# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|20088900|ref|NP_614975.1| - 1.2e-27 95.4 0.5 3e-27 94.1 0.3 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|20088900|ref|NP_614975.1| - 4.6e-13 49.4 0.0 1.1e-12 48.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20088900|ref|NP_614975.1| - 8.1e-10 38.9 1.3 2e-08 34.4 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|20088900|ref|NP_614975.1| - 4.7e-09 36.5 0.0 1.2e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|20088900|ref|NP_614975.1| - 1.8e-08 34.3 0.1 3.8e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase KAP_NTPase PF07693.9 gi|20088900|ref|NP_614975.1| - 9.4e-06 24.8 1.5 0.012 14.6 0.0 2.2 1 1 1 2 2 2 2 KAP family P-loop domain DEAD PF00270.24 gi|20088900|ref|NP_614975.1| - 0.00011 21.7 0.7 0.83 9.1 0.0 3.2 3 0 0 3 3 3 2 DEAD/DEAH box helicase NACHT PF05729.7 gi|20088900|ref|NP_614975.1| - 0.00019 21.1 0.0 0.00047 19.8 0.0 1.7 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.21 gi|20088900|ref|NP_614975.1| - 0.00044 19.7 0.0 0.00099 18.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF2075 PF09848.4 gi|20088900|ref|NP_614975.1| - 0.00044 19.3 0.0 0.00065 18.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|20088900|ref|NP_614975.1| - 0.00057 18.8 0.2 0.0042 16.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|20088900|ref|NP_614975.1| - 0.0011 18.1 0.3 0.015 14.3 0.0 2.4 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus Bac_DnaA PF00308.13 gi|20088900|ref|NP_614975.1| - 0.0012 18.4 0.5 0.01 15.5 0.4 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20088900|ref|NP_614975.1| - 0.0017 19.1 0.4 0.0044 17.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20088900|ref|NP_614975.1| - 0.0023 18.2 0.3 0.0095 16.2 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20088900|ref|NP_614975.1| - 0.0084 15.7 0.1 0.017 14.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|20088900|ref|NP_614975.1| - 0.01 14.7 0.0 0.015 14.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|20088900|ref|NP_614975.1| - 0.024 13.5 0.0 0.048 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_2 PF07724.9 gi|20088900|ref|NP_614975.1| - 0.034 14.0 0.4 0.18 11.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|20088900|ref|NP_614975.1| - 0.036 13.4 0.1 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20088900|ref|NP_614975.1| - 0.06 13.5 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|20088900|ref|NP_614975.1| - 0.13 11.9 0.5 0.68 9.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) SSF PF00474.12 gi|20088902|ref|NP_614977.1| - 7.3e-104 347.6 27.5 9.7e-104 347.2 19.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family IstB_IS21 PF01695.12 gi|20088903|ref|NP_614978.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20088903|ref|NP_614978.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20088903|ref|NP_614978.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20088903|ref|NP_614978.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20088903|ref|NP_614978.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20088903|ref|NP_614978.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20088903|ref|NP_614978.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20088903|ref|NP_614978.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20088903|ref|NP_614978.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20088903|ref|NP_614978.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20088903|ref|NP_614978.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20088903|ref|NP_614978.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20088903|ref|NP_614978.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20088903|ref|NP_614978.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20088903|ref|NP_614978.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20088903|ref|NP_614978.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20088903|ref|NP_614978.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20088903|ref|NP_614978.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20088903|ref|NP_614978.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20088903|ref|NP_614978.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20088903|ref|NP_614978.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20088903|ref|NP_614978.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20088903|ref|NP_614978.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20088903|ref|NP_614978.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20088903|ref|NP_614978.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20088903|ref|NP_614978.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20088903|ref|NP_614978.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20088903|ref|NP_614978.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20088904|ref|NP_614979.1| - 8.7e-20 71.0 0.0 1.6e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20088904|ref|NP_614979.1| - 8.1e-07 28.5 0.1 2e-06 27.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20088904|ref|NP_614979.1| - 1.4e-05 24.8 0.2 3.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.1 gi|20088904|ref|NP_614979.1| - 2.2e-05 23.8 0.0 6.7e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|20088904|ref|NP_614979.1| - 2.6e-05 23.7 0.5 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20088904|ref|NP_614979.1| - 0.0087 16.1 0.0 0.23 11.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20088904|ref|NP_614979.1| - 0.01 15.4 0.2 0.04 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Sigma70_r4 PF04545.11 gi|20088904|ref|NP_614979.1| - 0.012 14.8 0.1 0.03 13.6 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20088904|ref|NP_614979.1| - 0.018 14.5 0.0 0.054 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.17 gi|20088904|ref|NP_614979.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20088904|ref|NP_614979.1| - 0.021 14.9 0.0 0.078 13.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20088904|ref|NP_614979.1| - 0.025 14.5 0.2 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20088904|ref|NP_614979.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20088904|ref|NP_614979.1| - 0.071 12.5 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20088904|ref|NP_614979.1| - 0.087 12.3 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Pyridoxal_deC PF00282.14 gi|20088905|ref|NP_614980.1| - 9.7e-33 113.1 0.0 1.4e-32 112.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|20088905|ref|NP_614980.1| - 1.2e-08 34.1 0.0 4.4e-07 28.9 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|20088905|ref|NP_614980.1| - 5.2e-07 28.9 0.0 5.4e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|20088905|ref|NP_614980.1| - 0.013 14.6 0.0 0.019 14.0 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase CBS PF00571.23 gi|20088906|ref|NP_614981.1| - 1.9e-26 91.5 3.5 1.3e-12 47.2 0.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|20088906|ref|NP_614981.1| - 6.7e-20 70.8 11.3 1.1e-14 53.8 3.1 2.5 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|20088906|ref|NP_614981.1| - 0.00012 21.4 1.6 0.00012 21.4 1.1 2.3 2 0 0 2 2 2 1 Peptidase M50B-like DUF3595 PF12166.3 gi|20088906|ref|NP_614981.1| - 4.1 6.1 6.0 0.73 8.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3595) TraB PF01963.12 gi|20088907|ref|NP_614982.1| - 8.4e-52 176.1 0.0 1.1e-51 175.7 0.0 1.1 1 0 0 1 1 1 1 TraB family DUF4405 PF14358.1 gi|20088908|ref|NP_614983.1| - 2.8e-16 59.4 10.8 3.3e-16 59.1 7.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.15 gi|20088908|ref|NP_614983.1| - 2.6e-05 23.7 3.4 2.7e-05 23.6 2.3 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|20088908|ref|NP_614983.1| - 0.0033 16.8 4.7 0.0039 16.5 3.3 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ferric_reduct PF01794.14 gi|20088908|ref|NP_614983.1| - 0.016 15.2 6.5 0.019 15.0 4.2 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF4233 PF14017.1 gi|20088908|ref|NP_614983.1| - 0.076 12.9 5.6 0.093 12.6 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) DUF4051 PF13260.1 gi|20088908|ref|NP_614983.1| - 0.15 11.4 1.9 0.29 10.5 1.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) PepSY_TM_2 PF13703.1 gi|20088908|ref|NP_614983.1| - 1.1 9.5 9.3 0.14 12.3 2.9 1.9 1 1 1 2 2 2 0 PepSY-associated TM helix FTR_C PF02741.10 gi|20088909|ref|NP_614984.1| - 6.8e-69 230.4 3.4 1.2e-68 229.5 2.3 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|20088909|ref|NP_614984.1| - 5.1e-67 224.0 0.2 5.1e-67 224.0 0.2 1.6 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase BMC PF00936.14 gi|20088909|ref|NP_614984.1| - 0.061 13.0 1.8 0.43 10.2 0.2 2.5 2 0 0 2 2 2 0 BMC domain PT-VENN PF04829.8 gi|20088909|ref|NP_614984.1| - 1.2 8.7 4.3 0.81 9.2 0.9 2.4 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif CheD PF03975.8 gi|20088910|ref|NP_614985.1| - 1.2e-33 115.2 0.2 1.5e-33 114.9 0.2 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|20088911|ref|NP_614986.1| - 1.2e-10 40.9 0.5 0.00038 20.1 0.0 3.0 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|20088911|ref|NP_614986.1| - 2.9e-06 27.0 0.1 2.1e-05 24.2 0.0 2.0 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX CheR PF01739.13 gi|20088912|ref|NP_614987.1| - 2.1e-57 193.6 0.1 3.8e-57 192.7 0.1 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|20088912|ref|NP_614987.1| - 1.3e-15 56.5 0.2 2.9e-15 55.3 0.1 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|20088912|ref|NP_614987.1| - 8.4e-06 26.1 0.1 3.5e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20088912|ref|NP_614987.1| - 4.4e-05 23.1 0.1 0.24 10.9 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20088912|ref|NP_614987.1| - 0.00012 22.6 0.0 0.00022 21.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20088912|ref|NP_614987.1| - 0.0029 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20088912|ref|NP_614987.1| - 0.28 10.3 2.7 1.9 7.6 0.1 2.5 2 1 0 2 2 2 0 Tellurite resistance protein TehB CheW PF01584.14 gi|20088913|ref|NP_614988.1| - 8.6e-27 93.2 2.1 1.8e-26 92.2 1.4 1.6 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.21 gi|20088913|ref|NP_614988.1| - 4.5e-22 77.8 0.1 1e-21 76.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|20088913|ref|NP_614988.1| - 4.4e-20 71.4 0.7 1.2e-19 70.0 0.1 2.1 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.9 gi|20088913|ref|NP_614988.1| - 2.1e-14 53.5 3.9 2.1e-14 53.5 2.7 2.7 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|20088913|ref|NP_614988.1| - 0.003 17.2 0.0 0.003 17.2 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Zip PF02535.17 gi|20088913|ref|NP_614988.1| - 0.011 14.7 2.3 0.026 13.5 0.7 2.0 2 0 0 2 2 2 0 ZIP Zinc transporter DUF1974 PF09317.6 gi|20088913|ref|NP_614988.1| - 0.11 11.8 0.1 0.11 11.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1974) Daxx PF03344.10 gi|20088913|ref|NP_614988.1| - 0.11 10.9 26.0 0.16 10.3 18.0 1.2 1 0 0 1 1 1 0 Daxx Family DUF2413 PF10310.4 gi|20088913|ref|NP_614988.1| - 1 8.0 22.8 1.7 7.3 15.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) RR_TM4-6 PF06459.7 gi|20088913|ref|NP_614988.1| - 5.3 6.8 22.7 9.4 6.0 15.7 1.4 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 CheB_methylest PF01339.12 gi|20088914|ref|NP_614989.1| - 4.5e-66 221.7 0.2 1.1e-65 220.4 0.1 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|20088914|ref|NP_614989.1| - 2.2e-21 75.9 0.5 4.9e-21 74.8 0.1 1.8 2 0 0 2 2 2 1 Response regulator receiver domain DUF1678 PF07913.6 gi|20088914|ref|NP_614989.1| - 0.003 17.1 0.0 0.0071 15.9 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1678) QRPTase_C PF01729.14 gi|20088914|ref|NP_614989.1| - 0.015 14.7 0.1 0.026 14.0 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Peripla_BP_2 PF01497.13 gi|20088914|ref|NP_614989.1| - 0.025 13.6 0.1 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein B12-binding PF02310.14 gi|20088914|ref|NP_614989.1| - 0.043 13.6 0.2 0.15 11.9 0.0 2.0 2 1 1 3 3 3 0 B12 binding domain Response_reg PF00072.19 gi|20088915|ref|NP_614990.1| - 2.9e-27 94.9 2.1 3.3e-27 94.7 1.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Jiraiya PF15038.1 gi|20088916|ref|NP_614991.1| - 7.2 5.9 16.1 11 5.4 0.8 4.2 1 1 3 4 4 4 0 Jiraiya Response_reg PF00072.19 gi|20088917|ref|NP_614992.1| - 2.5e-22 78.9 0.0 2.8e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Herpes_UL45 PF05473.7 gi|20088917|ref|NP_614992.1| - 0.055 12.8 0.0 0.072 12.4 0.0 1.1 1 0 0 1 1 1 0 UL45 protein MCPsignal PF00015.16 gi|20088918|ref|NP_614993.1| - 9.3e-55 185.4 29.7 9.3e-55 185.4 20.6 4.9 3 2 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|20088918|ref|NP_614993.1| - 2e-12 47.0 0.0 2e-12 47.0 0.0 5.1 5 2 1 6 6 6 1 HAMP domain T2SF PF00482.18 gi|20088918|ref|NP_614993.1| - 0.035 14.0 0.5 0.035 14.0 0.4 5.2 4 1 0 5 5 5 0 Type II secretion system (T2SS), protein F Reo_sigmaC PF04582.7 gi|20088918|ref|NP_614993.1| - 0.06 12.5 33.3 0.2 10.7 6.2 3.5 2 1 1 3 3 3 0 Reovirus sigma C capsid protein cwf21 PF08312.7 gi|20088918|ref|NP_614993.1| - 0.09 12.6 4.9 0.49 10.2 0.1 3.8 3 0 0 3 3 3 0 cwf21 domain Baculo_11_kDa PF06143.6 gi|20088918|ref|NP_614993.1| - 0.13 11.6 3.1 0.17 11.2 0.1 2.7 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF948 PF06103.6 gi|20088918|ref|NP_614993.1| - 1.4 8.8 30.6 0.21 11.4 1.6 6.4 4 2 3 7 7 7 0 Bacterial protein of unknown function (DUF948) TMPIT PF07851.8 gi|20088918|ref|NP_614993.1| - 4.5 6.2 16.2 3.3 6.6 0.4 4.1 1 1 3 4 4 4 0 TMPIT-like protein H-kinase_dim PF02895.9 gi|20088918|ref|NP_614993.1| - 5.8 7.3 25.7 7.3e+02 0.6 1.1 7.1 4 3 0 4 4 4 0 Signal transducing histidine kinase, homodimeric domain CheW PF01584.14 gi|20088919|ref|NP_614994.1| - 3.9e-35 120.3 1.5 4.6e-35 120.0 1.0 1.1 1 0 0 1 1 1 1 CheW-like domain GntP_permease PF02447.11 gi|20088920|ref|NP_614995.1| - 1.5e-64 218.1 19.9 9.4e-36 123.2 0.6 2.0 2 0 0 2 2 2 2 GntP family permease DUF2852 PF11014.3 gi|20088920|ref|NP_614995.1| - 0.089 12.7 0.2 0.74 9.7 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2852) DUF1240 PF06836.7 gi|20088920|ref|NP_614995.1| - 0.099 12.8 2.1 0.34 11.1 1.5 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1240) Fe_dep_repress PF01325.14 gi|20088921|ref|NP_614996.1| - 7.8e-13 48.1 0.0 1.2e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|20088921|ref|NP_614996.1| - 2.1e-12 46.5 0.0 3.4e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|20088921|ref|NP_614996.1| - 1e-06 28.3 0.0 6.8e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|20088921|ref|NP_614996.1| - 2.7e-05 23.7 0.1 6.3e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|20088921|ref|NP_614996.1| - 0.00089 18.7 0.0 0.086 12.3 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|20088921|ref|NP_614996.1| - 0.0009 18.9 0.1 0.0024 17.5 0.0 1.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20088921|ref|NP_614996.1| - 0.0019 17.9 0.0 0.014 15.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|20088921|ref|NP_614996.1| - 0.0056 16.9 0.0 0.0078 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|20088921|ref|NP_614996.1| - 0.017 15.2 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|20088921|ref|NP_614996.1| - 0.042 13.4 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|20088921|ref|NP_614996.1| - 0.082 12.7 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|20088921|ref|NP_614996.1| - 0.099 12.4 0.0 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Topoisom_bac PF01131.15 gi|20088921|ref|NP_614996.1| - 0.14 10.9 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase TroA PF01297.12 gi|20088922|ref|NP_614997.1| - 6.1e-75 251.7 1.0 7.1e-75 251.5 0.7 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Aminotran_MocR PF12897.2 gi|20088922|ref|NP_614997.1| - 0.011 14.3 0.0 0.02 13.4 0.0 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase FtsH_ext PF06480.10 gi|20088922|ref|NP_614997.1| - 0.016 15.3 0.0 0.16 12.1 0.0 2.2 2 0 0 2 2 2 0 FtsH Extracellular Nop14 PF04147.7 gi|20088922|ref|NP_614997.1| - 1.6 6.5 14.9 1.8 6.3 10.3 1.1 1 0 0 1 1 1 0 Nop14-like family DUF2457 PF10446.4 gi|20088922|ref|NP_614997.1| - 3.1 6.4 13.2 4.4 5.9 9.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) ABC_tran PF00005.22 gi|20088923|ref|NP_614998.1| - 4.4e-28 98.2 0.0 6e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20088923|ref|NP_614998.1| - 2.7e-19 70.2 0.4 2.8e-11 43.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20088923|ref|NP_614998.1| - 1e-06 28.1 0.1 4.6e-06 26.0 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20088923|ref|NP_614998.1| - 3e-05 23.2 0.0 0.0039 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|20088923|ref|NP_614998.1| - 0.00089 19.1 0.0 0.024 14.5 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|20088923|ref|NP_614998.1| - 0.0012 18.9 0.1 0.0047 17.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|20088923|ref|NP_614998.1| - 0.0042 17.4 2.2 0.0064 16.8 1.5 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|20088923|ref|NP_614998.1| - 0.0067 16.6 0.2 0.1 12.8 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|20088923|ref|NP_614998.1| - 0.012 15.4 0.2 0.18 11.6 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20088923|ref|NP_614998.1| - 0.029 13.8 0.4 0.84 9.0 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|20088923|ref|NP_614998.1| - 0.061 12.2 0.0 0.095 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Pox_A32 PF04665.7 gi|20088923|ref|NP_614998.1| - 0.089 12.0 0.5 0.22 10.7 0.0 1.7 2 0 0 2 2 2 0 Poxvirus A32 protein NACHT PF05729.7 gi|20088923|ref|NP_614998.1| - 0.15 11.7 0.8 0.61 9.7 0.4 1.9 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|20088923|ref|NP_614998.1| - 0.58 10.9 2.0 1.9 9.2 1.4 2.1 1 1 0 1 1 1 0 AAA domain ABC-3 PF00950.12 gi|20088924|ref|NP_614999.1| - 2.7e-81 272.6 28.4 3.3e-81 272.3 19.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|20088924|ref|NP_614999.1| - 2.2e-08 33.2 23.7 7.6e-08 31.5 16.4 1.9 1 1 0 1 1 1 1 FecCD transport family DUF3302 PF11742.3 gi|20088924|ref|NP_614999.1| - 1.6 8.5 7.0 0.43 10.4 1.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3302) MULE PF10551.4 gi|20088926|ref|NP_615001.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20088926|ref|NP_615001.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20088926|ref|NP_615001.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20088926|ref|NP_615001.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20088926|ref|NP_615001.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20088926|ref|NP_615001.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20088926|ref|NP_615001.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20088926|ref|NP_615001.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger DUF11 PF01345.13 gi|20088928|ref|NP_615003.1| - 1.2e-14 54.0 5.5 3.9e-07 30.0 0.9 3.0 2 0 0 2 2 2 2 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|20088928|ref|NP_615003.1| - 0.064 12.7 0.6 1.2 8.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) Methyltransf_18 PF12847.2 gi|20088929|ref|NP_615004.1| - 6e-17 62.2 0.0 1e-16 61.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20088929|ref|NP_615004.1| - 1.1e-16 60.8 0.0 5.4e-16 58.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20088929|ref|NP_615004.1| - 1.7e-14 54.0 0.0 2.9e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20088929|ref|NP_615004.1| - 1.7e-13 50.8 0.0 2.9e-12 46.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20088929|ref|NP_615004.1| - 7.8e-13 48.4 0.0 1.3e-12 47.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20088929|ref|NP_615004.1| - 3.9e-12 46.4 0.0 9e-12 45.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|20088929|ref|NP_615004.1| - 9.8e-08 31.5 0.0 1.8e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20088929|ref|NP_615004.1| - 1.5e-06 28.2 0.0 2.6e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.13 gi|20088929|ref|NP_615004.1| - 4.1e-06 26.2 0.0 0.00028 20.2 0.0 2.7 2 1 1 3 3 3 1 CheR methyltransferase, SAM binding domain Ubie_methyltran PF01209.13 gi|20088929|ref|NP_615004.1| - 1.4e-05 24.3 0.0 0.043 12.9 0.0 2.4 3 0 0 3 3 3 2 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|20088929|ref|NP_615004.1| - 4.4e-05 22.6 0.0 8.4e-05 21.7 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|20088929|ref|NP_615004.1| - 0.00013 22.7 0.0 0.00052 20.8 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|20088929|ref|NP_615004.1| - 0.00014 21.3 0.0 0.00024 20.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.13 gi|20088929|ref|NP_615004.1| - 0.00037 19.7 0.0 0.0045 16.2 0.0 2.2 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|20088929|ref|NP_615004.1| - 0.00052 19.7 0.0 0.00087 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20088929|ref|NP_615004.1| - 0.004 16.7 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|20088929|ref|NP_615004.1| - 0.01 14.8 0.0 0.13 11.3 0.0 2.0 2 0 0 2 2 2 0 O-methyltransferase Bin3 PF06859.7 gi|20088929|ref|NP_615004.1| - 0.12 12.3 0.1 0.92 9.5 0.1 2.2 1 1 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) TPP_enzyme_C PF02775.16 gi|20088930|ref|NP_615005.1| - 3.7e-26 91.5 0.1 5.3e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|20088931|ref|NP_615006.1| - 1.7e-69 233.8 0.2 2.4e-69 233.3 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|20088931|ref|NP_615006.1| - 6.2e-06 26.1 0.0 1.7e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|20088932|ref|NP_615007.1| - 1.1e-13 50.0 17.8 4.3e-08 32.4 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20088932|ref|NP_615007.1| - 3.4e-11 42.5 13.4 6.1e-06 25.8 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20088932|ref|NP_615007.1| - 4.3e-11 43.0 35.8 5.3e-07 29.9 9.3 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20088932|ref|NP_615007.1| - 5.3e-10 38.9 20.8 1e-07 31.6 7.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20088932|ref|NP_615007.1| - 5.9e-10 38.7 23.3 2.4e-07 30.4 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20088932|ref|NP_615007.1| - 1.6e-08 34.6 10.1 2.4e-08 34.0 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20088932|ref|NP_615007.1| - 2e-08 33.6 15.3 5.4e-05 22.8 2.2 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20088932|ref|NP_615007.1| - 8.9e-08 32.7 11.4 0.00058 20.5 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20088932|ref|NP_615007.1| - 8.7e-06 25.6 11.8 0.0021 18.2 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20088932|ref|NP_615007.1| - 1.8e-05 24.6 12.7 0.00043 20.2 9.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20088932|ref|NP_615007.1| - 0.00075 19.8 9.3 0.13 12.6 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20088932|ref|NP_615007.1| - 0.0023 18.2 13.5 0.086 13.1 1.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20088932|ref|NP_615007.1| - 0.0058 17.1 19.7 0.21 12.2 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|20088932|ref|NP_615007.1| - 0.036 13.9 4.5 0.045 13.6 3.1 1.1 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20088932|ref|NP_615007.1| - 0.063 13.8 13.1 0.86 10.2 2.7 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20088932|ref|NP_615007.1| - 0.15 12.5 15.9 0.14 12.5 2.5 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|20088933|ref|NP_615008.1| - 6.8e-41 140.0 0.5 7.9e-41 139.8 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Dus PF01207.12 gi|20088934|ref|NP_615009.1| - 5.4e-81 271.8 0.0 6.4e-81 271.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Oxidored_FMN PF00724.15 gi|20088934|ref|NP_615009.1| - 1e-05 24.6 0.0 2.8e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|20088934|ref|NP_615009.1| - 4.7e-05 22.7 0.0 0.00012 21.4 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|20088934|ref|NP_615009.1| - 0.02 13.9 0.7 0.06 12.4 0.2 1.8 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|20088934|ref|NP_615009.1| - 0.062 12.2 0.0 0.48 9.3 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|20088934|ref|NP_615009.1| - 0.1 11.7 0.1 0.21 10.7 0.0 1.7 1 1 0 1 1 1 0 Nitronate monooxygenase Peptidase_S24 PF00717.18 gi|20088935|ref|NP_615010.1| - 0.00029 20.4 0.1 0.00049 19.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|20088936|ref|NP_615011.1| - 1.1e-16 60.7 0.0 2.2e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|20088936|ref|NP_615011.1| - 2.7e-11 43.5 0.0 5.4e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20088936|ref|NP_615011.1| - 2e-10 40.3 0.2 3.7e-10 39.5 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|20088936|ref|NP_615011.1| - 8.3e-05 22.3 0.0 0.00021 21.1 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF2099 PF09872.4 gi|20088938|ref|NP_615013.1| - 3.3e-114 380.2 4.5 3.8e-114 380.0 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) UBA_4 PF14555.1 gi|20088938|ref|NP_615013.1| - 0.14 11.6 0.3 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 UBA-like domain Wyosine_form PF08608.7 gi|20088939|ref|NP_615014.1| - 1.3e-24 86.0 0.0 4.5e-24 84.3 0.0 1.9 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|20088939|ref|NP_615014.1| - 4.4e-22 79.0 0.2 2e-20 73.6 0.1 2.5 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20088939|ref|NP_615014.1| - 0.005 16.8 0.0 0.018 15.0 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|20088939|ref|NP_615014.1| - 0.01 16.0 0.0 0.091 12.9 0.0 2.3 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase eRF1_2 PF03464.10 gi|20088941|ref|NP_615016.1| - 1.5e-35 122.3 0.0 2.7e-35 121.5 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|20088941|ref|NP_615016.1| - 1.2e-31 109.2 0.0 6.2e-31 107.0 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|20088941|ref|NP_615016.1| - 1.3e-23 83.0 0.1 2.8e-23 81.9 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 1 zinc_ribbon_2 PF13240.1 gi|20088941|ref|NP_615016.1| - 0.019 14.4 1.8 0.42 10.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|20088941|ref|NP_615016.1| - 0.031 13.9 0.4 7.7 6.2 0.0 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit AMP_N PF05195.11 gi|20088941|ref|NP_615016.1| - 0.067 12.5 0.0 0.51 9.7 0.0 2.3 2 0 0 2 2 2 0 Aminopeptidase P, N-terminal domain zinc_ribbon_4 PF13717.1 gi|20088941|ref|NP_615016.1| - 0.11 12.2 0.3 4.2 7.1 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|20088941|ref|NP_615016.1| - 0.11 11.7 2.5 0.41 9.9 1.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|20088941|ref|NP_615016.1| - 0.12 12.0 0.1 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|20088941|ref|NP_615016.1| - 0.12 11.9 0.3 5.7 6.6 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|20088941|ref|NP_615016.1| - 0.22 11.3 1.2 3 7.7 0.9 2.0 1 1 1 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|20088941|ref|NP_615016.1| - 0.59 9.8 2.5 3.4 7.4 1.7 2.2 1 1 0 1 1 1 0 Putative transposase DNA-binding domain tRNA-synt_1d PF00750.14 gi|20088942|ref|NP_615017.1| - 1.5e-56 191.8 0.2 2e-56 191.3 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|20088942|ref|NP_615017.1| - 1.1e-32 112.5 0.0 3.4e-32 110.8 0.0 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|20088942|ref|NP_615017.1| - 3.2e-14 53.2 0.5 1.1e-13 51.5 0.1 2.1 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|20088942|ref|NP_615017.1| - 5.6e-08 31.8 0.0 0.0045 15.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|20088942|ref|NP_615017.1| - 4.3e-06 25.6 0.0 0.001 17.7 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|20088942|ref|NP_615017.1| - 3.6e-05 23.0 0.2 6.7e-05 22.1 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|20088942|ref|NP_615017.1| - 0.0035 15.4 0.0 0.0054 14.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) DUF2683 PF10884.3 gi|20088942|ref|NP_615017.1| - 0.088 12.7 0.2 0.31 11.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2683) Steroid_dh PF02544.11 gi|20088943|ref|NP_615018.1| - 0.033 13.9 2.1 0.034 13.9 1.5 1.0 1 0 0 1 1 1 0 3-oxo-5-alpha-steroid 4-dehydrogenase Phage_int_SAM_3 PF14659.1 gi|20088945|ref|NP_615020.1| - 0.064 13.5 2.6 0.075 13.3 0.1 2.3 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Ribosomal_S8 PF00410.14 gi|20088945|ref|NP_615020.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S8 DUF4455 PF14643.1 gi|20088947|ref|NP_615022.1| - 0.0047 15.6 3.2 0.0052 15.4 2.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) SPO22 PF08631.5 gi|20088947|ref|NP_615022.1| - 0.027 13.5 0.4 0.028 13.4 0.3 1.1 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like Peptidase_M32 PF02074.10 gi|20088947|ref|NP_615022.1| - 0.031 12.9 2.3 0.033 12.8 1.6 1.0 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase DUF684 PF05075.9 gi|20088947|ref|NP_615022.1| - 0.077 11.5 0.9 0.078 11.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF684) GrpE PF01025.14 gi|20088947|ref|NP_615022.1| - 0.086 12.3 5.1 0.11 12.0 3.5 1.1 1 0 0 1 1 1 0 GrpE CaM_bdg_C0 PF10562.4 gi|20088947|ref|NP_615022.1| - 0.091 12.6 0.5 0.091 12.6 0.4 1.9 3 0 0 3 3 3 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit DUF4635 PF15466.1 gi|20088947|ref|NP_615022.1| - 0.15 11.3 4.8 0.15 11.3 2.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4635) DUF848 PF05852.6 gi|20088947|ref|NP_615022.1| - 0.19 11.5 5.8 0.22 11.3 4.0 1.1 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) RRF PF01765.14 gi|20088947|ref|NP_615022.1| - 0.23 10.9 6.9 0.27 10.6 4.8 1.1 1 0 0 1 1 1 0 Ribosome recycling factor V-ATPase_G PF03179.10 gi|20088947|ref|NP_615022.1| - 0.37 11.1 6.8 0.25 11.6 0.6 2.1 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF2570 PF10828.3 gi|20088947|ref|NP_615022.1| - 0.57 9.7 3.8 0.92 9.1 2.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) Plasmid_stabil PF05016.9 gi|20088948|ref|NP_615023.1| - 5.9e-11 42.5 0.3 7.1e-11 42.3 0.2 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Arch_ATPase PF01637.13 gi|20088949|ref|NP_615024.1| - 5.4e-38 130.9 1.2 6.3e-38 130.7 0.1 1.7 2 0 0 2 2 2 1 Archaeal ATPase DUF234 PF03008.9 gi|20088949|ref|NP_615024.1| - 9.4e-27 93.0 1.1 9.4e-27 93.0 0.7 1.9 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|20088949|ref|NP_615024.1| - 6.3e-10 39.0 0.0 1.7e-09 37.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20088949|ref|NP_615024.1| - 3.8e-05 23.8 0.0 9e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20088949|ref|NP_615024.1| - 4e-05 23.6 0.0 7.4e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.15 gi|20088949|ref|NP_615024.1| - 9.9e-05 21.9 0.1 0.00028 20.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|20088949|ref|NP_615024.1| - 0.0023 17.7 0.1 0.0067 16.2 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_18 PF13238.1 gi|20088949|ref|NP_615024.1| - 0.027 14.7 0.0 0.61 10.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain HTH_IclR PF09339.5 gi|20088949|ref|NP_615024.1| - 0.028 14.0 0.0 0.064 12.8 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Asn_synthase PF00733.16 gi|20088950|ref|NP_615025.1| - 6.3e-17 61.9 0.0 1.4e-16 60.7 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|20088950|ref|NP_615025.1| - 4.7e-06 26.3 0.0 1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.3 gi|20088950|ref|NP_615025.1| - 0.00043 19.5 0.0 0.001 18.3 0.0 1.5 1 0 0 1 1 1 1 Aluminium induced protein GATase_6 PF13522.1 gi|20088950|ref|NP_615025.1| - 0.002 18.0 0.0 0.0059 16.5 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain QueC PF06508.8 gi|20088950|ref|NP_615025.1| - 0.0029 16.9 0.0 0.0051 16.1 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_2 PF00310.16 gi|20088950|ref|NP_615025.1| - 0.056 12.1 0.0 0.1 11.2 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Meth_synt_2 PF01717.13 gi|20088952|ref|NP_615027.1| - 1.8e-05 23.8 0.1 0.0065 15.4 0.1 2.4 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.13 gi|20088953|ref|NP_615028.1| - 1.2e-05 24.5 0.0 0.00024 20.1 0.0 2.2 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Latarcin PF10279.4 gi|20088954|ref|NP_615029.1| - 0.0038 17.4 0.2 0.0043 17.2 0.1 1.1 1 0 0 1 1 1 1 Latarcin precursor RHH_1 PF01402.16 gi|20088954|ref|NP_615029.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family BLOC1_2 PF10046.4 gi|20088954|ref|NP_615029.1| - 0.024 14.7 0.0 0.024 14.7 0.0 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4113 PF13438.1 gi|20088954|ref|NP_615029.1| - 0.34 10.5 1.6 4.6 6.9 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4113) TRAM PF01938.15 gi|20088955|ref|NP_615030.1| - 5.5e-17 61.2 0.6 6.2e-17 61.1 0.4 1.0 1 0 0 1 1 1 1 TRAM domain S1 PF00575.18 gi|20088955|ref|NP_615030.1| - 0.32 11.1 1.7 0.91 9.6 1.2 1.7 1 1 1 2 2 2 0 S1 RNA binding domain TRAM PF01938.15 gi|20088956|ref|NP_615031.1| - 1.3e-16 60.0 1.1 1.5e-16 59.9 0.8 1.0 1 0 0 1 1 1 1 TRAM domain S1 PF00575.18 gi|20088956|ref|NP_615031.1| - 0.087 12.9 2.4 0.23 11.5 1.6 1.7 1 1 0 1 1 1 0 S1 RNA binding domain TRAM PF01938.15 gi|20088957|ref|NP_615032.1| - 2.9e-16 59.0 1.3 3.2e-16 58.8 0.9 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|20088957|ref|NP_615032.1| - 0.099 12.1 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) S1 PF00575.18 gi|20088957|ref|NP_615032.1| - 0.17 11.9 3.8 4.2 7.5 2.2 2.1 1 1 1 2 2 2 0 S1 RNA binding domain TRAM PF01938.15 gi|20088958|ref|NP_615033.1| - 1.3e-16 60.1 0.8 1.4e-16 59.9 0.5 1.0 1 0 0 1 1 1 1 TRAM domain S1 PF00575.18 gi|20088958|ref|NP_615033.1| - 0.095 12.7 3.1 1.5 8.9 2.3 2.0 1 1 1 2 2 2 0 S1 RNA binding domain Hexapep PF00132.19 gi|20088958|ref|NP_615033.1| - 0.11 12.0 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) DUF1670 PF07900.6 gi|20088959|ref|NP_615034.1| - 6.2e-98 326.3 4.8 7.2e-98 326.1 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20088959|ref|NP_615034.1| - 1.4e-06 27.7 0.1 0.63 9.7 0.0 4.1 3 1 1 4 4 4 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20088959|ref|NP_615034.1| - 7.5e-05 22.1 0.6 2.4 7.6 0.0 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20088959|ref|NP_615034.1| - 0.00024 20.8 0.2 0.37 10.6 0.0 2.9 1 1 2 3 3 3 2 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|20088959|ref|NP_615034.1| - 0.00033 20.8 0.1 1.7 8.9 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20088959|ref|NP_615034.1| - 0.00058 19.1 0.0 0.53 9.7 0.0 3.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|20088959|ref|NP_615034.1| - 0.0011 18.5 0.2 0.0084 15.6 0.2 2.3 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_5 PF01022.15 gi|20088959|ref|NP_615034.1| - 0.0011 18.6 0.2 0.14 11.8 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|20088959|ref|NP_615034.1| - 0.0047 17.0 0.1 12 6.1 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|20088959|ref|NP_615034.1| - 0.013 15.3 1.2 4.7 7.2 0.2 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|20088959|ref|NP_615034.1| - 0.02 14.5 0.2 10 5.8 0.0 3.0 3 0 0 3 3 3 0 HTH domain HTH_38 PF13936.1 gi|20088959|ref|NP_615034.1| - 0.027 14.0 1.2 2.5 7.7 0.1 3.3 3 1 1 4 4 4 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|20088959|ref|NP_615034.1| - 0.038 13.7 0.2 1.8 8.4 0.0 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_10 PF04967.7 gi|20088959|ref|NP_615034.1| - 0.064 12.8 0.1 0.84 9.2 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain KorB PF08535.5 gi|20088959|ref|NP_615034.1| - 0.075 13.1 0.0 0.27 11.4 0.0 2.0 1 0 0 1 1 1 0 KorB domain HTH_6 PF01418.12 gi|20088959|ref|NP_615034.1| - 0.12 12.1 0.1 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family DUF1670 PF07900.6 gi|20088960|ref|NP_615035.1| - 9.6e-89 296.3 0.3 1.2e-88 296.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_24 PF13412.1 gi|20088960|ref|NP_615035.1| - 0.00041 19.6 0.2 0.0025 17.1 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20088960|ref|NP_615035.1| - 0.0016 18.4 0.0 0.045 13.8 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|20088960|ref|NP_615035.1| - 0.0028 17.2 0.7 0.011 15.3 0.1 2.2 3 0 0 3 3 3 1 HTH domain HTH_23 PF13384.1 gi|20088960|ref|NP_615035.1| - 0.0029 17.1 0.0 11 5.8 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_29 PF13551.1 gi|20088960|ref|NP_615035.1| - 0.0031 17.6 0.1 0.4 10.8 0.0 2.9 1 1 0 2 2 2 1 Winged helix-turn helix HTH_17 PF12728.2 gi|20088960|ref|NP_615035.1| - 0.018 15.2 0.1 0.33 11.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20088960|ref|NP_615035.1| - 0.021 14.6 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|20088960|ref|NP_615035.1| - 0.022 14.4 0.1 0.059 13.0 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|20088960|ref|NP_615035.1| - 0.049 13.6 0.3 1.6 8.7 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20088960|ref|NP_615035.1| - 0.049 13.0 1.4 9.8 5.7 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20088960|ref|NP_615035.1| - 0.071 12.6 1.1 4.8 6.8 0.0 3.5 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) MarR PF01047.17 gi|20088960|ref|NP_615035.1| - 0.073 12.7 0.2 0.21 11.3 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|20088960|ref|NP_615035.1| - 0.082 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TENA_THI-4 PF03070.11 gi|20088960|ref|NP_615035.1| - 0.098 12.3 0.6 4 7.1 0.1 2.8 2 1 0 3 3 3 0 TENA/THI-4/PQQC family HTH_38 PF13936.1 gi|20088960|ref|NP_615035.1| - 0.21 11.1 2.3 0.22 11.1 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Hexapep PF00132.19 gi|20088961|ref|NP_615036.1| - 0.00092 18.6 0.1 0.024 14.1 0.0 2.8 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Bactofilin PF04519.8 gi|20088961|ref|NP_615036.1| - 0.0022 17.9 1.2 0.1 12.5 0.2 2.2 1 1 1 2 2 2 2 Polymer-forming cytoskeletal ABC_tran PF00005.22 gi|20088962|ref|NP_615037.1| - 1.5e-32 112.7 0.0 2.3e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20088962|ref|NP_615037.1| - 1.5e-09 38.2 0.0 0.00016 21.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|20088962|ref|NP_615037.1| - 5.4e-06 26.5 0.0 1.1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|20088962|ref|NP_615037.1| - 8.1e-06 26.0 0.5 8.2e-05 22.8 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|20088962|ref|NP_615037.1| - 8.2e-05 21.8 0.0 0.01 14.8 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|20088962|ref|NP_615037.1| - 0.00022 21.3 0.4 0.0022 18.1 0.3 2.2 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|20088962|ref|NP_615037.1| - 0.00079 19.1 0.0 0.035 13.8 0.0 2.3 2 0 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|20088962|ref|NP_615037.1| - 0.00095 18.6 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF258 PF03193.11 gi|20088962|ref|NP_615037.1| - 0.0011 18.2 0.1 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|20088962|ref|NP_615037.1| - 0.0019 18.1 0.0 0.0059 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|20088962|ref|NP_615037.1| - 0.0051 16.7 0.2 0.022 14.7 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20088962|ref|NP_615037.1| - 0.0051 17.6 0.1 0.06 14.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|20088962|ref|NP_615037.1| - 0.0072 15.0 0.0 0.0093 14.7 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|20088962|ref|NP_615037.1| - 0.0081 15.5 0.0 0.021 14.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|20088962|ref|NP_615037.1| - 0.016 14.9 0.3 0.072 12.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|20088962|ref|NP_615037.1| - 0.016 14.6 0.1 0.034 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|20088962|ref|NP_615037.1| - 0.018 14.7 0.3 0.061 12.9 0.0 2.0 2 1 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|20088962|ref|NP_615037.1| - 0.019 15.3 0.1 0.049 13.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|20088962|ref|NP_615037.1| - 0.023 14.1 0.1 0.17 11.2 0.0 2.0 1 1 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|20088962|ref|NP_615037.1| - 0.025 13.8 0.0 2.1 7.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20088962|ref|NP_615037.1| - 0.051 13.9 0.1 0.12 12.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain SbcCD_C PF13558.1 gi|20088962|ref|NP_615037.1| - 0.057 13.3 0.0 0.17 11.8 0.0 1.8 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|20088962|ref|NP_615037.1| - 0.081 11.5 0.4 0.35 9.4 0.0 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.10 gi|20088962|ref|NP_615037.1| - 0.085 12.5 0.5 2.9 7.5 0.1 2.3 2 0 0 2 2 2 0 NTPase UPF0079 PF02367.12 gi|20088962|ref|NP_615037.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|20088962|ref|NP_615037.1| - 0.11 12.2 1.3 0.16 11.7 0.1 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_14 PF13173.1 gi|20088962|ref|NP_615037.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|20088962|ref|NP_615037.1| - 0.12 11.8 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.11 gi|20088962|ref|NP_615037.1| - 0.13 11.4 0.0 0.28 10.4 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein BPD_transp_1 PF00528.17 gi|20088963|ref|NP_615038.1| - 4.1e-22 78.5 13.6 4.1e-22 78.5 9.4 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.1 gi|20088964|ref|NP_615039.1| - 3.4e-42 144.5 0.1 4.2e-42 144.2 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|20088964|ref|NP_615039.1| - 3.5e-22 79.0 0.0 4.6e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|20088964|ref|NP_615039.1| - 1.3e-07 31.2 0.0 1.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|20088964|ref|NP_615039.1| - 0.0009 18.5 0.0 0.0071 15.6 0.0 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.15 gi|20088964|ref|NP_615039.1| - 0.007 15.4 0.0 0.012 14.6 0.0 1.4 1 0 0 1 1 1 1 LysR substrate binding domain DUF3139 PF11337.3 gi|20088964|ref|NP_615039.1| - 0.48 10.7 2.7 20 5.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) HTH_3 PF01381.17 gi|20088966|ref|NP_615041.1| - 1.6e-08 34.2 0.0 4.4e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|20088966|ref|NP_615041.1| - 1.9e-06 27.7 0.0 4.8e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|20088966|ref|NP_615041.1| - 0.0032 17.6 0.1 0.0093 16.1 0.0 1.8 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain CENP-B_N PF04218.8 gi|20088966|ref|NP_615041.1| - 0.014 14.8 2.1 0.26 10.7 0.0 3.3 4 0 0 4 4 4 0 CENP-B N-terminal DNA-binding domain HTH_psq PF05225.11 gi|20088966|ref|NP_615041.1| - 0.016 14.7 1.5 0.93 9.0 0.0 3.1 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_31 PF13560.1 gi|20088966|ref|NP_615041.1| - 0.03 14.5 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LpxB PF02684.10 gi|20088966|ref|NP_615041.1| - 0.062 11.9 0.2 0.071 11.7 0.2 1.1 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase S-layer PF07752.6 gi|20088967|ref|NP_615042.1| - 2.3e-181 600.5 46.0 7.1e-95 317.1 11.6 2.6 2 0 0 2 2 2 2 S-layer protein BiPBP_C PF06832.7 gi|20088967|ref|NP_615042.1| - 4.7e-08 32.8 0.1 1.8 8.5 0.0 5.5 5 0 0 5 5 5 2 Penicillin-Binding Protein C-terminus Family DUF4198 PF10670.4 gi|20088967|ref|NP_615042.1| - 0.0024 17.8 12.9 0.011 15.7 0.2 4.3 5 0 0 5 5 5 2 Domain of unknown function (DUF4198) tRNA-synt_1c_C PF03950.13 gi|20088967|ref|NP_615042.1| - 0.025 14.2 2.7 1.3 8.6 0.1 3.4 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), anti-codon binding domain PEGA PF08308.6 gi|20088967|ref|NP_615042.1| - 0.22 11.3 13.4 0.47 10.2 0.1 4.9 5 0 0 5 5 5 0 PEGA domain DUF290 PF01060.18 gi|20088967|ref|NP_615042.1| - 0.3 11.1 2.5 2.6 8.1 0.3 3.5 2 0 0 2 2 2 0 Transthyretin-like family EMP24_GP25L PF01105.19 gi|20088967|ref|NP_615042.1| - 5 6.7 13.2 2.8 7.6 0.1 4.5 4 1 1 5 5 5 0 emp24/gp25L/p24 family/GOLD C1-set PF07654.10 gi|20088967|ref|NP_615042.1| - 8.8 6.4 7.5 14 5.7 0.1 3.5 3 0 0 3 3 3 0 Immunoglobulin C1-set domain AIRS PF00586.19 gi|20088968|ref|NP_615043.1| - 2.2e-21 75.8 0.2 4.1e-21 75.0 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|20088968|ref|NP_615043.1| - 1.2e-09 38.2 0.0 2.4e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.16 gi|20088970|ref|NP_615045.1| - 3.3e-17 63.1 0.0 5.2e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20088970|ref|NP_615045.1| - 3.6e-09 36.8 0.0 6.3e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20088970|ref|NP_615045.1| - 5.3e-09 36.1 0.0 1.2e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain NRDD PF13597.1 gi|20088971|ref|NP_615046.1| - 2.9e-170 566.9 0.0 3.5e-170 566.7 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Rad51 PF08423.6 gi|20088973|ref|NP_615048.1| - 6.6e-32 110.4 0.2 8e-32 110.1 0.1 1.1 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|20088973|ref|NP_615048.1| - 1e-13 50.9 0.3 1.3e-12 47.3 0.2 2.0 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|20088973|ref|NP_615048.1| - 2e-13 50.2 0.0 3e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|20088973|ref|NP_615048.1| - 9.4e-10 38.0 0.1 1.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|20088973|ref|NP_615048.1| - 1.2e-06 28.0 0.0 1.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|20088973|ref|NP_615048.1| - 2.6e-05 23.0 0.2 0.00024 19.8 0.1 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.12 gi|20088973|ref|NP_615048.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein SRP54 PF00448.17 gi|20088973|ref|NP_615048.1| - 0.00017 21.0 0.0 0.00021 20.7 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|20088973|ref|NP_615048.1| - 0.00075 18.7 0.1 0.0014 17.8 0.1 1.4 1 0 0 1 1 1 1 PhoH-like protein CbiA PF01656.18 gi|20088973|ref|NP_615048.1| - 0.0039 16.6 0.0 0.0054 16.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.4 gi|20088973|ref|NP_615048.1| - 0.0046 15.9 0.0 0.0058 15.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|20088973|ref|NP_615048.1| - 0.013 14.4 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|20088973|ref|NP_615048.1| - 0.017 14.8 0.1 0.039 13.6 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|20088973|ref|NP_615048.1| - 0.019 14.4 0.0 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain UvrD-helicase PF00580.16 gi|20088973|ref|NP_615048.1| - 0.024 13.9 0.1 0.036 13.3 0.1 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_30 PF13604.1 gi|20088973|ref|NP_615048.1| - 0.043 13.4 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|20088973|ref|NP_615048.1| - 0.044 13.5 0.1 0.098 12.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|20088973|ref|NP_615048.1| - 0.055 13.0 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|20088973|ref|NP_615048.1| - 0.067 13.3 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAXNEB PF05625.6 gi|20088973|ref|NP_615048.1| - 0.073 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein AAA_31 PF13614.1 gi|20088973|ref|NP_615048.1| - 0.08 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|20088973|ref|NP_615048.1| - 0.086 12.6 0.0 0.24 11.1 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|20088973|ref|NP_615048.1| - 0.11 13.3 0.0 0.43 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain MipZ PF09140.6 gi|20088973|ref|NP_615048.1| - 0.11 11.4 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ NAD_binding_5 PF07994.7 gi|20088974|ref|NP_615049.1| - 5.4e-59 200.1 0.0 1.5e-58 198.6 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|20088974|ref|NP_615049.1| - 1.1e-33 115.3 0.0 1.8e-33 114.6 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase IF-2B PF01008.12 gi|20088975|ref|NP_615050.1| - 6.6e-80 268.0 0.0 8e-80 267.8 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Peroxin-22 PF12827.2 gi|20088975|ref|NP_615050.1| - 0.033 13.9 0.0 0.082 12.6 0.0 1.7 1 0 0 1 1 1 0 Peroxisomal biogenesis protein family Abhydrolase_5 PF12695.2 gi|20088976|ref|NP_615051.1| - 1.1e-14 54.3 0.0 1.5e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|20088976|ref|NP_615051.1| - 3.6e-10 38.8 0.0 2.6e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|20088976|ref|NP_615051.1| - 1.6e-08 34.7 0.0 2.2e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|20088976|ref|NP_615051.1| - 5e-06 25.8 0.0 0.00015 21.0 0.0 2.1 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|20088976|ref|NP_615051.1| - 0.00045 19.5 0.0 0.00076 18.8 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|20088976|ref|NP_615051.1| - 0.0079 15.7 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|20088976|ref|NP_615051.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Arch_ATPase PF01637.13 gi|20088977|ref|NP_615052.1| - 2.2e-11 43.8 2.2 3.9e-11 43.1 1.5 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA-ATPase_like PF09820.4 gi|20088977|ref|NP_615052.1| - 6.9e-06 25.4 0.4 6.9e-06 25.4 0.3 1.7 2 0 0 2 2 2 1 Predicted AAA-ATPase AAA_16 PF13191.1 gi|20088977|ref|NP_615052.1| - 0.00016 21.6 0.0 0.00059 19.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|20088977|ref|NP_615052.1| - 0.0038 17.1 1.9 0.055 13.3 0.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_35 PF14516.1 gi|20088977|ref|NP_615052.1| - 0.017 13.7 0.0 0.046 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain RepA_N PF06970.6 gi|20088977|ref|NP_615052.1| - 0.099 12.4 0.3 0.099 12.4 0.2 2.2 2 0 0 2 2 2 0 Replication initiator protein A (RepA) N-terminus TPR_1 PF00515.23 gi|20088978|ref|NP_615053.1| - 3.6e-16 57.9 4.5 0.00036 20.0 0.1 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20088978|ref|NP_615053.1| - 4.7e-16 58.2 2.1 2e-10 40.1 0.1 3.3 3 1 0 3 3 2 2 TPR repeat TPR_16 PF13432.1 gi|20088978|ref|NP_615053.1| - 2.4e-15 56.7 0.0 2.8e-07 31.0 0.0 3.7 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20088978|ref|NP_615053.1| - 6.5e-14 50.6 3.3 0.001 18.8 0.1 5.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20088978|ref|NP_615053.1| - 4.4e-13 49.3 1.8 0.0001 22.5 0.5 3.7 2 1 1 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20088978|ref|NP_615053.1| - 6.1e-13 48.7 3.9 2.1e-07 30.9 0.1 3.4 2 1 2 4 4 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|20088978|ref|NP_615053.1| - 7.1e-10 38.6 0.1 0.041 14.5 0.0 5.8 3 1 3 6 6 5 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20088978|ref|NP_615053.1| - 5.4e-09 35.7 1.7 6.2e-06 25.9 0.0 3.4 3 1 2 5 5 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20088978|ref|NP_615053.1| - 1.1e-08 34.5 1.1 0.19 11.9 0.0 3.7 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20088978|ref|NP_615053.1| - 8.3e-08 31.4 8.6 0.12 12.1 0.1 5.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20088978|ref|NP_615053.1| - 1.2e-07 31.5 2.0 0.0013 18.6 0.3 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat AAA_16 PF13191.1 gi|20088978|ref|NP_615053.1| - 2.1e-06 27.8 0.0 8e-06 25.9 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain HTH_24 PF13412.1 gi|20088978|ref|NP_615053.1| - 0.00011 21.4 0.0 0.00033 19.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TPR_6 PF13174.1 gi|20088978|ref|NP_615053.1| - 0.00018 21.7 0.3 0.27 11.7 0.0 4.3 4 0 0 4 4 3 1 Tetratricopeptide repeat MarR PF01047.17 gi|20088978|ref|NP_615053.1| - 0.00026 20.6 0.0 0.00065 19.3 0.0 1.7 1 0 0 1 1 1 1 MarR family TPR_7 PF13176.1 gi|20088978|ref|NP_615053.1| - 0.00027 20.5 0.5 3.2 7.7 0.0 4.0 4 0 0 4 4 3 1 Tetratricopeptide repeat MarR_2 PF12802.2 gi|20088978|ref|NP_615053.1| - 0.00049 19.7 0.1 0.0012 18.5 0.1 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|20088978|ref|NP_615053.1| - 0.00076 19.3 0.0 0.0026 17.6 0.0 2.0 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|20088978|ref|NP_615053.1| - 0.001 18.7 0.0 0.0034 17.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|20088978|ref|NP_615053.1| - 0.011 15.4 1.5 0.048 13.3 0.1 2.8 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB Fis1_TPR_C PF14853.1 gi|20088978|ref|NP_615053.1| - 0.014 15.2 0.7 7.4 6.5 0.0 3.5 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat AAA_14 PF13173.1 gi|20088978|ref|NP_615053.1| - 0.015 15.2 0.6 0.015 15.2 0.4 3.8 3 2 0 4 4 4 0 AAA domain HTH_27 PF13463.1 gi|20088978|ref|NP_615053.1| - 0.025 14.9 0.0 0.086 13.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|20088978|ref|NP_615053.1| - 0.025 14.3 0.0 0.058 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_22 PF13401.1 gi|20088978|ref|NP_615053.1| - 0.034 14.2 0.0 0.15 12.1 0.0 2.1 1 0 0 1 1 1 0 AAA domain YfiO PF13525.1 gi|20088978|ref|NP_615053.1| - 0.036 13.5 0.3 0.95 8.8 0.0 2.5 1 1 1 2 2 2 0 Outer membrane lipoprotein HTH_34 PF13601.1 gi|20088978|ref|NP_615053.1| - 0.047 13.7 0.2 0.56 10.2 0.0 2.8 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|20088978|ref|NP_615053.1| - 0.048 13.3 0.0 0.2 11.3 0.0 2.2 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|20088978|ref|NP_615053.1| - 0.064 13.3 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator BTAD PF03704.12 gi|20088978|ref|NP_615053.1| - 0.095 12.9 0.1 2.5 8.3 0.0 2.5 1 1 1 2 2 2 0 Bacterial transcriptional activator domain Cyc-maltodext_C PF10438.4 gi|20088978|ref|NP_615053.1| - 0.73 9.9 3.6 2.1 8.4 0.0 3.5 4 0 0 4 4 4 0 Cyclo-malto-dextrinase C-terminal domain MutS_V PF00488.16 gi|20088979|ref|NP_615054.1| - 2.7e-08 33.5 0.0 4.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 MutS domain V HHH_2 PF12826.2 gi|20088979|ref|NP_615054.1| - 0.012 15.5 0.1 0.053 13.4 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA_23 PF13476.1 gi|20088979|ref|NP_615054.1| - 0.075 13.3 3.5 1.4 9.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain ComC PF03047.9 gi|20088979|ref|NP_615054.1| - 6 6.3 6.7 20 4.7 2.0 2.6 2 0 0 2 2 2 0 COMC family PP_kinase_C PF13090.1 gi|20088980|ref|NP_615055.1| - 3.6e-151 502.7 0.0 4.5e-151 502.4 0.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|20088980|ref|NP_615055.1| - 6.9e-63 211.8 0.1 1.9e-62 210.4 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|20088980|ref|NP_615055.1| - 7.3e-37 125.8 0.9 2.1e-36 124.3 0.2 2.1 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|20088980|ref|NP_615055.1| - 5.7e-10 39.0 0.0 6.7e-06 25.8 0.0 2.8 1 1 1 2 2 2 2 PLD-like domain Succ_CoA_lig PF13607.1 gi|20088980|ref|NP_615055.1| - 0.022 14.3 0.4 0.042 13.4 0.2 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Ppx-GppA PF02541.11 gi|20088982|ref|NP_615057.1| - 4.3e-62 209.8 0.1 6.6e-62 209.2 0.1 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.17 gi|20088982|ref|NP_615057.1| - 2e-09 37.4 2.9 2.3e-09 37.2 1.0 1.8 2 0 0 2 2 2 1 HD domain FtsA PF14450.1 gi|20088982|ref|NP_615057.1| - 0.00041 20.1 0.1 0.13 12.1 0.0 2.8 2 1 0 2 2 2 2 Cell division protein FtsA CHAD PF05235.9 gi|20088983|ref|NP_615058.1| - 2.2e-53 181.2 1.5 2.2e-53 181.2 1.0 1.9 2 0 0 2 2 2 1 CHAD domain CYTH PF01928.16 gi|20088983|ref|NP_615058.1| - 2.9e-30 105.3 1.6 2.9e-30 105.3 1.1 2.3 2 1 0 2 2 2 1 CYTH domain DUF2521 PF10730.4 gi|20088983|ref|NP_615058.1| - 0.0076 16.0 0.5 0.023 14.4 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2521) Peptidase_S49_N PF08496.5 gi|20088983|ref|NP_615058.1| - 2 8.1 10.9 0.47 10.2 4.9 1.8 2 0 0 2 2 2 0 Peptidase family S49 N-terminal AAA_16 PF13191.1 gi|20088984|ref|NP_615059.1| - 2.7e-12 47.0 0.0 6.6e-12 45.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Cdc6_C PF09079.6 gi|20088984|ref|NP_615059.1| - 4.4e-09 35.9 0.3 1.5e-07 30.9 0.0 2.6 1 1 1 2 2 2 1 CDC6, C terminal AAA PF00004.24 gi|20088984|ref|NP_615059.1| - 1e-06 28.9 0.0 2.3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|20088984|ref|NP_615059.1| - 5.6e-06 26.5 0.0 1.2e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|20088984|ref|NP_615059.1| - 0.00011 21.8 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|20088984|ref|NP_615059.1| - 0.0012 18.5 0.2 0.0049 16.5 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain IstB_IS21 PF01695.12 gi|20088984|ref|NP_615059.1| - 0.0053 16.1 0.2 0.58 9.5 0.1 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|20088984|ref|NP_615059.1| - 0.012 14.5 0.0 0.051 12.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_32 PF13654.1 gi|20088984|ref|NP_615059.1| - 0.014 14.1 0.0 1 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF835 PF05763.7 gi|20088984|ref|NP_615059.1| - 0.019 14.5 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Arch_ATPase PF01637.13 gi|20088984|ref|NP_615059.1| - 0.02 14.5 0.0 0.057 13.1 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase AAA_5 PF07728.9 gi|20088984|ref|NP_615059.1| - 0.025 14.3 0.0 0.056 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|20088984|ref|NP_615059.1| - 0.033 13.5 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|20088984|ref|NP_615059.1| - 0.047 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.7 gi|20088984|ref|NP_615059.1| - 0.049 12.6 0.0 0.078 12.0 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|20088984|ref|NP_615059.1| - 0.061 13.0 0.1 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 NTPase Penicillinase_R PF03965.11 gi|20088984|ref|NP_615059.1| - 0.061 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor Zeta_toxin PF06414.7 gi|20088984|ref|NP_615059.1| - 0.069 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|20088984|ref|NP_615059.1| - 0.081 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cpn60_TCP1 PF00118.19 gi|20088985|ref|NP_615060.1| - 7.3e-168 559.1 14.8 8.3e-168 558.9 10.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HSP70 PF00012.15 gi|20088986|ref|NP_615061.1| - 3.7e-185 616.3 5.0 1.2e-156 522.2 1.6 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|20088986|ref|NP_615061.1| - 7.1e-15 54.4 1.7 1.8e-14 53.1 1.2 1.6 1 1 0 1 1 1 1 MreB/Mbl protein FtsA PF14450.1 gi|20088986|ref|NP_615061.1| - 2.2e-06 27.4 3.2 0.057 13.2 0.8 3.5 2 2 0 2 2 2 2 Cell division protein FtsA StbA PF06406.6 gi|20088986|ref|NP_615061.1| - 0.0012 17.8 1.0 0.64 8.9 0.1 2.7 2 1 1 3 3 3 2 StbA protein FGGY_C PF02782.11 gi|20088986|ref|NP_615061.1| - 0.0022 17.6 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|20088986|ref|NP_615061.1| - 0.02 14.2 0.2 0.72 9.0 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Hydantoinase_A PF01968.13 gi|20088986|ref|NP_615061.1| - 0.14 11.2 1.7 3.4 6.6 0.1 2.7 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase DnaJ PF00226.26 gi|20088987|ref|NP_615062.1| - 4.9e-21 74.2 6.2 8.9e-21 73.3 4.3 1.4 1 0 0 1 1 1 1 DnaJ domain DUF169 PF02596.10 gi|20088988|ref|NP_615063.1| - 4.4e-65 219.1 0.0 5.3e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 tRNA-synt_2d PF01409.15 gi|20088989|ref|NP_615064.1| - 1e-55 188.6 0.0 1.8e-50 171.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|20088989|ref|NP_615064.1| - 0.00066 19.2 0.1 0.003 17.1 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|20088989|ref|NP_615064.1| - 0.048 12.4 0.1 1.3 7.6 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Translin PF01997.11 gi|20088990|ref|NP_615065.1| - 2.1e-38 131.9 0.1 2.5e-38 131.6 0.0 1.0 1 0 0 1 1 1 1 Translin family UPF0147 PF03685.8 gi|20088991|ref|NP_615066.1| - 8e-37 124.9 1.5 9.5e-37 124.7 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|20088991|ref|NP_615066.1| - 0.0029 17.6 0.1 0.75 9.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) SNF2_assoc PF08455.5 gi|20088991|ref|NP_615066.1| - 0.066 11.7 0.1 0.089 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial SNF2 helicase associated Mating_N PF12731.2 gi|20088991|ref|NP_615066.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Mating-type protein beta 1 Auto_anti-p27 PF06677.7 gi|20088992|ref|NP_615067.1| - 8.7e-17 60.6 1.0 1.3e-16 60.0 0.7 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SAGA-Tad1 PF12767.2 gi|20088992|ref|NP_615067.1| - 0.016 14.8 6.4 0.01 15.4 3.2 1.5 1 1 1 2 2 2 0 Transcriptional regulator of RNA polII, SAGA, subunit DUF3420 PF11900.3 gi|20088992|ref|NP_615067.1| - 7.5 6.7 7.5 1.4 9.0 1.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3420) MULE PF10551.4 gi|20088994|ref|NP_615069.1| - 8.7e-13 48.2 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20088994|ref|NP_615069.1| - 0.023 13.2 0.0 0.037 12.5 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20088994|ref|NP_615069.1| - 0.027 14.2 0.3 0.076 12.8 0.1 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20088994|ref|NP_615069.1| - 0.037 13.6 0.4 0.051 13.1 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20088994|ref|NP_615069.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20088994|ref|NP_615069.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20088994|ref|NP_615069.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20088994|ref|NP_615069.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger ERCC4 PF02732.10 gi|20088995|ref|NP_615070.1| - 6.4e-27 94.0 0.0 1.7e-26 92.6 0.0 1.8 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|20088995|ref|NP_615070.1| - 1.8e-19 69.3 0.2 6.3e-19 67.6 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|20088995|ref|NP_615070.1| - 2e-18 66.4 0.0 8.5e-18 64.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|20088995|ref|NP_615070.1| - 1e-13 51.4 0.1 4e-13 49.6 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|20088995|ref|NP_615070.1| - 2.6e-10 40.3 0.1 1e-09 38.3 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|20088995|ref|NP_615070.1| - 2.9e-10 39.8 0.0 8.5e-10 38.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|20088995|ref|NP_615070.1| - 1.2e-05 24.7 0.1 6.9e-05 22.3 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|20088995|ref|NP_615070.1| - 0.0007 18.4 0.0 0.0012 17.6 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain 5_3_exonuc PF01367.15 gi|20088995|ref|NP_615070.1| - 0.002 18.3 1.3 0.0096 16.1 0.0 2.7 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Peptidase_C80 PF11713.3 gi|20088995|ref|NP_615070.1| - 0.037 13.8 0.0 0.094 12.5 0.0 1.6 1 0 0 1 1 1 0 Peptidase C80 family HHH_8 PF14716.1 gi|20088995|ref|NP_615070.1| - 0.04 14.1 0.4 0.24 11.6 0.2 2.5 1 1 0 1 1 1 0 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|20088995|ref|NP_615070.1| - 0.05 13.5 0.1 0.58 10.1 0.0 2.7 1 1 0 1 1 1 0 Helix-hairpin-helix motif tRNA-synt_2b PF00587.20 gi|20088996|ref|NP_615071.1| - 2.4e-58 196.5 0.3 3.5e-58 196.0 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|20088996|ref|NP_615071.1| - 2.9e-21 75.1 0.8 3.8e-20 71.6 0.0 2.9 3 0 0 3 3 3 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|20088996|ref|NP_615071.1| - 0.049 13.5 2.7 0.34 10.9 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain tRNA_anti-codon PF01336.20 gi|20088997|ref|NP_615072.1| - 0.0066 16.2 0.3 0.015 15.1 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain NTP_transf_2 PF01909.18 gi|20088998|ref|NP_615073.1| - 9.6e-09 35.4 0.3 1.2e-08 35.1 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|20088998|ref|NP_615073.1| - 0.069 12.7 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NTP_transf_2 PF01909.18 gi|20088999|ref|NP_615074.1| - 6.7e-15 55.1 0.2 7.5e-15 55.0 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|20088999|ref|NP_615074.1| - 0.069 12.6 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.12 gi|20089000|ref|NP_615075.1| - 5.2e-27 93.8 0.1 6.4e-27 93.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|20089001|ref|NP_615076.1| - 1.1e-17 64.1 0.8 1.2e-17 63.9 0.5 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|20089001|ref|NP_615076.1| - 0.096 12.7 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm DUF294 PF03445.8 gi|20089001|ref|NP_615076.1| - 0.1 12.1 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Grp1_Fun34_YaaH PF01184.14 gi|20089002|ref|NP_615077.1| - 3.6e-41 140.8 17.9 4.2e-41 140.5 12.4 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family SurE PF01975.12 gi|20089003|ref|NP_615078.1| - 6.1e-56 188.8 0.0 7.4e-56 188.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Radical_SAM PF04055.16 gi|20089004|ref|NP_615079.1| - 1.5e-32 113.0 0.4 9.5e-32 110.4 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|20089004|ref|NP_615079.1| - 1.2e-25 89.6 0.1 1.8e-25 89.1 0.1 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|20089004|ref|NP_615079.1| - 1.8e-07 31.3 0.4 9.7e-07 28.9 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20089004|ref|NP_615079.1| - 1.3e-06 28.4 0.7 2.7e-06 27.4 0.5 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain GATase_3 PF07685.9 gi|20089005|ref|NP_615080.1| - 3.1e-29 101.5 0.0 5e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|20089005|ref|NP_615080.1| - 5.4e-25 87.9 0.1 8.9e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|20089005|ref|NP_615080.1| - 2.9e-20 72.7 3.5 1.3e-17 64.0 2.5 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|20089005|ref|NP_615080.1| - 0.074 12.7 0.2 0.26 10.9 0.2 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|20089005|ref|NP_615080.1| - 0.09 12.4 0.1 0.9 9.2 0.1 2.2 2 0 0 2 2 2 0 NTPase DUF1611 PF07755.6 gi|20089005|ref|NP_615080.1| - 0.097 11.3 0.5 0.22 10.1 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1611) CTP_synth_N PF06418.9 gi|20089005|ref|NP_615080.1| - 0.11 11.5 0.1 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 CTP synthase N-terminus PRK PF00485.13 gi|20089005|ref|NP_615080.1| - 0.13 11.7 0.3 12 5.3 0.0 2.3 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family adh_short PF00106.20 gi|20089006|ref|NP_615081.1| - 2e-33 115.6 0.1 2.4e-33 115.3 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|20089006|ref|NP_615081.1| - 6e-28 98.2 0.1 7.3e-28 97.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|20089006|ref|NP_615081.1| - 9.3e-15 54.7 0.1 1.3e-14 54.2 0.1 1.2 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.10 gi|20089006|ref|NP_615081.1| - 1.4e-05 24.1 0.2 1.9e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|20089006|ref|NP_615081.1| - 0.00018 21.0 0.1 0.00025 20.5 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|20089006|ref|NP_615081.1| - 0.00034 20.6 0.0 0.00076 19.5 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|20089006|ref|NP_615081.1| - 0.00081 19.7 1.3 0.0022 18.3 0.4 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3Beta_HSD PF01073.14 gi|20089006|ref|NP_615081.1| - 0.003 16.2 0.1 0.0038 15.9 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DFP PF04127.10 gi|20089006|ref|NP_615081.1| - 0.0097 15.5 0.1 0.019 14.5 0.1 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein NmrA PF05368.8 gi|20089006|ref|NP_615081.1| - 0.013 14.7 0.5 0.021 14.0 0.3 1.3 1 0 0 1 1 1 0 NmrA-like family THF_DHG_CYH_C PF02882.14 gi|20089006|ref|NP_615081.1| - 0.048 12.7 0.1 0.12 11.4 0.0 1.8 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.13 gi|20089006|ref|NP_615081.1| - 0.082 12.5 0.7 0.14 11.8 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|20089006|ref|NP_615081.1| - 0.092 11.6 0.1 0.15 10.9 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Shikimate_DH PF01488.15 gi|20089006|ref|NP_615081.1| - 0.11 12.5 0.2 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Glyoxalase_2 PF12681.2 gi|20089007|ref|NP_615082.1| - 1.1e-19 70.9 0.0 2e-19 70.2 0.0 1.3 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|20089007|ref|NP_615082.1| - 8.9e-05 22.4 0.5 0.0011 18.9 0.2 2.2 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DivIC PF04977.10 gi|20089007|ref|NP_615082.1| - 0.09 12.2 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 Septum formation initiator DNA_primase_lrg PF04104.9 gi|20089008|ref|NP_615083.1| - 1.6e-35 122.6 0.0 4e-35 121.3 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|20089009|ref|NP_615084.1| - 1.9e-12 46.7 0.4 4.3e-12 45.6 0.1 1.7 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|20089009|ref|NP_615084.1| - 1.7e-10 40.8 0.0 4.5e-10 39.5 0.0 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|20089009|ref|NP_615084.1| - 6.4e-05 22.2 0.0 0.00061 18.9 0.0 2.0 2 0 0 2 2 2 1 Rad9 TFIIS_C PF01096.13 gi|20089011|ref|NP_615086.1| - 2.3e-18 65.5 3.6 2.3e-18 65.5 2.5 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|20089011|ref|NP_615086.1| - 2e-07 30.5 3.4 2e-07 30.5 2.3 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|20089011|ref|NP_615086.1| - 2.8e-05 23.8 9.9 0.0045 16.7 1.1 2.5 2 1 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|20089011|ref|NP_615086.1| - 6.7e-05 22.6 10.5 0.00012 21.7 0.4 2.4 2 1 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20089011|ref|NP_615086.1| - 0.00018 21.1 10.4 0.0014 18.2 1.0 2.6 1 1 1 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|20089011|ref|NP_615086.1| - 0.00079 18.6 8.8 0.04 13.2 1.0 2.9 2 1 0 2 2 2 2 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|20089011|ref|NP_615086.1| - 0.0015 17.9 9.9 1.1 8.7 0.1 3.9 4 0 0 4 4 4 2 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.7 gi|20089011|ref|NP_615086.1| - 0.0017 17.9 0.4 0.0017 17.9 0.3 2.8 3 0 0 3 3 3 1 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|20089011|ref|NP_615086.1| - 0.0032 16.6 11.8 0.26 10.5 0.3 4.0 4 0 0 4 4 4 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|20089011|ref|NP_615086.1| - 0.0041 16.6 12.7 0.71 9.5 0.5 4.2 3 1 1 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|20089011|ref|NP_615086.1| - 0.0043 16.4 18.0 1.3 8.6 0.3 4.0 3 1 1 4 4 4 2 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|20089011|ref|NP_615086.1| - 0.0099 15.6 0.4 0.0099 15.6 0.3 2.7 2 1 0 2 2 2 1 zinc-ribbons zinc_ribbon_4 PF13717.1 gi|20089011|ref|NP_615086.1| - 0.01 15.5 14.0 0.88 9.3 0.7 4.2 3 1 1 4 4 4 2 zinc-ribbon domain DUF2387 PF09526.5 gi|20089011|ref|NP_615086.1| - 0.011 15.6 0.2 0.011 15.6 0.1 2.3 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|20089011|ref|NP_615086.1| - 0.013 15.4 12.5 2.6 8.0 0.1 4.1 4 0 0 4 4 4 0 Zinc ribbon domain Ribosomal_S27e PF01667.12 gi|20089011|ref|NP_615086.1| - 0.013 14.9 5.6 0.28 10.7 0.0 3.4 3 1 0 3 3 3 0 Ribosomal protein S27 Prok-RING_1 PF14446.1 gi|20089011|ref|NP_615086.1| - 0.028 14.1 6.8 0.67 9.7 0.4 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Terminase_GpA PF05876.7 gi|20089011|ref|NP_615086.1| - 0.067 11.5 5.9 0.022 13.1 1.2 1.9 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) FYVE PF01363.16 gi|20089011|ref|NP_615086.1| - 0.086 12.7 9.3 0.36 10.7 6.4 2.1 1 1 0 1 1 1 0 FYVE zinc finger Nudix_N_2 PF14803.1 gi|20089011|ref|NP_615086.1| - 0.096 12.3 9.4 3.5 7.4 0.5 3.9 3 1 0 3 3 3 0 Nudix N-terminal DUF3797 PF12677.2 gi|20089011|ref|NP_615086.1| - 0.1 12.2 13.7 0.14 11.7 0.1 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) C1_1 PF00130.17 gi|20089011|ref|NP_615086.1| - 0.11 12.2 8.5 0.84 9.4 1.4 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.1 gi|20089011|ref|NP_615086.1| - 0.12 12.7 7.6 0.19 12.0 0.6 3.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar HypA PF01155.14 gi|20089011|ref|NP_615086.1| - 0.12 12.0 9.5 0.23 11.1 0.8 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|20089011|ref|NP_615086.1| - 0.23 11.3 11.6 23 4.9 5.3 3.2 2 1 0 2 2 2 0 IBR domain UPF0547 PF10571.4 gi|20089011|ref|NP_615086.1| - 0.3 10.8 0.0 0.3 10.8 0.0 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Stc1 PF12898.2 gi|20089011|ref|NP_615086.1| - 0.32 11.0 5.4 6.8 6.8 0.2 2.4 1 1 1 2 2 2 0 Stc1 domain zf-BED PF02892.10 gi|20089011|ref|NP_615086.1| - 0.4 10.4 5.4 5.5 6.8 1.1 3.1 3 0 0 3 3 3 0 BED zinc finger GFA PF04828.9 gi|20089011|ref|NP_615086.1| - 0.51 10.3 12.4 0.4 10.6 0.5 3.7 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Baculo_LEF5_C PF11792.3 gi|20089011|ref|NP_615086.1| - 0.58 9.5 0.1 0.58 9.5 0.1 3.5 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-ISL3 PF14690.1 gi|20089011|ref|NP_615086.1| - 0.71 9.9 10.6 8.9 6.4 0.0 4.0 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Desulfoferrod_N PF06397.7 gi|20089011|ref|NP_615086.1| - 0.75 9.2 11.2 2.3 7.6 0.1 3.5 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain PolC_DP2 PF03833.8 gi|20089011|ref|NP_615086.1| - 0.8 7.2 3.6 0.2 9.2 0.2 1.6 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|20089011|ref|NP_615086.1| - 0.84 9.5 8.2 3.4 7.6 0.6 2.3 1 1 1 2 2 2 0 TerY-C metal binding domain zf-H2C2_2 PF13465.1 gi|20089011|ref|NP_615086.1| - 1.1 9.7 13.3 7 7.1 0.3 3.7 3 1 1 4 4 3 0 Zinc-finger double domain Auto_anti-p27 PF06677.7 gi|20089011|ref|NP_615086.1| - 1.3 8.8 16.7 0.3 10.8 4.1 3.2 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-HIT PF04438.11 gi|20089011|ref|NP_615086.1| - 1.3 8.6 16.8 3.7 7.2 4.1 3.3 3 1 0 3 3 3 0 HIT zinc finger C1_4 PF07975.7 gi|20089011|ref|NP_615086.1| - 1.4 9.0 10.0 22 5.1 0.0 3.6 2 1 1 3 3 3 0 TFIIH C1-like domain A2L_zn_ribbon PF08792.5 gi|20089011|ref|NP_615086.1| - 1.6 8.3 15.3 0.25 10.8 1.4 3.4 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-DNA_Pol PF08996.5 gi|20089011|ref|NP_615086.1| - 1.7 7.9 6.2 0.41 9.9 0.3 2.3 1 1 2 3 3 3 0 DNA Polymerase alpha zinc finger YhfH PF14149.1 gi|20089011|ref|NP_615086.1| - 1.9 8.3 13.1 13 5.6 0.2 3.8 3 1 1 4 4 4 0 YhfH-like protein zf-C4_Topoisom PF01396.14 gi|20089011|ref|NP_615086.1| - 2.1 7.9 12.5 0.85 9.1 0.5 3.8 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-AN1 PF01428.11 gi|20089011|ref|NP_615086.1| - 2.2 8.2 14.6 13 5.7 3.1 3.2 3 0 0 3 3 3 0 AN1-like Zinc finger Zn_ribbon_recom PF13408.1 gi|20089011|ref|NP_615086.1| - 2.4 8.4 9.9 3.4 8.0 0.5 2.9 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain RRN7 PF11781.3 gi|20089011|ref|NP_615086.1| - 2.5 7.6 13.2 6.3 6.3 0.1 3.4 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-CHY PF05495.7 gi|20089011|ref|NP_615086.1| - 2.6 8.2 8.8 5.2 7.3 1.1 2.6 2 1 0 2 2 2 0 CHY zinc finger PADR1 PF08063.7 gi|20089011|ref|NP_615086.1| - 2.8 7.3 8.6 3.9 6.9 1.1 3.0 3 0 0 3 3 3 0 PADR1 (NUC008) domain zf-UBR PF02207.15 gi|20089011|ref|NP_615086.1| - 3.4 7.4 9.4 7 6.4 2.2 2.8 1 1 2 3 3 3 0 Putative zinc finger in N-recognin (UBR box) zf-RING_4 PF14570.1 gi|20089011|ref|NP_615086.1| - 3.5 7.2 10.7 2.6 7.6 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-C2H2_4 PF13894.1 gi|20089011|ref|NP_615086.1| - 4.3 7.8 8.7 47 4.6 0.3 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger zf-LITAF-like PF10601.4 gi|20089011|ref|NP_615086.1| - 4.6 7.1 10.1 16 5.4 0.0 3.3 3 1 0 3 3 3 0 LITAF-like zinc ribbon domain Baculo_ME53 PF06061.6 gi|20089011|ref|NP_615086.1| - 4.6 6.1 8.4 0.94 8.3 0.3 2.4 2 1 1 3 3 3 0 Baculoviridae ME53 ArfGap PF01412.13 gi|20089011|ref|NP_615086.1| - 4.9 6.9 6.0 2.5 7.9 0.3 2.3 2 0 0 2 2 2 0 Putative GTPase activating protein for Arf Tnp_zf-ribbon_2 PF13842.1 gi|20089011|ref|NP_615086.1| - 6.5 7.2 10.6 31 5.0 0.0 3.3 3 1 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon DUF2318 PF10080.4 gi|20089011|ref|NP_615086.1| - 6.8 6.5 8.2 0.47 10.2 0.9 2.5 1 1 1 3 3 3 0 Predicted membrane protein (DUF2318) Rep_fac-A_C PF08646.5 gi|20089011|ref|NP_615086.1| - 9.2 5.9 8.8 0.49 10.0 0.7 2.4 1 1 2 3 3 3 0 Replication factor-A C terminal domain GCC2_GCC3 PF07699.8 gi|20089011|ref|NP_615086.1| - 9.9 5.8 12.9 2.4 7.7 1.2 2.8 2 2 0 2 2 2 0 GCC2 and GCC3 NUDIX PF00293.23 gi|20089012|ref|NP_615087.1| - 4.5e-19 68.4 0.0 5.2e-19 68.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Exosortase_EpsH PF09721.5 gi|20089013|ref|NP_615088.1| - 2.1e-55 187.8 17.2 2.4e-55 187.5 11.9 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PRCH PF03967.8 gi|20089013|ref|NP_615088.1| - 0.025 14.1 0.1 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 Photosynthetic reaction centre, H-chain N-terminal region COX2_TM PF02790.10 gi|20089013|ref|NP_615088.1| - 0.89 9.5 6.3 6.3 6.8 0.1 2.8 2 1 1 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane domain PS_Dcarbxylase PF02666.10 gi|20089014|ref|NP_615089.1| - 2e-31 108.8 1.8 1.2e-25 89.9 0.2 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.1 gi|20089014|ref|NP_615089.1| - 0.0011 18.6 0.2 2.5 7.8 0.0 3.7 1 1 3 4 4 4 2 RnfC Barrel sandwich hybrid domain CDP-OH_P_transf PF01066.16 gi|20089015|ref|NP_615090.1| - 4.6e-12 46.1 17.9 1.3e-10 41.5 12.4 2.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF4267 PF14087.1 gi|20089015|ref|NP_615090.1| - 2.5 7.7 6.8 0.33 10.5 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4267) CTP_transf_1 PF01148.15 gi|20089015|ref|NP_615090.1| - 5.1 6.6 16.6 2.7 7.5 9.0 1.9 2 0 0 2 2 2 0 Cytidylyltransferase family DUF381 PF04038.7 gi|20089016|ref|NP_615091.1| - 2.3e-28 98.0 0.2 3.1e-28 97.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|20089016|ref|NP_615091.1| - 1.5e-22 78.7 0.0 2.2e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) Aminotran_1_2 PF00155.16 gi|20089017|ref|NP_615092.1| - 9.8e-60 202.4 0.0 1.1e-59 202.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|20089017|ref|NP_615092.1| - 2.9e-11 43.0 0.0 4.1e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|20089017|ref|NP_615092.1| - 7.5e-07 28.2 0.0 7.1e-06 25.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|20089017|ref|NP_615092.1| - 0.00061 18.5 0.0 0.00095 17.9 0.0 1.3 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|20089017|ref|NP_615092.1| - 0.0015 16.9 0.0 0.0033 15.7 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.16 gi|20089018|ref|NP_615093.1| - 1.1e-107 359.8 1.1 1.3e-107 359.6 0.8 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|20089018|ref|NP_615093.1| - 2.5e-06 26.7 0.0 4.1e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|20089018|ref|NP_615093.1| - 7.8e-05 21.1 0.0 0.0001 20.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|20089018|ref|NP_615093.1| - 0.0001 21.5 0.1 0.00031 19.9 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|20089018|ref|NP_615093.1| - 0.00063 18.8 0.2 0.0017 17.4 0.1 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|20089018|ref|NP_615093.1| - 0.0018 17.0 0.0 0.0034 16.1 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Bactofilin PF04519.8 gi|20089019|ref|NP_615094.1| - 2.1e-07 30.8 15.7 8.9e-06 25.6 1.5 3.6 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|20089019|ref|NP_615094.1| - 2.4e-06 26.8 20.7 0.00072 18.9 0.0 6.2 6 1 1 7 7 7 4 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|20089019|ref|NP_615094.1| - 0.017 14.8 0.9 0.064 12.8 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3494) PAAR_motif PF05488.8 gi|20089019|ref|NP_615094.1| - 0.096 12.6 0.1 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 PAAR motif TGT_C2 PF14810.1 gi|20089020|ref|NP_615095.1| - 3e-30 103.8 0.1 5.1e-30 103.1 0.1 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|20089020|ref|NP_615095.1| - 3.9e-13 48.9 0.1 7.3e-13 48.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain DUF1894 PF08979.6 gi|20089025|ref|NP_615100.1| - 1.3e-34 118.0 0.1 1.5e-34 117.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) NAD_binding_8 PF13450.1 gi|20089026|ref|NP_615101.1| - 2.8e-14 52.8 0.0 6.3e-14 51.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|20089026|ref|NP_615101.1| - 1.2e-10 40.8 0.0 5.1e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|20089026|ref|NP_615101.1| - 5.2e-10 38.9 0.0 1.5e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|20089026|ref|NP_615101.1| - 8.6e-09 34.3 0.0 1.1e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|20089026|ref|NP_615101.1| - 1.6e-07 30.5 0.0 8.7e-06 24.8 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|20089026|ref|NP_615101.1| - 3.6e-05 23.0 0.3 6.6e-05 22.1 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|20089026|ref|NP_615101.1| - 4e-05 23.9 4.6 0.00042 20.6 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|20089026|ref|NP_615101.1| - 9.5e-05 20.8 0.3 0.00015 20.2 0.2 1.3 1 0 0 1 1 1 1 GDP dissociation inhibitor Thi4 PF01946.12 gi|20089026|ref|NP_615101.1| - 0.00013 21.1 0.1 0.0025 16.9 0.0 2.3 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|20089026|ref|NP_615101.1| - 0.00015 20.9 0.0 0.0011 18.0 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|20089026|ref|NP_615101.1| - 0.00023 20.1 0.2 0.018 13.9 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|20089026|ref|NP_615101.1| - 0.0052 16.8 0.1 0.036 14.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|20089026|ref|NP_615101.1| - 0.029 14.2 0.1 0.079 12.8 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|20089026|ref|NP_615101.1| - 0.063 12.1 0.0 0.098 11.5 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein DUF1890 PF09001.6 gi|20089027|ref|NP_615102.1| - 3.2e-59 198.8 0.1 3.7e-59 198.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.6 gi|20089028|ref|NP_615103.1| - 2.4e-38 130.0 0.6 2.9e-38 129.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) AIRS_C PF02769.17 gi|20089029|ref|NP_615104.1| - 1.7e-18 67.0 0.0 3.2e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|20089029|ref|NP_615104.1| - 3.7e-15 55.9 0.3 7.2e-15 55.0 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.17 gi|20089029|ref|NP_615104.1| - 0.022 14.3 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AA_kinase PF00696.23 gi|20089030|ref|NP_615105.1| - 1.3e-52 178.7 0.9 2.1e-52 178.0 0.1 1.7 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|20089030|ref|NP_615105.1| - 1.9e-26 91.3 2.9 3e-12 45.8 0.5 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|20089030|ref|NP_615105.1| - 1.7e-25 88.0 0.3 6.5e-13 47.8 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|20089030|ref|NP_615105.1| - 1.5e-05 24.6 3.1 0.0013 18.4 0.1 3.7 3 0 0 3 3 3 1 ACT domain HAD_2 PF13419.1 gi|20089030|ref|NP_615105.1| - 0.0019 18.4 0.0 3.2 7.9 0.0 3.4 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase PPK2 PF03976.9 gi|20089030|ref|NP_615105.1| - 0.19 11.0 0.0 4.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) PhosphMutase PF10143.4 gi|20089031|ref|NP_615106.1| - 6.1e-56 188.7 0.0 9.3e-56 188.1 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|20089031|ref|NP_615106.1| - 2.7e-45 154.7 0.0 3.3e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|20089031|ref|NP_615106.1| - 0.06 12.0 0.1 0.25 9.9 0.0 1.8 2 0 0 2 2 2 0 Alkaline phosphatase HSP20 PF00011.16 gi|20089032|ref|NP_615107.1| - 2e-23 82.1 1.6 2.4e-23 81.8 1.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|20089032|ref|NP_615107.1| - 7.6e-06 26.3 0.1 7.3e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|20089032|ref|NP_615107.1| - 0.031 13.9 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 GvpH RecX PF02631.11 gi|20089033|ref|NP_615108.1| - 0.12 12.6 3.0 0.13 12.4 0.1 2.0 1 1 1 2 2 2 0 RecX family F420_ligase PF01996.11 gi|20089034|ref|NP_615109.1| - 5.1e-66 222.0 0.1 5.9e-66 221.7 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|20089035|ref|NP_615110.1| - 6.5e-29 99.5 1.8 1.1e-28 98.8 1.3 1.4 1 1 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|20089035|ref|NP_615110.1| - 0.00016 21.3 0.3 0.00037 20.1 0.4 1.5 2 0 0 2 2 2 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|20089035|ref|NP_615110.1| - 0.00032 20.5 0.4 0.00086 19.1 0.1 1.6 1 1 1 2 2 2 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|20089035|ref|NP_615110.1| - 0.0011 18.6 0.2 0.0015 18.2 0.1 1.4 1 1 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase MafB19-deam PF14437.1 gi|20089035|ref|NP_615110.1| - 0.0031 17.1 1.3 0.004 16.7 0.9 1.2 1 0 0 1 1 1 1 MafB19-like deaminase OTT_1508_deam PF14441.1 gi|20089035|ref|NP_615110.1| - 0.049 13.4 0.4 0.055 13.2 0.3 1.1 1 0 0 1 1 1 0 OTT_1508-like deaminase dCMP_cyt_deam_1 PF00383.17 gi|20089036|ref|NP_615111.1| - 6.5e-30 102.7 1.3 7.9e-30 102.5 0.9 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|20089036|ref|NP_615111.1| - 9e-05 22.1 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase APOBEC_N PF08210.6 gi|20089036|ref|NP_615111.1| - 9.5e-05 22.0 0.2 0.00038 20.1 0.3 1.7 2 0 0 2 2 2 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|20089036|ref|NP_615111.1| - 0.0015 18.4 0.7 0.003 17.4 0.2 1.6 1 1 1 2 2 2 1 Bd3614-like deaminase MafB19-deam PF14437.1 gi|20089036|ref|NP_615111.1| - 0.0086 15.7 0.7 0.012 15.2 0.5 1.2 1 0 0 1 1 1 1 MafB19-like deaminase zf-C3HC4 PF00097.20 gi|20089036|ref|NP_615111.1| - 0.052 13.2 3.5 0.11 12.1 1.9 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) ATP-grasp_3 PF02655.9 gi|20089036|ref|NP_615111.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain SecD_SecF PF02355.11 gi|20089037|ref|NP_615112.1| - 4.2e-38 130.4 14.9 6.5e-38 129.8 10.3 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|20089037|ref|NP_615112.1| - 3.6e-06 25.8 0.1 1.1e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.13 gi|20089037|ref|NP_615112.1| - 0.024 12.5 16.7 0.035 12.0 11.5 1.1 1 0 0 1 1 1 0 Patched family DUF1212 PF06738.7 gi|20089037|ref|NP_615112.1| - 6.6 6.1 20.6 0.76 9.2 6.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1212) SecD_SecF PF02355.11 gi|20089038|ref|NP_615113.1| - 1.1e-15 57.2 10.3 2.4e-15 56.2 7.1 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|20089038|ref|NP_615113.1| - 0.00017 20.6 0.1 0.00059 18.9 0.1 2.0 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|20089038|ref|NP_615113.1| - 0.7 8.5 18.4 1.3 7.7 12.8 1.4 1 0 0 1 1 1 0 MMPL family DNA_pol3_delta2 PF13177.1 gi|20089039|ref|NP_615114.1| - 6.4e-17 61.6 0.0 9.5e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|20089039|ref|NP_615114.1| - 7.4e-15 54.7 0.4 2.6e-14 52.9 0.1 2.1 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|20089039|ref|NP_615114.1| - 1e-11 45.1 0.0 3.1e-11 43.5 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|20089039|ref|NP_615114.1| - 7.9e-08 32.5 0.0 2.6e-07 30.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|20089039|ref|NP_615114.1| - 8.7e-06 25.6 0.1 3e-05 23.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|20089039|ref|NP_615114.1| - 0.00018 22.2 0.5 0.0014 19.3 0.0 2.1 1 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|20089039|ref|NP_615114.1| - 0.00038 20.2 0.1 0.001 18.8 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase RuvB_N PF05496.7 gi|20089039|ref|NP_615114.1| - 0.00085 18.4 0.1 0.23 10.4 0.0 2.9 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|20089039|ref|NP_615114.1| - 0.0019 16.9 0.0 0.0091 14.7 0.0 1.9 1 1 1 2 2 2 1 TIP49 C-terminus Rad17 PF03215.10 gi|20089039|ref|NP_615114.1| - 0.002 16.9 0.0 0.037 12.7 0.0 2.5 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|20089039|ref|NP_615114.1| - 0.0022 17.4 0.0 0.0086 15.4 0.0 2.1 2 2 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|20089039|ref|NP_615114.1| - 0.0062 16.0 0.0 0.017 14.6 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|20089039|ref|NP_615114.1| - 0.0078 16.2 0.3 0.27 11.2 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|20089039|ref|NP_615114.1| - 0.019 15.1 0.0 0.039 14.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|20089039|ref|NP_615114.1| - 0.022 14.8 0.0 0.08 12.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|20089039|ref|NP_615114.1| - 0.054 13.7 0.0 0.18 12.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF3400 PF11880.3 gi|20089039|ref|NP_615114.1| - 0.13 11.5 1.7 0.35 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) Cytochrom_C_asm PF01578.15 gi|20089040|ref|NP_615115.1| - 0.025 14.1 1.5 0.036 13.6 1.0 1.2 1 0 0 1 1 1 0 Cytochrome C assembly protein RDD PF06271.7 gi|20089040|ref|NP_615115.1| - 0.17 11.7 5.6 0.22 11.4 3.9 1.1 1 0 0 1 1 1 0 RDD family SUR7 PF06687.7 gi|20089040|ref|NP_615115.1| - 0.32 10.5 5.5 0.38 10.2 3.8 1.1 1 0 0 1 1 1 0 SUR7/PalI family Tic20 PF09685.5 gi|20089040|ref|NP_615115.1| - 0.48 10.4 5.1 0.59 10.1 3.6 1.1 1 0 0 1 1 1 0 Tic20-like protein ATP-synt_8 PF00895.15 gi|20089040|ref|NP_615115.1| - 1.3 9.2 5.9 1 9.6 0.4 2.1 2 0 0 2 2 2 0 ATP synthase protein 8 NfeD PF01957.13 gi|20089040|ref|NP_615115.1| - 2 8.5 6.1 2.5 8.2 4.2 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3671 PF12420.3 gi|20089040|ref|NP_615115.1| - 3.6 7.6 5.4 5 7.1 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF3317 PF11779.3 gi|20089040|ref|NP_615115.1| - 9.2 5.7 7.1 13 5.2 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3317) AA_permease PF00324.16 gi|20089041|ref|NP_615116.1| - 7.3e-40 136.7 45.9 9.5e-40 136.3 31.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|20089041|ref|NP_615116.1| - 9.5e-26 90.2 43.1 1.5e-25 89.6 29.7 1.4 1 1 1 2 2 2 1 Amino acid permease Herpes_LMP1 PF05297.6 gi|20089041|ref|NP_615116.1| - 0.0024 16.8 3.5 0.0024 16.8 2.4 2.6 3 0 0 3 3 3 1 Herpesvirus latent membrane protein 1 (LMP1) MtmB PF05369.7 gi|20089042|ref|NP_615117.1| - 0 1077.3 3.3 0 1077.1 2.3 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.12 gi|20089043|ref|NP_615118.1| - 1.2e-19 70.0 0.1 3.3e-19 68.6 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain B12-binding PF02310.14 gi|20089043|ref|NP_615118.1| - 2.1e-17 63.1 0.2 3.9e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain YbaB_DNA_bd PF02575.11 gi|20089043|ref|NP_615118.1| - 0.024 14.4 0.1 0.078 12.8 0.1 1.9 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family Rep_fac_C PF08542.6 gi|20089043|ref|NP_615118.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 Replication factor C C-terminal domain URO-D PF01208.12 gi|20089044|ref|NP_615119.1| - 8.9e-86 287.9 0.1 1e-85 287.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Flavodoxin_2 PF02525.12 gi|20089045|ref|NP_615120.1| - 1.8e-37 128.8 0.0 2.1e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|20089045|ref|NP_615120.1| - 1e-11 44.6 0.0 1.2e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|20089045|ref|NP_615120.1| - 0.0072 15.6 0.1 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Methyltransf_31 PF13847.1 gi|20089046|ref|NP_615121.1| - 1e-18 67.3 0.1 1.6e-18 66.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089046|ref|NP_615121.1| - 4.9e-15 55.6 0.0 7e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089046|ref|NP_615121.1| - 7e-15 55.3 0.0 1.2e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089046|ref|NP_615121.1| - 1.6e-14 54.1 0.1 3.7e-14 52.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089046|ref|NP_615121.1| - 1.9e-14 54.1 0.0 3.3e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089046|ref|NP_615121.1| - 6.2e-14 51.6 0.1 7.2e-14 51.4 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20089046|ref|NP_615121.1| - 2.1e-11 44.0 0.0 3.5e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20089046|ref|NP_615121.1| - 9.4e-10 38.2 0.1 1.3e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_PK PF05891.7 gi|20089046|ref|NP_615121.1| - 1.2e-09 37.7 0.1 1.6e-09 37.4 0.1 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase RrnaAD PF00398.15 gi|20089046|ref|NP_615121.1| - 8.8e-09 34.7 0.1 1.2e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|20089046|ref|NP_615121.1| - 3.1e-08 33.1 0.0 3.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|20089046|ref|NP_615121.1| - 4.1e-08 32.6 0.1 5.3e-08 32.2 0.1 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|20089046|ref|NP_615121.1| - 5.9e-07 29.5 0.0 9.3e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20089046|ref|NP_615121.1| - 1.1e-06 28.3 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20089046|ref|NP_615121.1| - 1.8e-05 24.0 0.0 2.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|20089046|ref|NP_615121.1| - 0.00017 20.6 0.1 0.00025 20.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|20089046|ref|NP_615121.1| - 0.0002 20.1 0.2 0.0003 19.6 0.2 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.7 gi|20089046|ref|NP_615121.1| - 0.00092 18.1 0.1 0.0014 17.6 0.1 1.5 1 1 0 1 1 1 1 DREV methyltransferase MethyltransfD12 PF02086.10 gi|20089046|ref|NP_615121.1| - 0.0013 18.3 0.8 0.0039 16.6 0.1 2.0 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase DUF43 PF01861.11 gi|20089046|ref|NP_615121.1| - 0.0096 14.9 0.1 0.014 14.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF43 TehB PF03848.9 gi|20089046|ref|NP_615121.1| - 0.013 14.7 0.5 0.027 13.6 0.3 1.5 1 1 1 2 2 2 0 Tellurite resistance protein TehB DOT1 PF08123.8 gi|20089046|ref|NP_615121.1| - 0.015 14.6 0.0 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_3 PF01596.12 gi|20089046|ref|NP_615121.1| - 0.015 14.3 0.7 0.032 13.2 0.1 1.7 1 1 1 2 2 2 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|20089046|ref|NP_615121.1| - 0.032 13.9 0.1 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.13 gi|20089046|ref|NP_615121.1| - 0.033 13.4 0.3 1.1 8.5 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF3419 PF11899.3 gi|20089046|ref|NP_615121.1| - 0.04 12.6 0.0 0.051 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Met_10 PF02475.11 gi|20089046|ref|NP_615121.1| - 0.056 13.0 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein UPF0020 PF01170.13 gi|20089046|ref|NP_615121.1| - 0.09 12.3 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MULE PF10551.4 gi|20089047|ref|NP_615122.1| - 6.6e-11 42.2 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20089047|ref|NP_615122.1| - 0.00059 19.1 2.3 0.0023 17.1 1.6 1.8 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20089047|ref|NP_615122.1| - 0.066 12.9 0.8 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20089047|ref|NP_615122.1| - 0.21 11.8 2.4 0.74 10.1 1.7 1.9 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.11 gi|20089047|ref|NP_615122.1| - 0.26 10.9 2.6 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|20089047|ref|NP_615122.1| - 0.28 10.5 2.8 1.3 8.4 0.4 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20089047|ref|NP_615122.1| - 0.3 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M3_N PF08439.5 gi|20089047|ref|NP_615122.1| - 2.2 8.4 6.7 0.31 11.1 1.0 2.4 3 0 0 3 3 3 0 Oligopeptidase F DUF4445 PF14574.1 gi|20089048|ref|NP_615123.1| - 1.8e-109 365.7 0.5 2.6e-109 365.1 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4 PF00037.22 gi|20089048|ref|NP_615123.1| - 2.3e-10 39.6 8.2 2e-06 27.1 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20089048|ref|NP_615123.1| - 3e-10 39.5 9.0 7.4e-06 25.6 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089048|ref|NP_615123.1| - 6.1e-09 36.1 10.9 1.1e-08 35.3 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089048|ref|NP_615123.1| - 3.3e-08 33.2 9.5 5.8e-08 32.4 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089048|ref|NP_615123.1| - 8e-08 31.9 8.6 1.6e-07 30.9 6.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089048|ref|NP_615123.1| - 5.4e-07 29.7 10.8 1e-06 28.9 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089048|ref|NP_615123.1| - 1.4e-06 27.8 11.8 0.0017 18.1 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089048|ref|NP_615123.1| - 1.5e-05 25.6 11.0 0.0015 19.2 8.2 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|20089048|ref|NP_615123.1| - 0.0002 21.6 3.7 0.0096 16.2 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089048|ref|NP_615123.1| - 0.00086 19.6 4.9 0.39 11.1 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089048|ref|NP_615123.1| - 0.001 19.0 10.5 0.003 17.5 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089048|ref|NP_615123.1| - 0.0018 18.4 15.3 0.027 14.8 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20089048|ref|NP_615123.1| - 0.0074 16.7 15.3 0.42 11.3 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089048|ref|NP_615123.1| - 6.2 7.4 12.2 1 10.0 1.7 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Polysacc_deac_1 PF01522.16 gi|20089049|ref|NP_615124.1| - 0.015 14.9 0.0 0.082 12.5 0.0 2.2 2 1 0 2 2 2 0 Polysaccharide deacetylase NAD_binding_2 PF03446.10 gi|20089050|ref|NP_615125.1| - 0.00025 20.9 0.0 0.00075 19.3 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|20089050|ref|NP_615125.1| - 0.08 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|20089050|ref|NP_615125.1| - 0.083 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.1 gi|20089051|ref|NP_615126.1| - 7.1e-12 45.4 0.0 4.1e-11 42.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|20089051|ref|NP_615126.1| - 4.2e-08 33.2 0.0 7.5e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20089051|ref|NP_615126.1| - 8.8e-08 31.2 0.0 7.9e-06 24.8 0.0 2.4 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|20089051|ref|NP_615126.1| - 0.0063 15.9 0.1 0.014 14.7 0.1 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.14 gi|20089051|ref|NP_615126.1| - 0.042 13.4 0.2 0.44 10.0 0.1 2.4 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Radical_SAM PF04055.16 gi|20089052|ref|NP_615127.1| - 3.6e-09 37.0 0.5 9.4e-09 35.6 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20089052|ref|NP_615127.1| - 5.2e-06 26.6 0.3 8.8e-06 25.8 0.2 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain BATS PF06968.8 gi|20089052|ref|NP_615127.1| - 0.00063 19.5 0.1 0.0062 16.3 0.1 2.3 1 1 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Fer4_14 PF13394.1 gi|20089052|ref|NP_615127.1| - 0.0021 18.0 0.2 0.0037 17.2 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Nif11 PF07862.6 gi|20089052|ref|NP_615127.1| - 0.16 11.9 0.8 0.8 9.6 0.2 2.4 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function tRNA-synt_2b PF00587.20 gi|161484944|ref|NP_615128.2| - 5.9e-14 52.0 0.0 9.8e-14 51.