.8 gi|219852184|ref|YP_002466616.1| - 7.5e-17 61.3 3.7 8.3e-17 61.2 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF104 PF01954.16 gi|219852184|ref|YP_002466616.1| - 0.16 12.4 4.1 0.3 11.6 2.4 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF104 ABC_tran PF00005.27 gi|219852185|ref|YP_002466617.1| - 7.9e-33 113.9 0.0 1.1e-32 113.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|219852185|ref|YP_002466617.1| - 1.2e-11 44.7 0.0 2.9e-11 43.5 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|219852185|ref|YP_002466617.1| - 3.5e-05 23.8 0.0 0.015 15.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|219852185|ref|YP_002466617.1| - 0.0012 18.9 0.0 0.0047 17.1 0.0 2.0 2 0 0 2 2 2 1 TOBE domain TOBE_3 PF12857.7 gi|219852185|ref|YP_002466617.1| - 0.002 18.0 0.0 0.0062 16.4 0.0 1.9 1 0 0 1 1 1 1 TOBE-like domain AAA_29 PF13555.6 gi|219852185|ref|YP_002466617.1| - 0.0028 17.3 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852185|ref|YP_002466617.1| - 0.0035 17.7 0.1 0.009 16.4 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|219852185|ref|YP_002466617.1| - 0.0037 16.7 0.0 0.59 9.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219852185|ref|YP_002466617.1| - 0.0046 17.5 0.0 0.0065 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|219852185|ref|YP_002466617.1| - 0.027 14.4 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|219852185|ref|YP_002466617.1| - 0.047 13.4 0.1 0.1 12.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|219852185|ref|YP_002466617.1| - 0.068 13.4 0.2 1.1 9.6 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|219852185|ref|YP_002466617.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|219852185|ref|YP_002466617.1| - 0.12 12.7 0.0 0.33 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|219852185|ref|YP_002466617.1| - 0.17 11.6 0.0 0.72 9.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.22 gi|219852186|ref|YP_002466618.1| - 1.6e-19 70.4 14.9 1.6e-19 70.4 14.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmO PF01980.16 gi|219852187|ref|YP_002466619.1| - 1.2e-32 112.6 0.0 1.8e-32 112.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O SBP_bac_11 PF13531.6 gi|219852188|ref|YP_002466620.1| - 8.4e-43 146.7 0.1 9.8e-43 146.5 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|219852188|ref|YP_002466620.1| - 3.9e-08 33.6 2.6 1.4e-06 28.5 2.6 2.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|219852188|ref|YP_002466620.1| - 0.00017 21.1 0.1 0.00029 20.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|219852188|ref|YP_002466620.1| - 0.0074 16.1 1.3 0.062 13.1 0.1 2.2 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|219852188|ref|YP_002466620.1| - 0.0093 15.4 0.1 0.014 14.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TOBE PF03459.17 gi|219852189|ref|YP_002466621.1| - 8.5e-19 67.6 0.3 9.3e-19 67.5 0.3 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|219852189|ref|YP_002466621.1| - 0.0074 16.4 0.0 0.0085 16.2 0.0 1.1 1 0 0 1 1 1 1 TOBE domain DUF4609 PF15382.6 gi|219852189|ref|YP_002466621.1| - 0.056 13.3 0.3 0.075 12.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4609) Methyltransf_25 PF13649.6 gi|219852191|ref|YP_002466623.1| - 1.6e-09 38.4 0.0 2.7e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852191|ref|YP_002466623.1| - 2.8e-09 37.0 0.0 3.9e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852191|ref|YP_002466623.1| - 3.3e-06 27.8 0.0 6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852191|ref|YP_002466623.1| - 7.1e-06 26.6 0.0 1.2e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|219852191|ref|YP_002466623.1| - 0.00043 19.7 0.0 0.0006 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|219852191|ref|YP_002466623.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|219852191|ref|YP_002466623.1| - 0.0027 17.5 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|219852191|ref|YP_002466623.1| - 0.0028 17.4 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|219852191|ref|YP_002466623.1| - 0.021 14.3 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain GidB PF02527.15 gi|219852191|ref|YP_002466623.1| - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|219852191|ref|YP_002466623.1| - 0.025 13.7 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase SAM_MT PF04445.13 gi|219852191|ref|YP_002466623.1| - 0.025 14.0 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Cons_hypoth95 PF03602.15 gi|219852191|ref|YP_002466623.1| - 0.079 12.6 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Conserved hypothetical protein 95 MetW PF07021.12 gi|219852191|ref|YP_002466623.1| - 0.2 11.2 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FmdE PF02663.14 gi|219852192|ref|YP_002466624.1| - 2.7e-32 111.6 0.0 3.5e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|219852192|ref|YP_002466624.1| - 6e-09 35.7 0.2 1.2e-08 34.8 0.2 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|219852192|ref|YP_002466624.1| - 0.003 17.7 0.5 0.006 16.8 0.5 1.5 1 0 0 1 1 1 1 LIM domain DZR PF12773.7 gi|219852192|ref|YP_002466624.1| - 0.048 13.7 0.2 0.048 13.7 0.2 1.6 2 0 0 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|219852192|ref|YP_002466624.1| - 0.074 13.0 1.3 0.19 11.7 1.3 1.7 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|219852192|ref|YP_002466624.1| - 0.11 12.1 4.3 1.1 8.8 0.3 2.6 1 1 2 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|219852192|ref|YP_002466624.1| - 0.11 12.4 1.2 7.4 6.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|219852192|ref|YP_002466624.1| - 0.31 11.2 2.3 0.58 10.4 2.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|219852192|ref|YP_002466624.1| - 1 8.9 6.1 21 4.7 4.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219852192|ref|YP_002466624.1| - 2.4 8.0 5.7 22 4.9 2.6 2.8 2 1 0 2 2 2 0 zinc-ribbon domain Methyltransf_25 PF13649.6 gi|219852193|ref|YP_002466625.1| - 1.1e-10 42.0 0.0 2.2e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852193|ref|YP_002466625.1| - 5.8e-09 36.0 0.0 8.8e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852193|ref|YP_002466625.1| - 5.8e-08 33.3 0.0 1.1e-07 32.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852193|ref|YP_002466625.1| - 5.2e-07 30.3 0.0 9.1e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|219852193|ref|YP_002466625.1| - 3.6e-06 26.9 0.0 4.9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein SAM_MT PF04445.13 gi|219852193|ref|YP_002466625.1| - 4.9e-05 22.9 0.0 6.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase GidB PF02527.15 gi|219852193|ref|YP_002466625.1| - 8.5e-05 22.0 0.0 0.00018 20.9 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 gi|219852193|ref|YP_002466625.1| - 0.00013 21.8 0.0 0.00019 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|219852193|ref|YP_002466625.1| - 0.00032 19.9 0.0 0.00045 19.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|219852193|ref|YP_002466625.1| - 0.0028 17.0 0.0 0.0048 16.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|219852193|ref|YP_002466625.1| - 0.0099 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_16 PF10294.9 gi|219852193|ref|YP_002466625.1| - 0.015 15.0 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase MTS PF05175.14 gi|219852193|ref|YP_002466625.1| - 0.02 14.4 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|219852193|ref|YP_002466625.1| - 0.02 14.6 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Pyr_redox PF00070.27 gi|219852193|ref|YP_002466625.1| - 0.062 13.9 0.0 0.59 10.7 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Cons_hypoth95 PF03602.15 gi|219852193|ref|YP_002466625.1| - 0.071 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|219852193|ref|YP_002466625.1| - 0.2 11.0 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family YdjM PF04307.14 gi|219852196|ref|YP_002466628.1| - 5.5e-14 51.9 0.1 8.8e-14 51.2 0.1 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Virul_fac_BrkB PF03631.15 gi|219852196|ref|YP_002466628.1| - 0.21 11.2 1.4 9.9 5.7 1.1 2.1 2 0 0 2 2 2 0 Virulence factor BrkB DUF4079 PF13301.6 gi|219852196|ref|YP_002466628.1| - 1.6 8.9 4.4 8.4 6.5 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4079) FecCD PF01032.18 gi|219852197|ref|YP_002466629.1| - 2e-89 299.7 28.3 2.4e-89 299.4 28.3 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|219852197|ref|YP_002466629.1| - 1e-06 28.4 14.6 1.3e-06 28.2 14.0 1.5 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|219852198|ref|YP_002466630.1| - 1.2e-28 100.3 0.0 1.7e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852198|ref|YP_002466630.1| - 2.2e-15 57.3 0.3 2.1e-08 34.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852198|ref|YP_002466630.1| - 7e-06 25.6 0.0 0.023 14.2 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|219852198|ref|YP_002466630.1| - 0.00024 21.7 0.0 0.00038 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|219852198|ref|YP_002466630.1| - 0.001 19.0 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|219852198|ref|YP_002466630.1| - 0.0015 18.9 0.0 0.0031 17.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|219852198|ref|YP_002466630.1| - 0.0036 17.0 0.0 0.0074 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|219852198|ref|YP_002466630.1| - 0.0041 17.4 0.0 0.033 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|219852198|ref|YP_002466630.1| - 0.012 15.4 0.1 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|219852198|ref|YP_002466630.1| - 0.018 14.7 0.0 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|219852198|ref|YP_002466630.1| - 0.043 13.7 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|219852198|ref|YP_002466630.1| - 0.049 12.4 0.0 3.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|219852198|ref|YP_002466630.1| - 0.053 13.9 0.0 0.44 11.0 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|219852198|ref|YP_002466630.1| - 0.062 13.0 0.0 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|219852198|ref|YP_002466630.1| - 0.07 12.7 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|219852198|ref|YP_002466630.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|219852198|ref|YP_002466630.1| - 0.098 12.6 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|219852198|ref|YP_002466630.1| - 0.15 12.0 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|219852198|ref|YP_002466630.1| - 0.17 11.9 0.0 0.91 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_11 PF08241.12 gi|219852199|ref|YP_002466631.1| - 2.6e-20 72.9 0.0 3.8e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852199|ref|YP_002466631.1| - 1.4e-17 64.1 0.0 2.6e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852199|ref|YP_002466631.1| - 3.2e-11 43.4 0.0 3.8e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852199|ref|YP_002466631.1| - 5.1e-09 36.1 0.0 6.6e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852199|ref|YP_002466631.1| - 3.2e-08 34.2 0.0 6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852199|ref|YP_002466631.1| - 3.1e-07 30.0 0.0 4.8e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|219852199|ref|YP_002466631.1| - 0.00014 21.4 0.0 0.00025 20.5 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|219852199|ref|YP_002466631.1| - 0.00053 19.6 0.0 0.00082 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|219852199|ref|YP_002466631.1| - 0.00057 19.7 0.0 0.00079 19.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.20 gi|219852199|ref|YP_002466631.1| - 0.011 15.0 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|219852199|ref|YP_002466631.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|219852199|ref|YP_002466631.1| - 0.041 13.4 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_8 PF05148.15 gi|219852199|ref|YP_002466631.1| - 0.076 12.9 0.0 0.27 11.1 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|219852199|ref|YP_002466631.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Peripla_BP_2 PF01497.18 gi|219852200|ref|YP_002466632.1| - 2.6e-06 27.2 0.0 3.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.6 gi|219852200|ref|YP_002466632.1| - 0.00023 21.4 0.1 0.00048 20.4 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219852200|ref|YP_002466632.1| - 0.026 14.7 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fanconi_A PF03511.14 gi|219852200|ref|YP_002466632.1| - 0.034 14.1 0.0 0.95 9.4 0.0 2.5 2 0 0 2 2 2 0 Fanconi anaemia group A protein YvfG PF09628.10 gi|219852200|ref|YP_002466632.1| - 0.22 11.9 0.0 0.42 11.0 0.0 1.4 1 0 0 1 1 1 0 YvfG protein Peripla_BP_2 PF01497.18 gi|219852201|ref|YP_002466633.1| - 1.1e-20 74.2 0.0 1.5e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF3098 PF11297.8 gi|219852201|ref|YP_002466633.1| - 0.073 12.7 0.3 0.2 11.3 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3098) YjbE PF11106.8 gi|219852201|ref|YP_002466633.1| - 0.08 13.2 2.2 0.15 12.3 2.2 1.5 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE Cas_Cas2CT1978 PF09707.10 gi|219852204|ref|YP_002466636.1| - 1.7e-36 124.2 0.1 1.9e-36 124.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) MTES_1575 PF18741.1 gi|219852204|ref|YP_002466636.1| - 0.071 13.3 0.0 0.083 13.1 0.0 1.3 1 1 0 1 1 1 0 REase_MTES_1575 Cas_Cas1 PF01867.16 gi|219852205|ref|YP_002466637.1| - 3.9e-14 52.5 0.0 1.5e-08 34.1 0.0 2.0 1 1 1 2 2 2 2 CRISPR associated protein Cas1 CRISPR_assoc PF08798.11 gi|219852206|ref|YP_002466638.1| - 3.5e-51 174.5 0.0 3.9e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas_Cas5d PF09704.10 gi|219852207|ref|YP_002466639.1| - 2.7e-46 158.2 0.6 3.1e-46 158.0 0.6 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_CT1975 PF09344.10 gi|219852208|ref|YP_002466640.1| - 4.1e-95 319.3 0.0 5.1e-95 319.0 0.0 1.0 1 0 0 1 1 1 1 CT1975-like protein Cas_Cas7 PF05107.12 gi|219852208|ref|YP_002466640.1| - 0.022 14.3 0.0 0.046 13.3 0.0 1.6 1 1 0 1 1 1 0 CRISPR-associated protein Cas7 2-oxoacid_dh PF00198.23 gi|219852208|ref|YP_002466640.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CRISPR_Cse2 PF09485.10 gi|219852209|ref|YP_002466641.1| - 1.3e-16 61.4 0.6 1.7e-16 61.1 0.6 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) PNKP_ligase PF16542.5 gi|219852209|ref|YP_002466641.1| - 0.032 13.7 0.4 6.1 6.2 0.0 2.1 2 0 0 2 2 2 0 PNKP adenylyltransferase domain, ligase domain CRISPR_Cse1 PF09481.10 gi|219852210|ref|YP_002466642.1| - 1e-105 354.5 0.0 1.3e-105 354.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse1 (CRISPR_cse1) HD_6 PF18019.1 gi|219852211|ref|YP_002466643.1| - 4.3e-45 154.3 0.2 6.8e-45 153.6 0.2 1.3 1 0 0 1 1 1 1 HD domain Helicase_C PF00271.31 gi|219852211|ref|YP_002466643.1| - 0.00062 20.1 0.0 0.0017 18.7 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|219852211|ref|YP_002466643.1| - 0.018 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|219852211|ref|YP_002466643.1| - 0.14 11.9 0.0 3.2 7.5 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase Mrr_cat PF04471.12 gi|219852212|ref|YP_002466644.1| - 2e-33 114.8 0.1 2.9e-33 114.3 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.6 gi|219852212|ref|YP_002466644.1| - 1.9e-24 85.6 0.1 3.4e-24 84.8 0.1 1.4 1 0 0 1 1 1 1 Mrr N-terminal domain Mrr_cat_2 PF13156.6 gi|219852212|ref|YP_002466644.1| - 8.7e-11 41.8 0.1 1.5e-10 41.0 0.1 1.3 1 0 0 1 1 1 1 Restriction endonuclease Cas6b_N PF17955.1 gi|219852216|ref|YP_002466648.1| - 5.8e-07 29.6 0.0 6.4e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Cas6b N-terminal domain GrpE PF01025.19 gi|219852217|ref|YP_002466649.1| - 1.1e-40 139.1 0.5 1.3e-40 138.8 0.5 1.0 1 0 0 1 1 1 1 GrpE DUF1451 PF07295.11 gi|219852217|ref|YP_002466649.1| - 0.018 15.1 1.6 0.029 14.4 1.5 1.4 1 1 0 1 1 1 0 Zinc-ribbon containing domain DUF1664 PF07889.12 gi|219852217|ref|YP_002466649.1| - 0.028 14.5 1.2 0.029 14.4 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Kri1 PF05178.12 gi|219852217|ref|YP_002466649.1| - 0.047 14.3 1.8 1.2 9.7 0.8 2.3 2 0 0 2 2 2 0 KRI1-like family KLRAQ PF10205.9 gi|219852217|ref|YP_002466649.1| - 0.097 12.9 0.6 0.097 12.9 0.6 1.9 2 1 0 2 2 2 0 Predicted coiled-coil domain-containing protein AAA_25 PF13481.6 gi|219852217|ref|YP_002466649.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain FlxA PF14282.6 gi|219852217|ref|YP_002466649.1| - 0.6 10.1 5.1 1.1 9.3 0.9 2.2 2 0 0 2 2 2 0 FlxA-like protein HSP70 PF00012.20 gi|219852218|ref|YP_002466650.1| - 1.4e-215 717.0 9.2 4.4e-213 708.8 9.2 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|219852218|ref|YP_002466650.1| - 2.1e-20 72.8 2.1 5.7e-20 71.4 2.1 1.7 1 0 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|219852218|ref|YP_002466650.1| - 0.00051 19.8 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain CD4-extracel PF09191.10 gi|219852218|ref|YP_002466650.1| - 0.0084 16.5 0.0 0.018 15.5 0.0 1.5 1 0 0 1 1 1 1 CD4, extracellular StbA PF06406.11 gi|219852218|ref|YP_002466650.1| - 0.044 13.0 0.3 0.42 9.8 0.1 2.1 1 1 1 2 2 2 0 StbA protein DUF4363 PF14276.6 gi|219852218|ref|YP_002466650.1| - 0.064 13.4 1.4 0.13 12.4 1.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) DUF3347 PF11827.8 gi|219852218|ref|YP_002466650.1| - 0.85 9.8 6.7 1.8 8.7 6.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) PTS_IIB PF02302.17 gi|219852218|ref|YP_002466650.1| - 6.6 7.5 7.2 13 6.5 2.9 3.0 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit DnaJ_C PF01556.18 gi|219852219|ref|YP_002466651.1| - 4.5e-36 124.2 0.0 6.1e-36 123.7 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|219852219|ref|YP_002466651.1| - 2.1e-26 91.8 3.1 3.7e-26 91.0 3.1 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|219852219|ref|YP_002466651.1| - 1.2e-12 48.0 15.0 2e-12 47.3 15.0 1.4 1 0 0 1 1 1 1 DnaJ central domain RRM_3 PF08777.11 gi|219852219|ref|YP_002466651.1| - 0.011 15.7 0.3 0.021 14.8 0.3 1.4 1 0 0 1 1 1 0 RNA binding motif HypA PF01155.19 gi|219852219|ref|YP_002466651.1| - 0.029 14.4 5.9 0.16 12.0 0.2 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|219852219|ref|YP_002466651.1| - 0.031 14.2 4.5 0.031 14.2 4.5 3.1 1 1 3 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein Lar_restr_allev PF14354.6 gi|219852219|ref|YP_002466651.1| - 2.3 8.7 12.7 3.7 8.0 0.9 3.5 2 1 2 4 4 4 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|219852219|ref|YP_002466651.1| - 9.9 6.2 6.7 10 6.2 0.4 2.4 1 1 1 2 2 2 0 zinc-ribbons HxlR PF01638.17 gi|219852220|ref|YP_002466652.1| - 2.7e-33 113.6 0.1 3.3e-33 113.4 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|219852220|ref|YP_002466652.1| - 0.024 14.6 0.1 0.046 13.7 0.1 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.22 gi|219852220|ref|YP_002466652.1| - 0.038 13.9 0.1 0.062 13.2 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|219852220|ref|YP_002466652.1| - 0.078 12.9 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Cupin_2 PF07883.11 gi|219852221|ref|YP_002466653.1| - 3.8e-11 42.5 0.8 6e-11 41.9 0.8 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|219852221|ref|YP_002466653.1| - 2.2e-07 30.9 0.6 3.7e-07 30.1 0.5 1.4 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|219852221|ref|YP_002466653.1| - 0.00029 20.5 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|219852221|ref|YP_002466653.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.4 1 1 0 1 1 1 0 ChrR Cupin-like domain PCB_OB PF17092.5 gi|219852221|ref|YP_002466653.1| - 0.15 12.8 0.0 0.29 11.9 0.0 1.4 1 1 0 1 1 1 0 Penicillin-binding protein OB-like domain FMN_red PF03358.15 gi|219852222|ref|YP_002466654.1| - 9.7e-25 87.1 0.0 1.3e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852222|ref|YP_002466654.1| - 6.3e-15 55.4 0.0 7.9e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold WAK_assoc PF14380.6 gi|219852222|ref|YP_002466654.1| - 0.081 13.7 0.4 0.13 13.0 0.4 1.4 1 0 0 1 1 1 0 Wall-associated receptor kinase C-terminal FMN_red PF03358.15 gi|219852223|ref|YP_002466655.1| - 3.3e-31 108.1 0.0 4.1e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852223|ref|YP_002466655.1| - 4.9e-07 29.6 0.0 6.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Aldo_ket_red PF00248.21 gi|219852224|ref|YP_002466656.1| - 2.3e-41 141.9 0.0 4.6e-40 137.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|219852224|ref|YP_002466656.1| - 3.9e-10 40.1 7.8 5e-10 39.8 6.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852224|ref|YP_002466656.1| - 1.6e-09 37.8 5.5 4.2e-09 36.4 5.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852224|ref|YP_002466656.1| - 5.7e-05 23.1 9.9 0.00088 19.3 11.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852224|ref|YP_002466656.1| - 0.00012 22.3 12.3 0.0013 19.1 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852224|ref|YP_002466656.1| - 0.00023 21.7 10.5 0.002 18.7 10.6 2.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852224|ref|YP_002466656.1| - 0.00028 21.3 8.9 0.0019 18.6 9.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|219852224|ref|YP_002466656.1| - 0.00051 19.8 7.3 0.063 13.1 0.8 2.4 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|219852224|ref|YP_002466656.1| - 0.0014 18.8 7.4 0.033 14.4 1.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852224|ref|YP_002466656.1| - 0.0085 15.9 2.7 0.0085 15.9 2.7 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|219852224|ref|YP_002466656.1| - 0.15 12.6 0.7 0.15 12.6 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|219852224|ref|YP_002466656.1| - 0.22 11.7 13.8 0.11 12.7 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852224|ref|YP_002466656.1| - 0.22 11.7 17.0 0.17 12.0 4.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852224|ref|YP_002466656.1| - 0.41 11.6 13.7 2.2 9.3 4.5 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|219852224|ref|YP_002466656.1| - 6.8 6.9 15.6 2.3e+02 2.0 13.4 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Flavodoxin_4 PF12682.7 gi|219852225|ref|YP_002466657.1| - 2.3e-20 72.9 0.0 3e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|219852225|ref|YP_002466657.1| - 0.015 14.9 0.0 4.1 7.1 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|219852225|ref|YP_002466657.1| - 0.069 12.8 0.1 0.11 12.2 0.1 1.3 1 1 0 1 1 1 0 Flavodoxin-like fold FMN_red PF03358.15 gi|219852225|ref|YP_002466657.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Aldo_ket_red PF00248.21 gi|219852226|ref|YP_002466658.1| - 1.2e-40 139.5 0.0 9.7e-39 133.3 0.0 2.1 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|219852226|ref|YP_002466658.1| - 3.2e-12 46.8 8.2 7.2e-12 45.7 8.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852226|ref|YP_002466658.1| - 1.4e-08 34.8 7.6 2.6e-08 33.9 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852226|ref|YP_002466658.1| - 9.7e-05 22.7 7.4 0.0002 21.7 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852226|ref|YP_002466658.1| - 0.0001 22.0 10.2 0.00034 20.3 2.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219852226|ref|YP_002466658.1| - 0.00012 22.9 1.4 0.087 13.7 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219852226|ref|YP_002466658.1| - 0.00012 22.2 3.3 0.0014 18.8 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852226|ref|YP_002466658.1| - 0.00022 21.2 6.3 0.002 18.2 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|219852226|ref|YP_002466658.1| - 0.0011 18.7 0.2 0.0011 18.7 0.2 1.8 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|219852226|ref|YP_002466658.1| - 0.0013 18.8 6.7 0.29 11.3 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852226|ref|YP_002466658.1| - 0.0057 17.6 4.9 0.04 14.8 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|219852226|ref|YP_002466658.1| - 0.01 16.4 10.8 0.029 15.0 10.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852226|ref|YP_002466658.1| - 0.028 14.9 3.0 0.028 14.9 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain NPR1_like_C PF12313.8 gi|219852226|ref|YP_002466658.1| - 0.058 12.9 0.1 6.3 6.3 0.0 2.1 2 0 0 2 2 2 0 NPR1/NIM1 like defence protein C terminal Fer4_2 PF12797.7 gi|219852226|ref|YP_002466658.1| - 0.26 11.4 13.4 0.085 13.0 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Med27 PF11571.8 gi|219852226|ref|YP_002466658.1| - 0.36 11.2 2.3 1.6 9.2 0.1 2.6 3 0 0 3 3 2 0 Mediator complex subunit 27 Fer4_6 PF12837.7 gi|219852226|ref|YP_002466658.1| - 0.97 9.6 14.9 0.056 13.5 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF98 PF01947.16 gi|219852227|ref|YP_002466659.1| - 9.2e-29 100.3 0.0 1.5e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase GHMP_kinases_N PF00288.26 gi|219852227|ref|YP_002466659.1| - 2e-07 31.1 2.1 2e-07 31.1 2.1 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|219852227|ref|YP_002466659.1| - 8.7e-05 22.8 0.0 0.00036 20.8 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal UTRA PF07702.13 gi|219852227|ref|YP_002466659.1| - 0.0007 19.5 0.2 0.0017 18.2 0.2 1.7 1 0 0 1 1 1 1 UTRA domain Chor_lyase PF04345.13 gi|219852227|ref|YP_002466659.1| - 0.089 12.4 0.0 0.22 11.1 0.0 1.6 1 1 0 1 1 1 0 Chorismate lyase Radical_SAM PF04055.21 gi|219852229|ref|YP_002466661.1| - 2.8e-23 83.1 0.1 1e-22 81.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|219852229|ref|YP_002466661.1| - 4.1e-13 49.4 0.0 7.8e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Sulf_transp PF04143.14 gi|219852231|ref|YP_002466663.1| - 1.2e-14 54.6 13.9 1.2e-14 54.6 13.9 1.4 1 1 0 1 1 1 1 Sulphur transport Sulf_transp PF04143.14 gi|219852232|ref|YP_002466664.1| - 1.4e-25 90.5 15.8 1.6e-25 90.4 15.8 1.0 1 0 0 1 1 1 1 Sulphur transport Peptidase_M24 PF00557.24 gi|219852233|ref|YP_002466665.1| - 1.2e-34 119.9 0.0 1.8e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|219852233|ref|YP_002466665.1| - 1.9e-10 41.5 0.0 3e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain NGP1NT PF08153.12 gi|219852233|ref|YP_002466665.1| - 0.087 13.0 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 NGP1NT (NUC091) domain Na_H_Exchanger PF00999.21 gi|219852234|ref|YP_002466666.1| - 3.7e-61 207.0 56.8 5.1e-61 206.6 56.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|219852234|ref|YP_002466666.1| - 3.5e-21 75.6 0.1 6.7e-21 74.7 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|219852234|ref|YP_002466666.1| - 5.3e-14 51.8 0.1 1.7e-13 50.2 0.3 1.9 2 0 0 2 2 2 1 TrkA-C domain Cupin_2 PF07883.11 gi|219852236|ref|YP_002466668.1| - 2.7e-12 46.2 0.0 3.8e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|219852236|ref|YP_002466668.1| - 5e-07 29.7 0.0 6.4e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Asp_Arg_Hydrox PF05118.15 gi|219852236|ref|YP_002466668.1| - 0.0001 22.2 0.0 0.00015 21.7 0.0 1.3 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_3 PF05899.12 gi|219852236|ref|YP_002466668.1| - 0.00034 20.3 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|219852236|ref|YP_002466668.1| - 0.005 16.6 0.0 0.0056 16.4 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Lyx_isomer PF07385.12 gi|219852236|ref|YP_002466668.1| - 0.019 14.2 0.0 0.02 14.1 0.0 1.1 1 0 0 1 1 1 0 D-lyxose isomerase Cupin_6 PF12852.7 gi|219852236|ref|YP_002466668.1| - 0.021 14.6 0.0 0.026 14.2 0.0 1.1 1 0 0 1 1 1 0 Cupin AraC_N PF06719.13 gi|219852236|ref|YP_002466668.1| - 0.039 13.6 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus AraC_binding_2 PF14525.6 gi|219852236|ref|YP_002466668.1| - 0.047 13.4 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Ppnp PF06865.11 gi|219852236|ref|YP_002466668.1| - 0.053 14.0 0.0 0.072 13.5 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Cupin_1 PF00190.22 gi|219852236|ref|YP_002466668.1| - 0.056 13.1 0.0 0.089 12.4 0.0 1.3 1 1 0 1 1 1 0 Cupin Prismane PF03063.20 gi|219852237|ref|YP_002466669.1| - 2.4e-165 551.1 0.1 2.7e-165 550.9 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HxlR PF01638.17 gi|219852238|ref|YP_002466670.1| - 4e-21 74.7 0.2 4.9e-21 74.4 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|219852238|ref|YP_002466670.1| - 0.0036 15.8 0.1 0.0041 15.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_24 PF13412.6 gi|219852238|ref|YP_002466670.1| - 0.0066 16.0 0.1 0.018 14.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|219852238|ref|YP_002466670.1| - 0.0094 15.8 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|219852238|ref|YP_002466670.1| - 0.012 15.7 0.1 0.02 14.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2513 PF10711.9 gi|219852238|ref|YP_002466670.1| - 0.016 15.5 0.2 0.021 15.1 0.2 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_45 PF14947.6 gi|219852238|ref|YP_002466670.1| - 0.019 14.9 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix PadR PF03551.14 gi|219852238|ref|YP_002466670.1| - 0.024 14.6 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family zf-C3HC4_5 PF17121.5 gi|219852238|ref|YP_002466670.1| - 0.024 14.5 0.1 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) HTH_34 PF13601.6 gi|219852238|ref|YP_002466670.1| - 0.034 14.3 0.0 0.047 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|219852238|ref|YP_002466670.1| - 0.051 14.1 0.1 0.08 13.4 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|219852238|ref|YP_002466670.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|219852238|ref|YP_002466670.1| - 0.11 12.5 0.2 0.27 11.2 0.2 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repr_C PF02742.15 gi|219852239|ref|YP_002466671.1| - 3.6e-16 59.0 0.1 6.7e-16 58.1 0.1 1.5 1 1 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|219852239|ref|YP_002466671.1| - 8.8e-10 38.6 0.2 1.5e-09 37.9 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|219852239|ref|YP_002466671.1| - 0.0002 21.2 0.0 0.00093 19.0 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|219852239|ref|YP_002466671.1| - 0.00083 19.2 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 gi|219852239|ref|YP_002466671.1| - 0.019 15.0 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_6 PF01418.17 gi|219852239|ref|YP_002466671.1| - 0.06 13.3 0.0 4.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Rrf2 PF02082.20 gi|219852239|ref|YP_002466671.1| - 0.063 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|219852239|ref|YP_002466671.1| - 0.072 13.1 0.0 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|219852239|ref|YP_002466671.1| - 0.087 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|219852239|ref|YP_002466671.1| - 0.13 12.7 0.0 0.22 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain CbiQ PF02361.16 gi|219852240|ref|YP_002466672.1| - 1.1e-26 93.9 17.5 1.4e-26 93.5 17.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiM PF01891.16 gi|219852241|ref|YP_002466673.1| - 2.1e-37 129.0 20.2 2.4e-37 128.8 20.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region NnrU PF07298.11 gi|219852242|ref|YP_002466674.1| - 0.011 15.3 0.1 0.014 14.9 0.1 1.2 1 0 0 1 1 1 0 NnrU protein DUF2207 PF09972.9 gi|219852242|ref|YP_002466674.1| - 0.12 11.1 0.2 0.13 11.0 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PAS_4 PF08448.10 gi|219852243|ref|YP_002466675.1| - 1.5e-42 144.3 0.6 1.3e-11 44.7 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|219852243|ref|YP_002466675.1| - 4.9e-36 123.1 0.0 1.8e-13 50.6 0.0 5.0 5 0 0 5 5 5 3 PAS domain PAS_3 PF08447.12 gi|219852243|ref|YP_002466675.1| - 2.3e-28 98.3 0.0 6.2e-10 39.2 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|219852243|ref|YP_002466675.1| - 3.1e-28 98.0 0.3 5.9e-08 32.7 0.0 4.9 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|219852243|ref|YP_002466675.1| - 2.6e-19 68.8 0.1 2e-05 24.5 0.0 4.7 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|219852243|ref|YP_002466675.1| - 5.1e-18 65.3 0.0 1.3e-17 64.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219852243|ref|YP_002466675.1| - 5.6e-12 46.2 0.3 8.1e-11 42.4 0.1 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MnmE_helical PF12631.7 gi|219852243|ref|YP_002466675.1| - 0.00026 21.2 0.1 0.035 14.3 0.0 2.6 2 1 0 2 2 2 1 MnmE helical domain SPOB_a PF14689.6 gi|219852243|ref|YP_002466675.1| - 0.00036 20.2 0.3 0.00083 19.0 0.3 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|219852243|ref|YP_002466675.1| - 0.0041 17.0 0.0 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 GHKL domain LptE PF04390.12 gi|219852243|ref|YP_002466675.1| - 0.019 15.6 2.0 3 8.6 0.0 3.2 2 1 1 3 3 3 0 Lipopolysaccharide-assembly PAS_2 PF08446.11 gi|219852243|ref|YP_002466675.1| - 0.15 12.7 0.0 5.4 7.7 0.0 3.2 4 0 0 4 4 3 0 PAS fold Nitroreductase PF00881.24 gi|219852244|ref|YP_002466676.1| - 4.2e-27 95.3 0.0 5.2e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|219852244|ref|YP_002466676.1| - 5.9e-11 41.7 19.2 4.2e-06 26.3 3.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852244|ref|YP_002466676.1| - 9.7e-11 42.1 6.5 6.3e-05 23.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852244|ref|YP_002466676.1| - 1.3e-10 40.8 13.5 1.3e-05 25.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852244|ref|YP_002466676.1| - 2.3e-08 34.1 10.9 4.3e-08 33.2 10.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852244|ref|YP_002466676.1| - 3.3e-08 33.5 11.1 6.2e-08 32.6 11.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852244|ref|YP_002466676.1| - 7.7e-07 29.9 11.2 0.0031 18.4 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219852244|ref|YP_002466676.1| - 4.6e-06 26.7 14.0 0.00065 20.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852244|ref|YP_002466676.1| - 2.1e-05 24.3 16.8 0.0021 18.1 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain TM1586_NiRdase PF14512.6 gi|219852244|ref|YP_002466676.1| - 2.9e-05 23.8 0.1 0.2 11.2 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase Fer4_15 PF13459.6 gi|219852244|ref|YP_002466676.1| - 0.00022 21.9 7.0 0.0022 18.7 0.5 2.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|219852244|ref|YP_002466676.1| - 0.00033 20.7 13.7 0.00095 19.3 13.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219852244|ref|YP_002466676.1| - 0.00036 21.3 18.2 0.03 15.2 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219852244|ref|YP_002466676.1| - 0.00097 19.6 14.8 0.16 12.5 14.8 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219852244|ref|YP_002466676.1| - 0.013 16.1 15.1 0.54 10.8 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|219852244|ref|YP_002466676.1| - 0.015 15.8 16.8 0.22 12.0 4.1 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219852244|ref|YP_002466676.1| - 0.024 14.8 12.6 0.31 11.3 1.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|219852244|ref|YP_002466676.1| - 0.51 10.5 10.9 1.5 9.0 3.5 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 gi|219852244|ref|YP_002466676.1| - 0.92 9.6 10.4 54 4.0 0.0 3.1 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_22 PF17179.4 gi|219852244|ref|YP_002466676.1| - 6.5 7.7 16.9 5.1 8.0 4.4 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Peptidase_C39_2 PF13529.6 gi|219852245|ref|YP_002466677.1| - 1.4e-19 71.1 0.5 1.2e-18 68.0 0.0 2.8 3 0 0 3 3 3 1 Peptidase_C39 like family Peptidase_C70 PF12385.8 gi|219852245|ref|YP_002466677.1| - 0.00049 20.1 0.0 0.0044 17.0 0.0 2.4 2 1 0 2 2 2 1 Papain-like cysteine protease AvrRpt2 Inhibitor_I69 PF13734.6 gi|219852245|ref|YP_002466677.1| - 0.0073 16.7 2.7 0.012 16.0 1.0 2.1 2 0 0 2 2 2 1 Spi protease inhibitor Stevor PF17410.2 gi|219852246|ref|YP_002466678.1| - 0.32 10.5 0.8 0.58 9.7 0.8 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame PMT_4TMC PF16192.5 gi|219852246|ref|YP_002466678.1| - 0.58 9.7 4.6 0.14 11.7 0.2 2.2 2 1 1 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase TMEM154 PF15102.6 gi|219852246|ref|YP_002466678.1| - 3.4 7.6 4.6 7 6.5 0.9 2.3 2 0 0 2 2 2 0 TMEM154 protein family Saf_2TM PF18303.1 gi|219852247|ref|YP_002466679.1| - 0.42 10.2 4.6 0.12 11.9 1.1 1.9 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain LapA_dom PF06305.11 gi|219852247|ref|YP_002466679.1| - 0.62 9.9 0.1 0.62 9.9 0.1 3.3 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain KTSC PF13619.6 gi|219852251|ref|YP_002466683.1| - 5.5e-23 80.6 0.3 6.9e-23 80.2 0.3 1.1 1 0 0 1 1 1 1 KTSC domain MarR_2 PF12802.7 gi|219852252|ref|YP_002466684.1| - 0.0089 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|219852252|ref|YP_002466684.1| - 0.024 14.4 0.1 0.032 14.0 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Aldo_ket_red PF00248.21 gi|219852256|ref|YP_002466688.1| - 1.8e-39 135.7 0.0 4.3e-38 131.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_9 PF13187.6 gi|219852256|ref|YP_002466688.1| - 3.3e-09 36.8 11.4 5.9e-09 36.0 11.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219852256|ref|YP_002466688.1| - 6.9e-09 36.1 9.9 1.5e-08 35.0 9.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852256|ref|YP_002466688.1| - 0.00017 22.0 11.9 0.00041 20.8 11.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852256|ref|YP_002466688.1| - 0.00072 19.3 11.4 0.0031 17.3 4.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219852256|ref|YP_002466688.1| - 0.0012 19.0 5.5 0.035 14.3 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852256|ref|YP_002466688.1| - 0.036 14.2 7.5 1.7 8.8 1.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219852256|ref|YP_002466688.1| - 0.056 14.4 4.7 0.056 14.4 4.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219852256|ref|YP_002466688.1| - 0.32 11.2 19.0 0.45 10.7 6.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|219852256|ref|YP_002466688.1| - 1.2 8.9 9.2 0.79 9.5 2.3 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_7 PF12838.7 gi|219852256|ref|YP_002466688.1| - 1.7 9.3 18.3 15 6.3 18.3 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852256|ref|YP_002466688.1| - 1.8 8.8 13.3 0.34 11.1 2.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219852256|ref|YP_002466688.1| - 5.6 7.7 20.6 2.5 8.8 8.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain MatE PF01554.18 gi|219852257|ref|YP_002466689.1| - 4.8e-61 205.1 44.6 6e-35 120.3 15.7 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|219852257|ref|YP_002466689.1| - 5.3e-09 36.3 14.6 5.3e-09 36.3 14.6 5.5 3 1 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain MarR PF01047.22 gi|219852258|ref|YP_002466690.1| - 4e-16 58.7 0.1 8.6e-16 57.6 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|219852258|ref|YP_002466690.1| - 3.5e-12 46.0 0.1 7.2e-12 45.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|219852258|ref|YP_002466690.1| - 1.9e-06 28.3 0.0 3.3e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|219852258|ref|YP_002466690.1| - 9.1e-06 25.1 0.0 2.8e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|219852258|ref|YP_002466690.1| - 7.8e-05 22.8 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|219852258|ref|YP_002466690.1| - 0.00075 19.4 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|219852258|ref|YP_002466690.1| - 0.0025 17.8 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|219852258|ref|YP_002466690.1| - 0.0068 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|219852258|ref|YP_002466690.1| - 0.01 15.8 0.0 0.024 14.6 0.0 1.6 2 0 0 2 2 2 0 HTH domain Cas9_a PF18470.1 gi|219852258|ref|YP_002466690.1| - 0.016 14.8 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 Cas9 alpha-helical lobe domain TrmB PF01978.19 gi|219852258|ref|YP_002466690.1| - 0.025 14.5 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|219852258|ref|YP_002466690.1| - 0.061 13.2 1.0 0.11 12.3 0.3 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|219852258|ref|YP_002466690.1| - 0.096 12.5 0.2 0.096 12.5 0.2 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HATPase_c PF02518.26 gi|219852259|ref|YP_002466691.1| - 1.1e-22 80.6 0.1 2.4e-22 79.6 0.1 1.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|219852259|ref|YP_002466691.1| - 5.8e-13 48.7 2.2 9.1e-12 44.8 0.1 3.2 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|219852259|ref|YP_002466691.1| - 7.5e-12 45.5 0.0 1.4e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|219852259|ref|YP_002466691.1| - 7.5e-09 35.6 0.1 2.3e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|219852259|ref|YP_002466691.1| - 4.6e-05 23.6 0.0 0.00012 22.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|219852259|ref|YP_002466691.1| - 0.00076 19.5 0.0 0.0018 18.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|219852259|ref|YP_002466691.1| - 0.0069 16.7 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|219852259|ref|YP_002466691.1| - 0.0073 16.2 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 GHKL domain BPD_transp_1 PF00528.22 gi|219852260|ref|YP_002466692.1| - 3.5e-19 69.3 13.4 3.5e-19 69.3 13.4 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|219852261|ref|YP_002466693.1| - 2.4e-34 118.8 0.0 3.7e-34 118.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852261|ref|YP_002466693.1| - 4.9e-14 52.8 0.1 3.6e-08 33.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852261|ref|YP_002466693.1| - 9.4e-07 28.5 0.0 3.2e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|219852261|ref|YP_002466693.1| - 5.2e-05 23.2 0.1 9.2e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|219852261|ref|YP_002466693.1| - 0.0001 22.8 0.0 0.00019 21.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|219852261|ref|YP_002466693.1| - 0.00082 18.8 0.0 0.005 16.2 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|219852261|ref|YP_002466693.1| - 0.0014 19.0 0.0 0.0076 16.7 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|219852261|ref|YP_002466693.1| - 0.0015 18.3 0.1 0.0037 17.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|219852261|ref|YP_002466693.1| - 0.0018 18.6 0.3 0.014 15.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|219852261|ref|YP_002466693.1| - 0.0019 17.9 0.1 0.0036 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219852261|ref|YP_002466693.1| - 0.0051 17.3 0.3 0.0081 16.7 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|219852261|ref|YP_002466693.1| - 0.0067 15.1 0.0 1.3 7.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain PEPCK_ATP PF01293.20 gi|219852261|ref|YP_002466693.1| - 0.0086 14.8 0.2 0.014 14.1 0.2 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase IstB_IS21 PF01695.17 gi|219852261|ref|YP_002466693.1| - 0.017 14.9 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|219852261|ref|YP_002466693.1| - 0.017 15.4 0.3 0.037 14.3 0.2 1.8 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|219852261|ref|YP_002466693.1| - 0.02 15.0 0.1 0.031 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|219852261|ref|YP_002466693.1| - 0.036 12.9 1.4 9 5.0 0.2 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|219852261|ref|YP_002466693.1| - 0.037 14.3 0.3 0.3 11.3 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 gi|219852261|ref|YP_002466693.1| - 0.063 12.8 0.1 0.097 12.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|219852261|ref|YP_002466693.1| - 0.075 13.1 0.0 0.2 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|219852261|ref|YP_002466693.1| - 0.084 12.9 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|219852261|ref|YP_002466693.1| - 0.09 12.5 0.0 1.4 8.6 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain BCA_ABC_TP_C PF12399.8 gi|219852261|ref|YP_002466693.1| - 0.19 11.7 0.2 0.49 10.4 0.2 1.7 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter BPD_transp_1 PF00528.22 gi|219852262|ref|YP_002466694.1| - 2e-16 60.2 12.0 2e-16 60.2 12.0 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FA_desaturase PF00487.24 gi|219852262|ref|YP_002466694.1| - 3.2 7.5 5.6 5.2 6.8 5.6 1.4 1 0 0 1 1 1 0 Fatty acid desaturase PAS_9 PF13426.7 gi|219852263|ref|YP_002466695.1| - 1.5e-43 147.2 0.0 6.4e-17 61.7 0.0 4.9 5 0 0 5 5 5 4 PAS domain PAS PF00989.25 gi|219852263|ref|YP_002466695.1| - 1.7e-35 121.4 0.1 7.5e-18 64.6 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.10 gi|219852263|ref|YP_002466695.1| - 1.8e-32 111.8 1.7 4.4e-14 52.7 0.2 4.3 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|219852263|ref|YP_002466695.1| - 4.8e-28 97.9 0.0 9.6e-28 96.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219852263|ref|YP_002466695.1| - 1.1e-17 64.1 0.0 7.6e-08 32.5 0.1 4.2 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|219852263|ref|YP_002466695.1| - 5e-15 55.1 0.2 0.0059 16.6 0.0 4.7 4 0 0 4 4 4 3 PAS domain HisKA PF00512.25 gi|219852263|ref|YP_002466695.1| - 1.9e-10 40.7 0.0 1.9e-10 40.7 0.0 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|219852263|ref|YP_002466695.1| - 0.0029 17.8 0.1 1.6 8.9 0.0 4.0 3 2 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 gi|219852263|ref|YP_002466695.1| - 0.0062 16.4 0.0 0.022 14.7 0.0 2.0 1 1 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|219852263|ref|YP_002466695.1| - 0.01 16.4 0.0 2.9 8.5 0.0 2.9 3 0 0 3 3 2 0 PAS domain DivIC PF04977.15 gi|219852263|ref|YP_002466695.1| - 0.028 14.2 1.5 0.092 12.5 1.5 2.0 1 0 0 1 1 1 0 Septum formation initiator HATPase_c_3 PF13589.6 gi|219852263|ref|YP_002466695.1| - 0.082 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Herpes_BLRF2 PF05812.12 gi|219852263|ref|YP_002466695.1| - 0.33 11.1 2.4 17 5.6 0.3 2.9 3 0 0 3 3 3 0 Herpesvirus BLRF2 protein Prefoldin PF02996.17 gi|219852263|ref|YP_002466695.1| - 1.4 8.8 3.6 0.58 10.1 0.4 2.0 2 0 0 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|219852263|ref|YP_002466695.1| - 5.1 7.1 7.2 0.6 10.1 2.1 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 KaiB PF07689.12 gi|219852264|ref|YP_002466696.1| - 4.2e-18 64.9 0.0 5.2e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 KaiB domain KaiB PF07689.12 gi|219852265|ref|YP_002466697.1| - 5.1e-26 90.2 0.1 5.9e-26 90.0 0.1 1.0 1 0 0 1 1 1 1 KaiB domain ATPase PF06745.13 gi|219852266|ref|YP_002466698.1| - 2e-104 348.0 0.0 4.3e-67 225.8 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|219852266|ref|YP_002466698.1| - 1.1e-13 51.2 0.1 1.3e-05 24.9 0.0 2.7 3 0 0 3 3 2 2 AAA domain DnaB_C PF03796.15 gi|219852266|ref|YP_002466698.1| - 7.7e-12 45.1 0.0 9.4e-05 21.9 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|219852266|ref|YP_002466698.1| - 2.5e-09 37.7 4.9 5.8e-06 26.8 0.1 3.4 3 1 0 3 3 3 2 AAA ATPase domain RecA PF00154.21 gi|219852266|ref|YP_002466698.1| - 3.7e-09 36.4 0.0 0.00038 20.0 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein GvpD PF07088.11 gi|219852266|ref|YP_002466698.1| - 2.1e-08 33.2 0.0 8.1e-06 24.7 0.0 2.7 3 0 0 3 3 3 1 GvpD gas vesicle protein AAA PF00004.29 gi|219852266|ref|YP_002466698.1| - 4.4e-08 33.6 0.0 0.00089 19.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|219852266|ref|YP_002466698.1| - 1.5e-07 31.5 0.1 0.0011 18.9 0.0 2.5 2 0 0 2 2 2 2 NACHT domain IstB_IS21 PF01695.17 gi|219852266|ref|YP_002466698.1| - 3.9e-07 30.0 0.0 0.00077 19.2 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|219852266|ref|YP_002466698.1| - 1.8e-06 27.8 0.0 0.0077 16.0 0.0 2.5 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|219852266|ref|YP_002466698.1| - 8.4e-06 25.3 0.0 0.078 12.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|219852266|ref|YP_002466698.1| - 1.2e-05 25.7 0.0 0.0045 17.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|219852266|ref|YP_002466698.1| - 5.1e-05 23.6 0.0 0.18 12.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain MEDS PF14417.6 gi|219852266|ref|YP_002466698.1| - 0.00013 21.8 0.4 0.0044 16.9 0.0 2.9 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAXNEB PF05625.11 gi|219852266|ref|YP_002466698.1| - 0.00014 21.1 1.3 0.019 14.1 0.0 2.3 2 0 0 2 2 2 1 PAXNEB protein Rad51 PF08423.11 gi|219852266|ref|YP_002466698.1| - 0.00017 21.0 0.4 0.79 8.9 0.0 3.0 3 1 0 3 3 3 2 Rad51 AAA_28 PF13521.6 gi|219852266|ref|YP_002466698.1| - 0.00043 20.6 3.1 0.79 10.0 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|219852266|ref|YP_002466698.1| - 0.00086 19.3 0.0 1.6 8.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|219852266|ref|YP_002466698.1| - 0.001 18.4 0.1 0.29 10.4 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin RNA_helicase PF00910.22 gi|219852266|ref|YP_002466698.1| - 0.0011 19.3 0.0 2.5 8.5 0.0 2.4 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|219852266|ref|YP_002466698.1| - 0.0017 17.9 0.1 1.1 8.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|219852266|ref|YP_002466698.1| - 0.0022 17.7 0.1 0.6 9.8 0.0 2.9 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.26 gi|219852266|ref|YP_002466698.1| - 0.0031 17.2 0.1 0.42 10.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain T2SSE PF00437.20 gi|219852266|ref|YP_002466698.1| - 0.0032 16.6 0.1 0.52 9.3 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.14 gi|219852266|ref|YP_002466698.1| - 0.0057 16.7 0.1 1.8 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|219852266|ref|YP_002466698.1| - 0.0098 16.4 0.3 8.2 7.0 0.0 2.9 3 0 0 3 3 2 0 AAA domain ATPase_2 PF01637.18 gi|219852266|ref|YP_002466698.1| - 0.015 15.2 0.1 1.5 8.7 0.0 2.6 3 0 0 3 3 2 0 ATPase domain predominantly from Archaea AAA_35 PF14516.6 gi|219852266|ref|YP_002466698.1| - 0.019 13.8 0.0 0.037 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain UvrD-helicase PF00580.21 gi|219852266|ref|YP_002466698.1| - 0.025 14.1 0.3 5.4 6.4 0.0 2.5 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain TIP49 PF06068.13 gi|219852266|ref|YP_002466698.1| - 0.028 13.6 0.6 3.4 6.8 0.0 2.4 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_11 PF13086.6 gi|219852266|ref|YP_002466698.1| - 0.031 14.0 0.6 21 4.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain Viral_helicase1 PF01443.18 gi|219852266|ref|YP_002466698.1| - 0.046 13.5 0.0 4.9 6.8 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase TniB PF05621.11 gi|219852266|ref|YP_002466698.1| - 0.049 13.0 0.1 1.2 8.5 0.0 2.7 2 1 0 2 2 2 0 Bacterial TniB protein PhoH PF02562.16 gi|219852266|ref|YP_002466698.1| - 0.055 12.9 0.1 2.5 7.5 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein Roc PF08477.13 gi|219852266|ref|YP_002466698.1| - 0.077 13.2 0.0 1.5 9.1 0.0 2.5 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase Mg_chelatase PF01078.21 gi|219852266|ref|YP_002466698.1| - 0.094 12.1 0.2 15 4.9 0.1 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|219852266|ref|YP_002466698.1| - 0.1 12.6 0.2 4.3 7.3 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP-synt_ab PF00006.25 gi|219852266|ref|YP_002466698.1| - 0.1 12.2 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.15 gi|219852266|ref|YP_002466698.1| - 0.12 12.3 0.3 27 4.6 0.0 3.2 3 1 0 3 3 3 0 NTPase Hpr_kinase_C PF07475.12 gi|219852266|ref|YP_002466698.1| - 0.14 11.7 0.4 16 4.9 0.0 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DEAD PF00270.29 gi|219852266|ref|YP_002466698.1| - 0.14 11.9 0.0 15 5.3 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase SBP_bac_3 PF00497.20 gi|219852267|ref|YP_002466699.1| - 2.1e-57 194.1 1.6 3.2e-57 193.5 1.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|219852267|ref|YP_002466699.1| - 5.5e-10 39.5 0.1 1.5e-07 31.6 0.0 3.2 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site HmuY PF14064.6 gi|219852267|ref|YP_002466699.1| - 0.027 14.7 4.6 0.14 12.3 4.6 2.0 1 1 0 1 1 1 0 HmuY protein PAS_8 PF13188.7 gi|219852268|ref|YP_002466700.1| - 7.6e-11 41.8 0.0 1.9e-10 40.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|219852268|ref|YP_002466700.1| - 1.2e-09 38.1 0.0 1.8e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|219852268|ref|YP_002466700.1| - 8.9e-09 35.5 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|219852268|ref|YP_002466700.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 PAS fold Herpes_LMP1 PF05297.11 gi|219852268|ref|YP_002466700.1| - 8.5 5.5 8.4 13 4.9 8.4 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) UvrD-helicase PF00580.21 gi|219852269|ref|YP_002466701.1| - 1.4e-47 162.8 0.0 2.3e-24 86.5 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|219852269|ref|YP_002466701.1| - 1.8e-37 129.5 0.0 1.6e-21 77.1 0.0 2.1 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|219852269|ref|YP_002466701.1| - 9.9e-27 94.1 0.0 1.7e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|219852269|ref|YP_002466701.1| - 6.5e-23 81.9 0.0 1.7e-22 80.6 0.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|219852269|ref|YP_002466701.1| - 1.6e-10 40.7 0.1 0.00039 20.2 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|219852269|ref|YP_002466701.1| - 1.6e-06 27.9 0.1 0.0056 16.4 0.0 2.6 3 0 0 3 3 3 2 AAA domain Cas_Cas4 PF01930.17 gi|219852269|ref|YP_002466701.1| - 1.1e-05 25.7 0.0 4e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 Viral_helicase1 PF01443.18 gi|219852269|ref|YP_002466701.1| - 0.0012 18.7 0.0 3.8 7.2 0.0 3.9 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase Exonuc_V_gamma PF04257.14 gi|219852269|ref|YP_002466701.1| - 0.063 11.5 0.0 0.12 10.6 0.0 1.4 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit AAA_22 PF13401.6 gi|219852269|ref|YP_002466701.1| - 0.071 13.4 0.1 18 5.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain E1-E2_ATPase PF00122.20 gi|219852270|ref|YP_002466702.1| - 1.8e-37 128.6 4.1 1.8e-37 128.6 4.1 2.8 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|219852270|ref|YP_002466702.1| - 6e-35 120.6 8.5 6e-35 120.6 8.5 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|219852270|ref|YP_002466702.1| - 1.2e-19 71.5 0.9 2.6e-19 70.3 0.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|219852270|ref|YP_002466702.1| - 3.5e-16 59.1 0.0 7.3e-16 58.0 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|219852270|ref|YP_002466702.1| - 3.1e-12 46.0 0.0 7.2e-12 44.8 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.7 gi|219852270|ref|YP_002466702.1| - 0.00012 22.5 0.2 0.00047 20.6 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|219852270|ref|YP_002466702.1| - 0.00021 21.1 0.5 0.0013 18.5 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase S_4TM PF18159.1 gi|219852270|ref|YP_002466702.1| - 0.0047 16.3 4.2 1.1 8.5 0.1 2.6 2 0 0 2 2 2 2 SMODS-associating 4TM effector domain FeoB_N PF02421.18 gi|219852271|ref|YP_002466703.1| - 7.4e-59 197.7 0.0 1.2e-58 197.1 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|219852271|ref|YP_002466703.1| - 3.6e-20 72.3 25.6 1.7e-10 41.2 10.6 2.9 3 0 0 3 3 3 2 Nucleoside recognition FeoB_Cyto PF17910.1 gi|219852271|ref|YP_002466703.1| - 5e-17 62.2 0.1 7.7e-17 61.6 0.1 1.3 1 0 0 1 1 1 1 FeoB cytosolic helical domain MMR_HSR1 PF01926.23 gi|219852271|ref|YP_002466703.1| - 9.8e-17 61.1 0.0 1.8e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|219852271|ref|YP_002466703.1| - 6e-16 57.9 0.3 6e-16 57.9 0.3 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 gi|219852271|ref|YP_002466703.1| - 4.6e-05 22.8 0.0 7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 gi|219852271|ref|YP_002466703.1| - 0.0024 17.4 0.0 0.0083 15.7 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|219852271|ref|YP_002466703.1| - 0.0036 16.8 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|219852271|ref|YP_002466703.1| - 0.047 13.6 0.1 5.6 6.8 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase Fe_dep_repr_C PF02742.15 gi|219852272|ref|YP_002466704.1| - 2.3e-28 98.0 0.9 5.1e-28 97.0 0.4 1.9 3 0 0 3 3 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|219852272|ref|YP_002466704.1| - 1.6e-20 73.0 0.2 4.9e-20 71.5 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|219852272|ref|YP_002466704.1| - 2.3e-13 50.2 0.3 4.1e-13 49.4 0.3 1.5 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.7 gi|219852272|ref|YP_002466704.1| - 4.6e-06 26.4 0.1 2.3e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|219852272|ref|YP_002466704.1| - 0.0003 20.6 0.0 0.0014 18.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|219852272|ref|YP_002466704.1| - 0.00086 19.2 0.0 0.0022 17.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|219852272|ref|YP_002466704.1| - 0.0017 18.3 0.0 0.0058 16.6 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|219852272|ref|YP_002466704.1| - 0.003 17.2 0.0 0.0074 15.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|219852272|ref|YP_002466704.1| - 0.0044 17.5 0.0 0.011 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|219852272|ref|YP_002466704.1| - 0.012 16.0 0.0 0.022 15.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|219852272|ref|YP_002466704.1| - 0.018 14.9 0.0 0.05 13.4 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|219852272|ref|YP_002466704.1| - 0.031 14.4 0.0 0.087 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|219852272|ref|YP_002466704.1| - 0.057 13.0 0.0 0.15 11.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|219852272|ref|YP_002466704.1| - 0.085 12.9 0.2 0.17 11.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix TusA PF01206.17 gi|219852273|ref|YP_002466705.1| - 1.1e-21 76.5 0.0 1.2e-21 76.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE PF02635.15 gi|219852274|ref|YP_002466706.1| - 1.2e-19 70.8 0.0 1.3e-19 70.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|219852274|ref|YP_002466706.1| - 2.4e-17 63.2 0.1 4e-08 33.3 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family Aminotran_5 PF00266.19 gi|219852275|ref|YP_002466707.1| - 6.7e-63 212.9 0.0 8.1e-63 212.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219852275|ref|YP_002466707.1| - 0.011 15.0 0.2 0.016 14.5 0.2 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase NifU_N PF01592.16 gi|219852276|ref|YP_002466708.1| - 2.3e-49 166.8 0.2 2.8e-49 166.5 0.2 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain TSCPD PF12637.7 gi|219852276|ref|YP_002466708.1| - 0.0083 16.3 0.4 0.019 15.2 0.4 1.6 1 1 0 1 1 1 1 TSCPD domain CO_deh_flav_C PF03450.17 gi|219852276|ref|YP_002466708.1| - 0.1 12.8 0.1 0.19 11.9 0.1 1.4 1 1 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain HTH_3 PF01381.22 gi|219852278|ref|YP_002466710.1| - 7.5e-13 48.3 0.0 8.5e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|219852278|ref|YP_002466710.1| - 3.3e-09 36.6 0.1 3.8e-09 36.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|219852278|ref|YP_002466710.1| - 2.4e-05 24.6 0.0 3e-05 24.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|219852278|ref|YP_002466710.1| - 0.00026 21.4 0.0 0.00029 21.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain DUF2178 PF09946.9 gi|219852279|ref|YP_002466711.1| - 1.8e-12 47.3 1.2 1.8e-12 47.3 1.2 1.4 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) Lig_chan PF00060.26 gi|219852279|ref|YP_002466711.1| - 0.047 13.5 0.9 5.5 6.8 0.1 2.3 2 1 0 2 2 2 0 Ligand-gated ion channel Peptidase_M50B PF13398.6 gi|219852279|ref|YP_002466711.1| - 0.24 11.0 5.6 0.039 13.6 1.4 1.7 2 0 0 2 2 2 0 Peptidase M50B-like DUF3290 PF11694.8 gi|219852279|ref|YP_002466711.1| - 0.48 10.4 5.9 0.14 12.1 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF4381 PF14316.6 gi|219852279|ref|YP_002466711.1| - 2.7 8.2 5.2 3.5 7.9 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Nitroreductase PF00881.24 gi|219852280|ref|YP_002466712.1| - 5.5e-29 101.4 0.0 6.6e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|219852280|ref|YP_002466712.1| - 6.2e-07 29.2 0.0 7.8e-06 25.6 0.0 2.3 2 1 0 2 2 2 1 Putative TM nitroreductase Rubrerythrin PF02915.17 gi|219852281|ref|YP_002466713.1| - 1.6e-29 103.1 3.4 2.2e-29 102.6 3.4 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|219852281|ref|YP_002466713.1| - 6.1e-07 29.5 0.8 7.6e-07 29.2 0.8 1.1 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.19 gi|219852281|ref|YP_002466713.1| - 0.0052 16.8 0.2 0.011 15.8 0.2 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2HC5 PF06221.13 gi|219852281|ref|YP_002466713.1| - 0.014 15.4 0.3 0.023 14.6 0.3 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Ferritin_2 PF13668.6 gi|219852281|ref|YP_002466713.1| - 0.014 15.6 1.0 0.027 14.7 1.0 1.6 1 1 0 1 1 1 0 Ferritin-like domain PHD_4 PF16866.5 gi|219852281|ref|YP_002466713.1| - 0.046 13.8 0.6 0.083 13.0 0.0 1.8 2 0 0 2 2 2 0 PHD-finger Rubredoxin PF00301.20 gi|219852281|ref|YP_002466713.1| - 0.056 13.5 2.8 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.7 gi|219852281|ref|YP_002466713.1| - 0.064 13.3 2.2 0.097 12.7 2.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HalOD2 PF18547.1 gi|219852281|ref|YP_002466713.1| - 0.071 13.0 3.5 0.15 12.0 0.3 2.6 2 1 1 3 3 3 0 Halobacterial output domain 2 tRNA-synt_1g PF09334.11 gi|219852281|ref|YP_002466713.1| - 0.073 11.8 0.1 0.1 11.3 0.1 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (M) COQ7 PF03232.13 gi|219852281|ref|YP_002466713.1| - 0.13 12.1 1.3 0.13 12.0 0.2 1.5 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 OrfB_Zn_ribbon PF07282.11 gi|219852281|ref|YP_002466713.1| - 0.16 11.9 1.4 0.85 9.6 1.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|219852281|ref|YP_002466713.1| - 0.27 10.7 3.6 4.1 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Aminotran_1_2 PF00155.21 gi|219852282|ref|YP_002466714.1| - 3.3e-31 108.8 0.0 4.1e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|219852282|ref|YP_002466714.1| - 7.7e-06 24.9 0.0 1.1e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|219852282|ref|YP_002466714.1| - 0.15 10.7 0.0 0.21 10.2 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III AA_permease_2 PF13520.6 gi|219852283|ref|YP_002466715.1| - 1.9e-42 145.6 55.7 2.2e-42 145.4 55.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|219852283|ref|YP_002466715.1| - 3.1e-18 65.6 51.1 1.2e-17 63.6 51.1 1.7 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|219852283|ref|YP_002466715.1| - 2.5e-07 29.9 19.9 2.5e-07 29.9 19.9 2.3 2 1 0 2 2 2 1 Spore germination protein DNA_alkylation PF08713.11 gi|219852284|ref|YP_002466716.1| - 1.2e-63 214.6 0.7 1.4e-63 214.5 0.7 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Flavodoxin_5 PF12724.7 gi|219852285|ref|YP_002466717.1| - 6.1e-32 110.8 0.0 6.8e-32 110.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|219852285|ref|YP_002466717.1| - 1.1e-05 25.6 0.1 2.3e-05 24.6 0.1 1.6 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|219852285|ref|YP_002466717.1| - 0.00012 21.8 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Transketolase_C PF02780.20 gi|219852285|ref|YP_002466717.1| - 0.082 12.8 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain FMN_red PF03358.15 gi|219852285|ref|YP_002466717.1| - 0.082 12.6 0.4 9.7 5.9 0.0 2.4 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Prenylcys_lyase PF07156.14 gi|219852285|ref|YP_002466717.1| - 0.22 10.6 0.0 16 4.5 0.0 2.1 2 0 0 2 2 2 0 Prenylcysteine lyase NosD PF05048.13 gi|219852286|ref|YP_002466718.1| - 1.3e-50 171.9 48.5 9.7e-38 129.8 27.3 2.7 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219852286|ref|YP_002466718.1| - 1e-20 74.2 43.1 9.8e-15 54.8 19.1 3.2 2 1 1 3 3 3 2 Right handed beta helix region Peptidase_S8 PF00082.22 gi|219852286|ref|YP_002466718.1| - 5e-17 62.1 0.1 5e-17 62.1 0.1 3.9 2 1 1 3 3 3 1 Subtilase family PKD PF00801.20 gi|219852286|ref|YP_002466718.1| - 5.4e-14 51.8 2.1 1.8e-13 50.2 2.1 1.8 1 0 0 1 1 1 1 PKD domain EF-hand_8 PF13833.6 gi|219852286|ref|YP_002466718.1| - 0.12 12.2 0.5 0.31 10.9 0.5 1.7 1 0 0 1 1 1 0 EF-hand domain pair Mucin_bdg PF03272.13 gi|219852286|ref|YP_002466718.1| - 0.7 9.9 4.2 4.7 7.3 0.3 3.1 3 1 0 3 3 3 0 Putative mucin or carbohydrate-binding module DUF4082 PF13313.6 gi|219852286|ref|YP_002466718.1| - 2.4 8.2 8.9 0.52 10.4 4.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4082) HATPase_c PF02518.26 gi|219852287|ref|YP_002466719.1| - 5.5e-13 49.4 0.1 1.8e-12 47.7 0.1 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219852287|ref|YP_002466719.1| - 7e-08 32.7 0.1 1.6e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|219852287|ref|YP_002466719.1| - 5.4e-07 29.6 0.1 1.3e-06 28.4 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|219852287|ref|YP_002466719.1| - 0.00026 21.2 0.0 0.00046 20.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219852287|ref|YP_002466719.1| - 0.0012 18.8 0.0 0.0028 17.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|219852287|ref|YP_002466719.1| - 0.0037 17.1 0.0 0.013 15.3 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APG6_N PF17675.1 gi|219852287|ref|YP_002466719.1| - 0.012 16.1 4.1 0.029 14.9 4.1 1.6 1 0 0 1 1 1 0 Apg6 coiled-coil region HATPase_c_2 PF13581.6 gi|219852287|ref|YP_002466719.1| - 0.026 14.5 0.1 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF349 PF03993.12 gi|219852287|ref|YP_002466719.1| - 0.11 12.8 2.4 0.29 11.5 2.4 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) OmdA PF13376.6 gi|219852287|ref|YP_002466719.1| - 0.14 12.2 1.3 13 5.9 0.1 3.0 2 1 1 3 3 3 0 Bacteriocin-protection, YdeI or OmpD-Associated Flavodoxin_3 PF12641.7 gi|219852287|ref|YP_002466719.1| - 0.15 11.8 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 Flavodoxin domain TMF_TATA_bd PF12325.8 gi|219852287|ref|YP_002466719.1| - 0.21 11.8 5.7 0.56 10.4 5.7 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DivIC PF04977.15 gi|219852287|ref|YP_002466719.1| - 0.37 10.6 7.0 8.3 6.3 2.9 2.6 2 0 0 2 2 2 0 Septum formation initiator CENP-H PF05837.12 gi|219852287|ref|YP_002466719.1| - 1 9.8 4.3 0.44 11.0 1.2 1.9 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Phage_integrase PF00589.22 gi|219852288|ref|YP_002466720.1| - 4.1e-33 114.6 0.0 6.5e-33 113.9 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|219852288|ref|YP_002466720.1| - 1.3e-13 51.0 1.7 2.6e-13 50.0 0.4 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|219852288|ref|YP_002466720.1| - 7.2e-10 39.2 0.1 2e-09 37.8 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|219852288|ref|YP_002466720.1| - 0.00017 21.8 0.1 0.0051 17.1 0.1 2.9 2 1 0 2 2 2 1 Phage integrase SAM-like domain Hexapep PF00132.24 gi|219852289|ref|YP_002466721.1| - 1.1e-09 37.6 9.8 2.6e-06 26.9 2.6 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|219852289|ref|YP_002466721.1| - 6.4e-05 22.6 11.4 0.00052 19.7 3.9 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase TMP-TENI PF02581.17 gi|219852290|ref|YP_002466722.1| - 1.7e-57 193.6 0.8 2e-57 193.5 0.8 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|219852290|ref|YP_002466722.1| - 0.00021 20.8 6.9 0.0011 18.4 6.8 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.12 gi|219852290|ref|YP_002466722.1| - 0.002 17.3 1.8 0.0063 15.7 0.9 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|219852290|ref|YP_002466722.1| - 0.0049 16.4 0.2 0.013 14.9 0.1 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein PRAI PF00697.22 gi|219852290|ref|YP_002466722.1| - 0.0088 15.8 0.1 0.029 14.2 0.2 1.7 2 0 0 2 2 2 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ThiG PF05690.14 gi|219852290|ref|YP_002466722.1| - 0.28 10.4 4.3 0.05 12.9 0.6 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG HK PF02110.15 gi|219852291|ref|YP_002466723.1| - 4.4e-79 265.3 7.4 5e-79 265.2 7.4 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|219852291|ref|YP_002466723.1| - 5e-05 22.8 3.0 6.9e-05 22.3 2.5 1.3 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|219852291|ref|YP_002466723.1| - 0.00016 21.2 1.5 0.0002 20.9 1.5 1.2 1 0 0 1 1 1 1 Carbohydrate kinase NikR_C PF08753.11 gi|219852291|ref|YP_002466723.1| - 0.18 12.0 0.1 0.41 10.8 0.1 1.6 1 0 0 1 1 1 0 NikR C terminal nickel binding domain CbiQ PF02361.16 gi|219852292|ref|YP_002466724.1| - 1.3e-29 103.4 12.8 2e-29 102.8 12.8 1.2 1 0 0 1 1 1 1 Cobalt transport protein CitMHS PF03600.16 gi|219852292|ref|YP_002466724.1| - 0.35 10.0 15.7 0.48 9.6 15.7 1.2 1 0 0 1 1 1 0 Citrate transporter ABC_tran PF00005.27 gi|219852293|ref|YP_002466725.1| - 1.9e-58 196.9 0.2 6.1e-30 104.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|219852293|ref|YP_002466725.1| - 3.9e-17 63.0 6.5 1.7e-06 28.1 0.0 4.3 2 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852293|ref|YP_002466725.1| - 1.2e-15 57.6 3.1 3.3e-10 39.8 0.1 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|219852293|ref|YP_002466725.1| - 5.2e-08 33.5 4.7 0.00053 20.4 0.1 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|219852293|ref|YP_002466725.1| - 8.5e-08 31.8 1.8 0.0076 16.0 0.2 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219852293|ref|YP_002466725.1| - 2.1e-07 31.6 0.2 0.017 15.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|219852293|ref|YP_002466725.1| - 3.8e-06 26.7 5.4 0.023 14.4 0.0 4.2 5 0 0 5 5 4 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|219852293|ref|YP_002466725.1| - 5.6e-06 26.1 1.9 0.0067 16.0 0.0 3.3 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|219852293|ref|YP_002466725.1| - 1.2e-05 25.3 0.1 0.19 11.6 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|219852293|ref|YP_002466725.1| - 2.2e-05 24.7 9.2 0.1 12.8 0.0 4.3 2 2 1 3 3 3 2 AAA domain T2SSE PF00437.20 gi|219852293|ref|YP_002466725.1| - 2.4e-05 23.5 0.4 0.00031 19.9 0.2 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein TsaE PF02367.17 gi|219852293|ref|YP_002466725.1| - 3.4e-05 23.9 0.4 0.32 11.0 0.1 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|219852293|ref|YP_002466725.1| - 5.1e-05 23.4 2.8 0.54 10.5 0.2 4.5 3 2 0 3 3 3 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|219852293|ref|YP_002466725.1| - 5.2e-05 23.3 0.3 0.035 14.1 0.0 3.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|219852293|ref|YP_002466725.1| - 6.3e-05 22.8 7.9 0.034 13.9 1.7 3.4 2 2 1 3 3 3 2 AAA domain Mg_chelatase PF01078.21 gi|219852293|ref|YP_002466725.1| - 7.5e-05 22.2 0.4 0.034 13.5 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|219852293|ref|YP_002466725.1| - 0.00014 21.9 0.6 0.19 11.7 0.0 2.7 2 0 0 2 2 2 2 NACHT domain SRP54 PF00448.22 gi|219852293|ref|YP_002466725.1| - 0.00015 21.4 0.2 0.15 11.6 0.0 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|219852293|ref|YP_002466725.1| - 0.00017 21.2 0.3 0.31 10.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|219852293|ref|YP_002466725.1| - 0.00044 20.0 0.3 0.69 9.7 0.0 2.7 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|219852293|ref|YP_002466725.1| - 0.00063 20.0 0.4 0.05 13.8 0.1 2.6 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase PhoH PF02562.16 gi|219852293|ref|YP_002466725.1| - 0.00079 18.9 0.4 0.052 13.0 0.2 2.7 2 0 0 2 2 2 1 PhoH-like protein AAA_18 PF13238.6 gi|219852293|ref|YP_002466725.1| - 0.00094 19.7 7.7 0.95 10.0 1.6 4.0 3 1 1 4 4 4 2 AAA domain RNA_helicase PF00910.22 gi|219852293|ref|YP_002466725.1| - 0.0011 19.3 0.0 0.44 11.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA PF00004.29 gi|219852293|ref|YP_002466725.1| - 0.0014 19.0 3.5 1.6 9.2 0.1 3.5 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|219852293|ref|YP_002466725.1| - 0.0016 18.2 3.2 0.3 10.8 0.0 2.9 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.6 gi|219852293|ref|YP_002466725.1| - 0.002 18.5 11.4 1.8 8.9 0.0 4.1 3 1 0 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|219852293|ref|YP_002466725.1| - 0.0021 17.9 0.1 0.0021 17.9 0.1 2.1 2 1 0 3 3 2 1 AAA ATPase domain cobW PF02492.19 gi|219852293|ref|YP_002466725.1| - 0.0025 17.4 2.7 0.33 10.5 0.3 2.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|219852293|ref|YP_002466725.1| - 0.0035 17.6 1.9 2.6 8.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain Zot PF05707.12 gi|219852293|ref|YP_002466725.1| - 0.005 16.5 0.5 0.17 11.5 0.0 2.8 2 1 1 3 3 3 1 Zonular occludens toxin (Zot) DLIC PF05783.11 gi|219852293|ref|YP_002466725.1| - 0.0057 15.5 0.6 0.13 11.1 0.1 2.3 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|219852293|ref|YP_002466725.1| - 0.0065 16.4 6.8 0.097 12.6 0.5 3.3 4 0 0 4 4 4 1 NTPase AAA_27 PF13514.6 gi|219852293|ref|YP_002466725.1| - 0.01 15.4 0.2 0.68 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|219852293|ref|YP_002466725.1| - 0.014 15.3 0.1 5.8 6.8 0.0 2.6 3 0 0 3 3 2 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|219852293|ref|YP_002466725.1| - 0.015 14.6 1.0 2.7 7.2 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin ATP_bind_1 PF03029.17 gi|219852293|ref|YP_002466725.1| - 0.015 15.1 0.7 4.3 7.1 0.2 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.6 gi|219852293|ref|YP_002466725.1| - 0.023 14.7 0.8 3.3 7.8 0.1 3.3 3 1 0 3 3 3 0 AAA domain DUF815 PF05673.13 gi|219852293|ref|YP_002466725.1| - 0.025 13.7 0.2 0.095 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ATPase PF06745.13 gi|219852293|ref|YP_002466725.1| - 0.034 13.5 3.3 3.2 7.0 0.1 2.9 3 0 0 3 3 3 0 KaiC NB-ARC PF00931.22 gi|219852293|ref|YP_002466725.1| - 0.036 13.3 0.7 9.6 5.3 0.2 2.9 3 0 0 3 3 3 0 NB-ARC domain AAA_33 PF13671.6 gi|219852293|ref|YP_002466725.1| - 0.037 14.2 4.4 2.4 8.3 0.9 2.9 2 2 0 2 2 2 0 AAA domain DUF2813 PF11398.8 gi|219852293|ref|YP_002466725.1| - 0.078 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) APS_kinase PF01583.20 gi|219852293|ref|YP_002466725.1| - 0.081 12.8 0.8 1.2 9.0 0.1 2.7 2 0 0 2 2 2 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 gi|219852293|ref|YP_002466725.1| - 0.13 12.3 2.2 4.8 7.3 0.2 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.14 gi|219852293|ref|YP_002466725.1| - 0.21 11.5 1.9 4.3 7.3 0.1 3.1 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|219852293|ref|YP_002466725.1| - 0.31 10.8 1.1 20 4.8 0.0 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DEAD PF00270.29 gi|219852293|ref|YP_002466725.1| - 0.62 9.8 6.3 0.7 9.6 2.4 3.1 2 2 0 2 2 2 0 DEAD/DEAH box helicase ABC_ATPase PF09818.9 gi|219852293|ref|YP_002466725.1| - 6.5 5.4 8.0 27 3.4 0.9 3.7 3 1 0 3 3 3 0 Predicted ATPase of the ABC class CbiA PF01656.23 gi|219852293|ref|YP_002466725.1| - 6.8 6.8 5.3 13 5.8 0.4 3.3 4 1 0 4 4 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTP_transf_3 PF12804.7 gi|219852295|ref|YP_002466727.1| - 1.9e-27 96.6 0.0 2.3e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|219852295|ref|YP_002466727.1| - 0.0085 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DNA_binding_1 PF01035.20 gi|219852297|ref|YP_002466729.1| - 8.9e-24 83.4 0.1 1.1e-23 83.1 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Helicase_C_2 PF13307.6 gi|219852298|ref|YP_002466730.1| - 1e-32 113.7 0.0 3.6e-32 111.9 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|219852298|ref|YP_002466730.1| - 2e-15 56.9 2.5 2.1e-13 50.3 2.5 3.3 1 1 0 1 1 1 1 DEAD_2 HBB PF06777.11 gi|219852298|ref|YP_002466730.1| - 2.2e-11 43.8 0.1 4.1e-11 42.9 0.1 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain ResIII PF04851.15 gi|219852298|ref|YP_002466730.1| - 1.6e-05 25.0 0.0 0.03 14.3 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|219852298|ref|YP_002466730.1| - 0.0034 17.7 0.3 0.39 11.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|219852298|ref|YP_002466730.1| - 0.016 15.6 3.5 0.073 13.4 0.1 3.2 5 0 0 5 5 5 0 AAA ATPase domain DEAD PF00270.29 gi|219852298|ref|YP_002466730.1| - 0.056 13.2 0.2 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|219852298|ref|YP_002466730.1| - 0.11 12.2 0.4 0.36 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain Fer4_12 PF13353.6 gi|219852299|ref|YP_002466731.1| - 2.7e-07 30.9 0.0 5.5e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|219852299|ref|YP_002466731.1| - 1.7e-05 25.3 1.1 1.7e-05 25.3 1.1 2.6 2 2 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|219852299|ref|YP_002466731.1| - 0.0077 16.4 0.1 0.02 15.0 0.1 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|219852299|ref|YP_002466731.1| - 0.022 15.3 0.1 0.057 13.9 0.1 1.7 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain Lyase_1 PF00206.20 gi|219852300|ref|YP_002466732.1| - 1.1e-53 182.6 0.9 2.1e-53 181.8 0.0 1.7 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.9 gi|219852300|ref|YP_002466732.1| - 2.5e-19 69.6 0.8 2.5e-19 69.6 0.8 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|219852300|ref|YP_002466732.1| - 1.4e-06 28.4 0.4 1.4e-06 28.4 0.4 1.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal ANTAR PF03861.14 gi|219852300|ref|YP_002466732.1| - 0.0085 15.9 3.2 0.027 14.3 3.2 1.9 1 0 0 1 1 1 1 ANTAR domain DUF993 PF06187.11 gi|219852300|ref|YP_002466732.1| - 0.033 13.1 0.3 0.068 12.1 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF993) Crp PF00325.20 gi|219852300|ref|YP_002466732.1| - 0.12 12.0 0.0 0.47 10.1 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family ASL_C2 PF14698.6 gi|219852300|ref|YP_002466732.1| - 0.48 11.2 2.8 0.94 10.3 0.1 2.7 2 1 0 2 2 2 0 Argininosuccinate lyase C-terminal HSCB_C PF07743.13 gi|219852300|ref|YP_002466732.1| - 1.4 9.5 5.7 11 6.7 0.7 3.0 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain CbiM PF01891.16 gi|219852301|ref|YP_002466733.1| - 6.8e-56 189.4 16.7 7.7e-56 189.2 16.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Baculo_11_kDa PF06143.11 gi|219852301|ref|YP_002466733.1| - 0.37 10.4 1.5 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family CbiN PF02553.15 gi|219852302|ref|YP_002466734.1| - 1.2e-18 66.8 0.3 1.7e-18 66.3 0.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|219852303|ref|YP_002466735.1| - 8.7e-37 126.9 9.6 8.7e-37 126.9 9.6 1.3 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|219852304|ref|YP_002466736.1| - 1.9e-29 102.9 0.0 3.5e-29 102.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852304|ref|YP_002466736.1| - 8.7e-15 55.3 0.8 3.4e-10 40.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852304|ref|YP_002466736.1| - 2e-05 24.2 0.1 0.001 18.5 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|219852304|ref|YP_002466736.1| - 0.00047 19.9 0.0 0.53 10.0 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.6 gi|219852304|ref|YP_002466736.1| - 0.0016 18.2 0.0 0.0031 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|219852304|ref|YP_002466736.1| - 0.0049 16.6 0.0 2.3 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|219852304|ref|YP_002466736.1| - 0.0099 14.6 0.1 0.33 9.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|219852304|ref|YP_002466736.1| - 0.017 15.6 0.1 0.029 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|219852304|ref|YP_002466736.1| - 0.032 14.0 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|219852304|ref|YP_002466736.1| - 0.074 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|219852304|ref|YP_002466736.1| - 0.11 12.0 0.0 0.45 10.0 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region PAS_4 PF08448.10 gi|219852305|ref|YP_002466737.1| - 1.4e-19 70.3 0.0 1.9e-06 28.1 0.0 4.9 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|219852305|ref|YP_002466737.1| - 4.6e-18 65.4 0.0 0.00032 20.9 0.0 4.8 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|219852305|ref|YP_002466737.1| - 8e-17 61.3 0.1 2.5e-06 27.7 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|219852305|ref|YP_002466737.1| - 9.6e-16 57.8 0.5 4.1e-06 26.8 0.0 4.5 4 1 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|219852305|ref|YP_002466737.1| - 2.7e-07 30.5 0.9 0.1 12.7 0.0 4.3 4 0 0 4 4 4 2 PAS domain Sigma70_r4_2 PF08281.12 gi|219852305|ref|YP_002466737.1| - 0.0051 16.5 0.2 0.025 14.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|219852305|ref|YP_002466737.1| - 0.0071 16.8 0.3 0.083 13.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|219852305|ref|YP_002466737.1| - 0.012 15.3 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|219852305|ref|YP_002466737.1| - 0.043 13.8 0.1 0.14 12.2 0.1 1.9 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|219852305|ref|YP_002466737.1| - 0.047 13.7 0.3 0.26 11.3 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|219852305|ref|YP_002466737.1| - 0.13 11.9 0.1 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TBPIP PF07106.13 gi|219852305|ref|YP_002466737.1| - 0.17 11.8 0.0 0.53 10.3 0.0 1.8 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain MCPsignal PF00015.21 gi|219852306|ref|YP_002466738.1| - 6e-42 143.4 38.3 1.1e-41 142.5 21.1 6.1 3 2 4 7 7 7 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|219852306|ref|YP_002466738.1| - 4.8e-05 23.5 40.3 0.63 10.3 2.6 9.1 5 4 3 8 8 7 2 Bacterial protein of unknown function (DUF948) PAS_4 PF08448.10 gi|219852306|ref|YP_002466738.1| - 0.0059 16.8 0.0 0.75 10.1 0.0 2.9 2 0 0 2 2 2 1 PAS fold Fib_alpha PF08702.10 gi|219852306|ref|YP_002466738.1| - 0.025 14.7 8.1 1.1 9.4 0.2 4.9 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family PAS PF00989.25 gi|219852306|ref|YP_002466738.1| - 0.049 13.6 0.0 0.17 11.9 0.0 1.9 1 0 0 1 1 1 0 PAS fold Tweety PF04906.13 gi|219852306|ref|YP_002466738.1| - 0.063 11.9 13.2 0.12 11.0 1.5 4.9 5 0 0 5 5 5 0 Tweety Ferritin PF00210.24 gi|219852306|ref|YP_002466738.1| - 0.14 12.1 4.2 0.18 11.7 0.4 2.9 2 1 0 2 2 2 0 Ferritin-like domain Baculo_PEP_C PF04513.12 gi|219852306|ref|YP_002466738.1| - 0.15 12.1 43.2 1.4 9.0 1.7 7.1 1 1 5 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus Serine_rich PF08824.10 gi|219852306|ref|YP_002466738.1| - 0.23 11.5 5.0 3.2 7.7 0.6 4.0 1 1 3 4 4 4 0 Serine rich protein interaction domain EzrA PF06160.12 gi|219852306|ref|YP_002466738.1| - 0.23 9.6 7.9 0.15 10.2 1.0 3.0 2 1 0 3 3 3 0 Septation ring formation regulator, EzrA KAR9 PF08580.10 gi|219852306|ref|YP_002466738.1| - 0.32 9.5 4.2 0.091 11.3 0.4 1.9 2 0 0 2 2 2 0 Yeast cortical protein KAR9 AIP3 PF03915.13 gi|219852306|ref|YP_002466738.1| - 0.53 9.3 6.8 2.2 7.3 6.7 2.0 1 1 0 1 1 1 0 Actin interacting protein 3 Sigma70_ner PF04546.13 gi|219852306|ref|YP_002466738.1| - 0.55 10.1 10.3 0.69 9.8 2.3 3.0 2 0 0 2 2 2 0 Sigma-70, non-essential region Syntaxin-6_N PF09177.11 gi|219852306|ref|YP_002466738.1| - 1 10.0 9.9 7.8 7.1 0.9 4.5 3 1 1 4 4 4 0 Syntaxin 6, N-terminal DUF1351 PF07083.11 gi|219852306|ref|YP_002466738.1| - 1.2 8.8 6.3 0.55 10.0 0.4 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1351) Spc7 PF08317.11 gi|219852306|ref|YP_002466738.1| - 1.5 7.6 10.3 1.1 8.1 1.5 2.6 2 0 0 2 2 2 0 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|219852306|ref|YP_002466738.1| - 2.3 8.6 17.2 44 4.5 1.7 6.6 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Muted PF14942.6 gi|219852306|ref|YP_002466738.1| - 2.9 8.2 12.4 7.8 6.8 0.7 5.1 5 1 0 5 5 5 0 Organelle biogenesis, Muted-like protein ERM PF00769.19 gi|219852306|ref|YP_002466738.1| - 3.6 7.3 9.7 0.99 9.2 0.3 2.8 3 0 0 3 3 3 0 Ezrin/radixin/moesin family DUF2203 PF09969.9 gi|219852306|ref|YP_002466738.1| - 4 8.2 14.8 14 6.4 0.4 5.4 2 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) Sec34 PF04136.15 gi|219852306|ref|YP_002466738.1| - 5.7 6.8 8.3 12 5.7 0.3 4.7 5 1 1 6 6 5 0 Sec34-like family I_LWEQ PF01608.17 gi|219852306|ref|YP_002466738.1| - 9.7 6.4 24.1 0.53 10.5 10.8 3.7 2 1 0 2 2 2 0 I/LWEQ domain CheW PF01584.19 gi|219852307|ref|YP_002466739.1| - 2.1e-28 98.7 1.0 2.5e-28 98.4 1.0 1.1 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 gi|219852308|ref|YP_002466740.1| - 2.1e-22 79.4 0.0 5.4e-22 78.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|219852308|ref|YP_002466740.1| - 2.3e-15 57.1 0.0 1.2e-14 54.8 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|219852308|ref|YP_002466740.1| - 1.8e-13 50.5 0.0 1.9e-06 27.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852308|ref|YP_002466740.1| - 7.6e-10 39.0 0.0 6.6e-05 23.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|219852308|ref|YP_002466740.1| - 1.7e-08 34.6 0.0 5.6e-06 26.6 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|219852308|ref|YP_002466740.1| - 2.4e-08 34.2 0.0 0.00094 19.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold GAF PF01590.26 gi|219852308|ref|YP_002466740.1| - 6.5e-05 23.6 0.0 0.00013 22.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain DUF2433 PF10360.9 gi|219852308|ref|YP_002466740.1| - 0.0016 18.5 0.0 0.0091 16.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2433) PAS_8 PF13188.7 gi|219852308|ref|YP_002466740.1| - 0.0019 18.2 0.1 0.0056 16.7 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|219852308|ref|YP_002466740.1| - 0.0051 17.0 0.7 0.015 15.4 0.0 2.2 3 0 0 3 3 3 1 PAS fold Phosphorylase PF00343.20 gi|219852308|ref|YP_002466740.1| - 0.13 10.5 0.1 0.2 9.9 0.1 1.2 1 0 0 1 1 1 0 Carbohydrate phosphorylase SpoVT_C PF15714.5 gi|219852308|ref|YP_002466740.1| - 0.15 12.1 0.0 0.6 10.2 0.0 2.0 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor MCPsignal PF00015.21 gi|219852309|ref|YP_002466741.1| - 9.9e-41 139.4 20.1 9.9e-41 139.4 20.1 6.0 3 1 3 6 6 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|219852309|ref|YP_002466741.1| - 1.8e-15 57.0 3.4 2.5 8.5 0.0 14.5 15 2 1 16 16 14 2 HAMP domain PAS_4 PF08448.10 gi|219852309|ref|YP_002466741.1| - 1.5e-11 44.5 0.0 4.1e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|219852309|ref|YP_002466741.1| - 9.4e-10 38.7 0.0 7.1e-09 35.9 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|219852309|ref|YP_002466741.1| - 1.6e-07 31.3 0.0 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 1 PAS fold MnmE_helical PF12631.7 gi|219852309|ref|YP_002466741.1| - 7.2e-05 23.0 22.1 0.01 16.0 3.5 5.9 3 1 2 5 5 5 2 MnmE helical domain HAMP_N3 PF18575.1 gi|219852309|ref|YP_002466741.1| - 0.0047 16.5 0.0 0.68 9.6 0.0 4.4 4 0 0 4 4 4 1 HAMP N-terminal domain 3 DASH_Duo1 PF08651.10 gi|219852309|ref|YP_002466741.1| - 0.0049 16.6 4.9 24 4.8 0.1 7.5 7 0 0 7 7 7 0 DASH complex subunit Duo1 PAS_8 PF13188.7 gi|219852309|ref|YP_002466741.1| - 0.024 14.7 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 PAS domain PAS_10 PF13596.6 gi|219852309|ref|YP_002466741.1| - 0.071 13.7 0.0 1.8 9.2 0.0 3.3 3 0 0 3 3 3 0 PAS domain Tht1 PF04163.12 gi|219852309|ref|YP_002466741.1| - 0.072 11.8 1.3 0.21 10.3 1.3 1.8 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein Ferritin PF00210.24 gi|219852309|ref|YP_002466741.1| - 0.076 12.9 1.5 0.27 11.2 0.1 2.6 2 0 0 2 2 2 0 Ferritin-like domain Syntaxin-6_N PF09177.11 gi|219852309|ref|YP_002466741.1| - 0.41 11.2 4.8 18 6.0 0.6 4.8 3 1 1 4 4 4 0 Syntaxin 6, N-terminal Sec34 PF04136.15 gi|219852309|ref|YP_002466741.1| - 1.6 8.6 4.1 25 4.7 0.1 4.5 5 0 0 5 5 5 0 Sec34-like family Tweety PF04906.13 gi|219852309|ref|YP_002466741.1| - 2.1 6.9 6.8 0.79 8.3 0.5 3.1 3 0 0 3 3 3 0 Tweety Sigma70_ner PF04546.13 gi|219852309|ref|YP_002466741.1| - 3 7.7 6.6 5.2 6.9 0.3 3.1 2 0 0 2 2 2 0 Sigma-70, non-essential region DUF948 PF06103.11 gi|219852309|ref|YP_002466741.1| - 3.7 7.9 37.0 3.3 8.0 4.1 9.4 8 2 3 11 11 8 0 Bacterial protein of unknown function (DUF948) 4HB_MCP_1 PF12729.7 gi|219852309|ref|YP_002466741.1| - 4.9 6.7 8.4 1.9 8.0 0.0 4.1 4 1 0 4 4 4 0 Four helix bundle sensory module for signal transduction LPG_synthase_TM PF03706.13 gi|219852310|ref|YP_002466742.1| - 1.4e-49 169.2 31.1 1.8e-49 168.9 31.1 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region MttA_Hcf106 PF02416.16 gi|219852310|ref|YP_002466742.1| - 0.41 10.0 2.1 4.3 6.7 0.2 3.2 3 0 0 3 3 3 0 mttA/Hcf106 family DUF4175 PF13779.6 gi|219852310|ref|YP_002466742.1| - 0.42 8.5 1.7 0.63 7.9 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) H_PPase PF03030.16 gi|219852311|ref|YP_002466743.1| - 2.6e-251 835.9 46.3 2.9e-251 835.7 46.3 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase K_trans PF02705.16 gi|219852312|ref|YP_002466744.1| - 2.2e-161 538.0 43.9 2.5e-161 537.8 43.9 1.0 1 0 0 1 1 1 1 K+ potassium transporter PfkB PF00294.24 gi|219852313|ref|YP_002466745.1| - 3e-47 161.4 0.0 3.4e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|219852313|ref|YP_002466745.1| - 7.4e-06 25.5 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase TP_methylase PF00590.20 gi|219852314|ref|YP_002466746.1| - 7e-17 62.1 3.3 1.8e-15 57.5 3.3 2.4 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|219852315|ref|YP_002466747.1| - 4.7e-46 157.1 0.2 7e-46 156.6 0.2 1.2 1 0 0 1 1 1 1 CbiD CbiC PF02570.15 gi|219852316|ref|YP_002466748.1| - 5.4e-62 208.9 1.1 6.3e-62 208.7 1.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|219852317|ref|YP_002466749.1| - 1.3e-37 129.8 0.8 1.5e-37 129.6 0.8 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|219852318|ref|YP_002466750.1| - 7.3e-29 99.6 0.4 1.9e-28 98.3 0.1 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|219852318|ref|YP_002466750.1| - 4.3e-23 82.1 0.0 8.5e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|219852319|ref|YP_002466751.1| - 4.6e-48 164.0 2.4 5.4e-48 163.7 2.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|219852319|ref|YP_002466751.1| - 0.00062 20.2 0.0 0.0013 19.