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|161484944|ref|NP_615128.2| - 1e-12 47.8 0.0 1.9e-09 37.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|161484944|ref|NP_615128.2| - 5.9e-12 45.0 0.3 3e-09 36.1 0.1 2.5 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_His PF13393.1 gi|161484944|ref|NP_615128.2| - 0.0049 15.9 0.0 0.0081 15.2 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase Prenyltrans_2 PF13249.1 gi|20089054|ref|NP_615129.1| - 7.1e-10 39.2 5.8 0.002 18.5 0.8 4.1 3 1 0 3 3 3 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|20089054|ref|NP_615129.1| - 1.5e-06 28.2 2.8 0.0087 16.0 0.2 3.4 2 1 1 3 3 3 2 Prenyltransferase-like Prenyltrans PF00432.16 gi|20089054|ref|NP_615129.1| - 0.0089 15.5 8.4 0.71 9.4 0.0 4.3 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|20089054|ref|NP_615129.1| - 0.088 12.0 0.3 3.2 6.9 0.0 3.0 2 1 2 4 4 4 0 A-macroglobulin complement component DUF134 PF02001.11 gi|20089055|ref|NP_615130.1| - 1.3e-18 66.8 0.1 2.2e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|20089055|ref|NP_615130.1| - 3.1e-05 23.3 0.2 4.9e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|20089055|ref|NP_615130.1| - 0.00017 20.8 0.2 0.00028 20.1 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|20089055|ref|NP_615130.1| - 0.052 13.3 0.1 0.076 12.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|20089055|ref|NP_615130.1| - 0.063 12.9 0.1 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|20089055|ref|NP_615130.1| - 0.071 13.1 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|20089055|ref|NP_615130.1| - 0.089 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix zf-C4_Topoisom PF01396.14 gi|20089055|ref|NP_615130.1| - 0.16 11.4 0.5 0.16 11.4 0.3 2.6 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|20089055|ref|NP_615130.1| - 0.2 11.1 5.1 4.8 6.7 0.5 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|20089055|ref|NP_615130.1| - 0.65 9.2 8.7 1.6 8.0 6.0 1.6 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20089055|ref|NP_615130.1| - 3.1 7.5 6.1 5.4 6.7 4.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|20089055|ref|NP_615130.1| - 3.3 7.5 8.7 12 5.8 1.2 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|20089055|ref|NP_615130.1| - 5.7 6.9 9.3 37 4.3 6.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|20089057|ref|NP_615132.1| - 0.0056 16.1 5.5 0.16 11.5 0.3 2.3 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|20089057|ref|NP_615132.1| - 0.0095 15.1 7.9 0.016 14.4 5.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|20089057|ref|NP_615132.1| - 0.024 14.3 0.9 0.024 14.3 0.6 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|20089057|ref|NP_615132.1| - 0.028 13.9 6.8 1.9 8.0 4.7 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|20089057|ref|NP_615132.1| - 0.033 13.8 2.9 2.7 7.7 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal ADK_lid PF05191.9 gi|20089057|ref|NP_615132.1| - 0.059 13.0 5.9 0.12 12.0 4.1 1.6 1 1 0 1 1 1 0 Adenylate kinase, active site lid DZR PF12773.2 gi|20089057|ref|NP_615132.1| - 0.23 11.3 7.7 0.49 10.2 5.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-B_box PF00643.19 gi|20089057|ref|NP_615132.1| - 0.32 10.9 3.7 3.4 7.6 0.3 2.2 2 0 0 2 2 2 0 B-box zinc finger Ogr_Delta PF04606.7 gi|20089057|ref|NP_615132.1| - 0.58 9.8 3.8 7.5 6.2 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger A2L_zn_ribbon PF08792.5 gi|20089057|ref|NP_615132.1| - 0.73 9.3 5.7 6.2 6.4 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|20089057|ref|NP_615132.1| - 0.74 9.5 11.0 0.51 10.0 1.6 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|20089057|ref|NP_615132.1| - 0.98 9.4 8.5 2.3 8.2 4.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|20089057|ref|NP_615132.1| - 2 8.1 4.5 2.5 7.8 3.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|20089057|ref|NP_615132.1| - 2.4 7.8 6.2 2.8 7.6 3.1 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|20089057|ref|NP_615132.1| - 3 7.2 10.2 1.3 8.4 1.9 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|20089057|ref|NP_615132.1| - 3.5 7.9 8.7 3.3 8.0 0.1 2.7 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|20089057|ref|NP_615132.1| - 5.5 6.8 11.3 0.98 9.2 1.4 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2 PF00096.21 gi|20089057|ref|NP_615132.1| - 6.3 7.3 5.4 38 4.8 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Radical_SAM PF04055.16 gi|20089058|ref|NP_615133.1| - 2.3e-11 44.1 0.0 7.5e-11 42.4 0.0 1.8 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20089058|ref|NP_615133.1| - 0.0055 16.7 0.1 0.02 14.9 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain TrmB PF01978.14 gi|20089058|ref|NP_615133.1| - 0.023 14.4 0.0 0.072 12.8 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB FliG_N PF14842.1 gi|20089058|ref|NP_615133.1| - 0.092 12.8 0.3 7.6 6.6 0.0 2.7 1 1 1 2 2 2 0 FliG N-terminal domain Ferritin PF00210.19 gi|20089059|ref|NP_615134.1| - 6.1e-40 136.2 1.9 7.2e-40 136.0 1.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain IF2_N PF04760.10 gi|20089059|ref|NP_615134.1| - 0.05 13.2 0.4 0.12 12.0 0.3 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region PolyA_pol_arg_C PF12626.2 gi|20089059|ref|NP_615134.1| - 0.088 12.4 0.1 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 Polymerase A arginine-rich C-terminus Usp PF00582.21 gi|20089060|ref|NP_615135.1| - 3e-38 131.1 0.4 3.4e-38 130.9 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|20089060|ref|NP_615135.1| - 0.08 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase AP_endonuc_2 PF01261.19 gi|20089060|ref|NP_615135.1| - 0.093 12.0 0.2 0.22 10.7 0.1 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel CARDB PF07705.6 gi|20089061|ref|NP_615136.1| - 0.055 13.5 0.8 2.6 8.1 0.0 2.7 2 1 0 2 2 2 0 CARDB TfuA PF07812.7 gi|20089062|ref|NP_615137.1| - 1.2e-46 157.0 0.0 2.8e-46 155.8 0.0 1.6 2 0 0 2 2 2 1 TfuA-like protein YcaO PF02624.11 gi|20089063|ref|NP_615138.1| - 2.5e-85 286.9 0.0 3.4e-85 286.4 0.0 1.2 1 0 0 1 1 1 1 YcaO-like family E1-E2_ATPase PF00122.15 gi|20089064|ref|NP_615139.1| - 1.1e-51 175.0 2.2 2e-51 174.2 1.5 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|20089064|ref|NP_615139.1| - 1.1e-44 153.4 0.6 3.8e-44 151.6 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20089064|ref|NP_615139.1| - 8e-16 58.7 0.0 1.6e-15 57.7 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20089064|ref|NP_615139.1| - 7.4e-07 29.0 0.2 0.002 17.7 0.2 2.9 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cytochrom_C PF00034.16 gi|20089065|ref|NP_615140.1| - 2.9e-07 31.2 0.0 5.7e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|20089065|ref|NP_615140.1| - 6.6e-06 26.1 0.0 1.4e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III DUF3185 PF11381.3 gi|20089065|ref|NP_615140.1| - 0.027 14.2 0.7 0.053 13.2 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) PLDc_N PF13396.1 gi|20089066|ref|NP_615141.1| - 6.1e-13 48.2 1.7 6.1e-13 48.2 1.2 1.9 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal HlyIII PF03006.15 gi|20089066|ref|NP_615141.1| - 0.0094 15.3 0.3 0.012 15.0 0.2 1.2 1 0 0 1 1 1 1 Haemolysin-III related DUF4131 PF13567.1 gi|20089066|ref|NP_615141.1| - 0.012 15.0 0.5 0.015 14.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4282 PF14110.1 gi|20089066|ref|NP_615141.1| - 0.031 14.4 2.5 0.041 14.0 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) FA_desaturase PF00487.19 gi|20089066|ref|NP_615141.1| - 0.049 13.0 0.5 0.055 12.8 0.4 1.0 1 0 0 1 1 1 0 Fatty acid desaturase SecE PF00584.15 gi|20089066|ref|NP_615141.1| - 0.066 12.8 2.0 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Tetraspannin PF00335.15 gi|20089066|ref|NP_615141.1| - 0.072 12.3 0.6 0.088 12.0 0.4 1.1 1 0 0 1 1 1 0 Tetraspanin family ABC2_membrane_5 PF13346.1 gi|20089066|ref|NP_615141.1| - 0.089 12.0 4.0 0.11 11.7 2.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein OST3_OST6 PF04756.8 gi|20089066|ref|NP_615141.1| - 0.11 12.0 1.9 0.21 11.1 1.3 1.5 1 1 0 1 1 1 0 OST3 / OST6 family DUF2207 PF09972.4 gi|20089066|ref|NP_615141.1| - 0.12 10.9 0.6 0.13 10.7 0.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1625 PF07787.7 gi|20089066|ref|NP_615141.1| - 0.18 11.0 1.1 0.17 11.1 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) DUF3784 PF12650.2 gi|20089066|ref|NP_615141.1| - 0.38 10.7 5.4 0.55 10.2 3.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) DUF3753 PF12575.3 gi|20089066|ref|NP_615141.1| - 0.77 9.5 5.5 3.7 7.4 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) Vpu PF00558.14 gi|20089066|ref|NP_615141.1| - 1.6 8.3 4.3 1.7 8.2 1.6 1.8 1 1 1 2 2 2 0 Vpu protein CcmH PF03918.9 gi|20089066|ref|NP_615141.1| - 6.7 5.6 5.8 2.5 7.0 0.1 2.0 1 1 1 2 2 2 0 Cytochrome C biogenesis protein MFS_1 PF07690.11 gi|20089067|ref|NP_615142.1| - 2.6e-45 154.6 36.2 2.6e-45 154.6 25.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|20089067|ref|NP_615142.1| - 4.5e-05 22.0 23.6 0.015 13.7 5.2 2.8 1 1 2 3 3 3 2 MFS/sugar transport protein NapE PF06796.6 gi|20089067|ref|NP_615142.1| - 3.6 6.9 7.8 0.43 9.9 0.7 2.8 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE LCM PF04072.9 gi|20089068|ref|NP_615143.1| - 1.2e-38 132.5 0.0 1.5e-38 132.1 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase tRNA-synt_2d PF01409.15 gi|20089069|ref|NP_615144.1| - 3e-90 301.7 0.0 3.9e-90 301.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|20089069|ref|NP_615144.1| - 0.00017 20.5 0.5 0.066 11.9 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|20089069|ref|NP_615144.1| - 0.0069 15.9 0.1 0.038 13.5 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HTH_45 PF14947.1 gi|20089069|ref|NP_615144.1| - 0.15 11.9 0.2 1 9.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix ssDNA-exonuc_C PF10141.4 gi|20089069|ref|NP_615144.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Single-strand DNA-specific exonuclease, C terminal domain tRNA-synt_1b PF00579.20 gi|20089070|ref|NP_615145.1| - 3.5e-35 121.5 0.0 2.3e-18 66.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) NTP_transf_2 PF01909.18 gi|20089071|ref|NP_615146.1| - 0.026 14.8 0.7 0.039 14.2 0.5 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase domain DUF86 PF01934.12 gi|20089072|ref|NP_615147.1| - 5.2e-24 84.1 0.0 5.7e-24 84.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Erp_C PF06780.6 gi|20089072|ref|NP_615147.1| - 0.13 12.1 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 Erp protein C-terminus Radical_SAM PF04055.16 gi|20089073|ref|NP_615148.1| - 8e-11 42.3 0.1 2.5e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|20089073|ref|NP_615148.1| - 1.4e-06 28.5 0.0 2.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain NAD_binding_2 PF03446.10 gi|20089073|ref|NP_615148.1| - 0.0046 16.8 0.0 0.0077 16.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Amidohydro_4 PF13147.1 gi|20089073|ref|NP_615148.1| - 0.093 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase Penicillinase_R PF03965.11 gi|20089073|ref|NP_615148.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.17 gi|20089074|ref|NP_615149.1| - 1.3e-11 43.9 0.1 3.1e-11 42.7 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|20089074|ref|NP_615149.1| - 0.00019 21.0 0.0 0.00038 20.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Sulfolobus_pRN PF05584.6 gi|20089074|ref|NP_615149.1| - 0.0012 18.7 1.1 0.0036 17.2 0.4 2.0 1 1 1 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_24 PF13412.1 gi|20089074|ref|NP_615149.1| - 0.056 12.8 0.2 1.5 8.2 0.0 2.8 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding TetR_N PF00440.18 gi|20089076|ref|NP_615151.1| - 3.5e-15 55.3 0.1 6.2e-15 54.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family B12-binding_2 PF02607.12 gi|20089076|ref|NP_615151.1| - 0.042 13.8 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 B12 binding domain XLF PF09302.6 gi|20089076|ref|NP_615151.1| - 0.068 12.9 1.3 0.66 9.7 0.2 2.1 1 1 1 2 2 2 0 XLF (XRCC4-like factor) TBP PF00352.16 gi|20089077|ref|NP_615152.1| - 1.4e-58 194.1 0.1 1.2e-28 98.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|20089077|ref|NP_615152.1| - 0.00096 19.1 0.0 0.53 10.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|20089077|ref|NP_615152.1| - 0.11 11.8 0.1 8.8 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3252) MarR PF01047.17 gi|20089078|ref|NP_615153.1| - 3.1e-13 49.2 0.0 5.9e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|20089078|ref|NP_615153.1| - 2.2e-10 40.0 0.0 3e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20089078|ref|NP_615153.1| - 8.4e-09 35.6 0.0 1.4e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|20089078|ref|NP_615153.1| - 1.5e-05 24.7 0.0 2.6e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.1 gi|20089078|ref|NP_615153.1| - 5.5e-05 22.4 0.0 0.00011 21.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20089078|ref|NP_615153.1| - 0.0011 18.5 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|20089078|ref|NP_615153.1| - 0.0015 18.8 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal Fe_dep_repress PF01325.14 gi|20089078|ref|NP_615153.1| - 0.0024 17.7 0.0 0.0043 16.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|20089078|ref|NP_615153.1| - 0.0025 17.8 0.0 0.0045 16.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain RNA_pol_Rpc34 PF05158.7 gi|20089078|ref|NP_615153.1| - 0.0054 15.9 0.1 0.0063 15.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.1 gi|20089078|ref|NP_615153.1| - 0.0089 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|20089078|ref|NP_615153.1| - 0.048 13.1 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|20089078|ref|NP_615153.1| - 0.05 13.1 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.1 gi|20089078|ref|NP_615153.1| - 0.13 12.3 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Tower PF09121.5 gi|20089078|ref|NP_615153.1| - 0.14 12.1 1.0 0.2 11.5 0.3 1.6 2 0 0 2 2 1 0 Tower HTH_IclR PF09339.5 gi|20089078|ref|NP_615153.1| - 0.14 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain MFS_1 PF07690.11 gi|20089079|ref|NP_615154.1| - 8.5e-58 195.7 37.4 4.2e-51 173.7 20.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|20089079|ref|NP_615154.1| - 9.2e-16 57.0 15.5 1.2e-15 56.6 10.8 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|20089079|ref|NP_615154.1| - 2.7e-09 35.9 30.4 7.8e-05 21.2 3.1 2.9 1 1 2 3 3 3 3 MFS/sugar transport protein OATP PF03137.15 gi|20089079|ref|NP_615154.1| - 1.2 7.0 22.1 0.014 13.4 0.6 3.7 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family eIF-5_eIF-2B PF01873.12 gi|20089080|ref|NP_615155.1| - 1.5e-39 134.5 0.0 2.1e-39 134.0 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|20089080|ref|NP_615155.1| - 2.3e-12 46.4 1.1 6.8e-12 44.9 0.8 1.8 1 0 0 1 1 1 1 TRAM domain DUF4265 PF14085.1 gi|20089080|ref|NP_615155.1| - 0.0022 17.7 0.0 0.0064 16.2 0.0 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4265) Zn-ribbon_8 PF09723.5 gi|20089080|ref|NP_615155.1| - 0.0082 16.0 0.6 0.018 14.9 0.4 1.6 1 0 0 1 1 1 1 Zinc ribbon domain ZF-HD_dimer PF04770.7 gi|20089080|ref|NP_615155.1| - 0.033 14.2 0.2 0.058 13.4 0.1 1.5 1 0 0 1 1 1 0 ZF-HD protein dimerisation region NMD3 PF04981.8 gi|20089080|ref|NP_615155.1| - 0.033 13.3 0.2 0.047 12.8 0.1 1.2 1 0 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.1 gi|20089080|ref|NP_615155.1| - 0.076 12.2 0.3 8.3 5.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|20089080|ref|NP_615155.1| - 0.1 12.0 0.8 8.3 6.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|20089080|ref|NP_615155.1| - 0.35 9.9 0.1 0.35 9.9 0.1 1.7 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.13 gi|20089081|ref|NP_615156.1| - 3e-33 114.4 0.8 3.5e-33 114.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1786 PF08735.5 gi|20089082|ref|NP_615157.1| - 3e-98 328.0 0.0 3.7e-98 327.7 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) DDR PF08841.5 gi|20089082|ref|NP_615157.1| - 0.029 13.2 0.8 0.084 11.6 0.1 2.0 2 1 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain MFS_1 PF07690.11 gi|20089083|ref|NP_615158.1| - 7.3e-41 140.0 51.7 7.3e-41 140.0 35.9 3.0 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|20089083|ref|NP_615158.1| - 4.5e-09 34.9 13.6 2.4e-06 25.9 2.0 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.19 gi|20089083|ref|NP_615158.1| - 4.9e-06 25.3 11.2 4.9e-06 25.3 7.8 2.9 4 0 0 4 4 4 2 Sugar (and other) transporter Cas_Cas02710 PF09670.5 gi|20089084|ref|NP_615159.1| - 5.5e-05 21.9 0.1 7.8e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|20089084|ref|NP_615159.1| - 0.0027 17.4 0.0 0.0062 16.2 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF604 PF04646.7 gi|20089084|ref|NP_615159.1| - 0.02 14.1 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF604 DUF4364 PF14277.1 gi|20089084|ref|NP_615159.1| - 0.022 14.3 0.2 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) MoCF_biosynth PF00994.19 gi|20089085|ref|NP_615160.1| - 3.6e-33 113.9 0.0 4.2e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain TPR_10 PF13374.1 gi|20089086|ref|NP_615161.1| - 9e-113 365.4 7.9 5.8e-14 51.4 0.0 10.4 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20089086|ref|NP_615161.1| - 6.4e-110 359.2 15.7 7e-25 86.7 0.1 5.9 4 1 0 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20089086|ref|NP_615161.1| - 7e-55 178.5 19.8 1e-05 24.9 0.0 9.9 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20089086|ref|NP_615161.1| - 6.7e-51 169.8 36.5 1.9e-10 40.2 0.7 6.5 3 2 4 7 7 7 7 TPR repeat TPR_1 PF00515.23 gi|20089086|ref|NP_615161.1| - 1.6e-50 166.7 32.4 2.4e-07 30.0 0.0 9.7 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20089086|ref|NP_615161.1| - 5.7e-38 125.7 28.1 0.00021 20.9 0.2 9.9 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20089086|ref|NP_615161.1| - 1.6e-28 96.2 34.2 3.4e-05 23.3 0.2 10.1 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20089086|ref|NP_615161.1| - 8.9e-26 88.0 16.7 0.023 15.3 0.1 10.4 4 3 6 10 10 10 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20089086|ref|NP_615161.1| - 3.1e-22 78.6 15.1 2.8e-05 24.6 0.0 7.8 2 1 7 9 9 9 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20089086|ref|NP_615161.1| - 8.5e-20 69.2 12.1 0.035 14.3 0.0 10.2 9 0 0 9 9 9 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|20089086|ref|NP_615161.1| - 7.7e-18 64.4 14.6 0.00086 19.4 0.1 7.0 3 1 7 10 10 9 8 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|20089086|ref|NP_615161.1| - 9.6e-15 54.6 18.4 0.0029 17.9 0.2 7.5 2 2 5 8 8 8 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20089086|ref|NP_615161.1| - 5.7e-14 51.5 24.2 0.14 12.6 0.3 9.6 9 0 0 9 9 9 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20089086|ref|NP_615161.1| - 1.6e-13 50.2 2.5 0.0039 17.0 0.0 6.0 2 2 5 7 7 7 4 Tetratricopeptide repeat RPN7 PF10602.4 gi|20089086|ref|NP_615161.1| - 8.6e-12 44.7 14.5 0.11 11.8 0.0 9.0 4 2 6 10 10 9 3 26S proteasome subunit RPN7 DUF2225 PF09986.4 gi|20089086|ref|NP_615161.1| - 1.7e-10 40.7 9.5 0.017 14.6 0.5 6.5 2 1 3 5 5 5 3 Uncharacterized protein conserved in bacteria (DUF2225) Neuralized PF07177.7 gi|20089086|ref|NP_615161.1| - 1.1e-08 34.8 0.0 8.6 6.3 0.0 6.9 7 0 0 7 7 7 0 Neuralized MIT PF04212.13 gi|20089086|ref|NP_615161.1| - 1.4e-08 34.4 25.3 0.17 11.7 0.3 8.9 7 2 1 8 8 7 1 MIT (microtubule interacting and transport) domain Tcf25 PF04910.9 gi|20089086|ref|NP_615161.1| - 4.2e-08 32.5 7.9 0.52 9.1 0.0 7.3 2 1 4 8 8 8 2 Transcriptional repressor TCF25 SHNi-TPR PF10516.4 gi|20089086|ref|NP_615161.1| - 7.8e-08 31.4 7.0 0.073 12.3 0.0 7.4 8 0 0 8 8 7 2 SHNi-TPR Rapsyn_N PF10579.4 gi|20089086|ref|NP_615161.1| - 2.7e-07 30.3 1.0 14 5.5 0.0 6.3 3 1 3 6 6 6 0 Rapsyn N-terminal myristoylation and linker region AAA_16 PF13191.1 gi|20089086|ref|NP_615161.1| - 5.7e-07 29.6 0.0 4e-06 26.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Fis1_TPR_C PF14853.1 gi|20089086|ref|NP_615161.1| - 6.8e-07 29.0 24.4 0.085 12.7 0.1 8.0 8 0 0 8 8 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.2 gi|20089086|ref|NP_615161.1| - 1.1e-06 28.6 4.6 0.62 10.1 0.1 6.1 5 2 1 6 6 5 1 Tetratrico peptide repeat TPR_4 PF07721.9 gi|20089086|ref|NP_615161.1| - 3.2e-05 23.9 0.1 6.2 7.5 0.0 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat PPR PF01535.15 gi|20089086|ref|NP_615161.1| - 3.5e-05 23.4 2.9 23 5.2 0.0 7.1 6 0 0 6 6 6 0 PPR repeat DUF627 PF04781.7 gi|20089086|ref|NP_615161.1| - 8.3e-05 22.1 4.2 3.3 7.3 0.0 6.0 3 2 2 6 6 6 1 Protein of unknown function (DUF627) DUF4404 PF14357.1 gi|20089086|ref|NP_615161.1| - 0.00022 21.5 0.1 32 5.0 0.0 5.8 5 0 0 5 5 5 0 Domain of unknown function (DUF4404) Cut8_M PF14483.1 gi|20089086|ref|NP_615161.1| - 0.0012 18.5 0.3 57 3.6 0.0 5.3 5 0 0 5 5 5 0 Cut8 dimerisation domain AAA_22 PF13401.1 gi|20089086|ref|NP_615161.1| - 0.0017 18.4 0.0 0.025 14.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|20089086|ref|NP_615161.1| - 0.0019 17.9 2.4 0.015 15.0 0.0 3.3 3 1 0 3 3 3 1 Archaeal ATPase Rab5-bind PF09311.6 gi|20089086|ref|NP_615161.1| - 0.0028 17.5 0.0 1.1 9.0 0.0 3.9 3 1 1 4 4 4 1 Rabaptin-like protein NACHT PF05729.7 gi|20089086|ref|NP_615161.1| - 0.0045 16.6 0.0 1.3 8.6 0.0 2.5 2 0 0 2 2 2 1 NACHT domain DUF1493 PF07377.7 gi|20089086|ref|NP_615161.1| - 0.0098 15.9 4.2 0.045 13.8 0.0 3.7 4 0 0 4 4 4 1 Protein of unknown function (DUF1493) AAA_17 PF13207.1 gi|20089086|ref|NP_615161.1| - 0.01 16.6 4.3 0.18 12.6 0.8 3.4 2 2 0 2 2 2 0 AAA domain PHR PF08005.7 gi|20089086|ref|NP_615161.1| - 0.02 15.0 0.1 1 9.5 0.0 3.1 3 0 0 3 3 3 0 PHR domain FATC PF02260.15 gi|20089086|ref|NP_615161.1| - 9.4 5.7 7.5 19 4.7 0.0 3.9 5 0 0 5 5 4 0 FATC domain SNF2_N PF00176.18 gi|20089087|ref|NP_615162.1| - 2.3e-64 217.0 0.0 3.1e-64 216.6 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.3 gi|20089087|ref|NP_615162.1| - 7.6e-42 142.0 0.6 2.5e-41 140.4 0.4 2.0 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.26 gi|20089087|ref|NP_615162.1| - 6e-16 58.0 0.0 1.8e-15 56.5 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|20089087|ref|NP_615162.1| - 9.9e-06 25.1 0.1 7.3e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase SWIM PF04434.12 gi|20089088|ref|NP_615163.1| - 3.5e-07 29.5 0.1 6.4e-07 28.7 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF1724 PF08350.5 gi|20089089|ref|NP_615164.1| - 7.5e-26 89.4 0.0 2e-25 88.1 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|20089089|ref|NP_615164.1| - 8.3e-05 22.2 0.1 0.00016 21.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|20089089|ref|NP_615164.1| - 0.00027 20.5 0.1 0.0005 19.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20089089|ref|NP_615164.1| - 0.0029 17.3 0.1 0.0057 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|20089089|ref|NP_615164.1| - 0.017 14.7 0.1 0.036 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain CRS1_YhbY PF01985.16 gi|20089090|ref|NP_615165.1| - 9.7e-26 89.5 1.6 1.1e-25 89.4 1.1 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain CCDC155 PF14662.1 gi|20089090|ref|NP_615165.1| - 0.047 13.2 0.2 0.05 13.2 0.1 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 DUF1571 PF07608.6 gi|20089090|ref|NP_615165.1| - 0.087 11.9 0.1 0.089 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) tRNA-synt_2c PF01411.14 gi|20089092|ref|NP_615167.1| - 3.4e-129 431.6 0.0 4.4e-129 431.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|20089092|ref|NP_615167.1| - 3.7e-13 49.1 1.5 1.2e-12 47.5 1.0 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|20089092|ref|NP_615167.1| - 1.3e-08 34.4 1.2 4e-08 32.8 0.8 1.9 1 0 0 1 1 1 1 DHHA1 domain Methyltransf_15 PF09445.5 gi|20089093|ref|NP_615168.1| - 8e-13 48.2 0.0 1.5e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|20089093|ref|NP_615168.1| - 7.3e-11 41.8 0.0 1.4e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20089093|ref|NP_615168.1| - 2.6e-09 37.1 0.0 3.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089093|ref|NP_615168.1| - 1.1e-08 35.6 0.0 2.2e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|20089093|ref|NP_615168.1| - 1.4e-06 27.5 0.0 2.1e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|20089093|ref|NP_615168.1| - 1.2e-05 25.6 0.0 2.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089093|ref|NP_615168.1| - 5e-05 23.5 0.0 8.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089093|ref|NP_615168.1| - 0.00011 21.5 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|20089093|ref|NP_615168.1| - 0.00031 20.3 0.0 0.0005 19.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein tRNA_U5-meth_tr PF05958.6 gi|20089093|ref|NP_615168.1| - 0.00041 19.1 0.0 0.00062 18.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|20089093|ref|NP_615168.1| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|20089093|ref|NP_615168.1| - 0.0076 15.3 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|20089093|ref|NP_615168.1| - 0.023 14.0 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 FtsJ PF01728.14 gi|20089093|ref|NP_615168.1| - 0.057 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 FtsJ-like methyltransferase DNA_methylase PF00145.12 gi|20089093|ref|NP_615168.1| - 0.06 12.4 0.0 0.091 11.8 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase PCMT PF01135.14 gi|20089093|ref|NP_615168.1| - 0.081 12.4 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Acetyltransf_1 PF00583.19 gi|20089096|ref|NP_615171.1| - 8.6e-11 41.7 0.1 1.5e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20089096|ref|NP_615171.1| - 1.2e-08 35.0 0.0 1.7e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089096|ref|NP_615171.1| - 2.6e-07 30.5 0.0 3.4e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089096|ref|NP_615171.1| - 7.9e-07 29.2 0.0 9.4e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20089096|ref|NP_615171.1| - 0.0033 17.5 0.0 0.0045 17.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20089096|ref|NP_615171.1| - 0.0085 15.9 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|20089096|ref|NP_615171.1| - 0.028 14.0 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|20089096|ref|NP_615171.1| - 0.047 13.4 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase FR47 PF08445.5 gi|20089096|ref|NP_615171.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 1 0 1 1 1 0 FR47-like protein DUF4367 PF14285.1 gi|20089097|ref|NP_615172.1| - 3.3e-13 49.2 3.1 3.3e-13 49.2 2.2 2.8 1 1 0 2 2 2 1 Domain of unknown function (DUF4367) LolA PF03548.10 gi|20089097|ref|NP_615172.1| - 1.7e-08 34.2 1.2 3.4e-08 33.2 0.9 1.4 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA MucB_RseB PF03888.9 gi|20089097|ref|NP_615172.1| - 0.00029 19.9 0.0 0.00043 19.3 0.0 1.2 1 0 0 1 1 1 1 MucB/RseB family DUF2092 PF09865.4 gi|20089097|ref|NP_615172.1| - 0.014 14.4 0.1 1.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2092) Terminase_5 PF06056.7 gi|20089097|ref|NP_615172.1| - 0.085 12.4 0.2 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) DUF190 PF02641.10 gi|20089098|ref|NP_615173.1| - 1.9e-27 95.0 0.2 2.1e-27 94.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 DUF3103 PF11301.3 gi|20089098|ref|NP_615173.1| - 0.0017 17.1 0.0 0.0021 16.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3103) TBSV_P22 PF03558.8 gi|20089098|ref|NP_615173.1| - 0.056 12.8 0.0 0.06 12.7 0.0 1.1 1 0 0 1 1 1 0 TBSV core protein P21/P22 Iso_dh PF00180.15 gi|20089099|ref|NP_615174.1| - 1.4e-94 316.9 0.0 1.6e-94 316.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|20089100|ref|NP_615175.1| - 1.8e-19 70.1 0.0 2.9e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|20089100|ref|NP_615175.1| - 0.012 15.0 0.1 0.24 10.7 0.1 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus MEDS PF14417.1 gi|20089101|ref|NP_615176.1| - 1.5e-85 285.0 0.1 8e-85 282.7 0.0 2.3 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20089101|ref|NP_615176.1| - 1.5e-74 246.9 0.1 4.5e-18 65.5 0.0 6.6 6 0 0 6 6 6 5 PAS domain PAS_4 PF08448.5 gi|20089101|ref|NP_615176.1| - 5.7e-65 216.2 0.0 1e-13 51.3 0.0 5.7 6 0 0 6 6 6 5 PAS fold PAS PF00989.19 gi|20089101|ref|NP_615176.1| - 1e-54 183.1 0.0 1.5e-17 63.4 0.0 5.9 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|20089101|ref|NP_615176.1| - 8.6e-40 134.7 0.0 5.5e-19 68.0 0.0 6.1 5 0 0 5 5 5 5 PAS fold HisKA_2 PF07568.7 gi|20089101|ref|NP_615176.1| - 1.3e-32 111.4 0.7 5.6e-32 109.4 0.5 2.2 1 0 0 1 1 1 1 Histidine kinase PAS_8 PF13188.1 gi|20089101|ref|NP_615176.1| - 4.2e-29 99.3 0.0 1e-07 31.5 0.0 5.5 5 0 0 5 5 5 4 PAS domain GAF_2 PF13185.1 gi|20089101|ref|NP_615176.1| - 1.8e-17 64.1 0.0 3.5e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|20089101|ref|NP_615176.1| - 2.2e-16 60.0 0.0 2.3e-06 27.8 0.0 5.3 5 0 0 5 5 5 4 PAS domain HATPase_c PF02518.21 gi|20089101|ref|NP_615176.1| - 1e-11 44.5 0.1 3e-11 43.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|20089101|ref|NP_615176.1| - 4.9e-06 26.5 5.5 5.2 7.1 0.0 6.9 6 1 0 6 6 6 1 PAS fold HATPase_c_2 PF13581.1 gi|20089101|ref|NP_615176.1| - 0.00046 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|20089101|ref|NP_615176.1| - 0.0034 17.5 0.0 0.0091 16.1 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|20089101|ref|NP_615176.1| - 0.017 15.2 0.0 0.051 13.6 0.0 1.8 1 0 0 1 1 1 0 GAF domain HWE_HK PF07536.9 gi|20089101|ref|NP_615176.1| - 0.017 15.5 3.8 0.024 15.0 0.1 2.9 3 0 0 3 3 2 0 HWE histidine kinase AAA_10 PF12846.2 gi|20089102|ref|NP_615177.1| - 3.2e-13 49.7 0.0 7.2e-11 42.0 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|20089102|ref|NP_615177.1| - 3.4e-09 36.8 0.0 6.3e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|20089102|ref|NP_615177.1| - 2.4e-07 30.4 0.0 0.012 15.0 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family Zot PF05707.7 gi|20089102|ref|NP_615177.1| - 0.0093 15.4 0.0 0.021 14.3 0.0 1.6 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|20089102|ref|NP_615177.1| - 0.017 13.5 0.0 0.037 12.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Imm15 PF15590.1 gi|20089102|ref|NP_615177.1| - 0.026 13.6 0.0 0.058 12.4 0.0 1.5 1 0 0 1 1 1 0 Immunity protein 15 AAA PF00004.24 gi|20089102|ref|NP_615177.1| - 0.087 13.0 0.0 2.2 8.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1724 PF08350.5 gi|20089103|ref|NP_615178.1| - 9e-25 85.9 0.4 3.6e-24 84.0 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20089103|ref|NP_615178.1| - 0.023 14.3 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20089103|ref|NP_615178.1| - 0.057 13.7 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1297 PF06973.7 gi|20089104|ref|NP_615179.1| - 3.4e-66 222.1 0.1 4.8e-66 221.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|20089104|ref|NP_615179.1| - 1.2e-45 154.2 0.0 2.3e-45 153.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|20089104|ref|NP_615179.1| - 2.8e-05 23.9 0.1 0.0064 16.2 0.0 2.5 1 1 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|20089104|ref|NP_615179.1| - 0.00072 19.4 0.0 0.0025 17.6 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|20089104|ref|NP_615179.1| - 0.0032 16.7 0.0 0.0057 15.9 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.2 gi|20089105|ref|NP_615180.1| - 7.2e-11 41.7 0.0 1.5e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20089105|ref|NP_615180.1| - 3.8e-07 29.3 0.6 3.8e-07 29.3 0.4 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|20089105|ref|NP_615180.1| - 3.7e-05 23.2 0.0 7.5e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) TrmB PF01978.14 gi|20089105|ref|NP_615180.1| - 5.9e-05 22.6 0.4 0.00014 21.4 0.3 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|20089105|ref|NP_615180.1| - 0.00026 20.5 0.3 0.00047 19.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TDH PF03347.8 gi|20089105|ref|NP_615180.1| - 0.0042 16.6 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 Vibrio thermostable direct hemolysin HTH_IclR PF09339.5 gi|20089105|ref|NP_615180.1| - 0.011 15.3 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|20089105|ref|NP_615180.1| - 0.017 15.3 0.1 0.04 14.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|20089105|ref|NP_615180.1| - 0.018 14.5 0.6 0.034 13.6 0.4 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit MarR_2 PF12802.2 gi|20089105|ref|NP_615180.1| - 0.025 14.2 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.4 gi|20089105|ref|NP_615180.1| - 0.03 14.2 0.6 0.057 13.3 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|20089105|ref|NP_615180.1| - 0.048 13.4 0.9 0.1 12.4 0.6 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix PseudoU_synth_1 PF01416.15 gi|20089106|ref|NP_615181.1| - 7.5e-37 125.9 0.0 2.9e-22 79.0 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase UPF0020 PF01170.13 gi|20089107|ref|NP_615182.1| - 4.3e-34 117.6 0.0 5.6e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|20089107|ref|NP_615182.1| - 1.1e-14 54.4 0.0 2.2e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|20089107|ref|NP_615182.1| - 2.8e-13 49.9 0.1 9.6e-13 48.2 0.1 1.7 2 0 0 2 2 2 1 THUMP domain N6_N4_Mtase PF01555.13 gi|20089107|ref|NP_615182.1| - 3.2e-09 36.6 0.0 0.0018 17.8 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.7 gi|20089107|ref|NP_615182.1| - 3.9e-09 36.8 0.0 1.5e-08 34.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089107|ref|NP_615182.1| - 8e-08 32.0 0.0 1.6e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|20089107|ref|NP_615182.1| - 0.00012 21.5 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|20089107|ref|NP_615182.1| - 0.0003 20.3 0.0 0.00049 19.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|20089107|ref|NP_615182.1| - 0.00037 21.0 0.0 0.001 19.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089107|ref|NP_615182.1| - 0.0067 15.5 0.0 0.023 13.8 0.0 1.8 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|20089107|ref|NP_615182.1| - 0.0091 15.1 0.0 0.021 13.9 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase MTS PF05175.9 gi|20089107|ref|NP_615182.1| - 0.025 13.9 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|20089107|ref|NP_615182.1| - 0.073 13.4 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Mtf2_C PF14061.1 gi|20089107|ref|NP_615182.1| - 0.081 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Polycomb-like MTF2 factor 2 Methyltransf_23 PF13489.1 gi|20089107|ref|NP_615182.1| - 0.091 12.4 0.0 0.38 10.4 0.0 2.1 2 1 0 2 2 2 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|20089107|ref|NP_615182.1| - 0.1 11.5 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_8 PF05148.10 gi|20089107|ref|NP_615182.1| - 0.11 12.1 0.0 0.33 10.5 0.0 1.7 2 1 0 2 2 2 0 Hypothetical methyltransferase Con-6 PF10346.4 gi|20089107|ref|NP_615182.1| - 0.12 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Conidiation protein 6 DUF1805 PF08827.6 gi|20089108|ref|NP_615183.1| - 3.5e-26 90.7 0.4 4.6e-26 90.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Peptidase_M24 PF00557.19 gi|20089110|ref|NP_615185.1| - 2.3e-48 164.5 0.1 2.7e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|20089111|ref|NP_615186.1| - 5.9e-42 143.5 0.5 1e-41 142.8 0.3 1.4 1 1 0 1 1 1 1 Metallopeptidase family M24 DUF2452 PF10504.4 gi|20089111|ref|NP_615186.1| - 0.027 13.7 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) BSMAP PF12280.3 gi|20089111|ref|NP_615186.1| - 0.038 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Brain specific membrane anchored protein Inhibitor_I42 PF09394.5 gi|20089113|ref|NP_615188.1| - 4.7e-08 33.2 0.4 1.5e-06 28.4 0.3 2.1 1 1 0 1 1 1 1 Chagasin family peptidase inhibitor I42 AdoMet_Synthase PF01941.14 gi|20089114|ref|NP_615189.1| - 1.2e-181 603.5 1.2 1.3e-181 603.3 0.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.13 gi|20089115|ref|NP_615190.1| - 9.1e-52 174.9 0.7 1.3e-51 174.4 0.5 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|20089115|ref|NP_615190.1| - 3.8e-26 90.8 0.2 8e-26 89.7 0.2 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|20089115|ref|NP_615190.1| - 2.1e-06 27.4 0.1 0.00012 21.7 0.0 2.4 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|20089115|ref|NP_615190.1| - 0.00031 20.0 0.0 0.00061 19.1 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF881 PF05949.7 gi|20089115|ref|NP_615190.1| - 0.03 13.7 0.2 0.44 9.9 0.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF881) DUF498 PF04430.9 gi|20089115|ref|NP_615190.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) DUF4265 PF14085.1 gi|20089115|ref|NP_615190.1| - 0.13 12.0 0.0 0.41 10.3 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) His_biosynth PF00977.16 gi|20089116|ref|NP_615191.1| - 2.2e-78 262.6 0.2 2.4e-78 262.5 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|20089116|ref|NP_615191.1| - 1.4e-10 40.5 0.0 0.00014 20.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|20089116|ref|NP_615191.1| - 6.8e-09 35.0 0.3 3.2e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|20089116|ref|NP_615191.1| - 7.5e-09 35.1 0.4 0.00019 20.7 0.0 2.1 2 0 0 2 2 2 2 PcrB family NMO PF03060.10 gi|20089116|ref|NP_615191.1| - 2.1e-07 30.4 0.8 6.5e-06 25.5 0.1 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|20089116|ref|NP_615191.1| - 2.1e-06 26.8 0.1 0.03 13.3 0.0 2.1 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|20089116|ref|NP_615191.1| - 2.1e-05 23.7 0.6 0.00037 19.6 0.0 2.4 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|20089116|ref|NP_615191.1| - 2.8e-05 23.3 0.8 0.1 11.6 0.0 2.3 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|20089116|ref|NP_615191.1| - 3.9e-05 22.8 0.2 0.0054 15.8 0.0 2.1 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|20089116|ref|NP_615191.1| - 0.00029 19.8 0.1 0.57 9.0 0.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.15 gi|20089116|ref|NP_615191.1| - 0.00081 17.9 0.9 0.053 12.0 0.1 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|20089116|ref|NP_615191.1| - 0.00091 18.1 0.5 0.72 8.6 0.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|20089116|ref|NP_615191.1| - 0.0027 16.7 0.2 0.0047 15.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF561) TIM PF00121.13 gi|20089116|ref|NP_615191.1| - 0.14 11.1 0.4 11 5.0 0.0 2.1 2 0 0 2 2 2 0 Triosephosphate isomerase G3P_antiterm PF04309.7 gi|20089116|ref|NP_615191.1| - 0.17 10.8 0.4 1.1 8.3 0.0 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IGPD PF00475.13 gi|20089117|ref|NP_615192.1| - 3.3e-63 211.8 1.3 4.1e-63 211.5 0.9 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase FdhD-NarQ PF02634.10 gi|20089118|ref|NP_615193.1| - 1.1e-52 178.8 0.1 4.5e-51 173.5 0.1 2.0 1 1 0 1 1 1 1 FdhD/NarQ family ABC2_membrane_2 PF12679.2 gi|20089120|ref|NP_615195.1| - 0.079 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein TFIIH_BTF_p62_N PF08567.6 gi|20089120|ref|NP_615195.1| - 0.12 12.0 0.0 0.59 9.8 0.0 2.1 2 1 0 2 2 2 0 TFIIH p62 subunit, N-terminal domain DUF1628 PF07790.6 gi|20089121|ref|NP_615196.1| - 4.3e-22 78.6 0.9 1.1e-21 77.2 0.6 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Arch_flagellin PF01917.11 gi|20089121|ref|NP_615196.1| - 0.00026 20.6 0.1 0.00039 20.0 0.1 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin SCO1-SenC PF02630.9 gi|20089121|ref|NP_615196.1| - 0.022 14.3 0.4 0.039 13.5 0.3 1.4 1 0 0 1 1 1 0 SCO1/SenC Helicase_C PF00271.26 gi|20089121|ref|NP_615196.1| - 0.026 14.3 0.3 0.26 11.1 0.1 2.3 1 1 1 2 2 2 0 Helicase conserved C-terminal domain AF1Q PF15017.1 gi|20089121|ref|NP_615196.1| - 0.04 13.8 1.4 0.12 12.3 0.3 2.3 1 1 0 1 1 1 0 Drug resistance and apoptosis regulator PKD_channel PF08016.7 gi|20089121|ref|NP_615196.1| - 0.12 10.8 0.3 0.19 10.1 0.2 1.2 1 0 0 1 1 1 0 Polycystin cation channel DUF1628 PF07790.6 gi|20089122|ref|NP_615197.1| - 6.9e-25 87.6 3.0 9.6e-25 87.1 0.4 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) TRAM PF01938.15 gi|20089122|ref|NP_615197.1| - 0.12 12.1 0.1 0.28 11.0 0.1 1.7 1 1 0 1 1 1 0 TRAM domain DUF1628 PF07790.6 gi|20089123|ref|NP_615198.1| - 3e-14 53.4 0.2 7.3e-14 52.2 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1670 PF07900.6 gi|20089125|ref|NP_615200.1| - 3.3e-97 324.0 4.3 3.8e-97 323.8 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20089125|ref|NP_615200.1| - 2.4e-06 27.0 0.1 1.1 9.0 0.0 4.1 2 2 2 4 4 4 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20089125|ref|NP_615200.1| - 7e-05 22.2 0.5 2.2 7.7 0.0 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20089125|ref|NP_615200.1| - 0.00028 20.6 0.2 0.52 10.1 0.0 2.8 1 1 2 3 3 3 2 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|20089125|ref|NP_615200.1| - 0.00046 20.3 0.1 1.8 8.8 0.0 2.9 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|20089125|ref|NP_615200.1| - 0.00055 19.5 0.3 0.061 13.0 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|20089125|ref|NP_615200.1| - 0.00086 18.6 0.0 1 8.8 0.0 3.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|20089125|ref|NP_615200.1| - 0.0012 18.3 0.2 0.011 15.2 0.2 2.3 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|20089125|ref|NP_615200.1| - 0.005 16.9 0.1 13 5.9 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|20089125|ref|NP_615200.1| - 0.017 15.0 0.9 5.3 7.0 0.2 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|20089125|ref|NP_615200.1| - 0.018 14.5 1.6 1.4 8.5 0.1 3.3 3 1 1 4 4 4 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|20089125|ref|NP_615200.1| - 0.023 14.3 0.2 12 5.6 0.0 3.0 3 0 0 3 3 3 0 HTH domain Phage_terminase PF10668.4 gi|20089125|ref|NP_615200.1| - 0.056 13.2 0.2 2.3 8.0 0.1 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_10 PF04967.7 gi|20089125|ref|NP_615200.1| - 0.056 13.0 0.1 0.63 9.6 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain DUF1670 PF07900.6 gi|20089126|ref|NP_615201.1| - 1.4e-88 295.7 0.3 1.7e-88 295.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_24 PF13412.1 gi|20089126|ref|NP_615201.1| - 0.00027 20.2 0.2 0.0018 17.6 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20089126|ref|NP_615201.1| - 0.00094 19.2 0.0 0.032 14.3 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20089126|ref|NP_615201.1| - 0.0012 18.4 0.0 7.9 6.2 0.0 3.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_29 PF13551.1 gi|20089126|ref|NP_615201.1| - 0.0013 18.8 0.1 0.35 11.0 0.0 2.9 1 1 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|20089126|ref|NP_615201.1| - 0.0018 17.9 0.8 0.0075 15.8 0.1 2.3 2 1 1 3 3 3 1 HTH domain HTH_17 PF12728.2 gi|20089126|ref|NP_615201.1| - 0.0099 16.1 0.1 0.23 11.7 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|20089126|ref|NP_615201.1| - 0.014 15.0 0.1 0.043 13.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|20089126|ref|NP_615201.1| - 0.016 15.0 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20089126|ref|NP_615201.1| - 0.025 14.0 1.5 7.2 6.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|20089126|ref|NP_615201.1| - 0.025 14.5 0.3 1.1 9.2 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20089126|ref|NP_615201.1| - 0.035 13.6 1.3 3.5 7.2 0.0 3.6 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) MarR PF01047.17 gi|20089126|ref|NP_615201.1| - 0.051 13.2 0.1 0.14 11.8 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|20089126|ref|NP_615201.1| - 0.061 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|20089126|ref|NP_615201.1| - 0.11 12.1 2.1 0.15 11.6 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Hydantoinase_B PF02538.9 gi|20089126|ref|NP_615201.1| - 0.13 10.4 0.2 0.2 9.8 0.1 1.2 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase Trp_repressor PF01371.14 gi|20089126|ref|NP_615201.1| - 0.15 11.9 1.2 6.2 6.8 0.0 2.8 2 1 0 3 3 3 0 Trp repressor protein Phage_int_SAM_1 PF02899.12 gi|20089126|ref|NP_615201.1| - 0.34 11.0 2.0 3.4 7.8 0.1 2.9 2 1 1 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF1628 PF07790.6 gi|20089128|ref|NP_615203.1| - 7e-21 74.7 1.0 7e-21 74.7 0.7 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) hGDE_N PF14699.1 gi|20089129|ref|NP_615204.1| - 0.18 11.6 1.9 4.2 7.2 0.1 2.2 2 1 0 2 2 2 0 N-terminal domain from the human glycogen debranching enzyme DUF1628 PF07790.6 gi|20089130|ref|NP_615205.1| - 1.1e-20 74.1 0.1 1.6e-20 73.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) T2SF PF00482.18 gi|20089131|ref|NP_615206.1| - 6.9e-34 116.4 4.0 5.5e-21 74.7 1.0 4.5 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|20089131|ref|NP_615206.1| - 0.00038 19.3 6.5 0.069 11.9 0.0 2.7 1 1 1 2 2 2 2 Integral peroxisomal membrane peroxin T2SE PF00437.15 gi|20089132|ref|NP_615207.1| - 4.1e-45 153.7 0.0 6.9e-45 153.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|20089132|ref|NP_615207.1| - 0.0045 16.4 0.4 0.016 14.7 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain KaiC PF06745.8 gi|20089133|ref|NP_615208.1| - 6.1e-14 51.6 0.0 7.6e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 KaiC Aminotran_5 PF00266.14 gi|20089134|ref|NP_615209.1| - 1.5e-126 422.0 0.0 1.7e-126 421.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|20089134|ref|NP_615209.1| - 6.2e-10 38.6 0.0 8.7e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|20089134|ref|NP_615209.1| - 2.8e-07 29.1 0.0 4.6e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|20089134|ref|NP_615209.1| - 1.8e-05 24.0 0.0 2.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DUF531 PF04407.7 gi|20089136|ref|NP_615211.1| - 5.2e-84 280.4 0.0 6e-84 280.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Acetyltransf_1 PF00583.19 gi|20089137|ref|NP_615212.1| - 3.7e-15 55.7 0.0 5.6e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20089137|ref|NP_615212.1| - 1e-14 54.4 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089137|ref|NP_615212.1| - 2.1e-09 37.3 0.0 5.6e-09 35.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089137|ref|NP_615212.1| - 2.2e-08 34.2 0.0 3e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20089137|ref|NP_615212.1| - 2.6e-06 27.0 0.0 3.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|20089137|ref|NP_615212.1| - 6e-06 26.2 0.0 0.0012 18.8 0.0 2.1 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20089137|ref|NP_615212.1| - 0.00014 21.6 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|20089137|ref|NP_615212.1| - 0.0016 18.5 0.1 0.0089 16.1 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|20089137|ref|NP_615212.1| - 0.017 14.4 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_8 PF13523.1 gi|20089137|ref|NP_615212.1| - 0.033 14.0 0.0 0.39 10.5 0.0 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Asn_synthase PF00733.16 gi|20089138|ref|NP_615213.1| - 3e-09 36.7 0.3 3.2e-08 33.3 0.0 2.5 1 1 2 3 3 3 1 Asparagine synthase NAD_synthase PF02540.12 gi|20089138|ref|NP_615213.1| - 3.3e-07 29.4 0.0 6.7e-07 28.4 0.0 1.6 1 1 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|20089138|ref|NP_615213.1| - 8.9e-06 25.1 0.1 0.00014 21.2 0.0 2.5 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|20089138|ref|NP_615213.1| - 0.00013 20.6 0.0 0.1 11.1 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|20089138|ref|NP_615213.1| - 0.00039 19.9 0.0 0.0033 16.9 0.0 2.2 1 1 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|20089138|ref|NP_615213.1| - 0.00066 19.1 0.0 0.0019 17.7 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.14 gi|20089138|ref|NP_615213.1| - 0.0025 16.9 0.0 0.019 14.0 0.0 2.0 1 1 0 1 1 1 1 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|20089138|ref|NP_615213.1| - 0.023 14.5 0.0 0.27 11.0 0.0 2.2 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family PGM_PMM_I PF02878.11 gi|20089139|ref|NP_615214.1| - 2e-42 143.9 0.0 9.5e-42 141.7 0.1 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|20089139|ref|NP_615214.1| - 1.2e-27 96.2 0.0 3.5e-27 94.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|20089139|ref|NP_615214.1| - 3.5e-25 88.2 0.0 6.2e-25 87.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|20089139|ref|NP_615214.1| - 1.8e-12 47.0 0.0 8.1e-12 44.9 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|20089139|ref|NP_615214.1| - 0.042 14.4 0.0 0.14 12.7 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089139|ref|NP_615214.1| - 0.052 13.2 0.0 0.61 9.7 0.0 2.3 2 1 1 3 3 3 0 Methyltransferase domain Radical_SAM PF04055.16 gi|20089140|ref|NP_615215.1| - 3.5e-26 92.3 0.4 1.9e-25 89.9 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|20089140|ref|NP_615215.1| - 1.7e-11 44.0 0.0 1e-10 41.5 0.0 2.1 2 0 0 2 2 2 1 B12 binding domain Peptidase_M50 PF02163.17 gi|20089141|ref|NP_615216.1| - 4.6e-15 55.0 11.0 4.6e-15 55.0 7.6 2.8 3 1 0 3 3 3 1 Peptidase family M50 2TM PF13239.1 gi|20089141|ref|NP_615216.1| - 0.78 9.8 5.1 0.34 10.9 0.4 2.5 2 0 0 2 2 2 0 2TM domain DUF126 PF01989.11 gi|20089142|ref|NP_615217.1| - 8.1e-37 124.7 0.6 1.2e-36 124.2 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|20089143|ref|NP_615218.1| - 4.8e-152 506.1 0.1 5.4e-152 505.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|20089144|ref|NP_615219.1| - 3e-128 427.7 1.6 3.4e-128 427.5 1.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VWA_2 PF13519.1 gi|20089145|ref|NP_615220.1| - 5.4e-26 91.7 1.4 1.1e-25 90.6 1.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|20089145|ref|NP_615220.1| - 3.1e-18 66.1 0.6 8.2e-18 64.7 0.4 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|20089145|ref|NP_615220.1| - 9.2e-11 41.6 0.0 6.1e-10 38.9 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|20089145|ref|NP_615220.1| - 0.0038 17.2 0.2 0.0038 17.2 0.1 2.2 2 0 0 2 2 2 1 VWA-like domain (DUF2201) Citrate_synt PF00285.16 gi|20089147|ref|NP_615222.1| - 1.1e-121 405.9 0.0 1.2e-121 405.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Aconitase PF00330.15 gi|161484943|ref|NP_615223.2| - 1.2e-141 472.3 0.0 8.9e-99 331.0 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|161484943|ref|NP_615223.2| - 6.4e-38 129.8 0.0 1.4e-37 128.7 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain NPCBM_assoc PF10633.4 gi|20089149|ref|NP_615224.1| - 4.4e-09 36.2 3.4 0.0026 17.7 0.0 5.1 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.7 gi|20089149|ref|NP_615224.1| - 8.7e-05 22.3 0.1 0.033 13.9 0.0 2.8 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF916) BsuPI PF12690.2 gi|20089149|ref|NP_615224.1| - 0.0013 18.4 0.0 16 5.3 0.0 4.7 5 0 0 5 5 5 1 Intracellular proteinase inhibitor FixG_C PF11614.3 gi|20089149|ref|NP_615224.1| - 0.0021 18.1 0.0 0.13 12.3 0.0 2.7 2 1 0 2 2 2 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4097 PF13349.1 gi|20089149|ref|NP_615224.1| - 0.019 14.5 0.4 0.15 11.6 0.0 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4097) DUF4625 PF15418.1 gi|20089149|ref|NP_615224.1| - 0.027 14.6 0.0 0.38 10.8 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4625) DUF1775 PF07987.6 gi|20089149|ref|NP_615224.1| - 0.089 12.6 0.0 23 4.7 0.0 2.9 3 0 0 3 3 3 0 Domain of unkown function (DUF1775) HSL_N PF06350.7 gi|20089150|ref|NP_615225.1| - 0.13 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Hormone-sensitive lipase (HSL) N-terminus VWA_2 PF13519.1 gi|20089151|ref|NP_615226.1| - 1.2e-09 38.4 0.0 2.2e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|20089151|ref|NP_615226.1| - 1.3e-09 37.5 0.0 2.6e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.1 gi|20089151|ref|NP_615226.1| - 2.2e-07 30.7 0.0 4.5e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|20089151|ref|NP_615226.1| - 5.2e-06 26.2 0.0 1.1e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|20089151|ref|NP_615226.1| - 0.00039 20.4 0.0 0.0008 19.4 0.0 1.6 1 0 0 1 1 1 1 VWA-like domain (DUF2201) CobT_C PF11775.3 gi|20089151|ref|NP_615226.1| - 0.021 14.2 0.1 0.06 12.7 0.0 1.7 1 1 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain AAA_5 PF07728.9 gi|20089152|ref|NP_615227.1| - 2.1e-28 98.7 0.0 3.7e-28 98.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|20089152|ref|NP_615227.1| - 4.4e-07 29.5 0.0 7.1e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|20089152|ref|NP_615227.1| - 8.7e-07 29.2 0.0 2.6e-06 27.6 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|20089152|ref|NP_615227.1| - 0.00061 19.8 0.0 0.0011 19.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain KaiC PF06745.8 gi|20089152|ref|NP_615227.1| - 0.0053 15.8 1.3 1.6 7.7 0.0 2.8 3 0 0 3 3 3 2 KaiC Mg_chelatase PF01078.16 gi|20089152|ref|NP_615227.1| - 0.0073 15.4 0.1 0.026 13.7 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|20089152|ref|NP_615227.1| - 0.0093 15.0 0.1 0.078 12.0 0.1 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|20089152|ref|NP_615227.1| - 0.0095 15.4 0.0 0.056 12.9 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|20089152|ref|NP_615227.1| - 0.012 15.4 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|20089152|ref|NP_615227.1| - 0.053 14.3 4.1 1 10.2 0.0 2.9 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|20089152|ref|NP_615227.1| - 0.1 12.0 0.7 7.9 5.8 0.0 3.0 2 1 0 3 3 3 0 AAA-like domain AAA_25 PF13481.1 gi|20089152|ref|NP_615227.1| - 0.1 11.9 0.0 0.3 10.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain PRP1_N PF06424.7 gi|20089152|ref|NP_615227.1| - 0.11 12.8 4.4 0.2 11.9 0.1 2.2 2 0 0 2 2 2 0 PRP1 splicing factor, N-terminal AAA_11 PF13086.1 gi|20089152|ref|NP_615227.1| - 0.18 11.3 0.5 0.56 9.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain UPF0270 PF06794.7 gi|20089152|ref|NP_615227.1| - 0.52 10.1 4.3 11 5.8 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0270) ThiF PF00899.16 gi|20089153|ref|NP_615228.1| - 3.4e-48 162.9 0.0 4.4e-48 162.5 0.0 1.1 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|20089153|ref|NP_615228.1| - 2.7e-22 78.1 0.0 5e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|20089153|ref|NP_615228.1| - 0.0018 18.4 0.2 0.01 15.9 0.0 1.9 1 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|20089153|ref|NP_615228.1| - 0.09 11.9 0.3 4.1 6.5 0.0 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ndc80_HEC PF03801.8 gi|20089154|ref|NP_615229.1| - 0.044 13.2 0.0 0.067 12.6 0.0 1.2 1 0 0 1 1 1 0 HEC/Ndc80p family Y1_Tnp PF01797.11 gi|20089155|ref|NP_615230.1| - 1.9e-32 111.6 3.1 2.1e-32 111.5 2.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|20089156|ref|NP_615231.1| - 1.1e-46 159.0 3.1 1.1e-46 159.0 2.2 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|20089156|ref|NP_615231.1| - 1.1e-23 82.7 0.6 2e-23 81.7 0.1 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|20089156|ref|NP_615231.1| - 1.4e-21 75.5 0.4 2.6e-21 74.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|20089156|ref|NP_615231.1| - 0.035 14.1 1.8 0.057 13.4 0.7 1.7 2 0 0 2 2 2 0 Piccolo Zn-finger DZR PF12773.2 gi|20089156|ref|NP_615231.1| - 0.054 13.3 0.7 0.11 12.3 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|20089156|ref|NP_615231.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|20089156|ref|NP_615231.1| - 0.96 9.3 6.6 11 6.0 4.6 2.4 1 1 0 1 1 1 0 Rubredoxin zf-RanBP PF00641.13 gi|20089156|ref|NP_615231.1| - 6.1 6.0 8.3 15 4.8 0.3 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Beta_helix PF13229.1 gi|20089157|ref|NP_615232.1| - 1.8e-12 47.2 38.3 5.2e-10 39.3 11.5 2.0 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|20089157|ref|NP_615232.1| - 0.00019 21.6 13.5 0.00097 19.3 9.4 2.2 1 1 0 1 1 1 1 Pectate lyase superfamily protein Glyco_hydro_28 PF00295.12 gi|20089157|ref|NP_615232.1| - 0.00059 18.8 3.1 0.00059 18.8 2.1 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 28 Kelch_4 PF13418.1 gi|20089158|ref|NP_615233.1| - 0.0014 18.3 1.6 7.8 6.3 0.0 5.3 5 1 1 6 6 6 1 Galactose oxidase, central domain Kelch_3 PF13415.1 gi|20089158|ref|NP_615233.1| - 0.014 15.5 1.5 24 5.2 0.0 4.7 3 2 2 5 5 5 0 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|20089158|ref|NP_615233.1| - 0.018 15.2 2.3 8.3 6.7 0.0 4.5 5 0 0 5 5 5 0 Kelch motif ThiC PF01964.13 gi|161484942|ref|NP_615234.2| - 4.5e-150 499.8 0.7 5e-150 499.6 0.5 1.0 1 0 0 1 1 1 1 ThiC family TaqI_C PF12950.2 gi|20089160|ref|NP_615235.1| - 5.6e-05 22.8 0.2 0.00015 21.4 0.2 1.8 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Aldolase_II PF00596.16 gi|20089161|ref|NP_615236.1| - 3e-34 118.2 0.1 3.4e-34 118.0 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CDP-OH_P_transf PF01066.16 gi|20089162|ref|NP_615237.1| - 9.7e-15 54.7 12.4 2.7e-14 53.2 7.6 2.4 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2484 PF10658.4 gi|20089162|ref|NP_615237.1| - 3.2 7.9 8.0 3 8.0 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) Archease PF01951.11 gi|20089163|ref|NP_615238.1| - 1.6e-47 160.8 0.4 1.8e-47 160.7 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) TetR_C_5 PF08360.6 gi|20089163|ref|NP_615238.1| - 0.048 13.6 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 QacR-like protein, C-terminal region RtcB PF01139.12 gi|20089164|ref|NP_615239.1| - 3.4e-155 517.1 0.1 3.8e-155 517.0 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB MtrH PF02007.13 gi|20089167|ref|NP_615242.1| - 1e-145 484.2 0.9 1.2e-145 484.0 0.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF4346 PF14251.1 gi|20089167|ref|NP_615242.1| - 0.073 12.8 0.1 0.73 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4346) MtrG PF04210.8 gi|20089168|ref|NP_615243.1| - 3e-34 116.5 0.2 3.3e-34 116.3 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G TIM PF00121.13 gi|20089168|ref|NP_615243.1| - 0.012 14.6 0.1 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase YqfD PF06898.6 gi|20089168|ref|NP_615243.1| - 0.033 12.8 0.0 0.033 12.8 0.0 1.0 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Bcl-2 PF00452.14 gi|20089168|ref|NP_615243.1| - 0.14 12.2 0.0 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family MtrF PF09472.5 gi|20089169|ref|NP_615244.1| - 2.2e-30 103.6 1.1 2.5e-30 103.5 0.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.9 gi|20089170|ref|NP_615245.1| - 2.8e-82 274.3 3.6 3.6e-82 274.0 2.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|20089170|ref|NP_615245.1| - 0.031 13.4 0.7 0.077 12.2 0.5 1.7 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.7 gi|20089171|ref|NP_615246.1| - 4.8e-46 154.7 0.0 5.4e-46 154.5 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.8 gi|20089172|ref|NP_615247.1| - 1.4e-103 345.5 31.1 1.6e-103 345.3 21.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrD PF04207.7 gi|20089173|ref|NP_615248.1| - 4.2e-110 366.4 25.5 5.1e-110 366.1 17.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.7 gi|20089174|ref|NP_615249.1| - 5.4e-134 445.3 12.1 6.1e-134 445.1 8.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E Na_Pi_cotrans PF02690.10 gi|20089174|ref|NP_615249.1| - 4.3 7.0 14.3 0.84 9.3 6.0 2.4 2 1 0 2 2 2 0 Na+/Pi-cotransporter Adeno_E3_CR2 PF02439.10 gi|20089174|ref|NP_615249.1| - 8.2 6.0 7.3 2 8.0 2.0 2.4 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 AP_endonuc_2 PF01261.19 gi|20089175|ref|NP_615250.1| - 1.1e-28 100.0 0.0 1.3e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1815 PF08844.5 gi|20089175|ref|NP_615250.1| - 0.079 12.5 0.0 0.27 10.8 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1815) TBP PF00352.16 gi|20089176|ref|NP_615251.1| - 9.4e-63 207.5 0.4 2.4e-30 103.7 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|20089176|ref|NP_615251.1| - 2.5e-06 27.4 0.0 0.1 12.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) SSF PF00474.12 gi|20089177|ref|NP_615252.1| - 1e-35 123.2 33.2 1.4e-35 122.7 23.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family SBP_bac_11 PF13531.1 gi|20089178|ref|NP_615253.1| - 1.8e-38 132.4 0.1 2.8e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|20089178|ref|NP_615253.1| - 1.1e-10 41.8 0.3 2e-10 40.9 0.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|20089178|ref|NP_615253.1| - 0.00032 20.1 0.1 0.00058 19.2 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|20089179|ref|NP_615254.1| - 1e-17 64.2 10.8 1e-17 64.2 7.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|20089180|ref|NP_615255.1| - 1e-33 116.5 0.0 1.6e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|20089180|ref|NP_615255.1| - 3.2e-19 68.7 1.4 9.8e-15 54.4 0.1 2.9 2 1 0 2 2 2 2 TOBE domain AAA_21 PF13304.1 gi|20089180|ref|NP_615255.1| - 5.6e-10 39.6 0.4 1.3e-06 28.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|20089180|ref|NP_615255.1| - 3.5e-08 33.3 0.0 1e-07 31.7 0.0 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|20089180|ref|NP_615255.1| - 0.00015 21.0 0.1 0.0017 17.6 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|20089180|ref|NP_615255.1| - 0.0019 18.0 0.0 0.015 15.2 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|20089180|ref|NP_615255.1| - 0.0021 17.1 0.1 0.026 13.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain TOBE_3 PF12857.2 gi|20089180|ref|NP_615255.1| - 0.0033 17.2 0.0 0.0089 15.8 0.0 1.8 1 0 0 1 1 1 1 TOBE-like domain AAA_23 PF13476.1 gi|20089180|ref|NP_615255.1| - 0.0051 17.1 0.2 0.0081 16.5 0.2 1.4 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|20089180|ref|NP_615255.1| - 0.022 14.2 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase T2SE PF00437.15 gi|20089180|ref|NP_615255.1| - 0.034 13.0 0.0 0.056 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|20089180|ref|NP_615255.1| - 0.037 13.4 0.1 0.65 9.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|20089180|ref|NP_615255.1| - 0.066 13.3 0.2 0.87 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain EF_TS PF00889.14 gi|20089180|ref|NP_615255.1| - 0.068 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Elongation factor TS DUF4388 PF14332.1 gi|20089180|ref|NP_615255.1| - 0.077 12.8 0.3 1.1 9.0 0.2 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4388) AAA_16 PF13191.1 gi|20089180|ref|NP_615255.1| - 0.086 12.8 0.2 0.73 9.7 0.0 2.2 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|20089180|ref|NP_615255.1| - 0.17 12.1 0.7 2.2 8.5 0.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TOBE PF03459.12 gi|20089181|ref|NP_615256.1| - 1.2e-14 54.1 0.1 2.1e-14 53.3 0.1 1.4 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.22 gi|20089181|ref|NP_615256.1| - 9.3e-08 31.6 0.0 1.6e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|20089181|ref|NP_615256.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|20089181|ref|NP_615256.1| - 0.062 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TOBE_2 PF08402.5 gi|20089181|ref|NP_615256.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 TOBE domain NPCBM_assoc PF10633.4 gi|20089182|ref|NP_615257.1| - 6.6e-08 32.4 0.9 0.0029 17.6 0.1 3.1 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|20089182|ref|NP_615257.1| - 0.00057 19.8 2.0 0.14 12.2 0.0 3.2 2 1 1 3 3 3 2 CARDB Mcm10 PF09332.6 gi|20089182|ref|NP_615257.1| - 0.042 13.2 0.1 0.06 12.6 0.0 1.2 1 0 0 1 1 1 0 Mcm10 replication factor NPCBM_assoc PF10633.4 gi|20089183|ref|NP_615258.1| - 0.00019 21.4 0.9 0.066 13.2 0.0 3.2 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_S13 PF02113.10 gi|20089183|ref|NP_615258.1| - 0.0076 14.8 0.0 0.0094 14.4 0.0 1.2 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family DUF4442 PF14539.1 gi|20089183|ref|NP_615258.1| - 0.043 13.7 0.1 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4442) DUF4124 PF13511.1 gi|20089183|ref|NP_615258.1| - 0.1 12.6 0.0 0.37 10.8 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4124) MMPL PF03176.10 gi|20089184|ref|NP_615259.1| - 3e-57 193.8 13.8 1.1e-29 103.1 0.2 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|20089184|ref|NP_615259.1| - 5.7e-17 61.5 5.6 1.7e-08 34.1 0.2 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|20089184|ref|NP_615259.1| - 6.7e-11 40.8 15.9 7.2e-05 20.9 3.6 3.1 3 0 0 3 3 3 3 Patched family SecD_SecF PF02355.11 gi|20089184|ref|NP_615259.1| - 1.2e-09 37.6 5.5 1.2e-09 37.6 3.8 2.6 3 0 0 3 3 3 1 Protein export membrane protein ACR_tran PF00873.14 gi|20089184|ref|NP_615259.1| - 9.2e-09 33.3 20.3 5.6e-05 20.7 5.7 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family DUF4003 PF13170.1 gi|20089184|ref|NP_615259.1| - 0.0041 16.4 0.0 2 7.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF4003) TrmB PF01978.14 gi|20089185|ref|NP_615260.1| - 3.4e-23 81.1 0.6 5.4e-23 80.4 0.4 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|20089185|ref|NP_615260.1| - 0.0011 18.0 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.1 gi|20089185|ref|NP_615260.1| - 0.0037 17.5 0.0 0.0092 16.2 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|20089185|ref|NP_615260.1| - 0.0041 16.5 0.0 0.012 15.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|20089185|ref|NP_615260.1| - 0.0093 15.5 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|20089185|ref|NP_615260.1| - 0.012 15.5 0.0 0.03 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|20089185|ref|NP_615260.1| - 0.019 15.0 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.9 gi|20089185|ref|NP_615260.1| - 0.022 14.5 0.1 0.051 13.3 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family YgaB PF14182.1 gi|20089185|ref|NP_615260.1| - 0.1 12.8 0.2 0.46 10.7 0.1 2.0 2 0 0 2 2 2 0 YgaB-like protein HTH_20 PF12840.2 gi|20089185|ref|NP_615260.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|20089185|ref|NP_615260.1| - 0.13 11.8 0.0 0.34 10.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain MULE PF10551.4 gi|20089186|ref|NP_615261.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20089186|ref|NP_615261.1| - 0.021 13.3 0.0 0.035 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20089186|ref|NP_615261.1| - 0.028 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20089186|ref|NP_615261.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20089186|ref|NP_615261.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20089186|ref|NP_615261.1| - 0.093 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20089186|ref|NP_615261.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20089186|ref|NP_615261.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger Lactamase_B_3 PF13483.1 gi|20089187|ref|NP_615262.1| - 7.2e-39 133.1 0.0 9e-39 132.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|20089187|ref|NP_615262.1| - 5.6e-20 71.7 0.0 2e-19 69.9 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20089187|ref|NP_615262.1| - 0.00019 21.1 4.8 0.19 11.3 0.9 2.5 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Rpr2 PF04032.11 gi|20089188|ref|NP_615263.1| - 6.1e-22 77.3 0.5 8.5e-22 76.8 0.3 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_2 PF13240.1 gi|20089188|ref|NP_615263.1| - 0.009 15.4 0.1 0.017 14.6 0.0 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|20089188|ref|NP_615263.1| - 0.016 14.9 0.4 0.033 14.0 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon UCR_TM PF02921.9 gi|20089189|ref|NP_615264.1| - 0.015 15.5 0.2 0.024 14.8 0.2 1.4 1 0 0 1 1 1 0 Ubiquinol cytochrome reductase transmembrane region P12 PF12669.2 gi|20089189|ref|NP_615264.1| - 1.2 9.3 10.5 0.23 11.6 1.7 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family SRP19 PF01922.12 gi|20089190|ref|NP_615265.1| - 1.2e-27 96.2 0.2 1.4e-27 96.0 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein DUF3696 PF12476.3 gi|20089192|ref|NP_615267.1| - 0.091 12.7 1.3 0.19 11.7 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3696) Tad PF13400.1 gi|20089192|ref|NP_615267.1| - 1.8 8.6 0.0 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF1628 PF07790.6 gi|20089193|ref|NP_615268.1| - 3.1e-09 37.4 0.0 3.5e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF3450 PF11932.3 gi|20089194|ref|NP_615269.1| - 0.012 14.9 1.3 0.012 14.9 0.9 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) RR_TM4-6 PF06459.7 gi|20089194|ref|NP_615269.1| - 0.06 13.2 1.9 0.075 12.9 1.3 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Patched PF02460.13 gi|20089194|ref|NP_615269.1| - 0.088 10.7 0.4 0.11 10.4 0.3 1.2 1 0 0 1 1 1 0 Patched family DUF4337 PF14235.1 gi|20089194|ref|NP_615269.1| - 0.11 12.2 3.3 0.19 11.5 2.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) S6PP_C PF08472.5 gi|20089194|ref|NP_615269.1| - 6.6 6.3 16.8 0.12 11.9 6.1 2.0 1 1 1 2 2 2 0 Sucrose-6-phosphate phosphohydrolase C-terminal Methyltransf_31 PF13847.1 gi|20089195|ref|NP_615270.1| - 4.4e-23 81.5 0.0 7e-23 80.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089195|ref|NP_615270.1| - 9.6e-23 80.5 0.0 3.6e-22 78.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089195|ref|NP_615270.1| - 2.6e-18 66.2 0.0 5.7e-18 65.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089195|ref|NP_615270.1| - 2.2e-15 57.1 0.0 4.3e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089195|ref|NP_615270.1| - 4.3e-14 52.1 0.0 8.2e-14 51.2 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20089195|ref|NP_615270.1| - 1.5e-13 50.9 0.0 2.4e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089195|ref|NP_615270.1| - 4.3e-13 49.5 0.0 8.4e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20089195|ref|NP_615270.1| - 1e-10 41.6 0.0 4.5e-10 39.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089195|ref|NP_615270.1| - 2e-07 30.5 0.0 5.7e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|20089195|ref|NP_615270.1| - 3.2e-05 23.3 0.0 6.1e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW TPMT PF05724.6 gi|20089195|ref|NP_615270.1| - 0.00074 19.0 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.6 gi|20089195|ref|NP_615270.1| - 0.00088 18.0 0.0 0.0021 16.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) TehB PF03848.9 gi|20089195|ref|NP_615270.1| - 0.002 17.3 0.0 0.0027 16.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RQC PF09382.5 gi|20089195|ref|NP_615270.1| - 0.0054 16.4 0.0 0.011 15.3 0.0 1.5 1 1 0 1 1 1 1 RQC domain Methyltransf_32 PF13679.1 gi|20089195|ref|NP_615270.1| - 0.0073 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain 3HCDH_N PF02737.13 gi|20089195|ref|NP_615270.1| - 0.0081 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CMAS PF02353.15 gi|20089195|ref|NP_615270.1| - 0.0097 15.0 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|20089195|ref|NP_615270.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|20089195|ref|NP_615270.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|20089195|ref|NP_615270.1| - 0.031 13.8 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|20089195|ref|NP_615270.1| - 0.032 13.6 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) ABC_tran PF00005.22 gi|20089196|ref|NP_615271.1| - 5.3e-30 104.5 0.0 7.1e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089196|ref|NP_615271.1| - 4.8e-07 30.0 1.8 0.0017 18.3 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20089196|ref|NP_615271.1| - 0.005 16.3 1.3 0.89 8.9 0.2 2.3 2 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|20089196|ref|NP_615271.1| - 0.015 14.8 0.1 0.027 14.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|20089196|ref|NP_615271.1| - 0.022 13.8 0.0 0.05 12.7 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|20089196|ref|NP_615271.1| - 0.077 13.3 0.0 0.38 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|20089196|ref|NP_615271.1| - 0.089 13.0 0.1 1.9 8.6 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|20089196|ref|NP_615271.1| - 0.12 11.8 0.1 0.2 11.0 0.1 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|20089197|ref|NP_615272.1| - 5.1e-22 78.6 0.0 7.4e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20089197|ref|NP_615272.1| - 1.4e-14 54.2 0.1 3.6e-14 52.8 0.1 1.8 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20089197|ref|NP_615272.1| - 1.1e-09 38.6 0.1 4.3e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|20089197|ref|NP_615272.1| - 0.00011 21.6 0.0 0.19 11.1 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.1 gi|20089197|ref|NP_615272.1| - 0.0021 17.5 0.1 0.004 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20089197|ref|NP_615272.1| - 0.07 13.1 0.1 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|20089197|ref|NP_615272.1| - 0.078 13.1 0.0 0.34 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|20089197|ref|NP_615272.1| - 0.15 11.5 0.0 0.34 10.3 0.0 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|20089197|ref|NP_615272.1| - 0.16 10.9 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) BPD_transp_1 PF00528.17 gi|20089198|ref|NP_615273.1| - 2e-30 105.7 7.1 2e-30 105.7 4.9 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20089198|ref|NP_615273.1| - 2.8e-07 29.8 0.2 2.8e-07 29.8 0.1 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|20089199|ref|NP_615274.1| - 1.9e-45 154.6 11.1 1.9e-45 154.6 7.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|20089200|ref|NP_615275.1| - 1.1e-89 300.8 0.9 1.3e-89 300.6 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle NfeD PF01957.13 gi|20089200|ref|NP_615275.1| - 0.062 13.4 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Methyltransf_11 PF08241.7 gi|20089201|ref|NP_615276.1| - 3.4e-26 91.5 0.0 9.9e-26 90.0 0.0 1.8 3 0 0 3 3 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089201|ref|NP_615276.1| - 9.1e-26 90.2 0.0 1.3e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089201|ref|NP_615276.1| - 1.7e-17 63.5 0.0 2.7e-17 62.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089201|ref|NP_615276.1| - 1.7e-17 63.9 0.0 2.8e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089201|ref|NP_615276.1| - 7.9e-16 58.3 0.0 1.3e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089201|ref|NP_615276.1| - 2.9e-14 53.2 0.0 5.3e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089201|ref|NP_615276.1| - 1.6e-13 50.3 0.0 2.4e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20089201|ref|NP_615276.1| - 1.7e-11 44.1 0.0 4.9e-11 42.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089201|ref|NP_615276.1| - 1.7e-08 34.0 0.0 3e-08 33.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|20089201|ref|NP_615276.1| - 4.3e-06 26.2 0.0 6.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|20089201|ref|NP_615276.1| - 6.7e-05 22.5 0.0 9.6e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|20089201|ref|NP_615276.1| - 7.5e-05 22.4 0.0 0.00013 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|20089201|ref|NP_615276.1| - 0.00011 20.9 0.0 0.00026 19.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_15 PF09445.5 gi|20089201|ref|NP_615276.1| - 0.0002 20.9 0.0 0.00028 20.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.15 gi|20089201|ref|NP_615276.1| - 0.00029 20.0 0.1 0.00094 18.3 0.0 1.8 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|20089201|ref|NP_615276.1| - 0.00042 19.5 0.0 0.00059 19.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB UPF0020 PF01170.13 gi|20089201|ref|NP_615276.1| - 0.00051 19.6 0.0 0.00093 18.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CheR PF01739.13 gi|20089201|ref|NP_615276.1| - 0.00076 18.8 0.0 0.29 10.4 0.0 2.3 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain TPMT PF05724.6 gi|20089201|ref|NP_615276.1| - 0.00089 18.7 0.0 0.0022 17.4 0.0 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|20089201|ref|NP_615276.1| - 0.0021 17.2 0.0 0.0031 16.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) AdoMet_MTase PF07757.8 gi|20089201|ref|NP_615276.1| - 0.0074 16.3 0.0 0.021 14.9 0.0 1.8 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Methyltransf_4 PF02390.12 gi|20089201|ref|NP_615276.1| - 0.0089 15.0 0.0 0.017 14.1 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase DREV PF05219.7 gi|20089201|ref|NP_615276.1| - 0.009 14.9 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|20089201|ref|NP_615276.1| - 0.01 15.2 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|20089201|ref|NP_615276.1| - 0.01 14.8 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|20089201|ref|NP_615276.1| - 0.089 11.7 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Mur_ligase PF01225.20 gi|20089201|ref|NP_615276.1| - 0.094 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain FtsJ PF01728.14 gi|20089201|ref|NP_615276.1| - 0.12 12.3 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 FtsJ-like methyltransferase FmdE PF02663.9 gi|20089202|ref|NP_615277.1| - 1.1e-28 99.7 0.0 1.5e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zinc_ribbon_5 PF13719.1 gi|20089202|ref|NP_615277.1| - 0.016 14.8 0.2 0.038 13.5 0.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20089202|ref|NP_615277.1| - 0.037 13.7 0.1 0.095 12.4 0.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|20089202|ref|NP_615277.1| - 0.073 12.7 0.3 0.17 11.6 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|20089202|ref|NP_615277.1| - 0.25 11.1 1.8 0.58 9.9 1.2 1.7 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Fer4 PF00037.22 gi|20089203|ref|NP_615278.1| - 1.1e-50 167.3 86.6 2.7e-07 29.8 5.2 8.1 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089203|ref|NP_615278.1| - 7.5e-44 147.9 121.7 1.5e-09 38.0 7.8 5.6 2 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089203|ref|NP_615278.1| - 2.6e-34 115.6 80.7 2.7e-06 26.9 1.5 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20089203|ref|NP_615278.1| - 5.2e-34 116.3 62.1 5.1e-09 36.2 8.6 5.8 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089203|ref|NP_615278.1| - 2.2e-31 108.3 52.3 8.8e-11 42.3 2.5 7.2 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20089203|ref|NP_615278.1| - 6.4e-29 99.5 60.9 9.3e-08 31.7 6.6 6.9 5 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089203|ref|NP_615278.1| - 7.4e-26 89.7 70.0 5.7e-07 29.3 6.0 6.3 4 3 3 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089203|ref|NP_615278.1| - 6.4e-24 83.7 125.4 4.6e-08 32.9 5.5 5.5 1 1 6 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089203|ref|NP_615278.1| - 5.4e-22 76.3 79.9 1.1e-05 25.0 2.1 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089203|ref|NP_615278.1| - 9.9e-21 73.8 51.4 2.3e-06 27.8 6.5 5.8 5 1 0 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089203|ref|NP_615278.1| - 6.2e-19 66.6 74.3 0.00019 21.5 2.0 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20089203|ref|NP_615278.1| - 4.1e-16 59.1 67.6 0.0016 18.8 0.4 8.1 6 2 2 8 8 8 7 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20089203|ref|NP_615278.1| - 1.2e-13 50.5 108.7 0.0063 16.9 4.4 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089203|ref|NP_615278.1| - 3.9e-08 33.7 66.5 0.023 15.2 0.3 8.8 7 1 1 8 8 8 4 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20089203|ref|NP_615278.1| - 0.0021 18.3 77.3 0.43 10.9 1.8 8.5 7 1 0 7 7 7 4 4Fe-4S single cluster domain Amidohydro_3 PF07969.6 gi|20089204|ref|NP_615279.1| - 1.1e-72 245.5 0.3 1.3e-72 245.2 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20089204|ref|NP_615279.1| - 1.9e-11 43.6 0.1 1.7e-10 40.5 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|20089204|ref|NP_615279.1| - 8.9e-07 29.2 1.1 0.00034 20.7 0.1 2.6 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|20089204|ref|NP_615279.1| - 0.0001 22.0 0.3 0.39 10.3 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Orthopox_F7 PF05813.7 gi|20089204|ref|NP_615279.1| - 0.13 12.2 0.0 6.8 6.6 0.0 3.1 3 0 0 3 3 3 0 Orthopoxvirus F7 protein GXGXG PF01493.14 gi|20089205|ref|NP_615280.1| - 6.1e-41 139.6 24.3 9.3e-41 139.0 16.8 1.2 1 0 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.16 gi|20089206|ref|NP_615281.1| - 1.4e-15 57.0 0.0 1.7e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|20089207|ref|NP_615282.1| - 9.6e-15 54.2 0.0 7.2e-14 51.3 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase SIMPL PF04402.9 gi|20089209|ref|NP_615284.1| - 3.4e-50 170.8 12.1 4e-50 170.6 8.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4448 PF14610.1 gi|20089209|ref|NP_615284.1| - 0.016 14.7 0.2 0.053 13.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) YbaB_DNA_bd PF02575.11 gi|20089209|ref|NP_615284.1| - 0.91 9.4 7.1 0.22 11.4 0.9 2.8 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family Phage_CI_repr PF07022.8 gi|20089210|ref|NP_615285.1| - 0.0015 18.5 0.5 1.2 9.3 0.0 2.7 1 1 2 3 3 3 2 Bacteriophage CI repressor helix-turn-helix domain Nuc_recep-AF1 PF11825.3 gi|20089210|ref|NP_615285.1| - 0.1 12.5 0.3 0.18 11.7 0.2 1.5 1 1 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 Fibroin_P25 PF07294.6 gi|20089210|ref|NP_615285.1| - 0.18 11.2 3.3 1.8 8.0 0.3 2.7 1 1 2 3 3 3 0 Fibroin P25 Acetyltransf_6 PF13480.1 gi|20089211|ref|NP_615286.1| - 1.5e-09 37.9 0.0 4.9e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|20089211|ref|NP_615286.1| - 5.7e-05 21.9 0.1 0.014 14.1 0.0 2.9 2 1 1 3 3 3 2 FemAB family Acetyltransf_9 PF13527.1 gi|20089211|ref|NP_615286.1| - 0.0023 17.7 0.0 0.021 14.7 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF482 PF04339.7 gi|20089211|ref|NP_615286.1| - 0.024 13.5 0.0 0.25 10.1 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function, DUF482 RNA_pol_Rpb2_3 PF04565.11 gi|20089211|ref|NP_615286.1| - 0.12 12.1 0.0 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 3 Methyltransf_12 PF08242.7 gi|20089212|ref|NP_615287.1| - 5e-15 55.7 0.0 8.6e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20089212|ref|NP_615287.1| - 2e-13 50.0 0.1 6.7e-13 48.3 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|20089212|ref|NP_615287.1| - 9e-13 48.5 0.0 2.6e-12 47.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089212|ref|NP_615287.1| - 1.2e-12 47.6 0.1 1.8e-12 47.1 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089212|ref|NP_615287.1| - 1.6e-11 44.7 0.0 2.7e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089212|ref|NP_615287.1| - 7.5e-11 42.2 0.0 1.6e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089212|ref|NP_615287.1| - 3.4e-10 39.8 0.0 6.5e-10 38.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089212|ref|NP_615287.1| - 2.2e-07 30.4 0.0 3.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|20089212|ref|NP_615287.1| - 1.3e-06 27.6 0.0 2.6e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.12 gi|20089212|ref|NP_615287.1| - 2.7e-06 26.5 0.0 4.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|20089212|ref|NP_615287.1| - 3.6e-06 26.6 0.0 5.2e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|20089212|ref|NP_615287.1| - 8.7e-06 25.0 0.0 1.3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|20089212|ref|NP_615287.1| - 0.00014 21.8 0.0 0.00024 21.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20089212|ref|NP_615287.1| - 0.0026 17.1 0.0 0.0092 15.3 0.0 1.8 2 1 0 2 2 2 1 Nodulation protein S (NodS) TPMT PF05724.6 gi|20089212|ref|NP_615287.1| - 0.0049 16.3 0.0 0.0068 15.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|20089212|ref|NP_615287.1| - 0.0055 15.8 0.0 0.0081 15.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|20089212|ref|NP_615287.1| - 0.025 14.1 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TRM13 PF05206.9 gi|20089212|ref|NP_615287.1| - 0.028 13.6 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase TRM13 Pox_MCEL PF03291.11 gi|20089212|ref|NP_615287.1| - 0.035 12.9 0.3 0.14 10.9 0.0 2.1 3 0 0 3 3 3 0 mRNA capping enzyme RE_AlwI PF09491.5 gi|20089213|ref|NP_615288.1| - 0.047 12.1 0.8 0.45 8.9 0.1 2.1 2 0 0 2 2 2 0 AlwI restriction endonuclease DnaI_N PF07319.6 gi|20089213|ref|NP_615288.1| - 0.12 12.6 0.0 1.5 9.0 0.0 2.4 2 0 0 2 2 2 0 Primosomal protein DnaI N-terminus Formyl_trans_N PF00551.14 gi|20089214|ref|NP_615289.1| - 3.8e-51 173.1 0.0 4.4e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Hydrolase_3 PF08282.7 gi|20089215|ref|NP_615290.1| - 6.3e-23 81.6 0.1 7e-23 81.4 0.1 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|20089215|ref|NP_615290.1| - 2.7e-05 23.6 0.0 3.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.1 gi|20089215|ref|NP_615290.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20089215|ref|NP_615290.1| - 0.053 13.6 0.1 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF4571 PF15137.1 gi|20089215|ref|NP_615290.1| - 0.092 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4571) Hydrolase_3 PF08282.7 gi|20089216|ref|NP_615291.1| - 5.7e-22 78.5 0.1 6.4e-22 78.3 0.1 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|20089216|ref|NP_615291.1| - 6.5e-09 35.4 0.1 7.8e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Acetyltransf_1 PF00583.19 gi|20089218|ref|NP_615293.1| - 1.1e-13 50.9 0.1 1.4e-13 50.6 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20089218|ref|NP_615293.1| - 9.9e-10 38.4 0.4 1.4e-09 37.9 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089218|ref|NP_615293.1| - 6.7e-06 26.2 0.0 8.2e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20089218|ref|NP_615293.1| - 8.5e-05 22.2 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|20089218|ref|NP_615293.1| - 0.00011 22.0 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|20089218|ref|NP_615293.1| - 0.00034 20.6 0.5 0.00058 19.8 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.13 gi|20089218|ref|NP_615293.1| - 0.0028 16.9 0.0 0.0043 16.2 0.0 1.4 1 0 0 1 1 1 1 MOZ/SAS family Acetyltransf_3 PF13302.1 gi|20089218|ref|NP_615293.1| - 0.0037 17.4 0.1 0.0041 17.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20089218|ref|NP_615293.1| - 0.0049 16.7 0.0 0.0058 16.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089218|ref|NP_615293.1| - 0.0059 16.4 0.0 0.0095 15.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|20089218|ref|NP_615293.1| - 0.036 13.3 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF364 PF04016.7 gi|20089219|ref|NP_615294.1| - 1.3e-41 141.3 0.0 2.3e-41 140.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|20089219|ref|NP_615294.1| - 6e-24 84.0 0.0 1.1e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) QRPTase_C PF01729.14 gi|20089220|ref|NP_615295.1| - 1.4e-25 89.7 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|20089220|ref|NP_615295.1| - 1.1e-12 47.5 0.0 2.4e-12 46.4 0.0 1.6 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Tropomodulin PF03250.9 gi|20089220|ref|NP_615295.1| - 0.13 11.8 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Tropomodulin ABC_tran PF00005.22 gi|20089221|ref|NP_615296.1| - 1e-30 106.8 0.0 1.7e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|20089221|ref|NP_615296.1| - 1.2e-18 66.8 0.1 6.1e-14 51.8 0.0 3.3 2 1 0 2 2 2 2 TOBE domain AAA_21 PF13304.1 gi|20089221|ref|NP_615296.1| - 2e-10 41.1 0.5 4.2e-08 33.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20089221|ref|NP_615296.1| - 8e-07 28.5 0.1 6.3e-06 25.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20089221|ref|NP_615296.1| - 5.5e-06 26.5 0.0 1.1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|20089221|ref|NP_615296.1| - 6.1e-06 26.0 0.1 4.5e-05 23.2 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|20089221|ref|NP_615296.1| - 0.00052 19.1 0.0 0.047 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|20089221|ref|NP_615296.1| - 0.00065 19.1 0.1 0.0025 17.3 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20089221|ref|NP_615296.1| - 0.0047 17.0 0.0 0.015 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|20089221|ref|NP_615296.1| - 0.006 16.5 0.0 0.02 14.8 0.0 2.0 1 1 0 1 1 1 1 TOBE domain AAA_33 PF13671.1 gi|20089221|ref|NP_615296.1| - 0.017 14.9 0.0 0.075 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|20089221|ref|NP_615296.1| - 0.029 13.5 0.0 0.13 11.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|20089221|ref|NP_615296.1| - 0.038 13.6 0.1 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|20089221|ref|NP_615296.1| - 0.055 13.7 0.2 0.1 12.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20089221|ref|NP_615296.1| - 0.063 12.7 0.1 0.3 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|20089221|ref|NP_615296.1| - 0.13 11.3 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BPD_transp_1 PF00528.17 gi|20089222|ref|NP_615297.1| - 2.2e-17 63.1 12.9 2.2e-17 63.1 8.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3595 PF12166.3 gi|20089222|ref|NP_615297.1| - 0.045 12.5 0.9 0.063 12.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3595) SBP_bac_11 PF13531.1 gi|20089223|ref|NP_615298.1| - 8.7e-45 153.1 0.0 1e-44 152.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|20089223|ref|NP_615298.1| - 0.00053 18.9 0.0 0.0014 17.6 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|20089223|ref|NP_615298.1| - 0.0014 18.3 0.5 0.053 13.2 0.4 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.15 gi|20089223|ref|NP_615298.1| - 0.0034 16.6 0.0 0.012 14.9 0.0 1.7 1 1 1 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 ox_reductase_C PF08635.5 gi|20089223|ref|NP_615298.1| - 0.081 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative oxidoreductase C terminal Flavodoxin_2 PF02525.12 gi|20089224|ref|NP_615299.1| - 5.5e-58 195.7 0.0 6.1e-58 195.6 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|20089224|ref|NP_615299.1| - 7.6e-17 61.2 0.0 1.7e-15 56.8 0.0 2.4 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Pox_A_type_inc PF04508.7 gi|20089224|ref|NP_615299.1| - 0.22 11.4 1.3 0.6 10.0 0.9 1.8 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat FMN_red PF03358.10 gi|20089225|ref|NP_615300.1| - 6.9e-29 100.3 0.0 9.9e-29 99.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20089225|ref|NP_615300.1| - 4.6e-10 39.3 0.0 5.3e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|20089225|ref|NP_615300.1| - 0.00082 19.0 0.3 0.0012 18.4 0.2 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Flavodoxin_5 PF12724.2 gi|20089225|ref|NP_615300.1| - 0.13 12.2 0.0 1 9.3 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain ADH_N PF08240.7 gi|20089225|ref|NP_615300.1| - 2.7 7.7 6.2 36 4.1 3.0 2.2 1 1 0 2 2 2 0 Alcohol dehydrogenase GroES-like domain Flavin_Reduct PF01613.13 gi|20089226|ref|NP_615301.1| - 1.3e-20 73.8 0.0 1.6e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain ABM PF03992.11 gi|20089227|ref|NP_615302.1| - 1.3e-18 66.8 0.0 1.6e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Wyosine_form PF08608.7 gi|20089227|ref|NP_615302.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Wyosine base formation Nitroreductase PF00881.19 gi|20089228|ref|NP_615303.1| - 3.2e-34 118.1 0.0 4.9e-34 117.5 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|20089228|ref|NP_615303.1| - 0.08 12.1 0.8 5.5 6.1 0.0 2.3 2 1 1 3 3 3 0 Putative TM nitroreductase Fer4 PF00037.22 gi|20089229|ref|NP_615304.1| - 1.1e-08 34.3 10.3 2e-06 27.1 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089229|ref|NP_615304.1| - 5e-07 30.3 9.3 1.7e-06 28.6 6.4 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20089229|ref|NP_615304.1| - 7.4e-07 28.8 9.2 1.6e-06 27.7 6.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089229|ref|NP_615304.1| - 1.1e-06 28.2 9.7 0.00056 19.6 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20089229|ref|NP_615304.1| - 1.2e-06 28.4 1.9 0.0028 17.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089229|ref|NP_615304.1| - 3.6e-06 27.1 20.4 0.00041 20.5 7.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089229|ref|NP_615304.1| - 8.3e-06 26.0 7.6 2.6e-05 24.5 5.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089229|ref|NP_615304.1| - 9.1e-05 22.8 6.5 0.014 15.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089229|ref|NP_615304.1| - 0.00033 20.7 8.6 0.005 17.0 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089229|ref|NP_615304.1| - 0.00039 20.1 12.0 0.0051 16.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20089229|ref|NP_615304.1| - 0.0012 19.2 14.5 0.05 14.1 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089229|ref|NP_615304.1| - 0.0017 18.6 8.1 0.21 11.9 5.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Dehalogenase PF13486.1 gi|20089229|ref|NP_615304.1| - 0.051 13.0 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_21 PF14697.1 gi|20089229|ref|NP_615304.1| - 0.062 13.1 11.4 0.41 10.5 7.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20089229|ref|NP_615304.1| - 0.14 12.5 4.2 1.3 9.4 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|20089229|ref|NP_615304.1| - 0.14 12.0 4.3 7.4 6.5 1.6 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain FMN_red PF03358.10 gi|20089230|ref|NP_615305.1| - 1.7e-26 92.5 0.0 1.8e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20089230|ref|NP_615305.1| - 8.7e-15 54.7 0.0 1e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|20089230|ref|NP_615305.1| - 0.0068 16.4 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain HxlR PF01638.12 gi|20089231|ref|NP_615306.1| - 1.6e-34 117.3 0.0 2e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|20089231|ref|NP_615306.1| - 0.0065 16.2 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.7 gi|20089231|ref|NP_615306.1| - 0.013 13.6 0.0 0.016 13.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR PF01047.17 gi|20089231|ref|NP_615306.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|20089231|ref|NP_615306.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 MarR family MatE PF01554.13 gi|20089232|ref|NP_615307.1| - 3.9e-51 172.8 42.0 1.4e-27 96.2 9.1 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|20089232|ref|NP_615307.1| - 7.2e-10 38.8 16.4 4.2e-09 36.3 5.1 5.1 3 2 2 5 5 5 3 Polysaccharide biosynthesis C-terminal domain Helicase_C_2 PF13307.1 gi|20089233|ref|NP_615308.1| - 9.8e-29 100.4 0.0 3.5e-28 98.6 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|20089233|ref|NP_615308.1| - 1e-17 64.0 1.4 1.3e-16 60.4 1.0 2.2 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|20089233|ref|NP_615308.1| - 9.4e-07 28.8 1.3 5.1e-06 26.4 0.9 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|20089233|ref|NP_615308.1| - 0.00056 19.4 0.2 0.026 14.0 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|20089233|ref|NP_615308.1| - 0.0014 17.9 0.1 0.0052 16.0 0.0 1.9 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.7 gi|20089233|ref|NP_615308.1| - 0.0071 15.8 0.0 0.48 9.8 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) MCM_N PF14551.1 gi|20089233|ref|NP_615308.1| - 0.062 13.7 0.0 0.16 12.4 0.0 1.8 1 0 0 1 1 1 0 MCM N-terminal domain AAA_34 PF13872.1 gi|20089233|ref|NP_615308.1| - 0.19 10.4 0.0 0.96 8.1 0.0 1.9 1 1 1 2 2 2 0 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.4 gi|20089233|ref|NP_615308.1| - 0.37 9.7 1.6 8.7 5.2 1.1 2.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NosD PF05048.8 gi|20089234|ref|NP_615309.1| - 5.5e-60 202.4 33.7 5.5e-60 202.4 23.4 2.5 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|20089234|ref|NP_615309.1| - 6.8e-54 179.5 48.1 5.8e-18 64.4 5.0 4.6 4 0 0 4 4 4 4 PKD domain Beta_helix PF13229.1 gi|20089234|ref|NP_615309.1| - 6.7e-18 64.9 35.0 2.4e-17 63.1 24.3 2.0 1 0 0 1 1 1 1 Right handed beta helix region Spore_YtfJ PF09579.5 gi|20089235|ref|NP_615310.1| - 1.9e-22 78.8 3.4 3.4e-22 78.0 2.4 1.4 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.3 gi|20089236|ref|NP_615311.1| - 1.3e-14 53.8 0.3 3.6e-14 52.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2953) Neur_chan_memb PF02932.11 gi|20089236|ref|NP_615311.1| - 0.16 11.8 2.8 0.41 10.4 1.8 1.7 1 1 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region GHMP_kinases_N PF00288.21 gi|20089237|ref|NP_615312.1| - 9.5e-07 28.7 1.4 1.9e-06 27.8 1.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|20089237|ref|NP_615312.1| - 4.4e-06 26.8 0.0 8.3e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Nop PF01798.13 gi|20089238|ref|NP_615313.1| - 2.7e-55 185.7 0.1 4.2e-55 185.1 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|20089238|ref|NP_615313.1| - 1.7e-10 40.5 0.0 3.2e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|20089239|ref|NP_615314.1| - 1e-85 286.2 0.0 1.3e-85 286.