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily TP_methylase PF00590.20 gi|219852320|ref|YP_002466752.1| - 2.3e-31 109.4 0.1 3e-31 109.0 0.1 1.2 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|219852321|ref|YP_002466753.1| - 1.1e-12 48.0 0.6 1.4e-12 47.7 0.6 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852321|ref|YP_002466753.1| - 4.4e-12 46.6 0.4 6.9e-12 45.9 0.4 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852321|ref|YP_002466753.1| - 1.6e-08 35.1 0.2 3.6e-08 33.9 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|219852321|ref|YP_002466753.1| - 6e-08 32.3 0.0 9.7e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|219852321|ref|YP_002466753.1| - 4.2e-07 30.0 0.1 5.2e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852321|ref|YP_002466753.1| - 1e-06 28.3 0.2 1.6e-06 27.6 0.1 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|219852321|ref|YP_002466753.1| - 2.3e-06 27.3 0.2 3.9e-06 26.5 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|219852321|ref|YP_002466753.1| - 1.3e-05 24.7 2.2 1.6e-05 24.5 2.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|219852321|ref|YP_002466753.1| - 3.3e-05 23.8 0.1 4.8e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|219852321|ref|YP_002466753.1| - 3.6e-05 23.2 0.0 5e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|219852321|ref|YP_002466753.1| - 0.00026 22.0 0.1 0.00056 20.9 0.1 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852321|ref|YP_002466753.1| - 0.00057 20.6 0.0 0.00075 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852321|ref|YP_002466753.1| - 0.00098 19.0 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|219852321|ref|YP_002466753.1| - 0.0012 18.9 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|219852321|ref|YP_002466753.1| - 0.0017 17.5 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_15 PF09445.10 gi|219852321|ref|YP_002466753.1| - 0.0024 17.4 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|219852321|ref|YP_002466753.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Met_10 PF02475.16 gi|219852321|ref|YP_002466753.1| - 0.034 13.9 0.1 0.05 13.4 0.1 1.3 1 1 0 1 1 1 0 Met-10+ like-protein DOT1 PF08123.13 gi|219852321|ref|YP_002466753.1| - 0.041 13.4 0.1 0.062 12.8 0.1 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 GidB PF02527.15 gi|219852321|ref|YP_002466753.1| - 0.048 13.0 0.2 0.057 12.7 0.2 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G N6_N4_Mtase PF01555.18 gi|219852321|ref|YP_002466753.1| - 0.081 12.6 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 DNA methylase Methyltransf_9 PF08003.11 gi|219852321|ref|YP_002466753.1| - 0.16 10.9 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TP_methylase PF00590.20 gi|219852322|ref|YP_002466754.1| - 5.1e-47 160.6 0.2 6.1e-47 160.3 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|219852322|ref|YP_002466754.1| - 0.02 15.3 0.1 0.055 13.8 0.1 1.9 1 1 0 1 1 1 0 Radical SAM superfamily Porphobil_deam PF01379.20 gi|219852323|ref|YP_002466755.1| - 8.1e-66 221.4 0.0 9.8e-66 221.1 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|219852323|ref|YP_002466755.1| - 3.9e-10 40.0 0.1 8.3e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|219852324|ref|YP_002466756.1| - 9.8e-60 202.3 0.0 1.4e-59 201.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III ALAD PF00490.21 gi|219852325|ref|YP_002466757.1| - 3.2e-125 417.5 0.0 3.6e-125 417.4 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.15 gi|219852326|ref|YP_002466758.1| - 4.3e-36 123.9 0.8 9.9e-36 122.7 0.2 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|219852326|ref|YP_002466758.1| - 2.3e-34 118.4 0.0 5.1e-34 117.3 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|219852326|ref|YP_002466758.1| - 1.1e-13 51.5 3.0 2.2e-13 50.4 2.1 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|219852326|ref|YP_002466758.1| - 0.00084 18.9 0.2 0.0015 18.0 0.2 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus F420_oxidored PF03807.17 gi|219852326|ref|YP_002466758.1| - 0.0016 19.0 0.1 0.0042 17.6 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|219852326|ref|YP_002466758.1| - 0.0059 16.9 0.2 0.019 15.2 0.2 1.9 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|219852326|ref|YP_002466758.1| - 0.0063 15.9 0.1 0.011 15.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|219852326|ref|YP_002466758.1| - 0.011 16.1 0.5 0.029 14.8 0.1 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|219852326|ref|YP_002466758.1| - 0.032 13.5 0.5 0.075 12.2 0.4 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NBD_C PF17042.5 gi|219852326|ref|YP_002466758.1| - 0.22 12.0 8.8 0.12 12.9 2.2 2.3 2 0 0 2 2 2 0 Nucleotide-binding C-terminal domain Adhesin_P1_N PF18652.1 gi|219852326|ref|YP_002466758.1| - 0.92 9.6 0.0 0.92 9.6 0.0 2.8 3 0 0 3 3 3 0 Adhesin P1 N-terminal domain NAD_binding_7 PF13241.6 gi|219852327|ref|YP_002466759.1| - 1e-17 64.5 0.0 1.8e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|219852327|ref|YP_002466759.1| - 4e-08 32.5 0.4 1.3e-07 30.9 0.1 2.1 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central NAD_binding_10 PF13460.6 gi|219852327|ref|YP_002466759.1| - 0.034 14.0 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding CBS PF00571.28 gi|219852328|ref|YP_002466760.1| - 1.9e-22 79.5 0.9 7.4e-11 42.3 0.4 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|219852328|ref|YP_002466760.1| - 1.8e-15 56.7 0.6 3.9e-15 55.6 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|219852328|ref|YP_002466760.1| - 1.3e-09 38.2 0.1 2.2e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|219852328|ref|YP_002466760.1| - 2.3e-08 34.0 0.0 4.8e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|219852328|ref|YP_002466760.1| - 3.8e-05 24.0 0.0 8.3e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|219852328|ref|YP_002466760.1| - 0.00072 19.5 0.1 0.0016 18.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|219852328|ref|YP_002466760.1| - 0.0013 18.5 0.1 0.0037 17.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DRE2_N PF16803.5 gi|219852328|ref|YP_002466760.1| - 0.0025 18.0 0.0 0.0037 17.5 0.0 1.3 1 0 0 1 1 1 1 Fe-S cluster assembly protein DRE2 N-terminus MqsA_antitoxin PF15731.5 gi|219852328|ref|YP_002466760.1| - 0.011 15.9 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Sigma70_r4 PF04545.16 gi|219852328|ref|YP_002466760.1| - 0.017 14.6 0.2 0.056 13.0 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 MarR PF01047.22 gi|219852328|ref|YP_002466760.1| - 0.021 14.7 0.1 0.19 11.7 0.0 2.5 3 0 0 3 3 3 0 MarR family MarR_2 PF12802.7 gi|219852328|ref|YP_002466760.1| - 0.073 13.0 0.0 0.28 11.1 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|219852328|ref|YP_002466760.1| - 0.1 12.2 0.1 0.54 9.9 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding LacI PF00356.21 gi|219852328|ref|YP_002466760.1| - 0.15 11.9 1.4 4.7 7.1 0.1 3.0 2 1 1 3 3 3 0 Bacterial regulatory proteins, lacI family HTH_6 PF01418.17 gi|219852328|ref|YP_002466760.1| - 0.16 11.9 1.2 0.31 11.1 0.1 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain, rpiR family TIM PF00121.18 gi|219852329|ref|YP_002466761.1| - 2e-14 53.6 0.1 4.2e-13 49.2 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.14 gi|219852329|ref|YP_002466761.1| - 0.0039 16.5 0.5 0.0039 16.5 0.5 2.0 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|219852329|ref|YP_002466761.1| - 0.02 14.4 0.1 1.4 8.3 0.1 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein Peptidase_U32 PF01136.19 gi|219852330|ref|YP_002466762.1| - 2.5e-92 308.2 0.0 7.1e-78 261.0 0.0 3.0 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|219852330|ref|YP_002466762.1| - 2.9e-15 56.8 0.0 5.5e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Collagenase DUF167 PF02594.16 gi|219852331|ref|YP_002466763.1| - 5.9e-21 74.4 0.0 6.9e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Amidohydro_1 PF01979.20 gi|219852332|ref|YP_002466764.1| - 4.1e-11 42.8 0.0 1.3e-10 41.2 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|219852332|ref|YP_002466764.1| - 1.1e-09 38.3 4.9 0.00011 21.9 0.7 2.2 1 1 0 2 2 2 2 Amidohydrolase family Prolactin_RP PF15172.6 gi|219852332|ref|YP_002466764.1| - 0.049 13.3 0.5 0.094 12.4 0.5 1.4 1 0 0 1 1 1 0 Prolactin-releasing peptide Biotin_lipoyl_2 PF13533.6 gi|219852332|ref|YP_002466764.1| - 0.16 11.9 0.1 0.39 10.6 0.1 1.6 1 0 0 1 1 1 0 Biotin-lipoyl like AIRS_C PF02769.22 gi|219852333|ref|YP_002466765.1| - 4.4e-29 101.6 2.2 7.3e-29 100.9 2.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|219852333|ref|YP_002466765.1| - 1.5e-17 64.0 2.2 1.5e-17 64.0 2.2 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain HypA PF01155.19 gi|219852334|ref|YP_002466766.1| - 2.2e-24 85.6 0.1 2.5e-24 85.4 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF5029 PF16432.5 gi|219852334|ref|YP_002466766.1| - 0.089 12.3 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5029) HupF_HypC PF01455.18 gi|219852335|ref|YP_002466767.1| - 2.8e-23 81.8 0.4 3.3e-23 81.6 0.4 1.1 1 0 0 1 1 1 1 HupF/HypC family Condensation PF00668.20 gi|219852337|ref|YP_002466769.1| - 1e-07 31.0 0.0 0.00051 18.8 0.0 3.1 3 1 0 3 3 3 2 Condensation domain PapA_C PF16911.5 gi|219852337|ref|YP_002466769.1| - 0.06 13.4 0.0 0.19 11.8 0.0 1.9 1 1 0 1 1 1 0 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus DNA_pol_B PF00136.21 gi|219852338|ref|YP_002466770.1| - 2.2e-46 158.5 0.0 3.8e-46 157.7 0.0 1.3 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|219852338|ref|YP_002466770.1| - 4.3e-28 98.4 0.0 8e-27 94.2 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|219852338|ref|YP_002466770.1| - 0.02 14.9 0.0 0.16 11.9 0.0 2.6 1 1 0 1 1 1 0 RNase_H superfamily Ldh_1_N PF00056.23 gi|219852339|ref|YP_002466771.1| - 5.3e-14 52.5 0.0 7.3e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|219852339|ref|YP_002466771.1| - 7.6e-12 45.5 0.0 2.2e-11 44.0 0.0 1.7 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DHO_dh PF01180.21 gi|219852340|ref|YP_002466772.1| - 4.7e-52 177.0 0.0 5.8e-52 176.7 0.0 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|219852340|ref|YP_002466772.1| - 7.5e-10 38.4 0.0 0.00065 18.9 0.0 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|219852340|ref|YP_002466772.1| - 1.9e-08 34.1 0.3 3.5e-08 33.2 0.3 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|219852340|ref|YP_002466772.1| - 1.7e-05 24.4 0.0 4.5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|219852340|ref|YP_002466772.1| - 0.0027 16.8 0.3 0.004 16.2 0.3 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|219852340|ref|YP_002466772.1| - 0.009 15.4 1.3 0.02 14.3 0.1 2.0 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.12 gi|219852340|ref|YP_002466772.1| - 0.0099 15.1 0.2 0.016 14.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF561) FMN_dh PF01070.18 gi|219852340|ref|YP_002466772.1| - 0.014 14.4 0.3 0.022 13.8 0.3 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase ThiG PF05690.14 gi|219852340|ref|YP_002466772.1| - 0.052 12.9 0.1 0.085 12.2 0.1 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.17 gi|219852340|ref|YP_002466772.1| - 0.38 9.8 1.6 0.64 9.1 0.1 1.8 2 0 0 2 2 2 0 Conserved region in glutamate synthase DHODB_Fe-S_bind PF10418.9 gi|219852341|ref|YP_002466773.1| - 4.5e-12 45.6 11.7 1.5e-10 40.7 9.4 2.4 2 0 0 2 2 2 2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|219852341|ref|YP_002466773.1| - 0.0094 16.6 0.3 0.055 14.1 0.3 2.2 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|219852341|ref|YP_002466773.1| - 0.044 14.1 0.0 0.56 10.6 0.0 2.2 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain LAMTOR5 PF16672.5 gi|219852341|ref|YP_002466773.1| - 0.13 12.2 0.2 0.26 11.2 0.2 1.5 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 AdoMet_Synthase PF01941.19 gi|219852342|ref|YP_002466774.1| - 4.5e-173 575.6 0.1 5.1e-173 575.4 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.18 gi|219852343|ref|YP_002466775.1| - 4.3e-50 169.8 0.1 7.4e-50 169.0 0.1 1.4 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|219852343|ref|YP_002466775.1| - 9.4e-27 93.0 0.1 2.3e-26 91.7 0.1 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|219852343|ref|YP_002466775.1| - 0.00015 21.8 0.0 0.01 15.8 0.0 2.7 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|219852343|ref|YP_002466775.1| - 0.011 15.2 0.0 0.019 14.4 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 His_biosynth PF00977.21 gi|219852344|ref|YP_002466776.1| - 2.1e-66 223.7 0.8 2.4e-66 223.5 0.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|219852344|ref|YP_002466776.1| - 2.1e-08 33.6 0.0 0.0013 17.9 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|219852344|ref|YP_002466776.1| - 1.2e-05 24.7 1.9 0.017 14.4 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|219852344|ref|YP_002466776.1| - 0.00043 19.5 0.2 0.6 9.3 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|219852344|ref|YP_002466776.1| - 0.0024 17.3 0.8 0.028 13.8 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|219852344|ref|YP_002466776.1| - 0.011 15.0 1.6 0.16 11.1 0.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|219852344|ref|YP_002466776.1| - 0.023 13.9 0.1 0.37 9.9 0.0 2.2 2 1 1 3 3 3 0 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|219852344|ref|YP_002466776.1| - 0.039 13.3 0.3 0.039 13.3 0.3 1.9 2 0 0 2 2 2 0 Nitronate monooxygenase IMPDH PF00478.25 gi|219852344|ref|YP_002466776.1| - 0.64 9.0 4.6 2.2 7.2 0.7 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPD PF00475.18 gi|219852345|ref|YP_002466777.1| - 1.4e-61 207.0 0.5 1.7e-61 206.7 0.5 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase CBFD_NFYB_HMF PF00808.23 gi|219852346|ref|YP_002466778.1| - 2e-15 56.8 0.7 2.2e-15 56.7 0.7 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|219852346|ref|YP_002466778.1| - 5.4e-12 46.2 0.2 5.5e-12 46.2 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|219852346|ref|YP_002466778.1| - 3.4e-09 36.8 0.1 3.5e-09 36.7 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|219852346|ref|YP_002466778.1| - 5.5e-06 26.7 0.0 5.6e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein Bromo_TP PF07524.13 gi|219852346|ref|YP_002466778.1| - 0.00022 21.1 0.0 0.00023 21.1 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.17 gi|219852346|ref|YP_002466778.1| - 0.00069 19.7 0.8 0.00072 19.7 0.8 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|219852346|ref|YP_002466778.1| - 0.0025 17.9 0.1 0.0025 17.9 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|219852346|ref|YP_002466778.1| - 0.0076 16.7 0.0 0.008 16.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|219852346|ref|YP_002466778.1| - 0.0083 16.1 0.0 0.012 15.7 0.0 1.3 1 1 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit AAA_32 PF13654.6 gi|219852346|ref|YP_002466778.1| - 0.032 13.0 1.1 0.028 13.2 1.1 1.1 1 0 0 1 1 1 0 AAA domain AIRS PF00586.24 gi|219852348|ref|YP_002466780.1| - 2.9e-18 66.3 0.2 9.1e-18 64.7 0.1 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|219852348|ref|YP_002466780.1| - 2.4e-17 63.5 0.0 4.4e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AAA PF00004.29 gi|219852349|ref|YP_002466781.1| - 7.2e-12 45.9 0.0 3.4e-11 43.7 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|219852349|ref|YP_002466781.1| - 0.00026 21.3 0.3 0.71 10.1 0.1 3.1 2 1 1 3 3 3 2 AAA domain RFC1 PF08519.12 gi|219852349|ref|YP_002466781.1| - 0.00031 20.9 0.2 0.00057 20.1 0.2 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain RuvB_N PF05496.12 gi|219852349|ref|YP_002466781.1| - 0.0018 18.0 0.0 0.0035 17.1 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|219852349|ref|YP_002466781.1| - 0.0026 17.3 0.0 0.0054 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|219852349|ref|YP_002466781.1| - 0.0049 16.6 0.0 0.0097 15.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Rad17 PF03215.15 gi|219852349|ref|YP_002466781.1| - 0.0053 16.7 0.0 0.018 15.0 0.0 1.8 1 1 1 2 2 2 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|219852349|ref|YP_002466781.1| - 0.0071 16.1 0.0 0.03 14.0 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|219852349|ref|YP_002466781.1| - 0.015 14.8 0.1 0.055 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|219852349|ref|YP_002466781.1| - 0.03 14.0 1.3 0.035 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|219852349|ref|YP_002466781.1| - 0.032 14.4 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|219852349|ref|YP_002466781.1| - 0.034 14.5 0.2 0.14 12.5 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 gi|219852349|ref|YP_002466781.1| - 0.034 14.5 0.0 0.08 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|219852349|ref|YP_002466781.1| - 0.035 13.9 0.9 0.6 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|219852349|ref|YP_002466781.1| - 0.084 12.9 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_assoc_2 PF16193.5 gi|219852349|ref|YP_002466781.1| - 0.088 13.2 0.1 0.3 11.4 0.1 2.0 1 0 0 1 1 1 0 AAA C-terminal domain AAA_14 PF13173.6 gi|219852349|ref|YP_002466781.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0146 PF03686.13 gi|219852350|ref|YP_002466782.1| - 1.8e-20 73.1 0.1 2.1e-20 72.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.11 gi|219852351|ref|YP_002466783.1| - 7.1e-22 78.3 0.0 7.9e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|219852351|ref|YP_002466783.1| - 0.00022 21.1 0.0 0.00029 20.7 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M43 PF05572.13 gi|219852351|ref|YP_002466783.1| - 0.00065 19.6 0.0 0.001 19.0 0.0 1.3 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.6 gi|219852351|ref|YP_002466783.1| - 0.0058 17.1 0.0 0.0071 16.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|219852351|ref|YP_002466783.1| - 0.007 16.0 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|219852351|ref|YP_002466783.1| - 0.026 13.7 0.1 0.035 13.3 0.1 1.1 1 0 0 1 1 1 0 Met-zincin Reprolysin_5 PF13688.6 gi|219852351|ref|YP_002466783.1| - 0.064 13.4 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 AMP-binding PF00501.28 gi|219852352|ref|YP_002466784.1| - 8.7e-17 60.8 0.0 1.2e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme DUF1478 PF07349.11 gi|219852352|ref|YP_002466784.1| - 0.0043 17.0 0.0 0.0075 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1478) Response_reg PF00072.24 gi|219852353|ref|YP_002466785.1| - 3.7e-21 75.4 0.0 7.8e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219852353|ref|YP_002466785.1| - 4.6e-18 65.4 0.5 3e-08 33.8 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|219852353|ref|YP_002466785.1| - 6.8e-15 55.1 0.1 3.7e-06 27.1 0.0 2.9 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|219852353|ref|YP_002466785.1| - 9.4e-13 48.6 0.0 2.1e-12 47.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|219852353|ref|YP_002466785.1| - 2.5e-11 43.8 0.0 3.4e-07 30.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|219852353|ref|YP_002466785.1| - 8.3e-11 42.4 0.1 2.3e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219852353|ref|YP_002466785.1| - 9.2e-09 35.3 0.1 0.0017 18.4 0.0 3.5 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.6 gi|219852353|ref|YP_002466785.1| - 3.1e-05 24.3 0.0 8.7e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|219852353|ref|YP_002466785.1| - 0.00045 20.8 0.0 0.00096 19.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain SPOB_a PF14689.6 gi|219852353|ref|YP_002466785.1| - 0.0014 18.3 0.0 0.0041 16.8 0.0 1.8 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain CBM_6 PF03422.15 gi|219852354|ref|YP_002466786.1| - 5.5e-60 201.2 7.3 4.6e-19 68.9 0.1 5.2 4 2 0 4 4 4 3 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852354|ref|YP_002466786.1| - 3.1e-33 114.2 0.3 7.1e-11 42.2 0.0 4.8 5 0 0 5 5 5 3 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219852354|ref|YP_002466786.1| - 1.6e-13 50.9 0.1 2e-05 24.8 0.0 3.5 3 0 0 3 3 3 3 Carbohydrate binding module (family 35) PEGA PF08308.11 gi|219852354|ref|YP_002466786.1| - 4.5e-13 48.9 1.1 9.7e-12 44.6 0.0 3.6 5 0 0 5 5 5 1 PEGA domain Peptidase_C1 PF00112.23 gi|219852354|ref|YP_002466786.1| - 1.1e-08 35.5 2.4 1.8e-06 28.2 0.5 2.4 2 0 0 2 2 2 2 Papain family cysteine protease CarboxypepD_reg PF13620.6 gi|219852354|ref|YP_002466786.1| - 4.4e-05 23.7 1.1 0.011 16.0 0.0 4.2 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|219852354|ref|YP_002466786.1| - 0.04 13.9 0.1 1.3 9.1 0.0 3.3 4 0 0 4 4 4 0 CarboxypepD_reg-like domain Bac_rhamnosid_C PF17390.2 gi|219852354|ref|YP_002466786.1| - 0.12 12.2 0.1 12 5.7 0.0 3.1 2 0 0 2 2 2 0 Bacterial alpha-L-rhamnosidase C-terminal domain DUF5017 PF16409.5 gi|219852354|ref|YP_002466786.1| - 0.17 11.3 1.7 0.34 10.4 0.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5017) Cupin_2 PF07883.11 gi|219852355|ref|YP_002466787.1| - 5.3e-08 32.5 0.0 1.1e-07 31.4 0.0 1.5 1 1 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|219852355|ref|YP_002466787.1| - 2.1e-05 24.2 0.0 3.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|219852355|ref|YP_002466787.1| - 0.00041 20.3 0.0 0.00051 20.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|219852355|ref|YP_002466787.1| - 0.017 15.0 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain EutQ PF06249.12 gi|219852355|ref|YP_002466787.1| - 0.018 14.8 0.0 0.023 14.5 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DUF4437 PF14499.6 gi|219852355|ref|YP_002466787.1| - 0.15 11.2 0.0 0.22 10.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4437) CENP-C_C PF11699.8 gi|219852355|ref|YP_002466787.1| - 0.2 11.9 0.0 0.27 11.5 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like ABC_tran PF00005.27 gi|219852357|ref|YP_002466789.1| - 9e-27 94.3 0.0 1.4e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852357|ref|YP_002466789.1| - 7.2e-11 42.4 0.0 4.8e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852357|ref|YP_002466789.1| - 6.6e-10 38.8 0.0 8.2e-08 32.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219852357|ref|YP_002466789.1| - 0.00016 21.3 0.0 0.00029 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852357|ref|YP_002466789.1| - 0.00019 21.9 0.0 0.00028 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|219852357|ref|YP_002466789.1| - 0.00025 20.9 0.0 0.0098 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|219852357|ref|YP_002466789.1| - 0.00035 20.5 0.1 0.00079 19.4 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 gi|219852357|ref|YP_002466789.1| - 0.00036 21.1 0.0 0.068 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|219852357|ref|YP_002466789.1| - 0.0014 19.2 0.0 0.0022 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|219852357|ref|YP_002466789.1| - 0.0021 16.8 0.0 0.36 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|219852357|ref|YP_002466789.1| - 0.0054 17.0 0.0 0.0094 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|219852357|ref|YP_002466789.1| - 0.012 15.9 0.1 0.033 14.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|219852357|ref|YP_002466789.1| - 0.021 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|219852357|ref|YP_002466789.1| - 0.021 15.0 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|219852357|ref|YP_002466789.1| - 0.037 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|219852357|ref|YP_002466789.1| - 0.059 12.3 0.0 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Mg_chelatase PF01078.21 gi|219852357|ref|YP_002466789.1| - 0.097 12.0 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|219852357|ref|YP_002466789.1| - 0.15 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase MukB PF04310.12 gi|219852357|ref|YP_002466789.1| - 0.17 11.7 0.0 0.26 11.1 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal SdpI PF13630.6 gi|219852358|ref|YP_002466790.1| - 0.0044 17.1 1.2 0.0044 17.1 1.2 2.2 1 1 1 2 2 2 1 SdpI/YhfL protein family DUF1129 PF06570.11 gi|219852358|ref|YP_002466790.1| - 0.052 13.0 2.0 0.072 12.6 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Saf_2TM PF18303.1 gi|219852358|ref|YP_002466790.1| - 0.28 10.8 3.6 0.075 12.6 0.5 1.6 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain DUF373 PF04123.13 gi|219852358|ref|YP_002466790.1| - 1.6 8.1 12.0 0.49 9.8 6.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF2157 PF09925.9 gi|219852358|ref|YP_002466790.1| - 6.3 6.6 12.4 29 4.4 0.1 3.1 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) AAL_decarboxy PF03306.13 gi|219852359|ref|YP_002466791.1| - 9e-86 286.7 0.0 1e-85 286.5 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase SNARE_assoc PF09335.11 gi|219852360|ref|YP_002466792.1| - 0.0087 16.5 0.3 0.011 16.2 0.3 1.2 1 0 0 1 1 1 1 SNARE associated Golgi protein GtrA PF04138.14 gi|219852360|ref|YP_002466792.1| - 0.022 15.0 0.3 0.027 14.7 0.3 1.1 1 0 0 1 1 1 0 GtrA-like protein Acetyltransf_18 PF18014.1 gi|219852361|ref|YP_002466793.1| - 3.6e-29 101.1 0.0 5.6e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|219852361|ref|YP_002466793.1| - 5.8e-05 23.3 0.0 0.00014 22.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|219852361|ref|YP_002466793.1| - 0.014 15.9 0.2 0.031 14.7 0.2 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|219852361|ref|YP_002466793.1| - 0.082 12.8 0.0 0.3 11.0 0.1 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PKD PF00801.20 gi|219852362|ref|YP_002466794.1| - 3.4e-46 155.0 57.0 6.3e-11 42.0 2.4 6.9 8 0 0 8 8 8 5 PKD domain Dockerin_1 PF00404.18 gi|219852362|ref|YP_002466794.1| - 1.4e-05 25.1 0.4 3.6e-05 23.9 0.4 1.8 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219852362|ref|YP_002466794.1| - 2.1e-05 24.1 1.3 0.036 14.0 0.2 2.8 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219852362|ref|YP_002466794.1| - 3.2e-05 23.2 3.4 0.027 14.0 0.2 2.7 2 0 0 2 2 2 2 EF hand Beta_helix PF13229.6 gi|219852362|ref|YP_002466794.1| - 0.00016 21.6 5.0 0.00016 21.6 5.0 3.6 2 1 2 4 4 4 3 Right handed beta helix region EF-hand_8 PF13833.6 gi|219852362|ref|YP_002466794.1| - 0.091 12.6 3.0 0.78 9.6 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.6 gi|219852362|ref|YP_002466794.1| - 0.15 12.5 0.9 7.3 7.1 0.1 2.4 2 0 0 2 2 2 0 EF-hand domain pair PKD_3 PF16820.5 gi|219852362|ref|YP_002466794.1| - 0.22 11.3 8.4 6.9 6.5 0.1 4.3 5 0 0 5 5 5 0 PKD-like domain NnrU PF07298.11 gi|219852363|ref|YP_002466795.1| - 0.11 12.0 0.1 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 NnrU protein Zn_peptidase_2 PF04298.12 gi|219852364|ref|YP_002466796.1| - 0.042 13.2 1.1 0.046 13.1 1.1 1.1 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF4133 PF13571.6 gi|219852364|ref|YP_002466796.1| - 0.043 14.2 2.9 0.052 13.9 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) DUF2207 PF09972.9 gi|219852364|ref|YP_002466796.1| - 0.057 12.2 2.9 0.064 12.0 2.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Orthoreo_P10 PF07204.11 gi|219852364|ref|YP_002466796.1| - 0.077 13.0 0.2 0.1 12.5 0.2 1.2 1 1 0 1 1 1 0 Orthoreovirus membrane fusion protein p10 Sarcoglycan_1 PF04790.13 gi|219852364|ref|YP_002466796.1| - 0.1 11.9 2.7 0.1 11.9 2.7 1.0 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein BIV_Env PF05858.12 gi|219852364|ref|YP_002466796.1| - 0.29 9.3 3.5 0.31 9.2 3.5 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) Halogen_Hydrol PF10112.9 gi|219852364|ref|YP_002466796.1| - 0.31 11.1 1.9 0.31 11.1 1.9 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Ac81 PF05820.11 gi|219852364|ref|YP_002466796.1| - 0.35 10.4 1.5 0.42 10.1 1.5 1.1 1 0 0 1 1 1 0 Baculoviridae AC81 DUF4381 PF14316.6 gi|219852364|ref|YP_002466796.1| - 1.4 9.1 0.0 1.4 9.1 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) CheR PF01739.18 gi|219852365|ref|YP_002466797.1| - 1.7e-54 184.3 0.0 2.6e-54 183.7 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|219852365|ref|YP_002466797.1| - 1.1e-15 57.0 0.7 2.2e-15 56.1 0.7 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|219852365|ref|YP_002466797.1| - 0.0092 16.7 0.0 0.022 15.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain tRNA-synt_1e PF01406.19 gi|219852365|ref|YP_002466797.1| - 0.033 13.5 0.0 0.055 12.8 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain CheW PF01584.19 gi|219852366|ref|YP_002466798.1| - 7.6e-26 90.4 1.5 7.6e-26 90.4 1.5 2.7 3 0 0 3 3 3 1 CheW-like domain PAS PF00989.25 gi|219852366|ref|YP_002466798.1| - 1.3e-21 76.8 0.5 3e-06 27.2 0.0 4.2 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|219852366|ref|YP_002466798.1| - 2e-20 72.3 0.9 9.6e-08 31.9 0.0 4.5 5 0 0 5 5 5 3 PAS domain PAS_9 PF13426.7 gi|219852366|ref|YP_002466798.1| - 1.7e-19 70.0 0.0 1.8e-05 24.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|219852366|ref|YP_002466798.1| - 2e-19 69.9 0.0 9.4e-07 29.1 0.0 3.8 3 0 0 3 3 3 3 PAS fold DUF848 PF05852.11 gi|219852366|ref|YP_002466798.1| - 0.00018 21.7 0.1 0.06 13.5 0.0 2.8 2 0 0 2 2 2 1 Gammaherpesvirus protein of unknown function (DUF848) MLTR_LBD PF17765.1 gi|219852366|ref|YP_002466798.1| - 0.0028 17.8 0.1 5 7.2 0.0 3.6 3 0 0 3 3 3 1 MmyB-like transcription regulator ligand binding domain HAMP PF00672.25 gi|219852366|ref|YP_002466798.1| - 0.0034 17.7 0.0 0.0094 16.3 0.0 1.8 1 0 0 1 1 1 1 HAMP domain PAS_3 PF08447.12 gi|219852366|ref|YP_002466798.1| - 0.0037 17.5 0.0 4.4 7.7 0.0 3.3 3 0 0 3 3 3 2 PAS fold MCPsignal PF00015.21 gi|219852367|ref|YP_002466799.1| - 6.9e-47 159.5 43.9 1.4e-44 152.0 19.4 4.9 1 1 3 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219852367|ref|YP_002466799.1| - 1.7e-22 79.8 0.0 1.7e-07 31.5 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|219852367|ref|YP_002466799.1| - 2e-16 60.0 0.4 1.8e-05 24.7 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|219852367|ref|YP_002466799.1| - 3.8e-16 59.2 0.4 1.4e-07 31.7 0.1 4.1 3 0 0 3 3 3 3 PAS domain CHIPS PF11434.8 gi|219852367|ref|YP_002466799.1| - 5.5e-14 51.8 0.6 0.074 12.9 0.0 5.6 5 0 0 5 5 5 4 Chemotaxis-inhibiting protein CHIPS PAS_8 PF13188.7 gi|219852367|ref|YP_002466799.1| - 2.1e-06 27.6 0.0 0.014 15.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain CcdA PF07362.12 gi|219852367|ref|YP_002466799.1| - 1e-05 25.9 4.6 6.9 7.2 0.0 6.1 6 0 0 6 6 5 2 Post-segregation antitoxin CcdA PAS_7 PF12860.7 gi|219852367|ref|YP_002466799.1| - 0.0012 19.0 6.4 12 6.1 0.0 6.0 5 2 0 5 5 5 0 PAS fold DUF4853 PF16145.5 gi|219852367|ref|YP_002466799.1| - 0.0085 16.2 0.0 2 8.5 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4853) ubiquitin PF00240.23 gi|219852367|ref|YP_002466799.1| - 0.013 15.2 3.6 0.051 13.3 0.2 3.6 4 0 0 4 4 4 0 Ubiquitin family MLTR_LBD PF17765.1 gi|219852367|ref|YP_002466799.1| - 0.014 15.5 0.0 34 4.5 0.0 4.3 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain Rib PF08428.10 gi|219852367|ref|YP_002466799.1| - 0.028 14.4 7.1 28 4.8 0.1 4.6 4 0 0 4 4 4 0 Rib/alpha-like repeat DUF948 PF06103.11 gi|219852367|ref|YP_002466799.1| - 0.029 14.6 0.5 0.029 14.6 0.5 5.7 4 2 2 6 6 5 0 Bacterial protein of unknown function (DUF948) SapC PF07277.11 gi|219852367|ref|YP_002466799.1| - 0.057 13.0 1.4 0.13 11.8 0.1 2.3 2 0 0 2 2 2 0 SapC PDGLE PF13190.6 gi|219852367|ref|YP_002466799.1| - 0.14 12.0 5.5 31 4.6 0.0 4.6 5 0 0 5 5 5 0 PDGLE domain Spc7 PF08317.11 gi|219852367|ref|YP_002466799.1| - 2.8 6.7 28.4 0.056 12.3 7.3 4.3 3 1 1 4 4 4 0 Spc7 kinetochore protein DUF489 PF04356.12 gi|219852367|ref|YP_002466799.1| - 3.1 7.8 9.1 0.095 12.7 0.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF489) AAA_31 PF13614.6 gi|219852368|ref|YP_002466800.1| - 4.4e-46 157.0 0.0 6.3e-46 156.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|219852368|ref|YP_002466800.1| - 4.4e-18 65.6 0.0 1.6e-16 60.6 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|219852368|ref|YP_002466800.1| - 8.6e-13 48.3 0.1 1.7e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|219852368|ref|YP_002466800.1| - 1.4e-10 41.1 2.1 0.00067 19.2 0.1 3.1 3 0 0 3 3 3 3 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|219852368|ref|YP_002466800.1| - 2.7e-08 33.4 0.3 1.8e-05 24.2 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|219852368|ref|YP_002466800.1| - 7.1e-07 28.9 0.0 7.5e-06 25.6 0.0 2.5 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|219852368|ref|YP_002466800.1| - 3e-06 26.7 0.5 0.0002 20.7 0.2 2.2 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 gi|219852368|ref|YP_002466800.1| - 0.0001 21.6 0.7 0.00038 19.7 0.3 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase CLP1_P PF16575.5 gi|219852368|ref|YP_002466800.1| - 0.00056 19.8 0.1 0.0014 18.4 0.1 1.6 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_6 PF12774.7 gi|219852368|ref|YP_002466800.1| - 0.0073 15.3 0.4 0.46 9.4 0.0 2.1 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region SRP54 PF00448.22 gi|219852368|ref|YP_002466800.1| - 0.012 15.3 0.1 0.036 13.7 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|219852368|ref|YP_002466800.1| - 0.038 13.0 0.0 0.038 13.0 0.0 2.1 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|219852368|ref|YP_002466800.1| - 0.062 13.0 0.6 0.35 10.6 0.0 2.3 3 1 0 3 3 3 0 AAA domain Response_reg PF00072.24 gi|219852369|ref|YP_002466801.1| - 1.7e-18 66.8 0.0 2.2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_31 PF13847.6 gi|219852369|ref|YP_002466801.1| - 0.069 12.9 0.0 0.089 12.6 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain UPF0180 PF03698.13 gi|219852369|ref|YP_002466801.1| - 0.14 12.4 0.0 0.36 11.0 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) MCPsignal PF00015.21 gi|219852370|ref|YP_002466802.1| - 2.3e-44 151.3 41.6 3.6e-42 144.1 19.6 3.8 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Response_reg PF00072.24 gi|219852370|ref|YP_002466802.1| - 1.7e-15 57.2 0.2 7.6e-15 55.1 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|219852370|ref|YP_002466802.1| - 9.8e-12 44.9 0.0 7.2e-05 22.8 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852370|ref|YP_002466802.1| - 7.9e-11 42.1 0.0 0.00018 21.7 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|219852370|ref|YP_002466802.1| - 8e-11 42.2 0.0 4.2e-06 27.0 0.0 3.4 3 0 0 3 3 2 2 PAS fold PAS_8 PF13188.7 gi|219852370|ref|YP_002466802.1| - 3.4e-10 39.7 0.0 5.7e-05 23.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain DUF948 PF06103.11 gi|219852370|ref|YP_002466802.1| - 1.7e-08 34.6 27.6 3.8e-05 23.9 3.2 6.0 4 2 1 5 5 5 3 Bacterial protein of unknown function (DUF948) Mce4_CUP1 PF11887.8 gi|219852370|ref|YP_002466802.1| - 0.00051 19.6 5.0 0.002 17.6 0.8 2.4 2 0 0 2 2 2 1 Cholesterol uptake porter CUP1 of Mce4, putative HAMP PF00672.25 gi|219852370|ref|YP_002466802.1| - 0.0018 18.6 4.3 0.086 13.2 0.0 4.2 2 1 2 4 4 3 1 HAMP domain OpuAC PF04069.12 gi|219852370|ref|YP_002466802.1| - 0.015 14.9 0.3 0.061 12.9 0.0 2.2 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system DUF1664 PF07889.12 gi|219852370|ref|YP_002466802.1| - 0.019 15.0 20.3 0.47 10.5 0.8 4.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1664) Acetyltransf_11 PF13720.6 gi|219852370|ref|YP_002466802.1| - 0.086 13.3 5.8 5.9 7.4 0.0 4.5 5 0 0 5 5 4 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PilJ PF13675.6 gi|219852370|ref|YP_002466802.1| - 0.095 12.7 0.3 0.095 12.7 0.3 3.7 2 2 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2347 PF09804.9 gi|219852370|ref|YP_002466802.1| - 0.1 12.1 0.8 0.29 10.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2347) Par3_HAL_N_term PF12053.8 gi|219852370|ref|YP_002466802.1| - 0.14 12.3 1.2 34 4.7 0.0 3.6 4 0 0 4 4 3 0 N-terminal of Par3 and HAL proteins Laminin_II PF06009.12 gi|219852370|ref|YP_002466802.1| - 0.46 10.5 30.6 0.061 13.3 1.9 5.2 5 1 1 6 6 6 0 Laminin Domain II BLOC1_2 PF10046.9 gi|219852370|ref|YP_002466802.1| - 2.5 8.5 31.9 0.9 9.9 0.5 6.3 5 2 2 7 7 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad4 PF08650.10 gi|219852370|ref|YP_002466802.1| - 2.6 8.1 15.1 38 4.3 0.0 5.8 5 1 1 6 6 6 0 DASH complex subunit Dad4 NPV_P10 PF05531.12 gi|219852370|ref|YP_002466802.1| - 4.6 7.8 18.1 8.7 6.9 0.5 5.1 4 1 0 4 4 4 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|219852370|ref|YP_002466802.1| - 4.6 7.4 25.0 0.7 10.1 2.1 4.4 4 1 1 5 5 5 0 Fibrinogen alpha/beta chain family Cauli_AT PF03233.13 gi|219852370|ref|YP_002466802.1| - 9.5 6.1 9.5 2 8.3 0.0 4.0 3 1 1 4 4 4 0 Aphid transmission protein Response_reg PF00072.24 gi|219852371|ref|YP_002466803.1| - 5.8e-25 87.6 0.2 1.2e-24 86.7 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219852371|ref|YP_002466803.1| - 1.7e-19 70.4 0.0 3.2e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|219852371|ref|YP_002466803.1| - 1.7e-10 40.8 0.1 3.4e-10 39.8 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|219852371|ref|YP_002466803.1| - 0.022 14.6 0.0 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 gi|219852371|ref|YP_002466803.1| - 0.04 13.7 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|219852371|ref|YP_002466803.1| - 0.095 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CheW PF01584.19 gi|219852372|ref|YP_002466804.1| - 2.4e-27 95.3 0.8 2.7e-27 95.1 0.8 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 gi|219852373|ref|YP_002466805.1| - 1.1e-41 142.5 52.3 1.7e-40 138.6 21.4 5.4 3 1 4 7 7 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219852373|ref|YP_002466805.1| - 1.3e-19 70.4 0.0 1.3e-13 51.2 0.0 3.8 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|219852373|ref|YP_002466805.1| - 8.5e-12 45.3 0.0 6.3e-10 39.3 0.0 3.1 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 gi|219852373|ref|YP_002466805.1| - 6.3e-11 42.3 0.0 1.4e-06 28.3 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|219852373|ref|YP_002466805.1| - 9e-05 22.4 0.0 0.008 16.2 0.0 2.6 2 0 0 2 2 2 1 PAS domain MnmE_helical PF12631.7 gi|219852373|ref|YP_002466805.1| - 0.00034 20.8 1.4 0.00034 20.8 1.4 4.0 4 2 0 4 4 4 1 MnmE helical domain DUF948 PF06103.11 gi|219852373|ref|YP_002466805.1| - 0.0033 17.6 35.2 0.66 10.3 5.0 7.6 4 3 2 6 6 6 3 Bacterial protein of unknown function (DUF948) MLTR_LBD PF17765.1 gi|219852373|ref|YP_002466805.1| - 0.013 15.6 0.2 1 9.5 0.0 3.6 4 1 1 5 5 5 0 MmyB-like transcription regulator ligand binding domain Sigma70_ner PF04546.13 gi|219852373|ref|YP_002466805.1| - 0.067 13.1 9.7 0.18 11.7 0.5 2.7 2 0 0 2 2 2 0 Sigma-70, non-essential region DUF3659 PF12396.8 gi|219852373|ref|YP_002466805.1| - 0.067 13.1 0.3 14 5.7 0.0 3.7 3 0 0 3 3 2 0 Protein of unknown function (DUF3659) Ferritin PF00210.24 gi|219852373|ref|YP_002466805.1| - 0.15 12.0 2.9 0.27 11.2 0.4 2.7 2 0 0 2 2 2 0 Ferritin-like domain BLOC1_2 PF10046.9 gi|219852373|ref|YP_002466805.1| - 0.32 11.3 16.0 17 5.8 0.1 5.8 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1351 PF07083.11 gi|219852373|ref|YP_002466805.1| - 0.52 10.0 3.9 0.45 10.2 0.2 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF1351) Serine_rich PF08824.10 gi|219852373|ref|YP_002466805.1| - 0.69 9.9 6.6 2.3 8.2 0.7 3.7 1 1 3 4 4 4 0 Serine rich protein interaction domain Goodbye PF17109.5 gi|219852373|ref|YP_002466805.1| - 2.4 8.6 7.8 39 4.7 0.3 4.3 3 1 0 3 3 3 0 fungal STAND N-terminal Goodbye domain DASH_Dad4 PF08650.10 gi|219852373|ref|YP_002466805.1| - 2.8 8.0 10.8 2.3 8.2 0.0 4.6 5 0 0 5 5 4 0 DASH complex subunit Dad4 Spc7 PF08317.11 gi|219852373|ref|YP_002466805.1| - 7.6 5.3 11.3 5.7 5.7 0.5 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein Tweety PF04906.13 gi|219852373|ref|YP_002466805.1| - 8.1 5.0 9.1 1.4 7.5 0.9 2.8 3 0 0 3 3 3 0 Tweety Baculo_PEP_C PF04513.12 gi|219852373|ref|YP_002466805.1| - 8.3 6.5 25.5 1.7 8.7 0.5 5.3 2 1 5 7 7 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|219852373|ref|YP_002466805.1| - 9.6 6.2 30.0 3 7.9 4.5 5.8 4 2 1 6 6 6 0 Laminin Domain II Syntaxin-6_N PF09177.11 gi|219852373|ref|YP_002466805.1| - 10 6.8 11.5 15 6.2 3.9 3.7 2 2 2 4 4 4 0 Syntaxin 6, N-terminal PAS_9 PF13426.7 gi|219852374|ref|YP_002466806.1| - 1.3e-21 76.8 0.4 3.9e-11 43.1 0.1 3.5 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|219852374|ref|YP_002466806.1| - 2.3e-19 69.7 0.0 5.1e-11 42.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|219852374|ref|YP_002466806.1| - 6.2e-15 55.2 0.2 5.9e-07 29.5 0.1 3.0 2 1 0 2 2 2 2 PAS fold HisKA_2 PF07568.12 gi|219852374|ref|YP_002466806.1| - 4.5e-12 45.9 3.9 4.8e-12 45.8 0.1 2.9 3 1 1 4 4 4 1 Histidine kinase PAS_3 PF08447.12 gi|219852374|ref|YP_002466806.1| - 8.4e-08 32.4 0.0 4.8e-06 26.8 0.0 2.8 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|219852374|ref|YP_002466806.1| - 1e-06 29.2 0.0 6.2e-06 26.7 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|219852374|ref|YP_002466806.1| - 1.4e-06 28.1 0.0 0.072 13.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain HTH_24 PF13412.6 gi|219852374|ref|YP_002466806.1| - 0.00038 19.9 0.1 0.0015 18.1 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sec2p PF06428.11 gi|219852374|ref|YP_002466806.1| - 0.0017 18.3 0.2 0.0053 16.7 0.2 1.8 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p HTH_IclR PF09339.10 gi|219852374|ref|YP_002466806.1| - 0.0035 17.1 0.0 0.0072 16.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HATPase_c_2 PF13581.6 gi|219852374|ref|YP_002466806.1| - 0.013 15.4 0.0 0.036 14.0 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|219852374|ref|YP_002466806.1| - 0.015 15.5 1.0 5.8 7.1 0.0 3.7 2 2 0 2 2 2 0 PAS fold DUF507 PF04368.13 gi|219852374|ref|YP_002466806.1| - 0.033 14.1 3.7 0.13 12.2 1.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF507) HTH_23 PF13384.6 gi|219852374|ref|YP_002466806.1| - 0.081 12.7 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain BAR_3 PF16746.5 gi|219852374|ref|YP_002466806.1| - 0.094 12.4 0.4 0.21 11.2 0.4 1.6 1 0 0 1 1 1 0 BAR domain of APPL family MtrB PF05440.12 gi|219852374|ref|YP_002466806.1| - 0.11 12.9 0.0 17 5.9 0.0 3.4 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B Adenine_deam_C PF13382.6 gi|219852376|ref|YP_002466808.1| - 1e-48 164.9 0.0 1.6e-48 164.2 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|219852376|ref|YP_002466808.1| - 1.1e-21 77.6 0.0 9.7e-21 74.4 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|219852376|ref|YP_002466808.1| - 5.8e-11 42.5 1.0 2.2e-05 24.1 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family Methyltransf_25 PF13649.6 gi|219852377|ref|YP_002466809.1| - 2.1e-18 66.8 0.1 3.1e-18 66.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852377|ref|YP_002466809.1| - 5.2e-18 65.5 0.1 7.6e-18 65.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852377|ref|YP_002466809.1| - 4.6e-14 52.6 0.0 5.6e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852377|ref|YP_002466809.1| - 2.4e-11 44.2 0.1 3.5e-11 43.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852377|ref|YP_002466809.1| - 1.7e-08 34.4 0.0 2e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852377|ref|YP_002466809.1| - 4.6e-05 22.9 0.0 6.1e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|219852377|ref|YP_002466809.1| - 0.00022 20.9 0.0 0.00033 20.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|219852377|ref|YP_002466809.1| - 0.00027 20.7 0.0 0.0004 20.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 gi|219852377|ref|YP_002466809.1| - 0.00055 19.3 0.0 0.00068 19.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|219852377|ref|YP_002466809.1| - 0.00087 18.8 0.0 0.0012 18.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|219852377|ref|YP_002466809.1| - 0.0024 17.5 0.0 0.0033 17.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|219852377|ref|YP_002466809.1| - 0.0071 15.0 0.1 0.0083 14.7 0.1 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|219852377|ref|YP_002466809.1| - 0.019 13.9 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 gi|219852377|ref|YP_002466809.1| - 0.019 14.5 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|219852377|ref|YP_002466809.1| - 0.13 11.6 0.1 0.17 11.2 0.1 1.1 1 0 0 1 1 1 0 O-methyltransferase domain UPF0146 PF03686.13 gi|219852377|ref|YP_002466809.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) AAA_32 PF13654.6 gi|219852378|ref|YP_002466810.1| - 0.0025 16.7 0.0 0.0029 16.5 0.0 1.0 1 0 0 1 1 1 1 AAA domain MFS_1 PF07690.16 gi|219852379|ref|YP_002466811.1| - 2.9e-53 181.1 43.1 2.9e-53 181.1 43.1 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF4381 PF14316.6 gi|219852379|ref|YP_002466811.1| - 0.98 9.7 2.2 38 4.5 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4381) TPR_1 PF00515.28 gi|219852380|ref|YP_002466812.1| - 1.3e-60 198.9 18.9 1.3e-08 34.2 0.0 11.2 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219852380|ref|YP_002466812.1| - 7.7e-58 188.0 24.3 7.9e-07 28.7 1.2 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219852380|ref|YP_002466812.1| - 1.5e-40 134.0 6.1 3.2e-05 23.8 0.2 11.1 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219852380|ref|YP_002466812.1| - 4.2e-39 132.9 9.5 7.6e-10 39.3 3.5 7.2 3 2 5 8 8 8 8 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219852380|ref|YP_002466812.1| - 7.8e-36 122.4 10.0 5.4e-07 30.0 0.2 6.3 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219852380|ref|YP_002466812.1| - 2.4e-34 115.1 20.9 3.3e-05 24.3 0.7 10.4 2 2 9 11 11 11 9 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219852380|ref|YP_002466812.1| - 2e-29 101.0 11.1 1.4e-05 24.7 2.5 8.9 5 4 4 9 9 9 6 TPR repeat TPR_6 PF13174.6 gi|219852380|ref|YP_002466812.1| - 2.7e-26 90.4 6.3 0.025 15.2 0.3 10.9 11 0 0 11 11 11 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219852380|ref|YP_002466812.1| - 3.9e-24 84.7 16.2 6.1e-08 32.8 0.2 5.1 3 1 2 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|219852380|ref|YP_002466812.1| - 6.6e-24 83.9 22.9 5.8e-05 23.1 1.4 7.6 2 1 7 9 9 9 8 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219852380|ref|YP_002466812.1| - 6.6e-23 79.4 11.4 0.0091 16.3 0.1 9.3 10 0 0 10 10 9 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219852380|ref|YP_002466812.1| - 1.4e-22 79.8 26.9 1.8e-06 28.1 1.7 9.1 1 1 8 9 9 9 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219852380|ref|YP_002466812.1| - 6e-15 54.1 21.6 0.039 14.0 0.8 9.8 10 0 0 10 10 10 4 Tetratricopeptide repeat BTAD PF03704.17 gi|219852380|ref|YP_002466812.1| - 2.5e-11 44.2 19.3 0.0043 17.5 0.2 4.9 4 1 1 5 5 5 4 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|219852380|ref|YP_002466812.1| - 1.2e-07 31.0 0.1 0.19 10.6 0.0 4.6 1 1 2 5 5 5 2 NMDA receptor-regulated protein 1 TPR_5 PF12688.7 gi|219852380|ref|YP_002466812.1| - 2.8e-06 27.6 0.1 0.11 12.8 0.0 3.9 2 1 2 4 4 4 2 Tetratrico peptide repeat TPR_15 PF13429.6 gi|219852380|ref|YP_002466812.1| - 3e-06 26.6 0.2 0.44 9.7 0.2 5.2 2 1 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|219852380|ref|YP_002466812.1| - 5.2e-06 26.4 10.8 0.0064 16.5 0.0 6.6 9 0 0 9 9 7 1 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|219852380|ref|YP_002466812.1| - 5.6e-06 26.4 0.1 0.11 12.5 0.0 4.2 2 2 2 4 4 4 1 Putative TPR-like repeat PPR PF01535.20 gi|219852380|ref|YP_002466812.1| - 6.7e-06 26.0 11.9 13 6.3 0.1 9.2 10 0 0 10 10 9 0 PPR repeat HrpB1_HrpK PF09613.10 gi|219852380|ref|YP_002466812.1| - 6.2e-05 22.6 2.8 0.077 12.6 0.1 3.9 2 1 3 5 5 5 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_3 PF07720.12 gi|219852380|ref|YP_002466812.1| - 0.00043 20.2 4.7 0.00053 19.9 1.1 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|219852380|ref|YP_002466812.1| - 0.0014 18.9 1.8 16 5.9 0.1 5.1 4 2 3 7 7 6 0 Tetratricopeptide repeat DUF627 PF04781.12 gi|219852380|ref|YP_002466812.1| - 0.0016 18.5 0.1 2.5 8.2 0.0 4.0 4 0 0 4 4 4 1 Protein of unknown function (DUF627) TPR_4 PF07721.14 gi|219852380|ref|YP_002466812.1| - 0.0019 18.7 22.7 0.54 11.0 0.4 7.3 8 0 0 8 8 6 2 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|219852380|ref|YP_002466812.1| - 0.0021 18.5 0.5 39 4.7 0.0 4.4 2 1 3 5 5 5 0 Alkyl sulfatase dimerisation TPR_10 PF13374.6 gi|219852380|ref|YP_002466812.1| - 0.0039 17.0 19.7 0.047 13.6 1.3 7.4 9 0 0 9 9 8 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|219852380|ref|YP_002466812.1| - 0.0067 16.5 6.1 1.7 8.7 0.6 5.8 3 3 5 8 8 8 1 Domain of Unknown Function (DUF3856) FAT PF02259.23 gi|219852380|ref|YP_002466812.1| - 0.0079 15.5 0.2 0.031 13.5 0.0 1.9 2 0 0 2 2 2 1 FAT domain PknG_TPR PF16918.5 gi|219852380|ref|YP_002466812.1| - 0.019 13.7 4.4 0.34 9.6 0.3 3.6 2 1 3 5 5 5 0 Protein kinase G tetratricopeptide repeat DUF3808 PF10300.9 gi|219852380|ref|YP_002466812.1| - 0.074 11.8 0.5 21 3.7 0.0 3.0 2 1 0 3 3 3 0 Protein of unknown function (DUF3808) MIT PF04212.18 gi|219852380|ref|YP_002466812.1| - 0.18 11.9 15.7 1.5 8.9 0.4 6.3 7 0 0 7 7 6 0 MIT (microtubule interacting and transport) domain Coatomer_E PF04733.14 gi|219852380|ref|YP_002466812.1| - 0.19 11.1 0.7 8.7 5.7 0.1 2.9 3 1 0 3 3 3 0 Coatomer epsilon subunit RPN7 PF10602.9 gi|219852380|ref|YP_002466812.1| - 0.26 11.0 4.9 79 2.9 0.3 5.4 4 2 2 7 7 6 0 26S proteasome subunit RPN7 Type_III_YscG PF09477.10 gi|219852380|ref|YP_002466812.1| - 0.63 10.1 2.9 9.2 6.4 0.1 3.6 2 2 2 5 5 4 0 Bacterial type II secretion system chaperone protein (type_III_yscG) SNAP PF14938.6 gi|219852380|ref|YP_002466812.1| - 5.9 6.2 7.1 9.2 5.6 1.0 3.4 3 1 0 4 4 3 0 Soluble NSF attachment protein, SNAP PKD PF00801.20 gi|219852381|ref|YP_002466813.1| - 1.4e-123 402.8 152.4 7.2e-15 54.6 5.8 14.2 12 1 0 12 12 12 12 PKD domain SBBP PF06739.11 gi|219852381|ref|YP_002466813.1| - 9.7e-30 102.3 61.5 9e-07 28.8 0.8 8.7 7 0 0 7 7 7 6 Beta-propeller repeat CBM_6 PF03422.15 gi|219852381|ref|YP_002466813.1| - 1.6e-22 80.2 0.3 1.6e-22 80.2 0.3 12.9 10 5 4 14 14 14 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852381|ref|YP_002466813.1| - 5.1e-10 39.5 0.1 5.1e-10 39.5 0.1 4.2 4 0 0 4 4 4 1 DUF5010 C-terminal domain PKD_3 PF16820.5 gi|219852381|ref|YP_002466813.1| - 0.00025 20.7 53.6 0.38 10.5 0.2 12.2 13 0 0 13 13 13 5 PKD-like domain MG2 PF01835.19 gi|219852381|ref|YP_002466813.1| - 0.0068 16.8 41.8 8.6 6.9 0.1 10.8 7 4 2 11 11 11 2 MG2 domain DUF5122 PF17164.4 gi|219852381|ref|YP_002466813.1| - 0.05 13.9 4.6 16 5.9 0.0 6.1 4 0 0 4 4 4 0 Domain of unknown function (DUF5122) beta-propeller PKD PF00801.20 gi|219852382|ref|YP_002466814.1| - 3.9e-84 276.5 145.3 6.3e-13 48.4 5.9 11.8 14 0 0 14 14 14 9 PKD domain CBM_6 PF03422.15 gi|219852382|ref|YP_002466814.1| - 4e-25 88.5 0.7 4e-25 88.5 0.7 9.9 8 3 4 12 12 12 1 Carbohydrate binding module (family 6) NosD PF05048.13 gi|219852382|ref|YP_002466814.1| - 1.4e-18 67.1 12.1 1.4e-18 67.1 12.1 2.8 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) DUF5010_C PF18099.1 gi|219852382|ref|YP_002466814.1| - 5.5e-10 39.4 0.2 5.5e-10 39.4 0.2 4.3 4 0 0 4 4 4 1 DUF5010 C-terminal domain PKD_3 PF16820.5 gi|219852382|ref|YP_002466814.1| - 0.026 14.2 39.6 2.3 8.0 0.3 9.6 10 0 0 10 10 10 0 PKD-like domain MG2 PF01835.19 gi|219852382|ref|YP_002466814.1| - 0.049 14.1 34.3 5.9 7.4 0.1 8.4 7 2 2 9 9 9 0 MG2 domain DUF1217 PF06748.12 gi|219852382|ref|YP_002466814.1| - 0.5 10.4 6.3 60 3.6 0.0 4.5 5 0 0 5 5 5 0 Protein of unknown function (DUF1217) DUF4625 PF15418.6 gi|219852382|ref|YP_002466814.1| - 3.7 7.8 21.7 12 6.1 0.2 7.5 9 0 0 9 9 9 0 Domain of unknown function (DUF4625) ParE_toxin PF05016.15 gi|219852384|ref|YP_002466816.1| - 1.7e-05 25.3 1.1 2.2e-05 25.0 1.1 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE NTP_transf_2 PF01909.23 gi|219852386|ref|YP_002466818.1| - 6.4e-11 42.4 0.0 7.3e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|219852386|ref|YP_002466818.1| - 3.1e-10 40.0 0.0 3.6e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|219852386|ref|YP_002466818.1| - 0.042 13.7 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MHCassoc_trimer PF08831.10 gi|219852386|ref|YP_002466818.1| - 0.13 12.3 0.1 0.28 11.2 0.0 1.5 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain Polbeta PF18765.1 gi|219852387|ref|YP_002466819.1| - 4e-11 42.8 0.0 5.1e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|219852387|ref|YP_002466819.1| - 9.3e-11 41.9 0.0 1.2e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|219852388|ref|YP_002466820.1| - 0.00093 19.1 0.2 0.0014 18.4 0.1 1.4 2 0 0 2 2 2 1 Protein of unknown function DUF86 UBA_2 PF08587.11 gi|219852388|ref|YP_002466820.1| - 0.14 12.3 0.0 0.42 10.8 0.0 1.8 2 0 0 2 2 2 0 Ubiquitin associated domain (UBA) FeS PF04060.13 gi|219852389|ref|YP_002466821.1| - 1.4e-08 34.3 1.0 2.6e-08 33.4 1.0 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|219852390|ref|YP_002466822.1| - 2.8e-13 49.9 0.0 4e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|219852390|ref|YP_002466822.1| - 9.4e-05 22.9 0.1 0.00022 21.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|219852390|ref|YP_002466822.1| - 0.0039 16.7 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|219852390|ref|YP_002466822.1| - 0.011 15.0 0.0 0.02 14.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Peptidase_M17 PF00883.21 gi|219852390|ref|YP_002466822.1| - 0.012 14.9 0.1 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain AAA_22 PF13401.6 gi|219852390|ref|YP_002466822.1| - 0.025 14.9 0.0 0.04 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|219852390|ref|YP_002466822.1| - 0.027 14.6 0.0 0.05 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|219852390|ref|YP_002466822.1| - 0.028 13.8 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PduV-EutP PF10662.9 gi|219852390|ref|YP_002466822.1| - 0.074 12.8 0.0 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|219852390|ref|YP_002466822.1| - 0.1 13.0 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Hydin_ADK PF17213.3 gi|219852390|ref|YP_002466822.1| - 0.13 12.5 0.0 0.36 11.1 0.0 1.7 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Pox_A32 PF04665.12 gi|219852390|ref|YP_002466822.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_28 PF13521.6 gi|219852390|ref|YP_002466822.1| - 0.16 12.2 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|219852390|ref|YP_002466822.1| - 0.18 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|219852391|ref|YP_002466823.1| - 9.8e-15 55.3 0.0 1.4e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852391|ref|YP_002466823.1| - 3.2e-06 27.2 0.0 0.074 12.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852391|ref|YP_002466823.1| - 0.00032 20.2 0.3 0.0026 17.2 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|219852391|ref|YP_002466823.1| - 0.0005 20.3 0.0 0.0016 18.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|219852391|ref|YP_002466823.1| - 0.00078 19.9 0.0 0.0012 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|219852391|ref|YP_002466823.1| - 0.0028 17.4 0.0 0.0074 16.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|219852391|ref|YP_002466823.1| - 0.0057 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|219852391|ref|YP_002466823.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|219852391|ref|YP_002466823.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|219852391|ref|YP_002466823.1| - 0.06 12.4 0.0 0.085 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|219852391|ref|YP_002466823.1| - 0.061 12.5 0.0 0.93 8.6 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|219852391|ref|YP_002466823.1| - 0.066 13.7 0.1 0.099 13.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|219852391|ref|YP_002466823.1| - 0.081 13.0 0.1 0.19 11.9 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|219852391|ref|YP_002466823.1| - 0.092 12.6 0.0 1.4 8.8 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|219852391|ref|YP_002466823.1| - 0.094 13.0 0.2 3.3 7.9 0.0 2.5 1 1 1 2 2 2 0 AAA domain Dockerin_1 PF00404.18 gi|219852392|ref|YP_002466824.1| - 0.00016 21.8 0.4 0.00057 20.0 0.3 1.9 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|219852392|ref|YP_002466824.1| - 0.037 13.6 0.4 0.037 13.6 0.4 3.4 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.6 gi|219852392|ref|YP_002466824.1| - 0.049 13.6 7.7 0.099 12.6 0.2 3.6 2 1 1 3 3 3 0 EF-hand domain Lipoprotein_17 PF04200.12 gi|219852392|ref|YP_002466824.1| - 0.097 13.0 0.2 0.18 12.2 0.2 1.4 1 0 0 1 1 1 0 Lipoprotein associated domain PKD PF00801.20 gi|219852393|ref|YP_002466825.1| - 1.5e-20 72.8 24.7 2.1e-13 49.9 6.4 3.9 3 1 0 3 3 3 2 PKD domain Dockerin_1 PF00404.18 gi|219852393|ref|YP_002466825.1| - 0.0005 20.2 3.1 0.00062 19.9 1.3 2.1 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219852393|ref|YP_002466825.1| - 0.01 15.7 1.8 0.35 10.9 0.2 3.1 2 0 0 2 2 2 0 EF-hand domain PKD_3 PF16820.5 gi|219852393|ref|YP_002466825.1| - 0.014 15.2 2.4 0.79 9.5 0.3 3.0 2 0 0 2 2 2 0 PKD-like domain EF-hand_1 PF00036.32 gi|219852393|ref|YP_002466825.1| - 0.043 13.4 4.7 0.4 10.3 0.4 2.9 2 0 0 2 2 2 0 EF hand ICMT PF04140.14 gi|219852394|ref|YP_002466826.1| - 5.7e-18 65.1 0.4 2.1e-17 63.3 0.1 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 gi|219852394|ref|YP_002466826.1| - 1.8e-15 57.2 1.7 1.8e-15 57.2 1.7 1.8 3 0 0 3 3 3 1 Phospholipid methyltransferase Steroid_dh PF02544.16 gi|219852394|ref|YP_002466826.1| - 2.5e-05 24.3 0.6 3.5e-05 23.8 0.2 1.4 2 0 0 2 2 2 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1295 PF06966.12 gi|219852394|ref|YP_002466826.1| - 6e-05 22.7 0.1 8e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) Oxidored_q4 PF00507.19 gi|219852395|ref|YP_002466827.1| - 0.15 12.3 0.9 0.28 11.4 0.9 1.5 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KCT2 PF17818.1 gi|219852395|ref|YP_002466827.1| - 3.2 7.8 0.0 3.2 7.8 0.0 4.2 2 2 2 4 4 4 0 Keratinocyte-associated gene product DUF2207 PF09972.9 gi|219852396|ref|YP_002466828.1| - 0.13 11.0 0.2 0.3 9.8 0.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CPP1-like PF11833.8 gi|219852396|ref|YP_002466828.1| - 2 8.0 6.6 0.5 10.0 0.1 2.8 2 1 1 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like CbiQ PF02361.16 gi|219852397|ref|YP_002466829.1| - 8.2e-27 94.3 8.2 9.9e-27 94.0 8.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|219852398|ref|YP_002466830.1| - 9.3e-60 201.1 0.0 2.6e-29 102.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|219852398|ref|YP_002466830.1| - 6.9e-18 65.5 7.7 2.5e-06 27.5 0.3 4.1 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852398|ref|YP_002466830.1| - 2.1e-12 47.0 0.0 0.0014 18.2 0.0 3.1 3 0 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219852398|ref|YP_002466830.1| - 3.1e-12 46.1 0.1 0.00011 21.8 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852398|ref|YP_002466830.1| - 3.9e-12 46.9 0.3 2.4e-05 24.8 0.1 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|219852398|ref|YP_002466830.1| - 9.1e-10 39.4 0.1 0.0013 19.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|219852398|ref|YP_002466830.1| - 9.7e-10 38.6 0.6 8.2e-05 22.6 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_15 PF13175.6 gi|219852398|ref|YP_002466830.1| - 5.2e-08 33.0 0.0 0.00011 22.1 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|219852398|ref|YP_002466830.1| - 8.7e-08 32.1 0.1 0.01 15.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|219852398|ref|YP_002466830.1| - 2.1e-07 31.3 0.5 0.0046 17.2 0.2 2.6 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|219852398|ref|YP_002466830.1| - 7.3e-06 25.5 0.1 0.0039 16.6 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|219852398|ref|YP_002466830.1| - 8.1e-06 25.1 0.2 0.0025 16.9 0.1 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|219852398|ref|YP_002466830.1| - 1.1e-05 25.1 0.2 0.13 11.9 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|219852398|ref|YP_002466830.1| - 1.6e-05 25.1 0.2 0.17 12.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|219852398|ref|YP_002466830.1| - 1.9e-05 24.7 0.8 0.049 13.6 0.1 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|219852398|ref|YP_002466830.1| - 3.7e-05 23.7 1.9 0.13 12.2 0.1 2.8 3 0 0 3 3 3 2 NACHT domain AAA_18 PF13238.6 gi|219852398|ref|YP_002466830.1| - 3.8e-05 24.3 0.5 0.058 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|219852398|ref|YP_002466830.1| - 0.00012 22.1 0.0 0.089 12.7 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_27 PF13514.6 gi|219852398|ref|YP_002466830.1| - 0.0002 21.1 0.0 0.45 10.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain cobW PF02492.19 gi|219852398|ref|YP_002466830.1| - 0.00026 20.6 4.3 0.25 10.9 0.2 2.7 3 0 0 3 3 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|219852398|ref|YP_002466830.1| - 0.00029 21.1 2.9 0.51 10.6 0.1 2.5 2 0 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.23 gi|219852398|ref|YP_002466830.1| - 0.00038 20.5 0.1 0.88 9.7 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|219852398|ref|YP_002466830.1| - 0.00064 19.1 0.0 1.3 8.3 0.0 2.5 3 0 0 3 3 2 2 Zeta toxin CPT PF07931.12 gi|219852398|ref|YP_002466830.1| - 0.00067 19.5 0.8 0.1 12.4 0.1 2.7 3 0 0 3 3 2 1 Chloramphenicol phosphotransferase-like protein ATPase_2 PF01637.18 gi|219852398|ref|YP_002466830.1| - 0.00098 19.1 0.0 0.5 10.2 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|219852398|ref|YP_002466830.1| - 0.00099 18.9 0.0 0.033 13.9 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|219852398|ref|YP_002466830.1| - 0.0011 19.0 0.2 1.1 9.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|219852398|ref|YP_002466830.1| - 0.0013 17.6 1.3 0.41 9.4 0.0 2.5 3 0 0 3 3 2 2 Predicted ATPase of the ABC class VirE PF05272.11 gi|219852398|ref|YP_002466830.1| - 0.002 17.9 0.0 0.92 9.2 0.0 2.3 2 0 0 2 2 2 1 Virulence-associated protein E NTPase_1 PF03266.15 gi|219852398|ref|YP_002466830.1| - 0.003 17.5 1.2 0.12 12.3 0.2 2.7 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|219852398|ref|YP_002466830.1| - 0.0032 17.2 0.1 1.8 8.3 0.1 2.3 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.15 gi|219852398|ref|YP_002466830.1| - 0.0033 16.3 0.3 0.67 8.7 0.1 2.2 2 0 0 2 2 2 1 Adenovirus IVa2 protein FtsK_SpoIIIE PF01580.18 gi|219852398|ref|YP_002466830.1| - 0.0033 16.8 0.1 0.71 9.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family G-alpha PF00503.20 gi|219852398|ref|YP_002466830.1| - 0.0047 16.1 0.1 0.9 8.6 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit APS_kinase PF01583.20 gi|219852398|ref|YP_002466830.1| - 0.0061 16.5 0.6 0.48 10.3 0.1 2.9 2 1 1 3 3 3 1 Adenylylsulphate kinase AAA_19 PF13245.6 gi|219852398|ref|YP_002466830.1| - 0.012 15.9 0.5 1.4 9.3 0.1 2.8 3 1 0 3 3 2 0 AAA domain RNA_helicase PF00910.22 gi|219852398|ref|YP_002466830.1| - 0.014 15.8 0.1 3.2 8.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|219852398|ref|YP_002466830.1| - 0.017 14.7 0.1 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA PF00004.29 gi|219852398|ref|YP_002466830.1| - 0.019 15.4 0.2 9.1 6.7 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3584 PF12128.8 gi|219852398|ref|YP_002466830.1| - 0.024 12.2 0.1 0.042 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.22 gi|219852398|ref|YP_002466830.1| - 0.028 13.6 0.3 2.7 7.1 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain DUF815 PF05673.13 gi|219852398|ref|YP_002466830.1| - 0.029 13.6 0.1 7.5 5.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DAP3 PF10236.9 gi|219852398|ref|YP_002466830.1| - 0.031 13.4 0.4 2.8 7.0 0.1 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MukB PF04310.12 gi|219852398|ref|YP_002466830.1| - 0.037 13.8 0.3 0.79 9.5 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal TsaE PF02367.17 gi|219852398|ref|YP_002466830.1| - 0.046 13.7 0.0 3.1 7.8 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|219852398|ref|YP_002466830.1| - 0.062 11.9 0.0 0.45 9.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|219852398|ref|YP_002466830.1| - 0.064 13.0 1.7 4.1 7.2 0.2 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MutS_V PF00488.21 gi|219852398|ref|YP_002466830.1| - 0.067 13.2 0.9 4.9 7.1 0.1 2.7 2 0 0 2 2 2 0 MutS domain V ATP_bind_1 PF03029.17 gi|219852398|ref|YP_002466830.1| - 0.078 12.7 0.7 5.5 6.7 0.1 2.5 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein AAA_PrkA PF08298.11 gi|219852398|ref|YP_002466830.1| - 0.087 11.7 0.0 1.2 7.9 0.0 2.1 2 0 0 2 2 2 0 PrkA AAA domain KAP_NTPase PF07693.14 gi|219852398|ref|YP_002466830.1| - 0.09 12.0 0.0 12 5.1 0.0 2.3 2 0 0 2 2 2 0 KAP family P-loop domain SbcCD_C PF13558.6 gi|219852398|ref|YP_002466830.1| - 0.13 12.5 0.0 1.2 9.4 0.0 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit SRPRB PF09439.10 gi|219852398|ref|YP_002466830.1| - 0.15 11.5 0.3 4.5 6.7 0.1 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PIF1 PF05970.14 gi|219852398|ref|YP_002466830.1| - 0.17 11.0 0.0 2.6 7.1 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase PhoH PF02562.16 gi|219852398|ref|YP_002466830.1| - 0.17 11.3 0.0 5.7 6.3 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Roc PF08477.13 gi|219852398|ref|YP_002466830.1| - 0.19 12.0 0.7 25 5.1 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SRP54 PF00448.22 gi|219852398|ref|YP_002466830.1| - 0.23 11.1 0.7 6.7 6.3 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PRK PF00485.18 gi|219852398|ref|YP_002466830.1| - 0.33 10.6 0.9 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ABC_cobalt PF09819.9 gi|219852399|ref|YP_002466831.1| - 1.3e-09 38.3 3.5 1.3e-09 38.3 3.5 2.1 1 1 1 2 2 2 1 ABC-type cobalt transport system, permease component ECF-ribofla_trS PF07155.12 gi|219852399|ref|YP_002466831.1| - 0.0027 17.8 2.4 0.0027 17.8 2.4 2.7 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component DUF4010 PF13194.6 gi|219852402|ref|YP_002466834.1| - 0.00047 19.9 0.9 0.00047 19.9 0.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) DUF3180 PF11377.8 gi|219852402|ref|YP_002466834.1| - 0.051 13.7 0.2 0.11 12.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) DUF4381 PF14316.6 gi|219852402|ref|YP_002466834.1| - 0.1 12.9 1.5 0.23 11.7 0.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4381) stn_TNFRSF12A PF12191.8 gi|219852402|ref|YP_002466834.1| - 0.12 12.6 0.3 0.67 10.2 0.1 2.1 2 0 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain VWA_2 PF13519.6 gi|219852403|ref|YP_002466835.1| - 2.4e-22 79.6 0.4 1.1e-21 77.5 0.1 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|219852403|ref|YP_002466835.1| - 1.5e-20 74.2 0.1 1.9e-20 73.8 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain BatA PF07584.11 gi|219852403|ref|YP_002466835.1| - 8.8e-14 51.6 0.6 8.8e-14 51.6 0.6 2.1 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_3 PF13768.6 gi|219852403|ref|YP_002466835.1| - 4.5e-09 36.4 0.3 8.2e-08 32.3 0.3 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.11 gi|219852403|ref|YP_002466835.1| - 0.0014 17.9 1.0 0.03 13.5 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1194) VWA_CoxE PF05762.14 gi|219852403|ref|YP_002466835.1| - 0.0048 16.3 0.2 0.015 14.7 0.1 1.7 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein BRCT PF00533.26 gi|219852403|ref|YP_002466835.1| - 0.12 12.7 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain DUF4131 PF13567.6 gi|219852403|ref|YP_002466835.1| - 9.3 5.9 6.5 1.4 8.5 1.6 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF58 PF01882.18 gi|219852404|ref|YP_002466836.1| - 4.1e-22 78.3 0.0 7.7e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|219852404|ref|YP_002466836.1| - 5.3e-07 30.3 0.0 1.6e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|219852404|ref|YP_002466836.1| - 0.0003 20.3 0.0 0.00046 19.6 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_3 PF07726.11 gi|219852405|ref|YP_002466837.1| - 4.3e-65 217.5 0.0 7.5e-65 216.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|219852405|ref|YP_002466837.1| - 6e-19 67.7 0.1 1.3e-18 66.6 0.1 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|219852405|ref|YP_002466837.1| - 6.4e-13 48.9 0.0 1.5e-12 47.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|219852405|ref|YP_002466837.1| - 0.00013 21.4 0.3 0.0034 16.8 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|219852405|ref|YP_002466837.1| - 0.00051 19.2 0.0 0.0039 16.3 0.0 2.3 1 1 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|219852405|ref|YP_002466837.1| - 0.00052 20.5 0.0 0.00093 19.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|219852405|ref|YP_002466837.1| - 0.00061 19.5 0.0 0.0022 17.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|219852405|ref|YP_002466837.1| - 0.00089 19.0 0.1 0.0074 16.0 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|219852405|ref|YP_002466837.1| - 0.031 14.6 0.0 0.055 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain PKD PF00801.20 gi|219852407|ref|YP_002466839.1| - 1.6e-137 447.5 195.4 6.2e-13 48.4 5.8 17.1 16 1 0 16 16 16 14 PKD domain CBM_6 PF03422.15 gi|219852407|ref|YP_002466839.1| - 1.6e-22 80.1 0.4 1.6e-22 80.1 0.4 12.7 13 2 2 15 15 15 1 Carbohydrate binding module (family 6) SBBP PF06739.11 gi|219852407|ref|YP_002466839.1| - 3.8e-21 74.8 61.2 2.2e-06 27.6 7.8 10.5 8 0 0 8 8 8 7 Beta-propeller repeat NosD PF05048.13 gi|219852407|ref|YP_002466839.1| - 1.1e-18 67.5 13.8 1.1e-18 67.5 13.8 4.8 4 0 0 4 4 4 1 Periplasmic copper-binding protein (NosD) DUF5010_C PF18099.1 gi|219852407|ref|YP_002466839.1| - 3.1e-10 40.2 2.5 1e-09 38.5 0.1 3.3 2 0 0 2 2 2 1 DUF5010 C-terminal domain MG2 PF01835.19 gi|219852407|ref|YP_002466839.1| - 5.5e-05 23.5 50.8 1.9 9.0 0.2 12.8 11 2 2 13 13 13 2 MG2 domain DUF5122 PF17164.4 gi|219852407|ref|YP_002466839.1| - 0.36 11.2 8.4 6.4 7.2 0.0 6.1 4 0 0 4 4 4 0 Domain of unknown function (DUF5122) beta-propeller PKD_3 PF16820.5 gi|219852407|ref|YP_002466839.1| - 9.8 6.0 62.7 1.6 8.5 0.6 13.5 15 0 0 15 15 15 0 PKD-like domain Spin-Ssty PF02513.17 gi|219852408|ref|YP_002466840.1| - 0.033 13.9 0.1 1.5 8.6 0.0 2.5 2 0 0 2 2 2 0 Spin/Ssty Family PKD PF00801.20 gi|219852409|ref|YP_002466841.1| - 5e-10 39.1 6.1 2.2e-09 37.0 6.1 2.2 1 1 0 1 1 1 1 PKD domain Dockerin_1 PF00404.18 gi|219852409|ref|YP_002466841.1| - 0.00041 20.5 1.6 0.0011 19.1 1.6 1.8 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219852409|ref|YP_002466841.1| - 0.026 14.5 2.7 0.26 11.3 0.3 2.9 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|219852409|ref|YP_002466841.1| - 1.3 8.8 10.4 0.12 12.0 0.6 3.0 3 0 0 3 3 3 0 EF hand Atrophin-1 PF03154.15 gi|219852409|ref|YP_002466841.1| - 9.9 4.3 11.6 14 3.8 11.6 1.2 1 0 0 1 1 1 0 Atrophin-1 family DUF2207 PF09972.9 gi|219852410|ref|YP_002466842.1| - 2.3 6.9 5.2 0.25 10.1 0.5 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) TPR_2 PF07719.17 gi|219852413|ref|YP_002466845.1| - 5.6e-21 72.9 0.4 0.00014 21.7 0.0 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219852413|ref|YP_002466845.1| - 4.7e-19 67.3 0.4 0.00082 19.1 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219852413|ref|YP_002466845.1| - 3.6e-15 54.8 0.7 0.005 16.9 0.0 4.4 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219852413|ref|YP_002466845.1| - 2.4e-13 50.0 0.1 9.4e-07 28.9 0.2 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219852413|ref|YP_002466845.1| - 3.2e-13 49.3 1.5 0.01 16.6 0.0 4.6 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219852413|ref|YP_002466845.1| - 5.9e-13 48.2 0.1 0.0042 17.4 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219852413|ref|YP_002466845.1| - 6.7e-13 49.1 0.0 5.6e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219852413|ref|YP_002466845.1| - 3.4e-09 37.1 0.2 0.00095 19.6 0.0 2.7 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219852413|ref|YP_002466845.1| - 1e-08 34.7 0.3 0.0024 17.5 0.0 4.1 3 1 1 4 4 4 2 TPR repeat TPR_7 PF13176.6 gi|219852413|ref|YP_002466845.1| - 4.4e-08 32.6 1.2 0.026 14.5 0.0 4.8 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|219852413|ref|YP_002466845.1| - 1e-05 24.9 0.1 0.0027 17.0 0.1 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219852413|ref|YP_002466845.1| - 3.5e-05 24.0 2.2 0.72 10.2 0.3 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219852413|ref|YP_002466845.1| - 3.6e-05 23.9 0.2 0.2 11.9 0.0 2.2 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|219852413|ref|YP_002466845.1| - 0.00012 22.5 0.1 3.1 8.6 0.1 3.5 4 0 0 4 4 3 2 Tetratricopeptide repeat BTAD PF03704.17 gi|219852413|ref|YP_002466845.1| - 0.0065 16.9 0.5 0.15 12.5 0.0 2.3 1 1 0 2 2 2 1 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|219852413|ref|YP_002466845.1| - 0.011 14.7 0.0 0.089 11.7 0.0 1.9 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 Alkyl_sulf_dimr PF14863.6 gi|219852413|ref|YP_002466845.1| - 0.02 15.3 0.0 0.044 14.2 0.0 1.5 1 0 0 1 1 1 0 Alkyl sulfatase dimerisation TPR_4 PF07721.14 gi|219852413|ref|YP_002466845.1| - 0.041 14.5 1.3 88 4.2 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat MAS20 PF02064.15 gi|219852413|ref|YP_002466845.1| - 0.045 13.9 0.0 0.26 11.4 0.0 2.1 1 1 2 3 3 3 0 MAS20 protein import receptor MIT PF04212.18 gi|219852413|ref|YP_002466845.1| - 0.098 12.7 0.4 48 4.1 0.0 3.2 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain ChAPs PF09295.10 gi|219852413|ref|YP_002466845.1| - 0.13 11.2 0.0 0.24 10.3 0.0 1.4 1 1 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) SelR PF01641.18 gi|219852414|ref|YP_002466846.1| - 1.2e-51 173.8 0.2 1.4e-51 173.6 0.2 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|219852414|ref|YP_002466846.1| - 0.002 18.3 0.4 0.0038 17.4 0.4 1.5 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly VWA_N2 PF16164.5 gi|219852414|ref|YP_002466846.1| - 0.081 13.1 1.8 0.15 12.2 0.6 2.0 1 1 1 2 2 2 0 VWA N-terminal zinc_ribbon_10 PF10058.9 gi|219852414|ref|YP_002466846.1| - 0.14 11.9 0.1 0.14 11.9 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Ribosomal_L37e PF01907.19 gi|219852414|ref|YP_002466846.1| - 0.2 11.8 4.5 5.9 7.1 0.1 2.4 2 0 0 2 2 2 0 Ribosomal protein L37e HECT_2 PF09814.9 gi|219852414|ref|YP_002466846.1| - 0.24 10.2 0.1 0.24 10.2 0.1 1.7 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Jas PF16135.5 gi|219852414|ref|YP_002466846.1| - 0.6 10.3 5.8 1.7 8.9 1.7 2.3 1 1 1 2 2 2 0 TPL-binding domain in jasmonate signalling CHASE4 PF05228.13 gi|219852415|ref|YP_002466847.1| - 1.7e-31 109.2 0.1 4.6e-28 98.1 0.1 3.7 4 0 0 4 4 4 1 CHASE4 domain PAS_4 PF08448.10 gi|219852415|ref|YP_002466847.1| - 9.5e-27 93.4 0.1 4.9e-13 49.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|219852415|ref|YP_002466847.1| - 7.6e-24 83.9 0.3 6e-12 45.6 0.1 3.4 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|219852415|ref|YP_002466847.1| - 1.7e-23 82.9 0.1 3.5e-12 46.5 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|219852415|ref|YP_002466847.1| - 2e-19 70.1 0.1 4.4e-19 69.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|219852415|ref|YP_002466847.1| - 1.4e-13 51.0 0.0 3.9e-13 49.6 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|219852415|ref|YP_002466847.1| - 1.2e-11 44.4 0.1 0.0001 22.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|219852415|ref|YP_002466847.1| - 1.7e-06 28.2 0.0 1e-05 25.7 0.0 2.4 2 1 1 3 3 3 1 PAS fold HAMP PF00672.25 gi|219852415|ref|YP_002466847.1| - 3.7e-06 27.2 3.7 1.2e-05 25.6 1.8 2.4 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.25 gi|219852415|ref|YP_002466847.1| - 0.0055 16.7 0.2 0.021 14.9 0.2 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HPTransfase PF10090.9 gi|219852415|ref|YP_002466847.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.7 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain HATPase_c_2 PF13581.6 gi|219852415|ref|YP_002466847.1| - 0.057 13.4 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|219852415|ref|YP_002466847.1| - 0.091 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2703 PF10865.8 gi|219852416|ref|YP_002466848.1| - 5.4e-21 75.0 0.0 6e-21 74.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) Cohesin_HEAT PF12765.7 gi|219852416|ref|YP_002466848.1| - 0.018 15.3 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 HEAT repeat associated with sister chromatid cohesion DUF1624 PF07786.12 gi|219852417|ref|YP_002466849.1| - 1.4e-68 230.8 15.2 1.6e-68 230.6 15.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|219852417|ref|YP_002466849.1| - 2.6e-06 26.7 25.6 0.11 11.6 13.7 2.3 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.9 gi|219852417|ref|YP_002466849.1| - 8.2e-06 24.9 11.0 0.00052 19.0 8.4 2.7 2 1 0 2 2 2 2 OpgC protein UvrB_inter PF17757.1 gi|219852418|ref|YP_002466850.1| - 9.6e-29 99.4 1.8 4.6e-28 97.2 0.5 2.5 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|219852418|ref|YP_002466850.1| - 2.4e-21 75.3 0.8 6.3e-21 74.0 0.8 1.8 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|219852418|ref|YP_002466850.1| - 7.6e-17 61.7 0.3 2.2e-16 60.2 0.3 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|219852418|ref|YP_002466850.1| - 6.4e-13 49.1 0.1 2.6e-11 43.8 0.0 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|219852418|ref|YP_002466850.1| - 2.2e-07 30.4 5.1 2.8e-07 30.0 2.5 2.6 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.29 gi|219852418|ref|YP_002466850.1| - 4e-05 23.5 0.0 0.0043 16.8 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|219852418|ref|YP_002466850.1| - 0.0013 18.5 0.0 0.016 15.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|219852418|ref|YP_002466850.1| - 0.0056 17.0 1.6 4.6 7.6 0.1 3.1 3 1 0 3 3 3 2 AAA domain DUF1064 PF06356.11 gi|219852418|ref|YP_002466850.1| - 0.03 14.7 0.0 0.06 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1064) Kinesin PF00225.23 gi|219852418|ref|YP_002466850.1| - 0.067 12.1 0.1 0.15 10.9 0.0 1.5 2 0 0 2 2 2 0 Kinesin motor domain Flavi_DEAD PF07652.14 gi|219852418|ref|YP_002466850.1| - 0.08 12.9 0.1 0.38 10.7 0.1 2.1 2 0 0 2 2 2 0 Flavivirus DEAD domain CsgA PF17334.2 gi|219852418|ref|YP_002466850.1| - 0.086 13.6 0.4 0.28 11.9 0.4 1.9 1 0 0 1 1 1 0 Minor curli fiber component A UvrC_HhH_N PF08459.11 gi|219852419|ref|YP_002466851.1| - 8.3e-50 168.7 0.2 2.2e-49 167.3 0.0 1.8 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|219852419|ref|YP_002466851.1| - 3.1e-09 37.0 2.0 5.8e-09 36.1 0.0 2.5 4 0 0 4 4 4 1 GIY-YIG catalytic domain UVR PF02151.19 gi|219852419|ref|YP_002466851.1| - 2.1e-05 24.1 6.9 5.8e-05 22.7 6.9 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif UvrA_inter PF17760.1 gi|219852420|ref|YP_002466852.1| - 4.7e-30 103.9 0.9 2.5e-29 101.5 0.8 2.3 2 0 0 2 2 2 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|219852420|ref|YP_002466852.1| - 2.5e-27 95.4 0.0 3.7e-26 91.6 0.0 2.4 2 0 0 2 2 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|219852420|ref|YP_002466852.1| - 4.7e-20 72.5 0.2 9.3e-09 35.9 0.0 4.4 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|219852420|ref|YP_002466852.1| - 6.5e-11 42.1 0.1 0.016 14.7 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|219852420|ref|YP_002466852.1| - 6.5e-08 32.7 0.7 0.0079 16.0 0.0 4.2 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|219852420|ref|YP_002466852.1| - 1.9e-07 30.7 0.1 0.013 15.3 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852420|ref|YP_002466852.1| - 1.1e-06 29.2 0.1 0.073 13.5 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|219852420|ref|YP_002466852.1| - 2.1e-06 27.8 0.1 0.068 13.1 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|219852420|ref|YP_002466852.1| - 3e-06 27.0 0.0 0.038 13.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|219852420|ref|YP_002466852.1| - 4.1e-06 27.0 0.0 0.075 13.2 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|219852420|ref|YP_002466852.1| - 1.7e-05 25.1 0.3 0.41 10.9 0.0 3.8 4 0 0 4 4 3 2 AAA domain AAA_15 PF13175.6 gi|219852420|ref|YP_002466852.1| - 2.1e-05 24.4 0.3 4.6 6.9 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_23 PF13476.6 gi|219852420|ref|YP_002466852.1| - 2.3e-05 25.0 0.3 0.27 11.7 0.1 2.6 2 0 0 2 2 2 2 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|219852420|ref|YP_002466852.1| - 3.1e-05 24.2 3.4 0.022 15.1 0.3 3.4 3 0 0 3 3 3 1 DnaJ central domain APS_kinase PF01583.20 gi|219852420|ref|YP_002466852.1| - 5.1e-05 23.2 0.1 0.15 12.0 0.0 2.7 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_14 PF13173.6 gi|219852420|ref|YP_002466852.1| - 5.7e-05 23.1 0.0 0.12 12.4 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|219852420|ref|YP_002466852.1| - 0.00044 20.8 0.2 2.2 8.8 0.0 3.2 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.9 gi|219852420|ref|YP_002466852.1| - 0.0012 18.2 0.1 0.2 10.8 0.0 2.6 3 0 0 3 3 2 1 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|219852420|ref|YP_002466852.1| - 0.0016 17.6 0.1 1.6 7.7 0.1 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.12 gi|219852420|ref|YP_002466852.1| - 0.0017 18.3 0.1 0.21 11.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain cobW PF02492.19 gi|219852420|ref|YP_002466852.1| - 0.0018 17.9 1.0 0.22 11.1 0.2 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|219852420|ref|YP_002466852.1| - 0.0055 16.5 0.0 0.19 11.5 0.0 2.7 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|219852420|ref|YP_002466852.1| - 0.0061 16.9 0.1 1.6 9.1 0.0 2.9 3 0 0 3 3 2 1 RNA helicase ATPase PF06745.13 gi|219852420|ref|YP_002466852.1| - 0.0071 15.7 1.2 0.91 8.8 0.1 2.9 3 0 0 3 3 3 1 KaiC BCA_ABC_TP_C PF12399.8 gi|219852420|ref|YP_002466852.1| - 0.027 14.4 1.4 0.1 12.5 0.5 2.3 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_7 PF12775.7 gi|219852420|ref|YP_002466852.1| - 0.058 12.9 0.1 12 5.4 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|219852420|ref|YP_002466852.1| - 0.068 13.1 1.3 9.7 6.0 0.0 2.9 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|219852420|ref|YP_002466852.1| - 0.071 12.1 0.1 6.8 5.6 0.1 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|219852420|ref|YP_002466852.1| - 0.083 12.3 0.2 12 5.2 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 SbcCD_C PF13558.6 gi|219852420|ref|YP_002466852.1| - 0.09 13.0 0.1 23 5.3 0.0 3.4 3 0 0 3 3 3 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|219852420|ref|YP_002466852.1| - 0.1 12.3 0.4 8.7 6.0 0.1 3.1 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|219852420|ref|YP_002466852.1| - 0.11 12.8 0.3 9.6 6.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|219852420|ref|YP_002466852.1| - 0.11 12.5 0.1 18 5.4 0.0 3.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.22 gi|219852420|ref|YP_002466852.1| - 0.12 11.5 0.2 11 5.1 0.1 2.6 3 0 0 3 3 3 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|219852420|ref|YP_002466852.1| - 0.16 12.1 0.2 30 4.7 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|219852420|ref|YP_002466852.1| - 0.29 10.8 3.0 8.1 6.1 0.0 3.3 5 0 0 5 5 3 0 AAA domain Zn-ribbon_8 PF09723.10 gi|219852420|ref|YP_002466852.1| - 0.37 10.9 8.5 1.7 8.8 0.2 3.5 3 0 0 3 3 3 0 Zinc ribbon domain NTPase_1 PF03266.15 gi|219852420|ref|YP_002466852.1| - 0.87 9.5 5.4 3.5 7.5 0.1 3.4 4 0 0 4 4 3 0 NTPase Anti-TRAP PF15777.5 gi|219852420|ref|YP_002466852.1| - 6.7 6.8 11.1 1.4 8.9 0.6 3.5 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein DHH PF01368.20 gi|219852421|ref|YP_002466853.1| - 5e-29 100.5 0.1 7.5e-29 100.0 0.1 1.3 1 0 0 1 1 1 1 DHH family DRTGG PF07085.12 gi|219852421|ref|YP_002466853.1| - 3.4e-17 62.1 1.8 9e-17 60.8 1.8 1.7 1 0 0 1 1 1 1 DRTGG domain DHHA2 PF02833.14 gi|219852421|ref|YP_002466853.1| - 5.2e-12 46.1 0.0 9.7e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 DHHA2 domain CBS PF00571.28 gi|219852421|ref|YP_002466853.1| - 7.3e-09 35.9 0.0 0.0089 16.4 0.0 3.0 2 0 0 2 2 2 2 CBS domain DUF2148 PF09918.9 gi|219852422|ref|YP_002466854.1| - 4.6e-33 113.1 0.2 7.2e-33 112.4 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|219852422|ref|YP_002466854.1| - 1e-05 25.1 2.2 2.2e-05 24.0 1.6 2.0 2 0 0 2 2 2 1 Putative Fe-S cluster GHMP_kinases_N PF00288.26 gi|219852423|ref|YP_002466855.1| - 0.0003 21.0 0.1 0.00057 20.1 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Fer4_20 PF14691.6 gi|219852425|ref|YP_002466857.1| - 2e-44 149.9 0.9 3.2e-44 149.3 0.9 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|219852425|ref|YP_002466857.1| - 6.4e-36 124.1 4.4 9.8e-36 123.5 4.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|219852425|ref|YP_002466857.1| - 1.3e-12 48.0 5.7 2e-06 28.2 0.7 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|219852425|ref|YP_002466857.1| - 3.5e-11 42.9 0.8 9.4e-06 25.1 0.2 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|219852425|ref|YP_002466857.1| - 4.3e-10 39.7 1.9 3.2e-09 36.9 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|219852425|ref|YP_002466857.1| - 7.4e-10 38.8 5.9 3.4e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|219852425|ref|YP_002466857.1| - 1.3e-07 31.1 5.0 3.2e-07 29.8 0.2 2.6 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|219852425|ref|YP_002466857.1| - 1.3e-07 31.0 2.5 7e-05 22.1 0.2 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|219852425|ref|YP_002466857.1| - 4e-07 29.6 1.5 3.3e-05 23.3 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|219852425|ref|YP_002466857.1| - 7.9e-07 28.6 10.3 4.7e-05 22.8 0.1 2.9 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|219852425|ref|YP_002466857.1| - 1.1e-06 28.1 2.2 9.6e-06 25.0 2.2 2.0 1 1 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|219852425|ref|YP_002466857.1| - 1.8e-06 26.9 2.7 1.4e-05 24.0 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|219852425|ref|YP_002466857.1| - 8.8e-06 26.1 8.5 0.0029 18.0 0.6 2.9 3 0 0 3 3 2 2 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|219852425|ref|YP_002466857.1| - 3e-05 23.5 0.5 0.059 12.7 0.0 2.7 3 0 0 3 3 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|219852425|ref|YP_002466857.1| - 7.8e-05 22.4 0.8 7.8e-05 22.4 0.8 3.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|219852425|ref|YP_002466857.1| - 0.0003 20.2 0.3 0.0003 20.2 0.3 1.6 2 0 0 2 2 1 1 Flavin containing amine oxidoreductase YjeF_N PF03853.15 gi|219852425|ref|YP_002466857.1| - 0.0004 20.3 0.2 0.67 9.8 0.0 2.6 2 0 0 2 2 2 2 YjeF-related protein N-terminus PALP PF00291.25 gi|219852425|ref|YP_002466857.1| - 0.00043 19.8 6.8 0.0089 15.5 0.1 2.5 3 0 0 3 3 2 2 Pyridoxal-phosphate dependent enzyme ELFV_dehydrog PF00208.21 gi|219852425|ref|YP_002466857.1| - 0.00072 19.3 0.2 0.49 10.1 0.0 2.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XdhC_C PF13478.6 gi|219852425|ref|YP_002466857.1| - 0.0023 18.4 1.1 0.022 15.3 0.1 2.8 3 0 0 3 3 2 1 XdhC Rossmann domain Glyco_transf_4 PF13439.6 gi|219852425|ref|YP_002466857.1| - 0.005 16.9 1.0 1.9 8.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 K_oxygenase PF13434.6 gi|219852425|ref|YP_002466857.1| - 0.0058 15.8 0.3 0.43 9.7 0.0 2.5 3 0 0 3 3 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|219852425|ref|YP_002466857.1| - 0.0068 15.3 1.4 0.13 11.1 0.3 2.2 2 0 0 2 2 2 1 Tryptophan halogenase 3HCDH_N PF02737.18 gi|219852425|ref|YP_002466857.1| - 0.0088 15.9 4.6 0.13 12.1 0.1 2.5 3 0 0 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_7 PF12838.7 gi|219852425|ref|YP_002466857.1| - 0.015 15.8 0.2 0.015 15.8 0.2 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|219852425|ref|YP_002466857.1| - 0.021 14.8 0.2 0.021 14.8 0.2 2.4 3 0 0 3 3 2 0 FAD-NAD(P)-binding Shikimate_DH PF01488.20 gi|219852425|ref|YP_002466857.1| - 0.036 14.1 1.3 5.6 7.0 0.0 3.9 5 0 0 5 5 3 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|219852425|ref|YP_002466857.1| - 0.038 14.3 1.5 3 8.1 0.0 2.9 3 0 0 3 3 2 0 TrkA-N domain FMO-like PF00743.19 gi|219852425|ref|YP_002466857.1| - 0.059 11.8 0.0 5.1 5.4 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like UDPG_MGDP_dh_N PF03721.14 gi|219852425|ref|YP_002466857.1| - 0.061 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|219852425|ref|YP_002466857.1| - 0.062 12.3 0.1 0.062 12.3 0.1 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein DFP PF04127.15 gi|219852425|ref|YP_002466857.1| - 0.095 12.5 1.8 5.3 6.8 0.1 2.6 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Glyco_trans_4_4 PF13579.6 gi|219852425|ref|YP_002466857.1| - 0.099 13.1 4.0 3.7 8.0 2.1 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain SIS_2 PF13580.6 gi|219852425|ref|YP_002466857.1| - 0.12 12.4 0.5 6.4 6.8 0.0 2.8 3 0 0 3 3 2 0 SIS domain AdoHcyase_NAD PF00670.21 gi|219852425|ref|YP_002466857.1| - 0.18 11.8 4.1 1.3 9.1 0.1 3.0 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_18 PF13746.6 gi|219852425|ref|YP_002466857.1| - 0.32 11.2 3.0 0.26 11.5 0.9 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852425|ref|YP_002466857.1| - 6.1 7.6 12.3 0.11 13.0 3.0 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain DHODB_Fe-S_bind PF10418.9 gi|219852426|ref|YP_002466858.1| - 3.2e-12 46.0 2.1 9.9e-12 44.5 2.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|219852426|ref|YP_002466858.1| - 0.021 15.1 0.0 0.072 13.5 0.0 1.9 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|219852426|ref|YP_002466858.1| - 0.082 12.9 1.6 0.1 12.6 0.2 1.9 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF5591 PF17884.1 gi|219852427|ref|YP_002466859.1| - 1.2e-56 190.8 0.0 1.9e-56 190.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|219852427|ref|YP_002466859.1| - 2.8e-10 40.0 0.1 6.2e-10 38.9 0.1 1.6 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|219852427|ref|YP_002466859.1| - 0.025 13.8 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase TGT PF01702.18 gi|219852428|ref|YP_002466860.1| - 5.8e-77 259.2 0.0 7.6e-77 258.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|219852428|ref|YP_002466860.1| - 0.0061 16.4 0.0 0.032 14.1 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) AMMECR1 PF01871.17 gi|219852429|ref|YP_002466861.1| - 4.1e-52 176.2 0.0 4.6e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NosD PF05048.13 gi|219852430|ref|YP_002466862.1| - 2.9e-58 197.0 54.7 3.5e-46 157.4 32.6 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219852430|ref|YP_002466862.1| - 9.4e-45 152.3 83.0 7.3e-18 64.9 21.1 3.1 1 1 2 3 3 3 3 Right handed beta helix region Dockerin_1 PF00404.18 gi|219852430|ref|YP_002466862.1| - 0.0014 18.8 5.7 0.0079 16.4 3.6 2.7 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|219852430|ref|YP_002466862.1| - 1.5 8.5 5.8 1.8 8.3 0.4 3.1 3 0 0 3 3 3 0 EF hand AMP-binding PF00501.28 gi|219852431|ref|YP_002466863.1| - 1.8e-81 274.0 0.0 2.1e-81 273.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|219852431|ref|YP_002466863.1| - 9.2e-24 84.2 0.1 1.6e-23 83.4 0.1 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain zf-CCCH_3 PF15663.5 gi|219852431|ref|YP_002466863.1| - 0.082 13.1 0.0 0.26 11.5 0.0 1.8 2 0 0 2 2 2 0 Zinc-finger containing family AMP-binding PF00501.28 gi|219852432|ref|YP_002466864.1| - 1.2e-85 287.7 0.0 1.5e-85 287.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|219852432|ref|YP_002466864.1| - 1.1e-22 80.7 0.2 2.1e-22 79.9 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain NifU_N PF01592.16 gi|219852433|ref|YP_002466865.1| - 4.2e-49 166.0 0.1 4.8e-49 165.8 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain CO_deh_flav_C PF03450.17 gi|219852433|ref|YP_002466865.1| - 0.0055 16.9 0.1 0.022 14.9 0.0 1.8 1 1 1 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Phos_pyr_kin PF08543.12 gi|219852433|ref|YP_002466865.1| - 0.024 14.0 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Aminotran_5 PF00266.19 gi|219852434|ref|YP_002466866.1| - 6.9e-89 298.4 0.3 8.2e-89 298.1 0.3 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219852434|ref|YP_002466866.1| - 3.4e-09 36.4 0.4 4.3e-09 36.1 0.4 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|219852434|ref|YP_002466866.1| - 1.1e-08 34.9 0.8 1.8e-08 34.1 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219852434|ref|YP_002466866.1| - 0.01 14.4 0.1 0.014 13.9 0.1 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|219852434|ref|YP_002466866.1| - 0.12 11.1 0.1 0.17 10.6 0.1 1.1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain CBM_6 PF03422.15 gi|219852435|ref|YP_002466867.1| - 1.9e-80 267.3 59.6 7.9e-23 81.1 1.4 6.2 5 3 1 6 6 4 4 Carbohydrate binding module (family 6) NosD PF05048.13 gi|219852435|ref|YP_002466867.1| - 4.6e-45 153.8 33.4 1.8e-44 151.8 33.4 2.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) DUF5010_C PF18099.1 gi|219852435|ref|YP_002466867.1| - 8.7e-29 99.9 17.3 1.1e-07 32.0 0.7 4.8 4 0 0 4 4 4 4 DUF5010 C-terminal domain Beta_helix PF13229.6 gi|219852435|ref|YP_002466867.1| - 4.2e-20 72.2 33.0 3.4e-19 69.3 33.0 2.7 1 0 0 1 1 1 1 Right handed beta helix region CBM_35 PF16990.5 gi|219852435|ref|YP_002466867.1| - 2e-13 50.7 29.0 0.00035 20.8 3.7 4.9 4 0 0 4 4 4 4 Carbohydrate binding module (family 35) FAM163 PF15069.6 gi|219852435|ref|YP_002466867.1| - 0.00065 20.2 0.2 9.8 6.6 0.0 4.0 4 0 0 4 4 4 1 FAM163 family DUF2761 PF10959.8 gi|219852435|ref|YP_002466867.1| - 0.0013 18.7 11.6 4.8 7.2 0.0 4.9 5 0 0 5 5 4 1 Protein of unknown function (DUF2761) DUF1989 PF09347.10 gi|219852435|ref|YP_002466867.1| - 0.0026 17.4 0.3 0.53 9.9 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1989) MapZ_C2 PF18708.1 gi|219852435|ref|YP_002466867.1| - 0.0055 17.0 12.0 1.8 8.9 0.4 4.4 4 0 0 4 4 4 2 MapZ extracellular C-terminal domain 2 C1q PF00386.21 gi|219852435|ref|YP_002466867.1| - 0.066 13.4 0.3 16 5.7 0.0 4.1 4 0 0 4 4 4 0 C1q domain PEGA PF08308.11 gi|219852435|ref|YP_002466867.1| - 0.19 11.6 14.8 16 5.5 0.7 6.1 5 2 0 5 5 5 0 PEGA domain DUF2746 PF10874.8 gi|219852435|ref|YP_002466867.1| - 0.33 11.4 1.0 19 5.8 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2746) DDE_Tnp_1 PF01609.21 gi|219852438|ref|YP_002466870.1| - 1.3e-18 67.5 1.4 2.5e-18 66.5 1.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|219852438|ref|YP_002466870.1| - 4.7e-05 23.7 0.2 0.00011 22.5 0.2 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|219852438|ref|YP_002466870.1| - 0.017 15.1 0.9 0.034 14.2 0.2 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) DpnII-MboI PF18742.1 gi|219852439|ref|YP_002466871.1| - 7.7e-16 58.1 0.5 1.8e-15 56.8 0.5 1.7 1 0 0 1 1 1 1 REase_DpnII-MboI Phage_integrase PF00589.22 gi|219852442|ref|YP_002466874.1| - 0.014 15.2 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Phage integrase family TPR_1 PF00515.28 gi|219852443|ref|YP_002466875.1| - 4.5e-11 42.1 4.8 1e-05 25.1 0.2 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219852443|ref|YP_002466875.1| - 9.4e-11 41.0 2.7 1.6e-05 24.7 0.1 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219852443|ref|YP_002466875.1| - 1.4e-08 34.3 4.2 0.0029 17.7 0.1 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219852443|ref|YP_002466875.1| - 1.1e-07 31.4 1.7 1.2e-06 28.1 0.3 2.4 2 1 0 2 2 2 1 TPR repeat TPR_12 PF13424.6 gi|219852443|ref|YP_002466875.1| - 1.4e-05 25.3 0.3 6.1e-05 23.2 0.2 2.0 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219852443|ref|YP_002466875.1| - 1.8e-05 24.8 3.3 0.012 15.9 0.3 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219852443|ref|YP_002466875.1| - 1.9e-05 24.8 0.5 2.8e-05 24.3 0.5 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|219852443|ref|YP_002466875.1| - 0.00078 19.9 0.3 0.015 15.8 0.1 2.6 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219852443|ref|YP_002466875.1| - 0.00088 19.9 0.1 0.0036 17.9 0.0 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219852443|ref|YP_002466875.1| - 0.0012 19.0 0.0 0.55 10.4 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_3 PF07720.12 gi|219852443|ref|YP_002466875.1| - 0.0028 17.6 1.0 0.087 12.8 0.1 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219852443|ref|YP_002466875.1| - 0.0052 16.7 1.0 0.28 11.3 0.1 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|219852443|ref|YP_002466875.1| - 0.018 15.7 2.9 6.7 7.6 0.0 3.6 3 1 1 4 4 4 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|219852443|ref|YP_002466875.1| - 0.054 12.5 0.1 0.064 12.3 0.1 1.1 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_14 PF13428.6 gi|219852443|ref|YP_002466875.1| - 0.099 13.5 0.0 2.9 9.0 0.0 2.5 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|219852443|ref|YP_002466875.1| - 0.13 12.1 1.3 11 6.1 0.1 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat RPN6_N PF18055.1 gi|219852443|ref|YP_002466875.1| - 0.14 12.5 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN6 N-terminal domain zf-ribbon_3 PF13248.6 gi|219852444|ref|YP_002466876.1| - 1.2e-09 37.3 2.7 1.8e-09 36.7 2.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219852444|ref|YP_002466876.1| - 4.7e-05 23.0 0.6 7.3e-05 22.3 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|219852444|ref|YP_002466876.1| - 0.00016 21.6 0.1 0.00024 21.1 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon PLDc_N PF13396.6 gi|219852444|ref|YP_002466876.1| - 0.0073 16.2 0.1 0.0073 16.2 0.1 2.5 2 1 0 2 2 1 1 Phospholipase_D-nuclease N-terminal zf-TFIIB PF13453.6 gi|219852444|ref|YP_002466876.1| - 0.0095 15.3 0.2 4.2 6.8 0.0 2.3 2 0 0 2 2 2 2 Transcription factor zinc-finger YhfH PF14149.6 gi|219852444|ref|YP_002466876.1| - 0.013 15.4 1.0 0.71 9.9 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|219852444|ref|YP_002466876.1| - 0.018 14.7 0.6 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|219852444|ref|YP_002466876.1| - 0.02 15.7 0.1 0.031 15.0 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family TF_Zn_Ribbon PF08271.12 gi|219852444|ref|YP_002466876.1| - 0.024 14.2 0.8 0.052 13.1 0.8 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding CpXC PF14353.6 gi|219852444|ref|YP_002466876.1| - 0.048 13.7 0.2 12 5.9 0.1 2.1 2 0 0 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|219852444|ref|YP_002466876.1| - 0.088 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.16 gi|219852444|ref|YP_002466876.1| - 0.11 12.6 3.4 1.2 9.2 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-tcix PF14952.6 gi|219852444|ref|YP_002466876.1| - 0.16 11.6 1.6 3.2 7.4 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C4_Topoisom PF01396.19 gi|219852444|ref|YP_002466876.1| - 0.2 11.5 2.2 9.3 6.1 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|219852444|ref|YP_002466876.1| - 0.24 11.5 8.5 1 9.5 0.3 3.1 2 1 1 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|219852444|ref|YP_002466876.1| - 0.37 10.8 2.8 11 6.1 0.0 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|219852444|ref|YP_002466876.1| - 4.9 7.3 5.5 8.1 6.6 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF1610 PF07754.11 gi|219852444|ref|YP_002466876.1| - 8.1 6.5 7.9 7.4 6.6 1.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) VAPB_antitox PF02697.14 gi|219852445|ref|YP_002466877.1| - 0.0038 18.0 0.0 0.0056 17.4 0.0 1.5 1 1 0 1 1 1 1 Putative antitoxin HypD PF01924.16 gi|219852447|ref|YP_002466879.1| - 5.1e-137 456.7 0.3 5.8e-137 456.5 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family MS_channel PF00924.18 gi|219852448|ref|YP_002466880.1| - 2.6e-40 138.2 0.3 2.6e-40 138.2 0.3 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Reg_prop PF07494.11 gi|219852449|ref|YP_002466881.1| - 1e-06 28.3 8.6 0.36 11.2 0.1 5.1 6 0 0 6 6 6 3 Two component regulator propeller SGL PF08450.12 gi|219852449|ref|YP_002466881.1| - 1.1e-05 25.2 1.2 0.014 15.0 0.0 3.8 2 1 2 4 4 4 3 SMP-30/Gluconolactonase/LRE-like region CheD PF03975.13 gi|219852450|ref|YP_002466882.1| - 6.3e-29 100.3 0.0 7.9e-29 99.9 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|219852451|ref|YP_002466883.1| - 3e-20 71.8 4.7 3.8e-11 42.7 0.2 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|219852451|ref|YP_002466883.1| - 4.1e-08 33.3 3.2 7e-05 22.9 0.4 2.8 2 1 1 3 3 3 2 Chemotaxis phosphatase CheX CheW PF01584.19 gi|219852452|ref|YP_002466884.1| - 7.2e-21 74.3 1.5 1.8e-20 73.0 1.5 1.8 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|219852452|ref|YP_002466884.1| - 3.8e-19 68.7 0.1 1.1e-18 67.3 0.1 1.8 1 0 0 1 1 1 1 Hpt domain P2 PF07194.11 gi|219852452|ref|YP_002466884.1| - 8.9e-19 67.3 0.1 2.7e-18 65.8 0.1 1.9 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c PF02518.26 gi|219852452|ref|YP_002466884.1| - 2.8e-14 53.5 0.1 7e-14 52.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|219852452|ref|YP_002466884.1| - 4.6e-10 39.8 4.8 1.2e-09 38.5 4.8 1.7 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|219852452|ref|YP_002466884.1| - 0.028 14.3 0.1 0.43 10.4 0.1 2.3 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RRN3 PF05327.11 gi|219852452|ref|YP_002466884.1| - 0.16 10.5 0.7 0.23 9.9 0.7 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 CheB_methylest PF01339.17 gi|219852453|ref|YP_002466885.1| - 8.3e-56 188.3 0.2 1.2e-53 181.3 0.1 2.8 3 0 0 3 3 3 2 CheB methylesterase Response_reg PF00072.24 gi|219852453|ref|YP_002466885.1| - 1.6e-24 86.2 1.0 2.9e-24 85.4 1.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|219852454|ref|YP_002466886.1| - 6e-29 100.5 0.1 6.7e-29 100.3 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.12 gi|219852455|ref|YP_002466887.1| - 1.3e-16 61.1 0.5 1.8e-16 60.5 0.0 1.5 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea DUF973 PF06157.11 gi|219852456|ref|YP_002466888.1| - 0.29 10.1 1.4 0.41 9.6 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) T2SSF PF00482.23 gi|219852457|ref|YP_002466889.1| - 0.00041 20.3 0.3 0.00041 20.3 0.3 4.2 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF2542 PF10808.8 gi|219852457|ref|YP_002466889.1| - 0.34 11.4 0.0 0.34 11.4 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2542) T2SSE PF00437.20 gi|219852458|ref|YP_002466890.1| - 1.8e-49 168.2 0.0 3e-49 167.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|219852458|ref|YP_002466890.1| - 0.0018 18.8 0.0 0.0038 17.7 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|219852458|ref|YP_002466890.1| - 0.013 15.3 0.0 0.039 13.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852458|ref|YP_002466890.1| - 0.068 13.6 0.0 0.24 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF3091 PF11291.8 gi|219852458|ref|YP_002466890.1| - 0.07 13.3 0.0 15 5.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3091) Zeta_toxin PF06414.12 gi|219852458|ref|YP_002466890.1| - 0.077 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|219852458|ref|YP_002466890.1| - 0.15 12.3 0.0 0.43 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|219852458|ref|YP_002466890.1| - 0.3 11.6 0.8 0.69 10.4 0.8 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|219852459|ref|YP_002466891.1| - 1.2e-22 80.4 0.1 1.4e-22 80.2 0.1 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|219852459|ref|YP_002466891.1| - 2.2e-05 23.8 0.3 0.00012 21.4 0.3 1.9 1 1 0 1 1 1 1 Rad51 PAXNEB PF05625.11 gi|219852459|ref|YP_002466891.1| - 2.8e-05 23.5 1.0 0.00058 19.1 0.1 2.1 1 1 1 2 2 2 1 PAXNEB protein DnaB_C PF03796.15 gi|219852459|ref|YP_002466891.1| - 0.0024 17.3 0.1 0.008 15.5 0.1 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain DUF835 PF05763.12 gi|219852459|ref|YP_002466891.1| - 0.0051 16.5 0.5 0.01 15.5 0.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF835) AAA_25 PF13481.6 gi|219852459|ref|YP_002466891.1| - 0.027 14.0 0.0 0.2 11.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|219852459|ref|YP_002466891.1| - 0.061 12.5 0.0 1 8.4 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Arch_flagellin PF01917.16 gi|219852460|ref|YP_002466892.1| - 0.0001 22.6 1.8 0.00013 22.2 1.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF11 PF01345.18 gi|219852460|ref|YP_002466892.1| - 0.017 15.4 0.4 0.026 14.8 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF11 Toxin_ToxA PF11584.8 gi|219852460|ref|YP_002466892.1| - 0.06 13.3 0.1 0.077 13.0 0.1 1.3 1 0 0 1 1 1 0 Proteinaceous host-selective toxin ToxA Arch_flagellin PF01917.16 gi|219852461|ref|YP_002466893.1| - 6.7e-10 39.4 0.0 8.1e-10 39.1 0.0 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Rhabdo_glycop PF00974.18 gi|219852461|ref|YP_002466893.1| - 0.059 11.8 0.0 0.07 11.6 0.0 1.1 1 0 0 1 1 1 0 Rhabdovirus spike glycoprotein Arch_fla_DE PF04659.13 gi|219852462|ref|YP_002466894.1| - 0.00082 19.2 0.0 0.002 18.0 0.0 1.7 1 0 0 1 1 1 1 Archaeal flagella protein Dsh_C PF12316.8 gi|219852462|ref|YP_002466894.1| - 0.014 15.8 3.4 0.021 15.2 3.4 1.2 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal CDC45 PF02724.14 gi|219852462|ref|YP_002466894.1| - 0.015 13.6 9.1 0.018 13.3 9.1 1.1 1 0 0 1 1 1 0 CDC45-like protein Med2 PF11214.8 gi|219852462|ref|YP_002466894.1| - 0.036 14.2 3.0 0.071 13.3 3.0 1.5 1 0 0 1 1 1 0 Mediator complex subunit 2 BcrAD_BadFG PF01869.20 gi|219852462|ref|YP_002466894.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Presenilin PF01080.17 gi|219852462|ref|YP_002466894.1| - 1.5 7.5 4.7 1.9 7.2 4.7 1.1 1 0 0 1 1 1 0 Presenilin RNA_polI_A34 PF08208.11 gi|219852462|ref|YP_002466894.1| - 1.6 8.8 13.3 2.6 8.1 13.3 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 AATF-Che1 PF13339.6 gi|219852462|ref|YP_002466894.1| - 5.7 7.6 9.9 14 6.4 9.7 1.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor PPP4R2 PF09184.11 gi|219852462|ref|YP_002466894.1| - 7.6 6.0 14.6 11 5.5 14.6 1.3 1 0 0 1 1 1 0 PPP4R2 PK PF00224.21 gi|219852463|ref|YP_002466895.1| - 4e-113 377.8 2.4 5.1e-113 377.5 2.4 1.0 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|219852463|ref|YP_002466895.1| - 3.2e-20 72.5 0.0 1.8e-19 70.1 0.0 2.3 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|219852463|ref|YP_002466895.1| - 0.0047 16.1 1.0 0.01 15.0 0.3 1.7 1 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Glyco_hydro_97 PF10566.9 gi|219852463|ref|YP_002466895.1| - 0.18 11.1 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase 97 Peptidase_C25 PF01364.18 gi|219852463|ref|YP_002466895.1| - 0.19 10.9 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 Peptidase family C25 UDG PF03167.19 gi|219852464|ref|YP_002466896.1| - 2.6e-11 43.8 0.0 3.4e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PP2C_2 PF13672.6 gi|219852465|ref|YP_002466897.1| - 1.7e-35 122.5 0.2 2e-35 122.3 0.2 1.0 1 0 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|219852465|ref|YP_002466897.1| - 0.046 13.6 0.3 0.093 12.6 0.3 1.5 1 1 0 1 1 1 0 Stage II sporulation protein E (SpoIIE) FHA PF00498.26 gi|219852467|ref|YP_002466899.1| - 7.8e-10 39.0 0.0 1.4e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 FHA domain HTH_20 PF12840.7 gi|219852467|ref|YP_002466899.1| - 2e-07 30.9 0.0 5.9e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|219852467|ref|YP_002466899.1| - 5.8e-07 29.3 0.1 1.6e-06 27.9 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|219852467|ref|YP_002466899.1| - 4.2e-06 26.7 0.2 1.8e-05 24.7 0.1 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|219852467|ref|YP_002466899.1| - 0.00015 21.5 0.0 0.00023 20.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Yop-YscD_cpl PF16697.5 gi|219852467|ref|YP_002466899.1| - 0.00015 22.0 0.0 0.00068 19.9 0.0 2.0 1 1 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Dimerisation2 PF16864.5 gi|219852467|ref|YP_002466899.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain TrmB PF01978.19 gi|219852467|ref|YP_002466899.1| - 0.0024 17.7 0.0 0.006 16.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|219852467|ref|YP_002466899.1| - 0.006 16.9 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|219852467|ref|YP_002466899.1| - 0.019 14.5 1.8 0.075 12.6 0.4 2.6 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|219852467|ref|YP_002466899.1| - 0.096 12.8 0.2 0.16 12.1 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|219852467|ref|YP_002466899.1| - 0.15 11.9 0.1 1.1 9.2 0.0 2.4 2 1 0 2 2 2 0 MarR family Pkinase PF00069.25 gi|219852468|ref|YP_002466900.1| - 2.1e-41 142.0 0.0 2.9e-41 141.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|219852468|ref|YP_002466900.1| - 7.3e-20 71.3 0.0 1.1e-19 70.8 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Lectin_N PF03954.14 gi|219852468|ref|YP_002466900.1| - 0.058 13.1 0.0 0.058 13.1 0.0 1.9 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain DUF805 PF05656.14 gi|219852468|ref|YP_002466900.1| - 0.53 10.7 12.3 1.4 9.4 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF805) Cas_Cas6 PF01881.16 gi|219852469|ref|YP_002466901.1| - 0.00011 22.8 0.0 0.00018 22.1 0.0 1.5 1 1 0 1 1 1 1 CRISPR associated protein Cas6 DUF5591 PF17884.1 gi|219852470|ref|YP_002466902.1| - 7.7e-17 61.6 0.3 1.1e-16 61.1 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) NIR_SIR PF01077.22 gi|219852472|ref|YP_002466904.1| - 1.1e-26 93.3 0.0 1.5e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|219852472|ref|YP_002466904.1| - 4.5e-18 64.9 0.0 7.4e-18 64.2 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|219852472|ref|YP_002466904.1| - 2.1e-09 36.8 7.4 1.6e-05 24.5 0.3 3.9 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852472|ref|YP_002466904.1| - 7.4e-09 36.1 24.1 2.2e-08 34.6 8.2 2.9 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852472|ref|YP_002466904.1| - 7.8e-08 32.1 19.8 1.4e-05 24.9 2.4 4.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852472|ref|YP_002466904.1| - 1.5e-07 31.5 9.4 1.5e-07 31.5 9.4 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852472|ref|YP_002466904.1| - 9.6e-06 25.6 14.3 0.009 16.1 0.1 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852472|ref|YP_002466904.1| - 4e-05 23.6 12.8 7.4e-05 22.8 9.9 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219852472|ref|YP_002466904.1| - 5.7e-05 23.0 12.1 0.00032 20.6 3.6 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852472|ref|YP_002466904.1| - 8.7e-05 23.4 13.7 0.011 16.7 1.0 3.4 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219852472|ref|YP_002466904.1| - 0.002 18.5 18.7 0.019 15.4 3.8 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219852472|ref|YP_002466904.1| - 0.012 16.1 16.3 0.13 12.9 0.5 3.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219852472|ref|YP_002466904.1| - 0.013 16.3 10.9 0.55 11.1 3.5 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219852472|ref|YP_002466904.1| - 0.016 15.4 5.0 0.016 15.4 5.0 1.7 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219852472|ref|YP_002466904.1| - 0.27 12.0 10.4 0.13 13.0 1.8 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|219852472|ref|YP_002466904.1| - 8.8 6.9 23.7 2.5 8.6 3.0 3.1 2 1 2 4 4 3 0 4Fe-4S dicluster domain DUF3821 PF12863.7 gi|219852473|ref|YP_002466905.1| - 6.7e-52 176.4 2.2 6.7e-52 176.4 2.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3821) Lipase_GDSL_2 PF13472.6 gi|219852473|ref|YP_002466905.1| - 1.5e-14 54.8 1.1 1.5e-14 54.8 1.1 2.2 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|219852473|ref|YP_002466905.1| - 1.8e-06 28.1 0.7 3.6e-06 27.1 0.1 1.8 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase B12-binding PF02310.19 gi|219852473|ref|YP_002466905.1| - 0.004 17.2 0.0 0.0082 16.2 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain OSK PF17182.4 gi|219852473|ref|YP_002466905.1| - 0.073 12.3 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 OSK domain PvlArgDC PF01862.16 gi|219852474|ref|YP_002466906.1| - 7.9e-62 207.8 0.0 8.9e-62 207.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AIRS_C PF02769.22 gi|219852475|ref|YP_002466907.1| - 6.6e-16 58.8 0.5 1.7e-15 57.5 0.5 1.7 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|219852475|ref|YP_002466907.1| - 2.4e-09 37.7 2.8 7.8e-09 36.1 2.8 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Methyltransf_11 PF08241.12 gi|219852476|ref|YP_002466908.1| - 1.7e-23 83.1 0.0 3.2e-23 82.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852476|ref|YP_002466908.1| - 2.1e-21 76.4 0.0 8.4e-21 74.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852476|ref|YP_002466908.1| - 7.5e-16 58.4 0.0 9.4e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219852476|ref|YP_002466908.1| - 1.9e-14 53.6 0.0 5.9e-13 48.7 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|219852476|ref|YP_002466908.1| - 5e-14 52.4 0.0 1.1e-13 51.2 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852476|ref|YP_002466908.1| - 2.1e-13 50.9 0.0 3.5e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|219852476|ref|YP_002466908.1| - 1.4e-05 24.8 0.0 2.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|219852476|ref|YP_002466908.1| - 4.1e-05 23.0 0.1 9.6e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|219852476|ref|YP_002466908.1| - 0.0029 17.5 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|219852476|ref|YP_002466908.1| - 0.009 14.6 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase N6_N4_Mtase PF01555.18 gi|219852476|ref|YP_002466908.1| - 0.031 14.0 0.0 0.74 9.5 0.0 2.2 2 0 0 2 2 2 0 DNA methylase PCMT PF01135.19 gi|219852476|ref|YP_002466908.1| - 0.036 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|219852476|ref|YP_002466908.1| - 0.15 10.9 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DNA_pol3_delta2 PF13177.6 gi|219852477|ref|YP_002466909.1| - 1.8e-11 44.1 0.0 3.8e-11 43.0 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|219852477|ref|YP_002466909.1| - 2.8e-09 37.3 0.1 6.5e-09 36.1 0.1 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|219852477|ref|YP_002466909.1| - 6.2e-06 26.7 0.0 3.4e-05 24.3 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|219852477|ref|YP_002466909.1| - 9.8e-06 26.1 0.2 4.6e-05 23.9 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|219852477|ref|YP_002466909.1| - 0.0002 21.6 0.2 0.0005 20.4 0.2 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_23 PF13476.6 gi|219852477|ref|YP_002466909.1| - 0.0013 19.3 0.0 0.0017 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|219852477|ref|YP_002466909.1| - 0.006 16.5 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|219852477|ref|YP_002466909.1| - 0.0081 15.6 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|219852477|ref|YP_002466909.1| - 0.0081 15.9 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|219852477|ref|YP_002466909.1| - 0.013 15.8 0.2 0.099 12.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|219852477|ref|YP_002466909.1| - 0.016 14.6 0.0 0.041 13.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial TniB protein RuvB_N PF05496.12 gi|219852477|ref|YP_002466909.1| - 0.031 14.0 0.0 0.076 12.8 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|219852477|ref|YP_002466909.1| - 0.037 13.6 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|219852477|ref|YP_002466909.1| - 0.046 14.0 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|219852477|ref|YP_002466909.1| - 0.077 12.7 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|219852477|ref|YP_002466909.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|219852477|ref|YP_002466909.1| - 0.092 13.1 0.2 0.27 11.5 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|219852477|ref|YP_002466909.1| - 0.13 12.4 0.0 0.46 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|219852477|ref|YP_002466909.1| - 0.15 12.6 0.0 0.28 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain PPS_PS PF02006.16 gi|219852478|ref|YP_002466910.1| - 8.6e-67 224.1 0.8 1.1e-66 223.7 0.8 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase AAA_5 PF07728.14 gi|219852478|ref|YP_002466910.1| - 0.0025 17.8 0.3 0.025 14.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) TPP_enzyme_M PF00205.22 gi|219852478|ref|YP_002466910.1| - 0.044 13.5 0.6 0.3 10.8 0.3 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ASH PF15780.5 gi|219852478|ref|YP_002466910.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin GHMP_kinases_N PF00288.26 gi|219852479|ref|YP_002466911.1| - 3.2e-09 36.9 3.2 6.9e-09 35.8 3.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Flavoprotein PF02441.19 gi|219852480|ref|YP_002466912.1| - 1.2e-37 129.1 0.9 2e-37 128.4 0.9 1.4 1 0 0 1 1 1 1 Flavoprotein DFP PF04127.15 gi|219852480|ref|YP_002466912.1| - 2.5e-31 109.0 0.0 8.5e-31 107.2 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Met_10 PF02475.16 gi|219852481|ref|YP_002466913.1| - 1.5e-38 132.6 0.0 1.9e-38 132.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|219852481|ref|YP_002466913.1| - 0.019 14.5 0.0 0.037 13.6 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain NMD3 PF04981.13 gi|219852482|ref|YP_002466914.1| - 1.1e-37 129.9 0.0 1.4e-37 129.5 0.0 1.2 1 0 0 1 1 1 1 NMD3 family Virul_Fac PF10139.9 gi|219852482|ref|YP_002466914.1| - 0.0065 14.8 0.0 0.0081 14.4 0.0 1.0 1 0 0 1 1 1 1 Putative bacterial virulence factor GFA PF04828.14 gi|219852482|ref|YP_002466914.1| - 0.071 13.5 0.4 13 6.2 0.0 2.5 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-CRD PF17979.1 gi|219852482|ref|YP_002466914.1| - 0.15 12.2 0.2 6.2 6.9 0.1 2.2 2 0 0 2 2 2 0 Cysteine rich domain with multizinc binding regions zf-ribbon_3 PF13248.6 gi|219852482|ref|YP_002466914.1| - 0.57 9.7 2.8 0.38 10.2 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DUF424 PF04242.13 gi|219852483|ref|YP_002466915.1| - 2.6e-23 82.1 0.0 2.8e-23 82.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TatD_DNase PF01026.21 gi|219852484|ref|YP_002466916.1| - 1.7e-16 60.4 0.0 4.5e-15 55.7 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DHNA PF04038.12 gi|219852485|ref|YP_002466917.1| - 1.8e-37 128.1 0.0 2.1e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Peptidase_S8 PF00082.22 gi|219852486|ref|YP_002466918.1| - 7.8e-15 54.9 3.5 2.8e-13 49.8 0.3 2.9 1 1 1 2 2 2 2 Subtilase family PEGA PF08308.11 gi|219852487|ref|YP_002466919.1| - 9.4e-78 256.1 13.6 8.8e-15 54.4 0.2 5.1 5 0 0 5 5 5 5 PEGA domain CarboxypepD_reg PF13620.6 gi|219852487|ref|YP_002466919.1| - 1.2e-19 70.3 17.9 0.00054 20.2 4.5 6.6 5 2 1 6 6 6 5 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|219852487|ref|YP_002466919.1| - 2.1e-11 43.6 0.5 0.03 14.3 0.1 5.4 5 1 0 5 5 5 4 CarboxypepD_reg-like domain DUF1533 PF07550.11 gi|219852487|ref|YP_002466919.1| - 3.7e-08 33.1 0.0 0.046 13.6 0.0 5.0 4 0 0 4 4 4 2 Protein of unknown function (DUF1533) fn3_3 PF14686.6 gi|219852487|ref|YP_002466919.1| - 6.1e-05 22.7 7.3 0.19 11.6 0.0 4.5 5 0 0 5 5 5 3 Polysaccharide lyase family 4, domain II Csa1 PF06023.12 gi|219852487|ref|YP_002466919.1| - 0.0028 17.1 2.9 0.55 9.5 0.0 2.9 2 2 1 3 3 3 2 CRISPR-associated exonuclease Csa1 PBP-Tp47_c PF14888.6 gi|219852487|ref|YP_002466919.1| - 0.0075 16.2 0.5 2.7 7.9 0.0 3.6 4 0 0 4 4 4 1 Penicillin-binding protein Tp47 domain C Rhodanese PF00581.20 gi|219852488|ref|YP_002466920.1| - 3e-19 69.5 0.0 2.8e-09 37.4 0.0 2.7 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|219852488|ref|YP_002466920.1| - 9.4e-10 38.8 3.7 6e-09 36.2 1.9 2.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily HAGH_C PF16123.5 gi|219852488|ref|YP_002466920.1| - 0.12 12.9 0.0 0.2 12.2 0.0 1.3 1 0 0 1 1 1 0 Hydroxyacylglutathione hydrolase C-terminus Inhibitor_I42 PF09394.10 gi|219852489|ref|YP_002466921.1| - 3.8e-22 78.5 1.8 6.6e-22 77.7 1.8 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 AurF PF11583.8 gi|219852490|ref|YP_002466922.1| - 0.11 11.8 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 P-aminobenzoate N-oxygenase AurF NERD PF08378.11 gi|219852491|ref|YP_002466923.1| - 1.8e-06 28.4 0.0 1.9e-05 25.1 0.0 2.0 1 1 1 2 2 2 1 Nuclease-related domain SpmSyn_N PF17950.1 gi|219852491|ref|YP_002466923.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase N -terminal ThiJ_like PF17124.5 gi|219852492|ref|YP_002466924.1| - 3.6e-10 39.9 0.0 9.8e-10 38.4 0.0 1.6 1 1 0 1 1 1 1 ThiJ/PfpI family-like DJ-1_PfpI PF01965.24 gi|219852492|ref|YP_002466924.1| - 7.4e-08 32.4 0.0 2.6e-07 30.6 0.0 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family zf-ribbon_3 PF13248.6 gi|219852493|ref|YP_002466925.1| - 6.6e-06 25.4 1.2 9.1e-06 24.9 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|219852493|ref|YP_002466925.1| - 1.8e-05 24.3 1.1 2.8e-05 23.7 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|219852493|ref|YP_002466925.1| - 0.0057 16.5 1.4 0.0085 16.0 1.4 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|219852493|ref|YP_002466925.1| - 0.0059 16.6 0.7 0.0088 16.1 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|219852493|ref|YP_002466925.1| - 0.0086 16.1 1.4 0.014 15.5 1.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.19 gi|219852493|ref|YP_002466925.1| - 0.023 14.5 1.0 6.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.12 gi|219852493|ref|YP_002466925.1| - 0.025 14.6 2.0 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.6 gi|219852493|ref|YP_002466925.1| - 0.036 13.4 1.6 1 8.8 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_ribbon_17 PF17120.5 gi|219852493|ref|YP_002466925.1| - 0.066 12.8 0.9 0.086 12.5 0.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon, C4HC2 type zf-RING_7 PF02591.15 gi|219852493|ref|YP_002466925.1| - 0.14 12.4 5.3 5 7.4 0.1 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|219852493|ref|YP_002466925.1| - 0.17 12.6 1.2 0.17 12.6 1.2 1.4 2 0 0 2 2 2 0 zinc-ribbon family Zn_Tnp_IS1595 PF12760.7 gi|219852493|ref|YP_002466925.1| - 0.48 10.4 4.3 3.2 7.8 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|219852493|ref|YP_002466925.1| - 2.4 8.0 7.1 1.4 8.8 0.7 2.7 2 1 1 3 3 3 0 zinc-finger of acetyl-transferase ESCO Hexapep PF00132.24 gi|219852494|ref|YP_002466926.1| - 2.4e-07 30.2 7.7 1e-05 25.1 3.5 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|219852494|ref|YP_002466926.1| - 0.45 10.3 10.5 5.6 6.8 4.4 2.8 1 1 2 3 3 3 0 Hexapeptide repeat of succinyl-transferase zinc_ribbon_2 PF13240.6 gi|219852496|ref|YP_002466928.1| - 1.2e-08 34.4 3.1 1.9e-08 33.7 3.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|219852496|ref|YP_002466928.1| - 0.0012 18.2 2.2 0.0022 17.3 2.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Creatinase_N PF01321.18 gi|219852496|ref|YP_002466928.1| - 0.025 15.2 0.2 0.043 14.5 0.2 1.4 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain Retrotrans_gag PF03732.17 gi|219852496|ref|YP_002466928.1| - 0.055 13.7 2.4 0.097 13.0 2.4 1.5 1 0 0 1 1 1 0 Retrotransposon gag protein DZR PF12773.7 gi|219852496|ref|YP_002466928.1| - 0.058 13.4 1.8 0.1 12.6 1.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|219852496|ref|YP_002466928.1| - 0.087 13.6 1.9 0.18 12.5 1.9 1.6 1 0 0 1 1 1 0 zinc-ribbon family DUF2164 PF09932.9 gi|219852497|ref|YP_002466929.1| - 4.9e-20 71.4 0.2 5.7e-20 71.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2164) Takusan PF04822.13 gi|219852497|ref|YP_002466929.1| - 0.079 12.8 0.1 0.097 12.6 0.1 1.2 1 0 0 1 1 1 0 Takusan Fer4_16 PF13484.6 gi|219852499|ref|YP_002466931.1| - 6.9e-06 26.9 12.3 0.0048 17.8 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Flavodoxin_5 PF12724.7 gi|219852499|ref|YP_002466931.1| - 2.8e-05 24.4 0.0 4.1e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Fer4 PF00037.27 gi|219852499|ref|YP_002466931.1| - 6e-05 22.7 17.1 0.0012 18.5 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852499|ref|YP_002466931.1| - 0.00025 21.2 15.0 0.0006 19.9 15.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219852499|ref|YP_002466931.1| - 0.00056 20.4 7.3 0.0091 16.5 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852499|ref|YP_002466931.1| - 0.0033 17.5 2.7 0.0033 17.5 2.7 2.2 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219852499|ref|YP_002466931.1| - 0.0046 17.5 15.1 0.032 14.8 15.4 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Flavodoxin_1 PF00258.25 gi|219852499|ref|YP_002466931.1| - 0.006 16.8 0.0 0.0094 16.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Fer4_2 PF12797.7 gi|219852499|ref|YP_002466931.1| - 0.0063 16.5 3.3 0.0063 16.5 3.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219852499|ref|YP_002466931.1| - 0.0065 16.6 16.2 0.063 13.4 16.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852499|ref|YP_002466931.1| - 0.03 14.4 4.2 0.03 14.4 4.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219852499|ref|YP_002466931.1| - 0.042 14.3 3.5 0.042 14.3 3.5 2.4 2 1 0 2 2 1 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219852499|ref|YP_002466931.1| - 2.1 8.6 11.4 6.1 7.1 11.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain COesterase PF00135.28 gi|219852500|ref|YP_002466932.1| - 1.4e-111 373.9 0.0 2.1e-111 373.3 0.0 1.3 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 gi|219852500|ref|YP_002466932.1| - 3.1e-07 30.5 0.9 2.7e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|219852500|ref|YP_002466932.1| - 0.00049 19.6 0.1 0.0011 18.5 0.1 1.6 1 0 0 1 1 1 1 Prolyl oligopeptidase family LTD PF00932.19 gi|219852501|ref|YP_002466933.1| - 1.3e-15 57.7 1.1 3.1e-15 56.5 1.1 1.6 1 0 0 1 1 1 1 Lamin Tail Domain GPR15L PF15854.5 gi|219852501|ref|YP_002466933.1| - 0.1 12.9 0.2 0.16 12.2 0.2 1.3 1 0 0 1 1 1 0 G-protein coupled receptor ligand 15 Rota_VP2 PF05087.12 gi|219852501|ref|YP_002466933.1| - 1.2 7.1 2.2 1.7 6.7 2.2 1.0 1 0 0 1 1 1 0 Rotavirus VP2 protein Yip1 PF04893.17 gi|219852503|ref|YP_002466935.1| - 3.5e-17 62.6 18.6 4.1e-17 62.4 18.2 1.3 1 1 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|219852503|ref|YP_002466935.1| - 4.5e-05 23.3 9.8 7.8e-05 22.5 9.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) ZT_dimer PF16916.5 gi|219852503|ref|YP_002466935.1| - 0.17 12.0 0.0 0.34 11.1 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter DUF4112 PF13430.6 gi|219852503|ref|YP_002466935.1| - 1.8 8.8 6.9 0.16 12.3 1.0 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4112) Yip1 PF04893.17 gi|219852504|ref|YP_002466936.1| - 9.6e-14 51.5 24.2 1.3e-13 51.0 24.2 1.2 1 0 0 1 1 1 1 Yip1 domain DUF4519 PF15012.6 gi|219852504|ref|YP_002466936.1| - 0.18 12.0 0.9 0.49 10.6 0.9 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) Radical_SAM PF04055.21 gi|219852505|ref|YP_002466937.1| - 2.1e-14 54.2 2.2 2.6e-13 50.7 2.3 2.4 2 1 0 2 2 2 1 Radical SAM superfamily ATP-grasp_5 PF13549.6 gi|219852506|ref|YP_002466938.1| - 2.3e-61 207.1 0.0 3.6e-61 206.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|219852506|ref|YP_002466938.1| - 3e-47 159.9 0.7 5.3e-47 159.1 0.1 1.7 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|219852506|ref|YP_002466938.1| - 1e-25 90.5 1.7 1.5e-25 89.9 0.3 2.1 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|219852506|ref|YP_002466938.1| - 5e-08 33.5 0.5 1.7e-07 31.8 0.2 2.1 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|219852506|ref|YP_002466938.1| - 0.00075 19.1 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|219852506|ref|YP_002466938.1| - 0.089 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain E1-E2_ATPase PF00122.20 gi|219852507|ref|YP_002466939.1| - 5.2e-47 159.7 2.2 5.2e-47 159.7 2.2 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|219852507|ref|YP_002466939.1| - 4.6e-40 137.3 3.9 4.6e-40 137.3 3.9 2.3 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|219852507|ref|YP_002466939.1| - 2e-19 70.7 4.2 1.9e-18 67.5 4.2 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|219852507|ref|YP_002466939.1| - 4.1e-19 68.0 0.1 3.1e-18 65.2 0.0 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|219852507|ref|YP_002466939.1| - 2.6e-14 53.1 0.0 6.2e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|219852507|ref|YP_002466939.1| - 1.5e-09 38.0 0.4 5e-05 23.2 0.3 2.7 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|219852507|ref|YP_002466939.1| - 1.1e-06 29.2 0.7 3.2e-06 27.7 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF2115 PF09888.9 gi|219852508|ref|YP_002466940.1| - 4.1e-49 167.3 0.0 5.2e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) CarbpepA_inh PF02977.15 gi|219852508|ref|YP_002466940.1| - 0.14 11.9 0.4 0.31 10.8 0.4 1.5 1 0 0 1 1 1 0 Carboxypeptidase A inhibitor COG2 PF06148.11 gi|219852508|ref|YP_002466940.1| - 0.15 12.1 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1887 PF09002.11 gi|219852508|ref|YP_002466940.1| - 0.16 10.6 0.0 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Abhydrolase_1 PF00561.20 gi|219852509|ref|YP_002466941.1| - 9.8e-23 81.1 0.0 1.2e-22 80.8 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|219852509|ref|YP_002466941.1| - 5e-18 66.5 6.1 6.1e-18 66.2 6.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219852509|ref|YP_002466941.1| - 2.5e-15 56.4 0.0 2e-10 40.3 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 ABC_ATPase PF09818.9 gi|219852510|ref|YP_002466942.1| - 3.7e-61 207.3 0.0 4.9e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|219852510|ref|YP_002466942.1| - 2.1e-05 25.1 0.1 0.00014 22.4 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.6 gi|219852510|ref|YP_002466942.1| - 0.0016 18.7 0.0 0.018 15.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|219852510|ref|YP_002466942.1| - 0.0029 17.3 0.1 0.0063 16.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|219852510|ref|YP_002466942.1| - 0.014 15.3 0.1 0.05 13.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 gi|219852510|ref|YP_002466942.1| - 0.045 14.2 0.0 0.07 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|219852510|ref|YP_002466942.1| - 0.056 12.9 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.18 gi|219852510|ref|YP_002466942.1| - 0.15 11.4 0.0 0.51 9.6 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|219852510|ref|YP_002466942.1| - 0.16 10.9 0.1 0.26 10.2 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SBP_bac_3 PF00497.20 gi|219852511|ref|YP_002466943.1| - 8.1e-38 130.1 0.3 2.3e-18 66.5 0.0 2.0 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 gi|219852511|ref|YP_002466943.1| - 0.092 12.3 0.0 0.34 10.4 0.0 1.9 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system Minor_tail_Z PF06763.11 gi|219852511|ref|YP_002466943.1| - 0.17 11.7 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Prophage minor tail protein Z (GPZ) SBP_bac_3 PF00497.20 gi|219852513|ref|YP_002466945.1| - 1.5e-32 112.9 0.6 1.3e-15 57.5 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 sCache_2 PF17200.4 gi|219852513|ref|YP_002466945.1| - 1.2e-11 44.7 0.1 2.9e-11 43.5 0.1 1.7 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|219852513|ref|YP_002466945.1| - 1.5e-10 40.8 0.2 3.7e-10 39.5 0.2 1.7 1 0 0 1 1 1 1 Cache domain sCache_3_2 PF17203.4 gi|219852513|ref|YP_002466945.1| - 0.017 15.2 0.1 0.043 13.9 0.1 1.7 1 0 0 1 1 1 0 Single cache domain 3 PocR PF10114.9 gi|219852514|ref|YP_002466946.1| - 5.6e-42 143.3 0.2 2.1e-41 141.4 0.0 2.0 2 0 0 2 2 2 1 Sensory domain found in PocR PAS_4 PF08448.10 gi|219852514|ref|YP_002466946.1| - 4.5e-32 110.6 0.0 3.1e-21 75.7 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|219852514|ref|YP_002466946.1| - 4.6e-23 81.4 0.0 4.5e-10 39.5 0.0 3.6 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|219852514|ref|YP_002466946.1| - 2.1e-21 76.2 0.0 7.5e-21 74.4 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219852514|ref|YP_002466946.1| - 5e-21 74.9 0.0 1.7e-10 41.1 0.1 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|219852514|ref|YP_002466946.1| - 2.9e-14 53.5 0.3 1.6e-13 51.1 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|219852514|ref|YP_002466946.1| - 6.9e-10 38.7 0.0 0.00059 19.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|219852514|ref|YP_002466946.1| - 5.4e-08 33.0 0.1 0.0013 18.9 0.1 2.9 2 0 0 2 2 2 2 PAS fold HisKA_4TM PF16926.5 gi|219852514|ref|YP_002466946.1| - 1e-05 25.2 0.0 2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|219852514|ref|YP_002466946.1| - 0.0049 16.5 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.6 gi|219852514|ref|YP_002466946.1| - 0.013 16.1 0.1 0.064 13.9 0.1 2.2 2 0 0 2 2 2 0 PAS domain PAS_7 PF12860.7 gi|219852514|ref|YP_002466946.1| - 0.014 15.5 0.3 4.1 7.6 0.0 4.0 3 1 0 3 3 3 0 PAS fold DUF2884 PF11101.8 gi|219852514|ref|YP_002466946.1| - 0.033 13.7 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) 4HB_MCP_1 PF12729.7 gi|219852514|ref|YP_002466946.1| - 0.089 12.3 2.6 0.24 10.9 2.6 1.7 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction MLTR_LBD PF17765.1 gi|219852514|ref|YP_002466946.1| - 0.11 12.6 0.8 0.29 11.2 0.0 2.2 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain JIP_LZII PF16471.5 gi|219852514|ref|YP_002466946.1| - 0.12 12.6 5.1 0.35 11.1 5.1 1.7 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II CENP-H PF05837.12 gi|219852514|ref|YP_002466946.1| - 0.22 12.0 2.7 0.61 10.5 2.7 1.7 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Sec34 PF04136.15 gi|219852514|ref|YP_002466946.1| - 0.66 9.8 4.6 0.7 9.8 1.8 2.3 3 0 0 3 3 3 0 Sec34-like family DUF3552 PF12072.8 gi|219852514|ref|YP_002466946.1| - 0.78 9.1 7.9 1.6 8.1 7.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) V-SNARE_C PF12352.8 gi|219852514|ref|YP_002466946.1| - 0.89 9.9 5.0 0.74 10.1 2.4 2.1 2 0 0 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus ZapB PF06005.12 gi|219852514|ref|YP_002466946.1| - 1.5 9.3 7.2 5.4 7.5 7.2 2.0 1 0 0 1 1 1 0 Cell division protein ZapB APG6_N PF17675.1 gi|219852514|ref|YP_002466946.1| - 4.5 7.8 12.4 4.9 7.7 8.2 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region HisKA PF00512.25 gi|219852514|ref|YP_002466946.1| - 9.8 6.3 9.1 8.1 6.6 0.1 3.7 4 0 0 4 4 3 0 His Kinase A (phospho-acceptor) domain NosD PF05048.13 gi|219852515|ref|YP_002466947.1| - 1.1e-45 155.8 28.3 3.1e-45 154.3 28.3 1.7 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) PKD PF00801.20 gi|219852515|ref|YP_002466947.1| - 3.9e-29 100.3 36.5 1.4e-13 50.5 3.2 5.4 6 0 0 6 6 6 3 PKD domain CBM_6 PF03422.15 gi|219852515|ref|YP_002466947.1| - 1.1e-23 83.9 0.3 1.1e-23 83.9 0.3 4.6 4 2 0 4 4 4 1 Carbohydrate binding module (family 6) Beta_helix PF13229.6 gi|219852515|ref|YP_002466947.1| - 1.7e-23 83.2 29.3 4e-23 82.0 29.2 1.8 1 1 0 1 1 1 1 Right handed beta helix region DUF5010_C PF18099.1 gi|219852515|ref|YP_002466947.1| - 1.1e-12 48.1 1.2 2.6e-12 46.9 0.1 2.2 2 0 0 2 2 2 1 DUF5010 C-terminal domain PKD_3 PF16820.5 gi|219852515|ref|YP_002466947.1| - 1.6e-05 24.6 5.0 0.047 13.4 0.1 3.9 4 0 0 4 4 4 2 PKD-like domain DUF2115 PF09888.9 gi|219852518|ref|YP_002466950.1| - 3e-54 184.0 0.0 3.5e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) HATPase_c_2 PF13581.6 gi|219852519|ref|YP_002466951.1| - 8.8e-23 80.6 0.0 1.6e-22 79.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Acetyltransf_1 PF00583.25 gi|219852519|ref|YP_002466951.1| - 0.00066 19.9 0.1 0.018 15.3 0.0 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family HATPase_c PF02518.26 gi|219852519|ref|YP_002466951.1| - 0.051 14.1 0.0 0.095 13.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMP-binding PF00501.28 gi|219852520|ref|YP_002466952.1| - 1.1e-07 30.9 0.0 3.4e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C_2 PF14535.6 gi|219852520|ref|YP_002466952.1| - 0.006 16.9 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain LuxC PF05893.14 gi|219852521|ref|YP_002466953.1| - 1.3e-74 251.6 0.0 2e-74 251.1 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) AMP-binding PF00501.28 gi|219852521|ref|YP_002466953.1| - 9.8e-09 34.3 0.0 1.6e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme CBM_19 PF03427.13 gi|219852521|ref|YP_002466953.1| - 0.86 9.6 2.3 0.66 10.0 0.2 1.9 2 0 0 2 2 2 0 Carbohydrate binding domain (family 19) LuxE PF04443.12 gi|219852522|ref|YP_002466954.1| - 5.8e-37 127.6 0.0 1e-36 126.8 0.0 1.3 1 1 0 1 1 1 1 Acyl-protein synthetase, LuxE MFS_3 PF05977.13 gi|219852523|ref|YP_002466955.1| - 3.9e-28 98.1 26.3 4.4e-28 98.0 26.3 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|219852523|ref|YP_002466955.1| - 1.1e-20 73.9 67.8 3.7e-20 72.2 48.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily HATPase_c_2 PF13581.6 gi|219852524|ref|YP_002466956.1| - 1.7e-27 95.8 0.0 1.9e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain STAS_2 PF13466.6 gi|219852525|ref|YP_002466957.1| - 4.1e-14 52.7 2.6 4.9e-14 52.4 2.6 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 gi|219852525|ref|YP_002466957.1| - 1.2e-11 44.2 0.0 1.4e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 STAS domain DUF2106 PF09879.9 gi|219852525|ref|YP_002466957.1| - 0.014 15.0 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) SpoIIE PF07228.12 gi|219852526|ref|YP_002466958.1| - 5.4e-53 179.8 0.1 7.9e-53 179.3 0.1 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.12 gi|219852526|ref|YP_002466958.1| - 2.1e-35 121.7 14.5 2.1e-35 121.7 14.5 1.6 2 0 0 2 2 2 1 5TMR of 5TMR-LYT ECF-ribofla_trS PF07155.12 gi|219852526|ref|YP_002466958.1| - 0.0054 16.7 11.3 0.0054 16.7 11.3 2.1 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component Lon_C PF05362.13 gi|219852528|ref|YP_002466960.1| - 2e-17 63.4 0.7 4.4e-17 62.3 0.7 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Arg_decarbox_C PF17944.1 gi|219852528|ref|YP_002466960.1| - 0.037 14.6 0.8 0.097 13.2 0.8 1.7 1 0 0 1 1 1 0 Arginine decarboxylase C-terminal helical extension DUF2316 PF10078.9 gi|219852528|ref|YP_002466960.1| - 0.084 13.1 1.3 0.13 12.5 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) Thioredoxin PF00085.20 gi|219852529|ref|YP_002466961.1| - 2e-18 66.3 0.0 2.6e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|219852529|ref|YP_002466961.1| - 3e-06 27.7 0.1 4e-05 24.0 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|219852529|ref|YP_002466961.1| - 4e-06 26.4 0.0 4.7e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_6 PF13848.6 gi|219852529|ref|YP_002466961.1| - 0.00018 21.5 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|219852529|ref|YP_002466961.1| - 0.0077 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.11 gi|219852529|ref|YP_002466961.1| - 0.01 15.8 0.0 0.016 15.1 0.0 1.5 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.6 gi|219852529|ref|YP_002466961.1| - 0.079 13.1 0.4 1.2 9.3 0.2 2.2 1 1 1 2 2 2 0 Thioredoxin Glutaredoxin PF00462.24 gi|219852529|ref|YP_002466961.1| - 0.082 13.1 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin AsnC_trans_reg PF01037.21 gi|219852530|ref|YP_002466962.1| - 8.9e-09 35.2 0.2 1e-08 35.0 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain ThiI PF02568.14 gi|219852530|ref|YP_002466962.1| - 0.0017 18.0 0.1 0.0018 17.9 0.1 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) FtsX_ECD PF18075.1 gi|219852530|ref|YP_002466962.1| - 0.0045 17.6 0.5 0.012 16.2 0.3 1.7 1 1 1 2 2 2 1 FtsX extracellular domain NapD PF03927.13 gi|219852530|ref|YP_002466962.1| - 0.006 16.6 0.4 0.0078 16.2 0.4 1.1 1 0 0 1 1 1 1 NapD protein HHH_5 PF14520.6 gi|219852530|ref|YP_002466962.1| - 0.0062 17.1 0.5 0.035 14.7 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Spt5-NGN PF03439.13 gi|219852530|ref|YP_002466962.1| - 0.042 13.7 0.3 8.5 6.4 0.0 2.0 1 1 1 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section HMA PF00403.26 gi|219852530|ref|YP_002466962.1| - 0.048 14.1 1.5 0.22 12.0 1.5 2.1 1 1 0 1 1 1 0 Heavy-metal-associated domain GYD PF08734.11 gi|219852530|ref|YP_002466962.1| - 0.059 13.3 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 GYD domain HHH PF00633.23 gi|219852530|ref|YP_002466962.1| - 0.12 12.3 0.1 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif Beta-TrCP_D PF12125.8 gi|219852531|ref|YP_002466963.1| - 0.039 13.8 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 D domain of beta-TrCP ThiI PF02568.14 gi|219852533|ref|YP_002466965.1| - 2.8e-67 226.2 0.0 3.1e-67 226.0 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|219852533|ref|YP_002466965.1| - 5.7e-05 22.7 0.0 0.013 15.0 0.0 2.6 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|219852533|ref|YP_002466965.1| - 8.9e-05 21.4 0.0 0.00017 20.5 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|219852533|ref|YP_002466965.1| - 0.00089 19.1 0.0 0.023 14.4 0.0 2.1 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|219852533|ref|YP_002466965.1| - 0.01 14.9 0.0 0.028 13.6 0.0 1.7 2 0 0 2 2 2 0 NAD synthase Pox_RNA_Pol_19 PF05320.12 gi|219852534|ref|YP_002466966.1| - 0.018 15.0 0.1 0.024 14.6 0.1 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit SH3_19 PF18597.1 gi|219852534|ref|YP_002466966.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 Myosin X N-terminal SH3 domain ThiF PF00899.21 gi|219852535|ref|YP_002466967.1| - 8.6e-62 208.7 0.0 1.4e-61 208.0 0.0 1.2 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|219852535|ref|YP_002466967.1| - 0.00021 21.4 0.2 0.0004 20.5 0.2 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|219852535|ref|YP_002466967.1| - 0.00022 21.5 0.3 0.00042 20.6 0.2 1.5 1 1 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|219852535|ref|YP_002466967.1| - 0.0017 18.6 0.6 0.0045 17.2 0.6 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|219852535|ref|YP_002466967.1| - 0.004 17.3 0.1 0.0061 16.7 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|219852535|ref|YP_002466967.1| - 0.0063 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|219852535|ref|YP_002466967.1| - 0.0084 16.0 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|219852535|ref|YP_002466967.1| - 0.021 14.4 1.3 0.033 13.8 1.3 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|219852535|ref|YP_002466967.1| - 0.026 14.9 0.1 0.048 14.1 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|219852535|ref|YP_002466967.1| - 0.037 13.3 0.1 0.058 12.6 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|219852535|ref|YP_002466967.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|219852535|ref|YP_002466967.1| - 0.15 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Aminotran_5 PF00266.19 gi|219852536|ref|YP_002466968.1| - 3.7e-129 430.9 0.0 4.2e-129 430.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|219852536|ref|YP_002466968.1| - 8.4e-08 31.8 0.0 1.1e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|219852536|ref|YP_002466968.1| - 1.1e-07 31.4 0.0 1.5e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219852536|ref|YP_002466968.1| - 5e-06 26.1 0.0 9.6e-06 25.1 0.0 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219852536|ref|YP_002466968.1| - 2.4e-05 23.0 0.0 6.1e-05 21.7 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SepSecS PF05889.13 gi|219852536|ref|YP_002466968.1| - 0.1 11.3 0.0 0.18 10.4 0.0 1.4 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DUF5640 PF18692.1 gi|219852537|ref|YP_002466969.1| - 0.0034 17.4 0.1 0.0057 16.7 0.1 1.6 1 1 0 1 1 1 1 Family of unknown function (DUF5640) DUF362 PF04015.12 gi|219852538|ref|YP_002466970.1| - 9.5e-46 156.6 0.0 1.2e-45 156.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|219852538|ref|YP_002466970.1| - 1.3e-08 34.3 17.0 1.9e-05 24.2 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852538|ref|YP_002466970.1| - 5.6e-07 29.3 19.8 8.8e-05 22.4 6.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852538|ref|YP_002466970.1| - 9.9e-06 26.1 15.8 1.9e-05 25.1 15.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852538|ref|YP_002466970.1| - 3e-05 24.0 12.5 6.1e-05 23.1 12.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852538|ref|YP_002466970.1| - 8.8e-05 22.9 10.1 0.033 14.6 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852538|ref|YP_002466970.1| - 0.00011 22.3 15.1 0.00022 21.4 15.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852538|ref|YP_002466970.1| - 0.0002 21.4 17.5 0.0068 16.5 18.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852538|ref|YP_002466970.1| - 0.0016 18.5 19.1 0.011 15.8 4.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852538|ref|YP_002466970.1| - 0.0018 19.2 16.7 0.015 16.2 5.1 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|219852538|ref|YP_002466970.1| - 0.028 14.9 2.8 0.028 14.9 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|219852538|ref|YP_002466970.1| - 0.037 14.7 13.4 0.48 11.2 0.9 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|219852538|ref|YP_002466970.1| - 0.046 14.3 17.2 0.79 10.3 4.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|219852538|ref|YP_002466970.1| - 1.8 9.2 18.7 1.2 9.8 4.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain DisA_N PF02457.16 gi|219852539|ref|YP_002466971.1| - 2.1e-16 59.6 0.0 4e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding CoA_binding PF02629.19 gi|219852540|ref|YP_002466972.1| - 1.3e-22 80.3 0.4 1.3e-21 77.1 0.5 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|219852540|ref|YP_002466972.1| - 5.1e-13 49.1 0.4 2.9e-12 46.7 0.4 2.0 1 1 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|219852540|ref|YP_002466972.1| - 1.3e-10 41.2 0.2 3.8e-10 39.7 0.0 1.9 2 1 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|219852540|ref|YP_002466972.1| - 2.3e-07 31.3 0.2 9e-07 29.4 0.1 1.9 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|219852541|ref|YP_002466973.1| - 6.1e-45 153.3 0.0 1.1e-44 152.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|219852541|ref|YP_002466973.1| - 4.5e-12 46.0 2.6 7.5e-12 45.3 2.3 1.5 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|219852541|ref|YP_002466973.1| - 5.2e-10 39.1 0.2 5.2e-10 39.1 0.2 1.7 2 1 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|219852541|ref|YP_002466973.1| - 0.026 14.3 0.8 0.05 13.4 0.8 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain GARS_A PF01071.19 gi|219852541|ref|YP_002466973.1| - 0.099 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain POR PF01558.18 gi|219852542|ref|YP_002466974.1| - 1.9e-26 93.2 0.4 2.5e-26 92.8 0.4 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|219852543|ref|YP_002466975.1| - 1.1e-38 132.4 0.2 1.5e-38 132.0 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|219852544|ref|YP_002466976.1| - 1.4e-74 250.7 2.0 1.7e-74 250.4 2.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|219852544|ref|YP_002466976.1| - 7.4e-18 64.7 0.0 1.4e-17 63.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|219852544|ref|YP_002466976.1| - 0.00032 20.4 0.3 0.00069 19.3 0.1 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|219852545|ref|YP_002466977.1| - 6.7e-12 44.7 10.6 5.3e-07 29.2 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852545|ref|YP_002466977.1| - 3.1e-11 43.7 8.1 6.1e-07 29.9 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852545|ref|YP_002466977.1| - 2.2e-09 37.0 15.6 8.4e-07 28.8 1.4 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852545|ref|YP_002466977.1| - 1.6e-08 34.1 13.7 8.8e-06 25.5 1.4 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219852545|ref|YP_002466977.1| - 3.8e-08 33.3 11.6 2.3e-07 30.8 12.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852545|ref|YP_002466977.1| - 3.9e-08 33.3 7.3 9.2e-05 22.5 1.0 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852545|ref|YP_002466977.1| - 5.1e-06 27.3 12.2 5e-05 24.2 12.5 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219852545|ref|YP_002466977.1| - 6.3e-06 26.3 9.9 0.0022 18.1 4.0 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852545|ref|YP_002466977.1| - 3.6e-05 23.9 16.4 0.0028 18.0 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|219852545|ref|YP_002466977.1| - 0.0041 17.8 1.2 0.0041 17.8 1.2 2.7 2 2 2 4 4 4 1 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|219852545|ref|YP_002466977.1| - 0.0058 17.1 16.5 0.036 14.6 16.6 2.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219852545|ref|YP_002466977.1| - 0.047 14.2 0.6 0.047 14.2 0.6 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|219852545|ref|YP_002466977.1| - 0.13 13.2 4.0 0.13 13.2 4.0 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219852545|ref|YP_002466977.1| - 0.68 10.4 18.4 5.7 7.5 1.9 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fumerase_C PF05683.12 gi|219852546|ref|YP_002466978.1| - 4.2e-34 117.7 0.1 4.7e-34 117.5 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|219852547|ref|YP_002466979.1| - 5.6e-87 291.6 0.1 6.4e-87 291.4 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) GGDEF_2 PF17853.1 gi|219852547|ref|YP_002466979.1| - 0.16 12.2 0.1 0.44 10.8 0.1 1.8 1 1 0 1 1 1 0 GGDEF-like domain Cation_efflux PF01545.21 gi|219852549|ref|YP_002466981.1| - 1.2e-40 139.4 20.1 1.5e-40 139.1 20.1 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|219852549|ref|YP_002466981.1| - 1.5e-23 82.7 0.1 2.7e-23 81.9 0.1 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Ppx-GppA PF02541.16 gi|219852550|ref|YP_002466982.1| - 1.3e-56 192.1 0.0 1.8e-56 191.6 0.0 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.22 gi|219852550|ref|YP_002466982.1| - 0.00039 20.6 0.3 0.001 19.3 0.2 1.8 2 0 0 2 2 2 1 HD domain FtsA PF14450.6 gi|219852550|ref|YP_002466982.1| - 0.00045 20.6 0.3 1.4 9.4 0.2 3.4 2 1 0 2 2 2 2 Cell division protein FtsA CHAD PF05235.14 gi|219852551|ref|YP_002466983.1| - 4.1e-58 197.0 1.4 4.5e-58 196.9 0.4 1.6 2 0 0 2 2 2 1 CHAD domain Metallophos_2 PF12850.7 gi|219852551|ref|YP_002466983.1| - 3e-25 89.3 0.0 1.9e-23 83.4 0.0 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|219852551|ref|YP_002466983.1| - 7.2e-08 33.2 0.0 1.2e-06 29.2 0.0 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PP_kinase_C_1 PF17941.1 gi|219852552|ref|YP_002466984.1| - 1.6e-68 229.4 0.0 3e-68 228.6 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|219852552|ref|YP_002466984.1| - 7.8e-63 211.0 0.0 1.2e-61 207.2 0.0 2.1 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|219852552|ref|YP_002466984.1| - 5.5e-62 209.0 0.0 5.1e-61 205.8 0.0 2.3 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|219852552|ref|YP_002466984.1| - 6.6e-34 116.5 0.0 1.4e-33 115.4 0.0 1.6 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|219852552|ref|YP_002466984.1| - 1.1e-10 41.6 0.0 1.3e-06 28.3 0.0 3.7 3 1 0 3 3 3 2 PLD-like domain PP_kinase_C_1 PF17941.1 gi|219852553|ref|YP_002466985.1| - 1.6e-76 255.5 0.0 2.5e-76 254.9 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|219852553|ref|YP_002466985.1| - 1.2e-67 227.4 0.7 3e-67 226.1 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_C PF13090.6 gi|219852553|ref|YP_002466985.1| - 3.7e-62 208.8 0.0 1.1e-61 207.3 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_N PF13089.6 gi|219852553|ref|YP_002466985.1| - 2.5e-37 127.5 0.1 4.4e-37 126.7 0.1 1.4 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|219852553|ref|YP_002466985.1| - 1.8e-11 44.1 0.0 4.6e-05 23.3 0.0 2.9 2 1 0 2 2 2 2 PLD-like domain NHL PF01436.21 gi|219852554|ref|YP_002466986.1| - 6.7e-38 126.8 15.2 2e-07 30.7 0.1 6.7 6 0 0 6 6 6 6 NHL repeat PKD PF00801.20 gi|219852554|ref|YP_002466986.1| - 1.1e-29 102.0 18.5 3.2e-13 49.3 1.0 4.1 3 0 0 3 3 3 3 PKD domain CBM_6 PF03422.15 gi|219852554|ref|YP_002466986.1| - 1.7e-20 73.6 1.6 1.7e-20 73.6 1.6 3.8 2 2 0 3 3 3 1 Carbohydrate binding module (family 6) SGL PF08450.12 gi|219852554|ref|YP_002466986.1| - 9.9e-14 51.5 5.9 0.00058 19.5 0.2 5.2 2 1 4 6 6 6 5 SMP-30/Gluconolactonase/LRE-like region DUF5010_C PF18099.1 gi|219852554|ref|YP_002466986.1| - 3.2e-11 43.4 1.8 2.6e-10 40.4 0.1 2.5 2 0 0 2 2 2 1 DUF5010 C-terminal domain DUF5128 PF17170.4 gi|219852554|ref|YP_002466986.1| - 4.9e-05 22.6 0.0 0.088 11.9 0.0 2.4 2 0 0 2 2 2 2 6-bladed beta-propeller SBBP PF06739.11 gi|219852554|ref|YP_002466986.1| - 4.9e-05 23.2 21.1 0.26 11.3 0.1 6.4 6 0 0 6 6 6 3 Beta-propeller repeat Phytase-like PF13449.6 gi|219852554|ref|YP_002466986.1| - 0.00048 20.2 0.3 28 4.5 0.0 4.7 2 1 2 4 4 4 0 Esterase-like activity of phytase PKD_3 PF16820.5 gi|219852554|ref|YP_002466986.1| - 0.00063 19.4 6.6 0.22 11.3 0.0 3.8 4 0 0 4 4 4 2 PKD-like domain Arylesterase PF01731.20 gi|219852554|ref|YP_002466986.1| - 0.017 15.3 0.0 14 5.9 0.0 3.6 3 0 0 3 3 3 0 Arylesterase PKD PF00801.20 gi|219852555|ref|YP_002466987.1| - 6.2e-30 102.9 44.1 5.1e-09 35.8 5.4 6.0 6 0 0 6 6 6 4 PKD domain CBM_6 PF03422.15 gi|219852555|ref|YP_002466987.1| - 1.6e-26 93.0 1.9 1.6e-26 93.0 1.9 4.7 5 1 0 5 5 5 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852555|ref|YP_002466987.1| - 2.4e-12 47.0 2.1 5e-12 45.9 0.3 2.5 2 0 0 2 2 2 1 DUF5010 C-terminal domain CarbopepD_reg_2 PF13715.6 gi|219852555|ref|YP_002466987.1| - 3.6e-06 26.9 3.8 0.059 13.4 0.0 4.7 3 1 1 4 4 4 2 CarboxypepD_reg-like domain CBM_35 PF16990.5 gi|219852555|ref|YP_002466987.1| - 5e-05 23.5 0.6 5e-05 23.5 0.6 3.5 3 0 0 3 3 3 1 Carbohydrate binding module (family 35) PKD_3 PF16820.5 gi|219852555|ref|YP_002466987.1| - 0.00046 19.9 10.7 0.98 9.2 0.2 5.3 5 0 0 5 5 5 3 PKD-like domain bMG3 PF11974.8 gi|219852555|ref|YP_002466987.1| - 0.036 14.1 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Mut7-C PF01927.16 gi|219852556|ref|YP_002466988.1| - 3.2e-32 111.6 0.0 3.7e-32 111.4 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain PIN_10 PF18478.1 gi|219852556|ref|YP_002466988.1| - 0.0089 16.2 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 PIN like domain DUF5615 PF18480.1 gi|219852556|ref|YP_002466988.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) zinc_ribbon_9 PF14369.6 gi|219852556|ref|YP_002466988.1| - 0.54 10.6 5.8 3 8.2 3.0 2.4 2 0 0 2 2 2 0 zinc-ribbon Radical_SAM PF04055.21 gi|219852557|ref|YP_002466989.1| - 3.4e-19 69.8 0.0 1.3e-18 67.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219852557|ref|YP_002466989.1| - 0.068 13.4 0.1 0.18 12.0 0.1 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain DZR PF12773.7 gi|219852557|ref|YP_002466989.1| - 0.12 12.4 0.3 0.12 12.4 0.3 3.2 3 1 0 3 3 3 0 Double zinc ribbon Rpr2 PF04032.16 gi|219852557|ref|YP_002466989.1| - 0.31 11.4 0.1 0.31 11.4 0.1 2.4 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 gi|219852557|ref|YP_002466989.1| - 8.9 6.5 9.7 16 5.7 0.0 3.8 4 0 0 4 4 4 0 Zinc ribbon domain AA_kinase PF00696.28 gi|219852558|ref|YP_002466990.1| - 1.3e-23 83.8 4.1 4.9e-23 82.0 4.1 1.7 1 1 0 1 1 1 1 Amino acid kinase family ANF_receptor PF01094.28 gi|219852558|ref|YP_002466990.1| - 0.15 11.1 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region HhH-GPD PF00730.25 gi|219852559|ref|YP_002466991.1| - 2.7e-23 82.5 0.0 3.5e-23 82.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|219852559|ref|YP_002466991.1| - 4.3e-07 29.5 0.1 1.2e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|219852559|ref|YP_002466991.1| - 4.2e-06 26.9 2.1 9.1e-06 25.9 2.1 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|219852559|ref|YP_002466991.1| - 0.00089 19.8 0.1 2.1 9.0 0.0 2.6 2 1 0 2 2 2 2 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|219852559|ref|YP_002466991.1| - 0.2 11.6 0.0 0.45 10.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) PHO4 PF01384.20 gi|219852560|ref|YP_002466992.1| - 2.5e-88 296.4 51.7 3.5e-87 292.6 51.7 2.6 1 1 0 1 1 1 1 Phosphate transporter family Rick_17kDa_Anti PF05433.15 gi|219852560|ref|YP_002466992.1| - 3.3 7.6 9.2 15 5.6 1.8 2.9 2 0 0 2 2 2 0 Glycine zipper 2TM domain PhoU_div PF01865.16 gi|219852561|ref|YP_002466993.1| - 1.1e-23 83.7 1.2 1.3e-23 83.4 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|219852561|ref|YP_002466993.1| - 0.028 14.9 1.7 2.3 8.7 0.2 2.7 1 1 2 3 3 3 0 PhoU domain Mo25 PF08569.11 gi|219852561|ref|YP_002466993.1| - 0.11 11.9 0.2 0.12 11.8 0.2 1.1 1 0 0 1 1 1 0 Mo25-like AP_endonuc_2 PF01261.24 gi|219852562|ref|YP_002466994.1| - 2.3e-24 86.0 0.1 3e-24 85.6 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ATP-grasp_5 PF13549.6 gi|219852563|ref|YP_002466995.1| - 1.4e-62 211.0 0.0 2.3e-62 210.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|219852563|ref|YP_002466995.1| - 1.1e-52 177.5 0.2 2.4e-52 176.4 0.2 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|219852563|ref|YP_002466995.1| - 5.1e-27 94.7 0.1 1.7e-26 93.0 0.1 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|219852563|ref|YP_002466995.1| - 3.3e-14 53.3 1.4 6.9e-14 52.3 0.3 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|219852563|ref|YP_002466995.1| - 0.061 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp PF02222.22 gi|219852563|ref|YP_002466995.1| - 0.084 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain NosD PF05048.13 gi|219852564|ref|YP_002466996.1| - 4.5e-199 658.0 177.5 1.2e-39 136.0 17.9 7.3 5 1 2 7 7 7 7 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219852564|ref|YP_002466996.1| - 7.2e-89 295.6 241.1 3.6e-17 62.7 26.6 10.2 6 4 4 10 10 10 9 Right handed beta helix region PKD PF00801.20 gi|219852564|ref|YP_002466996.1| - 3.6e-20 71.6 13.6 9.6e-10 38.2 3.2 4.1 3 0 0 3 3 3 2 PKD domain LTD PF00932.19 gi|219852564|ref|YP_002466996.1| - 1.2e-19 70.8 1.4 1.2e-19 70.8 1.4 6.2 3 1 0 3 3 3 1 Lamin Tail Domain CBM_26 PF16824.5 gi|219852564|ref|YP_002466996.1| - 0.036 14.2 0.3 0.58 10.3 0.0 2.9 3 0 0 3 3 3 0 C-terminal carbohydrate-binding module DUF2624 PF11116.8 gi|219852564|ref|YP_002466996.1| - 0.38 11.7 2.8 10 7.1 0.1 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF2624) Rubredoxin PF00301.20 gi|219852565|ref|YP_002466997.1| - 7.8e-41 137.9 10.2 8.7e-21 73.7 2.1 2.1 2 0 0 2 2 2 2 Rubredoxin Zn_ribbon_SprT PF17283.2 gi|219852565|ref|YP_002466997.1| - 0.00086 19.2 6.8 0.15 12.0 0.1 3.7 3 1 1 4 4 4 1 SprT-like zinc ribbon domain zf-C2H2_3 PF13878.6 gi|219852565|ref|YP_002466997.1| - 0.002 17.9 4.6 0.89 9.4 0.3 3.9 4 0 0 4 4 4 1 zinc-finger of acetyl-transferase ESCO zf-Di19 PF05605.12 gi|219852565|ref|YP_002466997.1| - 0.0023 18.2 4.6 4.4 7.7 0.0 3.6 4 0 0 4 4 4 1 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 gi|219852565|ref|YP_002466997.1| - 0.0042 17.2 11.3 1.1 9.5 2.5 4.0 2 2 1 3 3 3 1 Zinc ribbon domain DZR PF12773.7 gi|219852565|ref|YP_002466997.1| - 0.0045 17.0 1.7 0.56 10.3 0.3 3.1 1 1 1 2 2 2 1 Double zinc ribbon PHD_4 PF16866.5 gi|219852565|ref|YP_002466997.1| - 0.005 16.9 2.7 0.61 10.2 0.1 3.0 2 2 0 3 3 3 1 PHD-finger zf-Sec23_Sec24 PF04810.15 gi|219852565|ref|YP_002466997.1| - 0.0058 16.6 3.5 18 5.5 0.0 4.0 4 0 0 4 4 4 0 Sec23/Sec24 zinc finger zf-HIT PF04438.16 gi|219852565|ref|YP_002466997.1| - 0.013 15.3 12.5 5.2 7.0 0.8 4.1 4 0 0 4 4 4 0 HIT zinc finger zf-nanos PF05741.13 gi|219852565|ref|YP_002466997.1| - 0.014 15.6 6.5 22 5.4 0.1 4.1 4 0 0 4 4 4 0 Nanos RNA binding domain HypA PF01155.19 gi|219852565|ref|YP_002466997.1| - 0.023 14.7 0.3 4.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|219852565|ref|YP_002466997.1| - 0.029 14.3 7.7 13 5.8 0.2 3.9 3 1 1 4 4 4 0 Transposase zinc-ribbon domain C1_2 PF03107.16 gi|219852565|ref|YP_002466997.1| - 0.029 14.7 10.3 0.38 11.1 0.6 3.7 3 1 0 3 3 3 0 C1 domain zinc_ribbon_10 PF10058.9 gi|219852565|ref|YP_002466997.1| - 0.033 13.9 7.0 1.8 8.4 0.1 3.9 4 0 0 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|219852565|ref|YP_002466997.1| - 0.033 13.7 14.6 0.45 10.1 0.2 4.1 3 1 0 3 3 3 0 TFIIB zinc-binding zf-C2H2_4 PF13894.6 gi|219852565|ref|YP_002466997.1| - 0.066 14.1 11.9 11 7.2 0.1 4.2 4 0 0 4 4 4 0 C2H2-type zinc finger Vps36-NZF-N PF16988.5 gi|219852565|ref|YP_002466997.1| - 0.09 12.2 3.5 11 5.5 0.0 3.4 4 0 0 4 4 4 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-Mss51 PF13824.6 gi|219852565|ref|YP_002466997.1| - 0.12 12.5 8.3 4.4 7.5 2.2 3.8 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|219852565|ref|YP_002466997.1| - 0.18 11.7 4.9 3.8 7.5 0.2 3.4 1 1 3 4 4 4 0 Putative transposase DNA-binding domain Zn-C2H2_12 PF18112.1 gi|219852565|ref|YP_002466997.1| - 0.2 12.2 18.1 0.72 10.4 0.3 4.3 4 0 0 4 4 4 0 Autophagy receptor zinc finger-C2H2 domain Nudix_N_2 PF14803.6 gi|219852565|ref|YP_002466997.1| - 0.26 11.3 9.6 5.8 6.9 0.2 4.1 4 0 0 4 4 4 0 Nudix N-terminal Cys_rich_CPCC PF14206.6 gi|219852565|ref|YP_002466997.1| - 0.39 10.6 11.2 22 5.0 3.5 3.7 3 1 0 3 3 3 0 Cysteine-rich CPCC A2L_zn_ribbon PF08792.10 gi|219852565|ref|YP_002466997.1| - 0.4 10.4 14.1 15 5.4 0.2 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-C2H2_9 PF16293.5 gi|219852565|ref|YP_002466997.1| - 0.41 10.5 1.3 38 4.2 0.0 3.0 3 0 0 3 3 3 0 C2H2 type zinc-finger (1 copy) UPF0547 PF10571.9 gi|219852565|ref|YP_002466997.1| - 0.54 10.4 14.4 2 8.5 0.3 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-CCHC_2 PF13696.6 gi|219852565|ref|YP_002466997.1| - 0.54 10.1 21.9 3.8 7.4 1.6 4.2 4 0 0 4 4 4 0 Zinc knuckle Prok-RING_4 PF14447.6 gi|219852565|ref|YP_002466997.1| - 0.57 10.1 7.2 23 4.9 0.0 3.5 4 0 0 4 4 3 0 Prokaryotic RING finger family 4 zf-C2H2 PF00096.26 gi|219852565|ref|YP_002466997.1| - 1.1 9.9 13.5 8.4 7.1 0.5 4.1 4 0 0 4 4 4 0 Zinc finger, C2H2 type zinc_ribbon_9 PF14369.6 gi|219852565|ref|YP_002466997.1| - 1.1 9.6 5.6 30 5.0 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon Desulfoferrod_N PF06397.12 gi|219852565|ref|YP_002466997.1| - 1.2 8.9 13.0 0.3 10.7 0.5 3.5 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.6 gi|219852565|ref|YP_002466997.1| - 1.5 9.3 14.1 2.6 8.6 0.3 3.9 4 0 0 4 4 4 0 Zinc-finger double domain zf-RING_2 PF13639.6 gi|219852565|ref|YP_002466997.1| - 2.1 8.8 6.9 32 5.0 0.2 3.7 4 0 0 4 4 4 0 Ring finger domain zf-BED PF02892.15 gi|219852565|ref|YP_002466997.1| - 2.2 8.4 4.1 31 4.7 0.2 2.7 2 1 1 3 3 3 0 BED zinc finger Rubredoxin_2 PF18073.1 gi|219852565|ref|YP_002466997.1| - 8.4 6.2 12.1 2.7 7.8 0.2 3.9 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-C2H2_6 PF13912.6 gi|219852565|ref|YP_002466997.1| - 9.8 6.3 12.9 16 5.6 0.9 4.0 4 0 0 4 4 4 0 C2H2-type zinc finger Radical_SAM_N PF08497.10 gi|219852566|ref|YP_002466998.1| - 4.8e-126 420.0 0.0 6.4e-126 419.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|219852566|ref|YP_002466998.1| - 4.7e-26 91.9 0.0 7.7e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|219852566|ref|YP_002466998.1| - 2.7e-12 47.4 0.0 6.6e-12 46.1 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Lactamase_B_2 PF12706.7 gi|219852567|ref|YP_002466999.1| - 1.9e-22 79.8 0.4 2.6e-10 40.2 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219852567|ref|YP_002466999.1| - 1.6e-16 60.9 0.2 5.5e-14 52.6 0.0 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily RmlD_sub_bind PF04321.17 gi|219852567|ref|YP_002466999.1| - 0.026 13.6 0.2 0.038 13.1 0.2 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Lactamase_B_4 PF13691.6 gi|219852567|ref|YP_002466999.1| - 0.097 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 tRNase Z endonuclease AP_endonuc_2 PF01261.24 gi|219852568|ref|YP_002467000.1| - 4.4e-17 62.2 0.2 5.5e-17 61.9 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AAA_17 PF13207.6 gi|219852569|ref|YP_002467001.1| - 1.1e-11 45.3 0.1 2.1e-11 44.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|219852569|ref|YP_002467001.1| - 2e-06 28.4 0.0 2.9e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|219852569|ref|YP_002467001.1| - 0.0035 17.5 0.0 0.007 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|219852569|ref|YP_002467001.1| - 0.0087 16.2 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase Radical_SAM PF04055.21 gi|219852570|ref|YP_002467002.1| - 1.8e-15 57.7 0.0 2.4e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219852570|ref|YP_002467002.1| - 3e-06 27.6 0.0 5.3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219852570|ref|YP_002467002.1| - 0.0066 16.6 0.0 0.024 14.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain ThiC_Rad_SAM PF01964.18 gi|219852571|ref|YP_002467003.1| - 4e-171 569.4 1.7 4.6e-171 569.2 1.7 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PKD PF00801.20 gi|219852572|ref|YP_002467004.1| - 1.3e-32 111.4 43.8 2.2e-12 46.6 2.8 6.3 6 1 0 6 6 6 4 PKD domain CBM_6 PF03422.15 gi|219852572|ref|YP_002467004.1| - 7.1e-28 97.4 2.2 7.1e-28 97.4 2.2 5.7 4 3 0 5 5 5 2 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852572|ref|YP_002467004.1| - 4.1e-14 52.7 0.4 4.1e-14 52.7 0.4 3.0 2 0 0 2 2 2 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219852572|ref|YP_002467004.1| - 8.2e-06 26.1 0.5 8.2e-06 26.1 0.5 3.2 5 0 0 5 5 5 1 Carbohydrate binding module (family 35) PEGA PF08308.11 gi|219852572|ref|YP_002467004.1| - 1.7e-05 24.6 18.5 0.31 11.0 2.3 6.8 6 1 0 6 6 6 3 PEGA domain PKD_3 PF16820.5 gi|219852572|ref|YP_002467004.1| - 0.00046 19.9 12.7 0.31 10.8 0.0 5.8 6 0 0 6 6 6 2 PKD-like domain I-set PF07679.16 gi|219852572|ref|YP_002467004.1| - 0.4 10.8 3.4 45 4.2 0.3 4.0 3 1 1 4 4 4 0 Immunoglobulin I-set domain CarbopepD_reg_2 PF13715.6 gi|219852572|ref|YP_002467004.1| - 2.9 7.9 21.6 0.64 10.1 0.1 5.8 6 0 0 6 6 6 0 CarboxypepD_reg-like domain DUF3558 PF12079.8 gi|219852573|ref|YP_002467005.1| - 0.23 11.4 14.4 0.37 10.8 14.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3558) PRR18 PF15671.5 gi|219852574|ref|YP_002467006.1| - 0.21 11.4 8.7 0.34 10.7 8.7 1.2 1 0 0 1 1 1 0 Proline-rich protein family 18 Pro_isomerase PF00160.21 gi|219852575|ref|YP_002467007.1| - 4.2e-52 176.6 0.5 4.2e-52 176.6 0.5 1.4 2 0 0 2 2 2 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF1702 PF08012.11 gi|219852575|ref|YP_002467007.1| - 0.39 9.5 2.4 0.51 9.2 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) Pro_isomerase PF00160.21 gi|219852576|ref|YP_002467008.1| - 1.7e-51 174.6 0.4 1.9e-51 174.5 0.4 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TPR_1 PF00515.28 gi|219852577|ref|YP_002467009.1| - 2.4e-21 74.6 0.0 2.2e-06 27.2 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219852577|ref|YP_002467009.1| - 1.6e-20 71.5 0.0 6.1e-06 25.9 0.1 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219852577|ref|YP_002467009.1| - 3.4e-18 65.0 0.9 5.6e-08 32.3 1.2 3.1 1 1 2 3 3 3 2 TPR repeat TPR_8 PF13181.6 gi|219852577|ref|YP_002467009.1| - 2.1e-17 61.8 0.0 3.7e-05 23.6 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219852577|ref|YP_002467009.1| - 4.1e-16 59.3 8.5 2.8e-09 37.5 1.8 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219852577|ref|YP_002467009.1| - 4.7e-14 52.4 7.9 3e-08 33.8 1.8 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219852577|ref|YP_002467009.1| - 5.7e-14 51.4 0.2 0.00013 22.1 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|219852577|ref|YP_002467009.1| - 2.6e-12 47.1 2.6 2.4e-08 34.4 0.7 2.4 2 1 1 3 3 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219852577|ref|YP_002467009.1| - 2.8e-11 42.6 0.2 0.016 15.2 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219852577|ref|YP_002467009.1| - 4e-11 42.8 3.4 0.0091 16.7 0.0 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|219852577|ref|YP_002467009.1| - 5.8e-08 32.8 2.2 0.00019 21.5 0.2 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|219852577|ref|YP_002467009.1| - 1.3e-06 28.6 1.3 2.1 9.1 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|219852577|ref|YP_002467009.1| - 3.1e-05 24.1 0.1 0.027 14.7 0.0 1.6 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|219852577|ref|YP_002467009.1| - 6.5e-05 22.7 4.4 0.29 11.1 0.1 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|219852577|ref|YP_002467009.1| - 8.5e-05 22.7 0.4 0.23 11.6 0.2 3.0 2 1 0 2 2 2 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|219852577|ref|YP_002467009.1| - 0.00023 20.5 0.5 0.12 11.6 0.1 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|219852577|ref|YP_002467009.1| - 0.00036 20.3 7.4 0.015 15.0 0.3 3.0 1 1 3 4 4 4 2 Tetratricopeptide repeat-like domain Alkyl_sulf_dimr PF14863.6 gi|219852577|ref|YP_002467009.1| - 0.00038 20.9 0.1 0.00088 19.7 0.1 1.5 1 1 1 2 2 2 1 Alkyl sulfatase dimerisation TPR_4 PF07721.14 gi|219852577|ref|YP_002467009.1| - 0.0058 17.1 6.9 3.8 8.4 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat MaAIMP_sms PF16951.5 gi|219852577|ref|YP_002467009.1| - 0.0065 16.2 0.0 0.0099 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative methionine and alanine importer, small subunit MIT PF04212.18 gi|219852577|ref|YP_002467009.1| - 0.015 15.4 0.5 0.12 12.5 0.2 2.4 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain BTAD PF03704.17 gi|219852577|ref|YP_002467009.1| - 0.018 15.5 0.6 0.084 13.3 0.1 1.8 1 1 1 2 2 2 0 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.6 gi|219852577|ref|YP_002467009.1| - 0.034 14.2 0.0 0.061 13.4 0.0 1.4 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|219852577|ref|YP_002467009.1| - 0.076 11.9 0.1 1.7 7.4 0.0 1.9 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 FAT PF02259.23 gi|219852577|ref|YP_002467009.1| - 0.092 11.9 0.0 0.16 11.1 0.0 1.4 1 1 0 1 1 1 0 FAT domain Transcrip_act PF04949.13 gi|219852578|ref|YP_002467010.1| - 0.044 13.7 1.0 0.049 13.5 1.0 1.1 1 0 0 1 1 1 0 Transcriptional activator DUF4199 PF13858.6 gi|219852579|ref|YP_002467011.1| - 0.0058 17.1 2.8 0.0074 16.7 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4199) NPV_P10 PF05531.12 gi|219852579|ref|YP_002467011.1| - 0.026 15.0 0.3 0.051 14.1 0.3 1.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein MHC2-interact PF09307.10 gi|219852579|ref|YP_002467011.1| - 0.12 12.3 1.0 0.23 11.5 1.0 1.5 1 0 0 1 1 1 0 CLIP, MHC2 interacting PTS_EIIC PF02378.18 gi|219852579|ref|YP_002467011.1| - 0.29 10.1 8.3 0.63 9.0 8.2 1.6 1 1 0 1 1 1 0 Phosphotransferase system, EIIC E1-E2_ATPase PF00122.20 gi|219852579|ref|YP_002467011.1| - 0.39 10.2 4.0 0.26 10.8 2.4 1.5 1 1 0 1 1 1 0 E1-E2 ATPase DHHC PF01529.20 gi|219852579|ref|YP_002467011.1| - 1.1 9.3 6.2 1.5 8.9 6.2 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase HTH_5 PF01022.20 gi|219852580|ref|YP_002467012.1| - 2.5e-09 36.9 0.0 4.4e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|219852580|ref|YP_002467012.1| - 9.4e-07 28.6 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|219852580|ref|YP_002467012.1| - 9.9e-07 28.2 0.1 1.8e-05 24.2 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|219852580|ref|YP_002467012.1| - 4.4e-05 23.3 0.0 8.2e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|219852580|ref|YP_002467012.1| - 0.001 18.8 0.0 0.0037 17.0 0.0 1.9 2 1 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|219852580|ref|YP_002467012.1| - 0.002 18.1 0.0 0.0032 17.4 0.0 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|219852580|ref|YP_002467012.1| - 0.0023 18.0 0.0 0.0045 17.0 0.0 1.5 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|219852580|ref|YP_002467012.1| - 0.021 15.0 0.0 0.077 13.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|219852580|ref|YP_002467012.1| - 0.023 14.7 0.0 0.044 13.8 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn helix DUF2250 PF10007.9 gi|219852580|ref|YP_002467012.1| - 0.047 13.8 0.0 0.074 13.2 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|219852580|ref|YP_002467012.1| - 0.06 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family FaeA PF04703.12 gi|219852580|ref|YP_002467012.1| - 0.065 13.6 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein Fe_dep_repress PF01325.19 gi|219852580|ref|YP_002467012.1| - 0.067 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LPD22 PF18834.1 gi|219852580|ref|YP_002467012.1| - 0.069 13.4 0.0 0.083 13.1 0.0 1.2 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 HTH_IclR PF09339.10 gi|219852580|ref|YP_002467012.1| - 0.082 12.7 0.0 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|219852580|ref|YP_002467012.1| - 0.084 12.8 0.1 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 HTH domain GntR PF00392.21 gi|219852580|ref|YP_002467012.1| - 0.09 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family ArsR PF09824.9 gi|219852580|ref|YP_002467012.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Peptidase_M50 PF02163.22 gi|219852581|ref|YP_002467013.1| - 0.00013 21.3 11.0 0.012 14.8 0.2 3.1 2 1 0 3 3 3 3 Peptidase family M50 CM_2 PF01817.21 gi|219852582|ref|YP_002467014.1| - 8.1e-16 58.1 6.0 9.3e-16 57.9 6.0 1.0 1 0 0 1 1 1 1 Chorismate mutase type II PPK2 PF03976.14 gi|219852583|ref|YP_002467015.1| - 9.6e-145 480.0 5.6 1e-85 286.9 0.5 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) DUF98 PF01947.16 gi|219852583|ref|YP_002467015.1| - 0.002 18.1 0.1 0.08 12.9 0.0 2.6 2 0 0 2 2 2 1 p-hydroxybenzoic acid synthase AAA_18 PF13238.6 gi|219852583|ref|YP_002467015.1| - 0.0035 17.9 0.4 2.6 8.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain FAM176 PF14851.6 gi|219852583|ref|YP_002467015.1| - 6 6.5 6.2 1.5 8.5 0.5 2.4 3 0 0 3 3 3 0 FAM176 family SUI1 PF01253.22 gi|219852584|ref|YP_002467016.1| - 7.4e-23 80.9 0.1 9.2e-23 80.6 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|219852584|ref|YP_002467016.1| - 0.0058 16.4 0.6 0.0077 15.9 0.6 1.2 1 0 0 1 1 1 1 DTW domain Img2 PF05046.14 gi|219852584|ref|YP_002467016.1| - 0.007 16.6 0.2 0.012 15.9 0.2 1.6 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) GATase_3 PF07685.14 gi|219852585|ref|YP_002467017.1| - 2.2e-49 167.7 0.0 3.2e-49 167.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|219852585|ref|YP_002467017.1| - 1.8e-23 83.4 0.2 1.1e-22 80.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|219852585|ref|YP_002467017.1| - 2.2e-20 73.0 0.0 3.4e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|219852585|ref|YP_002467017.1| - 1.6e-05 24.8 0.0 3.8e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|219852585|ref|YP_002467017.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 DUF1611 PF07755.11 gi|219852585|ref|YP_002467017.1| - 0.02 14.2 0.0 0.12 11.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain DJ-1_PfpI PF01965.24 gi|219852585|ref|YP_002467017.1| - 0.023 14.5 0.1 0.067 13.0 0.1 1.7 1 0 0 1 1 1 0 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|219852585|ref|YP_002467017.1| - 0.094 12.5 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Peptidase C26 SNO PF01174.19 gi|219852585|ref|YP_002467017.1| - 0.15 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family ACT PF01842.25 gi|219852586|ref|YP_002467018.1| - 0.0031 17.3 2.5 0.015 15.1 0.3 2.7 2 1 1 3 3 3 2 ACT domain DUF1949 PF09186.11 gi|219852586|ref|YP_002467018.1| - 0.12 12.3 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) Homoserine_dh PF00742.19 gi|219852587|ref|YP_002467019.1| - 3.8e-55 186.5 0.1 5.4e-55 186.0 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|219852587|ref|YP_002467019.1| - 4.6e-11 43.4 0.1 8.4e-11 42.5 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|219852587|ref|YP_002467019.1| - 0.00025 20.8 0.1 0.00046 20.0 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.18 gi|219852587|ref|YP_002467019.1| - 0.002 18.1 1.2 0.019 14.8 0.5 2.5 2 1 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|219852587|ref|YP_002467019.1| - 0.0043 17.3 0.2 0.019 15.2 0.2 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|219852587|ref|YP_002467019.1| - 0.03 13.9 0.4 0.11 12.1 0.0 2.1 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|219852587|ref|YP_002467019.1| - 0.033 14.2 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|219852587|ref|YP_002467019.1| - 0.055 13.1 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|219852587|ref|YP_002467019.1| - 0.11 13.1 0.1 0.26 11.9 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent HTH_23 PF13384.6 gi|219852588|ref|YP_002467020.1| - 0.00015 21.4 0.2 0.00043 20.0 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.19 gi|219852588|ref|YP_002467020.1| - 0.00022 21.1 0.0 0.00038 20.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|219852588|ref|YP_002467020.1| - 0.0006 19.6 0.0 0.0019 18.1 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|219852588|ref|YP_002467020.1| - 0.003 17.6 0.0 0.0099 16.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|219852588|ref|YP_002467020.1| - 0.0032 17.2 0.0 0.017 14.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|219852588|ref|YP_002467020.1| - 0.0049 17.0 0.0 0.0096 16.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|219852588|ref|YP_002467020.1| - 0.0093 16.0 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_17 PF12728.7 gi|219852588|ref|YP_002467020.1| - 0.014 15.6 0.0 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_43 PF09904.9 gi|219852588|ref|YP_002467020.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix RP-C PF03428.13 gi|219852588|ref|YP_002467020.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF2206 PF09971.9 gi|219852589|ref|YP_002467021.1| - 3.3e-121 404.6 19.7 3.3e-121 404.6 19.7 3.1 2 1 1 3 3 3 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.11 gi|219852589|ref|YP_002467021.1| - 8.9e-06 25.3 12.0 8.9e-06 25.3 12.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1616) Glycos_transf_1 PF00534.20 gi|219852590|ref|YP_002467022.1| - 1.8e-24 86.2 0.0 2.9e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219852590|ref|YP_002467022.1| - 4.6e-23 82.1 0.0 7.9e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219852590|ref|YP_002467022.1| - 1.3e-17 64.4 0.6 2.2e-17 63.6 0.6 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|219852590|ref|YP_002467022.1| - 8.4e-13 49.1 0.0 1.4e-12 48.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|219852590|ref|YP_002467022.1| - 2.5e-07 30.8 0.1 3.8e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|219852590|ref|YP_002467022.1| - 4e-07 30.3 0.0 1.1e-06 28.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|219852591|ref|YP_002467023.1| - 4.4e-31 107.7 0.0 6.8e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219852591|ref|YP_002467023.1| - 2.1e-21 76.8 0.0 3.7e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219852591|ref|YP_002467023.1| - 1.2e-14 54.6 0.0 2.5e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|219852591|ref|YP_002467023.1| - 1e-06 29.3 0.0 6.9e-06 26.6 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|219852591|ref|YP_002467023.1| - 0.0012 18.6 0.0 0.0028 17.4 0.0 1.7 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|219852591|ref|YP_002467023.1| - 0.04 14.3 0.0 0.073 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|219852592|ref|YP_002467024.1| - 6.8e-32 110.4 0.0 1.5e-31 109.