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.7 gi|20089239|ref|NP_615314.1| - 0.12 11.2 0.0 0.22 10.3 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase HTH_20 PF12840.2 gi|20089240|ref|NP_615315.1| - 1.9e-10 40.3 0.2 4.2e-10 39.2 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|20089240|ref|NP_615315.1| - 4e-08 32.7 0.3 6.8e-08 32.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|20089240|ref|NP_615315.1| - 8.3e-05 21.8 0.1 0.00023 20.4 0.1 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20089240|ref|NP_615315.1| - 0.00015 21.3 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20089240|ref|NP_615315.1| - 0.00069 19.2 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20089240|ref|NP_615315.1| - 0.0092 15.6 0.1 0.036 13.7 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|20089240|ref|NP_615315.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF4423 PF14394.1 gi|20089240|ref|NP_615315.1| - 0.024 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_34 PF13601.1 gi|20089240|ref|NP_615315.1| - 0.028 14.4 0.2 0.071 13.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Nit_Regul_Hom PF10126.4 gi|20089240|ref|NP_615315.1| - 0.034 13.9 0.1 0.06 13.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII HTH_45 PF14947.1 gi|20089240|ref|NP_615315.1| - 0.034 13.9 0.0 0.089 12.6 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|20089240|ref|NP_615315.1| - 0.06 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3223 PF11523.3 gi|20089240|ref|NP_615315.1| - 0.094 13.0 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3223) Rrf2 PF02082.15 gi|20089240|ref|NP_615315.1| - 0.12 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4430 PF14478.1 gi|20089240|ref|NP_615315.1| - 0.16 12.0 0.4 0.45 10.5 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) DUF2162 PF09930.4 gi|20089241|ref|NP_615316.1| - 2.8e-79 265.4 17.7 3.1e-79 265.2 12.3 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) PhaG_MnhG_YufB PF03334.9 gi|20089241|ref|NP_615316.1| - 0.033 14.2 0.8 0.033 14.2 0.6 4.1 1 1 3 4 4 4 0 Na+/H+ antiporter subunit ABC2_membrane_5 PF13346.1 gi|20089241|ref|NP_615316.1| - 1.1 8.4 21.5 2 7.6 5.0 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein MotA_ExbB PF01618.11 gi|20089242|ref|NP_615317.1| - 1.3e-12 47.5 0.2 1.8e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|20089242|ref|NP_615317.1| - 0.006 16.1 3.7 0.0063 16.0 1.7 1.6 1 1 1 2 2 2 1 VIT family DUF3169 PF11368.3 gi|20089242|ref|NP_615317.1| - 1.3 8.1 5.8 1 8.4 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3169) DUF2149 PF09919.4 gi|20089243|ref|NP_615318.1| - 8.7e-35 118.6 0.2 1.1e-34 118.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) CobN-Mg_chel PF02514.11 gi|20089244|ref|NP_615319.1| - 0 1262.1 13.1 0 1261.7 1.8 3.1 3 1 1 4 4 4 2 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.11 gi|20089246|ref|NP_615321.1| - 0 1270.6 3.9 0 1263.8 0.1 2.4 3 0 0 3 3 3 2 CobN/Magnesium Chelatase Lipid_bd PF12888.2 gi|20089246|ref|NP_615321.1| - 0.0026 17.5 0.2 2 8.2 0.0 2.8 2 0 0 2 2 2 2 Lipid-binding putative hydrolase Arc_trans_TRASH PF08394.5 gi|20089246|ref|NP_615321.1| - 0.32 11.1 3.0 22 5.2 0.0 3.3 3 0 0 3 3 3 0 Archaeal TRASH domain MULE PF10551.4 gi|20089248|ref|NP_615323.1| - 4.9e-11 42.6 0.0 1.1e-10 41.5 0.0 1.6 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.1 gi|20089248|ref|NP_615323.1| - 0.0025 17.7 0.2 0.004 17.1 0.1 1.4 1 0 0 1 1 1 1 DDE domain YdjO PF14169.1 gi|20089248|ref|NP_615323.1| - 0.078 12.4 0.1 0.25 10.8 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO BDV_P24 PF06595.6 gi|20089248|ref|NP_615323.1| - 0.091 12.5 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Borna disease virus P24 protein TF_Zn_Ribbon PF08271.7 gi|20089248|ref|NP_615323.1| - 0.12 11.7 2.8 0.83 9.0 0.4 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|20089248|ref|NP_615323.1| - 0.13 11.9 2.6 1.1 8.9 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.1 gi|20089248|ref|NP_615323.1| - 0.14 11.3 0.2 0.14 11.3 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|20089248|ref|NP_615323.1| - 0.15 12.3 2.4 0.45 10.8 1.7 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Brix PF04427.13 gi|20089248|ref|NP_615323.1| - 3.8 7.1 7.1 7.7 6.1 0.5 2.5 1 1 1 2 2 2 0 Brix domain rve PF00665.21 gi|20089249|ref|NP_615324.1| - 8.6e-14 51.6 0.0 1.9e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089249|ref|NP_615324.1| - 4.9e-06 25.9 0.1 0.00011 21.5 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20089249|ref|NP_615324.1| - 6.7e-05 22.9 0.0 0.00015 21.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20089249|ref|NP_615324.1| - 9e-05 21.9 0.2 0.00022 20.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20089249|ref|NP_615324.1| - 0.028 14.4 0.2 0.06 13.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20089249|ref|NP_615324.1| - 0.082 12.4 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal MMPL PF03176.10 gi|20089250|ref|NP_615325.1| - 1.6e-25 89.4 4.9 2.7e-25 88.7 3.4 1.2 1 0 0 1 1 1 1 MMPL family SecD_SecF PF02355.11 gi|20089250|ref|NP_615325.1| - 8.9e-10 38.0 7.2 8.9e-10 38.0 5.0 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sterol-sensing PF12349.3 gi|20089250|ref|NP_615325.1| - 1.5e-07 30.9 7.1 3.3e-07 29.8 4.9 1.6 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|20089250|ref|NP_615325.1| - 3.6e-06 24.7 10.8 3.6e-06 24.7 7.5 1.8 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family Patched PF02460.13 gi|20089250|ref|NP_615325.1| - 0.0073 14.2 15.6 0.1 10.4 10.8 2.0 1 1 0 1 1 1 1 Patched family RNase_PH_C PF03725.10 gi|20089250|ref|NP_615325.1| - 0.039 13.9 0.1 1 9.3 0.0 2.5 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 TetR_C_5 PF08360.6 gi|20089251|ref|NP_615326.1| - 0.007 16.3 0.1 0.008 16.1 0.0 1.1 1 0 0 1 1 1 1 QacR-like protein, C-terminal region TetR_N PF00440.18 gi|20089252|ref|NP_615327.1| - 4.7e-18 64.5 0.1 6.6e-18 64.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF1724 PF08350.5 gi|20089254|ref|NP_615329.1| - 1.4e-21 75.7 0.0 2e-20 72.0 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) TSC22 PF01166.13 gi|20089254|ref|NP_615329.1| - 0.075 13.0 1.9 0.095 12.6 0.0 2.1 3 0 0 3 3 3 0 TSC-22/dip/bun family TrmB PF01978.14 gi|20089256|ref|NP_615331.1| - 4.4e-27 93.5 0.1 5.9e-27 93.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|20089256|ref|NP_615331.1| - 0.00016 21.3 0.0 0.073 12.8 0.0 2.2 1 1 1 2 2 2 2 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|20089256|ref|NP_615331.1| - 0.00022 20.7 0.0 0.00057 19.4 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|20089256|ref|NP_615331.1| - 0.00024 20.4 0.0 0.0007 18.9 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|20089256|ref|NP_615331.1| - 0.00025 21.1 0.0 0.00032 20.7 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor Rrf2 PF02082.15 gi|20089256|ref|NP_615331.1| - 0.00044 20.3 0.0 0.0011 19.0 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator MarR PF01047.17 gi|20089256|ref|NP_615331.1| - 0.00083 19.0 0.0 0.0036 16.9 0.0 2.1 2 1 1 3 3 3 1 MarR family MarR_2 PF12802.2 gi|20089256|ref|NP_615331.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.5 1 1 0 1 1 1 1 MarR family GntR PF00392.16 gi|20089256|ref|NP_615331.1| - 0.0022 17.3 0.0 0.0048 16.3 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|20089256|ref|NP_615331.1| - 0.004 17.1 0.0 0.0084 16.0 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20089256|ref|NP_615331.1| - 0.01 15.9 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|20089256|ref|NP_615331.1| - 0.025 14.1 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_34 PF13601.1 gi|20089256|ref|NP_615331.1| - 0.042 13.8 0.1 0.18 11.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|20089256|ref|NP_615331.1| - 0.069 13.4 0.0 0.26 11.6 0.0 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|20089256|ref|NP_615331.1| - 0.071 13.2 0.1 0.39 10.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_6 PF01418.12 gi|20089256|ref|NP_615331.1| - 0.083 12.6 0.1 0.21 11.3 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_5 PF01022.15 gi|20089256|ref|NP_615331.1| - 0.088 12.4 0.1 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family UBA_3 PF09288.5 gi|20089256|ref|NP_615331.1| - 0.12 11.9 0.1 2.3 7.8 0.0 2.2 1 1 0 2 2 2 0 Fungal ubiquitin-associated domain Lactamase_B_2 PF12706.2 gi|20089257|ref|NP_615332.1| - 2.7e-34 118.4 0.1 3.6e-34 118.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|20089257|ref|NP_615332.1| - 3.4e-15 56.1 0.1 5.4e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20089257|ref|NP_615332.1| - 0.00073 19.2 2.3 0.002 17.8 1.2 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Flavodoxin_3 PF12641.2 gi|20089258|ref|NP_615333.1| - 4.2e-14 52.2 0.7 9.9e-11 41.3 0.1 2.1 2 0 0 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|20089258|ref|NP_615333.1| - 5.5e-12 45.8 0.1 7.4e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|20089258|ref|NP_615333.1| - 0.002 17.5 0.4 0.046 13.0 0.1 2.1 1 1 1 2 2 2 1 Flavodoxin UDPG_MGDP_dh_N PF03721.9 gi|20089258|ref|NP_615333.1| - 0.039 13.3 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Abhydrolase_5 PF12695.2 gi|20089259|ref|NP_615334.1| - 2.8e-10 40.1 0.0 5.9e-10 39.0 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|20089259|ref|NP_615334.1| - 1.9e-09 37.7 0.0 4.5e-09 36.5 0.0 1.5 1 1 1 2 2 2 1 Alpha/beta hydrolase family DUF1100 PF06500.6 gi|20089259|ref|NP_615334.1| - 2.9e-09 36.0 0.0 4.1e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) AXE1 PF05448.7 gi|20089259|ref|NP_615334.1| - 0.00046 18.7 0.0 0.0014 17.1 0.0 1.8 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.16 gi|20089259|ref|NP_615334.1| - 0.00055 19.2 0.0 0.044 12.9 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|20089259|ref|NP_615334.1| - 0.03 14.0 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF3791 PF12668.2 gi|20089259|ref|NP_615334.1| - 0.034 13.7 0.0 0.075 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) Peptidase_S15 PF02129.13 gi|20089259|ref|NP_615334.1| - 0.051 12.9 0.0 2.3 7.5 0.0 2.4 1 1 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Flavodoxin_3 PF12641.2 gi|20089260|ref|NP_615335.1| - 2.9e-11 43.0 1.1 4.8e-08 32.5 0.2 2.1 2 0 0 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|20089260|ref|NP_615335.1| - 5.7e-11 42.5 0.1 8e-11 42.1 0.1 1.2 1 0 0 1 1 1 1 Flavodoxin domain UDPG_MGDP_dh_N PF03721.9 gi|20089260|ref|NP_615335.1| - 0.029 13.7 0.0 0.061 12.6 0.0 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Flavodoxin_4 PF12682.2 gi|20089260|ref|NP_615335.1| - 0.13 11.6 0.2 0.54 9.5 0.1 1.8 1 1 1 2 2 2 0 Flavodoxin TetR_N PF00440.18 gi|20089261|ref|NP_615336.1| - 5.1e-17 61.2 0.1 1.7e-16 59.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family DNase_II PF03265.10 gi|20089261|ref|NP_615336.1| - 0.033 13.1 0.2 0.044 12.7 0.1 1.1 1 0 0 1 1 1 0 Deoxyribonuclease II AAA_12 PF13087.1 gi|20089261|ref|NP_615336.1| - 0.038 13.3 0.5 0.053 12.8 0.4 1.2 1 0 0 1 1 1 0 AAA domain Hepatitis_core PF00906.15 gi|20089261|ref|NP_615336.1| - 0.061 12.9 0.0 0.084 12.5 0.0 1.1 1 0 0 1 1 1 0 Hepatitis core antigen HTH_7 PF02796.10 gi|20089261|ref|NP_615336.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Lactamase_B_2 PF12706.2 gi|20089262|ref|NP_615337.1| - 1.3e-34 119.4 0.4 1.9e-34 118.9 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|20089262|ref|NP_615337.1| - 4e-15 55.8 0.1 7e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20089262|ref|NP_615337.1| - 2.6e-05 23.9 1.3 0.00016 21.3 0.7 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF318 PF03773.8 gi|20089263|ref|NP_615338.1| - 5.9e-32 110.8 18.8 5.2e-31 107.7 13.1 1.9 1 1 0 1 1 1 1 Predicted permease DUF202 PF02656.10 gi|20089263|ref|NP_615338.1| - 0.18 12.0 4.1 5.8 7.2 1.4 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF202) PDR_CDR PF06422.7 gi|20089263|ref|NP_615338.1| - 9 6.0 7.8 5 6.8 0.2 3.1 3 0 0 3 3 3 0 CDR ABC transporter DUF362 PF04015.7 gi|20089264|ref|NP_615339.1| - 2.9e-21 75.9 0.1 4.7e-21 75.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DUF2088 PF09861.4 gi|20089264|ref|NP_615339.1| - 0.11 11.5 0.3 0.18 10.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) TetR_N PF00440.18 gi|20089265|ref|NP_615340.1| - 1.3e-17 63.1 0.0 2.1e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF111 PF01969.12 gi|20089266|ref|NP_615341.1| - 3.8e-20 72.0 0.0 4.5e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 AA_kinase PF00696.23 gi|20089269|ref|NP_615344.1| - 3.6e-28 98.7 1.2 4.4e-28 98.4 0.8 1.1 1 0 0 1 1 1 1 Amino acid kinase family MacB_PCD PF12704.2 gi|20089271|ref|NP_615346.1| - 5.6e-35 121.0 0.5 5.6e-35 121.0 0.3 3.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20089271|ref|NP_615346.1| - 5.2e-23 81.1 16.1 7.1e-23 80.6 9.1 2.3 2 0 0 2 2 2 1 FtsX-like permease family Plasmid_stabil PF05016.9 gi|20089273|ref|NP_615348.1| - 4.8e-12 46.1 1.0 5.5e-12 45.9 0.7 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|20089273|ref|NP_615348.1| - 0.0039 17.1 0.1 0.0053 16.7 0.0 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) ABC_tran PF00005.22 gi|20089274|ref|NP_615349.1| - 3.1e-33 114.9 0.0 4.6e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089274|ref|NP_615349.1| - 1.9e-10 41.2 0.1 1.9e-05 24.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20089274|ref|NP_615349.1| - 3.5e-09 36.2 0.0 1.7e-05 24.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20089274|ref|NP_615349.1| - 0.00011 21.6 0.1 0.0002 20.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20089274|ref|NP_615349.1| - 0.00056 19.9 1.0 0.004 17.1 0.7 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|20089274|ref|NP_615349.1| - 0.00098 18.8 0.5 0.17 11.6 0.1 2.6 3 0 0 3 3 2 1 Part of AAA domain AAA_22 PF13401.1 gi|20089274|ref|NP_615349.1| - 0.0014 18.7 0.5 0.0074 16.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20089274|ref|NP_615349.1| - 0.0034 16.8 0.3 0.0089 15.4 0.0 1.7 2 1 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|20089274|ref|NP_615349.1| - 0.0055 16.5 0.4 0.025 14.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|20089274|ref|NP_615349.1| - 0.0056 16.5 0.1 0.065 13.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|20089274|ref|NP_615349.1| - 0.0061 15.7 0.0 0.013 14.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|20089274|ref|NP_615349.1| - 0.0088 15.6 0.2 0.043 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20089274|ref|NP_615349.1| - 0.0091 15.4 0.2 0.027 13.8 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20089274|ref|NP_615349.1| - 0.012 16.3 1.0 0.025 15.3 0.6 1.7 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|20089274|ref|NP_615349.1| - 0.021 14.2 0.1 0.96 8.8 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|20089274|ref|NP_615349.1| - 0.024 14.9 2.3 0.3 11.3 1.6 2.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|20089274|ref|NP_615349.1| - 0.025 13.4 0.7 1.2 7.9 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.12 gi|20089274|ref|NP_615349.1| - 0.037 13.4 0.1 0.25 10.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|20089274|ref|NP_615349.1| - 0.057 12.3 0.0 0.084 11.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein KaiC PF06745.8 gi|20089274|ref|NP_615349.1| - 0.058 12.4 0.6 2.7 7.0 0.0 2.1 2 0 0 2 2 2 0 KaiC Mg_chelatase PF01078.16 gi|20089274|ref|NP_615349.1| - 0.06 12.4 0.1 0.13 11.4 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|20089274|ref|NP_615349.1| - 0.074 12.7 0.2 0.52 9.9 0.2 2.1 1 1 0 1 1 1 0 Archaeal ATPase AAA_15 PF13175.1 gi|20089274|ref|NP_615349.1| - 0.082 11.9 0.0 4.5 6.2 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_PrkA PF08298.6 gi|20089274|ref|NP_615349.1| - 0.087 11.4 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain NTPase_1 PF03266.10 gi|20089274|ref|NP_615349.1| - 0.099 12.3 0.2 3 7.5 0.0 2.2 2 0 0 2 2 2 0 NTPase ATP_bind_1 PF03029.12 gi|20089274|ref|NP_615349.1| - 0.12 11.9 0.2 2.3 7.6 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|20089274|ref|NP_615349.1| - 0.13 11.9 0.6 0.29 10.7 0.1 1.8 2 1 0 2 2 2 0 NACHT domain tRNA_int_end_N2 PF12928.2 gi|20089274|ref|NP_615349.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term AAA_23 PF13476.1 gi|20089274|ref|NP_615349.1| - 0.15 12.3 1.5 0.2 11.9 0.1 1.7 2 1 0 2 2 2 0 AAA domain Acetyltransf_1 PF00583.19 gi|20089275|ref|NP_615350.1| - 3.9e-15 55.6 0.0 5.3e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20089275|ref|NP_615350.1| - 5.8e-11 42.4 0.1 9.1e-11 41.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20089275|ref|NP_615350.1| - 7.1e-08 32.5 1.0 1.1e-07 31.9 0.7 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089275|ref|NP_615350.1| - 3.4e-07 30.4 0.0 4e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20089275|ref|NP_615350.1| - 9.9e-06 25.2 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|20089275|ref|NP_615350.1| - 3.4e-05 23.6 0.0 5.9e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|20089275|ref|NP_615350.1| - 0.00016 21.8 0.1 0.00019 21.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20089275|ref|NP_615350.1| - 0.00053 19.9 0.0 0.00083 19.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089275|ref|NP_615350.1| - 0.0023 17.7 0.0 0.003 17.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|20089275|ref|NP_615350.1| - 0.034 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|20089275|ref|NP_615350.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain IF-2B PF01008.12 gi|20089276|ref|NP_615351.1| - 1.2e-83 280.4 1.2 1.3e-83 280.2 0.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1724 PF08350.5 gi|20089277|ref|NP_615352.1| - 8.7e-26 89.2 0.0 1.6e-25 88.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20089277|ref|NP_615352.1| - 0.0001 21.8 0.0 0.00019 21.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20089277|ref|NP_615352.1| - 0.00024 20.6 0.1 0.0058 16.2 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|20089277|ref|NP_615352.1| - 0.0032 17.7 0.0 0.011 16.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|20089277|ref|NP_615352.1| - 0.093 12.3 0.0 0.29 10.8 0.0 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix FmdE PF02663.9 gi|20089278|ref|NP_615353.1| - 9.8e-40 135.4 0.0 1.3e-39 135.0 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|20089278|ref|NP_615353.1| - 4.3e-06 26.3 0.9 9.3e-06 25.2 0.6 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger UPF0066 PF01980.11 gi|20089279|ref|NP_615354.1| - 2.1e-33 114.8 0.0 2.6e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 CobN-Mg_chel PF02514.11 gi|20089280|ref|NP_615355.1| - 0 1164.4 0.0 0 1160.0 0.0 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase gerPA PF10676.4 gi|20089280|ref|NP_615355.1| - 0.12 12.1 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 Spore germination protein gerPA/gerPF CobN-Mg_chel PF02514.11 gi|20089281|ref|NP_615356.1| - 0 1287.8 0.2 0 1287.5 0.1 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.1 gi|20089281|ref|NP_615356.1| - 0.00018 21.5 0.0 0.00068 19.6 0.0 2.0 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|20089281|ref|NP_615356.1| - 0.0032 17.2 0.1 0.018 14.8 0.0 2.1 2 0 0 2 2 2 1 Cna protein B-type domain CobN-Mg_chel PF02514.11 gi|161484941|ref|NP_615357.2| - 0 1241.4 1.5 0 1239.8 0.8 1.7 2 0 0 2 2 2 1 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|161484941|ref|NP_615357.2| - 0.35 10.6 0.0 0.72 9.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) CobN-Mg_chel PF02514.11 gi|20089283|ref|NP_615358.1| - 0 1231.4 0.0 0 1231.0 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Zip PF02535.17 gi|20089284|ref|NP_615359.1| - 4.7e-28 98.1 24.8 4.7e-23 81.6 5.1 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|20089284|ref|NP_615359.1| - 0.00026 20.1 0.1 0.0039 16.2 0.1 2.3 1 1 0 1 1 1 1 E1-E2 ATPase MULE PF10551.4 gi|20089285|ref|NP_615360.1| - 6.6e-11 42.2 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20089285|ref|NP_615360.1| - 0.00059 19.1 2.3 0.0023 17.1 1.6 1.8 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20089285|ref|NP_615360.1| - 0.067 12.9 0.8 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20089285|ref|NP_615360.1| - 0.21 11.8 2.4 0.74 10.1 1.7 1.9 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.11 gi|20089285|ref|NP_615360.1| - 0.26 10.9 2.6 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|20089285|ref|NP_615360.1| - 0.27 10.5 2.8 1.3 8.4 0.4 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20089285|ref|NP_615360.1| - 0.29 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M3_N PF08439.5 gi|20089285|ref|NP_615360.1| - 2.2 8.4 6.7 0.31 11.1 1.0 2.4 3 0 0 3 3 3 0 Oligopeptidase F Cas_Csa5 PF09702.5 gi|20089286|ref|NP_615361.1| - 0.027 14.5 0.1 0.033 14.2 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) rve_2 PF13333.1 gi|20089286|ref|NP_615361.1| - 0.25 11.4 1.5 1.5 8.9 0.8 2.1 1 1 1 2 2 2 0 Integrase core domain YqzM PF14141.1 gi|20089288|ref|NP_615363.1| - 4.5 7.1 7.9 7.3 6.4 0.9 2.4 2 0 0 2 2 2 0 YqzM-like protein CbiQ PF02361.11 gi|20089290|ref|NP_615365.1| - 7.1e-27 94.4 6.0 9.2e-27 94.0 4.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|20089291|ref|NP_615366.1| - 5.5e-32 110.9 0.0 1.1e-31 109.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089291|ref|NP_615366.1| - 1e-12 48.6 1.3 3.5e-06 27.2 0.0 2.5 2 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|20089291|ref|NP_615366.1| - 4.8e-07 29.2 0.0 1.1e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|20089291|ref|NP_615366.1| - 1.6e-05 23.6 0.1 0.0052 15.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20089291|ref|NP_615366.1| - 5.1e-05 22.5 0.1 0.0049 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|20089291|ref|NP_615366.1| - 9.6e-05 21.8 0.2 0.00019 20.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20089291|ref|NP_615366.1| - 0.0014 19.0 0.1 0.0025 18.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|20089291|ref|NP_615366.1| - 0.021 14.5 0.1 0.067 12.8 0.0 2.0 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_18 PF13238.1 gi|20089291|ref|NP_615366.1| - 0.029 14.6 0.2 0.3 11.3 0.1 2.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|20089291|ref|NP_615366.1| - 0.03 13.5 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|20089291|ref|NP_615366.1| - 0.099 12.3 0.2 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|20089291|ref|NP_615366.1| - 0.14 13.0 0.4 0.42 11.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain PhnA_Zn_Ribbon PF08274.7 gi|20089292|ref|NP_615367.1| - 2.1e-05 24.1 6.6 0.027 14.2 0.4 3.1 2 0 0 2 2 2 2 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|20089292|ref|NP_615367.1| - 0.00012 21.5 6.0 0.059 12.8 0.1 3.7 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Desulfoferrod_N PF06397.7 gi|20089292|ref|NP_615367.1| - 0.0026 17.1 30.8 0.06 12.7 1.1 4.4 3 1 0 3 3 3 2 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|20089292|ref|NP_615367.1| - 0.0032 16.8 4.0 0.93 9.0 0.1 3.1 3 0 0 3 3 3 2 zinc-ribbon domain FYDLN_acid PF09538.5 gi|20089292|ref|NP_615367.1| - 0.056 14.0 1.2 1.3 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Trm112p PF03966.11 gi|20089292|ref|NP_615367.1| - 6.4 7.2 9.1 13 6.1 0.1 2.9 2 1 1 3 3 3 0 Trm112p-like protein DrsE PF02635.10 gi|20089293|ref|NP_615368.1| - 1.6e-08 34.6 0.0 1.8e-08 34.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|20089293|ref|NP_615368.1| - 3.6e-08 33.3 0.0 3.9e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family rve PF00665.21 gi|20089294|ref|NP_615369.1| - 9.7e-14 51.5 0.0 2.1e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089294|ref|NP_615369.1| - 5.6e-06 25.7 0.1 0.00012 21.4 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20089294|ref|NP_615369.1| - 9e-05 22.5 0.0 0.0002 21.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20089294|ref|NP_615369.1| - 9.8e-05 21.8 0.2 0.00024 20.6 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20089294|ref|NP_615369.1| - 0.031 14.2 0.2 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20089294|ref|NP_615369.1| - 0.089 12.3 0.1 0.28 10.7 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal MMPL PF03176.10 gi|20089295|ref|NP_615370.1| - 6.6e-32 110.5 4.4 8.1e-32 110.2 3.0 1.1 1 0 0 1 1 1 1 MMPL family Patched PF02460.13 gi|20089295|ref|NP_615370.1| - 4.1e-09 34.9 9.3 6.1e-09 34.3 6.4 1.2 1 1 0 1 1 1 1 Patched family Sterol-sensing PF12349.3 gi|20089295|ref|NP_615370.1| - 4.8e-09 35.8 2.1 4.8e-09 35.8 1.5 1.5 1 1 1 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation DUF2614 PF11023.3 gi|20089295|ref|NP_615370.1| - 2.4 7.9 6.9 0.21 11.3 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2614) DUF4064 PF13273.1 gi|20089296|ref|NP_615371.1| - 0.16 12.1 1.8 0.17 12.0 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) Cupin_2 PF07883.6 gi|20089297|ref|NP_615372.1| - 9.6e-11 41.0 0.8 9.6e-11 41.0 0.6 1.7 3 0 0 3 3 3 1 Cupin domain AraC_binding PF02311.14 gi|20089297|ref|NP_615372.1| - 5.4e-07 29.3 0.6 8.3e-07 28.7 0.4 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|20089297|ref|NP_615372.1| - 0.0048 16.3 0.0 0.0069 15.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|20089297|ref|NP_615372.1| - 0.016 14.8 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|20089297|ref|NP_615372.1| - 0.026 13.9 0.1 0.069 12.5 0.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF861) Cupin_7 PF12973.2 gi|20089297|ref|NP_615372.1| - 0.032 14.0 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain ADH_N PF08240.7 gi|20089298|ref|NP_615373.1| - 5.3e-31 106.6 6.2 5.3e-31 106.6 4.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|20089298|ref|NP_615373.1| - 1.9e-16 59.7 0.0 3e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.10 gi|20089298|ref|NP_615373.1| - 0.0058 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|20089298|ref|NP_615373.1| - 0.014 14.6 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldo_ket_red PF00248.16 gi|20089299|ref|NP_615374.1| - 8.4e-36 123.2 0.0 9.2e-35 119.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|20089299|ref|NP_615374.1| - 7.1e-10 39.0 7.9 2.1e-09 37.5 5.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089299|ref|NP_615374.1| - 1.6e-07 31.2 7.4 3.5e-07 30.1 5.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089299|ref|NP_615374.1| - 2.6e-07 30.9 5.0 0.0019 18.5 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089299|ref|NP_615374.1| - 2.3e-06 27.7 7.8 6e-06 26.4 5.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089299|ref|NP_615374.1| - 9.7e-05 22.0 11.3 0.00041 20.1 8.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089299|ref|NP_615374.1| - 0.00048 19.5 2.7 0.00048 19.5 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20089299|ref|NP_615374.1| - 0.011 15.6 2.6 0.011 15.6 1.8 2.5 2 0 0 2 2 1 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089299|ref|NP_615374.1| - 0.014 15.7 13.5 0.43 11.0 9.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089299|ref|NP_615374.1| - 0.039 13.8 2.0 0.039 13.8 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20089299|ref|NP_615374.1| - 0.047 14.0 3.5 0.047 14.0 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089299|ref|NP_615374.1| - 0.39 10.5 11.8 2.5 8.0 8.2 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|20089299|ref|NP_615374.1| - 0.41 10.3 9.6 0.056 13.0 0.9 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|20089299|ref|NP_615374.1| - 0.71 10.6 12.4 5 7.9 8.9 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain FMN_red PF03358.10 gi|20089300|ref|NP_615375.1| - 2.3e-22 79.1 0.0 2.7e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20089300|ref|NP_615375.1| - 0.00095 18.7 0.0 0.0013 18.3 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_4 PF12682.2 gi|20089301|ref|NP_615376.1| - 3.6e-57 192.0 0.0 4.1e-57 191.8 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|20089301|ref|NP_615376.1| - 0.00015 21.2 0.0 0.098 12.0 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|20089301|ref|NP_615376.1| - 0.058 12.9 0.0 0.071 12.6 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold CMD PF02627.15 gi|20089302|ref|NP_615377.1| - 9.7e-27 92.6 0.0 4.3e-13 48.9 0.0 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family Hexapep_2 PF14602.1 gi|20089303|ref|NP_615378.1| - 7.2e-12 44.6 0.8 5.7e-07 28.9 0.0 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.19 gi|20089303|ref|NP_615378.1| - 8.5e-12 44.0 7.8 1.3e-08 33.9 0.4 3.4 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) DUF4393 PF14337.1 gi|20089303|ref|NP_615378.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) DUF3737 PF12541.3 gi|20089304|ref|NP_615379.1| - 1.3e-25 89.9 0.1 4.5e-25 88.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3737) DUF3785 PF12653.2 gi|20089304|ref|NP_615379.1| - 0.067 13.0 0.3 0.13 12.0 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3785) DUF3737 PF12541.3 gi|20089305|ref|NP_615380.1| - 1.9e-82 276.3 2.8 2.2e-82 276.1 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3737) Beta_helix PF13229.1 gi|20089305|ref|NP_615380.1| - 0.0048 16.6 3.2 0.11 12.2 2.2 2.5 1 1 0 1 1 1 1 Right handed beta helix region Cyclophil_like PF04126.8 gi|20089306|ref|NP_615381.1| - 1.9e-10 40.3 0.0 5e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 Cyclophilin-like HxlR PF01638.12 gi|20089307|ref|NP_615382.1| - 8.6e-20 70.1 0.0 1e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|20089307|ref|NP_615382.1| - 0.0026 17.0 0.1 0.0055 16.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|20089307|ref|NP_615382.1| - 0.0032 17.2 0.1 0.0052 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.5 gi|20089307|ref|NP_615382.1| - 0.014 15.0 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF505 PF04458.7 gi|20089307|ref|NP_615382.1| - 0.032 12.3 0.0 0.035 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) PadR PF03551.9 gi|20089307|ref|NP_615382.1| - 0.037 13.7 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PapB PF03333.8 gi|20089307|ref|NP_615382.1| - 0.039 13.7 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein LexA_DNA_bind PF01726.11 gi|20089307|ref|NP_615382.1| - 0.044 13.3 0.1 0.078 12.5 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_34 PF13601.1 gi|20089307|ref|NP_615382.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain adh_short PF00106.20 gi|20089308|ref|NP_615383.1| - 2.6e-35 121.7 0.4 3.3e-35 121.4 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|20089308|ref|NP_615383.1| - 2e-30 106.3 0.0 2.6e-30 105.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|20089308|ref|NP_615383.1| - 9.7e-15 54.6 0.1 1.5e-14 54.0 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|20089308|ref|NP_615383.1| - 0.0008 18.9 0.0 0.00098 18.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|20089308|ref|NP_615383.1| - 0.017 14.9 1.4 0.017 14.9 1.0 2.3 2 1 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Cupin_2 PF07883.6 gi|20089309|ref|NP_615384.1| - 3.1e-10 39.4 1.5 5.4e-10 38.6 0.8 1.6 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.14 gi|20089309|ref|NP_615384.1| - 6.3e-06 25.9 0.6 8.2e-06 25.5 0.4 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|20089309|ref|NP_615384.1| - 0.0036 16.7 0.0 0.0045 16.4 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|20089309|ref|NP_615384.1| - 0.064 13.1 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 ChrR Cupin-like domain ADH_N PF08240.7 gi|20089310|ref|NP_615385.1| - 2.6e-29 101.1 0.3 5e-29 100.2 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|20089310|ref|NP_615385.1| - 1.5e-09 37.5 0.0 3.9e-07 29.6 0.0 2.9 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|20089310|ref|NP_615385.1| - 8.9e-09 34.8 2.8 8.9e-09 34.8 1.9 2.2 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated HI0933_like PF03486.9 gi|20089310|ref|NP_615385.1| - 1.4e-05 23.7 0.0 1.9e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|20089310|ref|NP_615385.1| - 0.0022 17.5 0.2 0.014 14.9 0.1 2.2 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|20089310|ref|NP_615385.1| - 0.0043 17.1 0.1 0.066 13.3 0.0 2.3 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|20089310|ref|NP_615385.1| - 0.038 14.2 0.0 0.067 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|20089310|ref|NP_615385.1| - 0.071 12.4 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_18 PF12847.2 gi|20089310|ref|NP_615385.1| - 0.11 13.1 0.0 0.58 10.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain ETF PF01012.16 gi|20089310|ref|NP_615385.1| - 0.13 12.0 0.1 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain FMN_red PF03358.10 gi|20089311|ref|NP_615386.1| - 1.5e-22 79.7 0.0 1.9e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20089311|ref|NP_615386.1| - 1.5e-13 50.6 0.0 2e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Abhydrolase_5 PF12695.2 gi|20089312|ref|NP_615387.1| - 3.7e-11 42.9 0.0 7.9e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|20089312|ref|NP_615387.1| - 1.9e-06 27.9 0.0 2.6e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|20089312|ref|NP_615387.1| - 1.1e-05 25.0 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|20089312|ref|NP_615387.1| - 3e-05 23.3 0.2 0.00017 20.9 0.1 2.1 2 1 0 2 2 2 1 Dienelactone hydrolase family AXE1 PF05448.7 gi|20089312|ref|NP_615387.1| - 0.0051 15.3 0.0 0.0093 14.4 0.0 1.4 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.16 gi|20089312|ref|NP_615387.1| - 0.019 14.1 0.1 0.054 12.7 0.0 1.8 2 0 0 2 2 2 0 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|20089312|ref|NP_615387.1| - 0.077 12.8 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase DUF2202 PF09968.4 gi|20089313|ref|NP_615388.1| - 8.2e-58 194.6 0.5 1e-57 194.3 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Ferritin_2 PF13668.1 gi|20089313|ref|NP_615388.1| - 0.0052 16.7 0.0 0.0079 16.1 0.0 1.4 1 1 0 1 1 1 1 Ferritin-like domain Lipase_bact_N PF12262.3 gi|20089313|ref|NP_615388.1| - 0.037 13.2 0.0 0.075 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial virulence factor lipase N-terminal Rubrerythrin PF02915.12 gi|20089313|ref|NP_615388.1| - 0.065 13.5 0.0 0.091 13.0 0.0 1.4 1 0 0 1 1 1 0 Rubrerythrin Aldo_ket_red PF00248.16 gi|20089314|ref|NP_615389.1| - 6.1e-46 156.5 0.0 7.4e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|20089314|ref|NP_615389.1| - 5.9e-12 45.7 6.6 1.3e-11 44.6 4.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089314|ref|NP_615389.1| - 6.3e-10 39.1 6.9 1.1e-09 38.3 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089314|ref|NP_615389.1| - 3.1e-09 37.1 1.7 3.3e-05 24.2 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089314|ref|NP_615389.1| - 3.6e-08 33.2 6.5 7.2e-08 32.3 4.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089314|ref|NP_615389.1| - 3.2e-05 23.6 8.3 0.00014 21.5 6.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|20089314|ref|NP_615389.1| - 5e-05 22.8 1.9 0.00075 19.1 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|20089314|ref|NP_615389.1| - 0.00033 21.3 4.4 0.1 13.3 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20089314|ref|NP_615389.1| - 0.0007 19.3 6.1 0.31 10.9 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089314|ref|NP_615389.1| - 0.0038 16.7 1.5 0.0038 16.7 1.0 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain NPR1_like_C PF12313.3 gi|20089314|ref|NP_615389.1| - 0.059 12.7 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 NPR1/NIM1 like defence protein C terminal Fer4_2 PF12797.2 gi|20089314|ref|NP_615389.1| - 0.15 12.0 12.9 0.36 10.8 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20089314|ref|NP_615389.1| - 0.35 11.3 13.9 1.2 9.6 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089314|ref|NP_615389.1| - 0.41 11.0 13.9 0.79 10.1 2.6 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20089314|ref|NP_615389.1| - 7.8 7.1 8.4 0.72 10.4 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20089314|ref|NP_615389.1| - 8.4 6.8 8.1 0.24 11.7 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20089314|ref|NP_615389.1| - 9.1 7.1 15.9 0.57 10.8 3.4 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain T_Ag_DNA_bind PF02217.11 gi|20089316|ref|NP_615391.1| - 0.063 13.6 0.1 0.075 13.4 0.1 1.2 1 0 0 1 1 1 0 Origin of replication binding protein NHL PF01436.16 gi|20089317|ref|NP_615392.1| - 6.3e-18 63.7 0.3 4.1e-08 32.7 0.0 2.5 2 0 0 2 2 2 2 NHL repeat SBBP PF06739.6 gi|20089317|ref|NP_615392.1| - 6.4e-11 41.8 1.2 4.9e-05 23.0 0.2 2.5 2 0 0 2 2 2 2 Beta-propeller repeat SGL PF08450.7 gi|20089317|ref|NP_615392.1| - 5.1e-06 26.0 0.0 0.0021 17.4 0.0 2.1 1 1 1 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region Reg_prop PF07494.6 gi|20089317|ref|NP_615392.1| - 0.081 12.9 0.1 24 5.4 0.0 2.6 2 0 0 2 2 2 0 Two component regulator propeller DUF839 PF05787.8 gi|20089317|ref|NP_615392.1| - 0.09 11.7 0.1 1.4 7.7 0.0 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF839) T_cell_tran_alt PF15128.1 gi|20089317|ref|NP_615392.1| - 0.09 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 T-cell leukemia translocation-altered DUF4144 PF13642.1 gi|20089317|ref|NP_615392.1| - 0.14 12.5 0.0 1.2 9.4 0.0 2.0 1 1 1 2 2 2 0 protein structure with unknown function DUF4179 PF13786.1 gi|20089317|ref|NP_615392.1| - 0.42 10.8 0.0 0.42 10.8 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) GCR1_C PF12550.3 gi|20089318|ref|NP_615393.1| - 0.046 13.5 0.1 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes Aldo_ket_red PF00248.16 gi|20089319|ref|NP_615394.1| - 1.7e-44 151.7 0.0 2.3e-44 151.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|20089319|ref|NP_615394.1| - 7.5e-12 45.4 6.3 1.7e-11 44.3 4.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089319|ref|NP_615394.1| - 4.3e-10 39.6 6.7 7.9e-10 38.8 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089319|ref|NP_615394.1| - 6.5e-08 32.8 3.6 0.00013 22.3 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089319|ref|NP_615394.1| - 6.6e-08 32.4 6.7 1.4e-07 31.4 4.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|20089319|ref|NP_615394.1| - 0.00012 21.6 4.7 0.00038 20.0 0.2 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|20089319|ref|NP_615394.1| - 0.0006 20.5 4.4 0.087 13.5 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20089319|ref|NP_615394.1| - 0.00095 18.9 12.9 0.014 15.1 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089319|ref|NP_615394.1| - 0.0011 18.8 7.3 0.25 11.2 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089319|ref|NP_615394.1| - 0.0014 19.0 6.1 0.049 14.0 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089319|ref|NP_615394.1| - 0.0048 16.4 1.8 0.0048 16.4 1.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20089319|ref|NP_615394.1| - 2.5 8.8 14.2 0.57 10.8 3.4 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20089319|ref|NP_615394.1| - 3.2 8.3 14.3 1.2 9.6 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089319|ref|NP_615394.1| - 5.2 7.1 15.0 0.64 10.0 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089319|ref|NP_615394.1| - 7.4 7.2 7.5 1.4 9.5 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain AIRC PF00731.15 gi|20089320|ref|NP_615395.1| - 1.8e-22 79.2 2.2 3.3e-22 78.3 1.5 1.4 1 0 0 1 1 1 1 AIR carboxylase DUF111 PF01969.12 gi|20089321|ref|NP_615396.1| - 2e-130 435.0 0.4 2.3e-130 434.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Semialdhyde_dhC PF02774.13 gi|20089322|ref|NP_615397.1| - 2.4e-36 125.3 0.0 3.9e-36 124.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|20089322|ref|NP_615397.1| - 2.8e-35 121.2 0.0 4.2e-35 120.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|20089322|ref|NP_615397.1| - 6.2e-05 23.4 0.1 0.00011 22.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|20089322|ref|NP_615397.1| - 0.0024 18.3 0.0 0.0048 17.4 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|20089322|ref|NP_615397.1| - 0.0082 16.0 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|20089322|ref|NP_615397.1| - 0.0093 15.9 0.1 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Fer4 PF00037.22 gi|20089323|ref|NP_615398.1| - 4.3e-18 64.0 18.2 2e-09 36.6 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089323|ref|NP_615398.1| - 6.3e-15 54.7 25.6 3.6e-10 39.4 9.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089323|ref|NP_615398.1| - 1.7e-12 47.4 12.9 2.3e-12 47.1 9.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089323|ref|NP_615398.1| - 1.2e-11 44.6 11.9 1.4e-11 44.4 8.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089323|ref|NP_615398.1| - 4.5e-11 42.1 16.0 3.7e-06 26.5 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089323|ref|NP_615398.1| - 4.8e-11 41.8 15.8 2.4e-06 27.1 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089323|ref|NP_615398.1| - 8.4e-10 39.2 12.8 1.6e-05 25.5 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20089323|ref|NP_615398.1| - 2.6e-09 36.7 14.0 6.2e-09 35.5 9.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20089323|ref|NP_615398.1| - 2.4e-08 33.7 6.1 2.6e-08 33.6 4.3 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089323|ref|NP_615398.1| - 7.9e-08 32.0 14.7 0.0009 19.3 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089323|ref|NP_615398.1| - 1.2e-07 31.9 13.6 9.9e-05 22.6 9.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089323|ref|NP_615398.1| - 2.4e-07 30.6 14.4 1.1e-06 28.5 10.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20089323|ref|NP_615398.1| - 2.8e-07 31.0 17.3 0.00015 22.2 2.6 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20089323|ref|NP_615398.1| - 1.8e-06 28.2 16.0 0.0054 17.0 4.4 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20089323|ref|NP_615398.1| - 2.5e-06 27.6 20.3 0.0038 17.6 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20089323|ref|NP_615398.1| - 0.00072 19.9 17.6 0.011 16.0 3.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain HTH_45 PF14947.1 gi|20089324|ref|NP_615399.1| - 0.0018 18.0 0.1 0.0028 17.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.11 gi|20089324|ref|NP_615399.1| - 0.054 13.5 0.1 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain cobW PF02492.14 gi|20089325|ref|NP_615400.1| - 9.1e-37 126.2 0.2 1.3e-36 125.7 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|20089325|ref|NP_615400.1| - 0.00038 20.1 0.1 0.00092 18.9 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|20089325|ref|NP_615400.1| - 0.0017 17.2 0.5 0.0086 14.8 0.2 1.9 2 0 0 2 2 2 1 ArgK protein SRP54 PF00448.17 gi|20089325|ref|NP_615400.1| - 0.0029 17.0 0.4 0.0066 15.9 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|20089325|ref|NP_615400.1| - 0.0041 17.4 0.3 0.022 15.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|20089325|ref|NP_615400.1| - 0.0052 16.2 0.1 0.01 15.3 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain Zeta_toxin PF06414.7 gi|20089325|ref|NP_615400.1| - 0.012 14.6 0.2 0.029 13.4 0.2 1.6 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.13 gi|20089325|ref|NP_615400.1| - 0.013 15.0 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.10 gi|20089325|ref|NP_615400.1| - 0.014 15.1 0.2 0.048 13.3 0.2 2.0 1 1 0 1 1 1 0 NTPase ABC_tran PF00005.22 gi|20089325|ref|NP_615400.1| - 0.036 14.3 0.0 0.15 12.3 0.0 2.1 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|20089325|ref|NP_615400.1| - 0.056 13.1 0.0 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Part of AAA domain KTI12 PF08433.5 gi|20089325|ref|NP_615400.1| - 0.086 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|20089325|ref|NP_615400.1| - 0.091 11.6 1.1 0.21 10.4 0.3 2.0 2 1 0 2 2 2 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|20089325|ref|NP_615400.1| - 0.093 11.3 2.6 0.13 10.8 0.5 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.1 gi|20089325|ref|NP_615400.1| - 0.095 12.2 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain HTH_45 PF14947.1 gi|20089326|ref|NP_615401.1| - 0.00043 20.0 0.0 0.00073 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|20089326|ref|NP_615401.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain DUF1628 PF07790.6 gi|20089327|ref|NP_615402.1| - 0.039 14.6 0.6 0.17 12.6 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) MORN_2 PF07661.8 gi|20089327|ref|NP_615402.1| - 0.13 12.3 0.0 19 5.7 0.0 2.8 1 1 1 2 2 2 0 MORN repeat variant Radical_SAM PF04055.16 gi|20089328|ref|NP_615403.1| - 1.3e-10 41.7 0.5 2.7e-10 40.6 0.4 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF4096 PF13340.1 gi|20089329|ref|NP_615404.1| - 4.5e-30 103.3 0.2 1.2e-29 101.9 0.1 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.1 gi|20089329|ref|NP_615404.1| - 1.5e-17 63.5 1.0 1.5e-17 63.5 0.7 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20089329|ref|NP_615404.1| - 1.5e-13 50.7 4.6 5.9e-13 48.8 3.2 1.8 1 1 0 1 1 1 1 Transposase DDE domain DeoC PF01791.4 gi|20089331|ref|NP_615406.1| - 1.4e-55 188.1 0.1 1.7e-55 187.9 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|20089331|ref|NP_615406.1| - 7.9e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family dUTPase PF00692.14 gi|20089332|ref|NP_615407.1| - 1.3e-11 44.0 0.0 1.8e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|20089332|ref|NP_615407.1| - 0.024 13.0 0.0 0.07 11.5 0.0 1.6 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF2341 PF10102.4 gi|20089333|ref|NP_615408.1| - 4.7e-24 84.3 0.0 1.5e-23 82.7 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Med12-LCEWAV PF12145.3 gi|20089334|ref|NP_615409.1| - 9.8 4.5 8.2 16 3.8 5.7 1.2 1 0 0 1 1 1 0 Eukaryotic Mediator 12 subunit domain FMN_red PF03358.10 gi|20089335|ref|NP_615410.1| - 1.7e-25 89.3 0.0 2e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20089335|ref|NP_615410.1| - 2.9e-19 69.3 0.0 3.4e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|20089335|ref|NP_615410.1| - 0.075 13.0 0.0 0.24 11.4 0.0 1.8 1 1 1 2 2 2 0 Flavodoxin domain FMN_red PF03358.10 gi|20089336|ref|NP_615411.1| - 6.2e-23 80.9 0.0 7.1e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20089336|ref|NP_615411.1| - 6.8e-20 71.4 0.0 8.1e-20 71.1 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|20089336|ref|NP_615411.1| - 0.024 14.6 0.0 0.14 12.1 0.0 1.9 2 0 0 2 2 2 0 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|20089336|ref|NP_615411.1| - 0.07 13.1 0.1 9.2 6.2 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin Subtilosin_A PF11420.3 gi|20089336|ref|NP_615411.1| - 0.24 11.4 2.1 0.63 10.1 1.4 1.7 1 0 0 1 1 1 0 Bacteriocin subtilosin A MacB_PCD PF12704.2 gi|20089338|ref|NP_615413.1| - 1.8e-38 132.4 5.1 1.8e-38 132.4 3.5 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20089338|ref|NP_615413.1| - 1e-22 80.1 17.5 3.8e-22 78.2 8.8 2.2 2 0 0 2 2 2 2 FtsX-like permease family DUF4491 PF14898.1 gi|20089339|ref|NP_615414.1| - 0.0049 16.9 4.7 0.0049 16.9 3.3 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4491) Sec20 PF03908.8 gi|20089339|ref|NP_615414.1| - 0.062 13.0 0.9 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Sec20 Ndc1_Nup PF09531.5 gi|20089339|ref|NP_615414.1| - 0.31 9.4 1.3 0.43 8.9 0.9 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF423 PF04241.10 gi|20089339|ref|NP_615414.1| - 0.67 9.9 4.6 1.1 9.1 1.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF423) DUF4519 PF15012.1 gi|20089339|ref|NP_615414.1| - 1.1 9.1 3.0 0.33 10.8 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) SelR PF01641.13 gi|20089340|ref|NP_615415.1| - 3.6e-53 178.5 0.3 4.3e-53 178.2 0.2 1.0 1 0 0 1 1 1 1 SelR domain DUF2296 PF10058.4 gi|20089340|ref|NP_615415.1| - 0.0064 16.2 1.1 0.18 11.5 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|20089340|ref|NP_615415.1| - 0.0086 15.3 2.4 2.2 7.6 0.0 2.7 2 1 0 2 2 2 2 TFIIB zinc-binding DUF2318 PF10080.4 gi|20089340|ref|NP_615415.1| - 0.011 15.4 0.6 1.9 8.2 0.1 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) DZR PF12773.2 gi|20089340|ref|NP_615415.1| - 0.013 15.2 0.4 0.072 12.9 0.3 2.2 1 1 0 1 1 1 0 Double zinc ribbon DUF678 PF05077.7 gi|20089340|ref|NP_615415.1| - 0.026 14.5 0.1 5.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) A2L_zn_ribbon PF08792.5 gi|20089340|ref|NP_615415.1| - 0.026 13.9 1.9 0.48 9.9 0.2 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|20089340|ref|NP_615415.1| - 0.031 13.7 0.5 4.7 6.8 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|20089340|ref|NP_615415.1| - 0.032 14.1 1.4 3.1 7.7 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|20089340|ref|NP_615415.1| - 0.053 12.7 3.6 3.1 7.1 0.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20089340|ref|NP_615415.1| - 0.057 13.2 2.4 7.4 6.4 0.3 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF3725 PF12523.3 gi|20089340|ref|NP_615415.1| - 0.11 12.5 0.0 0.29 11.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3725) Yippee-Mis18 PF03226.9 gi|20089340|ref|NP_615415.1| - 0.15 12.0 0.7 0.66 10.0 0.5 2.0 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-NADH-PPase PF09297.6 gi|20089340|ref|NP_615415.1| - 6.5 6.3 6.5 21 4.7 0.6 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PrgI PF12666.2 gi|20089341|ref|NP_615416.1| - 0.085 13.0 1.5 0.093 12.8 1.1 1.1 1 0 0 1 1 1 0 PrgI family protein HAD_2 PF13419.1 gi|20089342|ref|NP_615417.1| - 3.4e-24 86.0 0.0 4.3e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|20089342|ref|NP_615417.1| - 1.1e-08 35.7 0.0 4.4e-07 30.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20089342|ref|NP_615417.1| - 9e-07 28.5 0.0 1.9e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|20089342|ref|NP_615417.1| - 0.0029 17.7 0.0 0.0049 17.0 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase TusA PF01206.12 gi|20089342|ref|NP_615417.1| - 0.14 11.7 0.1 0.36 10.4 0.1 1.7 1 0 0 1 1 1 0 Sulfurtransferase TusA Hydrolase_6 PF13344.1 gi|20089342|ref|NP_615417.1| - 0.15 11.9 0.3 3.7 7.5 0.2 3.0 2 2 1 3 3 3 0 Haloacid dehalogenase-like hydrolase Glyco_trans_1_3 PF13528.1 gi|20089343|ref|NP_615418.1| - 3.7e-32 111.8 0.0 1.6e-17 63.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|20089343|ref|NP_615418.1| - 3.7e-13 49.4 0.0 6.9e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.15 gi|20089343|ref|NP_615418.1| - 9.7e-09 35.1 0.0 2.8e-08 33.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain UDPGT PF00201.13 gi|20089343|ref|NP_615418.1| - 6.4e-08 31.5 0.0 4.8e-06 25.3 0.0 2.0 2 0 0 2 2 2 2 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_trans_1_4 PF13692.1 gi|20089343|ref|NP_615418.1| - 4.5e-06 26.8 0.0 8.8e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20089343|ref|NP_615418.1| - 2.1e-05 24.3 0.0 4.8e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|20089343|ref|NP_615418.1| - 0.00049 19.5 0.0 0.0012 18.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20089343|ref|NP_615418.1| - 0.084 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_trans_1_3 PF13528.1 gi|20089344|ref|NP_615419.1| - 9.6e-35 120.2 0.0 1.5e-33 116.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|20089344|ref|NP_615419.1| - 8.1e-15 54.8 0.0 1.3e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.15 gi|20089344|ref|NP_615419.1| - 9.3e-08 31.9 0.0 1.1e-06 28.5 0.0 2.5 3 0 0 3 3 3 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_4 PF13692.1 gi|20089344|ref|NP_615419.1| - 4.2e-07 30.1 0.0 1.4e-06 28.5 0.0 1.9 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20089344|ref|NP_615419.1| - 0.00095 19.3 0.0 0.0029 17.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain UDPGT PF00201.13 gi|20089344|ref|NP_615419.1| - 0.0023 16.5 0.0 0.0046 15.5 0.0 1.4 2 0 0 2 2 2 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_transf_4 PF13439.1 gi|20089344|ref|NP_615419.1| - 0.011 15.4 0.0 0.045 13.4 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|20089344|ref|NP_615419.1| - 0.027 14.3 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|20089344|ref|NP_615419.1| - 0.039 13.3 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 PHP PF02811.14 gi|20089345|ref|NP_615420.1| - 5.6e-05 22.9 0.1 0.00012 21.9 0.0 1.6 1 1 0 1 1 1 1 PHP domain MtaB PF12176.3 gi|20089346|ref|NP_615421.1| - 1.6e-251 834.5 5.2 1.8e-251 834.3 3.6 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.14 gi|20089347|ref|NP_615422.1| - 4.5e-19 68.4 0.4 7.6e-19 67.7 0.3 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20089347|ref|NP_615422.1| - 8.4e-13 48.1 0.6 2.3e-12 46.7 0.1 2.0 2 0 0 2 2 2 1 B12 binding domain DUF1724 PF08350.5 gi|20089350|ref|NP_615425.1| - 1.7e-24 85.1 0.1 6.8e-24 83.1 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|20089350|ref|NP_615425.1| - 0.0057 16.9 0.1 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|20089350|ref|NP_615425.1| - 0.0065 16.1 0.1 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|20089350|ref|NP_615425.1| - 0.0065 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|20089350|ref|NP_615425.1| - 0.013 15.2 0.1 0.013 15.2 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF1670 PF07900.6 gi|20089350|ref|NP_615425.1| - 0.027 13.7 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_20 PF12840.2 gi|20089350|ref|NP_615425.1| - 0.056 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain CART PF06373.6 gi|20089350|ref|NP_615425.1| - 0.11 12.4 0.0 1.1 9.2 0.0 2.4 2 1 1 3 3 3 0 Cocaine and amphetamine regulated transcript protein (CART) SepQ PF06622.6 gi|20089350|ref|NP_615425.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 SepQ protein DUF1724 PF08350.5 gi|20089351|ref|NP_615426.1| - 2.8e-27 94.0 0.2 5.1e-27 93.1 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|20089351|ref|NP_615426.1| - 0.0016 18.6 0.0 0.004 17.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|20089351|ref|NP_615426.1| - 0.0033 17.0 0.1 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|20089351|ref|NP_615426.1| - 0.0041 16.8 0.1 0.0098 15.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|20089351|ref|NP_615426.1| - 0.0045 16.6 0.2 0.008 15.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|20089351|ref|NP_615426.1| - 0.065 13.0 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.1 gi|20089351|ref|NP_615426.1| - 0.11 11.9 0.1 0.19 11.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|20089351|ref|NP_615426.1| - 0.12 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SWIM PF04434.12 gi|20089352|ref|NP_615427.1| - 0.028 13.8 0.4 0.049 13.1 0.3 1.4 1 0 0 1 1 1 0 SWIM zinc finger UDG PF03167.14 gi|20089353|ref|NP_615428.1| - 1.8e-13 50.1 0.0 2e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Fer4 PF00037.22 gi|20089354|ref|NP_615429.1| - 9.7e-19 66.1 22.8 3.8e-10 38.9 5.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089354|ref|NP_615429.1| - 7.3e-12 44.9 32.7 3.9e-09 36.1 12.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089354|ref|NP_615429.1| - 2e-10 40.0 23.1 5.4e-06 26.0 6.6 2.4 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089354|ref|NP_615429.1| - 2.7e-10 40.4 18.9 3.4e-10 40.1 13.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089354|ref|NP_615429.1| - 3.6e-10 39.9 17.7 5.5e-10 39.3 12.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089354|ref|NP_615429.1| - 3.7e-09 35.9 23.5 3.2e-05 23.6 4.6 2.8 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089354|ref|NP_615429.1| - 4e-09 36.2 18.2 7e-09 35.4 12.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089354|ref|NP_615429.1| - 7.9e-08 32.9 16.5 0.00062 20.4 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20089354|ref|NP_615429.1| - 3.9e-07 29.9 18.8 4.2e-05 23.4 13.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20089354|ref|NP_615429.1| - 1.3e-06 28.1 9.7 1.3e-06 28.1 6.8 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089354|ref|NP_615429.1| - 5e-06 26.4 18.6 0.0021 18.2 2.8 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089354|ref|NP_615429.1| - 5.1e-06 26.9 22.7 0.00037 21.0 4.7 2.6 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20089354|ref|NP_615429.1| - 2e-05 24.8 23.8 0.016 15.6 5.2 3.1 2 2 1 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20089354|ref|NP_615429.1| - 4.1e-05 23.8 27.4 0.0026 18.1 5.8 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089354|ref|NP_615429.1| - 5.7e-05 23.3 17.8 0.025 14.9 3.3 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089354|ref|NP_615429.1| - 0.00013 22.3 19.4 0.0028 18.0 4.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Stig1 PF04885.8 gi|20089354|ref|NP_615429.1| - 1.9 8.6 12.3 2.6 8.2 8.5 1.2 1 0 0 1 1 1 0 Stigma-specific protein, Stig1 TPR_20 PF14561.1 gi|20089355|ref|NP_615430.1| - 0.00053 20.0 0.9 0.048 13.7 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat DEAD_assoc PF08494.6 gi|20089355|ref|NP_615430.1| - 0.00087 19.0 0.7 0.015 14.9 0.0 2.4 2 0 0 2 2 2 1 DEAD/H associated TPR_14 PF13428.1 gi|20089355|ref|NP_615430.1| - 0.01 16.3 0.3 1.5 9.6 0.0 4.2 3 1 0 3 3 3 0 Tetratricopeptide repeat SWIM PF04434.12 gi|20089355|ref|NP_615430.1| - 0.027 13.9 1.5 0.052 13.0 1.1 1.4 1 0 0 1 1 1 0 SWIM zinc finger 4HB_MCP_1 PF12729.2 gi|20089355|ref|NP_615430.1| - 0.054 12.8 3.2 0.2 10.9 2.0 2.1 1 1 0 1 1 1 0 Four helix bundle sensory module for signal transduction DAO PF01266.19 gi|20089356|ref|NP_615431.1| - 5.7e-39 134.0 0.1 7.5e-39 133.6 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|20089356|ref|NP_615431.1| - 5.3e-15 54.7 0.0 1.4e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_3 PF01494.14 gi|20089356|ref|NP_615431.1| - 3.4e-06 26.3 0.0 5e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|20089356|ref|NP_615431.1| - 4.6e-06 26.5 0.3 1.4e-05 25.0 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|20089356|ref|NP_615431.1| - 0.00018 20.5 1.3 0.0017 17.2 0.8 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|20089356|ref|NP_615431.1| - 0.0004 20.3 0.0 0.0011 18.8 0.1 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20089356|ref|NP_615431.1| - 0.00042 20.6 0.4 0.00086 19.6 0.3 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|20089356|ref|NP_615431.1| - 0.0018 17.4 0.1 0.003 16.7 0.1 1.2 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|20089356|ref|NP_615431.1| - 0.0035 16.4 0.1 0.005 15.9 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|20089356|ref|NP_615431.1| - 0.0042 15.7 0.9 0.0063 15.2 0.6 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|20089356|ref|NP_615431.1| - 0.0095 16.0 0.3 0.1 12.6 0.2 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|20089356|ref|NP_615431.1| - 0.018 13.5 0.1 0.052 12.0 0.2 1.6 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.17 gi|20089356|ref|NP_615431.1| - 0.085 11.7 0.4 0.12 11.1 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|20089356|ref|NP_615431.1| - 0.1 12.2 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|20089356|ref|NP_615431.1| - 0.12 11.2 0.1 0.24 10.2 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein DUF1473 PF07341.6 gi|20089357|ref|NP_615432.1| - 0.095 12.2 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1473) Glyco_hydro_63 PF03200.11 gi|20089358|ref|NP_615433.1| - 0.037 11.8 0.7 0.042 11.7 0.5 1.1 1 0 0 1 1 1 0 Mannosyl oligosaccharide glucosidase Toxin_52 PF15605.1 gi|20089358|ref|NP_615433.1| - 0.098 12.5 3.4 6 6.8 0.1 2.4 2 0 0 2 2 2 0 Putative toxin 52 Prominin PF05478.6 gi|20089358|ref|NP_615433.1| - 0.14 9.6 12.0 0.22 8.9 2.5 2.9 2 1 1 3 3 3 0 Prominin DUF445 PF04286.7 gi|20089358|ref|NP_615433.1| - 0.43 10.0 5.0 0.72 9.3 3.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF445) CAMP_factor PF07373.6 gi|20089358|ref|NP_615433.1| - 0.43 10.0 9.8 1.1 8.6 1.1 3.0 2 1 1 3 3 3 0 CAMP factor (Cfa) Cob_adeno_trans PF01923.13 gi|20089358|ref|NP_615433.1| - 0.46 10.2 5.7 4.5 7.0 2.6 2.4 2 1 1 3 3 3 0 Cobalamin adenosyltransferase Xpo1 PF08389.7 gi|20089358|ref|NP_615433.1| - 0.51 10.2 5.5 11 5.9 1.3 2.5 2 1 0 2 2 2 0 Exportin 1-like protein HR1 PF02185.11 gi|20089358|ref|NP_615433.1| - 0.73 9.6 9.9 5 6.9 1.5 3.2 3 0 0 3 3 3 0 Hr1 repeat Muted PF14942.1 gi|20089358|ref|NP_615433.1| - 0.99 9.2 11.5 0.4 10.5 4.8 2.0 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein ABC2_membrane_3 PF12698.2 gi|20089358|ref|NP_615433.1| - 1.5 7.7 4.7 3.7 6.4 3.2 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein YueH PF14166.1 gi|20089358|ref|NP_615433.1| - 1.7 8.4 10.1 0.43 10.3 0.8 3.2 2 1 1 3 3 3 0 YueH-like protein H-kinase_dim PF02895.9 gi|20089358|ref|NP_615433.1| - 3.2 8.1 8.1 4.7 7.6 1.1 3.1 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain ALMT PF11744.3 gi|20089358|ref|NP_615433.1| - 3.3 6.2 6.3 0.56 8.8 2.0 1.4 2 0 0 2 2 2 0 Aluminium activated malate transporter SpoIIIAH PF12685.2 gi|20089358|ref|NP_615433.1| - 3.5 7.0 16.9 37 3.7 0.0 2.7 2 1 0 2 2 2 0 SpoIIIAH-like protein Syntaxin-6_N PF09177.6 gi|20089358|ref|NP_615433.1| - 4 7.9 12.7 6.3 7.2 0.9 3.2 2 1 1 3 3 3 0 Syntaxin 6, N-terminal DUF3571 PF12095.3 gi|20089358|ref|NP_615433.1| - 4.9 7.4 7.7 21 5.4 0.6 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3571) Wbp11 PF09429.5 gi|20089358|ref|NP_615433.1| - 5.8 6.9 8.7 2.6 8.0 0.9 3.1 2 1 2 4 4 4 0 WW domain binding protein 11 Frataxin_Cyay PF01491.11 gi|20089358|ref|NP_615433.1| - 8.9 6.1 10.7 17 5.2 0.1 3.3 3 0 0 3 3 3 0 Frataxin-like domain Gag_p6 PF08705.6 gi|20089360|ref|NP_615435.1| - 0.026 14.5 1.2 0.29 11.2 0.0 2.4 2 1 0 2 2 2 0 Gag protein p6 DDE_Tnp_1_6 PF13751.1 gi|20089361|ref|NP_615436.1| - 1.4e-28 99.4 6.1 2.8e-28 98.4 3.7 2.1 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20089361|ref|NP_615436.1| - 1.8e-19 70.1 0.5 3.7e-19 69.1 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20089361|ref|NP_615436.1| - 1e-17 63.7 0.0 3.6e-17 62.0 0.0 2.0 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|20089361|ref|NP_615436.1| - 0.0039 17.3 0.1 0.15 12.2 0.0 2.8 2 0 0 2 2 2 1 Transposase DDE domain AhpC-TSA PF00578.16 gi|20089361|ref|NP_615436.1| - 0.022 14.4 0.4 0.05 13.2 0.3 1.5 1 0 0 1 1 1 0 AhpC/TSA family Spore_YhaL PF14147.1 gi|20089362|ref|NP_615437.1| - 0.0075 15.6 0.2 0.01 15.2 0.2 1.2 1 0 0 1 1 1 1 Sporulation protein YhaL DivIC PF04977.10 gi|20089362|ref|NP_615437.1| - 0.09 12.2 0.6 0.15 11.5 0.4 1.3 1 0 0 1 1 1 0 Septum formation initiator DUF2681 PF10883.3 gi|20089362|ref|NP_615437.1| - 0.096 12.9 0.0 0.096 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) DUF2856 PF11043.3 gi|20089364|ref|NP_615439.1| - 0.12 12.5 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2856) ABC2_membrane_5 PF13346.1 gi|20089365|ref|NP_615440.1| - 0.0037 16.5 1.9 0.0052 16.0 1.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein PRC PF05239.11 gi|20089366|ref|NP_615441.1| - 6.1e-16 58.0 0.0 7.8e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain PDZ_2 PF13180.1 gi|20089366|ref|NP_615441.1| - 0.0053 16.6 0.0 0.02 14.7 0.0 1.7 2 0 0 2 2 2 1 PDZ domain DUF3290 PF11694.3 gi|20089366|ref|NP_615441.1| - 0.056 13.1 0.2 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) adh_short PF00106.20 gi|20089368|ref|NP_615443.1| - 6.3e-31 107.5 0.1 9.9e-31 106.9 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|20089368|ref|NP_615443.1| - 6.6e-28 98.0 0.1 7.7e-28 97.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|20089368|ref|NP_615443.1| - 3.3e-12 46.4 0.0 6.3e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|20089368|ref|NP_615443.1| - 0.014 15.4 2.0 0.26 11.2 0.0 2.3 2 1 0 2 2 2 0 NADH(P)-binding MoeA_C PF03454.10 gi|20089368|ref|NP_615443.1| - 0.03 14.2 0.0 0.087 12.7 0.0 1.8 1 0 0 1 1 1 0 MoeA C-terminal region (domain IV) Shikimate_DH PF01488.15 gi|20089368|ref|NP_615443.1| - 0.11 12.6 0.5 0.25 11.4 0.0 2.0 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase UPF0175 PF03683.8 gi|20089370|ref|NP_615445.1| - 0.00031 20.1 0.0 0.0011 18.3 0.0 2.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF4364 PF14277.1 gi|20089370|ref|NP_615445.1| - 0.048 13.2 0.1 0.082 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) RC-P840_PscD PF10657.4 gi|20089370|ref|NP_615445.1| - 0.069 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD HTH_45 PF14947.1 gi|20089370|ref|NP_615445.1| - 0.071 12.9 0.3 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DUF4393 PF14337.1 gi|20089370|ref|NP_615445.1| - 0.087 12.2 0.9 0.23 10.8 0.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4393) Gram_pos_anchor PF00746.16 gi|20089372|ref|NP_615447.1| - 0.039 13.7 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 Gram positive anchor Nup96 PF12110.3 gi|20089372|ref|NP_615447.1| - 0.13 11.3 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Nuclear protein 96 PQQ_2 PF13360.1 gi|20089373|ref|NP_615448.1| - 8.7e-05 22.0 1.4 0.23 10.9 0.1 2.4 2 1 0 2 2 2 2 PQQ-like domain Kelch_4 PF13418.1 gi|20089373|ref|NP_615448.1| - 0.025 14.3 2.5 5.6 6.8 0.1 4.4 4 0 0 4 4 4 0 Galactose oxidase, central domain DUF2020 PF09449.5 gi|20089373|ref|NP_615448.1| - 0.03 13.9 0.1 0.095 12.3 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2020) N6_Mtase PF02384.11 gi|20089374|ref|NP_615449.1| - 4.4e-21 75.2 0.1 4.7e-21 75.1 0.1 1.0 1 0 0 1 1 1 1 N-6 DNA Methylase LigB PF02900.13 gi|20089375|ref|NP_615450.1| - 3e-56 190.3 0.0 3.4e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Kelch_4 PF13418.1 gi|20089376|ref|NP_615451.1| - 8.7e-06 25.4 3.8 5.5 6.8 0.1 5.9 6 0 0 6 6 6 2 Galactose oxidase, central domain Trypan_PARP PF05887.6 gi|20089376|ref|NP_615451.1| - 4.5e-05 23.2 7.9 7.2e-05 22.6 5.5 1.2 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) DUF295 PF03478.13 gi|20089376|ref|NP_615451.1| - 0.0015 17.8 1.4 5.1 6.5 0.0 4.4 4 0 0 4 4 4 1 Protein of unknown function (DUF295) CarboxypepD_reg PF13620.1 gi|20089376|ref|NP_615451.1| - 0.11 12.5 0.2 1.1 9.4 0.0 2.5 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain PSI_PsaH PF03244.9 gi|20089376|ref|NP_615451.1| - 0.12 11.6 0.4 18 4.5 0.3 2.5 2 0 0 2 2 2 0 Photosystem I reaction centre subunit VI Pilin PF00114.14 gi|20089376|ref|NP_615451.1| - 0.27 11.9 4.2 0.41 11.3 0.1 3.0 3 1 0 3 3 3 0 Pilin (bacterial filament) PKD PF00801.15 gi|20089377|ref|NP_615452.1| - 3.5e-10 39.4 4.6 7.1e-10 38.4 3.2 1.5 1 0 0 1 1 1 1 PKD domain DUF295 PF03478.13 gi|20089377|ref|NP_615452.1| - 0.038 13.3 8.4 0.5 9.7 0.0 4.9 4 0 0 4 4 4 0 Protein of unknown function (DUF295) PD40 PF07676.7 gi|20089377|ref|NP_615452.1| - 0.048 13.3 23.0 1.8 8.3 0.1 9.3 10 0 0 10 10 10 0 WD40-like Beta Propeller Repeat Dockerin_1 PF00404.13 gi|20089377|ref|NP_615452.1| - 0.3 10.8 2.4 0.75 9.6 1.7 1.7 1 0 0 1 1 1 0 Dockerin type I repeat Kelch_4 PF13418.1 gi|20089377|ref|NP_615452.1| - 0.89 9.3 15.0 31 4.4 0.0 7.8 11 0 0 11 11 11 0 Galactose oxidase, central domain PocR PF10114.4 gi|20089379|ref|NP_615454.1| - 2.9e-68 228.3 0.2 3e-67 225.0 0.0 2.3 2 0 0 2 2 2 1 Sensory domain found in PocR PAS_3 PF08447.6 gi|20089379|ref|NP_615454.1| - 8.4e-41 137.9 2.8 3.4e-21 75.1 0.0 3.7 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|20089379|ref|NP_615454.1| - 8.2e-34 115.2 1.1 8.2e-34 115.2 0.7 2.2 2 0 0 2 2 1 1 Histidine kinase PAS_9 PF13426.1 gi|20089379|ref|NP_615454.1| - 1.2e-29 102.7 0.3 1e-16 61.1 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|20089379|ref|NP_615454.1| - 5.1e-20 71.5 0.0 2.1e-11 43.8 0.0 3.6 4 0 0 4 4 4 2 PAS fold PAS PF00989.19 gi|20089379|ref|NP_615454.1| - 1.1e-19 70.2 0.0 2.8e-11 43.1 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|20089379|ref|NP_615454.1| - 1.3e-11 44.2 0.0 3e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|20089379|ref|NP_615454.1| - 0.00019 21.7 0.4 0.00081 19.7 0.0 2.3 2 0 0 2 2 2 1 HWE histidine kinase PAS_8 PF13188.1 gi|20089379|ref|NP_615454.1| - 0.00035 20.3 0.0 0.0023 17.7 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|20089379|ref|NP_615454.1| - 0.0018 18.0 0.0 0.01 15.5 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF4463 PF14703.1 gi|20089379|ref|NP_615454.1| - 0.043 14.3 5.3 5.5 7.5 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4463) DUF2564 PF10819.3 gi|20089379|ref|NP_615454.1| - 0.11 12.6 0.7 1 9.5 0.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2564) Pkip-1 PF06878.6 gi|20089379|ref|NP_615454.1| - 1.9 8.3 9.6 0.26 11.1 1.1 2.8 3 0 0 3 3 3 0 Pkip-1 protein TMPIT PF07851.8 gi|20089379|ref|NP_615454.1| - 4 6.4 7.2 4.7 6.1 0.4 2.2 2 0 0 2 2 2 0 TMPIT-like protein SDF PF00375.13 gi|20089380|ref|NP_615455.1| - 8.7e-66 222.2 34.9 4.1e-65 220.0 22.2 2.1 1 1 1 2 2 2 2 Sodium:dicarboxylate symporter family SBP_bac_3 PF00497.15 gi|20089380|ref|NP_615455.1| - 1.3e-30 106.3 0.0 1.8e-30 105.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TcdA_TcdB_pore PF12920.2 gi|20089380|ref|NP_615455.1| - 0.43 8.4 1.7 0.72 7.6 1.2 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain YoqO PF14037.1 gi|20089381|ref|NP_615456.1| - 0.00076 19.5 3.5 0.00076 19.5 2.5 2.1 3 0 0 3 3 3 1 YoqO-like protein 7TMR-DISM_7TM PF07695.6 gi|20089381|ref|NP_615456.1| - 0.081 12.5 27.4 0.32 10.6 5.3 2.1 1 1 1 2 2 2 0 7TM diverse intracellular signalling Ala_racemase_N PF01168.15 gi|20089382|ref|NP_615457.1| - 1.6e-41 142.2 0.0 1.8e-41 142.1 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Uteroglobin PF01099.12 gi|20089382|ref|NP_615457.1| - 0.019 14.7 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 0 Uteroglobin family DUF1356 PF07092.7 gi|20089383|ref|NP_615458.1| - 0.13 11.3 1.0 0.15 11.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) LigA PF07746.6 gi|20089385|ref|NP_615460.1| - 0.067 13.1 0.1 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Frankia_peptide PF14407.1 gi|20089385|ref|NP_615460.1| - 0.13 11.9 0.4 1 9.1 0.0 2.0 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. DUF4480 PF13715.1 gi|20089386|ref|NP_615461.1| - 2.3e-10 40.3 3.7 2.5e-08 33.8 0.1 3.8 4 1 0 4 4 4 2 Domain of unknown function (DUF4480) DUF4198 PF10670.4 gi|20089386|ref|NP_615461.1| - 0.022 14.7 0.0 0.42 10.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) DUF2012 PF09430.5 gi|20089386|ref|NP_615461.1| - 0.032 14.0 0.0 6 6.7 0.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2012) GyrI-like PF06445.10 gi|20089388|ref|NP_615463.1| - 3.5e-32 111.5 1.3 4e-32 111.3 0.9 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|20089388|ref|NP_615463.1| - 8.4e-10 38.8 0.8 1.2e-09 38.3 0.6 1.3 1 1 0 1 1 1 1 Integron-associated effector binding protein Gastrin PF00918.12 gi|20089389|ref|NP_615464.1| - 0.025 15.3 0.0 0.039 14.7 0.0 1.2 1 0 0 1 1 1 0 Gastrin/cholecystokinin family DUF3006 PF11213.3 gi|20089390|ref|NP_615465.1| - 0.053 13.2 0.0 0.06 13.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) DUF2104 PF09877.4 gi|20089391|ref|NP_615466.1| - 0.11 12.4 7.2 0.43 10.5 0.4 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2104) DUF3667 PF12412.3 gi|20089391|ref|NP_615466.1| - 2.8 7.3 0.0 2.8 7.3 0.0 3.8 5 0 0 5 5 5 0 Protein of unknown function (DUF3667) HTH_20 PF12840.2 gi|20089393|ref|NP_615468.1| - 4.7e-12 45.5 0.0 7.1e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|20089393|ref|NP_615468.1| - 3.6e-10 39.3 0.0 9.2e-10 38.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|20089393|ref|NP_615468.1| - 9.7e-08 31.6 0.3 1.9e-07 30.6 0.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|20089393|ref|NP_615468.1| - 3.4e-07 30.4 0.1 6.6e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20089393|ref|NP_615468.1| - 5.7e-06 25.9 0.0 1.1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|20089393|ref|NP_615468.1| - 1.3e-05 24.9 1.2 0.00053 19.8 0.8 2.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|20089393|ref|NP_615468.1| - 2.7e-05 23.8 0.8 6.4e-05 22.6 0.5 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|20089393|ref|NP_615468.1| - 3.4e-05 23.3 1.2 9e-05 22.0 0.1 2.3 2 1 1 3 3 2 1 HTH domain HTH_34 PF13601.1 gi|20089393|ref|NP_615468.1| - 5.1e-05 23.2 0.8 0.00018 21.4 0.2 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.9 gi|20089393|ref|NP_615468.1| - 0.0002 21.0 0.1 0.00036 20.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|20089393|ref|NP_615468.1| - 0.00048 19.7 0.1 0.00093 18.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20089393|ref|NP_615468.1| - 0.00063 19.0 0.4 0.0013 18.0 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|20089393|ref|NP_615468.1| - 0.00095 18.7 1.3 0.0012 18.4 0.1 1.8 2 0 0 2 2 2 1 HxlR-like helix-turn-helix TFIIE_alpha PF02002.12 gi|20089393|ref|NP_615468.1| - 0.0018 17.7 2.4 0.0055 16.1 0.9 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|20089393|ref|NP_615468.1| - 0.0029 17.7 0.3 0.012 15.7 0.1 1.9 2 0 0 2 2 2 1 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|20089393|ref|NP_615468.1| - 0.0032 17.3 1.6 0.0043 16.9 0.2 1.9 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein DUF1495 PF07381.6 gi|20089393|ref|NP_615468.1| - 0.013 15.1 0.5 0.21 11.2 0.3 2.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF2513 PF10711.4 gi|20089393|ref|NP_615468.1| - 0.017 15.1 0.2 0.036 14.1 0.0 1.6 2 0 0 2 2 1 0 Hypothetical protein (DUF2513) HTH_IclR PF09339.5 gi|20089393|ref|NP_615468.1| - 0.019 14.5 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF202 PF02656.10 gi|20089393|ref|NP_615468.1| - 0.021 15.0 0.3 0.038 14.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) HTH_29 PF13551.1 gi|20089393|ref|NP_615468.1| - 0.022 14.8 0.1 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix B-block_TFIIIC PF04182.7 gi|20089393|ref|NP_615468.1| - 0.026 14.3 0.1 0.065 13.0 0.0 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|20089393|ref|NP_615468.1| - 0.03 13.8 0.1 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain DUF4364 PF14277.1 gi|20089393|ref|NP_615468.1| - 0.047 13.3 0.5 0.31 10.6 0.0 2.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4364) FUR PF01475.14 gi|20089393|ref|NP_615468.1| - 0.053 13.4 0.2 0.11 12.4 0.1 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_10 PF04967.7 gi|20089393|ref|NP_615468.1| - 0.059 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain ArsR PF09824.4 gi|20089393|ref|NP_615468.1| - 0.059 12.6 0.1 0.093 12.0 0.1 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator S10_plectin PF03501.10 gi|20089393|ref|NP_615468.1| - 0.065 13.1 0.2 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Plectin/S10 domain HTH_DeoR PF08220.7 gi|20089393|ref|NP_615468.1| - 0.1 12.1 0.2 0.21 11.1 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PaaX PF07848.7 gi|20089393|ref|NP_615468.1| - 0.11 12.5 0.1 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein FTP PF07504.8 gi|20089395|ref|NP_615470.1| - 0.0081 15.6 0.2 0.02 14.3 0.1 1.7 1 0 0 1 1 1 1 Fungalysin/Thermolysin Propeptide Motif Endonuclease_NS PF01223.18 gi|20089395|ref|NP_615470.1| - 0.036 13.6 0.0 0.078 12.5 0.0 1.5 2 0 0 2 2 2 0 DNA/RNA non-specific endonuclease Pentapeptide_4 PF13599.1 gi|20089396|ref|NP_615471.1| - 7.2e-22 76.9 32.0 2.9e-11 42.9 6.6 2.4 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|20089396|ref|NP_615471.1| - 3.7e-19 67.5 25.0 3e-07 29.5 2.8 4.0 2 2 2 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|20089396|ref|NP_615471.1| - 7.2e-15 54.6 29.6 5.7e-07 29.3 5.9 4.2 2 2 1 3 3 3 3 Pentapeptide repeats (9 copies) CfAFP PF05264.6 gi|20089396|ref|NP_615471.1| - 0.0042 16.8 4.4 0.2 11.4 0.9 2.1 2 0 0 2 2 2 2 Choristoneura fumiferana antifreeze protein (CfAFP) Novirhabdo_Nv PF05554.6 gi|20089396|ref|NP_615471.1| - 4.6 6.7 10.3 2.7 7.5 0.3 2.9 2 1 1 3 3 3 0 Viral hemorrhagic septicemia virus non-virion protein Peptidase_C39_2 PF13529.1 gi|20089397|ref|NP_615472.1| - 1.5e-09 38.3 0.6 6.4e-09 36.3 0.0 2.2 2 1 0 2 2 2 1 Peptidase_C39 like family Lactonase PF10282.4 gi|20089398|ref|NP_615473.1| - 5.8e-21 74.9 6.1 1e-08 34.6 0.3 3.9 1 1 0 3 3 3 3 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|20089398|ref|NP_615473.1| - 1.3e-09 37.8 10.2 0.00018 21.0 0.6 3.9 2 2 2 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|20089398|ref|NP_615473.1| - 7.9e-07 27.6 6.6 0.086 11.1 0.2 3.8 1 1 3 4 4 4 4 Cytochrome D1 heme domain PQQ_3 PF13570.1 gi|20089398|ref|NP_615473.1| - 1e-06 28.8 17.2 0.22 11.8 0.0 6.5 6 0 0 6 6 6 3 PQQ-like domain Arylesterase PF01731.15 gi|20089398|ref|NP_615473.1| - 8.1e-05 22.5 12.7 0.67 9.9 0.0 6.3 2 2 5 7 7 7 2 Arylesterase NHL PF01436.16 gi|20089398|ref|NP_615473.1| - 0.00039 20.2 14.2 3.2 7.8 0.4 6.4 6 0 0 6 6 6 1 NHL repeat Thioredox_DsbH PF03190.10 gi|20089398|ref|NP_615473.1| - 0.00086 19.0 2.4 5.4 6.7 0.0 4.9 3 1 2 6 6 6 1 Protein of unknown function, DUF255 PQQ PF01011.16 gi|20089398|ref|NP_615473.1| - 0.0012 18.2 4.4 0.0027 17.1 0.2 3.7 4 0 0 4 4 4 1 PQQ enzyme repeat PD40 PF07676.7 gi|20089398|ref|NP_615473.1| - 0.0096 15.5 0.3 27 4.5 0.0 4.5 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat PBCV_basic_adap PF08789.5 gi|20089398|ref|NP_615473.1| - 0.0097 15.5 6.2 8 6.2 0.0 4.9 5 0 0 5 5 5 1 PBCV-specific basic adaptor domain UPF0228 PF05727.6 gi|20089400|ref|NP_615475.1| - 6.3e-55 184.3 2.1 8.1e-55 183.9 1.4 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) Lactonase PF10282.4 gi|20089401|ref|NP_615476.1| - 4.9e-14 52.1 9.5 2.6e-05 23.4 0.7 3.5 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|20089401|ref|NP_615476.1| - 1.1e-13 51.1 8.9 1.3e-06 28.0 0.9 3.7 1 1 2 3 3 3 3 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|20089401|ref|NP_615476.1| - 2.4e-12 45.8 7.1 1.6e-06 26.6 0.2 3.7 1 1 3 4 4 4 4 Cytochrome D1 heme domain Arylesterase PF01731.15 gi|20089401|ref|NP_615476.1| - 3e-09 36.7 13.2 0.22 11.5 0.1 5.5 2 2 3 5 5 5 4 Arylesterase Str_synth PF03088.11 gi|20089401|ref|NP_615476.1| - 1.3e-08 34.7 0.8 0.93 9.5 0.0 4.9 2 2 3 5 5 5 3 Strictosidine synthase PD40 PF07676.7 gi|20089401|ref|NP_615476.1| - 3.1e-08 33.0 3.5 2.6 7.7 0.0 6.4 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat NHL PF01436.16 gi|20089401|ref|NP_615476.1| - 1.1e-05 25.1 16.2 0.2 11.6 0.0 7.4 7 0 0 7 7 7 2 NHL repeat DUF4102 PF13356.1 gi|20089401|ref|NP_615476.1| - 1.5e-05 24.7 0.0 29 4.6 0.0 5.6 1 1 3 5 5 5 0 Domain of unknown function (DUF4102) Kelch_6 PF13964.1 gi|20089401|ref|NP_615476.1| - 0.00014 21.9 11.0 2.8 8.2 0.1 6.1 6 1 1 7 7 7 2 Kelch motif SBP56 PF05694.6 gi|20089401|ref|NP_615476.1| - 0.0002 20.0 0.4 13 4.1 0.0 4.9 1 1 3 5 5 5 0 56kDa selenium binding protein (SBP56) DUF1513 PF07433.6 gi|20089401|ref|NP_615476.1| - 0.0012 17.7 2.5 0.73 8.6 0.1 3.2 1 1 4 5 5 5 2 Protein of unknown function (DUF1513) PBCV_basic_adap PF08789.5 gi|20089401|ref|NP_615476.1| - 0.0045 16.6 7.0 12 5.6 0.1 5.1 5 0 0 5 5 5 0 PBCV-specific basic adaptor domain Thioredoxin_8 PF13905.1 gi|20089401|ref|NP_615476.1| - 0.0047 17.0 0.8 10 6.3 0.0 3.8 4 1 0 4 4 4 1 Thioredoxin-like Kelch_3 PF13415.1 gi|20089401|ref|NP_615476.1| - 0.029 14.5 4.2 6 7.1 0.1 4.2 5 0 0 5 5 5 0 Galactose oxidase, central domain Mac PF12464.3 gi|20089402|ref|NP_615477.1| - 9e-17 60.8 0.2 1.6e-16 60.0 0.2 1.4 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep PF00132.19 gi|20089402|ref|NP_615477.1| - 8.9e-12 43.9 14.5 4.9e-09 35.2 5.0 3.1 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20089402|ref|NP_615477.1| - 1e-07 31.3 10.9 1.9e-07 30.4 3.7 2.6 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase Asparaginase_2 PF01112.13 gi|20089402|ref|NP_615477.1| - 0.13 10.9 0.5 0.19 10.4 0.3 1.1 1 0 0 1 1 1 0 Asparaginase YrhK PF14145.1 gi|20089404|ref|NP_615479.1| - 6.9e-05 22.4 33.7 0.15 11.7 7.3 4.8 2 2 2 4 4 4 3 YrhK-like protein DUF2721 PF11026.3 gi|20089404|ref|NP_615479.1| - 0.08 12.5 6.2 0.55 9.8 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2721) Serpentine_r_xa PF03383.10 gi|20089404|ref|NP_615479.1| - 0.1 12.3 0.9 14 5.4 0.1 2.4 2 0 0 2 2 2 0 Caenorhabditis serpentine receptor-like protein, class xa DUF4131 PF13567.1 gi|20089404|ref|NP_615479.1| - 0.27 10.6 16.6 0.064 12.6 1.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF973 PF06157.6 gi|20089404|ref|NP_615479.1| - 0.63 8.9 3.3 1.9 7.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF973) NfeD PF01957.13 gi|20089404|ref|NP_615479.1| - 9.2 6.3 8.9 1.7 8.7 1.1 2.4 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding GyrI-like PF06445.10 gi|20089405|ref|NP_615480.1| - 1e-29 103.5 0.9 1.2e-29 103.3 0.6 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|20089405|ref|NP_615480.1| - 1.5e-08 34.7 0.3 2.7e-08 33.9 0.2 1.5 1 1 0 1 1 1 1 Integron-associated effector binding protein TBPIP PF07106.8 gi|20089406|ref|NP_615481.1| - 0.082 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Plasmid_stabil PF05016.9 gi|20089407|ref|NP_615482.1| - 0.014 15.7 0.0 0.017 15.4 0.0 1.1 1 0 0 1 1 1 0 Plasmid stabilisation system protein Arc_PepC_II PF06847.6 gi|20089408|ref|NP_615483.1| - 2.1e-29 101.7 0.0 4.4e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|20089408|ref|NP_615483.1| - 4e-14 52.6 9.9 4e-14 52.6 6.9 2.2 1 1 1 2 2 2 1 Type IV leader peptidase family DUF1056 PF06341.6 gi|20089408|ref|NP_615483.1| - 3.4 7.7 7.6 0.56 10.2 0.8 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) TP_methylase PF00590.15 gi|20089409|ref|NP_615484.1| - 2.1e-30 105.9 0.1 5.3e-30 104.6 0.1 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|20089410|ref|NP_615485.1| - 4.8e-54 183.0 1.5 7e-54 182.5 1.0 1.2 1 0 0 1 1 1 1 CbiD DNA_mis_repair PF01119.14 gi|20089411|ref|NP_615486.1| - 3e-39 133.1 0.0 5.2e-39 132.3 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|20089411|ref|NP_615486.1| - 5.4e-37 126.5 0.0 1.3e-36 125.3 0.0 1.6 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.1 gi|20089411|ref|NP_615486.1| - 6.6e-15 54.9 0.7 1.1e-14 54.2 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|20089411|ref|NP_615486.1| - 1.2e-10 41.0 0.0 2.8e-10 39.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|20089412|ref|NP_615487.1| - 3.6e-101 337.4 0.0 6.8e-101 336.5 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|20089412|ref|NP_615487.1| - 3.5e-50 170.6 1.0 3.5e-50 170.6 0.7 1.7 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|20089412|ref|NP_615487.1| - 7.1e-45 151.6 0.0 2.9e-44 149.6 0.0 2.0 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|20089412|ref|NP_615487.1| - 2.8e-32 110.7 0.4 8.8e-32 109.1 0.3 2.0 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|20089412|ref|NP_615487.1| - 1.4e-24 86.6 0.0 5.8e-24 84.7 0.0 2.1 2 0 0 2 2 2 1 MutS domain II AAA_29 PF13555.1 gi|20089412|ref|NP_615487.1| - 0.01 15.3 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain C1_2 PF03107.11 gi|20089413|ref|NP_615488.1| - 0.066 13.3 0.3 0.11 12.6 0.2 1.3 1 0 0 1 1 1 0 C1 domain DDHD PF02862.12 gi|20089413|ref|NP_615488.1| - 0.1 12.3 14.0 0.12 12.1 9.7 1.1 1 0 0 1 1 1 0 DDHD domain Zip PF02535.17 gi|20089413|ref|NP_615488.1| - 0.12 11.3 12.7 0.14 11.1 8.8 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter SelP_N PF04592.9 gi|20089413|ref|NP_615488.1| - 0.13 11.6 11.3 0.15 11.4 7.8 1.1 1 0 0 1 1 1 0 Selenoprotein P, N terminal region NOA36 PF06524.7 gi|20089413|ref|NP_615488.1| - 0.73 9.0 19.5 0.88 8.7 13.5 1.1 1 0 0 1 1 1 0 NOA36 protein Raftlin PF15250.1 gi|20089413|ref|NP_615488.1| - 0.97 7.8 14.5 1 7.7 10.1 1.0 1 0 0 1 1 1 0 Raftlin Pal1 PF08316.6 gi|20089413|ref|NP_615488.1| - 1.7 9.1 5.4 2.3 8.6 3.8 1.2 1 0 0 1 1 1 0 Pal1 cell morphology protein PPP4R2 PF09184.6 gi|20089413|ref|NP_615488.1| - 2.4 7.6 33.3 2.7 7.4 23.1 1.1 1 0 0 1 1 1 0 PPP4R2 Rtf2 PF04641.7 gi|20089413|ref|NP_615488.1| - 3.2 6.8 26.1 3.5 6.7 18.1 1.1 1 0 0 1 1 1 0 Rtf2 RING-finger DUF1510 PF07423.6 gi|20089413|ref|NP_615488.1| - 3.7 6.8 41.0 4.3 6.6 28.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Hom_end_hint PF05203.11 gi|20089413|ref|NP_615488.1| - 5.1 6.7 12.1 6.2 6.4 8.4 1.1 1 0 0 1 1 1 0 Hom_end-associated Hint DUF4045 PF13254.1 gi|20089413|ref|NP_615488.1| - 6.1 6.0 18.5 6.3 5.9 12.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4045) CobT PF06213.7 gi|20089413|ref|NP_615488.1| - 8 5.5 37.6 9.1 5.3 26.1 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT RR_TM4-6 PF06459.7 gi|20089413|ref|NP_615488.1| - 9.9 5.9 32.1 11 5.8 22.2 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 CDP-OH_P_transf PF01066.16 gi|20089414|ref|NP_615489.1| - 5.1e-16 58.8 6.7 1e-15 57.8 4.6 1.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Ca_hom_mod PF14798.1 gi|20089414|ref|NP_615489.1| - 0.093 11.6 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Calcium homeostasis modulator Claudin_2 PF13903.1 gi|20089414|ref|NP_615489.1| - 0.096 12.3 7.9 0.23 11.1 0.2 2.3 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction EmrE PF13536.1 gi|20089414|ref|NP_615489.1| - 0.13 12.4 0.1 0.13 12.4 0.1 2.6 3 0 0 3 3 3 0 Multidrug resistance efflux transporter GerA PF03323.8 gi|20089414|ref|NP_615489.1| - 0.22 9.6 1.0 0.31 9.1 0.7 1.1 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein CCG PF02754.11 gi|20089415|ref|NP_615490.1| - 1.2e-32 111.7 3.3 1.9e-15 56.5 0.2 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|20089415|ref|NP_615490.1| - 1.2e-09 38.0 3.7 1.2e-09 38.0 2.6 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089415|ref|NP_615490.1| - 1.5e-08 34.3 3.9 1.5e-08 34.3 2.7 3.3 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089415|ref|NP_615490.1| - 1.5e-07 31.6 4.8 1.5e-07 31.6 3.3 3.0 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089415|ref|NP_615490.1| - 3.1e-05 23.9 8.7 0.00095 19.3 1.3 4.5 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089415|ref|NP_615490.1| - 3.4e-05 24.1 17.2 0.0038 17.5 1.7 3.8 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089415|ref|NP_615490.1| - 3.7e-05 23.9 19.7 0.0027 17.9 1.8 4.2 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089415|ref|NP_615490.1| - 5.2e-05 22.6 12.0 0.00011 21.5 1.3 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089415|ref|NP_615490.1| - 6.9e-05 22.5 11.7 0.0016 18.2 1.7 4.4 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20089415|ref|NP_615490.1| - 0.00029 20.5 1.3 0.00029 20.5 0.9 4.0 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089415|ref|NP_615490.1| - 0.0006 20.4 14.4 0.0078 16.9 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|20089415|ref|NP_615490.1| - 0.012 15.9 11.3 0.35 11.2 0.9 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|20089415|ref|NP_615490.1| - 0.013 15.9 17.2 0.049 14.0 0.1 3.8 4 1 0 4 4 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089415|ref|NP_615490.1| - 0.023 14.5 18.9 0.047 13.5 0.8 3.8 4 1 1 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20089415|ref|NP_615490.1| - 0.42 11.2 14.0 0.34 11.5 0.2 3.4 4 1 0 4 4 3 0 4Fe-4S single cluster domain B12-binding PF02310.14 gi|20089416|ref|NP_615491.1| - 9.9e-27 93.2 0.3 1.8e-26 92.3 0.2 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20089416|ref|NP_615491.1| - 1.3e-18 66.8 0.7 2.3e-18 65.9 0.5 1.4 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.6 gi|20089416|ref|NP_615491.1| - 0.033 12.6 0.0 0.04 12.3 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) MTTB PF06253.6 gi|20089417|ref|NP_615492.1| - 9.6e-91 304.0 0.0 1.3e-90 303.6 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.14 gi|20089418|ref|NP_615493.1| - 2e-22 79.3 0.3 3.5e-22 78.5 0.2 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20089418|ref|NP_615493.1| - 1.2e-19 70.0 0.9 1.2e-19 70.0 0.6 1.8 2 0 0 2 2 2 1 B12 binding domain EmrE PF13536.1 gi|20089419|ref|NP_615494.1| - 5.7e-12 45.8 12.9 5.7e-12 45.8 9.0 3.6 3 1 0 3 3 3 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|20089419|ref|NP_615494.1| - 2.4e-11 43.7 44.7 1.7e-07 31.2 9.8 3.5 4 2 0 4 4 4 2 EamA-like transporter family SepZ PF06066.6 gi|20089419|ref|NP_615494.1| - 0.47 10.4 5.2 2.2 8.3 1.6 2.7 2 0 0 2 2 2 0 SepZ DUF1440 PF07274.7 gi|20089419|ref|NP_615494.1| - 7.6 6.5 10.6 0.58 10.1 1.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1440) Dimeth_Pyl PF09505.5 gi|20089421|ref|NP_615496.1| - 0 1068.9 10.3 0 1068.7 7.2 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) XFP_C PF09363.5 gi|20089421|ref|NP_615496.1| - 0.0024 17.3 0.1 0.0041 16.5 0.1 1.3 1 0 0 1 1 1 1 XFP C-terminal domain PepSY PF03413.14 gi|20089422|ref|NP_615497.1| - 1.9e-20 73.2 7.3 4e-11 43.3 0.6 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain PepSY_2 PF13670.1 gi|20089422|ref|NP_615497.1| - 0.0034 17.2 5.2 0.42 10.5 0.5 3.2 2 1 1 3 3 3 2 Peptidase propeptide and YPEB domain Myco_19_kDa PF05481.7 gi|20089422|ref|NP_615497.1| - 0.083 12.7 2.1 0.1 12.4 0.6 1.9 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen CPT PF07931.7 gi|20089422|ref|NP_615497.1| - 0.12 12.0 0.2 12 5.4 0.0 2.3 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein DUF2874 PF11396.3 gi|20089422|ref|NP_615497.1| - 0.6 10.1 3.6 0.36 10.8 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) GvpH PF05455.6 gi|20089422|ref|NP_615497.1| - 0.84 9.2 4.9 0.92 9.1 2.9 1.4 1 1 0 1 1 1 0 GvpH LPAM_1 PF08139.7 gi|20089422|ref|NP_615497.1| - 3.1 8.1 4.2 8.2 6.8 2.9 1.7 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site tRNA-synt_1f PF01921.13 gi|20089423|ref|NP_615498.1| - 9.8e-140 465.2 0.0 1.2e-139 464.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|20089423|ref|NP_615498.1| - 7.2e-08 31.4 0.1 0.00057 18.6 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|20089423|ref|NP_615498.1| - 7.6e-05 21.9 0.0 0.33 10.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Methyltransf_23 PF13489.1 gi|20089424|ref|NP_615499.1| - 5.1e-16 58.7 0.0 6.5e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089424|ref|NP_615499.1| - 1.3e-15 57.6 0.0 2.2e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089424|ref|NP_615499.1| - 1.1e-12 48.1 0.0 1.8e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089424|ref|NP_615499.1| - 7.4e-09 35.9 0.0 1.2e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089424|ref|NP_615499.1| - 3.6e-08 33.1 0.0 4.8e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089424|ref|NP_615499.1| - 1.5e-05 25.5 0.0 2.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20089424|ref|NP_615499.1| - 0.0003 19.9 0.0 0.00038 19.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|20089424|ref|NP_615499.1| - 0.00033 20.6 0.0 0.00053 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089424|ref|NP_615499.1| - 0.00035 19.7 0.0 0.00049 19.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|20089424|ref|NP_615499.1| - 0.054 12.8 0.0 0.083 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|20089424|ref|NP_615499.1| - 0.15 11.4 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW BofA PF07441.6 gi|20089425|ref|NP_615500.1| - 3.6e-08 33.2 20.1 4.4e-08 32.9 13.9 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA ABC2_membrane PF01061.19 gi|20089425|ref|NP_615500.1| - 1.3 8.1 11.7 1.6 7.8 8.1 1.2 1 0 0 1 1 1 0 ABC-2 type transporter Nuc_deoxyrib_tr PF05014.10 gi|20089426|ref|NP_615501.1| - 4.3e-09 36.2 0.0 5.1e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Peptidase_U32 PF01136.14 gi|20089427|ref|NP_615502.1| - 1e-122 407.5 0.0 1.6e-85 285.7 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|20089427|ref|NP_615502.1| - 1.3e-32 112.4 0.1 5.1e-32 110.4 0.1 2.0 2 0 0 2 2 2 1 Collagenase Dus PF01207.12 gi|20089427|ref|NP_615502.1| - 0.017 13.9 0.0 0.2 10.4 0.0 2.5 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) Radical_SAM PF04055.16 gi|20089427|ref|NP_615502.1| - 0.095 12.8 0.0 2.3 8.3 0.0 2.8 3 0 0 3 3 3 0 Radical SAM superfamily MazG PF03819.12 gi|20089429|ref|NP_615504.1| - 4.3e-18 65.0 0.0 5.2e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|20089429|ref|NP_615504.1| - 0.00013 22.1 0.2 0.00015 21.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase His_biosynth PF00977.16 gi|20089430|ref|NP_615505.1| - 4.6e-88 294.3 0.2 5.3e-88 294.1 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|20089430|ref|NP_615505.1| - 1.2e-05 24.5 0.1 0.077 12.0 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|20089430|ref|NP_615505.1| - 0.00012 21.3 0.6 0.27 10.3 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|20089430|ref|NP_615505.1| - 0.00023 20.3 0.1 0.27 10.3 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI Dus PF01207.12 gi|20089430|ref|NP_615505.1| - 0.00024 20.0 0.0 0.0045 15.8 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|20089430|ref|NP_615505.1| - 0.0008 18.7 0.1 0.0026 17.0 0.1 1.9 2 1 0 2 2 2 1 PcrB family IMPDH PF00478.20 gi|20089430|ref|NP_615505.1| - 0.00098 18.1 0.1 0.58 8.9 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|20089430|ref|NP_615505.1| - 0.0013 17.7 0.0 1.1 8.1 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|20089430|ref|NP_615505.1| - 0.14 11.1 0.2 1 8.3 0.1 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DNase-RNase PF02577.9 gi|20089431|ref|NP_615506.1| - 1.5e-40 137.6 0.1 1.7e-40 137.3 0.1 1.1 1 0 0 1 1 1 1 Bifunctional nuclease PCMT PF01135.14 gi|20089432|ref|NP_615507.1| - 8.7e-72 241.0 0.0 1e-71 240.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|20089432|ref|NP_615507.1| - 5.4e-13 48.8 0.0 1e-12 47.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089432|ref|NP_615507.1| - 1.1e-09 38.8 0.0 3.1e-09 37.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain GCD14 PF08704.5 gi|20089432|ref|NP_615507.1| - 5.2e-08 32.7 0.0 8.1e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|20089432|ref|NP_615507.1| - 1.4e-05 25.1 0.0 6.5e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089432|ref|NP_615507.1| - 1.9e-05 24.0 0.0 3.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.12 gi|20089432|ref|NP_615507.1| - 2.4e-05 23.5 0.0 9.1e-05 21.5 0.0 1.8 2 0 0 2 2 2 1 O-methyltransferase Ubie_methyltran PF01209.13 gi|20089432|ref|NP_615507.1| - 3.5e-05 23.0 0.1 0.00024 20.3 0.0 2.2 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Fibrillarin PF01269.12 gi|20089432|ref|NP_615507.1| - 7.6e-05 21.7 0.0 0.00013 20.9 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin Methyltransf_23 PF13489.1 gi|20089432|ref|NP_615507.1| - 0.00019 21.1 0.0 0.00089 19.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20089432|ref|NP_615507.1| - 0.00042 19.4 0.0 0.00061 18.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|20089432|ref|NP_615507.1| - 0.00066 20.4 0.0 0.0048 17.7 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20089432|ref|NP_615507.1| - 0.0058 15.7 0.0 0.0079 15.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|20089432|ref|NP_615507.1| - 0.0061 15.6 0.1 0.015 14.3 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|20089432|ref|NP_615507.1| - 0.011 16.2 0.0 0.069 13.6 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|20089432|ref|NP_615507.1| - 0.044 12.9 0.0 0.055 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF938 PF06080.7 gi|20089432|ref|NP_615507.1| - 0.086 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.14 gi|20089433|ref|NP_615508.1| - 5.7e-71 238.3 0.0 7e-71 238.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|20089433|ref|NP_615508.1| - 1.2e-12 47.6 0.0 1.8e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089433|ref|NP_615508.1| - 1.1e-09 38.8 0.0 1.9e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|20089433|ref|NP_615508.1| - 1.4e-06 28.0 0.0 4.1e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|20089433|ref|NP_615508.1| - 1.8e-05 23.9 0.0 2.8e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|20089433|ref|NP_615508.1| - 3.2e-05 23.0 0.3 0.00015 20.8 0.0 2.1 3 0 0 3 3 3 1 O-methyltransferase Fibrillarin PF01269.12 gi|20089433|ref|NP_615508.1| - 0.0001 21.3 0.3 0.00017 20.5 0.0 1.5 2 0 0 2 2 2 1 Fibrillarin MTS PF05175.9 gi|20089433|ref|NP_615508.1| - 0.00016 21.1 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20089433|ref|NP_615508.1| - 0.00024 21.1 0.0 0.00047 20.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089433|ref|NP_615508.1| - 0.0012 18.0 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|20089433|ref|NP_615508.1| - 0.0018 18.0 0.0 0.0033 17.