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219852592|ref|YP_002467024.1| - 3e-31 108.7 0.0 4.7e-31 108.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|219852592|ref|YP_002467024.1| - 7.7e-26 91.1 0.0 1.6e-25 90.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|219852592|ref|YP_002467024.1| - 6.5e-22 78.7 0.0 3.5e-21 76.3 0.0 2.1 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|219852592|ref|YP_002467024.1| - 4.3e-10 39.7 0.0 8.6e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|219852592|ref|YP_002467024.1| - 7.2e-08 32.7 0.0 2e-07 31.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|219852592|ref|YP_002467024.1| - 4e-05 23.4 0.1 9.9e-05 22.1 0.1 1.7 1 1 0 1 1 1 1 Starch synthase catalytic domain DUF3492 PF11997.8 gi|219852592|ref|YP_002467024.1| - 0.075 12.8 0.6 0.27 10.9 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3492) Semialdhyde_dh PF01118.24 gi|219852593|ref|YP_002467025.1| - 4.4e-33 114.3 0.0 6.5e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|219852593|ref|YP_002467025.1| - 2.4e-31 109.3 0.0 3.5e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Sacchrp_dh_NADP PF03435.18 gi|219852593|ref|YP_002467025.1| - 0.0024 18.1 0.0 0.0038 17.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|219852593|ref|YP_002467025.1| - 0.013 15.6 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|219852593|ref|YP_002467025.1| - 0.026 15.4 0.0 0.042 14.7 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 gi|219852593|ref|YP_002467025.1| - 0.035 14.8 0.0 0.074 13.8 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Alba PF01918.21 gi|219852594|ref|YP_002467026.1| - 4.5e-18 64.8 0.7 5.8e-18 64.5 0.7 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|219852594|ref|YP_002467026.1| - 0.019 14.9 0.3 0.029 14.3 0.2 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P PAS_3 PF08447.12 gi|219852596|ref|YP_002467028.1| - 8.1e-39 131.8 0.9 5.5e-21 74.6 0.2 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|219852596|ref|YP_002467028.1| - 3.2e-27 95.3 0.0 8e-27 94.0 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|219852596|ref|YP_002467028.1| - 5.2e-12 45.6 0.1 2.2e-11 43.6 0.1 2.2 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|219852596|ref|YP_002467028.1| - 5.2e-08 32.9 0.0 0.0062 16.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852596|ref|YP_002467028.1| - 3.1e-06 27.4 0.0 0.0091 16.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|219852596|ref|YP_002467028.1| - 1.3e-05 25.4 0.2 0.12 12.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.6 gi|219852596|ref|YP_002467028.1| - 0.00066 19.5 0.0 0.0016 18.3 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|219852596|ref|YP_002467028.1| - 0.021 14.6 0.0 0.22 11.3 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RtcR PF06956.11 gi|219852596|ref|YP_002467028.1| - 0.11 11.9 0.1 1 8.8 0.0 2.3 2 1 0 2 2 2 0 Regulator of RNA terminal phosphate cyclase MID_pPIWI_RE PF18157.1 gi|219852596|ref|YP_002467028.1| - 0.16 12.3 0.0 0.34 11.2 0.0 1.5 1 0 0 1 1 1 0 MID domain of pPIWI_RE Orthopox_A43R PF06517.11 gi|219852597|ref|YP_002467029.1| - 0.12 12.2 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Orthopoxvirus A43R protein TBP PF00352.21 gi|219852598|ref|YP_002467030.1| - 1.5e-45 153.0 0.1 9.4e-24 83.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|219852598|ref|YP_002467030.1| - 1.3e-06 28.4 0.0 0.023 14.8 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Kelch_4 PF13418.6 gi|219852598|ref|YP_002467030.1| - 0.062 13.3 0.3 2.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Galactose oxidase, central domain HD PF01966.22 gi|219852600|ref|YP_002467032.1| - 9.2e-11 42.0 0.0 1.3e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 HD domain TFIIE_alpha PF02002.17 gi|219852601|ref|YP_002467033.1| - 4.8e-18 64.9 2.7 7.4e-18 64.3 2.7 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|219852601|ref|YP_002467033.1| - 0.0081 15.7 5.7 0.14 11.7 0.2 2.4 1 1 1 2 2 2 2 TFIIB zinc-binding HypA PF01155.19 gi|219852601|ref|YP_002467033.1| - 0.0097 15.9 0.0 0.014 15.4 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbon_6 PF10005.9 gi|219852601|ref|YP_002467033.1| - 0.026 15.2 0.3 0.069 13.8 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|219852601|ref|YP_002467033.1| - 0.03 13.8 0.4 0.053 13.0 0.4 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com HTH_9 PF08221.11 gi|219852601|ref|YP_002467033.1| - 0.075 13.1 0.0 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.10 gi|219852601|ref|YP_002467033.1| - 0.076 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain PuR_N PF09182.10 gi|219852601|ref|YP_002467033.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal zf-C2HE PF16278.5 gi|219852601|ref|YP_002467033.1| - 0.35 11.4 3.1 7.2 7.1 3.1 2.4 1 1 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger Rubredoxin_2 PF18073.1 gi|219852601|ref|YP_002467033.1| - 0.38 10.5 2.5 12 5.8 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain ATP-grasp_3 PF02655.14 gi|219852602|ref|YP_002467034.1| - 1.1e-30 106.8 0.0 1.4e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|219852602|ref|YP_002467034.1| - 1.3e-07 31.4 0.0 2.7e-07 30.4 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|219852602|ref|YP_002467034.1| - 0.00016 21.3 0.0 0.0045 16.5 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|219852602|ref|YP_002467034.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Epimerase PF01370.21 gi|219852602|ref|YP_002467034.1| - 0.036 13.5 0.0 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Trm56 PF01994.16 gi|219852603|ref|YP_002467035.1| - 1.8e-48 163.4 0.0 2.2e-48 163.1 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TPP_enzyme_C PF02775.21 gi|219852605|ref|YP_002467037.1| - 8.9e-27 93.8 0.0 1.4e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YjeF_N PF03853.15 gi|219852605|ref|YP_002467037.1| - 0.28 11.1 1.9 29 4.5 0.0 3.0 3 0 0 3 3 3 0 YjeF-related protein N-terminus POR_N PF01855.19 gi|219852606|ref|YP_002467038.1| - 8.2e-70 235.1 0.1 1e-69 234.8 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|219852606|ref|YP_002467038.1| - 3.3e-34 117.2 0.1 5.9e-34 116.4 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|219852606|ref|YP_002467038.1| - 1.8e-07 31.1 0.1 3.9e-07 30.0 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PDZ_6 PF17820.1 gi|219852606|ref|YP_002467038.1| - 0.12 12.3 0.0 0.48 10.3 0.0 2.0 2 0 0 2 2 2 0 PDZ domain Fer4 PF00037.27 gi|219852607|ref|YP_002467039.1| - 3.5e-12 45.6 15.5 1.6e-06 27.7 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852607|ref|YP_002467039.1| - 6.8e-09 35.7 27.2 7.7e-07 29.2 14.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219852607|ref|YP_002467039.1| - 2.2e-08 34.6 10.1 0.00058 20.4 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852607|ref|YP_002467039.1| - 3.5e-08 33.2 13.3 6.7e-05 22.8 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852607|ref|YP_002467039.1| - 1e-07 31.6 9.6 0.0016 18.4 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219852607|ref|YP_002467039.1| - 2e-07 31.8 9.4 0.0017 19.3 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219852607|ref|YP_002467039.1| - 8.9e-07 29.0 26.6 4.5e-05 23.5 14.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852607|ref|YP_002467039.1| - 1.9e-06 27.9 25.1 6e-05 23.1 15.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219852607|ref|YP_002467039.1| - 1e-05 26.0 8.3 0.02 15.4 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852607|ref|YP_002467039.1| - 0.00031 21.1 14.6 0.079 13.4 4.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852607|ref|YP_002467039.1| - 0.003 17.9 15.5 0.07 13.7 4.7 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|219852607|ref|YP_002467039.1| - 0.015 16.2 23.3 0.13 13.3 4.3 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219852607|ref|YP_002467039.1| - 0.027 15.3 13.2 1.4 9.8 3.7 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219852607|ref|YP_002467039.1| - 0.03 15.1 13.0 0.29 11.9 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|219852607|ref|YP_002467039.1| - 0.066 13.8 12.6 0.24 12.0 2.9 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I A2L_zn_ribbon PF08792.10 gi|219852607|ref|YP_002467039.1| - 2.7 7.8 12.4 0.64 9.8 2.1 2.6 2 1 0 2 2 2 0 A2L zinc ribbon domain POR PF01558.18 gi|219852608|ref|YP_002467040.1| - 1.7e-39 135.7 0.9 2e-39 135.5 0.9 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF3572 PF12096.8 gi|219852608|ref|YP_002467040.1| - 0.12 12.6 0.2 0.63 10.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) Epimerase PF01370.21 gi|219852610|ref|YP_002467042.1| - 2.3e-45 154.9 1.0 3.7e-45 154.3 0.1 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219852610|ref|YP_002467042.1| - 3e-37 128.8 0.1 5.1e-37 128.0 0.1 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|219852610|ref|YP_002467042.1| - 5.3e-17 61.7 0.1 6.4e-17 61.5 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|219852610|ref|YP_002467042.1| - 4.7e-13 48.9 0.1 6.8e-13 48.4 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|219852610|ref|YP_002467042.1| - 4.6e-11 42.4 0.0 4.7e-10 39.1 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|219852610|ref|YP_002467042.1| - 3.7e-10 40.0 0.2 1.4e-09 38.1 0.1 1.8 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|219852610|ref|YP_002467042.1| - 3.2e-09 36.3 0.1 2.9e-05 23.4 0.0 2.3 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|219852610|ref|YP_002467042.1| - 0.00063 19.2 2.9 0.0082 15.6 0.1 2.8 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|219852610|ref|YP_002467042.1| - 0.0036 17.2 0.2 0.012 15.5 0.1 1.8 2 0 0 2 2 2 1 KR domain PhosphMutase PF10143.9 gi|219852611|ref|YP_002467043.1| - 3.7e-54 183.1 0.0 5e-54 182.7 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|219852611|ref|YP_002467043.1| - 4.2e-37 127.9 0.0 5.2e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|219852611|ref|YP_002467043.1| - 0.00052 19.7 0.0 0.0019 17.9 0.0 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase AAA_16 PF13191.6 gi|219852613|ref|YP_002467045.1| - 3.6e-08 34.0 0.0 4.3e-07 30.5 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|219852613|ref|YP_002467045.1| - 4.2e-08 33.5 0.0 8.7e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|219852613|ref|YP_002467045.1| - 3.2e-05 23.9 0.0 0.00031 20.7 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|219852613|ref|YP_002467045.1| - 0.00011 22.7 0.0 0.00024 21.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|219852613|ref|YP_002467045.1| - 0.00021 21.2 0.0 0.0005 20.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain Viral_helicase1 PF01443.18 gi|219852613|ref|YP_002467045.1| - 0.0029 17.4 0.0 0.0044 16.8 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase DUF815 PF05673.13 gi|219852613|ref|YP_002467045.1| - 0.0034 16.6 0.0 0.0058 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|219852613|ref|YP_002467045.1| - 0.0042 16.4 0.0 0.0058 15.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|219852613|ref|YP_002467045.1| - 0.0088 15.8 0.2 0.029 14.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|219852613|ref|YP_002467045.1| - 0.011 15.5 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|219852613|ref|YP_002467045.1| - 0.021 14.7 0.2 0.072 13.0 0.1 1.9 2 0 0 2 2 2 0 NTPase z-alpha PF02295.17 gi|219852613|ref|YP_002467045.1| - 0.024 14.7 0.2 0.069 13.2 0.0 1.9 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain AAA_11 PF13086.6 gi|219852613|ref|YP_002467045.1| - 0.026 14.3 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|219852613|ref|YP_002467045.1| - 0.027 13.7 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|219852613|ref|YP_002467045.1| - 0.038 13.0 0.0 0.067 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|219852613|ref|YP_002467045.1| - 0.041 13.4 0.1 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|219852613|ref|YP_002467045.1| - 0.069 13.5 0.3 0.24 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain MCH PF02289.16 gi|219852614|ref|YP_002467046.1| - 2.5e-132 440.9 0.0 2.8e-132 440.7 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Nitro_FeMo-Co PF02579.17 gi|219852615|ref|YP_002467047.1| - 1.3e-18 67.1 0.1 1.6e-18 66.8 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|219852617|ref|YP_002467049.1| - 2.3e-18 66.3 0.1 2.9e-18 66.0 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.9 gi|219852618|ref|YP_002467050.1| - 1.2e-102 342.5 0.4 1.4e-102 342.3 0.4 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|219852618|ref|YP_002467050.1| - 2.4e-16 60.0 0.0 7.3e-16 58.4 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|219852618|ref|YP_002467050.1| - 1.5e-10 41.3 0.4 2.3e-09 37.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|219852618|ref|YP_002467050.1| - 7.2e-08 32.0 0.2 9.3e-08 31.7 0.2 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|219852618|ref|YP_002467050.1| - 2e-07 30.5 1.9 7.1e-06 25.4 0.2 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|219852618|ref|YP_002467050.1| - 3.5e-05 23.4 0.0 0.00059 19.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|219852618|ref|YP_002467050.1| - 0.00018 21.4 0.7 0.33 10.8 0.2 2.4 2 1 0 2 2 2 2 AAA domain CLP1_P PF16575.5 gi|219852618|ref|YP_002467050.1| - 0.0013 18.6 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|219852618|ref|YP_002467050.1| - 0.0013 18.6 0.0 0.0018 18.2 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|219852618|ref|YP_002467050.1| - 0.0016 18.0 0.5 0.033 13.7 0.4 2.0 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|219852618|ref|YP_002467050.1| - 0.0044 16.3 0.0 0.007 15.7 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|219852618|ref|YP_002467050.1| - 0.012 15.1 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|219852618|ref|YP_002467050.1| - 0.029 13.3 0.2 0.05 12.6 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|219852618|ref|YP_002467050.1| - 0.041 14.4 0.1 0.073 13.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|219852618|ref|YP_002467050.1| - 0.054 12.7 0.2 0.12 11.5 0.2 1.5 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.22 gi|219852618|ref|YP_002467050.1| - 0.15 11.7 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|219852618|ref|YP_002467050.1| - 0.17 11.1 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.10 gi|219852618|ref|YP_002467050.1| - 0.18 11.2 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|219852618|ref|YP_002467050.1| - 0.18 11.5 0.2 0.36 10.5 0.2 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|219852618|ref|YP_002467050.1| - 0.2 11.6 1.2 0.23 11.3 0.3 1.5 2 0 0 2 2 1 0 RsgA GTPase AAA_29 PF13555.6 gi|219852618|ref|YP_002467050.1| - 0.36 10.6 1.3 1.2 8.9 0.1 2.3 3 0 0 3 3 2 0 P-loop containing region of AAA domain Hydrolase_4 PF12146.8 gi|219852620|ref|YP_002467052.1| - 7.9e-06 25.3 0.2 8.2e-05 22.0 0.1 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|219852620|ref|YP_002467052.1| - 0.02 14.3 0.0 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF3634 PF12321.8 gi|219852621|ref|YP_002467053.1| - 0.11 12.9 0.0 0.12 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3634) MarR_2 PF12802.7 gi|219852623|ref|YP_002467055.1| - 0.012 15.5 0.8 0.025 14.4 0.0 2.0 2 0 0 2 2 2 0 MarR family AAA_22 PF13401.6 gi|219852623|ref|YP_002467055.1| - 0.062 13.6 0.0 0.81 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain DZR PF12773.7 gi|219852623|ref|YP_002467055.1| - 0.17 12.0 5.7 4.3 7.5 0.4 3.2 3 0 0 3 3 3 0 Double zinc ribbon TPR_MalT PF17874.1 gi|219852626|ref|YP_002467058.1| - 0.022 14.1 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 MalT-like TPR region PadR PF03551.14 gi|219852627|ref|YP_002467059.1| - 2.4e-08 33.8 0.0 3.9e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|219852627|ref|YP_002467059.1| - 0.002 18.0 0.3 0.014 15.4 0.2 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix Methyltransf_25 PF13649.6 gi|219852628|ref|YP_002467060.1| - 3.2e-22 79.0 0.0 1.1e-21 77.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219852628|ref|YP_002467060.1| - 1.1e-20 74.1 0.0 1.7e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852628|ref|YP_002467060.1| - 1.2e-17 64.1 0.0 1.5e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852628|ref|YP_002467060.1| - 1.1e-15 58.2 0.0 1.6e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|219852628|ref|YP_002467060.1| - 7.8e-13 48.6 0.0 1.7e-12 47.4 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|219852628|ref|YP_002467060.1| - 1.2e-12 48.0 0.0 1.5e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|219852628|ref|YP_002467060.1| - 4.9e-09 35.9 0.0 6.1e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|219852628|ref|YP_002467060.1| - 6.4e-08 32.2 0.0 7.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|219852628|ref|YP_002467060.1| - 3.6e-07 29.9 0.0 5.5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|219852628|ref|YP_002467060.1| - 6e-07 29.1 0.0 7.5e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|219852628|ref|YP_002467060.1| - 2.4e-06 27.3 0.0 2.9e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|219852628|ref|YP_002467060.1| - 7.8e-05 21.4 0.0 9.1e-05 21.2 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.6 gi|219852628|ref|YP_002467060.1| - 0.0022 18.0 0.0 0.0027 17.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|219852628|ref|YP_002467060.1| - 0.0067 16.6 0.0 0.031 14.4 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.13 gi|219852628|ref|YP_002467060.1| - 0.009 15.4 0.0 0.01 15.2 0.0 1.2 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 gi|219852628|ref|YP_002467060.1| - 0.045 13.2 0.0 0.65 9.4 0.0 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_8 PF05148.15 gi|219852628|ref|YP_002467060.1| - 0.051 13.4 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase TRM13 PF05206.14 gi|219852628|ref|YP_002467060.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase TRM13 DUF2113 PF09886.9 gi|219852628|ref|YP_002467060.1| - 0.15 11.4 0.0 0.33 10.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2113) zf-RRN7 PF11781.8 gi|219852629|ref|YP_002467061.1| - 0.0026 17.4 0.8 0.004 16.8 0.8 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF4428 PF14471.6 gi|219852629|ref|YP_002467061.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-FPG_IleRS PF06827.14 gi|219852629|ref|YP_002467061.1| - 0.024 14.5 1.0 0.04 13.8 1.0 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.12 gi|219852629|ref|YP_002467061.1| - 0.4 10.2 2.6 6.9 6.3 3.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Virulence_RhuM PF13310.6 gi|219852631|ref|YP_002467063.1| - 4.6e-118 393.0 4.2 6.1e-118 392.6 4.2 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family SIR2 PF02146.17 gi|219852632|ref|YP_002467064.1| - 0.2 11.6 0.0 0.31 10.9 0.0 1.4 2 0 0 2 2 2 0 Sir2 family TrkA_TMD PF18613.1 gi|219852632|ref|YP_002467064.1| - 0.41 10.1 4.7 3.4 7.2 0.8 2.5 2 0 0 2 2 2 0 Tyrosine kinase receptor A trans-membrane domain HEPN_Apea PF18739.1 gi|219852633|ref|YP_002467065.1| - 5.2e-05 23.6 0.1 0.0002 21.7 0.1 2.0 1 0 0 1 1 1 1 Apea-like HEPN DUF1016_N PF17761.1 gi|219852634|ref|YP_002467066.1| - 4.5e-40 137.0 0.0 5.7e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 DUF1016 N-terminal domain HTH_34 PF13601.6 gi|219852637|ref|YP_002467069.1| - 5.5e-19 68.1 0.0 7.8e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|219852637|ref|YP_002467069.1| - 2.4e-06 27.4 0.1 4e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|219852637|ref|YP_002467069.1| - 0.0029 17.6 0.2 0.0057 16.7 0.1 1.5 1 1 1 2 2 2 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|219852637|ref|YP_002467069.1| - 0.0064 16.6 0.0 0.0072 16.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|219852637|ref|YP_002467069.1| - 0.024 14.5 0.0 0.15 12.0 0.0 1.9 1 1 1 2 2 2 0 MarR family HTH_5 PF01022.20 gi|219852637|ref|YP_002467069.1| - 0.047 13.6 0.2 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|219852637|ref|YP_002467069.1| - 0.072 13.6 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Caps_synth_GfcC PF06251.11 gi|219852637|ref|YP_002467069.1| - 0.17 11.5 0.0 0.34 10.5 0.0 1.5 1 1 0 1 1 1 0 Capsule biosynthesis GfcC PemK_toxin PF02452.17 gi|219852639|ref|YP_002467071.1| - 1.5e-19 70.4 0.0 1.6e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system EVE PF01878.18 gi|219852640|ref|YP_002467072.1| - 4.7e-15 55.9 0.0 5.8e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 EVE domain HEPN PF05168.14 gi|219852643|ref|YP_002467075.1| - 0.006 16.7 1.3 0.025 14.7 1.3 2.0 1 1 0 1 1 1 1 HEPN domain DUF3242 PF11586.8 gi|219852644|ref|YP_002467076.1| - 0.1 12.3 0.4 0.27 11.0 0.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3242) ABC_tran PF00005.27 gi|219852645|ref|YP_002467077.1| - 7.1e-27 94.6 0.0 1.1e-26 94.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852645|ref|YP_002467077.1| - 4.9e-12 46.3 0.1 4.4e-08 33.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219852645|ref|YP_002467077.1| - 2.2e-11 44.3 0.0 3.7e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|219852645|ref|YP_002467077.1| - 0.0012 18.7 0.0 0.051 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|219852645|ref|YP_002467077.1| - 0.0024 18.4 0.0 0.0041 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|219852645|ref|YP_002467077.1| - 0.0035 16.8 0.0 0.84 9.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|219852645|ref|YP_002467077.1| - 0.0082 15.9 0.2 0.016 15.0 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|219852645|ref|YP_002467077.1| - 0.012 15.3 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KdpD PF02702.17 gi|219852645|ref|YP_002467077.1| - 0.014 14.8 0.1 0.036 13.5 0.0 1.7 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_16 PF13191.6 gi|219852645|ref|YP_002467077.1| - 0.028 14.8 0.1 0.066 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Phage_TAC_7 PF10109.9 gi|219852645|ref|YP_002467077.1| - 0.039 14.1 0.0 0.22 11.7 0.0 2.2 3 0 0 3 3 3 0 Phage tail assembly chaperone proteins, E, or 41 or 14 AAA PF00004.29 gi|219852645|ref|YP_002467077.1| - 0.071 13.5 0.3 0.53 10.7 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|219852645|ref|YP_002467077.1| - 0.14 12.2 0.1 0.49 10.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC2_membrane PF01061.24 gi|219852646|ref|YP_002467078.1| - 8.1e-30 103.8 20.9 8.1e-30 103.8 20.9 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219852646|ref|YP_002467078.1| - 2.5e-09 36.7 28.7 3.1e-09 36.4 28.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|219852646|ref|YP_002467078.1| - 8e-05 22.1 15.4 8e-05 22.1 15.4 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein TPR_1 PF00515.28 gi|219852647|ref|YP_002467079.1| - 8.9e-12 44.3 4.4 0.00023 20.8 3.1 3.2 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219852647|ref|YP_002467079.1| - 5.9e-10 38.5 2.2 0.0026 17.8 0.1 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|219852647|ref|YP_002467079.1| - 9e-08 31.8 1.5 0.026 14.7 0.0 3.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|219852647|ref|YP_002467079.1| - 1.6e-07 31.2 2.5 0.016 15.5 0.7 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219852647|ref|YP_002467079.1| - 1.4e-06 27.9 2.9 1.5e-05 24.6 0.1 2.9 2 1 1 3 3 3 1 TPR repeat TPR_9 PF13371.6 gi|219852647|ref|YP_002467079.1| - 0.0037 17.4 0.0 0.0076 16.4 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219852647|ref|YP_002467079.1| - 0.0038 17.1 0.0 0.19 11.9 0.0 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|219852647|ref|YP_002467079.1| - 0.012 14.5 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 TPR_16 PF13432.6 gi|219852647|ref|YP_002467079.1| - 0.022 15.4 0.0 0.073 13.7 0.0 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat lci PF12197.8 gi|219852647|ref|YP_002467079.1| - 0.037 13.8 2.3 0.19 11.5 0.1 2.3 2 0 0 2 2 2 0 Bacillus cereus group antimicrobial protein TPR_14 PF13428.6 gi|219852647|ref|YP_002467079.1| - 0.093 13.6 0.0 7.6 7.6 0.0 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|219852647|ref|YP_002467079.1| - 0.15 12.4 0.0 3.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat CS PF04969.16 gi|219852648|ref|YP_002467080.1| - 0.02 15.9 0.1 0.027 15.5 0.1 1.2 1 0 0 1 1 1 0 CS domain HTH_5 PF01022.20 gi|219852649|ref|YP_002467081.1| - 5.4e-13 48.6 1.4 3.2e-08 33.3 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|219852649|ref|YP_002467081.1| - 7.7e-09 35.5 0.5 6.2e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|219852649|ref|YP_002467081.1| - 1.6e-07 31.1 0.2 0.00059 19.7 0.0 2.4 2 0 0 2 2 2 2 MarR family Sulfolobus_pRN PF05584.11 gi|219852649|ref|YP_002467081.1| - 2.5e-05 24.2 0.0 6.2e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_24 PF13412.6 gi|219852649|ref|YP_002467081.1| - 8.8e-05 22.0 7.7 0.055 13.0 1.3 3.8 3 1 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|219852649|ref|YP_002467081.1| - 0.00012 21.9 3.6 0.078 13.0 0.3 2.9 2 2 0 2 2 2 2 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|219852649|ref|YP_002467081.1| - 0.00021 21.5 0.1 0.91 9.9 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.22 gi|219852649|ref|YP_002467081.1| - 0.0003 20.6 0.5 0.69 9.9 0.0 2.7 2 1 0 2 2 2 2 MarR family TrmB PF01978.19 gi|219852649|ref|YP_002467081.1| - 0.00054 19.8 0.0 0.029 14.3 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|219852649|ref|YP_002467081.1| - 0.0012 18.9 0.3 1.8 8.7 0.0 2.4 2 0 0 2 2 2 2 DprA winged helix domain PadR PF03551.14 gi|219852649|ref|YP_002467081.1| - 0.0017 18.2 0.5 3 7.9 0.1 2.9 2 1 0 2 2 2 2 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 gi|219852649|ref|YP_002467081.1| - 0.017 14.9 0.3 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain DUF4423 PF14394.6 gi|219852649|ref|YP_002467081.1| - 0.026 14.2 0.1 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|219852649|ref|YP_002467081.1| - 0.027 14.4 0.1 1.8 8.6 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|219852649|ref|YP_002467081.1| - 0.033 14.5 0.1 5.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Rio2_N PF09202.11 gi|219852649|ref|YP_002467081.1| - 0.04 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Rio2, N-terminal HemN_C PF06969.16 gi|219852649|ref|YP_002467081.1| - 0.051 13.6 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain TFIIE_alpha PF02002.17 gi|219852649|ref|YP_002467081.1| - 0.054 13.4 2.0 0.5 10.2 0.1 2.5 2 2 0 2 2 2 0 TFIIE alpha subunit ArsR PF09824.9 gi|219852649|ref|YP_002467081.1| - 0.056 13.1 0.0 3.4 7.2 0.0 2.2 2 1 0 2 2 2 0 ArsR transcriptional regulator HxlR PF01638.17 gi|219852649|ref|YP_002467081.1| - 0.093 12.6 0.7 12 5.8 0.0 2.5 2 1 1 3 3 3 0 HxlR-like helix-turn-helix ANAPC2 PF08672.11 gi|219852649|ref|YP_002467081.1| - 0.26 11.8 3.6 0.52 10.9 0.2 2.9 2 2 1 3 3 3 0 Anaphase promoting complex (APC) subunit 2 IMPDH PF00478.25 gi|219852650|ref|YP_002467082.1| - 1.2e-143 478.3 12.1 1.4e-143 478.1 12.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|219852650|ref|YP_002467082.1| - 2.8e-25 88.5 4.4 4.9e-12 46.1 0.1 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|219852650|ref|YP_002467082.1| - 1.1e-10 41.4 5.4 3.4e-06 26.7 3.4 2.9 3 0 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|219852650|ref|YP_002467082.1| - 1.5e-07 30.8 3.7 8.4e-07 28.3 4.1 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|219852650|ref|YP_002467082.1| - 6.1e-05 22.3 9.4 0.00011 21.5 9.4 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|219852650|ref|YP_002467082.1| - 0.00076 18.9 2.9 0.0022 17.3 2.9 1.8 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|219852650|ref|YP_002467082.1| - 0.0034 16.9 4.0 0.0045 16.5 0.3 2.5 2 1 1 3 3 3 1 Histidine biosynthesis protein 4HFCP_synth PF04476.13 gi|219852651|ref|YP_002467083.1| - 1.7e-81 273.3 0.0 2e-81 273.1 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase His_biosynth PF00977.21 gi|219852652|ref|YP_002467084.1| - 1.2e-18 67.5 0.0 1.7e-17 63.7 0.0 2.0 1 1 0 1 1 1 1 Histidine biosynthesis protein Thymidylate_kin PF02223.17 gi|219852653|ref|YP_002467085.1| - 1.3e-41 142.4 0.0 1.5e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|219852653|ref|YP_002467085.1| - 0.00015 22.1 0.0 0.00045 20.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|219852653|ref|YP_002467085.1| - 0.00057 19.8 0.0 0.0056 16.6 0.0 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_22 PF13401.6 gi|219852653|ref|YP_002467085.1| - 0.0037 17.6 0.0 0.12 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|219852653|ref|YP_002467085.1| - 0.0038 17.6 0.0 0.0067 16.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain BatA PF07584.11 gi|219852653|ref|YP_002467085.1| - 0.047 14.1 0.2 0.078 13.4 0.2 1.4 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal MMR_HSR1 PF01926.23 gi|219852653|ref|YP_002467085.1| - 0.086 12.9 0.0 0.88 9.7 0.0 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|219852653|ref|YP_002467085.1| - 0.094 13.3 0.0 0.15 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|219852653|ref|YP_002467085.1| - 0.13 12.4 0.2 1.6 8.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain tRNA-synt_1 PF00133.22 gi|219852654|ref|YP_002467086.1| - 2.6e-127 425.6 0.2 4e-126 421.7 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|219852654|ref|YP_002467086.1| - 2e-32 112.2 0.0 4.4e-32 111.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|219852654|ref|YP_002467086.1| - 1.8e-24 86.3 0.2 6.2e-14 51.6 0.0 3.5 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|219852654|ref|YP_002467086.1| - 0.00021 20.8 0.0 0.75 9.1 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|219852654|ref|YP_002467086.1| - 0.00069 19.2 0.0 0.0018 17.8 0.0 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.7 gi|219852654|ref|YP_002467086.1| - 0.015 15.3 4.4 0.21 11.6 0.2 3.3 3 0 0 3 3 3 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|219852654|ref|YP_002467086.1| - 0.039 13.8 2.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|219852654|ref|YP_002467086.1| - 0.52 9.9 3.8 5 6.7 0.2 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|219852654|ref|YP_002467086.1| - 0.74 9.5 7.9 2.8 7.6 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|219852654|ref|YP_002467086.1| - 7 6.9 5.8 4.2 7.6 2.4 2.5 2 1 0 2 2 2 0 Zinc ribbon domain DUF92 PF01940.16 gi|219852655|ref|YP_002467087.1| - 6.8e-54 182.8 16.5 6.8e-54 182.8 16.5 2.6 3 0 0 3 3 3 1 Integral membrane protein DUF92 PKD PF00801.20 gi|219852656|ref|YP_002467088.1| - 3.4e-34 116.5 42.8 1.9e-13 50.1 3.0 6.1 6 0 0 6 6 6 4 PKD domain CBM_6 PF03422.15 gi|219852656|ref|YP_002467088.1| - 2e-26 92.7 1.3 2e-26 92.7 1.3 4.3 3 1 1 4 4 4 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852656|ref|YP_002467088.1| - 7.7e-14 51.8 0.2 4.6e-13 49.3 0.1 2.4 2 0 0 2 2 2 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219852656|ref|YP_002467088.1| - 4e-05 23.9 0.3 4e-05 23.9 0.3 3.8 3 1 2 5 5 5 1 Carbohydrate binding module (family 35) PKD_3 PF16820.5 gi|219852656|ref|YP_002467088.1| - 0.00011 21.9 9.4 0.11 12.2 0.1 4.6 5 0 0 5 5 5 2 PKD-like domain ThiC-associated PF13667.6 gi|219852656|ref|YP_002467088.1| - 0.0094 15.7 5.2 0.47 10.3 0.1 4.4 4 0 0 4 4 4 1 ThiC-associated domain PMP1_2 PF08114.11 gi|219852656|ref|YP_002467088.1| - 0.23 11.2 2.7 0.51 10.1 2.7 1.5 1 0 0 1 1 1 0 ATPase proteolipid family PKD PF00801.20 gi|219852657|ref|YP_002467089.1| - 4.8e-30 103.2 35.9 2.2e-13 49.9 1.7 5.9 6 0 0 6 6 6 3 PKD domain CBM_6 PF03422.15 gi|219852657|ref|YP_002467089.1| - 2.9e-27 95.5 1.4 2.9e-27 95.5 1.4 3.5 3 1 1 4 4 4 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852657|ref|YP_002467089.1| - 1.6e-13 50.8 2.3 3.5e-13 49.7 0.1 2.5 2 0 0 2 2 2 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219852657|ref|YP_002467089.1| - 1.7e-05 25.1 0.3 1.7e-05 25.1 0.3 2.8 2 1 0 2 2 2 1 Carbohydrate binding module (family 35) PKD_3 PF16820.5 gi|219852657|ref|YP_002467089.1| - 3.7e-05 23.4 6.4 0.12 12.2 0.1 4.4 4 0 0 4 4 4 2 PKD-like domain PKD PF00801.20 gi|219852658|ref|YP_002467090.1| - 1e-68 227.1 106.7 3.9e-11 42.6 5.0 10.8 10 1 1 11 11 11 8 PKD domain CBM_6 PF03422.15 gi|219852658|ref|YP_002467090.1| - 1.6e-26 93.0 1.3 1.6e-26 93.0 1.3 7.4 6 2 2 8 8 8 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852658|ref|YP_002467090.1| - 2.7e-14 53.2 1.2 2.1e-13 50.4 0.1 3.2 2 0 0 2 2 2 1 DUF5010 C-terminal domain PKD_3 PF16820.5 gi|219852658|ref|YP_002467090.1| - 0.00056 19.6 25.3 1.1 9.0 0.1 8.5 9 0 0 9 9 9 4 PKD-like domain MG2 PF01835.19 gi|219852658|ref|YP_002467090.1| - 0.0068 16.8 20.2 9.9 6.7 0.1 7.4 6 2 1 7 7 7 1 MG2 domain Y_Y_Y PF07495.13 gi|219852658|ref|YP_002467090.1| - 0.012 15.6 24.8 0.21 11.6 0.6 6.7 7 0 0 7 7 7 0 Y_Y_Y domain PKD PF00801.20 gi|219852660|ref|YP_002467092.1| - 1.8e-33 114.2 39.4 7.8e-13 48.1 3.2 5.8 5 0 0 5 5 5 4 PKD domain CBM_6 PF03422.15 gi|219852660|ref|YP_002467092.1| - 3.3e-27 95.2 1.3 3.3e-27 95.2 1.3 5.0 5 2 1 6 6 6 2 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852660|ref|YP_002467092.1| - 1.4e-14 54.1 9.3 2e-13 50.4 0.2 3.7 3 1 0 3 3 3 2 DUF5010 C-terminal domain CarbopepD_reg_2 PF13715.6 gi|219852660|ref|YP_002467092.1| - 1.6e-07 31.3 13.6 0.0029 17.6 0.2 5.1 5 1 0 5 5 5 2 CarboxypepD_reg-like domain CBM_35 PF16990.5 gi|219852660|ref|YP_002467092.1| - 2.5e-05 24.5 0.5 2.5e-05 24.5 0.5 3.4 3 2 0 3 3 3 1 Carbohydrate binding module (family 35) PKD_3 PF16820.5 gi|219852660|ref|YP_002467092.1| - 4.7e-05 23.0 9.2 0.14 11.9 0.2 4.8 5 0 0 5 5 5 2 PKD-like domain PEGA PF08308.11 gi|219852660|ref|YP_002467092.1| - 0.00082 19.2 14.3 0.0027 17.5 1.2 4.9 5 0 0 5 5 5 2 PEGA domain ThiC-associated PF13667.6 gi|219852660|ref|YP_002467092.1| - 0.015 15.1 8.9 0.44 10.4 0.1 4.5 4 0 0 4 4 4 0 ThiC-associated domain MetallophosN PF16371.5 gi|219852660|ref|YP_002467092.1| - 0.042 14.1 6.7 0.26 11.6 0.2 3.7 3 0 0 3 3 3 0 N terminal of Calcineurin-like phosphoesterase CarboxypepD_reg PF13620.6 gi|219852661|ref|YP_002467093.1| - 1.3e-46 156.7 85.4 7.6e-09 35.7 0.3 12.7 13 1 0 13 13 13 7 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|219852661|ref|YP_002467093.1| - 2.5e-31 107.5 40.5 4.5e-06 26.6 0.1 9.6 9 0 0 9 9 8 6 CarboxypepD_reg-like domain PKD PF00801.20 gi|219852661|ref|YP_002467093.1| - 1.1e-26 92.4 61.8 3.5e-14 52.4 2.4 7.7 8 1 0 8 8 6 4 PKD domain CBM_6 PF03422.15 gi|219852661|ref|YP_002467093.1| - 8e-25 87.6 1.6 8e-25 87.6 1.6 7.8 10 0 0 10 10 10 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852661|ref|YP_002467093.1| - 2.9e-13 49.9 3.5 4.4e-13 49.3 0.2 3.0 2 0 0 2 2 2 1 DUF5010 C-terminal domain UPF0560 PF10577.9 gi|219852661|ref|YP_002467093.1| - 8.6e-08 31.2 18.7 0.21 10.1 0.2 5.8 6 0 0 6 6 6 4 Uncharacterised protein family UPF0560 YtkA PF13115.6 gi|219852661|ref|YP_002467093.1| - 7.3e-07 29.7 10.4 4.1 8.1 0.0 8.9 10 0 0 10 10 9 1 YtkA-like DUF3244 PF11589.8 gi|219852661|ref|YP_002467093.1| - 8.5e-05 22.6 24.9 0.37 10.9 0.2 8.7 8 0 0 8 8 8 1 Domain of unknown function (DUF3244) Y_Y_Y PF07495.13 gi|219852661|ref|YP_002467093.1| - 0.00087 19.2 12.1 0.089 12.8 0.8 4.8 4 0 0 4 4 4 2 Y_Y_Y domain Big_1 PF02369.16 gi|219852661|ref|YP_002467093.1| - 0.0014 18.6 0.2 0.0014 18.6 0.2 13.7 14 2 0 14 14 10 6 Bacterial Ig-like domain (group 1) Ribosomal_S21e PF01249.18 gi|219852661|ref|YP_002467093.1| - 0.0052 16.9 0.1 1.3e+02 2.8 0.0 4.9 5 0 0 5 5 4 0 Ribosomal protein S21e BTB_3 PF16017.5 gi|219852661|ref|YP_002467093.1| - 0.086 13.0 2.4 3.5 7.8 0.0 3.9 5 0 0 5 5 4 0 BTB/POZ domain SecG PF03840.14 gi|219852661|ref|YP_002467093.1| - 0.14 12.3 1.8 0.31 11.1 1.8 1.7 1 0 0 1 1 1 0 Preprotein translocase SecG subunit SnoaL PF07366.12 gi|219852661|ref|YP_002467093.1| - 0.54 10.1 7.7 29 4.5 0.0 5.3 6 0 0 6 6 6 0 SnoaL-like polyketide cyclase DUF4625 PF15418.6 gi|219852661|ref|YP_002467093.1| - 0.76 10.0 4.8 4.8 7.4 0.0 4.3 5 0 0 5 5 5 0 Domain of unknown function (DUF4625) FTP PF07504.13 gi|219852661|ref|YP_002467093.1| - 3.7 7.5 7.4 14 5.6 0.1 5.7 5 1 0 5 5 5 0 Fungalysin/Thermolysin Propeptide Motif NHL PF01436.21 gi|219852663|ref|YP_002467095.1| - 4.2e-55 181.1 14.7 2.9e-11 42.8 0.2 7.0 6 1 0 6 6 6 6 NHL repeat SGL PF08450.12 gi|219852663|ref|YP_002467095.1| - 2.8e-23 82.8 6.9 1.7e-05 24.6 0.1 5.3 2 1 2 5 5 5 5 SMP-30/Gluconolactonase/LRE-like region Phytase-like PF13449.6 gi|219852663|ref|YP_002467095.1| - 2.9e-12 47.1 0.7 0.047 13.6 0.0 5.8 2 2 1 5 5 5 3 Esterase-like activity of phytase SBBP PF06739.11 gi|219852663|ref|YP_002467095.1| - 1.1e-09 38.2 37.0 0.0013 18.7 0.3 6.9 7 1 0 7 7 7 4 Beta-propeller repeat DUF5128 PF17170.4 gi|219852663|ref|YP_002467095.1| - 1.5e-08 34.2 3.5 0.013 14.7 0.7 4.0 1 1 3 4 4 4 4 6-bladed beta-propeller Arylesterase PF01731.20 gi|219852663|ref|YP_002467095.1| - 2.6e-07 30.8 1.6 2.7 8.3 0.0 5.9 6 0 0 6 6 6 1 Arylesterase DUF839 PF05787.13 gi|219852663|ref|YP_002467095.1| - 1.1e-06 28.2 7.9 0.00038 19.7 2.4 3.5 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF839) Tachylectin PF14517.6 gi|219852663|ref|YP_002467095.1| - 7.8e-06 25.6 8.9 0.0047 16.5 1.1 2.3 1 1 1 2 2 2 2 Tachylectin Dockerin_1 PF00404.18 gi|219852663|ref|YP_002467095.1| - 5.5e-05 23.3 0.6 5.5e-05 23.3 0.6 2.5 3 0 0 3 3 2 1 Dockerin type I domain US22 PF02393.16 gi|219852663|ref|YP_002467095.1| - 0.00011 22.5 0.0 3.9 7.8 0.0 4.7 4 1 0 5 5 5 1 US22 like SdiA-regulated PF06977.11 gi|219852663|ref|YP_002467095.1| - 0.0002 20.7 1.6 3.4 6.8 0.0 4.5 3 2 1 5 5 5 2 SdiA-regulated Ldl_recept_b PF00058.17 gi|219852663|ref|YP_002467095.1| - 0.0025 18.3 0.0 18 5.9 0.0 4.9 5 0 0 5 5 5 0 Low-density lipoprotein receptor repeat class B EF-hand_6 PF13405.6 gi|219852663|ref|YP_002467095.1| - 0.048 13.6 2.5 4.5 7.5 0.1 3.0 2 1 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|219852663|ref|YP_002467095.1| - 0.16 11.6 6.7 1.6 8.4 0.1 2.9 3 0 0 3 3 3 0 EF hand Arch_fla_DE PF04659.13 gi|219852663|ref|YP_002467095.1| - 0.22 11.4 0.0 0.41 10.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal flagella protein PsbR PF04725.12 gi|219852663|ref|YP_002467095.1| - 4.7 7.6 9.4 25 5.3 0.3 4.4 4 1 1 5 5 4 0 Photosystem II 10 kDa polypeptide PsbR NDUF_B12 PF08122.12 gi|219852664|ref|YP_002467096.1| - 0.028 14.4 1.9 0.15 12.1 0.1 3.0 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF2921 PF11145.8 gi|219852664|ref|YP_002467096.1| - 1.5 6.5 4.3 1.7 6.4 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2921) PK_C PF02887.16 gi|219852665|ref|YP_002467097.1| - 1.2e-13 51.3 2.8 1.6e-13 50.9 2.8 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PALP PF00291.25 gi|219852665|ref|YP_002467097.1| - 0.021 14.2 5.6 0.034 13.6 5.6 1.3 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DUF362 PF04015.12 gi|219852666|ref|YP_002467098.1| - 3.2e-43 148.4 0.0 3.8e-43 148.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_21 PF14697.6 gi|219852666|ref|YP_002467098.1| - 6e-12 45.5 32.1 1.7e-07 31.3 12.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852666|ref|YP_002467098.1| - 1.1e-10 40.9 12.6 1.7e-05 24.4 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219852666|ref|YP_002467098.1| - 2.6e-10 39.9 13.1 2.4e-06 27.3 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852666|ref|YP_002467098.1| - 8.1e-09 35.9 21.5 9.9e-08 32.5 10.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852666|ref|YP_002467098.1| - 1e-08 35.9 5.8 0.0016 19.3 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219852666|ref|YP_002467098.1| - 1.2e-08 35.0 10.5 2.3e-08 34.1 10.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852666|ref|YP_002467098.1| - 1.7e-08 34.4 21.5 1.6e-05 24.9 12.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219852666|ref|YP_002467098.1| - 9e-08 31.8 12.3 0.00092 19.2 3.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219852666|ref|YP_002467098.1| - 3.6e-05 24.1 4.5 0.024 15.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852666|ref|YP_002467098.1| - 0.00029 21.1 12.2 0.094 13.3 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|219852666|ref|YP_002467098.1| - 0.00031 21.5 18.3 0.033 15.1 4.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219852666|ref|YP_002467098.1| - 0.00081 19.9 12.2 0.068 13.7 2.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219852666|ref|YP_002467098.1| - 0.0065 17.2 12.6 0.21 12.3 3.5 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Lar_N PF09861.9 gi|219852666|ref|YP_002467098.1| - 0.0096 15.1 0.5 0.015 14.4 0.5 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_13 PF13370.6 gi|219852666|ref|YP_002467098.1| - 0.037 14.6 10.7 1.1 9.9 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 gi|219852666|ref|YP_002467098.1| - 0.037 14.1 2.3 0.067 13.3 2.3 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219852666|ref|YP_002467098.1| - 0.045 13.9 9.0 0.11 12.7 9.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219852666|ref|YP_002467098.1| - 0.5 11.3 9.9 4.2 8.3 1.2 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain AIM24 PF01987.17 gi|219852667|ref|YP_002467099.1| - 1.6e-63 214.1 3.9 1.9e-63 213.9 3.9 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 PPDK_N PF01326.19 gi|219852668|ref|YP_002467100.1| - 2e-103 346.1 0.1 2.9e-103 345.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|219852668|ref|YP_002467100.1| - 1.1e-82 277.4 0.0 1.8e-82 276.8 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|219852668|ref|YP_002467100.1| - 8.4e-27 92.7 1.4 2.7e-26 91.1 1.4 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Pyridoxal_deC PF00282.19 gi|219852669|ref|YP_002467101.1| - 5.9e-28 97.6 0.0 1.6e-27 96.2 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|219852669|ref|YP_002467101.1| - 1.3e-12 47.4 0.0 9.5e-12 44.5 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|219852669|ref|YP_002467101.1| - 1.1e-05 24.8 0.0 2.5e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|219852669|ref|YP_002467101.1| - 4.8e-05 22.8 0.1 7.1e-05 22.3 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|219852669|ref|YP_002467101.1| - 0.024 13.4 0.0 0.039 12.7 0.0 1.3 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|219852669|ref|YP_002467101.1| - 0.038 13.3 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|219852669|ref|YP_002467101.1| - 0.14 10.7 0.0 0.84 8.1 0.0 1.8 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Pribosyltran PF00156.27 gi|219852670|ref|YP_002467102.1| - 7.8e-13 48.2 0.6 9.9e-13 47.9 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|219852670|ref|YP_002467102.1| - 0.0019 17.7 0.1 0.0024 17.3 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|219852670|ref|YP_002467102.1| - 0.029 13.9 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Diphthamide_syn PF01866.17 gi|219852671|ref|YP_002467103.1| - 8.9e-69 232.2 0.0 1e-68 232.0 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.14 gi|219852672|ref|YP_002467104.1| - 8.1e-19 67.8 0.0 1.1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|219852672|ref|YP_002467104.1| - 1e-14 55.0 0.0 1.8e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|219852672|ref|YP_002467104.1| - 1.3e-14 54.3 0.1 1.7e-14 53.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|219852672|ref|YP_002467104.1| - 4.5e-14 52.5 0.0 7e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|219852672|ref|YP_002467104.1| - 2.1e-11 43.9 0.9 2.6e-10 40.3 0.9 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|219852672|ref|YP_002467104.1| - 5.7e-10 39.7 0.0 1e-09 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|219852672|ref|YP_002467104.1| - 1.7e-09 37.5 0.0 2.5e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|219852672|ref|YP_002467104.1| - 1.4e-07 32.1 0.0 2.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|219852672|ref|YP_002467104.1| - 3.2e-06 26.5 0.0 4.4e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_23 PF13489.6 gi|219852672|ref|YP_002467104.1| - 6.5e-06 26.1 0.0 8.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|219852672|ref|YP_002467104.1| - 3.7e-05 23.7 0.0 4.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|219852672|ref|YP_002467104.1| - 0.00014 21.3 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|219852672|ref|YP_002467104.1| - 0.00059 19.4 0.0 0.00086 18.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|219852672|ref|YP_002467104.1| - 0.0009 19.0 0.0 0.001 18.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|219852672|ref|YP_002467104.1| - 0.0027 16.7 0.0 0.0037 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|219852672|ref|YP_002467104.1| - 0.0027 17.3 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|219852672|ref|YP_002467104.1| - 0.0056 16.0 0.0 0.0083 15.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|219852672|ref|YP_002467104.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) CMAS PF02353.20 gi|219852672|ref|YP_002467104.1| - 0.038 13.3 0.0 0.078 12.3 0.0 1.5 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|219852672|ref|YP_002467104.1| - 0.038 13.7 0.0 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DNA_methylase PF00145.17 gi|219852672|ref|YP_002467104.1| - 0.091 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DOT1 PF08123.13 gi|219852672|ref|YP_002467104.1| - 0.17 11.4 0.1 0.26 10.8 0.1 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_16 PF10294.9 gi|219852672|ref|YP_002467104.1| - 0.24 11.1 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase MFS_1 PF07690.16 gi|219852673|ref|YP_002467105.1| - 1.2e-36 126.4 40.6 1.2e-36 126.4 40.6 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219852673|ref|YP_002467105.1| - 2.8e-06 26.5 24.9 0.00014 20.8 7.5 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|219852673|ref|YP_002467105.1| - 0.0057 15.0 1.1 0.0057 15.0 1.1 3.0 3 1 1 4 4 4 2 Organic Anion Transporter Polypeptide (OATP) family CorA PF01544.18 gi|219852674|ref|YP_002467106.1| - 3.3e-71 240.0 2.1 4.2e-71 239.6 2.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF2207 PF09972.9 gi|219852674|ref|YP_002467106.1| - 0.12 11.1 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4049 PF13258.6 gi|219852674|ref|YP_002467106.1| - 0.17 11.0 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4049) TrbC PF04956.13 gi|219852674|ref|YP_002467106.1| - 0.43 10.8 2.8 0.71 10.1 2.8 1.3 1 0 0 1 1 1 0 TrbC/VIRB2 family Pyridox_ox_2 PF12900.7 gi|219852675|ref|YP_002467107.1| - 6.4e-24 84.5 0.0 7.4e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|219852675|ref|YP_002467107.1| - 0.0044 17.2 0.0 0.0061 16.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1616 PF07760.11 gi|219852676|ref|YP_002467108.1| - 6.7e-38 130.7 0.4 7.4e-38 130.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) FtsH_ext PF06480.15 gi|219852676|ref|YP_002467108.1| - 0.053 13.9 0.5 0.097 13.0 0.5 1.5 1 1 0 1 1 1 0 FtsH Extracellular FixG_C PF11614.8 gi|219852676|ref|YP_002467108.1| - 0.073 13.3 0.7 0.11 12.7 0.7 1.2 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase GATase PF00117.28 gi|219852677|ref|YP_002467109.1| - 1.3e-22 80.5 0.0 1.5e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|219852677|ref|YP_002467109.1| - 5e-06 26.2 0.0 7.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|219852677|ref|YP_002467109.1| - 0.00026 20.8 0.2 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 Peptidase C26 SNO PF01174.19 gi|219852677|ref|YP_002467109.1| - 0.0023 17.8 0.0 0.042 13.7 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family PAPS_reduct PF01507.19 gi|219852678|ref|YP_002467110.1| - 2e-43 148.4 0.0 2.7e-43 148.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|219852678|ref|YP_002467110.1| - 2.3e-16 59.5 0.3 3.9e-16 58.8 0.3 1.3 1 0 0 1 1 1 1 PUA domain Radical_SAM PF04055.21 gi|219852679|ref|YP_002467111.1| - 1.3e-13 51.7 0.6 1.8e-13 51.2 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|219852679|ref|YP_002467111.1| - 3.5e-05 24.2 0.6 7e-05 23.3 0.6 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|219852679|ref|YP_002467111.1| - 0.0039 17.5 0.0 0.0098 16.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219852679|ref|YP_002467111.1| - 0.0055 16.8 0.0 0.0096 16.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TFIIS_C PF01096.18 gi|219852680|ref|YP_002467112.1| - 3.2e-18 65.3 10.2 1.1e-17 63.5 3.1 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|219852680|ref|YP_002467112.1| - 5.6e-09 35.7 8.5 1.8e-07 30.9 0.3 3.1 3 0 0 3 3 3 2 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|219852680|ref|YP_002467112.1| - 1.9e-05 24.5 8.3 0.023 14.6 0.9 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|219852680|ref|YP_002467112.1| - 9.6e-05 21.7 8.8 0.0081 15.5 0.8 3.3 3 0 0 3 3 3 2 zinc-ribbon domain TackOD1 PF18551.1 gi|219852680|ref|YP_002467112.1| - 0.00022 20.9 6.6 0.047 13.4 4.6 2.7 1 1 1 2 2 2 1 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|219852680|ref|YP_002467112.1| - 0.0016 18.4 6.3 0.052 13.5 0.4 2.4 2 1 0 2 2 2 2 zinc-ribbons zf-Mss51 PF13824.6 gi|219852680|ref|YP_002467112.1| - 0.0018 18.4 2.1 0.7 10.0 0.1 2.4 2 0 0 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.13 gi|219852680|ref|YP_002467112.1| - 0.0021 17.7 7.1 0.75 9.5 1.2 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.12 gi|219852680|ref|YP_002467112.1| - 0.0032 17.4 2.2 0.15 12.1 0.3 2.5 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger OrfB_Zn_ribbon PF07282.11 gi|219852680|ref|YP_002467112.1| - 0.0045 16.9 7.6 0.5 10.3 0.4 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|219852680|ref|YP_002467112.1| - 0.0055 16.7 8.5 0.092 12.8 0.6 2.9 2 1 1 3 3 3 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|219852680|ref|YP_002467112.1| - 0.015 14.8 11.8 0.054 13.0 0.5 3.4 2 2 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|219852680|ref|YP_002467112.1| - 0.025 14.6 12.5 1.8 8.7 0.2 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Baculo_LEF5_C PF11792.8 gi|219852680|ref|YP_002467112.1| - 0.027 14.1 0.1 0.027 14.1 0.1 2.2 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_4 PF13717.6 gi|219852680|ref|YP_002467112.1| - 0.03 14.2 15.2 5.5 7.0 0.4 4.2 3 1 0 3 3 3 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|219852680|ref|YP_002467112.1| - 0.049 13.4 6.6 3.5 7.4 0.1 3.4 3 1 0 3 3 3 0 Ribosomal protein S27 Terminase_GpA PF05876.12 gi|219852680|ref|YP_002467112.1| - 0.052 12.1 5.6 0.013 14.1 2.4 1.6 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) DUF2387 PF09526.10 gi|219852680|ref|YP_002467112.1| - 0.074 13.2 1.1 0.074 13.2 1.1 2.9 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Hepsin-SRCR PF09272.10 gi|219852680|ref|YP_002467112.1| - 0.092 13.3 0.8 0.27 11.8 0.8 1.9 1 1 0 1 1 1 0 Hepsin, SRCR domain zf-TFIIB PF13453.6 gi|219852680|ref|YP_002467112.1| - 0.11 11.9 0.3 0.11 11.9 0.3 2.8 2 1 0 2 2 2 0 Transcription factor zinc-finger Nudix_N_2 PF14803.6 gi|219852680|ref|YP_002467112.1| - 0.11 12.4 6.4 25 4.9 0.4 3.7 3 1 0 3 3 3 0 Nudix N-terminal zf-ZPR1 PF03367.13 gi|219852680|ref|YP_002467112.1| - 0.15 11.9 4.7 0.17 11.8 0.1 2.3 2 1 0 2 2 2 0 ZPR1 zinc-finger domain RPA_interact_C PF14768.6 gi|219852680|ref|YP_002467112.1| - 0.16 12.5 5.9 4.7 7.8 5.9 2.3 1 1 0 1 1 1 0 Replication protein A interacting C-terminal HypA PF01155.19 gi|219852680|ref|YP_002467112.1| - 0.19 11.8 8.6 0.76 9.8 0.7 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|219852680|ref|YP_002467112.1| - 0.19 11.8 19.0 0.59 10.3 0.2 4.1 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 CxC5 PF18718.1 gi|219852680|ref|YP_002467112.1| - 0.23 11.5 2.7 0.16 12.1 0.6 2.1 1 1 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases zinc_ribbon_13 PF09855.9 gi|219852680|ref|YP_002467112.1| - 0.25 11.5 4.2 26 5.1 0.0 3.5 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Mu-like_Com PF10122.9 gi|219852680|ref|YP_002467112.1| - 0.41 10.1 8.1 6 6.4 2.1 3.5 3 1 0 3 3 3 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.10 gi|219852680|ref|YP_002467112.1| - 0.63 10.2 13.2 2.3 8.4 0.0 4.1 3 1 0 4 4 4 0 Zinc ribbon domain CpXC PF14353.6 gi|219852680|ref|YP_002467112.1| - 0.88 9.6 10.9 0.86 9.7 1.1 3.5 1 1 2 3 3 3 0 CpXC protein Rpr2 PF04032.16 gi|219852680|ref|YP_002467112.1| - 2.1 8.7 6.5 1.6e+02 2.6 6.5 2.8 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rubredoxin PF00301.20 gi|219852680|ref|YP_002467112.1| - 2.9 8.0 11.7 9.4 6.4 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin zf-C4_Topoisom PF01396.19 gi|219852680|ref|YP_002467112.1| - 3.3 7.6 12.2 4 7.3 0.1 3.4 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger PADR1 PF08063.12 gi|219852680|ref|YP_002467112.1| - 3.3 7.5 7.8 10 6.0 1.1 2.9 3 0 0 3 3 3 0 PADR1 (NUC008) domain zf_UBZ PF18439.1 gi|219852680|ref|YP_002467112.1| - 4.7 6.9 12.2 13 5.5 0.1 3.9 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 gi|219852680|ref|YP_002467112.1| - 5.9 7.7 10.9 2.2 9.1 3.7 2.8 1 1 0 2 2 2 0 zinc-ribbon family Rubredoxin_2 PF18073.1 gi|219852680|ref|YP_002467112.1| - 6.6 6.6 18.0 8 6.3 0.8 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Opy2 PF09463.10 gi|219852680|ref|YP_002467112.1| - 7 7.1 9.0 16 5.9 0.6 3.1 3 0 0 3 3 3 0 Opy2 protein A2L_zn_ribbon PF08792.10 gi|219852680|ref|YP_002467112.1| - 9.5 6.1 13.4 32 4.4 3.2 3.8 2 2 1 3 3 3 0 A2L zinc ribbon domain Exosortase_EpsH PF09721.10 gi|219852681|ref|YP_002467113.1| - 8.1e-09 35.4 19.0 1.5e-08 34.5 19.0 1.5 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) CDP-OH_P_transf PF01066.21 gi|219852682|ref|YP_002467114.1| - 1.3e-13 51.5 1.5 1.3e-13 51.5 1.5 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase ECSCR PF15820.5 gi|219852682|ref|YP_002467114.1| - 2.9 7.7 5.6 5.5 6.9 0.0 2.2 1 1 1 2 2 2 0 Endothelial cell-specific chemotaxis regulator RibD_C PF01872.17 gi|219852683|ref|YP_002467115.1| - 1.8e-42 145.5 0.1 2e-42 145.3 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain IFRD PF05004.13 gi|219852683|ref|YP_002467115.1| - 0.22 10.6 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Interferon-related developmental regulator (IFRD) Peptidase_S49 PF01343.18 gi|219852684|ref|YP_002467116.1| - 1.1e-33 116.4 0.1 1.5e-33 116.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|219852684|ref|YP_002467116.1| - 1.2e-05 25.2 0.1 0.00062 19.7 0.1 2.2 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|219852684|ref|YP_002467116.1| - 0.0059 15.7 0.5 0.0059 15.7 0.5 1.7 1 1 1 2 2 2 1 Serine dehydrogenase proteinase Peptidase_S49_N PF08496.10 gi|219852684|ref|YP_002467116.1| - 0.61 10.1 2.2 14 5.7 0.0 2.3 2 0 0 2 2 2 0 Peptidase family S49 N-terminal TruD PF01142.18 gi|219852685|ref|YP_002467117.1| - 3.9e-136 454.2 0.0 4.4e-136 454.0 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|219852686|ref|YP_002467118.1| - 6.4e-37 126.4 0.2 7.2e-37 126.3 0.2 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 CxxCxxCC PF03692.15 gi|219852687|ref|YP_002467119.1| - 9.5e-10 39.0 2.7 3e-09 37.4 2.7 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TBP PF00352.21 gi|219852688|ref|YP_002467120.1| - 5.7e-46 154.4 0.3 7.9e-25 86.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|219852688|ref|YP_002467120.1| - 1.9e-07 31.1 0.0 0.0046 17.0 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DEAD PF00270.29 gi|219852689|ref|YP_002467121.1| - 6.7e-29 100.9 0.0 1.2e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|219852689|ref|YP_002467121.1| - 2.8e-24 86.0 0.0 5.7e-24 85.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|219852689|ref|YP_002467121.1| - 4.1e-18 65.7 0.0 2e-17 63.5 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|219852689|ref|YP_002467121.1| - 9.8e-07 28.9 0.0 2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|219852689|ref|YP_002467121.1| - 0.0067 16.4 0.1 0.055 13.5 0.0 2.5 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_22 PF13401.6 gi|219852689|ref|YP_002467121.1| - 0.012 15.9 0.1 3.9 7.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain zf-ribbon_3 PF13248.6 gi|219852689|ref|YP_002467121.1| - 0.02 14.3 0.3 0.054 12.9 0.3 1.8 1 0 0 1 1 1 0 zinc-ribbon domain SNF2_N PF00176.23 gi|219852689|ref|YP_002467121.1| - 0.029 13.1 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|219852689|ref|YP_002467121.1| - 0.17 12.2 0.1 0.9 9.9 0.1 2.2 1 1 0 1 1 1 0 AAA domain Metallophos_2 PF12850.7 gi|219852690|ref|YP_002467122.1| - 2.9e-07 30.8 0.1 4.8e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|219852690|ref|YP_002467122.1| - 2.6e-06 28.1 0.2 5.7e-06 27.0 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|219852690|ref|YP_002467122.1| - 0.041 13.2 0.0 2.6 7.3 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DUF4129 PF13559.6 gi|219852691|ref|YP_002467123.1| - 0.0097 16.1 3.1 0.064 13.5 0.0 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) Rep_fac_C PF08542.11 gi|219852692|ref|YP_002467124.1| - 1.6e-16 60.5 0.0 4.8e-16 58.9 0.0 1.8 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|219852692|ref|YP_002467124.1| - 2.3e-15 57.2 0.0 2e-14 54.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|219852692|ref|YP_002467124.1| - 7.7e-15 55.0 0.0 1.2e-10 41.4 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|219852692|ref|YP_002467124.1| - 3.6e-08 33.3 0.3 1.4e-06 28.1 0.0 2.9 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|219852692|ref|YP_002467124.1| - 1.1e-05 26.0 0.3 0.0017 18.7 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|219852692|ref|YP_002467124.1| - 1.6e-05 25.2 0.0 3.3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|219852692|ref|YP_002467124.1| - 7.2e-05 22.8 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|219852692|ref|YP_002467124.1| - 0.001 18.9 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.13 gi|219852692|ref|YP_002467124.1| - 0.0011 18.8 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 gi|219852692|ref|YP_002467124.1| - 0.0013 18.1 0.0 0.45 9.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|219852692|ref|YP_002467124.1| - 0.0018 18.0 0.0 0.004 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|219852692|ref|YP_002467124.1| - 0.0028 17.9 0.5 2 8.7 0.1 2.6 2 1 1 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|219852692|ref|YP_002467124.1| - 0.004 16.9 0.0 0.0084 15.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 gi|219852692|ref|YP_002467124.1| - 0.0055 16.8 0.0 0.014 15.5 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Rad17 PF03215.15 gi|219852692|ref|YP_002467124.1| - 0.0062 16.5 0.0 0.0099 15.8 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain DUF815 PF05673.13 gi|219852692|ref|YP_002467124.1| - 0.01 15.0 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|219852692|ref|YP_002467124.1| - 0.012 15.6 0.0 0.054 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|219852692|ref|YP_002467124.1| - 0.013 15.2 0.0 2.2 8.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain TIP49 PF06068.13 gi|219852692|ref|YP_002467124.1| - 0.023 13.9 0.0 0.11 11.7 0.0 1.9 1 1 0 2 2 2 0 TIP49 P-loop domain AAA_18 PF13238.6 gi|219852692|ref|YP_002467124.1| - 0.028 15.0 0.0 0.073 13.6 0.0 1.7 1 1 1 2 2 2 0 AAA domain YdfA_immunity PF12127.8 gi|219852692|ref|YP_002467124.1| - 0.046 12.8 0.0 0.084 11.9 0.0 1.4 1 0 0 1 1 1 0 SigmaW regulon antibacterial AAA_28 PF13521.6 gi|219852692|ref|YP_002467124.1| - 0.064 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|219852692|ref|YP_002467124.1| - 0.083 13.0 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Viral_helicase1 PF01443.18 gi|219852692|ref|YP_002467124.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|219852692|ref|YP_002467124.1| - 0.13 12.2 0.0 0.43 10.6 0.0 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit MCM PF00493.23 gi|219852693|ref|YP_002467125.1| - 5.2e-91 303.7 0.0 4.2e-60 202.6 0.0 2.9 3 0 0 3 3 3 2 MCM P-loop domain MCM_OB PF17207.3 gi|219852693|ref|YP_002467125.1| - 2.2e-31 108.3 0.8 4e-31 107.5 0.8 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|219852693|ref|YP_002467125.1| - 9.9e-28 96.4 2.0 2.2e-26 92.1 0.8 2.9 2 0 0 2 2 2 1 MCM AAA-lid domain LAGLIDADG_3 PF14528.6 gi|219852693|ref|YP_002467125.1| - 4.9e-08 33.2 0.0 0.00031 21.0 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain MCM_N PF14551.6 gi|219852693|ref|YP_002467125.1| - 0.00018 22.1 0.2 0.0011 19.5 0.1 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|219852693|ref|YP_002467125.1| - 0.0014 18.1 0.2 12 5.2 0.0 3.9 3 1 1 4 4 4 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|219852693|ref|YP_002467125.1| - 0.01 15.9 0.0 0.028 14.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|219852693|ref|YP_002467125.1| - 0.039 13.8 0.0 0.62 9.9 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mem_trans PF03547.18 gi|219852694|ref|YP_002467126.1| - 1.9e-32 112.1 29.1 1.2e-17 63.5 13.4 2.0 1 1 1 2 2 2 2 Membrane transport protein SBF PF01758.16 gi|219852694|ref|YP_002467126.1| - 9.4e-06 25.4 7.8 2.3e-05 24.1 7.8 1.8 1 0 0 1 1 1 1 Sodium Bile acid symporter family Strumpellin PF10266.9 gi|219852694|ref|YP_002467126.1| - 0.23 9.1 0.1 0.32 8.7 0.1 1.1 1 0 0 1 1 1 0 Hereditary spastic paraplegia protein strumpellin Rotamase_3 PF13616.6 gi|219852695|ref|YP_002467127.1| - 5.5e-27 94.6 0.1 6.8e-27 94.3 0.1 1.2 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 gi|219852695|ref|YP_002467127.1| - 4.2e-26 91.7 0.0 5.3e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 gi|219852695|ref|YP_002467127.1| - 3.6e-09 37.5 0.0 4.1e-09 37.3 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain MCPsignal PF00015.21 gi|219852696|ref|YP_002467128.1| - 6.1e-42 143.4 48.0 5.4e-40 137.0 18.1 4.3 1 1 3 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|219852696|ref|YP_002467128.1| - 1.2e-13 51.0 0.0 1.2e-06 28.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|219852696|ref|YP_002467128.1| - 1.7e-12 47.1 0.0 7.2e-06 25.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|219852696|ref|YP_002467128.1| - 1.4e-11 44.6 0.1 2.8e-05 24.3 0.0 3.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852696|ref|YP_002467128.1| - 1.4e-11 44.5 0.0 5.4e-06 26.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain DUF948 PF06103.11 gi|219852696|ref|YP_002467128.1| - 0.00018 21.7 23.9 0.16 12.3 1.2 4.7 2 2 2 4 4 4 4 Bacterial protein of unknown function (DUF948) Cortex-I_coil PF09304.10 gi|219852696|ref|YP_002467128.1| - 0.0018 18.5 6.3 0.2 11.9 0.0 3.3 3 0 0 3 3 3 2 Cortexillin I, coiled coil HAMP PF00672.25 gi|219852696|ref|YP_002467128.1| - 0.065 13.6 2.6 1.8 9.0 0.1 3.9 4 0 0 4 4 4 0 HAMP domain PAS_7 PF12860.7 gi|219852696|ref|YP_002467128.1| - 0.066 13.4 3.3 17 5.6 0.0 4.3 5 0 0 5 5 5 0 PAS fold DUF1664 PF07889.12 gi|219852696|ref|YP_002467128.1| - 0.19 11.8 18.6 4.5 7.3 0.6 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|219852696|ref|YP_002467128.1| - 1 9.4 24.3 0.44 10.6 1.5 4.3 2 2 3 5 5 5 0 Laminin Domain II Fib_alpha PF08702.10 gi|219852696|ref|YP_002467128.1| - 1.8 8.7 9.7 18 5.5 3.3 3.2 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family IFT57 PF10498.9 gi|219852696|ref|YP_002467128.1| - 2.6 6.9 7.5 5.7 5.8 3.6 2.2 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Syntaxin-6_N PF09177.11 gi|219852696|ref|YP_002467128.1| - 3.5 8.2 10.1 5.9 7.5 3.1 3.9 3 2 1 4 4 3 0 Syntaxin 6, N-terminal DASH_Dad2 PF08654.10 gi|219852696|ref|YP_002467128.1| - 6.7 7.2 17.2 19 5.7 5.7 3.9 2 2 0 2 2 2 0 DASH complex subunit Dad2 TMPIT PF07851.13 gi|219852696|ref|YP_002467128.1| - 6.7 5.9 7.6 8.9 5.5 2.9 2.3 2 0 0 2 2 2 0 TMPIT-like protein Acetyltransf_1 PF00583.25 gi|219852697|ref|YP_002467129.1| - 3.9e-11 43.2 0.0 4.8e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|219852697|ref|YP_002467129.1| - 1.4e-10 41.2 0.0 1.8e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|219852697|ref|YP_002467129.1| - 1.7e-09 37.9 0.0 2.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|219852697|ref|YP_002467129.1| - 0.00032 20.6 0.0 0.00062 19.7 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|219852697|ref|YP_002467129.1| - 0.0013 18.8 0.0 0.0022 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF2156 PF09924.9 gi|219852698|ref|YP_002467130.1| - 2.2e-50 171.4 0.0 2.5e-50 171.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) Prefoldin_2 PF01920.20 gi|219852699|ref|YP_002467131.1| - 9.2e-24 83.4 18.7 1e-23 83.3 18.7 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF3958 PF13125.6 gi|219852699|ref|YP_002467131.1| - 0.0029 17.8 11.9 0.0038 17.4 11.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3958) Prefoldin PF02996.17 gi|219852699|ref|YP_002467131.1| - 0.0039 17.1 3.9 0.0039 17.1 3.9 2.4 1 1 2 3 3 3 1 Prefoldin subunit DHR10 PF18595.1 gi|219852699|ref|YP_002467131.1| - 0.0065 16.5 15.3 0.29 11.2 2.2 2.1 2 0 0 2 2 2 2 Designed helical repeat protein 10 domain T6SS-SciN PF12790.7 gi|219852699|ref|YP_002467131.1| - 0.015 15.0 0.1 0.031 14.0 0.1 1.5 1 0 0 1 1 1 0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 Tropomyosin_1 PF12718.7 gi|219852699|ref|YP_002467131.1| - 0.039 14.1 3.6 0.039 14.1 3.6 2.2 2 0 0 2 2 2 0 Tropomyosin like APG6_N PF17675.1 gi|219852699|ref|YP_002467131.1| - 0.041 14.4 11.1 0.059 13.9 11.1 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region ASD2 PF08687.11 gi|219852699|ref|YP_002467131.1| - 0.053 13.1 10.3 0.076 12.6 10.3 1.2 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 BMFP PF04380.13 gi|219852699|ref|YP_002467131.1| - 0.07 13.6 10.0 2.3 8.8 1.4 3.1 3 0 0 3 3 3 0 Membrane fusogenic activity PspB PF06667.12 gi|219852699|ref|YP_002467131.1| - 0.13 12.4 0.7 0.13 12.4 0.7 2.1 2 1 0 2 2 2 0 Phage shock protein B CinA_KH PF18146.1 gi|219852699|ref|YP_002467131.1| - 0.13 12.4 2.9 0.18 12.0 0.5 2.0 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain DUF4988 PF16378.5 gi|219852699|ref|YP_002467131.1| - 0.17 11.5 3.5 0.73 9.5 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function Nup54 PF13874.6 gi|219852699|ref|YP_002467131.1| - 0.24 11.5 10.2 0.15 12.1 1.1 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 GrpE PF01025.19 gi|219852699|ref|YP_002467131.1| - 0.37 10.5 10.5 0.074 12.7 2.7 2.0 2 0 0 2 2 2 0 GrpE CLZ PF16526.5 gi|219852699|ref|YP_002467131.1| - 0.41 11.0 11.1 0.064 13.6 4.2 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FlxA PF14282.6 gi|219852699|ref|YP_002467131.1| - 0.53 10.3 21.7 0.28 11.2 4.0 2.3 2 0 0 2 2 2 0 FlxA-like protein TPR_MLP1_2 PF07926.12 gi|219852699|ref|YP_002467131.1| - 0.62 10.1 17.4 1.1 9.4 17.4 1.4 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein FUSC PF04632.12 gi|219852699|ref|YP_002467131.1| - 0.69 8.4 1.9 0.75 8.3 1.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family GAS PF13851.6 gi|219852699|ref|YP_002467131.1| - 0.81 9.0 18.4 3.6 6.9 18.6 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding ADIP PF11559.8 gi|219852699|ref|YP_002467131.1| - 0.83 9.7 16.5 0.52 10.4 4.7 2.1 1 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding V_ATPase_I PF01496.19 gi|219852699|ref|YP_002467131.1| - 0.84 7.5 8.2 0.96 7.3 8.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family YabA PF06156.13 gi|219852699|ref|YP_002467131.1| - 1.6 9.4 14.4 4.7 7.9 2.0 2.2 1 1 1 2 2 2 0 Initiation control protein YabA ZapB PF06005.12 gi|219852699|ref|YP_002467131.1| - 1.8 9.0 18.1 3.2 8.3 5.9 2.2 2 0 0 2 2 2 0 Cell division protein ZapB NPV_P10 PF05531.12 gi|219852699|ref|YP_002467131.1| - 3.2 8.3 9.1 7 7.2 1.3 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Exonuc_VII_L PF02601.15 gi|219852699|ref|YP_002467131.1| - 3.5 7.1 8.5 4.2 6.9 8.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit YscO PF07321.12 gi|219852699|ref|YP_002467131.1| - 6.1 6.8 20.0 1.7 8.6 6.4 2.0 1 1 0 2 2 2 0 Type III secretion protein YscO Laminin_II PF06009.12 gi|219852699|ref|YP_002467131.1| - 6.6 6.8 12.5 18 5.3 1.8 2.0 1 1 1 2 2 2 0 Laminin Domain II DUF812 PF05667.11 gi|219852699|ref|YP_002467131.1| - 7.4 5.3 21.1 0.24 10.2 6.7 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF812) NDUF_B5 PF09781.9 gi|219852699|ref|YP_002467131.1| - 7.7 6.1 8.3 1.5 8.4 2.2 2.0 2 0 0 2 2 2 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit FlaC_arch PF05377.11 gi|219852699|ref|YP_002467131.1| - 8.3 6.9 12.1 0.88 10.0 3.1 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) HAUS6_N PF14661.6 gi|219852699|ref|YP_002467131.1| - 8.7 5.9 13.7 23 4.4 13.4 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus SlyX PF04102.12 gi|219852699|ref|YP_002467131.1| - 8.8 7.0 14.3 2 9.1 2.4 2.5 2 0 0 2 2 2 0 SlyX DUF948 PF06103.11 gi|219852699|ref|YP_002467131.1| - 8.9 6.7 8.2 5.1 7.4 1.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) HMGL-like PF00682.19 gi|219852700|ref|YP_002467132.1| - 7.2e-86 288.0 6.5 1.2e-85 287.3 6.5 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|219852700|ref|YP_002467132.1| - 2e-26 92.5 0.4 6.9e-26 90.7 0.1 2.1 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Erythro_esteras PF05139.14 gi|219852701|ref|YP_002467133.1| - 8.2e-59 200.1 0.0 9.4e-59 199.9 0.0 1.0 1 0 0 1 1 1 1 Erythromycin esterase Cofac_haem_bdg PF04187.13 gi|219852701|ref|YP_002467133.1| - 0.13 12.2 0.1 2.5 8.0 0.1 2.1 2 0 0 2 2 2 0 Haem-binding uptake, Tiki superfamily, ChaN SDF PF00375.18 gi|219852702|ref|YP_002467134.1| - 6e-56 190.1 24.7 2e-55 188.4 24.7 1.8 1 1 0 1 1 1 1 Sodium:dicarboxylate symporter family SBP_bac_3 PF00497.20 gi|219852702|ref|YP_002467134.1| - 4.5e-32 111.3 0.4 7.2e-32 110.6 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 ECF-ribofla_trS PF07155.12 gi|219852702|ref|YP_002467134.1| - 0.001 19.1 4.6 0.001 19.1 4.6 2.2 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component Rubrerythrin PF02915.17 gi|219852703|ref|YP_002467135.1| - 5.6e-17 62.4 3.7 3e-08 34.2 0.2 2.0 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 gi|219852703|ref|YP_002467135.1| - 4.2e-08 33.5 0.4 6.2e-08 32.9 0.4 1.3 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|219852703|ref|YP_002467135.1| - 2.6e-06 27.7 0.9 0.00012 22.4 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF3231 PF11553.8 gi|219852703|ref|YP_002467135.1| - 0.00056 19.6 0.4 0.069 12.8 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3231) Ald_deCOase PF11266.8 gi|219852703|ref|YP_002467135.1| - 0.0019 18.0 0.5 0.096 12.4 0.1 2.1 2 0 0 2 2 2 1 Long-chain fatty aldehyde decarbonylase COQ7 PF03232.13 gi|219852703|ref|YP_002467135.1| - 0.008 16.0 0.5 0.86 9.3 0.0 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.24 gi|219852703|ref|YP_002467135.1| - 0.014 15.4 1.7 0.054 13.4 1.7 1.9 1 1 0 1 1 1 0 Ferritin-like domain DUF1657 PF07870.11 gi|219852703|ref|YP_002467135.1| - 0.016 15.1 3.4 0.099 12.6 0.5 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF1657) TRCF PF03461.15 gi|219852703|ref|YP_002467135.1| - 0.017 15.5 1.7 1.8 9.0 0.1 2.2 2 0 0 2 2 2 0 TRCF domain Lipase_GDSL_2 PF13472.6 gi|219852704|ref|YP_002467136.1| - 6.6e-19 69.0 0.4 1.1e-18 68.2 0.4 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|219852704|ref|YP_002467136.1| - 1.4e-08 35.0 0.0 2e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF1720 PF08226.11 gi|219852704|ref|YP_002467136.1| - 0.031 14.7 0.4 0.099 13.1 0.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1720) DUF2020 PF09449.10 gi|219852704|ref|YP_002467136.1| - 0.058 13.2 0.5 0.11 12.4 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2020) Lipase_GDSL_3 PF14606.6 gi|219852704|ref|YP_002467136.1| - 0.07 13.3 0.0 0.098 12.8 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family tRNA-synt_2 PF00152.20 gi|219852705|ref|YP_002467137.1| - 4.3e-84 282.3 1.6 5.3e-84 282.0 1.6 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|219852705|ref|YP_002467137.1| - 1.1e-15 57.4 0.3 2.4e-15 56.3 0.3 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|219852705|ref|YP_002467137.1| - 2.5e-07 30.4 0.7 0.0001 21.9 0.1 2.5 2 1 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA_anti_2 PF13742.6 gi|219852705|ref|YP_002467137.1| - 0.077 13.2 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Rhodanese PF00581.20 gi|219852706|ref|YP_002467138.1| - 1.7e-18 67.1 0.0 2.2e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain TcpA PF05946.12 gi|219852706|ref|YP_002467138.1| - 0.13 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Toxin-coregulated pilus subunit TcpA WD40 PF00400.32 gi|219852707|ref|YP_002467139.1| - 1.2e-09 38.6 4.8 0.0069 17.2 0.0 6.9 5 2 2 7 7 7 2 WD domain, G-beta repeat PQQ_2 PF13360.6 gi|219852707|ref|YP_002467139.1| - 3.4e-08 33.4 1.0 0.0017 17.9 0.1 2.7 1 1 2 3 3 3 2 PQQ-like domain ANAPC4_WD40 PF12894.7 gi|219852707|ref|YP_002467139.1| - 9.1e-07 29.1 0.0 0.00048 20.4 0.0 3.6 2 1 0 3 3 3 1 Anaphase-promoting complex subunit 4 WD40 domain PQQ_3 PF13570.6 gi|219852707|ref|YP_002467139.1| - 0.016 15.7 0.2 0.016 15.7 0.2 6.7 8 0 0 8 8 8 0 PQQ-like domain Chi-conotoxin PF16981.5 gi|219852707|ref|YP_002467139.1| - 0.15 12.3 0.3 0.29 11.4 0.3 1.4 1 0 0 1 1 1 0 chi-Conotoxin or t superfamily DUF475 PF04332.15 gi|219852709|ref|YP_002467141.1| - 1.2e-44 153.3 10.0 1.4e-44 153.0 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|219852709|ref|YP_002467141.1| - 1.8e-19 70.2 9.7 1.1e-16 61.0 9.7 2.2 1 1 0 1 1 1 1 Integral membrane protein TerC family RraA-like PF03737.15 gi|219852710|ref|YP_002467142.1| - 8.1e-42 142.9 1.3 8.1e-42 142.9 1.3 1.8 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|219852710|ref|YP_002467142.1| - 6e-19 68.5 7.1 3.1e-18 66.2 5.9 2.4 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.19 gi|219852710|ref|YP_002467142.1| - 0.00081 19.0 0.0 0.0022 17.6 0.0 1.5 1 1 0 1 1 1 1 HMGL-like FMN_dh PF01070.18 gi|219852710|ref|YP_002467142.1| - 0.0067 15.5 0.5 0.0067 15.5 0.5 1.4 2 0 0 2 2 2 1 FMN-dependent dehydrogenase HTH_15 PF12324.8 gi|219852710|ref|YP_002467142.1| - 0.019 14.9 0.1 0.15 12.0 0.0 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase Trp_syntA PF00290.20 gi|219852710|ref|YP_002467142.1| - 0.074 11.9 1.7 0.22 10.4 0.5 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.19 gi|219852710|ref|YP_002467142.1| - 0.083 12.3 1.6 0.15 11.4 1.6 1.5 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.21 gi|219852710|ref|YP_002467142.1| - 0.16 11.4 6.8 0.024 14.1 1.5 2.4 3 1 0 3 3 3 0 Histidine biosynthesis protein ACT PF01842.25 gi|219852711|ref|YP_002467143.1| - 3.8e-16 58.6 1.1 2.6e-07 30.3 0.0 3.2 1 1 2 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|219852711|ref|YP_002467143.1| - 6.6e-09 36.2 0.0 0.0013 19.3 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|219852711|ref|YP_002467143.1| - 7.9e-09 35.2 0.1 0.00017 21.3 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|219852711|ref|YP_002467143.1| - 0.00089 19.2 0.0 0.014 15.4 0.0 2.0 2 0 0 2 2 2 1 ACT domain AMP-binding_C_2 PF14535.6 gi|219852712|ref|YP_002467144.1| - 7e-32 109.6 0.0 1.9e-31 108.2 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|219852712|ref|YP_002467144.1| - 7.5e-16 57.7 0.0 1.1e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|219852712|ref|YP_002467144.1| - 0.041 12.7 0.0 0.23 10.2 0.0 1.9 2 0 0 2 2 2 0 GH3 auxin-responsive promoter AMP-binding_C_2 PF14535.6 gi|219852713|ref|YP_002467145.1| - 9.8e-30 102.7 0.1 2.6e-29 101.4 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|219852713|ref|YP_002467145.1| - 1.9e-17 63.0 0.3 8.6e-15 54.2 0.0 2.1 2 0 0 2 2 2 2 AMP-binding enzyme GH3 PF03321.13 gi|219852713|ref|YP_002467145.1| - 0.14 11.0 0.0 0.36 9.6 0.0 1.6 2 0 0 2 2 2 0 GH3 auxin-responsive promoter Glycos_trans_3N PF02885.17 gi|219852714|ref|YP_002467146.1| - 1e-14 54.1 0.0 1.9e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|219852714|ref|YP_002467146.1| - 1.2e-14 54.6 0.6 1.8e-13 50.7 0.6 2.3 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|219852714|ref|YP_002467146.1| - 1.1e-11 44.2 0.0 2.2e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.21 gi|219852714|ref|YP_002467146.1| - 0.0054 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|219852714|ref|YP_002467146.1| - 0.0055 15.6 0.0 0.0095 14.8 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) HlyD_3 PF13437.6 gi|219852714|ref|YP_002467146.1| - 0.067 13.9 0.0 0.2 12.4 0.0 1.8 1 0 0 1 1 1 0 HlyD family secretion protein SVA PF05326.11 gi|219852715|ref|YP_002467147.1| - 0.069 13.2 0.1 0.092 12.7 0.1 1.2 1 0 0 1 1 1 0 Seminal vesicle autoantigen (SVA) Epimerase PF01370.21 gi|219852716|ref|YP_002467148.1| - 2.2e-56 191.0 0.0 2.9e-56 190.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219852716|ref|YP_002467148.1| - 1.1e-26 94.1 0.0 5.3e-20 72.1 0.0 2.8 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|219852716|ref|YP_002467148.1| - 1.4e-08 34.0 0.0 0.0006 18.9 0.0 2.3 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|219852716|ref|YP_002467148.1| - 0.00042 20.3 0.1 0.0024 17.8 0.0 2.1 2 1 0 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|219852716|ref|YP_002467148.1| - 0.00045 19.5 0.0 1.1 8.3 0.0 2.8 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|219852716|ref|YP_002467148.1| - 0.0012 18.0 0.0 0.0023 17.1 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|219852716|ref|YP_002467148.1| - 0.035 13.3 0.1 0.53 9.4 0.0 2.1 2 0 0 2 2 2 0 Male sterility protein NmrA PF05368.13 gi|219852716|ref|YP_002467148.1| - 0.046 13.3 0.3 8 5.9 0.1 2.9 3 0 0 3 3 3 0 NmrA-like family KR PF08659.10 gi|219852716|ref|YP_002467148.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 KR domain Glyco_trans_1_3 PF13528.6 gi|219852717|ref|YP_002467149.1| - 8.5e-07 28.5 0.0 4.2e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|219852717|ref|YP_002467149.1| - 0.0078 16.2 0.0 0.019 14.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain GDP_Man_Dehyd PF16363.5 gi|219852718|ref|YP_002467150.1| - 1.8e-137 458.2 0.0 2.2e-137 458.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|219852718|ref|YP_002467150.1| - 3e-69 233.2 0.0 3.8e-69 232.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|219852718|ref|YP_002467150.1| - 4e-08 32.7 0.0 5.4e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|219852718|ref|YP_002467150.1| - 9e-06 25.0 0.0 4.8e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|219852718|ref|YP_002467150.1| - 0.13 11.7 0.0 0.31 10.5 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Hexapep PF00132.24 gi|219852719|ref|YP_002467151.1| - 2.1e-12 46.2 6.2 1.1e-10 40.7 2.0 2.3 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|219852719|ref|YP_002467151.1| - 4.3e-10 39.2 1.4 4.3e-10 39.2 1.4 1.9 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase UDPG_MGDP_dh_N PF03721.14 gi|219852720|ref|YP_002467152.1| - 3.7e-33 114.7 2.1 1.9e-25 89.5 0.2 2.5 1 1 1 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|219852720|ref|YP_002467152.1| - 1.2e-25 89.6 0.0 2.4e-25 88.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|219852720|ref|YP_002467152.1| - 8.1e-21 74.4 0.0 8e-20 71.2 0.0 2.4 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.23 gi|219852720|ref|YP_002467152.1| - 1.7e-05 24.8 0.8 0.21 11.5 0.0 3.7 3 1 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|219852720|ref|YP_002467152.1| - 3.5e-05 23.2 0.0 0.021 14.2 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|219852720|ref|YP_002467152.1| - 5.1e-05 23.5 0.0 0.00068 19.8 0.0 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.17 gi|219852720|ref|YP_002467152.1| - 0.0041 16.1 0.1 0.41 9.6 0.1 2.5 2 0 0 2 2 2 1 Prephenate dehydrogenase TrkA_N PF02254.18 gi|219852720|ref|YP_002467152.1| - 0.0059 16.9 0.5 4.2 7.7 0.1 3.7 3 1 0 3 3 3 1 TrkA-N domain NAD_binding_11 PF14833.6 gi|219852720|ref|YP_002467152.1| - 0.012 15.8 0.2 0.025 14.8 0.2 1.5 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|219852720|ref|YP_002467152.1| - 0.027 15.1 1.0 0.84 10.3 0.1 3.3 4 0 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|219852720|ref|YP_002467152.1| - 0.1 13.2 0.3 31 5.2 0.0 2.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|219852721|ref|YP_002467153.1| - 3.9e-64 216.4 0.0 4.6e-64 216.2 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219852721|ref|YP_002467153.1| - 4e-56 190.8 0.0 2.2e-55 188.4 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|219852721|ref|YP_002467153.1| - 5.3e-24 84.7 0.0 7.2e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|219852721|ref|YP_002467153.1| - 4.8e-18 65.3 0.2 3.7e-17 62.4 0.2 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|219852721|ref|YP_002467153.1| - 1e-13 51.1 0.0 1.6e-13 50.4 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|219852721|ref|YP_002467153.1| - 4.3e-10 39.8 0.0 6.1e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|219852721|ref|YP_002467153.1| - 7.4e-08 31.9 0.0 0.00021 20.6 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|219852721|ref|YP_002467153.1| - 2e-05 24.2 0.1 3e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|219852721|ref|YP_002467153.1| - 0.0028 17.9 0.1 0.0061 16.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain Ldh_1_N PF00056.23 gi|219852721|ref|YP_002467153.1| - 0.015 15.4 0.1 0.028 14.5 0.1 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain adh_short PF00106.25 gi|219852721|ref|YP_002467153.1| - 0.057 12.9 0.1 0.11 11.9 0.1 1.6 1 0 0 1 1 1 0 short chain dehydrogenase KR PF08659.10 gi|219852721|ref|YP_002467153.1| - 0.2 11.5 0.2 1.2 9.0 0.2 2.3 1 1 0 1 1 1 0 KR domain DUF2150 PF09920.9 gi|219852723|ref|YP_002467155.1| - 6.4e-58 195.8 0.3 7.4e-58 195.6 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) tRNA_anti-codon PF01336.25 gi|219852724|ref|YP_002467156.1| - 0.0004 20.3 0.3 0.0012 18.8 0.3 1.8 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain RMI2 PF16100.5 gi|219852724|ref|YP_002467156.1| - 0.0032 17.3 0.2 0.0087 15.9 0.1 1.7 1 1 1 2 2 2 1 RecQ-mediated genome instability protein 2 DUF4131 PF13567.6 gi|219852724|ref|YP_002467156.1| - 0.029 14.0 0.5 0.069 12.8 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) PUA PF01472.20 gi|219852724|ref|YP_002467156.1| - 0.092 12.7 0.1 0.2 11.6 0.1 1.5 2 0 0 2 2 2 0 PUA domain MSP1a PF11670.8 gi|219852724|ref|YP_002467156.1| - 0.24 10.7 0.6 0.32 10.2 0.6 1.1 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) DUF997 PF06196.12 gi|219852724|ref|YP_002467156.1| - 0.33 11.0 3.1 0.56 10.3 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF997) tRNA_anti-like PF12869.7 gi|219852724|ref|YP_002467156.1| - 0.6 9.7 2.3 1.6 8.3 0.0 2.4 1 1 1 2 2 2 0 tRNA_anti-like Form_Nir_trans PF01226.17 gi|219852725|ref|YP_002467157.1| - 6.6e-74 248.2 34.8 7.6e-74 248.0 34.8 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter CBM_6 PF03422.15 gi|219852726|ref|YP_002467158.1| - 4.7e-60 201.4 26.6 1.8e-17 63.8 2.4 6.1 5 1 0 5 5 5 4 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852726|ref|YP_002467158.1| - 2e-35 121.3 8.5 3.9e-10 39.8 0.0 5.5 5 0 0 5 5 5 4 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219852726|ref|YP_002467158.1| - 2.5e-19 69.7 24.7 3.8e-06 27.2 0.8 5.3 5 0 0 5 5 5 4 Carbohydrate binding module (family 35) Beta_helix PF13229.6 gi|219852726|ref|YP_002467158.1| - 2e-11 44.0 19.7 5.9e-07 29.5 11.8 3.1 1 1 1 2 2 2 2 Right handed beta helix region PEGA PF08308.11 gi|219852726|ref|YP_002467158.1| - 1.8e-06 27.7 2.5 1.3 8.9 0.0 5.1 4 0 0 4 4 4 3 PEGA domain CysA_C_terminal PF17850.1 gi|219852726|ref|YP_002467158.1| - 0.0059 17.2 0.8 6.4 7.4 0.0 4.0 3 0 0 3 3 3 1 CysA C-terminal regulatory domain Alpha-amylase_C PF02806.18 gi|219852726|ref|YP_002467158.1| - 0.23 11.9 1.9 2.1 8.9 0.0 3.5 3 0 0 3 3 3 0 Alpha amylase, C-terminal all-beta domain Microtub_bd PF16796.5 gi|219852726|ref|YP_002467158.1| - 0.36 10.7 3.4 19 5.2 0.0 3.2 4 0 0 4 4 4 0 Microtubule binding DUF1743 PF08489.11 gi|219852727|ref|YP_002467159.1| - 3.4e-05 23.9 0.2 0.035 14.2 0.0 3.2 2 1 1 3 3 3 2 Domain of unknown function (DUF1743) DUF1743 PF08489.11 gi|219852728|ref|YP_002467160.1| - 8e-09 35.6 0.0 1.4e-05 25.1 0.0 3.3 2 1 0 2 2 2 1 Domain of unknown function (DUF1743) DUF2249 PF10006.9 gi|219852728|ref|YP_002467160.1| - 0.083 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Radical_SAM PF04055.21 gi|219852729|ref|YP_002467161.1| - 3.8e-08 33.9 0.2 3.6e-07 30.7 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily DUF433 PF04255.14 gi|219852729|ref|YP_002467161.1| - 0.098 12.5 0.0 13 5.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF433) Pectate_lyase_3 PF12708.7 gi|219852729|ref|YP_002467161.1| - 0.24 11.2 0.0 0.41 10.5 0.0 1.3 1 0 0 1 1 1 0 Pectate lyase superfamily protein TPP_enzyme_C PF02775.21 gi|219852730|ref|YP_002467162.1| - 3.9e-10 39.7 0.0 1.4e-09 38.0 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|219852730|ref|YP_002467162.1| - 1.1e-05 25.1 0.6 0.073 12.7 0.2 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HMGL-like PF00682.19 gi|219852731|ref|YP_002467163.1| - 6.5e-78 261.9 1.3 8.2e-78 261.6 1.3 1.1 1 0 0 1 1 1 1 HMGL-like Aconitase PF00330.20 gi|219852732|ref|YP_002467164.1| - 5.4e-85 286.1 3.5 6.1e-83 279.3 3.5 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|219852733|ref|YP_002467165.1| - 1.6e-17 64.1 0.1 2.2e-17 63.6 0.1 1.3 1 1 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.20 gi|219852735|ref|YP_002467167.1| - 8.7e-91 304.6 0.0 3.5e-90 302.7 0.0 1.7 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase MG2 PF01835.19 gi|219852736|ref|YP_002467168.1| - 2.7e-05 24.5 1.6 0.29 11.6 0.1 2.9 1 1 1 3 3 3 2 MG2 domain Radical_SAM PF04055.21 gi|219852737|ref|YP_002467169.1| - 6.2e-05 23.4 0.2 0.0002 21.8 0.2 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Saccharop_dh_N PF04455.12 gi|219852738|ref|YP_002467170.1| - 4.4e-38 129.7 0.0 8.3e-38 128.8 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region NTP_transf_3 PF12804.7 gi|219852739|ref|YP_002467171.1| - 6.3e-19 68.9 0.1 6.5e-19 68.9 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|219852739|ref|YP_002467171.1| - 0.00022 21.2 0.0 0.00044 20.3 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|219852739|ref|YP_002467171.1| - 0.0005 19.7 0.0 0.00091 18.9 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase SH3_4 PF06347.13 gi|219852739|ref|YP_002467171.1| - 0.11 12.3 0.8 1.2 9.0 0.3 2.6 2 2 0 2 2 2 0 Bacterial SH3 domain Aminotran_1_2 PF00155.21 gi|219852740|ref|YP_002467172.1| - 4.3e-38 131.4 0.0 7.5e-31 107.6 0.0 2.0 1 1 1 2 2 2 2 Aminotransferase class I and II Hairy_orange PF07527.13 gi|219852740|ref|YP_002467172.1| - 0.0068 16.6 0.1 0.04 14.1 0.0 2.1 2 0 0 2 2 2 1 Hairy Orange RHH_1 PF01402.21 gi|219852741|ref|YP_002467173.1| - 3.4e-08 33.2 0.1 4.5e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|219852741|ref|YP_002467173.1| - 0.012 15.5 0.1 0.018 15.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB ParD_antitoxin PF03693.14 gi|219852741|ref|YP_002467173.1| - 0.048 14.1 0.0 0.048 14.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Tubulin PF00091.25 gi|219852742|ref|YP_002467174.1| - 4.2e-39 134.8 1.4 1e-38 133.5 1.4 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|219852742|ref|YP_002467174.1| - 4.6e-36 123.0 0.6 3e-34 117.2 0.2 2.8 2 0 0 2 2 2 1 FtsZ family, C-terminal domain AA_kinase PF00696.28 gi|219852742|ref|YP_002467174.1| - 0.025 14.2 0.3 0.054 13.1 0.3 1.6 1 0 0 1 1 1 0 Amino acid kinase family Tubulin_2 PF13809.6 gi|219852742|ref|YP_002467174.1| - 4.5 6.4 6.2 16 4.6 0.1 2.5 1 1 1 2 2 2 0 Tubulin like DUF89 PF01937.19 gi|219852743|ref|YP_002467175.1| - 4.7e-43 147.5 0.0 5.3e-43 147.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 Robl_LC7 PF03259.17 gi|219852744|ref|YP_002467176.1| - 3.1e-11 42.9 0.0 4.8e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain LAMTOR5 PF16672.5 gi|219852744|ref|YP_002467176.1| - 0.03 14.2 0.1 0.074 13.0 0.1 1.6 1 1 0 1 1 1 0 Ragulator complex protein LAMTOR5 MetOD2 PF18548.1 gi|219852745|ref|YP_002467177.1| - 1.2e-34 118.3 2.7 1.8e-34 117.7 2.7 1.3 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|219852745|ref|YP_002467177.1| - 4.9e-23 81.4 0.7 1.1e-22 80.3 0.2 1.7 2 0 0 2 2 2 1 Response regulator receiver domain SAGA-Tad1 PF12767.7 gi|219852745|ref|YP_002467177.1| - 0.025 14.3 0.1 0.065 13.0 0.1 1.8 1 1 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit Response_reg PF00072.24 gi|219852746|ref|YP_002467178.1| - 3.6e-22 78.6 0.8 4.5e-22 78.3 0.8 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF3365 PF11845.8 gi|219852746|ref|YP_002467178.1| - 0.053 13.8 0.0 0.055 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3365) RNA_pol_Rpb5_C PF01191.19 gi|219852747|ref|YP_002467179.1| - 3.3e-29 100.5 0.3 3.8e-29 100.4 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|219852748|ref|YP_002467180.1| - 2.2e-50 171.0 0.1 2.7e-50 170.