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089433|ref|NP_615508.1| - 0.0043 17.5 0.0 0.022 15.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|20089433|ref|NP_615508.1| - 0.018 15.8 0.0 0.075 13.8 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|20089433|ref|NP_615508.1| - 0.14 11.1 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase zinc_ribbon_5 PF13719.1 gi|20089434|ref|NP_615509.1| - 0.00021 20.7 0.8 0.00052 19.5 0.5 1.7 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20089434|ref|NP_615509.1| - 0.00039 20.0 0.9 0.001 18.7 0.6 1.8 1 0 0 1 1 1 1 zinc-ribbon domain DUF2387 PF09526.5 gi|20089434|ref|NP_615509.1| - 0.0017 18.2 1.4 0.0047 16.8 1.0 1.7 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|20089434|ref|NP_615509.1| - 0.017 15.4 0.3 0.043 14.1 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.8 gi|20089434|ref|NP_615509.1| - 0.18 11.3 3.6 0.66 9.5 2.5 2.0 1 1 0 1 1 1 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|20089434|ref|NP_615509.1| - 1.2 9.2 4.0 7.5 6.5 2.9 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|20089435|ref|NP_615510.1| - 0.0026 17.2 0.2 0.0049 16.4 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20089435|ref|NP_615510.1| - 0.0052 16.4 0.5 0.012 15.2 0.4 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Elf1 PF05129.8 gi|20089435|ref|NP_615510.1| - 0.054 13.1 0.8 0.07 12.8 0.1 1.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1 PF03811.8 gi|20089435|ref|NP_615510.1| - 0.11 11.9 0.1 0.11 11.9 0.1 2.0 2 0 0 2 2 2 0 InsA N-terminal domain CTP-dep_RFKase PF01982.11 gi|20089436|ref|NP_615511.1| - 4.4e-46 155.4 0.0 7.2e-46 154.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_12 PF08461.5 gi|20089436|ref|NP_615511.1| - 0.024 14.3 1.5 0.072 12.8 0.1 2.3 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain HxlR PF01638.12 gi|20089436|ref|NP_615511.1| - 0.1 12.2 0.7 0.27 10.9 0.1 2.1 3 0 0 3 3 3 0 HxlR-like helix-turn-helix DHBP_synthase PF00926.14 gi|20089437|ref|NP_615512.1| - 1.9e-65 219.7 0.0 2.2e-65 219.5 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Cation_efflux PF01545.16 gi|20089438|ref|NP_615513.1| - 3.6e-59 200.1 4.6 4.5e-59 199.8 3.2 1.0 1 0 0 1 1 1 1 Cation efflux family AA_permease_2 PF13520.1 gi|20089438|ref|NP_615513.1| - 0.00037 19.1 3.9 0.00051 18.6 2.7 1.1 1 0 0 1 1 1 1 Amino acid permease Chorismate_synt PF01264.16 gi|20089439|ref|NP_615514.1| - 1.2e-150 500.8 0.1 1.3e-150 500.6 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase MEDS PF14417.1 gi|20089440|ref|NP_615515.1| - 1.5e-89 298.1 3.2 1.4e-88 294.9 0.0 3.4 4 0 0 4 4 4 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20089440|ref|NP_615515.1| - 8.2e-70 231.7 0.0 2.5e-18 66.3 0.0 6.7 6 0 0 6 6 6 5 PAS domain PAS PF00989.19 gi|20089440|ref|NP_615515.1| - 9.1e-57 189.7 0.0 4.3e-16 58.7 0.0 7.1 6 1 0 6 6 6 6 PAS fold PAS_4 PF08448.5 gi|20089440|ref|NP_615515.1| - 5.7e-48 161.5 0.3 6.4e-12 45.4 0.0 6.9 7 0 0 7 7 6 5 PAS fold PAS_3 PF08447.6 gi|20089440|ref|NP_615515.1| - 1.7e-45 152.9 0.0 1.4e-19 69.9 0.1 5.8 5 0 0 5 5 5 5 PAS fold HisKA_2 PF07568.7 gi|20089440|ref|NP_615515.1| - 2e-34 117.2 2.6 2e-34 117.2 1.8 2.6 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|20089440|ref|NP_615515.1| - 1.5e-33 113.4 0.0 2e-09 36.9 0.0 6.5 6 0 0 6 6 6 4 PAS domain GAF_2 PF13185.1 gi|20089440|ref|NP_615515.1| - 3.8e-16 59.9 0.0 2.8e-15 57.0 0.0 2.6 3 0 0 3 3 2 1 GAF domain HATPase_c PF02518.21 gi|20089440|ref|NP_615515.1| - 1.8e-12 46.9 0.1 4.7e-12 45.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|20089440|ref|NP_615515.1| - 2.2e-10 40.5 1.2 0.0028 17.6 0.0 7.0 7 1 0 7 7 7 2 PAS fold HATPase_c_2 PF13581.1 gi|20089440|ref|NP_615515.1| - 5.8e-06 26.0 0.0 1.4e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|20089440|ref|NP_615515.1| - 7.1e-06 26.2 0.0 0.00023 21.3 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|20089440|ref|NP_615515.1| - 8.2e-06 26.0 0.0 1 9.6 0.0 4.9 4 0 0 4 4 4 2 PAS domain HWE_HK PF07536.9 gi|20089440|ref|NP_615515.1| - 0.00051 20.4 0.5 0.00051 20.4 0.3 2.1 2 0 0 2 2 1 1 HWE histidine kinase GAF_3 PF13492.1 gi|20089440|ref|NP_615515.1| - 0.0022 18.0 0.0 0.036 14.1 0.0 2.9 3 0 0 3 3 3 1 GAF domain MEDS PF14417.1 gi|20089441|ref|NP_615516.1| - 5.4e-82 273.4 0.0 4.3e-80 267.3 0.0 3.0 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PocR PF10114.4 gi|20089441|ref|NP_615516.1| - 1.1e-70 236.3 1.4 3.6e-70 234.5 0.0 2.3 2 0 0 2 2 2 1 Sensory domain found in PocR PAS_9 PF13426.1 gi|20089441|ref|NP_615516.1| - 3.3e-66 220.2 0.1 6.4e-20 71.4 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.6 gi|20089441|ref|NP_615516.1| - 1.6e-61 204.3 4.0 2.3e-20 72.4 0.0 6.3 7 0 0 7 7 6 5 PAS fold PAS PF00989.19 gi|20089441|ref|NP_615516.1| - 2.6e-47 159.2 0.0 5.7e-16 58.3 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|20089441|ref|NP_615516.1| - 2.3e-46 156.3 0.0 1.7e-14 53.7 0.0 5.5 5 0 0 5 5 5 4 PAS fold HisKA_2 PF07568.7 gi|20089441|ref|NP_615516.1| - 2.4e-32 110.6 0.7 2.4e-32 110.6 0.5 2.9 3 0 0 3 3 3 1 Histidine kinase PAS_8 PF13188.1 gi|20089441|ref|NP_615516.1| - 2.8e-19 68.2 0.0 2.7e-08 33.3 0.0 5.3 5 0 0 5 5 5 4 PAS domain HATPase_c PF02518.21 gi|20089441|ref|NP_615516.1| - 9.9e-13 47.7 0.1 2.9e-12 46.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|20089441|ref|NP_615516.1| - 2.1e-08 34.0 0.0 0.59 10.1 0.0 5.7 5 0 0 5 5 5 2 PAS domain HATPase_c_2 PF13581.1 gi|20089441|ref|NP_615516.1| - 1.1e-05 25.2 0.0 3.5e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|20089441|ref|NP_615516.1| - 0.00012 22.0 2.1 2.1 8.3 0.0 5.8 6 1 0 6 6 6 1 PAS fold HWE_HK PF07536.9 gi|20089441|ref|NP_615516.1| - 0.0063 16.9 0.0 0.026 14.9 0.0 2.2 1 0 0 1 1 1 1 HWE histidine kinase OEP PF02321.13 gi|20089441|ref|NP_615516.1| - 9 5.8 8.1 3.2 7.2 1.8 2.4 2 0 0 2 2 2 0 Outer membrane efflux protein DUF2628 PF10947.3 gi|20089443|ref|NP_615518.1| - 0.088 12.6 0.6 6.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) DUF3160 PF11369.3 gi|20089445|ref|NP_615520.1| - 6.1e-283 939.9 4.6 7e-283 939.7 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.3 gi|20089446|ref|NP_615521.1| - 2e-279 928.3 0.7 2.2e-279 928.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.3 gi|20089447|ref|NP_615522.1| - 6.2e-283 939.9 5.3 7.2e-283 939.6 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.3 gi|20089449|ref|NP_615524.1| - 5.7e-284 943.3 9.7 6.6e-284 943.1 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.3 gi|20089450|ref|NP_615525.1| - 2e-285 948.1 12.9 2.4e-285 947.8 8.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) Mfa2 PF08842.5 gi|20089451|ref|NP_615526.1| - 0.016 14.6 0.1 0.028 13.7 0.1 1.4 1 0 0 1 1 1 0 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 DUF1131 PF06572.7 gi|20089451|ref|NP_615526.1| - 0.13 11.6 0.1 0.67 9.4 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1131) DUF4367 PF14285.1 gi|20089452|ref|NP_615527.1| - 2.6e-08 33.3 2.4 2.6e-08 33.3 1.7 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) DUF1329 PF07044.6 gi|20089452|ref|NP_615527.1| - 4e-05 22.7 0.0 0.0001 21.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1329) LolA PF03548.10 gi|20089452|ref|NP_615527.1| - 6.2e-05 22.6 0.0 0.22 11.1 0.0 2.3 2 0 0 2 2 2 2 Outer membrane lipoprotein carrier protein LolA DUF2092 PF09865.4 gi|20089452|ref|NP_615527.1| - 0.12 11.4 0.0 5.9 5.8 0.0 2.2 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2092) Peptidase_C39_2 PF13529.1 gi|20089453|ref|NP_615528.1| - 3.5e-17 63.1 0.8 7.1e-17 62.1 0.6 1.6 1 0 0 1 1 1 1 Peptidase_C39 like family HPIH PF13323.1 gi|20089455|ref|NP_615530.1| - 0.068 12.8 0.3 0.068 12.8 0.2 1.9 2 0 0 2 2 2 0 N-terminal domain with HPIH motif VIT1 PF01988.14 gi|20089456|ref|NP_615531.1| - 2.8 7.3 6.2 4.3 6.7 4.3 1.4 1 0 0 1 1 1 0 VIT family DUF4131 PF13567.1 gi|20089460|ref|NP_615535.1| - 0.036 13.4 7.1 0.89 8.9 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Ferric_reduct PF01794.14 gi|20089460|ref|NP_615535.1| - 2.1 8.4 6.1 4.4 7.3 4.0 1.9 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF307 PF03733.8 gi|20089460|ref|NP_615535.1| - 4 7.9 17.7 0.46 10.9 1.8 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF307) Radical_SAM PF04055.16 gi|20089462|ref|NP_615537.1| - 4.2e-24 85.5 0.1 1.9e-23 83.4 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20089462|ref|NP_615537.1| - 3.4e-10 40.1 0.0 6.6e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|20089462|ref|NP_615537.1| - 5e-09 36.3 1.6 9.7e-09 35.4 1.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|20089462|ref|NP_615537.1| - 5.9e-09 35.9 0.0 1.6e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Arif-1 PF06770.6 gi|20089462|ref|NP_615537.1| - 0.0054 16.1 0.9 0.0072 15.7 0.0 1.6 2 0 0 2 2 2 1 Actin-rearrangement-inducing factor (Arif-1) AP_endonuc_2 PF01261.19 gi|20089462|ref|NP_615537.1| - 0.027 13.7 0.0 0.34 10.1 0.0 2.3 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Hydrolase_6 PF13344.1 gi|20089462|ref|NP_615537.1| - 0.098 12.5 0.0 4.1 7.3 0.0 2.8 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase PARG_cat PF05028.9 gi|20089462|ref|NP_615537.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 Poly (ADP-ribose) glycohydrolase (PARG) HTH_AsnC-type PF13404.1 gi|20089463|ref|NP_615538.1| - 1.7e-09 37.0 0.0 3.4e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|20089463|ref|NP_615538.1| - 0.00055 19.2 2.7 0.0058 15.9 1.9 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|20089463|ref|NP_615538.1| - 0.028 13.9 0.2 0.067 12.7 0.2 1.6 1 1 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.14 gi|20089463|ref|NP_615538.1| - 0.048 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20089463|ref|NP_615538.1| - 0.069 12.9 0.1 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|20089464|ref|NP_615539.1| - 3.2e-06 26.5 0.0 9.1e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|20089464|ref|NP_615539.1| - 0.00083 18.7 0.4 0.094 12.1 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Aldo_ket_red PF00248.16 gi|20089464|ref|NP_615539.1| - 0.018 13.9 0.0 0.018 13.9 0.0 1.3 1 1 0 1 1 1 0 Aldo/keto reductase family MarR_2 PF12802.2 gi|20089464|ref|NP_615539.1| - 0.032 13.8 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 MarR family Picorna_P3A PF06363.6 gi|20089464|ref|NP_615539.1| - 0.056 13.4 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Picornaviridae P3A protein DDRGK PF09756.4 gi|20089464|ref|NP_615539.1| - 0.062 12.7 0.0 0.096 12.0 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_20 PF12840.2 gi|20089464|ref|NP_615539.1| - 0.081 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain IF2_N PF04760.10 gi|20089464|ref|NP_615539.1| - 0.089 12.4 0.0 0.21 11.2 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HEPN PF05168.9 gi|20089464|ref|NP_615539.1| - 0.12 12.2 0.0 0.58 10.0 0.0 1.9 2 0 0 2 2 2 0 HEPN domain AsnC_trans_reg PF01037.16 gi|20089464|ref|NP_615539.1| - 0.12 12.0 0.0 0.52 10.0 0.0 2.0 2 0 0 2 2 2 0 AsnC family FaeA PF04703.7 gi|20089464|ref|NP_615539.1| - 0.14 12.2 0.0 0.78 9.9 0.0 1.9 2 0 0 2 2 2 0 FaeA-like protein HTH_Tnp_ISL3 PF13542.1 gi|20089464|ref|NP_615539.1| - 0.15 11.2 0.0 0.6 9.3 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 NAD_binding_7 PF13241.1 gi|20089465|ref|NP_615540.1| - 1.9e-18 66.6 0.0 3e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|20089465|ref|NP_615540.1| - 0.09 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain GlutR_N PF05201.10 gi|20089466|ref|NP_615541.1| - 4.6e-40 136.6 0.0 1.2e-39 135.2 0.0 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|20089466|ref|NP_615541.1| - 4.2e-38 130.5 0.1 4.2e-38 130.5 0.1 2.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|20089466|ref|NP_615541.1| - 9.2e-24 83.3 1.9 2.1e-23 82.1 1.3 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|20089466|ref|NP_615541.1| - 1e-05 24.7 0.1 2.2e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|20089466|ref|NP_615541.1| - 3.9e-05 24.0 0.1 3.9e-05 24.0 0.1 2.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|20089466|ref|NP_615541.1| - 0.00039 19.5 0.1 0.0007 18.6 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|20089466|ref|NP_615541.1| - 0.0013 18.9 0.0 0.0065 16.7 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding CPSase_L_chain PF00289.17 gi|20089466|ref|NP_615541.1| - 0.0024 17.9 0.1 0.0056 16.7 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF2124 PF09897.4 gi|20089466|ref|NP_615541.1| - 0.01 15.5 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) UDPG_MGDP_dh_N PF03721.9 gi|20089466|ref|NP_615541.1| - 0.016 14.5 1.4 2.5 7.4 0.3 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|20089466|ref|NP_615541.1| - 0.021 13.9 0.0 2.4 7.2 0.0 2.5 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ThiF PF00899.16 gi|20089466|ref|NP_615541.1| - 0.023 14.5 2.7 0.026 14.3 0.1 2.4 2 1 0 2 2 2 0 ThiF family adh_short PF00106.20 gi|20089466|ref|NP_615541.1| - 0.037 13.9 0.2 0.16 11.8 0.1 2.1 1 1 1 2 2 2 0 short chain dehydrogenase TrkA_N PF02254.13 gi|20089466|ref|NP_615541.1| - 0.17 11.8 4.4 0.12 12.3 0.2 2.7 2 1 0 2 2 2 0 TrkA-N domain ALAD PF00490.16 gi|20089467|ref|NP_615542.1| - 5e-148 492.2 0.1 5.6e-148 492.1 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase rve PF00665.21 gi|20089468|ref|NP_615543.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089468|ref|NP_615543.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20089468|ref|NP_615543.1| - 6.8e-05 22.9 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20089468|ref|NP_615543.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20089468|ref|NP_615543.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20089468|ref|NP_615543.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Trypan_PARP PF05887.6 gi|20089469|ref|NP_615544.1| - 0.0018 18.1 1.2 0.0022 17.8 0.8 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Aminotran_3 PF00202.16 gi|20089470|ref|NP_615545.1| - 5.9e-68 229.1 0.0 8.1e-68 228.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.15 gi|20089471|ref|NP_615546.1| - 1.6e-68 229.8 0.0 2e-68 229.5 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|20089471|ref|NP_615546.1| - 1.9e-13 50.2 0.0 4.7e-13 49.0 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DHO_dh PF01180.16 gi|20089472|ref|NP_615547.1| - 1.4e-64 217.9 0.4 1.7e-64 217.6 0.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|20089472|ref|NP_615547.1| - 4.6e-11 42.1 0.5 3.2e-06 26.1 0.1 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|20089472|ref|NP_615547.1| - 7.9e-05 21.9 6.3 0.00019 20.6 4.4 1.7 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|20089472|ref|NP_615547.1| - 0.00014 21.1 1.0 0.00024 20.4 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|20089472|ref|NP_615547.1| - 0.012 14.8 1.5 0.044 13.0 0.2 2.1 2 0 0 2 2 2 0 PcrB family DUF561 PF04481.7 gi|20089472|ref|NP_615547.1| - 0.053 12.4 0.9 0.077 11.9 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) IGPS PF00218.16 gi|20089472|ref|NP_615547.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|20089472|ref|NP_615547.1| - 1.8 7.5 5.9 0.41 9.6 0.3 2.5 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG NAD_binding_1 PF00175.16 gi|20089473|ref|NP_615548.1| - 4.5e-13 49.7 0.0 7.2e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|20089473|ref|NP_615548.1| - 5.1e-12 45.0 3.8 9.3e-12 44.2 2.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|20089473|ref|NP_615548.1| - 6.3e-05 23.0 0.0 0.0002 21.4 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|20089473|ref|NP_615548.1| - 0.18 11.7 0.1 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 Ferric reductase NAD binding domain FAA_hydrolase PF01557.13 gi|20089474|ref|NP_615549.1| - 8.6e-70 234.5 0.0 1.3e-69 234.0 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrmB PF01978.14 gi|20089475|ref|NP_615550.1| - 0.0012 18.5 0.2 0.003 17.2 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB RepL PF05732.6 gi|20089475|ref|NP_615550.1| - 0.017 14.3 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_24 PF13412.1 gi|20089475|ref|NP_615550.1| - 0.018 14.3 0.8 0.027 13.8 0.1 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20089475|ref|NP_615550.1| - 0.019 14.6 0.1 0.037 13.7 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20089475|ref|NP_615550.1| - 0.027 14.2 0.1 0.037 13.8 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|20089475|ref|NP_615550.1| - 0.05 13.7 0.0 0.071 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|20089475|ref|NP_615550.1| - 0.097 12.3 0.1 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.4 gi|20089475|ref|NP_615550.1| - 0.1 12.6 0.0 0.12 12.4 0.0 1.3 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_12 PF08461.5 gi|20089475|ref|NP_615550.1| - 0.11 12.2 0.2 0.24 11.1 0.0 1.9 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain FaeA PF04703.7 gi|20089475|ref|NP_615550.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein RNA_pol_Rpc34 PF05158.7 gi|20089475|ref|NP_615550.1| - 0.14 11.2 0.1 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit tRNA-synt_1c PF00749.16 gi|20089476|ref|NP_615551.1| - 1.1e-64 218.0 0.0 1.4e-64 217.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|20089476|ref|NP_615551.1| - 6.1e-26 91.1 0.0 1.9e-25 89.5 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF1087 PF06465.8 gi|20089476|ref|NP_615551.1| - 0.035 14.0 0.1 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1087) NosD PF05048.8 gi|20089477|ref|NP_615552.1| - 1.4e-43 148.7 34.8 3e-43 147.6 24.1 1.5 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20089477|ref|NP_615552.1| - 5.6e-13 48.9 27.1 5.6e-13 48.9 18.8 1.8 2 1 0 2 2 2 1 Right handed beta helix region Pectinesterase PF01095.14 gi|20089477|ref|NP_615552.1| - 0.0019 16.8 0.1 0.003 16.1 0.1 1.3 1 0 0 1 1 1 1 Pectinesterase PRTase_1 PF11202.3 gi|20089478|ref|NP_615553.1| - 0.14 11.1 0.0 0.16 10.9 0.0 1.0 1 0 0 1 1 1 0 Phosphoribosyl transferase (PRTase) tRNA_anti-codon PF01336.20 gi|20089479|ref|NP_615554.1| - 1.7e-07 30.9 0.1 0.22 11.3 0.0 3.9 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain CTC1 PF15489.1 gi|20089479|ref|NP_615554.1| - 0.067 10.5 0.0 0.094 10.0 0.0 1.1 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 2-Hacid_dh_C PF02826.14 gi|20089481|ref|NP_615556.1| - 1.8e-60 203.1 0.0 2.9e-60 202.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|20089481|ref|NP_615556.1| - 5.1e-41 139.2 1.0 5e-40 136.0 0.2 2.3 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|20089481|ref|NP_615556.1| - 4.1e-06 26.1 0.3 2.7e-05 23.5 0.0 2.6 2 0 0 2 2 2 1 ACT domain IlvN PF07991.7 gi|20089481|ref|NP_615556.1| - 1.4e-05 24.5 0.1 4.5e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|20089481|ref|NP_615556.1| - 0.0027 17.5 0.7 0.014 15.2 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DUF2240 PF09999.4 gi|20089482|ref|NP_615557.1| - 1e-56 190.3 0.0 1.2e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) TPP_enzyme_N PF02776.13 gi|20089483|ref|NP_615558.1| - 3.6e-32 111.2 0.1 8.8e-32 109.9 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|20089483|ref|NP_615558.1| - 4.5e-20 71.8 0.0 2.1e-19 69.6 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|20089483|ref|NP_615558.1| - 7.5e-20 71.0 0.0 3.8e-19 68.7 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ribosomal_L18e PF00828.14 gi|20089484|ref|NP_615559.1| - 9.6e-16 58.3 0.0 1.8e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Dimerisation PF08100.6 gi|20089484|ref|NP_615559.1| - 0.13 12.0 0.0 0.75 9.6 0.0 2.1 2 0 0 2 2 2 0 Dimerisation domain Ribosomal_L13 PF00572.13 gi|161484940|ref|NP_615560.2| - 3.9e-25 88.3 0.0 4.7e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|20089486|ref|NP_615561.1| - 4.9e-33 113.9 0.1 5.6e-33 113.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|20089487|ref|NP_615562.1| - 1.2e-28 98.8 0.3 1.3e-28 98.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.17 gi|20089488|ref|NP_615563.1| - 1e-18 66.8 0.1 1.1e-18 66.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.15 gi|20089489|ref|NP_615564.1| - 1e-37 129.4 0.0 4.5e-19 68.5 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|20089489|ref|NP_615564.1| - 0.029 13.0 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Peripla_BP_4 PF13407.1 gi|20089489|ref|NP_615564.1| - 0.15 11.4 0.1 0.24 10.7 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Memo PF01875.12 gi|20089490|ref|NP_615565.1| - 5.9e-79 264.8 0.0 6.8e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|20089490|ref|NP_615565.1| - 0.0016 17.4 0.0 0.0023 16.9 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LeuA_dimer PF08502.5 gi|20089490|ref|NP_615565.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain GHMP_kinases_N PF00288.21 gi|20089491|ref|NP_615566.1| - 6e-18 64.6 0.6 6e-18 64.6 0.4 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|20089491|ref|NP_615566.1| - 1.3e-09 38.1 0.3 2.9e-09 36.9 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|20089491|ref|NP_615566.1| - 0.066 12.4 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Galactokinase galactose-binding signature DUF4266 PF14086.1 gi|20089491|ref|NP_615566.1| - 0.87 10.1 7.1 0.19 12.2 2.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4266) AA_kinase PF00696.23 gi|20089492|ref|NP_615567.1| - 4.4e-37 127.9 0.0 5e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|20089493|ref|NP_615568.1| - 1.3e-33 116.3 0.0 6.9e-22 77.7 0.0 2.3 1 1 1 3 3 3 2 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|20089493|ref|NP_615568.1| - 6e-05 22.1 1.4 0.0058 15.6 0.0 2.5 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|20089493|ref|NP_615568.1| - 0.00013 20.9 5.1 0.0054 15.6 0.2 3.3 4 0 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|20089493|ref|NP_615568.1| - 0.00031 20.0 0.9 0.0012 18.0 0.1 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|20089493|ref|NP_615568.1| - 0.002 17.0 0.8 0.0036 16.2 0.2 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|20089493|ref|NP_615568.1| - 0.03 13.6 1.0 0.8 8.9 0.1 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein Lactamase_B PF00753.22 gi|20089494|ref|NP_615569.1| - 2.3e-17 63.2 0.1 2.3e-17 63.2 0.1 1.8 2 1 1 3 3 3 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|20089494|ref|NP_615569.1| - 1.1e-09 37.8 0.4 2.7e-09 36.7 0.3 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|20089494|ref|NP_615569.1| - 1.5e-07 31.1 0.1 1.3e-06 28.1 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain polyprenyl_synt PF00348.12 gi|20089495|ref|NP_615570.1| - 2.5e-65 219.9 0.0 2.9e-65 219.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF1131 PF06572.7 gi|20089495|ref|NP_615570.1| - 0.13 11.7 0.0 0.52 9.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1131) tRNA_synt_1c_R2 PF04557.10 gi|20089496|ref|NP_615571.1| - 0.71 10.5 6.4 0.82 10.4 4.5 1.2 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 YqfQ PF14181.1 gi|20089496|ref|NP_615571.1| - 9.1 6.2 7.9 10 6.1 5.5 1.1 1 0 0 1 1 1 0 YqfQ-like protein PEP-utilizers_C PF02896.13 gi|20089497|ref|NP_615572.1| - 6.4e-101 337.1 0.1 9.7e-101 336.5 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|20089497|ref|NP_615572.1| - 5e-65 219.7 0.0 2.9e-64 217.1 0.0 2.1 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|20089497|ref|NP_615572.1| - 1.5e-22 78.9 0.8 3.4e-22 77.7 0.6 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|20089497|ref|NP_615572.1| - 0.1 12.3 1.2 0.91 9.3 0.1 2.9 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Gar1 PF04410.9 gi|20089498|ref|NP_615573.1| - 4.5e-08 32.6 0.0 4.5e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|20089499|ref|NP_615574.1| - 2.7e-47 158.4 2.6 3.7e-24 84.3 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|20089499|ref|NP_615574.1| - 6e-19 67.0 1.4 1.3e-18 66.0 0.6 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|20089499|ref|NP_615574.1| - 0.00023 20.7 0.7 0.00054 19.5 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Sigma70_r4 PF04545.11 gi|20089499|ref|NP_615574.1| - 0.0031 16.7 0.5 0.017 14.4 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_N PF00134.18 gi|20089499|ref|NP_615574.1| - 0.015 14.8 0.0 2.6 7.6 0.0 2.3 1 1 1 2 2 2 0 Cyclin, N-terminal domain zf-ribbon_3 PF13248.1 gi|20089499|ref|NP_615574.1| - 0.017 14.3 0.4 0.017 14.3 0.3 1.9 2 0 0 2 2 1 0 zinc-ribbon domain HTH_AsnC-type PF13404.1 gi|20089499|ref|NP_615574.1| - 0.02 14.3 0.2 0.084 12.4 0.1 2.1 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|20089499|ref|NP_615574.1| - 0.028 13.8 1.9 0.11 11.9 1.3 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|20089499|ref|NP_615574.1| - 0.029 14.6 1.0 0.29 11.4 0.3 2.5 2 0 0 2 2 2 0 Restriction alleviation protein Lar Cyclin_C PF02984.14 gi|20089499|ref|NP_615574.1| - 0.037 13.9 0.0 7.2 6.5 0.0 2.5 2 0 0 2 2 2 0 Cyclin, C-terminal domain RPA_interact_C PF14768.1 gi|20089499|ref|NP_615574.1| - 0.039 14.3 0.1 3.6 8.0 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_24 PF13412.1 gi|20089499|ref|NP_615574.1| - 0.056 12.8 0.1 0.36 10.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FYDLN_acid PF09538.5 gi|20089499|ref|NP_615574.1| - 0.06 13.9 0.1 0.17 12.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DZR PF12773.2 gi|20089499|ref|NP_615574.1| - 0.083 12.7 1.5 0.3 10.9 0.3 2.2 2 0 0 2 2 2 0 Double zinc ribbon HTH_31 PF13560.1 gi|20089499|ref|NP_615574.1| - 0.37 11.0 3.7 3.3 7.9 0.0 3.3 3 1 1 4 4 3 0 Helix-turn-helix domain Ribosomal_S27e PF01667.12 gi|20089499|ref|NP_615574.1| - 0.46 10.0 1.8 0.48 10.0 0.1 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 Zn_Tnp_IS1595 PF12760.2 gi|20089499|ref|NP_615574.1| - 1 9.1 4.5 0.19 11.5 0.3 2.0 2 0 0 2 2 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20089499|ref|NP_615574.1| - 4.5 7.3 7.3 0.59 10.1 0.4 2.8 2 1 1 3 3 3 0 Zinc ribbon domain HTH_23 PF13384.1 gi|20089499|ref|NP_615574.1| - 5.8 6.6 6.7 1 9.1 0.1 3.2 3 0 0 3 3 3 0 Homeodomain-like domain LysE PF01810.13 gi|20089500|ref|NP_615575.1| - 4.1e-28 97.9 16.5 4.8e-28 97.7 11.4 1.1 1 0 0 1 1 1 1 LysE type translocator DUF4064 PF13273.1 gi|20089500|ref|NP_615575.1| - 0.0082 16.2 7.2 3.3 7.8 3.9 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF4064) DUF2165 PF09933.4 gi|20089500|ref|NP_615575.1| - 5 6.8 8.3 17 5.0 2.0 2.4 2 0 0 2 2 2 0 Predicted small integral membrane protein (DUF2165) DUF2157 PF09925.4 gi|20089501|ref|NP_615576.1| - 0.09 12.3 1.8 0.1 12.1 1.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF457 PF04307.9 gi|20089501|ref|NP_615576.1| - 0.095 12.0 1.4 0.1 11.9 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) LAB_N PF07578.6 gi|20089501|ref|NP_615576.1| - 0.11 12.4 2.1 0.15 11.9 1.4 1.3 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain DUF420 PF04238.7 gi|20089501|ref|NP_615576.1| - 0.12 12.3 1.2 0.14 12.1 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF420) 7TMR-DISM_7TM PF07695.6 gi|20089501|ref|NP_615576.1| - 0.13 11.8 4.9 0.14 11.8 3.4 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling CD20 PF04103.10 gi|20089501|ref|NP_615576.1| - 0.38 10.6 2.1 0.55 10.1 1.5 1.2 1 0 0 1 1 1 0 CD20-like family DUF4131 PF13567.1 gi|20089501|ref|NP_615576.1| - 0.96 8.8 3.9 1 8.7 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Met_10 PF02475.11 gi|20089502|ref|NP_615577.1| - 4.8e-64 215.6 0.0 6e-64 215.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|20089502|ref|NP_615577.1| - 8.6e-11 42.4 0.0 7.5e-10 39.3 0.0 2.2 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089502|ref|NP_615577.1| - 6.1e-10 38.8 0.0 1.3e-09 37.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089502|ref|NP_615577.1| - 3.8e-09 36.1 0.1 8.3e-09 35.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20089502|ref|NP_615577.1| - 3.8e-07 30.1 0.0 2.3e-06 27.6 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|20089502|ref|NP_615577.1| - 4.3e-06 26.0 0.0 6.6e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|20089502|ref|NP_615577.1| - 6.6e-06 25.6 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|20089502|ref|NP_615577.1| - 3e-05 23.6 0.0 4.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|20089502|ref|NP_615577.1| - 5.6e-05 22.2 0.0 7.4e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase RrnaAD PF00398.15 gi|20089502|ref|NP_615577.1| - 6.4e-05 22.1 0.0 9.5e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|20089502|ref|NP_615577.1| - 0.00065 18.8 0.0 0.0013 17.7 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase ADH_zinc_N PF00107.21 gi|20089502|ref|NP_615577.1| - 0.002 17.6 0.0 0.0054 16.2 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_23 PF13489.1 gi|20089502|ref|NP_615577.1| - 0.0027 17.4 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|20089502|ref|NP_615577.1| - 0.0073 17.1 0.0 0.021 15.6 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|20089502|ref|NP_615577.1| - 0.0077 15.1 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Methyltransf_25 PF13649.1 gi|20089502|ref|NP_615577.1| - 0.0092 16.3 0.0 0.016 15.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|20089502|ref|NP_615577.1| - 0.014 14.5 0.0 0.025 13.7 0.0 1.4 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|20089502|ref|NP_615577.1| - 0.022 15.2 0.0 0.043 14.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089502|ref|NP_615577.1| - 0.028 13.5 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|20089502|ref|NP_615577.1| - 0.031 13.8 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF43 PF01861.11 gi|20089502|ref|NP_615577.1| - 0.037 13.0 0.0 0.12 11.2 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function DUF43 TrkA_N PF02254.13 gi|20089502|ref|NP_615577.1| - 0.039 13.9 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain Methyltrans_SAM PF10672.4 gi|20089502|ref|NP_615577.1| - 0.039 12.8 0.0 0.054 12.3 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|20089502|ref|NP_615577.1| - 0.045 14.2 0.0 0.1 13.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|20089502|ref|NP_615577.1| - 0.058 12.8 0.0 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase FtsJ PF01728.14 gi|20089502|ref|NP_615577.1| - 0.062 13.2 0.0 0.099 12.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|20089502|ref|NP_615577.1| - 0.082 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 NOL1/NOP2/sun family tRNA_U5-meth_tr PF05958.6 gi|20089502|ref|NP_615577.1| - 0.088 11.4 0.0 0.14 10.7 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N6_N4_Mtase PF01555.13 gi|20089502|ref|NP_615577.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 DNA methylase NAD_binding_2 PF03446.10 gi|20089503|ref|NP_615578.1| - 9.7e-46 155.5 0.1 1.7e-45 154.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|20089503|ref|NP_615578.1| - 1.2e-20 73.8 0.0 2.1e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.13 gi|20089503|ref|NP_615578.1| - 6.7e-08 32.3 0.0 5.1e-06 26.2 0.0 2.8 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|20089503|ref|NP_615578.1| - 1.8e-07 31.2 0.0 3.2e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|20089503|ref|NP_615578.1| - 4.4e-07 30.2 0.1 1.4e-06 28.5 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|20089503|ref|NP_615578.1| - 7e-07 28.5 0.0 1.4e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|20089503|ref|NP_615578.1| - 1.1e-05 24.9 0.0 2.8e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|20089503|ref|NP_615578.1| - 2.7e-05 23.6 0.0 5.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|20089503|ref|NP_615578.1| - 0.0083 16.1 0.0 0.053 13.5 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain Saccharop_dh PF03435.13 gi|20089503|ref|NP_615578.1| - 0.011 14.7 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|20089503|ref|NP_615578.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|20089503|ref|NP_615578.1| - 0.013 14.4 0.0 0.02 13.8 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|20089503|ref|NP_615578.1| - 0.016 15.4 0.0 0.31 11.3 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.9 gi|20089503|ref|NP_615578.1| - 0.059 13.2 0.0 0.11 12.3 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_trans_4_2 PF13477.1 gi|20089503|ref|NP_615578.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like MFS_3 PF05977.8 gi|20089504|ref|NP_615579.1| - 2.9e-169 563.5 25.4 3.5e-169 563.3 17.6 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.11 gi|20089504|ref|NP_615579.1| - 4.1e-25 88.2 53.8 5.5e-25 87.8 37.3 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily ABM PF03992.11 gi|20089504|ref|NP_615579.1| - 0.00087 19.2 0.1 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase MFS_2 PF13347.1 gi|20089504|ref|NP_615579.1| - 0.0023 16.3 4.7 0.0023 16.3 3.2 2.7 1 1 1 3 3 3 1 MFS/sugar transport protein AhpC-TSA PF00578.16 gi|20089505|ref|NP_615580.1| - 2.1e-31 108.1 0.0 2.6e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|20089505|ref|NP_615580.1| - 1e-18 67.2 0.0 1.1e-18 67.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin Cation_efflux PF01545.16 gi|20089506|ref|NP_615581.1| - 7.2e-67 225.4 4.4 8.2e-67 225.2 3.0 1.0 1 0 0 1 1 1 1 Cation efflux family AMP-binding_C_2 PF14535.1 gi|20089506|ref|NP_615581.1| - 0.012 15.5 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain HisKA_2 PF07568.7 gi|20089507|ref|NP_615582.1| - 4.4e-34 116.1 0.8 9.9e-34 115.0 0.6 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|20089507|ref|NP_615582.1| - 5.9e-17 61.5 0.0 1.2e-16 60.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|20089507|ref|NP_615582.1| - 1.7e-10 40.6 0.0 3e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20089507|ref|NP_615582.1| - 1.2e-07 32.0 0.0 9.5e-07 29.1 0.0 2.3 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.9 gi|20089507|ref|NP_615582.1| - 0.00053 20.3 1.3 0.001 19.4 0.1 2.0 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20089507|ref|NP_615582.1| - 0.014 15.1 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain TMF_TATA_bd PF12325.3 gi|20089507|ref|NP_615582.1| - 0.085 12.5 2.4 0.18 11.5 1.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding HisKA_2 PF07568.7 gi|20089508|ref|NP_615583.1| - 2.1e-34 117.1 1.1 4.3e-34 116.1 0.7 1.6 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|20089508|ref|NP_615583.1| - 1.8e-16 59.9 0.0 5.3e-16 58.5 0.0 1.8 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|20089508|ref|NP_615583.1| - 6.5e-11 41.9 0.0 1.3e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20089508|ref|NP_615583.1| - 4.3e-05 23.8 0.0 0.00013 22.2 0.0 1.8 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.9 gi|20089508|ref|NP_615583.1| - 0.00061 20.1 0.1 0.0012 19.1 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20089508|ref|NP_615583.1| - 0.0044 16.7 0.0 0.0075 16.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4481 PF14800.1 gi|20089508|ref|NP_615583.1| - 0.19 10.6 2.2 0.46 9.3 1.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) SH3_8 PF13457.1 gi|20089509|ref|NP_615584.1| - 0.032 14.3 0.2 3.1 8.0 0.0 3.2 3 0 0 3 3 3 0 SH3-like domain Glyco_hydro_85 PF03644.8 gi|20089509|ref|NP_615584.1| - 0.06 12.4 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 85 DUF1724 PF08350.5 gi|20089510|ref|NP_615585.1| - 1.9e-20 72.1 0.0 5.5e-20 70.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20089510|ref|NP_615585.1| - 0.00014 21.4 0.2 0.00025 20.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20089510|ref|NP_615585.1| - 0.0019 17.8 0.2 0.0043 16.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|20089510|ref|NP_615585.1| - 0.0021 17.8 0.1 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|20089510|ref|NP_615585.1| - 0.0082 15.8 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|20089510|ref|NP_615585.1| - 0.042 14.0 0.0 1.9 8.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|20089510|ref|NP_615585.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NRDD PF13597.1 gi|20089511|ref|NP_615586.1| - 0.001 17.2 0.2 0.0014 16.7 0.1 1.3 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Alpha-2-MRAP_N PF06400.6 gi|20089511|ref|NP_615586.1| - 0.0019 17.8 0.5 0.0037 16.9 0.3 1.5 1 0 0 1 1 1 1 Alpha-2-macroglobulin RAP, N-terminal domain zf-P11 PF03854.9 gi|20089511|ref|NP_615586.1| - 0.011 15.2 1.2 0.024 14.1 0.8 1.5 1 0 0 1 1 1 0 P-11 zinc finger zf-C4pol PF14260.1 gi|20089511|ref|NP_615586.1| - 0.57 10.2 8.2 0.27 11.2 0.5 2.8 3 0 0 3 3 3 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.2 gi|20089511|ref|NP_615586.1| - 0.58 10.0 9.6 0.92 9.3 3.7 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|20089511|ref|NP_615586.1| - 0.74 9.5 11.1 0.1 12.3 1.7 2.7 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|20089511|ref|NP_615586.1| - 3.7 7.1 9.0 0.2 11.2 1.0 2.6 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain DnaJ_CXXCXGXG PF00684.14 gi|20089512|ref|NP_615587.1| - 3.3e-05 23.8 16.6 0.00047 20.1 11.8 2.5 1 1 2 3 3 3 3 DnaJ central domain DZR PF12773.2 gi|20089512|ref|NP_615587.1| - 0.001 18.8 8.0 0.0029 17.3 5.6 1.7 1 1 1 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|20089512|ref|NP_615587.1| - 0.66 9.6 8.2 0.45 10.2 0.4 2.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RING_5 PF14634.1 gi|20089512|ref|NP_615587.1| - 1.2 8.9 4.2 1.4 8.6 0.4 2.6 3 0 0 3 3 3 0 zinc-RING finger domain DUF4428 PF14471.1 gi|20089512|ref|NP_615587.1| - 2.8 7.7 6.5 5.5 6.8 1.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) Prok-RING_1 PF14446.1 gi|20089512|ref|NP_615587.1| - 5 6.9 9.9 3.7 7.3 0.7 2.7 1 1 2 3 3 3 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|20089512|ref|NP_615587.1| - 5.1 6.6 11.2 0.87 9.1 0.3 3.4 4 1 0 4 4 4 0 A2L zinc ribbon domain DUF2318 PF10080.4 gi|20089512|ref|NP_615587.1| - 5.6 6.8 7.9 7.5 6.3 1.1 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) PRC PF05239.11 gi|20089514|ref|NP_615589.1| - 1.9e-28 98.1 0.0 1.4e-18 66.5 0.0 2.1 2 0 0 2 2 2 2 PRC-barrel domain RecO_C PF02565.10 gi|20089514|ref|NP_615589.1| - 0.00092 19.0 0.0 0.13 12.1 0.0 2.1 1 1 1 2 2 2 2 Recombination protein O C terminal PRC PF05239.11 gi|20089515|ref|NP_615590.1| - 1.1e-58 195.0 0.0 6e-19 67.6 0.0 3.4 3 0 0 3 3 3 3 PRC-barrel domain Robl_LC7 PF03259.12 gi|20089515|ref|NP_615590.1| - 0.0011 18.5 0.0 6.1 6.4 0.0 3.3 3 0 0 3 3 3 2 Roadblock/LC7 domain OapA PF04225.7 gi|20089515|ref|NP_615590.1| - 0.049 13.5 1.0 24 4.8 0.0 3.7 4 0 0 4 4 4 0 Opacity-associated protein A LysM-like domain YqbF PF14553.1 gi|20089515|ref|NP_615590.1| - 0.054 13.1 0.0 2.8 7.6 0.0 3.0 3 0 0 3 3 3 0 YqbF, hypothetical protein domain DUF362 PF04015.7 gi|20089516|ref|NP_615591.1| - 7e-62 208.5 0.0 8.9e-62 208.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_21 PF14697.1 gi|20089516|ref|NP_615591.1| - 2.6e-07 30.3 12.3 5.8e-07 29.2 8.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089516|ref|NP_615591.1| - 4e-07 29.3 19.0 4.3e-05 22.9 4.2 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089516|ref|NP_615591.1| - 4.7e-07 29.4 15.0 1.4e-06 28.0 10.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089516|ref|NP_615591.1| - 6.1e-06 26.5 14.6 1.4e-05 25.3 10.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089516|ref|NP_615591.1| - 9.5e-06 25.2 13.8 0.015 15.1 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20089516|ref|NP_615591.1| - 5e-05 23.4 16.1 0.00011 22.4 11.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089516|ref|NP_615591.1| - 0.00032 20.4 14.3 0.0013 18.5 0.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089516|ref|NP_615591.1| - 0.0061 17.0 7.6 0.073 13.6 0.8 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|20089516|ref|NP_615591.1| - 0.079 13.0 18.0 0.53 10.3 12.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20089516|ref|NP_615591.1| - 0.4 11.1 11.6 4.6 7.7 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|20089516|ref|NP_615591.1| - 0.43 11.3 12.5 0.88 10.3 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|20089516|ref|NP_615591.1| - 3.9 7.8 17.9 4 7.8 2.6 2.5 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089516|ref|NP_615591.1| - 6.2 7.4 18.0 1.8 9.0 2.0 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_5 PF01022.15 gi|20089517|ref|NP_615592.1| - 2.7e-05 23.7 0.2 5.5e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20089517|ref|NP_615592.1| - 7.5e-05 22.4 0.1 0.00014 21.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain z-alpha PF02295.12 gi|20089517|ref|NP_615592.1| - 0.0011 18.7 0.8 0.0028 17.3 0.1 1.9 2 0 0 2 2 2 1 Adenosine deaminase z-alpha domain DUF2250 PF10007.4 gi|20089517|ref|NP_615592.1| - 0.0027 17.5 0.4 0.005 16.7 0.2 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|20089517|ref|NP_615592.1| - 0.0028 16.9 1.1 0.0054 16.0 0.1 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|20089517|ref|NP_615592.1| - 0.0052 16.4 0.2 0.012 15.3 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20089517|ref|NP_615592.1| - 0.0065 16.1 0.1 0.014 15.1 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2400 PF09674.5 gi|20089517|ref|NP_615592.1| - 0.046 13.4 0.0 0.05 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) TFIIE_alpha PF02002.12 gi|20089517|ref|NP_615592.1| - 0.053 13.0 0.3 0.12 11.8 0.2 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.1 gi|20089517|ref|NP_615592.1| - 0.069 12.9 0.1 0.13 12.1 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DUF948 PF06103.6 gi|20089517|ref|NP_615592.1| - 0.082 12.7 0.0 11 5.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Cpn10 PF00166.16 gi|161484939|ref|NP_615593.2| - 4.2e-25 87.5 1.1 4.7e-25 87.3 0.7 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Cpn60_TCP1 PF00118.19 gi|20089519|ref|NP_615594.1| - 7.6e-130 433.7 12.9 8.7e-130 433.5 9.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family RNase_H PF00075.19 gi|20089520|ref|NP_615595.1| - 8.4e-06 26.1 0.0 1.3e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 RNase H DUF165 PF02592.10 gi|20089521|ref|NP_615596.1| - 1.9e-46 157.8 7.7 2.9e-46 157.2 5.3 1.3 1 0 0 1 1 1 1 Uncharacterized ACR, YhhQ family COG1738 DUF4149 PF13664.1 gi|20089521|ref|NP_615596.1| - 0.38 10.8 5.7 0.21 11.6 2.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) Aminotran_1_2 PF00155.16 gi|20089523|ref|NP_615598.1| - 8.2e-63 212.5 0.0 9.3e-63 212.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|20089523|ref|NP_615598.1| - 3.9e-11 42.5 0.0 5.8e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|20089523|ref|NP_615598.1| - 4.9e-09 35.7 0.0 7.5e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|20089523|ref|NP_615598.1| - 8.8e-08 30.8 0.0 1.7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|20089523|ref|NP_615598.1| - 4e-05 22.5 0.0 7.4e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|20089523|ref|NP_615598.1| - 0.013 14.1 0.0 0.018 13.5 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Aminotran_3 PF00202.16 gi|20089523|ref|NP_615598.1| - 0.036 12.9 0.0 0.044 12.6 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III PEGA PF08308.6 gi|20089524|ref|NP_615599.1| - 3.1e-35 119.7 3.5 3.3e-20 71.6 0.2 2.4 1 1 1 2 2 2 2 PEGA domain DUF1533 PF07550.6 gi|20089524|ref|NP_615599.1| - 0.028 14.3 0.0 1.8 8.6 0.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1533) Rubrerythrin PF02915.12 gi|20089526|ref|NP_615601.1| - 1.8e-24 86.6 7.5 2.6e-23 82.8 5.2 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|20089526|ref|NP_615601.1| - 0.00012 21.8 1.7 0.00019 21.2 1.2 1.3 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.2 gi|20089526|ref|NP_615601.1| - 0.022 14.5 0.4 0.035 13.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|20089526|ref|NP_615601.1| - 0.04 13.8 3.5 3.7 7.4 2.5 2.4 1 1 0 1 1 1 0 Rubredoxin zf-C3HC4_3 PF13920.1 gi|20089526|ref|NP_615601.1| - 0.068 12.8 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|20089526|ref|NP_615601.1| - 0.082 12.5 0.8 0.15 11.6 0.5 1.4 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Rad50_zn_hook PF04423.9 gi|20089526|ref|NP_615601.1| - 0.14 11.5 4.9 0.84 9.1 0.3 2.6 1 1 1 2 2 2 0 Rad50 zinc hook motif Ogr_Delta PF04606.7 gi|20089526|ref|NP_615601.1| - 0.17 11.5 1.1 18 5.0 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_ligase_ZBD PF03119.11 gi|20089526|ref|NP_615601.1| - 0.96 9.2 6.8 0.74 9.5 0.1 2.7 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|20089526|ref|NP_615601.1| - 1.5 8.1 5.3 3.2 7.0 3.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Trigger_N PF05697.8 gi|20089527|ref|NP_615602.1| - 0.07 12.9 0.3 0.13 12.1 0.2 1.6 1 1 0 1 1 1 0 Bacterial trigger factor protein (TF) PHP_C PF13263.1 gi|20089528|ref|NP_615603.1| - 0.0015 18.0 0.0 0.0041 16.5 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|20089528|ref|NP_615603.1| - 0.0015 18.3 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 PHP domain zinc_ribbon_4 PF13717.1 gi|20089528|ref|NP_615603.1| - 0.085 12.5 2.7 0.11 12.2 0.7 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|20089528|ref|NP_615603.1| - 0.12 11.9 2.6 0.15 11.6 0.7 2.0 2 0 0 2 2 2 0 zinc-ribbon domain PAC2 PF09754.4 gi|20089529|ref|NP_615604.1| - 3.8e-56 190.3 0.0 4.6e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|20089530|ref|NP_615605.1| - 2e-25 88.2 0.5 2.1e-25 88.2 0.4 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|20089530|ref|NP_615605.1| - 8.4e-05 21.9 0.5 0.00012 21.4 0.3 1.3 1 0 0 1 1 1 1 RecR protein DUF1272 PF06906.6 gi|20089530|ref|NP_615605.1| - 0.0054 16.5 1.3 0.0062 16.3 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-FPG_IleRS PF06827.9 gi|20089530|ref|NP_615605.1| - 0.012 15.2 6.0 0.27 10.9 0.3 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS PolC_DP2 PF03833.8 gi|20089530|ref|NP_615605.1| - 0.019 12.6 0.5 0.02 12.6 0.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DZR PF12773.2 gi|20089530|ref|NP_615605.1| - 0.038 13.8 0.6 0.05 13.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|20089530|ref|NP_615605.1| - 0.039 13.7 0.7 0.27 11.1 0.5 1.9 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PHF5 PF03660.9 gi|20089530|ref|NP_615605.1| - 0.072 13.1 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 PHF5-like protein zf-H2C2_2 PF13465.1 gi|20089530|ref|NP_615605.1| - 0.076 13.3 1.2 3 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|20089530|ref|NP_615605.1| - 0.096 12.0 6.1 1.7 8.0 0.4 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|20089530|ref|NP_615605.1| - 0.13 12.2 4.8 1.1 9.2 3.3 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|20089530|ref|NP_615605.1| - 0.14 11.8 1.9 0.18 11.5 1.3 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|20089530|ref|NP_615605.1| - 0.21 11.3 2.4 0.3 10.8 1.7 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-NADH-PPase PF09297.6 gi|20089530|ref|NP_615605.1| - 0.27 10.7 3.9 1.8 8.1 0.2 2.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|20089530|ref|NP_615605.1| - 0.29 10.3 7.1 5.1 6.4 5.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|20089530|ref|NP_615605.1| - 0.32 10.2 2.4 3.2 7.0 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|20089530|ref|NP_615605.1| - 0.66 9.9 4.6 1.3 9.0 0.2 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|20089530|ref|NP_615605.1| - 2 7.9 5.3 2.5 7.6 0.6 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|20089530|ref|NP_615605.1| - 2.1 8.3 5.3 83 3.2 3.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Sgf11 PF08209.6 gi|20089530|ref|NP_615605.1| - 3.3 7.1 5.4 1.4 8.3 0.5 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prim_Zn_Ribbon PF08273.7 gi|20089530|ref|NP_615605.1| - 3.5 7.7 7.1 1.8 8.6 1.0 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase UPF0547 PF10571.4 gi|20089530|ref|NP_615605.1| - 4.2 7.1 6.7 13 5.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3797 PF12677.2 gi|20089530|ref|NP_615605.1| - 6.2 6.5 7.9 5.4 6.7 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-C2HC_2 PF13913.1 gi|20089530|ref|NP_615605.1| - 6.2 6.5 9.1 8 6.2 1.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-CCHC_6 PF15288.1 gi|20089530|ref|NP_615605.1| - 7.6 6.3 7.7 1.8 8.2 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-tcix PF14952.1 gi|20089530|ref|NP_615605.1| - 8.5 5.8 10.7 3.7 6.9 1.5 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2_3 PF13878.1 gi|20089530|ref|NP_615605.1| - 9.5 5.8 6.3 17 5.0 1.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO EIF_2_alpha PF07541.7 gi|20089531|ref|NP_615606.1| - 3.6e-29 100.7 0.1 5.6e-29 100.1 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|20089531|ref|NP_615606.1| - 1.9e-13 50.2 0.7 4e-13 49.2 0.1 1.8 2 0 0 2 2 2 1 S1 RNA binding domain LON PF02190.11 gi|20089531|ref|NP_615606.1| - 0.0085 15.7 0.1 0.073 12.7 0.0 2.1 2 0 0 2 2 2 1 ATP-dependent protease La (LON) domain Ribosomal_S27e PF01667.12 gi|20089532|ref|NP_615607.1| - 5e-25 86.7 0.9 5.5e-25 86.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|20089532|ref|NP_615607.1| - 0.0051 16.3 0.3 0.0054 16.2 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain FYVE PF01363.16 gi|20089532|ref|NP_615607.1| - 0.025 14.4 0.3 0.028 14.3 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|20089532|ref|NP_615607.1| - 0.028 14.0 0.3 0.031 13.9 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-BED PF02892.10 gi|20089532|ref|NP_615607.1| - 0.035 13.8 2.9 0.35 10.6 0.1 2.0 1 1 1 2 2 2 0 BED zinc finger Zn-ribbon_8 PF09723.5 gi|20089532|ref|NP_615607.1| - 0.091 12.7 0.9 0.14 12.1 0.6 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zf-CHY PF05495.7 gi|20089532|ref|NP_615607.1| - 0.095 12.8 0.5 0.13 12.4 0.3 1.3 1 0 0 1 1 1 0 CHY zinc finger C1_1 PF00130.17 gi|20089532|ref|NP_615607.1| - 0.12 12.1 0.3 0.16 11.7 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_3 PF13878.1 gi|20089532|ref|NP_615607.1| - 0.25 10.9 1.1 11 5.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_6 PF14599.1 gi|20089532|ref|NP_615607.1| - 0.26 11.0 3.0 1.1 9.0 2.0 2.0 2 1 1 3 3 3 0 Zinc-ribbon Sgf11 PF08209.6 gi|20089532|ref|NP_615607.1| - 0.27 10.5 3.4 0.76 9.1 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-trcl PF13451.1 gi|20089532|ref|NP_615607.1| - 0.68 9.6 4.3 3.1 7.5 0.4 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Ribosomal_L44 PF00935.14 gi|20089533|ref|NP_615608.1| - 1e-27 95.9 6.9 1.4e-27 95.4 4.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-Sec23_Sec24 PF04810.10 gi|20089533|ref|NP_615608.1| - 0.066 12.7 2.0 0.35 10.4 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Cys_rich_CPXG PF14255.1 gi|20089533|ref|NP_615608.1| - 0.16 11.8 1.3 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG Elf1 PF05129.8 gi|20089533|ref|NP_615608.1| - 0.31 10.7 5.2 0.45 10.2 0.4 2.2 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1 PF03811.8 gi|20089533|ref|NP_615608.1| - 1.4 8.5 8.6 2.9 7.4 0.1 2.8 3 0 0 3 3 3 0 InsA N-terminal domain DNA_primase_S PF01896.14 gi|20089535|ref|NP_615610.1| - 2.7e-20 72.6 0.0 5e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit FGE-sulfatase PF03781.11 gi|20089536|ref|NP_615611.1| - 1.1e-53 182.2 9.3 7.1e-53 179.6 6.5 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DHC PF09626.5 gi|20089536|ref|NP_615611.1| - 0.052 14.2 1.3 0.054 14.1 0.1 1.6 2 0 0 2 2 2 0 Dihaem cytochrome c DUF11 PF01345.13 gi|20089537|ref|NP_615612.1| - 0.0065 16.4 8.6 0.1 12.6 0.8 2.5 2 0 0 2 2 2 2 Domain of unknown function DUF11 I-set PF07679.11 gi|20089537|ref|NP_615612.1| - 0.0079 16.0 0.3 5.8 6.8 0.1 3.0 2 1 1 3 3 3 2 Immunoglobulin I-set domain PKD PF00801.15 gi|20089537|ref|NP_615612.1| - 0.015 15.0 11.7 0.57 9.9 8.1 2.7 1 1 0 1 1 1 0 PKD domain Ig_2 PF13895.1 gi|20089537|ref|NP_615612.1| - 0.046 13.8 0.1 2.6 8.2 0.0 2.3 2 0 0 2 2 2 0 Immunoglobulin domain FbpA PF05833.6 gi|20089538|ref|NP_615613.1| - 2e-121 405.7 4.1 2.6e-121 405.3 2.8 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|20089538|ref|NP_615613.1| - 5e-28 96.8 0.0 1.3e-27 95.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF814) T4SS PF07996.6 gi|20089538|ref|NP_615613.1| - 0.075 12.8 2.1 0.14 12.0 1.5 1.4 1 0 0 1 1 1 0 Type IV secretion system proteins Rotamase_2 PF13145.1 gi|20089538|ref|NP_615613.1| - 4.2 8.0 14.2 0.095 13.3 1.6 3.1 2 1 0 2 2 2 0 PPIC-type PPIASE domain eRF1_1 PF03463.10 gi|20089539|ref|NP_615614.1| - 1.4e-33 115.2 0.7 2.3e-33 114.5 0.5 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|20089539|ref|NP_615614.1| - 8.7e-24 83.9 0.7 2.6e-23 82.4 0.3 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|20089539|ref|NP_615614.1| - 1.5e-20 73.9 0.1 2.4e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 S-layer PF07752.6 gi|20089540|ref|NP_615615.1| - 1.8e-181 600.9 29.1 6.1e-96 320.5 7.5 2.1 2 0 0 2 2 2 2 S-layer protein AFOR_N PF02730.10 gi|20089540|ref|NP_615615.1| - 3.6e-07 29.7 0.0 0.011 15.1 0.0 2.3 2 0 0 2 2 2 2 Aldehyde ferredoxin oxidoreductase, N-terminal domain IBV_3C PF03620.8 gi|20089540|ref|NP_615615.1| - 0.0022 17.8 0.9 2.4 8.1 0.0 2.4 2 0 0 2 2 2 2 IBV 3C protein DUF3922 PF13059.1 gi|20089540|ref|NP_615615.1| - 0.038 14.1 7.0 0.44 10.7 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3992) JmjC PF02373.17 gi|20089540|ref|NP_615615.1| - 0.055 13.7 0.0 14 5.9 0.0 2.8 2 0 0 2 2 2 0 JmjC domain, hydroxylase F_actin_cap_B PF01115.12 gi|20089540|ref|NP_615615.1| - 0.062 12.4 6.7 1.1 8.3 0.3 2.3 2 0 0 2 2 2 0 F-actin capping protein, beta subunit DUF4415 PF14384.1 gi|20089540|ref|NP_615615.1| - 0.13 12.4 0.1 29 4.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4415) DUF2867 PF11066.3 gi|20089540|ref|NP_615615.1| - 0.14 11.8 0.0 17 5.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2867) Methylase_S PF01420.14 gi|20089540|ref|NP_615615.1| - 3.1 7.7 14.9 11 5.9 3.5 3.2 2 2 0 2 2 2 0 Type I restriction modification DNA specificity domain Lipocalin_4 PF13648.1 gi|20089540|ref|NP_615615.1| - 7.1 7.3 19.8 0.81 10.3 0.2 4.4 4 2 0 4 4 4 0 Lipocalin-like domain DUF1614 PF07758.6 gi|20089541|ref|NP_615616.1| - 5.5e-54 182.5 13.9 7.5e-54 182.1 9.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) ABC2_membrane_3 PF12698.2 gi|20089541|ref|NP_615616.1| - 0.0014 17.7 4.4 0.0014 17.7 3.0 1.7 2 1 0 2 2 2 1 ABC-2 family transporter protein YvrJ PF12841.2 gi|20089541|ref|NP_615616.1| - 0.29 10.4 0.1 0.29 10.4 0.1 2.5 3 0 0 3 3 3 0 YvrJ protein family TcdA_TcdB_pore PF12920.2 gi|20089541|ref|NP_615616.1| - 3.2 5.5 4.8 4.2 5.1 3.3 1.1 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain DisA_N PF02457.11 gi|20089542|ref|NP_615617.1| - 1.2e-30 105.0 1.6 1.8e-28 98.0 0.2 2.3 2 0 0 2 2 2 2 DisA bacterial checkpoint controller nucleotide-binding LigT_PEase PF02834.11 gi|20089543|ref|NP_615618.1| - 1.4e-29 101.9 0.1 5e-17 61.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|20089543|ref|NP_615618.1| - 2.5e-13 49.9 0.0 3.5e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|20089543|ref|NP_615618.1| - 5.4e-09 36.0 0.0 7.1e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain ApbE PF02424.10 gi|20089544|ref|NP_615619.1| - 8.7e-77 257.8 0.0 1.1e-76 257.4 0.0 1.1 1 0 0 1 1 1 1 ApbE family Cytochrome_C7 PF14522.1 gi|20089545|ref|NP_615620.1| - 5.6e-06 25.8 20.7 0.056 13.0 7.7 5.1 4 1 1 5 5 5 3 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|20089545|ref|NP_615620.1| - 2e-05 24.6 18.5 0.45 10.5 0.0 4.9 3 2 1 4 4 4 1 Cytochrome c554 and c-prime EF-hand_5 PF13202.1 gi|20089545|ref|NP_615620.1| - 0.00016 20.8 1.6 0.0041 16.3 0.0 2.4 1 1 1 2 2 2 1 EF hand EF-hand_1 PF00036.27 gi|20089545|ref|NP_615620.1| - 0.0015 17.7 0.9 0.063 12.6 0.0 2.5 1 1 1 2 2 2 2 EF hand Cytochrome_cB PF11783.3 gi|20089545|ref|NP_615620.1| - 0.0039 16.7 7.8 0.0063 16.0 0.0 4.1 4 1 0 4 4 4 1 Cytochrome c bacterial EF-hand_6 PF13405.1 gi|20089545|ref|NP_615620.1| - 0.072 13.0 0.7 0.83 9.6 0.0 2.5 1 1 1 2 2 2 0 EF-hand domain Cytochrom_c3_2 PF14537.1 gi|20089545|ref|NP_615620.1| - 0.075 13.3 24.4 43 4.5 0.2 4.9 3 2 1 4 4 4 0 Cytochrome c3 CCP_MauG PF03150.9 gi|20089545|ref|NP_615620.1| - 0.21 11.8 6.9 8.8 6.6 0.0 4.3 3 1 1 5 5 5 0 Di-haem cytochrome c peroxidase Cytochrom_NNT PF03264.9 gi|20089545|ref|NP_615620.1| - 0.85 9.0 15.7 0.66 9.3 2.9 4.5 4 1 1 5 5 5 0 NapC/NirT cytochrome c family, N-terminal region Paired_CXXCH_1 PF09699.5 gi|20089545|ref|NP_615620.1| - 1.2 8.6 18.7 15 5.1 0.6 5.5 5 0 0 5 5 5 0 Doubled CXXCH motif (Paired_CXXCH_1) Complex1_51K PF01512.12 gi|20089546|ref|NP_615621.1| - 8.2e-24 84.0 0.1 1.6e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|20089546|ref|NP_615621.1| - 1.4e-18 66.4 0.1 4e-18 64.9 0.0 1.7 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|20089546|ref|NP_615621.1| - 2.2e-11 43.4 3.5 4.9e-11 42.3 2.0 2.0 2 0 0 2 2 2 1 SLBB domain Fer4_6 PF12837.2 gi|20089546|ref|NP_615621.1| - 1.3e-08 34.3 13.1 0.0005 19.8 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089546|ref|NP_615621.1| - 2.9e-08 33.4 10.3 5.6e-08 32.4 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089546|ref|NP_615621.1| - 6.2e-08 32.5 31.7 2e-05 24.5 9.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089546|ref|NP_615621.1| - 2.7e-07 30.3 13.1 0.00091 19.3 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20089546|ref|NP_615621.1| - 2.7e-07 29.8 14.5 0.0014 18.1 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20089546|ref|NP_615621.1| - 2.1e-06 28.0 9.9 0.0017 18.7 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089546|ref|NP_615621.1| - 4e-06 26.9 24.4 6e-05 23.2 9.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089546|ref|NP_615621.1| - 5.8e-06 26.5 14.3 0.0001 22.5 10.6 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089546|ref|NP_615621.1| - 7.1e-06 26.6 5.7 0.039 14.7 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|20089546|ref|NP_615621.1| - 7.2e-06 26.2 10.6 2.3e-05 24.6 7.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089546|ref|NP_615621.1| - 2.4e-05 23.9 16.6 0.0046 16.7 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089546|ref|NP_615621.1| - 3e-05 23.7 8.7 0.023 14.5 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20089546|ref|NP_615621.1| - 0.0004 20.7 20.0 0.013 16.0 4.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20089546|ref|NP_615621.1| - 3.5 8.1 13.9 12 6.3 2.0 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain NQR2_RnfD_RnfE PF03116.10 gi|20089547|ref|NP_615622.1| - 3.5e-71 239.9 23.4 6.8e-37 127.3 5.3 2.0 1 1 1 2 2 2 2 NQR2, RnfD, RnfE family TraX PF05857.6 gi|20089547|ref|NP_615622.1| - 0.95 9.0 11.9 0.092 12.3 2.8 2.0 2 0 0 2 2 2 0 TraX protein FMN_bind PF04205.9 gi|20089548|ref|NP_615623.1| - 2.5e-19 69.2 0.1 5.2e-19 68.2 0.1 1.6 1 0 0 1 1 1 1 FMN-binding domain TRAP-gamma PF07074.7 gi|20089548|ref|NP_615623.1| - 0.04 13.4 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) Rnf-Nqr PF02508.9 gi|20089549|ref|NP_615624.1| - 5.9e-57 192.3 14.1 7.4e-57 192.0 9.7 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Rnf-Nqr PF02508.9 gi|20089550|ref|NP_615625.1| - 1.1e-62 210.9 19.1 1.3e-62 210.7 13.3 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein DUF1761 PF08570.5 gi|20089550|ref|NP_615625.1| - 1.2 9.1 15.1 0.32 10.9 1.0 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF1761) Fer4_7 PF12838.2 gi|20089551|ref|NP_615626.1| - 5.5e-21 74.6 52.7 4.4e-10 39.7 8.6 4.9 1 1 3 4 4 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089551|ref|NP_615626.1| - 7.3e-19 66.5 57.0 2.4e-08 33.2 3.6 6.9 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20089551|ref|NP_615626.1| - 4.5e-15 55.6 27.8 6e-10 39.2 9.8 4.4 2 1 2 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089551|ref|NP_615626.1| - 2.5e-12 46.3 26.1 4.3e-10 39.2 10.2 4.3 1 1 1 3 3 2 2 4Fe-4S dicluster domain FeS PF04060.8 gi|20089551|ref|NP_615626.1| - 2.5e-11 42.9 5.5 2.5e-11 42.9 3.8 3.5 4 0 0 4 4 4 1 Putative Fe-S cluster Fer4_6 PF12837.2 gi|20089551|ref|NP_615626.1| - 6.5e-11 41.5 26.1 1.5e-06 27.8 2.5 6.2 6 1 0 6 6 6 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089551|ref|NP_615626.1| - 1.3e-08 34.6 54.0 4.1e-05 23.3 11.4 4.6 2 2 3 5 5 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089551|ref|NP_615626.1| - 2.4e-08 34.5 40.4 0.0015 19.1 1.4 5.7 5 1 1 6 6 6 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|20089551|ref|NP_615626.1| - 5e-08 32.4 13.3 2.3e-06 27.2 1.9 6.2 5 2 0 5 5 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20089551|ref|NP_615626.1| - 2.4e-07 30.6 47.7 0.00024 21.0 10.9 4.3 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089551|ref|NP_615626.1| - 7.7e-06 25.8 13.5 0.0002 21.4 3.0 7.2 6 2 0 6 6 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089551|ref|NP_615626.1| - 0.00087 19.8 13.0 0.0047 17.4 1.6 6.1 4 2 3 7 7 6 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20089551|ref|NP_615626.1| - 0.0016 18.7 14.4 0.0088 16.4 3.2 5.6 6 1 1 7 7 4 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20089551|ref|NP_615626.1| - 0.027 15.0 67.8 0.099 13.2 5.4 7.3 6 1 0 6 6 5 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089551|ref|NP_615626.1| - 0.2 11.9 50.5 0.07 13.4 11.7 5.4 1 1 5 6 6 5 0 4Fe-4S dicluster domain Tic20 PF09685.5 gi|20089552|ref|NP_615627.1| - 1.5e-11 44.2 7.7 1.8e-11 43.9 5.3 1.0 1 0 0 1 1 1 1 Tic20-like protein DUF2244 PF10003.4 gi|20089552|ref|NP_615627.1| - 3.6 6.9 5.6 5.3 6.4 3.9 1.3 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF2284 PF10050.4 gi|20089553|ref|NP_615628.1| - 2.7e-47 160.4 0.5 2.9e-47 160.3 0.4 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Fer4_16 PF13484.1 gi|20089554|ref|NP_615629.1| - 0.4 11.4 8.8 19 6.0 6.3 2.5 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20089554|ref|NP_615629.1| - 0.62 10.1 5.1 5.1 7.2 1.5 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089554|ref|NP_615629.1| - 0.93 9.9 7.4 1.3 9.4 1.1 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089554|ref|NP_615629.1| - 2.1 8.2 8.8 0.53 10.1 0.4 2.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089554|ref|NP_615629.1| - 3.2 7.6 7.9 1.9 8.3 2.0 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089554|ref|NP_615629.1| - 5.4 7.3 8.3 0.45 10.8 0.5 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089554|ref|NP_615629.1| - 6.1 6.9 6.8 0.49 10.4 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ADK_lid PF05191.9 gi|20089554|ref|NP_615629.1| - 6.6 6.4 7.0 12 5.6 0.7 2.5 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rep_fac_C PF08542.6 gi|20089555|ref|NP_615630.1| - 9.7e-19 67.1 0.0 2.1e-18 66.0 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|20089555|ref|NP_615630.1| - 8e-18 64.9 0.0 1.8e-17 63.7 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|20089555|ref|NP_615630.1| - 3.5e-16 59.2 0.0 2.7e-14 53.1 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|20089555|ref|NP_615630.1| - 3.3e-08 32.8 0.0 2.6e-07 29.9 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|20089555|ref|NP_615630.1| - 1.6e-07 30.4 0.0 9.3e-06 24.5 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|20089555|ref|NP_615630.1| - 2.8e-07 30.7 0.1 0.014 15.5 0.0 2.9 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|20089555|ref|NP_615630.1| - 9.6e-07 28.9 0.0 0.0003 20.8 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|20089555|ref|NP_615630.1| - 9.8e-06 25.4 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|20089555|ref|NP_615630.1| - 1.8e-05 24.3 0.0 4.8e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|20089555|ref|NP_615630.1| - 0.00013 21.2 0.0 0.02 14.0 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.8 gi|20089555|ref|NP_615630.1| - 0.0004 19.9 0.0 0.0016 17.9 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase III, delta subunit TIP49 PF06068.8 gi|20089555|ref|NP_615630.1| - 0.0013 17.4 0.0 0.0084 14.8 0.0 2.1 2 1 1 3 3 3 1 TIP49 C-terminus AAA_17 PF13207.1 gi|20089555|ref|NP_615630.1| - 0.012 16.3 0.6 0.041 14.7 0.1 2.4 2 1 0 2 2 1 0 AAA domain AAA_5 PF07728.9 gi|20089555|ref|NP_615630.1| - 0.017 14.8 0.0 0.1 12.3 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|20089555|ref|NP_615630.1| - 0.02 14.3 0.0 0.046 13.1 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|20089555|ref|NP_615630.1| - 0.022 14.5 0.0 0.055 13.2 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_2 PF07724.9 gi|20089555|ref|NP_615630.1| - 0.031 14.1 0.0 0.084 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|20089555|ref|NP_615630.1| - 0.033 13.6 0.0 4.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|20089555|ref|NP_615630.1| - 0.037 13.4 0.0 0.078 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|20089555|ref|NP_615630.1| - 0.046 13.7 0.0 0.21 11.6 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|20089555|ref|NP_615630.1| - 0.052 13.8 0.0 0.14 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20089555|ref|NP_615630.1| - 0.055 12.9 1.2 1.5 8.2 0.0 2.6 2 1 1 3 3 3 0 AAA-like domain DUF3647 PF12363.3 gi|20089555|ref|NP_615630.1| - 0.056 13.5 0.4 13 5.8 0.1 2.5 1 1 0 2 2 2 0 Phage protein ResIII PF04851.10 gi|20089555|ref|NP_615630.1| - 0.077 12.8 0.0 0.2 11.4 0.0 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|20089555|ref|NP_615630.1| - 0.088 11.5 0.0 1.6 7.4 0.0 2.1 1 1 0 2 2 2 0 SNF2 family N-terminal domain DUF2877 PF11392.3 gi|20089555|ref|NP_615630.1| - 0.09 12.9 0.0 0.24 11.6 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF2877) AAA_11 PF13086.1 gi|20089555|ref|NP_615630.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain Fer4_7 PF12838.2 gi|20089556|ref|NP_615631.1| - 5.4e-16 58.7 30.8 3.6e-09 36.8 7.9 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089556|ref|NP_615631.1| - 9.3e-16 56.6 14.4 5.8e-09 35.1 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20089556|ref|NP_615631.1| - 1.3e-12 47.7 20.5 5.3e-09 36.2 6.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089556|ref|NP_615631.1| - 7.7e-12 44.8 22.9 4.3e-09 36.0 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089556|ref|NP_615631.1| - 8e-12 44.8 10.4 9e-07 28.6 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089556|ref|NP_615631.1| - 1.2e-11 43.9 13.8 1.4e-06 27.9 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089556|ref|NP_615631.1| - 3.9e-11 42.1 14.6 1e-06 28.2 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20089556|ref|NP_615631.1| - 2e-10 40.5 6.3 4e-10 39.5 4.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20089556|ref|NP_615631.1| - 4.3e-09 35.9 13.1 1.9e-05 24.5 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089556|ref|NP_615631.1| - 4.7e-08 33.6 7.7 0.00024 21.7 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|20089556|ref|NP_615631.1| - 2e-07 31.3 8.6 0.00069 19.9 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20089556|ref|NP_615631.1| - 5.9e-07 29.5 17.8 0.0021 18.4 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089556|ref|NP_615631.1| - 3.4e-06 27.3 31.4 0.00041 20.6 7.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20089556|ref|NP_615631.1| - 6.1e-05 23.3 14.0 0.0093 16.3 2.0 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|20089556|ref|NP_615631.1| - 6.2e-05 23.4 6.9 0.012 16.1 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|20089556|ref|NP_615631.1| - 0.015 15.1 3.9 0.042 13.7 2.3 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain E6 PF00518.12 gi|20089556|ref|NP_615631.1| - 0.035 14.4 2.9 0.039 14.2 2.0 1.1 1 0 0 1 1 1 0 Early Protein (E6) DUF678 PF05077.7 gi|20089556|ref|NP_615631.1| - 0.2 11.6 6.9 0.54 10.2 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) c-SKI_SMAD_bind PF08782.5 gi|20089556|ref|NP_615631.1| - 0.47 10.6 2.6 6.6 6.9 0.1 2.1 2 0 0 2 2 2 0 c-SKI Smad4 binding domain Keratin_matx PF04579.7 gi|20089556|ref|NP_615631.1| - 0.87 9.9 8.4 2.4 8.4 0.5 2.1 1 1 1 2 2 2 0 Keratin, high-sulphur matrix protein CBFD_NFYB_HMF PF00808.18 gi|20089557|ref|NP_615632.1| - 2.1e-16 59.7 0.2 2.6e-16 59.4 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|20089557|ref|NP_615632.1| - 1.9e-11 43.8 0.1 2.4e-11 43.5 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|20089557|ref|NP_615632.1| - 5.4e-06 26.0 0.0 6.4e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|20089557|ref|NP_615632.1| - 1.3e-05 25.2 0.0 1.5e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|20089557|ref|NP_615632.1| - 0.0011 18.7 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|20089557|ref|NP_615632.1| - 0.0011 18.2 0.0 0.0012 18.1 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TAF PF02969.12 gi|20089557|ref|NP_615632.1| - 0.0046 16.8 0.1 0.0052 16.7 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.11 gi|20089557|ref|NP_615632.1| - 0.023 14.5 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Peptidase_C39 PF03412.10 gi|20089557|ref|NP_615632.1| - 0.038 13.8 0.1 0.04 13.7 0.1 1.0 1 0 0 1 1 1 0 Peptidase C39 family TFIID_20kDa PF03847.8 gi|20089557|ref|NP_615632.1| - 0.058 13.6 0.0 0.065 13.5 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A PCP_red PF08369.5 gi|20089557|ref|NP_615632.1| - 0.059 13.2 1.0 0.21 11.5 0.2 2.0 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF2703 PF10865.3 gi|20089557|ref|NP_615632.1| - 0.13 12.2 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) Methyltransf_25 PF13649.1 gi|20089558|ref|NP_615633.1| - 8.8e-09 35.6 0.0 1.7e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20089558|ref|NP_615633.1| - 0.00015 21.7 0.0 0.00028 20.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089558|ref|NP_615633.1| - 0.0016 18.9 0.0 0.0066 17.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089558|ref|NP_615633.1| - 0.0033 17.8 0.0 0.018 15.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|20089558|ref|NP_615633.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|20089558|ref|NP_615633.1| - 0.024 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|20089558|ref|NP_615633.1| - 0.025 13.2 0.0 0.052 12.2 0.0 1.5 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase PYC_OADA PF02436.13 gi|20089559|ref|NP_615634.1| - 2.4e-66 222.9 0.1 4e-66 222.1 0.1 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|20089559|ref|NP_615634.1| - 1.2e-43 149.5 0.0 1.8e-43 148.9 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|20089559|ref|NP_615634.1| - 8.7e-16 57.3 3.7 8.7e-16 57.3 2.6 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|20089559|ref|NP_615634.1| - 3.8e-09 36.0 0.6 0.00017 21.1 0.0 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.1 gi|20089559|ref|NP_615634.1| - 0.0022 17.6 1.5 0.0084 15.8 0.5 2.3 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.1 gi|20089559|ref|NP_615634.1| - 0.0042 17.4 0.1 4 7.8 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein NQRA PF05896.6 gi|20089559|ref|NP_615634.1| - 0.019 14.1 0.4 0.059 12.5 0.2 1.8 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HlyD_2 PF12700.2 gi|20089559|ref|NP_615634.1| - 0.039 13.1 0.3 2.8 7.0 0.0 2.4 1 1 1 2 2 2 0 HlyD family secretion protein GCV_H PF01597.14 gi|20089559|ref|NP_615634.1| - 0.039 13.6 0.5 0.12 12.0 0.4 1.8 1 0 0 1 1 1 0 Glycine cleavage H-protein HlyD PF00529.15 gi|20089559|ref|NP_615634.1| - 0.047 12.9 0.2 0.2 10.9 0.0 1.9 1 1 1 2 2 2 0 HlyD family secretion protein CPSase_L_D2 PF02786.12 gi|20089560|ref|NP_615635.1| - 1.6e-80 269.3 0.2 2.7e-80 268.6 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|20089560|ref|NP_615635.1| - 2.8e-45 152.9 0.1 2e-44 150.1 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|20089560|ref|NP_615635.1| - 4.7e-42 142.3 0.0 9.3e-42 141.3 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|20089560|ref|NP_615635.1| - 3.3e-16 59.5 0.0 7.3e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20089560|ref|NP_615635.1| - 8.2e-16 57.6 0.0 6e-15 54.8 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|20089560|ref|NP_615635.1| - 1.7e-13 50.4 0.1 4.9e-13 48.9 0.1 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|20089560|ref|NP_615635.1| - 1.3e-09 37.7 0.1 1.5e-08 34.3 0.0 2.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|20089560|ref|NP_615635.1| - 3.9e-07 29.5 0.1 7.1e-07 28.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|20089560|ref|NP_615635.1| - 3.9e-07 30.0 0.1 6.7e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|20089560|ref|NP_615635.1| - 6e-05 22.6 0.1 0.00011 21.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|20089560|ref|NP_615635.1| - 0.0014 17.9 0.0 0.0034 16.6 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain OAD_gamma PF04277.8 gi|20089560|ref|NP_615635.1| - 0.011 16.0 2.3 0.031 14.6 1.6 1.7 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Oxidored_nitro PF00148.14 gi|20089560|ref|NP_615635.1| - 0.031 12.9 0.1 0.081 11.5 0.0 1.7 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase BPL_LplA_LipB PF03099.14 gi|20089561|ref|NP_615636.1| - 1.2e-22 80.2 0.0 2e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|20089561|ref|NP_615636.1| - 1.1e-16 60.1 0.1 2.4e-16 59.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|20089561|ref|NP_615636.1| - 6e-10 38.6 0.1 1.7e-09 37.2 0.1 1.8 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|20089561|ref|NP_615636.1| - 0.0004 19.7 0.0 0.00076 18.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|20089561|ref|NP_615636.1| - 0.055 13.4 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|20089561|ref|NP_615636.1| - 0.085 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain S-layer PF07752.6 gi|20089562|ref|NP_615637.1| - 1.6e-09 37.3 0.0 1.9e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 S-layer protein IncA PF04156.9 gi|20089563|ref|NP_615638.1| - 0.00012 21.7 14.9 0.00012 21.7 10.4 3.0 1 1 0 2 2 2 1 IncA protein CENP-F_leu_zip PF10473.4 gi|20089563|ref|NP_615638.1| - 0.00095 19.0 15.5 0.00095 19.0 10.7 3.2 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_I PF06008.9 gi|20089563|ref|NP_615638.1| - 0.0042 16.4 33.6 0.074 12.3 11.7 2.2 2 0 0 2 2 2 2 Laminin Domain I Seryl_tRNA_N PF02403.17 gi|20089563|ref|NP_615638.1| - 0.011 15.6 8.2 0.011 15.6 5.7 4.4 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.1 gi|20089563|ref|NP_615638.1| - 0.022 13.2 35.4 0.021 13.2 14.5 2.2 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|20089563|ref|NP_615638.1| - 0.03 14.1 24.6 1.8 8.3 1.0 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) DUF3450 PF11932.3 gi|20089563|ref|NP_615638.1| - 0.063 12.5 22.9 0.11 11.7 2.0 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Reo_sigmaC PF04582.7 gi|20089563|ref|NP_615638.1| - 0.1 11.7 7.6 0.38 9.8 1.1 2.8 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|20089563|ref|NP_615638.1| - 0.15 10.6 39.9 0.029 13.0 10.2 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF3584 PF12128.3 gi|20089563|ref|NP_615638.1| - 0.25 8.6 36.5 0.37 8.0 25.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) IL5 PF02025.10 gi|20089563|ref|NP_615638.1| - 0.35 10.9 5.0 1.9 8.5 0.1 3.0 2 1 0 3 3 3 0 Interleukin 5 NPV_P10 PF05531.7 gi|20089563|ref|NP_615638.1| - 0.42 10.8 15.5 0.33 11.2 2.1 4.4 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein V_ATPase_I PF01496.14 gi|20089563|ref|NP_615638.1| - 0.49 8.1 26.8 1.9 6.2 18.3 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family AlaDh_PNT_C PF01262.16 gi|20089563|ref|NP_615638.1| - 0.61 9.6 8.8 3.4 7.2 0.4 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF948 PF06103.6 gi|20089563|ref|NP_615638.1| - 0.66 9.8 12.3 4 7.3 1.2 4.3 2 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|20089563|ref|NP_615638.1| - 0.67 9.7 27.6 0.052 13.3 2.7 4.1 2 2 2 4 4 4 0 Laminin Domain II MCPsignal PF00015.16 gi|20089563|ref|NP_615638.1| - 0.76 9.2 13.2 0.93 8.9 1.7 2.6 2 2 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain APG6 PF04111.7 gi|20089563|ref|NP_615638.1| - 2 7.4 40.7 0.32 10.0 9.3 3.1 1 1 2 3 3 3 0 Autophagy protein Apg6 zf-C4H2 PF10146.4 gi|20089563|ref|NP_615638.1| - 2.3 8.1 31.3 0.89 9.5 6.2 2.2 2 0 0 2 2 2 0 Zinc finger-containing protein GAS PF13851.1 gi|20089563|ref|NP_615638.1| - 3.4 6.8 46.5 0.17 11.0 11.0 3.4 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding ERM PF00769.14 gi|20089563|ref|NP_615638.1| - 3.9 6.9 38.3 0.037 13.5 9.4 2.5 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF972 PF06156.8 gi|20089563|ref|NP_615638.1| - 8.4 6.7 33.5 1.8 8.9 3.4 4.1 2 2 1 3 3 3 0 Protein of unknown function (DUF972) Mnd1 PF03962.10 gi|20089564|ref|NP_615639.1| - 0.0043 16.7 8.3 0.0043 16.7 5.8 2.2 1 1 1 2 2 2 1 Mnd1 family Ubiq_cyt_C_chap PF03981.7 gi|20089564|ref|NP_615639.1| - 0.025 14.4 1.1 0.041 13.7 0.4 1.6 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone Peptidase_S46 PF10459.4 gi|20089564|ref|NP_615639.1| - 0.33 9.3 11.1 0.39 9.0 7.7 1.1 1 0 0 1 1 1 0 Peptidase S46 Fib_alpha PF08702.5 gi|20089564|ref|NP_615639.1| - 4.8 7.2 17.5 5.1 7.2 4.1 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family CorA PF01544.13 gi|20089564|ref|NP_615639.1| - 6.3 5.7 10.4 3.4 6.6 5.3 1.8 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF424 PF04242.8 gi|20089565|ref|NP_615640.1| - 3.4e-32 110.3 0.2 3.7e-32 110.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Plectin PF00681.15 gi|20089565|ref|NP_615640.1| - 0.082 12.4 0.0 0.82 9.2 0.0 2.4 2 1 1 3 3 3 0 Plectin repeat Phytoreo_S7 PF07236.6 gi|20089565|ref|NP_615640.1| - 0.13 10.5 0.0 0.15 10.3 0.0 1.0 1 0 0 1 1 1 0 Phytoreovirus S7 protein MCM PF00493.18 gi|20089566|ref|NP_615641.1| - 3.5e-132 440.2 0.0 5.4e-132 439.5 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|20089566|ref|NP_615641.1| - 5.4e-17 62.4 0.1 4.8e-16 59.3 0.1 2.5 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|20089566|ref|NP_615641.1| - 2.3e-06 26.9 0.1 0.00024 20.3 0.0 2.3 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|20089566|ref|NP_615641.1| - 8.9e-06 25.4 0.0 2.5e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|20089566|ref|NP_615641.1| - 0.0045 16.5 0.1 0.018 14.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|20089566|ref|NP_615641.1| - 0.013 15.4 0.0 17 5.2 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|20089566|ref|NP_615641.1| - 0.08 13.1 0.0 0.29 11.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SpoU_methylase PF00588.14 gi|20089567|ref|NP_615642.1| - 1.9e-30 105.6 0.0 3.2e-30 104.8 0.0 1.4 1 0 0 1 1 1 1 SpoU rRNA Methylase family OTCace PF00185.19 gi|20089567|ref|NP_615642.1| - 0.0012 18.7 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AdoHcyase_NAD PF00670.16 gi|20089567|ref|NP_615642.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.6 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4 PF00037.22 gi|20089568|ref|NP_615643.1| - 4e-14 51.5 13.1 1.2e-07 30.9 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20089568|ref|NP_615643.1| - 8.2e-13 48.5 26.3 4.5e-09 36.5 10.5 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089568|ref|NP_615643.1| - 1.2e-11 43.8 15.0 6.8e-07 28.8 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089568|ref|NP_615643.1| - 2.8e-11 43.0 26.8 6.4e-10 38.6 10.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089568|ref|NP_615643.1| - 6e-10 38.4 17.2 4.7e-07 29.3 2.4 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089568|ref|NP_615643.1| - 6.5e-10 38.7 10.9 7.6e-10 38.5 7.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089568|ref|NP_615643.1| - 1.3e-08 35.0 28.8 1.5e-06 28.3 11.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20089568|ref|NP_615643.1| - 1.4e-06 28.7 10.9 2.7e-06 27.8 0.6 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|20089568|ref|NP_615643.1| - 2e-06 27.6 16.6 0.00011 22.2 2.1 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20089568|ref|NP_615643.1| - 3.8e-06 27.2 11.8 0.00096 19.5 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089568|ref|NP_615643.1| - 1.7e-05 24.7 15.6 4.5e-05 23.4 10.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089568|ref|NP_615643.1| - 0.00027 21.6 14.9 0.043 14.5 1.1 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|20089568|ref|NP_615643.1| - 0.00035 20.8 2.7 0.00035 20.8 1.9 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20089568|ref|NP_615643.1| - 0.0012 19.2 22.3 0.029 14.9 3.0 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089568|ref|NP_615643.1| - 0.0013 19.0 16.6 0.029 14.6 3.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20089568|ref|NP_615643.1| - 0.014 15.2 7.0 0.043 13.6 4.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|20089568|ref|NP_615643.1| - 4.2 7.2 8.9 9.6 6.1 0.7 2.2 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster DUF4001 PF13165.1 gi|20089568|ref|NP_615643.1| - 8 6.2 11.9 0.98 9.1 1.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4001) Rubrerythrin PF02915.12 gi|20089569|ref|NP_615644.1| - 3.6e-14 53.2 1.7 3.3e-13 50.1 1.2 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|20089569|ref|NP_615644.1| - 1.3e-05 24.9 1.7 6e-05 22.8 1.2 1.7 1 1 0 1 1 1 1 Ferritin-like domain Phenol_Hydrox PF02332.13 gi|20089569|ref|NP_615644.1| - 0.041 13.1 0.1 0.73 9.0 0.0 2.0 2 0 0 2 2 2 0 Methane/Phenol/Toluene Hydroxylase FA_desaturase_2 PF03405.9 gi|20089569|ref|NP_615644.1| - 0.077 11.7 0.2 4.3 5.9 0.0 2.0 1 1 1 2 2 2 0 Fatty acid desaturase NIR_SIR PF01077.17 gi|20089570|ref|NP_615645.1| - 3.1e-37 127.3 0.0 4.6e-37 126.7 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|20089570|ref|NP_615645.1| - 3.8e-16 58.4 0.0 6.4e-16 57.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain PMBR PF09373.5 gi|20089570|ref|NP_615645.1| - 0.051 13.5 0.1 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 Pseudomurein-binding repeat Nitrate_red_gam PF02665.9 gi|20089572|ref|NP_615647.1| - 8.1e-05 22.0 12.9 0.00011 21.6 1.1 2.8 3 0 0 3 3 3 2 Nitrate reductase gamma subunit CCG PF02754.11 gi|20089573|ref|NP_615648.1| - 2e-37 127.0 1.7 4.9e-19 68.1 0.5 2.8 4 0 0 4 4 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|20089573|ref|NP_615648.1| - 2.5e-09 37.0 3.5 2.5e-09 37.0 2.4 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089573|ref|NP_615648.1| - 6.5e-09 36.0 7.2 6.7e-09 36.0 3.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089573|ref|NP_615648.1| - 3.6e-08 33.6 3.9 3.6e-08 33.6 2.7 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089573|ref|NP_615648.1| - 1.2e-07 32.0 8.7 0.0049 17.2 0.3 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089573|ref|NP_615648.1| - 1.2e-06 28.6 13.8 0.00082 19.5 0.6 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089573|ref|NP_615648.1| - 1.7e-06 27.6 7.6 1.7e-06 27.6 5.3 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089573|ref|NP_615648.1| - 0.00075 20.1 14.4 0.00077 20.1 7.3 2.8 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20089573|ref|NP_615648.1| - 0.0011 18.7 8.4 0.11 12.4 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089573|ref|NP_615648.1| - 0.006 16.1 1.6 0.006 16.1 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089573|ref|NP_615648.1| - 0.01 15.6 20.1 0.013 15.3 1.3 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20089573|ref|NP_615648.1| - 0.012 15.4 1.8 0.012 15.4 1.3 3.0 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20089573|ref|NP_615648.1| - 0.017 15.6 4.2 0.017 15.6 2.9 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20089573|ref|NP_615648.1| - 0.14 12.7 7.3 1.9 9.1 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|20089573|ref|NP_615648.1| - 0.53 10.7 17.9 0.22 11.9 1.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain DUF116 PF01976.12 gi|20089574|ref|NP_615649.1| - 3.5e-44 150.0 3.2 4.1e-44 149.8 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 ABC2_membrane PF01061.19 gi|20089574|ref|NP_615649.1| - 0.14 11.2 3.1 0.2 10.8 2.1 1.2 1 0 0 1 1 1 0 ABC-2 type transporter DUF116 PF01976.12 gi|20089575|ref|NP_615650.1| - 4.2e-42 143.3 0.4 5.3e-42 142.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 DAO PF01266.19 gi|20089576|ref|NP_615651.1| - 2.1e-12 46.6 0.1 4.4e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|20089576|ref|NP_615651.1| - 4.6e-10 39.0 0.7 1.5e-06 27.5 0.2 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|20089576|ref|NP_615651.1| - 9.4e-09 34.8 0.0 1.3e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20089576|ref|NP_615651.1| - 2.7e-07 29.4 0.1 0.0011 17.4 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|20089576|ref|NP_615651.1| - 1.5e-06 28.2 0.0 3.7e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|20089576|ref|NP_615651.1| - 2.2e-05 23.5 0.0 5.4e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|20089576|ref|NP_615651.1| - 8.5e-05 21.3 0.1 0.16 10.5 0.0 2.6 2 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|20089576|ref|NP_615651.1| - 0.00033 19.6 0.0 0.00062 18.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|20089576|ref|NP_615651.1| - 0.00092 18.3 0.0 0.0019 17.3 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|20089576|ref|NP_615651.1| - 0.0014 18.5 0.0 0.016 15.2 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|20089576|ref|NP_615651.1| - 0.0037 16.1 0.1 0.0077 15.1 0.0 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Lysyl_oxidase PF01186.12 gi|20089576|ref|NP_615651.1| - 0.027 14.0 0.1 0.058 13.0 0.0 1.5 2 0 0 2 2 2 0 Lysyl oxidase Pyr_redox PF00070.22 gi|20089576|ref|NP_615651.1| - 0.049 14.0 0.2 12 6.3 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|20089576|ref|NP_615651.1| - 0.079 13.0 0.1 0.2 11.6 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|20089577|ref|NP_615652.1| - 7.7e-10 38.1 0.1 4.3e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|20089577|ref|NP_615652.1| - 1.4e-09 37.4 0.1 1.6e-07 30.7 0.1 2.9 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|20089577|ref|NP_615652.1| - 2.8e-07 29.5 0.0 0.00024 19.8 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|20089577|ref|NP_615652.1| - 3.7e-06 26.3 0.0 5.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20089577|ref|NP_615652.1| - 7.7e-06 24.6 0.1 0.0092 14.4 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|20089577|ref|NP_615652.1| - 5.2e-05 23.2 0.0 9.8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|20089577|ref|NP_615652.1| - 0.0022 17.9 0.2 0.039 13.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|20089577|ref|NP_615652.1| - 0.0055 15.8 0.0 0.012 14.7 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|20089577|ref|NP_615652.1| - 0.0098 16.2 0.1 1.1 9.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|20089577|ref|NP_615652.1| - 0.014 14.3 0.0 0.25 10.1 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.17 gi|20089577|ref|NP_615652.1| - 0.015 14.1 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|20089577|ref|NP_615652.1| - 0.016 14.0 0.1 0.042 12.7 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain Dus PF01207.12 gi|20089578|ref|NP_615653.1| - 3.1e-14 52.5 0.1 9.1e-14 50.9 0.1 1.7 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|20089578|ref|NP_615653.1| - 1.3e-06 27.8 0.1 5.2e-06 25.8 0.1 1.9 1 1 2 3 3 3 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|20089578|ref|NP_615653.1| - 0.032 13.1 0.2 0.046 12.6 0.1 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain CitG PF01874.11 gi|20089579|ref|NP_615654.1| - 1.9e-96 322.4 0.0 2.3e-96 322.2 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|20089580|ref|NP_615655.1| - 3.9e-57 192.6 0.0 4.5e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Flavoprotein PF02441.14 gi|20089581|ref|NP_615656.1| - 8.2e-19 67.5 0.0 1.2e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|20089581|ref|NP_615656.1| - 1.5e-07 30.6 12.3 1.5e-06 27.5 1.5 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|20089581|ref|NP_615656.1| - 5.6e-07 29.3 1.8 8.1e-07 28.8 1.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089581|ref|NP_615656.1| - 7e-06 26.6 7.5 0.0014 19.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|20089581|ref|NP_615656.1| - 1.5e-05 25.2 10.2 0.00018 21.7 0.5 2.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089581|ref|NP_615656.1| - 1.8e-05 24.8 22.2 0.00086 19.5 1.3 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089581|ref|NP_615656.1| - 6.2e-05 23.2 4.7 0.013 15.8 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089581|ref|NP_615656.1| - 0.00017 21.2 14.3 0.017 15.0 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089581|ref|NP_615656.1| - 0.0005 19.8 22.7 0.002 17.8 9.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089581|ref|NP_615656.1| - 0.00057 19.6 9.9 0.0011 18.8 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089581|ref|NP_615656.1| - 0.0078 16.0 11.2 0.056 13.3 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain DUF3576 PF12100.3 gi|20089581|ref|NP_615656.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3576) Fer4_8 PF13183.1 gi|20089581|ref|NP_615656.1| - 0.36 10.9 11.9 0.092 12.7 0.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20089581|ref|NP_615656.1| - 1.1 9.8 9.5 0.65 10.5 0.2 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20089581|ref|NP_615656.1| - 6.5 7.2 12.4 1.7 9.0 0.5 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain zf-CXXC PF02008.15 gi|20089581|ref|NP_615656.1| - 6.9 6.5 12.1 0.51 10.1 2.2 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain Fer4_3 PF12798.2 gi|20089581|ref|NP_615656.1| - 8.3 7.2 17.7 0.1 13.2 2.8 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain ABC_tran PF00005.22 gi|20089582|ref|NP_615657.1| - 3.2e-28 98.7 0.0 4.4e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089582|ref|NP_615657.1| - 2.1e-07 31.2 0.4 3.7e-06 27.1 0.1 2.0 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20089582|ref|NP_615657.1| - 0.0012 18.1 0.1 0.0073 15.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20089582|ref|NP_615657.1| - 0.022 14.2 0.1 0.043 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|20089582|ref|NP_615657.1| - 0.088 11.9 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|20089582|ref|NP_615657.1| - 0.13 12.1 0.0 1.5 8.7 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|20089583|ref|NP_615658.1| - 1.6e-23 83.5 0.0 2e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20089583|ref|NP_615658.1| - 3.3e-16 59.3 0.6 7.3e-16 58.2 0.5 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.1 gi|20089583|ref|NP_615658.1| - 0.00022 20.6 0.0 0.00045 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|20089583|ref|NP_615658.1| - 0.00034 20.6 0.0 0.0055 16.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20089583|ref|NP_615658.1| - 0.0018 17.5 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20089583|ref|NP_615658.1| - 0.0022 18.0 0.1 0.0047 16.9 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|20089583|ref|NP_615658.1| - 0.0041 16.5 0.0 0.011 15.1 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|20089583|ref|NP_615658.1| - 0.0052 15.9 0.0 0.0089 15.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|20089583|ref|NP_615658.1| - 0.011 15.9 0.1 0.024 14.8 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|20089583|ref|NP_615658.1| - 0.015 15.4 0.1 0.038 14.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|20089583|ref|NP_615658.1| - 0.024 14.0 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|20089583|ref|NP_615658.1| - 0.05 12.4 0.0 0.075 11.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|20089583|ref|NP_615658.1| - 0.06 13.0 0.1 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 NACHT domain DUF258 PF03193.11 gi|20089583|ref|NP_615658.1| - 0.079 12.1 0.1 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|20089583|ref|NP_615658.1| - 0.095 12.4 0.0 0.3 10.8 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain BPD_transp_1 PF00528.17 gi|20089584|ref|NP_615659.1| - 1e-16 61.0 10.1 1e-16 61.0 7.0 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20089584|ref|NP_615659.1| - 0.041 13.2 0.1 0.041 13.2 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|20089585|ref|NP_615660.1| - 3.6e-35 121.1 11.4 5.4e-35 120.5 7.9 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3482 PF11981.3 gi|20089585|ref|NP_615660.1| - 0.24 10.6 0.8 0.34 10.0 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF1049 PF06305.6 gi|20089585|ref|NP_615660.1| - 2.5 7.6 5.6 1.2 8.6 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) SBP_bac_5 PF00496.17 gi|20089586|ref|NP_615661.1| - 5.5e-67 226.1 0.5 7.2e-67 225.8 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle FAM176 PF14851.1 gi|20089587|ref|NP_615662.1| - 0.076 12.6 3.3 0.095 12.3 2.3 1.1 1 0 0 1 1 1 0 FAM176 family NPR3 PF03666.8 gi|20089587|ref|NP_615662.1| - 0.2 10.1 9.1 0.22 10.0 6.3 1.0 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Gti1_Pac2 PF09729.4 gi|20089587|ref|NP_615662.1| - 0.31 10.9 8.0 0.45 10.3 5.6 1.3 1 0 0 1 1 1 0 Gti1/Pac2 family DUF789 PF05623.7 gi|20089587|ref|NP_615662.1| - 0.32 10.4 4.5 0.32 10.4 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF789) DUF3449 PF11931.3 gi|20089587|ref|NP_615662.1| - 0.56 9.6 7.6 0.59 9.6 5.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) AIF_C PF14721.1 gi|20089587|ref|NP_615662.1| - 0.66 10.2 5.6 0.73 10.0 3.9 1.1 1 0 0 1 1 1 0 Apoptosis-inducing factor, mitochondrion-associated, C-term Serinc PF03348.10 gi|20089587|ref|NP_615662.1| - 0.79 8.3 2.3 0.76 8.4 1.6 1.0 1 0 0 1 1 1 0 Serine incorporator (Serinc) Zip PF02535.17 gi|20089587|ref|NP_615662.1| - 1.4 7.8 4.5 1.4 7.8 3.1 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter CDC45 PF02724.9 gi|20089587|ref|NP_615662.1| - 1.5 6.7 13.4 1.8 6.5 9.3 1.0 1 0 0 1 1 1 0 CDC45-like protein Neur_chan_memb PF02932.11 gi|20089587|ref|NP_615662.1| - 1.9 8.3 3.7 1.9 8.3 2.6 1.0 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region NARP1 PF12569.3 gi|20089587|ref|NP_615662.1| - 2.3 6.8 13.0 2.6 6.7 9.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 DUF1510 PF07423.6 gi|20089587|ref|NP_615662.1| - 2.4 7.4 17.7 2.7 7.3 12.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Vfa1 PF08432.5 gi|20089587|ref|NP_615662.1| - 2.4 8.1 17.2 2.9 7.8 11.9 1.0 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 YqfQ PF14181.1 gi|20089587|ref|NP_615662.1| - 2.5 8.1 13.8 2.9 7.8 9.5 1.1 1 0 0 1 1 1 0 YqfQ-like protein Rtf2 PF04641.7 gi|20089587|ref|NP_615662.1| - 2.9 7.0 13.2 3.2 6.8 9.2 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger Sec62 PF03839.11 gi|20089587|ref|NP_615662.1| - 2.9 7.2 10.8 3.2 7.1 7.5 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 Apt1 PF10351.4 gi|20089587|ref|NP_615662.1| - 3.3 6.4 11.4 3.5 6.3 7.9 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF2201_N PF13203.1 gi|20089587|ref|NP_615662.1| - 3.4 6.7 9.6 4 6.5 6.6 1.0 1 0 0 1 1 1 0 Putative metallopeptidase domain Pox_Ag35 PF03286.9 gi|20089587|ref|NP_615662.1| - 4.3 6.8 15.9 4.7 6.6 11.0 1.0 1 0 0 1 1 1 0 Pox virus Ag35 surface protein RRN3 PF05327.6 gi|20089587|ref|NP_615662.1| - 4.7 5.1 7.1 5.2 5.0 4.9 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 FancD2 PF14631.1 gi|20089587|ref|NP_615662.1| - 9.9 3.1 11.1 10 3.0 7.7 1.0 1 0 0 1 1 1 0 Fanconi anaemia protein FancD2 nuclease PHP PF02811.14 gi|20089588|ref|NP_615663.1| - 3.6e-06 26.8 0.1 4.9e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 PHP domain EFhand_Ca_insen PF08726.5 gi|20089588|ref|NP_615663.1| - 0.012 15.5 0.0 0.031 14.2 0.0 1.7 1 0 0 1 1 1 0 Ca2+ insensitive EF hand PHP_C PF13263.1 gi|20089588|ref|NP_615663.1| - 0.066 12.7 0.0 0.31 10.5 0.0 2.0 2 0 0 2 2 2 0 PHP-associated Mrr_cat PF04471.7 gi|20089589|ref|NP_615664.1| - 0.0016 18.2 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF234 PF03008.9 gi|20089589|ref|NP_615664.1| - 0.057 13.5 0.4 0.11 12.6 0.3 1.5 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function Aldedh PF00171.17 gi|20089590|ref|NP_615665.1| - 4.7e-131 437.3 0.0 5.6e-131 437.