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|219852748|ref|YP_002467180.1| - 1.7e-26 92.2 0.0 3.5e-26 91.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|219852748|ref|YP_002467180.1| - 2.4e-16 60.0 0.4 1.1e-15 57.8 0.4 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.28 gi|219852749|ref|YP_002467181.1| - 4.5e-130 434.2 0.0 6e-130 433.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|219852749|ref|YP_002467181.1| - 7.3e-31 106.4 0.9 1.3e-30 105.6 0.9 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|219852749|ref|YP_002467181.1| - 2e-18 66.4 0.1 3.9e-18 65.5 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|219852749|ref|YP_002467181.1| - 2e-07 31.4 4.9 9.1e-07 29.3 4.9 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.12 gi|219852749|ref|YP_002467181.1| - 0.093 12.9 2.8 0.16 12.1 2.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|219852749|ref|YP_002467181.1| - 0.8 9.3 3.4 4.2 7.0 3.5 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding RNA_pol_Rpb1_1 PF04997.12 gi|219852750|ref|YP_002467182.1| - 2.8e-100 335.7 0.0 3.8e-100 335.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|219852750|ref|YP_002467182.1| - 3.8e-65 219.2 0.0 5.9e-65 218.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|219852750|ref|YP_002467182.1| - 2.1e-31 109.0 0.0 4.5e-31 107.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|219852750|ref|YP_002467182.1| - 1.9e-29 101.7 0.0 3.6e-29 100.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|219852750|ref|YP_002467182.1| - 1.6e-28 99.9 0.1 3.2e-28 98.9 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Fer4_9 PF13187.6 gi|219852750|ref|YP_002467182.1| - 2.7 8.2 7.3 2.3 8.4 0.1 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain ADK_lid PF05191.14 gi|219852750|ref|YP_002467182.1| - 5.4 7.1 6.3 14 5.8 0.0 3.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid RNA_pol_Rpb1_5 PF04998.17 gi|219852751|ref|YP_002467183.1| - 2.2e-54 184.7 1.5 3e-54 184.2 1.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|219852752|ref|YP_002467184.1| - 3.8e-16 58.6 0.0 4.6e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|219852753|ref|YP_002467185.1| - 1.8e-20 72.5 3.4 1.1e-14 54.0 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|219852753|ref|YP_002467185.1| - 5.3e-15 55.3 1.0 2.2e-14 53.3 0.1 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|219852753|ref|YP_002467185.1| - 8.4e-09 35.2 0.3 7e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|219852753|ref|YP_002467185.1| - 0.00037 20.3 1.1 0.033 14.0 0.2 2.5 2 1 0 2 2 2 2 KH domain Cas_Cas1 PF01867.16 gi|219852754|ref|YP_002467186.1| - 3.8e-47 160.8 0.0 4.4e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Acylphosphatase PF00708.18 gi|219852755|ref|YP_002467187.1| - 5.5e-20 71.6 0.1 6.1e-20 71.4 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase TPR_8 PF13181.6 gi|219852756|ref|YP_002467188.1| - 1.2 9.5 4.4 54 4.4 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat NTP_transferase PF00483.23 gi|219852757|ref|YP_002467189.1| - 1.9e-48 165.2 0.0 2.4e-48 164.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|219852757|ref|YP_002467189.1| - 1.4e-17 62.6 10.4 4.3e-05 23.1 0.3 5.7 1 1 4 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|219852757|ref|YP_002467189.1| - 1.4e-09 38.5 0.0 1.9e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|219852757|ref|YP_002467189.1| - 0.00013 21.7 8.6 0.052 13.3 0.3 4.7 1 1 3 5 5 5 4 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|219852757|ref|YP_002467189.1| - 0.0096 14.9 0.9 0.025 13.5 0.9 1.6 1 1 0 1 1 1 1 L-fucokinase CBS PF00571.28 gi|219852758|ref|YP_002467190.1| - 5.5e-27 94.0 3.0 2e-12 47.4 0.6 2.3 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|219852758|ref|YP_002467190.1| - 3.6e-11 43.2 0.0 8.4e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain HhH-GPD PF00730.25 gi|219852759|ref|YP_002467191.1| - 3.3e-10 40.4 0.0 5.3e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|219852759|ref|YP_002467191.1| - 0.00012 21.7 0.3 0.00033 20.4 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|219852759|ref|YP_002467191.1| - 0.00024 21.6 0.3 0.008 16.8 0.0 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|219852759|ref|YP_002467191.1| - 0.055 13.7 0.0 1 9.7 0.0 2.3 2 0 0 2 2 2 0 Pathogenicity locus HHH_3 PF12836.7 gi|219852759|ref|YP_002467191.1| - 0.16 12.2 0.0 0.61 10.4 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif Abhydrolase_1 PF00561.20 gi|219852760|ref|YP_002467192.1| - 1.9e-30 106.4 0.0 2.3e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|219852760|ref|YP_002467192.1| - 1.5e-21 78.1 0.2 1.7e-21 77.8 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|219852760|ref|YP_002467192.1| - 1.9e-18 66.6 0.2 3.4e-17 62.5 0.2 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DUF915 PF06028.11 gi|219852760|ref|YP_002467192.1| - 0.00069 19.0 0.0 0.0018 17.6 0.0 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_4 PF08386.10 gi|219852760|ref|YP_002467192.1| - 0.005 16.9 0.0 0.0087 16.2 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Lipase_2 PF01674.18 gi|219852760|ref|YP_002467192.1| - 0.0098 15.4 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 1 Lipase (class 2) Abhydrolase_5 PF12695.7 gi|219852760|ref|YP_002467192.1| - 0.019 14.7 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family UPF0227 PF05728.12 gi|219852760|ref|YP_002467192.1| - 0.025 14.5 0.0 0.81 9.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) Peptidase_S15 PF02129.18 gi|219852760|ref|YP_002467192.1| - 0.077 12.6 0.0 2.5 7.6 0.0 2.2 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Thioredox_DsbH PF03190.15 gi|219852761|ref|YP_002467193.1| - 6.8e-71 237.5 0.0 1.1e-70 236.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|219852761|ref|YP_002467193.1| - 3.4e-08 33.5 0.0 7.1e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|219852761|ref|YP_002467193.1| - 9.4e-07 28.4 4.0 0.00043 19.7 0.3 2.7 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|219852761|ref|YP_002467193.1| - 0.0015 18.1 0.3 0.11 11.9 0.0 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|219852761|ref|YP_002467193.1| - 0.002 17.7 1.2 0.45 10.0 0.1 2.8 4 0 0 4 4 4 2 D-glucuronyl C5-epimerase C-terminus ABC2_membrane PF01061.24 gi|219852762|ref|YP_002467194.1| - 2.6e-22 79.3 27.1 2.6e-22 79.3 27.1 2.0 1 1 1 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219852762|ref|YP_002467194.1| - 0.006 15.7 21.2 0.006 15.7 21.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF3185 PF11381.8 gi|219852762|ref|YP_002467194.1| - 0.036 14.1 0.1 0.15 12.1 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) ABC_tran PF00005.27 gi|219852763|ref|YP_002467195.1| - 4.8e-23 82.2 0.0 1.2e-22 80.9 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852763|ref|YP_002467195.1| - 3.1e-05 23.9 1.1 0.00036 20.4 0.4 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Wzt_C PF14524.6 gi|219852763|ref|YP_002467195.1| - 4.7e-05 23.5 0.0 0.0001 22.4 0.0 1.5 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_15 PF13175.6 gi|219852763|ref|YP_002467195.1| - 0.0016 18.2 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|219852763|ref|YP_002467195.1| - 0.0051 16.5 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219852763|ref|YP_002467195.1| - 0.01 16.3 0.2 0.025 15.1 0.2 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|219852763|ref|YP_002467195.1| - 0.014 15.3 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|219852763|ref|YP_002467195.1| - 0.04 14.0 0.1 0.11 12.6 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Methyltransf_11 PF08241.12 gi|219852764|ref|YP_002467196.1| - 2.5e-14 53.7 0.0 3.8e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852764|ref|YP_002467196.1| - 1.3e-09 38.6 0.0 1.9e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|219852764|ref|YP_002467196.1| - 7.8e-08 32.1 0.0 1.1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|219852764|ref|YP_002467196.1| - 9.6e-08 32.0 0.0 1.3e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852764|ref|YP_002467196.1| - 8.4e-06 25.7 0.0 1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852764|ref|YP_002467196.1| - 0.0044 17.7 0.0 0.0062 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|219852764|ref|YP_002467196.1| - 0.0071 16.1 0.0 0.0095 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|219852764|ref|YP_002467196.1| - 0.0085 15.5 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|219852764|ref|YP_002467196.1| - 0.029 13.8 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|219852764|ref|YP_002467196.1| - 0.037 13.3 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Tox-PLDMTX PF15645.6 gi|219852764|ref|YP_002467196.1| - 0.061 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Dermonecrotoxin of the Papain-like fold MTS PF05175.14 gi|219852764|ref|YP_002467196.1| - 0.14 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain YfhO PF09586.10 gi|219852765|ref|YP_002467197.1| - 3.5e-21 75.2 64.8 2.7e-10 39.2 0.0 2.2 1 1 0 2 2 2 2 Bacterial membrane protein YfhO DDE_Tnp_1_2 PF13586.6 gi|219852767|ref|YP_002467199.1| - 3e-15 56.3 0.8 4.2e-15 55.9 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|219852767|ref|YP_002467199.1| - 7.5e-13 48.6 0.3 1e-12 48.2 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|219852767|ref|YP_002467199.1| - 0.19 11.7 0.0 0.6 10.1 0.0 1.7 1 1 0 1 1 1 0 Transposase DDE domain Methyltransf_11 PF08241.12 gi|219852768|ref|YP_002467200.1| - 6.1e-14 52.5 0.0 2.6e-13 50.4 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852768|ref|YP_002467200.1| - 7.8e-11 42.5 0.0 6.4e-08 33.2 0.0 3.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219852768|ref|YP_002467200.1| - 3.1e-10 40.0 0.1 3.2e-09 36.8 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|219852768|ref|YP_002467200.1| - 6.2e-09 35.9 0.0 1.2e-08 34.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219852768|ref|YP_002467200.1| - 8.7e-09 36.0 0.0 5.3e-08 33.5 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|219852768|ref|YP_002467200.1| - 0.00028 20.8 0.1 0.00042 20.2 0.1 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|219852768|ref|YP_002467200.1| - 0.00045 19.6 0.0 0.00074 18.9 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CheR PF01739.18 gi|219852768|ref|YP_002467200.1| - 0.009 15.5 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PMT2_N PF17987.1 gi|219852768|ref|YP_002467200.1| - 0.02 15.1 0.1 0.037 14.2 0.1 1.4 1 0 0 1 1 1 0 Phosphoethanolamine N-methyltransferase 2 N-terminal NNMT_PNMT_TEMT PF01234.17 gi|219852768|ref|YP_002467200.1| - 0.023 13.9 0.0 0.045 12.9 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family CMAS PF02353.20 gi|219852768|ref|YP_002467200.1| - 0.04 13.2 0.0 0.24 10.6 0.0 2.0 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 gi|219852768|ref|YP_002467200.1| - 0.063 11.8 0.0 0.58 8.6 0.0 2.1 2 1 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase AntA PF08346.12 gi|219852768|ref|YP_002467200.1| - 0.12 13.0 0.1 0.24 12.0 0.1 1.5 1 0 0 1 1 1 0 AntA/AntB antirepressor Glyco_trans_1_4 PF13692.6 gi|219852769|ref|YP_002467201.1| - 4.7e-05 23.8 0.0 7.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|219852769|ref|YP_002467201.1| - 8.8e-05 22.1 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|219852770|ref|YP_002467202.1| - 2.3e-26 92.4 0.0 3.2e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219852770|ref|YP_002467202.1| - 4.4e-20 72.5 0.0 7.5e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219852770|ref|YP_002467202.1| - 8.4e-12 45.4 0.1 2.4e-11 43.9 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|219852770|ref|YP_002467202.1| - 2.9e-07 30.8 0.0 9.3e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|219852770|ref|YP_002467202.1| - 0.0002 21.9 0.0 0.00027 21.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain BRCT_2 PF16589.5 gi|219852770|ref|YP_002467202.1| - 0.11 12.9 0.1 0.2 12.1 0.1 1.4 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain GDP_Man_Dehyd PF16363.5 gi|219852771|ref|YP_002467203.1| - 7e-101 337.9 0.0 8.8e-101 337.6 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|219852771|ref|YP_002467203.1| - 2e-56 191.1 0.0 2.6e-56 190.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|219852771|ref|YP_002467203.1| - 8.6e-08 31.6 0.0 1.1e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|219852771|ref|YP_002467203.1| - 0.0046 16.5 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|219852771|ref|YP_002467203.1| - 0.036 13.2 0.0 0.06 12.5 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Glycos_transf_2 PF00535.26 gi|219852772|ref|YP_002467204.1| - 1.1e-14 54.6 0.0 2e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219852772|ref|YP_002467204.1| - 3.1e-06 27.3 0.0 5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219852772|ref|YP_002467204.1| - 0.00037 20.0 0.0 0.00088 18.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219852772|ref|YP_002467204.1| - 0.0027 18.2 0.0 0.0068 16.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_1_4 PF13692.6 gi|219852773|ref|YP_002467205.1| - 6.9e-05 23.3 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|219852773|ref|YP_002467205.1| - 0.0018 17.9 0.0 0.0046 16.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|219852774|ref|YP_002467206.1| - 1.2e-15 57.7 0.5 1.9e-15 57.1 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219852774|ref|YP_002467206.1| - 1.1e-11 45.1 0.0 3.4e-11 43.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219852774|ref|YP_002467206.1| - 0.014 14.9 0.0 0.03 13.8 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|219852774|ref|YP_002467206.1| - 0.015 15.3 0.2 0.047 13.6 0.2 2.1 2 1 0 2 2 2 0 Glycosyl transferase family group 2 DegT_DnrJ_EryC1 PF01041.17 gi|219852775|ref|YP_002467207.1| - 2.4e-93 313.3 0.0 3.5e-93 312.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219852775|ref|YP_002467207.1| - 3.3e-06 25.9 0.0 5.3e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|219852775|ref|YP_002467207.1| - 0.009 15.3 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase TPP_enzyme_N PF02776.18 gi|219852776|ref|YP_002467208.1| - 2.3e-47 160.8 0.0 4.6e-46 156.6 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|219852776|ref|YP_002467208.1| - 1.8e-41 141.1 0.0 3e-41 140.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|219852776|ref|YP_002467208.1| - 1.2e-37 129.1 0.2 1.5e-36 125.5 0.0 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|219852776|ref|YP_002467208.1| - 0.0012 18.6 4.0 0.48 10.1 1.0 2.3 2 0 0 2 2 2 2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Epimerase PF01370.21 gi|219852777|ref|YP_002467209.1| - 2e-41 142.1 0.0 2.4e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219852777|ref|YP_002467209.1| - 3.8e-37 128.4 0.0 2.7e-36 125.6 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|219852777|ref|YP_002467209.1| - 4.6e-12 45.5 0.0 9.2e-12 44.5 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|219852777|ref|YP_002467209.1| - 3e-09 36.4 0.0 4e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|219852777|ref|YP_002467209.1| - 2.2e-08 33.6 0.0 2.9e-06 26.6 0.0 2.7 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|219852777|ref|YP_002467209.1| - 8.5e-08 31.7 0.0 3.6e-07 29.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|219852777|ref|YP_002467209.1| - 7.4e-05 22.4 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|219852777|ref|YP_002467209.1| - 0.00017 21.6 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|219852777|ref|YP_002467209.1| - 0.00032 20.2 0.1 0.0026 17.2 0.1 2.5 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|219852777|ref|YP_002467209.1| - 0.0028 17.6 0.0 0.0057 16.6 0.0 1.5 1 1 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|219852778|ref|YP_002467210.1| - 1.8e-35 122.9 0.0 6e-35 121.2 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|219852778|ref|YP_002467210.1| - 4.9e-29 101.5 0.0 6.3e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|219852778|ref|YP_002467210.1| - 9.6e-11 41.3 0.0 2.8e-10 39.8 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|219852778|ref|YP_002467210.1| - 1.3e-09 37.5 0.0 1.6e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|219852778|ref|YP_002467210.1| - 4.7e-08 32.5 0.0 6e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|219852778|ref|YP_002467210.1| - 0.00039 19.7 0.2 0.00094 18.4 0.0 1.7 2 0 0 2 2 2 1 Male sterility protein E1-N PF14463.6 gi|219852778|ref|YP_002467210.1| - 0.038 13.8 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 E1 N-terminal domain KR PF08659.10 gi|219852778|ref|YP_002467210.1| - 0.14 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 KR domain NTP_transferase PF00483.23 gi|219852779|ref|YP_002467211.1| - 3e-21 76.2 0.0 4.1e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|219852779|ref|YP_002467211.1| - 5.8e-08 33.3 0.0 7.8e-08 32.8 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|219852779|ref|YP_002467211.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_1 PF00534.20 gi|219852780|ref|YP_002467212.1| - 8.6e-12 44.9 0.0 4.4e-11 42.6 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|219852780|ref|YP_002467212.1| - 2.4e-11 44.2 0.0 1.3e-10 41.8 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|219852780|ref|YP_002467212.1| - 5.2e-09 36.3 0.0 1.6e-08 34.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|219852780|ref|YP_002467212.1| - 2.2e-06 28.0 0.0 2.7e-05 24.5 0.0 2.7 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|219852780|ref|YP_002467212.1| - 9.9e-06 26.1 0.0 3.1e-05 24.5 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|219852780|ref|YP_002467212.1| - 0.0063 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|219852780|ref|YP_002467212.1| - 0.0066 16.2 0.0 0.015 15.0 0.0 1.6 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_transf_11 PF01531.16 gi|219852781|ref|YP_002467213.1| - 4.9e-36 124.5 0.5 8.5e-35 120.4 0.4 2.0 2 0 0 2 2 2 2 Glycosyl transferase family 11 Glycos_transf_2 PF00535.26 gi|219852782|ref|YP_002467214.1| - 8.9e-28 97.2 0.0 1.7e-27 96.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219852782|ref|YP_002467214.1| - 1e-15 58.3 0.0 3.3e-15 56.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|219852782|ref|YP_002467214.1| - 4e-13 49.5 0.0 5.3e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219852782|ref|YP_002467214.1| - 0.036 14.6 0.1 0.13 12.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|219852782|ref|YP_002467214.1| - 0.067 13.1 0.2 0.51 10.2 0.2 2.1 1 1 0 1 1 1 0 Glycosyl transferase family group 2 TP6A_N PF04406.14 gi|219852783|ref|YP_002467215.1| - 1.3e-14 53.9 0.1 3.2e-14 52.6 0.1 1.6 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|219852784|ref|YP_002467216.1| - 2.4e-62 209.5 0.0 4.8e-62 208.5 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|219852784|ref|YP_002467216.1| - 8.7e-11 42.3 0.0 1.8e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|219852784|ref|YP_002467216.1| - 2.8e-08 33.7 0.0 5.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Top6b_C PF18000.1 gi|219852784|ref|YP_002467216.1| - 2.9e-06 27.4 0.0 6.2e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain FbpA PF05833.11 gi|219852784|ref|YP_002467216.1| - 0.0016 17.3 0.0 0.003 16.4 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.6 gi|219852784|ref|YP_002467216.1| - 0.013 15.4 0.0 0.038 13.9 0.0 1.7 2 0 0 2 2 2 0 GHKL domain tRNA-synt_His PF13393.6 gi|219852785|ref|YP_002467217.1| - 1.2e-61 208.7 0.2 1.9e-61 208.1 0.2 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|219852785|ref|YP_002467217.1| - 1.8e-12 47.6 0.0 4.3e-12 46.4 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|219852785|ref|YP_002467217.1| - 2.8e-12 46.6 0.0 6.5e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|219852785|ref|YP_002467217.1| - 0.016 14.3 0.2 5.6 5.9 0.0 3.0 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) AIRC PF00731.20 gi|219852787|ref|YP_002467219.1| - 8.1e-17 61.2 3.1 8.1e-17 61.2 3.1 1.9 2 0 0 2 2 2 1 AIR carboxylase Peptidase_C37 PF05416.12 gi|219852787|ref|YP_002467219.1| - 0.12 10.9 0.1 0.16 10.4 0.1 1.1 1 0 0 1 1 1 0 Southampton virus-type processing peptidase CTP_transf_like PF01467.26 gi|219852788|ref|YP_002467220.1| - 2.6e-13 50.4 0.0 3.5e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|219852788|ref|YP_002467220.1| - 0.016 15.1 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase SlyX PF04102.12 gi|219852789|ref|YP_002467221.1| - 3 8.5 10.3 22 5.8 1.2 4.0 3 1 0 3 3 3 0 SlyX PKD PF00801.20 gi|219852791|ref|YP_002467223.1| - 1.4e-64 213.8 43.0 1.2e-13 50.7 0.1 7.2 6 0 0 6 6 6 6 PKD domain NosD PF05048.13 gi|219852791|ref|YP_002467223.1| - 6.9e-35 120.5 2.4 1e-34 119.9 2.4 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|219852791|ref|YP_002467223.1| - 3.1e-13 49.9 5.3 3.1e-13 49.9 5.3 1.7 2 0 0 2 2 2 1 Right handed beta helix region Fe-S_assembly PF04384.13 gi|219852791|ref|YP_002467223.1| - 4.5e-06 27.2 0.0 18 6.0 0.0 4.4 4 0 0 4 4 4 1 Iron-sulphur cluster assembly DUF1565 PF07602.11 gi|219852791|ref|YP_002467223.1| - 5.8e-05 22.5 1.8 0.00037 19.9 1.8 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1565) PKD_3 PF16820.5 gi|219852791|ref|YP_002467223.1| - 0.00012 21.7 9.6 2.2 8.1 0.0 6.1 6 0 0 6 6 6 2 PKD-like domain DUF5011 PF16403.5 gi|219852791|ref|YP_002467223.1| - 0.0048 17.0 0.9 2.6 8.3 0.2 3.9 3 0 0 3 3 3 1 Domain of unknown function (DUF5011) TFIIS_C PF01096.18 gi|219852791|ref|YP_002467223.1| - 0.021 14.7 0.6 45 4.0 0.0 3.3 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) HATPase_c PF02518.26 gi|219852792|ref|YP_002467224.1| - 6e-20 71.8 0.1 2.2e-19 70.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|219852792|ref|YP_002467224.1| - 0.00012 22.2 0.0 0.00026 21.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|219852792|ref|YP_002467224.1| - 0.065 13.2 0.0 0.31 11.0 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HTH_40 PF14493.6 gi|219852792|ref|YP_002467224.1| - 0.24 11.9 1.2 1.7 9.2 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4118 PF13493.6 gi|219852792|ref|YP_002467224.1| - 0.52 10.1 9.6 0.95 9.3 9.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Histidinol_dh PF00815.20 gi|219852793|ref|YP_002467225.1| - 2.2e-161 537.5 1.0 2.4e-161 537.3 1.0 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DHHA1 PF02272.19 gi|219852794|ref|YP_002467226.1| - 0.00014 22.3 0.1 0.00049 20.5 0.1 2.0 2 1 0 2 2 2 1 DHHA1 domain DUF2334 PF10096.9 gi|219852794|ref|YP_002467226.1| - 0.03 14.0 0.0 1.8 8.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2334) AAA_2 PF07724.14 gi|219852795|ref|YP_002467227.1| - 2.1e-59 200.5 4.8 6.3e-57 192.4 0.2 3.4 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 gi|219852795|ref|YP_002467227.1| - 1.6e-36 124.4 4.6 1.6e-36 124.4 4.6 3.0 2 1 1 3 3 2 1 AAA lid domain AAA PF00004.29 gi|219852795|ref|YP_002467227.1| - 3e-25 89.1 0.2 5.4e-13 49.5 0.0 3.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 gi|219852795|ref|YP_002467227.1| - 1.3e-22 79.7 0.7 7.8e-22 77.1 0.7 2.6 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 gi|219852795|ref|YP_002467227.1| - 7.5e-22 77.8 4.1 9.9e-15 54.8 0.0 3.8 4 2 1 5 5 3 2 AAA domain (dynein-related subfamily) Clp_N PF02861.20 gi|219852795|ref|YP_002467227.1| - 2e-18 66.3 1.7 2.3e-09 37.3 0.6 2.8 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component Sigma54_activat PF00158.26 gi|219852795|ref|YP_002467227.1| - 6e-12 45.6 0.3 8.5e-08 32.1 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.6 gi|219852795|ref|YP_002467227.1| - 2.8e-11 44.1 7.6 1.6e-05 25.4 0.0 5.2 4 2 1 5 5 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|219852795|ref|YP_002467227.1| - 4.9e-09 36.6 2.7 0.015 15.6 0.0 4.7 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|219852795|ref|YP_002467227.1| - 4e-08 33.4 0.4 0.026 14.5 0.0 3.8 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.21 gi|219852795|ref|YP_002467227.1| - 6.5e-08 32.2 0.1 0.015 14.7 0.0 3.5 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|219852795|ref|YP_002467227.1| - 1.2e-07 31.6 0.0 0.0038 17.0 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|219852795|ref|YP_002467227.1| - 3.5e-07 30.8 1.2 0.0065 17.0 0.0 3.7 4 0 0 4 4 2 2 AAA domain AAA_7 PF12775.7 gi|219852795|ref|YP_002467227.1| - 7.3e-06 25.6 0.1 0.16 11.4 0.0 3.3 3 0 0 3 3 3 2 P-loop containing dynein motor region TniB PF05621.11 gi|219852795|ref|YP_002467227.1| - 1e-05 25.0 0.0 0.0027 17.1 0.0 3.6 2 1 0 2 2 2 1 Bacterial TniB protein Zeta_toxin PF06414.12 gi|219852795|ref|YP_002467227.1| - 1.4e-05 24.5 0.1 0.0052 16.1 0.0 3.4 3 0 0 3 3 2 1 Zeta toxin NACHT PF05729.12 gi|219852795|ref|YP_002467227.1| - 0.00012 22.0 0.1 0.21 11.5 0.0 3.5 3 1 0 3 3 3 1 NACHT domain RNA_helicase PF00910.22 gi|219852795|ref|YP_002467227.1| - 0.00016 22.0 0.1 1 9.8 0.0 3.3 3 0 0 3 3 3 2 RNA helicase AAA_3 PF07726.11 gi|219852795|ref|YP_002467227.1| - 0.00019 21.3 0.9 0.047 13.5 0.0 3.4 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|219852795|ref|YP_002467227.1| - 0.00021 21.1 2.5 3.6 7.3 0.7 4.4 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Roc PF08477.13 gi|219852795|ref|YP_002467227.1| - 0.00025 21.3 0.0 0.41 10.9 0.0 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ResIII PF04851.15 gi|219852795|ref|YP_002467227.1| - 0.00028 20.9 0.0 0.45 10.5 0.0 4.1 3 1 1 4 4 3 1 Type III restriction enzyme, res subunit AAA_28 PF13521.6 gi|219852795|ref|YP_002467227.1| - 0.00057 20.2 0.5 0.9 9.8 0.0 3.8 4 0 0 4 4 3 1 AAA domain DNA_pol3_delta2 PF13177.6 gi|219852795|ref|YP_002467227.1| - 0.00064 19.5 0.0 0.076 12.8 0.0 3.5 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|219852795|ref|YP_002467227.1| - 0.00075 19.3 0.0 0.4 10.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|219852795|ref|YP_002467227.1| - 0.0012 18.8 0.7 1.1 9.1 0.0 3.2 3 1 0 3 3 2 1 RsgA GTPase AAA_33 PF13671.6 gi|219852795|ref|YP_002467227.1| - 0.0013 18.9 0.1 2.3 8.4 0.0 3.6 3 0 0 3 3 3 1 AAA domain TsaE PF02367.17 gi|219852795|ref|YP_002467227.1| - 0.0034 17.4 0.0 4.3 7.3 0.0 2.8 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|219852795|ref|YP_002467227.1| - 0.0068 16.9 3.6 0.65 10.5 0.0 4.2 4 0 0 4 4 4 1 ABC transporter ATPase_2 PF01637.18 gi|219852795|ref|YP_002467227.1| - 0.0099 15.8 16.6 0.33 10.8 0.1 4.7 3 2 1 4 4 3 2 ATPase domain predominantly from Archaea DnaB_C PF03796.15 gi|219852795|ref|YP_002467227.1| - 0.013 14.8 0.0 8.4 5.6 0.0 3.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|219852795|ref|YP_002467227.1| - 0.024 14.2 0.0 0.83 9.2 0.0 3.2 2 0 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|219852795|ref|YP_002467227.1| - 0.044 13.9 0.0 0.19 11.8 0.0 2.0 2 0 0 2 2 1 0 Torsin RGS PF00615.19 gi|219852795|ref|YP_002467227.1| - 0.058 13.7 0.0 0.22 11.8 0.0 2.0 1 0 0 1 1 1 0 Regulator of G protein signaling domain PduV-EutP PF10662.9 gi|219852795|ref|YP_002467227.1| - 0.062 13.1 0.0 2.7 7.7 0.0 2.8 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|219852795|ref|YP_002467227.1| - 0.1 12.9 6.8 2.6 8.4 0.1 4.6 4 2 1 5 5 4 0 AAA domain AAA_29 PF13555.6 gi|219852795|ref|YP_002467227.1| - 0.14 11.9 0.0 11 5.9 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain PilJ PF13675.6 gi|219852795|ref|YP_002467227.1| - 0.26 11.3 4.2 4.9 7.2 0.1 2.8 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF87 PF01935.17 gi|219852795|ref|YP_002467227.1| - 0.38 10.8 7.1 0.88 9.6 0.0 3.7 3 1 1 4 4 3 0 Helicase HerA, central domain Radical_SAM PF04055.21 gi|219852795|ref|YP_002467227.1| - 3.5 8.0 7.8 7 7.0 1.5 3.6 3 2 0 3 3 3 0 Radical SAM superfamily ABC_tran_CTD PF16326.5 gi|219852795|ref|YP_002467227.1| - 7.7 6.8 22.0 4.1 7.7 11.6 3.6 2 1 1 3 3 3 0 ABC transporter C-terminal domain CBM_6 PF03422.15 gi|219852796|ref|YP_002467228.1| - 5.1e-13 49.4 4.8 3.1e-12 46.9 1.3 3.2 2 1 0 2 2 2 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219852796|ref|YP_002467228.1| - 1.3e-08 35.0 5.6 7.3e-08 32.5 0.1 3.3 3 0 0 3 3 3 1 DUF5010 C-terminal domain Dockerin_1 PF00404.18 gi|219852796|ref|YP_002467228.1| - 8.3e-08 32.3 0.3 2.9e-07 30.6 0.3 2.0 1 0 0 1 1 1 1 Dockerin type I domain PKD PF00801.20 gi|219852796|ref|YP_002467228.1| - 2.4e-06 27.3 0.8 1.2e-05 25.1 0.8 2.3 1 0 0 1 1 1 1 PKD domain CBM_35 PF16990.5 gi|219852796|ref|YP_002467228.1| - 2.7e-05 24.4 3.1 5.8e-05 23.3 0.3 2.6 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) PKD_3 PF16820.5 gi|219852796|ref|YP_002467228.1| - 0.0033 17.2 0.0 0.039 13.7 0.0 2.8 2 0 0 2 2 2 1 PKD-like domain RCC1_2 PF13540.6 gi|219852796|ref|YP_002467228.1| - 0.056 13.3 6.8 31 4.5 0.0 5.7 6 0 0 6 6 6 0 Regulator of chromosome condensation (RCC1) repeat KRAB PF01352.27 gi|219852796|ref|YP_002467228.1| - 0.17 11.6 0.2 0.4 10.4 0.2 1.5 1 0 0 1 1 1 0 KRAB box EF-hand_1 PF00036.32 gi|219852796|ref|YP_002467228.1| - 0.3 10.7 5.4 4 7.2 0.1 3.6 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.6 gi|219852796|ref|YP_002467228.1| - 0.61 10.2 3.1 3.6 7.8 0.1 3.4 2 1 1 3 3 3 0 EF-hand domain SBBP PF06739.11 gi|219852796|ref|YP_002467228.1| - 8.3 6.5 12.9 69 3.6 0.0 7.5 9 2 2 11 11 11 0 Beta-propeller repeat Peptidase_S41 PF03572.18 gi|219852797|ref|YP_002467229.1| - 8.4e-15 54.7 0.0 1.3e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.6 gi|219852797|ref|YP_002467229.1| - 1.4e-06 28.5 0.1 1e-05 25.7 0.1 2.4 2 1 0 2 2 2 1 PDZ domain PDZ_6 PF17820.1 gi|219852797|ref|YP_002467229.1| - 1.9e-05 24.4 0.0 4e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Tricorn_C1 PF14684.6 gi|219852797|ref|YP_002467229.1| - 0.00028 20.9 0.1 0.00055 19.9 0.1 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain PDZ PF00595.24 gi|219852797|ref|YP_002467229.1| - 0.036 14.4 0.0 0.072 13.4 0.0 1.4 1 0 0 1 1 1 0 PDZ domain Defensin_propep PF00879.18 gi|219852797|ref|YP_002467229.1| - 0.17 12.2 0.2 0.4 11.0 0.1 1.7 2 0 0 2 2 2 0 Defensin propeptide Response_reg PF00072.24 gi|219852798|ref|YP_002467230.1| - 4.4e-24 84.8 0.4 4.9e-24 84.6 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219852799|ref|YP_002467231.1| - 3.7e-35 120.3 2.5 4.8e-12 46.0 0.0 5.4 6 0 0 6 6 6 4 PAS domain CHASE4 PF05228.13 gi|219852799|ref|YP_002467231.1| - 1.5e-34 119.1 0.0 6.1e-34 117.2 0.0 2.1 2 0 0 2 2 2 1 CHASE4 domain PAS_4 PF08448.10 gi|219852799|ref|YP_002467231.1| - 9.3e-33 112.8 0.0 9.7e-15 54.8 0.0 5.0 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|219852799|ref|YP_002467231.1| - 7e-31 106.6 0.1 1.9e-10 40.7 0.0 5.0 5 0 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|219852799|ref|YP_002467231.1| - 1.4e-22 79.7 0.0 1.8e-08 34.5 0.0 4.5 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|219852799|ref|YP_002467231.1| - 3.7e-19 68.3 0.5 0.00059 19.8 0.0 5.1 5 0 0 5 5 5 4 PAS domain HATPase_c PF02518.26 gi|219852799|ref|YP_002467231.1| - 5.1e-09 36.6 0.0 1.3e-08 35.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|219852799|ref|YP_002467231.1| - 3e-05 24.3 0.0 6.1e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 HAMP domain PAS_7 PF12860.7 gi|219852799|ref|YP_002467231.1| - 0.00054 20.1 0.5 0.36 11.0 0.1 4.6 4 1 0 4 4 4 1 PAS fold MFS_1_like PF12832.7 gi|219852799|ref|YP_002467231.1| - 0.022 13.6 0.2 0.32 9.8 0.1 2.1 2 0 0 2 2 2 0 MFS_1 like family PAS_10 PF13596.6 gi|219852799|ref|YP_002467231.1| - 0.031 14.9 0.0 1.1 9.8 0.0 3.2 3 0 0 3 3 3 0 PAS domain PAS_11 PF14598.6 gi|219852799|ref|YP_002467231.1| - 0.033 14.3 0.0 5.5 7.1 0.0 2.8 2 0 0 2 2 2 0 PAS domain DUF4446 PF14584.6 gi|219852799|ref|YP_002467231.1| - 0.62 10.0 3.2 22 5.0 0.3 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF4446) DUF4083 PF13314.6 gi|219852799|ref|YP_002467231.1| - 1.4 8.9 11.6 6.6 6.8 2.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Sigma_reg_N PF13800.6 gi|219852799|ref|YP_002467231.1| - 8 6.8 9.9 13 6.1 1.1 2.6 2 0 0 2 2 2 0 Sigma factor regulator N-terminal PAS_3 PF08447.12 gi|219852800|ref|YP_002467232.1| - 2.9e-39 133.2 3.3 7.2e-16 58.2 0.0 5.0 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.7 gi|219852800|ref|YP_002467232.1| - 5.5e-31 106.9 0.7 1.8e-07 31.3 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219852800|ref|YP_002467232.1| - 1.6e-30 105.4 1.2 7.5e-10 38.8 0.1 4.4 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|219852800|ref|YP_002467232.1| - 1.5e-27 96.0 1.7 8.6e-14 51.7 0.1 4.5 4 1 0 4 4 4 3 PAS fold Response_reg PF00072.24 gi|219852800|ref|YP_002467232.1| - 2.1e-21 76.2 0.0 8.1e-21 74.3 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|219852800|ref|YP_002467232.1| - 7.3e-16 57.8 0.6 0.00061 19.7 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.7 gi|219852800|ref|YP_002467232.1| - 1.1e-05 25.6 4.0 0.025 14.8 0.1 5.7 4 3 0 4 4 4 1 PAS fold PAS_11 PF14598.6 gi|219852800|ref|YP_002467232.1| - 5.6e-05 23.2 0.0 0.27 11.3 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|219852801|ref|YP_002467233.1| - 1.6e-25 89.8 0.0 2.9e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|219852801|ref|YP_002467233.1| - 1.3e-12 47.9 0.9 1.1e-09 38.5 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|219852801|ref|YP_002467233.1| - 4.7e-10 39.6 2.1 1.2e-09 38.3 0.4 2.6 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|219852801|ref|YP_002467233.1| - 5.5e-10 39.1 0.1 1.8e-09 37.5 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|219852801|ref|YP_002467233.1| - 0.00023 21.0 0.0 0.00061 19.7 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 gi|219852801|ref|YP_002467233.1| - 0.00032 20.9 0.0 0.0055 16.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|219852801|ref|YP_002467233.1| - 0.0074 16.3 0.7 0.074 13.1 0.0 2.7 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|219852801|ref|YP_002467233.1| - 0.041 13.9 0.0 0.12 12.4 0.0 1.9 1 0 0 1 1 1 0 PAS domain PAS_9 PF13426.7 gi|219852802|ref|YP_002467234.1| - 9.5e-05 22.6 0.0 0.00076 19.7 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|219852802|ref|YP_002467234.1| - 0.0011 19.1 0.3 0.0038 17.5 0.0 1.9 2 0 0 2 2 2 1 PAS fold COMPASS-Shg1 PF05205.12 gi|219852802|ref|YP_002467234.1| - 0.0031 18.2 0.6 0.0059 17.3 0.6 1.4 1 0 0 1 1 1 1 COMPASS (Complex proteins associated with Set1p) component shg1 PAS PF00989.25 gi|219852802|ref|YP_002467234.1| - 0.035 14.1 0.3 0.38 10.8 0.0 2.4 2 0 0 2 2 2 0 PAS fold YabA PF06156.13 gi|219852802|ref|YP_002467234.1| - 0.061 14.0 1.0 0.09 13.4 1.0 1.2 1 0 0 1 1 1 0 Initiation control protein YabA Selenoprotein_S PF06936.11 gi|219852802|ref|YP_002467234.1| - 0.18 11.6 2.1 0.25 11.1 2.1 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) PEMT PF04191.13 gi|219852803|ref|YP_002467235.1| - 4e-12 46.5 1.2 4e-12 46.5 1.2 1.9 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|219852803|ref|YP_002467235.1| - 1.2e-07 32.1 0.0 2.7e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.12 gi|219852803|ref|YP_002467235.1| - 0.00027 20.5 0.5 0.00038 20.1 0.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) NnrU PF07298.11 gi|219852803|ref|YP_002467235.1| - 0.00044 19.8 1.0 0.00059 19.4 0.3 1.5 1 1 0 1 1 1 1 NnrU protein ERG4_ERG24 PF01222.17 gi|219852803|ref|YP_002467235.1| - 0.0011 17.8 0.0 0.0011 17.8 0.0 1.5 2 0 0 2 2 2 1 Ergosterol biosynthesis ERG4/ERG24 family YwiC PF14256.6 gi|219852803|ref|YP_002467235.1| - 0.0013 19.0 5.2 0.0054 17.0 0.8 2.2 1 1 1 2 2 2 1 YwiC-like protein MtrG PF04210.13 gi|219852803|ref|YP_002467235.1| - 6.5 6.7 5.6 8.4 6.3 0.1 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G ABC_tran PF00005.27 gi|219852804|ref|YP_002467236.1| - 2.7e-26 92.7 0.0 4.6e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852804|ref|YP_002467236.1| - 2.9e-12 47.0 2.3 7.1e-08 32.6 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219852804|ref|YP_002467236.1| - 2.2e-06 28.3 0.4 4.7e-06 27.2 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|219852804|ref|YP_002467236.1| - 0.00058 20.4 1.4 0.0012 19.4 0.8 1.4 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|219852804|ref|YP_002467236.1| - 0.0089 15.7 0.0 0.05 13.2 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|219852804|ref|YP_002467236.1| - 0.016 13.9 0.3 2.5 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain TusA PF01206.17 gi|219852804|ref|YP_002467236.1| - 0.11 12.3 0.0 0.81 9.6 0.0 2.2 2 0 0 2 2 2 0 Sulfurtransferase TusA SMC_N PF02463.19 gi|219852804|ref|YP_002467236.1| - 0.15 11.4 0.0 6.9 6.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.24 gi|219852805|ref|YP_002467237.1| - 1.1e-25 90.3 15.5 1.1e-25 90.3 15.5 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219852805|ref|YP_002467237.1| - 2e-09 37.0 25.1 4.2e-09 36.0 25.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein 7TM_GPCR_Sru PF10322.9 gi|219852805|ref|YP_002467237.1| - 0.0019 17.6 9.7 0.0055 16.1 3.9 2.1 2 0 0 2 2 2 2 Serpentine type 7TM GPCR chemoreceptor Sru ABC2_membrane_2 PF12679.7 gi|219852805|ref|YP_002467237.1| - 0.014 14.7 18.7 0.022 14.0 13.8 2.5 1 1 1 2 2 2 0 ABC-2 family transporter protein HATPase_c PF02518.26 gi|219852806|ref|YP_002467238.1| - 2.1e-19 70.1 0.0 6.7e-19 68.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|219852806|ref|YP_002467238.1| - 4.9e-05 23.3 0.0 0.00011 22.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HSD3 PF15244.6 gi|219852806|ref|YP_002467238.1| - 0.0028 17.2 0.1 0.0041 16.7 0.1 1.1 1 0 0 1 1 1 1 Spermatogenesis-associated protein 7, or HSD3 HisKA PF00512.25 gi|219852806|ref|YP_002467238.1| - 0.0055 16.7 1.0 0.099 12.7 0.1 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 gi|219852806|ref|YP_002467238.1| - 0.012 16.0 0.0 0.059 13.8 0.0 2.2 1 1 0 1 1 1 0 HAMP domain A2M_recep PF07677.14 gi|219852806|ref|YP_002467238.1| - 0.054 14.2 0.3 7 7.4 0.2 2.9 2 0 0 2 2 2 0 A-macroglobulin receptor binding domain DUF948 PF06103.11 gi|219852807|ref|YP_002467239.1| - 0.00066 19.9 1.2 0.0087 16.3 1.2 2.0 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) MCPsignal PF00015.21 gi|219852807|ref|YP_002467239.1| - 0.0023 17.8 0.7 0.24 11.2 0.8 2.0 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 gi|219852807|ref|YP_002467239.1| - 0.0051 16.8 0.3 0.0059 16.6 0.3 1.1 1 0 0 1 1 1 1 Laminin Domain II ABC2_membrane_3 PF12698.7 gi|219852807|ref|YP_002467239.1| - 0.025 13.7 0.4 0.029 13.5 0.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DivIC PF04977.15 gi|219852807|ref|YP_002467239.1| - 0.027 14.2 0.1 0.041 13.6 0.1 1.3 1 0 0 1 1 1 0 Septum formation initiator DUF4134 PF13572.6 gi|219852807|ref|YP_002467239.1| - 0.033 14.5 0.3 0.29 11.5 0.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) DUF5344 PF17279.2 gi|219852807|ref|YP_002467239.1| - 0.061 13.9 0.1 0.079 13.6 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5344) KdpA PF03814.15 gi|219852807|ref|YP_002467239.1| - 0.08 11.1 0.2 0.088 11.0 0.2 1.0 1 0 0 1 1 1 0 Potassium-transporting ATPase A subunit DUF1465 PF07323.12 gi|219852807|ref|YP_002467239.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) GAT PF03127.14 gi|219852807|ref|YP_002467239.1| - 0.13 12.6 0.9 0.2 12.0 0.9 1.4 1 1 0 1 1 1 0 GAT domain NPV_P10 PF05531.12 gi|219852807|ref|YP_002467239.1| - 0.16 12.5 4.0 0.35 11.4 1.0 2.0 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Ribonucleas_3_3 PF14622.6 gi|219852808|ref|YP_002467240.1| - 8.8e-16 58.2 0.0 1.1e-15 58.0 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|219852808|ref|YP_002467240.1| - 6.9e-10 39.5 0.0 1.4e-09 38.6 0.0 1.5 1 1 0 1 1 1 1 Ribonuclease III domain Lipase_GDSL_2 PF13472.6 gi|219852809|ref|YP_002467241.1| - 4.9e-20 72.7 1.1 9.2e-20 71.8 1.1 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|219852809|ref|YP_002467241.1| - 6.1e-11 42.7 0.2 9.1e-11 42.1 0.2 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF2589 PF11655.8 gi|219852809|ref|YP_002467241.1| - 0.034 14.5 0.1 0.053 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2589) HZS_alpha PF18582.1 gi|219852809|ref|YP_002467241.1| - 0.15 12.5 0.3 0.3 11.6 0.3 1.5 1 0 0 1 1 1 0 Hydrazine synthase alpha subunit middle domain GTP_EFTU_D2 PF03144.25 gi|219852810|ref|YP_002467242.1| - 8e-11 42.2 0.7 3.2e-10 40.3 1.1 1.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|219852810|ref|YP_002467242.1| - 0.0076 16.1 0.4 0.016 15.1 0.4 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 DUF3126 PF11324.8 gi|219852810|ref|YP_002467242.1| - 0.25 11.2 0.8 0.6 10.0 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3126) SNO PF01174.19 gi|219852811|ref|YP_002467243.1| - 3.7e-49 167.1 0.0 4.6e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|219852811|ref|YP_002467243.1| - 3.7e-06 26.7 0.0 4.8e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain ThiJ_like PF17124.5 gi|219852811|ref|YP_002467243.1| - 0.00042 20.1 0.0 0.0028 17.3 0.0 2.0 2 0 0 2 2 2 1 ThiJ/PfpI family-like SOR_SNZ PF01680.17 gi|219852812|ref|YP_002467244.1| - 1.3e-103 345.1 7.0 1.3e-103 345.1 7.0 1.4 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|219852812|ref|YP_002467244.1| - 5e-09 35.8 3.9 5.4e-07 29.2 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|219852812|ref|YP_002467244.1| - 0.00061 19.0 0.1 0.16 11.0 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TetR_C_27 PF17935.1 gi|219852812|ref|YP_002467244.1| - 0.0091 16.0 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain NMO PF03060.15 gi|219852812|ref|YP_002467244.1| - 0.0099 15.3 0.1 0.0099 15.3 0.1 2.0 2 1 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.21 gi|219852812|ref|YP_002467244.1| - 0.025 13.8 0.0 1.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase CobD_Cbib PF03186.13 gi|219852813|ref|YP_002467245.1| - 6.9e-81 271.5 0.4 8.5e-81 271.2 0.4 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Trm112p PF03966.16 gi|219852815|ref|YP_002467247.1| - 1.9e-09 38.0 0.8 3.3e-09 37.2 0.8 1.4 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.6 gi|219852815|ref|YP_002467247.1| - 0.0018 18.6 0.5 0.002 18.5 0.5 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|219852815|ref|YP_002467247.1| - 0.0045 16.5 0.3 0.0063 16.0 0.3 1.4 1 1 0 1 1 1 1 TFIIB zinc-binding HscB_4_cys PF18256.1 gi|219852815|ref|YP_002467247.1| - 0.011 15.6 0.2 0.011 15.6 0.2 2.1 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Cys_rich_KTR PF14205.6 gi|219852815|ref|YP_002467247.1| - 0.011 15.5 0.1 0.015 15.1 0.1 1.2 1 0 0 1 1 1 0 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.12 gi|219852815|ref|YP_002467247.1| - 0.037 14.3 1.7 0.15 12.3 1.7 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Adenylsucc_synt PF00709.21 gi|219852816|ref|YP_002467248.1| - 1.6e-78 264.5 4.0 2.2e-38 132.3 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase GXGXG PF01493.19 gi|219852817|ref|YP_002467249.1| - 9.1e-10 38.4 20.4 0.00011 21.9 8.9 2.7 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|219852818|ref|YP_002467250.1| - 4e-72 244.2 0.0 5e-72 243.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|219852818|ref|YP_002467250.1| - 9.2e-06 25.2 0.0 0.0021 17.4 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|219852818|ref|YP_002467250.1| - 0.088 13.1 0.6 0.25 11.7 0.2 2.0 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Molybdopterin PF00384.22 gi|219852819|ref|YP_002467251.1| - 6.3e-14 51.8 0.1 4.1e-13 49.1 0.1 2.1 1 1 1 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|219852820|ref|YP_002467252.1| - 9.4e-15 54.6 0.0 1.2e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molydop_binding PF01568.21 gi|219852821|ref|YP_002467253.1| - 3.8e-15 55.9 0.0 4.6e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.16 gi|219852822|ref|YP_002467254.1| - 5.3e-49 165.3 0.0 6e-49 165.1 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|219852823|ref|YP_002467255.1| - 1.3e-16 60.7 0.0 9.1e-16 57.9 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|219852823|ref|YP_002467255.1| - 1.9e-16 59.1 40.3 4.1e-05 23.2 3.3 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852823|ref|YP_002467255.1| - 9.2e-15 54.5 29.0 1.6e-08 34.6 9.0 3.9 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852823|ref|YP_002467255.1| - 5.1e-14 52.2 25.0 3.6e-07 30.2 8.9 3.5 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219852823|ref|YP_002467255.1| - 1.2e-13 51.4 30.5 4.4e-07 30.4 10.4 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852823|ref|YP_002467255.1| - 2.2e-11 43.7 26.8 0.0023 18.0 12.5 4.0 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852823|ref|YP_002467255.1| - 5.7e-11 43.2 19.1 0.011 16.6 0.2 4.7 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|219852823|ref|YP_002467255.1| - 6.5e-10 38.7 33.4 0.0027 17.7 2.8 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852823|ref|YP_002467255.1| - 2.6e-08 33.5 41.7 0.011 15.8 2.0 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|219852823|ref|YP_002467255.1| - 2e-07 30.8 0.5 4e-07 29.7 0.4 1.5 2 0 0 2 2 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|219852823|ref|YP_002467255.1| - 1.2e-06 27.9 0.7 2e-06 27.1 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|219852823|ref|YP_002467255.1| - 1.5e-06 28.7 28.8 4.8e-06 27.0 3.2 4.2 3 1 2 5 5 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852823|ref|YP_002467255.1| - 2e-06 28.1 27.6 0.00043 20.7 9.5 4.0 2 2 2 4 4 4 4 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|219852823|ref|YP_002467255.1| - 9.3e-06 25.8 0.0 9.3e-06 25.8 0.0 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|219852823|ref|YP_002467255.1| - 2.5e-05 23.6 0.1 4e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_13 PF13370.6 gi|219852823|ref|YP_002467255.1| - 3.3e-05 24.3 23.2 0.33 11.5 1.0 4.8 4 0 0 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|219852823|ref|YP_002467255.1| - 0.00016 21.9 42.2 0.015 15.7 1.2 5.6 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219852823|ref|YP_002467255.1| - 0.00029 21.6 23.9 0.66 10.8 1.1 4.7 4 0 0 4 4 4 3 4Fe-4S dicluster domain DAO PF01266.24 gi|219852823|ref|YP_002467255.1| - 0.00087 19.0 0.4 0.00087 19.0 0.4 2.9 3 0 0 3 3 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|219852823|ref|YP_002467255.1| - 0.0017 18.9 0.2 0.0017 18.9 0.2 2.8 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|219852823|ref|YP_002467255.1| - 0.0017 17.7 1.0 0.004 16.5 0.6 1.7 1 1 1 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|219852823|ref|YP_002467255.1| - 0.0044 16.3 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|219852823|ref|YP_002467255.1| - 0.0048 16.2 0.0 0.009 15.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|219852823|ref|YP_002467255.1| - 0.0073 15.1 1.9 0.0073 15.1 1.9 1.5 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|219852823|ref|YP_002467255.1| - 0.013 14.8 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|219852823|ref|YP_002467255.1| - 0.014 14.5 0.0 0.92 8.5 0.1 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|219852823|ref|YP_002467255.1| - 0.03 13.6 0.0 0.048 12.9 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Fer4_15 PF13459.6 gi|219852823|ref|YP_002467255.1| - 1.4 9.7 25.9 2.9 8.7 1.0 4.6 3 1 1 4 4 4 0 4Fe-4S single cluster domain CCG PF02754.16 gi|219852824|ref|YP_002467256.1| - 1.1e-31 108.8 0.9 1e-17 64.1 0.2 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|219852825|ref|YP_002467257.1| - 2.3e-10 40.8 5.1 4.2e-10 39.9 5.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852825|ref|YP_002467257.1| - 5.3e-09 36.1 17.1 4.1e-08 33.3 7.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219852825|ref|YP_002467257.1| - 2.9e-08 34.1 14.2 4.5e-07 30.3 5.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852825|ref|YP_002467257.1| - 1.2e-06 28.6 7.8 3.8e-06 26.9 8.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852825|ref|YP_002467257.1| - 1.9e-05 24.8 10.5 0.005 17.2 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852825|ref|YP_002467257.1| - 5.7e-05 23.6 8.5 0.00021 21.8 8.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852825|ref|YP_002467257.1| - 9.9e-05 23.2 4.3 0.26 12.3 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|219852825|ref|YP_002467257.1| - 0.0096 15.7 11.6 0.23 11.4 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852825|ref|YP_002467257.1| - 0.01 15.9 14.4 0.33 11.1 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219852825|ref|YP_002467257.1| - 0.052 13.7 8.1 0.22 11.7 8.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|219852825|ref|YP_002467257.1| - 0.088 13.0 2.6 3.7 7.8 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219852825|ref|YP_002467257.1| - 0.27 12.3 14.4 0.39 11.8 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219852825|ref|YP_002467257.1| - 1.6 9.6 10.5 4.2 8.3 3.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852826|ref|YP_002467258.1| - 5.3e-40 133.7 94.0 1.2e-07 31.2 4.6 8.5 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852826|ref|YP_002467258.1| - 1.5e-31 108.8 70.3 1.5e-08 35.1 11.3 4.9 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|219852826|ref|YP_002467258.1| - 3e-26 91.3 65.4 2.7e-07 30.6 8.0 5.4 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852826|ref|YP_002467258.1| - 4.3e-26 91.6 60.8 1.3e-05 26.1 8.8 7.2 6 1 1 7 7 7 7 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|219852826|ref|YP_002467258.1| - 1.2e-24 86.2 70.2 3.6e-06 27.0 12.5 6.3 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852826|ref|YP_002467258.1| - 3.9e-21 74.9 71.5 0.00022 21.3 10.6 7.2 5 3 3 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219852826|ref|YP_002467258.1| - 8.4e-21 73.1 87.9 7.4e-06 25.8 4.1 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852826|ref|YP_002467258.1| - 3.5e-18 64.5 83.7 2.6e-05 24.0 2.7 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219852826|ref|YP_002467258.1| - 1.3e-13 51.3 64.8 0.00089 19.8 6.9 5.9 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852826|ref|YP_002467258.1| - 2.4e-13 50.3 64.3 0.00081 19.8 8.0 6.7 4 3 3 7 7 7 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852826|ref|YP_002467258.1| - 4.8e-06 26.7 7.4 0.00046 20.5 0.7 8.1 8 0 0 8 8 6 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|219852826|ref|YP_002467258.1| - 7.2e-05 23.4 66.5 0.006 17.3 0.3 8.0 6 3 1 7 7 7 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|219852826|ref|YP_002467258.1| - 0.00075 20.0 84.6 0.021 15.4 2.9 8.5 8 1 0 8 8 7 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|219852826|ref|YP_002467258.1| - 0.0055 17.6 16.5 0.014 16.3 3.5 8.4 8 0 0 8 8 7 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219852826|ref|YP_002467258.1| - 0.025 15.4 0.2 0.025 15.4 0.2 8.2 5 2 4 9 9 9 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852827|ref|YP_002467259.1| - 2.4e-16 58.8 14.8 1.5e-08 34.1 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852827|ref|YP_002467259.1| - 4.6e-13 49.5 8.1 6.5e-13 49.0 8.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852827|ref|YP_002467259.1| - 1e-12 48.8 18.1 1.5e-09 38.6 9.1 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|219852827|ref|YP_002467259.1| - 6.6e-12 45.0 14.8 7.8e-06 25.7 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219852827|ref|YP_002467259.1| - 2e-11 43.3 13.4 8.4e-06 25.6 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852827|ref|YP_002467259.1| - 2.3e-11 43.7 5.9 4.4e-11 42.8 5.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852827|ref|YP_002467259.1| - 6.3e-11 42.2 9.2 1.4e-10 41.1 9.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852827|ref|YP_002467259.1| - 3.3e-08 33.5 15.0 8.6e-07 29.0 15.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852827|ref|YP_002467259.1| - 6.5e-08 32.5 9.1 0.00047 20.5 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219852827|ref|YP_002467259.1| - 1.1e-06 29.1 10.7 1.5e-05 25.4 11.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219852827|ref|YP_002467259.1| - 7.3e-06 26.7 5.7 0.0075 17.1 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219852827|ref|YP_002467259.1| - 1.1e-05 25.8 12.5 9.4e-05 22.8 12.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219852827|ref|YP_002467259.1| - 4.4e-05 24.1 23.3 0.0025 18.6 8.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|219852827|ref|YP_002467259.1| - 0.00011 22.9 10.4 0.052 14.3 1.4 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|219852827|ref|YP_002467259.1| - 0.0034 17.9 13.1 0.15 12.6 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I DUF3954 PF13128.6 gi|219852827|ref|YP_002467259.1| - 0.033 14.0 0.4 0.054 13.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3954) Fer4_19 PF06902.11 gi|219852827|ref|YP_002467259.1| - 0.22 11.6 11.3 0.3 11.2 0.6 3.0 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.6 gi|219852827|ref|YP_002467259.1| - 0.49 10.6 14.3 2.2 8.5 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain FTR_C PF02741.15 gi|219852828|ref|YP_002467260.1| - 3.7e-66 221.7 2.9 5.3e-66 221.2 2.9 1.2 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|219852828|ref|YP_002467260.1| - 1.8e-59 199.8 0.0 3.2e-59 198.9 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Rubredoxin PF00301.20 gi|219852829|ref|YP_002467261.1| - 1.9e-20 72.6 3.0 2.1e-20 72.5 3.0 1.1 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|219852829|ref|YP_002467261.1| - 0.019 15.0 1.3 0.029 14.5 1.3 1.4 1 1 0 1 1 1 0 PHD-finger zinc_ribbon_10 PF10058.9 gi|219852829|ref|YP_002467261.1| - 0.023 14.4 1.5 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|219852829|ref|YP_002467261.1| - 0.027 14.6 2.4 0.47 10.6 2.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|219852829|ref|YP_002467261.1| - 0.048 13.3 2.8 0.58 9.8 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HalOD2 PF18547.1 gi|219852829|ref|YP_002467261.1| - 0.057 13.3 0.2 0.14 12.1 0.2 1.6 1 1 0 1 1 1 0 Halobacterial output domain 2 Zn_ribbon_SprT PF17283.2 gi|219852829|ref|YP_002467261.1| - 0.091 12.7 4.2 0.57 10.1 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|219852829|ref|YP_002467261.1| - 0.25 11.0 3.6 2.5 7.9 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit VATC PF18716.1 gi|219852829|ref|YP_002467261.1| - 0.26 11.2 5.0 4.2 7.3 0.1 2.4 1 1 1 2 2 2 0 Vms1-associating treble clef domain Rubredoxin_2 PF18073.1 gi|219852829|ref|YP_002467261.1| - 0.36 10.6 0.5 0.36 10.6 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1922 PF09082.10 gi|219852830|ref|YP_002467262.1| - 0.00027 21.2 0.1 0.00033 20.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zf-ACC PF17848.1 gi|219852830|ref|YP_002467262.1| - 0.02 15.0 2.5 0.45 10.6 0.0 2.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain NOB1_Zn_bind PF08772.11 gi|219852830|ref|YP_002467262.1| - 0.059 13.5 0.1 0.073 13.2 0.1 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Kinase-like PF14531.6 gi|219852830|ref|YP_002467262.1| - 0.14 11.5 0.0 0.16 11.3 0.0 1.0 1 0 0 1 1 1 0 Kinase-like Cys_rich_CPCC PF14206.6 gi|219852830|ref|YP_002467262.1| - 0.15 11.9 0.8 0.25 11.2 0.8 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC TF_Zn_Ribbon PF08271.12 gi|219852830|ref|YP_002467262.1| - 1.5 8.4 4.9 0.65 9.6 2.2 1.8 2 1 0 2 2 2 0 TFIIB zinc-binding Response_reg PF00072.24 gi|219852831|ref|YP_002467263.1| - 4.2e-29 101.0 0.4 4.7e-29 100.8 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheX PF13690.6 gi|219852832|ref|YP_002467264.1| - 3.4e-10 40.0 0.2 3.6e-06 27.1 0.0 2.5 2 1 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.12 gi|219852832|ref|YP_002467264.1| - 5.4e-06 26.2 1.8 5.1e-05 23.1 0.0 2.5 2 1 0 2 2 2 1 CheC-like family HATPase_c PF02518.26 gi|219852833|ref|YP_002467265.1| - 1.3e-20 74.0 0.4 7.3e-20 71.5 0.0 2.3 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|219852833|ref|YP_002467265.1| - 2.1e-13 50.8 0.0 8.5e-13 48.8 0.1 2.0 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|219852833|ref|YP_002467265.1| - 1.2e-08 35.2 0.0 4e-08 33.5 0.0 2.0 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|219852833|ref|YP_002467265.1| - 4.3e-08 33.6 0.0 9.5e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|219852833|ref|YP_002467265.1| - 2.4e-06 28.2 0.1 4.6e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|219852833|ref|YP_002467265.1| - 6e-06 26.2 0.0 1.3e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|219852833|ref|YP_002467265.1| - 6.2e-05 23.2 0.0 0.00017 21.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|219852833|ref|YP_002467265.1| - 0.00062 19.7 0.0 0.002 18.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|219852833|ref|YP_002467265.1| - 0.00072 19.6 0.6 0.0023 17.9 0.3 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|219852833|ref|YP_002467265.1| - 0.0096 15.9 0.0 0.029 14.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|219852833|ref|YP_002467265.1| - 0.039 13.8 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Fe-ADH PF00465.19 gi|219852834|ref|YP_002467266.1| - 2.2e-108 362.4 0.8 2.4e-108 362.2 0.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|219852834|ref|YP_002467266.1| - 2.5e-17 63.4 3.5 2e-10 40.8 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PAS PF00989.25 gi|219852835|ref|YP_002467267.1| - 7e-27 93.7 0.0 3.3e-12 46.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852835|ref|YP_002467267.1| - 1.2e-18 67.3 0.0 3.6e-08 33.6 0.0 2.6 2 1 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|219852835|ref|YP_002467267.1| - 2e-14 53.2 0.1 1.4e-06 28.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|219852835|ref|YP_002467267.1| - 4.3e-08 33.4 0.1 0.011 16.0 0.0 3.0 2 1 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|219852835|ref|YP_002467267.1| - 0.0003 20.8 3.2 0.0017 18.4 0.2 3.0 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain RNase_H_2 PF13482.6 gi|219852836|ref|YP_002467268.1| - 9.7e-37 126.5 0.0 1.5e-36 125.9 0.0 1.3 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.19 gi|219852836|ref|YP_002467268.1| - 9.8e-05 21.6 0.0 0.00017 20.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_lambd_f PF10391.9 gi|219852836|ref|YP_002467268.1| - 0.00016 21.4 0.0 0.00032 20.5 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DNA_pol_B_exo2 PF10108.9 gi|219852836|ref|YP_002467268.1| - 0.00022 21.0 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_5 PF14520.6 gi|219852836|ref|YP_002467268.1| - 0.029 15.0 0.0 0.059 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|219852836|ref|YP_002467268.1| - 0.032 14.4 0.0 0.061 13.6 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus DEAD PF00270.29 gi|219852837|ref|YP_002467269.1| - 1.6e-25 89.8 0.0 8.4e-25 87.5 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|219852837|ref|YP_002467269.1| - 5.5e-18 65.5 1.6 2.2e-17 63.5 1.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|219852837|ref|YP_002467269.1| - 2.9e-12 46.9 0.0 1.3e-11 44.8 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|219852837|ref|YP_002467269.1| - 0.0017 18.4 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PolC_DP2 PF03833.13 gi|219852838|ref|YP_002467270.1| - 0 1266.8 0.0 0 1263.5 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|219852838|ref|YP_002467270.1| - 1.5e-06 28.2 0.0 3.7e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Intein splicing domain DZR PF12773.7 gi|219852838|ref|YP_002467270.1| - 1.6 8.8 19.7 0.25 11.4 0.5 3.5 2 1 1 3 3 3 0 Double zinc ribbon HypA PF01155.19 gi|219852838|ref|YP_002467270.1| - 3.1 7.8 14.6 2.2 8.3 0.1 3.4 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|219852838|ref|YP_002467270.1| - 4.7 7.2 14.2 8.2 6.4 6.6 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF4455 PF14643.6 gi|219852839|ref|YP_002467271.1| - 0.046 12.4 0.0 0.046 12.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) HisKA_7TM PF16927.5 gi|219852840|ref|YP_002467272.1| - 2.6e-53 181.3 28.1 3.5e-53 180.9 28.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|219852840|ref|YP_002467272.1| - 2.2e-08 34.6 0.0 3.8e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219852840|ref|YP_002467272.1| - 1.3e-06 28.4 0.0 4.3e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219852840|ref|YP_002467272.1| - 1.6e-06 28.0 0.0 4.4e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|219852840|ref|YP_002467272.1| - 2.4e-05 24.5 0.1 6.8e-05 23.1 0.1 1.8 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|219852840|ref|YP_002467272.1| - 0.00015 21.4 0.0 0.00035 20.2 0.0 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|219852840|ref|YP_002467272.1| - 0.00024 21.1 0.1 0.0005 20.1 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|219852840|ref|YP_002467272.1| - 0.0067 16.4 0.0 0.02 14.9 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|219852840|ref|YP_002467272.1| - 0.01 16.1 0.0 0.032 14.5 0.0 1.8 1 0 0 1 1 1 0 PAS domain YobH PF13996.6 gi|219852840|ref|YP_002467272.1| - 0.057 13.5 0.6 0.2 11.7 0.6 1.9 1 0 0 1 1 1 0 YobH-like protein HisKA_4TM PF16926.5 gi|219852840|ref|YP_002467272.1| - 0.12 11.9 0.1 0.12 11.9 0.1 3.0 2 1 1 3 3 3 0 Archaeal 4TM region of histidine kinase DUF1011 PF06237.12 gi|219852840|ref|YP_002467272.1| - 5 7.5 9.9 0.37 11.1 1.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1011) HisKA_7TM PF16927.5 gi|219852841|ref|YP_002467273.1| - 2.1e-50 171.8 20.5 2.7e-50 171.5 20.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|219852841|ref|YP_002467273.1| - 1.5e-09 38.3 0.0 3.2e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219852841|ref|YP_002467273.1| - 1.2e-07 31.8 0.0 2.7e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219852841|ref|YP_002467273.1| - 1.7e-07 31.1 0.0 4.8e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|219852841|ref|YP_002467273.1| - 2.3e-05 24.6 0.1 0.00019 21.7 0.1 2.3 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|219852841|ref|YP_002467273.1| - 0.00089 18.9 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|219852841|ref|YP_002467273.1| - 0.0019 18.2 0.4 0.0058 16.6 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain YqjK PF13997.6 gi|219852841|ref|YP_002467273.1| - 0.0036 17.5 0.0 0.014 15.6 0.0 2.0 1 0 0 1 1 1 1 YqjK-like protein HATPase_c_2 PF13581.6 gi|219852841|ref|YP_002467273.1| - 0.0044 17.0 0.0 0.0098 15.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|219852841|ref|YP_002467273.1| - 0.02 14.4 0.1 0.02 14.4 0.1 2.3 2 1 0 2 2 2 0 Archaeal 4TM region of histidine kinase PAS_10 PF13596.6 gi|219852841|ref|YP_002467273.1| - 0.034 14.7 0.0 0.095 13.3 0.0 1.8 2 0 0 2 2 1 0 PAS domain HATPase_c_3 PF13589.6 gi|219852841|ref|YP_002467273.1| - 0.089 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219852841|ref|YP_002467273.1| - 0.14 12.4 0.0 0.42 10.9 0.0 1.9 1 0 0 1 1 1 0 PAS domain BaxI_1 PF12811.7 gi|219852842|ref|YP_002467274.1| - 0.66 9.5 9.7 0.92 9.0 9.7 1.2 1 0 0 1 1 1 0 Bax inhibitor 1 like PAP2 PF01569.21 gi|219852843|ref|YP_002467275.1| - 2.1e-12 47.0 3.6 2.1e-12 47.0 3.6 2.7 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|219852843|ref|YP_002467275.1| - 0.00018 21.3 12.6 0.00018 21.3 12.6 3.1 2 2 1 3 3 3 1 PAP2 superfamily V4R PF02830.18 gi|219852844|ref|YP_002467276.1| - 8e-18 64.2 0.5 1.4e-17 63.5 0.5 1.3 1 0 0 1 1 1 1 V4R domain MarR_2 PF12802.7 gi|219852844|ref|YP_002467276.1| - 1.5e-07 31.2 0.1 4e-07 29.8 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|219852844|ref|YP_002467276.1| - 1.7e-06 27.9 0.2 4.7e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|219852844|ref|YP_002467276.1| - 3.8e-06 26.7 0.1 6.7e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|219852844|ref|YP_002467276.1| - 9e-05 22.3 1.1 0.00013 21.8 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|219852844|ref|YP_002467276.1| - 0.0021 17.8 0.0 0.0049 16.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|219852844|ref|YP_002467276.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|219852844|ref|YP_002467276.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_24 PF13412.6 gi|219852844|ref|YP_002467276.1| - 0.023 14.2 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|219852844|ref|YP_002467276.1| - 0.066 13.7 0.1 0.12 12.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|219852844|ref|YP_002467276.1| - 0.067 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 DprA winged helix domain HTH_40 PF14493.6 gi|219852844|ref|YP_002467276.1| - 0.084 13.3 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|219852844|ref|YP_002467276.1| - 0.2 11.5 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Flavodoxin_1 PF00258.25 gi|219852845|ref|YP_002467277.1| - 5.1e-13 49.4 0.0 1.2e-12 48.2 0.0 1.7 2 0 0 2 2 2 1 Flavodoxin Lactamase_B PF00753.27 gi|219852845|ref|YP_002467277.1| - 5.9e-13 49.3 0.1 1.1e-12 48.4 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219852845|ref|YP_002467277.1| - 1.4e-06 28.0 0.1 8.7e-06 25.4 0.0 2.2 3 0 0 3 3 3 1 Beta-lactamase superfamily domain PGM_PMM_II PF02879.16 gi|219852845|ref|YP_002467277.1| - 0.014 16.0 0.1 1.1 9.9 0.0 2.9 3 0 0 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_I PF02878.16 gi|219852845|ref|YP_002467277.1| - 0.034 13.9 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FMN_red PF03358.15 gi|219852845|ref|YP_002467277.1| - 0.074 12.8 0.0 0.19 11.5 0.0 1.7 1 1 0 1 1 1 0 NADPH-dependent FMN reductase PAS_4 PF08448.10 gi|219852846|ref|YP_002467278.1| - 4.2e-31 107.5 9.1 4.7e-11 42.9 0.1 5.6 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|219852846|ref|YP_002467278.1| - 3e-27 94.1 0.2 1.4e-08 34.5 0.0 4.8 4 0 0 4 4 4 3 PAS domain PAS_9 PF13426.7 gi|219852846|ref|YP_002467278.1| - 3.1e-25 88.4 0.0 3e-07 30.6 0.0 5.1 4 1 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|219852846|ref|YP_002467278.1| - 1.1e-21 77.1 0.0 2.6e-21 75.9 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|219852846|ref|YP_002467278.1| - 3.7e-20 72.6 2.8 6.6e-19 68.6 0.3 3.3 3 0 0 3 3 3 1 GAF domain PAS PF00989.25 gi|219852846|ref|YP_002467278.1| - 1.8e-19 69.8 2.4 1.5e-06 28.2 0.1 5.7 6 0 0 6 6 6 4 PAS fold GAF PF01590.26 gi|219852846|ref|YP_002467278.1| - 4.6e-07 30.5 0.1 6.7e-06 26.8 0.0 2.7 2 2 1 3 3 3 1 GAF domain PAS_3 PF08447.12 gi|219852846|ref|YP_002467278.1| - 8.8e-05 22.7 0.0 18 5.7 0.0 5.2 4 1 1 5 5 5 0 PAS fold PAS_7 PF12860.7 gi|219852846|ref|YP_002467278.1| - 0.016 15.4 12.9 0.65 10.2 0.0 6.2 7 2 0 7 7 7 0 PAS fold HisKA PF00512.25 gi|219852846|ref|YP_002467278.1| - 0.032 14.3 1.7 0.1 12.7 0.1 2.9 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|219852846|ref|YP_002467278.1| - 0.037 14.6 0.1 11 6.7 0.0 3.7 3 0 0 3 3 3 0 PAS domain MLTR_LBD PF17765.1 gi|219852846|ref|YP_002467278.1| - 0.046 13.8 0.1 0.52 10.4 0.0 2.5 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain GAF_3 PF13492.6 gi|219852846|ref|YP_002467278.1| - 0.071 13.5 0.1 0.31 11.4 0.0 2.2 2 0 0 2 2 2 0 GAF domain Response_reg PF00072.24 gi|219852848|ref|YP_002467280.1| - 2.2e-18 66.4 0.1 2.6e-18 66.2 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 gi|219852849|ref|YP_002467281.1| - 0.00017 21.2 0.2 0.00019 21.1 0.2 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 gi|219852850|ref|YP_002467282.1| - 1.4e-13 50.6 0.0 1.9e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 gi|219852851|ref|YP_002467283.1| - 2.4e-42 144.7 19.1 2.4e-42 144.7 19.1 6.5 3 3 4 7 7 7 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219852851|ref|YP_002467283.1| - 2.4e-27 95.3 0.0 2.7e-12 46.9 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219852851|ref|YP_002467283.1| - 6.6e-18 64.9 0.0 1.2e-07 31.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219852851|ref|YP_002467283.1| - 1.2e-16 60.6 0.1 3.9e-08 33.3 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|219852851|ref|YP_002467283.1| - 8.7e-06 25.6 0.0 0.18 11.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain Laminin_I PF06008.14 gi|219852851|ref|YP_002467283.1| - 0.00019 21.2 22.9 0.028 14.1 1.6 3.3 1 1 3 4 4 4 2 Laminin Domain I HAMP PF00672.25 gi|219852851|ref|YP_002467283.1| - 0.00071 19.9 5.8 40 4.7 0.0 8.6 9 2 1 10 10 8 0 HAMP domain Spc7 PF08317.11 gi|219852851|ref|YP_002467283.1| - 0.0015 17.5 12.5 0.0035 16.3 8.8 2.9 4 0 0 4 4 4 1 Spc7 kinetochore protein DUF948 PF06103.11 gi|219852851|ref|YP_002467283.1| - 0.0026 18.0 32.2 0.29 11.4 1.6 7.6 8 2 1 9 9 8 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|219852851|ref|YP_002467283.1| - 0.0042 17.1 20.4 0.12 12.4 3.3 6.4 5 2 1 6 6 6 1 Protein of unknown function (DUF1664) HAMP_N3 PF18575.1 gi|219852851|ref|YP_002467283.1| - 0.0099 15.4 0.1 51 3.6 0.0 4.8 5 0 0 5 5 4 0 HAMP N-terminal domain 3 PAS_10 PF13596.6 gi|219852851|ref|YP_002467283.1| - 0.015 15.9 0.0 0.74 10.4 0.0 3.3 3 0 0 3 3 2 0 PAS domain Robl_LC7 PF03259.17 gi|219852851|ref|YP_002467283.1| - 0.048 13.4 2.1 2.9 7.7 0.0 4.0 3 1 1 4 4 4 0 Roadblock/LC7 domain Sec34 PF04136.15 gi|219852851|ref|YP_002467283.1| - 0.056 13.3 9.0 3.3 7.6 3.2 3.8 2 1 1 3 3 3 0 Sec34-like family Noelin-1 PF12308.8 gi|219852851|ref|YP_002467283.1| - 0.071 13.1 3.6 0.16 11.9 0.9 2.9 2 1 0 2 2 2 0 Neurogenesis glycoprotein COG2 PF06148.11 gi|219852851|ref|YP_002467283.1| - 0.15 12.2 12.6 5.7 7.0 0.4 5.6 4 2 2 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 PAS_7 PF12860.7 gi|219852851|ref|YP_002467283.1| - 0.17 12.1 3.5 2.1 8.6 0.0 3.9 3 1 1 4 4 3 0 PAS fold ISG65-75 PF11727.8 gi|219852851|ref|YP_002467283.1| - 0.2 10.9 10.7 0.02 14.1 4.8 2.3 2 0 0 2 2 2 0 Invariant surface glycoprotein APG17 PF04108.12 gi|219852851|ref|YP_002467283.1| - 0.32 10.1 9.3 1.2 8.1 3.9 3.0 2 0 0 2 2 2 0 Autophagy protein Apg17 Ssu72 PF04722.13 gi|219852851|ref|YP_002467283.1| - 0.36 10.4 5.5 0.19 11.3 0.3 2.5 2 1 0 2 2 2 0 Ssu72-like protein PIN_12 PF16289.5 gi|219852851|ref|YP_002467283.1| - 0.84 10.1 3.2 2.8 8.4 2.5 2.1 2 0 0 2 2 2 0 PIN domain TMPIT PF07851.13 gi|219852851|ref|YP_002467283.1| - 1 8.6 7.1 0.54 9.5 4.1 1.9 2 0 0 2 2 2 0 TMPIT-like protein Vps53_N PF04100.12 gi|219852851|ref|YP_002467283.1| - 1.9 7.3 15.9 0.46 9.4 8.1 2.4 2 0 0 2 2 2 0 Vps53-like, N-terminal IFT57 PF10498.9 gi|219852851|ref|YP_002467283.1| - 2.2 7.2 9.8 1.2 8.0 6.5 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Laminin_II PF06009.12 gi|219852851|ref|YP_002467283.1| - 2.3 8.2 26.1 1.8 8.6 9.3 5.4 4 2 2 6 6 5 0 Laminin Domain II SKA2 PF16740.5 gi|219852851|ref|YP_002467283.1| - 3.6 7.4 8.1 13 5.6 2.6 3.6 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 2 DUF1216 PF06746.11 gi|219852851|ref|YP_002467283.1| - 3.7 7.6 16.4 0.44 10.6 11.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1216) DUF724 PF05266.14 gi|219852851|ref|YP_002467283.1| - 3.8 7.3 7.5 2.5 7.9 4.3 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF724) Fib_alpha PF08702.10 gi|219852851|ref|YP_002467283.1| - 5.1 7.3 11.4 31 4.7 5.8 3.4 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.9 gi|219852851|ref|YP_002467283.1| - 7.1 7.4 16.7 25 5.6 3.7 5.5 5 1 1 7 7 5 0 Uncharacterized conserved protein (DUF2203) PAS PF00989.25 gi|219852852|ref|YP_002467284.1| - 5.3e-68 226.1 2.8 3.1e-14 52.9 0.1 7.2 7 0 0 7 7 7 7 PAS fold PAS_9 PF13426.7 gi|219852852|ref|YP_002467284.1| - 3.7e-62 207.1 0.1 1.5e-11 44.5 0.0 7.1 7 0 0 7 7 7 6 PAS domain PAS_4 PF08448.10 gi|219852852|ref|YP_002467284.1| - 1.6e-52 176.4 2.9 4.2e-11 43.1 0.0 7.2 7 0 0 7 7 7 6 PAS fold PAS_8 PF13188.7 gi|219852852|ref|YP_002467284.1| - 5.4e-38 128.4 3.1 1.2e-08 34.8 0.0 7.6 7 0 0 7 7 7 7 PAS domain PAS_3 PF08447.12 gi|219852852|ref|YP_002467284.1| - 4.7e-20 71.7 0.0 0.0046 17.2 0.0 7.1 7 0 0 7 7 7 5 PAS fold PAS_10 PF13596.6 gi|219852852|ref|YP_002467284.1| - 7.1e-08 33.0 0.0 0.0074 16.9 0.0 3.9 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|219852852|ref|YP_002467284.1| - 9.7e-08 32.2 2.5 0.84 9.8 0.1 5.2 6 1 0 6 6 6 3 PAS fold MEKHLA PF08670.11 gi|219852852|ref|YP_002467284.1| - 6.2e-06 26.2 0.0 0.028 14.3 0.0 3.9 6 0 0 6 6 6 2 MEKHLA domain HTH_IclR PF09339.10 gi|219852852|ref|YP_002467284.1| - 4e-05 23.3 0.1 0.0001 22.0 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|219852852|ref|YP_002467284.1| - 0.0002 21.3 0.6 0.001 19.1 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|219852852|ref|YP_002467284.1| - 0.00039 20.3 0.1 0.0014 18.5 0.1 1.9 1 0 0 1 1 1 1 MarR family MLTR_LBD PF17765.1 gi|219852852|ref|YP_002467284.1| - 0.0062 16.7 0.7 1.7 8.8 0.0 4.2 5 0 0 5 5 5 1 MmyB-like transcription regulator ligand binding domain HTH_5 PF01022.20 gi|219852852|ref|YP_002467284.1| - 0.0079 16.0 0.0 0.024 14.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RPA_C PF08784.11 gi|219852852|ref|YP_002467284.1| - 0.019 15.6 0.0 0.05 14.3 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal TBPIP PF07106.13 gi|219852852|ref|YP_002467284.1| - 0.032 14.2 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_23 PF13384.6 gi|219852852|ref|YP_002467284.1| - 0.036 13.9 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|219852852|ref|YP_002467284.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_18 PF12833.7 gi|219852852|ref|YP_002467284.1| - 0.088 13.1 0.0 0.26 11.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|219852852|ref|YP_002467284.1| - 0.11 12.5 0.1 0.42 10.6 0.1 2.1 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|219852852|ref|YP_002467284.1| - 0.11 12.6 0.0 0.32 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF45 PF01863.17 gi|219852854|ref|YP_002467286.1| - 3.6e-55 187.2 0.0 4.1e-55 187.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|219852854|ref|YP_002467286.1| - 0.0064 16.6 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 WLM domain Prefoldin PF02996.17 gi|219852855|ref|YP_002467287.1| - 0.023 14.6 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Prefoldin subunit Peptidase_C78 PF07910.13 gi|219852855|ref|YP_002467287.1| - 0.058 12.9 0.0 0.059 12.8 0.0 1.0 1 0 0 1 1 1 0 Peptidase family C78 PMSR PF01625.21 gi|219852856|ref|YP_002467288.1| - 1.6e-63 213.5 0.1 1.8e-63 213.3 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase EF-hand_6 PF13405.6 gi|219852857|ref|YP_002467289.1| - 0.00093 18.9 2.0 0.02 14.8 0.4 2.8 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.32 gi|219852857|ref|YP_002467289.1| - 0.0023 17.4 4.6 0.026 14.1 1.0 2.7 2 0 0 2 2 2 1 EF hand Dockerin_1 PF00404.18 gi|219852857|ref|YP_002467289.1| - 0.011 15.9 0.2 0.021 15.0 0.2 1.5 1 0 0 1 1 1 0 Dockerin type I domain EF-hand_5 PF13202.6 gi|219852857|ref|YP_002467289.1| - 1.2 8.7 4.8 0.78 9.3 0.5 2.8 2 0 0 2 2 2 0 EF hand EF-hand_8 PF13833.6 gi|219852857|ref|YP_002467289.1| - 8.2 6.4 5.6 1.7 8.5 1.5 1.9 2 0 0 2 2 2 0 EF-hand domain pair PAS_8 PF13188.7 gi|219852858|ref|YP_002467290.1| - 0.062 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 PAS domain zinc_ribbon_2 PF13240.6 gi|219852859|ref|YP_002467291.1| - 3.5e-08 32.9 9.9 0.00012 21.6 1.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|219852859|ref|YP_002467291.1| - 3.9e-08 32.4 11.5 0.00011 21.5 1.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|219852859|ref|YP_002467291.1| - 1.5e-05 24.9 12.2 2.3e-05 24.3 12.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon PHF5 PF03660.14 gi|219852859|ref|YP_002467291.1| - 0.13 12.5 3.7 0.19 12.0 3.7 1.2 1 0 0 1 1 1 0 PHF5-like protein zinc_ribbon_15 PF17032.5 gi|219852859|ref|YP_002467291.1| - 0.28 11.9 12.3 0.6 10.9 2.8 2.2 2 0 0 2 2 2 0 zinc-ribbon family PolC_DP2 PF03833.13 gi|219852859|ref|YP_002467291.1| - 0.35 8.7 2.1 0.43 8.4 2.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn_ribbon_17 PF17120.5 gi|219852859|ref|YP_002467291.1| - 0.54 9.9 9.1 2 8.1 1.7 2.3 2 0 0 2 2 2 0 Zinc-ribbon, C4HC2 type zinc-ribbons_6 PF07191.12 gi|219852859|ref|YP_002467291.1| - 1.9 8.5 8.4 4.2 7.4 8.4 1.6 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|219852859|ref|YP_002467291.1| - 3.9 7.5 9.0 1.4 9.0 1.5 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Fer4_15 PF13459.6 gi|219852860|ref|YP_002467292.1| - 4.9e-17 62.4 1.9 5.6e-17 62.2 1.9 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|219852860|ref|YP_002467292.1| - 1.2e-12 48.2 3.1 1.8e-12 47.6 3.1 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|219852860|ref|YP_002467292.1| - 4.4e-05 23.1 6.6 0.00088 19.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219852860|ref|YP_002467292.1| - 0.0036 17.3 1.3 0.0036 17.3 1.3 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219852860|ref|YP_002467292.1| - 0.0041 17.7 2.4 0.081 13.5 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852860|ref|YP_002467292.1| - 0.0045 17.1 5.4 0.019 15.1 5.5 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219852860|ref|YP_002467292.1| - 0.012 15.8 2.1 0.012 15.8 2.1 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219852860|ref|YP_002467292.1| - 0.033 14.3 2.1 0.033 14.3 2.1 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219852860|ref|YP_002467292.1| - 0.053 13.7 3.7 0.15 12.3 1.6 2.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852860|ref|YP_002467292.1| - 0.31 12.0 5.1 5.1 8.1 4.8 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Lactamase_B_2 PF12706.7 gi|219852861|ref|YP_002467293.1| - 2.5e-08 33.7 0.0 4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219852861|ref|YP_002467293.1| - 0.031 14.3 0.0 0.079 13.0 0.0 1.8 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Cas6b_C PF17262.2 gi|219852863|ref|YP_002467295.1| - 3.3e-34 117.4 0.0 5.5e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 Cas6b C-terminal domain Cas6b_N PF17955.1 gi|219852863|ref|YP_002467295.1| - 8.9e-12 45.0 0.0 1.3e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Cas6b N-terminal domain MarR PF01047.22 gi|219852866|ref|YP_002467298.1| - 1.3e-11 44.3 0.0 2.9e-11 43.1 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|219852866|ref|YP_002467298.1| - 7.4e-06 25.8 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|219852866|ref|YP_002467298.1| - 1.8e-05 24.5 0.1 0.001 18.9 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|219852866|ref|YP_002467298.1| - 0.0004 20.8 0.0 0.00063 20.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|219852866|ref|YP_002467298.1| - 0.00056 19.4 0.1 0.0019 17.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|219852866|ref|YP_002467298.1| - 0.00097 19.0 0.0 0.0015 18.4 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit PadR PF03551.14 gi|219852866|ref|YP_002467298.1| - 0.075 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|219852866|ref|YP_002467298.1| - 0.089 13.0 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Fumerase_C PF05683.12 gi|219852866|ref|YP_002467298.1| - 0.15 11.4 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Fumarase C-terminus DUF1304 PF06993.12 gi|219852867|ref|YP_002467299.1| - 1.1 9.3 7.3 0.15 12.1 1.9 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1304) ORC3_N PF07034.11 gi|219852868|ref|YP_002467300.1| - 0.4 9.7 0.9 0.46 9.5 0.9 1.3 1 1 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus Dockerin_1 PF00404.18 gi|219852869|ref|YP_002467301.1| - 0.035 14.3 0.4 0.086 13.0 0.6 1.6 2 0 0 2 2 2 0 Dockerin type I domain DUF1453 PF07301.11 gi|219852870|ref|YP_002467302.1| - 0.21 11.6 7.5 0.72 9.9 7.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1453) DUF2304 PF10066.9 gi|219852870|ref|YP_002467302.1| - 4.6 7.5 10.7 2.7 8.3 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) FixP_N PF14715.6 gi|219852870|ref|YP_002467302.1| - 7.4 6.4 8.5 1.2 8.9 0.4 3.0 3 0 0 3 3 3 0 N-terminal domain of cytochrome oxidase-cbb3, FixP RNase_T PF00929.24 gi|219852875|ref|YP_002467307.1| - 1.8e-17 64.4 0.0 2.2e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 gi|219852875|ref|YP_002467307.1| - 0.0083 16.1 0.0 0.037 14.0 0.0 1.9 2 0 0 2 2 2 1 3' exoribonuclease, RNase T-like DDE_Tnp_1 PF01609.21 gi|219852876|ref|YP_002467308.1| - 2.5e-17 63.3 2.0 4.7e-17 62.4 2.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|219852876|ref|YP_002467308.1| - 0.00044 20.6 0.3 0.0011 19.3 0.3 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|219852876|ref|YP_002467308.1| - 0.0022 18.0 0.1 0.0048 16.9 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF3089 PF11288.8 gi|219852876|ref|YP_002467308.1| - 0.02 14.5 0.5 3 7.3 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3089) SBP_bac_11 PF13531.6 gi|219852878|ref|YP_002467310.1| - 4.3e-43 147.7 7.3 4.9e-32 111.5 1.5 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|219852878|ref|YP_002467310.1| - 6.5e-24 85.1 14.3 8.9e-23 81.3 5.7 2.3 2 0 0 2 2 2 2 PBP superfamily domain SBP_bac_1 PF01547.25 gi|219852878|ref|YP_002467310.1| - 6.7e-12 46.0 2.4 6.7e-12 46.0 2.4 3.2 3 1 1 4 4 4 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|219852878|ref|YP_002467310.1| - 0.023 14.1 0.0 0.64 9.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|219852878|ref|YP_002467310.1| - 0.053 12.9 0.0 2.2 7.6 0.0 2.3 2 0 0 2 2 2 0 LysR substrate binding domain DUF3963 PF13124.6 gi|219852878|ref|YP_002467310.1| - 0.065 13.2 1.5 0.13 12.2 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3963) BPD_transp_1 PF00528.22 gi|219852879|ref|YP_002467311.1| - 8.2e-16 58.3 19.7 8.2e-16 58.3 19.7 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MR_MLE_N PF02746.16 gi|219852879|ref|YP_002467311.1| - 0.043 14.0 0.1 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FtsX PF02687.21 gi|219852879|ref|YP_002467311.1| - 0.32 11.5 26.9 0.055 13.9 7.8 2.6 2 1 0 2 2 2 0 FtsX-like permease family ABC_tran PF00005.27 gi|219852880|ref|YP_002467312.1| - 7.4e-31 107.5 0.0 1.6e-30 106.4 0.0 1.6 2 0 0 2 2 2 1 ABC transporter TOBE PF03459.17 gi|219852880|ref|YP_002467312.1| - 1.7e-14 53.9 0.4 9.5e-14 51.5 0.2 2.4 3 0 0 3 3 3 1 TOBE domain TOBE_2 PF08402.10 gi|219852880|ref|YP_002467312.1| - 1.7e-09 37.7 0.2 5.9e-09 36.0 0.1 2.0 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 gi|219852880|ref|YP_002467312.1| - 1.5e-08 34.9 3.1 0.0004 20.3 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852880|ref|YP_002467312.1| - 3.7e-05 23.3 0.0 0.052 13.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|219852880|ref|YP_002467312.1| - 8.7e-05 23.0 0.2 0.00035 21.0 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|219852880|ref|YP_002467312.1| - 0.00068 19.3 0.3 0.0015 18.3 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|219852880|ref|YP_002467312.1| - 0.0009 19.2 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|219852880|ref|YP_002467312.1| - 0.0049 16.6 1.6 0.16 11.7 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain TOBE_3 PF12857.7 gi|219852880|ref|YP_002467312.1| - 0.013 15.3 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 TOBE-like domain Adeno_IVa2 PF02456.15 gi|219852880|ref|YP_002467312.1| - 0.016 14.0 0.1 0.034 12.9 0.1 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_23 PF13476.6 gi|219852880|ref|YP_002467312.1| - 0.017 15.6 0.1 0.028 14.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|219852880|ref|YP_002467312.1| - 0.021 14.8 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|219852880|ref|YP_002467312.1| - 0.023 15.0 0.3 0.065 13.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|219852880|ref|YP_002467312.1| - 0.052 14.1 0.4 0.13 12.8 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|219852880|ref|YP_002467312.1| - 0.089 13.0 0.2 0.17 12.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain MCR_beta PF02241.18 gi|219852881|ref|YP_002467313.1| - 1.7e-131 437.3 3.1 1.7e-131 437.3 3.1 1.5 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|219852881|ref|YP_002467313.1| - 1.2e-84 282.5 2.4 1.9e-84 281.8 2.4 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|219852882|ref|YP_002467314.1| - 4.3e-52 175.8 0.0 5e-52 175.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.12 gi|219852883|ref|YP_002467315.1| - 1.5e-07 30.8 1.3 1.7e-06 27.3 1.3 2.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.16 gi|219852884|ref|YP_002467316.1| - 1.3e-135 450.4 0.1 1.4e-135 450.2 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|219852885|ref|YP_002467317.1| - 3.7e-150 498.7 0.1 5.3e-150 498.2 0.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|219852885|ref|YP_002467317.1| - 7.5e-69 230.1 4.0 1.4e-68 229.2 4.0 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain U1snRNP70_N PF12220.8 gi|219852885|ref|YP_002467317.1| - 0.15 12.7 0.2 0.29 11.8 0.2 1.4 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal MtrE PF04206.12 gi|219852886|ref|YP_002467318.1| - 7.9e-132 438.6 10.9 9e-132 438.4 10.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MtrD PF04207.12 gi|219852887|ref|YP_002467319.1| - 8e-95 316.7 26.8 1e-94 316.3 26.8 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D Dexa_ind PF15198.6 gi|219852887|ref|YP_002467319.1| - 0.14 12.2 1.6 2.2 8.4 0.1 2.4 2 0 0 2 2 2 0 Dexamethasone-induced MtrC PF04211.13 gi|219852888|ref|YP_002467320.1| - 4.2e-72 242.4 28.8 5.9e-72 241.9 28.8 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.12 gi|219852889|ref|YP_002467321.1| - 8.6e-32 109.4 0.1 9.7e-32 109.3 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.14 gi|219852890|ref|YP_002467322.1| - 1.8e-84 281.6 1.2 2.4e-84 281.2 1.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|219852890|ref|YP_002467322.1| - 0.11 11.9 4.7 1.2 8.6 4.7 2.5 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.10 gi|219852891|ref|YP_002467323.1| - 1.1e-24 85.5 1.5 1.2e-24 85.4 1.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|219852892|ref|YP_002467324.1| - 1.1e-84 282.3 1.0 1.6e-84 281.8 1.0 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.13 gi|219852892|ref|YP_002467324.1| - 3.5e-23 81.2 1.2 7.4e-23 80.2 0.3 1.9 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit G Osmo_CC PF08946.10 gi|219852892|ref|YP_002467324.1| - 0.044 14.0 0.1 0.12 12.6 0.1 1.7 1 0 0 1 1 1 0 Osmosensory transporter coiled coil KxDL PF10241.9 gi|219852892|ref|YP_002467324.1| - 0.12 12.6 0.1 21 5.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein DUF2536 PF10750.9 gi|219852892|ref|YP_002467324.1| - 0.19 11.7 0.7 0.89 9.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) MtrH PF02007.18 gi|219852893|ref|YP_002467325.1| - 4.9e-103 344.4 0.1 1.9e-102 342.4 0.1 1.7 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit CPSase_sm_chain PF00988.22 gi|219852894|ref|YP_002467326.1| - 8.4e-41 138.8 0.1 1.3e-40 138.2 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|219852894|ref|YP_002467326.1| - 1.5e-37 129.3 0.0 2.1e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|219852894|ref|YP_002467326.1| - 1.8e-05 24.6 0.0 0.0032 17.3 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|219852895|ref|YP_002467327.1| - 2.8e-109 363.5 0.4 4e-70 235.6 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|219852895|ref|YP_002467327.1| - 8.2e-34 116.6 0.0 3e-33 114.7 0.0 2.1 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|219852895|ref|YP_002467327.1| - 3.1e-19 69.0 1.5 7.8e-17 61.2 0.0 4.3 4 1 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.22 gi|219852895|ref|YP_002467327.1| - 6.6e-18 64.9 0.1 7e-08 32.2 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|219852895|ref|YP_002467327.1| - 1.2e-15 57.6 0.0 1.3e-06 28.1 0.0 2.7 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|219852895|ref|YP_002467327.1| - 2.1e-15 56.6 0.0 2.6e-07 30.5 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|219852895|ref|YP_002467327.1| - 5.5e-12 46.0 0.2 9.5e-06 25.7 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|219852895|ref|YP_002467327.1| - 8.4e-08 32.2 0.1 0.0074 16.1 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|219852895|ref|YP_002467327.1| - 1.1e-07 31.6 0.0 0.0084 15.7 0.0 2.9 2 1 0 2 2 2 2 RimK-like ATP-grasp domain Glyco_trans_4_2 PF13477.6 gi|219852895|ref|YP_002467327.1| - 0.0001 22.3 0.0 0.47 10.5 0.0 3.0 2 0 0 2 2 2 2 Glycosyl transferase 4-like ATP-grasp_5 PF13549.6 gi|219852895|ref|YP_002467327.1| - 0.00021 20.8 0.9 0.09 12.2 0.0 4.1 5 0 0 5 5 5 1 ATP-grasp domain TIR_2 PF13676.6 gi|219852895|ref|YP_002467327.1| - 0.013 16.1 0.0 0.075 13.6 0.0 2.4 2 0 0 2 2 2 0 TIR domain STAS PF01740.21 gi|219852895|ref|YP_002467327.1| - 0.019 14.6 0.0 2.5 7.8 0.0 2.9 2 0 0 2 2 2 0 STAS domain Epimerase PF01370.21 gi|219852895|ref|YP_002467327.1| - 0.037 13.5 0.0 0.34 10.4 0.0 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Sigma70_r4_2 PF08281.12 gi|219852895|ref|YP_002467327.1| - 0.039 13.6 0.0 1.1 9.0 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 Amidinotransf PF02274.17 gi|219852895|ref|YP_002467327.1| - 0.055 12.5 0.0 4.6 6.2 0.0 2.4 2 0 0 2 2 2 0 Amidinotransferase Arginosuc_synth PF00764.19 gi|219852896|ref|YP_002467328.1| - 1.1e-159 531.9 0.0 1.3e-159 531.