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|20089590|ref|NP_615665.1| - 0.0067 15.1 0.0 0.0097 14.6 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Spc7 PF08317.6 gi|20089591|ref|NP_615666.1| - 0.00017 20.3 11.3 0.0002 20.1 7.8 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Prefoldin_2 PF01920.15 gi|20089591|ref|NP_615666.1| - 0.00024 20.7 12.5 0.072 12.8 2.8 2.6 2 1 0 2 2 2 2 Prefoldin subunit Laminin_II PF06009.7 gi|20089591|ref|NP_615666.1| - 0.00077 19.2 5.6 0.27 11.0 0.5 2.9 1 1 2 3 3 3 2 Laminin Domain II IncA PF04156.9 gi|20089591|ref|NP_615666.1| - 0.0011 18.5 9.5 0.076 12.6 1.9 2.0 1 1 1 2 2 2 2 IncA protein Occludin_ELL PF07303.8 gi|20089591|ref|NP_615666.1| - 0.0068 17.1 5.6 0.091 13.5 1.3 2.2 1 1 1 2 2 2 1 Occludin homology domain CK2S PF15011.1 gi|20089591|ref|NP_615666.1| - 0.01 15.6 0.6 0.012 15.3 0.4 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate Baculo_PEP_C PF04513.7 gi|20089591|ref|NP_615666.1| - 0.015 15.0 1.0 0.16 11.7 0.7 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Orthopox_A5L PF06193.6 gi|20089591|ref|NP_615666.1| - 0.033 14.1 6.1 0.46 10.4 0.3 2.6 1 1 2 3 3 3 0 Orthopoxvirus A5L protein-like DUF1843 PF08898.5 gi|20089591|ref|NP_615666.1| - 0.039 13.9 1.4 0.14 12.2 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1843) Hemerythrin PF01814.18 gi|20089591|ref|NP_615666.1| - 0.045 13.9 1.4 7.2 6.7 0.0 2.2 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF948 PF06103.6 gi|20089591|ref|NP_615666.1| - 0.045 13.6 3.5 2.1 8.2 0.1 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Med22 PF06179.7 gi|20089591|ref|NP_615666.1| - 0.046 13.7 5.8 0.04 13.9 3.3 1.5 1 1 1 2 2 2 0 Surfeit locus protein 5 subunit 22 of Mediator complex DNA_topoisoIV PF00521.15 gi|20089591|ref|NP_615666.1| - 0.047 12.5 7.6 0.051 12.4 5.2 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Ax_dynein_light PF10211.4 gi|20089591|ref|NP_615666.1| - 0.047 13.5 9.8 0.64 9.8 1.6 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain Mnd1 PF03962.10 gi|20089591|ref|NP_615666.1| - 0.057 13.0 8.3 0.22 11.1 5.7 1.7 1 1 0 1 1 1 0 Mnd1 family FlaC_arch PF05377.6 gi|20089591|ref|NP_615666.1| - 0.064 13.1 10.9 4.3 7.3 1.1 3.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) TroA PF01297.12 gi|20089591|ref|NP_615666.1| - 0.065 12.4 0.1 0.12 11.5 0.0 1.5 1 1 0 1 1 1 0 Periplasmic solute binding protein family BLOC1_2 PF10046.4 gi|20089591|ref|NP_615666.1| - 0.073 13.2 5.2 0.54 10.4 1.0 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CAMP_factor PF07373.6 gi|20089591|ref|NP_615666.1| - 0.075 12.5 0.7 0.1 12.0 0.4 1.4 1 1 0 1 1 1 0 CAMP factor (Cfa) GAS PF13851.1 gi|20089591|ref|NP_615666.1| - 0.076 12.1 9.0 0.19 10.9 1.9 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF3829 PF12889.2 gi|20089591|ref|NP_615666.1| - 0.084 12.0 4.0 0.1 11.8 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) DUF2762 PF10960.3 gi|20089591|ref|NP_615666.1| - 0.099 12.3 0.4 0.099 12.3 0.3 2.1 2 2 0 2 2 2 0 Protein of unknown function (DUF2762) OmpH PF03938.9 gi|20089591|ref|NP_615666.1| - 0.1 12.5 2.7 0.11 12.4 0.1 1.9 1 1 0 2 2 2 0 Outer membrane protein (OmpH-like) LXG PF04740.7 gi|20089591|ref|NP_615666.1| - 0.11 12.2 6.5 0.15 11.8 4.2 1.4 1 1 0 1 1 1 0 LXG domain of WXG superfamily USP8_interact PF08941.5 gi|20089591|ref|NP_615666.1| - 0.13 11.5 2.9 0.28 10.4 2.0 1.7 1 1 0 1 1 1 0 USP8 interacting Vps51 PF08700.6 gi|20089591|ref|NP_615666.1| - 0.16 11.8 5.1 2.7 7.9 0.7 2.6 2 1 0 2 2 2 0 Vps51/Vps67 4HB_MCP_1 PF12729.2 gi|20089591|ref|NP_615666.1| - 0.16 11.2 6.9 0.19 11.0 4.8 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction CorA PF01544.13 gi|20089591|ref|NP_615666.1| - 0.18 10.7 6.4 0.67 8.9 0.3 2.5 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Reo_sigmaC PF04582.7 gi|20089591|ref|NP_615666.1| - 0.21 10.7 1.1 0.37 9.9 0.7 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein DUF964 PF06133.6 gi|20089591|ref|NP_615666.1| - 0.22 11.5 4.9 0.87 9.6 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF964) COG2 PF06148.6 gi|20089591|ref|NP_615666.1| - 0.24 11.2 5.9 2.1 8.2 3.1 2.5 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF342 PF03961.8 gi|20089591|ref|NP_615666.1| - 0.27 9.6 7.9 0.52 8.6 5.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) FliD_C PF07195.7 gi|20089591|ref|NP_615666.1| - 0.28 10.4 5.2 1 8.6 1.0 2.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DivIVA PF05103.8 gi|20089591|ref|NP_615666.1| - 0.31 11.0 5.9 0.35 10.9 3.1 1.9 1 1 1 2 2 2 0 DivIVA protein Prefoldin PF02996.12 gi|20089591|ref|NP_615666.1| - 0.31 10.6 6.4 1.4 8.6 0.3 2.5 1 1 1 2 2 2 0 Prefoldin subunit Cytochrom_B562 PF07361.6 gi|20089591|ref|NP_615666.1| - 0.33 11.3 3.7 0.41 11.0 1.3 2.0 1 1 1 2 2 2 0 Cytochrome b562 Syntaxin_2 PF14523.1 gi|20089591|ref|NP_615666.1| - 0.33 11.0 4.8 3.5 7.7 3.3 2.2 1 1 0 1 1 1 0 Syntaxin-like protein ISG65-75 PF11727.3 gi|20089591|ref|NP_615666.1| - 0.35 9.8 4.2 0.42 9.6 2.9 1.3 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF904 PF06005.7 gi|20089591|ref|NP_615666.1| - 0.36 11.1 9.0 54 4.1 6.2 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|20089591|ref|NP_615666.1| - 0.38 10.7 10.6 0.26 11.2 0.9 2.9 2 1 1 3 3 3 0 bZIP transcription factor DUF972 PF06156.8 gi|20089591|ref|NP_615666.1| - 0.48 10.8 8.2 4.3 7.7 3.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Syntaxin PF00804.20 gi|20089591|ref|NP_615666.1| - 0.48 10.6 8.6 2.9 8.1 2.1 2.4 1 1 1 2 2 2 0 Syntaxin Spc24 PF08286.6 gi|20089591|ref|NP_615666.1| - 0.51 10.0 9.3 2.3 7.9 3.8 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 MtrB PF05440.7 gi|20089591|ref|NP_615666.1| - 0.59 10.2 3.4 3 7.9 0.2 2.6 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B Fib_alpha PF08702.5 gi|20089591|ref|NP_615666.1| - 0.75 9.9 6.0 3.9 7.5 4.2 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family TBPIP PF07106.8 gi|20089591|ref|NP_615666.1| - 0.78 9.2 11.5 5.3 6.5 2.4 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Snapin_Pallidin PF14712.1 gi|20089591|ref|NP_615666.1| - 0.81 10.0 5.1 3 8.2 0.5 2.3 1 1 1 2 2 2 0 Snapin/Pallidin DUF1664 PF07889.7 gi|20089591|ref|NP_615666.1| - 0.82 9.4 6.3 1.8 8.3 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Tht1 PF04163.7 gi|20089591|ref|NP_615666.1| - 1.1 7.5 6.3 1.3 7.3 4.4 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein ORF6C PF10552.4 gi|20089591|ref|NP_615666.1| - 1.3 8.8 6.4 7 6.4 0.5 2.5 1 1 2 3 3 3 0 ORF6C domain DASH_Dam1 PF08653.5 gi|20089591|ref|NP_615666.1| - 1.3 8.8 4.4 17 5.2 1.4 3.4 2 1 2 4 4 4 0 DASH complex subunit Dam1 CDC37_N PF03234.9 gi|20089591|ref|NP_615666.1| - 1.4 9.1 9.9 1.8 8.8 6.9 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Fzo_mitofusin PF04799.8 gi|20089591|ref|NP_615666.1| - 1.4 8.2 5.7 6.1 6.1 0.3 2.2 1 1 1 2 2 2 0 fzo-like conserved region DUF4140 PF13600.1 gi|20089591|ref|NP_615666.1| - 1.9 8.9 5.6 4.3 7.8 0.7 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Med4 PF10018.4 gi|20089591|ref|NP_615666.1| - 2.2 7.6 7.1 0.65 9.3 1.0 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Phlebovirus_NSM PF07246.6 gi|20089591|ref|NP_615666.1| - 2.5 7.1 9.6 1.6 7.8 2.8 2.0 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M EMP24_GP25L PF01105.19 gi|20089591|ref|NP_615666.1| - 2.6 7.7 7.2 6.2 6.4 0.7 2.1 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD TPR_MLP1_2 PF07926.7 gi|20089591|ref|NP_615666.1| - 4.2 7.1 9.9 2.1 8.0 0.9 2.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Enkurin PF13864.1 gi|20089591|ref|NP_615666.1| - 8.3 6.6 11.4 2.4 8.4 1.4 2.5 2 1 1 3 3 2 0 Calmodulin-binding Methyltransf_3 PF01596.12 gi|20089592|ref|NP_615667.1| - 7.7e-24 83.8 0.0 1e-22 80.2 0.0 2.0 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|20089592|ref|NP_615667.1| - 1.4e-14 54.8 0.0 2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089592|ref|NP_615667.1| - 1.1e-07 32.4 0.0 1.7e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089592|ref|NP_615667.1| - 1.4e-06 27.9 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|20089592|ref|NP_615667.1| - 9.7e-05 21.9 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|20089592|ref|NP_615667.1| - 0.00072 19.5 0.0 0.00092 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089592|ref|NP_615667.1| - 0.00098 19.4 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089592|ref|NP_615667.1| - 0.001 18.4 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|20089592|ref|NP_615667.1| - 0.0011 18.0 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|20089592|ref|NP_615667.1| - 0.0026 17.3 0.0 0.0042 16.6 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF1442 PF07279.6 gi|20089592|ref|NP_615667.1| - 0.013 14.5 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) Methyltransf_11 PF08241.7 gi|20089592|ref|NP_615667.1| - 0.02 15.3 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|20089592|ref|NP_615667.1| - 0.064 12.8 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 CmcI PF04989.7 gi|20089592|ref|NP_615667.1| - 0.098 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase NurA PF09376.5 gi|20089593|ref|NP_615668.1| - 5e-29 101.5 0.0 6.7e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|20089594|ref|NP_615669.1| - 2.5e-25 89.5 0.0 7.2e-24 84.7 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|20089594|ref|NP_615669.1| - 8.6e-12 45.3 0.0 2.2e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|20089594|ref|NP_615669.1| - 1.4e-06 26.9 0.0 0.002 16.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|20089594|ref|NP_615669.1| - 2.7e-05 24.3 0.0 0.0048 17.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|20089594|ref|NP_615669.1| - 0.00017 21.0 0.0 0.072 12.5 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|20089594|ref|NP_615669.1| - 0.00071 19.7 1.3 0.59 10.3 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|20089594|ref|NP_615669.1| - 0.0013 18.2 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|20089594|ref|NP_615669.1| - 0.0042 16.9 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.1 gi|20089594|ref|NP_615669.1| - 0.0048 16.8 0.0 0.33 10.9 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|20089594|ref|NP_615669.1| - 0.0053 15.4 0.0 0.0088 14.7 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.5 gi|20089594|ref|NP_615669.1| - 0.013 15.4 0.0 0.092 12.6 0.0 2.4 2 0 0 2 2 2 0 HAS barrel domain T2SE PF00437.15 gi|20089594|ref|NP_615669.1| - 0.019 13.8 0.0 0.044 12.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|20089594|ref|NP_615669.1| - 0.032 14.0 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain SopD PF11047.3 gi|20089594|ref|NP_615669.1| - 0.033 13.1 0.2 0.38 9.6 0.0 2.1 2 0 0 2 2 2 0 Salmonella outer protein D Zot PF05707.7 gi|20089594|ref|NP_615669.1| - 0.048 13.1 0.0 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) RNA_helicase PF00910.17 gi|20089594|ref|NP_615669.1| - 0.048 13.8 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|20089594|ref|NP_615669.1| - 0.055 12.4 0.0 0.4 9.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF4588 PF15251.1 gi|20089594|ref|NP_615669.1| - 0.08 12.8 1.6 0.15 11.9 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4588) DUF605 PF04652.11 gi|20089594|ref|NP_615669.1| - 0.81 9.0 6.8 1.3 8.2 4.7 1.2 1 0 0 1 1 1 0 Vta1 like BpuJI_N PF11564.3 gi|20089595|ref|NP_615670.1| - 0.051 12.5 0.1 0.051 12.5 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BpuJI - N terminal Flavoprotein PF02441.14 gi|20089596|ref|NP_615671.1| - 3.8e-32 110.6 0.1 4.9e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.17 gi|20089598|ref|NP_615673.1| - 7.5e-11 42.1 1.1 7.5e-11 42.1 0.7 2.4 2 1 0 2 2 2 1 HD domain DUF2482 PF10655.4 gi|20089598|ref|NP_615673.1| - 0.082 12.9 0.0 0.27 11.3 0.0 1.9 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) UPF0052 PF01933.13 gi|20089599|ref|NP_615674.1| - 1.6e-58 198.4 0.0 2.1e-58 198.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 FmdE PF02663.9 gi|20089600|ref|NP_615675.1| - 4.2e-52 175.4 0.3 3.9e-24 85.0 0.0 4.0 4 0 0 4 4 4 3 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Rad60-SLD PF11976.3 gi|20089601|ref|NP_615676.1| - 0.089 12.4 1.1 0.13 12.0 0.8 1.2 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like PRP1_N PF06424.7 gi|20089601|ref|NP_615676.1| - 0.17 12.1 0.9 0.22 11.8 0.6 1.1 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal DUF919 PF06034.6 gi|20089601|ref|NP_615676.1| - 3.2 7.4 10.9 5.9 6.5 7.6 1.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Pribosyltran PF00156.22 gi|20089602|ref|NP_615677.1| - 1.2e-21 76.6 0.6 1.7e-21 76.2 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|20089602|ref|NP_615677.1| - 6.3e-05 22.2 0.0 9.6e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|20089602|ref|NP_615677.1| - 0.00034 19.9 0.1 0.00049 19.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Diphthamide_syn PF01866.12 gi|20089603|ref|NP_615678.1| - 9.7e-104 346.8 0.0 1.1e-103 346.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrmA PF06325.8 gi|20089604|ref|NP_615679.1| - 2.2e-15 56.5 0.0 2.9e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|20089604|ref|NP_615679.1| - 3.4e-14 52.5 0.0 4.3e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20089604|ref|NP_615679.1| - 2.2e-12 47.0 0.0 3e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089604|ref|NP_615679.1| - 1.3e-11 44.3 0.1 2e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089604|ref|NP_615679.1| - 4.5e-11 43.3 0.0 6e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|20089604|ref|NP_615679.1| - 5.9e-10 39.0 0.0 6.8e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|20089604|ref|NP_615679.1| - 3.2e-07 30.6 0.0 5.3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089604|ref|NP_615679.1| - 2.5e-06 27.8 0.0 4.5e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|20089604|ref|NP_615679.1| - 9.7e-05 21.4 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_23 PF13489.1 gi|20089604|ref|NP_615679.1| - 0.00014 21.6 0.0 0.00019 21.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|20089604|ref|NP_615679.1| - 0.00031 20.4 0.0 0.00039 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|20089604|ref|NP_615679.1| - 0.00078 18.8 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|20089604|ref|NP_615679.1| - 0.002 17.7 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|20089604|ref|NP_615679.1| - 0.0037 16.8 0.0 0.005 16.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.11 gi|20089604|ref|NP_615679.1| - 0.0045 16.5 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.13 gi|20089604|ref|NP_615679.1| - 0.0069 15.5 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|20089604|ref|NP_615679.1| - 0.042 14.3 0.0 0.075 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.11 gi|20089604|ref|NP_615679.1| - 0.073 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 ECR1_N PF14382.1 gi|20089605|ref|NP_615680.1| - 3.6e-10 38.9 0.3 7.2e-10 37.9 0.2 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|20089605|ref|NP_615680.1| - 5e-06 26.3 1.2 5e-06 26.3 0.8 2.4 2 1 0 2 2 2 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|20089605|ref|NP_615680.1| - 0.00046 20.2 5.5 0.16 12.0 0.7 2.5 2 0 0 2 2 2 2 S1 RNA binding domain ALS_ss_C PF10369.4 gi|20089605|ref|NP_615680.1| - 0.018 14.7 0.9 0.28 10.9 0.0 2.5 1 1 0 2 2 2 0 Small subunit of acetolactate synthase HypA PF01155.14 gi|20089605|ref|NP_615680.1| - 0.034 13.8 0.4 0.056 13.1 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GDH_N PF12466.3 gi|20089605|ref|NP_615680.1| - 0.11 12.5 0.2 0.24 11.4 0.1 1.6 1 0 0 1 1 1 0 Glutamate dehydrogenase N terminal zf-RING_5 PF14634.1 gi|20089605|ref|NP_615680.1| - 0.17 11.6 1.3 0.28 10.9 0.9 1.3 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|20089605|ref|NP_615680.1| - 0.23 11.1 1.7 0.35 10.5 1.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Cementoin PF10511.4 gi|20089605|ref|NP_615680.1| - 3.6 7.4 9.8 52 3.8 0.4 4.6 4 1 1 5 5 5 0 Trappin protein transglutaminase binding domain RNA_pol_L_2 PF13656.1 gi|20089606|ref|NP_615681.1| - 1e-22 79.3 0.3 1.2e-22 79.1 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|20089606|ref|NP_615681.1| - 1.1e-05 24.4 0.1 2.2e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SseB_C PF14581.1 gi|20089606|ref|NP_615681.1| - 0.13 12.0 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain SLA_LP_auto_ag PF05889.8 gi|20089607|ref|NP_615682.1| - 7.6e-56 189.2 0.0 1.5e-55 188.2 0.0 1.4 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|20089607|ref|NP_615682.1| - 7.6e-15 54.5 0.0 1.2e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|20089607|ref|NP_615682.1| - 2.1e-09 36.8 0.0 4e-09 35.9 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|20089607|ref|NP_615682.1| - 0.001 18.2 0.0 0.0014 17.7 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|20089607|ref|NP_615682.1| - 0.041 12.3 0.0 0.064 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain OKR_DC_1 PF01276.15 gi|20089607|ref|NP_615682.1| - 0.08 11.4 0.0 0.27 9.7 0.0 1.7 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Rib PF08428.5 gi|20089607|ref|NP_615682.1| - 0.098 12.4 0.2 0.2 11.4 0.2 1.4 1 0 0 1 1 1 0 Rib/alpha-like repeat DegT_DnrJ_EryC1 PF01041.12 gi|20089607|ref|NP_615682.1| - 0.1 11.5 0.0 0.26 10.2 0.0 1.6 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_20 PF12840.2 gi|20089608|ref|NP_615683.1| - 8.6e-06 25.4 0.0 1.3e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|20089608|ref|NP_615683.1| - 2.7e-05 24.1 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|20089608|ref|NP_615683.1| - 0.0021 17.6 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|20089608|ref|NP_615683.1| - 0.0025 17.5 0.2 0.0043 16.8 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|20089608|ref|NP_615683.1| - 0.0047 16.6 0.0 0.013 15.2 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|20089608|ref|NP_615683.1| - 0.011 15.0 0.1 0.031 13.6 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20089609|ref|NP_615684.1| - 4.5e-07 29.4 0.1 0.021 14.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB LIM PF00412.17 gi|20089609|ref|NP_615684.1| - 0.0029 17.6 1.0 0.0076 16.2 0.7 1.7 1 0 0 1 1 1 1 LIM domain HTH_24 PF13412.1 gi|20089609|ref|NP_615684.1| - 0.0029 16.9 0.2 0.0075 15.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding NMD3 PF04981.8 gi|20089609|ref|NP_615684.1| - 0.0033 16.5 0.9 0.0056 15.8 0.6 1.4 1 0 0 1 1 1 1 NMD3 family HTH_20 PF12840.2 gi|20089609|ref|NP_615684.1| - 0.0043 16.8 0.0 0.036 13.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|20089609|ref|NP_615684.1| - 0.0082 16.2 0.0 0.047 13.7 0.0 2.0 2 0 0 2 2 2 1 Penicillinase repressor Zn-ribbon_8 PF09723.5 gi|20089609|ref|NP_615684.1| - 0.018 14.9 1.0 0.049 13.5 0.7 1.8 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|20089609|ref|NP_615684.1| - 0.035 13.4 1.1 0.098 11.9 0.8 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|20089609|ref|NP_615684.1| - 0.047 13.2 2.9 0.18 11.3 1.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|20089609|ref|NP_615684.1| - 0.048 12.8 0.2 0.11 11.7 0.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain HTH_28 PF13518.1 gi|20089609|ref|NP_615684.1| - 0.052 13.5 0.0 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4428 PF14471.1 gi|20089609|ref|NP_615684.1| - 0.053 13.2 2.5 0.066 12.9 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) HTH_IclR PF09339.5 gi|20089609|ref|NP_615684.1| - 0.075 12.6 0.0 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain zf-B_box PF00643.19 gi|20089609|ref|NP_615684.1| - 0.11 12.3 0.7 0.77 9.7 0.0 2.3 2 0 0 2 2 2 0 B-box zinc finger Lar_restr_allev PF14354.1 gi|20089609|ref|NP_615684.1| - 0.26 11.6 2.5 0.32 11.3 0.6 2.1 2 1 0 2 2 1 0 Restriction alleviation protein Lar FUR PF01475.14 gi|20089609|ref|NP_615684.1| - 0.49 10.3 2.3 0.74 9.7 0.7 2.2 2 1 0 2 2 2 0 Ferric uptake regulator family YhfH PF14149.1 gi|20089609|ref|NP_615684.1| - 2.7 7.8 6.8 12 5.8 3.9 2.5 2 1 0 2 2 2 0 YhfH-like protein DUF2148 PF09918.4 gi|20089610|ref|NP_615685.1| - 2.6e-36 123.1 3.3 3.2e-36 122.8 0.9 1.9 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|20089610|ref|NP_615685.1| - 0.00012 21.5 0.4 0.00024 20.6 0.3 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster zf-UDP PF14569.1 gi|20089610|ref|NP_615685.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger Orn_Arg_deC_N PF02784.11 gi|20089611|ref|NP_615686.1| - 2.2e-39 135.1 0.0 2.7e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|20089611|ref|NP_615686.1| - 1.1e-16 60.5 0.0 1.6e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DNA_pol_B_thumb PF14791.1 gi|20089612|ref|NP_615687.1| - 3.1e-26 90.8 0.1 1.1e-25 89.0 0.1 2.0 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|20089612|ref|NP_615687.1| - 9.2e-20 70.6 3.5 1.6e-19 69.8 0.8 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain PHP PF02811.14 gi|20089612|ref|NP_615687.1| - 8.5e-16 58.2 0.2 1.1e-14 54.6 0.0 2.7 2 2 1 3 3 3 1 PHP domain HHH_5 PF14520.1 gi|20089612|ref|NP_615687.1| - 1.3e-12 47.7 5.3 1.4e-07 31.5 0.3 3.9 4 0 0 4 4 4 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|20089612|ref|NP_615687.1| - 2.2e-06 27.4 0.2 0.0045 16.8 0.0 3.4 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|20089612|ref|NP_615687.1| - 1.5e-05 24.8 0.7 0.021 14.7 0.0 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.18 gi|20089612|ref|NP_615687.1| - 0.00039 19.9 1.7 0.012 15.2 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|20089612|ref|NP_615687.1| - 0.0012 18.8 0.0 0.0041 17.1 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta palm DUF3701 PF12482.3 gi|20089612|ref|NP_615687.1| - 0.0023 17.6 0.0 0.82 9.4 0.0 2.7 1 1 0 2 2 2 1 Phage integrase protein HHH_6 PF14579.1 gi|20089612|ref|NP_615687.1| - 0.018 15.0 0.1 0.29 11.1 0.0 2.9 1 1 1 2 2 2 0 Helix-hairpin-helix motif DNA_ligase_A_M PF01068.16 gi|20089613|ref|NP_615688.1| - 9e-54 181.9 2.9 1.8e-53 180.9 2.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|20089613|ref|NP_615688.1| - 7.6e-48 162.6 0.4 2e-47 161.3 0.3 1.7 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|20089613|ref|NP_615688.1| - 6.4e-23 80.9 0.0 2.6e-22 79.0 0.0 2.1 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|20089613|ref|NP_615688.1| - 1.3e-06 27.9 0.1 0.00055 19.5 0.0 2.6 2 0 0 2 2 2 2 DNA ligase OB-like domain Vps5 PF09325.5 gi|20089613|ref|NP_615688.1| - 0.0023 17.2 0.1 0.0055 15.9 0.1 1.6 1 0 0 1 1 1 1 Vps5 C terminal like DUF217 PF02697.9 gi|20089614|ref|NP_615689.1| - 0.018 15.2 0.1 0.036 14.2 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 IPK PF03770.11 gi|20089616|ref|NP_615691.1| - 3.4e-08 33.3 1.1 4.6e-07 29.6 0.8 2.5 1 1 0 1 1 1 1 Inositol polyphosphate kinase DUF3130 PF11328.3 gi|20089616|ref|NP_615691.1| - 0.091 12.8 0.0 0.9 9.6 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3130 GyrI-like PF06445.10 gi|20089617|ref|NP_615692.1| - 0.00027 21.0 0.0 0.00032 20.7 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain GyrI-like PF06445.10 gi|20089618|ref|NP_615693.1| - 1.4e-12 47.8 0.0 1.5e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain PEMT PF04191.8 gi|20089619|ref|NP_615694.1| - 8e-12 45.2 3.7 8e-12 45.2 2.6 2.5 3 1 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|20089619|ref|NP_615694.1| - 4.5e-10 39.6 1.1 4.5e-10 39.6 0.8 2.1 3 0 0 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1469 PF07332.6 gi|20089619|ref|NP_615694.1| - 0.0053 16.4 4.6 0.0053 16.4 3.2 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF1469) DUF2371 PF10177.4 gi|20089619|ref|NP_615694.1| - 0.043 13.6 0.1 0.072 12.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF1352 PF07086.7 gi|20089619|ref|NP_615694.1| - 0.31 10.6 4.2 0.51 9.9 2.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1352) 4HBT PF03061.17 gi|20089620|ref|NP_615695.1| - 6.5e-12 45.4 0.1 1.1e-11 44.7 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|20089620|ref|NP_615695.1| - 4.9e-06 26.5 0.4 8.9e-06 25.7 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.1 gi|20089620|ref|NP_615695.1| - 0.053 12.6 0.1 0.17 11.0 0.0 1.6 1 1 1 2 2 2 0 Polyketide synthase dehydratase Pep_deformylase PF01327.16 gi|20089620|ref|NP_615695.1| - 0.06 12.7 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 Polypeptide deformylase Abhydrolase_5 PF12695.2 gi|20089621|ref|NP_615696.1| - 1.5e-13 50.6 0.1 2e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|20089621|ref|NP_615696.1| - 1.3e-08 34.9 0.1 2.3e-05 24.3 0.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|20089621|ref|NP_615696.1| - 7e-05 22.2 0.0 0.0001 21.6 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|20089621|ref|NP_615696.1| - 0.00042 19.8 0.0 0.00055 19.4 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|20089621|ref|NP_615696.1| - 0.00047 19.4 0.2 0.022 14.0 0.0 2.1 1 1 1 2 2 2 1 Prolyl oligopeptidase family PAF-AH_p_II PF03403.8 gi|20089621|ref|NP_615696.1| - 0.0026 16.1 0.1 0.0036 15.6 0.1 1.3 1 1 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_1 PF00561.15 gi|20089621|ref|NP_615696.1| - 0.01 15.4 0.4 0.11 12.0 0.1 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|20089621|ref|NP_615696.1| - 0.029 13.9 0.6 0.066 12.7 0.4 1.5 1 0 0 1 1 1 0 PGAP1-like protein BAAT_C PF08840.6 gi|20089621|ref|NP_615696.1| - 0.29 10.8 2.3 2.4 7.8 0.3 2.1 1 1 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Fer4 PF00037.22 gi|20089624|ref|NP_615699.1| - 6.8e-13 47.6 13.2 2e-06 27.1 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Pyridox_oxidase PF01243.15 gi|20089624|ref|NP_615699.1| - 4.7e-10 39.3 0.0 7.1e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fer4_9 PF13187.1 gi|20089624|ref|NP_615699.1| - 1.3e-08 34.9 32.0 1.4e-05 25.2 8.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089624|ref|NP_615699.1| - 3.6e-08 33.6 21.7 7.3e-07 29.4 7.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089624|ref|NP_615699.1| - 9e-08 32.7 11.5 0.0018 18.9 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|20089624|ref|NP_615699.1| - 1.2e-07 31.3 13.1 3.5e-05 23.4 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089624|ref|NP_615699.1| - 3.4e-07 29.9 11.2 7.2e-07 28.9 7.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089624|ref|NP_615699.1| - 4.7e-07 29.5 6.3 0.0017 18.2 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089624|ref|NP_615699.1| - 2.2e-06 27.2 12.8 0.00055 19.7 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20089624|ref|NP_615699.1| - 9.6e-05 22.3 12.5 0.0031 17.5 9.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089624|ref|NP_615699.1| - 0.00069 19.9 13.9 0.097 13.0 2.1 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20089624|ref|NP_615699.1| - 0.0012 19.2 16.5 0.013 16.0 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20089624|ref|NP_615699.1| - 0.0014 18.9 12.0 0.15 12.5 1.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Pyridox_ox_2 PF12900.2 gi|20089624|ref|NP_615699.1| - 0.0041 16.9 0.0 0.0059 16.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fer4_4 PF12800.2 gi|20089624|ref|NP_615699.1| - 0.0043 17.2 14.9 0.14 12.5 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|20089624|ref|NP_615699.1| - 0.02 14.7 4.0 0.037 13.8 2.7 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20089624|ref|NP_615699.1| - 0.13 12.6 13.1 0.22 11.9 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|20089624|ref|NP_615699.1| - 0.41 11.2 9.9 3.6 8.2 1.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF3267 PF11667.3 gi|20089625|ref|NP_615700.1| - 1.7e-24 86.1 4.7 1.7e-24 86.1 3.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) MarR PF01047.17 gi|20089628|ref|NP_615703.1| - 1.5e-14 53.3 0.0 2.7e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|20089628|ref|NP_615703.1| - 2.1e-10 40.0 0.0 4.1e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|20089628|ref|NP_615703.1| - 7.4e-08 32.3 0.2 2.1e-07 30.8 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|20089628|ref|NP_615703.1| - 4.6e-07 30.0 0.0 1.5e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|20089628|ref|NP_615703.1| - 5.4e-06 26.0 0.1 1.3e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|20089628|ref|NP_615703.1| - 1.2e-05 24.5 0.0 2.4e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|20089628|ref|NP_615703.1| - 4.4e-05 23.3 0.1 9e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|20089628|ref|NP_615703.1| - 6.2e-05 22.7 0.1 0.0002 21.0 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|20089628|ref|NP_615703.1| - 0.00036 19.7 0.0 0.0011 18.2 0.0 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 FeoC PF09012.5 gi|20089628|ref|NP_615703.1| - 0.00048 19.7 0.0 0.0016 18.1 0.0 1.9 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|20089628|ref|NP_615703.1| - 0.0013 18.3 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|20089628|ref|NP_615703.1| - 0.0013 18.3 0.0 0.003 17.1 0.0 1.7 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|20089628|ref|NP_615703.1| - 0.0018 17.8 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|20089628|ref|NP_615703.1| - 0.0042 16.8 0.2 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|20089628|ref|NP_615703.1| - 0.0048 16.2 0.2 0.012 14.9 0.1 1.6 2 0 0 2 2 1 1 CodY helix-turn-helix domain Rrf2 PF02082.15 gi|20089628|ref|NP_615703.1| - 0.0082 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MerR PF00376.18 gi|20089628|ref|NP_615703.1| - 0.0093 15.5 0.0 0.023 14.2 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_36 PF13730.1 gi|20089628|ref|NP_615703.1| - 0.0096 16.0 0.0 0.033 14.3 0.0 2.0 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|20089628|ref|NP_615703.1| - 0.02 14.4 0.0 0.046 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|20089628|ref|NP_615703.1| - 0.023 14.6 0.2 0.066 13.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|20089628|ref|NP_615703.1| - 0.034 13.8 0.0 0.4 10.4 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|20089628|ref|NP_615703.1| - 0.039 13.9 0.0 0.13 12.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|20089628|ref|NP_615703.1| - 0.046 13.8 0.3 0.61 10.1 0.0 2.6 3 0 0 3 3 3 0 Penicillinase repressor HTH_10 PF04967.7 gi|20089628|ref|NP_615703.1| - 0.047 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain VirE PF05272.6 gi|20089628|ref|NP_615703.1| - 0.065 12.6 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Virulence-associated protein E HTH_1 PF00126.22 gi|20089628|ref|NP_615703.1| - 0.072 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family PP2C_C PF07830.8 gi|20089628|ref|NP_615703.1| - 0.08 13.0 0.2 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Ribosomal_S21 PF01165.15 gi|20089628|ref|NP_615703.1| - 0.23 10.9 3.1 0.62 9.5 0.1 2.6 2 0 0 2 2 2 0 Ribosomal protein S21 APH PF01636.18 gi|20089629|ref|NP_615704.1| - 6.7e-08 32.5 0.0 8e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|20089629|ref|NP_615704.1| - 0.0048 16.2 0.0 0.079 12.2 0.0 2.3 1 1 0 2 2 2 1 RIO1 family LEM PF03020.10 gi|20089629|ref|NP_615704.1| - 0.028 13.8 0.1 0.096 12.1 0.0 2.0 1 0 0 1 1 1 0 LEM domain ACR_tran PF00873.14 gi|20089630|ref|NP_615705.1| - 0.24 8.7 1.4 0.34 8.2 1.0 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family DUF3487 PF11990.3 gi|20089630|ref|NP_615705.1| - 3.4 7.0 5.9 1.1 8.6 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) DUF457 PF04307.9 gi|20089630|ref|NP_615705.1| - 8.3 5.7 17.7 0.37 10.1 5.6 2.5 1 1 1 2 2 2 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4064 PF13273.1 gi|20089630|ref|NP_615705.1| - 9.5 6.3 10.8 0.075 13.1 1.3 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) Rhodanese PF00581.15 gi|20089631|ref|NP_615706.1| - 5.4e-23 81.4 0.0 6.6e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NAD_binding_8 PF13450.1 gi|20089632|ref|NP_615707.1| - 3.6e-09 36.5 0.0 3.3e-08 33.4 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|20089632|ref|NP_615707.1| - 3.9e-05 23.9 0.1 0.0075 16.6 0.0 3.1 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|20089632|ref|NP_615707.1| - 4e-05 22.2 0.0 6.1e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|20089632|ref|NP_615707.1| - 0.00037 19.5 0.0 0.001 18.0 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|20089632|ref|NP_615707.1| - 0.0041 17.0 0.1 0.008 16.0 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|20089632|ref|NP_615707.1| - 0.0055 15.8 0.0 0.008 15.2 0.0 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|20089632|ref|NP_615707.1| - 0.017 13.9 0.0 0.026 13.3 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain FAD_binding_3 PF01494.14 gi|20089632|ref|NP_615707.1| - 0.024 13.6 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.1 gi|20089632|ref|NP_615707.1| - 0.028 14.5 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|20089632|ref|NP_615707.1| - 0.032 13.8 0.0 0.07 12.7 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|20089632|ref|NP_615707.1| - 0.08 11.7 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Coatomer_b_Cpla PF14806.1 gi|20089632|ref|NP_615707.1| - 0.15 11.7 0.2 8.2 6.1 0.0 2.5 3 0 0 3 3 3 0 Coatomer beta subunit appendage platform Maf PF02545.9 gi|20089633|ref|NP_615708.1| - 4.8e-52 175.9 0.0 5.6e-52 175.6 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein tRNA-synt_1e PF01406.14 gi|20089634|ref|NP_615709.1| - 4.9e-103 344.3 0.0 6.4e-103 344.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|20089634|ref|NP_615709.1| - 6e-16 58.4 0.1 2.1e-15 56.7 0.0 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|20089634|ref|NP_615709.1| - 1.7e-14 53.3 0.1 6.4e-07 28.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|20089634|ref|NP_615709.1| - 4.8e-10 38.6 0.0 0.00079 18.1 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|20089634|ref|NP_615709.1| - 2.4e-08 32.4 0.0 5.8e-07 27.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|20089634|ref|NP_615709.1| - 0.01 14.5 0.0 0.026 13.1 0.0 1.8 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain DUF1447 PF07288.6 gi|20089634|ref|NP_615709.1| - 0.04 13.7 0.1 16 5.3 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) HTH_20 PF12840.2 gi|20089635|ref|NP_615710.1| - 2.4e-06 27.2 0.1 2.5e-05 23.9 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|20089635|ref|NP_615710.1| - 8e-06 25.5 0.1 1.7e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|20089635|ref|NP_615710.1| - 1.9e-05 24.2 0.0 9.2e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Mrr_N PF14338.1 gi|20089635|ref|NP_615710.1| - 0.054 13.5 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Mrr N-terminal domain DUF4364 PF14277.1 gi|20089635|ref|NP_615710.1| - 0.058 13.0 0.1 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_24 PF13412.1 gi|20089635|ref|NP_615710.1| - 0.06 12.7 0.5 0.42 10.0 0.0 2.8 4 1 0 4 4 4 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|20089635|ref|NP_615710.1| - 0.081 12.6 0.1 0.26 11.0 0.1 1.9 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rio2_N PF09202.6 gi|20089635|ref|NP_615710.1| - 0.082 12.9 0.0 0.23 11.5 0.0 1.8 1 0 0 1 1 1 0 Rio2, N-terminal Lon_C PF05362.8 gi|20089637|ref|NP_615712.1| - 1.6e-11 43.8 1.5 3.5e-11 42.7 1.1 1.6 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF4298 PF14131.1 gi|20089637|ref|NP_615712.1| - 0.0042 16.9 0.7 0.0069 16.2 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4298) ATG16 PF08614.6 gi|20089637|ref|NP_615712.1| - 0.0069 16.2 0.4 0.011 15.5 0.3 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) bZIP_2 PF07716.10 gi|20089637|ref|NP_615712.1| - 0.013 15.3 4.7 0.014 15.2 2.5 1.6 1 1 0 1 1 1 0 Basic region leucine zipper Laminin_II PF06009.7 gi|20089637|ref|NP_615712.1| - 0.016 14.9 0.2 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 Laminin Domain II Cluap1 PF10234.4 gi|20089637|ref|NP_615712.1| - 0.025 13.7 0.7 0.043 13.0 0.5 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 Herpes_UL6 PF01763.11 gi|20089637|ref|NP_615712.1| - 0.029 12.5 0.2 0.037 12.1 0.2 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like Med4 PF10018.4 gi|20089637|ref|NP_615712.1| - 0.047 13.0 0.8 0.075 12.4 0.5 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Tropomyosin_1 PF12718.2 gi|20089637|ref|NP_615712.1| - 0.051 13.4 1.2 0.08 12.7 0.9 1.2 1 0 0 1 1 1 0 Tropomyosin like Lipocalin_7 PF14651.1 gi|20089637|ref|NP_615712.1| - 0.054 13.2 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Lipocalin / cytosolic fatty-acid binding protein family IncA PF04156.9 gi|20089637|ref|NP_615712.1| - 0.054 13.0 6.8 0.12 11.9 4.7 1.5 1 1 0 1 1 1 0 IncA protein Nnf1 PF03980.9 gi|20089637|ref|NP_615712.1| - 0.072 13.0 1.5 0.12 12.4 1.0 1.3 1 0 0 1 1 1 0 Nnf1 XhlA PF10779.4 gi|20089637|ref|NP_615712.1| - 0.15 11.9 1.3 0.34 10.8 0.9 1.5 1 0 0 1 1 1 0 Haemolysin XhlA DUF1447 PF07288.6 gi|20089637|ref|NP_615712.1| - 0.29 10.9 5.0 0.089 12.5 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) BLOC1_2 PF10046.4 gi|20089637|ref|NP_615712.1| - 0.35 11.0 3.9 0.34 11.0 1.5 1.8 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TSC22 PF01166.13 gi|20089637|ref|NP_615712.1| - 1.2 9.1 4.1 1.6 8.7 1.7 2.0 1 1 1 2 2 2 0 TSC-22/dip/bun family Katanin_con80 PF13925.1 gi|20089638|ref|NP_615713.1| - 0.037 13.7 0.1 0.049 13.3 0.1 1.1 1 0 0 1 1 1 0 con80 domain of Katanin IncA PF04156.9 gi|20089638|ref|NP_615713.1| - 0.06 12.9 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 IncA protein Vps51 PF08700.6 gi|20089638|ref|NP_615713.1| - 0.063 13.1 0.2 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 Vps51/Vps67 Syntaxin PF00804.20 gi|20089638|ref|NP_615713.1| - 0.093 12.9 0.7 0.14 12.3 0.5 1.3 1 0 0 1 1 1 0 Syntaxin DUF4319 PF14203.1 gi|20089638|ref|NP_615713.1| - 0.11 12.0 1.2 0.21 11.1 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) BLOC1_2 PF10046.4 gi|20089638|ref|NP_615713.1| - 0.12 12.5 1.5 0.19 11.8 1.1 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIC PF04977.10 gi|20089638|ref|NP_615713.1| - 0.87 9.1 4.6 1.2 8.7 2.3 2.1 2 1 0 2 2 2 0 Septum formation initiator CBAH PF02275.13 gi|20089640|ref|NP_615715.1| - 3.3e-37 128.6 0.0 3.3e-36 125.3 0.0 1.9 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family Metallophos PF00149.23 gi|20089642|ref|NP_615717.1| - 3.2e-07 29.9 0.7 4.3e-07 29.5 0.5 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.11 gi|20089642|ref|NP_615717.1| - 0.0082 15.4 0.0 0.022 14.0 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B PocR PF10114.4 gi|20089643|ref|NP_615718.1| - 3.3e-70 234.7 0.0 1.1e-69 233.0 0.0 1.9 2 0 0 2 2 2 1 Sensory domain found in PocR MEDS PF14417.1 gi|20089643|ref|NP_615718.1| - 2.2e-62 209.5 0.5 9.2e-62 207.5 0.0 2.3 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.7 gi|20089643|ref|NP_615718.1| - 4.8e-35 119.2 1.5 1.5e-34 117.6 0.4 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.1 gi|20089643|ref|NP_615718.1| - 9.1e-28 96.6 0.0 2.4e-15 56.7 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|20089643|ref|NP_615718.1| - 2.4e-27 94.8 0.0 6.4e-16 58.2 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|20089643|ref|NP_615718.1| - 5.7e-23 81.0 0.0 3.4e-13 49.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|20089643|ref|NP_615718.1| - 4.1e-22 78.1 0.0 6.3e-12 45.2 0.0 3.8 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|20089643|ref|NP_615718.1| - 2.7e-12 46.3 0.1 6.9e-12 45.0 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20089643|ref|NP_615718.1| - 5.6e-05 22.8 0.0 0.0085 15.9 0.0 3.8 4 0 0 4 4 4 1 PAS domain HWE_HK PF07536.9 gi|20089643|ref|NP_615718.1| - 0.00044 20.6 1.3 0.0011 19.3 0.0 2.3 2 0 0 2 2 2 1 HWE histidine kinase PAS_7 PF12860.2 gi|20089643|ref|NP_615718.1| - 0.0055 16.7 0.5 9.4 6.2 0.0 4.2 4 1 0 4 4 4 1 PAS fold PAS_10 PF13596.1 gi|20089643|ref|NP_615718.1| - 0.047 13.9 0.0 5.8 7.2 0.0 3.0 2 0 0 2 2 2 0 PAS domain Sec34 PF04136.10 gi|20089643|ref|NP_615718.1| - 0.12 12.0 3.3 0.18 11.4 0.2 2.3 2 0 0 2 2 2 0 Sec34-like family HemX PF04375.9 gi|20089643|ref|NP_615718.1| - 4.8 5.6 7.2 0.17 10.4 0.0 2.0 3 0 0 3 3 3 0 HemX MEDS PF14417.1 gi|20089644|ref|NP_615719.1| - 1.1e-86 288.8 0.0 1.1e-85 285.5 0.0 2.7 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20089644|ref|NP_615719.1| - 3.9e-71 236.0 0.6 6.8e-19 68.1 0.0 5.6 5 0 0 5 5 5 5 PAS domain PocR PF10114.4 gi|20089644|ref|NP_615719.1| - 3.3e-70 234.7 0.0 8.4e-70 233.3 0.0 1.8 1 0 0 1 1 1 1 Sensory domain found in PocR PAS_3 PF08447.6 gi|20089644|ref|NP_615719.1| - 6.8e-49 163.9 0.1 3.7e-19 68.5 0.0 5.9 6 0 0 6 6 5 5 PAS fold PAS PF00989.19 gi|20089644|ref|NP_615719.1| - 7.2e-43 144.9 0.0 6e-13 48.5 0.0 5.9 6 0 0 6 6 6 4 PAS fold PAS_4 PF08448.5 gi|20089644|ref|NP_615719.1| - 8.4e-38 128.7 0.0 6.2e-11 42.3 0.0 5.5 5 0 0 5 5 5 4 PAS fold HisKA_2 PF07568.7 gi|20089644|ref|NP_615719.1| - 3.5e-35 119.6 2.7 6.9e-35 118.7 0.2 2.7 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|20089644|ref|NP_615719.1| - 5.8e-29 98.9 0.1 1.7e-09 37.1 0.0 5.0 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|20089644|ref|NP_615719.1| - 6.1e-12 45.2 0.2 1.3e-11 44.1 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|20089644|ref|NP_615719.1| - 1.9e-05 24.4 0.0 5.9e-05 22.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20089644|ref|NP_615719.1| - 0.0002 21.7 1.1 0.00096 19.5 0.0 2.7 2 0 0 2 2 2 1 HWE histidine kinase PAS_7 PF12860.2 gi|20089644|ref|NP_615719.1| - 0.0017 18.3 2.4 60 3.6 0.0 6.2 6 1 0 6 6 6 0 PAS fold MEKHLA PF08670.6 gi|20089644|ref|NP_615719.1| - 0.01 15.3 0.0 0.26 10.7 0.0 2.6 2 0 0 2 2 2 0 MEKHLA domain HATPase_c_3 PF13589.1 gi|20089644|ref|NP_615719.1| - 0.019 14.6 0.1 0.06 12.9 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HemX PF04375.9 gi|20089644|ref|NP_615719.1| - 0.97 7.9 4.3 0.14 10.7 0.1 1.6 2 0 0 2 2 2 0 HemX tRNA-synt_2 PF00152.15 gi|20089645|ref|NP_615720.1| - 8.1e-99 330.5 1.1 9.8e-99 330.2 0.8 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|20089645|ref|NP_615720.1| - 1.9e-15 56.4 0.0 3.8e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|20089645|ref|NP_615720.1| - 7.8e-08 31.8 0.2 0.00064 18.9 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Amidohydro_3 PF07969.6 gi|20089646|ref|NP_615721.1| - 6.6e-99 331.8 0.0 7.6e-99 331.6 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20089646|ref|NP_615721.1| - 2.5e-10 40.0 0.0 1.5e-09 37.5 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|20089646|ref|NP_615721.1| - 1e-07 31.9 0.1 0.00057 19.6 0.0 2.9 2 1 0 2 2 2 2 Amidohydrolase family SfsA PF03749.8 gi|20089646|ref|NP_615721.1| - 0.086 12.2 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 Sugar fermentation stimulation protein DEAD_assoc PF08494.6 gi|20089647|ref|NP_615722.1| - 2.4e-42 144.7 0.0 4.3e-42 143.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|20089647|ref|NP_615722.1| - 2e-32 112.0 0.0 1.3e-31 109.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|20089647|ref|NP_615722.1| - 7.5e-18 64.1 0.1 6.1e-16 58.0 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|20089647|ref|NP_615722.1| - 8.6e-06 25.7 0.0 1.8e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|20089647|ref|NP_615722.1| - 0.001 17.9 0.0 0.002 16.9 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain T4SS-DNA_transf PF02534.9 gi|20089647|ref|NP_615722.1| - 0.037 12.6 0.0 0.063 11.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_25 PF13481.1 gi|20089647|ref|NP_615722.1| - 0.16 11.3 1.0 1.1 8.6 0.0 2.8 3 1 0 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|20089648|ref|NP_615723.1| - 0.0013 18.7 0.1 0.019 14.9 0.1 2.9 2 1 0 2 2 2 1 AAA ATPase domain HEAT_2 PF13646.1 gi|20089648|ref|NP_615723.1| - 0.025 14.8 0.1 1.4 9.2 0.0 3.1 2 0 0 2 2 2 0 HEAT repeats UPF0150 PF03681.10 gi|20089649|ref|NP_615724.1| - 1.8e-19 69.0 0.1 2.5e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|20089649|ref|NP_615724.1| - 2.8e-05 23.5 0.0 4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF3832 PF12909.2 gi|20089649|ref|NP_615724.1| - 0.09 12.8 0.0 0.14 12.2 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3832) YcfA PF07927.7 gi|20089650|ref|NP_615725.1| - 5.3e-21 74.2 0.3 6.7e-21 73.9 0.2 1.1 1 0 0 1 1 1 1 YcfA-like protein NTP_transf_2 PF01909.18 gi|20089651|ref|NP_615726.1| - 5.8e-18 65.0 0.7 6.7e-18 64.8 0.5 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|20089651|ref|NP_615726.1| - 0.0022 18.0 0.0 0.0022 18.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF86 PF01934.12 gi|20089652|ref|NP_615727.1| - 2.3e-25 88.5 0.2 2.7e-25 88.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF759 PF05537.6 gi|20089652|ref|NP_615727.1| - 0.01 14.6 0.1 0.013 14.2 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) ABC2_membrane_3 PF12698.2 gi|20089653|ref|NP_615728.1| - 0.029 13.3 2.6 0.035 13.1 1.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Vps53_N PF04100.7 gi|20089653|ref|NP_615728.1| - 0.033 12.9 0.1 0.038 12.7 0.1 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal Linocin_M18 PF04454.7 gi|20089653|ref|NP_615728.1| - 0.096 11.5 0.3 0.11 11.3 0.2 1.1 1 0 0 1 1 1 0 Encapsulating protein for peroxidase DUF4083 PF13314.1 gi|20089653|ref|NP_615728.1| - 0.14 11.9 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF2570 PF10828.3 gi|20089653|ref|NP_615728.1| - 4.4 6.9 6.1 1.6 8.3 0.1 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2570) Methyltransf_11 PF08241.7 gi|20089654|ref|NP_615729.1| - 2.8e-24 85.3 0.0 6.8e-24 84.1 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089654|ref|NP_615729.1| - 1.3e-23 83.2 0.0 1.7e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089654|ref|NP_615729.1| - 1.7e-16 60.3 0.0 2.7e-16 59.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089654|ref|NP_615729.1| - 2.1e-15 56.9 0.0 3.7e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089654|ref|NP_615729.1| - 2.5e-15 57.0 0.0 4.6e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089654|ref|NP_615729.1| - 2.8e-15 56.5 0.0 5.1e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089654|ref|NP_615729.1| - 5.1e-14 51.9 0.0 9.1e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20089654|ref|NP_615729.1| - 7.3e-14 51.8 0.0 2.1e-13 50.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089654|ref|NP_615729.1| - 4e-08 32.8 0.0 1e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|20089654|ref|NP_615729.1| - 9.7e-06 25.1 0.0 1.6e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20089654|ref|NP_615729.1| - 0.00016 20.9 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|20089654|ref|NP_615729.1| - 0.0013 18.1 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|20089654|ref|NP_615729.1| - 0.0019 16.9 0.0 0.068 11.8 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|20089654|ref|NP_615729.1| - 0.0022 17.7 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.13 gi|20089654|ref|NP_615729.1| - 0.0027 16.9 0.0 0.52 9.5 0.0 2.7 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain PrmA PF06325.8 gi|20089654|ref|NP_615729.1| - 0.0042 16.2 0.0 0.006 15.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|20089654|ref|NP_615729.1| - 0.0046 16.4 0.0 0.0071 15.8 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RQC PF09382.5 gi|20089654|ref|NP_615729.1| - 0.012 15.3 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 RQC domain CMAS PF02353.15 gi|20089654|ref|NP_615729.1| - 0.019 14.0 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|20089654|ref|NP_615729.1| - 0.023 14.2 0.0 0.045 13.3 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DREV PF05219.7 gi|20089654|ref|NP_615729.1| - 0.07 11.9 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_15 PF09445.5 gi|20089654|ref|NP_615729.1| - 0.096 12.2 0.0 4.2 6.8 0.0 2.1 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|20089654|ref|NP_615729.1| - 0.14 11.6 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N_2 PF13602.1 gi|20089655|ref|NP_615730.1| - 2.8e-17 63.7 0.0 5.9e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|20089655|ref|NP_615730.1| - 1.7e-11 43.8 0.0 4.3e-10 39.3 0.0 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|20089655|ref|NP_615730.1| - 2.6e-10 39.9 0.0 6e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|20089655|ref|NP_615730.1| - 0.053 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Peripla_BP_6 PF13458.1 gi|20089655|ref|NP_615730.1| - 0.078 12.3 0.0 0.14 11.4 0.0 1.4 1 1 0 1 1 1 0 Periplasmic binding protein Semialdhyde_dh PF01118.19 gi|20089655|ref|NP_615730.1| - 0.079 13.2 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.18 gi|20089655|ref|NP_615730.1| - 0.089 12.6 0.1 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF1232 PF06803.7 gi|20089656|ref|NP_615731.1| - 1.4e-15 56.3 6.5 2.2e-15 55.8 4.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) DUF4400 PF14348.1 gi|20089656|ref|NP_615731.1| - 0.11 11.8 0.5 0.17 11.2 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) ADH_zinc_N_2 PF13602.1 gi|20089657|ref|NP_615732.1| - 1.3e-26 93.9 1.1 2.5e-26 93.0 0.1 1.9 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|20089657|ref|NP_615732.1| - 4.3e-18 65.1 0.0 7.2e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|20089657|ref|NP_615732.1| - 4.2e-11 42.5 0.2 3.1e-10 39.7 0.2 2.1 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|20089657|ref|NP_615732.1| - 0.058 13.4 0.1 0.11 12.4 0.1 1.6 1 1 0 1 1 1 0 NADH(P)-binding Methyltransf_18 PF12847.2 gi|20089657|ref|NP_615732.1| - 0.089 13.3 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Acetyltransf_4 PF13420.1 gi|20089659|ref|NP_615734.1| - 2.9e-22 79.2 0.0 3.4e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20089659|ref|NP_615734.1| - 1.6e-12 47.2 0.0 2.8e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|20089659|ref|NP_615734.1| - 3.2e-11 43.5 0.0 3.9e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20089659|ref|NP_615734.1| - 9.8e-11 41.6 0.1 2.1e-10 40.6 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089659|ref|NP_615734.1| - 1.9e-06 27.9 0.0 2.3e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089659|ref|NP_615734.1| - 1.1e-05 25.3 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20089659|ref|NP_615734.1| - 0.00067 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20089659|ref|NP_615734.1| - 0.0036 17.2 0.0 0.0051 16.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain TaqI_C PF12950.2 gi|20089660|ref|NP_615735.1| - 0.00076 19.2 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain HATPase_c PF02518.21 gi|20089661|ref|NP_615736.1| - 1.8e-13 50.1 0.1 7.6e-13 48.1 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|20089661|ref|NP_615736.1| - 2.5e-09 36.9 0.0 5.3e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|20089661|ref|NP_615736.1| - 1.3e-06 28.7 0.1 1.2e-05 25.5 0.0 2.6 3 1 0 3 3 3 1 PAS domain PAS_8 PF13188.1 gi|20089661|ref|NP_615736.1| - 1.1e-05 25.0 0.0 2.9e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|20089661|ref|NP_615736.1| - 5.8e-05 23.0 0.0 0.0047 16.9 0.0 2.3 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|20089661|ref|NP_615736.1| - 0.0013 18.2 0.4 0.0036 16.8 0.1 1.8 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.1 gi|20089661|ref|NP_615736.1| - 0.035 13.8 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain 7TM-7TMR_HD PF07698.6 gi|20089662|ref|NP_615737.1| - 0.002 17.5 0.4 0.0023 17.3 0.3 1.1 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase Bax1-I PF01027.15 gi|20089662|ref|NP_615737.1| - 0.0025 17.4 1.3 0.003 17.1 0.9 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 TrbC PF04956.8 gi|20089662|ref|NP_615737.1| - 0.0032 17.4 5.8 0.029 14.3 1.5 1.9 1 1 1 2 2 2 2 TrbC/VIRB2 family 7TM_GPCR_Srv PF10323.4 gi|20089662|ref|NP_615737.1| - 0.01 15.0 0.1 0.011 14.9 0.0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srv DUF1129 PF06570.6 gi|20089662|ref|NP_615737.1| - 0.036 13.3 0.2 0.037 13.3 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) YIF1 PF03878.10 gi|20089662|ref|NP_615737.1| - 0.067 12.3 0.1 0.078 12.1 0.1 1.1 1 0 0 1 1 1 0 YIF1 Herpes_pp38 PF04846.8 gi|20089662|ref|NP_615737.1| - 1 8.7 5.0 0.16 11.2 0.6 1.7 2 0 0 2 2 2 0 Herpesvirus pp38 phosphoprotein ETRAMP PF09716.5 gi|20089662|ref|NP_615737.1| - 1.1 9.2 3.9 0.59 10.1 0.2 1.9 1 1 1 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Flp_Fap PF04964.9 gi|20089662|ref|NP_615737.1| - 7.1 6.3 6.2 12 5.5 0.5 2.2 2 0 0 2 2 2 0 Flp/Fap pilin component URO-D PF01208.12 gi|20089663|ref|NP_615738.1| - 6.7e-80 268.5 0.0 7.5e-80 268.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) SUKH-3 PF14433.1 gi|20089663|ref|NP_615738.1| - 0.017 14.9 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 SUKH-3 immunity protein BIR PF00653.16 gi|20089663|ref|NP_615738.1| - 0.035 14.5 0.2 0.092 13.1 0.0 1.7 2 0 0 2 2 2 0 Inhibitor of Apoptosis domain EamA PF00892.15 gi|20089664|ref|NP_615739.1| - 7.8e-25 87.3 34.5 1.9e-13 50.5 7.9 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|20089664|ref|NP_615739.1| - 3.5e-08 33.6 7.5 3.5e-08 33.6 5.2 3.1 1 1 2 3 3 3 1 Multidrug resistance efflux transporter DUF3188 PF11384.3 gi|20089664|ref|NP_615739.1| - 5.3 6.6 7.3 1.8 8.1 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) Cupin_2 PF07883.6 gi|20089665|ref|NP_615740.1| - 1.6e-09 37.1 0.1 3.4e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|20089665|ref|NP_615740.1| - 4.3e-06 26.0 0.1 7.9e-06 25.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.9 gi|20089665|ref|NP_615740.1| - 4.3e-05 23.4 1.0 9.2e-05 22.4 0.1 1.9 2 0 0 2 2 2 1 ARD/ARD' family Cupin_1 PF00190.17 gi|20089665|ref|NP_615740.1| - 9.6e-05 21.8 0.1 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|20089665|ref|NP_615740.1| - 0.00019 21.1 1.0 0.00074 19.2 0.0 2.4 3 0 0 3 3 3 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|20089665|ref|NP_615740.1| - 0.0017 18.0 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|20089665|ref|NP_615740.1| - 0.012 15.1 0.0 0.058 12.9 0.0 1.9 2 0 0 2 2 2 0 AraC-binding-like domain HgmA PF04209.8 gi|20089665|ref|NP_615740.1| - 0.037 12.4 0.0 0.049 12.0 0.0 1.1 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase EutQ PF06249.7 gi|20089665|ref|NP_615740.1| - 0.044 13.3 0.0 0.079 12.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ PRA-PH PF01503.12 gi|20089665|ref|NP_615740.1| - 3.7 7.8 6.1 88 3.4 2.6 2.7 2 1 1 3 3 3 0 Phosphoribosyl-ATP pyrophosphohydrolase Acetyltransf_1 PF00583.19 gi|20089666|ref|NP_615741.1| - 4.2e-09 36.3 0.0 4.2e-08 33.1 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20089666|ref|NP_615741.1| - 1.3e-07 31.6 0.1 1.2e-06 28.5 0.0 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089666|ref|NP_615741.1| - 0.00032 20.7 0.0 0.0054 16.8 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20089666|ref|NP_615741.1| - 0.021 14.7 0.0 0.068 13.0 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PD40 PF07676.7 gi|20089667|ref|NP_615742.1| - 6.1e-10 38.5 13.0 0.32 10.7 0.2 7.4 7 3 0 7 7 7 4 WD40-like Beta Propeller Repeat Kelch_4 PF13418.1 gi|20089667|ref|NP_615742.1| - 2.1e-06 27.3 0.7 3.6 7.4 0.0 5.2 5 0 0 5 5 5 2 Galactose oxidase, central domain DUF295 PF03478.13 gi|20089667|ref|NP_615742.1| - 2.3e-05 23.6 3.2 3.2 7.1 0.1 6.1 7 0 0 7 7 7 2 Protein of unknown function (DUF295) PQQ_2 PF13360.1 gi|20089667|ref|NP_615742.1| - 4.7e-05 22.9 1.9 0.32 10.4 0.0 3.1 1 1 1 3 3 3 2 PQQ-like domain Kelch_3 PF13415.1 gi|20089667|ref|NP_615742.1| - 0.0018 18.3 5.6 2.7 8.2 0.0 5.1 5 1 1 6 6 6 1 Galactose oxidase, central domain Pectate_lyase22 PF14583.1 gi|20089667|ref|NP_615742.1| - 0.0032 15.9 0.6 0.11 10.9 0.0 2.7 2 1 1 3 3 3 1 Oligogalacturonate lyase DUF3155 PF11352.3 gi|20089667|ref|NP_615742.1| - 0.013 15.6 0.2 0.95 9.7 0.0 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3155) Aha1_N PF09229.6 gi|20089667|ref|NP_615742.1| - 0.032 14.0 2.7 2.6 7.8 0.0 3.2 2 1 2 4 4 4 0 Activator of Hsp90 ATPase, N-terminal Pilin PF00114.14 gi|20089667|ref|NP_615742.1| - 1.1 9.9 7.1 9.9 6.9 1.1 3.6 2 1 1 3 3 3 0 Pilin (bacterial filament) UPF0029 PF01205.14 gi|20089668|ref|NP_615743.1| - 6.2e-35 119.2 0.1 9e-35 118.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|20089668|ref|NP_615743.1| - 9.4e-11 41.1 0.4 1.8e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) Scm3 PF10384.4 gi|20089668|ref|NP_615743.1| - 0.011 15.2 0.1 0.027 13.9 0.1 1.7 1 0 0 1 1 1 0 Centromere protein Scm3 End3 PF12761.2 gi|20089668|ref|NP_615743.1| - 0.064 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 BPD_transp_1 PF00528.17 gi|20089671|ref|NP_615746.1| - 3.3e-18 65.8 7.6 4.5e-18 65.4 5.3 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|20089672|ref|NP_615747.1| - 8.2e-31 107.1 0.0 9.3e-31 106.9 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089672|ref|NP_615747.1| - 2.3e-06 27.8 0.1 0.00028 20.9 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20089672|ref|NP_615747.1| - 3.9e-05 23.7 0.0 6.6e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|20089672|ref|NP_615747.1| - 0.00018 21.0 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20089672|ref|NP_615747.1| - 0.00028 20.2 0.1 0.11 11.7 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|20089672|ref|NP_615747.1| - 0.00048 20.9 0.3 0.00062 20.5 0.2 1.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20089672|ref|NP_615747.1| - 0.00066 18.9 0.1 0.00077 18.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|20089672|ref|NP_615747.1| - 0.0015 18.9 0.0 0.0015 18.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20089672|ref|NP_615747.1| - 0.0018 18.4 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20089672|ref|NP_615747.1| - 0.002 17.6 0.0 0.002 17.6 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|20089672|ref|NP_615747.1| - 0.0021 17.9 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20089672|ref|NP_615747.1| - 0.0065 16.7 0.0 0.0079 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|20089672|ref|NP_615747.1| - 0.011 14.7 0.0 0.012 14.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.10 gi|20089672|ref|NP_615747.1| - 0.011 14.4 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|20089672|ref|NP_615747.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|20089672|ref|NP_615747.1| - 0.022 14.1 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20089672|ref|NP_615747.1| - 0.027 14.1 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IIGP PF05049.8 gi|20089672|ref|NP_615747.1| - 0.029 13.2 0.0 0.033 12.9 0.0 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) UPF0079 PF02367.12 gi|20089672|ref|NP_615747.1| - 0.029 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|20089672|ref|NP_615747.1| - 0.056 13.1 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ArgK PF03308.11 gi|20089672|ref|NP_615747.1| - 0.058 12.1 0.0 0.076 11.7 0.0 1.2 1 0 0 1 1 1 0 ArgK protein NB-ARC PF00931.17 gi|20089672|ref|NP_615747.1| - 0.06 12.1 0.0 0.097 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain G-alpha PF00503.15 gi|20089672|ref|NP_615747.1| - 0.063 11.9 0.0 0.075 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit FtsK_SpoIIIE PF01580.13 gi|20089672|ref|NP_615747.1| - 0.069 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|20089672|ref|NP_615747.1| - 0.097 13.1 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|20089672|ref|NP_615747.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|20089672|ref|NP_615747.1| - 0.14 12.3 0.1 0.67 10.1 0.0 2.1 1 1 1 2 2 2 0 RNA helicase ATP_bind_1 PF03029.12 gi|20089672|ref|NP_615747.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_21 PF13304.1 gi|20089673|ref|NP_615748.1| - 0.00023 21.2 0.0 0.00032 20.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|20089673|ref|NP_615748.1| - 0.015 13.8 0.0 0.015 13.8 0.0 1.0 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|20089673|ref|NP_615748.1| - 0.036 13.3 0.0 0.042 13.0 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20089673|ref|NP_615748.1| - 0.076 12.0 0.0 0.093 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain UbiA PF01040.13 gi|20089674|ref|NP_615749.1| - 5.1e-32 111.1 17.4 6.3e-32 110.8 12.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF373 PF04123.8 gi|20089674|ref|NP_615749.1| - 0.37 9.7 4.8 5.9 5.8 1.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF373) TcpE PF12648.2 gi|20089674|ref|NP_615749.1| - 0.59 10.3 5.9 0.13 12.4 0.6 2.4 2 0 0 2 2 2 0 TcpE family RseC_MucC PF04246.7 gi|20089674|ref|NP_615749.1| - 9.2 5.8 8.5 3.6 7.1 0.0 3.0 3 1 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC UbiA PF01040.13 gi|20089675|ref|NP_615750.1| - 5.5e-31 107.7 19.8 1e-30 106.8 13.7 1.4 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1516 PF07457.6 gi|20089675|ref|NP_615750.1| - 2.8 8.0 10.0 1.2 9.2 0.4 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF1516) Amidinotransf PF02274.12 gi|20089676|ref|NP_615751.1| - 4e-36 124.5 0.0 4.6e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase Methyltransf_33 PF10017.4 gi|20089677|ref|NP_615752.1| - 7.1e-12 45.3 0.0 1.2e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Methyltransf_25 PF13649.1 gi|20089677|ref|NP_615752.1| - 0.0089 16.3 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Radical_SAM PF04055.16 gi|20089678|ref|NP_615753.1| - 3e-15 56.7 0.0 4.8e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20089678|ref|NP_615753.1| - 8.8e-10 38.8 0.0 8.3e-09 35.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20089678|ref|NP_615753.1| - 1.3e-09 38.1 0.0 3.3e-09 36.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|20089678|ref|NP_615753.1| - 0.00022 21.4 1.0 0.00022 21.4 0.7 2.4 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|20089679|ref|NP_615754.1| - 6.1e-09 36.2 0.0 8.7e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20089679|ref|NP_615754.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1848 PF08902.6 gi|20089679|ref|NP_615754.1| - 0.17 11.4 4.8 0.72 9.3 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) CMD PF02627.15 gi|20089680|ref|NP_615755.1| - 0.00044 20.0 0.0 0.00056 19.7 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Polysacc_deac_1 PF01522.16 gi|20089681|ref|NP_615756.1| - 2.2e-23 82.2 0.0 3.1e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.15 gi|20089682|ref|NP_615757.1| - 2.8e-37 127.7 0.1 1.1e-36 125.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20089682|ref|NP_615757.1| - 2.4e-22 79.7 0.0 3.8e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|20089682|ref|NP_615757.1| - 1.7e-19 70.2 0.0 2.2e-18 66.6 0.0 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|20089682|ref|NP_615757.1| - 2.7e-16 59.9 0.0 3e-15 56.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20089682|ref|NP_615757.1| - 2.6e-13 49.9 0.0 6.1e-13 48.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|20089682|ref|NP_615757.1| - 1.4e-07 31.7 0.0 2.4e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|20089682|ref|NP_615757.1| - 3.5e-05 23.3 0.0 0.00011 21.8 0.0 1.9 2 1 0 2 2 2 1 Starch synthase catalytic domain PIGA PF08288.7 gi|20089682|ref|NP_615757.1| - 0.00034 20.9 0.0 0.00073 19.8 0.0 1.6 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_transf_28 PF03033.15 gi|20089682|ref|NP_615757.1| - 0.00064 19.5 0.0 0.0039 16.9 0.0 2.2 2 1 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain UPF0104 PF03706.8 gi|20089683|ref|NP_615758.1| - 4.7e-36 124.5 32.1 5.8e-36 124.2 22.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Cupredoxin_1 PF13473.1 gi|20089684|ref|NP_615759.1| - 4.5e-27 93.9 0.8 5.8e-14 51.8 0.1 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain Copper-bind PF00127.15 gi|20089684|ref|NP_615759.1| - 4.4e-07 30.0 5.4 0.0049 17.0 0.2 4.2 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Y_Y_Y PF07495.8 gi|20089684|ref|NP_615759.1| - 0.00012 21.7 0.5 0.49 10.1 0.0 2.8 2 0 0 2 2 2 2 Y_Y_Y domain PKD PF00801.15 gi|20089684|ref|NP_615759.1| - 0.0015 18.2 4.1 0.18 11.5 0.0 2.9 3 0 0 3 3 3 2 PKD domain FAM70 PF14967.1 gi|20089684|ref|NP_615759.1| - 0.13 11.4 0.1 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 FAM70 protein PPC PF04151.10 gi|20089684|ref|NP_615759.1| - 3.2 8.7 5.9 3.2 8.7 0.1 3.0 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain Ets PF00178.17 gi|20089685|ref|NP_615760.1| - 0.037 14.1 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Ets-domain DUF1724 PF08350.5 gi|20089686|ref|NP_615761.1| - 2.7e-25 87.6 0.2 7.2e-25 86.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) DUF1724 PF08350.5 gi|20089687|ref|NP_615762.1| - 4.6e-26 90.1 0.0 1.1e-25 88.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HemN_C PF06969.11 gi|20089687|ref|NP_615762.1| - 0.037 14.0 0.0 0.074 13.1 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_5 PF01022.15 gi|20089687|ref|NP_615762.1| - 0.086 12.5 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20089687|ref|NP_615762.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Methyltransf_11 PF08241.7 gi|20089688|ref|NP_615763.1| - 1.1e-14 54.6 0.0 1.8e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089688|ref|NP_615763.1| - 5.5e-12 45.9 0.0 1.7e-11 44.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089688|ref|NP_615763.1| - 3.1e-11 43.8 0.0 4.8e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089688|ref|NP_615763.1| - 1.4e-10 40.9 0.0 2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20089688|ref|NP_615763.1| - 4.9e-08 32.3 0.0 8.4e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|20089688|ref|NP_615763.1| - 5.9e-07 29.3 0.0 9.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089688|ref|NP_615763.1| - 8.6e-07 28.2 0.0 1.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|20089688|ref|NP_615763.1| - 9.5e-06 26.0 0.0 1.4e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|20089688|ref|NP_615763.1| - 0.00021 20.9 0.0 0.0059 16.2 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|20089688|ref|NP_615763.1| - 0.0096 14.3 0.0 0.011 14.1 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|20089688|ref|NP_615763.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|20089688|ref|NP_615763.1| - 0.096 13.5 0.0 0.18 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|20089688|ref|NP_615763.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Cation_efflux PF01545.16 gi|20089689|ref|NP_615764.1| - 5.2e-59 199.6 5.2 7.3e-59 199.1 3.6 1.1 1 0 0 1 1 1 1 Cation efflux family Zip PF02535.17 gi|20089689|ref|NP_615764.1| - 0.64 8.9 11.2 0.093 11.7 4.9 1.6 2 0 0 2 2 2 0 ZIP Zinc transporter DUF2104 PF09877.4 gi|20089689|ref|NP_615764.1| - 2.5 8.1 6.3 0.57 10.1 0.3 2.5 2 2 0 2 2 2 0 Predicted membrane protein (DUF2104) APC_15aa PF05972.6 gi|20089690|ref|NP_615765.1| - 0.043 13.8 2.2 0.11 12.5 1.5 1.6 1 0 0 1 1 1 0 APC 15 residue motif NifU_N PF01592.11 gi|20089691|ref|NP_615766.1| - 6e-44 149.0 0.0 9.1e-44 148.4 0.0 1.3 1 0 0 1 1 1 1 NifU-like N terminal domain DUF59 PF01883.14 gi|20089691|ref|NP_615766.1| - 3.1e-11 43.1 2.1 5.1e-11 42.3 0.7 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF59 Aminotran_5 PF00266.14 gi|20089692|ref|NP_615767.1| - 1.2e-71 241.4 0.0 1.9e-71 240.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|20089692|ref|NP_615767.1| - 3.1e-08 33.0 0.0 6e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|20089692|ref|NP_615767.1| - 1.2e-05 24.5 0.0 1.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|20089692|ref|NP_615767.1| - 0.00023 19.6 0.1 0.0004 18.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme B12-binding PF02310.14 gi|20089692|ref|NP_615767.1| - 0.036 13.9 0.0 0.19 11.6 0.0 2.2 1 1 0 1 1 1 0 B12 binding domain Aminotran_1_2 PF00155.16 gi|20089692|ref|NP_615767.1| - 0.042 12.7 0.0 0.052 12.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II SLA_LP_auto_ag PF05889.8 gi|20089692|ref|NP_615767.1| - 0.08 11.3 0.0 0.13 10.7 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DrsE_2 PF13686.1 gi|20089693|ref|NP_615768.1| - 2.6e-36 124.6 2.6 6.6e-36 123.3 1.8 1.5 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|20089693|ref|NP_615768.1| - 4.1e-05 23.6 0.0 8.8e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.5 gi|20089693|ref|NP_615768.1| - 0.02 14.2 0.2 5.2 6.5 0.0 2.7 2 1 0 2 2 2 0 Anti-repressor SinI TusA PF01206.12 gi|20089694|ref|NP_615769.1| - 1.9e-21 75.4 0.1 2e-21 75.3 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|20089694|ref|NP_615769.1| - 0.14 11.7 0.0 2.4 7.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) HIT PF01230.18 gi|20089695|ref|NP_615770.1| - 3.4e-31 107.6 0.0 4.6e-31 107.2 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|20089695|ref|NP_615770.1| - 5.3e-20 71.7 0.0 6.6e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|20089695|ref|NP_615770.1| - 5.9e-05 22.6 0.0 8.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 EI24 PF07264.6 gi|20089696|ref|NP_615771.1| - 0.0088 15.4 12.5 0.0099 15.3 0.8 2.1 2 0 0 2 2 2 2 Etoposide-induced protein 2.4 (EI24) DUF3054 PF11255.3 gi|20089696|ref|NP_615771.1| - 0.055 13.3 2.3 0.078 12.8 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3054) CARDB PF07705.6 gi|20089697|ref|NP_615772.1| - 4.1e-144 469.7 25.3 3.5e-32 110.4 1.2 5.9 5 0 0 5 5 5 5 CARDB DUF11 PF01345.13 gi|20089697|ref|NP_615772.1| - 1.9e-19 69.4 12.2 0.00028 20.8 0.1 5.7 5 0 0 5 5 5 5 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|20089697|ref|NP_615772.1| - 1.4e-08 34.6 0.7 0.12 12.4 0.0 4.9 5 0 0 5 5 5 3 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|20089697|ref|NP_615772.1| - 4.8e-06 26.5 2.8 4 7.5 0.0 5.3 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF3421 PF11901.3 gi|20089697|ref|NP_615772.1| - 0.0044 16.7 0.1 21 4.8 0.0 3.9 4 0 0 4 4 4 1 Protein of unknown function (DUF3421) DUF824 PF05688.6 gi|20089697|ref|NP_615772.1| - 0.016 14.8 1.5 7.8 6.2 0.0 4.1 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) EF-hand_7 PF13499.1 gi|20089698|ref|NP_615773.1| - 0.019 15.0 0.8 0.18 11.9 0.0 2.4 2 0 0 2 2 2 0 EF-hand domain pair tRNA-synt_1b PF00579.20 gi|20089699|ref|NP_615774.1| - 7.4e-57 192.6 0.0 8.9e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|20089699|ref|NP_615774.1| - 0.075 11.6 0.0 3.3 6.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) Msg2_C PF12373.3 gi|20089699|ref|NP_615774.1| - 0.22 10.7 2.0 0.42 9.8 1.4 1.5 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal Thg1C PF14413.1 gi|20089700|ref|NP_615775.1| - 6.8e-16 58.0 0.4 7.6e-16 57.9 0.3 1.0 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|20089701|ref|NP_615776.1| - 6.4e-28 97.0 0.0 7.7e-28 96.7 0.0 1.1 1 0 0 1 1 1 1 tRNAHis guanylyltransferase PRC PF05239.11 gi|20089702|ref|NP_615777.1| - 1e-14 54.1 1.1 1.3e-14 53.7 0.8 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF650 PF04894.7 gi|20089702|ref|NP_615777.1| - 0.11 11.9 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 Archaeal protein of unknown function (DUF650) Ldh_1_N PF00056.18 gi|20089703|ref|NP_615778.1| - 5.8e-37 126.6 1.5 8.8e-37 126.0 1.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|20089703|ref|NP_615778.1| - 1.8e-29 102.6 0.0 3.1e-29 101.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|20089703|ref|NP_615778.1| - 2e-05 24.0 1.9 7e-05 22.2 0.1 2.2 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.9 gi|20089703|ref|NP_615778.1| - 0.00093 18.6 1.7 0.0079 15.5 1.2 2.1 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|20089703|ref|NP_615778.1| - 0.025 14.4 0.1 0.075 12.8 0.0 1.8 1 0 0 1 1 1 0 ThiF family Semialdhyde_dh PF01118.19 gi|20089703|ref|NP_615778.1| - 0.086 13.1 0.1 0.23 11.7 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|20089703|ref|NP_615778.1| - 0.089 12.8 0.8 0.31 11.1 0.5 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|20089703|ref|NP_615778.1| - 0.12 12.8 2.5 0.23 11.8 0.2 2.6 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent RNase_H_2 PF13482.1 gi|20089704|ref|NP_615779.1| - 1.8e-36 125.4 0.0 2.4e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|20089704|ref|NP_615779.1| - 0.0077 15.7 0.0 0.35 10.3 0.0 2.2 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_5 PF14520.1 gi|20089704|ref|NP_615779.1| - 0.011 15.8 0.0 0.033 14.3 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain RNase_T PF00929.19 gi|20089704|ref|NP_615779.1| - 0.015 15.5 0.0 0.082 13.1 0.0 2.1 1 1 1 2 2 2 0 Exonuclease DNA_pol_B_exo1 PF03104.14 gi|20089704|ref|NP_615779.1| - 0.072 11.9 0.1 0.41 9.4 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase family B, exonuclease domain GPI PF06560.6 gi|20089705|ref|NP_615780.1| - 1.1e-71 239.6 0.1 1.4e-71 239.2 0.1 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|20089705|ref|NP_615780.1| - 0.001 18.5 0.1 0.003 17.0 0.1 2.0 1 1 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|20089705|ref|NP_615780.1| - 0.055 12.8 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 Cupin DUF128 PF01995.11 gi|20089706|ref|NP_615781.1| - 1.6e-94 315.2 1.0 1.8e-94 315.1 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 DHHA1 PF02272.14 gi|20089707|ref|NP_615782.1| - 9.8e-15 54.0 0.7 2.1e-14 52.9 0.5 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|20089707|ref|NP_615782.1| - 1.9e-14 53.5 0.1 3.3e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 DHH family SelA PF03841.8 gi|20089707|ref|NP_615782.1| - 0.0054 15.5 0.0 0.016 14.0 0.0 1.7 1 1 1 2 2 2 1 L-seryl-tRNA selenium transferase DUF3596 PF12167.3 gi|20089707|ref|NP_615782.1| - 0.067 12.7 1.2 5.9 6.5 0.3 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3596) cobW PF02492.14 gi|20089707|ref|NP_615782.1| - 0.21 10.9 1.3 15 4.9 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Radical_SAM PF04055.16 gi|20089710|ref|NP_615785.1| - 4.2e-16 59.5 0.0 1.2e-15 58.1 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|20089710|ref|NP_615785.1| - 1.4e-10 41.0 0.2 7.6e-10 38.6 0.2 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|20089710|ref|NP_615785.1| - 0.0027 17.8 0.0 0.01 15.9 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20089710|ref|NP_615785.1| - 0.013 15.6 0.0 0.035 14.2 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain zinc_ribbon_5 PF13719.1 gi|20089710|ref|NP_615785.1| - 0.014 14.9 1.3 0.031 13.8 0.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20089710|ref|NP_615785.1| - 0.021 14.5 1.3 0.047 13.3 0.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain S-layer PF07752.6 gi|20089713|ref|NP_615788.1| - 1.6e-176 584.6 40.7 3.3e-89 298.5 10.2 2.1 2 0 0 2 2 2 2 S-layer protein DUF3224 PF11528.3 gi|20089713|ref|NP_615788.1| - 0.00041 19.8 0.1 0.85 9.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3224) Mtf2_C PF14061.1 gi|20089713|ref|NP_615788.1| - 0.003 17.4 0.0 5.2 7.0 0.0 2.9 2 0 0 2 2 2 2 Polycomb-like MTF2 factor 2 tRNA-synt_1c_C PF03950.13 gi|20089713|ref|NP_615788.1| - 0.02 14.5 2.9 3.1 7.4 0.1 2.8 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), anti-codon binding domain PrcB_C PF14343.1 gi|20089713|ref|NP_615788.1| - 2.4 7.9 10.5 60 3.4 0.0 4.9 5 0 0 5 5 5 0 PrcB C-terminal DUF2874 PF11396.3 gi|20089713|ref|NP_615788.1| - 4.3 7.3 16.2 1.4 8.9 0.3 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2874) DUF4367 PF14285.1 gi|20089714|ref|NP_615789.1| - 0.07 12.4 6.1 0.2 10.9 4.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4367) DUF4096 PF13340.1 gi|20089715|ref|NP_615790.1| - 4.5e-31 106.5 1.1 8.7e-31 105.6 0.8 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.16 gi|20089715|ref|NP_615790.1| - 5.9e-23 81.5 1.1 3.9e-22 78.8 0.7 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|20089715|ref|NP_615790.1| - 8.7e-17 61.0 0.1 2.2e-16 59.8 0.1 1.7 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|20089715|ref|NP_615790.1| - 0.026 14.2 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain GXGXG PF01493.14 gi|20089716|ref|NP_615791.1| - 6.4e-33 113.4 17.8 1.5e-32 112.2 12.4 1.5 1 1 0 1 1 1 1 GXGXG motif Dicty_CAD PF05720.7 gi|20089716|ref|NP_615791.1| - 0.38 10.4 2.6 8.3 6.1 0.0 3.2 3 0 0 3 3 3 0 Cell-cell adhesion domain DIM PF08194.7 gi|20089716|ref|NP_615791.1| - 1.5 8.8 19.6 1.2 9.1 0.2 6.0 5 1 1 6 6 6 0 DIM protein Amidohydro_3 PF07969.6 gi|20089717|ref|NP_615792.1| - 8.6e-68 229.3 0.0 1e-67 229.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20089717|ref|NP_615792.1| - 7.8e-08 32.0 0.5 4.6e-06 26.3 0.0 3.3 4 0 0 4 4 4 1 Amidohydrolase Urease_alpha PF00449.15 gi|20089717|ref|NP_615792.1| - 0.22 11.6 1.3 0.55 10.3 0.2 2.1 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Molybdopterin PF00384.17 gi|20089718|ref|NP_615793.1| - 1.1e-18 67.1 0.0 4.9e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|20089718|ref|NP_615793.1| - 0.024 14.4 0.2 0.075 12.8 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Viral_cys_rich PF08008.7 gi|20089718|ref|NP_615793.1| - 0.13 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Viral cysteine rich Molydop_binding PF01568.16 gi|20089719|ref|NP_615794.1| - 4e-16 58.7 0.0 5.1e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DDE_3 PF13358.1 gi|20089720|ref|NP_615795.1| - 2.3e-19 69.5 0.0 3.1e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease RHSP PF07999.6 gi|20089720|ref|NP_615795.1| - 0.019 13.6 0.2 0.023 13.3 0.1 1.1 1 0 0 1 1 1 0 Retrotransposon hot spot protein Thioredoxin_8 PF13905.1 gi|20089720|ref|NP_615795.1| - 0.041 14.0 0.8 2.1 8.5 0.1 2.5 2 1 0 2 2 2 0 Thioredoxin-like rve_3 PF13683.1 gi|20089720|ref|NP_615795.1| - 0.054 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Integrase core domain DIX PF00778.12 gi|20089720|ref|NP_615795.1| - 0.89 9.3 5.1 1.4 8.6 0.1 2.8 2 2 0 2 2 2 0 DIX domain DUF1296 PF06972.6 gi|20089720|ref|NP_615795.1| - 4.9 7.2 9.2 0.54 10.2 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1296) DUF1670 PF07900.6 gi|20089721|ref|NP_615796.1| - 6.9e-98 326.2 4.8 8.1e-98 326.0 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20089721|ref|NP_615796.1| - 1.7e-06 27.4 0.1 0.66 9.7 0.0 4.0 3 1 1 4 4 4 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20089721|ref|NP_615796.1| - 8.5e-05 21.9 0.6 2.5 7.6 0.0 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20089721|ref|NP_615796.1| - 0.00027 20.6 0.2 0.39 10.5 0.0 2.9 1 1 2 3 3 3 2 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|20089721|ref|NP_615796.1| - 0.00036 20.7 0.1 1.8 8.8 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20089721|ref|NP_615796.1| - 0.00067 18.9 0.0 0.56 9.6 0.0 3.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|20089721|ref|NP_615796.1| - 0.0012 18.3 0.2 0.0089 15.5 0.2 2.3 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_5 PF01022.15 gi|20089721|ref|NP_615796.1| - 0.0012 18.4 0.2 0.14 11.8 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|20089721|ref|NP_615796.1| - 0.0055 16.8 0.1 13 5.9 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|20089721|ref|NP_615796.1| - 0.015 15.2 1.2 5 7.1 0.2 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|20089721|ref|NP_615796.1| - 0.022 14.3 0.2 11 5.7 0.0 3.0 3 0 0 3 3 3 0 HTH domain HTH_38 PF13936.1 gi|20089721|ref|NP_615796.1| - 0.03 13.8 1.2 2.7 7.6 0.1 3.2 3 1 1 4 4 4 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|20089721|ref|NP_615796.1| - 0.041 13.6 0.2 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_10 PF04967.7 gi|20089721|ref|NP_615796.1| - 0.069 12.7 0.1 0.88 9.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain KorB PF08535.5 gi|20089721|ref|NP_615796.1| - 0.07 13.2 0.0 0.28 11.3 0.0 2.1 1 0 0 1 1 1 0 KorB domain DUF1670 PF07900.6 gi|20089722|ref|NP_615797.1| - 6.7e-89 296.8 0.3 8.3e-89 296.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_24 PF13412.1 gi|20089722|ref|NP_615797.1| - 0.0003 20.1 0.2 0.0021 17.4 0.2 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20089722|ref|NP_615797.1| - 0.0012 18.8 0.0 0.037 14.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20089722|ref|NP_615797.1| - 0.0019 17.8 0.0 9.3 6.0 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_29 PF13551.1 gi|20089722|ref|NP_615797.1| - 0.0019 18.2 0.1 0.35 11.0 0.0 3.0 1 1 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|20089722|ref|NP_615797.1| - 0.0022 17.5 0.8 0.0089 15.6 0.1 2.3 2 1 1 3 3 3 1 HTH domain HTH_17 PF12728.2 gi|20089722|ref|NP_615797.1| - 0.013 15.7 0.1 0.28 11.4 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20089722|ref|NP_615797.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|20089722|ref|NP_615797.1| - 0.017 14.7 0.1 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|20089722|ref|NP_615797.1| - 0.036 13.5 1.5 8.4 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|20089722|ref|NP_615797.1| - 0.036 14.0 0.4 1.4 9.0 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20089722|ref|NP_615797.1| - 0.055 13.0 1.3 4.1 7.0 0.0 3.5 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) MarR PF01047.17 gi|20089722|ref|NP_615797.1| - 0.062 13.0 0.1 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|20089722|ref|NP_615797.1| - 0.068 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TENA_THI-4 PF03070.11 gi|20089722|ref|NP_615797.1| - 0.11 12.2 0.9 3.4 7.3 0.1 2.8 2 1 0 3 3 3 0 TENA/THI-4/PQQC family HTH_38 PF13936.1 gi|20089722|ref|NP_615797.1| - 0.16 11.5 2.3 0.18 11.3 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|20089723|ref|NP_615798.1| - 1.1e-16 61.0 0.1 4.2e-16 59.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20089723|ref|NP_615798.1| - 1e-08 34.5 0.0 9.8e-08 31.4 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_32 PF13565.1 gi|20089723|ref|NP_615798.1| - 1.1e-08 35.7 0.2 7.3e-08 33.1 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20089723|ref|NP_615798.1| - 8.3e-07 28.8 0.0 2.5e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain PAX PF00292.13 gi|20089723|ref|NP_615798.1| - 2e-05 24.2 0.1 0.00011 21.9 0.0 1.9 1 1 1 2 2 2 1 'Paired box' domain Sigma70_r4_2 PF08281.7 gi|20089723|ref|NP_615798.1| - 2.3e-05 23.7 0.0 5.7e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|20089723|ref|NP_615798.1| - 0.00099 18.4 0.3 0.032 13.6 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20089723|ref|NP_615798.1| - 0.0023 17.6 0.1 0.014 15.1 0.0 2.2 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|20089723|ref|NP_615798.1| - 0.0048 16.0 0.0 0.014 14.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.4 gi|20089723|ref|NP_615798.1| - 0.0056 16.4 0.0 0.0099 15.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) GerE PF00196.14 gi|20089723|ref|NP_615798.1| - 0.0076 15.5 0.0 0.0076 15.5 0.0 2.1 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_30 PF13556.1 gi|20089723|ref|NP_615798.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|20089723|ref|NP_615798.1| - 0.019 14.4 0.0 0.053 13.0 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Phage_NinH PF06322.6 gi|20089723|ref|NP_615798.1| - 0.088 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4 PF04545.11 gi|20089723|ref|NP_615798.1| - 0.11 11.7 1.2 1 8.7 0.1 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 SBP_bac_5 PF00496.17 gi|20089724|ref|NP_615799.1| - 2.4e-83 280.0 0.0 3.1e-83 279.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_18 PF12847.2 gi|20089725|ref|NP_615800.1| - 2.4e-12 47.4 0.0 4.4e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089725|ref|NP_615800.1| - 1.7e-11 43.9 0.0 3.6e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089725|ref|NP_615800.1| - 1.7e-10 41.2 0.0 3.2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089725|ref|NP_615800.1| - 1.7e-09 37.6 0.0 3.5e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089725|ref|NP_615800.1| - 1.2e-08 35.2 0.0 2.2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20089725|ref|NP_615800.1| - 6.6e-08 31.9 0.0 1.2e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|20089725|ref|NP_615800.1| - 1.9e-07 31.4 0.0 4.6e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20089725|ref|NP_615800.1| - 2.9e-06 26.5 0.0 4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|20089725|ref|NP_615800.1| - 4.8e-06 26.0 0.0 7e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|20089725|ref|NP_615800.1| - 6.5e-06 25.6 0.0 8.6e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|20089725|ref|NP_615800.1| - 7.1e-06 26.0 0.0 1.1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|20089725|ref|NP_615800.1| - 7e-05 22.0 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|20089725|ref|NP_615800.1| - 0.0003 19.9 0.0 0.00054 19.1 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|20089725|ref|NP_615800.1| - 0.00036 19.7 0.0 0.00049 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|20089725|ref|NP_615800.1| - 0.00075 19.5 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase DREV PF05219.7 gi|20089725|ref|NP_615800.1| - 0.0032 16.3 0.0 0.0058 15.5 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase FmrO PF07091.6 gi|20089725|ref|NP_615800.1| - 0.0055 15.7 0.0 0.0088 15.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PilX PF13681.1 gi|20089725|ref|NP_615800.1| - 0.01 16.2 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Type IV pilus assembly protein PilX C-term MetW PF07021.7 gi|20089725|ref|NP_615800.1| - 0.018 14.3 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW BPD_transp_1 PF00528.17 gi|20089726|ref|NP_615801.1| - 3.2e-39 134.3 10.3 3.2e-39 134.3 7.1 1.6 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|20089727|ref|NP_615802.1| - 2.3e-24 85.9 12.1 2.3e-24 85.9 8.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20089727|ref|NP_615802.1| - 0.001 18.4 0.2 0.001 18.4 0.2 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|20089728|ref|NP_615803.1| - 3.5e-55 186.0 0.0 4e-28 98.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|20089728|ref|NP_615803.1| - 2.4e-20 72.6 0.0 2e-17 63.2 0.0 2.8 3 0 0 3 3 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20089728|ref|NP_615803.1| - 5.8e-18 65.8 0.5 7.4e-06 26.1 0.0 4.0 3 1 0 3 3 3 3 AAA domain SMC_N PF02463.14 gi|20089728|ref|NP_615803.1| - 5.2e-15 55.2 0.3 2.8e-07 29.9 0.0 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20089728|ref|NP_615803.1| - 9.4e-13 48.4 1.2 1.4e-05 25.2 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|20089728|ref|NP_615803.1| - 3e-09 36.5 0.1 0.0018 17.7 0.0 3.6 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|20089728|ref|NP_615803.1| - 1.1e-08 34.5 0.1 0.00077 18.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA PF00004.24 gi|20089728|ref|NP_615803.1| - 2.1e-06 27.9 1.0 0.016 15.3 0.0 3.9 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|20089728|ref|NP_615803.1| - 3.8e-06 26.1 0.1 0.012 14.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 NACHT PF05729.7 gi|20089728|ref|NP_615803.1| - 6.5e-06 25.9 0.7 0.085 12.5 0.0 3.2 4 0 0 4 4 3 2 NACHT domain AAA_18 PF13238.1 gi|20089728|ref|NP_615803.1| - 7e-06 26.3 0.1 0.063 13.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|20089728|ref|NP_615803.1| - 7.5e-06 25.7 0.2 0.033 13.9 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|20089728|ref|NP_615803.1| - 1.1e-05 25.4 1.9 0.032 14.2 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|20089728|ref|NP_615803.1| - 1.1e-05 26.1 1.7 0.032 15.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|20089728|ref|NP_615803.1| - 2.1e-05 24.0 0.7 0.62 9.4 0.0 3.9 4 0 0 4 4 4 1 IstB-like ATP binding protein KaiC PF06745.8 gi|20089728|ref|NP_615803.1| - 4.5e-05 22.6 1.2 1.8 7.6 0.0 3.2 3 0 0 3 3 3 1 KaiC AAA_19 PF13245.1 gi|20089728|ref|NP_615803.1| - 7.9e-05 22.3 0.1 0.2 11.4 0.0 2.7 2 0 0 2 2 2 2 Part of AAA domain AAA_23 PF13476.1 gi|20089728|ref|NP_615803.1| - 9.4e-05 22.8 0.1 0.3 11.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|20089728|ref|NP_615803.1| - 0.00013 21.6 0.8 0.22 11.2 0.0 3.5 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|20089728|ref|NP_615803.1| - 0.00017 21.1 0.6 0.38 10.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|20089728|ref|NP_615803.1| - 0.00018 20.4 1.2 0.35 9.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_33 PF13671.1 gi|20089728|ref|NP_615803.1| - 0.00021 21.1 0.1 0.42 10.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|20089728|ref|NP_615803.1| - 0.00023 20.4 0.6 1.1 8.4 0.1 3.2 3 1 0 3 3 3 2 Magnesium chelatase, subunit ChlI DUF87 PF01935.12 gi|20089728|ref|NP_615803.1| - 0.00026 20.8 0.5 0.033 13.9 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|20089728|ref|NP_615803.1| - 0.0005 19.6 5.9 0.37 10.1 0.2 4.0 3 1 1 4 4 4 1 AAA-like domain T2SE PF00437.15 gi|20089728|ref|NP_615803.1| - 0.0006 18.8 0.0 0.15 10.9 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|20089728|ref|NP_615803.1| - 0.00081 18.1 0.0 0.02 13.5 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain APS_kinase PF01583.15 gi|20089728|ref|NP_615803.1| - 0.0009 18.9 0.4 0.15 11.6 0.0 2.4 2 0 0 2 2 2 1 Adenylylsulphate kinase DEAD PF00270.24 gi|20089728|ref|NP_615803.1| - 0.0012 18.3 0.0 1.8 8.0 0.0 3.3 3 1 0 3 3 3 1 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.13 gi|20089728|ref|NP_615803.1| - 0.002 17.6 0.0 0.53 9.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_31 PF13614.1 gi|20089728|ref|NP_615803.1| - 0.0024 17.8 0.2 0.064 13.1 0.0 2.7 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|20089728|ref|NP_615803.1| - 0.0025 16.9 0.1 0.17 10.9 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin PhoH PF02562.11 gi|20089728|ref|NP_615803.1| - 0.0042 16.3 0.0 3 7.0 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein NTPase_1 PF03266.10 gi|20089728|ref|NP_615803.1| - 0.0042 16.8 0.8 3.6 7.2 0.1 3.1 3 0 0 3 3 3 0 NTPase SbcCD_C PF13558.1 gi|20089728|ref|NP_615803.1| - 0.0045 16.8 1.6 3.9 7.4 0.1 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|20089728|ref|NP_615803.1| - 0.0047 16.5 0.4 0.51 9.8 0.0 2.2 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|20089728|ref|NP_615803.1| - 0.006 16.7 0.1 0.8 9.9 0.0 2.8 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.1 gi|20089728|ref|NP_615803.1| - 0.0095 15.8 0.1 10 6.0 0.0 3.8 4 0 0 4 4 4 0 AAA domain TIP49 PF06068.8 gi|20089728|ref|NP_615803.1| - 0.017 13.8 0.1 0.42 9.2 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus AAA_30 PF13604.1 gi|20089728|ref|NP_615803.1| - 0.022 14.3 0.0 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|20089728|ref|NP_615803.1| - 0.023 14.1 1.3 1 8.7 0.2 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.10 gi|20089728|ref|NP_615803.1| - 0.027 14.3 0.0 8.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_15 PF13175.1 gi|20089728|ref|NP_615803.1| - 0.029 13.4 0.5 6.6 5.6 0.0 3.0 3 0 0 3 3 3 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|20089728|ref|NP_615803.1| - 0.029 13.8 0.2 4.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain SRP54 PF00448.17 gi|20089728|ref|NP_615803.1| - 0.055 12.9 0.8 1.2 8.5 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Pox_A32 PF04665.7 gi|20089728|ref|NP_615803.1| - 0.066 12.5 0.3 9.9 5.3 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein Rad17 PF03215.10 gi|20089728|ref|NP_615803.1| - 0.088 11.4 0.0 1 7.9 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|20089728|ref|NP_615803.1| - 0.089 11.3 4.5 14 4.1 0.0 4.3 4 1 0 4 4 4 0 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|20089728|ref|NP_615803.1| - 0.18 11.3 0.1 14 5.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|20089728|ref|NP_615803.1| - 0.18 11.2 0.7 8.6 5.8 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|20089728|ref|NP_615803.1| - 0.19 11.7 0.6 8.9 6.3 0.0 2.7 3 0 0 3 3 2 0 Sigma-54 interaction domain DUF927 PF06048.6 gi|20089728|ref|NP_615803.1| - 0.19 10.9 0.4 30 3.7 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF927) MMR_HSR1 PF01926.18 gi|20089728|ref|NP_615803.1| - 0.2 11.6 1.7 2.5 8.0 0.1 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|20089729|ref|NP_615804.1| - 9.7e-33 113.3 0.0 1.6e-32 112.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089729|ref|NP_615804.1| - 3.8e-15 56.6 0.1 2.8e-13 50.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|20089729|ref|NP_615804.1| - 6.3e-06 26.6 0.0 8.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20089729|ref|NP_615804.1| - 2.5e-05 23.7 0.1 4.6e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|20089729|ref|NP_615804.1| - 2.7e-05 23.3 0.0 0.015 14.3 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|20089729|ref|NP_615804.1| - 0.0055 16.1 0.0 2.6 7.3 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|20089729|ref|NP_615804.1| - 0.0075 15.5 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|20089729|ref|NP_615804.1| - 0.013 15.4 0.0 0.039 13.9 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|20089729|ref|NP_615804.1| - 0.033 13.3 0.3 0.06 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|20089729|ref|NP_615804.1| - 0.045 13.1 0.2 3.8 6.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|20089729|ref|NP_615804.1| - 0.055 13.6 0.0 0.31 11.2 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|20089729|ref|NP_615804.1| - 0.064 12.6 0.0 0.78 9.1 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|20089729|ref|NP_615804.1| - 0.066 13.3 0.1 0.2 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|20089729|ref|NP_615804.1| - 0.073 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_19 PF13245.1 gi|20089729|ref|NP_615804.1| - 0.15 11.8 0.1 0.46 10.2 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain ABC2_membrane PF01061.19 gi|20089730|ref|NP_615805.1| - 7e-36 123.3 25.8 7e-36 123.3 17.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|20089730|ref|NP_615805.1| - 5.1e-16 58.6 36.7 6.6e-16 58.2 25.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20089730|ref|NP_615805.1| - 3e-06 26.5 31.4 4.5e-06 25.9 21.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20089730|ref|NP_615805.1| - 5e-06 25.5 26.0 1.3e-05 24.2 18.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein URO-D PF01208.12 gi|20089731|ref|NP_615806.1| - 8.4e-65 218.9 0.0 9.6e-65 218.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF4445 PF14574.1 gi|20089733|ref|NP_615808.1| - 1.7e-112 375.6 2.8 2.4e-112 375.2 2.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_21 PF14697.1 gi|20089733|ref|NP_615808.1| - 1.7e-06 27.7 10.8 1.7e-06 27.7 7.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20089733|ref|NP_615808.1| - 7.6e-06 25.3 11.3 0.015 14.8 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20089733|ref|NP_615808.1| - 5.6e-05 23.3 12.6 0.00018 21.6 8.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089733|ref|NP_615808.1| - 5.9e-05 23.7 10.5 0.078 13.7 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|20089733|ref|NP_615808.1| - 0.00011 22.4 13.7 0.0028 18.0 10.2 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089733|ref|NP_615808.1| - 0.00019 21.1 15.3 0.044 13.6 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089733|ref|NP_615808.1| - 0.0003 20.5 14.7 0.0028 17.4 10.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089733|ref|NP_615808.1| - 0.0019 18.6 8.7 0.25 11.7 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089733|ref|NP_615808.1| - 0.0027 17.5 17.6 0.063 13.2 2.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20089733|ref|NP_615808.1| - 0.0035 17.6 7.2 0.018 15.3 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089733|ref|NP_615808.1| - 0.0092 15.9 14.5 0.043 13.8 10.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20089733|ref|NP_615808.1| - 0.027 14.9 14.9 1 10.0 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20089733|ref|NP_615808.1| - 0.11 12.8 13.7 0.18 12.2 2.