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|219852896|ref|YP_002467328.1| - 0.0073 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|219852896|ref|YP_002467328.1| - 0.011 14.8 0.0 0.027 13.6 0.0 1.6 2 0 0 2 2 2 0 NAD synthase UPF0020 PF01170.18 gi|219852897|ref|YP_002467329.1| - 3.4e-24 85.6 0.0 4e-23 82.1 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|219852897|ref|YP_002467329.1| - 1.2e-06 29.1 0.0 4.2e-06 27.3 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219852897|ref|YP_002467329.1| - 5.5e-06 27.0 0.0 2.4e-05 24.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|219852897|ref|YP_002467329.1| - 6.1e-06 26.1 0.0 0.00026 20.8 0.0 2.7 3 0 0 3 3 3 1 DNA methylase AviRa PF11599.8 gi|219852897|ref|YP_002467329.1| - 6.6e-05 22.5 0.0 0.056 12.9 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_31 PF13847.6 gi|219852897|ref|YP_002467329.1| - 0.00085 19.2 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|219852897|ref|YP_002467329.1| - 0.016 15.3 0.0 0.027 14.6 0.0 1.4 1 0 0 1 1 1 0 THUMP domain N6_Mtase PF02384.16 gi|219852897|ref|YP_002467329.1| - 0.092 12.0 0.0 0.29 10.3 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase E1-E2_ATPase PF00122.20 gi|219852898|ref|YP_002467330.1| - 1.5e-45 155.0 0.0 1.5e-45 155.0 0.0 3.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|219852898|ref|YP_002467330.1| - 1.8e-35 123.2 0.3 2.8e-35 122.5 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Peptidase_M24 PF00557.24 gi|219852898|ref|YP_002467330.1| - 0.014 15.1 0.2 0.05 13.3 0.1 1.8 1 1 1 2 2 2 0 Metallopeptidase family M24 Hydrolase_3 PF08282.12 gi|219852898|ref|YP_002467330.1| - 0.04 13.7 0.4 0.089 12.5 0.2 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HTH_Crp_2 PF13545.6 gi|219852899|ref|YP_002467331.1| - 6.9e-05 22.7 0.2 0.00012 22.0 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FeoC PF09012.10 gi|219852899|ref|YP_002467331.1| - 0.0011 19.0 2.1 0.0018 18.3 2.1 1.4 1 1 0 1 1 1 1 FeoC like transcriptional regulator HTH_20 PF12840.7 gi|219852899|ref|YP_002467331.1| - 0.003 17.6 0.1 0.0043 17.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|219852899|ref|YP_002467331.1| - 0.0075 16.1 0.1 0.46 10.4 0.0 2.0 2 0 0 2 2 2 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|219852899|ref|YP_002467331.1| - 0.0091 15.9 0.2 0.04 13.8 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|219852899|ref|YP_002467331.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|219852899|ref|YP_002467331.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_15 PF12324.8 gi|219852899|ref|YP_002467331.1| - 0.034 14.1 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Rrf2 PF02082.20 gi|219852899|ref|YP_002467331.1| - 0.04 14.3 0.1 0.057 13.8 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator FaeA PF04703.12 gi|219852899|ref|YP_002467331.1| - 0.041 14.2 0.1 0.057 13.8 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein EAP30 PF04157.16 gi|219852899|ref|YP_002467331.1| - 0.086 12.1 0.1 0.099 11.9 0.1 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family LexA_DNA_bind PF01726.16 gi|219852899|ref|YP_002467331.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain DUF4423 PF14394.6 gi|219852899|ref|YP_002467331.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.6 gi|219852899|ref|YP_002467331.1| - 0.11 12.6 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|219852899|ref|YP_002467331.1| - 0.11 12.7 0.1 0.5 10.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.22 gi|219852899|ref|YP_002467331.1| - 0.13 12.2 0.0 0.25 11.3 0.1 1.5 2 0 0 2 2 2 0 MarR family MAGE PF01454.19 gi|219852899|ref|YP_002467331.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 MAGE family TrmB PF01978.19 gi|219852899|ref|YP_002467331.1| - 0.15 11.9 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoB_N PF02421.18 gi|219852901|ref|YP_002467333.1| - 2.5e-66 222.0 0.1 4e-66 221.4 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|219852901|ref|YP_002467333.1| - 1.6e-46 157.2 16.1 4.5e-31 107.4 1.9 3.1 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 gi|219852901|ref|YP_002467333.1| - 5.9e-21 73.9 2.0 5.9e-21 73.9 2.0 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|219852901|ref|YP_002467333.1| - 5.3e-20 71.6 0.0 1.1e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|219852901|ref|YP_002467333.1| - 1e-13 51.6 0.0 1.8e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|219852901|ref|YP_002467333.1| - 0.0014 18.0 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.10 gi|219852901|ref|YP_002467333.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|219852901|ref|YP_002467333.1| - 0.0018 18.3 0.0 2.3 8.2 0.0 2.3 2 0 0 2 2 2 2 Dynamin family ATP_bind_1 PF03029.17 gi|219852901|ref|YP_002467333.1| - 0.0025 17.6 0.0 0.036 13.8 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|219852901|ref|YP_002467333.1| - 0.0033 17.0 0.1 0.056 13.0 0.0 2.2 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|219852901|ref|YP_002467333.1| - 0.024 13.6 0.1 2.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 gi|219852901|ref|YP_002467333.1| - 0.025 14.0 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|219852901|ref|YP_002467333.1| - 0.12 12.3 0.2 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 RsgA GTPase FeoA PF04023.14 gi|219852902|ref|YP_002467334.1| - 6.9e-21 74.3 0.1 7.7e-21 74.1 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|219852903|ref|YP_002467335.1| - 5.2e-13 49.1 0.0 6.3e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.19 gi|219852904|ref|YP_002467336.1| - 2.2e-20 72.6 0.1 4.2e-20 71.7 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|219852904|ref|YP_002467336.1| - 3.6e-17 62.2 0.2 4.1e-16 58.8 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.22 gi|219852904|ref|YP_002467336.1| - 0.00021 21.2 0.0 0.00039 20.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|219852904|ref|YP_002467336.1| - 0.0043 17.4 0.0 0.0075 16.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|219852904|ref|YP_002467336.1| - 0.0049 16.7 0.0 0.0089 15.9 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|219852904|ref|YP_002467336.1| - 0.0077 16.3 0.3 0.024 14.8 0.1 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|219852904|ref|YP_002467336.1| - 0.0078 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|219852904|ref|YP_002467336.1| - 0.0092 15.8 0.2 0.045 13.6 0.1 2.1 1 1 1 2 2 2 1 TFIIE alpha subunit DUF505 PF04458.12 gi|219852904|ref|YP_002467336.1| - 0.015 13.7 0.1 0.016 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_Crp_2 PF13545.6 gi|219852904|ref|YP_002467336.1| - 0.016 15.2 0.0 0.04 13.9 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_37 PF13744.6 gi|219852904|ref|YP_002467336.1| - 0.029 14.3 0.2 3.5 7.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain FeoC PF09012.10 gi|219852904|ref|YP_002467336.1| - 0.034 14.2 0.0 0.12 12.5 0.0 1.9 1 1 1 2 2 2 0 FeoC like transcriptional regulator Terminase_5 PF06056.12 gi|219852904|ref|YP_002467336.1| - 0.035 14.0 0.0 0.15 11.9 0.0 1.9 1 1 1 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_6 PF01418.17 gi|219852904|ref|YP_002467336.1| - 0.043 13.8 0.0 2.5 8.1 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.6 gi|219852904|ref|YP_002467336.1| - 0.072 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|219852904|ref|YP_002467336.1| - 0.15 11.7 0.0 3.2 7.5 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LexA_DNA_bind PF01726.16 gi|219852904|ref|YP_002467336.1| - 0.15 11.8 0.1 0.34 10.7 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain Cation_efflux PF01545.21 gi|219852905|ref|YP_002467337.1| - 6.1e-40 137.1 15.1 7.9e-40 136.7 15.1 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|219852905|ref|YP_002467337.1| - 1.5e-14 53.9 2.1 2.8e-14 53.0 2.1 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF5403 PF17395.2 gi|219852905|ref|YP_002467337.1| - 0.077 13.3 0.4 0.077 13.3 0.4 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5403) ABC_tran PF00005.27 gi|219852906|ref|YP_002467338.1| - 7.9e-32 110.6 0.0 1.3e-31 109.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219852906|ref|YP_002467338.1| - 3.9e-18 66.3 0.0 4.1e-11 43.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219852906|ref|YP_002467338.1| - 1.6e-06 27.7 0.0 0.0041 16.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|219852906|ref|YP_002467338.1| - 4.7e-06 26.6 0.0 0.012 15.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|219852906|ref|YP_002467338.1| - 0.00079 19.1 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219852906|ref|YP_002467338.1| - 0.0063 16.9 0.0 0.013 15.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|219852906|ref|YP_002467338.1| - 0.012 16.2 0.0 0.018 15.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|219852906|ref|YP_002467338.1| - 0.016 14.9 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|219852906|ref|YP_002467338.1| - 0.019 15.2 0.0 0.084 13.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|219852906|ref|YP_002467338.1| - 0.021 13.5 0.0 2.8 6.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|219852906|ref|YP_002467338.1| - 0.027 14.7 0.0 0.7 10.1 0.0 2.3 1 1 1 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|219852906|ref|YP_002467338.1| - 0.031 14.2 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|219852906|ref|YP_002467338.1| - 0.039 14.2 0.1 0.9 9.8 0.1 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|219852906|ref|YP_002467338.1| - 0.059 13.1 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|219852906|ref|YP_002467338.1| - 0.061 12.9 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|219852906|ref|YP_002467338.1| - 0.13 12.3 0.0 0.82 9.8 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase MukB PF04310.12 gi|219852906|ref|YP_002467338.1| - 0.18 11.6 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal CbiQ PF02361.16 gi|219852907|ref|YP_002467339.1| - 6e-39 133.9 3.7 8.5e-39 133.4 3.7 1.2 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.15 gi|219852908|ref|YP_002467340.1| - 4e-16 58.8 0.1 4.9e-16 58.5 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.16 gi|219852909|ref|YP_002467341.1| - 2e-51 174.8 19.0 2.3e-51 174.6 19.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Transgly_assoc PF04226.13 gi|219852909|ref|YP_002467341.1| - 0.36 11.1 11.1 1.4 9.2 6.4 3.5 2 1 0 2 2 2 0 Transglycosylase associated protein Arginase PF00491.21 gi|219852911|ref|YP_002467343.1| - 7.7e-63 212.6 0.0 8.7e-63 212.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family Uma2 PF05685.12 gi|219852911|ref|YP_002467343.1| - 0.0021 17.6 0.0 0.0047 16.5 0.0 1.5 2 0 0 2 2 2 1 Putative restriction endonuclease eIF-5a PF01287.20 gi|219852912|ref|YP_002467344.1| - 1.6e-05 24.9 0.9 3.2e-05 23.9 0.9 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|219852912|ref|YP_002467344.1| - 0.0063 16.5 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Macscav_rec PF03523.13 gi|219852912|ref|YP_002467344.1| - 0.073 13.0 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 Macrophage scavenger receptor Inositol_P PF00459.25 gi|219852913|ref|YP_002467345.1| - 4.6e-35 121.5 0.0 5.9e-35 121.1 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|219852913|ref|YP_002467345.1| - 0.00011 21.8 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain NAD_kinase PF01513.21 gi|219852914|ref|YP_002467346.1| - 1.4e-49 168.9 0.1 1.6e-49 168.6 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|219852914|ref|YP_002467346.1| - 0.02 14.5 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain LEA_2 PF03168.13 gi|219852914|ref|YP_002467346.1| - 0.15 12.6 0.0 1.2 9.8 0.0 2.1 2 0 0 2 2 2 0 Late embryogenesis abundant protein Radical_SAM PF04055.21 gi|219852915|ref|YP_002467347.1| - 9.9e-09 35.8 0.0 1.6e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DprA_WH PF17782.1 gi|219852915|ref|YP_002467347.1| - 2.6e-05 24.2 1.1 0.00041 20.4 0.0 2.8 3 0 0 3 3 3 1 DprA winged helix domain Fer4_14 PF13394.6 gi|219852915|ref|YP_002467347.1| - 4.7e-05 23.5 0.0 8.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|219852915|ref|YP_002467347.1| - 0.024 14.9 0.0 0.04 14.2 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain Rrf2 PF02082.20 gi|219852915|ref|YP_002467347.1| - 0.075 13.4 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|219852915|ref|YP_002467347.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDE_Tnp_1 PF01609.21 gi|219852917|ref|YP_002467349.1| - 2.6e-19 69.7 1.4 4.4e-19 69.0 1.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|219852917|ref|YP_002467349.1| - 0.00012 22.4 0.3 0.00025 21.4 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|219852917|ref|YP_002467349.1| - 0.012 15.6 0.1 0.032 14.2 0.1 1.7 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_4 PF13359.6 gi|219852917|ref|YP_002467349.1| - 0.013 15.1 0.4 0.02 14.5 0.4 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF3089 PF11288.8 gi|219852917|ref|YP_002467349.1| - 0.11 12.0 0.2 11 5.5 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3089) ABC_tran PF00005.27 gi|219852918|ref|YP_002467350.1| - 3.9e-53 179.6 0.0 7.4e-27 94.5 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|219852918|ref|YP_002467350.1| - 1.9e-08 34.5 0.9 0.0034 17.2 0.1 4.1 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|219852918|ref|YP_002467350.1| - 2.8e-06 27.0 0.3 0.1 12.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|219852918|ref|YP_002467350.1| - 1.3e-05 25.2 0.4 0.19 11.6 0.0 2.8 3 0 0 3 3 3 2 RsgA GTPase SMC_N PF02463.19 gi|219852918|ref|YP_002467350.1| - 2.4e-05 23.9 6.4 0.011 15.2 0.1 3.7 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|219852918|ref|YP_002467350.1| - 0.00012 22.3 0.0 2 8.7 0.0 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit PRK PF00485.18 gi|219852918|ref|YP_002467350.1| - 0.00038 20.2 0.5 0.48 10.1 0.1 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|219852918|ref|YP_002467350.1| - 0.0005 20.1 0.4 1.7 8.8 0.0 3.3 4 0 0 4 4 4 2 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|219852918|ref|YP_002467350.1| - 0.00059 20.3 0.3 1.2 9.5 0.1 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|219852918|ref|YP_002467350.1| - 0.0023 18.2 3.3 1.2 9.4 0.0 3.4 4 0 0 4 4 3 1 AAA domain ATP-synt_ab PF00006.25 gi|219852918|ref|YP_002467350.1| - 0.0026 17.5 0.3 1.6 8.3 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 gi|219852918|ref|YP_002467350.1| - 0.0032 18.0 0.4 1.6 9.3 0.1 3.3 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|219852918|ref|YP_002467350.1| - 0.0048 16.6 1.9 3.7 7.2 0.0 3.8 4 1 0 4 4 4 1 IstB-like ATP binding protein AAA_23 PF13476.6 gi|219852918|ref|YP_002467350.1| - 0.0065 17.0 0.9 0.13 12.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|219852918|ref|YP_002467350.1| - 0.008 15.7 0.2 0.9 9.0 0.1 2.7 2 1 0 2 2 2 1 PhoH-like protein NB-ARC PF00931.22 gi|219852918|ref|YP_002467350.1| - 0.012 14.8 1.9 3.1 6.9 0.1 2.6 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|219852918|ref|YP_002467350.1| - 0.013 15.2 3.0 1.3 8.7 0.1 3.1 4 0 0 4 4 3 0 AAA domain DUF87 PF01935.17 gi|219852918|ref|YP_002467350.1| - 0.015 15.4 3.4 5.8 6.9 0.5 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain MobB PF03205.14 gi|219852918|ref|YP_002467350.1| - 0.024 14.5 0.2 1.4 8.8 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|219852918|ref|YP_002467350.1| - 0.025 13.2 0.0 0.3 9.7 0.1 2.4 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|219852918|ref|YP_002467350.1| - 0.044 13.9 1.6 3.4 7.8 0.1 3.3 4 0 0 4 4 4 0 AAA domain PduV-EutP PF10662.9 gi|219852918|ref|YP_002467350.1| - 0.078 12.7 0.2 3.7 7.3 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|219852918|ref|YP_002467350.1| - 0.087 12.5 0.3 3.1 7.5 0.1 2.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|219852918|ref|YP_002467350.1| - 0.1 13.0 0.3 27 5.2 0.1 2.6 2 0 0 2 2 2 0 RNA helicase Zeta_toxin PF06414.12 gi|219852918|ref|YP_002467350.1| - 0.14 11.4 1.1 20 4.4 0.1 3.1 3 0 0 3 3 3 0 Zeta toxin NACHT PF05729.12 gi|219852918|ref|YP_002467350.1| - 0.18 11.7 2.9 12 5.8 0.4 3.1 3 0 0 3 3 3 0 NACHT domain ATPase PF06745.13 gi|219852918|ref|YP_002467350.1| - 0.2 11.0 2.8 27 4.0 0.3 3.6 4 0 0 4 4 4 0 KaiC TsaE PF02367.17 gi|219852918|ref|YP_002467350.1| - 0.22 11.5 0.2 3.2 7.8 0.1 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE zf-C4_Topoisom PF01396.19 gi|219852918|ref|YP_002467350.1| - 0.69 9.8 2.1 0.48 10.3 0.3 1.7 2 0 0 2 2 1 0 Topoisomerase DNA binding C4 zinc finger DUF134 PF02001.16 gi|219852919|ref|YP_002467351.1| - 1.5e-21 76.8 0.0 1.9e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|219852919|ref|YP_002467351.1| - 3.1e-08 33.2 0.1 5.5e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|219852919|ref|YP_002467351.1| - 4e-07 30.1 0.1 6e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|219852919|ref|YP_002467351.1| - 3.7e-06 26.4 0.3 6.2e-06 25.6 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|219852919|ref|YP_002467351.1| - 0.00012 21.7 0.2 0.00033 20.4 0.1 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_1 PF00126.27 gi|219852919|ref|YP_002467351.1| - 0.00089 19.2 0.1 0.0012 18.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|219852919|ref|YP_002467351.1| - 0.0016 18.4 0.1 0.0029 17.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|219852919|ref|YP_002467351.1| - 0.012 15.3 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_3 PF01381.22 gi|219852919|ref|YP_002467351.1| - 0.013 15.5 1.0 0.037 14.1 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_29 PF13551.6 gi|219852919|ref|YP_002467351.1| - 0.015 15.3 1.7 0.12 12.4 0.2 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_17 PF12728.7 gi|219852919|ref|YP_002467351.1| - 0.036 14.2 0.0 0.076 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|219852919|ref|YP_002467351.1| - 0.039 13.8 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_31 PF13560.6 gi|219852919|ref|YP_002467351.1| - 0.085 13.2 3.5 0.19 12.1 3.4 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|219852919|ref|YP_002467351.1| - 0.092 12.9 2.1 0.47 10.6 0.3 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|219852919|ref|YP_002467351.1| - 0.15 12.0 0.1 0.36 10.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF169 PF02596.15 gi|219852921|ref|YP_002467353.1| - 9.6e-63 211.8 0.0 1.1e-62 211.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Vac_Fusion PF02346.16 gi|219852921|ref|YP_002467353.1| - 0.17 11.5 0.0 13 5.5 0.0 3.0 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 DnaJ_C PF01556.18 gi|219852922|ref|YP_002467354.1| - 3.5e-34 118.0 0.0 7.3e-34 117.0 0.0 1.5 1 1 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|219852922|ref|YP_002467354.1| - 4.5e-27 94.0 2.4 7.5e-27 93.2 2.4 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|219852922|ref|YP_002467354.1| - 1.4e-10 41.4 21.6 1.4e-10 41.3 20.4 1.7 2 0 0 2 2 2 1 DnaJ central domain DZR PF12773.7 gi|219852922|ref|YP_002467354.1| - 0.4 10.8 11.5 1.7 8.7 11.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|219852922|ref|YP_002467354.1| - 3.1 7.4 6.5 5 6.7 0.9 2.3 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 HypA PF01155.19 gi|219852922|ref|YP_002467354.1| - 3.4 7.7 11.5 7.6 6.6 2.3 2.4 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|219852922|ref|YP_002467354.1| - 5.1 7.1 18.0 0.45 10.5 2.9 3.4 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein OrfB_Zn_ribbon PF07282.11 gi|219852922|ref|YP_002467354.1| - 6.2 6.8 11.6 0.23 11.4 1.5 2.7 2 1 0 2 2 2 0 Putative transposase DNA-binding domain HSP70 PF00012.20 gi|219852923|ref|YP_002467355.1| - 1.4e-235 783.1 19.7 7.3e-210 698.2 13.4 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|219852923|ref|YP_002467355.1| - 1.1e-17 63.8 6.3 2.3e-17 62.8 6.3 1.5 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|219852923|ref|YP_002467355.1| - 0.0027 17.4 0.0 0.014 15.2 0.0 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 gi|219852923|ref|YP_002467355.1| - 7.3 7.1 12.2 7.3 7.1 0.2 3.9 3 3 0 3 3 3 0 Cell division protein FtsA GrpE PF01025.19 gi|219852924|ref|YP_002467356.1| - 8.6e-42 142.6 0.8 1e-41 142.4 0.8 1.1 1 0 0 1 1 1 1 GrpE MMR_HSR1_C PF08438.10 gi|219852924|ref|YP_002467356.1| - 0.014 15.9 0.1 0.024 15.2 0.1 1.3 1 0 0 1 1 1 0 GTPase of unknown function C-terminal FTA4 PF13093.6 gi|219852924|ref|YP_002467356.1| - 0.025 14.5 0.5 0.034 14.0 0.5 1.3 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Enkurin PF13864.6 gi|219852924|ref|YP_002467356.1| - 0.028 14.8 0.6 0.045 14.2 0.3 1.6 1 1 0 1 1 1 0 Calmodulin-binding DUF4947 PF16305.5 gi|219852924|ref|YP_002467356.1| - 0.053 13.5 1.5 0.068 13.2 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4947) Metal_hydrol PF10118.9 gi|219852924|ref|YP_002467356.1| - 0.088 12.5 0.2 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 Predicted metal-dependent hydrolase Hemagglutinin PF00509.18 gi|219852924|ref|YP_002467356.1| - 0.094 11.1 0.9 0.12 10.7 0.9 1.0 1 0 0 1 1 1 0 Haemagglutinin AICARFT_IMPCHas PF01808.18 gi|219852925|ref|YP_002467357.1| - 8.3e-106 353.7 0.0 9.9e-106 353.5 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|219852925|ref|YP_002467357.1| - 2.4e-20 72.5 0.0 4.3e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 MGS-like domain BING4CT PF08149.11 gi|219852925|ref|YP_002467357.1| - 0.071 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 BING4CT (NUC141) domain MEDS PF14417.6 gi|219852925|ref|YP_002467357.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF4013 PF13197.6 gi|219852927|ref|YP_002467359.1| - 4.3e-33 114.5 32.8 4.3e-33 114.5 32.8 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF3767 PF12597.8 gi|219852927|ref|YP_002467359.1| - 2.6 7.9 6.0 0.95 9.3 0.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3767) MotA_ExbB PF01618.16 gi|219852927|ref|YP_002467359.1| - 4.4 7.1 7.7 18 5.1 7.7 2.0 1 1 0 1 1 1 0 MotA/TolQ/ExbB proton channel family DUF962 PF06127.11 gi|219852927|ref|YP_002467359.1| - 7.1 6.8 11.3 3.5 7.8 6.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF962) DUF4013 PF13197.6 gi|219852928|ref|YP_002467360.1| - 8.5e-32 110.3 31.9 8.5e-32 110.3 31.9 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Flavodoxin_5 PF12724.7 gi|219852929|ref|YP_002467361.1| - 2.6e-10 40.7 0.0 4.2e-10 40.0 0.0 1.4 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|219852929|ref|YP_002467361.1| - 2.6e-06 27.2 0.0 4.6e-06 26.4 0.0 1.4 2 0 0 2 2 2 1 Flavodoxin domain Glyco_tranf_2_3 PF13641.6 gi|219852930|ref|YP_002467362.1| - 3.6e-23 82.7 0.0 4.6e-18 66.0 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|219852930|ref|YP_002467362.1| - 1.1e-19 70.9 0.0 1.4e-08 34.7 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|219852930|ref|YP_002467362.1| - 0.00044 20.2 0.7 0.0012 18.8 0.7 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|219852930|ref|YP_002467362.1| - 0.0058 16.1 0.0 0.72 9.3 0.0 2.2 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219852930|ref|YP_002467362.1| - 0.11 13.0 0.0 0.87 10.1 0.0 2.3 1 1 0 1 1 1 0 Glycosyl transferase family 2 OTCace PF00185.24 gi|219852931|ref|YP_002467363.1| - 6.8e-56 188.7 0.0 9.8e-56 188.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|219852931|ref|YP_002467363.1| - 4.2e-52 176.1 0.1 6.5e-52 175.5 0.1 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GARS_A PF01071.19 gi|219852932|ref|YP_002467364.1| - 6.8e-57 192.4 0.0 1e-56 191.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|219852932|ref|YP_002467364.1| - 2.7e-26 92.1 1.2 7.7e-26 90.7 0.8 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|219852932|ref|YP_002467364.1| - 9.6e-16 57.8 0.5 1e-14 54.6 0.2 2.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|219852932|ref|YP_002467364.1| - 0.00045 19.5 0.0 0.0025 17.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|219852932|ref|YP_002467364.1| - 0.00068 19.7 0.0 0.0018 18.4 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|219852932|ref|YP_002467364.1| - 0.061 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Pribosyltran PF00156.27 gi|219852933|ref|YP_002467365.1| - 9.3e-15 54.5 2.9 1.3e-14 54.0 2.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|219852933|ref|YP_002467365.1| - 0.051 13.0 0.3 0.077 12.4 0.3 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|219852933|ref|YP_002467365.1| - 0.11 12.5 0.3 0.15 12.1 0.3 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain CarS-like PF01864.17 gi|219852934|ref|YP_002467366.1| - 2.7e-46 157.7 2.4 3.1e-46 157.5 2.4 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|219852934|ref|YP_002467366.1| - 3.4e-07 30.3 0.5 3.4e-07 30.3 0.5 1.7 2 0 0 2 2 2 1 Cytidylyltransferase family Radical_SAM PF04055.21 gi|219852935|ref|YP_002467367.1| - 1.1e-17 65.0 0.3 8e-17 62.1 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219852935|ref|YP_002467367.1| - 2.1e-07 31.3 0.0 4.4e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219852935|ref|YP_002467367.1| - 0.00017 21.7 0.0 0.00067 19.8 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain RimK PF08443.11 gi|219852936|ref|YP_002467368.1| - 5.4e-27 94.6 0.0 8.6e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|219852936|ref|YP_002467368.1| - 8.7e-10 38.9 0.0 1.7e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|219852936|ref|YP_002467368.1| - 4.8e-08 32.6 0.0 6.5e-07 28.9 0.0 2.2 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|219852936|ref|YP_002467368.1| - 7e-08 32.1 0.0 0.0011 18.2 0.0 2.4 2 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp R2K_3 PF14243.6 gi|219852936|ref|YP_002467368.1| - 1.4e-06 28.5 0.1 2.6e-06 27.6 0.1 1.3 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 ATPgrasp_YheCD PF14398.6 gi|219852936|ref|YP_002467368.1| - 0.0002 20.7 0.0 0.13 11.5 0.0 2.5 1 1 0 2 2 2 2 YheC/D like ATP-grasp GSP_synth PF03738.14 gi|219852936|ref|YP_002467368.1| - 0.021 14.0 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 Glutathionylspermidine synthase preATP-grasp R2K_2 PF18299.1 gi|219852936|ref|YP_002467368.1| - 0.065 13.1 0.0 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 DUF2114 PF09887.9 gi|219852938|ref|YP_002467370.1| - 3.5e-223 741.0 0.0 4e-223 740.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DUF2448 PF10476.9 gi|219852939|ref|YP_002467371.1| - 7.8 6.3 13.4 0.067 13.0 2.3 2.5 1 1 2 3 3 3 0 Protein of unknown function C-terminus (DUF2448) PKD PF00801.20 gi|219852940|ref|YP_002467372.1| - 3.9e-40 135.6 28.5 2.8e-12 46.3 4.1 4.8 5 0 0 5 5 5 4 PKD domain Beta_helix PF13229.6 gi|219852940|ref|YP_002467372.1| - 4.4e-07 29.9 16.3 9.6e-05 22.3 16.2 3.1 2 1 0 2 2 2 1 Right handed beta helix region Dockerin_1 PF00404.18 gi|219852940|ref|YP_002467372.1| - 8.5e-06 25.9 1.3 2.2e-05 24.6 1.3 1.8 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|219852940|ref|YP_002467372.1| - 0.00027 20.3 4.7 0.049 13.2 0.7 2.5 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.6 gi|219852940|ref|YP_002467372.1| - 0.0028 17.5 2.9 0.13 12.2 0.4 2.7 2 0 0 2 2 2 1 EF-hand domain EF-hand_8 PF13833.6 gi|219852940|ref|YP_002467372.1| - 0.0055 16.5 5.1 0.085 12.7 1.0 2.4 2 0 0 2 2 2 1 EF-hand domain pair Pectate_lyase_3 PF12708.7 gi|219852940|ref|YP_002467372.1| - 0.018 14.9 15.1 0.088 12.6 3.8 3.5 3 1 0 3 3 3 0 Pectate lyase superfamily protein Pentapeptide_4 PF13599.6 gi|219852940|ref|YP_002467372.1| - 0.07 13.3 0.2 0.26 11.5 0.2 1.9 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) MG2 PF01835.19 gi|219852940|ref|YP_002467372.1| - 0.9 10.0 5.0 17 6.0 0.3 3.7 3 1 1 4 4 4 0 MG2 domain PKD_3 PF16820.5 gi|219852940|ref|YP_002467372.1| - 1.3 8.9 5.2 2.1 8.1 0.1 3.3 4 0 0 4 4 4 0 PKD-like domain EF-hand_5 PF13202.6 gi|219852940|ref|YP_002467372.1| - 1.6 8.4 7.7 5.6 6.6 1.1 2.5 2 0 0 2 2 2 0 EF hand NHL PF01436.21 gi|219852941|ref|YP_002467373.1| - 5.4e-49 161.9 8.1 2.1e-09 36.9 0.2 6.7 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.11 gi|219852941|ref|YP_002467373.1| - 1.1e-19 70.1 19.8 0.00041 20.3 0.3 7.0 6 0 0 6 6 6 5 Beta-propeller repeat SGL PF08450.12 gi|219852941|ref|YP_002467373.1| - 2.4e-18 66.6 5.4 0.00061 19.4 0.1 6.1 1 1 3 5 5 5 5 SMP-30/Gluconolactonase/LRE-like region DUF5128 PF17170.4 gi|219852941|ref|YP_002467373.1| - 2.1e-14 53.4 2.6 0.00014 21.1 0.2 4.2 1 1 2 4 4 4 4 6-bladed beta-propeller Phytase-like PF13449.6 gi|219852941|ref|YP_002467373.1| - 1.3e-09 38.4 0.3 0.08 12.9 0.0 5.7 2 1 3 6 6 6 2 Esterase-like activity of phytase Arylesterase PF01731.20 gi|219852941|ref|YP_002467373.1| - 5.3e-05 23.3 1.3 1.5 9.1 0.0 4.1 5 0 0 5 5 5 2 Arylesterase Dockerin_1 PF00404.18 gi|219852941|ref|YP_002467373.1| - 0.00095 19.3 1.3 0.00095 19.3 1.3 2.1 2 0 0 2 2 2 1 Dockerin type I domain SdiA-regulated PF06977.11 gi|219852941|ref|YP_002467373.1| - 0.0054 16.0 3.0 41 3.3 0.0 4.9 4 1 0 5 5 5 0 SdiA-regulated EF-hand_6 PF13405.6 gi|219852941|ref|YP_002467373.1| - 0.018 15.0 4.7 1.9 8.6 0.3 2.7 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|219852941|ref|YP_002467373.1| - 0.46 10.2 11.4 1.3 8.8 0.5 3.0 3 0 0 3 3 3 0 EF hand EF-hand_8 PF13833.6 gi|219852941|ref|YP_002467373.1| - 4.2 7.3 5.0 18 5.3 0.3 2.4 2 0 0 2 2 2 0 EF-hand domain pair tRNA-synt_1c PF00749.21 gi|219852943|ref|YP_002467375.1| - 1.8e-76 257.0 0.0 2.4e-76 256.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|219852943|ref|YP_002467375.1| - 9.1e-22 77.8 0.0 1.7e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|219852943|ref|YP_002467375.1| - 0.03 13.2 0.0 0.89 8.4 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF4338 PF14236.6 gi|219852943|ref|YP_002467375.1| - 0.078 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4338) OHCU_decarbox PF09349.10 gi|219852943|ref|YP_002467375.1| - 0.16 12.4 0.0 0.53 10.8 0.0 1.7 1 1 0 1 1 1 0 OHCU decarboxylase polyprenyl_synt PF00348.17 gi|219852944|ref|YP_002467376.1| - 1.4e-65 220.9 0.4 1.7e-65 220.6 0.4 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase RMMBL PF07521.12 gi|219852945|ref|YP_002467377.1| - 2.4e-08 33.8 0.7 9.5e-08 31.9 0.0 2.3 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|219852945|ref|YP_002467377.1| - 2.8e-08 34.0 1.0 5.6e-08 33.0 0.4 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219852945|ref|YP_002467377.1| - 9.7e-08 31.8 0.3 9.7e-08 31.8 0.3 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FMN_dh PF01070.18 gi|219852946|ref|YP_002467378.1| - 1.8e-25 89.8 1.5 6.2e-18 64.9 2.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|219852946|ref|YP_002467378.1| - 6.7e-07 28.6 0.2 0.0003 19.9 0.1 2.4 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|219852946|ref|YP_002467378.1| - 0.0023 17.1 0.3 0.0023 17.1 0.3 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase NMO PF03060.15 gi|219852946|ref|YP_002467378.1| - 0.0089 15.5 0.1 0.014 14.8 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|219852946|ref|YP_002467378.1| - 0.027 13.7 0.0 0.054 12.7 0.0 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TGT PF01702.18 gi|219852946|ref|YP_002467378.1| - 0.24 10.5 0.0 0.41 9.7 0.0 1.3 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase AA_kinase PF00696.28 gi|219852947|ref|YP_002467379.1| - 6.8e-31 107.7 3.3 7.7e-31 107.5 3.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family OmpA PF00691.20 gi|219852947|ref|YP_002467379.1| - 0.035 14.5 0.1 0.25 11.7 0.0 2.0 1 1 1 2 2 2 0 OmpA family Phage_Mu_Gp45 PF06890.12 gi|219852947|ref|YP_002467379.1| - 0.045 13.5 0.3 0.19 11.5 0.1 2.2 2 0 0 2 2 2 0 Bacteriophage Mu Gp45 protein GHMP_kinases_N PF00288.26 gi|219852948|ref|YP_002467380.1| - 7.3e-15 55.0 0.1 1.6e-14 53.9 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|219852948|ref|YP_002467380.1| - 3.6e-11 43.3 0.3 3.6e-11 43.3 0.3 1.7 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|219852948|ref|YP_002467380.1| - 0.00081 18.9 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.17 gi|219852949|ref|YP_002467381.1| - 4.3e-65 219.6 0.0 4.9e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|219852949|ref|YP_002467381.1| - 0.046 12.8 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|219852950|ref|YP_002467382.1| - 4.3e-28 98.0 0.2 4.9e-14 52.1 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 CbtA_toxin PF06755.12 gi|219852950|ref|YP_002467382.1| - 0.018 15.1 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 CbtA_toxin of type IV toxin-antitoxin system PHP PF02811.19 gi|219852950|ref|YP_002467382.1| - 0.18 12.1 0.0 0.43 10.9 0.0 1.5 2 0 0 2 2 2 0 PHP domain Phage_lysozyme PF00959.19 gi|219852950|ref|YP_002467382.1| - 0.18 12.2 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 Phage lysozyme Enolase_C PF00113.22 gi|219852951|ref|YP_002467383.1| - 7.5e-71 238.8 0.4 1e-70 238.3 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|219852951|ref|YP_002467383.1| - 1.9e-36 125.2 0.5 8.1e-36 123.1 0.2 2.3 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|219852951|ref|YP_002467383.1| - 1e-09 38.3 0.1 1.6e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|219852951|ref|YP_002467383.1| - 0.00046 19.4 0.2 0.00093 18.4 0.2 1.6 1 1 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|219852952|ref|YP_002467384.1| - 5.9e-14 51.7 0.1 7.2e-14 51.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|219852953|ref|YP_002467385.1| - 9.8e-30 102.6 0.2 1.1e-29 102.5 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|219852954|ref|YP_002467386.1| - 2.7e-33 115.1 0.5 3e-33 114.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|219852955|ref|YP_002467387.1| - 1.8e-06 28.2 0.0 0.00031 21.0 0.0 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|219852956|ref|YP_002467388.1| - 1.9e-11 43.7 0.2 2.3e-11 43.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|219852956|ref|YP_002467388.1| - 1.5e-07 32.1 0.1 2e-07 31.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|219852957|ref|YP_002467389.1| - 1.3e-27 96.4 0.0 2.5e-27 95.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|219852957|ref|YP_002467389.1| - 3.2e-12 45.7 0.0 4.9e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|219852957|ref|YP_002467389.1| - 2.3e-06 27.7 20.5 3.2e-05 24.0 9.3 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219852957|ref|YP_002467389.1| - 8.5e-05 22.6 8.0 8.5e-05 22.6 8.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219852957|ref|YP_002467389.1| - 0.0001 22.8 14.0 0.0003 21.3 8.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219852957|ref|YP_002467389.1| - 0.00028 20.6 3.0 0.00028 20.6 3.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219852957|ref|YP_002467389.1| - 0.0037 17.8 10.8 0.31 11.6 0.7 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219852957|ref|YP_002467389.1| - 0.044 14.7 14.5 0.084 13.8 1.5 3.5 2 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|219852957|ref|YP_002467389.1| - 0.045 13.9 4.4 0.045 13.9 4.4 3.6 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219852957|ref|YP_002467389.1| - 0.11 12.6 22.6 0.38 10.9 3.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|219852957|ref|YP_002467389.1| - 0.17 12.3 16.6 0.52 10.8 0.1 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219852957|ref|YP_002467389.1| - 0.76 10.4 24.3 0.13 12.8 2.1 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S11 PF00411.19 gi|219852958|ref|YP_002467390.1| - 4.9e-47 158.9 8.5 1.7e-46 157.2 8.5 1.7 1 1 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|219852959|ref|YP_002467391.1| - 2.9e-14 52.5 0.2 6.2e-14 51.4 0.2 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|219852959|ref|YP_002467391.1| - 3.4e-05 24.7 1.7 4.9e-05 24.2 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|219852960|ref|YP_002467392.1| - 9.2e-39 132.8 1.8 1.1e-38 132.5 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 DS PF01916.17 gi|219852961|ref|YP_002467393.1| - 2.1e-93 312.8 0.0 2.3e-93 312.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Arch_flagellin PF01917.16 gi|219852963|ref|YP_002467395.1| - 3.8e-39 134.5 10.5 4.4e-39 134.3 10.5 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|219852964|ref|YP_002467396.1| - 1.1e-37 129.7 13.6 1.3e-37 129.5 13.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|219852965|ref|YP_002467397.1| - 5.6e-25 88.4 1.1 7.1e-25 88.1 1.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2808 PF10989.8 gi|219852965|ref|YP_002467397.1| - 0.017 15.1 0.1 0.031 14.3 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2808) Arch_flagellin PF01917.16 gi|219852966|ref|YP_002467398.1| - 3e-36 125.1 12.3 3.4e-36 124.9 12.3 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|219852967|ref|YP_002467399.1| - 3.6e-39 134.6 11.1 4.1e-39 134.4 11.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|219852968|ref|YP_002467400.1| - 1.8e-25 90.0 0.4 2.3e-25 89.7 0.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2808 PF10989.8 gi|219852968|ref|YP_002467400.1| - 0.0092 16.0 0.1 0.018 15.0 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2808) Arch_flagellin PF01917.16 gi|219852969|ref|YP_002467401.1| - 4.5e-37 127.8 14.1 5.1e-37 127.6 14.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Phage_holin_6_1 PF09682.10 gi|219852969|ref|YP_002467401.1| - 0.15 12.5 0.9 0.32 11.4 0.9 1.6 1 1 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Arch_flagellin PF01917.16 gi|219852970|ref|YP_002467402.1| - 1.2e-35 123.2 11.5 1.3e-35 123.0 11.5 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin ALS_ss_C PF10369.9 gi|219852971|ref|YP_002467403.1| - 2.6e-30 104.4 1.4 4.2e-30 103.8 0.3 1.8 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|219852971|ref|YP_002467403.1| - 1.1e-19 70.0 0.5 3.1e-19 68.5 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|219852971|ref|YP_002467403.1| - 1e-15 57.2 0.8 9.4e-15 54.1 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|219852971|ref|YP_002467403.1| - 1e-05 26.0 0.1 2.1e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 ACT domain Acylphosphatase PF00708.18 gi|219852971|ref|YP_002467403.1| - 0.053 13.9 0.1 4.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Acylphosphatase Poxvirus_B22R PF04395.12 gi|219852971|ref|YP_002467403.1| - 0.14 11.7 0.4 1.9 8.0 0.0 2.0 2 0 0 2 2 2 0 Poxvirus B22R protein TPP_enzyme_N PF02776.18 gi|219852972|ref|YP_002467404.1| - 2.2e-57 193.4 0.0 1.8e-56 190.4 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|219852972|ref|YP_002467404.1| - 1.6e-54 183.9 0.1 5.1e-54 182.2 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|219852972|ref|YP_002467404.1| - 1.5e-53 180.2 0.1 2.7e-53 179.4 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HMGL-like PF00682.19 gi|219852973|ref|YP_002467405.1| - 4.5e-75 252.6 0.4 4.5e-75 252.6 0.4 1.8 3 0 0 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|219852973|ref|YP_002467405.1| - 7.7e-30 103.5 4.9 7.7e-30 103.5 3.1 2.0 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain DUF4974 PF16344.5 gi|219852973|ref|YP_002467405.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) Ribosomal_S30AE PF02482.19 gi|219852973|ref|YP_002467405.1| - 0.17 12.7 0.1 1.3 9.8 0.2 2.3 1 1 1 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_S11 PF00411.19 gi|219852973|ref|YP_002467405.1| - 6.6 7.2 10.5 1.3 9.5 1.0 3.6 4 1 1 5 5 5 0 Ribosomal protein S11 dTDP_sugar_isom PF00908.17 gi|219852974|ref|YP_002467406.1| - 3e-17 62.8 0.0 3.3e-17 62.7 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|219852974|ref|YP_002467406.1| - 1.7e-06 27.7 0.0 2.2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|219852974|ref|YP_002467406.1| - 0.00071 19.2 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 Cupin domain GDP_Man_Dehyd PF16363.5 gi|219852975|ref|YP_002467407.1| - 2.2e-88 296.9 0.0 2.5e-88 296.7 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|219852975|ref|YP_002467407.1| - 5e-70 235.7 0.0 6.1e-70 235.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|219852975|ref|YP_002467407.1| - 7.1e-24 84.5 0.0 5.9e-23 81.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|219852975|ref|YP_002467407.1| - 2.3e-21 76.0 0.0 3.2e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|219852975|ref|YP_002467407.1| - 1.6e-19 70.1 0.0 4.2e-19 68.7 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|219852975|ref|YP_002467407.1| - 1e-14 54.4 0.1 2.4e-13 49.8 0.1 2.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|219852975|ref|YP_002467407.1| - 2.4e-11 43.8 0.0 3.5e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|219852975|ref|YP_002467407.1| - 0.00051 19.6 0.0 0.13 11.7 0.0 2.5 3 0 0 3 3 3 2 short chain dehydrogenase Semialdhyde_dh PF01118.24 gi|219852975|ref|YP_002467407.1| - 0.062 13.7 0.0 0.16 12.4 0.0 1.8 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.13 gi|219852975|ref|YP_002467407.1| - 0.069 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family KR PF08659.10 gi|219852975|ref|YP_002467407.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 KR domain RmlD_sub_bind PF04321.17 gi|219852976|ref|YP_002467408.1| - 9.5e-72 241.5 0.0 1.1e-71 241.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|219852976|ref|YP_002467408.1| - 7.1e-16 58.4 0.0 1.1e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|219852976|ref|YP_002467408.1| - 1.2e-10 41.3 0.0 1.5e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|219852976|ref|YP_002467408.1| - 5.6e-07 29.0 0.0 3.1e-06 26.6 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|219852976|ref|YP_002467408.1| - 9e-06 24.9 0.0 1.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|219852976|ref|YP_002467408.1| - 0.0052 16.0 0.6 0.013 14.6 0.0 1.9 2 1 0 2 2 2 1 Male sterility protein NTP_transferase PF00483.23 gi|219852977|ref|YP_002467409.1| - 1.4e-51 175.5 0.0 1.5e-51 175.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|219852977|ref|YP_002467409.1| - 1e-12 48.7 0.0 1.3e-12 48.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|219852977|ref|YP_002467409.1| - 0.026 14.4 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase NAD_binding_3 PF03447.16 gi|219852978|ref|YP_002467410.1| - 7.4e-08 33.1 0.0 1.9e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|219852978|ref|YP_002467410.1| - 2.5e-05 24.7 0.0 8.3e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain SAF PF08666.12 gi|219852978|ref|YP_002467410.1| - 0.005 17.4 0.2 0.024 15.3 0.2 2.2 1 1 1 2 2 2 2 SAF domain DapB_N PF01113.20 gi|219852978|ref|YP_002467410.1| - 0.01 16.0 0.9 0.019 15.1 0.1 1.9 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|219852978|ref|YP_002467410.1| - 0.078 13.2 0.1 8 6.7 0.0 2.7 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain ThiF PF00899.21 gi|219852978|ref|YP_002467410.1| - 0.16 11.3 0.1 0.47 9.8 0.0 1.9 2 0 0 2 2 2 0 ThiF family Glycos_transf_2 PF00535.26 gi|219852979|ref|YP_002467411.1| - 5.1e-17 62.2 0.0 6.5e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|219852979|ref|YP_002467411.1| - 0.00017 21.6 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|219852979|ref|YP_002467411.1| - 0.075 13.6 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 TraQ PF09679.10 gi|219852979|ref|YP_002467411.1| - 0.23 11.4 0.3 0.7 9.8 0.1 1.9 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) Peptidase_M42 PF05343.14 gi|219852980|ref|YP_002467412.1| - 7.5e-105 350.1 0.7 8.7e-105 349.9 0.7 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|219852980|ref|YP_002467412.1| - 1.2e-13 51.3 0.1 2e-13 50.5 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|219852980|ref|YP_002467412.1| - 0.0004 20.1 0.0 0.038 13.7 0.0 2.4 2 1 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|219852980|ref|YP_002467412.1| - 0.00077 18.4 0.0 0.0047 15.8 0.0 1.9 1 1 1 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Aminotran_1_2 PF00155.21 gi|219852981|ref|YP_002467413.1| - 8.7e-57 192.9 0.0 9.7e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|219852981|ref|YP_002467413.1| - 3.8e-08 32.7 0.0 4.9e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|219852981|ref|YP_002467413.1| - 0.00049 19.5 0.1 0.00075 18.9 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|219852981|ref|YP_002467413.1| - 0.0028 16.3 0.0 0.004 15.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|219852981|ref|YP_002467413.1| - 0.0047 16.3 0.0 0.0079 15.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SIS PF01380.22 gi|219852982|ref|YP_002467414.1| - 5.9e-16 58.5 0.0 1.1e-15 57.6 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|219852982|ref|YP_002467414.1| - 5.4e-07 29.7 1.9 0.005 16.9 0.1 3.0 2 1 1 3 3 3 2 SIS domain DUF2529 PF10740.9 gi|219852982|ref|YP_002467414.1| - 0.065 12.9 0.1 0.2 11.3 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF2529) ANAPC2 PF08672.11 gi|219852982|ref|YP_002467414.1| - 0.093 13.3 0.1 0.19 12.3 0.1 1.6 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 DUF3784 PF12650.7 gi|219852983|ref|YP_002467415.1| - 4.3e-12 46.1 5.2 5.7e-12 45.7 5.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) DUF4579 PF15158.6 gi|219852983|ref|YP_002467415.1| - 0.058 13.2 0.5 0.09 12.5 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4579) FtsX PF02687.21 gi|219852983|ref|YP_002467415.1| - 0.23 11.9 12.8 0.72 10.4 12.8 1.9 1 1 0 1 1 1 0 FtsX-like permease family CitMHS PF03600.16 gi|219852983|ref|YP_002467415.1| - 2.4 7.3 7.6 2.8 7.1 7.6 1.2 1 0 0 1 1 1 0 Citrate transporter ECSCR PF15820.5 gi|219852983|ref|YP_002467415.1| - 2.9 7.8 5.1 4.5 7.2 0.4 2.3 1 1 1 2 2 2 0 Endothelial cell-specific chemotaxis regulator DUF3821 PF12863.7 gi|219852984|ref|YP_002467416.1| - 1.4e-54 185.2 4.3 1.4e-54 185.2 4.3 4.1 4 2 1 5 5 5 2 Domain of unknown function (DUF3821) PGF-CTERM PF18204.1 gi|219852984|ref|YP_002467416.1| - 1.7e-06 27.8 7.6 3.9e-06 26.6 7.6 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Big_7 PF17957.1 gi|219852984|ref|YP_002467416.1| - 0.0015 19.3 7.6 0.0015 19.3 7.6 8.8 8 2 0 8 8 8 2 Bacterial Ig domain TrkA_C PF02080.21 gi|219852984|ref|YP_002467416.1| - 0.14 12.0 0.1 0.47 10.3 0.0 1.9 2 0 0 2 2 2 0 TrkA-C domain Pilin_N PF07790.11 gi|219852986|ref|YP_002467418.1| - 5e-19 69.0 8.5 8.2e-19 68.3 8.5 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4054 PF13262.6 gi|219852986|ref|YP_002467418.1| - 0.12 12.4 0.6 0.22 11.5 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4054) SurA_N_3 PF13624.6 gi|219852986|ref|YP_002467418.1| - 0.33 10.7 1.5 0.44 10.3 1.5 1.2 1 0 0 1 1 1 0 SurA N-terminal domain Trp_oprn_chp PF09534.10 gi|219852986|ref|YP_002467418.1| - 0.37 10.6 5.4 0.46 10.3 5.4 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HcyBio PF01837.16 gi|219852987|ref|YP_002467419.1| - 0.2 10.4 0.3 0.27 10.0 0.3 1.1 1 0 0 1 1 1 0 Homocysteine biosynthesis enzyme, sulfur-incorporation Pilin_N PF07790.11 gi|219852988|ref|YP_002467420.1| - 1.3e-15 58.1 3.2 1.3e-15 58.1 3.2 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Prominin PF05478.11 gi|219852988|ref|YP_002467420.1| - 0.054 11.4 0.1 0.06 11.3 0.1 1.0 1 0 0 1 1 1 0 Prominin HRG PF16954.5 gi|219852988|ref|YP_002467420.1| - 0.1 13.0 0.4 0.15 12.5 0.4 1.3 1 0 0 1 1 1 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene SurA_N_3 PF13624.6 gi|219852988|ref|YP_002467420.1| - 0.37 10.6 1.1 0.46 10.3 1.1 1.2 1 0 0 1 1 1 0 SurA N-terminal domain Lipoprotein_15 PF03640.15 gi|219852989|ref|YP_002467421.1| - 4.6e-20 70.9 8.8 7.7e-11 41.4 0.5 4.3 4 0 0 4 4 4 3 Secreted repeat of unknown function Lip_A_acyltrans PF03279.13 gi|219852989|ref|YP_002467421.1| - 0.4 9.8 2.4 0.68 9.1 2.4 1.3 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase TFIIA PF03153.13 gi|219852989|ref|YP_002467421.1| - 0.63 10.0 17.1 0.75 9.7 17.1 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit FMN_red PF03358.15 gi|219852990|ref|YP_002467422.1| - 1.4e-19 70.4 0.0 4e-19 68.9 0.0 1.6 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219852990|ref|YP_002467422.1| - 0.0016 18.2 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|219852990|ref|YP_002467422.1| - 0.22 11.8 0.0 25 5.1 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin domain PspC PF04024.12 gi|219852991|ref|YP_002467423.1| - 1.6e-22 79.0 0.8 1.8e-22 78.9 0.8 1.0 1 0 0 1 1 1 1 PspC domain MHB PF16525.5 gi|219852992|ref|YP_002467424.1| - 0.0013 18.9 0.0 0.095 13.0 0.0 2.2 2 0 0 2 2 2 2 Haemophore, haem-binding Closter_coat PF01785.17 gi|219852992|ref|YP_002467424.1| - 0.0094 15.2 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Closterovirus coat protein RHH_1 PF01402.21 gi|219852994|ref|YP_002467426.1| - 4.2e-05 23.3 3.2 0.0004 20.2 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family ATG16 PF08614.11 gi|219852994|ref|YP_002467426.1| - 0.0068 16.7 1.5 0.0089 16.3 1.5 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) ALIX_LYPXL_bnd PF13949.6 gi|219852994|ref|YP_002467426.1| - 0.017 14.5 0.3 0.018 14.3 0.3 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV BLOC1_2 PF10046.9 gi|219852994|ref|YP_002467426.1| - 0.077 13.3 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HicB_lk_antitox PF15919.5 gi|219852994|ref|YP_002467426.1| - 0.079 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system HTH_24 PF13412.6 gi|219852995|ref|YP_002467427.1| - 6.1e-05 22.5 0.0 8.1e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|219852995|ref|YP_002467427.1| - 0.0027 17.7 0.0 0.0036 17.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|219852995|ref|YP_002467427.1| - 0.01 15.7 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.12 gi|219852995|ref|YP_002467427.1| - 0.022 14.7 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_9 PF08221.11 gi|219852995|ref|YP_002467427.1| - 0.053 13.6 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|219852995|ref|YP_002467427.1| - 0.076 12.9 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.9 gi|219852995|ref|YP_002467427.1| - 0.083 13.1 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) HTH_43 PF09904.9 gi|219852995|ref|YP_002467427.1| - 0.13 12.2 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix YbjQ_1 PF01906.17 gi|219852996|ref|YP_002467428.1| - 1.7e-36 125.0 0.2 1.9e-36 124.9 0.2 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|219852996|ref|YP_002467428.1| - 0.0025 18.1 0.3 0.0062 16.9 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4156) HD PF01966.22 gi|219852997|ref|YP_002467429.1| - 3.8e-19 69.1 0.2 5.4e-19 68.6 0.2 1.2 1 0 0 1 1 1 1 HD domain FUSC_2 PF13515.6 gi|219852999|ref|YP_002467431.1| - 2.6e-13 50.2 7.9 3e-13 50.0 7.2 1.4 1 1 0 1 1 1 1 Fusaric acid resistance protein-like ArAE_1 PF06081.11 gi|219852999|ref|YP_002467431.1| - 3.3e-08 33.8 1.6 4.6e-08 33.3 1.4 1.4 1 1 0 1 1 1 1 Aromatic acid exporter family member 1 FUSC PF04632.12 gi|219852999|ref|YP_002467431.1| - 0.00081 18.1 6.4 0.0042 15.7 6.4 1.8 1 1 0 1 1 1 1 Fusaric acid resistance protein family YfhO PF09586.10 gi|219852999|ref|YP_002467431.1| - 0.086 11.1 2.0 0.12 10.6 2.0 1.3 1 1 0 1 1 1 0 Bacterial membrane protein YfhO TauE PF01925.19 gi|219853000|ref|YP_002467432.1| - 0.01 15.5 6.7 0.013 15.1 6.7 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE LrgA PF03788.14 gi|219853000|ref|YP_002467432.1| - 0.23 11.4 9.4 12 5.9 9.4 2.3 1 1 0 1 1 1 0 LrgA family PrgI PF12666.7 gi|219853000|ref|YP_002467432.1| - 8.1 7.2 11.1 1.2 9.9 6.1 1.8 1 1 1 2 2 2 0 PrgI family protein HTH_45 PF14947.6 gi|219853001|ref|YP_002467433.1| - 4.5e-09 36.2 0.0 5.3e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF3375 PF11855.8 gi|219853001|ref|YP_002467433.1| - 0.24 10.3 0.0 0.29 10.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) DUF3325 PF11804.8 gi|219853002|ref|YP_002467434.1| - 0.006 16.7 0.4 0.017 15.3 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3325) DUF2207 PF09972.9 gi|219853002|ref|YP_002467434.1| - 0.033 12.9 6.8 0.63 8.7 0.6 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2569 PF10754.9 gi|219853002|ref|YP_002467434.1| - 0.41 11.1 9.1 0.31 11.5 1.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2569) DUF5345 PF17280.2 gi|219853002|ref|YP_002467434.1| - 0.61 10.1 0.1 0.61 10.1 0.1 2.9 4 0 0 4 4 4 0 Family of unknown function (DUF5345) DUF308 PF03729.13 gi|219853002|ref|YP_002467434.1| - 0.78 10.1 15.4 0.3 11.5 5.9 2.5 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) Trehalose_recp PF06151.13 gi|219853002|ref|YP_002467434.1| - 4.5 5.8 12.0 0.67 8.5 0.3 2.9 1 1 2 3 3 3 0 Trehalose receptor HATPase_c PF02518.26 gi|219853003|ref|YP_002467435.1| - 0.0018 18.7 0.0 0.0036 17.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|219853003|ref|YP_002467435.1| - 0.013 15.5 0.0 0.033 14.2 0.0 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain DUF4464 PF14713.6 gi|219853003|ref|YP_002467435.1| - 0.048 13.2 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4464) DUF1724 PF08350.10 gi|219853004|ref|YP_002467436.1| - 9.9e-22 76.9 1.8 2.2e-21 75.7 1.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HxlR PF01638.17 gi|219853004|ref|YP_002467436.1| - 0.08 12.8 0.0 0.19 11.6 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix UbiA PF01040.18 gi|219853005|ref|YP_002467437.1| - 2.4e-14 53.3 13.3 3.8e-14 52.6 13.3 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family zf-LITAF-like PF10601.9 gi|219853005|ref|YP_002467437.1| - 2.1 8.7 4.9 12 6.2 0.1 3.3 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain MFS_1 PF07690.16 gi|219853007|ref|YP_002467439.1| - 5.2e-41 140.7 84.8 7.6e-33 113.9 44.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|219853007|ref|YP_002467439.1| - 0.0014 17.1 27.1 0.054 11.9 27.1 2.3 1 1 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|219853007|ref|YP_002467439.1| - 0.13 11.1 32.6 0.37 9.6 6.0 2.5 2 1 0 2 2 2 0 Sugar (and other) transporter MarR_2 PF12802.7 gi|219853008|ref|YP_002467440.1| - 2.9e-08 33.5 0.1 9.5e-08 31.8 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|219853008|ref|YP_002467440.1| - 2.2e-07 31.2 0.1 5e-07 30.1 0.1 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|219853008|ref|YP_002467440.1| - 1.3e-06 28.3 0.0 2.6e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|219853008|ref|YP_002467440.1| - 0.00027 20.8 0.0 0.00068 19.6 0.0 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|219853008|ref|YP_002467440.1| - 0.00028 21.0 0.0 0.00095 19.3 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|219853008|ref|YP_002467440.1| - 0.0022 17.5 0.0 0.0048 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|219853008|ref|YP_002467440.1| - 0.0038 17.1 0.1 0.0089 15.9 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|219853008|ref|YP_002467440.1| - 0.004 17.5 0.0 0.0069 16.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|219853008|ref|YP_002467440.1| - 0.011 15.5 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|219853008|ref|YP_002467440.1| - 0.048 13.7 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|219853008|ref|YP_002467440.1| - 0.11 12.7 0.4 0.38 11.0 0.0 2.0 1 1 1 2 2 2 0 S25 ribosomal protein DUF1348 PF07080.11 gi|219853009|ref|YP_002467441.1| - 1.6e-65 218.8 5.8 1.9e-65 218.7 5.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1348) SnoaL_2 PF12680.7 gi|219853009|ref|YP_002467441.1| - 0.00059 20.4 0.6 0.00079 20.0 0.6 1.2 1 0 0 1 1 1 1 SnoaL-like domain GCR1_C PF12550.8 gi|219853009|ref|YP_002467441.1| - 0.065 13.6 1.1 0.12 12.8 1.1 1.5 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes RQC PF09382.10 gi|219853011|ref|YP_002467443.1| - 7.3e-27 93.4 0.0 7.3e-26 90.2 0.0 2.2 2 0 0 2 2 2 1 RQC domain HRDC PF00570.23 gi|219853011|ref|YP_002467443.1| - 2.2e-22 78.8 0.0 4.9e-22 77.7 0.0 1.6 1 0 0 1 1 1 1 HRDC domain Helicase_C PF00271.31 gi|219853011|ref|YP_002467443.1| - 1.8e-21 76.6 0.0 6.4e-18 65.1 0.1 2.3 2 0 0 2 2 2 2 Helicase conserved C-terminal domain RecQ_Zn_bind PF16124.5 gi|219853011|ref|YP_002467443.1| - 2.8e-19 69.6 4.5 5.8e-19 68.6 4.5 1.6 1 0 0 1 1 1 1 RecQ zinc-binding DEAD PF00270.29 gi|219853011|ref|YP_002467443.1| - 2.6e-18 66.4 0.0 7.2e-18 65.0 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|219853011|ref|YP_002467443.1| - 0.00012 22.1 0.0 0.00026 21.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_Sgs1 PF11408.8 gi|219853011|ref|YP_002467443.1| - 0.0031 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Sgs1 RecQ helicase BTRD1 PF17660.1 gi|219853011|ref|YP_002467443.1| - 0.087 12.6 0.4 0.21 11.4 0.1 1.7 2 0 0 2 2 2 0 Bacterial tandem repeat domain 1 SecA_DEAD PF07517.14 gi|219853011|ref|YP_002467443.1| - 0.096 12.0 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain CxxCxxCC PF03692.15 gi|219853013|ref|YP_002467445.1| - 0.021 15.5 0.0 0.028 15.1 0.0 1.3 1 0 0 1 1 1 0 Putative zinc- or iron-chelating domain ABM PF03992.16 gi|219853014|ref|YP_002467446.1| - 2.5e-19 69.1 0.3 3.6e-19 68.6 0.3 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase rhaM PF05336.13 gi|219853014|ref|YP_002467446.1| - 0.025 14.6 0.2 0.034 14.2 0.2 1.2 1 0 0 1 1 1 0 L-rhamnose mutarotase Orn_Arg_deC_N PF02784.16 gi|219853015|ref|YP_002467447.1| - 1.4e-51 175.2 0.0 1.9e-51 174.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|219853015|ref|YP_002467447.1| - 1.1e-13 51.3 0.0 1.5e-13 50.8 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|219853015|ref|YP_002467447.1| - 4.6e-06 26.4 0.0 6.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Glycos_transf_2 PF00535.26 gi|219853016|ref|YP_002467448.1| - 1.9e-18 66.9 0.0 2.4e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|219853016|ref|YP_002467448.1| - 8.8e-07 28.7 0.0 1.2e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|219853016|ref|YP_002467448.1| - 0.00052 20.0 0.0 0.001 19.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Radical_SAM PF04055.21 gi|219853018|ref|YP_002467450.1| - 1.3e-11 45.2 0.0 2.2e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|219853018|ref|YP_002467450.1| - 0.00039 20.9 1.7 0.00097 19.6 1.7 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|219853018|ref|YP_002467450.1| - 0.0032 17.8 0.0 0.0061 16.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Methyltransf_11 PF08241.12 gi|219853019|ref|YP_002467451.1| - 5.1e-19 68.7 0.0 8.3e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219853019|ref|YP_002467451.1| - 6.2e-16 58.9 0.0 1.2e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219853019|ref|YP_002467451.1| - 3.1e-11 43.3 0.0 4e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|219853019|ref|YP_002467451.1| - 5.7e-10 38.9 0.0 1.3e-09 37.8 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|219853019|ref|YP_002467451.1| - 7.5e-08 33.0 0.0 1.2e-07 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|219853019|ref|YP_002467451.1| - 1.4e-07 31.1 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|219853019|ref|YP_002467451.1| - 7.1e-07 29.2 0.0 9.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|219853019|ref|YP_002467451.1| - 0.011 15.5 0.0 0.026 14.2 0.0 1.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF2064 PF09837.9 gi|219853020|ref|YP_002467452.1| - 3.1e-29 101.3 0.0 4.6e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|219853020|ref|YP_002467452.1| - 2e-06 27.2 0.0 3.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like HATPase_c PF02518.26 gi|219853021|ref|YP_002467453.1| - 1.7e-10 41.4 0.0 4.3e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219853021|ref|YP_002467453.1| - 4.8e-06 26.8 0.0 1.4e-05 25.3 0.0 1.8 2 0 0 2 2 2 1 PAS domain Acetyltransf_10 PF13673.7 gi|219853021|ref|YP_002467453.1| - 2.5e-05 24.2 0.0 5.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PAS_4 PF08448.10 gi|219853021|ref|YP_002467453.1| - 0.0012 19.0 0.0 0.0029 17.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold Acetyltransf_1 PF00583.25 gi|219853021|ref|YP_002467453.1| - 0.0046 17.2 0.1 0.0086 16.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|219853021|ref|YP_002467453.1| - 0.012 16.0 0.2 0.031 14.7 0.2 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HATPase_c_2 PF13581.6 gi|219853021|ref|YP_002467453.1| - 0.024 14.6 0.7 0.19 11.7 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|219853021|ref|YP_002467453.1| - 0.085 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GNAT_acetyltran PF12746.7 gi|219853021|ref|YP_002467453.1| - 0.24 10.9 0.0 0.42 10.1 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_4 PF13420.7 gi|219853022|ref|YP_002467454.1| - 7.7e-17 61.8 0.0 9e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|219853022|ref|YP_002467454.1| - 3.4e-14 53.1 0.0 4.2e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|219853022|ref|YP_002467454.1| - 6.2e-07 30.2 0.0 7.1e-07 30.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|219853022|ref|YP_002467454.1| - 2.7e-06 27.3 0.0 3.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|219853022|ref|YP_002467454.1| - 7.3e-06 26.3 0.0 9.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF998 PF06197.13 gi|219853023|ref|YP_002467455.1| - 2e-20 73.2 17.4 2.6e-20 72.8 17.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF981 PF06168.11 gi|219853023|ref|YP_002467455.1| - 0.0072 16.3 8.3 0.0072 16.3 8.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF981) Peripla_BP_6 PF13458.6 gi|219853024|ref|YP_002467456.1| - 6.2e-29 101.7 0.2 7.6e-29 101.4 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|219853024|ref|YP_002467456.1| - 3.9e-27 95.3 0.0 6e-27 94.7 0.0 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|219853024|ref|YP_002467456.1| - 6.3e-06 25.4 0.0 8.8e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.13 gi|219853024|ref|YP_002467456.1| - 0.00031 19.7 0.1 0.00043 19.2 0.1 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein SnoaL_2 PF12680.7 gi|219853026|ref|YP_002467458.1| - 0.00016 22.3 0.1 0.00018 22.1 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain LTD PF00932.19 gi|219853027|ref|YP_002467459.1| - 7.4e-21 74.6 0.1 2.8e-20 72.8 0.1 2.0 1 0 0 1 1 1 1 Lamin Tail Domain Lactamase_B PF00753.27 gi|219853027|ref|YP_002467459.1| - 1.6e-08 34.8 3.7 2.1e-07 31.2 2.6 2.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|219853027|ref|YP_002467459.1| - 1.5e-05 24.6 0.2 3.6e-05 23.4 0.2 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PPC PF04151.15 gi|219853027|ref|YP_002467459.1| - 0.35 12.0 2.5 0.85 10.8 0.3 2.7 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain EF-hand_1 PF00036.32 gi|219853027|ref|YP_002467459.1| - 0.54 9.9 3.2 0.21 11.2 0.4 1.9 2 0 0 2 2 2 0 EF hand CheB_methylest PF01339.17 gi|219853028|ref|YP_002467460.1| - 4.5e-56 189.2 0.0 8.1e-56 188.4 0.0 1.4 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 gi|219853028|ref|YP_002467460.1| - 2.3e-52 177.4 0.0 4e-52 176.6 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.6 gi|219853028|ref|YP_002467460.1| - 3.5e-29 101.5 0.0 8.3e-27 93.9 0.1 2.6 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|219853028|ref|YP_002467460.1| - 1.7e-16 60.4 0.6 1.2e-06 28.7 0.0 3.4 3 0 0 3 3 3 2 PAS fold CheR_N PF03705.15 gi|219853028|ref|YP_002467460.1| - 2.2e-16 59.3 0.3 4.6e-16 58.3 0.3 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS PF00989.25 gi|219853028|ref|YP_002467460.1| - 7.9e-09 35.5 0.3 1.5e-05 25.0 0.0 3.8 3 1 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|219853028|ref|YP_002467460.1| - 4.5e-08 33.3 0.1 0.00047 20.4 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|219853028|ref|YP_002467460.1| - 1.4e-05 24.9 0.0 0.00076 19.5 0.0 2.8 2 0 0 2 2 2 1 PAS domain Fez1 PF06818.15 gi|219853028|ref|YP_002467460.1| - 4.4e-05 24.0 11.8 8.5e-05 23.1 11.8 1.4 1 0 0 1 1 1 1 Fez1 HSD3 PF15244.6 gi|219853028|ref|YP_002467460.1| - 0.0011 18.5 3.2 0.0017 17.9 3.2 1.1 1 0 0 1 1 1 1 Spermatogenesis-associated protein 7, or HSD3 BicD PF09730.9 gi|219853028|ref|YP_002467460.1| - 0.0022 16.5 6.8 0.0033 15.9 6.8 1.1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D PAS_7 PF12860.7 gi|219853028|ref|YP_002467460.1| - 0.0024 18.0 4.6 2 8.6 0.0 4.4 5 1 0 5 5 3 1 PAS fold Spc7 PF08317.11 gi|219853028|ref|YP_002467460.1| - 0.0028 16.6 15.2 0.0048 15.8 15.2 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein Golgin_A5 PF09787.9 gi|219853028|ref|YP_002467460.1| - 0.0037 16.8 14.8 0.0062 16.1 14.8 1.2 1 0 0 1 1 1 1 Golgin subfamily A member 5 Rootletin PF15035.6 gi|219853028|ref|YP_002467460.1| - 0.0057 16.7 7.4 0.0057 16.7 7.4 1.6 2 0 0 2 2 1 1 Ciliary rootlet component, centrosome cohesion OmpH PF03938.14 gi|219853028|ref|YP_002467460.1| - 0.014 15.7 5.6 0.03 14.6 5.6 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HMMR_N PF15905.5 gi|219853028|ref|YP_002467460.1| - 0.015 14.8 14.1 0.024 14.1 14.1 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Exonuc_VII_L PF02601.15 gi|219853028|ref|YP_002467460.1| - 0.032 13.8 4.2 0.055 13.0 4.2 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Atg14 PF10186.9 gi|219853028|ref|YP_002467460.1| - 0.04 13.0 7.1 0.062 12.4 7.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Med30 PF11315.8 gi|219853028|ref|YP_002467460.1| - 0.042 14.1 6.0 0.079 13.1 6.0 1.4 1 0 0 1 1 1 0 Mediator complex subunit 30 IFT57 PF10498.9 gi|219853028|ref|YP_002467460.1| - 0.052 12.5 11.3 0.083 11.8 11.3 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Lebercilin PF15619.6 gi|219853028|ref|YP_002467460.1| - 0.052 13.2 19.6 0.13 11.9 19.6 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease TPR_MLP1_2 PF07926.12 gi|219853028|ref|YP_002467460.1| - 0.083 12.9 18.7 0.038 14.0 15.5 1.9 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Leu_zip PF15294.6 gi|219853028|ref|YP_002467460.1| - 0.092 12.2 11.4 0.15 11.5 11.4 1.2 1 0 0 1 1 1 0 Leucine zipper G10 PF01125.17 gi|219853028|ref|YP_002467460.1| - 0.12 12.2 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 G10 protein Snapin_Pallidin PF14712.6 gi|219853028|ref|YP_002467460.1| - 0.12 12.8 8.6 0.28 11.6 8.6 1.7 1 0 0 1 1 1 0 Snapin/Pallidin GAS PF13851.6 gi|219853028|ref|YP_002467460.1| - 0.14 11.5 15.7 0.23 10.8 15.7 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding CALCOCO1 PF07888.11 gi|219853028|ref|YP_002467460.1| - 0.15 10.9 14.9 0.23 10.3 14.9 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF3584 PF12128.8 gi|219853028|ref|YP_002467460.1| - 0.17 9.4 11.6 0.25 8.8 11.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) UPF0242 PF06785.11 gi|219853028|ref|YP_002467460.1| - 0.18 11.9 13.3 0.39 10.8 13.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus LMBR1 PF04791.16 gi|219853028|ref|YP_002467460.1| - 0.21 10.4 2.8 0.3 9.9 2.8 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4527 PF15030.6 gi|219853028|ref|YP_002467460.1| - 0.22 10.9 6.7 0.35 10.3 5.8 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF4527) Macoilin PF09726.9 gi|219853028|ref|YP_002467460.1| - 0.31 9.5 5.6 0.45 9.0 5.6 1.1 1 0 0 1 1 1 0 Macoilin family GrpE PF01025.19 gi|219853028|ref|YP_002467460.1| - 0.31 10.7 8.0 0.67 9.6 8.0 1.5 1 0 0 1 1 1 0 GrpE Borrelia_P83 PF05262.11 gi|219853028|ref|YP_002467460.1| - 0.32 9.4 7.3 0.47 8.9 7.3 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein ATG16 PF08614.11 gi|219853028|ref|YP_002467460.1| - 0.37 11.0 21.2 0.6 10.3 21.2 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) HAP1_N PF04849.13 gi|219853028|ref|YP_002467460.1| - 0.38 9.9 18.5 0.56 9.4 18.5 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region HemX PF04375.14 gi|219853028|ref|YP_002467460.1| - 0.47 9.7 8.9 0.73 9.1 8.9 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF812 PF05667.11 gi|219853028|ref|YP_002467460.1| - 0.49 9.2 11.4 0.79 8.5 11.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) V_ATPase_I PF01496.19 gi|219853028|ref|YP_002467460.1| - 0.52 8.2 4.7 0.77 7.6 4.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APG6_N PF17675.1 gi|219853028|ref|YP_002467460.1| - 0.55 10.8 17.8 1 9.9 17.8 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region Syntaxin-6_N PF09177.11 gi|219853028|ref|YP_002467460.1| - 0.56 10.8 16.5 24 5.5 0.0 3.4 2 2 0 2 2 2 0 Syntaxin 6, N-terminal DUF1664 PF07889.12 gi|219853028|ref|YP_002467460.1| - 0.58 10.2 6.4 1.5 8.9 6.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|219853028|ref|YP_002467460.1| - 0.58 9.5 3.9 0.94 8.8 3.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) 5_nucleotid PF05761.14 gi|219853028|ref|YP_002467460.1| - 0.65 8.8 2.6 0.99 8.2 2.6 1.1 1 0 0 1 1 1 0 5' nucleotidase family Laminin_II PF06009.12 gi|219853028|ref|YP_002467460.1| - 0.68 9.9 9.4 1.6 8.8 9.4 1.5 1 0 0 1 1 1 0 Laminin Domain II HOOK PF05622.12 gi|219853028|ref|YP_002467460.1| - 0.69 8.0 13.8 1 7.4 13.8 1.1 1 0 0 1 1 1 0 HOOK protein UPF0449 PF15136.6 gi|219853028|ref|YP_002467460.1| - 0.75 10.3 17.1 3.6 8.1 3.7 3.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 HAUS-augmin3 PF14932.6 gi|219853028|ref|YP_002467460.1| - 0.86 9.1 12.7 1.4 8.5 12.7 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 CENP-F_leu_zip PF10473.9 gi|219853028|ref|YP_002467460.1| - 0.89 9.6 20.2 2.1 8.4 20.2 1.5 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CC2-LZ PF16516.5 gi|219853028|ref|YP_002467460.1| - 1 9.7 14.6 5.8 7.4 9.9 2.6 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator CRR7 PF12095.8 gi|219853028|ref|YP_002467460.1| - 1.1 9.7 7.4 0.14 12.6 1.9 2.3 1 1 1 2 2 1 0 Protein CHLORORESPIRATORY REDUCTION 7 HIP1_clath_bdg PF16515.5 gi|219853028|ref|YP_002467460.1| - 1.2 9.8 19.1 0.84 10.3 17.3 1.7 2 0 0 2 2 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DivIC PF04977.15 gi|219853028|ref|YP_002467460.1| - 1.3 8.8 10.3 5.6 6.8 1.2 2.6 1 1 1 2 2 2 0 Septum formation initiator FapA PF03961.13 gi|219853028|ref|YP_002467460.1| - 1.4 7.4 9.6 2.2 6.8 9.6 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Com_YlbF PF06133.11 gi|219853028|ref|YP_002467460.1| - 1.5 9.5 10.2 4.3 8.0 10.1 1.7 2 0 0 2 2 1 0 Control of competence regulator ComK, YlbF/YmcA Cortex-I_coil PF09304.10 gi|219853028|ref|YP_002467460.1| - 1.5 9.1 12.3 3.2 8.0 12.3 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Cluap1 PF10234.9 gi|219853028|ref|YP_002467460.1| - 1.7 7.9 11.0 3 7.2 11.0 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 Seryl_tRNA_N PF02403.22 gi|219853028|ref|YP_002467460.1| - 1.7 8.9 13.0 5.9 7.2 13.0 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain ADIP PF11559.8 gi|219853028|ref|YP_002467460.1| - 1.7 8.7 14.7 3.7 7.6 14.7 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF16 PF01519.16 gi|219853028|ref|YP_002467460.1| - 1.7 9.1 9.2 4.2 7.9 9.2 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3450 PF11932.8 gi|219853028|ref|YP_002467460.1| - 1.8 7.8 14.0 3.2 7.0 14.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) KxDL PF10241.9 gi|219853028|ref|YP_002467460.1| - 2 8.8 12.0 7.7 6.9 2.6 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein WXG100 PF06013.12 gi|219853028|ref|YP_002467460.1| - 2.3 8.5 5.5 16 5.8 5.5 2.2 1 1 0 1 1 1 0 Proteins of 100 residues with WXG DUF2203 PF09969.9 gi|219853028|ref|YP_002467460.1| - 2.5 8.8 4.9 7 7.4 4.9 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|219853028|ref|YP_002467460.1| - 2.5 7.3 10.2 3.7 6.7 10.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein COG5 PF10392.9 gi|219853028|ref|YP_002467460.1| - 2.7 8.2 10.0 5.7 7.1 10.0 1.4 1 0 0 1 1 1 0 Golgi transport complex subunit 5 DUF724 PF05266.14 gi|219853028|ref|YP_002467460.1| - 3.8 7.3 12.9 6 6.6 12.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Cytochrom_B562 PF07361.11 gi|219853028|ref|YP_002467460.1| - 4 8.2 6.1 13 6.5 6.2 1.8 1 1 1 2 2 2 0 Cytochrome b562 Fmp27_WPPW PF10359.9 gi|219853028|ref|YP_002467460.1| - 4 6.2 9.6 6 5.6 9.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF745 PF05335.13 gi|219853028|ref|YP_002467460.1| - 4.6 6.9 7.4 7.8 6.2 7.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) COG2 PF06148.11 gi|219853028|ref|YP_002467460.1| - 4.6 7.3 10.8 15 5.7 8.9 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Prominin PF05478.11 gi|219853028|ref|YP_002467460.1| - 5.4 4.8 7.3 7.7 4.3 7.3 1.1 1 0 0 1 1 1 0 Prominin bZIP_1 PF00170.21 gi|219853028|ref|YP_002467460.1| - 5.8 7.1 14.6 23 5.2 9.4 2.7 1 1 2 3 3 2 0 bZIP transcription factor DUF3552 PF12072.8 gi|219853028|ref|YP_002467460.1| - 6.3 6.2 19.1 1.5 8.2 15.7 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF3552) Sec8_exocyst PF04048.14 gi|219853028|ref|YP_002467460.1| - 8 6.3 11.1 1e+02 2.8 11.0 2.3 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain BST2 PF16716.5 gi|219853028|ref|YP_002467460.1| - 8.8 7.0 15.4 21 5.8 15.4 1.6 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 HATPase_c PF02518.26 gi|219853029|ref|YP_002467461.1| - 2e-22 79.8 0.0 3.6e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|219853029|ref|YP_002467461.1| - 6e-13 49.0 0.4 1.8e-08 34.6 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|219853029|ref|YP_002467461.1| - 8.6e-13 48.5 0.0 8.8e-07 29.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219853029|ref|YP_002467461.1| - 1.2e-11 44.7 0.0 1.2e-08 34.9 0.0 2.6 2 1 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|219853029|ref|YP_002467461.1| - 8.7e-11 41.7 4.2 1.5e-10 41.0 0.1 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|219853029|ref|YP_002467461.1| - 4.3e-09 36.2 0.0 6.3e-08 32.5 0.0 2.9 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|219853029|ref|YP_002467461.1| - 0.0049 17.1 0.0 0.029 14.7 0.0 2.4 2 1 0 2 2 2 1 PAS fold PAS_7 PF12860.7 gi|219853029|ref|YP_002467461.1| - 0.005 17.0 1.4 0.14 12.3 0.1 3.5 3 1 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 gi|219853029|ref|YP_002467461.1| - 0.0068 16.3 0.0 0.019 14.9 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|219853029|ref|YP_002467461.1| - 0.096 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219853030|ref|YP_002467462.1| - 2.9e-41 139.9 3.3 1.1e-14 54.6 0.0 4.8 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219853030|ref|YP_002467462.1| - 2.2e-38 130.7 0.1 2.8e-15 56.3 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|219853030|ref|YP_002467462.1| - 5.5e-32 110.3 0.6 6.2e-15 55.4 0.1 5.3 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|219853030|ref|YP_002467462.1| - 3.5e-29 100.3 4.4 2.6e-07 30.5 0.0 6.0 6 0 0 6 6 6 4 PAS domain GAF_2 PF13185.6 gi|219853030|ref|YP_002467462.1| - 6.3e-22 78.4 0.1 1.5e-21 77.1 0.1 1.7 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|219853030|ref|YP_002467462.1| - 8.3e-21 74.3 1.7 3e-20 72.5 0.0 2.7 4 0 0 4 4 3 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219853030|ref|YP_002467462.1| - 4.9e-13 49.6 0.1 1.6e-12 47.9 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|219853030|ref|YP_002467462.1| - 1.8e-11 44.2 0.2 7e-06 26.3 0.0 4.2 4 0 0 4 4 3 3 PAS fold HisKA_4TM PF16926.5 gi|219853030|ref|YP_002467462.1| - 0.0036 16.9 0.2 0.0066 16.0 0.2 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|219853030|ref|YP_002467462.1| - 0.0052 16.8 0.0 0.019 15.0 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain OKR_DC_1_N PF03709.15 gi|219853030|ref|YP_002467462.1| - 0.015 15.5 0.0 0.071 13.4 0.0 2.1 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF1241 PF06840.11 gi|219853030|ref|YP_002467462.1| - 0.076 12.7 0.0 0.24 11.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) HTH_46 PF15977.5 gi|219853030|ref|YP_002467462.1| - 0.11 12.5 0.0 33 4.6 0.0 2.8 3 0 0 3 3 2 0 Winged helix-turn-helix DNA binding PEP-utilisers_N PF05524.13 gi|219853030|ref|YP_002467462.1| - 0.13 12.4 4.3 6.9 6.9 0.0 4.1 5 0 0 5 5 4 0 PEP-utilising enzyme, N-terminal SPOB_a PF14689.6 gi|219853030|ref|YP_002467462.1| - 0.14 11.9 0.2 0.42 10.4 0.2 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_8 PF13188.7 gi|219853031|ref|YP_002467463.1| - 8.4e-32 108.6 0.2 1.6e-07 31.2 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|219853031|ref|YP_002467463.1| - 3.4e-31 107.6 0.0 2.6e-07 30.6 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|219853031|ref|YP_002467463.1| - 1e-30 106.1 1.4 2.8e-08 34.0 0.0 4.6 4 0 0 4 4 4 4 PAS domain GAF_2 PF13185.6 gi|219853031|ref|YP_002467463.1| - 3.1e-20 72.9 0.0 5.9e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|219853031|ref|YP_002467463.1| - 3.6e-20 72.2 0.1 1.2e-19 70.6 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 gi|219853031|ref|YP_002467463.1| - 1.8e-15 57.2 0.0 0.0074 16.5 0.0 4.8 4 0 0 4 4 4 3 PAS fold UPF0728 PF15092.6 gi|219853031|ref|YP_002467463.1| - 0.0015 18.3 0.3 38 4.2 0.0 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0728 NifZ PF04319.13 gi|219853031|ref|YP_002467463.1| - 0.0096 15.7 0.0 49 3.8 0.0 3.6 3 0 0 3 3 3 0 NifZ domain Pox_polyA_pol PF03296.13 gi|219853031|ref|YP_002467463.1| - 0.033 14.1 2.4 14 5.6 0.0 3.7 4 0 0 4 4 4 0 Poxvirus poly(A) polymerase nucleotidyltransferase domain AI-2E_transport PF01594.16 gi|219853032|ref|YP_002467464.1| - 6.3e-31 107.7 48.9 7.6e-31 107.5 48.9 1.1 1 0 0 1 1 1 1 AI-2E family transporter FUSC_2 PF13515.6 gi|219853033|ref|YP_002467465.1| - 1.3e-17 64.1 14.6 1.3e-17 64.1 14.6 2.7 2 1 1 3 3 3 1 Fusaric acid resistance protein-like FUSC PF04632.12 gi|219853033|ref|YP_002467465.1| - 0.83 8.1 36.0 0.35 9.4 15.7 2.4 2 0 0 2 2 2 0 Fusaric acid resistance protein family ABC_tran PF00005.27 gi|219853034|ref|YP_002467466.1| - 1.1e-31 110.1 0.0 2.6e-31 108.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|219853034|ref|YP_002467466.1| - 3.9e-11 43.3 0.8 9.6e-07 28.9 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219853034|ref|YP_002467466.1| - 1.2e-06 29.1 0.0 1.6e-05 25.5 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|219853034|ref|YP_002467466.1| - 2.6e-05 24.8 0.3 4.7e-05 24.0 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|219853034|ref|YP_002467466.1| - 0.0052 16.6 0.0 0.54 9.9 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|219853034|ref|YP_002467466.1| - 0.0083 15.8 0.1 0.02 14.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|219853034|ref|YP_002467466.1| - 0.0097 15.5 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|219853034|ref|YP_002467466.1| - 0.072 12.4 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|219853034|ref|YP_002467466.1| - 0.073 13.3 0.6 0.4 11.0 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|219853034|ref|YP_002467466.1| - 0.081 12.6 0.1 0.15 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|219853034|ref|YP_002467466.1| - 0.14 12.4 0.0 0.73 10.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|219853034|ref|YP_002467466.1| - 0.14 12.6 0.8 0.81 10.1 0.6 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane PF01061.24 gi|219853035|ref|YP_002467467.1| - 6.5e-21 74.7 21.8 6.5e-21 74.7 21.8 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219853035|ref|YP_002467467.1| - 2.2e-11 43.5 17.7 2.2e-11 43.5 17.7 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|219853035|ref|YP_002467467.1| - 0.00013 21.3 13.3 0.00013 21.3 13.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|219853035|ref|YP_002467467.1| - 0.018 14.5 12.1 0.032 13.7 12.1 1.6 1 1 0 1 1 1 0 CcmB protein TMEM125 PF15109.6 gi|219853036|ref|YP_002467468.1| - 0.0016 18.8 0.9 0.88 9.9 0.9 2.9 1 1 0 1 1 1 1 TMEM125 protein family DUF1697 PF08002.11 gi|219853037|ref|YP_002467469.1| - 3.3e-37 128.0 0.0 4e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1697) HxlR PF01638.17 gi|219853038|ref|YP_002467470.1| - 2.6e-30 104.1 0.1 3.1e-30 103.9 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|219853038|ref|YP_002467470.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|219853038|ref|YP_002467470.1| - 0.12 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Nitroreductase PF00881.24 gi|219853039|ref|YP_002467471.1| - 3.1e-26 92.4 0.0 4.3e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4_6 PF12837.7 gi|219853039|ref|YP_002467471.1| - 5.1e-11 42.2 12.0 2.8e-06 27.1 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|219853039|ref|YP_002467471.1| - 3.8e-10 39.1 13.7 4.1e-07 29.5 4.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219853039|ref|YP_002467471.1| - 4.4e-09 36.4 8.8 7.2e-09 35.7 8.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219853039|ref|YP_002467471.1| - 2.6e-08 34.3 31.2 8.5e-06 26.3 12.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219853039|ref|YP_002467471.1| - 5.3e-07 29.7 11.2 5.9e-06 26.3 12.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219853039|ref|YP_002467471.1| - 1.3e-06 29.2 5.7 0.013 16.4 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|219853039|ref|YP_002467471.1| - 7.3e-06 25.8 12.5 0.00019 21.3 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain TM1586_NiRdase PF14512.6 gi|219853039|ref|YP_002467471.1| - 1.7e-05 24.5 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 2 Putative TM nitroreductase Fer4_17 PF13534.6 gi|219853039|ref|YP_002467471.1| - 0.00024 21.6 12.3 0.008 16.7 12.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219853039|ref|YP_002467471.1| - 0.00091 19.6 14.3 0.091 13.3 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219853039|ref|YP_002467471.1| - 0.0012 18.9 13.1 0.033 14.3 3.4 2.3 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219853039|ref|YP_002467471.1| - 0.0089 16.5 13.6 0.26 11.8 13.6 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Phage_cap_E PF03864.15 gi|219853039|ref|YP_002467471.1| - 0.015 14.5 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 Phage major capsid protein E ETF_QO PF05187.13 gi|219853039|ref|YP_002467471.1| - 0.035 14.2 2.3 0.07 13.3 2.3 1.5 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S SAM_4 PF18017.1 gi|219853039|ref|YP_002467471.1| - 0.038 13.9 0.0 0.087 12.8 0.0 1.6 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) Fer4_22 PF17179.4 gi|219853039|ref|YP_002467471.1| - 0.3 12.0 8.7 2.4 9.1 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain zinc_ribbon_5 PF13719.6 gi|219853039|ref|YP_002467471.1| - 0.51 10.1 0.1 0.51 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_3 PF12798.7 gi|219853039|ref|YP_002467471.1| - 2.5 9.2 17.0 1.5 9.9 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219853039|ref|YP_002467471.1| - 3 8.1 11.0 2.7 8.2 2.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219853039|ref|YP_002467471.1| - 7.7 7.1 14.2 0.31 11.6 4.0 2.3 1 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CMD PF02627.20 gi|219853040|ref|YP_002467472.1| - 9.1e-33 112.2 0.6 6.3e-17 61.4 0.1 2.2 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family TIM21 PF08294.11 gi|219853040|ref|YP_002467472.1| - 0.023 14.6 0.0 0.091 12.6 0.0 1.9 2 1 1 3 3 3 0 TIM21 CMS1 PF14617.6 gi|219853040|ref|YP_002467472.1| - 0.19 11.1 0.0 5.7 6.2 0.0 2.2 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit Oxidored_FMN PF00724.20 gi|219853041|ref|YP_002467473.1| - 5.2e-50 170.6 0.0 1.1e-33 116.9 0.0 2.0 1 1 1 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family F420_ligase PF01996.16 gi|219853041|ref|YP_002467473.1| - 0.0028 17.0 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase AIRC PF00731.20 gi|219853041|ref|YP_002467473.1| - 0.087 12.4 0.1 12 5.4 0.0 2.4 2 0 0 2 2 2 0 AIR carboxylase FMN_red PF03358.15 gi|219853042|ref|YP_002467474.1| - 9e-24 84.0 0.0 1e-23 83.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219853042|ref|YP_002467474.1| - 3.8e-14 52.9 0.0 4.3e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|219853042|ref|YP_002467474.1| - 0.0076 16.5 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin domain Nitroreductase PF00881.24 gi|219853043|ref|YP_002467475.1| - 6.9e-37 127.1 0.0 9.3e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|219853043|ref|YP_002467475.1| - 8.9e-17 61.4 0.5 2.3e-06 27.3 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase PAS_4 PF08448.10 gi|219853044|ref|YP_002467476.1| - 3.7e-79 262.1 4.0 2.7e-13 50.1 0.0 9.5 9 1 0 9 9 9 8 PAS fold PAS_9 PF13426.7 gi|219853044|ref|YP_002467476.1| - 6e-76 251.4 0.8 1.6e-14 54.0 0.0 8.7 8 0 0 8 8 8 8 PAS domain PAS PF00989.25 gi|219853044|ref|YP_002467476.1| - 1.4e-63 211.9 0.6 7.1e-11 42.1 0.0 9.6 9 1 0 9 9 9 8 PAS fold PAS_3 PF08447.12 gi|219853044|ref|YP_002467476.1| - 3e-50 168.4 3.0 3.5e-13 49.7 0.0 8.6 8 1 0 8 8 8 7 PAS fold PAS_8 PF13188.7 gi|219853044|ref|YP_002467476.1| - 1.4e-43 146.3 0.0 5.8e-08 32.6 0.0 8.8 8 0 0 8 8 8 8 PAS domain Response_reg PF00072.24 gi|219853044|ref|YP_002467476.1| - 5.6e-19 68.4 0.0 4.4e-18 65.5 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|219853044|ref|YP_002467476.1| - 1.3e-09 38.5 0.5 6.4e-09 36.3 0.2 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|219853044|ref|YP_002467476.1| - 1.1e-05 25.6 1.8 0.1 12.7 0.0 6.8 8 1 2 10 10 10 1 PAS fold PAS_10 PF13596.6 gi|219853044|ref|YP_002467476.1| - 0.054 14.1 1.7 13 6.4 0.1 4.1 3 1 0 3 3 3 0 PAS domain SHE3 PF17078.5 gi|219853044|ref|YP_002467476.1| - 0.36 10.5 8.5 0.22 11.2 3.1 3.2 3 0 0 3 3 3 0 SWI5-dependent HO expression protein 3 IclR PF01614.18 gi|219853044|ref|YP_002467476.1| - 0.53 10.1 1.8 54 3.6 1.6 3.2 3 0 0 3 3 3 0 Bacterial transcriptional regulator DUF3566 PF12089.8 gi|219853045|ref|YP_002467477.1| - 0.68 10.3 11.4 3.8 7.9 8.4 2.2 1 1 1 2 2 2 0 Transmembrane domain of unknown function (DUF3566) Yip1 PF04893.17 gi|219853045|ref|YP_002467477.1| - 7.4 6.3 17.7 13 5.5 17.7 1.4 1 1 0 1 1 1 0 Yip1 domain Flavin_Reduct PF01613.18 gi|219853046|ref|YP_002467478.1| - 4.3e-24 85.3 0.0 5.2e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF169 PF02596.15 gi|219853047|ref|YP_002467479.1| - 3.2e-49 167.6 0.2 3.8e-49 167.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 FMN_red PF03358.15 gi|219853048|ref|YP_002467480.1| - 1.6e-26 92.9 0.0 1.9e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|219853048|ref|YP_002467480.1| - 6.8e-13 48.8 0.0 8.2e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_4 PF12800.7 gi|219853048|ref|YP_002467480.1| - 0.05 14.1 5.5 0.11 13.0 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain TrmO PF01980.16 gi|219853049|ref|YP_002467481.1| - 3.2e-36 124.1 0.0 4e-36 123.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Putative_PNPOx PF01243.20 gi|219853050|ref|YP_002467482.1| - 9e-09 35.4 0.0 1.2e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Binary_toxB_2 PF17475.2 gi|219853050|ref|YP_002467482.1| - 0.023 14.4 0.0 0.027 14.2 0.0 1.1 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA domain 2 KdpD PF02702.17 gi|219853051|ref|YP_002467483.1| - 6.5e-86 287.1 0.2 2.1e-85 285.5 0.1 1.7 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 gi|219853051|ref|YP_002467483.1| - 5.4e-22 77.6 11.2 1.2e-21 76.5 11.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) Usp PF00582.26 gi|219853051|ref|YP_002467483.1| - 0.00031 21.3 0.8 0.0021 18.6 0.4 2.5 2 1 0 2 2 2 1 Universal stress protein family MNHE PF01899.16 gi|219853051|ref|YP_002467483.1| - 0.088 12.6 3.5 0.25 11.1 3.5 1.8 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit KdpC PF02669.15 gi|219853052|ref|YP_002467484.1| - 5.5e-56 189.3 0.1 6.6e-56 189.0 0.1 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain DoxX PF07681.12 gi|219853052|ref|YP_002467484.1| - 0.44 11.2 4.6 1.3 9.7 4.6 1.7 1 0 0 1 1 1 0 DoxX OAR PF03826.17 gi|219853052|ref|YP_002467484.1| - 1.1 9.1 0.0 1.1 9.1 0.0 2.6 3 0 0 3 3 3 0 OAR domain E1-E2_ATPase PF00122.20 gi|219853053|ref|YP_002467485.1| - 1.5e-31 109.3 1.9 1.5e-31 109.3 1.9 2.4 2 0 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.26 gi|219853053|ref|YP_002467485.1| - 1.6e-30 107.0 1.9 2.7e-30 106.2 1.9 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|219853053|ref|YP_002467485.1| - 5.9e-05 22.9 0.3 0.00012 21.9 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|219853053|ref|YP_002467485.1| - 0.0024 18.3 0.1 0.0096 16.3 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase KdpA PF03814.15 gi|219853054|ref|YP_002467486.1| - 3.2e-226 751.8 30.6 3.8e-226 751.5 30.6 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit ADP_ribosyl_GH PF03747.14 gi|219853056|ref|YP_002467488.1| - 4e-71 240.1 0.2 4.7e-71 239.9 0.2 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DDE_Tnp_1 PF01609.21 gi|219853059|ref|YP_002467491.1| - 8.5e-19 68.0 1.5 1.5e-18 67.3 1.