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20089733|ref|NP_615808.1| - 1.5 9.2 8.3 3.7 8.0 5.8 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain PKD PF00801.15 gi|20089734|ref|NP_615809.1| - 5.1e-147 477.8 132.7 1.7e-18 66.0 4.7 11.9 12 0 0 12 12 12 10 PKD domain DUF3344 PF11824.3 gi|20089734|ref|NP_615809.1| - 9.3e-68 228.5 16.3 9.3e-68 228.5 11.3 5.8 5 1 1 6 6 5 1 Protein of unknown function (DUF3344) PQQ_3 PF13570.1 gi|20089734|ref|NP_615809.1| - 1e-51 171.8 53.5 1.3e-08 34.8 0.1 13.0 13 0 0 13 13 12 8 PQQ-like domain NosD PF05048.8 gi|20089734|ref|NP_615809.1| - 9.6e-42 142.7 25.9 9.6e-42 142.7 18.0 3.2 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) PQQ PF01011.16 gi|20089734|ref|NP_615809.1| - 1.9e-25 87.0 27.8 5.3e-05 22.5 0.1 8.6 8 0 0 8 8 7 6 PQQ enzyme repeat FG-GAP PF01839.18 gi|20089734|ref|NP_615809.1| - 8.9e-20 69.8 69.5 8.2e-06 25.3 0.8 10.3 10 0 0 10 10 10 5 FG-GAP repeat VCBS PF13517.1 gi|20089734|ref|NP_615809.1| - 7.1e-17 61.5 33.2 3.7e-08 33.6 4.5 12.8 8 4 4 12 12 10 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Beta_helix PF13229.1 gi|20089734|ref|NP_615809.1| - 1.3e-11 44.5 25.2 1.3e-11 44.5 17.5 3.5 2 0 0 2 2 1 1 Right handed beta helix region Transglut_N PF00868.15 gi|20089734|ref|NP_615809.1| - 0.0089 16.0 0.1 18 5.3 0.0 3.8 3 0 0 3 3 3 0 Transglutaminase family BBS1 PF14779.1 gi|20089734|ref|NP_615809.1| - 0.051 12.5 0.1 25 3.7 0.0 4.1 5 0 0 5 5 5 0 Ciliary BBSome complex subunit 1 EF-hand_8 PF13833.1 gi|20089734|ref|NP_615809.1| - 0.087 12.4 2.0 0.77 9.4 1.5 2.6 2 0 0 2 2 2 0 EF-hand domain pair AvrE PF11725.3 gi|20089734|ref|NP_615809.1| - 1.4 5.7 0.0 3.8 4.3 0.0 1.6 2 0 0 2 2 2 0 Pathogenicity factor EF-hand_6 PF13405.1 gi|20089734|ref|NP_615809.1| - 1.5 8.9 11.2 0.17 11.8 0.2 5.0 4 0 0 4 4 3 0 EF-hand domain PKD PF00801.15 gi|20089735|ref|NP_615810.1| - 4.1e-125 407.6 122.1 5.6e-18 64.4 4.9 11.9 10 0 0 10 10 10 9 PKD domain DUF3344 PF11824.3 gi|20089735|ref|NP_615810.1| - 5.2e-118 393.3 41.7 3.3e-71 239.8 12.1 6.5 7 2 2 9 9 5 2 Protein of unknown function (DUF3344) SBBP PF06739.6 gi|20089735|ref|NP_615810.1| - 1.2e-68 226.5 92.6 8.7e-11 41.4 3.5 8.4 7 0 0 7 7 7 7 Beta-propeller repeat CARDB PF07705.6 gi|20089735|ref|NP_615810.1| - 9e-19 67.4 9.9 9e-19 67.4 6.8 8.8 7 4 1 8 8 8 1 CARDB DUF1918 PF08940.6 gi|20089735|ref|NP_615810.1| - 0.0037 16.5 0.0 48 3.4 0.0 6.3 8 0 0 8 8 8 0 Domain of unknown function (DUF1918) EF-hand_1 PF00036.27 gi|20089735|ref|NP_615810.1| - 0.014 14.6 5.3 0.018 14.2 1.0 3.2 2 0 0 2 2 2 0 EF hand Phage_int_SAM_4 PF13495.1 gi|20089735|ref|NP_615810.1| - 0.18 12.1 0.0 0.45 10.8 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain EF-hand_6 PF13405.1 gi|20089735|ref|NP_615810.1| - 0.18 11.7 5.8 0.19 11.6 0.2 3.5 3 0 0 3 3 3 0 EF-hand domain EF-hand_8 PF13833.1 gi|20089735|ref|NP_615810.1| - 1.1 8.9 5.7 0.88 9.2 1.5 2.7 2 0 0 2 2 2 0 EF-hand domain pair NHL PF01436.16 gi|20089735|ref|NP_615810.1| - 1.3 9.1 13.0 23 5.2 0.3 5.9 5 0 0 5 5 5 0 NHL repeat DUF3512 PF12024.3 gi|20089735|ref|NP_615810.1| - 5.2 6.2 8.3 5.4 6.2 0.6 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3512) ABC2_membrane_4 PF12730.2 gi|20089736|ref|NP_615811.1| - 3.7e-19 68.8 32.8 4.9e-19 68.4 22.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20089736|ref|NP_615811.1| - 4.6e-11 42.1 21.9 7.3e-11 41.4 15.2 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20089736|ref|NP_615811.1| - 1.2e-05 24.6 20.1 1.2e-05 24.6 13.9 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|20089737|ref|NP_615812.1| - 1.5e-28 99.8 0.0 2.5e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089737|ref|NP_615812.1| - 1.3e-11 45.0 0.8 4.5e-10 39.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|20089737|ref|NP_615812.1| - 0.00079 18.5 0.0 0.0027 16.8 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain PIN_3 PF13470.1 gi|20089737|ref|NP_615812.1| - 0.011 16.4 0.0 0.022 15.4 0.0 1.5 1 1 0 1 1 1 0 PIN domain AAA_17 PF13207.1 gi|20089737|ref|NP_615812.1| - 0.03 15.1 0.1 0.1 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20089737|ref|NP_615812.1| - 0.061 13.2 0.1 0.099 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|20089737|ref|NP_615812.1| - 0.091 12.6 0.1 0.12 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20089737|ref|NP_615812.1| - 0.16 12.1 1.3 1 9.5 0.4 2.5 1 1 0 2 2 2 0 AAA domain Acetyltransf_1 PF00583.19 gi|20089738|ref|NP_615813.1| - 1.5e-14 53.7 0.0 2.4e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20089738|ref|NP_615813.1| - 4.7e-12 45.8 0.0 8.2e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20089738|ref|NP_615813.1| - 1.9e-09 37.6 0.0 2.6e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089738|ref|NP_615813.1| - 2.8e-08 33.6 0.0 5.2e-08 32.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|20089738|ref|NP_615813.1| - 0.00018 21.4 0.0 0.00023 21.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20089738|ref|NP_615813.1| - 0.00032 20.8 0.0 0.0004 20.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20089738|ref|NP_615813.1| - 0.00054 19.6 0.0 0.0019 17.9 0.0 1.8 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20089738|ref|NP_615813.1| - 0.00092 19.1 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20089738|ref|NP_615813.1| - 0.0072 16.1 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase URO-D PF01208.12 gi|20089739|ref|NP_615814.1| - 8.8e-76 255.0 0.0 1e-75 254.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) cobW PF02492.14 gi|20089740|ref|NP_615815.1| - 2.1e-34 118.5 0.0 3.8e-34 117.6 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|20089740|ref|NP_615815.1| - 1.7e-05 24.5 0.5 3.6e-05 23.4 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|20089740|ref|NP_615815.1| - 0.00095 18.6 0.3 0.0018 17.7 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|20089740|ref|NP_615815.1| - 0.0079 14.8 0.6 0.014 14.0 0.4 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|20089740|ref|NP_615815.1| - 0.011 15.2 0.2 0.02 14.3 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain T2SE PF00437.15 gi|20089740|ref|NP_615815.1| - 0.012 14.5 1.0 0.017 14.0 0.1 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein ArgK PF03308.11 gi|20089740|ref|NP_615815.1| - 0.017 13.9 0.4 0.1 11.3 0.2 2.1 2 0 0 2 2 2 0 ArgK protein AAA_18 PF13238.1 gi|20089740|ref|NP_615815.1| - 0.018 15.3 0.5 0.058 13.6 0.3 1.8 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|20089740|ref|NP_615815.1| - 0.021 14.3 1.2 0.081 12.4 0.1 2.3 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|20089740|ref|NP_615815.1| - 0.029 15.1 0.1 0.077 13.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|20089740|ref|NP_615815.1| - 0.031 13.3 0.1 0.055 12.5 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin GTP_EFTU PF00009.22 gi|20089740|ref|NP_615815.1| - 0.039 13.3 0.0 3.9 6.8 0.1 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|20089740|ref|NP_615815.1| - 0.052 13.0 0.1 0.13 11.7 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|20089740|ref|NP_615815.1| - 0.076 12.7 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|20089740|ref|NP_615815.1| - 0.079 12.5 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20089740|ref|NP_615815.1| - 0.082 13.0 0.3 0.16 12.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain Cpn60_TCP1 PF00118.19 gi|20089741|ref|NP_615816.1| - 8.4e-119 397.3 8.7 9.7e-119 397.1 6.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Hydantoinase_A PF01968.13 gi|20089742|ref|NP_615817.1| - 1.6e-86 290.0 2.3 2.4e-85 286.1 0.1 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20089742|ref|NP_615817.1| - 3.1e-41 140.7 6.4 2.7e-39 134.5 0.3 3.1 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20089742|ref|NP_615817.1| - 1.5e-05 23.5 2.2 0.04 12.2 0.1 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|20089742|ref|NP_615817.1| - 0.02 13.8 0.1 0.041 12.8 0.0 1.5 1 0 0 1 1 1 0 StbA protein HTH_38 PF13936.1 gi|20089742|ref|NP_615817.1| - 0.051 13.1 0.1 0.13 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PS_pyruv_trans PF04230.8 gi|20089742|ref|NP_615817.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase URO-D PF01208.12 gi|20089743|ref|NP_615818.1| - 4.8e-55 186.8 0.0 8.4e-55 186.0 0.0 1.4 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|20089743|ref|NP_615818.1| - 1.4e-22 79.8 0.1 3.4e-22 78.5 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20089743|ref|NP_615818.1| - 9.6e-18 64.0 0.2 2.3e-17 62.8 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain SHIPPO-rpt PF07004.7 gi|20089744|ref|NP_615819.1| - 0.036 14.9 0.1 0.084 13.8 0.1 1.6 1 0 0 1 1 1 0 Sperm-tail PG-rich repeat DUF1724 PF08350.5 gi|20089746|ref|NP_615821.1| - 1.6e-27 94.7 0.1 3.8e-27 93.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20089746|ref|NP_615821.1| - 1.4e-05 24.6 0.3 2.5e-05 23.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20089746|ref|NP_615821.1| - 0.0024 17.4 0.9 0.0052 16.4 0.6 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|20089746|ref|NP_615821.1| - 0.0091 15.6 0.1 0.028 14.1 0.1 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20089746|ref|NP_615821.1| - 0.015 15.0 0.1 0.035 13.8 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20089746|ref|NP_615821.1| - 0.019 14.7 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|20089746|ref|NP_615821.1| - 0.021 15.1 0.0 0.049 13.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20089746|ref|NP_615821.1| - 0.022 14.3 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|20089746|ref|NP_615821.1| - 0.024 14.0 3.2 0.051 12.9 2.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.5 gi|20089746|ref|NP_615821.1| - 0.03 13.8 0.2 0.093 12.2 0.1 1.8 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_34 PF13601.1 gi|20089746|ref|NP_615821.1| - 0.044 13.8 0.1 0.14 12.2 0.1 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Repressor_Mnt PF11423.3 gi|20089746|ref|NP_615821.1| - 0.083 12.2 0.3 0.25 10.6 0.0 2.0 2 0 0 2 2 2 0 Regulatory protein Mnt GAF_2 PF13185.1 gi|20089747|ref|NP_615822.1| - 5.4e-35 121.0 0.0 7.6e-21 75.1 0.0 2.4 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.21 gi|20089747|ref|NP_615822.1| - 2e-24 85.4 0.1 4.9e-24 84.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20089747|ref|NP_615822.1| - 8.3e-09 35.7 0.1 1.9e-06 28.2 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|20089747|ref|NP_615822.1| - 8.8e-09 35.5 0.0 0.0058 16.7 0.0 2.6 2 1 0 2 2 2 2 GAF domain PAS_4 PF08448.5 gi|20089747|ref|NP_615822.1| - 2e-08 34.2 0.0 3.6e-05 23.7 0.0 3.4 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|20089747|ref|NP_615822.1| - 2.1e-07 30.9 0.1 5.7e-06 26.3 0.0 2.5 2 0 0 2 2 2 1 PAS fold Autoind_bind PF03472.10 gi|20089747|ref|NP_615822.1| - 0.0084 15.4 0.0 0.026 13.8 0.0 1.8 2 0 0 2 2 2 1 Autoinducer binding domain HisKA PF00512.20 gi|20089747|ref|NP_615822.1| - 0.009 15.9 0.0 0.009 15.9 0.0 3.8 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain CLTH PF10607.4 gi|20089747|ref|NP_615822.1| - 0.016 14.8 0.1 0.049 13.3 0.0 1.8 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain PAS_8 PF13188.1 gi|20089747|ref|NP_615822.1| - 0.016 15.0 0.0 0.044 13.6 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS PF00989.19 gi|20089747|ref|NP_615822.1| - 0.025 14.3 0.1 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 PAS fold PAS_3 PF08447.6 gi|20089748|ref|NP_615823.1| - 3.4e-28 97.5 0.4 5e-19 68.1 0.1 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|20089748|ref|NP_615823.1| - 1.1e-08 35.4 0.0 6.9e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|20089748|ref|NP_615823.1| - 2e-07 31.0 0.0 2.6e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|20089748|ref|NP_615823.1| - 3.7e-05 23.4 0.1 0.00087 19.0 0.1 2.3 2 1 0 2 2 2 1 PAS fold DUF2075 PF09848.4 gi|20089748|ref|NP_615823.1| - 0.026 13.5 0.1 1.6 7.6 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) PAS_11 PF14598.1 gi|20089748|ref|NP_615823.1| - 0.053 13.4 0.0 0.59 10.0 0.0 2.2 2 0 0 2 2 2 0 PAS domain BAG PF02179.11 gi|20089748|ref|NP_615823.1| - 2 8.6 4.7 17 5.6 0.1 2.5 3 0 0 3 3 3 0 BAG domain PhoU PF01895.14 gi|20089750|ref|NP_615825.1| - 4.4e-24 84.7 5.5 2.2e-19 69.6 1.2 2.8 2 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|20089750|ref|NP_615825.1| - 1.4e-08 34.2 0.0 3.1e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Membr_traf_MHD PF10540.4 gi|20089750|ref|NP_615825.1| - 0.087 12.6 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 Munc13 (mammalian uncoordinated) homology domain ABC2_membrane PF01061.19 gi|20089751|ref|NP_615826.1| - 3.7e-32 111.1 20.5 5.1e-32 110.7 14.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|20089751|ref|NP_615826.1| - 1.2e-14 54.1 26.3 1.6e-14 53.7 18.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20089751|ref|NP_615826.1| - 0.21 10.3 19.1 0.029 13.2 9.2 2.0 1 1 0 2 2 2 0 ABC-2 family transporter protein DUF1109 PF06532.6 gi|20089751|ref|NP_615826.1| - 0.64 9.4 7.8 0.093 12.1 2.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1109) ABC_tran PF00005.22 gi|20089752|ref|NP_615827.1| - 1e-29 103.5 0.0 1.6e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089752|ref|NP_615827.1| - 2.5e-12 47.3 0.1 1.1e-08 35.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|20089752|ref|NP_615827.1| - 0.00025 20.5 0.3 0.00049 19.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20089752|ref|NP_615827.1| - 0.00031 21.1 0.0 0.00045 20.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20089752|ref|NP_615827.1| - 0.0047 16.0 0.0 0.089 11.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|20089752|ref|NP_615827.1| - 0.025 13.7 0.0 0.27 10.4 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|20089752|ref|NP_615827.1| - 0.092 12.1 0.1 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MukB PF04310.7 gi|20089752|ref|NP_615827.1| - 0.1 11.9 0.1 0.19 11.0 0.1 1.4 1 1 0 1 1 1 0 MukB N-terminal KdpD PF02702.12 gi|20089752|ref|NP_615827.1| - 0.11 11.6 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA PF00004.24 gi|20089752|ref|NP_615827.1| - 0.12 12.5 0.1 0.99 9.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiQ PF02361.11 gi|20089753|ref|NP_615828.1| - 1e-26 93.9 9.8 1.5e-26 93.3 6.8 1.3 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|20089754|ref|NP_615829.1| - 3.5e-56 189.3 0.0 4.2e-27 95.1 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|20089754|ref|NP_615829.1| - 1.5e-15 57.9 7.2 0.00014 21.9 0.0 4.4 2 2 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|20089754|ref|NP_615829.1| - 1.5e-11 43.9 1.4 2.2e-06 27.0 0.0 3.0 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20089754|ref|NP_615829.1| - 4.8e-11 42.0 0.2 0.0004 19.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|20089754|ref|NP_615829.1| - 3.9e-09 36.1 0.1 0.0027 17.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|20089754|ref|NP_615829.1| - 1.3e-07 31.8 0.7 0.00039 20.4 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|20089754|ref|NP_615829.1| - 2.5e-07 31.5 0.0 0.077 13.8 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|20089754|ref|NP_615829.1| - 3.2e-07 30.7 0.1 0.064 13.5 0.0 3.2 3 0 0 3 3 2 2 AAA domain T2SE PF00437.15 gi|20089754|ref|NP_615829.1| - 5.2e-07 28.8 1.0 0.0011 17.9 0.0 2.7 3 0 0 3 3 3 2 Type II/IV secretion system protein AAA_23 PF13476.1 gi|20089754|ref|NP_615829.1| - 5.9e-07 30.0 1.7 0.0074 16.6 0.0 3.1 2 1 1 3 3 2 2 AAA domain DUF258 PF03193.11 gi|20089754|ref|NP_615829.1| - 1.5e-06 27.5 0.3 0.011 14.9 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|20089754|ref|NP_615829.1| - 2.4e-06 27.3 0.0 0.054 13.4 0.0 3.2 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|20089754|ref|NP_615829.1| - 2.8e-06 27.5 1.9 0.033 14.3 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA_28 PF13521.1 gi|20089754|ref|NP_615829.1| - 5.6e-06 26.4 2.6 0.022 14.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|20089754|ref|NP_615829.1| - 1.3e-05 25.1 0.1 0.049 13.5 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|20089754|ref|NP_615829.1| - 1.6e-05 24.5 4.3 0.058 12.8 0.1 3.4 3 1 0 3 3 3 2 AAA-like domain NACHT PF05729.7 gi|20089754|ref|NP_615829.1| - 1.9e-05 24.3 0.4 0.18 11.4 0.0 2.6 2 0 0 2 2 2 2 NACHT domain FtsK_SpoIIIE PF01580.13 gi|20089754|ref|NP_615829.1| - 5.5e-05 22.7 0.6 0.0069 15.8 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|20089754|ref|NP_615829.1| - 5.8e-05 22.3 0.3 0.0066 15.6 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|20089754|ref|NP_615829.1| - 6.4e-05 22.1 3.4 2 7.3 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|20089754|ref|NP_615829.1| - 9.1e-05 22.2 0.1 0.055 13.1 0.0 2.5 2 0 0 2 2 2 1 Archaeal ATPase DAP3 PF10236.4 gi|20089754|ref|NP_615829.1| - 9.6e-05 21.4 1.1 0.08 11.8 0.1 2.3 2 0 0 2 2 2 2 Mitochondrial ribosomal death-associated protein 3 NTPase_1 PF03266.10 gi|20089754|ref|NP_615829.1| - 0.0001 22.0 0.1 0.4 10.3 0.1 2.6 2 0 0 2 2 2 2 NTPase RNA_helicase PF00910.17 gi|20089754|ref|NP_615829.1| - 0.00017 21.7 0.0 0.2 11.8 0.0 3.1 3 0 0 3 3 2 1 RNA helicase AAA_19 PF13245.1 gi|20089754|ref|NP_615829.1| - 0.00024 20.7 0.3 0.99 9.1 0.1 2.6 2 0 0 2 2 2 2 Part of AAA domain MobB PF03205.9 gi|20089754|ref|NP_615829.1| - 0.00031 20.4 0.6 0.17 11.5 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|20089754|ref|NP_615829.1| - 0.00039 20.1 1.1 0.19 11.4 0.1 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|20089754|ref|NP_615829.1| - 0.00042 20.5 0.5 0.093 12.9 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|20089754|ref|NP_615829.1| - 0.00054 20.4 0.1 0.21 12.1 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein AAA_30 PF13604.1 gi|20089754|ref|NP_615829.1| - 0.00074 19.1 0.1 0.37 10.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|20089754|ref|NP_615829.1| - 0.00078 19.3 0.0 1.6 8.7 0.0 2.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20089754|ref|NP_615829.1| - 0.00093 19.0 1.1 0.74 9.6 0.1 2.5 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|20089754|ref|NP_615829.1| - 0.00094 17.8 3.6 0.98 7.9 0.0 3.2 3 0 0 3 3 3 1 Predicted ATPase of the ABC class ArgK PF03308.11 gi|20089754|ref|NP_615829.1| - 0.00097 17.9 0.5 0.23 10.2 0.0 2.4 2 0 0 2 2 2 1 ArgK protein CbiA PF01656.18 gi|20089754|ref|NP_615829.1| - 0.0013 18.1 1.2 0.003 17.0 0.0 2.1 3 0 0 3 3 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Rad17 PF03215.10 gi|20089754|ref|NP_615829.1| - 0.0014 17.3 0.2 0.0058 15.3 0.0 1.8 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein cobW PF02492.14 gi|20089754|ref|NP_615829.1| - 0.0016 17.8 1.4 0.54 9.6 0.0 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|20089754|ref|NP_615829.1| - 0.0018 17.7 0.1 0.47 9.8 0.0 2.5 3 0 0 3 3 2 1 MutS domain V NB-ARC PF00931.17 gi|20089754|ref|NP_615829.1| - 0.0043 15.9 0.3 0.34 9.7 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain ATP-synt_ab PF00006.20 gi|20089754|ref|NP_615829.1| - 0.0047 16.4 0.0 0.69 9.3 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.17 gi|20089754|ref|NP_615829.1| - 0.0058 16.1 0.7 0.18 11.2 0.0 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|20089754|ref|NP_615829.1| - 0.0071 15.9 1.6 0.26 10.8 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 G-alpha PF00503.15 gi|20089754|ref|NP_615829.1| - 0.0071 15.0 0.3 2.4 6.7 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit PduV-EutP PF10662.4 gi|20089754|ref|NP_615829.1| - 0.0089 15.5 0.4 0.93 8.9 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation DUF815 PF05673.8 gi|20089754|ref|NP_615829.1| - 0.011 14.6 0.1 0.45 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|20089754|ref|NP_615829.1| - 0.013 15.1 0.9 5.3 6.5 0.1 2.6 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|20089754|ref|NP_615829.1| - 0.017 13.7 0.1 1.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Adenovirus IVa2 protein Zeta_toxin PF06414.7 gi|20089754|ref|NP_615829.1| - 0.017 14.2 0.3 1.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin APS_kinase PF01583.15 gi|20089754|ref|NP_615829.1| - 0.025 14.2 0.2 4.7 6.8 0.0 2.6 2 0 0 2 2 2 0 Adenylylsulphate kinase Viral_helicase1 PF01443.13 gi|20089754|ref|NP_615829.1| - 0.025 14.0 1.3 4.5 6.7 0.2 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.12 gi|20089754|ref|NP_615829.1| - 0.037 13.4 0.5 2.4 7.5 0.1 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein PIF1 PF05970.9 gi|20089754|ref|NP_615829.1| - 0.066 12.1 0.4 1.6 7.5 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase TrwB_AAD_bind PF10412.4 gi|20089754|ref|NP_615829.1| - 0.067 11.8 1.0 1.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_1 PF03029.12 gi|20089754|ref|NP_615829.1| - 0.069 12.6 1.9 3.9 6.9 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF3584 PF12128.3 gi|20089754|ref|NP_615829.1| - 0.11 9.8 0.2 0.17 9.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF87 PF01935.12 gi|20089754|ref|NP_615829.1| - 0.13 12.0 1.5 3.4 7.4 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 Pox_A32 PF04665.7 gi|20089754|ref|NP_615829.1| - 0.15 11.3 0.4 1.2 8.3 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein KaiC PF06745.8 gi|20089754|ref|NP_615829.1| - 0.86 8.6 6.8 2.8 6.9 0.1 3.3 4 1 0 4 4 3 0 KaiC DUF4469 PF14734.1 gi|20089755|ref|NP_615830.1| - 0.13 12.0 0.0 7.4 6.5 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4469) with IG-like fold CobN-Mg_chel PF02514.11 gi|20089756|ref|NP_615831.1| - 0 1254.3 0.0 0 1254.1 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|20089756|ref|NP_615831.1| - 0.0075 16.0 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3479) PQQ PF01011.16 gi|20089757|ref|NP_615832.1| - 6.9e-16 56.9 2.3 0.047 13.2 0.0 5.9 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_2 PF13360.1 gi|20089757|ref|NP_615832.1| - 1.5e-14 54.0 0.0 2.9e-12 46.5 0.0 2.9 1 1 0 2 2 2 1 PQQ-like domain PQQ_3 PF13570.1 gi|20089757|ref|NP_615832.1| - 5.7e-10 39.1 3.8 1.8 8.9 0.0 7.1 6 0 0 6 6 6 4 PQQ-like domain YHS PF04945.8 gi|20089757|ref|NP_615832.1| - 0.014 15.2 0.1 0.12 12.2 0.1 2.3 2 0 0 2 2 2 0 YHS domain Arylsulfotrans PF05935.6 gi|20089757|ref|NP_615832.1| - 0.039 12.4 0.3 0.45 8.9 0.0 2.6 2 2 0 2 2 2 0 Arylsulfotransferase (ASST) PD40 PF07676.7 gi|20089757|ref|NP_615832.1| - 0.16 11.7 3.1 42 3.9 0.0 4.5 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat PQQ PF01011.16 gi|20089758|ref|NP_615833.1| - 5e-07 28.9 0.2 0.0022 17.4 0.0 4.3 4 0 0 4 4 4 1 PQQ enzyme repeat PQQ_3 PF13570.1 gi|20089758|ref|NP_615833.1| - 0.00047 20.3 19.3 0.11 12.7 0.2 7.4 7 2 1 8 8 8 2 PQQ-like domain WD40 PF00400.27 gi|20089758|ref|NP_615833.1| - 0.0075 16.1 0.4 1.7 8.6 0.0 3.5 3 0 0 3 3 3 1 WD domain, G-beta repeat S-layer PF07752.6 gi|20089760|ref|NP_615835.1| - 1.2e-85 286.8 9.3 1.1e-65 221.3 0.1 3.0 2 1 1 3 3 3 3 S-layer protein Autoind_bind PF03472.10 gi|20089760|ref|NP_615835.1| - 0.039 13.2 0.0 1.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Autoinducer binding domain S_layer_N PF05123.7 gi|20089760|ref|NP_615835.1| - 0.47 10.0 3.1 5.9 6.4 0.1 2.6 2 1 0 2 2 2 0 S-layer like family, N-terminal region VWA_2 PF13519.1 gi|20089761|ref|NP_615836.1| - 1.6e-19 70.6 0.0 2.7e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|20089761|ref|NP_615836.1| - 7.4e-14 51.3 0.1 1.3e-09 37.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|20089761|ref|NP_615836.1| - 7e-11 42.1 0.0 1.3e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|20089761|ref|NP_615836.1| - 2.1e-09 37.2 0.1 1.9e-05 24.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|20089761|ref|NP_615836.1| - 2.2e-08 33.2 0.5 3.4e-05 22.8 0.0 3.3 2 2 0 2 2 2 2 MCM2/3/5 family AAA_22 PF13401.1 gi|20089761|ref|NP_615836.1| - 0.00026 21.1 0.0 0.0022 18.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|20089761|ref|NP_615836.1| - 0.00049 19.6 0.1 0.078 12.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain VWA_3 PF13768.1 gi|20089761|ref|NP_615836.1| - 0.0007 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2828 PF11443.3 gi|20089761|ref|NP_615836.1| - 0.0021 16.3 4.5 0.87 7.7 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2828) AAA_16 PF13191.1 gi|20089761|ref|NP_615836.1| - 0.0075 16.2 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_3 PF07726.6 gi|20089761|ref|NP_615836.1| - 0.013 15.0 0.0 1.7 8.2 0.0 3.0 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|20089761|ref|NP_615836.1| - 0.067 13.3 0.0 0.41 10.8 0.0 2.3 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) RR_TM4-6 PF06459.7 gi|20089761|ref|NP_615836.1| - 0.41 10.4 21.9 0.69 9.7 15.1 1.3 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Mem_trans PF03547.13 gi|20089761|ref|NP_615836.1| - 1.3 7.1 4.1 1.7 6.8 2.8 1.1 1 0 0 1 1 1 0 Membrane transport protein Vfa1 PF08432.5 gi|20089761|ref|NP_615836.1| - 1.5 8.8 29.9 2.5 8.0 20.7 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Neur_chan_memb PF02932.11 gi|20089761|ref|NP_615836.1| - 2.3 8.0 10.7 3.8 7.3 7.4 1.4 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Zip PF02535.17 gi|20089761|ref|NP_615836.1| - 3.1 6.7 9.8 4.6 6.1 6.8 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter AUX_IAA PF02309.11 gi|20089761|ref|NP_615836.1| - 5 6.8 16.8 8.5 6.0 11.7 1.3 1 0 0 1 1 1 0 AUX/IAA family MIP-T3 PF10243.4 gi|20089761|ref|NP_615836.1| - 5.9 5.2 41.4 7.9 4.8 28.7 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 ABC_tran PF00005.22 gi|20089762|ref|NP_615837.1| - 9.8e-31 106.8 0.0 1.4e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20089762|ref|NP_615837.1| - 6.7e-19 67.9 0.1 1.3e-18 67.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20089762|ref|NP_615837.1| - 3.7e-11 43.5 1.0 7.2e-08 32.7 0.2 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20089762|ref|NP_615837.1| - 4.8e-05 22.6 0.0 7.6e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|20089762|ref|NP_615837.1| - 0.0016 17.0 0.2 0.099 11.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|20089762|ref|NP_615837.1| - 0.0018 18.4 0.0 0.0058 16.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|20089762|ref|NP_615837.1| - 0.0085 16.3 0.2 0.027 14.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20089762|ref|NP_615837.1| - 0.019 14.9 0.0 0.031 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|20089762|ref|NP_615837.1| - 0.027 13.5 0.1 0.57 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain tRNA_lig_kinase PF08303.6 gi|20089762|ref|NP_615837.1| - 0.056 13.3 0.0 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 tRNA ligase kinase domain AAA_22 PF13401.1 gi|20089762|ref|NP_615837.1| - 0.058 13.5 1.7 0.62 10.2 1.1 2.2 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|20089762|ref|NP_615837.1| - 0.063 13.2 0.0 0.41 10.5 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|20089762|ref|NP_615837.1| - 0.091 12.3 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|20089762|ref|NP_615837.1| - 0.11 11.6 0.3 0.31 10.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|20089762|ref|NP_615837.1| - 0.11 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|20089762|ref|NP_615837.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|20089763|ref|NP_615838.1| - 9.7e-28 97.1 0.1 1.3e-27 96.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20089763|ref|NP_615838.1| - 1.4e-13 50.9 0.6 2.8e-13 50.0 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20089763|ref|NP_615838.1| - 1.7e-10 41.3 0.0 3.4e-09 37.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20089763|ref|NP_615838.1| - 2.5e-06 26.9 0.1 3.4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20089763|ref|NP_615838.1| - 0.00067 19.8 0.4 0.0053 16.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|20089763|ref|NP_615838.1| - 0.006 16.0 0.1 0.025 13.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|20089763|ref|NP_615838.1| - 0.014 14.9 0.4 0.035 13.5 0.3 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|20089763|ref|NP_615838.1| - 0.024 13.7 0.1 0.7 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF2075 PF09848.4 gi|20089763|ref|NP_615838.1| - 0.036 13.0 0.1 0.051 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.9 gi|20089763|ref|NP_615838.1| - 0.042 13.5 0.2 0.14 11.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|20089763|ref|NP_615838.1| - 0.043 13.4 0.0 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.10 gi|20089763|ref|NP_615838.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA PF00004.24 gi|20089763|ref|NP_615838.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BPD_transp_1 PF00528.17 gi|20089764|ref|NP_615839.1| - 6.3e-35 120.3 10.8 6.3e-35 120.3 7.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20089764|ref|NP_615839.1| - 1.9e-14 52.7 0.5 1.9e-14 52.7 0.3 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|20089765|ref|NP_615840.1| - 9.1e-31 106.7 7.3 9.1e-31 106.7 5.1 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component CobN-Mg_chel PF02514.11 gi|20089766|ref|NP_615841.1| - 0 1160.6 0.0 0 1160.4 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase SBP_bac_5 PF00496.17 gi|20089767|ref|NP_615842.1| - 2.4e-90 303.0 0.1 2.8e-90 302.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle S-layer PF07752.6 gi|20089768|ref|NP_615843.1| - 4.1e-183 606.2 26.1 1.1e-94 316.4 2.8 2.1 2 0 0 2 2 2 2 S-layer protein DNA_pol_B PF00136.16 gi|20089769|ref|NP_615844.1| - 1.1e-112 377.2 0.0 1.6e-112 376.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|20089769|ref|NP_615844.1| - 4.1e-52 177.0 0.0 6.6e-52 176.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|20089769|ref|NP_615844.1| - 0.00085 18.9 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB PBP_like_2 PF12849.2 gi|20089771|ref|NP_615846.1| - 3.4e-49 167.8 2.9 5.4e-49 167.1 2.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|20089771|ref|NP_615846.1| - 1.5e-19 69.6 0.0 2e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|20089771|ref|NP_615846.1| - 3.6e-07 30.0 0.0 6.5e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4097 PF13349.1 gi|20089771|ref|NP_615846.1| - 0.00037 20.0 0.2 0.003 17.1 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4097) BPD_transp_1 PF00528.17 gi|20089772|ref|NP_615847.1| - 1.2e-23 83.5 18.1 1.2e-23 83.5 12.6 2.2 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component PKD_channel PF08016.7 gi|20089772|ref|NP_615847.1| - 0.34 9.2 3.7 0.099 11.0 0.2 1.7 2 0 0 2 2 2 0 Polycystin cation channel DUF1295 PF06966.7 gi|20089772|ref|NP_615847.1| - 0.36 10.0 0.0 0.36 10.0 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1295) DUF4227 PF14004.1 gi|20089772|ref|NP_615847.1| - 2.5 8.0 5.4 3.7 7.4 1.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) BPD_transp_1 PF00528.17 gi|20089773|ref|NP_615848.1| - 1.6e-26 92.9 13.9 1.6e-26 92.9 9.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2780 PF11075.3 gi|20089773|ref|NP_615848.1| - 0.012 15.6 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function VcgC/VcgE (DUF2780) DUF3333 PF11812.3 gi|20089773|ref|NP_615848.1| - 0.016 15.2 1.1 0.047 13.6 0.7 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) Oxidored_q5_N PF01059.12 gi|20089773|ref|NP_615848.1| - 0.17 11.8 0.2 0.17 11.8 0.1 2.5 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus ABC_tran PF00005.22 gi|20089774|ref|NP_615849.1| - 2.8e-31 108.6 0.0 3.9e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089774|ref|NP_615849.1| - 4.9e-14 52.9 0.0 2.7e-07 30.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20089774|ref|NP_615849.1| - 1.4e-08 34.2 0.0 1.9e-06 27.2 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|20089774|ref|NP_615849.1| - 1.4e-05 24.3 0.0 2.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|20089774|ref|NP_615849.1| - 0.00042 19.7 0.0 0.00083 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20089774|ref|NP_615849.1| - 0.00063 19.8 0.0 0.0018 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20089774|ref|NP_615849.1| - 0.00091 18.3 1.4 0.16 10.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|20089774|ref|NP_615849.1| - 0.0019 16.7 0.0 0.17 10.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20089774|ref|NP_615849.1| - 0.0022 17.9 0.0 0.018 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|20089774|ref|NP_615849.1| - 0.0028 18.0 0.0 0.0056 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|20089774|ref|NP_615849.1| - 0.0032 16.2 0.0 0.0049 15.6 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|20089774|ref|NP_615849.1| - 0.0057 16.3 0.0 0.69 9.7 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|20089774|ref|NP_615849.1| - 0.0078 16.0 0.0 0.01 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|20089774|ref|NP_615849.1| - 0.018 15.8 0.0 0.026 15.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|20089774|ref|NP_615849.1| - 0.022 14.4 0.0 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_25 PF13481.1 gi|20089774|ref|NP_615849.1| - 0.023 14.1 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|20089774|ref|NP_615849.1| - 0.026 14.7 0.0 0.59 10.3 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|20089774|ref|NP_615849.1| - 0.029 13.8 0.1 0.074 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain PPV_E1_C PF00519.12 gi|20089774|ref|NP_615849.1| - 0.034 12.7 0.0 0.052 12.1 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase Adeno_IVa2 PF02456.10 gi|20089774|ref|NP_615849.1| - 0.056 12.0 0.3 0.14 10.7 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_18 PF13238.1 gi|20089774|ref|NP_615849.1| - 0.068 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|20089774|ref|NP_615849.1| - 0.09 12.7 0.0 0.16 11.9 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Gemin6 PF06372.7 gi|20089774|ref|NP_615849.1| - 0.1 11.9 0.1 0.31 10.3 0.0 1.7 2 0 0 2 2 2 0 Gemin6 protein SbcCD_C PF13558.1 gi|20089774|ref|NP_615849.1| - 0.11 12.3 0.1 1.7 8.5 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Viral_helicase1 PF01443.13 gi|20089774|ref|NP_615849.1| - 0.12 11.8 0.1 0.33 10.4 0.0 1.7 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MobB PF03205.9 gi|20089774|ref|NP_615849.1| - 0.13 11.9 0.2 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|20089774|ref|NP_615849.1| - 0.13 12.3 0.0 0.35 11.0 0.0 1.8 2 0 0 2 2 1 0 RNA helicase ABC_ATPase PF09818.4 gi|20089774|ref|NP_615849.1| - 0.15 10.5 0.0 6.8 5.1 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PhoU PF01895.14 gi|20089775|ref|NP_615850.1| - 8.3e-35 119.1 5.9 2.8e-20 72.5 0.5 2.1 2 0 0 2 2 2 2 PhoU domain RNA_pol_Rpo13 PF12136.3 gi|20089775|ref|NP_615850.1| - 0.051 13.2 0.2 0.12 12.1 0.2 1.6 1 0 0 1 1 1 0 RNA polymerase Rpo13 subunit HTH domain Amidohydro_4 PF13147.1 gi|20089776|ref|NP_615851.1| - 2e-29 103.5 0.0 5.4e-29 102.0 0.0 1.7 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|20089776|ref|NP_615851.1| - 1.4e-17 64.3 0.1 5e-17 62.5 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20089776|ref|NP_615851.1| - 3e-12 46.1 0.1 9.1e-12 44.6 0.1 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|20089776|ref|NP_615851.1| - 1.3e-06 27.9 0.0 0.00083 18.6 0.0 2.8 2 1 0 2 2 2 2 Amidohydrolase family KH_1 PF00013.24 gi|20089777|ref|NP_615852.1| - 5.5e-14 51.5 8.3 1.2e-09 37.7 0.5 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|20089777|ref|NP_615852.1| - 1.8e-08 33.8 3.0 1.1e-05 24.8 0.1 2.6 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|20089777|ref|NP_615852.1| - 0.00011 21.6 4.7 0.027 14.0 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|20089777|ref|NP_615852.1| - 0.013 15.0 4.4 1.7 8.3 0.1 3.2 2 1 1 3 3 3 0 KH domain RIO1 PF01163.17 gi|20089778|ref|NP_615853.1| - 8.6e-63 211.1 0.2 1.3e-62 210.5 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|20089778|ref|NP_615853.1| - 9.6e-08 31.4 0.0 1.6e-07 30.7 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|20089778|ref|NP_615853.1| - 0.00058 18.9 0.0 0.011 14.8 0.0 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|20089778|ref|NP_615853.1| - 0.0006 19.6 0.0 0.018 14.7 0.0 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|20089778|ref|NP_615853.1| - 0.099 11.6 0.0 0.2 10.6 0.0 1.5 2 0 0 2 2 2 0 Protein tyrosine kinase eIF-1a PF01176.14 gi|20089779|ref|NP_615854.1| - 5.4e-22 76.9 0.4 6.7e-22 76.6 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Med14 PF08638.6 gi|20089779|ref|NP_615854.1| - 0.12 11.6 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Mediator complex subunit MED14 SNF PF00209.13 gi|20089780|ref|NP_615855.1| - 1.6e-57 195.1 33.4 2.5e-33 115.3 10.6 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family NAC PF01849.13 gi|20089781|ref|NP_615856.1| - 8.9e-19 66.7 5.2 8.9e-19 66.7 2.9 1.5 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|20089781|ref|NP_615856.1| - 1.9e-07 30.6 3.3 2.5e-07 30.3 0.1 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|20089781|ref|NP_615856.1| - 0.00015 21.2 0.1 0.00023 20.6 0.0 1.2 1 0 0 1 1 1 1 UBA-like domain DUF4097 PF13349.1 gi|20089781|ref|NP_615856.1| - 0.026 14.0 0.4 0.027 14.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) PepSY_2 PF13670.1 gi|20089781|ref|NP_615856.1| - 0.048 13.5 0.3 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain RTC4 PF14474.1 gi|20089781|ref|NP_615856.1| - 0.073 13.0 0.4 0.28 11.1 0.0 1.9 2 1 0 2 2 2 0 RTC4-like domain Cu_amine_oxidN1 PF07833.6 gi|20089781|ref|NP_615856.1| - 0.077 13.3 0.5 0.095 13.0 0.3 1.2 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain B5 PF03484.10 gi|20089781|ref|NP_615856.1| - 0.077 12.8 0.2 2.8 7.8 0.1 2.1 2 0 0 2 2 2 0 tRNA synthetase B5 domain LigB PF02900.13 gi|20089781|ref|NP_615856.1| - 0.081 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase IL2 PF00715.12 gi|20089781|ref|NP_615856.1| - 0.15 11.7 0.7 0.28 10.9 0.3 1.6 1 1 0 1 1 1 0 Interleukin 2 DUF3867 PF12983.2 gi|20089781|ref|NP_615856.1| - 0.16 11.8 2.4 0.26 11.2 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3867) ANTAR PF03861.9 gi|20089781|ref|NP_615856.1| - 0.24 10.9 1.9 0.86 9.2 0.0 2.7 3 1 1 4 4 4 0 ANTAR domain Fe-S_biosyn PF01521.15 gi|20089782|ref|NP_615857.1| - 9.9e-13 48.0 0.0 1.1e-12 47.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Mrr_cat PF04471.7 gi|20089783|ref|NP_615858.1| - 0.0013 18.5 0.0 0.0084 15.9 0.0 2.1 1 1 0 1 1 1 1 Restriction endonuclease GDE_C PF06202.9 gi|20089784|ref|NP_615859.1| - 3e-148 493.4 0.0 8e-148 492.0 0.0 1.6 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|20089784|ref|NP_615859.1| - 7.8e-69 231.3 0.0 1.1e-68 230.8 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|20089784|ref|NP_615859.1| - 2.1e-07 29.9 0.2 6.8e-07 28.3 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|20089784|ref|NP_615859.1| - 0.00056 18.4 0.0 0.028 12.8 0.0 2.6 2 1 0 2 2 2 1 Alkaline and neutral invertase Bac_rhamnosid PF05592.6 gi|20089784|ref|NP_615859.1| - 0.0047 15.2 0.0 0.0066 14.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase PKD PF00801.15 gi|20089785|ref|NP_615860.1| - 3e-14 52.4 3.2 3e-14 52.4 2.2 2.0 2 0 0 2 2 2 1 PKD domain CarboxypepD_reg PF13620.1 gi|20089785|ref|NP_615860.1| - 0.015 15.3 1.2 0.015 15.3 0.8 3.2 3 1 1 4 4 4 0 Carboxypeptidase regulatory-like domain PRA-CH PF01502.13 gi|20089786|ref|NP_615861.1| - 2.4e-38 129.5 0.7 3.3e-38 129.1 0.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Tropomodulin PF03250.9 gi|20089786|ref|NP_615861.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Tropomodulin T2SE PF00437.15 gi|20089787|ref|NP_615862.1| - 2.3e-12 46.3 0.1 4.1e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|20089787|ref|NP_615862.1| - 3.5e-08 32.9 1.0 1.3e-07 31.1 0.7 2.0 1 0 0 1 1 1 1 KH domain PIN PF01850.16 gi|20089787|ref|NP_615862.1| - 2.8e-07 30.9 0.0 7.3e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|20089787|ref|NP_615862.1| - 7.8e-05 22.7 0.0 0.0002 21.4 0.0 1.7 1 0 0 1 1 1 1 PIN domain AAA_17 PF13207.1 gi|20089787|ref|NP_615862.1| - 0.00018 22.3 0.0 0.00055 20.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|20089787|ref|NP_615862.1| - 0.00042 20.0 0.0 0.0014 18.3 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain KH_2 PF07650.12 gi|20089787|ref|NP_615862.1| - 0.00047 19.6 1.4 0.0016 17.9 0.9 1.9 1 0 0 1 1 1 1 KH domain TIP49 PF06068.8 gi|20089787|ref|NP_615862.1| - 0.00064 18.5 0.3 0.0019 16.9 0.0 1.8 2 0 0 2 2 2 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|20089787|ref|NP_615862.1| - 0.00084 18.4 0.0 0.0017 17.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin KH_3 PF13014.1 gi|20089787|ref|NP_615862.1| - 0.0015 18.1 0.5 0.0053 16.3 0.3 1.9 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.1 gi|20089787|ref|NP_615862.1| - 0.0018 18.3 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain KH_4 PF13083.1 gi|20089787|ref|NP_615862.1| - 0.003 17.1 0.4 0.0093 15.5 0.3 1.8 1 0 0 1 1 1 1 KH domain AAA_33 PF13671.1 gi|20089787|ref|NP_615862.1| - 0.0037 17.1 0.0 0.008 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20089787|ref|NP_615862.1| - 0.0051 16.9 0.0 0.09 12.9 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_29 PF13555.1 gi|20089787|ref|NP_615862.1| - 0.012 15.0 0.0 0.03 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|20089787|ref|NP_615862.1| - 0.013 15.7 0.0 0.055 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|20089787|ref|NP_615862.1| - 0.016 15.4 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|20089787|ref|NP_615862.1| - 0.02 14.6 0.0 0.056 13.1 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_25 PF13481.1 gi|20089787|ref|NP_615862.1| - 0.021 14.2 0.0 0.042 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|20089787|ref|NP_615862.1| - 0.045 12.8 0.0 0.12 11.5 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_5 PF07728.9 gi|20089787|ref|NP_615862.1| - 0.047 13.4 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|20089787|ref|NP_615862.1| - 0.048 13.2 0.1 0.11 12.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.15 gi|20089787|ref|NP_615862.1| - 0.055 13.1 0.0 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase IstB_IS21 PF01695.12 gi|20089787|ref|NP_615862.1| - 0.058 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein KTI12 PF08433.5 gi|20089787|ref|NP_615862.1| - 0.064 12.4 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_11 PF13086.1 gi|20089787|ref|NP_615862.1| - 0.068 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|20089787|ref|NP_615862.1| - 0.094 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase UPF0079 PF02367.12 gi|20089787|ref|NP_615862.1| - 0.099 12.2 0.0 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Thymidylate_kin PF02223.12 gi|20089787|ref|NP_615862.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase NACHT PF05729.7 gi|20089787|ref|NP_615862.1| - 0.14 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.12 gi|20089787|ref|NP_615862.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PPV_E1_C PF00519.12 gi|20089787|ref|NP_615862.1| - 0.31 9.6 0.0 0.46 9.0 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase Reo_sigmaC PF04582.7 gi|20089788|ref|NP_615863.1| - 0.00035 19.8 0.8 0.00057 19.1 0.6 1.4 1 0 0 1 1 1 1 Reovirus sigma C capsid protein TBPIP PF07106.8 gi|20089788|ref|NP_615863.1| - 0.0018 17.8 0.6 0.11 11.9 0.1 2.2 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Baculo_PEP_C PF04513.7 gi|20089788|ref|NP_615863.1| - 0.0021 17.8 0.2 0.007 16.1 0.1 1.8 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_2 PF01920.15 gi|20089788|ref|NP_615863.1| - 0.0079 15.9 0.2 6.2 6.6 0.0 2.9 2 1 1 3 3 3 2 Prefoldin subunit Sipho_Gp157 PF05565.6 gi|20089788|ref|NP_615863.1| - 0.11 12.1 0.4 14 5.2 0.0 2.3 2 1 0 2 2 2 0 Siphovirus Gp157 DUF2730 PF10805.3 gi|20089788|ref|NP_615863.1| - 0.22 11.2 0.7 28 4.4 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) Fzo_mitofusin PF04799.8 gi|20089788|ref|NP_615863.1| - 0.24 10.7 1.0 0.55 9.5 0.1 2.0 2 0 0 2 2 2 0 fzo-like conserved region Tropomyosin PF00261.15 gi|20089788|ref|NP_615863.1| - 0.53 9.3 2.2 2.7 7.0 0.2 2.1 2 0 0 2 2 2 0 Tropomyosin CarboxypepD_reg PF13620.1 gi|20089789|ref|NP_615864.1| - 0.0038 17.2 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_3_2 PF12245.3 gi|20089789|ref|NP_615864.1| - 0.0054 16.2 0.8 0.0093 15.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) Big_1 PF02369.11 gi|20089790|ref|NP_615865.1| - 6e-06 26.1 1.5 9e-06 25.5 1.1 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|20089790|ref|NP_615865.1| - 0.0013 18.7 1.3 0.0053 16.7 0.9 2.0 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|20089790|ref|NP_615865.1| - 0.027 14.1 0.2 0.056 13.0 0.1 1.5 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) GATase PF00117.23 gi|20089791|ref|NP_615866.1| - 4.7e-32 111.0 0.0 5.3e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|20089791|ref|NP_615866.1| - 8.7e-08 32.0 0.0 4.6e-07 29.6 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|20089791|ref|NP_615866.1| - 1.7e-06 27.6 0.0 3.5e-06 26.6 0.0 1.5 2 0 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|20089791|ref|NP_615866.1| - 3e-06 26.9 0.6 3.2e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|20089791|ref|NP_615866.1| - 0.05 13.0 0.0 0.091 12.2 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family AIRS_C PF02769.17 gi|20089792|ref|NP_615867.1| - 3.6e-17 62.7 0.8 6.2e-17 62.0 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|20089792|ref|NP_615867.1| - 2.3e-13 50.1 0.0 7.1e-13 48.6 0.0 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NfeD PF01957.13 gi|20089793|ref|NP_615868.1| - 1.4e-36 125.7 1.8 1.4e-36 125.7 1.2 2.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|20089793|ref|NP_615868.1| - 4.9e-06 26.3 0.7 7.5e-06 25.7 0.5 1.2 1 0 0 1 1 1 1 Clp protease FMN_dh PF01070.13 gi|20089793|ref|NP_615868.1| - 0.0051 15.7 0.0 0.0065 15.3 0.0 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ECH PF00378.15 gi|20089793|ref|NP_615868.1| - 0.0095 15.0 0.1 1.3 8.0 0.0 2.3 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|20089793|ref|NP_615868.1| - 0.048 12.4 0.4 0.075 11.7 0.3 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Band_7 PF01145.20 gi|20089794|ref|NP_615869.1| - 5.9e-40 137.0 2.0 7.7e-40 136.6 1.4 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|20089794|ref|NP_615869.1| - 7e-05 22.4 0.1 0.00013 21.5 0.1 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family DHH PF01368.15 gi|20089795|ref|NP_615870.1| - 9.5e-11 41.5 0.1 2.1e-10 40.4 0.0 1.6 1 1 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|20089795|ref|NP_615870.1| - 1e-09 38.1 0.0 2.3e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|20089795|ref|NP_615870.1| - 5.4e-09 35.9 18.6 1.5e-07 31.3 7.3 2.9 1 1 3 4 4 4 3 DnaJ central domain S1 PF00575.18 gi|20089795|ref|NP_615870.1| - 0.00086 19.3 0.2 0.00086 19.3 0.1 2.0 2 0 0 2 2 2 1 S1 RNA binding domain Cript PF10235.4 gi|20089795|ref|NP_615870.1| - 1 9.7 7.1 0.91 9.9 3.6 1.9 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT Acetyltransf_7 PF13508.1 gi|20089796|ref|NP_615871.1| - 8.3e-16 57.9 0.0 1.2e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20089796|ref|NP_615871.1| - 1.5e-13 50.5 0.0 2.6e-13 49.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|20089796|ref|NP_615871.1| - 1.3e-09 38.1 0.0 1.6e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20089796|ref|NP_615871.1| - 4.1e-08 33.1 0.0 8.6e-08 32.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20089796|ref|NP_615871.1| - 0.0027 17.8 0.0 0.0033 17.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20089796|ref|NP_615871.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.1 gi|20089796|ref|NP_615871.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Pribosyltran PF00156.22 gi|20089797|ref|NP_615872.1| - 7e-23 80.7 0.3 1.2e-22 79.9 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|20089797|ref|NP_615872.1| - 4.8e-07 29.2 0.5 7.5e-06 25.3 0.3 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|20089797|ref|NP_615872.1| - 2e-05 23.9 1.6 4.3e-05 22.8 0.3 1.9 1 1 1 2 2 2 1 Uracil phosphoribosyltransferase HTH_7 PF02796.10 gi|20089797|ref|NP_615872.1| - 0.00073 19.3 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|20089797|ref|NP_615872.1| - 0.0067 16.0 0.1 0.032 13.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain GerE PF00196.14 gi|20089797|ref|NP_615872.1| - 0.025 13.9 0.0 0.053 12.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PAX PF00292.13 gi|20089797|ref|NP_615872.1| - 0.028 14.1 0.3 1.2 8.8 0.0 2.3 2 1 0 2 2 2 0 'Paired box' domain CBAH PF02275.13 gi|20089797|ref|NP_615872.1| - 0.029 13.7 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Linear amide C-N hydrolases, choloylglycine hydrolase family PRTase_3 PF15610.1 gi|20089797|ref|NP_615872.1| - 0.032 13.1 0.1 0.1 11.5 0.0 1.7 1 1 1 2 2 2 0 PRTase ComF-like Pribosyl_synth PF14572.1 gi|20089797|ref|NP_615872.1| - 0.044 13.5 0.1 0.066 12.9 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain HTH_23 PF13384.1 gi|20089797|ref|NP_615872.1| - 0.044 13.4 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain DUF2481 PF10654.4 gi|20089797|ref|NP_615872.1| - 0.045 13.4 0.0 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Sigma70_r4_2 PF08281.7 gi|20089797|ref|NP_615872.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|20089797|ref|NP_615872.1| - 0.13 11.6 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 PIN_4 PF13638.1 gi|20089798|ref|NP_615873.1| - 0.0013 18.8 0.4 0.0023 18.0 0.3 1.5 1 1 0 1 1 1 1 PIN domain Rad50_zn_hook PF04423.9 gi|20089798|ref|NP_615873.1| - 0.0089 15.4 2.1 0.0089 15.4 1.4 1.9 2 0 0 2 2 2 1 Rad50 zinc hook motif PIN PF01850.16 gi|20089798|ref|NP_615873.1| - 0.012 15.9 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 0 PIN domain zinc-ribbons_6 PF07191.7 gi|20089798|ref|NP_615873.1| - 0.021 14.5 0.9 0.046 13.5 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbons UPF0278 PF08745.6 gi|20089798|ref|NP_615873.1| - 0.045 13.0 0.4 0.11 11.7 0.2 1.6 1 1 0 2 2 2 0 UPF0278 family DNA_ligase_ZBD PF03119.11 gi|20089798|ref|NP_615873.1| - 0.046 13.4 0.3 0.094 12.4 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.14 gi|20089798|ref|NP_615873.1| - 0.075 12.5 1.8 0.17 11.3 1.2 1.6 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-C3HC4_3 PF13920.1 gi|20089798|ref|NP_615873.1| - 0.12 12.0 0.7 0.21 11.2 0.5 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|20089798|ref|NP_615873.1| - 0.63 9.8 3.1 1.9 8.2 2.2 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2072 PF09845.4 gi|20089798|ref|NP_615873.1| - 2.7 7.9 6.1 1.8 8.4 2.0 2.1 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) DUF169 PF02596.10 gi|20089799|ref|NP_615874.1| - 1.2e-68 230.8 0.2 1.3e-68 230.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Oxidored_molyb PF00174.14 gi|20089800|ref|NP_615875.1| - 0.067 12.6 0.0 0.099 12.0 0.0 1.4 1 1 0 1 1 1 0 Oxidoreductase molybdopterin binding domain Ribosomal_S8e PF01201.17 gi|20089801|ref|NP_615876.1| - 1.5e-36 125.4 7.0 1.7e-36 125.3 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e MraY_sig1 PF10555.4 gi|20089801|ref|NP_615876.1| - 0.13 11.6 0.5 0.35 10.2 0.3 1.8 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AsnC_trans_reg PF01037.16 gi|20089802|ref|NP_615877.1| - 2.2e-17 62.5 0.1 4.6e-17 61.4 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|20089802|ref|NP_615877.1| - 4.2e-12 45.2 0.1 1.4e-11 43.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|20089802|ref|NP_615877.1| - 4.7e-10 38.8 0.5 1.1e-09 37.6 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|20089802|ref|NP_615877.1| - 9e-07 28.6 0.1 1.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|20089802|ref|NP_615877.1| - 1.6e-05 24.5 0.0 2.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|20089802|ref|NP_615877.1| - 0.00019 21.4 0.0 0.00035 20.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|20089802|ref|NP_615877.1| - 0.00023 20.7 0.1 0.00073 19.1 0.1 1.9 1 1 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|20089802|ref|NP_615877.1| - 0.00023 20.8 0.0 0.00086 19.0 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|20089802|ref|NP_615877.1| - 0.00029 20.3 0.2 0.00048 19.5 0.1 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit DUF2513 PF10711.4 gi|20089802|ref|NP_615877.1| - 0.00068 19.6 0.3 0.0013 18.7 0.1 1.6 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) MarR PF01047.17 gi|20089802|ref|NP_615877.1| - 0.00091 18.8 0.1 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|20089802|ref|NP_615877.1| - 0.0017 18.2 0.1 0.0046 16.8 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|20089802|ref|NP_615877.1| - 0.004 17.4 0.1 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|20089802|ref|NP_615877.1| - 0.0043 16.6 0.1 0.0095 15.4 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|20089802|ref|NP_615877.1| - 0.013 15.4 0.1 0.024 14.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|20089802|ref|NP_615877.1| - 0.024 14.7 0.2 0.1 12.7 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator Sigma70_r3 PF04539.11 gi|20089802|ref|NP_615877.1| - 0.047 13.5 0.2 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_36 PF13730.1 gi|20089802|ref|NP_615877.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|20089802|ref|NP_615877.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RPA_C PF08784.6 gi|20089802|ref|NP_615877.1| - 0.095 13.1 0.1 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_IclR PF09339.5 gi|20089802|ref|NP_615877.1| - 0.15 11.6 0.1 0.3 10.6 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|20089803|ref|NP_615878.1| - 8.3e-61 205.9 0.0 1e-60 205.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|20089803|ref|NP_615878.1| - 7.9e-12 44.8 0.7 1.2e-11 44.3 0.5 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|20089803|ref|NP_615878.1| - 6.7e-07 28.3 0.0 9.6e-07 27.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|20089803|ref|NP_615878.1| - 0.00017 20.8 0.0 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|20089803|ref|NP_615878.1| - 0.0056 15.0 0.1 0.0084 14.4 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|20089803|ref|NP_615878.1| - 0.023 13.2 0.0 0.035 12.6 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Alliinase_C PF04864.8 gi|20089803|ref|NP_615878.1| - 0.042 12.5 0.0 0.24 10.0 0.0 1.9 2 0 0 2 2 2 0 Allinase TrmB PF01978.14 gi|20089804|ref|NP_615879.1| - 3.9e-19 68.1 0.1 6.2e-19 67.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|20089804|ref|NP_615879.1| - 3.3e-05 23.3 0.4 4.4e-05 22.9 0.3 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.7 gi|20089804|ref|NP_615879.1| - 0.00017 21.1 0.0 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|20089804|ref|NP_615879.1| - 0.0032 17.1 0.0 0.0068 16.0 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|20089804|ref|NP_615879.1| - 0.0035 17.0 0.0 0.0092 15.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|20089804|ref|NP_615879.1| - 0.0035 16.8 0.0 0.0057 16.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Pox_F11 PF04943.7 gi|20089804|ref|NP_615879.1| - 0.0047 15.8 0.3 0.0047 15.8 0.2 1.1 1 0 0 1 1 1 1 Poxvirus F11 protein HTH_5 PF01022.15 gi|20089804|ref|NP_615879.1| - 0.015 14.9 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20089804|ref|NP_615879.1| - 0.031 14.6 0.0 0.21 11.9 0.0 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain PvlArgDC PF01862.11 gi|20089804|ref|NP_615879.1| - 0.042 13.4 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Clathrin_lg_ch PF01086.12 gi|20089804|ref|NP_615879.1| - 0.089 12.7 0.2 0.12 12.3 0.2 1.1 1 0 0 1 1 1 0 Clathrin light chain HTH_24 PF13412.1 gi|20089804|ref|NP_615879.1| - 0.13 11.7 0.1 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|20089804|ref|NP_615879.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MAP1B_neuraxin PF00414.12 gi|20089804|ref|NP_615879.1| - 0.75 9.2 4.0 1.7 8.0 2.8 1.6 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat EamA PF00892.15 gi|20089807|ref|NP_615882.1| - 1.3e-12 47.8 42.0 1.9e-08 34.3 9.0 3.4 2 2 2 4 4 4 2 EamA-like transporter family EmrE PF13536.1 gi|20089807|ref|NP_615882.1| - 4.3e-11 42.9 11.0 4.3e-11 42.9 7.6 2.9 2 1 0 2 2 2 1 Multidrug resistance efflux transporter DUF1440 PF07274.7 gi|20089807|ref|NP_615882.1| - 5.4 7.0 7.6 1.5 8.8 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1440) 2TM PF13239.1 gi|20089808|ref|NP_615883.1| - 0.069 13.2 0.1 0.08 13.0 0.1 1.3 1 0 0 1 1 1 0 2TM domain FixP_N PF14715.1 gi|20089808|ref|NP_615883.1| - 0.094 12.1 1.5 0.13 11.6 1.0 1.3 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP B12-binding PF02310.14 gi|20089809|ref|NP_615884.1| - 9.3e-23 80.3 1.3 1.3e-22 79.9 0.4 1.6 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|20089809|ref|NP_615884.1| - 3.9e-18 65.2 1.2 8.9e-18 64.0 0.4 1.9 2 0 0 2 2 2 1 B12 binding domain MTTB PF06253.6 gi|20089810|ref|NP_615885.1| - 7.8e-91 304.3 0.0 1e-90 303.9 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) Dimeth_Pyl PF09505.5 gi|20089811|ref|NP_615886.1| - 0 1074.8 9.8 0 1074.6 6.8 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) XFP_C PF09363.5 gi|20089811|ref|NP_615886.1| - 0.0085 15.5 0.1 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 XFP C-terminal domain B12-binding PF02310.14 gi|20089812|ref|NP_615887.1| - 5.2e-27 94.1 0.5 9e-27 93.3 0.4 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20089812|ref|NP_615887.1| - 1.5e-18 66.5 0.6 3e-18 65.6 0.4 1.5 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.6 gi|20089812|ref|NP_615887.1| - 0.038 12.4 0.1 0.048 12.1 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Ank_2 PF12796.2 gi|20089812|ref|NP_615887.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Ankyrin repeats (3 copies) UPF0051 PF01458.12 gi|20089814|ref|NP_615889.1| - 7.5e-47 159.6 0.0 9.5e-47 159.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|20089815|ref|NP_615890.1| - 2.6e-25 89.3 0.0 3.3e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089815|ref|NP_615890.1| - 3.3e-13 50.2 0.3 2.2e-06 27.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20089815|ref|NP_615890.1| - 3.5e-11 42.7 0.0 5.8e-07 28.9 0.0 2.0 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|20089815|ref|NP_615890.1| - 0.0012 17.4 0.0 0.21 10.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|20089815|ref|NP_615890.1| - 0.0075 15.7 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20089815|ref|NP_615890.1| - 0.011 15.8 0.2 0.032 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|20089815|ref|NP_615890.1| - 0.016 15.5 0.4 0.032 14.5 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|20089815|ref|NP_615890.1| - 0.018 14.9 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|20089815|ref|NP_615890.1| - 0.061 14.1 0.4 0.1 13.4 0.3 1.8 1 1 0 1 1 1 0 AAA domain EF-hand_8 PF13833.1 gi|20089815|ref|NP_615890.1| - 0.066 12.8 0.1 1.9 8.1 0.0 2.5 3 0 0 3 3 3 0 EF-hand domain pair AAA_25 PF13481.1 gi|20089815|ref|NP_615890.1| - 0.14 11.5 0.2 0.25 10.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTP_transf_3 PF12804.2 gi|20089816|ref|NP_615891.1| - 2.9e-16 59.9 0.0 3.6e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|20089816|ref|NP_615891.1| - 1.7e-08 34.2 0.0 2.5e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|20089816|ref|NP_615891.1| - 3.2e-08 33.4 0.0 1.3e-07 31.4 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|20089816|ref|NP_615891.1| - 0.0047 16.2 0.0 0.0057 15.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.11 gi|20089816|ref|NP_615891.1| - 0.0053 15.7 0.2 0.0075 15.2 0.2 1.5 1 1 0 1 1 1 1 Guanylyl transferase CofC like DUF2064 PF09837.4 gi|20089816|ref|NP_615891.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) CobS PF02654.10 gi|20089817|ref|NP_615892.1| - 1.2e-50 172.2 7.8 2.4e-50 171.3 5.4 1.4 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF2613 PF11021.3 gi|20089817|ref|NP_615892.1| - 0.067 12.9 0.1 0.23 11.2 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) PgpA PF04608.8 gi|20089818|ref|NP_615893.1| - 1.3e-09 38.0 0.0 1.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobD_Cbib PF03186.8 gi|20089819|ref|NP_615894.1| - 8.9e-97 323.7 0.1 1e-96 323.5 0.1 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Aminotran_1_2 PF00155.16 gi|20089820|ref|NP_615895.1| - 3.6e-45 154.4 0.0 4.4e-45 154.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|20089820|ref|NP_615895.1| - 4.2e-32 109.6 6.9 9e-32 108.6 4.8 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_5 PF00266.14 gi|20089820|ref|NP_615895.1| - 0.0089 14.7 0.0 0.048 12.3 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V DUF2521 PF10730.4 gi|20089820|ref|NP_615895.1| - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2521) Cys_Met_Meta_PP PF01053.15 gi|20089820|ref|NP_615895.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|20089820|ref|NP_615895.1| - 0.15 11.1 0.0 0.34 10.0 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase tRNA-synt_His PF13393.1 gi|20089821|ref|NP_615896.1| - 1e-60 205.4 0.0 1.4e-60 205.0 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|20089821|ref|NP_615896.1| - 1.6e-23 83.2 0.0 2.6e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|20089821|ref|NP_615896.1| - 2.2e-14 53.1 0.1 3.6e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|20089821|ref|NP_615896.1| - 4.2e-05 22.4 0.8 0.35 9.5 0.3 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|20089821|ref|NP_615896.1| - 0.036 13.2 0.0 0.17 11.0 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) DDE_Tnp_1_6 PF13751.1 gi|20089822|ref|NP_615897.1| - 1.8e-28 99.0 6.4 3e-28 98.3 3.7 2.1 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20089822|ref|NP_615897.1| - 2e-19 70.0 0.5 3.9e-19 69.0 0.3 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20089822|ref|NP_615897.1| - 1.1e-17 63.6 0.0 3.8e-17 61.9 0.0 2.0 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|20089822|ref|NP_615897.1| - 0.0043 17.2 0.1 0.15 12.2 0.0 2.8 2 0 0 2 2 2 1 Transposase DDE domain AhpC-TSA PF00578.16 gi|20089822|ref|NP_615897.1| - 0.021 14.5 0.4 0.053 13.2 0.3 1.6 1 0 0 1 1 1 0 AhpC/TSA family Ribosomal_S13_N PF08069.7 gi|20089827|ref|NP_615902.1| - 2.2e-26 91.4 0.2 5.6e-26 90.1 0.2 1.7 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|20089827|ref|NP_615902.1| - 1.9e-20 72.3 0.4 2.5e-20 71.9 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 ABC_tran PF00005.22 gi|20089828|ref|NP_615903.1| - 2.5e-30 105.5 0.0 3.2e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089828|ref|NP_615903.1| - 3.9e-12 46.7 0.5 9.2e-05 22.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20089828|ref|NP_615903.1| - 1.2e-06 27.8 0.2 0.00039 19.5 0.0 2.0 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|20089828|ref|NP_615903.1| - 2.1e-05 23.9 0.0 6.6e-05 22.3 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20089828|ref|NP_615903.1| - 5.7e-05 23.1 0.0 0.00017 21.6 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|20089828|ref|NP_615903.1| - 7.5e-05 21.9 0.0 0.00011 21.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|20089828|ref|NP_615903.1| - 8.2e-05 23.0 0.0 9.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20089828|ref|NP_615903.1| - 0.00017 20.9 0.2 0.3 10.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|20089828|ref|NP_615903.1| - 0.00029 19.5 0.1 0.16 10.4 0.0 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|20089828|ref|NP_615903.1| - 0.00033 20.8 0.9 0.0044 17.1 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|20089828|ref|NP_615903.1| - 0.0013 18.6 0.1 0.023 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|20089828|ref|NP_615903.1| - 0.0017 18.5 0.1 0.021 15.0 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|20089828|ref|NP_615903.1| - 0.0026 18.5 0.1 0.0049 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|20089828|ref|NP_615903.1| - 0.0037 17.0 0.0 0.0065 16.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|20089828|ref|NP_615903.1| - 0.0087 14.9 0.1 0.028 13.2 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain AAA_25 PF13481.1 gi|20089828|ref|NP_615903.1| - 0.013 14.9 0.1 0.041 13.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|20089828|ref|NP_615903.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|20089828|ref|NP_615903.1| - 0.013 13.9 0.0 2.3 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|20089828|ref|NP_615903.1| - 0.014 15.0 0.0 0.032 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|20089828|ref|NP_615903.1| - 0.014 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|20089828|ref|NP_615903.1| - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20089828|ref|NP_615903.1| - 0.018 15.3 0.5 0.034 14.4 0.4 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|20089828|ref|NP_615903.1| - 0.018 14.7 0.1 0.042 13.5 0.1 1.8 1 1 0 1 1 1 0 NTPase AAA_19 PF13245.1 gi|20089828|ref|NP_615903.1| - 0.019 14.7 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|20089828|ref|NP_615903.1| - 0.022 14.6 0.0 0.04 13.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.17 gi|20089828|ref|NP_615903.1| - 0.033 13.6 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|20089828|ref|NP_615903.1| - 0.059 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|20089828|ref|NP_615903.1| - 0.065 13.1 0.1 0.53 10.2 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|20089828|ref|NP_615903.1| - 0.071 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|20089828|ref|NP_615903.1| - 0.079 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|20089828|ref|NP_615903.1| - 0.08 12.3 0.0 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|20089828|ref|NP_615903.1| - 0.12 11.8 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|20089828|ref|NP_615903.1| - 0.15 11.7 0.2 1.3 8.7 0.0 2.3 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) FecCD PF01032.13 gi|20089829|ref|NP_615904.1| - 3.3e-90 302.0 34.2 4e-90 301.8 23.7 1.0 1 0 0 1 1 1 1 FecCD transport family BPD_transp_1 PF00528.17 gi|20089829|ref|NP_615904.1| - 0.0054 16.2 3.0 0.0054 16.2 2.1 4.5 1 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Peripla_BP_2 PF01497.13 gi|20089830|ref|NP_615905.1| - 4e-25 88.3 0.3 7e-25 87.5 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein Tubulin PF00091.20 gi|20089831|ref|NP_615906.1| - 3.2e-31 108.8 0.5 5.7e-31 108.0 0.3 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|20089831|ref|NP_615906.1| - 0.032 13.1 0.3 0.11 11.4 0.1 2.1 1 1 0 1 1 1 0 Tubulin like DUF11 PF01345.13 gi|20089832|ref|NP_615907.1| - 2.3e-15 56.4 6.2 2.2e-09 37.2 0.0 3.5 3 1 0 3 3 3 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|20089832|ref|NP_615907.1| - 1.5e-11 43.8 7.7 8e-07 28.3 2.3 2.7 1 1 0 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|20089832|ref|NP_615907.1| - 3.8e-06 26.8 14.4 0.00067 19.6 0.7 3.8 1 1 3 4 4 4 2 CARDB ChitinaseA_N PF08329.5 gi|20089832|ref|NP_615907.1| - 9.4e-05 22.1 0.1 0.0011 18.7 0.0 2.5 2 0 0 2 2 2 1 Chitinase A, N-terminal domain NPCBM_assoc PF10633.4 gi|20089832|ref|NP_615907.1| - 0.00014 21.8 0.4 0.52 10.4 0.0 3.4 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|20089832|ref|NP_615907.1| - 0.0057 16.6 0.3 3.5 7.7 0.0 3.0 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain Trigger_N PF05697.8 gi|20089832|ref|NP_615907.1| - 0.026 14.3 0.1 0.84 9.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) QRPTase_C PF01729.14 gi|20089833|ref|NP_615908.1| - 1.1e-59 200.8 1.2 1.3e-59 200.5 0.9 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|20089833|ref|NP_615908.1| - 7e-23 80.2 0.0 1.4e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|20089833|ref|NP_615908.1| - 0.01 14.9 0.0 0.022 13.8 0.0 1.6 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family IGPS PF00218.16 gi|20089833|ref|NP_615908.1| - 0.041 12.9 0.4 0.069 12.1 0.3 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Biotin_lipoyl_2 PF13533.1 gi|20089833|ref|NP_615908.1| - 0.046 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 Biotin-lipoyl like TMP-TENI PF02581.12 gi|20089833|ref|NP_615908.1| - 0.087 11.9 0.2 0.17 11.0 0.1 1.6 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI PTPS PF01242.14 gi|20089834|ref|NP_615909.1| - 1.1e-37 128.4 0.2 1.2e-37 128.3 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Disaggr_repeat PF06848.6 gi|20089835|ref|NP_615910.1| - 1.9e-296 972.5 31.2 5e-99 329.1 2.9 3.3 3 0 0 3 3 3 3 Disaggregatase related repeat S-layer PF07752.6 gi|20089835|ref|NP_615910.1| - 1.7e-94 315.8 25.2 4.3e-55 186.7 2.4 3.5 1 1 1 3 3 3 3 S-layer protein PKD PF00801.15 gi|20089835|ref|NP_615910.1| - 2e-17 62.6 10.1 2e-17 62.6 7.0 3.7 3 0 0 3 3 3 1 PKD domain TGFb_propeptide PF00688.13 gi|20089835|ref|NP_615910.1| - 4.1e-14 52.4 0.0 0.12 11.6 0.0 6.1 6 0 0 6 6 6 4 TGF-beta propeptide DUF3466 PF11949.3 gi|20089835|ref|NP_615910.1| - 8.2e-08 31.2 29.3 0.00097 17.8 0.1 7.0 5 2 1 6 6 6 5 Protein of unknown function (DUF3466) Rapsyn_N PF10579.4 gi|20089835|ref|NP_615910.1| - 0.0053 16.5 0.0 63 3.4 0.0 4.5 4 0 0 4 4 4 0 Rapsyn N-terminal myristoylation and linker region DUF3203 PF11462.3 gi|20089835|ref|NP_615910.1| - 0.09 12.7 0.0 0.34 10.8 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) CUE PF02845.11 gi|20089835|ref|NP_615910.1| - 0.16 11.5 0.1 0.82 9.2 0.0 2.1 2 0 0 2 2 2 0 CUE domain Big_3_4 PF13754.1 gi|20089835|ref|NP_615910.1| - 1.2 9.4 21.4 1.5 9.2 9.4 4.1 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) THDPS_M PF14789.1 gi|20089835|ref|NP_615910.1| - 3.4 7.7 11.6 30 4.6 0.2 3.6 3 0 0 3 3 3 0 Tetrahydrodipicolinate N-succinyltransferase middle DUF108 PF01958.13 gi|20089836|ref|NP_615911.1| - 9.6e-39 131.5 0.2 1.5e-38 130.9 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|20089836|ref|NP_615911.1| - 1e-26 93.6 0.0 2.2e-26 92.5 0.0 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|20089836|ref|NP_615911.1| - 1.2e-06 28.7 0.0 1.9e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|20089836|ref|NP_615911.1| - 1.4e-06 28.8 0.0 3e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|20089836|ref|NP_615911.1| - 0.015 15.7 0.1 0.034 14.5 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NadA PF02445.11 gi|20089837|ref|NP_615912.1| - 3.9e-122 406.6 3.8 4.5e-122 406.5 2.6 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein UbiA PF01040.13 gi|20089839|ref|NP_615914.1| - 7.4e-44 149.8 23.1 1.1e-43 149.3 16.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family AdoMet_Synthase PF01941.14 gi|20089840|ref|NP_615915.1| - 4.9e-165 548.8 0.2 5.7e-165 548.6 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) UPF0278 PF08745.6 gi|20089841|ref|NP_615916.1| - 4.2e-93 310.3 0.1 4.8e-93 310.1 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family zf-ribbon_3 PF13248.1 gi|20089842|ref|NP_615917.1| - 0.0087 15.2 0.8 0.67 9.2 0.3 2.7 2 0 0 2 2 2 1 zinc-ribbon domain DUF4428 PF14471.1 gi|20089842|ref|NP_615917.1| - 0.052 13.3 0.2 0.052 13.3 0.2 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4428) DZR PF12773.2 gi|20089842|ref|NP_615917.1| - 0.11 12.3 8.3 0.18 11.6 1.6 2.9 1 1 1 2 2 2 0 Double zinc ribbon FYVE PF01363.16 gi|20089842|ref|NP_615917.1| - 0.12 12.2 1.0 0.61 10.0 0.7 2.2 1 1 0 1 1 1 0 FYVE zinc finger FYVE_2 PF02318.11 gi|20089842|ref|NP_615917.1| - 0.27 11.1 2.2 6.2 6.7 0.1 2.7 3 0 0 3 3 3 0 FYVE-type zinc finger Sgf11 PF08209.6 gi|20089842|ref|NP_615917.1| - 0.32 10.3 1.6 19 4.6 0.1 2.6 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_5 PF14634.1 gi|20089842|ref|NP_615917.1| - 0.52 10.0 8.8 2.8 7.7 0.7 3.3 3 0 0 3 3 3 0 zinc-RING finger domain Nudix_N_2 PF14803.1 gi|20089842|ref|NP_615917.1| - 0.98 9.1 6.6 11 5.7 0.0 3.2 4 0 0 4 4 4 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|20089842|ref|NP_615917.1| - 1.5 8.4 13.6 4 7.0 4.2 3.0 3 1 0 3 3 3 0 zinc-ribbon domain Cript PF10235.4 gi|20089842|ref|NP_615917.1| - 1.6 9.1 4.3 18 5.7 0.0 3.0 2 1 1 3 3 3 0 Microtubule-associated protein CRIPT zf-C3HC4_3 PF13920.1 gi|20089842|ref|NP_615917.1| - 1.9 8.2 6.9 20 4.9 0.4 3.1 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-CHY PF05495.7 gi|20089842|ref|NP_615917.1| - 2.6 8.2 7.5 12 6.1 0.4 3.4 2 1 0 3 3 3 0 CHY zinc finger PhnA_Zn_Ribbon PF08274.7 gi|20089842|ref|NP_615917.1| - 2.8 7.7 7.2 5.7 6.8 0.1 3.1 2 1 1 3 3 3 0 PhnA Zinc-Ribbon LIM PF00412.17 gi|20089842|ref|NP_615917.1| - 2.8 8.0 7.6 4.5 7.4 0.0 3.4 4 0 0 4 4 4 0 LIM domain zf-dskA_traR PF01258.12 gi|20089842|ref|NP_615917.1| - 3.1 7.6 9.8 16 5.3 0.1 4.1 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger A2L_zn_ribbon PF08792.5 gi|20089842|ref|NP_615917.1| - 8.7 5.9 11.8 5.3 6.6 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain Thioredoxin PF00085.15 gi|20089843|ref|NP_615918.1| - 1.1e-21 76.4 0.0 1.2e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|20089843|ref|NP_615918.1| - 1.7e-11 44.2 0.4 3.2e-10 40.1 0.3 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|20089843|ref|NP_615918.1| - 1.7e-05 24.7 0.0 2.2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|20089843|ref|NP_615918.1| - 1.8e-05 24.4 0.0 2.8e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|20089843|ref|NP_615918.1| - 2e-05 24.2 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family DSBA PF01323.15 gi|20089843|ref|NP_615918.1| - 0.0004 20.0 1.1 0.078 12.5 0.2 2.2 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Redoxin PF08534.5 gi|20089843|ref|NP_615918.1| - 0.00042 19.8 0.0 0.00053 19.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_4 PF13462.1 gi|20089843|ref|NP_615918.1| - 0.00058 19.8 0.8 0.018 15.0 0.4 2.1 1 1 1 2 2 2 1 Thioredoxin Glutaredoxin PF00462.19 gi|20089843|ref|NP_615918.1| - 0.0024 17.8 0.2 0.004 17.1 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_8 PF13905.1 gi|20089843|ref|NP_615918.1| - 0.0024 17.9 0.0 0.0083 16.2 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin-like TraF PF13728.1 gi|20089843|ref|NP_615918.1| - 0.0057 16.1 0.0 0.0069 15.9 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein UPF0014 PF03649.8 gi|20089844|ref|NP_615919.1| - 5.6e-07 28.9 0.1 6.5e-07 28.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) DS PF01916.12 gi|20089845|ref|NP_615920.1| - 2.1e-85 286.4 0.0 2.4e-85 286.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.19 gi|20089846|ref|NP_615921.1| - 5.3e-43 147.0 0.8 6.8e-43 146.6 0.5 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|20089846|ref|NP_615921.1| - 1.9e-05 24.0 2.2 0.00092 18.5 0.2 2.5 2 1 1 3 3 3 2 PcrB family PEP_mutase PF13714.1 gi|20089846|ref|NP_615921.1| - 0.0042 16.3 0.8 0.18 10.9 0.1 2.3 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase NanE PF04131.9 gi|20089846|ref|NP_615921.1| - 0.011 14.7 1.9 1.7 7.5 0.0 2.7 3 1 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.14 gi|20089846|ref|NP_615921.1| - 0.052 12.6 0.3 0.98 8.4 0.2 2.1 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|20089846|ref|NP_615921.1| - 0.12 11.1 1.1 0.17 10.7 0.8 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase HisKA_2 PF07568.7 gi|20089847|ref|NP_615922.1| - 3.3e-30 103.7 2.1 3.3e-30 103.7 1.4 3.5 3 0 0 3 3 3 1 Histidine kinase PAS_9 PF13426.1 gi|20089847|ref|NP_615922.1| - 5.6e-20 71.6 0.0 2.4e-14 53.5 0.0 4.6 4 0 0 4 4 4 2 PAS domain PAS PF00989.19 gi|20089847|ref|NP_615922.1| - 7.1e-18 64.4 0.0 1.6e-15 56.8 0.0 3.6 3 1 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|20089847|ref|NP_615922.1| - 3.2e-14 52.1 0.0 5.6e-06 26.0 0.0 3.8 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.5 gi|20089847|ref|NP_615922.1| - 1.6e-13 50.6 0.0 8.1e-09 35.4 0.0 3.6 3 0 0 3 3 3 2 PAS fold GAF PF01590.21 gi|20089847|ref|NP_615922.1| - 4.8e-13 49.5 0.1 8.5e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|20089847|ref|NP_615922.1| - 1.8e-12 46.9 0.2 5.9e-12 45.2 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|20089847|ref|NP_615922.1| - 3.9e-09 37.1 0.4 1.4e-08 35.3 0.2 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|20089847|ref|NP_615922.1| - 2.3e-06 27.5 0.0 1.5e-05 25.0 0.0 2.5 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|20089847|ref|NP_615922.1| - 2.5e-05 24.3 0.0 5.7e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|20089847|ref|NP_615922.1| - 0.00042 20.1 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20089847|ref|NP_615922.1| - 0.0074 16.7 0.6 0.042 14.2 0.1 2.6 2 0 0 2 2 2 1 HWE histidine kinase FUR PF01475.14 gi|20089848|ref|NP_615923.1| - 3.1e-28 98.1 0.0 3.7e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_11 PF08279.7 gi|20089848|ref|NP_615923.1| - 0.012 15.2 0.1 0.34 10.5 0.0 2.3 2 0 0 2 2 2 0 HTH domain SEA PF01390.15 gi|20089848|ref|NP_615923.1| - 0.043 13.4 0.1 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 SEA domain Zn_clus PF00172.13 gi|20089848|ref|NP_615923.1| - 6.4 6.7 10.3 16 5.4 3.9 2.2 2 0 0 2 2 2 0 Fungal Zn(2)-Cys(6) binuclear cluster domain peroxidase PF00141.18 gi|20089849|ref|NP_615924.1| - 8.6e-89 296.9 0.0 1.8e-46 158.5 0.0 2.2 2 0 0 2 2 2 2 Peroxidase MULE PF10551.4 gi|20089850|ref|NP_615925.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20089850|ref|NP_615925.1| - 0.022 13.2 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20089850|ref|NP_615925.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20089850|ref|NP_615925.1| - 0.04 13.4 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20089850|ref|NP_615925.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20089850|ref|NP_615925.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20089850|ref|NP_615925.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20089850|ref|NP_615925.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger IMS_C PF11799.3 gi|20089851|ref|NP_615926.1| - 0.087 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain NiFeSe_Hases PF00374.14 gi|20089852|ref|NP_615927.1| - 3.6e-37 128.3 9.8 3.1e-15 55.9 0.1 4.2 1 1 2 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.13 gi|20089853|ref|NP_615928.1| - 1e-33 115.6 0.0 1.2e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.17 gi|20089854|ref|NP_615929.1| - 2.2e-28 98.5 0.1 2.2e-28 98.5 0.1 2.1 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|20089854|ref|NP_615929.1| - 1.1e-12 47.0 15.8 5.9e-08 31.9 2.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089854|ref|NP_615929.1| - 1.3e-08 34.4 10.5 1.4e-08 34.4 5.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089854|ref|NP_615929.1| - 1.4e-08 34.8 7.8 1.4e-08 34.8 5.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089854|ref|NP_615929.1| - 7.8e-08 32.5 9.1 7.8e-08 32.5 6.3 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089854|ref|NP_615929.1| - 2.1e-07 30.4 17.4 0.00035 20.3 2.3 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089854|ref|NP_615929.1| - 2.6e-07 30.4 7.6 0.0017 18.1 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089854|ref|NP_615929.1| - 1.5e-06 27.8 17.8 2.8e-05 23.7 1.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089854|ref|NP_615929.1| - 2.6e-06 28.0 7.2 0.0014 19.3 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20089854|ref|NP_615929.1| - 6.3e-06 26.0 16.7 0.0015 18.6 1.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20089854|ref|NP_615929.1| - 4.2e-05 23.4 21.5 0.00019 21.4 8.3 3.1 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089854|ref|NP_615929.1| - 0.00083 19.6 15.2 0.042 14.2 1.2 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089854|ref|NP_615929.1| - 0.0028 18.0 17.7 0.03 14.7 2.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20089854|ref|NP_615929.1| - 0.044 14.3 0.6 0.044 14.3 0.4 3.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20089854|ref|NP_615929.1| - 0.41 11.3 24.3 0.32 11.6 4.9 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20089854|ref|NP_615929.1| - 0.59 10.5 18.5 0.21 11.9 1.0 3.2 3 1 1 4 4 3 0 4Fe-4S single cluster domain FrhB_FdhB_C PF04432.8 gi|20089855|ref|NP_615930.1| - 2.4e-44 150.5 0.0 5e-44 149.5 0.0 1.4 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|20089855|ref|NP_615930.1| - 1.7e-31 107.9 0.0 3.3e-31 106.9 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term FlpD PF02662.11 gi|20089855|ref|NP_615930.1| - 0.04 13.5 0.1 0.43 10.2 0.0 2.2 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit ATE_N PF04376.8 gi|20089857|ref|NP_615932.1| - 0.0046 16.7 0.1 0.0093 15.7 0.0 1.5 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, N terminus Plasmid_stabil PF05016.9 gi|20089858|ref|NP_615933.1| - 1.2e-06 28.8 0.1 1.4e-06 28.5 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein HLH PF00010.21 gi|20089858|ref|NP_615933.1| - 0.0058 16.2 0.0 0.0064 16.1 0.0 1.3 1 1 0 1 1 1 1 Helix-loop-helix DNA-binding domain Gp49 PF05973.9 gi|20089858|ref|NP_615933.1| - 0.0067 16.4 0.1 0.0075 16.2 0.1 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) DUF2136 PF09907.4 gi|20089858|ref|NP_615933.1| - 0.025 14.6 0.1 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2136) tify PF06200.9 gi|20089858|ref|NP_615933.1| - 0.12 11.6 0.1 1.2 8.4 0.0 2.0 2 0 0 2 2 2 0 tify domain PIN PF01850.16 gi|20089859|ref|NP_615934.1| - 2.5e-15 56.8 0.3 2.9e-15 56.6 0.2 1.0 1 0 0 1 1 1 1 PIN domain Bac_export_2 PF01312.14 gi|20089860|ref|NP_615935.1| - 1.8 7.3 5.5 3 6.6 0.4 1.9 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family DDE_Tnp_1 PF01609.16 gi|20089861|ref|NP_615936.1| - 5.8e-06 25.9 1.0 8.2e-06 25.5 0.7 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF3931 PF13082.1 gi|20089861|ref|NP_615936.1| - 0.0072 16.1 0.8 0.041 13.7 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3931) HTH_12 PF08461.5 gi|20089861|ref|NP_615936.1| - 0.012 15.2 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rifin_STEVOR PF02009.11 gi|20089862|ref|NP_615937.1| - 0.012 15.3 0.1 0.012 15.3 0.1 1.5 2 0 0 2 2 2 0 Rifin/stevor family TMEM154 PF15102.1 gi|20089862|ref|NP_615937.1| - 0.026 14.2 1.0 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 TMEM154 protein family Herpes_gE PF02480.11 gi|20089862|ref|NP_615937.1| - 0.044 12.0 0.1 0.056 11.6 0.1 1.1 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E IncA PF04156.9 gi|20089862|ref|NP_615937.1| - 0.096 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 IncA protein DUF4282 PF14110.1 gi|20089862|ref|NP_615937.1| - 0.35 11.0 8.7 0.04 14.1 2.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) UPF0560 PF10577.4 gi|20089862|ref|NP_615937.1| - 0.61 8.2 4.7 0.088 11.0 0.4 1.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0560 SKG6 PF08693.5 gi|20089862|ref|NP_615937.1| - 2.4 7.5 7.7 0.31 10.3 2.1 2.0 2 0 0 2 2 2 0 Transmembrane alpha-helix domain zf-CDGSH PF09360.5 gi|20089863|ref|NP_615938.1| - 2.4e-34 116.8 3.2 2.8e-17 62.2 0.0 2.6 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|20089863|ref|NP_615938.1| - 1.2e-13 50.6 0.1 3.6e-13 49.1 0.0 1.9 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Peptidase_M50 PF02163.17 gi|20089864|ref|NP_615939.1| - 6.9e-12 44.7 13.8 1.9e-08 33.5 3.2 2.7 1 1 1 2 2 2 2 Peptidase family M50 UPF0233 PF06781.7 gi|20089864|ref|NP_615939.1| - 0.025 14.2 5.3 0.59 9.8 1.0 2.6 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0233) CxxCxxCC PF03692.10 gi|20089865|ref|NP_615940.1| - 8e-09 35.8 6.0 1.1e-08 35.3 4.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain GyrI-like PF06445.10 gi|20089866|ref|NP_615941.1| - 2e-22 79.9 0.2 2.8e-22 79.4 0.1 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain MerR_1 PF13411.1 gi|20089866|ref|NP_615941.1| - 1.7e-11 43.6 0.0 3e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.18 gi|20089866|ref|NP_615941.1| - 1.9e-07 30.5 0.2 3.3e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 MerR family regulatory protein Cass2 PF14526.1 gi|20089866|ref|NP_615941.1| - 3.9e-06 26.9 0.1 8.9e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 Integron-associated effector binding protein MerR-DNA-bind PF09278.6 gi|20089866|ref|NP_615941.1| - 0.0004 20.7 0.1 0.00079 19.7 0.1 1.5 1 0 0 1 1 1 1 MerR, DNA binding Polysacc_deac_1 PF01522.16 gi|20089867|ref|NP_615942.1| - 8.5e-29 99.7 0.0 1.3e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|20089867|ref|NP_615942.1| - 0.0011 17.9 0.0 0.002 17.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 SnoaL_2 PF12680.2 gi|20089868|ref|NP_615943.1| - 7.7e-08 32.6 0.0 9.4e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF302 PF03625.9 gi|20089869|ref|NP_615944.1| - 9.1e-11 41.1 0.0 1.4e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 Abhydrolase_6 PF12697.2 gi|20089870|ref|NP_615945.1| - 5.9e-39 134.2 0.0 6.7e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20089870|ref|NP_615945.1| - 3.6e-32 111.7 0.0 4.4e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20089870|ref|NP_615945.1| - 1.2e-26 93.1 0.0 2.3e-17 63.0 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|20089870|ref|NP_615945.1| - 2.2e-11 43.4 0.1 4e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|20089870|ref|NP_615945.1| - 4.7e-09 35.7 0.2 1.2e-05 24.6 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DUF915 PF06028.6 gi|20089870|ref|NP_615945.1| - 0.00025 20.2 0.0 0.00049 19.2 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF915) DLH PF01738.13 gi|20089870|ref|NP_615945.1| - 0.00027 20.3 0.0 0.00078 18.7 0.0 1.7 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|20089870|ref|NP_615945.1| - 0.0006 19.3 0.0 0.0013 18.1 0.0 1.5 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Ser_hydrolase PF06821.8 gi|20089870|ref|NP_615945.1| - 0.0022 17.6 0.0 0.041 13.4 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase Abhydrolase_4 PF08386.5 gi|20089870|ref|NP_615945.1| - 0.012 15.5 0.0 0.029 14.2 0.0 1.6 2 0 0 2 2 2 0 TAP-like protein Ndr PF03096.9 gi|20089870|ref|NP_615945.1| - 0.018 13.5 0.0 0.37 9.2 0.0 2.0 2 0 0 2 2 2 0 Ndr family Peptidase_S15 PF02129.13 gi|20089870|ref|NP_615945.1| - 0.025 14.0 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) DUF1749 PF08538.5 gi|20089870|ref|NP_615945.1| - 0.06 12.2 0.0 0.31 9.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) PhoPQ_related PF10142.4 gi|20089870|ref|NP_615945.1| - 0.11 10.9 0.0 0.22 9.9 0.0 1.5 2 0 0 2 2 2 0 PhoPQ-activated pathogenicity-related protein Abhydrolase_6 PF12697.2 gi|20089871|ref|NP_615946.1| - 7.1e-12 45.7 0.0 8.3e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20089871|ref|NP_615946.1| - 4.8e-05 23.0 0.0 5.3e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold AAA_21 PF13304.1 gi|20089872|ref|NP_615947.1| - 6e-19 69.0 5.0 6.7e-17 62.3 3.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20089872|ref|NP_615947.1| - 1.9e-18 66.7 0.1 5.4e-09 35.6 0.1 2.3 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|20089872|ref|NP_615947.1| - 1.2e-12 47.5 0.2 4.8e-07 29.2 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20089872|ref|NP_615947.1| - 5.8e-10 39.8 1.8 7.7e-10 39.4 1.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20089872|ref|NP_615947.1| - 1.7e-06 27.4 0.1 3e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|20089872|ref|NP_615947.1| - 2.4e-05 24.6 0.2 8.3e-05 22.9 0.1 1.9 1 1 0 1 1 1 1 ABC transporter AAA_13 PF13166.1 gi|20089872|ref|NP_615947.1| - 0.0007 18.1 0.5 0.011 14.2 0.2 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20089872|ref|NP_615947.1| - 0.0012 19.0 0.0 0.0067 16.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|20089872|ref|NP_615947.1| - 0.0022 16.6 0.0 0.0032 16.1 0.0 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class DUF2075 PF09848.4 gi|20089872|ref|NP_615947.1| - 0.0024 16.9 0.0 0.0028 16.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|20089872|ref|NP_615947.1| - 0.0061 16.2 0.0 0.019 14.5 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.2 gi|20089872|ref|NP_615947.1| - 0.0091 15.4 0.1 0.08 12.3 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|20089872|ref|NP_615947.1| - 0.017 14.6 0.0 0.073 12.5 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF258 PF03193.11 gi|20089872|ref|NP_615947.1| - 0.02 14.0 0.1 0.067 12.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|20089872|ref|NP_615947.1| - 0.025 14.3 0.0 0.059 13.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|20089872|ref|NP_615947.1| - 0.031 13.6 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|20089872|ref|NP_615947.1| - 0.046 12.8 0.0 0.096 11.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|20089872|ref|NP_615947.1| - 0.055 14.2 0.1 0.1 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.3 gi|20089872|ref|NP_615947.1| - 0.07 12.2 0.0 0.17 10.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) ANF_receptor PF01094.23 gi|20089872|ref|NP_615947.1| - 0.075 11.8 0.0 9.1 4.9 0.0 2.1 2 0 0 2 2 2 0 Receptor family ligand binding region AAA_16 PF13191.1 gi|20089872|ref|NP_615947.1| - 0.08 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|20089872|ref|NP_615947.1| - 0.1 12.4 0.1 1 9.2 0.0 2.4 3 0 0 3 3 3 0 AAA domain Methyltransf_11 PF08241.7 gi|20089873|ref|NP_615948.1| - 1.2e-18 67.3 0.1 1.8e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089873|ref|NP_615948.1| - 2.8e-18 65.9 0.2 3.6e-18 65.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089873|ref|NP_615948.1| - 2.9e-16 59.6 0.0 3.6e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089873|ref|NP_615948.1| - 1.4e-12 48.1 0.0 2.2e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089873|ref|NP_615948.1| - 4.4e-12 46.3 0.1 8.3e-12 45.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089873|ref|NP_615948.1| - 4.3e-09 36.6 0.1 7.2e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|20089873|ref|NP_615948.1| - 5.1e-08 32.3 0.1 7.4e-08 31.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|20089873|ref|NP_615948.1| - 3.2e-07 29.8 0.0 4.7e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|20089873|ref|NP_615948.1| - 2.1e-06 27.0 0.1 2.7e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|20089873|ref|NP_615948.1| - 4.6e-06 25.9 0.0 7e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|20089873|ref|NP_615948.1| - 1.1e-05 24.3 0.0 1.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.9 gi|20089873|ref|NP_615948.1| - 0.00011 21.4 0.3 0.00015 21.0 0.2 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|20089873|ref|NP_615948.1| - 0.00023 20.6 0.0 0.00038 19.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|20089873|ref|NP_615948.1| - 0.00061 19.8 0.0 0.0012 18.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20089873|ref|NP_615948.1| - 0.0022 17.5 0.0 0.0035 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|20089873|ref|NP_615948.1| - 0.0046 16.3 0.1 0.009 15.4 0.1 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Pox_MCEL PF03291.11 gi|20089873|ref|NP_615948.1| - 0.0064 15.4 1.5 0.15 10.8 1.0 2.2 1 1 0 1 1 1 1 mRNA capping enzyme FtsJ PF01728.14 gi|20089873|ref|NP_615948.1| - 0.007 16.3 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_15 PF09445.5 gi|20089873|ref|NP_615948.1| - 0.022 14.3 0.7 0.031 13.8 0.5 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DREV PF05219.7 gi|20089873|ref|NP_615948.1| - 0.037 12.9 0.1 0.094 11.5 0.1 1.6 1 1 0 1 1 1 0 DREV methyltransferase NNMT_PNMT_TEMT PF01234.12 gi|20089873|ref|NP_615948.1| - 0.037 12.9 0.0 0.48 9.3 0.0 2.3 3 0 0 3 3 3 0 NNMT/PNMT/TEMT family TPMT PF05724.6 gi|20089873|ref|NP_615948.1| - 0.078 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_31 PF13847.1 gi|20089875|ref|NP_615950.1| - 2.8e-31 108.1 0.3 5e-31 107.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089875|ref|NP_615950.1| - 1.1e-12 48.3 0.0 1.9e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20089875|ref|NP_615950.1| - 2.6e-12 47.3 0.0 4.1e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089875|ref|NP_615950.1| - 2.7e-12 47.0 0.0 4.6e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089875|ref|NP_615950.1| - 1.6e-10 40.9 0.0 3.7e-10 39.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089875|ref|NP_615950.1| - 8.4e-09 35.7 0.0 1.5e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20089875|ref|NP_615950.1| - 8.1e-07 28.3 0.0 1.2e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|20089875|ref|NP_615950.1| - 8.3e-06 25.5 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089875|ref|NP_615950.1| - 5.3e-05 22.6 0.0 8.6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20089875|ref|NP_615950.1| - 0.00014 21.4 0.0 0.00058 19.4 0.0 2.0 2 1 1 3 3 3 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|20089875|ref|NP_615950.1| - 0.00022 21.2 0.0 0.00033 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|20089875|ref|NP_615950.1| - 0.0013 17.5 0.0 0.0019 16.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) FmrO PF07091.6 gi|20089875|ref|NP_615950.1| - 0.0014 17.6 0.0 0.0025 16.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) GCD14 PF08704.5 gi|20089875|ref|NP_615950.1| - 0.0023 17.4 0.0 0.0042 16.6 0.0 1.4 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit TehB PF03848.9 gi|20089875|ref|NP_615950.1| - 0.0056 15.8 0.0 0.011 14.8 0.0 1.5 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|20089875|ref|NP_615950.1| - 0.035 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|20089875|ref|NP_615950.1| - 0.066 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF2540 PF10802.3 gi|20089875|ref|NP_615950.1| - 0.084 12.5 0.0 0.26 11.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) PEMT PF04191.8 gi|20089876|ref|NP_615951.1| - 1.3e-15 57.3 0.4 1.3e-15 57.3 0.3 1.9 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|20089876|ref|NP_615951.1| - 1e-12 48.0 0.3 2.4e-12 46.8 0.1 1.7 2 0 0 2 2 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.7 gi|20089876|ref|NP_615951.1| - 1.4e-06 27.8 0.9 2.2e-06 27.1 0.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) EcsB PF05975.7 gi|20089876|ref|NP_615951.1| - 0.00032 19.2 0.9 0.00032 19.2 0.6 1.8 1 1 1 2 2 2 1 Bacterial ABC transporter protein EcsB Steroid_dh PF02544.11 gi|20089876|ref|NP_615951.1| - 0.0028 17.4 2.4 0.0028 17.4 1.1 1.5 1 1 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF2207 PF09972.4 gi|20089876|ref|NP_615951.1| - 0.026 13.1 0.2 0.026 13.1 0.1 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) ESCRT-II PF05871.7 gi|20089876|ref|NP_615951.1| - 0.092 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 ESCRT-II complex subunit ERG4_ERG24 PF01222.12 gi|20089876|ref|NP_615951.1| - 0.093 11.2 3.9 0.069 11.6 0.4 2.0 1 1 1 2 2 2 0 Ergosterol biosynthesis ERG4/ERG24 family Claudin_2 PF13903.1 gi|20089876|ref|NP_615951.1| - 0.094 12.4 5.4 0.089 12.4 1.6 2.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF1345 PF07077.6 gi|20089876|ref|NP_615951.1| - 0.11 11.9 2.5 0.17 11.3 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) DUF1772 PF08592.6 gi|20089876|ref|NP_615951.1| - 0.12 12.0 3.1 0.25 11.0 1.3 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF1772) RseC_MucC PF04246.7 gi|20089876|ref|NP_615951.1| - 0.23 11.0 1.1 1.9 8.0 0.1 2.4 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC SecY PF00344.15 gi|20089876|ref|NP_615951.1| - 0.3 9.9 5.4 0.64 8.8 3.7 1.5 1 1 0 1 1 1 0 SecY translocase DUF1469 PF07332.6 gi|20089876|ref|NP_615951.1| - 3.9 7.2 9.5 0.2 11.3 2.4 1.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1469) Lyase_1 PF00206.15 gi|20089877|ref|NP_615952.1| - 3.9e-101 338.3 0.0 4.8e-101 338.0 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|20089877|ref|NP_615952.1| - 2.7e-21 75.3 0.0 7e-21 74.0 0.0 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus Malic_M PF03949.10 gi|20089878|ref|NP_615953.1| - 1.1e-21 77.5 0.1 1.2e-21 77.4 0.0 1.0 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain RLL PF10036.4 gi|20089878|ref|NP_615953.1| - 0.095 12.1 0.0 0.11 11.8 0.0 1.0 1 0 0 1 1 1 0 Putative carnitine deficiency-associated protein Oxidored_FMN PF00724.15 gi|20089879|ref|NP_615954.1| - 4.2e-87 292.3 0.0 4.9e-87 292.1 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family NOD PF06816.8 gi|20089880|ref|NP_615955.1| - 0.13 11.3 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 NOTCH protein FUR PF01475.14 gi|20089881|ref|NP_615956.1| - 5.8e-31 106.9 0.2 5.8e-31 106.9 0.1 1.3 1 1 1 2 2 2 1 Ferric uptake regulator family Penicillinase_R PF03965.11 gi|20089881|ref|NP_615956.1| - 0.00031 20.8 0.0 0.00041 20.4 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor PadR PF03551.9 gi|20089881|ref|NP_615956.1| - 0.0024 17.5 0.0 0.0056 16.4 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|20089881|ref|NP_615956.1| - 0.0025 17.1 0.0 0.0058 15.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20089881|ref|NP_615956.1| - 0.0077 15.8 0.0 0.081 12.6 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20089881|ref|NP_615956.1| - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|20089881|ref|NP_615956.1| - 0.02 14.7 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|20089881|ref|NP_615956.1| - 0.037 13.6 0.0 0.21 11.1 0.0 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|20089881|ref|NP_615956.1| - 0.037 13.6 0.0 0.29 10.7 0.0 2.2 2 0 0 2 2 2 0 HTH domain LexA_DNA_bind PF01726.11 gi|20089881|ref|NP_615956.1| - 0.044 13.3 0.0 0.081 12.4 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.14 gi|20089881|ref|NP_615956.1| - 0.048 13.3 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|20089881|ref|NP_615956.1| - 0.049 13.9 0.0 0.12 12.6 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20089881|ref|NP_615956.1| - 0.067 12.8 0.0 0.19 11.4 0.0 1.7 1 1 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|20089881|ref|NP_615956.1| - 0.095 12.8 0.7 0.16 12.1 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain zf-trcl PF13451.1 gi|20089881|ref|NP_615956.1| - 0.11 12.1 0.3 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain DUF4182 PF13790.1 gi|20089881|ref|NP_615956.1| - 0.16 11.7 1.7 5.6 6.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) Bac_Ubq_Cox PF01654.12 gi|20089882|ref|NP_615957.1| - 5.2e-155 516.1 28.1 6.2e-155 515.8 19.5 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Cyto_ox_2 PF02322.10 gi|20089883|ref|NP_615958.1| - 2.1e-94 316.3 34.0 2.4e-94 316.2 23.5 1.0 1 0 0 1 1 1 1 Cytochrome oxidase subunit II eRF1_2 PF03464.10 gi|20089884|ref|NP_615959.1| - 6.1e-32 110.7 0.0 1.2e-31 109.8 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|20089884|ref|NP_615959.1| - 1.1e-27 96.4 0.3 2.7e-27 95.2 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|20089884|ref|NP_615959.1| - 2.3e-17 62.8 0.1 2.4e-16 59.5 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 1 RNA_POL_M_15KD PF02150.11 gi|20089884|ref|NP_615959.1| - 0.056 13.1 0.5 1.5 8.5 0.1 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.11 gi|20089884|ref|NP_615959.1| - 0.077 12.7 0.5 0.24 11.1 0.4 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.14 gi|20089884|ref|NP_615959.1| - 0.089 12.4 0.1 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|20089884|ref|NP_615959.1| - 0.1 12.3 0.4 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|20089884|ref|NP_615959.1| - 0.12 11.9 0.4 3.5 7.3 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|20089884|ref|NP_615959.1| - 0.18 11.7 1.2 0.44 10.4 0.8 1.6 1 0 0 1 1 1 0 Rubredoxin UPF0547 PF10571.4 gi|20089884|ref|NP_615959.1| - 0.5 10.0 3.0 2.6 7.8 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_IS605 PF01385.14 gi|20089885|ref|NP_615960.1| - 1.6e-43 148.6 3.4 1.6e-43 148.6 2.4 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|20089885|ref|NP_615960.1| - 3.9e-23 80.8 0.7 7.1e-23 80.0 0.2 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|20089885|ref|NP_615960.1| - 5.2e-21 73.6 0.6 9.5e-21 72.8 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|20089885|ref|NP_615960.1| - 0.038 13.9 1.9 0.057 13.4 0.7 1.7 2 0 0 2 2 2 0 Piccolo Zn-finger DZR PF12773.2 gi|20089885|ref|NP_615960.1| - 0.053 13.3 0.7 0.1 12.4 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|20089885|ref|NP_615960.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|20089885|ref|NP_615960.1| - 0.96 9.3 6.6 11 6.0 4.6 2.4 1 1 0 1 1 1 0 Rubredoxin DUF2839 PF10999.3 gi|20089885|ref|NP_615960.1| - 2.8 8.0 5.3 20 5.3 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2839) zf-RanBP PF00641.13 gi|20089885|ref|NP_615960.1| - 6.1 6.0 8.3 15 4.8 0.3 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others CdhD PF03599.11 gi|20089886|ref|NP_615961.1| - 2.6e-158 526.5 0.1 3e-158 526.3 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|20089886|ref|NP_615961.1| - 5e-17 61.1 1.5 5e-17 61.1 1.1 1.9 2 0 0 2 2 2 1 Putative Fe-S cluster MOFRL PF05161.8 gi|20089886|ref|NP_615961.1| - 0.016 15.3 0.1 0.038 14.1 0.1 1.6 1 0 0 1 1 1 0 MOFRL family Peripla_BP_4 PF13407.1 gi|20089886|ref|NP_615961.1| - 2.4 7.4 5.9 8.3 5.6 0.0 2.5 2 1 1 3 3 3 0 Periplasmic binding protein domain CdhD PF03599.11 gi|20089887|ref|NP_615962.1| - 3.3e-93 312.2 2.3 6.9e-86 288.1 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CbiA PF01656.18 gi|20089888|ref|NP_615963.1| - 9.3e-23 80.6 0.3 1.3e-22 80.2 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|20089888|ref|NP_615963.1| - 3.5e-05 23.1 0.0 4.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Toprim PF01751.17 gi|20089888|ref|NP_615963.1| - 0.002 18.0 0.4 0.021 14.7 0.1 2.3 1 1 1 2 2 2 1 Toprim domain Toprim_4 PF13662.1 gi|20089888|ref|NP_615963.1| - 0.022 14.7 0.1 0.055 13.4 0.0 1.7 2 0 0 2 2 2 0 Toprim domain DUF2365 PF10157.4 gi|20089888|ref|NP_615963.1| - 0.076 12.9 0.3 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) CdhC PF03598.10 gi|20089889|ref|NP_615964.1| - 1.9e-187 622.7 0.3 2.4e-187 622.4 0.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.11 gi|20089890|ref|NP_615965.1| - 6.8e-31 107.0 0.0 8e-31 106.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|20089890|ref|NP_615965.1| - 1.1e-07 31.7 0.0 1.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.15 gi|20089891|ref|NP_615966.1| - 2.2e-113 379.4 2.4 7e-94 315.0 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.1 gi|20089891|ref|NP_615966.1| - 7.2e-07 29.3 8.0 7.2e-07 29.3 5.5 2.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20089891|ref|NP_615966.1| - 1e-06 28.6 7.5 1e-06 28.6 5.2 2.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20089891|ref|NP_615966.1| - 1.1e-06 28.2 12.0 0.0026 17.5 0.4 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089891|ref|NP_615966.1| - 3.2e-06 27.4 8.6 3.2e-06 27.4 6.0 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089891|ref|NP_615966.1| - 6.3e-06 25.9 6.7 6.3e-06 25.9 4.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20089891|ref|NP_615966.1| - 1e-05 25.8 11.7 0.0045 17.3 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089891|ref|NP_615966.1| - 0.00063 20.0 11.5 0.00063 20.0 8.0 3.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20089891|ref|NP_615966.1| - 0.001 18.8 21.9 0.0095 15.8 1.7 3.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20089891|ref|NP_615966.1| - 0.0071 15.9 24.8 0.016 14.7 1.6 3.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089891|ref|NP_615966.1| - 0.011 16.4 10.3 0.39 11.4 0.1 3.5 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|20089891|ref|NP_615966.1| - 0.012 15.5 4.5 0.012 15.5 3.1 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20089891|ref|NP_615966.1| - 0.023 15.0 25.9 0.078 13.3 1.1 4.0 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S2 PF00318.15 gi|20089891|ref|NP_615966.1| - 0.028 13.6 0.0 0.055 12.6 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S2 Fer4_13 PF13370.1 gi|20089891|ref|NP_615966.1| - 1.8 9.0 12.5 3.9 7.9 1.8 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF134 PF02001.11 gi|20089892|ref|NP_615967.1| - 5e-23 81.0 0.0 7.9e-23 80.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|20089892|ref|NP_615967.1| - 1.9e-05 23.9 0.0 2.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|20089892|ref|NP_615967.1| - 0.0017 17.8 0.0 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HypA PF01155.14 gi|20089892|ref|NP_615967.1| - 0.0029 17.2 1.7 0.0052 16.4 1.2 1.7 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|20089892|ref|NP_615967.1| - 0.0052 16.7 0.4 0.0052 16.7 0.3 1.9 2 0 0 2 2 1 1 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|20089892|ref|NP_615967.1| - 0.01 15.4 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain CC PF04942.9 gi|20089892|ref|NP_615967.1| - 0.047 13.5 0.9 0.62 9.9 0.1 2.4 2 0 0 2 2 2 0 CC domain Sigma70_ECF PF07638.6 gi|20089892|ref|NP_615967.1| - 0.066 12.8 0.0 0.085 12.5 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_1 PF00126.22 gi|20089892|ref|NP_615967.1| - 0.11 12.2 0.1 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4379 PF14311.1 gi|20089892|ref|NP_615967.1| - 0.29 10.9 4.6 0.66 9.8 3.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-IS66 PF13005.2 gi|20089892|ref|NP_615967.1| - 0.33 10.9 0.0 0.33 10.9 0.0 2.4 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|20089892|ref|NP_615967.1| - 1.9 8.3 7.5 1.2 8.9 0.9 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1451 PF07295.6 gi|20089892|ref|NP_615967.1| - 6.8 6.4 6.0 1.5 8.6 0.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1451) Gp_dh_C PF02800.15 gi|20089893|ref|NP_615968.1| - 3.9e-24 84.8 0.0 5.6e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|20089893|ref|NP_615968.1| - 8.7e-21 74.4 0.1 4.2e-20 72.2 0.1 2.1 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|20089893|ref|NP_615968.1| - 2.2e-12 46.9 0.1 6.9e-12 45.3 0.1 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|20089893|ref|NP_615968.1| - 5.8e-05 23.3 0.1 0.00015 22.0 0.1 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|20089893|ref|NP_615968.1| - 8.6e-05 22.9 0.1 0.00027 21.3 0.1 1.9 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|20089893|ref|NP_615968.1| - 0.00022 20.4 0.1 0.011 14.8 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|20089893|ref|NP_615968.1| - 0.00053 20.4 0.1 0.0015 19.0 0.1 1.8 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|20089893|ref|NP_615968.1| - 0.0015 17.6 0.1 0.0021 17.0 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|20089893|ref|NP_615968.1| - 0.0053 16.7 0.1 0.013 15.4 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|20089893|ref|NP_615968.1| - 0.041 14.3 0.2 0.13 12.7 0.2 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|20089893|ref|NP_615968.1| - 0.063 12.6 1.0 0.83 9.0 0.3 2.5 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox_2 PF07992.9 gi|20089894|ref|NP_615969.1| - 1e-30 107.1 0.1 1.6e-30 106.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|20089894|ref|NP_615969.1| - 2.3e-16 59.8 0.0 5.8e-16 58.5 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|20089894|ref|NP_615969.1| - 5.4e-15 55.5 1.1 5.3e-12 45.9 0.0 3.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|20089894|ref|NP_615969.1| - 2.9e-10 40.5 0.0 2.7e-07 30.8 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|20089894|ref|NP_615969.1| - 1.1e-06 27.7 0.0 0.029 13.2 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20089894|ref|NP_615969.1| - 0.00063 18.3 0.1 0.74 8.2 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|20089894|ref|NP_615969.1| - 0.0011 18.0 0.0 0.0049 16.0 0.0 2.0 2 0 0 2 2 2 1 Thi4 family F420_oxidored PF03807.12 gi|20089894|ref|NP_615969.1| - 0.0077 16.6 1.2 3.2 8.2 0.1 2.6 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|20089894|ref|NP_615969.1| - 0.012 15.2 0.3 0.25 10.9 0.1 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.13 gi|20089894|ref|NP_615969.1| - 0.025 12.9 0.0 0.037 12.3 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor FAD_binding_2 PF00890.19 gi|20089894|ref|NP_615969.1| - 0.039 12.8 0.7 0.22 10.3 0.1 2.1 2 1 0 2 2 2 0 FAD binding domain MS_channel PF00924.13 gi|20089895|ref|NP_615970.1| - 1.4e-24 86.5 1.9 2.5e-24 85.7 1.3 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel PX PF00787.19 gi|20089895|ref|NP_615970.1| - 0.19 11.5 1.8 0.5 10.1 1.2 1.7 1 0 0 1 1 1 0 PX domain Viral_P18 PF04521.8 gi|20089895|ref|NP_615970.1| - 2.7 7.4 15.9 4.6 6.7 0.9 3.2 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein UPF0184 PF03670.8 gi|20089895|ref|NP_615970.1| - 8.5 6.6 6.6 40 4.4 0.2 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) CbiA PF01656.18 gi|20089896|ref|NP_615971.1| - 3.6e-21 75.4 0.0 4.8e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|20089896|ref|NP_615971.1| - 5.1e-08 32.9 0.1 4.8e-06 26.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|20089896|ref|NP_615971.1| - 4e-06 26.2 0.7 0.0016 17.7 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|20089896|ref|NP_615971.1| - 7.2e-06 26.8 0.3 1.2e-05 26.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|20089896|ref|NP_615971.1| - 2.6e-05 23.4 1.3 3.2e-05 23.1 0.4 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase DUF87 PF01935.12 gi|20089896|ref|NP_615971.1| - 0.00032 20.5 0.2 0.00058 19.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|20089896|ref|NP_615971.1| - 0.0012 18.0 0.1 0.002 17.2 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.17 gi|20089896|ref|NP_615971.1| - 0.0012 18.3 0.6 0.03 13.7 0.2 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|20089896|ref|NP_615971.1| - 0.0017 17.7 0.1 0.0066 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|20089896|ref|NP_615971.1| - 0.0028 17.3 0.1 0.0045 16.6 0.1 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase ABC_tran PF00005.22 gi|20089896|ref|NP_615971.1| - 0.0031 17.8 0.1 0.0049 17.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|20089896|ref|NP_615971.1| - 0.0035 17.6 0.1 0.011 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|20089896|ref|NP_615971.1| - 0.004 17.6 0.1 0.025 15.0 0.0 2.0 2 0 0 2 2 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|20089896|ref|NP_615971.1| - 0.0069 16.3 0.4 0.072 13.0 0.3 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TrkA_N PF02254.13 gi|20089896|ref|NP_615971.1| - 0.013 15.5 0.1 0.33 10.9 0.0 2.5 2 1 1 3 3 3 0 TrkA-N domain MipZ PF09140.6 gi|20089896|ref|NP_615971.1| - 0.024 13.6 0.9 0.21 10.6 0.1 2.0 2 0 0 2 2 2 0 ATPase MipZ MobB PF03205.9 gi|20089896|ref|NP_615971.1| - 0.039 13.6 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|20089896|ref|NP_615971.1| - 0.04 13.7 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|20089896|ref|NP_615971.1| - 0.042 13.0 0.1 0.11 11.6 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|20089896|ref|NP_615971.1| - 0.051 12.4 0.0 0.069 12.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|20089896|ref|NP_615971.1| - 0.087 13.0 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|20089896|ref|NP_615971.1| - 0.091 12.3 0.4 0.18 11.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|20089896|ref|NP_615971.1| - 0.096 12.4 0.5 2.7 7.7 0.3 2.5 1 1 0 1 1 1 0 Dynamin family AAA_10 PF12846.2 gi|20089896|ref|NP_615971.1| - 0.11 11.8 0.1 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain PRK PF00485.13 gi|20089896|ref|NP_615971.1| - 0.15 11.5 0.1 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TPP_enzyme_C PF02775.16 gi|20089897|ref|NP_615972.1| - 1.2e-27 96.3 0.2 2.6e-27 95.2 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|20089897|ref|NP_615972.1| - 2.5e-11 43.5 0.2 1.8e-10 40.6 0.1 2.2 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|20089897|ref|NP_615972.1| - 6.6e-09 34.9 12.0 0.00015 21.2 2.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089897|ref|NP_615972.1| - 1.2e-05 25.0 11.2 2.5e-05 23.9 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20089897|ref|NP_615972.1| - 3.7e-05 23.5 9.6 0.0001 22.0 6.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089897|ref|NP_615972.1| - 0.00023 21.4 11.8 0.00023 21.4 8.2 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|20089897|ref|NP_615972.1| - 0.00041 19.8 0.0 0.0011 18.4 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.2 gi|20089897|ref|NP_615972.1| - 0.0017 18.1 3.6 0.0017 18.1 2.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20089897|ref|NP_615972.1| - 0.0075 16.5 12.6 0.0075 16.5 8.8 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089897|ref|NP_615972.1| - 0.017 14.9 17.6 0.16 11.8 2.0 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Transket_pyr PF02779.19 gi|20089897|ref|NP_615972.1| - 0.041 13.3 0.1 0.45 9.9 0.0 2.2 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_4 PF12800.2 gi|20089897|ref|NP_615972.1| - 0.052 13.8 18.0 0.17 12.3 1.8 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20089897|ref|NP_615972.1| - 0.22 12.2 8.3 0.93 10.2 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|20089897|ref|NP_615972.1| - 0.59 10.7 16.8 0.066 13.7 1.4 3.1 2 1 1 3 3 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|20089898|ref|NP_615973.1| - 1.3e-38 132.6 0.3 1.5e-38 132.4 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Lipoprotein_9 PF03180.9 gi|20089898|ref|NP_615973.1| - 0.064 12.1 0.0 2.3 7.0 0.0 2.2 2 0 0 2 2 2 0 NLPA lipoprotein DUF552 PF04472.7 gi|20089898|ref|NP_615973.1| - 0.11 12.3 0.1 8.4 6.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF552) DUF4277 PF14104.1 gi|20089899|ref|NP_615974.1| - 8.5e-36 122.6 0.0 1e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) Imm42 PF15601.1 gi|20089900|ref|NP_615975.1| - 0.03 13.7 0.3 0.048 13.0 0.2 1.3 1 0 0 1 1 1 0 Immunity protein 42 DDE_Tnp_1 PF01609.16 gi|20089900|ref|NP_615975.1| - 0.073 12.6 0.0 0.1 12.1 0.0 1.4 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20089901|ref|NP_615976.1| - 0.00019 21.0 0.0 0.00024 20.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain PP-binding PF00550.20 gi|20089902|ref|NP_615977.1| - 2.8e-06 27.4 0.2 3.3e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.1 gi|20089902|ref|NP_615977.1| - 0.018 15.0 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Acyl-carrier AMP-binding PF00501.23 gi|20089903|ref|NP_615978.1| - 5.3e-64 216.1 0.0 6.2e-64 215.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|20089903|ref|NP_615978.1| - 3.2e-06 27.9 0.0 6.7e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain tRNA_Me_trans PF03054.11 gi|20089904|ref|NP_615979.1| - 0.00011 20.8 0.4 0.00037 19.1 0.1 1.8 1 1 1 2 2 2 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|20089904|ref|NP_615979.1| - 0.002 17.0 0.0 0.003 16.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|20089904|ref|NP_615979.1| - 0.0044 16.3 0.0 0.0073 15.6 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|20089904|ref|NP_615979.1| - 0.019 14.4 0.0 0.038 13.4 0.0 1.5 2 0 0 2 2 2 0 PP-loop family Asn_synthase PF00733.16 gi|20089904|ref|NP_615979.1| - 0.039 13.4 0.0 0.057 12.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_4 PF01902.12 gi|20089904|ref|NP_615979.1| - 0.11 11.7 0.1 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 ATP-binding region Cytomega_UL84 PF06284.6 gi|20089904|ref|NP_615979.1| - 0.14 10.5 0.0 0.2 10.0 0.0 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein NAD_synthase PF02540.12 gi|20089905|ref|NP_615980.1| - 1.8e-50 171.1 0.6 2e-30 105.4 0.1 2.1 2 0 0 2 2 2 2 NAD synthase DUF3826 PF12875.2 gi|20089905|ref|NP_615980.1| - 0.0029 17.3 0.2 0.0063 16.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3826) QueC PF06508.8 gi|20089905|ref|NP_615980.1| - 0.011 14.9 0.0 0.85 8.8 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|20089905|ref|NP_615980.1| - 0.099 11.1 0.0 0.17 10.4 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase DUF362 PF04015.7 gi|20089906|ref|NP_615981.1| - 1.1e-63 214.4 0.1 1.5e-63 214.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|20089906|ref|NP_615981.1| - 6.1e-09 35.1 12.7 8.3e-05 22.0 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20089906|ref|NP_615981.1| - 2.3e-06 27.1 13.9 0.0028 17.4 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20089906|ref|NP_615981.1| - 5.5e-05 22.8 13.9 0.0001 21.9 9.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20089906|ref|NP_615981.1| - 6.1e-05 23.3 14.3 0.00016 21.9 9.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20089906|ref|NP_615981.1| - 6.3e-05 22.6 14.3 0.00061 19.5 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20089906|ref|NP_615981.1| - 0.00031 20.5 14.5 0.00071 19.3 10.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20089906|ref|NP_615981.1| - 0.0014 18.8 13.9 0.0033 17.6 9.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20089906|ref|NP_615981.1| - 0.0057 16.9 8.4 0.17 12.2 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20089906|ref|NP_615981.1| - 0.0089 16.7 12.1 0.31 11.8 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain DUF2088 PF09861.4 gi|20089906|ref|NP_615981.1| - 0.019 14.0 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_15 PF13459.1 gi|20089906|ref|NP_615981.1| - 0.034 14.6 10.9 1 9.9 0.5 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|20089906|ref|NP_615981.1| - 0.035 14.1 14.2 0.53 10.3 4.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20089906|ref|NP_615981.1| - 5.2 7.8 19.0 9.8 7.0 4.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Hexapep PF00132.19 gi|20089907|ref|NP_615982.1| - 9.7e-13 47.0 14.7 3.7e-07 29.3 5.7 3.2 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20089907|ref|NP_615982.1| - 8.4e-08 31.6 17.4 0.00011 21.7 5.4 3.3 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase DUF457 PF04307.9 gi|20089908|ref|NP_615983.1| - 9.3e-12 44.5 10.7 1.8e-11 43.6 7.4 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4282 PF14110.1 gi|20089908|ref|NP_615983.1| - 0.32 11.2 0.2 0.32 11.2 0.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) EamA PF00892.15 gi|20089908|ref|NP_615983.1| - 0.74 9.8 14.0 1.2 9.2 1.5 3.0 3 0 0 3 3 3 0 EamA-like transporter family DUF2626 PF11117.3 gi|20089908|ref|NP_615983.1| - 1.8 8.9 13.1 4.1 7.8 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2626) DUF4133 PF13571.1 gi|20089908|ref|NP_615983.1| - 3.2 8.0 6.8 13 6.1 0.0 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4133) SecG PF03840.9 gi|20089908|ref|NP_615983.1| - 4.1 7.2 7.3 0.4 10.4 0.5 2.4 2 0 0 2 2 2 0 Preprotein translocase SecG subunit rve PF00665.21 gi|20089909|ref|NP_615984.1| - 8.9e-14 51.6 0.0 1.6e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089909|ref|NP_615984.1| - 3.9e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20089909|ref|NP_615984.1| - 0.0038 17.3 0.0 0.0094 16.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|20089909|ref|NP_615984.1| - 0.024 13.9 0.0 0.054 12.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|20089909|ref|NP_615984.1| - 0.04 14.0 0.0 0.17 12.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|20089909|ref|NP_615984.1| - 0.041 13.5 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Lsm_C PF14894.1 gi|20089909|ref|NP_615984.1| - 0.079 12.4 0.1 0.26 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal MULE PF10551.4 gi|20089910|ref|NP_615985.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20089910|ref|NP_615985.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20089910|ref|NP_615985.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20089910|ref|NP_615985.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20089910|ref|NP_615985.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20089910|ref|NP_615985.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20089910|ref|NP_615985.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20089910|ref|NP_615985.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger SVA PF05326.6 gi|20089911|ref|NP_615986.1| - 0.12 12.1 0.4 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 Seminal vesicle autoantigen (SVA) DDE_Tnp_IS1 PF03400.8 gi|20089912|ref|NP_615987.1| - 1.6e-07 31.5 0.1 0.00036 20.6 0.1 2.2 2 0 0 2 2 2 2 IS1 transposase ATG11 PF10377.4 gi|20089913|ref|NP_615988.1| - 0.073 12.9 0.0 0.082 12.7 0.0 1.2 1 0 0 1 1 1 0 Autophagy-related protein 11 OrfB_IS605 PF01385.14 gi|20089913|ref|NP_615988.1| - 0.11 11.8 0.1 0.11 11.8 0.1 1.0 1 0 0 1 1 1 0 Probable transposase Disaggr_assoc PF08480.5 gi|20089914|ref|NP_615989.1| - 1.6e-83 278.9 15.7 1.6e-83 278.9 10.9 3.3 2 1 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.1 gi|20089914|ref|NP_615989.1| - 2e-19 69.8 54.2 3.7e-15 56.0 15.2 3.8 1 1 3 4 4 4 3 Right handed beta helix region NosD PF05048.8 gi|20089914|ref|NP_615989.1| - 1.5e-06 27.5 10.9 1.5e-06 27.5 7.6 4.0 1 1 2 4 4 4 2 Periplasmic copper-binding protein (NosD) Disaggr_assoc PF08480.5 gi|20089915|ref|NP_615990.1| - 3.7e-34 117.9 21.9 6.4e-33 113.8 5.7 3.4 2 1 1 3 3 3 2 Disaggregatase related Beta_helix PF13229.1 gi|20089915|ref|NP_615990.1| - 3e-22 79.0 51.2 5.6e-13 48.9 17.8 2.8 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|20089915|ref|NP_615990.1| - 1.4e-09 38.4 5.8 1.4e-09 38.4 4.0 2.3 1 1 1 2 2 2 2 Pectate lyase superfamily protein DUF1565 PF07602.6 gi|20089915|ref|NP_615990.1| - 9.7e-06 24.8 11.0 0.031 13.4 0.2 3.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) DUF4096 PF13340.1 gi|20089916|ref|NP_615991.1| - 2.9e-24 84.6 0.0 3.9e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_6 PF13751.1 gi|20089917|ref|NP_615992.1| - 1.4e-28 99.4 6.1 2.8e-28 98.4 3.7 2.1 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20089917|ref|NP_615992.1| - 6.2e-19 68.3 0.4 1.3e-18 67.3 0.3 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20089917|ref|NP_615992.1| - 2.4e-17 62.5 0.0 8e-17 60.9 0.0 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|20089917|ref|NP_615992.1| - 0.016 15.3 0.1 0.61 10.3 0.0 2.8 2 0 0 2 2 2 0 Transposase DDE domain AhpC-TSA PF00578.16 gi|20089917|ref|NP_615992.1| - 0.023 14.4 0.4 0.051 13.2 0.3 1.5 1 0 0 1 1 1 0 AhpC/TSA family DDE_Tnp_IS1 PF03400.8 gi|20089918|ref|NP_615993.1| - 5.2e-12 46.0 0.4 5.8e-12 45.8 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase 6PF2K PF01591.13 gi|20089918|ref|NP_615993.1| - 0.067 12.2 0.0 0.076 12.0 0.0 1.1 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DDE_Tnp_IS240 PF13610.1 gi|20089918|ref|NP_615993.1| - 0.082 12.8 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 DDE domain DUF772 PF05598.6 gi|20089919|ref|NP_615994.1| - 2.2e-16 59.5 0.0 3.9e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF4404 PF14357.1 gi|20089919|ref|NP_615994.1| - 0.11 12.9 0.8 0.77 10.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) IstB_IS21 PF01695.12 gi|20089920|ref|NP_615995.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20089920|ref|NP_615995.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20089920|ref|NP_615995.1| - 3.9e-05 23.4 0.0 8.7e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20089920|ref|NP_615995.1| - 0.0003 21.5 2.1 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20089920|ref|NP_615995.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20089920|ref|NP_615995.1| - 0.00038 20.4 0.0 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20089920|ref|NP_615995.1| - 0.00051 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|20089920|ref|NP_615995.1| - 0.00052 19.9 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20089920|ref|NP_615995.1| - 0.00063 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20089920|ref|NP_615995.1| - 0.0007 19.7 0.5 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20089920|ref|NP_615995.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20089920|ref|NP_615995.1| - 0.0031 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20089920|ref|NP_615995.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|20089920|ref|NP_615995.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|20089920|ref|NP_615995.1| - 0.014 15.6 3.5 0.048 13.9 0.1 2.8 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|20089920|ref|NP_615995.1| - 0.019 14.3 1.2 0.073 12.4 0.0 2.3 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20089920|ref|NP_615995.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20089920|ref|NP_615995.1| - 0.034 14.1 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20089920|ref|NP_615995.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 2 3 3 3 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20089920|ref|NP_615995.1| - 0.05 13.4 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20089920|ref|NP_615995.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20089920|ref|NP_615995.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20089920|ref|NP_615995.1| - 0.063 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20089920|ref|NP_615995.1| - 0.071 12.6 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20089920|ref|NP_615995.1| - 0.082 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20089920|ref|NP_615995.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20089920|ref|NP_615995.1| - 0.15 12.4 0.4 0.69 10.2 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20089920|ref|NP_615995.1| - 0.72 9.8 4.2 4.5 7.2 1.2 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20089921|ref|NP_615996.1| - 8.7e-16 58.1 0.0 1.5e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089921|ref|NP_615996.1| - 1e-05 24.9 0.0 3.6e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Integrase core domain rve_2 PF13333.1 gi|20089921|ref|NP_615996.1| - 0.072 13.1 0.0 0.21 11.6 0.0 1.8 1 0 0 1 1 1 0 Integrase core domain HTH_38 PF13936.1 gi|20089922|ref|NP_615997.1| - 1.9e-07 30.5 0.8 3.4e-07 29.6 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20089922|ref|NP_615997.1| - 2.2e-06 27.4 0.5 5.6e-06 26.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|20089922|ref|NP_615997.1| - 7.9e-06 25.3 0.0 1.7e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20089922|ref|NP_615997.1| - 0.00054 20.0 0.0 0.044 13.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|20089922|ref|NP_615997.1| - 0.0031 16.7 0.1 0.0054 16.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|20089922|ref|NP_615997.1| - 0.0036 17.1 0.1 0.0061 16.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_Tnp_Tc3_1 PF11427.3 gi|20089922|ref|NP_615997.1| - 0.0044 16.6 0.0 0.0077 15.8 0.0 1.4 1 0 0 1 1 1 1 Tc3 transposase Terminase_5 PF06056.7 gi|20089922|ref|NP_615997.1| - 0.0054 16.2 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|20089922|ref|NP_615997.1| - 0.0069 16.5 0.0 0.0097 16.0 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|20089922|ref|NP_615997.1| - 0.0083 16.1 0.1 0.021 14.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20089922|ref|NP_615997.1| - 0.013 15.1 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20089922|ref|NP_615997.1| - 0.018 14.4 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MerR_1 PF13411.1 gi|20089922|ref|NP_615997.1| - 0.021 14.5 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sigma70_r4_2 PF08281.7 gi|20089922|ref|NP_615997.1| - 0.022 14.2 0.1 0.036 13.5 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|20089922|ref|NP_615997.1| - 0.036 14.2 0.0 0.11 12.7 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain MerR PF00376.18 gi|20089922|ref|NP_615997.1| - 0.055 13.0 0.3 0.11 12.0 0.2 1.6 1 0 0 1 1 1 0 MerR family regulatory protein HTH_IclR PF09339.5 gi|20089922|ref|NP_615997.1| - 0.11 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|20089922|ref|NP_615997.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 MarR family DDE_Tnp_1_6 PF13751.1 gi|20089923|ref|NP_615998.1| - 5.7e-29 100.6 8.1 9.1e-29 100.0 5.6 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20089923|ref|NP_615998.1| - 9.4e-05 22.0 2.5 0.00013 21.6 1.7 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF2800 PF10926.3 gi|20089923|ref|NP_615998.1| - 0.061 12.4 1.2 0.078 12.0 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) Polysacc_synt PF01943.12 gi|20089924|ref|NP_615999.1| - 5e-33 114.5 39.0 5e-33 114.5 27.0 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|20089924|ref|NP_615999.1| - 4.4e-22 78.7 25.8 4.4e-22 78.7 17.9 3.2 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|20089924|ref|NP_615999.1| - 8.3e-15 54.8 25.2 8.3e-15 54.8 17.5 3.9 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|20089924|ref|NP_615999.1| - 2.2e-13 50.1 35.2 7.6e-13 48.3 10.8 4.4 3 1 1 4 4 4 2 MatE MVIN PF03023.9 gi|20089924|ref|NP_615999.1| - 0.00036 19.0 49.5 0.00036 19.0 34.3 2.0 1 1 1 2 2 2 1 MviN-like protein Peptidase_M50 PF02163.17 gi|20089924|ref|NP_615999.1| - 8.5 5.2 12.6 0.34 9.8 0.3 3.6 1 1 1 2 2 2 0 Peptidase family M50 DUF2206 PF09971.4 gi|20089925|ref|NP_616000.1| - 5.2e-110 367.7 37.7 5.2e-110 367.7 26.2 3.6 2 1 0 3 3 3 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.6 gi|20089925|ref|NP_616000.1| - 7.1e-52 176.3 24.3 7.1e-52 176.3 16.8 3.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1616) DUF4277 PF14104.1 gi|20089926|ref|NP_616001.1| - 3.9e-41 139.8 0.0 9e-41 138.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20089926|ref|NP_616001.1| - 1.6e-10 40.9 0.1 2.5e-09 37.0 0.0 2.2 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20089926|ref|NP_616001.1| - 0.02 14.3 0.5 0.053 12.9 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 MULE PF10551.4 gi|20089927|ref|NP_616002.1| - 2.9e-11 43.3 0.0 5.1e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.1 gi|20089927|ref|NP_616002.1| - 0.0011 18.9 0.1 0.0017 18.3 0.1 1.4 1 0 0 1 1 1 1 DDE domain Brix PF04427.13 gi|20089927|ref|NP_616002.1| - 3.1 7.3 6.9 8.6 5.9 0.5 2.7 1 1 1 2 2 2 0 Brix domain rve PF00665.21 gi|20089928|ref|NP_616003.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089928|ref|NP_616003.1| - 2e-05 24.0 0.0 5.1e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20089928|ref|NP_616003.1| - 0.00093 18.7 0.1 0.0023 17.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20089928|ref|NP_616003.1| - 0.0017 17.8 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20089928|ref|NP_616003.1| - 0.0051 16.4 0.3 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20089928|ref|NP_616003.1| - 0.006 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|20089928|ref|NP_616003.1| - 0.014 15.0 0.1 0.03 13.9 0.1 1.5 1 0 0 1 1 1 0 HTH domain MerR_1 PF13411.1 gi|20089928|ref|NP_616003.1| - 0.016 14.9 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_IclR PF09339.5 gi|20089928|ref|NP_616003.1| - 0.028 13.9 0.0 0.075 12.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|20089928|ref|NP_616003.1| - 0.029 14.5 0.1 0.1 12.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_7 PF02796.10 gi|20089928|ref|NP_616003.1| - 0.037 13.9 0.3 0.9 9.4 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF2312 PF10073.4 gi|20089928|ref|NP_616003.1| - 0.041 13.2 0.0 2.5 7.5 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_28 PF13518.1 gi|20089928|ref|NP_616003.1| - 0.045 13.7 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|20089928|ref|NP_616003.1| - 0.056 12.8 0.0 0.19 11.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF746 PF05344.6 gi|20089928|ref|NP_616003.1| - 0.057 12.9 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_3 PF01381.17 gi|20089928|ref|NP_616003.1| - 0.086 12.6 0.2 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_5 PF01022.15 gi|20089928|ref|NP_616003.1| - 0.087 12.5 0.0 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Disaggr_repeat PF06848.6 gi|20089929|ref|NP_616004.1| - 4.7e-189 622.5 22.5 1.5e-94 314.5 4.5 2.5 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|20089929|ref|NP_616004.1| - 5.2e-80 267.5 13.3 5.2e-80 267.5 9.2 4.2 3 1 0 3 3 3 1 Disaggregatase related Beta_helix PF13229.1 gi|20089929|ref|NP_616004.1| - 1.1e-12 47.9 48.5 2.6e-10 40.2 12.6 4.1 3 1 1 4 4 4 2 Right handed beta helix region TGFb_propeptide PF00688.13 gi|20089929|ref|NP_616004.1| - 6.1e-07 28.9 0.0 0.91 8.7 0.0 4.2 3 1 0 4 4 4 3 TGF-beta propeptide DUF4277 PF14104.1 gi|20089930|ref|NP_616005.1| - 2e-41 140.8 0.0 4.5e-41 139.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20089930|ref|NP_616005.1| - 6.5e-10 38.9 0.1 1.1e-08 34.9 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20089930|ref|NP_616005.1| - 0.032 13.6 0.5 0.087 12.2 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 Glyco_trans_1_4 PF13692.1 gi|20089931|ref|NP_616006.1| - 2.4e-25 89.2 0.0 4.9e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20089931|ref|NP_616006.1| - 7.2e-13 48.6 0.5 1.1e-12 48.0 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|20089931|ref|NP_616006.1| - 1.4e-12 47.3 0.0 2.7e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20089931|ref|NP_616006.1| - 4.8e-09 36.3 0.0 9e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20089931|ref|NP_616006.1| - 4.4e-08 33.4 0.0 6e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|20089931|ref|NP_616006.1| - 0.00016 21.5 4.9 0.01 15.6 3.4 2.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|20089932|ref|NP_616007.1| - 2.9e-43 147.2 0.0 5.4e-43 146.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20089932|ref|NP_616007.1| - 1.4e-15 57.6 0.0 2.5e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20089932|ref|NP_616007.1| - 5.5e-07 29.8 0.0 8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|20089932|ref|NP_616007.1| - 3e-06 27.0 0.2 7.1e-06 25.8 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|20089932|ref|NP_616007.1| - 5.8e-06 26.4 0.0 1.8e-05 24.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20089932|ref|NP_616007.1| - 0.00012 21.8 2.8 0.00067 19.5 1.1 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like DUF3492 PF11997.3 gi|20089932|ref|NP_616007.1| - 0.0021 17.6 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3492) AMP-binding PF00501.23 gi|20089933|ref|NP_616008.1| - 8.1e-05 21.1 0.0 0.00014 20.4 0.0 1.4 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|20089933|ref|NP_616008.1| - 0.023 13.3 0.2 0.061 12.0 0.1 1.6 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE DUF354 PF04007.7 gi|20089934|ref|NP_616009.1| - 7.5e-23 80.9 0.0 1.1e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) DUF3390 PF11870.3 gi|20089934|ref|NP_616009.1| - 0.11 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Arabinose_bd PF12625.2 gi|20089934|ref|NP_616009.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Arabinose-binding domain of AraC transcription regulator, N-term Methyltransf_18 PF12847.2 gi|20089935|ref|NP_616010.1| - 4.2e-16 59.5 0.0 6.3e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089935|ref|NP_616010.1| - 1.2e-15 57.4 0.1 1.9e-15 56.7 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089935|ref|NP_616010.1| - 2.8e-08 33.6 0.1 4.2e-08 33.0 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089935|ref|NP_616010.1| - 3.2e-08 33.9 0.0 5.7e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089935|ref|NP_616010.1| - 2.1e-07 31.2 0.1 4.5e-07 30.1 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20089935|ref|NP_616010.1| - 2.5e-07 31.0 0.1 6.1e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|20089935|ref|NP_616010.1| - 3.1e-07 30.1 0.0 5.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089935|ref|NP_616010.1| - 5.3e-07 29.1 0.0 1.4e-06 27.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|20089935|ref|NP_616010.1| - 2.8e-06 26.5 0.0 3.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|20089935|ref|NP_616010.1| - 6.2e-06 26.2 0.0 1.6e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20089935|ref|NP_616010.1| - 1.1e-05 24.6 0.0 2.3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|20089935|ref|NP_616010.1| - 1.6e-05 24.1 0.0 2.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|20089935|ref|NP_616010.1| - 0.00054 19.5 0.0 0.00085 18.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|20089935|ref|NP_616010.1| - 0.0027 17.1 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) AdoMet_MTase PF07757.8 gi|20089935|ref|NP_616010.1| - 0.0035 17.4 0.1 0.015 15.4 0.0 2.0 2 0 0 2 2 2 1 Predicted AdoMet-dependent methyltransferase Methyltransf_9 PF08003.6 gi|20089935|ref|NP_616010.1| - 0.0039 15.9 0.0 0.0054 15.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Pox_MCEL PF03291.11 gi|20089935|ref|NP_616010.1| - 0.0043 15.9 0.1 0.0065 15.3 0.1 1.2 1 0 0 1 1 1 1 mRNA capping enzyme PrmA PF06325.8 gi|20089935|ref|NP_616010.1| - 0.0072 15.4 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|20089935|ref|NP_616010.1| - 0.031 13.2 0.0 0.046 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|20089935|ref|NP_616010.1| - 0.076 12.3 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.5 gi|20089935|ref|NP_616010.1| - 0.1 12.1 0.5 0.34 10.4 0.0 1.8 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Polysacc_deac_1 PF01522.16 gi|20089936|ref|NP_616011.1| - 0.001 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.3 gi|20089937|ref|NP_616012.1| - 1e-22 80.0 0.1 4.5e-22 77.9 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|20089937|ref|NP_616012.1| - 2.4e-19 69.1 0.0 2.5e-16 59.4 0.0 2.4 2 0 0 2 2 2 2 Polysaccharide deacetylase Glycos_transf_2 PF00535.21 gi|20089938|ref|NP_616013.1| - 2.4e-36 124.9 0.1 5e-21 75.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20089938|ref|NP_616013.1| - 5.8e-05 23.0 0.0 0.016 14.9 0.0 2.4 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20089938|ref|NP_616013.1| - 0.00011 22.4 0.0 0.007 16.6 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|20089938|ref|NP_616013.1| - 0.0088 15.3 0.0 0.02 14.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 DUF3708 PF12501.3 gi|20089938|ref|NP_616013.1| - 0.19 11.5 0.8 0.78 9.5 0.5 2.0 2 0 0 2 2 2 0 Phosphate ATP-binding cassette transporter Abi PF02517.11 gi|20089939|ref|NP_616014.1| - 7.2e-16 58.1 7.1 7.2e-16 58.1 4.9 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity VanZ PF04892.7 gi|20089940|ref|NP_616015.1| - 5.6e-05 23.1 0.5 8.8e-05 22.4 0.4 1.5 1 1 0 1 1 1 1 VanZ like family Chordopox_A13L PF05961.6 gi|20089940|ref|NP_616015.1| - 0.07 13.0 0.6 0.11 12.4 0.1 1.5 2 0 0 2 2 2 0 Chordopoxvirus A13L protein Ribosomal_L3 PF00297.17 gi|20089942|ref|NP_616017.1| - 3.3e-71 239.7 0.1 3.8e-71 239.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|20089943|ref|NP_616018.1| - 5.3e-47 159.6 0.2 6.1e-47 159.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|20089944|ref|NP_616019.1| - 2e-13 50.0 1.7 3.4e-13 49.3 1.2 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 ToxN_toxin PF13958.1 gi|20089944|ref|NP_616019.1| - 0.048 13.3 0.2 0.05 13.2 0.2 1.0 1 0 0 1 1 1 0 Toxin ToxN, type III toxin-antitoxin system DUF3901 PF13040.1 gi|20089944|ref|NP_616019.1| - 0.17 11.2 3.2 0.18 11.1 0.2 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3901) Ribosomal_L2_C PF03947.13 gi|20089945|ref|NP_616020.1| - 4.1e-38 130.1 0.5 5.7e-38 129.6 0.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|20089945|ref|NP_616020.1| - 1.5e-14 53.7 0.0 3e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|20089946|ref|NP_616021.1| - 8.8e-26 89.3 0.5 1.3e-25 88.8 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.16 gi|20089946|ref|NP_616021.1| - 0.071 11.8 0.0 0.072 11.8 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase Ribosomal_L22 PF00237.14 gi|20089947|ref|NP_616022.1| - 2.7e-35 120.4 0.2 3.2e-35 120.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Helicase_IV_N PF12462.3 gi|20089947|ref|NP_616022.1| - 0.054 13.1 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal Ribosomal_S3_C PF00189.15 gi|20089948|ref|NP_616023.1| - 1.3e-16 60.5 0.0 2.2e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|20089948|ref|NP_616023.1| - 9.6e-15 53.9 0.0 2.2e-14 52.7 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|20089948|ref|NP_616023.1| - 0.016 14.8 2.4 0.04 13.5 0.3 2.5 3 0 0 3 3 3 0 KH domain KH_4 PF13083.1 gi|20089948|ref|NP_616023.1| - 0.022 14.4 0.0 0.059 13.0 0.0 1.8 1 0 0 1 1 1 0 KH domain Mitofilin PF09731.4 gi|20089948|ref|NP_616023.1| - 0.046 12.3 3.2 0.06 12.0 2.2 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein KH_3 PF13014.1 gi|20089948|ref|NP_616023.1| - 0.14 11.7 0.4 1 9.0 0.1 2.3 2 0 0 2 2 2 0 KH domain DUF935 PF06074.7 gi|20089948|ref|NP_616023.1| - 0.74 8.4 5.7 0.58 8.8 2.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF935) DUF2360 PF10152.4 gi|20089948|ref|NP_616023.1| - 9.6 6.4 13.4 40 4.4 9.3 2.0 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Ribosomal_L29 PF00831.18 gi|20089949|ref|NP_616024.1| - 3.9e-18 64.8 0.3 4.4e-18 64.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MerR-DNA-bind PF09278.6 gi|20089949|ref|NP_616024.1| - 0.24 11.8 1.3 5.3 7.5 0.0 2.2 2 0 0 2 2 2 0 MerR, DNA binding UPF0086 PF01868.11 gi|20089950|ref|NP_616025.1| - 9.7e-31 105.2 0.1 1.1e-30 105.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|20089951|ref|NP_616026.1| - 1.5e-28 98.6 4.6 1.8e-28 98.3 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 DUF769 PF05590.6 gi|20089951|ref|NP_616026.1| - 0.098 11.8 0.0 0.12 11.5 0.0 1.0 1 0 0 1 1 1 0 Xylella fastidiosa protein of unknown function (DUF769) Ribosomal_L14 PF00238.14 gi|20089952|ref|NP_616027.1| - 2.1e-36 124.3 0.7 2.3e-36 124.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|20089953|ref|NP_616028.1| - 7.4e-06 25.4 0.5 1.5e-05 24.4 0.4 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_S4e PF00900.15 gi|20089954|ref|NP_616029.1| - 3.9e-27 93.7 0.5 7.6e-27 92.8 0.3 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|20089954|ref|NP_616029.1| - 1.1e-10 41.1 3.5 2.6e-10 39.9 2.5 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|20089954|ref|NP_616029.1| - 1.9e-05 23.9 1.3 3.9e-05 23.0 0.0 2.2 3 0 0 3 3 3 1 S4 domain KOW PF00467.24 gi|20089954|ref|NP_616029.1| - 0.00017 21.1 2.4 0.00022 20.8 0.2 2.4 2 0 0 2 2 2 1 KOW motif Enterotoxin_b PF01376.13 gi|20089954|ref|NP_616029.1| - 0.12 12.2 0.3 0.31 10.9 0.1 1.7 2 0 0 2 2 2 0 Heat-labile enterotoxin beta chain Ribosomal_L5_C PF00673.16 gi|20089955|ref|NP_616030.1| - 4.3e-27 93.6 0.0 6.3e-27 93.1 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|20089955|ref|NP_616030.1| - 6.7e-13 48.2 0.0 1.3e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|20089956|ref|NP_616031.1| - 4.2e-20 70.8 3.4 4.5e-20 70.7 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.9 gi|20089956|ref|NP_616031.1| - 0.0004 19.8 1.6 0.0005 19.4 1.1 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF4428 PF14471.1 gi|20089956|ref|NP_616031.1| - 0.0005 19.7 0.3 0.0006 19.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) zf-UBR PF02207.15 gi|20089956|ref|NP_616031.1| - 0.018 14.7 0.4 0.019 14.6 0.3 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) DUF2318 PF10080.4 gi|20089956|ref|NP_616031.1| - 0.03 14.1 0.4 0.032 14.0 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Ribosomal_L37ae PF01780.14 gi|20089956|ref|NP_616031.1| - 0.043 13.6 1.6 0.062 13.1 1.1 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family DUF1451 PF07295.6 gi|20089956|ref|NP_616031.1| - 0.053 13.2 0.5 0.062 13.0 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|20089956|ref|NP_616031.1| - 0.071 12.5 3.0 0.11 12.0 2.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF2616 PF11077.3 gi|20089956|ref|NP_616031.1| - 0.092 12.2 0.3 0.088 12.3 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) Rsm1 PF08600.5 gi|20089956|ref|NP_616031.1| - 0.86 9.4 5.1 7.2 6.5 0.3 2.0 1 1 1 2 2 2 0 Rsm1-like zf-C2HC_2 PF13913.1 gi|20089956|ref|NP_616031.1| - 5 6.9 8.5 15 5.3 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF2757 PF10955.3 gi|20089956|ref|NP_616031.1| - 7.2 6.8 6.6 4.6 7.5 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) Ribosomal_S8 PF00410.14 gi|20089957|ref|NP_616032.1| - 1e-24 86.8 0.0 1.4e-24 86.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|20089958|ref|NP_616033.1| - 6.8e-27 93.7 5.2 3.2e-15 56.3 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.13 gi|20089959|ref|NP_616034.1| - 1e-37 128.5 0.0 1.4e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|20089960|ref|NP_616035.1| - 9.4e-59 197.4 6.3 1.1e-58 197.2 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L18p PF00861.17 gi|20089961|ref|NP_616036.1| - 2.8e-27 95.2 0.0 3.4e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|20089962|ref|NP_616037.1| - 8.6e-28 95.8 0.4 1.8e-27 94.8 0.3 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|20089962|ref|NP_616037.1| - 6.1e-25 86.2 0.5 9.9e-25 85.6 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|20089963|ref|NP_616038.1| - 6.1e-21 73.7 0.2 1.2e-20 72.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|20089964|ref|NP_616039.1| - 4e-33 114.5 1.1 4.6e-33 114.3 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|20089965|ref|NP_616040.1| - 1.4e-96 323.4 24.2 1.7e-96 323.2 16.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|20089965|ref|NP_616040.1| - 4.4e-11 42.0 0.9 1.4e-10 40.5 0.6 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p ADK PF00406.17 gi|20089966|ref|NP_616041.1| - 1.4e-60 203.5 0.0 1.7e-60 203.2 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|20089966|ref|NP_616041.1| - 1.8e-15 56.2 1.2 3.2e-15 55.4 0.9 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|20089966|ref|NP_616041.1| - 1.1e-09 39.1 0.0 1.5e-09 38.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|20089966|ref|NP_616041.1| - 0.00027 20.8 0.0 0.00045 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20089966|ref|NP_616041.1| - 0.0014 18.9 0.3 0.0052 17.0 0.1 2.1 2 1 0 2 2 2 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|20089966|ref|NP_616041.1| - 0.011 15.0 0.6 0.018 14.3 0.4 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding AAA PF00004.24 gi|20089966|ref|NP_616041.1| - 0.067 13.3 0.0 0.17 12.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|20089966|ref|NP_616041.1| - 0.077 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|20089966|ref|NP_616041.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.7 2 1 0 2 2 2 0 AAA domain HTH_45 PF14947.1 gi|20089967|ref|NP_616042.1| - 1.3e-06 28.0 0.1 2.1e-06 27.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|20089967|ref|NP_616042.1| - 5.1e-06 26.0 0.1 6.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20089967|ref|NP_616042.1| - 1.2e-05 24.8 0.1 2.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20089967|ref|NP_616042.1| - 1.2e-05 24.8 0.0 2.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20089967|ref|NP_616042.1| - 3e-05 23.7 0.1 3.8e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|20089967|ref|NP_616042.1| - 4.1e-05 23.1 0.3 7.7e-05 22.2 0.2 1.4 1 1 1 2 2 2 1 HxlR-like helix-turn-helix DUF2250 PF10007.4 gi|20089967|ref|NP_616042.1| - 7.5e-05 22.5 0.3 0.00028 20.7 0.2 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|20089967|ref|NP_616042.1| - 8e-05 22.6 0.2 0.00011 22.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|20089967|ref|NP_616042.1| - 0.00055 19.2 0.1 0.00083 18.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|20089967|ref|NP_616042.1| - 0.00056 20.1 0.1 0.00088 19.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|20089967|ref|NP_616042.1| - 0.00057 19.7 0.1 0.00067 19.5 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_Crp_2 PF13545.1 gi|20089967|ref|NP_616042.1| - 0.00061 19.5 0.1 0.00081 19.1 0.1 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|20089967|ref|NP_616042.1| - 0.00068 19.2 0.2 0.0013 18.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.1 gi|20089967|ref|NP_616042.1| - 0.00087 19.3 0.0 0.0017 18.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.1 gi|20089967|ref|NP_616042.1| - 0.00098 18.7 0.1 0.0024 17.5 0.0 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) FeoC PF09012.5 gi|20089967|ref|NP_616042.1| - 0.0014 18.2 0.1 0.002 17.7 0.1 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF505 PF04458.7 gi|20089967|ref|NP_616042.1| - 0.0016 16.6 0.3 0.0018 16.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.9 gi|20089967|ref|NP_616042.1| - 0.0032 17.2 0.1 0.0042 16.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|20089967|ref|NP_616042.1| - 0.0066 16.5 0.1 0.0095 16.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Rio2_N PF09202.6 gi|20089967|ref|NP_616042.1| - 0.0082 16.1 0.1 0.019 15.0 0.0 1.5 1 1 1 2 2 2 1 Rio2, N-terminal DUF3116 PF11313.3 gi|20089967|ref|NP_616042.1| - 0.013 15.0 0.4 0.019 14.5 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) Phage_rep_org_N PF09681.5 gi|20089967|ref|NP_616042.1| - 0.016 14.7 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TFIIE_alpha PF02002.12 gi|20089967|ref|NP_616042.1| - 0.02 14.3 0.5 0.026 14.0 0.3 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.15 gi|20089967|ref|NP_616042.1| - 0.036 13.7 0.1 0.062 12.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|20089967|ref|NP_616042.1| - 0.064 12.9 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_DeoR PF08220.7 gi|20089967|ref|NP_616042.1| - 0.067 12.7 0.2 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF1495 PF07381.6 gi|20089967|ref|NP_616042.1| - 0.067 12.8 0.2 0.87 9.2 0.2 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_28 PF13518.1 gi|20089967|ref|NP_616042.1| - 0.092 12.7 0.1 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|20089967|ref|NP_616042.1| - 0.094 12.1 0.0 0.13 11.7 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.5 gi|20089967|ref|NP_616042.1| - 0.12 11.9 0.1 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Hexapep PF00132.19 gi|20089968|ref|NP_616043.1| - 1.3e-15 56.1 12.9 1.4e-07 30.6 0.7 4.5 5 0 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20089968|ref|NP_616043.1| - 0.00074 19.0 13.7 0.076 12.5 0.1 4.3 3 2 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase DUF188 PF02639.9 gi|20089968|ref|NP_616043.1| - 0.0039 16.6 0.0 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 Fucokinase PF07959.7 gi|20089968|ref|NP_616043.1| - 0.015 13.8 1.4 0.034 12.7 0.7 1.6 1 1 0 1 1 1 0 L-fucokinase DUF3073 PF11273.3 gi|20089969|ref|NP_616044.1| - 0.013 15.9 9.9 3.9 8.0 0.3 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3073) IncA PF04156.9 gi|20089969|ref|NP_616044.1| - 7.9 6.0 34.4 0.88 9.1 9.5 4.0 2 2 1 3 3 3 0 IncA protein MerR-DNA-bind PF09278.6 gi|20089970|ref|NP_616045.1| - 0.004 17.5 0.0 0.0044 17.3 0.0 1.1 1 0 0 1 1 1 1 MerR, DNA binding Prok-TraM PF09228.5 gi|20089970|ref|NP_616045.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic Transcriptional repressor TraM FGE-sulfatase PF03781.11 gi|20089971|ref|NP_616046.1| - 3.2e-39 134.8 3.5 2.2e-38 132.1 2.4 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF106 PF01956.11 gi|20089972|ref|NP_616047.1| - 1.1e-46 158.4 6.1 1.3e-46 158.1 4.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|20089972|ref|NP_616047.1| - 0.00034 20.3 9.2 0.00066 19.3 6.4 1.5 1 1 0 1 1 1 1 60Kd inner membrane protein DUF4446 PF14584.1 gi|20089972|ref|NP_616047.1| - 0.39 10.5 3.2 0.6 9.9 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Spore_III_AF PF09581.5 gi|20089972|ref|NP_616047.1| - 0.7 9.7 4.1 0.69 9.7 1.9 1.6 1 1 1 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) Cytidylate_kin2 PF13189.1 gi|20089973|ref|NP_616048.1| - 2.9e-23 82.7 0.5 1.2e-22 80.7 0.3 1.7 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|20089973|ref|NP_616048.1| - 3.6e-12 46.6 0.1 5.3e-12 46.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|20089973|ref|NP_616048.1| - 3.6e-11 43.9 0.2 1.4e-10 42.0 0.0 1.7 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|20089973|ref|NP_616048.1| - 0.00012 21.9 0.3 0.00035 20.4 0.2 1.7 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|20089973|ref|NP_616048.1| - 0.00053 19.8 0.0 0.0013 18.6 0.0 1.6 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.1 gi|20089973|ref|NP_616048.1| - 0.0025 17.6 0.0 0.052 13.4 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|20089973|ref|NP_616048.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF276 PF03434.8 gi|20089973|ref|NP_616048.1| - 0.042 12.8 0.4 0.065 12.1 0.3 1.3 1 0 0 1 1 1 0 DUF276 dNK PF01712.14 gi|20089973|ref|NP_616048.1| - 0.077 12.9 0.3 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 Deoxynucleoside kinase RHH_1 PF01402.16 gi|20089973|ref|NP_616048.1| - 0.14 12.0 2.0 7.8 6.5 0.0 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family TruB_N PF01509.13 gi|20089974|ref|NP_616049.1| - 8.4e-23 81.1 1.4 1.5e-12 47.9 0.1 3.5 2 1 1 3 3 3 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|20089974|ref|NP_616049.1| - 1.7e-22 79.1 0.1 3.9e-22 77.9 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|20089974|ref|NP_616049.1| - 6.6e-17 61.0 0.1 1.4e-16 59.9 0.0 1.6 1 0 0 1 1 1 1 PUA domain ABC_tran PF00005.22 gi|20089975|ref|NP_616050.1| - 1.9e-19 70.3 0.0 2.8e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089975|ref|NP_616050.1| - 1.1e-07 32.0 6.8 5.3e-05 23.3 4.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|20089975|ref|NP_616050.1| - 0.00027 21.3 0.2 0.00056 20.2 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20089975|ref|NP_616050.1| - 0.0045 16.4 0.0 0.0083 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|20089975|ref|NP_616050.1| - 0.0046 16.0 4.3 0.17 10.9 0.3 2.2 1 1 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|20089975|ref|NP_616050.1| - 0.05 12.7 0.0 0.087 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|20089975|ref|NP_616050.1| - 0.058 12.2 0.0 0.12 11.2 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Arch_ATPase PF01637.13 gi|20089975|ref|NP_616050.1| - 0.088 12.4 0.9 0.18 11.4 0.0 1.9 2 1 0 2 2 2 0 Archaeal ATPase AAA_10 PF12846.2 gi|20089975|ref|NP_616050.1| - 0.091 12.1 0.0 0.43 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|20089975|ref|NP_616050.1| - 0.11 11.6 0.4 0.18 10.9 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|20089975|ref|NP_616050.1| - 0.29 9.5 2.1 0.68 8.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain Ribosomal_S13 PF00416.17 gi|20089977|ref|NP_616052.1| - 8.9e-30 103.2 0.0 1.2e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH PF00633.18 gi|20089977|ref|NP_616052.1| - 0.014 15.1 0.2 0.034 13.8 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|20089977|ref|NP_616052.1| - 0.077 13.0 0.1 0.17 12.0 0.1 1.6 1 0 0 1 1 1 0 IMS family HHH motif S4 PF01479.20 gi|20089978|ref|NP_616053.1| - 1e-14 53.6 0.2 9.1e-14 50.6 0.0 2.4 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|20089978|ref|NP_616053.1| - 0.079 13.3 0.4 0.079 13.3 0.2 2.4 3 0 0 3 3 3 0 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|20089979|ref|NP_616054.1| - 1.1e-42 144.6 1.2 1.3e-42 144.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|20089979|ref|NP_616054.1| - 0.1 12.0 0.3 0.18 11.2 0.2 1.4 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Radical_SAM PF04055.16 gi|20089980|ref|NP_616055.1| - 1.7e-14 54.3 3.3 3e-13 50.2 1.7 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20089980|ref|NP_616055.1| - 2.1e-07 30.9 0.1 2.1e-07 30.9 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20089980|ref|NP_616055.1| - 7.5e-07 29.3 1.6 2.6e-06 27.5 0.0 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain zf-Di19 PF05605.7 gi|20089980|ref|NP_616055.1| - 2.6 8.2 7.2 16 5.6 3.0 2.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding rve PF00665.21 gi|20089982|ref|NP_616057.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089982|ref|NP_616057.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20089982|ref|NP_616057.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20089982|ref|NP_616057.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20089982|ref|NP_616057.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20089982|ref|NP_616057.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Cation_efflux PF01545.16 gi|20089983|ref|NP_616058.1| - 4.8e-64 216.1 2.6 5.9e-64 215.8 1.8 1.0 1 0 0 1 1 1 1 Cation efflux family DUF998 PF06197.8 gi|20089983|ref|NP_616058.1| - 0.0097 15.2 0.9 0.018 14.3 0.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MacB_PCD PF12704.2 gi|20089984|ref|NP_616059.1| - 9.1e-46 156.3 2.5 9.1e-46 156.3 1.7 3.0 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|20089984|ref|NP_616059.1| - 4.8e-23 81.2 14.2 4.2e-22 78.1 6.8 2.3 2 0 0 2 2 2 2 FtsX-like permease family DUF4134 PF13572.1 gi|20089984|ref|NP_616059.1| - 0.016 15.2 1.2 0.016 15.2 0.9 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4134) Yip1 PF04893.12 gi|20089984|ref|NP_616059.1| - 0.52 9.7 12.7 1.7 8.1 6.5 2.3 2 0 0 2 2 2 0 Yip1 domain NPCBM_assoc PF10633.4 gi|20089985|ref|NP_616060.1| - 3.3e-13 49.4 0.8 6.9e-06 26.0 0.0 3.9 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|20089985|ref|NP_616060.1| - 6.4e-10 38.9 15.4 0.011 15.7 1.9 4.0 2 1 1 3 3 3 3 CARDB DUF11 PF01345.13 gi|20089985|ref|NP_616060.1| - 5e-08 32.8 10.2 7.9e-05 22.6 0.5 3.8 3 0 0 3 3 3 2 Domain of unknown function DUF11 A2M PF00207.17 gi|20089985|ref|NP_616060.1| - 0.0085 15.6 1.0 0.12 11.9 0.0 3.3 2 1 2 4 4 4 1 Alpha-2-macroglobulin family DUF2393 PF09624.5 gi|20089985|ref|NP_616060.1| - 0.039 13.4 4.2 0.11 12.0 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2393) TRAP_beta PF05753.9 gi|20089985|ref|NP_616060.1| - 0.15 11.2 6.9 3.9 6.6 0.1 3.2 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) EMP24_GP25L PF01105.19 gi|20089985|ref|NP_616060.1| - 0.38 10.4 3.3 0.26 10.9 0.1 2.3 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD ABC_tran PF00005.22 gi|20089986|ref|NP_616061.1| - 2.8e-32 111.8 0.0 4.9e-32 111.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089986|ref|NP_616061.1| - 1.4e-12 48.2 4.6 6.2e-08 32.9 0.2 2.6 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|20089986|ref|NP_616061.1| - 8.5e-08 31.6 0.0 3.8e-07 29.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20089986|ref|NP_616061.1| - 6.1e-05 22.2 0.3 0.0058 15.7 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|20089986|ref|NP_616061.1| - 0.00017 22.3 0.3 0.00097 19.9 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20089986|ref|NP_616061.1| - 0.00025 21.3 0.0 0.089 13.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20089986|ref|NP_616061.1| - 0.00041 19.8 0.0 0.00078 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|20089986|ref|NP_616061.1| - 0.00056 19.4 0.0 0.00094 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|20089986|ref|NP_616061.1| - 0.00099 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|20089986|ref|NP_616061.1| - 0.0012 17.3 0.5 0.31 9.4 0.0 2.4 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|20089986|ref|NP_616061.1| - 0.0023 17.9 0.6 0.0069 16.3 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|20089986|ref|NP_616061.1| - 0.0024 17.7 0.0 0.0086 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20089986|ref|NP_616061.1| - 0.0039 17.3 0.1 0.028 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20089986|ref|NP_616061.1| - 0.0042 16.5 0.0 0.014 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|20089986|ref|NP_616061.1| - 0.0052 16.5 0.2 0.022 14.4 0.0 2.3 1 1 0 1 1 1 1 Archaeal ATPase SRPRB PF09439.5 gi|20089986|ref|NP_616061.1| - 0.0091 15.2 0.4 5.9 6.0 0.0 3.2 4 0 0 4 4 4 1 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.18 gi|20089986|ref|NP_616061.1| - 0.0094 15.8 0.5 0.036 14.0 0.3 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|20089986|ref|NP_616061.1| - 0.036 14.3 0.0 0.036 14.3 0.0 2.3 3 1 0 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|20089986|ref|NP_616061.1| - 0.065 13.4 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|20089986|ref|NP_616061.1| - 0.066 13.0 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain MatE PF01554.13 gi|20089987|ref|NP_616062.1| - 3.4e-52 176.3 40.7 7.2e-29 100.4 7.7 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|20089987|ref|NP_616062.1| - 2.4e-09 37.1 27.2 2.8e-08 33.6 9.2 4.4 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|20089987|ref|NP_616062.1| - 8.2e-05 21.9 32.4 0.31 10.2 9.8 3.2 1 1 2 3 3 3 3 Polysaccharide biosynthesis protein MarR PF01047.17 gi|20089988|ref|NP_616063.1| - 1.3e-14 53.6 0.0 2.1e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|20089988|ref|NP_616063.1| - 1.9e-13 49.8 0.0 3.6e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20089988|ref|NP_616063.1| - 6.7e-07 28.5 0.0 1.4e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|20089988|ref|NP_616063.1| - 1.7e-06 28.2 0.0 2.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|20089988|ref|NP_616063.1| - 2.4e-06 27.3 0.0 4.1e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|20089988|ref|NP_616063.1| - 1.7e-05 24.3 0.1 4e-05 23.1 0.0 1.6 2 0 0 2 2 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|20089988|ref|NP_616063.1| - 3.3e-05 23.6 0.0 6.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|20089988|ref|NP_616063.1| - 3.8e-05 23.3 0.3 0.0001 21.9 0.2 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|20089988|ref|NP_616063.1| - 0.00013 21.9 0.1 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.6 gi|20089988|ref|NP_616063.1| - 0.00015 22.1 0.0 0.00024 21.4 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_36 PF13730.1 gi|20089988|ref|NP_616063.1| - 0.00063 19.8 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20089988|ref|NP_616063.1| - 0.00064 19.8 0.0 0.00093 19.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.16 gi|20089988|ref|NP_616063.1| - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|20089988|ref|NP_616063.1| - 0.0028 17.1 0.5 0.0038 16.7 0.4 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|20089988|ref|NP_616063.1| - 0.0062 16.1 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.12 gi|20089988|ref|NP_616063.1| - 0.013 15.1 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Mga PF05043.8 gi|20089988|ref|NP_616063.1| - 0.021 15.0 0.1 0.036 14.3 0.1 1.5 1 1 0 1 1 1 0 Mga helix-turn-helix domain PadR PF03551.9 gi|20089988|ref|NP_616063.1| - 0.022 14.4 1.3 0.042 13.6 0.6 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|20089988|ref|NP_616063.1| - 0.032 14.0 0.0 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|20089988|ref|NP_616063.1| - 0.033 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Replic_Relax PF13814.1 gi|20089988|ref|NP_616063.1| - 0.034 13.9 0.1 0.048 13.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation ANT PF03374.9 gi|20089988|ref|NP_616063.1| - 0.05 13.6 0.1 0.088 12.8 0.1 1.4 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_23 PF13384.1 gi|20089988|ref|NP_616063.1| - 0.051 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.15 gi|20089988|ref|NP_616063.1| - 0.068 13.3 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Trp_repressor PF01371.14 gi|20089988|ref|NP_616063.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Trp repressor protein DUF418 PF04235.7 gi|20089989|ref|NP_616064.1| - 0.046 13.3 0.5 0.084 12.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF418) CLN6 PF15156.1 gi|20089990|ref|NP_616065.1| - 0.025 13.6 0.1 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Ceroid-lipofuscinosis neuronal protein 6 rve PF00665.21 gi|20089991|ref|NP_616066.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20089991|ref|NP_616066.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20089991|ref|NP_616066.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20089991|ref|NP_616066.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20089991|ref|NP_616066.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20089991|ref|NP_616066.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Mpv17_PMP22 PF04117.7 gi|20089992|ref|NP_616067.1| - 0.003 17.1 0.2 23 4.7 0.0 5.2 6 0 0 6 6 6 1 Mpv17 / PMP22 family SPASM PF13186.1 gi|20089992|ref|NP_616067.1| - 1.9 8.8 12.0 1.5e+02 2.8 0.0 5.9 6 0 0 6 6 6 0 Iron-sulfur cluster-binding domain Methyltransf_18 PF12847.2 gi|20089993|ref|NP_616068.1| - 3.1e-13 50.2 0.0 5e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20089993|ref|NP_616068.1| - 2.6e-11 43.3 0.0 3.6e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20089993|ref|NP_616068.1| - 2.7e-10 39.7 0.0 7.4e-10 38.2 0.0 1.7 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|20089993|ref|NP_616068.1| - 1e-09 38.7 0.0 1.8e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20089993|ref|NP_616068.1| - 1.6e-08 34.9 0.0 3.5e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20089993|ref|NP_616068.1| - 9.6e-08 32.3 0.0 1.6e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20089993|ref|NP_616068.1| - 7.7e-07 28.9 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20089993|ref|NP_616068.1| - 1.6e-06 27.6 0.0 5.1e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|20089993|ref|NP_616068.1| - 2.3e-06 27.2 0.0 3.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|20089993|ref|NP_616068.1| - 7.3e-06 25.2 0.0 7.3e-06 25.2 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20089993|ref|NP_616068.1| - 8.5e-06 25.7 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|20089993|ref|NP_616068.1| - 1.7e-05 24.0 0.0 2.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G DREV PF05219.7 gi|20089993|ref|NP_616068.1| - 3.5e-05 22.8 0.0 5.8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase TehB PF03848.9 gi|20089993|ref|NP_616068.1| - 0.00013 21.2 0.3 0.00036 19.7 0.0 1.8 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|20089993|ref|NP_616068.1| - 0.00023 20.7 0.0 0.0018 17.8 0.0 2.1 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|20089993|ref|NP_616068.1| - 0.0015 18.2 0.2 0.0036 16.9 0.0 1.8 2 1 0 2 2 2 1 Met-10+ like-protein PrmA PF06325.8 gi|20089993|ref|NP_616068.1| - 0.0036 16.4 0.0 0.0067 15.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|20089993|ref|NP_616068.1| - 0.004 16.6 0.0 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|20089993|ref|NP_616068.1| - 0.0077 14.9 0.0 0.013 14.2 0.0 1.4 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.15 gi|20089993|ref|NP_616068.1| - 0.0088 15.1 0.0 0.016 14.2 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|20089993|ref|NP_616068.1| - 0.012 15.0 0.1 0.024 14.0 0.0 1.6 2 0 0 2 2 2 0 Nodulation protein S (NodS) Rsm22 PF09243.5 gi|20089993|ref|NP_616068.1| - 0.039 12.9 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Cons_hypoth95 PF03602.10 gi|20089993|ref|NP_616068.1| - 0.066 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MetW PF07021.7 gi|20089993|ref|NP_616068.1| - 0.095 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Peripla_BP_2 PF01497.13 gi|20089994|ref|NP_616069.1| - 8.8e-22 77.3 0.0 1.4e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF4458 PF14660.1 gi|20089994|ref|NP_616069.1| - 0.059 13.3 0.3 0.27 11.2 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4458) DsbD PF02683.10 gi|20089995|ref|NP_616070.1| - 8.6e-15 54.9 19.3 1.3e-14 54.2 13.3 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|20089995|ref|NP_616070.1| - 0.0077 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain COX14 PF14880.1 gi|20089995|ref|NP_616070.1| - 0.31 10.6 1.7 0.94 9.1 1.2 1.8 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Peripla_BP_2 PF01497.13 gi|20089996|ref|NP_616071.1| - 2.8e-24 85.5 0.0 4.4e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Phi-29_GP16_7 PF06720.6 gi|20089996|ref|NP_616071.1| - 0.027 14.1 0.3 0.31 10.7 0.0 2.4 2 0 0 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 MCR_C PF04609.7 gi|20089996|ref|NP_616071.1| - 0.069 11.9 0.2 0.15 10.8 0.0 1.5 2 0 0 2 2 2 0 Methyl-coenzyme M reductase operon protein C FecCD PF01032.13 gi|20089997|ref|NP_616072.1| - 6.5e-94 314.2 26.3 8.1e-94 313.9 18.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20089997|ref|NP_616072.1| - 8.2e-07 28.5 20.6 8.2e-07 28.5 14.3 2.2 2 1 0 2 2 2 1 ABC 3 transport family DUF1049 PF06305.6 gi|20089997|ref|NP_616072.1| - 0.3 10.5 0.1 0.3 10.5 0.1 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1049) NapE PF06796.6 gi|20089997|ref|NP_616072.1| - 2 7.8 7.0 0.76 9.1 1.9 2.5 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE ABC_tran PF00005.22 gi|20089998|ref|NP_616073.1| - 9.5e-31 106.9 0.0 1.2e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20089998|ref|NP_616073.1| - 1.8e-14 54.3 0.0 8.8e-08 32.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20089998|ref|NP_616073.1| - 1.6e-10 40.5 0.0 4.1e-09 35.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20089998|ref|NP_616073.1| - 0.00024 21.4 0.3 0.00038 20.8 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20089998|ref|NP_616073.1| - 0.00046 19.6 0.0 0.0024 17.3 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.24 gi|20089998|ref|NP_616073.1| - 0.0079 16.3 0.0 0.021 15.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Pox_G5 PF04599.7 gi|20089998|ref|NP_616073.1| - 0.067 11.8 0.0 0.096 11.3 0.0 1.2 1 0 0 1 1 1 0 Poxvirus G5 protein AAA_16 PF13191.1 gi|20089998|ref|NP_616073.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|20089998|ref|NP_616073.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|20089998|ref|NP_616073.1| - 0.12 10.7 0.1 0.18 10.2 0.1 1.1 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|20089998|ref|NP_616073.1| - 0.13 10.8 0.1 0.41 9.1 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|20089998|ref|NP_616073.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|20089998|ref|NP_616073.1| - 0.14 11.8 0.0 0.41 10.3 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B GyrI-like PF06445.10 gi|20089999|ref|NP_616074.1| - 5.1e-38 130.5 1.2 6.2e-38 130.2 0.8 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain EntA_Immun PF08951.5 gi|20089999|ref|NP_616074.1| - 0.45 10.6 0.2 0.45 10.6 0.1 2.4 3 0 0 3 3 3 0 Enterocin A Immunity Hexapep PF00132.19 gi|20090000|ref|NP_616075.1| - 6e-21 72.9 14.5 2.5e-10 39.4 0.7 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20090000|ref|NP_616075.1| - 2.1e-10 39.9 12.4 5.2e-07 29.1 1.5 3.3 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase DUF1771 PF08590.5 gi|20090000|ref|NP_616075.1| - 0.023 14.7 1.1 0.076 13.0 1.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) AIRS_C PF02769.17 gi|20090002|ref|NP_616077.1| - 2.2e-28 99.1 0.2 3.1e-28 98.7 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|20090002|ref|NP_616077.1| - 5.9e-15 55.2 0.0 1.3e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain cobW PF02492.14 gi|20090003|ref|NP_616078.1| - 3.8e-37 127.4 1.3 4.6e-37 127.1 0.9 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|20090003|ref|NP_616078.1| - 8.6e-06 24.7 1.6 0.007 15.1 0.3 2.1 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|20090003|ref|NP_616078.1| - 2.1e-05 24.2 0.1 4.4e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|20090003|ref|NP_616078.1| - 0.0003 21.1 0.1 0.00057 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20090003|ref|NP_616078.1| - 0.00039 20.4 0.0 0.00055 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|20090003|ref|NP_616078.1| - 0.00087 19.0 0.1 0.0021 17.8 0.1 1.7 1 1 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|20090003|ref|NP_616078.1| - 0.0015 19.3 0.1 0.003 18.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|20090003|ref|NP_616078.1| - 0.0024 17.6 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase SRP54 PF00448.17 gi|20090003|ref|NP_616078.1| - 0.0039 16.6 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|20090003|ref|NP_616078.1| - 0.0064 16.0 0.1 0.014 14.9 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Pox_A32 PF04665.7 gi|20090003|ref|NP_616078.1| - 0.014 14.7 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein NB-ARC PF00931.17 gi|20090003|ref|NP_616078.1| - 0.015 14.2 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.1 gi|20090003|ref|NP_616078.1| - 0.023 14.8 0.1 0.073 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|20090003|ref|NP_616078.1| - 0.028 13.8 1.7 0.067 12.5 1.2 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|20090003|ref|NP_616078.1| - 0.042 13.7 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|20090003|ref|NP_616078.1| - 0.063 12.7 0.4 0.67 9.3 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.4 gi|20090003|ref|NP_616078.1| - 0.066 11.8 0.1 0.1 11.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|20090003|ref|NP_616078.1| - 0.068 12.0 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Miro PF08477.8 gi|20090003|ref|NP_616078.1| - 0.068 13.6 0.1 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein AAA_14 PF13173.1 gi|20090003|ref|NP_616078.1| - 0.089 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF497 PF04365.8 gi|20090003|ref|NP_616078.1| - 0.11 12.4 0.1 0.33 10.8 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF497) AAA_29 PF13555.1 gi|20090003|ref|NP_616078.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HypA PF01155.14 gi|20090004|ref|NP_616079.1| - 1.5e-29 101.9 1.7 1.8e-29 101.7 1.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family HypD PF01924.11 gi|20090005|ref|NP_616080.1| - 4e-140 466.5 0.0 4.9e-140 466.3 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.13 gi|20090006|ref|NP_616081.1| - 1e-22 79.8 0.2 1.2e-22 79.6 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family Oxidored_q6 PF01058.17 gi|20090007|ref|NP_616082.1| - 5.1e-31 106.9 0.1 9.2e-31 106.1 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.1 gi|20090007|ref|NP_616082.1| - 8.6e-31 105.8 5.4 8.4e-30 102.6 2.0 2.4 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal TAT_signal PF10518.4 gi|20090007|ref|NP_616082.1| - 0.013 15.4 1.3 0.013 15.4 0.9 2.9 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.14 gi|20090008|ref|NP_616083.1| - 2.6e-81 273.9 0.0 4.8e-51 174.0 0.0 3.1 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Cytochrom_B_N PF00033.14 gi|20090009|ref|NP_616084.1| - 3e-06 26.7 21.5 3.8e-05 23.1 14.9 2.1 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|20090009|ref|NP_616084.1| - 0.00089 18.6 20.8 0.0025 17.2 14.4 1.7 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.1 gi|20090009|ref|NP_616084.1| - 0.028 14.5 17.3 1.2 9.3 0.7 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) HycI PF01750.13 gi|20090010|ref|NP_616085.1| - 1.9e-27 95.3 2.1 2.3e-27 95.1 1.5 1.0 1 0 0 1 1 1 1 Hydrogenase maturation protease PG_binding_1 PF01471.13 gi|20090011|ref|NP_616086.1| - 5.8e-14 51.8 0.0 1.5e-13 50.5 0.0 1.7 2 0 0 2 2 2 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.5 gi|20090011|ref|NP_616086.1| - 3e-05 23.8 0.2 0.044 13.7 0.0 2.3 1 1 1 2 2 2 2 Predicted Peptidoglycan domain NiFe_hyd_SSU_C PF14720.1 gi|20090012|ref|NP_616087.1| - 5e-29 100.1 3.7 1.1e-28 99.0 1.6 2.0 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|20090012|ref|NP_616087.1| - 2.9e-27 94.8 0.0 4.2e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.4 gi|20090012|ref|NP_616087.1| - 0.49 10.5 0.1 0.49 10.5 0.1 2.9 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.14 gi|20090013|ref|NP_616088.1| - 3.4e-80 270.2 0.1 2.5e-50 171.7 0.0 3.1 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Cytochrom_B_N PF00033.14 gi|20090014|ref|NP_616089.1| - 4.8e-10 39.0 21.5 4e-09 36.1 14.9 1.9 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|20090014|ref|NP_616089.1| - 5.8e-05 22.5 20.2 0.0002 20.7 14.0 1.7 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.1 gi|20090014|ref|NP_616089.1| - 0.02 15.0 21.8 0.14 12.3 2.5 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) DUF3594 PF12165.3 gi|20090014|ref|NP_616089.1| - 0.078 12.6 0.5 1.3 8.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3594) PsbN PF02468.10 gi|20090014|ref|NP_616089.1| - 0.9 9.2 3.0 3.1 7.4 0.1 2.4 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) MEDS PF14417.1 gi|20090015|ref|NP_616090.1| - 5.1e-55 185.5 0.0 8.5e-55 184.7 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20090015|ref|NP_616090.1| - 1.8e-33 115.0 0.1 7.2e-14 52.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|20090015|ref|NP_616090.1| - 2.1e-32 111.1 0.1 4.4e-32 110.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|20090015|ref|NP_616090.1| - 1.3e-25 89.5 0.0 4.6e-10 39.4 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|20090015|ref|NP_616090.1| - 1.2e-23 82.9 0.0 2.4e-10 40.1 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|20090015|ref|NP_616090.1| - 6.1e-21 73.4 0.0 3.9e-07 29.7 0.0 3.6 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|20090015|ref|NP_616090.1| - 4.2e-17 61.9 0.0 1e-16 60.6 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|20090015|ref|NP_616090.1| - 1.4e-05 24.6 0.0 4.3e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|20090015|ref|NP_616090.1| - 0.0032 17.1 0.0 0.0086 15.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|20090015|ref|NP_616090.1| - 0.0062 16.5 0.0 10 6.1 0.0 3.7 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|20090015|ref|NP_616090.1| - 0.0063 16.2 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|20090015|ref|NP_616090.1| - 0.055 13.5 0.0 3.5 7.7 0.0 3.5 3 0 0 3 3 3 0 PAS fold CGI-121 PF08617.5 gi|20090016|ref|NP_616091.1| - 8.9e-25 87.2 0.0 1e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 GATase PF00117.23 gi|20090017|ref|NP_616092.1| - 2.9e-17 62.7 0.0 4.3e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|20090017|ref|NP_616092.1| - 2.2e-05 23.9 0.0 0.00066 19.1 0.0 2.1 2 0 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|20090017|ref|NP_616092.1| - 0.0043 16.6 0.0 0.0077 15.8 0.0 1.6 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain FBPase_glpX PF03320.8 gi|20090018|ref|NP_616093.1| - 1.1e-115 385.5 6.6 1.2e-115 385.3 4.6 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Oxidored_nitro PF00148.14 gi|20090018|ref|NP_616093.1| - 0.033 12.8 0.5 0.064 11.8 0.1 1.6 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Radical_SAM PF04055.16 gi|20090019|ref|NP_616094.1| - 4.8e-23 82.1 0.1 8.7e-22 78.0 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|20090019|ref|NP_616094.1| - 1.5e-17 63.2 0.1 3.4e-17 62.0 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|20090019|ref|NP_616094.1| - 2.5e-06 27.1 0.0 4.6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 TRAM domain M20_dimer PF07687.9 gi|20090019|ref|NP_616094.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Peptidase dimerisation domain RE_AlwI PF09491.5 gi|20090019|ref|NP_616094.1| - 0.12 10.7 0.2 0.23 9.8 0.1 1.4 1 0 0 1 1 1 0 AlwI restriction endonuclease Fer4_12 PF13353.1 gi|20090019|ref|NP_616094.1| - 0.16 12.1 2.0 0.75 9.9 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-C4_ClpX PF06689.8 gi|20090019|ref|NP_616094.1| - 0.27 10.8 0.1 0.27 10.8 0.1 2.7 3 0 0 3 3 3 0 ClpX C4-type zinc finger RAI1 PF08652.6 gi|20090020|ref|NP_616095.1| - 0.033 13.9 1.2 0.048 13.4 0.8 1.1 1 0 0 1 1 1 0 RAI1 like PD-(D/E)XK nuclease Gram_pos_anchor PF00746.16 gi|20090022|ref|NP_616097.1| - 0.0082 15.9 1.6 0.015 15.0 1.1 1.5 1 0 0 1 1 1 1 Gram positive anchor DIM PF08194.7 gi|20090022|ref|NP_616097.1| - 6.6 6.7 9.4 66 3.5 4.6 2.8 2 0 0 2 2 2 0 DIM protein Rubrerythrin PF02915.12 gi|20090023|ref|NP_616098.1| - 4.1e-25 88.6 5.3 5e-25 88.4 3.7 1.1 1 0 0 1 1 1 1 Rubrerythrin Rubredoxin PF00301.15 gi|20090023|ref|NP_616098.1| - 0.0024 17.7 4.6 0.049 13.5 3.2 2.3 1 1 0 1 1 1 1 Rubredoxin Ferritin PF00210.19 gi|20090023|ref|NP_616098.1| - 0.011 15.5 3.4 0.014 15.1 2.3 1.4 1 1 0 1 1 1 0 Ferritin-like domain DZR PF12773.2 gi|20090023|ref|NP_616098.1| - 0.022 14.5 0.2 0.035 13.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|20090023|ref|NP_616098.1| - 0.11 12.0 3.5 0.92 9.0 0.2 2.3 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C3HC4_3 PF13920.1 gi|20090023|ref|NP_616098.1| - 0.13 11.9 0.3 0.19 11.4 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|20090023|ref|NP_616098.1| - 0.27 11.0 2.0 0.47 10.2 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|20090023|ref|NP_616098.1| - 0.29 10.3 1.7 7.2 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|20090023|ref|NP_616098.1| - 1.6 8.8 3.5 1.6 8.8 0.1 2.5 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acetyltransf_3 PF13302.1 gi|20090024|ref|NP_616099.1| - 2.2e-27 95.9 0.1 2.6e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20090024|ref|NP_616099.1| - 2.6e-06 27.3 0.0 4.4e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|20090024|ref|NP_616099.1| - 8.1e-05 22.6 1.2 0.0001 22.2 0.8 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20090024|ref|NP_616099.1| - 0.00059 19.5 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20090024|ref|NP_616099.1| - 0.0032 17.3 0.0 0.0073 16.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20090024|ref|NP_616099.1| - 0.11 12.6 0.1 0.51 10.5 0.0 2.2 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain MFS_1 PF07690.11 gi|20090027|ref|NP_616102.1| - 3e-34 118.2 62.8 5.7e-31 107.5 21.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|20090027|ref|NP_616102.1| - 9.3e-13 47.1 17.8 1.2e-12 46.7 12.3 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector DUF1228 PF06779.9 gi|20090027|ref|NP_616102.1| - 2.6 8.1 11.1 0.057 13.4 1.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1228) Abi PF02517.11 gi|20090028|ref|NP_616103.1| - 6.7e-14 51.7 14.0 6.7e-14 51.7 9.7 2.7 1 1 0 2 2 2 1 CAAX protease self-immunity TPPK_C PF12555.3 gi|20090028|ref|NP_616103.1| - 0.33 10.6 0.0 0.33 10.6 0.0 3.0 4 0 0 4 4 4 0 Thiamine pyrophosphokinase C terminal Metallophos PF00149.23 gi|20090029|ref|NP_616104.1| - 1.7e-15 56.9 0.3 3.6e-15 55.8 0.2 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|20090029|ref|NP_616104.1| - 1.4e-11 44.4 0.0 2.9e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.14 gi|20090030|ref|NP_616105.1| - 3.5e-16 59.1 18.1 8.7e-16 57.8 12.5 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|20090030|ref|NP_616105.1| - 2.2e-11 44.2 7.5 4.7e-07 30.0 0.4 3.3 2 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|20090030|ref|NP_616105.1| - 2.5e-07 31.2 53.7 2.5e-07 31.2 37.2 6.8 1 1 2 4 4 4 1 AAA domain AAA_29 PF13555.1 gi|20090030|ref|NP_616105.1| - 7e-05 22.2 0.0 0.00014 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|20090030|ref|NP_616105.1| - 0.00027 20.7 0.0 0.00071 19.4 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF4201 PF13870.1 gi|20090030|ref|NP_616105.1| - 0.0013 18.2 18.9 0.0013 18.2 13.1 7.1 2 1 5 7 7 7 1 Domain of unknown function (DUF4201) DUF3763 PF12592.3 gi|20090030|ref|NP_616105.1| - 0.039 13.5 5.4 0.28 10.8 0.0 4.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3763) AAA_13 PF13166.1 gi|20090030|ref|NP_616105.1| - 0.043 12.2 90.7 0.042 12.3 12.3 6.2 3 1 3 6 6 6 0 AAA domain Reo_sigmaC PF04582.7 gi|20090030|ref|NP_616105.1| - 0.095 11.8 22.9 0.069 12.3 0.3 5.0 3 2 1 5 5 5 0 Reovirus sigma C capsid protein TPD PF14811.1 gi|20090031|ref|NP_616106.1| - 7.1e-48 161.6 0.2 1.1e-47 161.0 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif Pribosyltran_N PF13793.1 gi|20090033|ref|NP_616108.1| - 3.6e-27 94.3 0.0 1.6e-25 89.0 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|20090033|ref|NP_616108.1| - 5.7e-14 51.9 0.3 1.5e-13 50.5 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|20090033|ref|NP_616108.1| - 3.5e-08 33.4 0.7 5.7e-08 32.7 0.5 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|20090033|ref|NP_616108.1| - 2.6e-05 23.5 0.1 4.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|20090033|ref|NP_616108.1| - 0.00013 21.3 0.1 0.003 16.8 0.1 2.1 1 1 1 2 2 2 1 Phosphoribosyl transferase MoaC PF01967.16 gi|20090034|ref|NP_616109.1| - 8.4e-50 167.9 3.9 9.5e-50 167.7 2.7 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|20090036|ref|NP_616111.1| - 1.1e-51 175.4 0.5 1.5e-51 174.9 0.4 1.1 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|20090036|ref|NP_616111.1| - 1.8e-41 141.5 1.3 2.9e-40 137.6 0.0 2.2 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|20090036|ref|NP_616111.1| - 1.8e-09 37.1 0.3 1.6e-08 34.0 0.1 2.1 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family TrkA_N PF02254.13 gi|20090037|ref|NP_616112.1| - 2.3e-24 85.6 0.0 5.4e-24 84.4 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|20090037|ref|NP_616112.1| - 1.5e-16 60.3 1.1 2.9e-15 56.1 0.1 2.3 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|20090037|ref|NP_616112.1| - 9.3e-12 44.4 0.1 2.5e-11 43.0 0.1 1.8 1 0 0 1 1 1 1 DHHA1 domain Methyltransf_31 PF13847.1 gi|20090037|ref|NP_616112.1| - 5.8e-05 22.7 0.1 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NAD_Gly3P_dh_N PF01210.18 gi|20090037|ref|NP_616112.1| - 0.00058 19.6 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|20090037|ref|NP_616112.1| - 0.0007 19.0 0.0 0.0014 18.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|20090037|ref|NP_616112.1| - 0.0011 19.2 0.0 0.0031 17.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|20090037|ref|NP_616112.1| - 0.0033 16.8 0.0 0.0062 15.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|20090037|ref|NP_616112.1| - 0.012 15.6 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding Shikimate_DH PF01488.15 gi|20090037|ref|NP_616112.1| - 0.016 15.2 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|20090037|ref|NP_616112.1| - 0.018 14.0 0.0 0.032 13.2 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Methyltransf_18 PF12847.2 gi|20090037|ref|NP_616112.1| - 0.023 15.2 0.0 0.047 14.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Pyr_redox_2 PF07992.9 gi|20090037|ref|NP_616112.1| - 0.027 14.3 0.0 0.075 12.9 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|20090037|ref|NP_616112.1| - 0.038 14.2 0.0 0.098 12.9 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|20090037|ref|NP_616112.1| - 0.047 12.7 0.0 0.11 11.5 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain ADH_zinc_N PF00107.21 gi|20090037|ref|NP_616112.1| - 0.07 12.6 0.0 0.75 9.3 0.0 2.4 2 0 0 2 2 2 0 Zinc-binding dehydrogenase CPSase_L_chain PF00289.17 gi|20090037|ref|NP_616112.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_2 PF03446.10 gi|20090037|ref|NP_616112.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.8 gi|20090037|ref|NP_616112.1| - 0.13 11.4 0.0 0.29 10.3 0.0 1.6 1 0 0 1 1 1 0 NmrA-like family STT3 PF02516.9 gi|20090038|ref|NP_616113.1| - 9.8e-32 110.5 27.1 2.2e-31 109.3 18.8 1.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|20090038|ref|NP_616113.1| - 2.4e-07 30.7 2.6 2.4e-07 30.7 1.8 4.6 5 1 1 6 6 6 1 Dolichyl-phosphate-mannose-protein mannosyltransferase UPF0233 PF06781.7 gi|20090038|ref|NP_616113.1| - 0.041 13.5 3.8 9.3 5.9 0.0 3.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) Epimerase PF01370.16 gi|20090039|ref|NP_616114.1| - 3.2e-67 226.4 0.0 3.8e-67 226.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|20090039|ref|NP_616114.1| - 2e-08 33.4 0.0 3.4e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase_Csub PF13950.1 gi|20090039|ref|NP_616114.1| - 0.00095 19.0 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit adh_short PF00106.20 gi|20090039|ref|NP_616114.1| - 0.0021 17.9 0.0 0.003 17.4 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|20090039|ref|NP_616114.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family NAD_binding_4 PF07993.7 gi|20090039|ref|NP_616114.1| - 0.16 10.8 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein Epimerase PF01370.16 gi|20090040|ref|NP_616115.1| - 1.8e-65 220.7 0.0 2.1e-65 220.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|20090040|ref|NP_616115.1| - 1.6e-13 50.1 0.0 2.2e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|20090040|ref|NP_616115.1| - 4.2e-06 25.6 0.0 5.5e-06 25.2 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|20090040|ref|NP_616115.1| - 7.4e-05 21.7 0.0 0.00011 21.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|20090040|ref|NP_616115.1| - 0.00021 21.2 0.0 0.00031 20.7 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Glycos_transf_1 PF00534.15 gi|20090041|ref|NP_616116.1| - 3.6e-30 104.6 0.1 8.9e-30 103.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20090041|ref|NP_616116.1| - 1.7e-14 54.1 0.0 4.3e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20090041|ref|NP_616116.1| - 1.2e-05 25.4 0.1 4.1e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_3 PF13528.1 gi|20090041|ref|NP_616116.1| - 0.00059 19.1 0.0 0.00095 18.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glyco_transf_4 PF13439.1 gi|20090041|ref|NP_616116.1| - 0.026 14.2 2.2 0.13 11.9 1.5 2.0 1 1 0 1 1 1 0 Glycosyltransferase Family 4 ABC2_membrane PF01061.19 gi|20090042|ref|NP_616117.1| - 1.6e-29 102.6 34.3 1.6e-29 102.6 23.7 1.9 2 0 0 2 2 2 1 ABC-2 type transporter DUF350 PF03994.9 gi|20090042|ref|NP_616117.1| - 0.89 9.3 0.0 0.89 9.3 0.0 3.6 3 0 0 3 3 3 0 Domain of Unknown Function (DUF350) Wzt_C PF14524.1 gi|20090043|ref|NP_616118.1| - 1.8e-31 108.7 0.1 3.8e-31 107.6 0.0 1.6 2 0 0 2 2 1 1 Wzt C-terminal domain ABC_tran PF00005.22 gi|20090043|ref|NP_616118.1| - 3e-22 79.4 0.2 1.1e-21 77.5 0.1 2.0 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090043|ref|NP_616118.1| - 1.4e-10 41.6 6.5 2.1e-08 34.4 1.9 3.1 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20090043|ref|NP_616118.1| - 9.3e-06 25.0 0.1 3.8e-05 23.1 0.1 1.9 1 1 1 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|20090043|ref|NP_616118.1| - 1.5e-05 24.2 3.5 0.037 13.0 0.1 2.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|20090043|ref|NP_616118.1| - 0.00015 21.2 1.1 0.28 10.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain MobB PF03205.9 gi|20090043|ref|NP_616118.1| - 0.0022 17.7 1.0 0.019 14.6 0.1 2.4 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|20090043|ref|NP_616118.1| - 0.0049 17.6 0.1 0.011 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|20090043|ref|NP_616118.1| - 0.0061 16.7 0.1 0.03 14.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|20090043|ref|NP_616118.1| - 0.0074 15.5 0.4 0.11 11.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20090043|ref|NP_616118.1| - 0.012 15.7 0.1 0.03 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20090043|ref|NP_616118.1| - 0.013 15.8 0.3 0.052 13.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|20090043|ref|NP_616118.1| - 0.038 13.8 0.2 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|20090043|ref|NP_616118.1| - 0.056 13.1 0.2 0.15 11.7 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|20090043|ref|NP_616118.1| - 0.07 12.8 0.2 12 5.5 0.1 2.4 2 0 0 2 2 2 0 NTPase ArgK PF03308.11 gi|20090043|ref|NP_616118.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 ArgK protein Mg_chelatase PF01078.16 gi|20090043|ref|NP_616118.1| - 0.14 11.3 0.1 0.45 9.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|20090043|ref|NP_616118.1| - 0.2 11.2 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|20090043|ref|NP_616118.1| - 0.28 11.4 8.3 0.053 13.8 3.0 2.2 2 1 0 2 2 1 0 AAA domain MetW PF07021.7 gi|20090044|ref|NP_616119.1| - 1.1e-13 50.9 0.2 2.3e-13 49.9 0.1 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.1 gi|20090044|ref|NP_616119.1| - 2.5e-13 50.0 0.0 4.3e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090044|ref|NP_616119.1| - 9e-08 32.5 0.0 1.7e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090044|ref|NP_616119.1| - 3.9e-06 26.5 0.5 8.2e-06 25.4 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Apolipoprotein PF01442.13 gi|20090044|ref|NP_616119.1| - 1.3e-05 24.7 0.1 2.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Methyltransf_18 PF12847.2 gi|20090044|ref|NP_616119.1| - 0.00018 22.0 0.1 0.00057 20.4 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090044|ref|NP_616119.1| - 0.00023 21.4 0.0 0.00049 20.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090044|ref|NP_616119.1| - 0.00097 19.5 0.1 0.0028 18.0 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Ehrlichia_rpt PF09528.5 gi|20090044|ref|NP_616119.1| - 0.0032 15.6 0.2 0.0048 15.1 0.1 1.2 1 0 0 1 1 1 1 Ehrlichia tandem repeat (Ehrlichia_rpt) Methyltransf_26 PF13659.1 gi|20090044|ref|NP_616119.1| - 0.0036 17.3 0.0 0.0064 16.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Sds3 PF08598.6 gi|20090044|ref|NP_616119.1| - 0.0054 16.2 0.2 0.0093 15.5 0.1 1.4 1 0 0 1 1 1 1 Sds3-like Baculo_PEP_C PF04513.7 gi|20090044|ref|NP_616119.1| - 0.0096 15.7 1.4 0.0096 15.7 1.0 1.8 2 0 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus OmpH PF03938.9 gi|20090044|ref|NP_616119.1| - 0.022 14.7 2.1 0.034 14.0 1.4 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF883 PF05957.8 gi|20090044|ref|NP_616119.1| - 0.034 14.5 0.2 0.077 13.