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|219853059|ref|YP_002467491.1| - 0.00043 20.6 0.3 0.0011 19.3 0.3 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|219853059|ref|YP_002467491.1| - 0.0022 18.0 0.1 0.0049 16.9 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF3089 PF11288.8 gi|219853059|ref|YP_002467491.1| - 0.02 14.5 0.6 4.7 6.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3089) UspB PF10625.9 gi|219853059|ref|YP_002467491.1| - 0.86 9.6 4.7 11 6.1 0.1 2.7 3 0 0 3 3 3 0 Universal stress protein B (UspB) zf-CDGSH PF09360.10 gi|219853061|ref|YP_002467493.1| - 6.2e-15 55.1 0.0 8.5e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type HxlR PF01638.17 gi|219853062|ref|YP_002467494.1| - 2.3e-27 94.6 0.0 2.8e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|219853062|ref|YP_002467494.1| - 0.00027 20.8 0.0 0.00039 20.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|219853062|ref|YP_002467494.1| - 0.00075 19.6 0.0 0.001 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|219853062|ref|YP_002467494.1| - 0.056 13.5 0.0 0.066 13.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_20 PF12840.7 gi|219853062|ref|YP_002467494.1| - 0.073 13.1 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|219853062|ref|YP_002467494.1| - 0.078 12.9 0.2 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|219853062|ref|YP_002467494.1| - 0.11 12.5 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|219853062|ref|YP_002467494.1| - 0.14 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.17 gi|219853063|ref|YP_002467495.1| - 7.9e-27 92.9 0.0 9.1e-27 92.8 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|219853063|ref|YP_002467495.1| - 0.0012 18.9 0.0 0.0017 18.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|219853063|ref|YP_002467495.1| - 0.0025 17.7 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|219853063|ref|YP_002467495.1| - 0.0038 17.1 0.0 0.0054 16.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|219853063|ref|YP_002467495.1| - 0.032 14.1 0.1 0.048 13.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|219853063|ref|YP_002467495.1| - 0.065 13.2 0.0 0.087 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.7 gi|219853063|ref|YP_002467495.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2148 PF09918.9 gi|219853064|ref|YP_002467496.1| - 2.2e-31 107.7 1.3 4.5e-31 106.7 1.3 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|219853064|ref|YP_002467496.1| - 9.4e-06 25.2 4.5 2.2e-05 24.0 4.5 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster YdjM PF04307.14 gi|219853067|ref|YP_002467499.1| - 1.1e-12 47.6 16.2 2.1e-12 46.7 16.2 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Rhv PF00073.20 gi|219853067|ref|YP_002467499.1| - 0.012 15.2 0.2 0.68 9.5 0.0 2.1 2 0 0 2 2 2 0 picornavirus capsid protein Tautomerase PF01361.21 gi|219853068|ref|YP_002467500.1| - 3e-17 62.3 0.1 3.6e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|219853068|ref|YP_002467500.1| - 8e-08 32.6 0.0 9.1e-08 32.4 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Tautomerase_2 PF14552.6 gi|219853068|ref|YP_002467500.1| - 6.3e-05 23.0 0.0 7.1e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme MIF PF01187.18 gi|219853068|ref|YP_002467500.1| - 0.16 12.3 0.0 0.19 12.0 0.0 1.1 1 0 0 1 1 1 0 Macrophage migration inhibitory factor (MIF) Methyltransf_25 PF13649.6 gi|219853069|ref|YP_002467501.1| - 1.6e-15 57.6 0.0 1.2e-14 54.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|219853069|ref|YP_002467501.1| - 1.3e-11 45.0 0.0 3.1e-11 43.7 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|219853069|ref|YP_002467501.1| - 1.8e-10 40.8 0.0 3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|219853069|ref|YP_002467501.1| - 6.6e-10 39.6 0.0 1.4e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|219853069|ref|YP_002467501.1| - 6e-08 32.4 0.0 9.3e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|219853069|ref|YP_002467501.1| - 4.6e-07 29.8 0.0 8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|219853069|ref|YP_002467501.1| - 6.7e-07 28.9 0.0 9.7e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|219853069|ref|YP_002467501.1| - 2.4e-05 23.8 0.0 3.4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|219853069|ref|YP_002467501.1| - 0.00037 19.9 0.0 0.00057 19.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|219853069|ref|YP_002467501.1| - 0.00055 19.6 0.0 0.00078 19.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 gi|219853069|ref|YP_002467501.1| - 0.0015 18.0 0.0 0.003 17.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|219853069|ref|YP_002467501.1| - 0.0021 18.0 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|219853069|ref|YP_002467501.1| - 0.007 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_32 PF13679.6 gi|219853069|ref|YP_002467501.1| - 0.014 15.4 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|219853069|ref|YP_002467501.1| - 0.035 13.2 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_15 PF09445.10 gi|219853069|ref|YP_002467501.1| - 0.042 13.4 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 gi|219853069|ref|YP_002467501.1| - 0.053 12.6 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MoCF_biosynth PF00994.24 gi|219853070|ref|YP_002467502.1| - 5.2e-28 97.5 0.0 9.5e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_N PF03453.17 gi|219853070|ref|YP_002467502.1| - 8.8e-28 97.0 0.0 1.5e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) HTH_17 PF12728.7 gi|219853071|ref|YP_002467503.1| - 4.1e-13 49.3 0.5 5.7e-13 48.8 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain OB_aCoA_assoc PF01796.17 gi|219853072|ref|YP_002467504.1| - 2.5e-18 65.8 0.0 3.5e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|219853072|ref|YP_002467504.1| - 1.3e-10 41.0 5.3 2.3e-10 40.1 5.3 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 gi|219853072|ref|YP_002467504.1| - 0.25 11.2 0.0 0.29 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Thiolase_N PF00108.23 gi|219853073|ref|YP_002467505.1| - 1.6e-29 103.1 0.0 2.4e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|219853073|ref|YP_002467505.1| - 9e-12 44.7 0.6 2.2e-11 43.5 0.6 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|219853073|ref|YP_002467505.1| - 4.5e-06 26.4 7.6 1.6e-05 24.6 2.4 3.2 2 1 2 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|219853074|ref|YP_002467506.1| - 1.5e-10 41.1 0.0 3.1e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.17 gi|219853074|ref|YP_002467506.1| - 2.1e-07 31.0 0.2 2.9e-07 30.5 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|219853074|ref|YP_002467506.1| - 5.2e-05 23.0 0.1 0.024 14.3 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|219853074|ref|YP_002467506.1| - 0.045 13.1 0.4 0.068 12.5 0.4 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain HTH_35 PF13693.6 gi|219853074|ref|YP_002467506.1| - 0.16 12.0 0.0 16 5.6 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ACP_syn_III PF08545.10 gi|219853074|ref|YP_002467506.1| - 1.3 9.0 5.4 0.2 11.6 1.0 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.22 gi|219853075|ref|YP_002467507.1| - 4.1e-07 30.0 0.0 9.9e-07 28.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|219853075|ref|YP_002467507.1| - 5.4e-05 23.5 0.0 0.0001 22.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|219853075|ref|YP_002467507.1| - 0.0043 17.1 0.0 0.0077 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain CTP-dep_RFKase PF01982.16 gi|219853076|ref|YP_002467508.1| - 4.6e-47 159.1 0.0 7.3e-47 158.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|219853076|ref|YP_002467508.1| - 0.0095 15.8 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|219853076|ref|YP_002467508.1| - 0.011 15.7 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|219853076|ref|YP_002467508.1| - 0.015 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|219853076|ref|YP_002467508.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|219853076|ref|YP_002467508.1| - 0.059 13.2 0.3 0.13 12.1 0.1 1.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|219853076|ref|YP_002467508.1| - 0.077 12.6 0.2 0.14 11.7 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|219853076|ref|YP_002467508.1| - 0.18 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|219853076|ref|YP_002467508.1| - 0.19 11.6 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DHBP_synthase PF00926.19 gi|219853077|ref|YP_002467509.1| - 2.2e-58 196.9 0.1 2.9e-58 196.6 0.1 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DHBP_synthase PF00926.19 gi|219853078|ref|YP_002467510.1| - 5.4e-58 195.7 0.0 6.3e-58 195.5 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase HEAT_2 PF13646.6 gi|219853079|ref|YP_002467511.1| - 2e-18 66.6 0.1 2.5e-18 66.2 0.1 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|219853079|ref|YP_002467511.1| - 8.2e-14 50.8 2.7 4.5e-06 26.8 0.1 2.6 2 1 1 3 3 3 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|219853079|ref|YP_002467511.1| - 1.2e-07 31.3 0.0 0.00035 20.6 0.0 2.4 2 0 0 2 2 2 2 HEAT repeat HEAT_EZ PF13513.6 gi|219853079|ref|YP_002467511.1| - 4.6e-07 30.2 0.0 0.0005 20.5 0.0 2.7 3 0 0 3 3 3 2 HEAT-like repeat Cnd1 PF12717.7 gi|219853079|ref|YP_002467511.1| - 0.033 14.2 0.0 0.094 12.7 0.0 1.7 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|219853079|ref|YP_002467511.1| - 0.12 12.5 0.0 8.2 6.6 0.0 2.3 1 1 1 2 2 2 0 Armadillo/beta-catenin-like repeat LysE PF01810.18 gi|219853080|ref|YP_002467512.1| - 7.9e-30 103.7 14.6 1e-29 103.4 14.6 1.1 1 0 0 1 1 1 1 LysE type translocator Metallophos_2 PF12850.7 gi|219853081|ref|YP_002467513.1| - 3.2e-08 34.0 0.0 5.8e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|219853081|ref|YP_002467513.1| - 0.0034 17.9 0.0 0.0076 16.8 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PrgH PF09480.10 gi|219853082|ref|YP_002467514.1| - 0.0019 17.6 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Type III secretion system protein PrgH-EprH (PrgH) Glyoxalase_2 PF12681.7 gi|219853083|ref|YP_002467515.1| - 1.1e-21 77.0 0.0 1.3e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|219853083|ref|YP_002467515.1| - 0.0014 18.9 0.1 0.0028 17.9 0.1 1.6 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sigma70_r1_1 PF03979.14 gi|219853083|ref|YP_002467515.1| - 0.13 12.3 0.4 0.25 11.4 0.1 1.5 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 Acetyltransf_9 PF13527.7 gi|219853084|ref|YP_002467516.1| - 1.8e-11 44.2 0.0 2.4e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|219853084|ref|YP_002467516.1| - 1.1e-10 41.8 0.0 1.6e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|219853084|ref|YP_002467516.1| - 6.6e-08 32.9 0.0 1.1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|219853084|ref|YP_002467516.1| - 0.00056 19.9 0.0 0.00086 19.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 gi|219853084|ref|YP_002467516.1| - 0.068 12.8 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family Acetyltransf_CG PF14542.6 gi|219853084|ref|YP_002467516.1| - 0.078 13.1 0.1 0.19 11.9 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Pcc1 PF09341.10 gi|219853085|ref|YP_002467517.1| - 7e-10 38.9 0.1 8.6e-10 38.6 0.1 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|219853087|ref|YP_002467519.1| - 5.5e-12 45.1 5.4 7e-12 44.8 5.4 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|219853087|ref|YP_002467519.1| - 0.00021 20.8 1.8 0.037 13.6 0.2 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|219853087|ref|YP_002467519.1| - 0.00029 20.1 1.9 0.0021 17.4 2.1 1.9 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|219853087|ref|YP_002467519.1| - 0.0011 18.9 0.4 0.0011 18.9 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbon_6 PF10005.9 gi|219853087|ref|YP_002467519.1| - 0.0019 18.8 0.1 0.0019 18.8 0.1 1.0 1 0 0 1 1 1 1 zinc-ribbon domain TFIIS_C PF01096.18 gi|219853087|ref|YP_002467519.1| - 0.0035 17.2 3.2 0.089 12.7 0.7 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|219853087|ref|YP_002467519.1| - 0.0042 16.7 1.0 0.0062 16.2 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|219853087|ref|YP_002467519.1| - 0.0043 17.1 3.4 0.0095 16.0 3.4 1.5 1 1 0 1 1 1 1 Zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|219853087|ref|YP_002467519.1| - 0.0046 16.8 2.3 0.63 10.0 0.3 2.1 1 1 1 2 2 2 2 Cysteine-rich CPXCG zinc-ribbons_6 PF07191.12 gi|219853087|ref|YP_002467519.1| - 0.0062 16.5 0.2 0.0063 16.5 0.2 1.1 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|219853087|ref|YP_002467519.1| - 0.01 15.8 4.6 0.48 10.4 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.15 gi|219853087|ref|YP_002467519.1| - 0.011 15.8 2.4 0.51 10.4 0.2 2.1 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_10 PF10058.9 gi|219853087|ref|YP_002467519.1| - 0.051 13.3 2.1 4 7.3 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein YacG PF03884.14 gi|219853087|ref|YP_002467519.1| - 0.054 13.2 1.9 0.077 12.7 1.9 1.3 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG DUF2197 PF09963.9 gi|219853087|ref|YP_002467519.1| - 0.072 13.4 2.7 0.48 10.7 1.6 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Lar_restr_allev PF14354.6 gi|219853087|ref|YP_002467519.1| - 0.072 13.5 2.6 0.14 12.6 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar UPF0547 PF10571.9 gi|219853087|ref|YP_002467519.1| - 0.082 13.0 5.5 0.19 11.8 5.5 1.6 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Elf1 PF05129.13 gi|219853087|ref|YP_002467519.1| - 0.13 12.3 3.0 2.1 8.5 0.2 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Desulfoferrod_N PF06397.12 gi|219853087|ref|YP_002467519.1| - 0.16 11.6 2.9 6.1 6.5 0.4 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_4 PF13717.6 gi|219853087|ref|YP_002467519.1| - 0.16 11.9 7.7 0.38 10.7 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|219853087|ref|YP_002467519.1| - 0.21 11.9 3.6 1.9 8.8 0.1 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|219853087|ref|YP_002467519.1| - 0.24 10.9 3.0 1.7 8.2 0.3 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding zf-LSD1 PF06943.12 gi|219853087|ref|YP_002467519.1| - 0.42 10.5 5.3 1.2 9.1 0.3 2.1 2 0 0 2 2 2 0 LSD1 zinc finger Ribosomal_L37ae PF01780.19 gi|219853088|ref|YP_002467520.1| - 1.7e-30 104.9 2.7 2.1e-30 104.7 2.7 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family IBR PF01485.21 gi|219853088|ref|YP_002467520.1| - 0.0064 16.7 0.3 0.0091 16.2 0.3 1.3 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain UPF0515 PF15135.6 gi|219853088|ref|YP_002467520.1| - 0.055 12.8 1.1 0.059 12.7 1.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 OrfB_Zn_ribbon PF07282.11 gi|219853088|ref|YP_002467520.1| - 0.19 11.6 2.3 0.25 11.3 1.7 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-RanBP PF00641.18 gi|219853088|ref|YP_002467520.1| - 0.25 10.7 2.7 5.6 6.4 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others SBDS PF01172.18 gi|219853089|ref|YP_002467521.1| - 2.7e-21 75.4 0.0 4.2e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|219853089|ref|YP_002467521.1| - 4.7e-21 75.0 0.0 6.9e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|219853090|ref|YP_002467522.1| - 2.9e-59 199.8 0.1 3.9e-59 199.4 0.1 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|219853090|ref|YP_002467522.1| - 2.9e-14 52.4 0.2 5.7e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|219853091|ref|YP_002467523.1| - 1e-13 51.4 0.0 1.6e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Ntox4 PF15541.6 gi|219853091|ref|YP_002467523.1| - 0.085 13.2 0.0 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial toxin 4 RNase_P_p30 PF01876.16 gi|219853092|ref|YP_002467524.1| - 1.3e-15 57.5 0.0 5.3e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 RNase P subunit p30 BtrH_N PF14399.6 gi|219853092|ref|YP_002467524.1| - 0.063 13.5 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal Ribosomal_L15e PF00827.17 gi|219853093|ref|YP_002467525.1| - 9.7e-80 266.8 7.9 1.1e-79 266.6 7.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 MoaC PF01967.21 gi|219853094|ref|YP_002467526.1| - 2.9e-47 160.2 3.8 3.2e-47 160.0 3.8 1.0 1 0 0 1 1 1 1 MoaC family Big_3_5 PF16640.5 gi|219853094|ref|YP_002467526.1| - 0.23 11.7 7.1 4.1 7.7 0.8 2.2 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Carb_kinase PF01256.17 gi|219853095|ref|YP_002467527.1| - 1.1e-42 146.2 0.2 1.8e-42 145.5 0.2 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|219853095|ref|YP_002467527.1| - 9.2e-26 90.7 0.1 1.6e-25 90.0 0.1 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|219853095|ref|YP_002467527.1| - 0.00037 20.0 0.1 0.00082 18.8 0.0 1.5 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family DHHA1 PF02272.19 gi|219853096|ref|YP_002467528.1| - 2.3e-12 47.5 0.0 1.1e-11 45.3 0.0 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|219853096|ref|YP_002467528.1| - 5.5e-05 23.3 0.1 9.6e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 DHH family DUF4258 PF14076.6 gi|219853096|ref|YP_002467528.1| - 0.13 12.6 0.0 12 6.3 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4258) TGT_C2 PF14810.6 gi|219853097|ref|YP_002467529.1| - 2.5e-31 107.6 0.1 4.2e-31 106.9 0.1 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|219853097|ref|YP_002467529.1| - 3.5e-16 58.9 1.0 5e-16 58.4 1.0 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|219853097|ref|YP_002467529.1| - 0.012 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain Tex_YqgF PF16921.5 gi|219853097|ref|YP_002467529.1| - 0.053 14.0 0.0 0.075 13.5 0.0 1.2 1 0 0 1 1 1 0 Tex protein YqgF-like domain NAC PF01849.18 gi|219853098|ref|YP_002467530.1| - 4.2e-15 55.5 2.0 6.4e-15 54.9 2.0 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.31 gi|219853098|ref|YP_002467530.1| - 0.091 12.7 0.3 0.091 12.7 0.3 1.7 2 0 0 2 2 2 0 UBA/TS-N domain Methyltransf_31 PF13847.6 gi|219853099|ref|YP_002467531.1| - 5.6e-09 36.0 0.0 7.3e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|219853099|ref|YP_002467531.1| - 2.5e-08 33.3 0.0 3.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|219853099|ref|YP_002467531.1| - 2.5e-07 30.7 0.0 4.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|219853099|ref|YP_002467531.1| - 1.9e-06 27.8 0.0 3.8e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|219853099|ref|YP_002467531.1| - 2.3e-06 28.2 0.0 3.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|219853099|ref|YP_002467531.1| - 3.6e-06 26.8 0.0 3.9e-05 23.5 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.14 gi|219853099|ref|YP_002467531.1| - 4.1e-06 26.5 0.2 2.7e-05 23.8 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|219853099|ref|YP_002467531.1| - 6.3e-05 23.6 0.0 0.00019 22.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|219853099|ref|YP_002467531.1| - 8e-05 22.2 0.0 0.00011 21.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) SAM_MT PF04445.13 gi|219853099|ref|YP_002467531.1| - 0.0043 16.5 0.0 0.006 16.0 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase TehB PF03848.14 gi|219853099|ref|YP_002467531.1| - 0.063 12.7 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_12 PF08242.12 gi|219853099|ref|YP_002467531.1| - 0.1 13.4 0.1 0.53 11.1 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|219853099|ref|YP_002467531.1| - 0.18 11.5 0.3 1.3 8.7 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF938) OTCace_N PF02729.21 gi|219853100|ref|YP_002467532.1| - 6.8e-47 159.2 0.1 1.4e-46 158.2 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|219853100|ref|YP_002467532.1| - 5.8e-27 94.7 0.0 7.7e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Phos_pyr_kin PF08543.12 gi|219853100|ref|YP_002467532.1| - 0.048 13.0 0.0 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase PyrI PF01948.18 gi|219853101|ref|YP_002467533.1| - 3.4e-31 107.3 0.2 4.3e-31 107.0 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|219853101|ref|YP_002467533.1| - 2.1e-13 49.9 1.3 2.1e-13 49.9 1.3 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain IreB PF06135.12 gi|219853101|ref|YP_002467533.1| - 0.018 15.2 0.1 8.2 6.7 0.1 2.2 2 0 0 2 2 2 0 IreB regulatory phosphoprotein PriA_CRR PF18319.1 gi|219853101|ref|YP_002467533.1| - 0.1 12.6 0.8 0.1 12.6 0.8 1.8 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain CTP_transf_like PF01467.26 gi|219853102|ref|YP_002467534.1| - 9.9e-14 51.7 0.0 1.1e-13 51.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|219853102|ref|YP_002467534.1| - 0.0059 16.5 0.0 0.0081 16.1 0.0 1.4 1 1 0 1 1 1 1 FAD synthetase Hexapep PF00132.24 gi|219853103|ref|YP_002467535.1| - 5.1e-18 64.0 24.7 9e-08 31.5 4.3 4.3 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|219853103|ref|YP_002467535.1| - 0.0033 17.2 19.3 0.0055 16.4 6.8 3.9 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|219853103|ref|YP_002467535.1| - 0.11 11.4 0.4 0.33 9.8 0.4 1.7 1 1 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|219853103|ref|YP_002467535.1| - 0.22 9.6 4.0 0.39 8.8 3.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) Pyr_redox_2 PF07992.14 gi|219853104|ref|YP_002467536.1| - 6.5e-19 68.3 0.0 3.1e-18 66.0 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|219853104|ref|YP_002467536.1| - 1.3e-12 47.0 15.1 8.2e-07 28.6 4.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219853104|ref|YP_002467536.1| - 7.5e-09 35.6 6.0 7.5e-09 35.6 6.0 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219853104|ref|YP_002467536.1| - 4.5e-08 32.8 20.9 9.1e-07 28.7 3.8 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219853104|ref|YP_002467536.1| - 2.5e-07 30.4 17.3 0.00015 21.7 3.8 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain NAD_binding_8 PF13450.6 gi|219853104|ref|YP_002467536.1| - 5.1e-07 29.8 0.0 1.1e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_10 PF13237.6 gi|219853104|ref|YP_002467536.1| - 7.3e-07 29.2 12.9 0.00013 22.0 0.4 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|219853104|ref|YP_002467536.1| - 2.5e-06 27.9 0.1 4.2e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|219853104|ref|YP_002467536.1| - 7.2e-06 25.6 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|219853104|ref|YP_002467536.1| - 1.1e-05 24.7 1.0 1.8e-05 24.1 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|219853104|ref|YP_002467536.1| - 2e-05 25.0 10.8 0.011 16.1 1.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain DAO PF01266.24 gi|219853104|ref|YP_002467536.1| - 2.7e-05 23.9 1.8 0.00019 21.2 0.7 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|219853104|ref|YP_002467536.1| - 8e-05 21.9 0.1 8e-05 21.9 0.1 1.5 2 0 0 2 2 1 1 Glucose inhibited division protein A Fer4_16 PF13484.6 gi|219853104|ref|YP_002467536.1| - 9.5e-05 23.3 10.2 0.06 14.3 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain HI0933_like PF03486.14 gi|219853104|ref|YP_002467536.1| - 0.00011 21.0 0.5 0.0002 20.2 0.4 1.4 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|219853104|ref|YP_002467536.1| - 0.00021 20.6 0.0 0.0005 19.4 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Fer4_7 PF12838.7 gi|219853104|ref|YP_002467536.1| - 0.00023 21.7 19.9 0.012 16.1 6.0 3.2 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219853104|ref|YP_002467536.1| - 0.0024 18.0 8.4 0.016 15.4 1.7 3.4 4 0 0 4 4 2 2 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|219853104|ref|YP_002467536.1| - 0.0052 16.8 0.5 0.02 14.9 0.1 2.1 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|219853104|ref|YP_002467536.1| - 0.0067 15.7 0.2 0.026 13.8 0.2 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_13 PF13370.6 gi|219853104|ref|YP_002467536.1| - 0.01 16.4 9.9 0.57 10.8 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|219853104|ref|YP_002467536.1| - 0.01 16.3 10.2 0.01 16.3 10.2 3.0 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219853104|ref|YP_002467536.1| - 0.011 16.5 5.4 1.3 9.8 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain 3HCDH_N PF02737.18 gi|219853104|ref|YP_002467536.1| - 0.013 15.4 0.2 0.022 14.7 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_4 PF12800.7 gi|219853104|ref|YP_002467536.1| - 0.02 15.4 12.7 0.033 14.7 2.7 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Lycopene_cycl PF05834.12 gi|219853104|ref|YP_002467536.1| - 0.066 12.3 0.4 0.11 11.5 0.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|219853104|ref|YP_002467536.1| - 0.11 11.8 0.7 9.2 5.4 0.3 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|219853104|ref|YP_002467536.1| - 0.15 11.4 4.1 0.048 13.0 1.5 1.7 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|219853104|ref|YP_002467536.1| - 0.16 11.2 0.3 0.25 10.5 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Fer4_22 PF17179.4 gi|219853104|ref|YP_002467536.1| - 0.26 12.2 0.2 0.26 12.2 0.2 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain IF-2B PF01008.17 gi|219853105|ref|YP_002467537.1| - 1.3e-71 241.1 0.0 1.5e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF116 PF01976.17 gi|219853106|ref|YP_002467538.1| - 8.8e-47 158.5 0.0 1e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 Bactofilin PF04519.13 gi|219853107|ref|YP_002467539.1| - 8.9e-08 32.3 3.0 0.00038 20.7 0.0 2.1 1 1 1 2 2 2 2 Polymer-forming cytoskeletal FapA PF03961.13 gi|219853107|ref|YP_002467539.1| - 0.027 13.1 0.5 0.027 13.1 0.5 1.6 2 0 0 2 2 2 0 Flagellar Assembly Protein A Hexapep PF00132.24 gi|219853107|ref|YP_002467539.1| - 0.072 12.8 7.9 2.8 7.8 0.1 4.5 3 2 2 5 5 5 0 Bacterial transferase hexapeptide (six repeats) UbiA PF01040.18 gi|219853108|ref|YP_002467540.1| - 1.4e-40 139.2 20.0 1.8e-40 138.8 20.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family TRM PF02005.16 gi|219853109|ref|YP_002467541.1| - 7.2e-90 301.9 0.0 8.1e-90 301.7 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Zn_ribbon_SprT PF17283.2 gi|219853109|ref|YP_002467541.1| - 0.021 14.7 2.3 0.076 12.9 2.3 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Cons_hypoth95 PF03602.15 gi|219853109|ref|YP_002467541.1| - 0.037 13.7 0.0 0.2 11.3 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical protein 95 MTS PF05175.14 gi|219853109|ref|YP_002467541.1| - 0.17 11.4 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Rubredoxin PF00301.20 gi|219853109|ref|YP_002467541.1| - 0.24 11.5 1.1 1.8 8.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|219853109|ref|YP_002467541.1| - 0.26 11.4 1.6 0.63 10.2 1.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain MMR_HSR1_Xtn PF16897.5 gi|219853110|ref|YP_002467542.1| - 5.2e-27 94.0 0.0 9.3e-27 93.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|219853110|ref|YP_002467542.1| - 1.2e-20 73.7 0.1 2.3e-20 72.8 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|219853110|ref|YP_002467542.1| - 5.9e-18 64.7 0.0 1.5e-17 63.4 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|219853110|ref|YP_002467542.1| - 4e-15 55.7 0.5 1e-12 47.9 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|219853110|ref|YP_002467542.1| - 2.4e-09 37.3 0.3 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|219853110|ref|YP_002467542.1| - 0.00019 20.9 0.1 0.014 14.8 0.1 2.3 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|219853110|ref|YP_002467542.1| - 0.00043 19.8 0.7 0.094 12.2 0.1 2.7 2 1 1 3 3 3 1 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|219853110|ref|YP_002467542.1| - 0.001 19.2 0.7 0.1 12.7 0.4 2.5 1 1 0 2 2 2 1 Dynamin family AIG1 PF04548.16 gi|219853110|ref|YP_002467542.1| - 0.0014 18.0 0.1 0.0025 17.2 0.1 1.4 1 0 0 1 1 1 1 AIG1 family MeaB PF03308.16 gi|219853110|ref|YP_002467542.1| - 0.012 14.6 2.4 0.015 14.3 0.2 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|219853110|ref|YP_002467542.1| - 0.017 14.7 2.4 0.83 9.2 0.3 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|219853110|ref|YP_002467542.1| - 0.025 14.1 1.8 1.6 8.2 0.0 3.3 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|219853110|ref|YP_002467542.1| - 0.083 13.1 0.5 0.16 12.2 0.5 1.4 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|219853110|ref|YP_002467542.1| - 0.16 12.2 0.1 0.3 11.3 0.1 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|219853110|ref|YP_002467542.1| - 0.22 11.9 1.1 0.3 11.4 0.2 1.6 2 0 0 2 2 1 0 AAA ATPase domain KTI12 PF08433.10 gi|219853110|ref|YP_002467542.1| - 0.25 10.7 0.1 0.42 10.0 0.1 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 zinc_ribbon_2 PF13240.6 gi|219853111|ref|YP_002467543.1| - 2.7e-09 36.4 17.6 4.8e-05 22.9 5.0 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|219853111|ref|YP_002467543.1| - 2.1e-06 27.6 7.0 5.6e-06 26.3 7.1 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|219853111|ref|YP_002467543.1| - 3.2e-06 27.8 11.1 0.00075 20.2 0.8 2.4 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|219853111|ref|YP_002467543.1| - 0.0052 16.2 11.8 0.074 12.5 2.5 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|219853111|ref|YP_002467543.1| - 0.11 12.4 8.0 2.2 8.2 1.4 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) NOB1_Zn_bind PF08772.11 gi|219853111|ref|YP_002467543.1| - 0.14 12.3 8.8 0.61 10.3 0.7 2.9 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC5 PF06221.13 gi|219853111|ref|YP_002467543.1| - 0.16 12.0 4.6 6.7 6.8 0.3 2.4 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Cytochrom_c3_2 PF14537.6 gi|219853111|ref|YP_002467543.1| - 0.48 10.9 10.7 2.4 8.7 10.7 2.1 1 1 0 1 1 1 0 Cytochrome c3 Cytochrom_NNT PF03264.14 gi|219853111|ref|YP_002467543.1| - 0.95 9.1 6.5 2.1 8.0 0.8 2.6 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region ADK_lid PF05191.14 gi|219853111|ref|YP_002467543.1| - 1 9.4 9.7 1 9.4 0.9 2.7 2 0 0 2 2 2 0 Adenylate kinase, active site lid C5HCH PF17982.1 gi|219853111|ref|YP_002467543.1| - 1.2 9.3 8.9 3.6 7.8 1.7 2.4 2 0 0 2 2 2 0 NSD Cys-His rich domain TackOD1 PF18551.1 gi|219853111|ref|YP_002467543.1| - 2.6 7.7 14.2 0.15 11.7 1.7 3.1 3 1 1 4 4 4 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|219853111|ref|YP_002467543.1| - 3 8.1 8.5 11 6.2 0.8 2.6 2 0 0 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|219853111|ref|YP_002467543.1| - 9.5 5.9 13.0 0.33 10.6 1.3 3.2 3 1 0 3 3 3 0 RecR protein Resolvase PF00239.21 gi|219853112|ref|YP_002467544.1| - 4e-27 95.1 0.0 5.2e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4_2 PF08281.12 gi|219853112|ref|YP_002467544.1| - 0.00097 18.8 0.0 0.0034 17.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|219853112|ref|YP_002467544.1| - 0.0036 17.1 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 gi|219853112|ref|YP_002467544.1| - 0.0051 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_7 PF02796.15 gi|219853112|ref|YP_002467544.1| - 0.027 14.5 0.0 0.39 10.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|219853112|ref|YP_002467544.1| - 0.028 14.0 0.0 0.065 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|219853112|ref|YP_002467544.1| - 0.046 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix MarR PF01047.22 gi|219853112|ref|YP_002467544.1| - 0.074 13.0 0.2 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF134 PF02001.16 gi|219853112|ref|YP_002467544.1| - 0.091 13.3 0.0 0.16 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_17 PF12728.7 gi|219853113|ref|YP_002467545.1| - 2.7e-11 43.5 0.1 3.3e-11 43.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|219853113|ref|YP_002467545.1| - 4.3e-06 26.4 0.6 1e-05 25.2 0.1 1.8 2 1 0 2 2 2 1 Homeodomain-like domain MerR_1 PF13411.6 gi|219853113|ref|YP_002467545.1| - 0.00041 20.4 0.5 0.00053 20.0 0.5 1.2 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_29 PF13551.6 gi|219853113|ref|YP_002467545.1| - 0.00049 20.1 0.1 0.00072 19.5 0.1 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|219853113|ref|YP_002467545.1| - 0.0014 18.6 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|219853113|ref|YP_002467545.1| - 0.0023 17.8 0.1 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|219853113|ref|YP_002467545.1| - 0.003 17.2 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MerR PF00376.23 gi|219853113|ref|YP_002467545.1| - 0.0041 16.9 0.1 0.0067 16.2 0.1 1.4 1 0 0 1 1 1 1 MerR family regulatory protein Exc PF07825.11 gi|219853113|ref|YP_002467545.1| - 0.0043 17.0 0.0 0.005 16.8 0.0 1.2 1 0 0 1 1 1 1 Excisionase-like protein AbiEi_4 PF13338.6 gi|219853113|ref|YP_002467545.1| - 0.0051 16.9 0.0 0.0085 16.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_38 PF13936.6 gi|219853113|ref|YP_002467545.1| - 0.0066 16.2 0.0 0.0094 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|219853113|ref|YP_002467545.1| - 0.013 15.6 0.5 0.015 15.4 0.5 1.1 1 0 0 1 1 1 0 Transposase DUF1323 PF07037.11 gi|219853113|ref|YP_002467545.1| - 0.016 15.6 0.3 0.019 15.3 0.3 1.3 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_28 PF13518.6 gi|219853113|ref|YP_002467545.1| - 0.017 15.2 0.2 0.031 14.4 0.1 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|219853113|ref|YP_002467545.1| - 0.027 14.3 0.5 0.056 13.3 0.2 1.6 1 1 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 gi|219853113|ref|YP_002467545.1| - 0.029 14.4 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_1_2 PF13022.6 gi|219853113|ref|YP_002467545.1| - 0.05 13.8 0.3 0.051 13.7 0.3 1.1 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_Tnp_ISL3 PF13542.6 gi|219853113|ref|YP_002467545.1| - 0.056 12.9 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 gi|219853113|ref|YP_002467545.1| - 0.063 13.7 0.1 0.069 13.6 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain D5_N PF08706.11 gi|219853114|ref|YP_002467546.1| - 9e-09 35.8 0.0 2e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 D5 N terminal like Pox_D5 PF03288.16 gi|219853114|ref|YP_002467546.1| - 7.1e-07 29.6 3.2 3.1e-06 27.6 0.2 2.7 2 0 0 2 2 2 1 Poxvirus D5 protein-like RFX_DNA_binding PF02257.15 gi|219853114|ref|YP_002467546.1| - 0.072 13.7 1.4 0.15 12.7 0.1 2.2 2 0 0 2 2 2 0 RFX DNA-binding domain Sex_peptide PF08138.11 gi|219853114|ref|YP_002467546.1| - 0.11 12.7 0.3 0.23 11.6 0.3 1.5 1 0 0 1 1 1 0 Sex peptide (SP) family HEPN PF05168.14 gi|219853115|ref|YP_002467547.1| - 0.00075 19.6 1.2 0.0021 18.2 0.9 1.8 2 0 0 2 2 2 1 HEPN domain DUF4145 PF13643.6 gi|219853115|ref|YP_002467547.1| - 0.0034 17.5 0.0 0.0059 16.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) B3R PF17057.5 gi|219853115|ref|YP_002467547.1| - 0.11 12.7 0.1 0.23 11.7 0.1 1.5 1 0 0 1 1 1 0 Poxviridae B3 protein Phage_integrase PF00589.22 gi|219853116|ref|YP_002467548.1| - 0.00034 20.4 0.0 0.0011 18.8 0.0 1.9 2 1 0 2 2 2 1 Phage integrase family Phage_integr_3 PF16795.5 gi|219853116|ref|YP_002467548.1| - 0.0029 17.5 0.8 0.0054 16.7 0.8 1.4 1 0 0 1 1 1 1 Archaeal phage integrase PAS_4 PF08448.10 gi|219853117|ref|YP_002467549.1| - 1.2e-61 205.8 0.0 5e-15 55.7 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|219853117|ref|YP_002467549.1| - 5.7e-58 193.8 0.0 1.4e-15 57.2 0.0 4.8 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|219853117|ref|YP_002467549.1| - 7.5e-53 177.2 0.0 2.5e-15 56.6 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|219853117|ref|YP_002467549.1| - 3.4e-23 81.2 0.0 2e-07 30.9 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|219853117|ref|YP_002467549.1| - 2.7e-19 69.3 0.0 1.1e-05 25.6 0.0 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|219853117|ref|YP_002467549.1| - 2e-14 54.1 0.1 5.5e-14 52.6 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|219853117|ref|YP_002467549.1| - 2.8e-08 34.3 0.0 0.11 13.1 0.0 3.5 3 0 0 3 3 3 3 PAS domain SPOB_a PF14689.6 gi|219853117|ref|YP_002467549.1| - 0.001 18.7 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|219853117|ref|YP_002467549.1| - 0.012 15.2 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase DUF4118 PF13493.6 gi|219853117|ref|YP_002467549.1| - 0.014 15.2 11.0 0.021 14.6 11.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) HATPase_c_3 PF13589.6 gi|219853117|ref|YP_002467549.1| - 0.02 14.7 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEKHLA PF08670.11 gi|219853117|ref|YP_002467549.1| - 0.041 13.8 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 MEKHLA domain PAS_7 PF12860.7 gi|219853117|ref|YP_002467549.1| - 0.052 13.7 0.1 16 5.7 0.0 3.9 5 0 0 5 5 5 0 PAS fold PAS_5 PF07310.13 gi|219853117|ref|YP_002467549.1| - 0.098 12.4 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 PAS domain C_GCAxxG_C_C PF09719.10 gi|219853118|ref|YP_002467550.1| - 1.3e-31 109.4 0.3 1.5e-31 109.2 0.3 1.0 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) DJ-1_PfpI PF01965.24 gi|219853119|ref|YP_002467551.1| - 3.1e-52 176.7 0.0 3.5e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|219853119|ref|YP_002467551.1| - 0.0015 18.3 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|219853119|ref|YP_002467551.1| - 0.079 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|219853119|ref|YP_002467551.1| - 0.086 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 Lon_C PF05362.13 gi|219853120|ref|YP_002467552.1| - 2.1e-87 291.9 0.7 3.7e-87 291.2 0.7 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 gi|219853120|ref|YP_002467552.1| - 1.6e-22 80.4 0.0 1e-21 77.8 0.0 2.4 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) LON_substr_bdg PF02190.16 gi|219853120|ref|YP_002467552.1| - 6.3e-11 42.6 0.1 1.1e-10 41.8 0.1 1.4 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain ChlI PF13541.6 gi|219853120|ref|YP_002467552.1| - 2.1e-09 37.2 0.0 5.8e-09 35.8 0.0 1.8 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|219853120|ref|YP_002467552.1| - 2.5e-08 34.0 0.0 3.5e-07 30.3 0.0 2.6 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|219853120|ref|YP_002467552.1| - 7.6e-05 23.2 0.5 0.0018 18.6 0.2 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|219853120|ref|YP_002467552.1| - 0.00016 21.9 0.0 0.00078 19.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 gi|219853120|ref|YP_002467552.1| - 0.00044 20.8 2.9 0.34 11.5 0.1 3.6 3 1 0 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|219853120|ref|YP_002467552.1| - 0.00082 19.2 0.1 0.004 16.9 0.1 2.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|219853120|ref|YP_002467552.1| - 0.00084 19.6 0.1 0.036 14.4 0.0 2.8 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|219853120|ref|YP_002467552.1| - 0.0018 18.0 0.0 0.006 16.3 0.0 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein Viral_helicase1 PF01443.18 gi|219853120|ref|YP_002467552.1| - 0.0036 17.1 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|219853120|ref|YP_002467552.1| - 0.009 16.2 0.3 0.032 14.4 0.1 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|219853120|ref|YP_002467552.1| - 0.011 14.9 0.2 0.039 13.2 0.1 1.9 2 0 0 2 2 2 0 TIP49 P-loop domain Zeta_toxin PF06414.12 gi|219853120|ref|YP_002467552.1| - 0.015 14.6 0.3 0.052 12.8 0.1 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_3 PF07726.11 gi|219853120|ref|YP_002467552.1| - 0.017 15.0 0.0 0.071 13.0 0.0 2.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|219853120|ref|YP_002467552.1| - 0.035 14.0 0.0 0.079 12.9 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain DUF815 PF05673.13 gi|219853120|ref|YP_002467552.1| - 0.036 13.2 0.1 0.099 11.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Birna_VP4 PF01768.16 gi|219853120|ref|YP_002467552.1| - 0.046 13.5 0.1 0.12 12.2 0.1 1.7 1 0 0 1 1 1 0 Birnavirus VP4 protein TsaE PF02367.17 gi|219853120|ref|YP_002467552.1| - 0.053 13.5 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_PrkA PF08298.11 gi|219853120|ref|YP_002467552.1| - 0.062 12.2 0.1 0.12 11.2 0.1 1.4 1 0 0 1 1 1 0 PrkA AAA domain NACHT PF05729.12 gi|219853120|ref|YP_002467552.1| - 0.19 11.6 0.1 2.8 7.8 0.1 2.6 3 0 0 3 3 3 0 NACHT domain SKI PF01202.22 gi|219853120|ref|YP_002467552.1| - 0.29 11.3 0.1 0.29 11.3 0.1 2.1 3 0 0 3 3 1 0 Shikimate kinase NB-ARC PF00931.22 gi|219853120|ref|YP_002467552.1| - 0.4 9.8 2.1 0.37 9.9 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain MarR PF01047.22 gi|219853121|ref|YP_002467553.1| - 3e-10 39.9 0.0 7.2e-10 38.7 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|219853121|ref|YP_002467553.1| - 9.1e-08 31.9 0.0 2e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|219853121|ref|YP_002467553.1| - 6.3e-07 29.8 0.1 1.5e-06 28.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|219853121|ref|YP_002467553.1| - 0.0011 19.1 0.0 0.0025 18.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|219853121|ref|YP_002467553.1| - 0.0027 17.2 2.2 0.0041 16.7 0.0 2.5 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding KIP1 PF07765.12 gi|219853121|ref|YP_002467553.1| - 0.0041 17.2 1.0 0.015 15.4 0.0 2.2 3 0 0 3 3 3 1 KIP1-like protein TrmB PF01978.19 gi|219853121|ref|YP_002467553.1| - 0.0079 16.1 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RuvB_C PF05491.13 gi|219853121|ref|YP_002467553.1| - 0.012 15.5 1.7 0.29 11.0 0.0 2.5 2 1 1 3 3 3 0 RuvB C-terminal winged helix domain HTH_34 PF13601.6 gi|219853121|ref|YP_002467553.1| - 0.051 13.8 0.0 0.077 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC2_membrane PF01061.24 gi|219853122|ref|YP_002467554.1| - 2.2e-37 128.5 25.6 2.2e-37 128.5 25.6 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|219853122|ref|YP_002467554.1| - 9e-14 51.3 30.6 9e-14 51.3 30.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF2109 PF09882.9 gi|219853122|ref|YP_002467554.1| - 1.1 9.4 6.2 1.1 9.3 0.9 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2109) ABC_tran PF00005.27 gi|219853123|ref|YP_002467555.1| - 2.3e-34 118.9 0.0 4e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219853123|ref|YP_002467555.1| - 1.3e-11 44.9 3.6 1.4e-07 31.6 0.4 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|219853123|ref|YP_002467555.1| - 3.5e-10 40.5 0.0 6.7e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|219853123|ref|YP_002467555.1| - 1.6e-06 28.1 0.0 0.041 13.6 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|219853123|ref|YP_002467555.1| - 2e-05 25.2 0.0 3.8e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|219853123|ref|YP_002467555.1| - 0.00018 21.9 0.0 0.0013 19.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|219853123|ref|YP_002467555.1| - 0.00077 19.1 0.5 0.0016 18.1 0.5 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|219853123|ref|YP_002467555.1| - 0.0076 15.9 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|219853123|ref|YP_002467555.1| - 0.0089 16.0 0.0 0.026 14.4 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain SMC_N PF02463.19 gi|219853123|ref|YP_002467555.1| - 0.013 14.9 0.0 0.19 11.1 0.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|219853123|ref|YP_002467555.1| - 0.015 14.9 0.0 0.17 11.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|219853123|ref|YP_002467555.1| - 0.018 15.4 0.0 0.041 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|219853123|ref|YP_002467555.1| - 0.045 14.0 0.6 0.36 11.1 0.6 2.4 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|219853123|ref|YP_002467555.1| - 0.048 13.5 0.2 0.095 12.5 0.2 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_24 PF13479.6 gi|219853123|ref|YP_002467555.1| - 0.1 12.3 0.2 0.66 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain sCache_2 PF17200.4 gi|219853124|ref|YP_002467556.1| - 8.9e-21 74.3 0.4 1.1e-20 74.0 0.4 1.2 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|219853124|ref|YP_002467556.1| - 1.3e-15 57.4 0.1 1.6e-15 57.0 0.1 1.2 1 0 0 1 1 1 1 Cache domain DJ-1_PfpI PF01965.24 gi|219853125|ref|YP_002467557.1| - 2.5e-23 82.7 0.0 3.1e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family MFS_1 PF07690.16 gi|219853126|ref|YP_002467558.1| - 0.0012 17.8 3.6 0.0026 16.7 3.6 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily Mucin PF01456.17 gi|219853126|ref|YP_002467558.1| - 0.012 15.6 9.4 0.018 15.0 9.4 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein ABC2_membrane_3 PF12698.7 gi|219853126|ref|YP_002467558.1| - 0.09 11.9 2.3 0.046 12.8 0.5 1.4 2 0 0 2 2 2 0 ABC-2 family transporter protein ArsP_1 PF03773.13 gi|219853127|ref|YP_002467559.1| - 4.2e-70 236.2 26.0 4.9e-70 236.0 26.0 1.0 1 0 0 1 1 1 1 Predicted permease ECR1_N PF14382.6 gi|219853127|ref|YP_002467559.1| - 1.1 9.1 3.7 2.3 8.1 0.6 2.6 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region Thioredoxin_3 PF13192.6 gi|219853128|ref|YP_002467560.1| - 1.9e-25 88.7 0.5 2.1e-25 88.6 0.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|219853128|ref|YP_002467560.1| - 0.0068 16.6 0.2 0.56 10.4 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin ArsD PF06953.11 gi|219853128|ref|YP_002467560.1| - 0.021 15.2 0.0 0.025 15.0 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DUF1223 PF06764.11 gi|219853128|ref|YP_002467560.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1223) DGC PF08859.11 gi|219853129|ref|YP_002467561.1| - 1.5e-30 105.4 0.8 2.3e-30 104.8 0.8 1.3 1 0 0 1 1 1 1 DGC domain DGC PF08859.11 gi|219853130|ref|YP_002467562.1| - 2.8e-22 78.8 0.7 3.1e-22 78.7 0.7 1.0 1 0 0 1 1 1 1 DGC domain SBF PF01758.16 gi|219853131|ref|YP_002467563.1| - 1.8e-62 210.5 14.6 1.8e-62 210.5 14.6 2.3 2 1 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.21 gi|219853132|ref|YP_002467564.1| - 7.6e-19 68.5 0.0 9.6e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase MtrA PF04208.14 gi|219853133|ref|YP_002467565.1| - 3.1e-35 121.3 0.0 5.7e-35 120.5 0.0 1.4 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A LigB PF02900.18 gi|219853135|ref|YP_002467567.1| - 1.2e-42 145.9 0.0 1.4e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GATase PF00117.28 gi|219853136|ref|YP_002467568.1| - 3e-17 63.0 0.0 4.5e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|219853136|ref|YP_002467568.1| - 2.8e-07 30.5 0.3 1.3e-06 28.4 0.1 1.9 1 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|219853136|ref|YP_002467568.1| - 0.0079 16.0 0.1 0.013 15.3 0.1 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|219853136|ref|YP_002467568.1| - 0.033 13.8 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HEM4 PF02602.15 gi|219853136|ref|YP_002467568.1| - 0.062 12.6 0.1 0.13 11.6 0.0 1.4 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF2387 PF09526.10 gi|219853137|ref|YP_002467569.1| - 0.00024 21.2 0.4 0.00041 20.4 0.4 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) DUF951 PF06107.11 gi|219853137|ref|YP_002467569.1| - 0.0073 16.2 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF951) ADK_lid PF05191.14 gi|219853137|ref|YP_002467569.1| - 0.016 15.2 0.8 0.48 10.4 0.0 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-rbx1 PF12678.7 gi|219853137|ref|YP_002467569.1| - 0.027 14.8 1.2 0.044 14.1 1.2 1.3 1 0 0 1 1 1 0 RING-H2 zinc finger domain DUF35_N PF12172.8 gi|219853137|ref|YP_002467569.1| - 0.035 14.0 4.0 1.1 9.2 0.0 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PHD_4 PF16866.5 gi|219853137|ref|YP_002467569.1| - 0.046 13.8 1.7 0.07 13.2 1.7 1.3 1 0 0 1 1 1 0 PHD-finger PHD PF00628.29 gi|219853137|ref|YP_002467569.1| - 0.056 13.3 2.3 0.11 12.5 2.3 1.4 1 0 0 1 1 1 0 PHD-finger Prok-RING_1 PF14446.6 gi|219853137|ref|YP_002467569.1| - 0.064 13.2 1.9 0.13 12.2 1.9 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.7 gi|219853137|ref|YP_002467569.1| - 0.08 12.9 1.7 0.15 12.0 1.7 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|219853137|ref|YP_002467569.1| - 0.12 12.1 0.6 0.22 11.3 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Elf1 PF05129.13 gi|219853137|ref|YP_002467569.1| - 0.16 12.0 0.6 0.32 11.1 0.6 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like FdhE PF04216.12 gi|219853137|ref|YP_002467569.1| - 0.88 9.4 4.1 0.34 10.7 1.6 1.5 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation HypA PF01155.19 gi|219853137|ref|YP_002467569.1| - 1 9.4 3.3 0.87 9.6 1.6 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|219853137|ref|YP_002467569.1| - 3.6 7.6 7.3 12 5.9 7.0 2.0 1 1 1 2 2 2 0 Nudix N-terminal HD PF01966.22 gi|219853138|ref|YP_002467570.1| - 3.1e-14 53.3 3.3 6.1e-14 52.3 1.1 2.5 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|219853138|ref|YP_002467570.1| - 0.044 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 HDOD domain UPF0052 PF01933.18 gi|219853139|ref|YP_002467571.1| - 9e-49 166.3 0.0 1e-48 166.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Oxidored_molyb PF00174.19 gi|219853140|ref|YP_002467572.1| - 5.8e-29 100.9 0.0 9.7e-29 100.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF4405 PF14358.6 gi|219853141|ref|YP_002467573.1| - 3e-05 24.5 4.4 4e-05 24.1 4.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|219853141|ref|YP_002467573.1| - 0.00033 20.3 0.7 0.0004 20.0 0.7 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 RNA_pol_L_2 PF13656.6 gi|219853142|ref|YP_002467574.1| - 4.6e-16 58.3 0.0 5.4e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|219853142|ref|YP_002467574.1| - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Lactamase_B_2 PF12706.7 gi|219853143|ref|YP_002467575.1| - 4.8e-30 104.6 0.1 6e-30 104.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219853143|ref|YP_002467575.1| - 1.5e-13 51.2 0.3 2.1e-13 50.7 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|219853143|ref|YP_002467575.1| - 2.1e-05 24.5 0.0 5.6e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|219853144|ref|YP_002467576.1| - 9.3e-35 119.9 0.0 2.2e-34 118.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|219853144|ref|YP_002467576.1| - 3.3e-11 42.8 0.1 7.3e-11 41.7 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|219853144|ref|YP_002467576.1| - 1.2e-05 25.4 0.1 5.5e-05 23.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|219853144|ref|YP_002467576.1| - 7e-05 22.5 0.2 0.029 14.0 0.0 2.6 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|219853144|ref|YP_002467576.1| - 0.00012 21.8 0.0 0.00034 20.4 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein RuvB_N PF05496.12 gi|219853144|ref|YP_002467576.1| - 0.0012 18.6 0.1 0.0028 17.4 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|219853144|ref|YP_002467576.1| - 0.0017 18.5 0.0 0.0067 16.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|219853144|ref|YP_002467576.1| - 0.0033 17.7 0.8 2.8 8.2 0.1 3.0 1 1 2 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|219853144|ref|YP_002467576.1| - 0.0036 17.7 0.3 0.3 11.5 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_11 PF13086.6 gi|219853144|ref|YP_002467576.1| - 0.0057 16.5 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|219853144|ref|YP_002467576.1| - 0.0098 16.4 0.0 0.038 14.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|219853144|ref|YP_002467576.1| - 0.017 14.5 0.0 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|219853144|ref|YP_002467576.1| - 0.021 14.6 0.1 0.049 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|219853144|ref|YP_002467576.1| - 0.025 13.8 0.0 0.063 12.5 0.0 1.6 1 1 1 2 2 2 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|219853144|ref|YP_002467576.1| - 0.027 14.0 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|219853144|ref|YP_002467576.1| - 0.03 14.5 0.0 0.073 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain MnmE_helical PF12631.7 gi|219853144|ref|YP_002467576.1| - 0.094 12.9 0.3 0.2 11.8 0.3 1.5 1 0 0 1 1 1 0 MnmE helical domain AAA_28 PF13521.6 gi|219853144|ref|YP_002467576.1| - 0.1 12.9 0.0 0.8 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|219853144|ref|YP_002467576.1| - 0.16 12.5 0.0 0.38 11.3 0.0 1.8 1 1 0 1 1 1 0 ABC transporter Peptidase_M24 PF00557.24 gi|219853145|ref|YP_002467577.1| - 2e-40 138.7 0.2 2.4e-40 138.5 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|219853146|ref|YP_002467578.1| - 3.2e-42 144.6 0.5 4.1e-42 144.3 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1129 PF06570.11 gi|219853147|ref|YP_002467579.1| - 0.014 14.9 0.9 0.015 14.8 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2207 PF09972.9 gi|219853147|ref|YP_002467579.1| - 0.066 12.0 2.1 0.073 11.8 2.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4231 PF14015.6 gi|219853147|ref|YP_002467579.1| - 0.15 12.5 0.6 0.2 12.2 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3087 PF11286.8 gi|219853147|ref|YP_002467579.1| - 0.17 11.3 0.9 0.2 11.1 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) DUF202 PF02656.15 gi|219853147|ref|YP_002467579.1| - 0.19 12.2 1.7 0.24 11.8 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) HTH_24 PF13412.6 gi|219853148|ref|YP_002467580.1| - 0.00056 19.4 0.0 0.00097 18.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|219853148|ref|YP_002467580.1| - 0.0041 17.0 0.1 0.013 15.4 0.0 1.9 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|219853148|ref|YP_002467580.1| - 0.0057 16.7 0.1 0.011 15.7 0.1 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|219853148|ref|YP_002467580.1| - 0.022 14.7 0.2 0.031 14.2 0.2 1.4 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 gi|219853148|ref|YP_002467580.1| - 0.024 14.4 0.1 0.034 13.9 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|219853148|ref|YP_002467580.1| - 0.035 14.0 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|219853148|ref|YP_002467580.1| - 0.055 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|219853148|ref|YP_002467580.1| - 0.081 13.3 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Ribosomal_S19e PF01090.19 gi|219853148|ref|YP_002467580.1| - 0.11 12.1 0.0 3.7 7.2 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S19e Pdase_C33_assoc PF14756.6 gi|219853148|ref|YP_002467580.1| - 0.13 12.1 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Peptidase_C33-associated domain CHASE4 PF05228.13 gi|219853149|ref|YP_002467581.1| - 9.3e-37 126.3 0.0 1.7e-36 125.4 0.0 1.5 1 0 0 1 1 1 1 CHASE4 domain HATPase_c PF02518.26 gi|219853149|ref|YP_002467581.1| - 6.6e-19 68.5 0.0 1.2e-18 67.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|219853149|ref|YP_002467581.1| - 1.2e-06 28.6 0.1 7.5e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 PAS domain HisKA PF00512.25 gi|219853149|ref|YP_002467581.1| - 2.4e-06 27.5 0.9 6.6e-06 26.1 0.2 2.2 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|219853149|ref|YP_002467581.1| - 2.4e-06 27.7 0.5 0.00011 22.4 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 gi|219853149|ref|YP_002467581.1| - 9.1e-06 25.6 0.0 2.2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|219853149|ref|YP_002467581.1| - 0.00029 20.8 0.5 0.0062 16.5 0.0 3.0 3 0 0 3 3 3 1 PAS domain HAMP PF00672.25 gi|219853149|ref|YP_002467581.1| - 0.015 15.6 0.4 0.046 14.1 0.4 1.9 1 0 0 1 1 1 0 HAMP domain HPTransfase PF10090.9 gi|219853149|ref|YP_002467581.1| - 0.044 13.6 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain SPOB_a PF14689.6 gi|219853149|ref|YP_002467581.1| - 0.055 13.2 0.4 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain PrmA PF06325.13 gi|219853150|ref|YP_002467582.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|219853150|ref|YP_002467582.1| - 0.093 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|219853150|ref|YP_002467582.1| - 0.15 11.6 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Ldh_1_N PF00056.23 gi|219853151|ref|YP_002467583.1| - 6.1e-29 100.9 0.0 8.4e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|219853151|ref|YP_002467583.1| - 1.5e-22 80.3 0.0 2.1e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4C PF11975.8 gi|219853151|ref|YP_002467583.1| - 0.00031 20.9 0.1 0.00062 19.9 0.1 1.5 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase C-terminal domain Semialdhyde_dh PF01118.24 gi|219853151|ref|YP_002467583.1| - 0.0041 17.5 0.0 0.0076 16.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Glyco_hydro_4 PF02056.16 gi|219853151|ref|YP_002467583.1| - 0.0063 16.1 0.1 0.017 14.7 0.1 1.6 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase Transketolase_C PF02780.20 gi|219853151|ref|YP_002467583.1| - 0.086 12.7 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Transketolase, C-terminal domain EF1_GNE PF00736.19 gi|219853152|ref|YP_002467584.1| - 1.2e-18 67.1 0.2 1.4e-18 66.9 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain P2 PF07194.11 gi|219853152|ref|YP_002467584.1| - 0.057 13.5 0.2 0.13 12.4 0.1 1.7 1 1 0 1 1 1 0 P2 response regulator binding domain DUF1610 PF07754.11 gi|219853153|ref|YP_002467585.1| - 2e-08 34.1 9.3 1.8e-06 27.8 5.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|219853153|ref|YP_002467585.1| - 0.00096 19.1 12.8 0.12 12.4 12.8 2.2 1 1 0 1 1 1 1 Double zinc ribbon C1_2 PF03107.16 gi|219853153|ref|YP_002467585.1| - 0.002 18.4 10.1 0.048 14.0 3.1 2.1 1 1 1 2 2 2 2 C1 domain DUF1272 PF06906.11 gi|219853153|ref|YP_002467585.1| - 0.0027 17.8 10.6 0.0044 17.1 10.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) PhnA_Zn_Ribbon PF08274.12 gi|219853153|ref|YP_002467585.1| - 0.018 15.0 1.7 0.018 15.0 1.7 3.2 2 2 1 3 3 3 0 PhnA Zinc-Ribbon Rhodanese_C PF12368.8 gi|219853153|ref|YP_002467585.1| - 0.025 15.0 8.4 0.03 14.7 8.4 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal zinc-ribbons_6 PF07191.12 gi|219853153|ref|YP_002467585.1| - 0.035 14.1 11.5 0.33 11.0 11.5 1.9 1 1 0 1 1 1 0 zinc-ribbons zf-CHY PF05495.12 gi|219853153|ref|YP_002467585.1| - 0.057 13.9 9.6 0.2 12.2 9.6 1.8 1 1 0 1 1 1 0 CHY zinc finger zinc_ribbon_2 PF13240.6 gi|219853153|ref|YP_002467585.1| - 0.06 13.1 14.8 1.1 9.0 2.3 3.9 2 1 1 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|219853153|ref|YP_002467585.1| - 0.065 13.3 8.2 0.087 12.9 8.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Auto_anti-p27 PF06677.12 gi|219853153|ref|YP_002467585.1| - 0.13 12.4 1.0 0.13 12.4 1.0 2.7 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FYVE_2 PF02318.16 gi|219853153|ref|YP_002467585.1| - 0.17 12.1 5.3 0.18 12.0 5.3 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|219853153|ref|YP_002467585.1| - 0.88 9.5 10.6 0.17 11.8 5.4 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Nop10p PF04135.12 gi|219853153|ref|YP_002467585.1| - 1.3 9.1 8.5 0.25 11.4 2.5 2.2 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.13 gi|219853153|ref|YP_002467585.1| - 1.8 6.4 6.5 1.8 6.3 6.5 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 C1_1 PF00130.22 gi|219853153|ref|YP_002467585.1| - 1.9 8.4 10.7 48 4.0 10.7 2.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.6 gi|219853153|ref|YP_002467585.1| - 3 7.3 18.8 40 3.6 11.3 3.6 2 1 0 2 2 2 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.10 gi|219853153|ref|YP_002467585.1| - 3.6 7.4 12.7 8.2 6.3 0.1 3.7 2 1 1 3 3 3 0 A2L zinc ribbon domain HypA PF01155.19 gi|219853153|ref|YP_002467585.1| - 6.1 6.9 12.1 4.5 7.3 1.5 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|219853153|ref|YP_002467585.1| - 7 6.8 10.9 1.6e+02 2.5 10.9 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|219853153|ref|YP_002467585.1| - 8.4 6.6 17.8 2.2 8.4 0.4 4.0 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain AA_kinase PF00696.28 gi|219853154|ref|YP_002467586.1| - 1.7e-07 31.1 0.0 0.00037 20.2 0.0 2.2 1 1 0 2 2 2 2 Amino acid kinase family Ribonuc_red_lgC PF02867.15 gi|219853155|ref|YP_002467587.1| - 2.9e-138 461.7 0.0 1.2e-135 453.1 0.0 2.5 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|219853155|ref|YP_002467587.1| - 5.2e-15 55.2 0.0 1.1e-14 54.2 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain IBR PF01485.21 gi|219853155|ref|YP_002467587.1| - 0.051 13.8 5.3 0.15 12.3 5.3 1.8 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain C1_1 PF00130.22 gi|219853155|ref|YP_002467587.1| - 0.21 11.5 4.7 0.67 9.9 4.7 1.9 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.12 gi|219853155|ref|YP_002467587.1| - 0.47 10.5 5.1 0.31 11.1 1.1 2.4 2 0 0 2 2 2 0 zinc-ribbons PLDc_2 PF13091.6 gi|219853156|ref|YP_002467588.1| - 1.1e-39 135.4 0.0 6.3e-19 68.2 0.1 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|219853156|ref|YP_002467588.1| - 9.6e-08 31.9 1.3 0.0095 16.1 0.4 2.8 2 0 0 2 2 2 2 Phospholipase D Active site motif HTH_23 PF13384.6 gi|219853157|ref|YP_002467589.1| - 4.3e-06 26.4 0.1 1e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 gi|219853157|ref|YP_002467589.1| - 1.1e-05 25.4 0.2 2.3e-05 24.4 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|219853157|ref|YP_002467589.1| - 5.2e-05 23.0 0.0 8.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|219853157|ref|YP_002467589.1| - 0.00015 21.8 0.2 0.00022 21.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|219853157|ref|YP_002467589.1| - 0.00016 22.0 0.0 0.00021 21.5 0.0 1.2 1 0 0 1 1 1 1 Transposase Sigma70_r4 PF04545.16 gi|219853157|ref|YP_002467589.1| - 0.00016 21.1 0.1 0.00024 20.5 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|219853157|ref|YP_002467589.1| - 0.00037 20.1 0.1 0.00074 19.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|219853157|ref|YP_002467589.1| - 0.00059 19.3 0.1 0.00091 18.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|219853157|ref|YP_002467589.1| - 0.002 18.4 0.2 0.0037 17.6 0.1 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain Phage_NinH PF06322.11 gi|219853157|ref|YP_002467589.1| - 0.003 17.4 0.0 0.0053 16.6 0.0 1.4 1 0 0 1 1 1 1 Phage NinH protein HTH_11 PF08279.12 gi|219853157|ref|YP_002467589.1| - 0.004 17.1 0.0 0.0061 16.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|219853157|ref|YP_002467589.1| - 0.0055 16.9 0.3 0.054 13.7 0.1 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|219853157|ref|YP_002467589.1| - 0.0066 16.5 0.0 0.041 13.9 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|219853157|ref|YP_002467589.1| - 0.0093 15.8 0.0 0.019 14.8 0.0 1.6 1 1 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_37 PF13744.6 gi|219853157|ref|YP_002467589.1| - 0.01 15.8 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|219853157|ref|YP_002467589.1| - 0.011 16.0 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_29 PF13551.6 gi|219853157|ref|YP_002467589.1| - 0.013 15.5 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_38 PF13936.6 gi|219853157|ref|YP_002467589.1| - 0.019 14.7 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.10 gi|219853157|ref|YP_002467589.1| - 0.027 14.5 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Cro HTH_8 PF02954.19 gi|219853157|ref|YP_002467589.1| - 0.031 14.1 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_7 PF02796.15 gi|219853157|ref|YP_002467589.1| - 0.039 14.0 0.1 0.069 13.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase P22_Cro PF14549.6 gi|219853157|ref|YP_002467589.1| - 0.052 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Fe_dep_repress PF01325.19 gi|219853157|ref|YP_002467589.1| - 0.054 13.7 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HNF-1_N PF04814.13 gi|219853157|ref|YP_002467589.1| - 0.058 14.0 0.0 0.073 13.7 0.0 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_1 PF00126.27 gi|219853157|ref|YP_002467589.1| - 0.06 13.3 0.2 0.11 12.4 0.2 1.4 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 gi|219853157|ref|YP_002467589.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|219853157|ref|YP_002467589.1| - 0.085 12.3 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.6 gi|219853157|ref|YP_002467589.1| - 0.089 13.2 0.8 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_Tc3_1 PF11427.8 gi|219853157|ref|YP_002467589.1| - 0.097 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Tc3 transposase HTH_10 PF04967.12 gi|219853157|ref|YP_002467589.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain TetR_N PF00440.23 gi|219853157|ref|YP_002467589.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 gi|219853157|ref|YP_002467589.1| - 0.17 12.0 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain LacI PF00356.21 gi|219853157|ref|YP_002467589.1| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family MarR PF01047.22 gi|219853158|ref|YP_002467590.1| - 7.5e-05 22.6 0.1 8.3e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|219853158|ref|YP_002467590.1| - 0.0025 17.6 0.0 0.0031 17.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|219853158|ref|YP_002467590.1| - 0.0053 16.3 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|219853158|ref|YP_002467590.1| - 0.013 15.4 0.1 0.055 13.4 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.17 gi|219853158|ref|YP_002467590.1| - 0.016 15.1 0.1 0.03 14.2 0.1 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.20 gi|219853158|ref|YP_002467590.1| - 0.02 14.8 0.1 0.03 14.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_micro PF17007.5 gi|219853158|ref|YP_002467590.1| - 0.021 13.7 0.1 0.023 13.5 0.1 1.0 1 0 0 1 1 1 0 HTH-like Replic_Relax PF13814.6 gi|219853158|ref|YP_002467590.1| - 0.024 14.7 0.3 0.027 14.5 0.3 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_DeoR PF08220.12 gi|219853158|ref|YP_002467590.1| - 0.034 13.9 0.1 0.043 13.6 0.1 1.1 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|219853158|ref|YP_002467590.1| - 0.057 13.4 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|219853158|ref|YP_002467590.1| - 0.067 13.3 0.1 0.11 12.6 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain tRNA_anti-codon PF01336.25 gi|219853159|ref|YP_002467591.1| - 0.00087 19.2 0.9 0.0047 16.9 0.9 2.0 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain TOBE_2 PF08402.10 gi|219853159|ref|YP_002467591.1| - 0.004 17.3 0.1 0.0076 16.4 0.1 1.4 1 0 0 1 1 1 1 TOBE domain DUF4131 PF13567.6 gi|219853159|ref|YP_002467591.1| - 0.036 13.7 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) tRNA_anti_2 PF13742.6 gi|219853159|ref|YP_002467591.1| - 0.042 14.1 0.3 0.49 10.6 0.3 2.0 1 1 1 2 2 2 0 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.7 gi|219853159|ref|YP_002467591.1| - 0.096 12.3 1.1 0.2 11.3 1.1 1.6 1 1 0 1 1 1 0 tRNA_anti-like FLgD_tudor PF13861.6 gi|219853159|ref|YP_002467591.1| - 0.11 12.8 1.4 0.2 11.9 0.9 1.8 2 0 0 2 2 2 0 FlgD Tudor-like domain GAF_2 PF13185.6 gi|219853160|ref|YP_002467592.1| - 6.9e-15 55.6 0.1 1.9e-14 54.1 0.1 1.8 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|219853160|ref|YP_002467592.1| - 3.2e-12 46.6 0.8 4.6e-07 30.1 0.1 4.0 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|219853160|ref|YP_002467592.1| - 1.5e-09 38.0 0.0 0.0029 17.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|219853160|ref|YP_002467592.1| - 6.9e-09 35.5 0.0 0.00096 19.1 0.0 3.3 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219853160|ref|YP_002467592.1| - 0.00051 20.0 0.0 0.07 13.1 0.0 2.6 2 0 0 2 2 2 1 PAS fold MLTR_LBD PF17765.1 gi|219853160|ref|YP_002467592.1| - 0.0097 16.0 0.0 0.0097 16.0 0.0 3.1 4 1 0 4 4 4 1 MmyB-like transcription regulator ligand binding domain FAM212 PF15342.6 gi|219853160|ref|YP_002467592.1| - 0.11 12.3 0.2 0.38 10.6 0.2 1.9 1 1 0 1 1 1 0 FAM212 family MscL PF01741.18 gi|219853161|ref|YP_002467593.1| - 2.3e-18 66.7 5.3 2.5e-18 66.5 5.3 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF4514 PF14986.6 gi|219853161|ref|YP_002467593.1| - 0.048 13.6 0.9 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) CAAD PF14159.6 gi|219853161|ref|YP_002467593.1| - 0.34 10.8 4.8 0.31 10.9 1.2 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase YdjM PF04307.14 gi|219853161|ref|YP_002467593.1| - 1.5 8.1 5.4 0.38 10.1 2.2 1.6 1 1 1 2 2 2 0 LexA-binding, inner membrane-associated putative hydrolase DUF2700 PF10912.8 gi|219853161|ref|YP_002467593.1| - 1.9 8.5 10.1 30 4.6 9.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2700) Y_Y_Y PF07495.13 gi|219853162|ref|YP_002467594.1| - 0.049 13.6 0.4 0.31 11.0 0.3 2.3 2 0 0 2 2 2 0 Y_Y_Y domain DUF3467 PF11950.8 gi|219853163|ref|YP_002467595.1| - 3.4e-16 59.2 0.0 3.9e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DHquinase_I PF01487.15 gi|219853164|ref|YP_002467596.1| - 8.3e-30 104.7 0.0 1e-29 104.4 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Chorismate_synt PF01264.21 gi|219853165|ref|YP_002467597.1| - 3.5e-129 430.2 1.3 5e-129 429.7 1.3 1.2 1 0 0 1 1 1 1 Chorismate synthase SKI PF01202.22 gi|219853166|ref|YP_002467598.1| - 9e-33 113.6 0.0 1.3e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate kinase Shikimate_dh_N PF08501.11 gi|219853166|ref|YP_002467598.1| - 1.2e-24 86.4 0.0 2.2e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|219853166|ref|YP_002467598.1| - 9.2e-09 34.9 0.0 3.3e-08 33.1 0.0 2.1 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|219853166|ref|YP_002467598.1| - 2.3e-06 27.7 0.0 4.1e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AAA_18 PF13238.6 gi|219853166|ref|YP_002467598.1| - 9.4e-05 23.0 0.1 0.00029 21.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain 2-Hacid_dh_C PF02826.19 gi|219853166|ref|YP_002467598.1| - 0.03 13.7 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|219853166|ref|YP_002467598.1| - 0.037 13.1 0.1 0.064 12.3 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain CoaE PF01121.20 gi|219853166|ref|YP_002467598.1| - 0.091 12.4 0.1 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 Dephospho-CoA kinase Pyr_redox_2 PF07992.14 gi|219853166|ref|YP_002467598.1| - 0.13 11.5 0.1 0.2 10.8 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Cytidylate_kin2 PF13189.6 gi|219853166|ref|YP_002467598.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase-like family NAD_binding_8 PF13450.6 gi|219853166|ref|YP_002467598.1| - 0.16 12.2 0.4 0.41 10.9 0.4 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain EPSP_synthase PF00275.20 gi|219853167|ref|YP_002467599.1| - 1.6e-108 363.1 0.0 1.8e-108 362.9 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PDT PF00800.18 gi|219853168|ref|YP_002467600.1| - 1.1e-39 136.2 0.0 1.3e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|219853168|ref|YP_002467600.1| - 9.7e-09 34.9 0.0 2.1e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 ACT domain DRTGG PF07085.12 gi|219853168|ref|YP_002467600.1| - 0.045 13.5 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 DRTGG domain PDH PF02153.17 gi|219853169|ref|YP_002467601.1| - 1.4e-41 142.2 0.0 1.7e-41 141.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|219853169|ref|YP_002467601.1| - 0.00012 22.3 0.5 0.0084 16.3 0.5 2.3 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|219853169|ref|YP_002467601.1| - 0.0003 20.7 0.3 0.017 15.0 0.2 2.3 1 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|219853169|ref|YP_002467601.1| - 0.0032 16.9 0.0 0.006 16.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|219853169|ref|YP_002467601.1| - 0.004 17.7 1.6 0.33 11.6 0.2 2.5 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|219853169|ref|YP_002467601.1| - 0.029 14.0 0.2 1.4 8.6 0.1 2.3 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|219853169|ref|YP_002467601.1| - 0.036 13.6 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.21 gi|219853169|ref|YP_002467601.1| - 0.072 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF938 PF06080.12 gi|219853169|ref|YP_002467601.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) NAD_Gly3P_dh_N PF01210.23 gi|219853169|ref|YP_002467601.1| - 0.13 12.2 1.2 1.2 9.1 0.0 2.3 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DHQS PF01959.16 gi|219853170|ref|YP_002467602.1| - 1.1e-119 399.5 0.4 1.3e-119 399.3 0.4 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Pantoate_transf PF02548.15 gi|219853170|ref|YP_002467602.1| - 0.12 11.7 0.2 0.12 11.7 0.2 1.8 2 0 0 2 2 2 0 Ketopantoate hydroxymethyltransferase Prot_ATP_ID_OB PF16450.5 gi|219853170|ref|YP_002467602.1| - 1.5 8.8 8.3 95 3.1 0.5 4.7 4 1 0 4 4 4 0 Proteasomal ATPase OB C-terminal domain DeoC PF01791.9 gi|219853171|ref|YP_002467603.1| - 8.4e-53 179.4 0.1 9.7e-53 179.2 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.6 gi|219853171|ref|YP_002467603.1| - 0.097 12.1 0.4 3.3 7.1 0.3 2.7 1 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Dus PF01207.17 gi|219853171|ref|YP_002467603.1| - 0.49 9.4 1.5 20 4.2 0.0 3.0 2 2 0 3 3 3 0 Dihydrouridine synthase (Dus) DeoC PF01791.9 gi|219853172|ref|YP_002467604.1| - 4.6e-55 186.8 0.0 5.3e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AI-2E_transport PF01594.16 gi|219853173|ref|YP_002467605.1| - 2.3e-35 122.3 42.5 2.8e-35 122.0 42.5 1.1 1 0 0 1 1 1 1 AI-2E family transporter DUF3084 PF11283.8 gi|219853173|ref|YP_002467605.1| - 3.6 7.7 10.6 0.14 12.2 2.3 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF3084) TrmB PF01978.19 gi|219853174|ref|YP_002467606.1| - 1e-17 63.8 0.1 2e-17 62.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|219853174|ref|YP_002467606.1| - 0.0031 17.6 0.0 0.021 14.9 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain PadR PF03551.14 gi|219853174|ref|YP_002467606.1| - 0.0065 16.4 0.1 0.077 13.0 0.0 2.6 1 1 2 3 3 3 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|219853174|ref|YP_002467606.1| - 0.0073 16.5 0.0 0.035 14.3 0.0 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|219853174|ref|YP_002467606.1| - 0.063 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Regulator_TrmB PF11495.8 gi|219853174|ref|YP_002467606.1| - 0.099 11.8 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB MFS_1 PF07690.16 gi|219853175|ref|YP_002467607.1| - 3.7e-37 128.1 87.3 1.4e-31 109.7 50.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219853175|ref|YP_002467607.1| - 1.1e-10 40.9 41.4 5.3e-07 28.9 13.1 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|219853175|ref|YP_002467607.1| - 1.5 7.2 21.8 1.2 7.5 9.1 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector DUF4006 PF13179.6 gi|219853175|ref|YP_002467607.1| - 6.2 6.8 5.9 0.66 9.9 0.2 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF4006) SRAP PF02586.14 gi|219853176|ref|YP_002467608.1| - 1.8e-59 200.9 0.0 2e-59 200.8 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) CBM_6 PF03422.15 gi|219853178|ref|YP_002467610.1| - 7.4e-20 71.5 0.6 7.4e-20 71.5 0.6 2.2 3 0 0 3 3 3 1 Carbohydrate binding module (family 6) Lipase_GDSL_2 PF13472.6 gi|219853178|ref|YP_002467610.1| - 9.1e-20 71.8 0.6 1.6e-19 71.0 0.6 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|219853178|ref|YP_002467610.1| - 3.1e-15 56.7 0.1 4.7e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF5010_C PF18099.1 gi|219853178|ref|YP_002467610.1| - 4.7e-15 55.7 0.0 9.6e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|219853178|ref|YP_002467610.1| - 1.6e-06 28.4 0.1 3.3e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) Dockerin_1 PF00404.18 gi|219853178|ref|YP_002467610.1| - 3.4e-06 27.2 2.9 2.2e-05 24.6 1.0 2.9 3 0 0 3 3 3 1 Dockerin type I domain Lipase_GDSL_3 PF14606.6 gi|219853178|ref|YP_002467610.1| - 1.2e-05 25.5 0.0 2.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family OSK PF17182.4 gi|219853178|ref|YP_002467610.1| - 0.012 14.8 0.1 0.02 14.2 0.1 1.2 1 0 0 1 1 1 0 OSK domain EF-hand_6 PF13405.6 gi|219853178|ref|YP_002467610.1| - 0.013 15.4 11.8 0.072 13.1 0.2 3.7 3 1 1 4 4 4 0 EF-hand domain EF-hand_1 PF00036.32 gi|219853178|ref|YP_002467610.1| - 0.023 14.2 14.9 0.053 13.1 0.4 3.8 4 0 0 4 4 4 0 EF hand EF-hand_7 PF13499.6 gi|219853178|ref|YP_002467610.1| - 2.2 8.8 5.5 1.4 9.4 1.0 2.7 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_8 PF13833.6 gi|219853178|ref|YP_002467610.1| - 2.6 8.0 8.1 0.74 9.7 0.3 2.9 3 0 0 3 3 3 0 EF-hand domain pair TIR_2 PF13676.6 gi|219853179|ref|YP_002467611.1| - 1.5e-06 28.8 0.0 1.5e-06 28.8 0.0 1.1 1 0 0 1 1 1 1 TIR domain TPR_12 PF13424.6 gi|219853180|ref|YP_002467612.1| - 5.4e-18 65.1 33.6 1.1e-07 32.1 2.9 4.3 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|219853180|ref|YP_002467612.1| - 4.8e-17 62.4 9.1 8.1e-17 61.6 9.1 1.5 1 1 0 1 1 1 1 MalT-like TPR region TPR_4 PF07721.14 gi|219853180|ref|YP_002467612.1| - 5.1e-14 51.4 23.6 0.02 15.4 0.3 7.8 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|219853180|ref|YP_002467612.1| - 1.4e-12 47.0 20.7 0.076 12.9 0.3 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|219853180|ref|YP_002467612.1| - 5e-09 35.6 11.0 0.077 13.2 0.1 7.7 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|219853180|ref|YP_002467612.1| - 6.7e-09 35.2 7.7 0.035 14.0 0.1 7.4 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|219853180|ref|YP_002467612.1| - 2.6e-08 33.3 17.5 0.57 10.3 0.4 9.6 6 5 2 9 9 9 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|219853180|ref|YP_002467612.1| - 7e-08 32.7 18.4 0.32 11.9 0.1 7.2 6 2 2 8 8 8 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|219853180|ref|YP_002467612.1| - 1.1e-07 31.4 0.2 0.44 10.3 0.0 6.3 7 0 0 7 7 7 1 TPR repeat ANAPC5 PF12862.7 gi|219853180|ref|YP_002467612.1| - 0.0001 22.3 1.3 3.2 7.9 0.1 4.0 2 1 2 4 4 4 2 Anaphase-promoting complex subunit 5 TPR_8 PF13181.6 gi|219853180|ref|YP_002467612.1| - 0.0024 18.0 8.1 11 6.6 0.0 6.9 8 1 1 9 9 7 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|219853180|ref|YP_002467612.1| - 0.012 16.2 16.8 5 7.9 1.7 5.8 6 1 0 6 6 5 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|219853180|ref|YP_002467612.1| - 0.014 14.6 1.1 1.8 7.7 0.2 3.8 2 2 2 4 4 4 0 Tetratricopeptide repeat MdoG PF04349.12 gi|219853180|ref|YP_002467612.1| - 0.062 12.2 0.1 7.1 5.4 0.0 3.0 4 0 0 4 4 4 0 Periplasmic glucan biosynthesis protein, MdoG Snf7 PF03357.21 gi|219853180|ref|YP_002467612.1| - 0.065 12.8 0.8 0.34 10.5 0.0 2.4 2 1 1 3 3 3 0 Snf7 PPR PF01535.20 gi|219853180|ref|YP_002467612.1| - 0.26 11.6 5.6 1.5e+02 3.0 0.0 5.3 6 0 0 6 6 5 0 PPR repeat TPR_19 PF14559.6 gi|219853180|ref|YP_002467612.1| - 0.27 11.8 16.4 0.12 12.9 1.3 4.7 2 2 3 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|219853180|ref|YP_002467612.1| - 0.68 10.7 10.3 8 7.3 0.0 5.3 6 0 0 6 6 5 0 Tetratricopeptide repeat PPR_1 PF12854.7 gi|219853180|ref|YP_002467612.1| - 3.1 7.6 12.1 6.6 6.5 0.2 4.9 5 0 0 5 5 5 0 PPR repeat TPR_17 PF13431.6 gi|219853180|ref|YP_002467612.1| - 8.9 7.0 15.2 4.8 7.8 0.2 5.9 7 0 0 7 7 7 0 Tetratricopeptide repeat CbiM PF01891.16 gi|219853181|ref|YP_002467613.1| - 1.3e-54 185.2 28.0 1.4e-54 185.1 28.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF2109 PF09882.9 gi|219853181|ref|YP_002467613.1| - 0.035 14.1 0.7 0.035 14.1 0.7 3.0 3 0 0 3 3 3 0 Predicted membrane protein (DUF2109) S_4TM PF18159.1 gi|219853181|ref|YP_002467613.1| - 0.071 12.4 0.4 0.071 12.4 0.4 2.1 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain PDGLE PF13190.6 gi|219853182|ref|YP_002467614.1| - 1.5e-17 63.3 0.5 1.7e-17 63.0 0.5 1.1 1 0 0 1 1 1 1 PDGLE domain DUF2613 PF11021.8 gi|219853182|ref|YP_002467614.1| - 0.017 15.2 7.2 0.2 11.8 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DUF1616 PF07760.11 gi|219853182|ref|YP_002467614.1| - 0.12 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) OppC_N PF12911.7 gi|219853182|ref|YP_002467614.1| - 0.14 12.1 3.8 0.16 12.0 0.1 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C FixH PF05751.11 gi|219853182|ref|YP_002467614.1| - 0.24 11.4 0.5 0.39 10.7 0.5 1.3 1 0 0 1 1 1 0 FixH peroxidase PF00141.23 gi|219853184|ref|YP_002467616.1| - 3.4e-87 291.9 0.0 2.2e-46 158.4 0.0 2.2 2 0 0 2 2 2 2 Peroxidase Radical_SAM PF04055.21 gi|219853185|ref|YP_002467617.1| - 9.5e-21 74.9 0.0 1.8e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|219853185|ref|YP_002467617.1| - 8e-10 39.1 1.2 1.8e-09 38.0 1.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|219853185|ref|YP_002467617.1| - 3.7e-08 33.7 0.2 8.1e-08 32.6 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219853185|ref|YP_002467617.1| - 6.5e-06 26.3 1.0 1e-05 25.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Hydrolase PF00702.26 gi|219853185|ref|YP_002467617.1| - 0.09 13.0 0.0 22 5.3 0.0 2.4 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase AsnC_trans_reg2 PF17805.1 gi|219853186|ref|YP_002467618.1| - 9.7e-24 83.3 0.0 1.3e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|219853186|ref|YP_002467618.1| - 2.7e-10 39.9 0.6 6.1e-10 38.8 0.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|219853186|ref|YP_002467618.1| - 1.7e-05 24.3 1.1 0.13 11.8 0.0 3.0 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|219853186|ref|YP_002467618.1| - 0.03 13.9 0.2 0.088 12.4 0.2 1.8 1 1 0 1 1 1 0 CodY helix-turn-helix domain P2 PF07194.11 gi|219853186|ref|YP_002467618.1| - 0.13 12.4 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 P2 response regulator binding domain HTH_20 PF12840.7 gi|219853186|ref|YP_002467618.1| - 0.14 12.3 0.2 0.42 10.7 0.1 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|219853187|ref|YP_002467619.1| - 1.3e-24 86.1 0.0 2.1e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|219853187|ref|YP_002467619.1| - 2.3e-08 33.7 0.1 1.3e-07 31.3 0.0 2.2 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|219853187|ref|YP_002467619.1| - 0.0017 18.2 0.1 0.003 17.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|219853187|ref|YP_002467619.1| - 0.0018 18.7 0.0 0.0031 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|219853187|ref|YP_002467619.1| - 0.0045 17.0 0.1 0.0071 16.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|219853187|ref|YP_002467619.1| - 0.0072 15.9 0.2 0.031 13.8 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|219853187|ref|YP_002467619.1| - 0.017 14.8 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MarR PF01047.22 gi|219853187|ref|YP_002467619.1| - 0.044 13.7 0.0 0.087 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|219853187|ref|YP_002467619.1| - 0.052 13.5 0.1 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_Crp_2 PF13545.6 gi|219853187|ref|YP_002467619.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Radical_SAM PF04055.21 gi|219853188|ref|YP_002467620.1| - 1.9e-27 96.7 0.0 2.8e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|219853188|ref|YP_002467620.1| - 2.5e-12 47.3 0.0 4.3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|219853188|ref|YP_002467620.1| - 2.2e-09 37.5 0.0 4.3e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|219853188|ref|YP_002467620.1| - 3.2e-08 33.9 0.1 8e-08 32.7 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain NHL PF01436.21 gi|219853189|ref|YP_002467621.1| - 2.1e-104 336.7 39.6 1e-09 37.9 0.1 12.5 12 0 0 12 12 12 12 NHL repeat DUF5128 PF17170.4 gi|219853189|ref|YP_002467621.1| - 3e-42 145.0 25.8 6e-07 28.9 0.1 8.5 2 2 8 10 10 10 10 6-bladed beta-propeller SBBP PF06739.11 gi|219853189|ref|YP_002467621.1| - 2.4e-38 129.8 69.1 0.0013 18.7 1.6 12.7 12 0 0 12 12 12 11 Beta-propeller repeat SGL PF08450.12 gi|219853189|ref|YP_002467621.1| - 1.6e-31 109.8 26.9 0.00048 19.8 0.7 11.1 3 2 5 10 10 10 9 SMP-30/Gluconolactonase/LRE-like region PKD PF00801.20 gi|219853189|ref|YP_002467621.1| - 4.5e-31 106.5 31.7 8.1e-12 44.8 4.7 3.7 3 0 0 3 3 3 3 PKD domain Phytase-like PF13449.6 gi|219853189|ref|YP_002467621.1| - 1.1e-15 58.3 13.5 0.065 13.2 0.0 10.7 9 3 2 11 11 11 3 Esterase-like activity of phytase SdiA-regulated PF06977.11 gi|219853189|ref|YP_002467621.1| - 4.4e-11 42.5 14.0 0.26 10.5 0.0 10.5 8 3 4 12 12 12 4 SdiA-regulated Dockerin_1 PF00404.18 gi|219853189|ref|YP_002467621.1| - 2.2e-07 30.9 0.4 2.2e-07 30.9 0.4 2.0 2 0 0 2 2 2 1 Dockerin type I domain US22 PF02393.16 gi|219853189|ref|YP_002467621.1| - 3.9e-05 23.9 9.4 50 4.2 0.1 9.1 7 4 1 10 10 10 0 US22 like EF-hand_6 PF13405.6 gi|219853189|ref|YP_002467621.1| - 0.00023 20.8 2.4 0.11 12.5 0.1 3.3 2 1 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219853189|ref|YP_002467621.1| - 0.0022 17.4 7.4 0.075 12.6 0.1 3.5 3 0 0 3 3 3 2 EF hand Ntox33 PF15533.6 gi|219853189|ref|YP_002467621.1| - 0.012 16.0 7.8 70 4.0 0.0 7.2 8 0 0 8 8 8 0 Bacterial toxin 33 Crystall_2 PF09076.10 gi|219853189|ref|YP_002467621.1| - 0.053 13.4 13.5 11 6.0 0.2 6.1 6 0 0 6 6 6 0 Beta/Gamma crystallin Gelsolin PF00626.22 gi|219853189|ref|YP_002467621.1| - 0.079 12.9 0.1 24 4.9 0.0 3.9 4 0 0 4 4 4 0 Gelsolin repeat LVIVD PF08309.11 gi|219853189|ref|YP_002467621.1| - 0.75 9.2 3.9 7.6 5.9 0.3 4.1 2 0 0 2 2 2 0 LVIVD repeat EF-hand_8 PF13833.6 gi|219853189|ref|YP_002467621.1| - 1.3 9.0 3.2 1.9 8.4 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair NHL PF01436.21 gi|219853190|ref|YP_002467622.1| - 1.5e-47 157.3 18.7 1.5e-07 31.1 0.1 6.5 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.11 gi|219853190|ref|YP_002467622.1| - 1.5e-23 82.5 19.2 0.00048 20.1 0.2 6.6 6 0 0 6 6 6 6 Beta-propeller repeat SGL PF08450.12 gi|219853190|ref|YP_002467622.1| - 5e-22 78.7 10.8 0.0003 20.4 0.1 6.2 1 1 5 6 6 6 5 SMP-30/Gluconolactonase/LRE-like region Phytase-like PF13449.6 gi|219853190|ref|YP_002467622.1| - 8.4e-14 52.2 0.7 0.061 13.3 0.0 5.7 1 1 5 6 6 6 4 Esterase-like activity of phytase DUF5128 PF17170.4 gi|219853190|ref|YP_002467622.1| - 9.3e-13 48.0 3.3 5.8e-07 29.0 0.3 3.2 2 1 1 3 3 3 3 6-bladed beta-propeller SdiA-regulated PF06977.11 gi|219853190|ref|YP_002467622.1| - 1.2e-09 37.8 4.3 0.071 12.3 0.1 5.6 4 1 1 5 5 5 2 SdiA-regulated EF-hand_6 PF13405.6 gi|219853190|ref|YP_002467622.1| - 0.00018 21.2 1.7 0.52 10.4 0.1 2.7 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219853190|ref|YP_002467622.1| - 0.00026 20.3 3.5 0.39 10.4 0.2 2.6 2 0 0 2 2 2 2 EF hand Reg_prop PF07494.11 gi|219853190|ref|YP_002467622.1| - 0.00053 19.9 1.7 12 6.5 0.1 5.9 6 0 0 6 6 6 0 Two component regulator propeller Dockerin_1 PF00404.18 gi|219853190|ref|YP_002467622.1| - 0.0013 18.8 6.4 0.0024 18.0 3.4 2.4 2 0 0 2 2 2 1 Dockerin type I domain US22 PF02393.16 gi|219853190|ref|YP_002467622.1| - 0.0017 18.6 0.6 17 5.7 0.0 4.9 3 1 2 5 5 5 0 US22 like Ldl_recept_b PF00058.17 gi|219853190|ref|YP_002467622.1| - 0.013 15.9 0.0 11 6.6 0.0 4.1 5 0 0 5 5 4 0 Low-density lipoprotein receptor repeat class B DPPIV_N PF00930.21 gi|219853190|ref|YP_002467622.1| - 0.023 13.5 0.2 0.023 13.5 0.2 2.6 4 0 0 4 4 4 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Cytotoxic PF09000.10 gi|219853190|ref|YP_002467622.1| - 0.11 12.9 0.1 24 5.4 0.0 3.7 3 1 1 4 4 4 0 Cytotoxic Death_2 PF14786.6 gi|219853190|ref|YP_002467622.1| - 0.11 12.4 0.0 38 4.2 0.0 3.5 1 1 3 4 4 4 0 Tube Death domain PAS_8 PF13188.7 gi|219853190|ref|YP_002467622.1| - 0.16 12.0 0.4 27 4.9 0.0 3.0 2 0 0 2 2 2 0 PAS domain EF-hand_8 PF13833.6 gi|219853190|ref|YP_002467622.1| - 0.18 11.6 4.4 0.51 10.2 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair Poly_export PF02563.16 gi|219853190|ref|YP_002467622.1| - 8.1 6.7 10.2 11 6.4 0.2 4.4 3 1 1 4 4 4 0 Polysaccharide biosynthesis/export protein Beta-lactamase PF00144.24 gi|219853191|ref|YP_002467623.1| - 9.3e-58 196.0 0.4 1.4e-57 195.5 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF3471 PF11954.8 gi|219853191|ref|YP_002467623.1| - 3.3e-09 37.2 0.1 8.7e-09 35.8 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3471) MCPsignal PF00015.21 gi|219853192|ref|YP_002467624.1| - 4.7e-41 140.5 20.9 4.7e-41 140.5 20.9 6.1 2 1 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|219853192|ref|YP_002467624.1| - 5.2e-15 55.6 0.0 1.5e-14 54.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|219853192|ref|YP_002467624.1| - 1.5e-08 34.8 0.0 5.2e-08 33.1 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|219853192|ref|YP_002467624.1| - 3.1e-07 30.4 0.0 7.1e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold MnmE_helical PF12631.7 gi|219853192|ref|YP_002467624.1| - 3.1e-06 27.5 6.2 0.0013 18.9 1.7 4.1 1 1 1 3 3 3 1 MnmE helical domain DUF948 PF06103.11 gi|219853192|ref|YP_002467624.1| - 5.3e-05 23.4 35.2 2.8 8.3 0.9 8.4 4 2 2 7 7 7 3 Bacterial protein of unknown function (DUF948) Med2 PF11214.8 gi|219853192|ref|YP_002467624.1| - 0.00046 20.3 0.1 1.2 9.3 0.1 5.0 4 2 0 4 4 4 1 Mediator complex subunit 2 PAS_8 PF13188.7 gi|219853192|ref|YP_002467624.1| - 0.11 12.5 0.0 0.31 11.1 0.0 1.8 1 0 0 1 1 1 0 PAS domain Ferritin PF00210.24 gi|219853192|ref|YP_002467624.1| - 0.15 12.0 1.1 0.52 10.2 0.2 2.4 2 0 0 2 2 2 0 Ferritin-like domain Baculo_PEP_C PF04513.12 gi|219853192|ref|YP_002467624.1| - 0.26 11.3 35.5 0.16 12.0 1.0 5.7 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|219853192|ref|YP_002467624.1| - 0.61 10.2 11.6 17 5.5 0.6 5.4 4 1 2 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.12 gi|219853192|ref|YP_002467624.1| - 0.87 9.6 28.7 1.2 9.1 2.8 6.1 5 2 0 6 6 6 0 Laminin Domain II Serine_rich PF08824.10 gi|219853192|ref|YP_002467624.1| - 0.92 9.5 4.6 11 6.0 0.2 3.2 3 1 0 3 3 3 0 Serine rich protein interaction domain Spc7 PF08317.11 gi|219853192|ref|YP_002467624.1| - 1.2 7.9 6.3 2.8 6.7 0.3 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein DASH_Dad4 PF08650.10 gi|219853192|ref|YP_002467624.1| - 1.2 9.1 11.9 2 8.5 0.1 4.9 4 0 0 4 4 4 0 DASH complex subunit Dad4 DUF745 PF05335.13 gi|219853192|ref|YP_002467624.1| - 1.6 8.4 33.4 0.2 11.4 7.3 4.2 3 1 1 4 4 3 0 Protein of unknown function (DUF745) I_LWEQ PF01608.17 gi|219853192|ref|YP_002467624.1| - 2 8.7 22.3 0.03 14.6 8.1 3.3 2 1 0 2 2 2 0 I/LWEQ domain DUF1664 PF07889.12 gi|219853192|ref|YP_002467624.1| - 6.7 6.8 17.9 12 6.0 0.9 5.2 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|219853192|ref|YP_002467624.1| - 6.9 6.5 5.8 19 5.1 0.3 3.8 4 1 1 5 5 5 0 Sec34-like family DASH_Duo1 PF08651.10 gi|219853192|ref|YP_002467624.1| - 7 6.5 11.6 13 5.6 0.1 5.6 7 0 0 7 7 7 0 DASH complex subunit Duo1 CheW PF01584.19 gi|219853193|ref|YP_002467625.1| - 6.5e-28 97.1 0.8 7.7e-28 96.8 0.8 1.1 1 0 0 1 1 1 1 CheW-like domain Rhodanese PF00581.20 gi|219853193|ref|YP_002467625.1| - 0.16 12.5 0.1 0.31 11.6 0.1 1.5 1 0 0 1 1 1 0 Rhodanese-like domain HxlR PF01638.17 gi|219853195|ref|YP_002467627.1| - 6.1e-20 70.9 0.0 7.1e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|219853195|ref|YP_002467627.1| - 0.0031 17.7 0.0 0.004 17.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4393 PF14337.6 gi|219853195|ref|YP_002467627.1| - 0.02 14.7 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_5 PF01022.20 gi|219853195|ref|YP_002467627.1| - 0.041 13.8 0.1 0.69 9.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|219853195|ref|YP_002467627.1| - 0.051 13.6 0.0 0.088 12.9 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|219853195|ref|YP_002467627.1| - 0.062 13.3 0.0 0.083 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 gi|219853195|ref|YP_002467627.1| - 0.16 11.7 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain MarR PF01047.22 gi|219853195|ref|YP_002467627.1| - 0.17 11.8 0.0 0.34 10.9 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|219853195|ref|YP_002467627.1| - 0.29 10.8 0.0 0.35 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) E1-E2_ATPase PF00122.20 gi|219853196|ref|YP_002467628.1| - 3.4e-52 176.6 0.5 3.4e-52 176.6 0.5 2.8 3 0 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|219853196|ref|YP_002467628.1| - 8.2e-46 156.9 3.3 1.7e-45 155.9 3.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|219853196|ref|YP_002467628.1| - 1.1e-05 25.9 0.1 4.5e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|219853196|ref|YP_002467628.1| - 0.00019 21.2 2.3 0.005 16.6 0.9 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|219853196|ref|YP_002467628.1| - 0.088 12.9 0.0 0.55 10.4 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Peptidase_M23 PF01551.22 gi|219853196|ref|YP_002467628.1| - 0.13 12.5 0.0 0.47 10.7 0.0 2.1 1 0 0 1 1 1 0 Peptidase family M23 HxlR PF01638.17 gi|219853197|ref|YP_002467629.1| - 1.2e-25 89.2 0.3 1.3e-25 89.0 0.3 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Radical_SAM PF04055.21 gi|219853198|ref|YP_002467630.1| - 1.1e-13 51.9 1.4 1.7e-13 51.3 0.6 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|219853198|ref|YP_002467630.1| - 7.7e-06 26.3 6.0 7.7e-06 26.3 6.0 2.4 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|219853198|ref|YP_002467630.1| - 0.00023 21.3 1.0 0.00073 19.7 0.7 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|219853198|ref|YP_002467630.1| - 0.00028 21.1 0.8 0.001 19.3 0.6 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF383 PF04063.14 gi|219853199|ref|YP_002467631.1| - 0.0061 16.2 0.0 0.0069 16.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF383) Met_10 PF02475.16 gi|219853201|ref|YP_002467633.1| - 7.3e-44 149.9 0.0 9.8e-44 149.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|219853201|ref|YP_002467633.1| - 1.1e-10 41.2 0.0 2.2e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|219853201|ref|YP_002467633.1| - 1.1e-06 28.3 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|219853201|ref|YP_002467633.1| - 3.2e-06 27.7 0.0 5.3e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|219853201|ref|YP_002467633.1| - 4.7e-06 26.2 0.0 6.6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|219853201|ref|YP_002467633.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltrans_SAM PF10672.9 gi|219853201|ref|YP_002467633.1| - 0.00017 20.9 0.0 0.00024 20.3 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_31 PF13847.6 gi|219853201|ref|YP_002467633.1| - 0.00024 20.9 0.0 0.00034 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|219853201|ref|YP_002467633.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|219853201|ref|YP_002467633.1| - 0.0034 17.1 0.0 0.0052 16.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F tRNA_U5-meth_tr PF05958.11 gi|219853201|ref|YP_002467633.1| - 0.0053 15.8 0.0 0.0079 15.2 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.12 gi|219853201|ref|YP_002467633.1| - 0.041 14.5 0.0 0.083 13.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|219853201|ref|YP_002467633.1| - 0.06 13.0 0.0 0.08 12.6 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase TRM PF02005.16 gi|219853201|ref|YP_002467633.1| - 0.19 10.9 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase HMG-CoA_red PF00368.18 gi|219853202|ref|YP_002467634.1| - 2.7e-124 414.9 13.3 3.1e-124 414.7 13.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Urease_beta PF00699.20 gi|219853202|ref|YP_002467634.1| - 0.018 15.1 0.0 0.037 14.1 0.0 1.7 1 0 0 1 1 1 0 Urease beta subunit Acetyltransf_1 PF00583.25 gi|219853203|ref|YP_002467635.1| - 7.5e-16 58.4 0.1 9e-16 58.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|219853203|ref|YP_002467635.1| - 8.3e-16 58.1 0.0 1.1e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|219853203|ref|YP_002467635.1| - 9.1e-14 51.7 1.3 1.3e-13 51.2 1.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|219853203|ref|YP_002467635.1| - 3.1e-06 27.0 0.1 4.2e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|219853203|ref|YP_002467635.1| - 0.034 13.8 0.1 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF1015 PF06245.11 gi|219853204|ref|YP_002467636.1| - 9.4e-107 357.3 0.0 1.1e-106 357.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) Semialdhyde_dh PF01118.24 gi|219853205|ref|YP_002467637.1| - 2.4e-31 108.7 0.0 4.1e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|219853205|ref|YP_002467637.1| - 2.3e-16 60.4 0.0 3.7e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|219853205|ref|YP_002467637.1| - 3.4e-06 27.9 0.0 6.8e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|219853205|ref|YP_002467637.1| - 0.013 16.1 0.0 0.026 15.1 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|219853205|ref|YP_002467637.1| - 0.026 14.0 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|219853205|ref|YP_002467637.1| - 0.026 14.8 0.1 0.069 13.4 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|219853205|ref|YP_002467637.1| - 0.036 14.2 0.0 0.076 13.1 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.6 gi|219853205|ref|YP_002467637.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain RmlD_sub_bind PF04321.17 gi|219853205|ref|YP_002467637.1| - 0.16 11.0 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain TH1 PF04858.13 gi|219853205|ref|YP_002467637.1| - 0.24 10.0 0.0 0.3 9.7 0.0 1.1 1 0 0 1 1 1 0 TH1 protein CBS PF00571.28 gi|219853206|ref|YP_002467638.1| - 4.2e-27 94.3 5.8 3.8e-15 56.1 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF4549 PF15082.6 gi|219853206|ref|YP_002467638.1| - 0.091 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4549) ArgJ PF01960.18 gi|219853207|ref|YP_002467639.1| - 1.3e-123 412.5 5.1 1.5e-123 412.2 5.1 1.0 1 0 0 1 1 1 1 ArgJ family RVT_3 PF13456.6 gi|219853207|ref|YP_002467639.1| - 0.027 14.3 0.7 0.34 10.7 0.0 2.8 3 1 0 3 3 3 0 Reverse transcriptase-like CBM_35 PF16990.5 gi|219853207|ref|YP_002467639.1| - 0.028 14.7 0.1 0.099 12.9 0.0 1.9 2 0 0 2 2 2 0 Carbohydrate binding module (family 35) AA_kinase PF00696.28 gi|219853208|ref|YP_002467640.1| - 4.1e-43 147.7 6.7 4.7e-43 147.5 6.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family Bactofilin PF04519.13 gi|219853210|ref|YP_002467642.1| - 3.5e-15 56.1 8.6 1.5e-09 38.0 0.5 2.9 2 1 0 2 2 2 2 Polymer-forming cytoskeletal DUF3494 PF11999.8 gi|219853210|ref|YP_002467642.1| - 0.006 16.2 1.9 1.6 8.4 0.0 3.1 2 1 0 3 3 3 1 Protein of unknown function (DUF3494) Hexapep PF00132.24 gi|219853210|ref|YP_002467642.1| - 0.014 15.1 16.7 0.5 10.2 0.0 6.7 7 1 0 7 7 7 0 Bacterial transferase hexapeptide (six repeats) Phage_spike PF18715.1 gi|219853210|ref|YP_002467642.1| - 4.2 7.5 7.7 56 3.9 0.2 4.1 4 0 0 4 4 4 0 Phage spike trimer PhosphMutase PF10143.9 gi|219853211|ref|YP_002467643.1| - 1.1e-47 162.0 0.0 1.6e-47 161.5 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|219853211|ref|YP_002467643.1| - 2.4e-39 135.2 0.0 2.8e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|219853211|ref|YP_002467643.1| - 0.0098 15.5 0.0 0.048 13.2 0.0 2.1 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Ribosomal_S3Ae PF01015.18 gi|219853212|ref|YP_002467644.1| - 5.6e-58 195.9 1.0 6.7e-58 195.6 1.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family tRNA_bind_4 PF18490.1 gi|219853213|ref|YP_002467645.1| - 1.2e-48 164.9 0.0 1.7e-48 164.4 0.0 1.2 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|219853213|ref|YP_002467645.1| - 8.2e-10 38.9 0.0 1.3e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Hyd_WA PF06462.12 gi|219853213|ref|YP_002467645.1| - 0.046 13.7 0.1 0.19 11.7 0.1 2.1 1 0 0 1 1 1 0 Propeller Pcc1 PF09341.10 gi|219853214|ref|YP_002467646.1| - 0.051 13.7 0.0 0.059 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 DHHA1 PF02272.19 gi|219853215|ref|YP_002467647.1| - 5.7e-09 36.5 0.0 1.3e-08 35.4 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|219853215|ref|YP_002467647.1| - 0.0012 19.0 0.0 0.0027 17.9 0.0 1.6 1 0 0 1 1 1 1 DHH family LisH_2 PF16045.5 gi|219853215|ref|YP_002467647.1| - 0.18 10.9 0.0 0.37 9.9 0.0 1.5 1 0 0 1 1 1 0 LisH Ribosomal_S13_N PF08069.12 gi|219853216|ref|YP_002467648.1| - 1.2e-24 86.1 0.2 2.3e-24 85.2 0.2 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|219853216|ref|YP_002467648.1| - 8e-12 45.2 1.1 1e-11 44.9 0.3 1.6 2 0 0 2 2 2 1 Ribosomal protein S15 DUF3239 PF11580.8 gi|219853216|ref|YP_002467648.1| - 0.067 13.5 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3239) DUF2072 PF09845.9 gi|219853217|ref|YP_002467649.1| - 9.8e-42 142.4 0.0 1.1e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein HypA PF01155.19 gi|219853217|ref|YP_002467649.1| - 0.024 14.6 0.3 0.035 14.1 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1451 PF07295.11 gi|219853217|ref|YP_002467649.1| - 0.044 13.8 1.3 0.073 13.1 1.3 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|219853217|ref|YP_002467649.1| - 0.051 13.7 3.4 0.14 12.3 3.4 1.7 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|219853217|ref|YP_002467649.1| - 2.3 8.2 4.8 33 4.5 0.6 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF2073 PF09846.9 gi|219853218|ref|YP_002467650.1| - 1.9e-48 162.7 0.2 2.2e-48 162.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|219853219|ref|YP_002467651.1| - 1.1e-14 54.5 0.0 1.4e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|219853219|ref|YP_002467651.1| - 2.4e-10 40.3 0.3 0.0004 20.0 0.1 3.0 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|219853219|ref|YP_002467651.1| - 6.1e-07 29.0 0.0 0.0014 18.1 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|219853219|ref|YP_002467651.1| - 2.2e-05 24.4 0.0 0.16 11.8 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|219853219|ref|YP_002467651.1| - 2.3e-05 24.0 0.2 0.00031 20.3 0.2 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|219853219|ref|YP_002467651.1| - 0.00024 20.6 0.0 0.24 10.8 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|219853219|ref|YP_002467651.1| - 0.00048 20.1 0.0 0.001 19.0 0.0 1.5 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA PF00004.29 gi|219853219|ref|YP_002467651.1| - 0.0034 17.8 0.0 0.037 14.4 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 gi|219853219|ref|YP_002467651.1| - 0.0035 17.5 0.0 0.16 12.2 0.0 2.2 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|219853219|ref|YP_002467651.1| - 0.0079 16.8 0.0 0.022 15.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|219853219|ref|YP_002467651.1| - 0.01 15.7 0.0 0.016 15.1 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|219853219|ref|YP_002467651.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|219853219|ref|YP_002467651.1| - 0.014 14.8 0.0 0.046 13.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein Dynamin_N PF00350.23 gi|219853219|ref|YP_002467651.1| - 0.014 15.5 0.0 3.1 7.8 0.0 2.2 1 1 1 2 2 2 0 Dynamin family MeaB PF03308.16 gi|219853219|ref|YP_002467651.1| - 0.033 13.2 0.0 1.7 7.5 0.0 2.7 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|219853219|ref|YP_002467651.1| - 0.034 14.6 0.0 0.05 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|219853219|ref|YP_002467651.1| - 0.035 14.0 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Septin PF00735.18 gi|219853219|ref|YP_002467651.1| - 0.037 13.3 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_16 PF13191.6 gi|219853219|ref|YP_002467651.1| - 0.073 13.4 0.0 0.091 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Parvo_NS1 PF01057.17 gi|219853219|ref|YP_002467651.1| - 0.08 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MnmE_helical PF12631.7 gi|219853219|ref|YP_002467651.1| - 0.096 12.8 0.0 0.1 12.7 0.0 1.3 1 1 0 1 1 1 0 MnmE helical domain RuvB_N PF05496.12 gi|219853219|ref|YP_002467651.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|219853219|ref|YP_002467651.1| - 0.14 11.8 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|219853219|ref|YP_002467651.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|219853219|ref|YP_002467651.1| - 0.16 11.5 0.0 1.9 8.0 0.0 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|219853219|ref|YP_002467651.1| - 0.17 12.4 0.0 0.23 12.0 0.0 1.4 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|219853219|ref|YP_002467651.1| - 0.18 11.6 0.0 12 5.6 0.1 2.8 2 1 0 3 3 3 0 Conserved hypothetical ATP binding protein CBS PF00571.28 gi|219853220|ref|YP_002467652.1| - 1e-23 83.5 3.9 7.5e-17 61.5 2.0 2.5 2 0 0 2 2 2 2 CBS domain Cas_Csx8 PF09657.10 gi|219853220|ref|YP_002467652.1| - 0.22 10.5 0.4 10 5.0 0.1 2.0 1 1 1 2 2 2 0 CRISPR-associated protein Csx8 (Cas_Csx8) CBS PF00571.28 gi|219853221|ref|YP_002467653.1| - 6.4e-33 113.0 10.4 7.3e-13 48.8 0.4 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|219853222|ref|YP_002467654.1| - 4.1e-49 164.9 8.2 1.1e-12 48.2 0.1 4.4 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|219853223|ref|YP_002467655.1| - 1.6e-44 150.2 14.5 7.4e-16 58.3 1.0 4.4 5 0 0 5 5 5 4 CBS domain CBS PF00571.28 gi|219853224|ref|YP_002467656.1| - 6.9e-28 96.9 11.9 3.7e-09 36.9 0.4 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.14 gi|219853224|ref|YP_002467656.1| - 0.0027 18.1 0.3 0.3 11.6 0.1 3.5 4 0 0 4 4 4 1 Ribosomal protein L9, C-terminal domain PKD PF00801.20 gi|219853225|ref|YP_002467657.1| - 1.4e-116 380.5 166.5 2.3e-12 46.6 5.6 15.0 15 0 0 15 15 14 13 PKD domain PKD_3 PF16820.5 gi|219853225|ref|YP_002467657.1| - 1.6e-21 75.8 46.2 0.00081 19.1 0.0 14.0 14 0 0 14 14 14 7 PKD-like domain DUF5010_C PF18099.1 gi|219853225|ref|YP_002467657.1| - 1.2e-06 28.6 0.1 1.2e-06 28.6 0.1 3.4 3 0 0 3 3 3 1 DUF5010 C-terminal domain ChitinaseA_N PF08329.10 gi|219853225|ref|YP_002467657.1| - 3.7e-05 23.4 25.1 3.9 7.1 0.0 10.9 11 2 2 13 13 13 2 Chitinase A, N-terminal domain Y_Y_Y PF07495.13 gi|219853225|ref|YP_002467657.1| - 5.9e-05 22.9 29.4 7.3 6.6 0.1 10.0 12 0 0 12 12 12 3 Y_Y_Y domain DUF5011 PF16403.5 gi|219853225|ref|YP_002467657.1| - 0.0094 16.1 1.1 0.0094 16.1 1.1 11.5 14 0 0 14 14 14 1 Domain of unknown function (DUF5011) TcfC PF16967.5 gi|219853225|ref|YP_002467657.1| - 0.64 9.5 7.5 1.5 8.3 0.2 5.1 6 0 0 6 6 6 0 E-set like domain DUF4625 PF15418.6 gi|219853225|ref|YP_002467657.1| - 1.3 9.3 3.7 19 5.5 0.1 5.0 7 0 0 7 7 7 0 Domain of unknown function (DUF4625) DUF3324 PF11797.8 gi|219853225|ref|YP_002467657.1| - 3.3 7.7 22.5 4.4 7.3 0.1 8.0 7 2 0 8 8 8 0 Protein of unknown function C-terminal (DUF3324) Cadherin PF00028.17 gi|219853225|ref|YP_002467657.1| - 4.4 7.8 20.2 9.5 6.7 0.1 7.7 8 1 0 8 8 7 0 Cadherin domain VID27_PH PF17747.1 gi|219853225|ref|YP_002467657.1| - 7.7 6.8 5.5 21 5.4 0.0 4.5 6 0 0 6 6 6 0 VID27 PH-like domain CBM_6 PF03422.15 gi|219853226|ref|YP_002467658.1| - 1.6e-22 80.2 3.9 5.6e-22 78.4 3.9 2.1 1 1 0 1 1 1 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|219853226|ref|YP_002467658.1| - 1.4e-09 38.1 0.3 3.5e-09 36.8 0.3 1.7 1 0 0 1 1 1 1 DUF5010 C-terminal domain Dockerin_1 PF00404.18 gi|219853226|ref|YP_002467658.1| - 6.1e-07 29.5 0.6 1.9e-06 28.0 0.6 1.9 1 0 0 1 1 1 1 Dockerin type I domain Peptidase_C1 PF00112.23 gi|219853226|ref|YP_002467658.1| - 1.6e-05 25.2 0.3 0.0063 16.6 0.1 2.2 2 0 0 2 2 2 2 Papain family cysteine protease EF-hand_1 PF00036.32 gi|219853226|ref|YP_002467658.1| - 0.00028 20.2 5.6 0.026 14.1 0.8 2.7 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.6 gi|219853226|ref|YP_002467658.1| - 0.001 18.8 3.3 0.11 12.5 0.5 2.6 2 0 0 2 2 2 2 EF-hand domain CBM_35 PF16990.5 gi|219853226|ref|YP_002467658.1| - 0.0029 17.8 0.2 0.0076 16.5 0.2 1.7 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) EF-hand_8 PF13833.6 gi|219853226|ref|YP_002467658.1| - 0.056 13.3 4.2 0.49 10.3 0.4 2.5 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.6 gi|219853226|ref|YP_002467658.1| - 0.42 11.1 2.6 3.4 8.2 2.6 2.4 1 1 0 1 1 1 0 EF-hand domain pair DUF2298 PF10060.9 gi|219853227|ref|YP_002467659.1| - 5.6e-95 318.9 41.0 1e-94 318.1 41.0 1.4 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Tubulin PF00091.25 gi|219853228|ref|YP_002467660.1| - 2.1e-05 24.8 0.0 0.00075 19.8 0.0 2.3 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|219853228|ref|YP_002467660.1| - 0.004 16.4 0.0 0.34 10.0 0.0 2.4 2 0 0 2 2 2 2 Tubulin like PGK PF00162.19 gi|219853229|ref|YP_002467661.1| - 6.5e-110 367.6 0.2 7.4e-110 367.4 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase TFA2_Winged_2 PF18121.1 gi|219853229|ref|YP_002467661.1| - 0.13 12.0 0.1 5.7 6.7 0.0 3.2 4 0 0 4 4 4 0 TFA2 Winged helix domain 2 ATP-synt_D PF01813.17 gi|219853230|ref|YP_002467662.1| - 1.1e-55 188.5 10.7 1.2e-55 188.4 10.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Snapin_Pallidin PF14712.6 gi|219853230|ref|YP_002467662.1| - 0.032 14.6 0.9 0.17 12.3 0.1 2.5 2 1 0 2 2 2 0 Snapin/Pallidin CCDC92 PF14916.6 gi|219853230|ref|YP_002467662.1| - 0.034 13.9 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 Coiled-coil domain of unknown function ATP-synt_ab PF00006.25 gi|219853231|ref|YP_002467663.1| - 6.3e-66 222.1 0.0 8.7e-66 221.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|219853231|ref|YP_002467663.1| - 3.1e-10 40.4 0.9 3.1e-10 40.4 0.9 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt_ab PF00006.25 gi|219853232|ref|YP_002467664.1| - 1.1e-95 319.3 0.0 2.4e-95 318.2 0.0 1.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|219853232|ref|YP_002467664.1| - 1.1e-41 141.5 0.1 2.3e-41 140.4 0.1 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|219853232|ref|YP_002467664.1| - 3.5e-13 49.9 0.8 1e-12 48.4 0.8 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.22 gi|219853232|ref|YP_002467664.1| - 0.0042 17.3 0.1 2.3 8.5 0.1 2.6 2 0 0 2 2 2 2 Peptidase family M23 AAA_22 PF13401.6 gi|219853232|ref|YP_002467664.1| - 0.033 14.5 0.0 0.082 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.17 gi|219853233|ref|YP_002467665.1| - 1.7e-17 63.5 0.0 1.8e-17 63.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|219853234|ref|YP_002467666.1| - 9.6e-72 242.3 0.2 1.1e-71 242.1 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.11 gi|219853234|ref|YP_002467666.1| - 0.0029 18.1 1.0 1.1 9.9 0.0 3.1 3 0 0 3 3 3 2 MerR, DNA binding Xol-1_N PF09108.10 gi|219853234|ref|YP_002467666.1| - 0.012 15.5 0.1 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Switch protein XOL-1, N-terminal HTH_38 PF13936.6 gi|219853234|ref|YP_002467666.1| - 0.15 11.8 0.1 6.3 6.7 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain vATP-synt_E PF01991.18 gi|219853235|ref|YP_002467667.1| - 1.8e-12 47.1 5.2 9.1e-12 44.8 5.2 1.8 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_C PF00137.21 gi|219853236|ref|YP_002467668.1| - 3.1e-15 56.3 12.7 3.1e-15 56.3 12.7 1.7 2 0 0 2 2 2 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|219853237|ref|YP_002467669.1| - 1.4e-31 109.2 0.3 2.9e-18 65.3 0.0 2.5 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family FlxA PF14282.6 gi|219853237|ref|YP_002467669.1| - 0.049 13.6 0.2 0.11 12.5 0.2 1.5 1 0 0 1 1 1 0 FlxA-like protein TolA_bind_tri PF16331.5 gi|219853237|ref|YP_002467669.1| - 0.16 12.0 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 TolA binding protein trimerisation DUF3584 PF12128.8 gi|219853237|ref|YP_002467669.1| - 0.19 9.2 3.0 0.07 10.6 0.4 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Phage_GP20 PF06810.11 gi|219853237|ref|YP_002467669.1| - 0.32 10.8 1.1 0.59 9.9 0.1 1.8 2 0 0 2 2 2 0 Phage minor structural protein GP20 Prefoldin PF02996.17 gi|219853237|ref|YP_002467669.1| - 0.39 10.6 2.0 0.24 11.3 0.2 1.6 2 0 0 2 2 2 0 Prefoldin subunit Prefoldin_2 PF01920.20 gi|219853237|ref|YP_002467669.1| - 0.89 9.5 2.6 2.1 8.3 0.4 2.1 2 0 0 2 2 2 0 Prefoldin subunit Seryl_tRNA_N PF02403.22 gi|219853237|ref|YP_002467669.1| - 1.9 8.7 3.4 44 4.4 0.0 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4140 PF13600.6 gi|219853237|ref|YP_002467669.1| - 4.6 7.7 5.3 10 6.6 0.1 3.0 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) V-ATPase_G_2 PF16999.5 gi|219853238|ref|YP_002467670.1| - 9.1e-06 26.0 9.1 1.1e-05 25.8 9.1 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|219853238|ref|YP_002467670.1| - 0.0027 17.8 7.7 0.0027 17.8 7.7 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|219853238|ref|YP_002467670.1| - 0.0045 16.4 10.0 0.0046 16.4 9.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) V-ATPase_G PF03179.15 gi|219853238|ref|YP_002467670.1| - 0.057 14.0 9.0 0.077 13.5 9.0 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF4239 PF14023.6 gi|219853238|ref|YP_002467670.1| - 0.36 10.5 1.9 0.48 10.1 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) DivIVA PF05103.13 gi|219853238|ref|YP_002467670.1| - 0.82 9.8 11.0 1.7 8.7 5.2 2.0 1 1 1 2 2 2 0 DivIVA protein Flot PF15975.5 gi|219853238|ref|YP_002467670.1| - 1.8 8.8 8.3 1.8 8.8 5.2 2.0 1 1 1 2 2 2 0 Flotillin Zn-ribbon_8 PF09723.10 gi|219853240|ref|YP_002467672.1| - 1.2e-05 25.3 2.8 1.7e-05 24.8 2.8 1.2 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|219853240|ref|YP_002467672.1| - 7.8e-05 22.6 1.1 8e-05 22.6 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|219853240|ref|YP_002467672.1| - 0.00014 21.8 0.5 0.00014 21.8 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|219853240|ref|YP_002467672.1| - 0.0031 17.5 0.7 0.0033 17.4 0.7 1.1 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|219853240|ref|YP_002467672.1| - 0.0071 16.3 3.3 0.89 9.6 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain FYDLN_acid PF09538.10 gi|219853240|ref|YP_002467672.1| - 0.0082 16.8 1.3 0.0082 16.8 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) Zn_ribbon_SprT PF17283.2 gi|219853240|ref|YP_002467672.1| - 0.015 15.2 1.7 0.45 10.5 0.2 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|219853240|ref|YP_002467672.1| - 0.028 13.8 2.2 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|219853240|ref|YP_002467672.1| - 0.032 14.2 1.9 0.059 13.4 1.9 1.4 1 1 0 1 1 1 0 Rubredoxin TFIIS_C PF01096.18 gi|219853240|ref|YP_002467672.1| - 0.034 14.0 4.9 0.58 10.0 0.9 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|219853240|ref|YP_002467672.1| - 0.035 13.8 1.6 0.048 13.3 1.6 1.3 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Zn_Tnp_IS91 PF14319.6 gi|219853240|ref|YP_002467672.1| - 0.039 14.0 0.9 0.052 13.6 0.9 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-HYPF PF07503.12 gi|219853240|ref|YP_002467672.1| - 0.04 13.7 3.1 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 HypF finger zinc_ribbon_4 PF13717.6 gi|219853240|ref|YP_002467672.1| - 0.041 13.8 3.7 0.56 10.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|219853240|ref|YP_002467672.1| - 0.042 13.4 4.2 2.1 7.9 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|219853240|ref|YP_002467672.1| - 0.046 13.8 6.1 0.14 12.3 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CcmH PF03918.14 gi|219853240|ref|YP_002467672.1| - 0.062 12.6 0.1 0.062 12.6 0.1 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Zn_Tnp_IS1 PF03811.13 gi|219853240|ref|YP_002467672.1| - 0.074 12.8 4.2 0.6 9.9 0.6 2.2 2 0 0 2 2 2 0 InsA N-terminal domain XPA_N PF01286.18 gi|219853240|ref|YP_002467672.1| - 0.079 13.0 3.6 3 8.0 0.2 2.1 2 0 0 2 2 2 0 XPA protein N-terminal DUF35_N PF12172.8 gi|219853240|ref|YP_002467672.1| - 0.082 12.8 2.8 5.4 7.0 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|219853240|ref|YP_002467672.1| - 0.15 11.8 5.7 0.74 9.6 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-FPG_IleRS PF06827.14 gi|219853240|ref|YP_002467672.1| - 0.26 11.2 5.6 1.5 8.8 5.6 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-C2H2_4 PF13894.6 gi|219853240|ref|YP_002467672.1| - 0.43 11.6 3.8 0.74 10.8 0.3 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger PhnA_Zn_Ribbon PF08274.12 gi|219853240|ref|YP_002467672.1| - 2.3 8.2 7.1 0.54 10.3 1.1 2.3 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.6 gi|219853240|ref|YP_002467672.1| - 4.4 7.1 7.3 1.1e+02 2.6 7.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain T2SSF PF00482.23 gi|219853241|ref|YP_002467673.1| - 2.2e-29 101.9 9.8 3.4e-17 62.6 3.2 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|219853242|ref|YP_002467674.1| - 1.1e-45 155.9 0.0 1.8e-45 155.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|219853242|ref|YP_002467674.1| - 0.0073 16.0 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|219853242|ref|YP_002467674.1| - 0.19 12.2 0.4 0.97 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|219853243|ref|YP_002467675.1| - 7.4e-10 38.6 2.6 4.5e-09 36.0 2.5 2.0 1 1 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|219853243|ref|YP_002467675.1| - 1e-05 24.9 0.0 0.047 12.9 0.0 2.1 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.6 gi|219853243|ref|YP_002467675.1| - 0.0003 20.4 0.0 0.0014 18.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|219853243|ref|YP_002467675.1| - 0.002 17.3 0.1 1.1 8.4 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein TsaE PF02367.17 gi|219853243|ref|YP_002467675.1| - 0.073 13.1 0.1 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|219853244|ref|YP_002467676.1| - 9.2e-51 172.4 0.0 1e-50 172.2 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|219853244|ref|YP_002467676.1| - 2.3e-06 27.3 0.0 3.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|219853244|ref|YP_002467676.1| - 3.6e-06 26.8 0.4 0.00014 21.6 0.4 2.3 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|219853244|ref|YP_002467676.1| - 5.4e-05 22.6 0.0 0.00015 21.2 0.0 1.7 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|219853244|ref|YP_002467676.1| - 0.00042 19.1 0.6 0.0022 16.7 0.6 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|219853244|ref|YP_002467676.1| - 0.00084 19.4 0.1 0.0027 17.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|219853244|ref|YP_002467676.1| - 0.0011 18.3 0.1 0.0018 17.6 0.1 1.2 1 0 0 1 1 1 1 Rad51 PAXNEB PF05625.11 gi|219853244|ref|YP_002467676.1| - 0.0024 17.1 1.1 1.4 7.9 0.1 2.1 1 1 0 2 2 2 2 PAXNEB protein RNA_helicase PF00910.22 gi|219853244|ref|YP_002467676.1| - 0.0035 17.7 0.4 1.9 8.9 0.0 2.3 1 1 0 2 2 2 2 RNA helicase RecA PF00154.21 gi|219853244|ref|YP_002467676.1| - 0.0067 15.9 0.0 0.0099 15.4 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|219853244|ref|YP_002467676.1| - 0.022 14.6 0.0 0.041 13.7 0.0 1.5 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_22 PF13401.6 gi|219853244|ref|YP_002467676.1| - 0.06 13.6 0.6 0.23 11.7 0.6 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|219853244|ref|YP_002467676.1| - 0.098 12.4 0.1 1 9.1 0.0 2.2 1 1 1 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|219853244|ref|YP_002467676.1| - 0.19 12.2 0.2 0.23 12.0 0.2 1.6 1 1 0 1 1 1 0 ABC transporter BofA PF07441.11 gi|219853245|ref|YP_002467677.1| - 7.3e-12 45.3 23.1 9.2e-12 45.0 23.1 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA BofA PF07441.11 gi|219853246|ref|YP_002467678.1| - 2.8e-14 53.1 15.3 3.2e-14 52.9 15.3 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA pEK499_p136 PF18736.1 gi|219853246|ref|YP_002467678.1| - 0.087 12.4 0.4 0.097 12.3 0.4 1.3 1 0 0 1 1 1 0 HEPN pEK499 p136 CBP_BcsG PF11658.8 gi|219853246|ref|YP_002467678.1| - 1.7 7.0 3.2 1.9 6.8 3.2 1.0 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG ATP-synt_J PF04911.12 gi|219853246|ref|YP_002467678.1| - 6 6.5 5.2 11 5.7 0.4 2.5 1 1 2 3 3 3 0 ATP synthase j chain PmbA_TldD PF01523.16 gi|219853247|ref|YP_002467679.1| - 2.3e-50 172.0 0.0 3e-50 171.6 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|219853248|ref|YP_002467680.1| - 2.2e-47 162.2 0.0 2.8e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|219853249|ref|YP_002467681.1| - 1.2e-34 119.7 2.5 2.1e-34 118.9 2.5 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|219853249|ref|YP_002467681.1| - 2.1e-30 106.0 0.0 5.7e-23 81.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|219853249|ref|YP_002467681.1| - 2.5e-16 59.7 0.1 8.2e-11 41.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|219853249|ref|YP_002467681.1| - 5.7e-16 58.7 0.1 4.2e-09 36.3 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|219853249|ref|YP_002467681.1| - 1e-11 45.0 0.0 8.5e-05 22.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|219853249|ref|YP_002467681.1| - 3.1e-09 36.7 0.5 6.5e-09 35.7 0.5 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|219853249|ref|YP_002467681.1| - 1.8e-07 30.5 0.0 0.025 13.7 0.0 2.7 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|219853249|ref|YP_002467681.1| - 3.1e-07 30.9 0.0 0.011 16.2 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|219853249|ref|YP_002467681.1| - 1.5e-06 28.4 0.0 0.0015 18.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|219853249|ref|YP_002467681.1| - 2.5e-05 24.1 0.0 0.034 13.9 0.1 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|219853249|ref|YP_002467681.1| - 5.9e-05 23.4 0.0 0.0019 18.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|219853249|ref|YP_002467681.1| - 7.5e-05 22.6 0.0 0.3 11.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|219853249|ref|YP_002467681.1| - 0.00012 22.5 0.1 0.00031 21.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|219853249|ref|YP_002467681.1| - 0.00024 20.7 0.0 0.00054 19.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|219853249|ref|YP_002467681.1| - 0.00032 20.9 0.0 0.19 11.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) PhoH PF02562.16 gi|219853249|ref|YP_002467681.1| - 0.0017 17.9 0.0 0.0033 16.9 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_16 PF13191.6 gi|219853249|ref|YP_002467681.1| - 0.0035 17.8 0.0 0.031 14.7 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|219853249|ref|YP_002467681.1| - 0.0056 16.4 0.2 0.023 14.4 0.1 2.1 3 0 0 3 3 2 1 AAA domain TIP49 PF06068.13 gi|219853249|ref|YP_002467681.1| - 0.0086 15.3 0.0 0.073 12.3 0.0 2.2 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|219853249|ref|YP_002467681.1| - 0.011 15.9 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|219853249|ref|YP_002467681.1| - 0.016 14.4 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_10 PF12846.7 gi|219853249|ref|YP_002467681.1| - 0.017 14.1 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Birna_VP4 PF01768.16 gi|219853249|ref|YP_002467681.1| - 0.024 14.4 0.8 0.73 9.6 0.1 2.5 2 0 0 2 2 2 0 Birnavirus VP4 protein DUF815 PF05673.13 gi|219853249|ref|YP_002467681.1| - 0.035 13.3 0.0 0.06 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|219853249|ref|YP_002467681.1| - 0.036 13.8 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|219853249|ref|YP_002467681.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|219853249|ref|YP_002467681.1| - 0.064 13.8 0.0 0.18 12.3 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Pribosyltran_N PF13793.6 gi|219853250|ref|YP_002467682.1| - 3.2e-20 72.2 0.0 9.2e-20 70.7 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|219853250|ref|YP_002467682.1| - 1.2e-10 41.2 0.8 3e-10 39.8 0.4 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|219853250|ref|YP_002467682.1| - 1.2e-09 38.5 0.2 2.3e-09 37.6 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|219853250|ref|YP_002467682.1| - 0.0045 16.4 0.1 0.0065 15.9 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase RTC PF01137.21 gi|219853251|ref|YP_002467683.1| - 4.9e-67 225.4 0.4 6e-67 225.1 0.4 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|219853251|ref|YP_002467683.1| - 5.1e-09 36.6 0.0 1.1e-08 35.6 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PIN_6 PF17146.4 gi|219853252|ref|YP_002467684.1| - 7.3e-18 64.9 0.0 1.1e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|219853252|ref|YP_002467684.1| - 0.00011 21.7 0.3 0.022 14.2 0.1 2.3 2 0 0 2 2 2 2 PINc domain ribonuclease zinc-ribbons_6 PF07191.12 gi|219853252|ref|YP_002467684.1| - 0.037 14.0 0.4 0.065 13.2 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbons C1_2 PF03107.16 gi|219853252|ref|YP_002467684.1| - 0.32 11.3 2.2 9.4 6.6 0.1 2.3 1 1 1 2 2 2 0 C1 domain Zn-ribbon_8 PF09723.10 gi|219853252|ref|YP_002467684.1| - 1.1 9.5 4.4 2.9 8.1 4.4 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Pribosyltran PF00156.27 gi|219853253|ref|YP_002467685.1| - 2.3e-16 59.7 0.0 2.8e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF5048 PF16467.5 gi|219853253|ref|YP_002467685.1| - 0.0045 17.2 0.0 0.0092 16.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5048) UPRTase PF14681.6 gi|219853253|ref|YP_002467685.1| - 0.0048 16.3 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_7 PF02796.15 gi|219853253|ref|YP_002467685.1| - 0.013 15.6 0.0 0.03 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|219853253|ref|YP_002467685.1| - 0.026 14.3 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain GerE PF00196.19 gi|219853253|ref|YP_002467685.1| - 0.031 13.8 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PRTase_2 PF15609.6 gi|219853253|ref|YP_002467685.1| - 0.032 13.7 0.0 0.066 12.7 0.0 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase HTH_40 PF14493.6 gi|219853253|ref|YP_002467685.1| - 0.065 13.7 0.0 0.21 12.1 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|219853253|ref|YP_002467685.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_20 PF12840.7 gi|219853253|ref|YP_002467685.1| - 0.17 12.0 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Cpn60_TCP1 PF00118.24 gi|219853254|ref|YP_002467686.1| - 5.1e-155 516.8 22.5 5.9e-155 516.6 22.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Response_reg PF00072.24 gi|219853255|ref|YP_002467687.1| - 4.1e-24 84.9 0.0 1.1e-23 83.5 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|219853255|ref|YP_002467687.1| - 1.6e-23 82.8 0.2 4.1e-18 65.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|219853255|ref|YP_002467687.1| - 2.2e-21 76.4 0.0 8.4e-21 74.6 0.0 2.0 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|219853255|ref|YP_002467687.1| - 2.1e-20 72.8 0.0 3.8e-10 39.8 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|219853255|ref|YP_002467687.1| - 1.1e-19 70.6 0.0 1.4e-08 35.0 0.0 3.0 3 0 0 3 3 2 2 PAS domain PAS_4 PF08448.10 gi|219853255|ref|YP_002467687.1| - 4.4e-18 65.5 0.1 2e-08 34.5 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|219853255|ref|YP_002467687.1| - 2.1e-08 34.0 0.0 0.0002 21.3 0.0 3.2 4 0 0 4 4 3 2 PAS domain PAS_11 PF14598.6 gi|219853255|ref|YP_002467687.1| - 1.3e-06 28.5 0.0 7.1e-05 22.9 0.0 2.8 3 0 0 3 3 3 1 PAS domain MLTR_LBD PF17765.1 gi|219853255|ref|YP_002467687.1| - 6.8e-05 23.0 0.0 0.00024 21.3 0.0 1.8 2 0 0 2 2 2 1 MmyB-like transcription regulator ligand binding domain HATPase_c_2 PF13581.6 gi|219853255|ref|YP_002467687.1| - 0.00029 20.8 0.0 0.0009 19.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|219853255|ref|YP_002467687.1| - 0.0062 16.7 0.0 0.033 14.3 0.0 2.3 2 1 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|219853255|ref|YP_002467687.1| - 0.022 14.8 0.1 0.05 13.7 0.1 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|219853255|ref|YP_002467687.1| - 0.075 12.9 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Flavin_Reduct PF01613.18 gi|219853256|ref|YP_002467688.1| - 2.6e-26 92.5 0.0 3.2e-26 92.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain FAD_binding_3 PF01494.19 gi|219853257|ref|YP_002467689.1| - 1.8e-18 67.0 0.0 3.2e-18 66.1 0.0 1.5 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|219853257|ref|YP_002467689.1| - 5.9e-14 51.8 0.0 6.3e-06 25.3 0.0 2.9 1 1 1 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|219853257|ref|YP_002467689.1| - 1.4e-11 44.5 0.3 3.7e-06 26.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|219853257|ref|YP_002467689.1| - 7e-10 38.6 0.8 8.1e-07 28.6 0.1 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|219853257|ref|YP_002467689.1| - 6.4e-09 35.4 0.0 8.8e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|219853257|ref|YP_002467689.1| - 2.1e-08 33.9 0.2 3.1e-08 33.4 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|219853257|ref|YP_002467689.1| - 4e-08 32.4 0.3 2.4e-07 29.8 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|219853257|ref|YP_002467689.1| - 7.4e-08 32.5 0.1 1.6e-07 31.4 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|219853257|ref|YP_002467689.1| - 6.3e-07 28.8 0.1 2.7e-06 26.8 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|219853257|ref|YP_002467689.1| - 9.1e-07 28.3 0.0 1.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|219853257|ref|YP_002467689.1| - 7.3e-06 25.3 0.4 7.9e-05 21.9 0.3 2.4 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|219853257|ref|YP_002467689.1| - 0.00015 22.3 0.0 0.031 14.8 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|219853257|ref|YP_002467689.1| - 0.00072 18.9 0.0 0.0035 16.7 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|219853257|ref|YP_002467689.1| - 0.0039 17.6 0.0 0.012 16.1 0.0 1.7 1 1 1 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|219853257|ref|YP_002467689.1| - 0.014 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|219853257|ref|YP_002467689.1| - 0.021 14.4 0.1 0.033 13.7 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|219853257|ref|YP_002467689.1| - 0.025 13.9 0.1 0.038 13.3 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|219853257|ref|YP_002467689.1| - 0.057 13.1 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|219853257|ref|YP_002467689.1| - 0.085 13.1 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain ABC2_membrane_2 PF12679.7 gi|219853258|ref|YP_002467690.1| - 2.1e-07 30.5 22.5 0.00064 19.1 22.5 3.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|219853258|ref|YP_002467690.1| - 0.00041 20.4 6.6 0.00041 20.4 6.6 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|219853258|ref|YP_002467690.1| - 0.00095 18.4 18.5 0.0016 17.6 14.8 2.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|219853258|ref|YP_002467690.1| - 0.011 15.2 11.2 0.1 12.1 1.2 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein Tom22 PF04281.13 gi|219853258|ref|YP_002467690.1| - 0.75 9.6 2.4 1.4 8.7 2.4 1.4 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 ABC_tran PF00005.27 gi|219853259|ref|YP_002467691.1| - 2.3e-29 102.7 0.0 5.2e-28 98.3 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|219853259|ref|YP_002467691.1| - 7.4e-13 49.0 0.8 8.1e-08 32.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|219853259|ref|YP_002467691.1| - 0.0051 17.3 0.1 0.0083 16.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|219853259|ref|YP_002467691.1| - 0.012 16.0 0.1 0.027 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|219853259|ref|YP_002467691.1| - 0.013 15.9 0.0 0.16 12.4 0.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|219853259|ref|YP_002467691.1| - 0.046 13.6 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|219853259|ref|YP_002467691.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|219853259|ref|YP_002467691.1| - 0.15 11.8 0.2 0.38 10.5 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|219853259|ref|YP_002467691.1| - 0.18 11.5 0.0 6.3 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.6 gi|219853259|ref|YP_002467691.1| - 0.21 10.2 0.0 4.2 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Multi_Drug_Res PF00893.19 gi|219853260|ref|YP_002467692.1| - 2.1e-14 53.9 0.2 3.1e-14 53.4 0.2 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein HisKA PF00512.25 gi|219853261|ref|YP_002467693.1| - 0.00094 19.2 0.5 0.0027 17.7 0.0 2.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|219853261|ref|YP_002467693.1| - 0.0019 17.9 1.6 0.0079 15.9 0.0 2.4 3 0 0 3 3 3 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|219853261|ref|YP_002467693.1| - 0.03 13.9 0.3 0.058 13.0 0.3 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|219853261|ref|YP_002467693.1| - 0.083 13.4 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FrhB_FdhB_C PF04432.13 gi|219853262|ref|YP_002467694.1| - 1.7e-33 115.7 0.0 2.8e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|219853262|ref|YP_002467694.1| - 1e-20 73.7 0.1 2e-20 72.7 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_6 PF12837.7 gi|219853262|ref|YP_002467694.1| - 7.1e-08 32.2 13.3 7.4e-06 25.8 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|219853262|ref|YP_002467694.1| - 8.8e-05 22.2 7.9 8.8e-05 22.2 7.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219853262|ref|YP_002467694.1| - 0.00011 22.3 15.4 0.00013 22.0 12.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219853262|ref|YP_002467694.1| - 0.00011 22.7 13.7 0.00011 22.7 13.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219853262|ref|YP_002467694.1| - 0.0013 18.8 14.3 0.0013 18.8 14.3 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219853262|ref|YP_002467694.1| - 0.002 18.1 3.1 0.002 18.1 3.1 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219853262|ref|YP_002467694.1| - 0.0096 16.4 3.7 0.0096 16.4 3.7 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219853262|ref|YP_002467694.1| - 0.32 12.0 20.4 0.91 10.5 15.2 2.9 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|219853262|ref|YP_002467694.1| - 2.1 8.6 21.1 10 6.4 16.5 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219853262|ref|YP_002467694.1| - 4.1 8.0 17.6 0.22 12.1 2.3 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219853262|ref|YP_002467694.1| - 6.3 7.7 11.5 0.99 10.3 1.6 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219853262|ref|YP_002467694.1| - 6.6 7.3 18.5 0.54 10.7 3.0 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219853262|ref|YP_002467694.1| - 9.4 7.4 27.2 0.61 11.1 8.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain GXGXG PF01493.19 gi|219853263|ref|YP_002467695.1| - 2.5e-37 128.3 8.4 3.1e-37 128.0 8.4 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|219853264|ref|YP_002467696.1| - 3e-135 451.1 0.2 3e-135 451.1 0.2 1.5 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|219853264|ref|YP_002467696.1| - 7.6e-15 55.1 0.1 3e-07 30.2 0.1 2.5 2 1 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|219853264|ref|YP_002467696.1| - 4.3e-10 39.2 10.2 7.2e-08 31.8 4.1 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_10 PF13237.6 gi|219853264|ref|YP_002467696.1| - 2.5e-09 37.1 16.0 7.4e-07 29.2 11.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain NMO PF03060.15 gi|219853264|ref|YP_002467696.1| - 9.7e-09 35.0 8.5 3.5e-08 33.2 7.1 2.3 2 1 1 3 3 3 1 Nitronate monooxygenase Fer4_7 PF12838.7 gi|219853264|ref|YP_002467696.1| - 1e-08 35.6 16.8 9.6e-07 29.3 12.7 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain IMPDH PF00478.25 gi|219853264|ref|YP_002467696.1| - 3.4e-08 32.9 4.8 2.8e-07 29.9 2.9 2.5 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.6 gi|219853264|ref|YP_002467696.1| - 1e-07 32.0 16.9 9e-07 29.0 12.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219853264|ref|YP_002467696.1| - 1.2e-07 32.6 10.6 0.00011 23.1 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|219853264|ref|YP_002467696.1| - 1.9e-07 30.6 23.1 4.3e-05 23.1 3.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219853264|ref|YP_002467696.1| - 8.5e-07 29.0 10.2 8.5e-07 29.0 10.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219853264|ref|YP_002467696.1| - 5.5e-06 26.8 8.4 0.13 12.9 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219853264|ref|YP_002467696.1| - 1.3e-05 25.0 24.6 6.8e-05 22.8 1.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219853264|ref|YP_002467696.1| - 4.4e-05 23.3 23.1 0.006 16.6 1.8 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|219853264|ref|YP_002467696.1| - 0.00029 20.2 4.4 0.0036 16.5 4.4 2.2 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|219853264|ref|YP_002467696.1| - 0.0005 19.6 0.5 0.001 18.6 0.5 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_8 PF13183.6 gi|219853264|ref|YP_002467696.1| - 0.0016 18.8 16.5 0.92 10.0 2.8 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain G3P_antiterm PF04309.12 gi|219853264|ref|YP_002467696.1| - 0.067 12.6 1.3 0.15 11.4 0.3 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 gi|219853264|ref|YP_002467696.1| - 0.12 11.4 1.4 0.31 10.1 1.4 1.7 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|219853264|ref|YP_002467696.1| - 0.17 11.0 0.1 0.34 10.0 0.1 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Fer4_4 PF12800.7 gi|219853264|ref|YP_002467696.1| - 0.2 12.2 19.6 2.1 9.1 1.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|219853264|ref|YP_002467696.1| - 2.6 8.8 17.3 1.2 10.0 11.2 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|219853264|ref|YP_002467696.1| - 5.1 8.0 17.8 4.4 8.2 2.6 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain GATase_2 PF00310.21 gi|219853265|ref|YP_002467697.1| - 1.8e-11 43.4 1.3 1.4e-09 37.2 1.3 2.2 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|219853265|ref|YP_002467697.1| - 1.5e-10 41.4 0.0 1e-08 35.5 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|219853265|ref|YP_002467697.1| - 8.3e-09 35.4 0.0 9.3e-07 28.8 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|219853265|ref|YP_002467697.1| - 0.17 10.7 0.0 1.6 7.6 0.0 2.1 1 1 1 2 2 2 0 Glutamine amidotransferases class-II Gln-synt_C PF00120.24 gi|219853266|ref|YP_002467698.1| - 2.4e-131 437.9 0.0 2.8e-131 437.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|219853266|ref|YP_002467698.1| - 1.5e-31 107.9 0.0 3.7e-31 106.7 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|219853266|ref|YP_002467698.1| - 0.031 14.1 0.0 0.18 11.6 0.0 2.1 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain PD40 PF07676.12 gi|219853266|ref|YP_002467698.1| - 0.16 12.0 0.2 0.44 10.6 0.2 1.8 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat DUF4346 PF14251.6 gi|219853267|ref|YP_002467699.1| - 6e-07 29.5 0.0 1.7e-06 28.1 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|219853267|ref|YP_002467699.1| - 0.019 14.6 0.0 0.19 11.3 0.0 2.2 1 1 0 1 1 1 0 Pterin binding enzyme DUF1685 PF07939.11 gi|219853267|ref|YP_002467699.1| - 0.059 13.1 0.1 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1685) PHP_C PF13263.6 gi|219853268|ref|YP_002467700.1| - 2e-17 62.7 1.6 3.5e-17 61.9 1.6 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|219853268|ref|YP_002467700.1| - 2.8e-11 44.0 0.1 3.2e-11 43.8 0.1 1.2 1 1 0 1 1 1 1 PHP domain PseudoU_synth_1 PF01416.20 gi|219853269|ref|YP_002467701.1| - 9.5e-25 87.2 0.0 1.5e-21 76.9 0.0 2.7 3 0 0 3 3 3 2 tRNA pseudouridine synthase CbtA PF09490.10 gi|219853270|ref|YP_002467702.1| - 0.037 13.8 0.3 0.058 13.2 0.3 1.3 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) RHIM PF12721.7 gi|219853270|ref|YP_002467702.1| - 0.62 10.6 0.1 0.62 10.6 0.1 2.3 2 0 0 2 2 2 0 RIP homotypic interaction motif TPP_enzyme_C PF02775.21 gi|219853271|ref|YP_002467703.1| - 1.1e-24 87.0 0.4 1.7e-24 86.4 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|219853271|ref|YP_002467703.1| - 0.005 16.1 0.5 0.011 15.0 0.3 1.5 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|219853272|ref|YP_002467704.1| - 2.4e-68 230.3 1.0 3e-68 230.0 1.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|219853272|ref|YP_002467704.1| - 6.8e-24 84.1 0.0 1.4e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|219853272|ref|YP_002467704.1| - 1.4e-08 34.7 0.0 4.4e-08 33.0 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain POR PF01558.18 gi|219853273|ref|YP_002467705.1| - 9.5e-34 117.0 0.3 1.3e-33 116.6 0.3 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF2178 PF09946.9 gi|219853273|ref|YP_002467705.1| - 0.039 14.1 0.1 0.06 13.5 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) Fer4 PF00037.27 gi|219853274|ref|YP_002467706.1| - 2.4e-14 52.5 13.3 8.4e-08 31.7 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|219853274|ref|YP_002467706.1| - 8.7e-09 36.2 9.1 0.00028 21.8 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|219853274|ref|YP_002467706.1| - 1.9e-08 33.9 11.5 0.00038 20.4 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219853274|ref|YP_002467706.1| - 3e-08 33.4 11.5 0.00038 20.4 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|219853274|ref|YP_002467706.1| - 1.3e-07 32.1 23.3 0.0012 19.4 3.2 2.1 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|219853274|ref|YP_002467706.1| - 8.8e-07 29.4 7.7 0.0014 19.2 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219853274|ref|YP_002467706.1| - 1e-06 28.8 20.8 2.3e-05 24.4 11.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219853274|ref|YP_002467706.1| - 5.5e-06 27.0 8.3 0.012 16.3 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_9 PF13187.6 gi|219853274|ref|YP_002467706.1| - 6.8e-06 26.1 10.6 0.00012 22.2 11.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219853274|ref|YP_002467706.1| - 7.9e-06 25.9 22.4 0.0007 19.7 12.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219853274|ref|YP_002467706.1| - 9.9e-06 25.9 5.6 0.037 14.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219853274|ref|YP_002467706.1| - 5e-05 23.8 9.3 0.0096 16.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|219853274|ref|YP_002467706.1| - 5.2e-05 23.4 12.6 0.037 14.5 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|219853274|ref|YP_002467706.1| - 0.37 11.7 13.4 0.59 11.0 2.7 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219853274|ref|YP_002467706.1| - 1.6 9.9 19.3 1.8 9.7 6.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain PBP_like_2 PF12849.7 gi|219853275|ref|YP_002467707.1| - 1.2e-22 80.9 2.2 1.6e-22 80.6 2.2 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|219853275|ref|YP_002467707.1| - 0.09 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 PBP superfamily domain HAMP PF00672.25 gi|219853276|ref|YP_002467708.1| - 3.8e-12 46.4 1.6 1e-11 45.0 0.1 2.4 2 1 0 2 2 2 1 HAMP domain 4HB_MCP_1 PF12729.7 gi|219853276|ref|YP_002467708.1| - 0.0053 16.3 0.8 0.0053 16.3 0.8 3.0 2 1 1 3 3 3 1 Four helix bundle sensory module for signal transduction DUF2149 PF09919.9 gi|219853276|ref|YP_002467708.1| - 0.025 14.8 2.9 0.15 12.3 0.5 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) SRTM1 PF15872.5 gi|219853276|ref|YP_002467708.1| - 0.047 13.8 0.1 0.32 11.2 0.1 2.2 2 0 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 TadF PF16964.5 gi|219853276|ref|YP_002467708.1| - 0.25 11.1 0.1 0.25 11.1 0.1 1.8 2 0 0 2 2 2 0 Putative tight adherence pilin protein F LapA_dom PF06305.11 gi|219853276|ref|YP_002467708.1| - 0.5 10.2 3.2 9 6.2 0.1 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Proton_antipo_M PF00361.20 gi|219853278|ref|YP_002467710.1| - 6.9e-52 176.5 26.7 6.9e-52 176.5 26.7 2.8 3 1 1 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|219853278|ref|YP_002467710.1| - 2.7e-09 36.9 2.2 2.7e-09 36.9 2.2 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdh PF00146.21 gi|219853279|ref|YP_002467711.1| - 1.6e-40 139.3 23.5 2.6e-40 138.6 23.5 1.3 1 1 0 1 1 1 1 NADH dehydrogenase Oxidored_q6 PF01058.22 gi|219853280|ref|YP_002467712.1| - 1e-28 99.8 1.1 1.2e-28 99.5 1.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_2 PF12797.7 gi|219853280|ref|YP_002467712.1| - 0.1 12.8 0.3 0.27 11.4 0.3 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain Complex1_30kDa PF00329.19 gi|219853281|ref|YP_002467713.1| - 4.2e-08 33.9 0.0 4.7e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BTRD1 PF17660.1 gi|219853281|ref|YP_002467713.1| - 0.0098 15.7 0.1 0.031 14.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial tandem repeat domain 1 Complex1_49kDa PF00346.19 gi|219853282|ref|YP_002467714.1| - 3.3e-60 203.5 0.0 1.6e-41 142.2 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|219853282|ref|YP_002467714.1| - 6.4e-18 64.9 0.3 1.9e-15 56.8 0.0 3.0 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Fer4_7 PF12838.7 gi|219853283|ref|YP_002467715.1| - 2.2e-10 41.0 36.4 9.9e-06 26.1 15.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|219853283|ref|YP_002467715.1| - 3.7e-10 39.2 11.3 7.6e-05 22.4 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219853283|ref|YP_002467715.1| - 1.3e-08 34.9 10.8 1.9e-08 34.3 10.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219853283|ref|YP_002467715.1| - 1.3e-08 34.8 12.4 0.00025 21.1 3.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219853283|ref|YP_002467715.1| - 4.3e-08 34.0 8.4 0.00085 20.2 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|219853283|ref|YP_002467715.1| - 3.5e-07 30.3 13.1 5.1e-07 29.8 13.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|219853283|ref|YP_002467715.1| - 1.5e-06 28.0 14.1 0.00096 19.1 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219853283|ref|YP_002467715.1| - 6.3e-06 26.0 11.6 0.0059 16.6 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|219853283|ref|YP_002467715.1| - 0.00011 22.6 10.8 0.0069 16.9 0.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|219853283|ref|YP_002467715.1| - 0.0011 19.8 4.8 0.38 11.6 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219853283|ref|YP_002467715.1| - 0.0034 17.8 14.2 0.1 13.1 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|219853283|ref|YP_002467715.1| - 0.011 16.5 13.0 0.67 10.7 2.2 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|219853283|ref|YP_002467715.1| - 0.28 11.4 12.1 0.83 9.9 5.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|219853283|ref|YP_002467715.1| - 0.32 11.6 16.5 0.23 12.0 4.3 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|219853283|ref|YP_002467715.1| - 6.2 7.6 14.9 0.5 11.0 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M20 PF01546.28 gi|219853284|ref|YP_002467716.1| - 1.8e-23 83.3 0.0 7.4e-23 81.3 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|219853284|ref|YP_002467716.1| - 3.7e-11 42.9 0.2 2.7e-10 40.1 0.0 2.2 2 0 0 2 2 2 1 Peptidase dimerisation domain N6_N4_Mtase PF01555.18 gi|219853285|ref|YP_002467717.1| - 1.6e-15 57.4 0.0 1.2e-10 41.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|219853285|ref|YP_002467717.1| - 4.4e-07 29.8 0.0 1.2e-05 25.1 0.0 2.3 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|219853285|ref|YP_002467717.1| - 0.0064 16.2 0.0 0.0098 15.6 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Met_10 PF02475.16 gi|219853285|ref|YP_002467717.1| - 0.0092 15.7 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein HEAT_2 PF13646.6 gi|219853286|ref|YP_002467718.1| - 1.1e-107 352.6 90.5 8.2e-22 77.4 3.4 11.2 4 3 9 14 14 14 14 HEAT repeats HEAT PF02985.22 gi|219853286|ref|YP_002467718.1| - 2e-55 180.0 27.5 0.00011 22.2 0.0 19.3 20 0 0 20 20 20 13 HEAT repeat HEAT_PBS PF03130.16 gi|219853286|ref|YP_002467718.1| - 1.2e-42 140.3 75.9 0.00076 19.9 0.2 18.2 19 0 0 19 19 19 11 PBS lyase HEAT-like repeat Arm PF00514.23 gi|219853286|ref|YP_002467718.1| - 1e-26 92.1 18.1 0.01 15.8 0.0 17.3 12 5 6 18 18 18 7 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|219853286|ref|YP_002467718.1| - 9.1e-26 89.9 47.7 0.0099 16.4 0.0 17.0 17 1 1 18 18 18 8 HEAT-like repeat Cnd1 PF12717.7 gi|219853286|ref|YP_002467718.1| - 6.4e-13 49.1 1.0 0.053 13.5 0.1 9.4 8 3 3 11 11 11 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|219853286|ref|YP_002467718.1| - 4.9e-05 22.1 0.3 0.35 9.4 0.0 5.1 5 2 1 6 6 6 1 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|219853286|ref|YP_002467718.1| - 0.0012 19.2 3.1 45 4.5 0.0 6.4 6 1 1 7 7 7 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain DUF4042 PF13251.6 gi|219853286|ref|YP_002467718.1| - 0.0059 16.3 2.0 11 5.7 0.0 5.2 5 2 2 7 7 7 1 Domain of unknown function (DUF4042) IFRD PF05004.13 gi|219853286|ref|YP_002467718.1| - 0.013 14.6 8.4 4 6.5 0.2 5.4 3 3 1 4 4 4 0 Interferon-related developmental regulator (IFRD) Aconitase_B_N PF11791.8 gi|219853286|ref|YP_002467718.1| - 0.026 14.6 5.1 31 4.6 0.0 6.0 6 2 0 7 7 7 0 Aconitate B N-terminal domain TPP_enzyme_C PF02775.21 gi|219853287|ref|YP_002467719.1| - 1e-09 38.3 0.0 6.9e-09 35.7 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|219853287|ref|YP_002467719.1| - 3.1e-07 30.2 0.0 5.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PALP PF00291.25 gi|219853288|ref|YP_002467720.1| - 4.8e-29 101.7 2.1 6e-29 101.4 2.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HcyBio PF01837.16 gi|219853289|ref|YP_002467721.1| - 1e-105 353.4 0.0 1.2e-105 353.2 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4 PF00037.27 gi|219853289|ref|YP_002467721.1| - 1.1e-08 34.5 14.8 3.9e-07 29.6 3.5 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219853289|ref|YP_002467721.1| - 2.2e-08 33.8 11.4 6.1e-06 26.1 2.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|219853289|ref|YP_002467721.1| - 1.7e-07 30.9 19.1 4.4e-06 26.5 4.7 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|219853289|ref|YP_002467721.1| - 8.6e-07 29.0 6.6 2e-05 24.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|219853289|ref|YP_002467721.1| - 2.4e-06 27.6 25.4 0.0002 21.4 2.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219853289|ref|YP_002467721.1| - 3.8e-06 27.4 11.5 0.002 18.7 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|219853289|ref|YP_002467721.1| - 3.2e-05 24.1 10.6 0.0026 18.1 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219853289|ref|YP_002467721.1| - 0.00027 21.1 13.7 0.0053 16.9 14.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|219853289|ref|YP_002467721.1| - 0.011 16.1 6.9 0.068 13.6 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219853289|ref|YP_002467721.1| - 0.019 15.9 13.5 0.29 12.1 3.6 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|219853289|ref|YP_002467721.1| - 0.024 15.2 3.8 0.024 15.2 3.8 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|219853289|ref|YP_002467721.1| - 0.024 15.3 9.9 0.032 15.0 1.6 3.1 4 0 0 4 4 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|219853289|ref|YP_002467721.1| - 0.042 14.4 9.0 0.28 11.8 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|219853289|ref|YP_002467721.1| - 0.095 13.7 18.6 0.16 13.0 7.6 3.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|219853289|ref|YP_002467721.1| - 0.13 12.5 11.8 0.81 9.9 11.8 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|219853289|ref|YP_002467721.1| - 0.77 9.9 6.8 0.13 12.4 0.6 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S FeS PF04060.13 gi|219853290|ref|YP_002467722.1| - 3.3e-08 33.0 3.8 7.3e-08 31.9 3.8 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|219853291|ref|YP_002467723.1| - 3.4e-11 43.0 0.0 4.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|219853291|ref|YP_002467723.1| - 0.0012 18.1 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|219853291|ref|YP_002467723.1| - 0.0022 18.4 0.0 0.033 14.6 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain PduV-EutP PF10662.9 gi|219853291|ref|YP_002467723.1| - 0.0031 17.3 0.0 0.086 12.6 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.6 gi|219853291|ref|YP_002467723.1| - 0.0072 16.6 0.0 0.032 14.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|219853291|ref|YP_002467723.1| - 0.0076 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|219853291|ref|YP_002467723.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.29 gi|219853291|ref|YP_002467723.1| - 0.012 16.1 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|219853291|ref|YP_002467723.1| - 0.019 15.1 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|219853291|ref|YP_002467723.1| - 0.083 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain APS_kinase PF01583.20 gi|219853291|ref|YP_002467723.1| - 0.12 12.3 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 gi|219853291|ref|YP_002467723.1| - 0.12 12.9 0.0 0.24 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|219853291|ref|YP_002467723.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase ABC_tran PF00005.27 gi|219853292|ref|YP_002467724.1| - 2.1e-11 44.5 0.0 3e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|219853292|ref|YP_002467724.1| - 1.8e-06 28.0 0.1 0.041 13.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|219853292|ref|YP_002467724.1| - 2.6e-05 23.8 0.0 4.5e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|219853292|ref|YP_002467724.1| - 0.00076 19.8 0.0 0.003 17.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|219853292|ref|YP_002467724.1| - 0.004 16.8 0.1 0.012 15.2 0.0 1.9 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|219853292|ref|YP_002467724.1| - 0.0061 16.3 0.2 0.044 13.5 0.2 2.3 1 1 1 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|219853292|ref|YP_002467724.1| - 0.013 15.9 0.1 0.022 15.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_35 PF14516.6 gi|219853292|ref|YP_002467724.1| - 0.018 13.9 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain RsgA_GTPase PF03193.16 gi|219853292|ref|YP_002467724.1| - 0.021 14.8 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|219853292|ref|YP_002467724.1| - 0.025 14.1 0.1 0.079 12.5 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region NACHT PF05729.12 gi|219853292|ref|YP_002467724.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.5 1 1 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|219853292|ref|YP_002467724.1| - 0.036 14.6 0.0 0.059 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|219853292|ref|YP_002467724.1| - 0.079 12.7 0.1 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase MMR_HSR1 PF01926.23 gi|219853292|ref|YP_002467724.1| - 0.081 13.0 0.1 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF2379 PF09543.10 gi|219853292|ref|YP_002467724.1| - 0.082 13.1 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) AAA_14 PF13173.6 gi|219853292|ref|YP_002467724.1| - 0.089 12.8 0.0 16 5.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|219853292|ref|YP_002467724.1| - 0.14 12.0 0.1 0.38 10.6 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea HTH_3 PF01381.22 gi|219853293|ref|YP_002467725.1| - 4.2e-08 33.1 0.1 9.9e-08 31.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_26 PF13443.6 gi|219853293|ref|YP_002467725.1| - 5e-06 26.9 0.0 7.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|219853293|ref|YP_002467725.1| - 1.9e-05 24.9 0.1 3.2e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|219853293|ref|YP_002467725.1| - 0.00084 19.1 0.1 0.0035 17.1 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain PrpR_N PF06506.11 gi|219853293|ref|YP_002467725.1| - 0.0065 16.1 0.3 0.015 14.9 0.1 1.6 2 0 0 2 2 2 1 Propionate catabolism activator MarR_2 PF12802.7 gi|219853293|ref|YP_002467725.1| - 0.014 15.3 0.1 0.2 11.6 0.1 2.3 2 0 0 2 2 2 0 MarR family TetR_N PF00440.23 gi|219853293|ref|YP_002467725.1| - 0.067 13.0 0.0 0.17 11.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.6 gi|219853293|ref|YP_002467725.1| - 0.073 12.6 0.0 0.52 9.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|219853293|ref|YP_002467725.1| - 0.078 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_19 PF12844.7 gi|219853293|ref|YP_002467725.1| - 0.088 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|219853293|ref|YP_002467725.1| - 0.13 12.1 0.0 0.69 9.8 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.20 gi|219853293|ref|YP_002467725.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MtN3_slv PF03083.16 gi|219853294|ref|YP_002467726.1| - 0.0014 18.7 0.5 0.0014 18.6 0.5 1.0 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.14 gi|219853295|ref|YP_002467727.1| - 0.0082 15.9 0.5 0.009 15.8 0.5 1.1 1 0 0 1 1 1 1 PQ loop repeat AP_endonuc_2 PF01261.24 gi|219853296|ref|YP_002467728.1| - 1.4e-06 27.9 0.1 2.2e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1614 PF07758.11 gi|219853297|ref|YP_002467729.1| - 8.9e-53 178.8 13.6 1.4e-52 178.1 13.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) PNTB PF02233.16 gi|219853297|ref|YP_002467729.1| - 0.017 14.1 2.2 0.017 14.1 2.2 1.7 2 0 0 2 2 2 0 NAD(P) transhydrogenase beta subunit Fibrillarin PF01269.17 gi|219853298|ref|YP_002467730.1| - 3.7e-59 199.6 0.0 4.6e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|219853298|ref|YP_002467730.1| - 0.0053 15.9 0.0 0.0061 15.7 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase DUF3123 PF11321.8 gi|219853298|ref|YP_002467730.1| - 0.0098 16.6 2.0 0.012 16.3 0.1 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF3123) Lar_N PF09861.9 gi|219853298|ref|YP_002467730.1| - 0.2 10.8 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Nop PF01798.18 gi|219853299|ref|YP_002467731.1| - 4.6e-37 127.7 0.1 3.1e-34 118.4 0.0 2.1 2 0 0 2 2 2 2 snoRNA binding domain, fibrillarin TctA PF01970.16 gi|219853300|ref|YP_002467732.1| - 1.1e-52 179.2 40.1 1.3e-52 179.0 40.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family CD20 PF04103.15 gi|219853300|ref|YP_002467732.1| - 0.0031 17.6 3.1 0.0031 17.6 3.1 2.3 2 0 0 2 2 2 1 CD20-like family DUF2769 PF10967.8 gi|219853301|ref|YP_002467733.1| - 1.7e-15 57.4 14.3 2.3e-15 57.0 14.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) TerY_C PF15616.6 gi|219853301|ref|YP_002467733.1| - 0.062 13.4 10.1 0.49 10.5 10.1 1.9 1 1 0 1 1 1 0 TerY-C metal binding domain HEM4 PF02602.15 gi|219853302|ref|YP_002467734.1| - 2.2e-14 53.4 0.0 3.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TruB_C_2 PF16198.5 gi|219853303|ref|YP_002467735.1| - 1.6e-23 82.6 0.2 3.1e-23 81.7 0.2 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|219853303|ref|YP_002467735.1| - 1e-22 81.1 0.1 3e-19 69.9 0.1 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.20 gi|219853303|ref|YP_002467735.1| - 5.8e-12 45.4 1.7 1.1e-11 44.5 1.7 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|219853303|ref|YP_002467735.1| - 0.00011 22.1 0.1 0.00023 21.2 0.1 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain bPH_6 PF10756.9 gi|219853303|ref|YP_002467735.1| - 0.1 12.7 1.2 0.22 11.6 0.1 2.2 3 0 0 3 3 3 0 Bacterial PH domain Peptidase_C1 PF00112.23 gi|219853304|ref|YP_002467736.1| - 4.7e-11 43.2 1.7 2.8e-10 40.7 1.7 1.9 1 1 0 1 1 1 1 Papain family cysteine protease Dockerin_1 PF00404.18 gi|219853304|ref|YP_002467736.1| - 3.9e-05 23.7 0.1 7.4e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|219853304|ref|YP_002467736.1| - 0.00016 21.4 2.3 0.043 13.8 0.2 2.7 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|219853304|ref|YP_002467736.1| - 0.016 14.7 9.0 0.051 13.1 0.3 2.9 3 0 0 3 3 3 0 EF hand Peptidase_C39_2 PF13529.6 gi|219853304|ref|YP_002467736.1| - 0.16 12.5 1.3 0.66 10.5 0.1 2.6 2 1 1 3 3 3 0 Peptidase_C39 like family EF-hand_8 PF13833.6 gi|219853304|ref|YP_002467736.1| - 0.36 10.7 3.5 1.1 9.1 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.6 gi|219853304|ref|YP_002467736.1| - 3.1 7.5 5.1 9 6.0 0.9 2.7 2 0 0 2 2 2 0 EF hand Forkhead_N PF08430.12 gi|219853304|ref|YP_002467736.1| - 3.4 8.3 4.7 2.2 8.9 2.5 1.9 2 0 0 2 2 2 0 Forkhead N-terminal region DUF1211 PF06736.11 gi|219853305|ref|YP_002467737.1| - 1.1e-23 83.4 5.1 3.3e-23 81.9 5.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1211) Response_reg PF00072.24 gi|219853306|ref|YP_002467738.1| - 3.1e-22 78.9 0.0 6.1e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|219853306|ref|YP_002467738.1| - 2.4e-13 50.2 0.0 2.4e-10 40.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|219853306|ref|YP_002467738.1| - 2.5e-09 37.1 0.1 1.1e-05 25.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|219853306|ref|YP_002467738.1| - 2.4e-07 31.0 2.1 1.1e-05 25.6 0.2 3.2 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|219853306|ref|YP_002467738.1| - 1.8e-05 24.6 0.1 0.013 15.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|219853306|ref|YP_002467738.1| - 0.016 15.5 0.1 0.039 14.3 0.1 1.6 1 0 0 1 1 1 0 PAS fold Methyltransf_11 PF08241.12 gi|219853306|ref|YP_002467738.1| - 0.12 13.0 0.0 0.76 10.5 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain MFS_1 PF07690.16 gi|219853307|ref|YP_002467739.1| - 1.3e-56 192.0 39.8 5.4e-36 124.2 18.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|219853307|ref|YP_002467739.1| - 5.4e-19 68.4 21.3 1.2e-11 44.1 2.9 2.1 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|219853307|ref|YP_002467739.1| - 6.7e-12 45.0 12.2 7e-08 31.7 4.1 2.3 1 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|219853307|ref|YP_002467739.1| - 4.2e-11 41.9 22.0 1.1e-05 24.0 5.6 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 gi|219853307|ref|YP_002467739.1| - 2.5e-08 33.6 31.1 1.3e-07 31.2 31.1 2.1 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_2 PF13347.6 gi|219853307|ref|YP_002467739.1| - 8.6e-07 27.9 24.3 0.00029 19.5 12.9 2.9 1 1 3 4 4 4 2 MFS/sugar transport protein PUCC PF03209.15 gi|219853307|ref|YP_002467739.1| - 0.0009 18.3 5.6 0.0009 18.3 5.6 3.0 2 1 0 2 2 2 1 PUCC protein TRI12 PF06609.13 gi|219853307|ref|YP_002467739.1| - 0.0035 15.8 8.0 0.019 13.4 2.2 2.4 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Folate_carrier PF01770.18 gi|219853307|ref|YP_002467739.1| - 0.28 9.9 2.1 0.47 9.1 0.4 1.7 1 1 1 2 2 2 0 Reduced folate carrier BT1 PF03092.16 gi|219853307|ref|YP_002467739.1| - 0.64 8.2 10.0 0.92 7.7 1.2 2.5 3 0 0 3 3 3 0 BT1 family POR PF01558.18 gi|219853308|ref|YP_002467740.1| - 2.8e-36 125.3 0.0 3.2e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|219853309|ref|YP_002467741.1| - 2.8e-29 101.9 0.4 4.9e-29 101.1 0.4 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|219853309|ref|YP_002467741.1| - 9.3e-10 38.6 0.0 3.7e-09 36.7 0.0 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|219853309|ref|YP_002467741.1| - 3e-08 33.2 11.3 3e-05 23.6 4.8 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|219853309|ref|YP_002467741.1| - 2.1e-05 24.6 18.3 0.0012 19.2 2.5 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|219853309|ref|YP_002467741.1| - 2.5e-05 24.2 18.9 0.00015 21.7 3.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|219853309|ref|YP_002467741.1| - 2.8e-05 24.1 11.3 0.00021 21.3 11.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|219853309|ref|YP_002467741.1| - 8.6e-05 22.6 11.6 0.0016 18.6 10.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|219853309|ref|YP_002467741.1| - 0.0001 22.1 21.3 0.00061 19.7 1.9 3.3 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|219853309|ref|YP_002467741.1| - 0.0003 20.9 11.3 0.00043 20.4 9.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|219853309|ref|YP_002467741.1| - 0.00033 21.2 11.9 0.017 15.7 12.1 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|219853309|ref|YP_002467741.1| - 0.00046 19.8 0.9 0.23 11.1 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|219853309|ref|YP_002467741.1| - 0.067 12.4 0.2 0.25 10.5 0.5 1.7 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_17 PF13534.6 gi|219853309|ref|YP_002467741.1| - 0.6 10.7 11.9 1.2 9.8 1.6 2.8 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|219853309|ref|YP_002467741.1| - 1.4 9.9 13.5 0.34 11.9 2.6 2.6 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|219853309|ref|YP_002467741.1| - 8.3 7.2 12.8 9.8 7.0 2.2 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|219853309|ref|YP_002467741.1| - 8.3 6.9 13.0 2.9 8.4 2.2 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|219853312|ref|YP_002467744.1| - 4.8e-20 72.6 0.0 1.1e-19 71.4 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|219853312|ref|YP_002467744.1| - 5.8e-16 58.3 0.1 1.1e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 DUF5558 PF17713.1 gi|219853312|ref|YP_002467744.1| - 0.078 13.4 1.4 0.14 12.5 1.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5558) PAS_9 PF13426.7 gi|219853313|ref|YP_002467745.1| - 4e-19 68.8 0.1 2.5e-05 24.5 0.0 4.7 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|219853313|ref|YP_002467745.1| - 5.2e-19 68.5 0.0 5.9e-07 29.7 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|219853313|ref|YP_002467745.1| - 1.7e-18 66.2 0.4 5e-07 29.6 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|219853313|ref|YP_002467745.1| - 2.7e-14 53.1 0.1 2.3e-05 24.4 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|219853313|ref|YP_002467745.1| - 1.1e-08 35.2 0.1 2.9e-08 33.9 0.1 1.8 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|219853313|ref|YP_002467745.1| - 4.7e-08 33.2 1.9 0.00099 19.3 0.5 4.2 3 1 0 3 3 3 2 PAS fold HTH_23 PF13384.6 gi|219853313|ref|YP_002467745.1| - 0.1 12.5 0.1 0.39 10.6 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain ABM PF03992.16 gi|219853314|ref|YP_002467746.1| - 1e-17 64.0 0.0 1.1e-17 63.9 0.0 1.0 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase F420_oxidored PF03807.17 gi|219853315|ref|YP_002467747.1| - 3.4e-13 50.0 0.5 5.1e-13 49.4 0.5 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|219853315|ref|YP_002467747.1| - 0.0016 18.3 0.6 0.0023 17.8 0.6 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|219853315|ref|YP_002467747.1| - 0.0018 17.9 0.3 0.0028 17.2 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain adh_short PF00106.25 gi|219853315|ref|YP_002467747.1| - 0.0031 17.0 0.6 0.0052 16.3 0.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase ApbA PF02558.16 gi|219853315|ref|YP_002467747.1| - 0.0071 16.0 0.3 0.015 15.0 0.2 1.6 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|219853315|ref|YP_002467747.1| - 0.01 16.0 0.2 0.02 15.1 0.1 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|219853315|ref|YP_002467747.1| - 0.15 11.4 0.3 0.3 10.4 0.3 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrpBP PF02081.15 gi|219853316|ref|YP_002467748.1| - 0.093 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein ADH_N PF08240.12 gi|219853317|ref|YP_002467749.1| - 3.1e-14 52.8 0.1 8.7e-14 51.3 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|219853317|ref|YP_002467749.1| - 5.8e-14 52.2 0.5 1.1e-13 51.3 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|219853317|ref|YP_002467749.1| - 0.069 14.2 0.0 0.13 13.3 0.0 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Gpr1_Fun34_YaaH PF01184.19 gi|219853319|ref|YP_002467751.1| - 3.1e-30 105.3 21.5 3.8e-30 105.1 21.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family RHH_3 PF12651.7 gi|219853321|ref|YP_002467753.1| - 0.068 13.1 0.1 0.76 9.8 0.0 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF108 PF01958.18 gi|219853323|ref|YP_002467755.1| - 3.8e-31 107.3 0.0 6.4e-31 106.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|219853323|ref|YP_002467755.1| - 9.7e-16 58.5 0.0 2.1e-15 57.4 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|219853323|ref|YP_002467755.1| - 0.0012 19.7 0.0 0.0021 18.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|219853323|ref|YP_002467755.1| - 0.0055 16.8 0.0 0.014 15.6 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus QRPTase_C PF01729.19 gi|219853324|ref|YP_002467756.1| - 3.4e-47 160.4 0.5 4.3e-47 160.0 0.5 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|219853324|ref|YP_002467756.1| - 1.7e-23 82.5 1.0 5.4e-23 80.9 0.1 2.2 3 0 0 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain PRAI PF00697.22 gi|219853324|ref|YP_002467756.1| - 0.0092 15.8 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Ribul_P_3_epim PF00834.19 gi|219853324|ref|YP_002467756.1| - 0.037 13.4 0.1 0.079 12.3 0.1 1.6 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family zf-ribbon_3 PF13248.6 gi|219853325|ref|YP_002467757.1| - 5.1e-06 25.7 0.4 0.1 12.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|219853325|ref|YP_002467757.1| - 0.00023 20.6 0.3 0.59 9.7 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|219853325|ref|YP_002467757.1| - 0.00031 20.4 2.1 0.1 12.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|219853325|ref|YP_002467757.1| - 0.0018 18.2 0.1 1.6 8.7 0.1 2.1 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 DZR PF12773.7 gi|219853325|ref|YP_002467757.1| - 0.0018 18.2 0.0 0.0033 17.4 0.0 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|219853325|ref|YP_002467757.1| - 0.0019 17.8 0.6 0.8 9.4 0.1 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|219853325|ref|YP_002467757.1| - 0.0023 18.2 0.1 1.9 8.8 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|219853325|ref|YP_002467757.1| - 0.0041 17.2 0.1 3.2 7.9 0.0 2.1 2 0 0 2 2 2 2 Zinc ribbon domain UPF0547 PF10571.9 gi|219853325|ref|YP_002467757.1| - 0.0051 16.9 3.1 1.8 8.7 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|219853325|ref|YP_002467757.1| - 0.0056 16.6 0.8 0.45 10.5 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.10 gi|219853325|ref|YP_002467757.1| - 0.0059 16.3 0.9 0.62 9.8 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|219853325|ref|YP_002467757.1| - 0.0095 15.8 0.0 1.9 8.5 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF4428 PF14471.6 gi|219853325|ref|YP_002467757.1| - 0.011 15.7 0.2 0.25 11.3 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) Nudix_N_2 PF14803.6 gi|219853325|ref|YP_002467757.1| - 0.013 15.4 2.6 3.3 7.7 0.7 2.4 2 1 0 2 2 2 0 Nudix N-terminal Zn_ribbon_SprT PF17283.2 gi|219853325|ref|YP_002467757.1| - 0.015 15.2 0.1 0.043 13.7 0.1 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|219853325|ref|YP_002467757.1| - 0.018 14.8 0.4 6.3 6.7 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.13 gi|219853325|ref|YP_002467757.1| - 0.019 14.6 0.7 4.5 7.1 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.14 gi|219853325|ref|YP_002467757.1| - 0.023 14.7 0.3 7.1 6.7 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_Tnp_IS1595 PF12760.7 gi|219853325|ref|YP_002467757.1| - 0.025 14.6 3.7 0.29 11.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.6 gi|219853325|ref|YP_002467757.1| - 0.026 14.1 0.4 5.5 6.7 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.6 gi|219853325|ref|YP_002467757.1| - 0.029 14.1 0.2 5.8 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|219853325|ref|YP_002467757.1| - 0.05 13.2 0.6 0.42 10.2 0.0 2.0 2 0 0 2 2 2 0 Zinc finger domain DUF1610 PF07754.11 gi|219853325|ref|YP_002467757.1| - 0.053 13.5 2.4 1.3 9.1 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_ribbon_recom PF13408.6 gi|219853325|ref|YP_002467757.1| - 0.072 13.6 0.4 3.3 8.3 0.0 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Ogr_Delta PF04606.12 gi|219853325|ref|YP_002467757.1| - 0.077 13.0 0.7 3 7.9 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Lar_restr_allev PF14354.6 gi|219853325|ref|YP_002467757.1| - 0.087 13.2 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.6 gi|219853325|ref|YP_002467757.1| - 0.087 13.7 0.5 2.2 9.4 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|219853325|ref|YP_002467757.1| - 0.088 12.8 1.0 6.3 6.9 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zf-H2C2_2 PF13465.6 gi|219853325|ref|YP_002467757.1| - 0.096 13.2 1.2 13 6.4 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|219853325|ref|YP_002467757.1| - 0.11 12.2 0.4 2 8.1 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_9 PF16293.5 gi|219853325|ref|YP_002467757.1| - 0.13 12.1 0.3 9.2 6.2 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) zf-RRN7 PF11781.8 gi|219853325|ref|YP_002467757.1| - 0.16 11.7 1.9 4.5 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_ligase_ZBD PF03119.16 gi|219853325|ref|YP_002467757.1| - 0.17 11.9 5.4 5.8 7.0 0.3 2.8 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-C2H2_12 PF18112.1 gi|219853325|ref|YP_002467757.1| - 0.18 12.3 0.6 20 5.7 0.3 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-ACC PF17848.1 gi|219853325|ref|YP_002467757.1| - 0.8 9.8 3.9 9.2 6.4 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Nre_N PF04894.12 gi|219853326|ref|YP_002467758.1| - 7.1e-86 288.4 0.0 1e-85 287.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|219853326|ref|YP_002467758.1| - 1e-33 115.5 0.1 1.8e-33 114.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DNA_ligase_A_M PF01068.21 gi|219853327|ref|YP_002467759.1| - 8.5e-48 162.7 0.0 1.3e-47 162.1 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|219853327|ref|YP_002467759.1| - 4.8e-33 114.9 0.0 2.7e-31 109.2 0.0 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|219853327|ref|YP_002467759.1| - 2.3e-19 69.8 0.0 5.1e-19 68.7 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|219853327|ref|YP_002467759.1| - 8.1e-05 23.0 0.0 0.00014 22.3 0.0 1.4 1 0 0 1 1 1 1 RNA ligase Lactamase_B_2 PF12706.7 gi|219853328|ref|YP_002467760.1| - 4e-25 88.5 0.1 5e-25 88.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|219853328|ref|YP_002467760.1| - 3.9e-17 62.9 0.0 4.8e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|219853328|ref|YP_002467760.1| - 5.6e-06 26.3 0.0 9.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain P-II PF00543.22 gi|219853329|ref|YP_002467761.1| - 1.2e-37 128.6 0.8 1.3e-37 128.4 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|219853329|ref|YP_002467761.1| - 0.092 13.0 0.2 11 6.2 0.1 2.5 2 1 0 2 2 2 0 Cyclic-di-AMP receptor Ammonium_transp PF00909.21 gi|219853330|ref|YP_002467762.1| - 4.3e-126 420.8 40.3 5e-126 420.6 40.3 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family CBP_BcsG PF11658.8 gi|219853330|ref|YP_002467762.1| - 0.25 9.7 0.3 0.38 9.1 0.3 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG TerC PF03741.16 gi|219853331|ref|YP_002467763.1| - 0.35 10.5 8.1 0.19 11.4 3.4 2.0 2 0 0 2 2 2 0 Integral membrane protein TerC family 7TMR-DISM_7TM PF07695.11 gi|219853331|ref|YP_002467763.1| - 1.1 9.1 10.7 0.72 9.7 3.7 2.1 1 1 0 2 2 2 0 7TM diverse intracellular signalling Ammonium_transp PF00909.21 gi|219853332|ref|YP_002467764.1| - 3.9e-126 421.0 39.4 4.4e-126 420.8 39.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Sec_GG PF07549.14 gi|219853332|ref|YP_002467764.1| - 0.049 13.1 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif Nuc_deoxyrib_tr PF05014.15 gi|219853333|ref|YP_002467765.1| - 3.6e-23 82.0 0.0 1.4e-22 80.1 0.0 1.8 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|219853333|ref|YP_002467765.1| - 9.4e-13 48.4 0.0 1.4e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like DUF523 PF04463.12 gi|219853333|ref|YP_002467765.1| - 0.00097 19.2 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Glyco_trans_1_4 PF13692.6 gi|219853333|ref|YP_002467765.1| - 0.015 15.7 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 LDcluster4 PF18306.1 gi|219853333|ref|YP_002467765.1| - 0.051 13.2 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster4 family Ribo_biogen_C PF04034.13 gi|219853334|ref|YP_002467766.1| - 1.1e-42 144.7 0.0 1.4e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|219853334|ref|YP_002467766.1| - 2e-08 33.9 0.2 3.5e-08 33.1 0.2 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Gp_dh_C PF02800.20 gi|219853336|ref|YP_002467768.1| - 5.1e-24 84.6 0.1 8e-24 84.0 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|219853336|ref|YP_002467768.1| - 9.4e-12 45.1 0.9 3e-11 43.5 0.1 2.3 3 1 0 3 3 3 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|219853336|ref|YP_002467768.1| - 3.7e-07 30.4 1.0 4.6e-06 26.9 0.0 3.0 3 1 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|219853336|ref|YP_002467768.1| - 5.5e-05 22.6 0.1 0.02 14.2 0.1 2.5 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|219853336|ref|YP_002467768.1| - 0.00027 21.4 0.0 0.0016 18.8 0.0 2.3 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|219853336|ref|YP_002467768.1| - 0.00059 20.1 0.4 0.0017 18.6 0.0 2.0 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|219853336|ref|YP_002467768.1| - 0.00095 19.8 0.1 0.11 13.2 0.0 2.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|219853336|ref|YP_002467768.1| - 0.0011 19.8 0.1 0.0036 18.1 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|219853336|ref|YP_002467768.1| - 0.0069 16.6 1.2 0.031 14.5 0.0 2.6 2 1 1 3 3 3 1 TrkA-N domain F420_oxidored PF03807.17 gi|219853336|ref|YP_002467768.1| - 0.04 14.5 0.1 0.15 12.7 0.1 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PglD_N PF17836.1 gi|219853336|ref|YP_002467768.1| - 0.069 13.8 0.1 0.27 11.9 0.0 2.1 2 0 0 2 2 2 0 PglD N-terminal domain tRNA-synt_1b PF00579.25 gi|219853337|ref|YP_002467769.1| - 6.3e-49 166.9 0.0 7.5e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|219853337|ref|YP_002467769.1| - 0.042 12.8 0.0 1.2 7.9 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) RIO1 PF01163.22 gi|219853338|ref|YP_002467770.1| - 6.6e-56 188.9 0.0 9.3e-56 188.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|219853338|ref|YP_002467770.1| - 0.044 13.1 0.0 0.71 9.2 0.0 2.1 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|219853338|ref|YP_002467770.1| - 0.17 10.6 0.0 0.24 10.1 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase KH_1 PF00013.29 gi|219853339|ref|YP_002467771.1| - 9e-13 47.9 5.1 2.8e-06 27.0 1.3 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|219853339|ref|YP_002467771.1| - 0.0016 18.2 1.7 0.28 11.0 0.3 2.5 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|219853339|ref|YP_002467771.1| - 0.018 14.9 4.2 3.2 7.7 0.5 2.8 2 1 1 3 3 3 0 KH domain DEAD PF00270.29 gi|219853340|ref|YP_002467772.1| - 3.5e-23 82.3 0.0 9.1e-23 80.9 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|219853340|ref|YP_002467772.1| - 5.9e-09 36.2 0.0 7.3e-08 32.7 0.0 2.7 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|219853340|ref|YP_002467772.1| - 1.9e-06 28.0 0.0 3.9e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|219853340|ref|YP_002467772.1| - 0.00047 20.7 0.0 0.0014 19.2 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain CGI-121 PF08617.10 gi|219853341|ref|YP_002467773.1| - 4.9e-07 30.0 0.0 5.9e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MoCF_biosynth PF00994.24 gi|219853342|ref|YP_002467774.1| - 1e-34 119.2 0.1 1.3e-34 119.0 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF5381 PF17353.2 gi|219853342|ref|YP_002467774.1| - 0.07 12.9 0.0 0.14 11.9 0.0 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5381) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosphaerula_palustris_E1_9c_uid59193/NC_011832.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosphaerula_palustris_E1_9c_uid59193/NC_011832.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosphaerula_palustris_E1_9c_uid59193/NC_011832.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosphaerula_palustris_E1_9c_uid59193/NC_011832.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:13:28 2019 # [ok]