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Mitofilin PF09731.4 gi|20090044|ref|NP_616119.1| - 0.071 11.7 2.4 0.11 11.1 1.7 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Phe_tRNA-synt_N PF02912.13 gi|20090044|ref|NP_616119.1| - 0.1 12.3 0.8 0.3 10.8 0.4 1.9 1 1 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain Prominin PF05478.6 gi|20090044|ref|NP_616119.1| - 0.13 9.7 0.6 0.2 9.1 0.4 1.2 1 0 0 1 1 1 0 Prominin Tup_N PF08581.5 gi|20090044|ref|NP_616119.1| - 0.16 12.1 5.1 0.47 10.6 3.6 1.8 1 0 0 1 1 1 0 Tup N-terminal Meckelin PF09773.4 gi|20090044|ref|NP_616119.1| - 0.16 9.6 0.8 0.21 9.3 0.2 1.3 2 0 0 2 2 2 0 Meckelin (Transmembrane protein 67) WXG100 PF06013.7 gi|20090044|ref|NP_616119.1| - 0.24 11.4 1.5 3.5 7.6 0.1 2.9 3 0 0 3 3 3 0 Proteins of 100 residues with WXG BicD PF09730.4 gi|20090044|ref|NP_616119.1| - 1 7.6 10.2 0.016 13.6 2.2 1.4 2 0 0 2 2 2 0 Microtubule-associated protein Bicaudal-D GrpE PF01025.14 gi|20090044|ref|NP_616119.1| - 2.1 7.8 7.7 0.24 10.9 2.2 1.7 2 0 0 2 2 2 0 GrpE HSCB_C PF07743.8 gi|20090044|ref|NP_616119.1| - 2.5 8.6 12.2 2.3 8.7 0.7 2.8 2 1 1 3 3 2 0 HSCB C-terminal oligomerisation domain DUF1664 PF07889.7 gi|20090044|ref|NP_616119.1| - 2.7 7.8 7.6 0.6 9.9 2.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) PLC-beta_C PF08703.5 gi|20090044|ref|NP_616119.1| - 4.6 6.9 10.8 0.036 13.7 1.7 1.7 2 0 0 2 2 1 0 PLC-beta C terminal Glycos_transf_1 PF00534.15 gi|20090045|ref|NP_616120.1| - 6.8e-36 123.2 0.9 2.8e-26 91.9 0.0 2.9 3 0 0 3 3 3 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20090045|ref|NP_616120.1| - 3.2e-33 114.7 0.0 3.2e-16 59.7 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20090045|ref|NP_616120.1| - 7.2e-18 64.6 0.0 2.5e-08 34.0 0.0 2.8 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20090045|ref|NP_616120.1| - 1.9e-05 24.4 0.5 8.2e-05 22.3 0.0 2.4 4 0 0 4 4 4 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|20090046|ref|NP_616121.1| - 3.1e-15 56.0 0.0 7.4e-15 54.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20090046|ref|NP_616121.1| - 1.1e-11 44.7 0.0 4.8e-11 42.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20090046|ref|NP_616121.1| - 1.3e-09 38.3 0.0 2.4e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3367 PF11847.3 gi|20090047|ref|NP_616122.1| - 0.077 10.9 0.5 0.11 10.4 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3367) UPF0104 PF03706.8 gi|20090048|ref|NP_616123.1| - 3.1e-37 128.4 23.2 3.8e-37 128.1 16.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF3447 PF11929.3 gi|20090048|ref|NP_616123.1| - 0.024 14.4 0.9 0.024 14.4 0.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3447) DUF3624 PF12292.3 gi|20090048|ref|NP_616123.1| - 1.5 9.3 10.8 1.6 9.1 0.8 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) Glycos_transf_1 PF00534.15 gi|20090049|ref|NP_616124.1| - 1.2e-44 151.7 0.5 1.9e-44 151.0 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20090049|ref|NP_616124.1| - 6.3e-18 65.2 0.0 9.3e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20090049|ref|NP_616124.1| - 3e-10 40.0 0.5 8.5e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|20090049|ref|NP_616124.1| - 7.1e-09 35.9 0.0 1e-08 35.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|20090049|ref|NP_616124.1| - 0.00026 21.1 0.0 0.00052 20.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20090049|ref|NP_616124.1| - 0.00067 19.4 0.0 0.17 11.6 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|20090050|ref|NP_616125.1| - 7.5e-37 126.6 0.1 1.1e-36 126.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20090050|ref|NP_616125.1| - 1.4e-12 47.9 0.0 1.9e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|20090050|ref|NP_616125.1| - 1.9e-10 40.3 0.1 1e-09 37.8 0.0 1.9 1 1 1 2 2 2 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|20090050|ref|NP_616125.1| - 0.0018 18.3 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.1 gi|20090050|ref|NP_616125.1| - 0.0066 15.7 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|20090050|ref|NP_616125.1| - 0.021 15.1 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Alpha-amylase PF00128.19 gi|20090050|ref|NP_616125.1| - 0.044 13.1 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Alpha amylase, catalytic domain Epimerase PF01370.16 gi|20090051|ref|NP_616126.1| - 3.9e-62 209.7 0.0 4.8e-62 209.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|20090051|ref|NP_616126.1| - 1.4e-27 96.1 0.0 1.9e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|20090051|ref|NP_616126.1| - 1.9e-21 76.2 0.0 1.1e-20 73.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|20090051|ref|NP_616126.1| - 1.4e-16 60.2 0.0 1.7e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|20090051|ref|NP_616126.1| - 2e-13 49.8 0.0 3.5e-13 49.0 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|20090051|ref|NP_616126.1| - 1.8e-09 37.8 0.0 3.4e-09 36.9 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|20090051|ref|NP_616126.1| - 1.9e-07 31.1 0.0 3.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|20090051|ref|NP_616126.1| - 7.3e-07 28.6 0.0 2.1e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 NmrA-like family Epimerase_Csub PF13950.1 gi|20090051|ref|NP_616126.1| - 0.00065 19.5 0.1 0.0013 18.6 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|20090051|ref|NP_616126.1| - 0.00095 18.8 0.0 0.0055 16.3 0.0 1.9 1 1 0 1 1 1 1 KR domain Glycos_transf_1 PF00534.15 gi|20090052|ref|NP_616127.1| - 9.3e-36 122.8 0.7 1.4e-35 122.2 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20090052|ref|NP_616127.1| - 3.8e-20 72.4 0.0 8.1e-20 71.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20090052|ref|NP_616127.1| - 6.1e-17 61.9 0.0 1.2e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|20090052|ref|NP_616127.1| - 3.5e-14 53.2 0.0 6.8e-14 52.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|20090052|ref|NP_616127.1| - 4.5e-09 36.4 0.0 8.2e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|20090052|ref|NP_616127.1| - 0.0015 17.3 0.0 0.002 16.9 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.1 gi|20090052|ref|NP_616127.1| - 0.013 15.2 0.5 0.15 11.8 0.0 2.7 3 0 0 3 3 3 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|20090053|ref|NP_616128.1| - 3.7e-21 75.5 0.0 5.8e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20090053|ref|NP_616128.1| - 4.3e-06 26.6 0.0 6.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|20090053|ref|NP_616128.1| - 0.0036 16.4 0.0 0.0054 15.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|20090053|ref|NP_616128.1| - 0.005 16.1 0.0 0.011 15.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 SUV3_C PF12513.3 gi|20090054|ref|NP_616129.1| - 0.11 12.0 0.1 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial degradasome RNA helicase subunit C terminal FMN_red PF03358.10 gi|20090055|ref|NP_616130.1| - 3.5e-14 52.5 0.0 5.9e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|20090055|ref|NP_616130.1| - 2.3e-05 24.3 0.3 0.00012 22.0 0.2 2.1 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|20090055|ref|NP_616130.1| - 0.0031 17.0 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|20090055|ref|NP_616130.1| - 0.054 13.5 0.0 0.73 9.8 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain Glyco_hydro_15 PF00723.16 gi|20090056|ref|NP_616131.1| - 1.3e-16 60.1 0.1 1.8e-09 36.6 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|20090056|ref|NP_616131.1| - 0.0011 17.8 0.0 0.0017 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_transf_36 PF06165.6 gi|20090056|ref|NP_616131.1| - 0.0053 16.5 0.2 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 36 Acetyltransf_1 PF00583.19 gi|20090057|ref|NP_616132.1| - 2.6e-13 49.7 0.1 4e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20090057|ref|NP_616132.1| - 8.8e-11 41.8 0.2 1.3e-10 41.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20090057|ref|NP_616132.1| - 1.4e-06 28.3 0.0 1.8e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20090057|ref|NP_616132.1| - 5.1e-06 26.5 0.1 5.6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20090057|ref|NP_616132.1| - 9.8e-06 25.6 0.0 1.1e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20090057|ref|NP_616132.1| - 2.9e-05 24.2 0.0 3.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20090057|ref|NP_616132.1| - 9.6e-05 22.1 0.2 0.00018 21.2 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|20090057|ref|NP_616132.1| - 0.083 12.4 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20090057|ref|NP_616132.1| - 0.084 12.6 0.1 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Peptidase_M20 PF01546.23 gi|20090058|ref|NP_616133.1| - 3.1e-22 79.0 0.0 3.9e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|20090058|ref|NP_616133.1| - 4.7e-08 32.7 0.0 1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain NTP_transf_2 PF01909.18 gi|20090059|ref|NP_616134.1| - 0.00018 21.7 0.0 0.00049 20.3 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|20090059|ref|NP_616134.1| - 0.047 13.2 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Condensation PF00668.15 gi|20090060|ref|NP_616135.1| - 1.6e-11 43.6 0.0 1.7e-10 40.2 0.0 2.0 1 1 0 1 1 1 1 Condensation domain AATase PF07247.7 gi|20090060|ref|NP_616135.1| - 0.00021 19.9 0.0 0.063 11.8 0.0 3.0 2 1 0 2 2 2 1 Alcohol acetyltransferase PKD PF00801.15 gi|20090061|ref|NP_616136.1| - 1.3e-11 44.0 5.4 1.3e-11 44.0 3.8 2.5 3 0 0 3 3 3 1 PKD domain NPCBM_assoc PF10633.4 gi|20090061|ref|NP_616136.1| - 5e-06 26.4 4.3 0.014 15.4 0.0 4.2 3 1 1 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2531 PF10748.4 gi|20090061|ref|NP_616136.1| - 0.049 12.8 0.4 0.3 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2531) Dockerin_1 PF00404.13 gi|20090061|ref|NP_616136.1| - 0.38 10.5 2.1 0.9 9.3 1.5 1.7 1 0 0 1 1 1 0 Dockerin type I repeat DUF4139 PF13598.1 gi|20090062|ref|NP_616137.1| - 1.6e-09 37.5 8.2 4.1e-07 29.6 2.6 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4139) DUF4140 PF13600.1 gi|20090062|ref|NP_616137.1| - 6.8e-05 23.2 0.5 0.00057 20.2 0.0 2.5 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) LSM PF01423.17 gi|20090062|ref|NP_616137.1| - 0.0006 19.3 0.1 0.0015 18.0 0.0 1.7 1 0 0 1 1 1 1 LSM domain Peripla_BP_2 PF01497.13 gi|20090063|ref|NP_616138.1| - 4.6e-27 94.6 0.7 9.4e-27 93.6 0.5 1.5 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.22 gi|20090064|ref|NP_616139.1| - 1e-32 113.3 0.0 1.4e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090064|ref|NP_616139.1| - 7.9e-15 55.5 0.1 1.7e-07 31.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20090064|ref|NP_616139.1| - 7.3e-07 28.5 0.0 0.0014 17.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|20090064|ref|NP_616139.1| - 9.6e-07 28.2 0.0 0.00011 21.4 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|20090064|ref|NP_616139.1| - 3e-05 23.6 0.1 0.13 11.6 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.24 gi|20090064|ref|NP_616139.1| - 0.00011 22.3 0.1 0.0097 16.1 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|20090064|ref|NP_616139.1| - 0.00026 20.2 0.3 0.00039 19.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|20090064|ref|NP_616139.1| - 0.00088 19.4 0.1 0.0081 16.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20090064|ref|NP_616139.1| - 0.0013 18.2 0.3 0.003 17.0 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|20090064|ref|NP_616139.1| - 0.0024 17.4 0.1 0.015 14.9 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20090064|ref|NP_616139.1| - 0.0025 17.8 0.0 0.0056 16.6 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|20090064|ref|NP_616139.1| - 0.0031 17.8 0.6 0.0049 17.2 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|20090064|ref|NP_616139.1| - 0.005 16.5 0.2 0.048 13.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|20090064|ref|NP_616139.1| - 0.0059 16.2 0.3 0.0099 15.5 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|20090064|ref|NP_616139.1| - 0.0099 15.6 2.2 0.29 10.8 0.1 3.0 2 2 1 3 3 3 1 NTPase AAA_25 PF13481.1 gi|20090064|ref|NP_616139.1| - 0.01 15.2 0.0 0.051 12.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|20090064|ref|NP_616139.1| - 0.011 15.6 0.0 0.059 13.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|20090064|ref|NP_616139.1| - 0.011 15.3 0.8 0.031 13.9 0.1 1.9 1 1 1 2 2 2 0 NACHT domain Arch_ATPase PF01637.13 gi|20090064|ref|NP_616139.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|20090064|ref|NP_616139.1| - 0.033 13.0 0.3 0.057 12.2 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|20090064|ref|NP_616139.1| - 0.035 14.0 0.0 0.25 11.2 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|20090064|ref|NP_616139.1| - 0.038 13.1 0.0 0.064 12.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|20090064|ref|NP_616139.1| - 0.061 11.9 0.2 7.7 4.9 0.3 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|20090064|ref|NP_616139.1| - 0.14 11.9 0.2 0.67 9.7 0.1 2.2 2 1 0 2 2 2 0 Part of AAA domain FecCD PF01032.13 gi|20090065|ref|NP_616140.1| - 3e-88 295.6 28.4 3.8e-88 295.3 19.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20090065|ref|NP_616140.1| - 1.1e-06 28.1 17.8 1.1e-06 28.1 12.3 1.7 2 0 0 2 2 2 1 ABC 3 transport family HAMP PF00672.20 gi|20090065|ref|NP_616140.1| - 0.027 14.6 0.4 0.027 14.6 0.3 3.0 2 1 1 3 3 3 0 HAMP domain Peripla_BP_2 PF01497.13 gi|20090066|ref|NP_616141.1| - 6.9e-26 90.8 0.0 1.6e-25 89.6 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein Radical_SAM PF04055.16 gi|20090068|ref|NP_616143.1| - 1.7e-11 44.5 0.0 5.8e-11 42.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Peripla_BP_2 PF01497.13 gi|20090068|ref|NP_616143.1| - 1.2e-05 24.6 0.0 1.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.1 gi|20090068|ref|NP_616143.1| - 2.7e-05 24.3 0.2 5.8e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Auto_anti-p27 PF06677.7 gi|20090068|ref|NP_616143.1| - 0.0046 16.6 0.2 0.017 14.8 0.0 2.1 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Fer4_14 PF13394.1 gi|20090068|ref|NP_616143.1| - 0.019 14.9 0.2 0.069 13.1 0.1 2.0 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_NifH PF00142.13 gi|20090069|ref|NP_616144.1| - 1.3e-134 447.6 2.9 1.5e-134 447.4 2.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|20090069|ref|NP_616144.1| - 0.00033 20.1 0.0 0.00066 19.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20090069|ref|NP_616144.1| - 0.0029 16.7 0.0 0.0061 15.6 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|20090069|ref|NP_616144.1| - 0.009 15.4 0.0 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|20090069|ref|NP_616144.1| - 0.0093 15.9 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta2 PF13177.1 gi|20090069|ref|NP_616144.1| - 0.15 11.7 0.0 4.8 6.8 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III, delta subunit Pyridox_ox_2 PF12900.2 gi|20090070|ref|NP_616145.1| - 1.2e-28 99.6 0.0 1.5e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|20090070|ref|NP_616145.1| - 1.5e-09 37.7 0.0 2.1e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AnfO_nitrog PF09582.5 gi|20090071|ref|NP_616146.1| - 3.3e-68 228.8 0.0 4e-68 228.5 0.0 1.1 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) DUF2482 PF10655.4 gi|20090071|ref|NP_616146.1| - 0.078 13.0 0.1 0.29 11.1 0.0 1.9 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) Nitro_FeMo-Co PF02579.12 gi|20090071|ref|NP_616146.1| - 0.13 12.3 0.1 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Oxidored_nitro PF00148.14 gi|20090072|ref|NP_616147.1| - 1.1e-112 376.5 0.0 1.3e-112 376.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase AnfG_VnfG PF03139.10 gi|20090073|ref|NP_616148.1| - 2.1e-53 178.8 0.3 2.4e-53 178.7 0.2 1.0 1 0 0 1 1 1 1 Vanadium/alternative nitrogenase delta subunit Oxidored_nitro PF00148.14 gi|20090074|ref|NP_616149.1| - 4.1e-102 341.8 0.0 4.7e-102 341.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase P-II PF00543.17 gi|20090075|ref|NP_616150.1| - 3.2e-35 120.6 0.2 3.7e-35 120.4 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.17 gi|20090076|ref|NP_616151.1| - 2.3e-31 108.3 0.4 2.5e-31 108.1 0.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|20090076|ref|NP_616151.1| - 0.00057 19.8 0.3 0.011 15.6 0.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF970) Fer4_NifH PF00142.13 gi|20090077|ref|NP_616152.1| - 1.3e-134 447.6 2.9 1.5e-134 447.4 2.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|20090077|ref|NP_616152.1| - 0.00033 20.1 0.0 0.00066 19.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20090077|ref|NP_616152.1| - 0.0029 16.7 0.0 0.0061 15.6 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|20090077|ref|NP_616152.1| - 0.009 15.4 0.0 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|20090077|ref|NP_616152.1| - 0.0093 15.9 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta2 PF13177.1 gi|20090077|ref|NP_616152.1| - 0.15 11.7 0.0 4.8 6.8 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III, delta subunit P-II PF00543.17 gi|20090078|ref|NP_616153.1| - 8.9e-32 109.6 0.1 9.9e-32 109.4 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|20090078|ref|NP_616153.1| - 0.00015 21.6 0.1 0.003 17.5 0.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF970) P-II PF00543.17 gi|20090079|ref|NP_616154.1| - 9.6e-35 119.1 0.3 1.2e-34 118.8 0.2 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.14 gi|20090080|ref|NP_616155.1| - 2.9e-108 362.0 0.1 3.4e-108 361.8 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peripla_BP_2 PF01497.13 gi|20090080|ref|NP_616155.1| - 0.0021 17.2 0.0 0.0042 16.2 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein AnfG_VnfG PF03139.10 gi|20090081|ref|NP_616156.1| - 7.2e-45 151.3 0.2 7.9e-45 151.2 0.1 1.0 1 0 0 1 1 1 1 Vanadium/alternative nitrogenase delta subunit Oxidored_nitro PF00148.14 gi|20090082|ref|NP_616157.1| - 2.6e-118 395.1 0.0 2.9e-118 394.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|20090083|ref|NP_616158.1| - 4.7e-75 252.6 0.2 7.9e-75 251.9 0.2 1.4 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|20090084|ref|NP_616159.1| - 2.1e-91 306.5 0.0 2.4e-91 306.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NMT1 PF09084.6 gi|20090084|ref|NP_616159.1| - 0.046 13.3 0.0 0.081 12.5 0.0 1.3 1 0 0 1 1 1 0 NMT1/THI5 like Nitro_FeMo-Co PF02579.12 gi|20090085|ref|NP_616160.1| - 1.8e-19 69.6 0.0 2.8e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Peripla_BP_2 PF01497.13 gi|20090086|ref|NP_616161.1| - 9.7e-34 116.5 0.1 1.3e-33 116.0 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Aconitase_C PF00694.14 gi|20090087|ref|NP_616162.1| - 3.4e-21 75.7 0.0 4.9e-21 75.2 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|20090087|ref|NP_616162.1| - 2e-05 24.0 0.0 0.0023 17.3 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus MORN_2 PF07661.8 gi|20090088|ref|NP_616163.1| - 0.00046 19.8 0.0 20 5.6 0.0 5.2 5 0 0 5 5 5 2 MORN repeat variant HMGL-like PF00682.14 gi|20090089|ref|NP_616164.1| - 7.4e-69 232.0 0.0 9.5e-69 231.6 0.0 1.0 1 0 0 1 1 1 1 HMGL-like DUF682 PF05081.7 gi|20090089|ref|NP_616164.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF682) HMGL-like PF00682.14 gi|20090090|ref|NP_616165.1| - 1.5e-16 60.7 0.0 2.6e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 HMGL-like CsrA PF02599.11 gi|20090090|ref|NP_616165.1| - 0.1 12.3 0.3 0.28 10.9 0.1 1.8 2 0 0 2 2 2 0 Global regulator protein family ABC_tran PF00005.22 gi|20090091|ref|NP_616166.1| - 4.9e-17 62.5 0.0 7.7e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090091|ref|NP_616166.1| - 1.3e-07 31.8 0.2 0.00059 19.8 0.1 2.6 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|20090091|ref|NP_616166.1| - 1.8e-06 27.3 0.2 3e-06 26.6 0.1 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20090091|ref|NP_616166.1| - 0.00012 22.1 0.1 0.00083 19.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|20090091|ref|NP_616166.1| - 0.00047 19.6 0.0 0.001 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|20090091|ref|NP_616166.1| - 0.00059 19.5 0.0 0.0016 18.1 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain AAA_16 PF13191.1 gi|20090091|ref|NP_616166.1| - 0.00079 19.4 0.0 0.0017 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|20090091|ref|NP_616166.1| - 0.0019 17.7 0.1 0.0042 16.6 0.0 1.6 2 0 0 2 2 1 1 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|20090091|ref|NP_616166.1| - 0.0049 17.2 0.1 0.011 16.0 0.0 1.8 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|20090091|ref|NP_616166.1| - 0.007 16.0 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|20090091|ref|NP_616166.1| - 0.0089 15.9 0.1 2 8.2 0.0 2.5 1 1 0 2 2 2 1 AAA domain DUF1858 PF08984.6 gi|20090091|ref|NP_616166.1| - 0.013 15.1 0.0 0.044 13.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1858) AAA_29 PF13555.1 gi|20090091|ref|NP_616166.1| - 0.014 14.9 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|20090091|ref|NP_616166.1| - 0.019 14.6 0.1 0.66 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ResIII PF04851.10 gi|20090091|ref|NP_616166.1| - 0.032 14.0 0.1 0.071 12.9 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|20090091|ref|NP_616166.1| - 0.037 14.8 0.9 0.14 13.0 0.3 2.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|20090091|ref|NP_616166.1| - 0.038 13.7 2.2 0.1 12.2 0.2 2.4 2 1 0 2 2 2 0 Archaeal ATPase PhoH PF02562.11 gi|20090091|ref|NP_616166.1| - 0.054 12.7 0.0 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_30 PF13604.1 gi|20090091|ref|NP_616166.1| - 0.08 12.5 0.0 0.16 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|20090091|ref|NP_616166.1| - 0.088 11.7 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DUF258 PF03193.11 gi|20090091|ref|NP_616166.1| - 0.12 11.5 0.0 0.57 9.3 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|20090091|ref|NP_616166.1| - 0.12 11.4 0.2 0.57 9.2 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.14 gi|20090092|ref|NP_616167.1| - 5.3e-13 48.7 0.1 7e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|20090092|ref|NP_616167.1| - 4.4e-06 25.6 0.3 0.0016 17.3 0.0 2.1 2 0 0 2 2 2 2 ArgK protein KTI12 PF08433.5 gi|20090092|ref|NP_616167.1| - 5.9e-05 22.3 0.1 8.4e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MobB PF03205.9 gi|20090092|ref|NP_616167.1| - 0.0007 19.3 0.2 0.0017 18.0 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|20090092|ref|NP_616167.1| - 0.0036 17.0 0.1 0.007 16.0 0.1 1.5 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.12 gi|20090092|ref|NP_616167.1| - 0.008 15.7 0.0 0.04 13.4 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_35 PF14516.1 gi|20090092|ref|NP_616167.1| - 0.012 14.2 0.0 0.016 13.8 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|20090092|ref|NP_616167.1| - 0.015 15.0 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|20090092|ref|NP_616167.1| - 0.021 14.2 0.1 0.21 11.0 0.0 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|20090092|ref|NP_616167.1| - 0.035 14.0 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|20090092|ref|NP_616167.1| - 0.037 13.7 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DnaB_C PF03796.10 gi|20090092|ref|NP_616167.1| - 0.066 12.0 0.0 0.094 11.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Redoxin PF08534.5 gi|20090092|ref|NP_616167.1| - 0.077 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Redoxin Zeta_toxin PF06414.7 gi|20090092|ref|NP_616167.1| - 0.087 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.1 gi|20090092|ref|NP_616167.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain SBP_bac_6 PF13343.1 gi|20090093|ref|NP_616168.1| - 3.3e-67 226.3 0.0 3.9e-67 226.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Peripla_BP_2 PF01497.13 gi|20090094|ref|NP_616169.1| - 1.5e-22 79.9 0.1 2.4e-22 79.2 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|20090095|ref|NP_616170.1| - 2.4e-20 72.7 0.4 3.5e-20 72.1 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|20090096|ref|NP_616171.1| - 7.8e-24 84.1 1.0 1.1e-23 83.6 0.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peptidase_S3 PF00944.14 gi|20090096|ref|NP_616171.1| - 0.094 12.1 0.0 0.22 10.9 0.0 1.6 1 0 0 1 1 1 0 Alphavirus core protein ABC_tran PF00005.22 gi|20090097|ref|NP_616172.1| - 3.2e-30 105.1 0.0 4.7e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090097|ref|NP_616172.1| - 1e-14 55.2 2.9 1.3e-12 48.3 2.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20090097|ref|NP_616172.1| - 3.3e-09 36.3 0.2 5.9e-09 35.4 0.2 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20090097|ref|NP_616172.1| - 6.2e-07 29.9 0.3 9.4e-07 29.3 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20090097|ref|NP_616172.1| - 9.8e-07 28.1 5.4 0.0087 15.1 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|20090097|ref|NP_616172.1| - 3.1e-05 23.4 0.0 6.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|20090097|ref|NP_616172.1| - 0.00014 21.0 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|20090097|ref|NP_616172.1| - 0.0003 20.9 0.1 0.0012 19.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20090097|ref|NP_616172.1| - 0.00058 19.8 0.0 0.0011 19.0 0.0 1.4 2 0 0 2 2 1 1 AAA ATPase domain DUF258 PF03193.11 gi|20090097|ref|NP_616172.1| - 0.0017 17.5 0.1 0.0028 16.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|20090097|ref|NP_616172.1| - 0.0022 18.1 0.1 0.0043 17.2 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.1 gi|20090097|ref|NP_616172.1| - 0.004 17.0 0.1 0.061 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|20090097|ref|NP_616172.1| - 0.0046 17.1 0.3 0.025 14.7 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|20090097|ref|NP_616172.1| - 0.0046 16.6 0.1 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_5 PF07728.9 gi|20090097|ref|NP_616172.1| - 0.0065 16.1 0.0 0.027 14.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|20090097|ref|NP_616172.1| - 0.012 15.3 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|20090097|ref|NP_616172.1| - 0.013 14.9 0.0 0.036 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|20090097|ref|NP_616172.1| - 0.013 14.1 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain MobB PF03205.9 gi|20090097|ref|NP_616172.1| - 0.015 15.0 0.2 0.13 12.0 0.1 2.4 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|20090097|ref|NP_616172.1| - 0.02 14.3 0.4 0.069 12.5 0.3 1.8 1 1 1 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|20090097|ref|NP_616172.1| - 0.02 14.2 0.1 0.14 11.5 0.0 2.1 2 0 0 2 2 2 0 MutS domain V Lon_2 PF13337.1 gi|20090097|ref|NP_616172.1| - 0.031 12.6 0.1 0.041 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease PhoH PF02562.11 gi|20090097|ref|NP_616172.1| - 0.048 12.8 0.0 0.079 12.1 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.7 gi|20090097|ref|NP_616172.1| - 0.048 13.3 0.1 0.088 12.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|20090097|ref|NP_616172.1| - 0.078 12.9 0.6 0.13 12.2 0.4 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.4 gi|20090097|ref|NP_616172.1| - 0.084 11.4 0.0 0.92 8.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ArgK PF03308.11 gi|20090097|ref|NP_616172.1| - 0.088 11.5 0.0 0.26 10.0 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|20090097|ref|NP_616172.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain FecCD PF01032.13 gi|20090098|ref|NP_616173.1| - 3e-95 318.6 30.3 3.7e-95 318.3 21.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20090098|ref|NP_616173.1| - 3.5e-05 23.2 19.0 3.5e-05 23.2 13.2 1.9 2 1 0 2 2 2 1 ABC 3 transport family Oxidored_q3 PF00499.15 gi|20090098|ref|NP_616173.1| - 0.0094 15.7 15.6 0.0094 15.7 10.8 2.8 2 1 1 3 3 3 2 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Cortexin PF11057.3 gi|20090098|ref|NP_616173.1| - 8.1 6.1 7.7 12 5.6 0.1 2.8 2 1 1 3 3 3 0 Cortexin of kidney ABC_tran PF00005.22 gi|20090099|ref|NP_616174.1| - 1.6e-32 112.6 0.0 2.7e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090099|ref|NP_616174.1| - 5e-13 49.6 5.0 2.3e-07 31.0 0.1 2.7 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|20090099|ref|NP_616174.1| - 1.4e-07 31.0 0.1 1.1e-06 28.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20090099|ref|NP_616174.1| - 2.3e-06 28.0 3.6 6.4e-06 26.6 2.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20090099|ref|NP_616174.1| - 0.00038 19.9 0.1 0.00086 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|20090099|ref|NP_616174.1| - 0.00066 18.8 9.2 0.031 13.3 0.2 3.0 3 1 0 4 4 3 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|20090099|ref|NP_616174.1| - 0.00075 19.2 0.1 0.0013 18.5 0.1 1.5 1 1 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|20090099|ref|NP_616174.1| - 0.0014 17.8 0.0 0.0027 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|20090099|ref|NP_616174.1| - 0.0039 17.3 0.3 0.043 14.0 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|20090099|ref|NP_616174.1| - 0.0044 17.1 0.4 0.051 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|20090099|ref|NP_616174.1| - 0.0057 16.5 0.1 0.028 14.3 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|20090099|ref|NP_616174.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|20090099|ref|NP_616174.1| - 0.015 13.7 0.0 1.3 7.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20090099|ref|NP_616174.1| - 0.022 14.7 0.1 0.049 13.6 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.4 gi|20090099|ref|NP_616174.1| - 0.039 13.4 0.1 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|20090099|ref|NP_616174.1| - 0.043 14.1 1.3 0.39 11.0 0.2 2.8 2 1 1 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|20090099|ref|NP_616174.1| - 0.046 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain PEPCK_ATP PF01293.15 gi|20090099|ref|NP_616174.1| - 0.047 12.2 0.1 0.069 11.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase UPF0079 PF02367.12 gi|20090099|ref|NP_616174.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|20090099|ref|NP_616174.1| - 0.054 12.9 0.1 0.097 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|20090099|ref|NP_616174.1| - 0.071 13.9 1.1 0.2 12.5 0.8 2.2 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|20090099|ref|NP_616174.1| - 0.079 12.3 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|20090099|ref|NP_616174.1| - 0.08 12.1 0.0 0.26 10.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|20090099|ref|NP_616174.1| - 0.12 11.9 0.1 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|20090099|ref|NP_616174.1| - 0.13 11.1 0.1 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein BPD_transp_1 PF00528.17 gi|20090100|ref|NP_616175.1| - 3.5e-21 75.5 15.2 3.5e-21 75.5 10.5 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|20090101|ref|NP_616176.1| - 9.5e-60 202.0 0.1 1.1e-59 201.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|20090101|ref|NP_616176.1| - 1.1e-22 81.1 0.2 9.4e-11 41.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|20090101|ref|NP_616176.1| - 1e-06 28.2 0.0 2.4e-06 27.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|20090101|ref|NP_616176.1| - 1.2e-06 28.5 0.0 0.0021 17.8 0.0 2.2 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|20090101|ref|NP_616176.1| - 1.5e-06 27.3 0.1 7.1e-06 25.1 0.1 1.9 1 1 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.2 gi|20090101|ref|NP_616176.1| - 6.7e-06 25.6 0.0 9.5e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like_2 PF12849.2 gi|20090101|ref|NP_616176.1| - 0.00026 20.5 3.5 0.003 17.0 0.4 2.1 1 1 1 2 2 2 2 PBP superfamily domain TOBE PF03459.12 gi|20090102|ref|NP_616177.1| - 4.2e-17 61.9 0.0 4.6e-17 61.8 0.0 1.0 1 0 0 1 1 1 1 TOBE domain YcgR_2 PF12945.2 gi|20090102|ref|NP_616177.1| - 0.0074 16.1 0.0 0.0084 15.9 0.0 1.2 1 0 0 1 1 1 1 Flagellar protein YcgR TOBE_2 PF08402.5 gi|20090102|ref|NP_616177.1| - 0.0098 15.8 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|20090103|ref|NP_616178.1| - 1e-15 57.5 0.1 1.1e-15 57.4 0.1 1.1 1 0 0 1 1 1 1 TOBE domain DUF4097 PF13349.1 gi|20090103|ref|NP_616178.1| - 0.0034 16.9 0.1 0.0037 16.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) YcgR_2 PF12945.2 gi|20090103|ref|NP_616178.1| - 0.042 13.7 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 Flagellar protein YcgR TOBE_2 PF08402.5 gi|20090103|ref|NP_616178.1| - 0.055 13.4 0.0 0.072 13.0 0.0 1.1 1 0 0 1 1 1 0 TOBE domain TIP49 PF06068.8 gi|20090103|ref|NP_616178.1| - 0.056 12.1 0.4 0.068 11.8 0.3 1.0 1 0 0 1 1 1 0 TIP49 C-terminus Gemin7 PF11095.3 gi|20090103|ref|NP_616178.1| - 0.093 12.4 0.0 0.12 12.0 0.0 1.3 1 1 0 1 1 1 0 Gem-associated protein 7 (Gemin7) Molybdopterin PF00384.17 gi|20090105|ref|NP_616180.1| - 2.3e-14 53.0 0.0 7.3e-11 41.4 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase CO_dh PF02552.11 gi|20090105|ref|NP_616180.1| - 0.039 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DDE_Tnp_1 PF01609.16 gi|20090106|ref|NP_616181.1| - 9.3e-06 25.3 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain SIR2_2 PF13289.1 gi|20090107|ref|NP_616182.1| - 1.3e-12 47.7 1.2 3.2e-12 46.5 0.2 2.3 2 0 0 2 2 2 1 SIR2-like domain NACHT PF05729.7 gi|20090107|ref|NP_616182.1| - 0.0002 21.0 0.1 0.0039 16.8 0.0 2.5 1 1 0 1 1 1 1 NACHT domain HEAT_2 PF13646.1 gi|20090107|ref|NP_616182.1| - 0.0042 17.3 0.0 0.019 15.2 0.0 2.2 1 0 0 1 1 1 1 HEAT repeats ABC_tran PF00005.22 gi|20090108|ref|NP_616183.1| - 8.4e-31 107.0 0.0 1.3e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20090108|ref|NP_616183.1| - 6.8e-10 39.1 0.1 2.7e-09 37.2 0.1 2.0 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_10 PF12846.2 gi|20090108|ref|NP_616183.1| - 1.5e-07 31.1 0.1 0.0022 17.4 0.0 2.8 2 1 1 3 3 3 2 AAA-like domain AAA_16 PF13191.1 gi|20090108|ref|NP_616183.1| - 2.3e-07 31.0 0.1 4.5e-07 30.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|20090108|ref|NP_616183.1| - 2.5e-07 30.9 0.1 4.9e-06 26.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|20090108|ref|NP_616183.1| - 8.8e-05 23.3 0.0 0.0007 20.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20090108|ref|NP_616183.1| - 0.00013 21.1 0.1 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20090108|ref|NP_616183.1| - 0.00015 22.0 0.0 0.0004 20.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|20090108|ref|NP_616183.1| - 0.00026 20.3 0.0 0.0016 17.6 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.12 gi|20090108|ref|NP_616183.1| - 0.00047 20.0 0.0 0.00091 19.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|20090108|ref|NP_616183.1| - 0.00059 19.3 0.2 0.0017 17.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|20090108|ref|NP_616183.1| - 0.0016 18.1 0.0 0.0042 16.7 0.0 1.7 2 0 0 2 2 1 1 NACHT domain AAA PF00004.24 gi|20090108|ref|NP_616183.1| - 0.0025 18.0 0.1 0.015 15.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|20090108|ref|NP_616183.1| - 0.003 17.7 0.0 0.0052 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_21 PF13304.1 gi|20090108|ref|NP_616183.1| - 0.0056 16.6 0.0 1.5 8.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20090108|ref|NP_616183.1| - 0.0057 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|20090108|ref|NP_616183.1| - 0.0064 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activ_2 PF14532.1 gi|20090108|ref|NP_616183.1| - 0.015 15.3 0.0 0.042 13.9 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|20090108|ref|NP_616183.1| - 0.018 14.5 0.1 0.041 13.3 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|20090108|ref|NP_616183.1| - 0.019 14.8 0.1 0.037 13.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|20090108|ref|NP_616183.1| - 0.022 13.8 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Hpr_kinase_C PF07475.7 gi|20090108|ref|NP_616183.1| - 0.026 13.8 0.0 0.058 12.6 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain PRK PF00485.13 gi|20090108|ref|NP_616183.1| - 0.032 13.7 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.1 gi|20090108|ref|NP_616183.1| - 0.033 14.0 0.0 0.082 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|20090108|ref|NP_616183.1| - 0.036 13.4 0.1 0.1 12.0 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|20090108|ref|NP_616183.1| - 0.042 13.5 0.2 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.17 gi|20090108|ref|NP_616183.1| - 0.047 12.5 0.0 0.084 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|20090108|ref|NP_616183.1| - 0.049 13.3 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) ATP_bind_4 PF01902.12 gi|20090108|ref|NP_616183.1| - 0.054 12.8 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region MMR_HSR1 PF01926.18 gi|20090108|ref|NP_616183.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|20090108|ref|NP_616183.1| - 0.079 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ADK PF00406.17 gi|20090108|ref|NP_616183.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylate kinase TIP49 PF06068.8 gi|20090108|ref|NP_616183.1| - 0.1 11.2 0.2 1.6 7.3 0.0 2.0 2 0 0 2 2 2 0 TIP49 C-terminus DEAD PF00270.24 gi|20090108|ref|NP_616183.1| - 0.14 11.6 0.2 3.8 6.9 0.2 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase ATP-synt_ab PF00006.20 gi|20090108|ref|NP_616183.1| - 0.15 11.5 0.0 0.15 11.5 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.10 gi|20090108|ref|NP_616183.1| - 0.19 10.3 0.0 0.31 9.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_tran PF00005.22 gi|20090109|ref|NP_616184.1| - 6.8e-18 65.2 0.0 8.9e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20090109|ref|NP_616184.1| - 2.7e-16 59.6 0.5 9e-16 57.9 0.4 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20090109|ref|NP_616184.1| - 1.1e-05 25.5 0.0 0.094 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|20090109|ref|NP_616184.1| - 2.4e-05 23.7 0.0 4.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|20090109|ref|NP_616184.1| - 0.008 15.3 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|20090109|ref|NP_616184.1| - 0.017 15.2 0.0 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20090109|ref|NP_616184.1| - 0.021 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|20090109|ref|NP_616184.1| - 0.055 12.6 0.1 0.21 10.7 0.1 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|20090109|ref|NP_616184.1| - 0.075 12.2 0.1 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BPD_transp_1 PF00528.17 gi|20090110|ref|NP_616185.1| - 3.5e-30 104.9 11.8 3.5e-30 104.9 8.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20090110|ref|NP_616185.1| - 1.8e-08 33.6 0.1 1.8e-08 33.6 0.0 2.3 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C PepSY_TM_3 PF13706.1 gi|20090110|ref|NP_616185.1| - 0.17 11.3 0.0 0.17 11.3 0.0 2.5 3 0 0 3 3 3 0 PepSY-associated TM helix BPD_transp_1 PF00528.17 gi|20090111|ref|NP_616186.1| - 6.4e-39 133.3 13.6 6.4e-39 133.3 9.4 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PetM PF08041.6 gi|20090111|ref|NP_616186.1| - 1.1 8.7 5.7 0.78 9.2 1.8 2.5 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 Methyltransf_11 PF08241.7 gi|20090112|ref|NP_616187.1| - 4.6e-24 84.7 0.0 7.1e-24 84.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090112|ref|NP_616187.1| - 4.2e-19 68.6 0.0 5e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090112|ref|NP_616187.1| - 5.7e-15 55.4 0.0 7.8e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090112|ref|NP_616187.1| - 8.5e-15 54.9 0.0 1.5e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090112|ref|NP_616187.1| - 2.7e-13 49.5 0.0 7.4e-13 48.1 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|20090112|ref|NP_616187.1| - 4.9e-13 49.6 0.0 8.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090112|ref|NP_616187.1| - 1.2e-10 41.6 0.0 2.4e-10 40.7 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090112|ref|NP_616187.1| - 1.9e-09 37.5 0.0 6e-09 35.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090112|ref|NP_616187.1| - 7.2e-08 31.9 0.0 1.2e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20090112|ref|NP_616187.1| - 0.00012 21.6 0.0 0.00019 21.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|20090112|ref|NP_616187.1| - 0.00025 20.1 0.0 0.00031 19.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|20090112|ref|NP_616187.1| - 0.00067 18.8 0.0 0.00092 18.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|20090112|ref|NP_616187.1| - 0.001 18.2 0.0 0.0012 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GidB PF02527.10 gi|20090112|ref|NP_616187.1| - 0.0015 17.7 0.0 0.0049 16.0 0.0 1.7 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|20090112|ref|NP_616187.1| - 0.0054 15.9 0.0 0.0075 15.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB AdoMet_MTase PF07757.8 gi|20090112|ref|NP_616187.1| - 0.0095 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Methyltransf_15 PF09445.5 gi|20090112|ref|NP_616187.1| - 0.043 13.3 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TPMT PF05724.6 gi|20090112|ref|NP_616187.1| - 0.12 11.7 0.0 0.24 10.8 0.0 1.4 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) SBP_bac_5 PF00496.17 gi|20090113|ref|NP_616188.1| - 2e-89 300.0 2.7 2.4e-89 299.7 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Inhibitor_I34 PF10466.4 gi|20090113|ref|NP_616188.1| - 0.18 11.8 0.0 0.42 10.7 0.0 1.6 1 0 0 1 1 1 0 Saccharopepsin inhibitor I34 SBP_bac_5 PF00496.17 gi|20090114|ref|NP_616189.1| - 5.9e-89 298.4 2.2 7.6e-89 298.1 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.7 gi|20090115|ref|NP_616190.1| - 1.1e-23 83.4 0.0 2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090115|ref|NP_616190.1| - 8.1e-20 70.9 0.0 1.1e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090115|ref|NP_616190.1| - 9.5e-18 64.4 0.0 1.3e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090115|ref|NP_616190.1| - 7.7e-16 58.6 0.1 3.5e-15 56.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090115|ref|NP_616190.1| - 5.1e-14 52.4 0.0 1e-13 51.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090115|ref|NP_616190.1| - 3e-12 46.1 0.0 4.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|20090115|ref|NP_616190.1| - 8.2e-12 45.4 0.0 1.5e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090115|ref|NP_616190.1| - 5.2e-11 42.6 0.0 2.2e-10 40.6 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|20090115|ref|NP_616190.1| - 1.5e-07 30.9 0.1 3.2e-07 29.9 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|20090115|ref|NP_616190.1| - 1.8e-06 27.2 0.0 2.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|20090115|ref|NP_616190.1| - 0.00012 21.3 0.0 0.00017 20.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|20090115|ref|NP_616190.1| - 0.00013 21.1 0.0 0.00029 19.9 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|20090115|ref|NP_616190.1| - 0.00027 20.5 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|20090115|ref|NP_616190.1| - 0.0017 17.9 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|20090115|ref|NP_616190.1| - 0.0096 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|20090115|ref|NP_616190.1| - 0.013 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G N2227 PF07942.7 gi|20090115|ref|NP_616190.1| - 0.015 14.3 0.0 0.3 10.0 0.0 2.1 1 1 1 2 2 2 0 N2227-like protein TPMT PF05724.6 gi|20090115|ref|NP_616190.1| - 0.015 14.7 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|20090115|ref|NP_616190.1| - 0.023 14.0 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|20090115|ref|NP_616190.1| - 0.049 12.6 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Mur_ligase PF01225.20 gi|20090115|ref|NP_616190.1| - 0.055 13.5 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain HAD_2 PF13419.1 gi|20090116|ref|NP_616191.1| - 1.7e-26 93.5 0.0 2.3e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20090116|ref|NP_616191.1| - 5.3e-08 32.4 0.0 8.2e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|20090116|ref|NP_616191.1| - 2.5e-07 31.3 0.0 9.9e-06 26.1 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20090116|ref|NP_616191.1| - 0.00044 20.4 0.1 0.00067 19.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PNK3P PF08645.6 gi|20090116|ref|NP_616191.1| - 0.037 13.4 0.1 0.58 9.5 0.1 2.3 1 1 0 1 1 1 0 Polynucleotide kinase 3 phosphatase Y_phosphatase3C PF13348.1 gi|20090116|ref|NP_616191.1| - 0.08 13.0 0.1 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Tyrosine phosphatase family C-terminal region Ribosomal_S10 PF00338.17 gi|20090119|ref|NP_616194.1| - 3.3e-30 103.7 0.0 3.6e-30 103.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|20090120|ref|NP_616195.1| - 6.5e-59 198.5 0.0 9.3e-59 198.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|20090120|ref|NP_616195.1| - 1.4e-29 102.1 0.7 3.3e-29 100.9 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|20090120|ref|NP_616195.1| - 1.6e-17 63.3 3.3 2.9e-17 62.5 0.9 2.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 Miro PF08477.8 gi|20090120|ref|NP_616195.1| - 4.2e-07 30.4 0.0 0.00013 22.4 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|20090120|ref|NP_616195.1| - 5e-07 29.6 0.0 1.6e-06 28.0 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|20090120|ref|NP_616195.1| - 5.2e-06 26.0 0.3 1.4e-05 24.6 0.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|20090120|ref|NP_616195.1| - 0.0059 16.4 0.0 0.97 9.2 0.0 2.3 1 1 0 1 1 1 1 Dynamin family FeoB_N PF02421.13 gi|20090120|ref|NP_616195.1| - 0.011 15.0 0.1 0.39 9.9 0.0 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Gtr1_RagA PF04670.7 gi|20090120|ref|NP_616195.1| - 0.02 14.0 0.0 0.14 11.2 0.0 1.9 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region GTP_EFTU PF00009.22 gi|20090121|ref|NP_616196.1| - 2.9e-60 202.9 0.3 4.7e-60 202.2 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|20090121|ref|NP_616196.1| - 3.5e-31 107.2 0.5 4.9e-30 103.5 0.0 2.9 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|20090121|ref|NP_616196.1| - 2.1e-24 85.1 0.0 6.3e-24 83.6 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|20090121|ref|NP_616196.1| - 3.8e-24 84.3 1.3 3.8e-24 84.3 0.9 1.8 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|20090121|ref|NP_616196.1| - 3.6e-15 55.8 0.8 1.3e-14 54.0 0.3 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|20090121|ref|NP_616196.1| - 3.4e-05 23.7 0.1 0.0001 22.2 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|20090121|ref|NP_616196.1| - 0.038 13.2 0.2 0.47 9.6 0.1 2.5 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S7 PF00177.16 gi|20090122|ref|NP_616197.1| - 7.4e-37 126.1 3.7 8.8e-37 125.9 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|20090123|ref|NP_616198.1| - 7.1e-39 131.9 0.1 8.4e-39 131.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|161484938|ref|NP_616199.2| - 7.3e-22 76.7 2.7 7.1e-16 57.5 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|161484938|ref|NP_616199.2| - 4.5e-16 58.4 0.4 1.9e-14 53.2 0.1 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|161484938|ref|NP_616199.2| - 3.2e-07 29.8 0.4 0.012 15.2 0.1 2.5 3 0 0 3 3 3 2 KH domain KH_4 PF13083.1 gi|161484938|ref|NP_616199.2| - 6.3e-07 28.9 1.4 0.024 14.2 0.0 2.8 2 1 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|161484938|ref|NP_616199.2| - 0.03 13.9 6.0 0.54 9.9 0.3 2.9 3 0 0 3 3 3 0 KH domain Ribosomal_S5 PF00333.15 gi|161484938|ref|NP_616199.2| - 0.12 12.0 0.5 3.5 7.4 0.0 2.3 2 1 0 2 2 2 0 Ribosomal protein S5, N-terminal domain Ribosomal_L7Ae PF01248.21 gi|20090125|ref|NP_616200.1| - 4.4e-18 64.5 0.4 5e-18 64.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|20090126|ref|NP_616201.1| - 4.7e-50 170.3 1.6 7.2e-50 169.7 1.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 SpoIIP PF07454.6 gi|20090126|ref|NP_616201.1| - 0.046 12.8 0.1 0.091 11.9 0.0 1.5 1 0 0 1 1 1 0 Stage II sporulation protein P (SpoIIP) RNA_pol_Rpb1_1 PF04997.7 gi|20090127|ref|NP_616202.1| - 3.8e-90 302.5 0.1 8.8e-55 186.2 0.0 2.4 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|20090127|ref|NP_616202.1| - 2.6e-67 225.9 0.1 4.4e-67 225.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_5 PF04998.12 gi|20090127|ref|NP_616202.1| - 5.9e-31 107.7 0.0 1e-30 106.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|20090127|ref|NP_616202.1| - 8.6e-31 105.8 0.0 1.9e-30 104.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|20090127|ref|NP_616202.1| - 1.6e-30 105.9 0.0 3.4e-30 104.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 Yqai PF09466.5 gi|20090127|ref|NP_616202.1| - 0.094 12.7 0.1 25 4.9 0.0 2.9 3 0 0 3 3 3 0 Hypothetical protein Yqai RNA_pol_Rpb2_6 PF00562.23 gi|20090128|ref|NP_616203.1| - 4.4e-122 407.5 0.0 5.7e-122 407.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|20090128|ref|NP_616203.1| - 5.8e-27 93.7 0.1 1.8e-26 92.1 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|20090128|ref|NP_616203.1| - 3.4e-25 87.6 0.5 7.1e-25 86.5 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|20090128|ref|NP_616203.1| - 6.8e-17 61.1 1.4 1.4e-16 60.2 0.9 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-ribbon_3 PF13248.1 gi|20090128|ref|NP_616203.1| - 0.037 13.2 1.5 0.085 12.0 1.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|20090128|ref|NP_616203.1| - 0.041 13.5 0.5 12 5.6 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|20090128|ref|NP_616203.1| - 0.11 12.0 0.4 6.8 6.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb2_45 PF10385.4 gi|20090128|ref|NP_616203.1| - 0.14 11.9 0.2 0.39 10.5 0.1 1.7 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain DUF1451 PF07295.6 gi|20090128|ref|NP_616203.1| - 0.16 11.7 0.6 0.34 10.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|20090128|ref|NP_616203.1| - 0.19 11.5 0.3 0.37 10.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb2_1 PF04563.10 gi|20090129|ref|NP_616204.1| - 4.3e-58 195.5 1.2 9.6e-58 194.4 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|20090129|ref|NP_616204.1| - 6e-30 104.0 0.2 1.1e-29 103.2 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|20090129|ref|NP_616204.1| - 1e-23 82.8 0.0 1.7e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 CBS PF00571.23 gi|20090129|ref|NP_616204.1| - 0.084 12.6 0.2 0.66 9.8 0.1 2.4 1 1 0 1 1 1 0 CBS domain TerB-C PF15615.1 gi|20090129|ref|NP_616204.1| - 0.36 11.0 3.9 1.7 8.8 0.7 2.3 2 0 0 2 2 2 0 TerB-C domain RNA_pol_Rpb5_C PF01191.14 gi|20090130|ref|NP_616205.1| - 6.4e-29 99.3 0.2 6.9e-29 99.2 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain HisKA_2 PF07568.7 gi|20090131|ref|NP_616206.1| - 1.5e-34 117.6 0.6 1.5e-34 117.6 0.4 2.9 3 0 0 3 3 3 1 Histidine kinase PAS_9 PF13426.1 gi|20090131|ref|NP_616206.1| - 1.8e-29 102.1 0.0 2.4e-18 66.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|20090131|ref|NP_616206.1| - 6.4e-26 90.2 0.0 7.2e-17 61.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|20090131|ref|NP_616206.1| - 1.9e-19 69.6 0.3 8e-19 67.6 0.0 2.2 3 0 0 3 3 3 1 Response regulator receiver domain PAS PF00989.19 gi|20090131|ref|NP_616206.1| - 1.6e-16 60.0 0.1 1.5e-11 44.0 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|20090131|ref|NP_616206.1| - 3.1e-14 52.9 0.0 1.8e-11 44.0 0.0 2.3 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|20090131|ref|NP_616206.1| - 3.5e-10 39.5 0.1 8.6e-10 38.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20090131|ref|NP_616206.1| - 1.9e-06 27.5 0.0 2.7e-05 23.8 0.0 2.8 3 0 0 3 3 3 1 PAS domain HWE_HK PF07536.9 gi|20090131|ref|NP_616206.1| - 0.00017 21.9 0.1 0.00053 20.3 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20090131|ref|NP_616206.1| - 0.00018 21.2 0.0 0.0004 20.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF2075 PF09848.4 gi|20090131|ref|NP_616206.1| - 0.0037 16.2 1.1 0.0077 15.2 0.7 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TMF_TATA_bd PF12325.3 gi|20090131|ref|NP_616206.1| - 6.3 6.5 9.7 0.38 10.4 2.0 2.6 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding Response_reg PF00072.19 gi|20090132|ref|NP_616207.1| - 3.6e-20 72.0 0.2 4.2e-20 71.8 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain CamS PF07537.6 gi|20090132|ref|NP_616207.1| - 0.034 13.2 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 CamS sex pheromone cAM373 precursor Response_reg PF00072.19 gi|20090133|ref|NP_616208.1| - 1.4e-19 70.1 0.1 1.6e-19 69.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Epimerase_2 PF02350.14 gi|20090133|ref|NP_616208.1| - 0.05 12.3 0.1 0.068 11.9 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase MEDS PF14417.1 gi|20090134|ref|NP_616209.1| - 7.5e-94 312.1 0.1 7.5e-94 312.1 0.1 2.5 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20090134|ref|NP_616209.1| - 1.1e-84 279.5 0.3 6.7e-17 61.7 0.0 6.9 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|20090134|ref|NP_616209.1| - 1e-80 266.9 0.0 3.3e-15 56.0 0.0 6.7 7 0 0 7 7 6 6 PAS fold PAS PF00989.19 gi|20090134|ref|NP_616209.1| - 2.6e-59 197.9 0.0 3.8e-12 45.9 0.0 7.0 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.6 gi|20090134|ref|NP_616209.1| - 2.4e-49 165.3 0.8 4.1e-22 78.0 0.1 6.9 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|20090134|ref|NP_616209.1| - 1.7e-33 113.2 0.0 8.1e-06 25.5 0.0 5.9 5 0 0 5 5 5 5 PAS domain HATPase_c PF02518.21 gi|20090134|ref|NP_616209.1| - 2.4e-31 107.7 0.0 5.3e-31 106.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|20090134|ref|NP_616209.1| - 4.3e-14 52.9 0.0 1.5e-13 51.1 0.0 2.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|20090134|ref|NP_616209.1| - 2.5e-12 47.0 0.0 3.9e-11 43.1 0.0 3.0 4 0 0 4 4 3 1 GAF domain GAF_2 PF13185.1 gi|20090134|ref|NP_616209.1| - 5.2e-12 46.4 0.0 1.3e-11 45.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|20090134|ref|NP_616209.1| - 8.6e-12 44.8 0.1 8.6e-12 44.8 0.0 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|20090134|ref|NP_616209.1| - 1.2e-06 28.7 0.0 0.79 10.0 0.0 5.2 5 0 0 5 5 5 2 PAS domain HATPase_c_5 PF14501.1 gi|20090134|ref|NP_616209.1| - 1.5e-06 27.8 0.0 3.6e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|20090134|ref|NP_616209.1| - 0.00043 19.9 0.0 0.0012 18.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4146 PF13652.1 gi|20090134|ref|NP_616209.1| - 0.015 15.0 0.6 2.8 7.8 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4146) Syntaxin-6_N PF09177.6 gi|20090134|ref|NP_616209.1| - 0.89 10.0 19.0 4 7.9 3.7 4.7 4 0 0 4 4 4 0 Syntaxin 6, N-terminal Synaptobrevin PF00957.16 gi|20090134|ref|NP_616209.1| - 0.94 9.1 7.3 5.7 6.6 0.6 2.8 2 0 0 2 2 2 0 Synaptobrevin EMP24_GP25L PF01105.19 gi|20090134|ref|NP_616209.1| - 1.2 8.7 11.0 0.53 9.9 0.7 3.6 3 0 0 3 3 3 0 emp24/gp25L/p24 family/GOLD HALZ PF02183.13 gi|20090134|ref|NP_616209.1| - 2.7 7.8 21.6 0.46 10.2 1.7 3.3 3 0 0 3 3 2 0 Homeobox associated leucine zipper Sec20 PF03908.8 gi|20090134|ref|NP_616209.1| - 4.4 7.0 8.5 8.4 6.1 0.9 3.2 3 0 0 3 3 2 0 Sec20 SBP_bac_6 PF13343.1 gi|20090135|ref|NP_616210.1| - 3e-56 190.4 0.0 4.6e-56 189.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1858 PF08984.6 gi|20090135|ref|NP_616210.1| - 9.2e-13 47.6 0.1 2.6e-12 46.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1858) cobW PF02492.14 gi|20090136|ref|NP_616211.1| - 4.5e-16 58.7 0.0 5.8e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|20090136|ref|NP_616211.1| - 4.7e-06 25.5 0.2 0.0059 15.4 0.0 2.2 2 0 0 2 2 2 2 ArgK protein KTI12 PF08433.5 gi|20090136|ref|NP_616211.1| - 0.00039 19.7 0.0 0.00055 19.2 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MobB PF03205.9 gi|20090136|ref|NP_616211.1| - 0.002 17.8 0.1 0.0048 16.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|20090136|ref|NP_616211.1| - 0.004 16.8 0.0 0.005 16.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase NTPase_1 PF03266.10 gi|20090136|ref|NP_616211.1| - 0.0048 16.6 0.1 0.0068 16.1 0.1 1.5 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|20090136|ref|NP_616211.1| - 0.0066 16.1 0.0 0.021 14.5 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|20090136|ref|NP_616211.1| - 0.0067 16.4 0.0 0.0075 16.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|20090136|ref|NP_616211.1| - 0.012 14.7 0.0 0.022 13.8 0.0 1.4 2 0 0 2 2 2 0 Zeta toxin ATP_bind_1 PF03029.12 gi|20090136|ref|NP_616211.1| - 0.022 14.2 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|20090136|ref|NP_616211.1| - 0.026 13.9 0.0 0.045 13.2 0.0 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain RecA PF00154.16 gi|20090136|ref|NP_616211.1| - 0.058 12.4 0.1 0.11 11.5 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_35 PF14516.1 gi|20090136|ref|NP_616211.1| - 0.082 11.5 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|20090137|ref|NP_616212.1| - 1e-15 58.2 0.0 1.9e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090137|ref|NP_616212.1| - 7.2e-09 36.0 0.3 0.00019 21.5 0.2 2.7 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|20090137|ref|NP_616212.1| - 0.00024 21.2 0.1 0.0016 18.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20090137|ref|NP_616212.1| - 0.00035 20.6 0.1 0.00064 19.7 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|20090137|ref|NP_616212.1| - 0.00038 19.7 0.3 0.027 13.6 0.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20090137|ref|NP_616212.1| - 0.0013 18.2 0.1 0.0026 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20090137|ref|NP_616212.1| - 0.0015 18.9 1.5 0.026 14.8 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|20090137|ref|NP_616212.1| - 0.0065 16.2 0.0 3.5 7.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_15 PF13175.1 gi|20090137|ref|NP_616212.1| - 0.0077 15.3 0.0 3.3 6.6 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|20090137|ref|NP_616212.1| - 0.0077 15.6 0.0 0.028 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20090137|ref|NP_616212.1| - 0.01 15.0 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|20090137|ref|NP_616212.1| - 0.014 14.9 0.3 0.054 13.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|20090137|ref|NP_616212.1| - 0.029 13.8 0.0 0.053 12.9 0.0 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|20090137|ref|NP_616212.1| - 0.035 13.8 0.0 0.074 12.8 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|20090137|ref|NP_616212.1| - 0.036 13.7 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|20090137|ref|NP_616212.1| - 0.037 13.7 0.0 0.12 12.0 0.0 1.9 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|20090137|ref|NP_616212.1| - 0.05 13.4 0.1 0.67 9.8 0.0 2.5 2 1 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|20090137|ref|NP_616212.1| - 0.051 13.0 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|20090137|ref|NP_616212.1| - 0.057 13.3 0.0 0.19 11.6 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_PrkA PF08298.6 gi|20090137|ref|NP_616212.1| - 0.061 11.9 0.0 0.13 10.8 0.0 1.5 2 0 0 2 2 2 0 PrkA AAA domain PhoH PF02562.11 gi|20090137|ref|NP_616212.1| - 0.094 11.9 0.0 0.33 10.1 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein MEDS PF14417.1 gi|20090138|ref|NP_616213.1| - 1.9e-86 288.0 0.1 5.7e-85 283.1 0.0 3.2 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_3 PF08447.6 gi|20090138|ref|NP_616213.1| - 6e-75 247.4 0.8 2.5e-22 78.7 0.1 7.7 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.1 gi|20090138|ref|NP_616213.1| - 1.7e-69 230.7 0.6 4.1e-16 59.2 0.0 7.6 7 0 0 7 7 7 7 PAS domain PAS PF00989.19 gi|20090138|ref|NP_616213.1| - 2.3e-48 162.6 0.5 4.1e-16 58.7 0.0 7.9 7 1 0 7 7 7 7 PAS fold PAS_4 PF08448.5 gi|20090138|ref|NP_616213.1| - 4.7e-47 158.5 0.0 1.6e-14 53.8 0.0 7.3 7 0 0 7 7 7 5 PAS fold HisKA_2 PF07568.7 gi|20090138|ref|NP_616213.1| - 8.7e-31 105.6 2.3 8.7e-31 105.6 1.6 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|20090138|ref|NP_616213.1| - 4e-25 86.7 0.0 2.5e-09 36.6 0.0 5.2 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|20090138|ref|NP_616213.1| - 6.1e-09 35.5 0.2 2e-08 33.9 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|20090138|ref|NP_616213.1| - 7e-09 35.7 5.6 0.17 11.8 0.0 7.6 8 2 0 8 8 8 2 PAS fold PAS_10 PF13596.1 gi|20090138|ref|NP_616213.1| - 8.8e-08 32.3 0.0 0.0042 17.3 0.0 4.7 6 0 0 6 6 6 1 PAS domain PAS_11 PF14598.1 gi|20090138|ref|NP_616213.1| - 2.9e-06 27.1 0.0 0.053 13.4 0.0 4.1 5 0 0 5 5 4 2 PAS domain HWE_HK PF07536.9 gi|20090138|ref|NP_616213.1| - 0.011 16.1 1.4 0.054 13.9 0.1 2.7 2 0 0 2 2 2 0 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20090138|ref|NP_616213.1| - 0.016 14.9 0.0 0.062 13.0 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain AdoHcyase PF05221.12 gi|20090139|ref|NP_616214.1| - 1e-57 195.1 0.1 1.2e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|20090139|ref|NP_616214.1| - 1.2e-51 174.8 0.8 2.3e-51 173.8 0.6 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|20090139|ref|NP_616214.1| - 8.6e-09 34.7 0.1 1.5e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|20090139|ref|NP_616214.1| - 0.0002 20.7 0.0 0.00036 19.9 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|20090139|ref|NP_616214.1| - 0.042 13.4 0.2 0.091 12.3 0.1 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amidohydro_1 PF01979.15 gi|20090140|ref|NP_616215.1| - 2.8e-61 208.0 1.8 3.5e-61 207.6 1.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20090140|ref|NP_616215.1| - 1.2e-14 53.8 0.2 4.8e-14 51.9 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|20090140|ref|NP_616215.1| - 1.9e-13 50.4 0.5 9.6e-12 44.8 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|20090140|ref|NP_616215.1| - 3.7e-12 46.8 0.1 1.5e-11 44.8 0.1 2.2 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|20090140|ref|NP_616215.1| - 0.00051 19.0 0.0 0.00091 18.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase MCC-bdg_PDZ PF10506.4 gi|20090140|ref|NP_616215.1| - 0.016 15.0 0.1 0.039 13.7 0.1 1.6 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome HD PF01966.17 gi|20090141|ref|NP_616216.1| - 1e-15 57.8 0.7 1.9e-15 56.9 0.5 1.4 1 0 0 1 1 1 1 HD domain DUF137 PF02006.11 gi|20090142|ref|NP_616217.1| - 4.9e-76 254.0 2.7 5.9e-76 253.7 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 TMF_TATA_bd PF12325.3 gi|20090142|ref|NP_616217.1| - 0.027 14.1 0.6 0.049 13.3 0.4 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding TPP_enzyme_M PF00205.17 gi|20090142|ref|NP_616217.1| - 0.098 12.4 0.7 0.36 10.5 0.2 2.1 2 1 1 3 3 3 0 Thiamine pyrophosphate enzyme, central domain DUF1836 PF08876.6 gi|20090142|ref|NP_616217.1| - 0.11 12.2 0.2 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1836) GHMP_kinases_N PF00288.21 gi|20090143|ref|NP_616218.1| - 3.7e-08 33.3 1.2 8.6e-08 32.1 0.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|20090143|ref|NP_616218.1| - 0.00017 21.7 0.1 0.0033 17.5 0.0 2.4 2 0 0 2 2 2 1 GHMP kinases C terminal DFP PF04127.10 gi|20090144|ref|NP_616219.1| - 2.4e-50 170.7 0.1 9.2e-49 165.5 0.0 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|20090144|ref|NP_616219.1| - 1.1e-30 105.9 0.0 2.1e-30 105.0 0.0 1.5 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|20090144|ref|NP_616219.1| - 0.00026 21.0 1.3 0.0025 17.8 0.0 2.4 2 0 0 2 2 2 1 NADH(P)-binding Usp PF00582.21 gi|20090144|ref|NP_616219.1| - 0.0097 16.1 1.0 4.3 7.5 0.0 2.7 2 0 0 2 2 2 2 Universal stress protein family Glyco_trans_4_4 PF13579.1 gi|20090144|ref|NP_616219.1| - 0.065 13.3 0.8 0.24 11.5 0.6 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain eRF1_2 PF03464.10 gi|20090145|ref|NP_616220.1| - 4.5e-07 30.2 0.1 1.2e-06 28.9 0.0 1.8 1 0 0 1 1 1 1 eRF1 domain 2 IncA PF04156.9 gi|20090145|ref|NP_616220.1| - 0.06 12.9 4.9 0.12 11.9 3.4 1.4 1 0 0 1 1 1 0 IncA protein Mnd1 PF03962.10 gi|20090145|ref|NP_616220.1| - 0.32 10.6 3.4 0.65 9.6 2.4 1.5 1 0 0 1 1 1 0 Mnd1 family DUF4200 PF13863.1 gi|20090145|ref|NP_616220.1| - 0.81 9.6 11.6 18 5.3 5.3 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) Atg14 PF10186.4 gi|20090145|ref|NP_616220.1| - 0.86 8.4 5.9 1.4 7.8 4.1 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1275 PF06912.6 gi|20090146|ref|NP_616221.1| - 4.7e-54 182.7 13.4 5.4e-54 182.5 9.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) RseC_MucC PF04246.7 gi|20090146|ref|NP_616221.1| - 0.0034 16.9 6.7 0.018 14.6 0.5 2.3 2 0 0 2 2 2 2 Positive regulator of sigma(E), RseC/MucC DUF4407 PF14362.1 gi|20090146|ref|NP_616221.1| - 1.3 7.9 7.1 2.2 7.1 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) DUF2207 PF09972.4 gi|20090146|ref|NP_616221.1| - 9 4.7 9.9 0.36 9.3 2.7 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF485 PF04341.7 gi|20090147|ref|NP_616222.1| - 0.11 12.1 0.4 0.18 11.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Bromodomain PF00439.20 gi|20090149|ref|NP_616224.1| - 0.1 12.5 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Bromodomain Beta_helix PF13229.1 gi|20090150|ref|NP_616225.1| - 2.4e-41 141.1 133.9 6.2e-20 71.5 29.7 3.7 2 1 2 4 4 4 3 Right handed beta helix region NosD PF05048.8 gi|20090150|ref|NP_616225.1| - 9.9e-38 129.6 98.8 2.9e-17 62.6 25.9 3.3 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Tetraspannin PF00335.15 gi|20090150|ref|NP_616225.1| - 0.0039 16.4 0.1 0.011 15.0 0.1 1.8 1 0 0 1 1 1 1 Tetraspanin family Conotoxin PF02950.12 gi|20090150|ref|NP_616225.1| - 1.1 10.1 4.1 2.8 8.7 0.0 2.5 2 0 0 2 2 2 0 Conotoxin Pectate_lyase_3 PF12708.2 gi|20090150|ref|NP_616225.1| - 2.9 7.9 43.3 0.16 12.0 14.6 2.7 1 1 1 2 2 2 0 Pectate lyase superfamily protein FtsJ PF01728.14 gi|20090152|ref|NP_616227.1| - 1.7e-57 194.3 0.0 2.3e-57 193.9 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|20090152|ref|NP_616227.1| - 2e-08 33.8 1.6 3.7e-08 33.0 1.1 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.1 gi|20090152|ref|NP_616227.1| - 8.8e-06 25.5 0.0 3.5e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090152|ref|NP_616227.1| - 2.2e-05 25.0 0.1 0.0014 19.1 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090152|ref|NP_616227.1| - 5.9e-05 22.7 0.0 0.0014 18.2 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain CbiA PF01656.18 gi|20090152|ref|NP_616227.1| - 0.0031 16.9 0.1 0.006 16.0 0.1 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Methyltrans_Mon PF14314.1 gi|20090152|ref|NP_616227.1| - 0.056 11.2 0.0 0.075 10.8 0.0 1.1 1 0 0 1 1 1 0 Virus-capping methyltransferase Methyltransf_26 PF13659.1 gi|20090152|ref|NP_616227.1| - 0.071 13.1 0.0 0.22 11.5 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain PHP PF02811.14 gi|20090153|ref|NP_616228.1| - 8.4e-17 61.5 0.0 1.5e-16 60.6 0.0 1.4 1 1 0 1 1 1 1 PHP domain ADH_zinc_N PF00107.21 gi|20090153|ref|NP_616228.1| - 0.1 12.1 0.2 3.3 7.2 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase PHP PF02811.14 gi|20090155|ref|NP_616230.1| - 3.4e-13 49.7 0.1 4.8e-13 49.2 0.0 1.3 1 1 0 1 1 1 1 PHP domain PKD PF00801.15 gi|20090156|ref|NP_616231.1| - 5.9e-55 182.9 36.1 4e-18 64.9 0.8 4.8 4 0 0 4 4 4 4 PKD domain NosD PF05048.8 gi|20090156|ref|NP_616231.1| - 2.4e-51 174.1 30.2 2.4e-51 174.1 21.0 2.2 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20090156|ref|NP_616231.1| - 2.8e-06 27.1 26.3 2.8e-06 27.1 18.3 3.4 2 1 1 3 3 3 2 Right handed beta helix region Pectinesterase PF01095.14 gi|20090156|ref|NP_616231.1| - 0.0006 18.4 0.1 0.0014 17.2 0.1 1.6 1 0 0 1 1 1 1 Pectinesterase DUF1727 PF08353.5 gi|20090156|ref|NP_616231.1| - 0.025 14.1 2.4 26 4.4 0.0 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF1727) DUF4625 PF15418.1 gi|20090156|ref|NP_616231.1| - 0.069 13.2 4.6 6.4 6.9 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4625) Big_3_4 PF13754.1 gi|20090156|ref|NP_616231.1| - 8.9 6.7 40.5 0.048 13.9 3.8 5.4 6 1 0 6 6 6 0 Bacterial Ig-like domain (group 3) PKD PF00801.15 gi|20090157|ref|NP_616232.1| - 2.2e-54 181.0 34.2 1e-16 60.4 2.2 4.8 4 0 0 4 4 4 4 PKD domain DPPIV_N PF00930.16 gi|20090157|ref|NP_616232.1| - 3.7e-08 32.3 8.3 0.005 15.4 0.0 5.7 3 1 3 6 6 6 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF4625 PF15418.1 gi|20090157|ref|NP_616232.1| - 0.0013 18.8 0.2 1.3 9.1 0.0 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF4625) Kelch_4 PF13418.1 gi|20090157|ref|NP_616232.1| - 0.0066 16.1 5.8 6.7 6.5 0.2 5.9 6 1 0 6 6 6 2 Galactose oxidase, central domain Imm36 PF15597.1 gi|20090157|ref|NP_616232.1| - 0.067 13.3 0.0 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 Immunity protein 36 Salt_tol_Pase PF09506.5 gi|20090157|ref|NP_616232.1| - 0.2 10.1 0.1 4.6 5.6 0.0 2.2 1 1 1 2 2 2 0 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) NTP_transf_2 PF01909.18 gi|20090159|ref|NP_616234.1| - 8e-16 58.1 1.6 9.5e-16 57.9 1.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|20090159|ref|NP_616234.1| - 0.0065 16.5 0.0 0.007 16.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF2003 PF09404.5 gi|20090159|ref|NP_616234.1| - 0.024 13.0 0.0 0.025 12.9 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF2003) PAC2 PF09754.4 gi|20090159|ref|NP_616234.1| - 0.12 12.2 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 PAC2 family DUF86 PF01934.12 gi|20090160|ref|NP_616235.1| - 2e-28 98.3 0.3 2.4e-28 98.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2117 PF09890.4 gi|20090161|ref|NP_616236.1| - 2.4e-16 59.5 0.0 2.7e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) RbcS PF12338.3 gi|20090161|ref|NP_616236.1| - 0.18 11.6 0.6 0.31 10.8 0.4 1.4 1 0 0 1 1 1 0 Ribulose-1,5-bisphosphate carboxylase small subunit T2SE PF00437.15 gi|20090163|ref|NP_616238.1| - 5e-32 110.8 0.0 7.8e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|20090163|ref|NP_616238.1| - 0.0022 17.4 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|20090163|ref|NP_616238.1| - 0.0037 17.3 0.0 0.11 12.6 0.0 3.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20090163|ref|NP_616238.1| - 0.032 14.2 0.1 0.18 11.7 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|20090163|ref|NP_616238.1| - 0.066 12.7 0.0 0.18 11.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|20090163|ref|NP_616238.1| - 0.17 12.3 1.6 0.35 11.3 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein CDC45 PF02724.9 gi|20090163|ref|NP_616238.1| - 0.69 7.8 12.4 1.1 7.1 8.6 1.2 1 0 0 1 1 1 0 CDC45-like protein Hid1 PF12722.2 gi|20090163|ref|NP_616238.1| - 2.7 5.5 12.0 5.2 4.6 8.3 1.4 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Ndc1_Nup PF09531.5 gi|20090163|ref|NP_616238.1| - 9.2 4.5 5.8 13 4.0 4.1 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF2207 PF09972.4 gi|20090164|ref|NP_616239.1| - 0.086 11.4 1.1 0.087 11.3 0.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tetraspannin PF00335.15 gi|20090164|ref|NP_616239.1| - 0.35 10.1 5.4 0.31 10.2 0.4 2.0 1 1 1 2 2 2 0 Tetraspanin family Radical_SAM PF04055.16 gi|20090166|ref|NP_616241.1| - 4e-19 69.3 0.0 7.9e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|20090166|ref|NP_616241.1| - 1.2e-08 35.1 0.3 4.2e-08 33.4 0.2 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|20090166|ref|NP_616241.1| - 1.6e-08 34.7 0.3 7.2e-08 32.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20090166|ref|NP_616241.1| - 2.6e-06 27.4 0.2 1.1e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain YfkB PF08756.5 gi|20090166|ref|NP_616241.1| - 0.012 15.1 0.1 0.027 14.0 0.1 1.5 1 0 0 1 1 1 0 YfkB-like domain DUF3659 PF12396.3 gi|20090167|ref|NP_616242.1| - 0.027 14.1 1.5 0.049 13.3 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) IDEAL PF08858.5 gi|20090167|ref|NP_616242.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 IDEAL domain DUF2971 PF11185.3 gi|20090168|ref|NP_616243.1| - 2.5e-08 34.5 1.4 5e-08 33.5 1.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2971) SLT_beta PF02258.11 gi|20090168|ref|NP_616243.1| - 0.0012 18.6 0.1 0.047 13.5 0.0 2.2 2 0 0 2 2 2 1 Shiga-like toxin beta subunit NTP_transf_2 PF01909.18 gi|20090169|ref|NP_616244.1| - 1e-13 51.3 1.3 1.2e-13 51.2 0.9 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2003 PF09404.5 gi|20090169|ref|NP_616244.1| - 0.069 11.5 0.0 0.069 11.5 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF2003) DUF2117 PF09890.4 gi|20090170|ref|NP_616245.1| - 2.4e-85 285.1 0.0 3.1e-85 284.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) AAA_19 PF13245.1 gi|20090170|ref|NP_616245.1| - 0.01 15.5 0.4 2.5 7.9 0.1 3.0 3 0 0 3 3 3 0 Part of AAA domain NAD_kinase PF01513.16 gi|20090170|ref|NP_616245.1| - 0.054 12.2 0.1 0.096 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP-NAD kinase Peptidase_M23 PF01551.17 gi|20090170|ref|NP_616245.1| - 0.12 12.4 0.0 18 5.4 0.0 3.1 3 0 0 3 3 3 0 Peptidase family M23 Lactamase_B_3 PF13483.1 gi|20090171|ref|NP_616246.1| - 4.6e-27 94.7 0.0 6.9e-27 94.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|20090171|ref|NP_616246.1| - 4.3e-18 65.5 0.0 6.6e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20090171|ref|NP_616246.1| - 1.1e-08 34.9 2.6 1.5e-08 34.5 0.6 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Prismane PF03063.15 gi|20090172|ref|NP_616247.1| - 1e-129 433.2 0.0 1.2e-129 433.0 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DUF2088 PF09861.4 gi|20090174|ref|NP_616249.1| - 2.3e-71 239.0 0.0 3.6e-71 238.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|20090174|ref|NP_616249.1| - 0.00043 19.8 0.0 0.00059 19.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) potato_inhibit PF00280.13 gi|20090174|ref|NP_616249.1| - 0.053 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Potato inhibitor I family DUF2088 PF09861.4 gi|20090175|ref|NP_616250.1| - 1.4e-74 249.5 0.0 2.2e-74 248.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|20090175|ref|NP_616250.1| - 0.02 14.3 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) PABP PF00658.13 gi|20090175|ref|NP_616250.1| - 0.046 13.3 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Poly-adenylate binding protein, unique domain DDE_Tnp_IS1 PF03400.8 gi|20090176|ref|NP_616251.1| - 1.5e-13 50.9 0.2 1.8e-13 50.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20090177|ref|NP_616252.1| - 1.5e-06 27.6 0.0 3e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20090177|ref|NP_616252.1| - 7.9e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20090177|ref|NP_616252.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20090177|ref|NP_616252.1| - 0.00065 19.8 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20090177|ref|NP_616252.1| - 0.004 16.6 0.0 0.022 14.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20090177|ref|NP_616252.1| - 0.0058 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20090177|ref|NP_616252.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20090177|ref|NP_616252.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20090177|ref|NP_616252.1| - 0.017 15.0 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20090177|ref|NP_616252.1| - 0.047 13.6 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20090177|ref|NP_616252.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20090177|ref|NP_616252.1| - 0.078 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20090177|ref|NP_616252.1| - 0.13 12.1 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20090177|ref|NP_616252.1| - 0.7 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|20090177|ref|NP_616252.1| - 1.8 8.3 6.2 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|20090177|ref|NP_616252.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) SSF PF00474.12 gi|20090178|ref|NP_616253.1| - 2.8e-59 200.7 43.7 4.3e-59 200.1 30.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Asparaginase PF00710.15 gi|20090179|ref|NP_616254.1| - 4.9e-88 295.0 0.1 5.7e-88 294.7 0.1 1.0 1 0 0 1 1 1 1 Asparaginase Lyase_1 PF00206.15 gi|20090180|ref|NP_616255.1| - 4.8e-63 213.2 0.0 8.5e-63 212.4 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|20090180|ref|NP_616255.1| - 6.8e-12 45.2 0.1 4.7e-11 42.5 0.0 2.4 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Paramyx_P_V_C PF03210.8 gi|20090180|ref|NP_616255.1| - 0.025 14.4 0.3 0.057 13.2 0.2 1.6 1 1 0 1 1 1 0 Paramyxovirus P/V phosphoprotein C-terminal Methyltransf_11 PF08241.7 gi|20090181|ref|NP_616256.1| - 4e-25 88.1 0.0 5.6e-25 87.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090181|ref|NP_616256.1| - 2.4e-22 79.1 0.0 3.3e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|20090181|ref|NP_616256.1| - 2.2e-21 76.0 0.0 2.5e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090181|ref|NP_616256.1| - 1e-19 70.8 0.0 1.3e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090181|ref|NP_616256.1| - 5.4e-17 62.0 0.0 7.8e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090181|ref|NP_616256.1| - 5.9e-14 52.2 0.0 8.3e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090181|ref|NP_616256.1| - 1.4e-13 51.4 0.0 2e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|20090181|ref|NP_616256.1| - 4.8e-07 29.3 0.0 7.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|20090181|ref|NP_616256.1| - 2.7e-05 24.1 0.0 4.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|20090181|ref|NP_616256.1| - 3.2e-05 22.7 0.0 4.4e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.6 gi|20090181|ref|NP_616256.1| - 3.8e-05 23.1 0.0 5.3e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20090181|ref|NP_616256.1| - 0.00012 21.3 0.0 0.00018 20.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|20090181|ref|NP_616256.1| - 0.0014 17.6 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|20090181|ref|NP_616256.1| - 0.0045 16.3 0.0 0.014 14.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|20090181|ref|NP_616256.1| - 0.051 13.2 0.1 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase DREV PF05219.7 gi|20090181|ref|NP_616256.1| - 0.061 12.1 0.0 0.089 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase PCMT PF01135.14 gi|20090181|ref|NP_616256.1| - 0.064 12.7 0.1 0.23 10.9 0.0 1.7 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NNMT_PNMT_TEMT PF01234.12 gi|20090181|ref|NP_616256.1| - 0.087 11.7 0.0 0.16 10.8 0.0 1.4 1 1 0 1 1 1 0 NNMT/PNMT/TEMT family adh_short PF00106.20 gi|20090182|ref|NP_616257.1| - 1.2e-23 83.8 0.0 1.8e-23 83.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|20090182|ref|NP_616257.1| - 1.6e-08 34.4 0.0 2.5e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|20090182|ref|NP_616257.1| - 8.2e-06 25.1 0.0 9.5e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NAD_binding_10 PF13460.1 gi|20090182|ref|NP_616257.1| - 0.00047 20.2 0.0 0.00063 19.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|20090182|ref|NP_616257.1| - 0.0011 17.9 0.0 0.0014 17.5 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein MEDS PF14417.1 gi|20090183|ref|NP_616258.1| - 2.4e-89 297.4 1.9 1.7e-88 294.6 0.0 3.2 4 0 0 4 4 4 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20090183|ref|NP_616258.1| - 1.5e-73 243.8 2.2 3.6e-16 59.4 0.0 7.5 7 0 0 7 7 7 6 PAS domain PocR PF10114.4 gi|20090183|ref|NP_616258.1| - 2.1e-69 232.1 0.0 5e-69 230.8 0.0 1.7 1 0 0 1 1 1 1 Sensory domain found in PocR PAS_4 PF08448.5 gi|20090183|ref|NP_616258.1| - 4.5e-54 181.1 0.0 5.7e-13 48.8 0.0 7.2 7 0 0 7 7 7 6 PAS fold PAS PF00989.19 gi|20090183|ref|NP_616258.1| - 8.1e-49 164.1 0.4 4.8e-18 64.9 0.0 7.2 7 0 0 7 7 7 6 PAS fold PAS_3 PF08447.6 gi|20090183|ref|NP_616258.1| - 5.2e-48 161.0 0.0 5.1e-16 58.5 0.0 6.8 6 0 0 6 6 6 6 PAS fold HisKA_2 PF07568.7 gi|20090183|ref|NP_616258.1| - 1.1e-31 108.5 1.3 1.1e-31 108.5 0.9 4.4 4 0 0 4 4 4 1 Histidine kinase PAS_8 PF13188.1 gi|20090183|ref|NP_616258.1| - 1.3e-30 104.2 0.1 6.5e-09 35.3 0.0 6.3 6 0 0 6 6 6 4 PAS domain HATPase_c PF02518.21 gi|20090183|ref|NP_616258.1| - 3.2e-13 49.3 0.3 1.1e-12 47.6 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|20090183|ref|NP_616258.1| - 1e-10 41.8 0.0 0.012 15.9 0.0 5.2 5 0 0 5 5 5 3 PAS domain PAS_7 PF12860.2 gi|20090183|ref|NP_616258.1| - 3.3e-06 27.0 1.6 3 7.8 0.1 7.1 7 2 0 7 7 6 1 PAS fold HATPase_c_2 PF13581.1 gi|20090183|ref|NP_616258.1| - 1.5e-05 24.7 0.1 3.4e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|20090183|ref|NP_616258.1| - 9.2e-05 22.3 0.0 0.083 12.8 0.0 4.6 5 0 0 5 5 5 1 PAS domain HATPase_c_3 PF13589.1 gi|20090183|ref|NP_616258.1| - 0.027 14.1 0.1 0.13 11.9 0.0 2.2 2 0 0 2 2 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|20090183|ref|NP_616258.1| - 0.066 13.6 0.1 0.066 13.6 0.0 3.0 3 0 0 3 3 3 0 HWE histidine kinase MEKHLA PF08670.6 gi|20090183|ref|NP_616258.1| - 0.084 12.4 0.2 16 4.9 0.0 3.5 4 0 0 4 4 4 0 MEKHLA domain Gate PF07670.9 gi|20090185|ref|NP_616260.1| - 5.9e-17 61.5 17.7 4.6e-08 32.9 0.5 3.2 2 1 1 3 3 3 3 Nucleoside recognition ABC1 PF03109.11 gi|20090186|ref|NP_616261.1| - 6.2e-27 93.9 0.2 1.6e-26 92.5 0.0 1.9 2 0 0 2 2 2 1 ABC1 family RIO1 PF01163.17 gi|20090186|ref|NP_616261.1| - 2.4e-07 30.2 0.0 5.3e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|20090186|ref|NP_616261.1| - 7.7e-05 21.9 0.2 0.0021 17.2 0.1 2.5 1 1 1 2 2 2 1 Protein kinase domain WaaY PF06176.6 gi|20090186|ref|NP_616261.1| - 0.00049 19.3 0.2 0.00087 18.5 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) APH PF01636.18 gi|20090186|ref|NP_616261.1| - 0.0021 17.8 0.3 0.013 15.2 0.6 2.0 2 0 0 2 2 2 1 Phosphotransferase enzyme family HMA PF00403.21 gi|20090187|ref|NP_616262.1| - 8.3e-16 57.8 1.4 9.8e-16 57.6 0.9 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain SHOCT PF09851.4 gi|20090188|ref|NP_616263.1| - 4e-12 45.1 4.0 5e-12 44.8 2.8 1.1 1 0 0 1 1 1 1 Short C-terminal domain DUF1517 PF07466.6 gi|20090188|ref|NP_616263.1| - 0.0052 15.8 0.0 0.0055 15.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1517) OAD_gamma PF04277.8 gi|20090188|ref|NP_616263.1| - 0.022 15.1 0.0 0.027 14.8 0.0 1.1 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain GvpG PF05120.7 gi|20090188|ref|NP_616263.1| - 0.2 11.4 0.9 0.25 11.1 0.6 1.3 1 1 0 1 1 1 0 Gas vesicle protein G AA_permease_2 PF13520.1 gi|20090189|ref|NP_616264.1| - 1.4e-34 119.4 52.3 1.9e-34 118.9 36.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|20090189|ref|NP_616264.1| - 3.7e-17 61.8 51.6 1.8e-16 59.5 35.8 1.9 1 1 0 1 1 1 1 Amino acid permease TctB PF07331.6 gi|20090190|ref|NP_616265.1| - 0.12 12.0 8.8 0.15 11.6 6.1 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Yip1 PF04893.12 gi|20090190|ref|NP_616265.1| - 0.15 11.5 8.1 0.17 11.4 5.6 1.1 1 0 0 1 1 1 0 Yip1 domain Sec62 PF03839.11 gi|20090190|ref|NP_616265.1| - 0.87 8.9 5.6 1 8.7 3.9 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 DUF2951 PF11166.3 gi|20090190|ref|NP_616265.1| - 1.1 9.1 3.8 1.6 8.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) PHO4 PF01384.15 gi|20090190|ref|NP_616265.1| - 1.3 7.6 6.1 1.7 7.2 4.2 1.2 1 0 0 1 1 1 0 Phosphate transporter family Phageshock_PspG PF09583.5 gi|20090190|ref|NP_616265.1| - 1.9 8.6 12.0 0.65 10.0 1.5 2.1 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) DUF4342 PF14242.1 gi|20090190|ref|NP_616265.1| - 1.9 8.2 6.6 3.3 7.5 1.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) Claudin_2 PF13903.1 gi|20090190|ref|NP_616265.1| - 2.1 7.9 6.2 2.5 7.7 4.3 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Ldr_toxin PF13940.1 gi|20090190|ref|NP_616265.1| - 2.8 7.7 7.2 0.72 9.6 0.1 2.6 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system Tetraspannin PF00335.15 gi|20090190|ref|NP_616265.1| - 4 6.6 8.2 4.3 6.5 5.7 1.1 1 0 0 1 1 1 0 Tetraspanin family YHS PF04945.8 gi|20090191|ref|NP_616266.1| - 3.1e-08 33.3 0.1 4.3e-08 32.8 0.1 1.2 1 0 0 1 1 1 1 YHS domain DUF3417 PF11897.3 gi|20090191|ref|NP_616266.1| - 0.05 13.5 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) TauE PF01925.14 gi|20090192|ref|NP_616267.1| - 3.3e-37 128.2 34.2 3.8e-37 128.0 23.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3307 PF11750.3 gi|20090192|ref|NP_616267.1| - 0.55 9.9 3.9 1.2 8.8 2.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3307) FeoB_C PF07664.7 gi|20090193|ref|NP_616268.1| - 3.3 7.2 6.5 5.6 6.4 0.3 3.2 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus Polysacc_synt_C PF14667.1 gi|20090194|ref|NP_616269.1| - 0.018 14.8 3.3 0.021 14.6 2.3 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF2975 PF11188.3 gi|20090194|ref|NP_616269.1| - 0.092 12.4 1.4 0.11 12.1 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) MatE PF01554.13 gi|20090194|ref|NP_616269.1| - 0.13 11.8 2.7 0.32 10.5 2.0 1.5 1 1 0 1 1 1 0 MatE 2-Hacid_dh_C PF02826.14 gi|20090195|ref|NP_616270.1| - 1.6e-66 222.8 0.5 2.2e-66 222.3 0.1 1.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|20090195|ref|NP_616270.1| - 6.4e-29 100.0 0.1 7.5e-29 99.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|20090195|ref|NP_616270.1| - 0.00015 21.6 0.2 0.00024 20.9 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|20090195|ref|NP_616270.1| - 0.0002 21.7 0.4 0.0012 19.1 0.0 2.4 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|20090195|ref|NP_616270.1| - 0.025 15.1 0.1 0.047 14.2 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AdoHcyase_NAD PF00670.16 gi|20090195|ref|NP_616270.1| - 0.04 13.7 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|20090195|ref|NP_616270.1| - 0.061 12.6 0.0 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|20090195|ref|NP_616270.1| - 0.079 12.9 0.1 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 NADH(P)-binding DUF4405 PF14358.1 gi|20090196|ref|NP_616271.1| - 0.019 15.1 11.0 0.026 14.6 7.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) Ferric_reduct PF01794.14 gi|20090196|ref|NP_616271.1| - 0.044 13.8 6.5 0.052 13.6 4.5 1.1 1 0 0 1 1 1 0 Ferric reductase like transmembrane component Cytochrom_B561 PF03188.11 gi|20090196|ref|NP_616271.1| - 0.063 13.1 2.5 0.079 12.7 1.7 1.1 1 0 0 1 1 1 0 Eukaryotic cytochrome b561 Ni_hydr_CYTB PF01292.15 gi|20090196|ref|NP_616271.1| - 0.093 12.1 5.5 0.1 11.9 3.8 1.1 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|20090196|ref|NP_616271.1| - 0.11 11.8 5.9 0.12 11.6 4.1 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF2867 PF11066.3 gi|20090196|ref|NP_616271.1| - 0.12 12.1 0.2 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2867) Sdh_cyt PF01127.17 gi|20090196|ref|NP_616271.1| - 2.7 7.8 11.8 5.5 6.8 6.0 2.0 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HMA PF00403.21 gi|20090197|ref|NP_616272.1| - 1.2e-05 25.3 2.3 1.6e-05 24.9 1.6 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain HMA PF00403.21 gi|20090198|ref|NP_616273.1| - 1e-19 70.4 4.8 1.1e-19 70.2 3.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2674 PF10879.3 gi|20090198|ref|NP_616273.1| - 0.00027 20.6 0.4 0.0039 16.8 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2674) TusA PF01206.12 gi|20090198|ref|NP_616273.1| - 0.00033 20.1 0.0 0.00061 19.3 0.0 1.6 1 1 0 1 1 1 1 Sulfurtransferase TusA Beta_elim_lyase PF01212.16 gi|20090198|ref|NP_616273.1| - 0.034 13.2 0.0 0.034 13.2 0.0 1.0 1 0 0 1 1 1 0 Beta-eliminating lyase RRM_3 PF08777.6 gi|20090198|ref|NP_616273.1| - 0.041 13.7 0.3 0.053 13.3 0.2 1.2 1 0 0 1 1 1 0 RNA binding motif MAP PF03642.8 gi|20090198|ref|NP_616273.1| - 0.092 12.9 0.2 0.11 12.7 0.2 1.2 1 0 0 1 1 1 0 MAP domain Thioredoxin_3 PF13192.1 gi|20090198|ref|NP_616273.1| - 0.11 12.2 1.1 0.18 11.6 0.8 1.4 1 1 0 1 1 1 0 Thioredoxin domain HMA PF00403.21 gi|20090199|ref|NP_616274.1| - 3e-08 33.7 0.1 3.4e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain MafB19-deam PF14437.1 gi|20090199|ref|NP_616274.1| - 0.093 12.3 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 MafB19-like deaminase HxlR PF01638.12 gi|20090200|ref|NP_616275.1| - 8.8e-24 82.9 0.1 1e-23 82.7 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|20090200|ref|NP_616275.1| - 4.5e-05 23.1 0.0 6.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|20090200|ref|NP_616275.1| - 8.9e-05 22.1 0.0 0.00016 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|20090200|ref|NP_616275.1| - 0.00011 21.8 0.1 0.00076 19.2 0.0 2.0 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|20090200|ref|NP_616275.1| - 0.00039 19.7 0.0 0.00071 18.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20090200|ref|NP_616275.1| - 0.002 17.7 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|20090200|ref|NP_616275.1| - 0.0055 16.4 0.0 0.0092 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix B-block_TFIIIC PF04182.7 gi|20090200|ref|NP_616275.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|20090200|ref|NP_616275.1| - 0.04 13.8 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF505 PF04458.7 gi|20090200|ref|NP_616275.1| - 0.061 11.4 0.0 0.073 11.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_27 PF13463.1 gi|20090200|ref|NP_616275.1| - 0.12 12.7 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|20090200|ref|NP_616275.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.16 gi|20090200|ref|NP_616275.1| - 0.12 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|20090200|ref|NP_616275.1| - 0.15 11.8 0.1 0.36 10.6 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain CbiA PF01656.18 gi|20090201|ref|NP_616276.1| - 7.6e-24 84.2 0.0 9.5e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|20090201|ref|NP_616276.1| - 2.5e-08 33.9 0.0 1.2e-06 28.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|20090201|ref|NP_616276.1| - 6.9e-06 25.7 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.10 gi|20090201|ref|NP_616276.1| - 9.6e-06 24.8 0.4 1.6e-05 24.1 0.2 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|20090201|ref|NP_616276.1| - 1.3e-05 24.6 0.0 0.00015 21.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20090201|ref|NP_616276.1| - 1.4e-05 24.6 0.2 2.3e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain SRP54 PF00448.17 gi|20090201|ref|NP_616276.1| - 1.7e-05 24.3 0.0 0.00013 21.4 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|20090201|ref|NP_616276.1| - 2.1e-05 24.2 0.1 4.5e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|20090201|ref|NP_616276.1| - 4.1e-05 24.3 0.1 6.7e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20090201|ref|NP_616276.1| - 4.2e-05 22.8 0.0 6.5e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Fer4_NifH PF00142.13 gi|20090201|ref|NP_616276.1| - 6.1e-05 22.3 0.5 0.00027 20.2 0.1 2.1 3 0 0 3 3 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|20090201|ref|NP_616276.1| - 9.7e-05 21.5 0.1 0.00036 19.6 0.1 1.8 2 0 0 2 2 2 1 ATPase MipZ DUF87 PF01935.12 gi|20090201|ref|NP_616276.1| - 0.00021 21.1 0.2 0.00037 20.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|20090201|ref|NP_616276.1| - 0.0013 17.4 0.1 0.0046 15.6 0.1 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain YhjQ PF06564.7 gi|20090201|ref|NP_616276.1| - 0.0016 17.8 0.0 0.023 14.0 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein FtsK_SpoIIIE PF01580.13 gi|20090201|ref|NP_616276.1| - 0.002 17.6 0.1 0.0042 16.5 0.1 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family KaiC PF06745.8 gi|20090201|ref|NP_616276.1| - 0.0022 17.1 0.1 0.0035 16.5 0.0 1.6 1 1 0 1 1 1 1 KaiC Zeta_toxin PF06414.7 gi|20090201|ref|NP_616276.1| - 0.0025 16.9 0.1 0.0039 16.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Mur_ligase_M PF08245.7 gi|20090201|ref|NP_616276.1| - 0.0042 17.1 0.0 0.39 10.7 0.0 2.2 2 0 0 2 2 2 1 Mur ligase middle domain ArgK PF03308.11 gi|20090201|ref|NP_616276.1| - 0.0045 15.7 0.3 0.012 14.4 0.0 1.7 2 0 0 2 2 2 1 ArgK protein MMR_HSR1 PF01926.18 gi|20090201|ref|NP_616276.1| - 0.005 16.7 0.3 0.038 13.9 0.2 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|20090201|ref|NP_616276.1| - 0.011 15.3 0.2 0.025 14.1 0.1 1.6 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein Thymidylate_kin PF02223.12 gi|20090201|ref|NP_616276.1| - 0.012 15.0 0.0 0.039 13.3 0.0 1.9 3 0 0 3 3 1 0 Thymidylate kinase AAA_18 PF13238.1 gi|20090201|ref|NP_616276.1| - 0.013 15.7 0.0 0.029 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|20090201|ref|NP_616276.1| - 0.015 15.5 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|20090201|ref|NP_616276.1| - 0.016 15.7 0.1 0.2 12.1 0.1 2.5 3 0 0 3 3 2 0 Miro-like protein AAA_16 PF13191.1 gi|20090201|ref|NP_616276.1| - 0.017 15.1 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|20090201|ref|NP_616276.1| - 0.019 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|20090201|ref|NP_616276.1| - 0.019 14.4 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|20090201|ref|NP_616276.1| - 0.03 13.8 0.3 0.053 13.0 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|20090201|ref|NP_616276.1| - 0.032 13.1 0.0 0.047 12.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|20090201|ref|NP_616276.1| - 0.034 14.3 0.0 0.079 13.1 0.0 1.8 2 0 0 2 2 1 0 RNA helicase Abhydrolase_5 PF12695.2 gi|20090201|ref|NP_616276.1| - 0.055 13.2 0.0 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 Alpha/beta hydrolase family NTPase_1 PF03266.10 gi|20090201|ref|NP_616276.1| - 0.07 12.8 0.4 0.26 10.9 0.1 2.0 2 1 1 3 3 3 0 NTPase IstB_IS21 PF01695.12 gi|20090201|ref|NP_616276.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein G-alpha PF00503.15 gi|20090201|ref|NP_616276.1| - 0.075 11.7 0.0 0.2 10.3 0.0 1.6 2 0 0 2 2 2 0 G-protein alpha subunit LpxK PF02606.9 gi|20090201|ref|NP_616276.1| - 0.088 11.7 0.1 0.28 10.1 0.1 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase TrkA_N PF02254.13 gi|20090201|ref|NP_616276.1| - 0.11 12.5 0.1 0.87 9.6 0.0 2.3 2 1 1 3 3 3 0 TrkA-N domain NB-ARC PF00931.17 gi|20090201|ref|NP_616276.1| - 0.16 10.7 0.1 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|20090201|ref|NP_616276.1| - 0.18 11.3 0.1 0.41 10.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|20090201|ref|NP_616276.1| - 0.19 11.3 0.3 0.4 10.3 0.2 1.4 1 0 0 1 1 1 0 NACHT domain Flavin_Reduct PF01613.13 gi|20090202|ref|NP_616277.1| - 3.8e-18 65.8 0.0 4.9e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain E1-E2_ATPase PF00122.15 gi|20090203|ref|NP_616278.1| - 2.4e-59 200.1 0.7 4.4e-59 199.3 0.5 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|20090203|ref|NP_616278.1| - 7.7e-47 160.4 2.6 7.7e-47 160.4 1.8 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|20090203|ref|NP_616278.1| - 1.3e-43 146.9 2.5 9.2e-14 51.3 0.0 3.7 3 0 0 3 3 3 3 Heavy-metal-associated domain HAD PF12710.2 gi|20090203|ref|NP_616278.1| - 6.9e-18 65.4 0.0 1.2e-17 64.6 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20090203|ref|NP_616278.1| - 6.1e-06 25.9 3.1 0.00058 19.5 1.0 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase MafB19-deam PF14437.1 gi|20090203|ref|NP_616278.1| - 0.0014 18.2 1.1 5.4 6.6 0.1 3.3 3 0 0 3 3 3 2 MafB19-like deaminase Pox_A3L PF05288.6 gi|20090203|ref|NP_616278.1| - 0.22 11.2 0.2 29 4.4 0.0 2.6 2 0 0 2 2 2 0 Poxvirus A3L Protein Tox-PL-2 PF15643.1 gi|20090203|ref|NP_616278.1| - 0.29 11.1 1.0 32 4.5 0.1 2.9 1 1 1 2 2 2 0 Papain fold toxin 2 ETRAMP PF09716.5 gi|20090204|ref|NP_616279.1| - 0.0084 16.0 0.0 0.0084 16.0 0.0 1.8 2 1 0 2 2 2 1 Malarial early transcribed membrane protein (ETRAMP) DUF4534 PF15049.1 gi|20090204|ref|NP_616279.1| - 1.6 8.3 7.8 3.5 7.2 5.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4534) Pox_A14 PF05767.7 gi|20090204|ref|NP_616279.1| - 2.8 7.9 5.5 0.48 10.4 0.3 1.9 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF2196 PF09962.4 gi|20090205|ref|NP_616280.1| - 3.4e-30 103.6 6.3 4.1e-30 103.3 4.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Beta-lactamase PF00144.19 gi|20090206|ref|NP_616281.1| - 1.4e-65 221.5 0.0 2e-65 220.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF2975 PF11188.3 gi|20090206|ref|NP_616281.1| - 0.57 9.8 8.4 0.076 12.7 2.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) MFS_1 PF07690.11 gi|20090207|ref|NP_616282.1| - 2.3e-53 181.1 36.4 2.3e-53 181.1 25.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|20090207|ref|NP_616282.1| - 5.8e-09 34.8 32.2 2.1e-05 23.0 5.3 2.8 2 1 1 3 3 3 3 MFS/sugar transport protein Sugar_tr PF00083.19 gi|20090207|ref|NP_616282.1| - 0.00025 19.7 27.6 0.00055 18.6 11.5 2.8 1 1 1 2 2 2 2 Sugar (and other) transporter Methyltransf_11 PF08241.7 gi|20090208|ref|NP_616283.1| - 4.8e-23 81.4 0.0 8e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090208|ref|NP_616283.1| - 7.2e-21 74.3 0.0 9.3e-21 74.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090208|ref|NP_616283.1| - 2.4e-17 63.1 0.0 3.2e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090208|ref|NP_616283.1| - 3e-17 62.5 0.0 4.1e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|20090208|ref|NP_616283.1| - 3.9e-15 56.3 0.0 5.7e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090208|ref|NP_616283.1| - 7.3e-14 51.9 0.0 3.3e-13 49.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090208|ref|NP_616283.1| - 1.6e-12 47.5 0.0 2.6e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090208|ref|NP_616283.1| - 2.3e-12 47.2 0.0 3.5e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090208|ref|NP_616283.1| - 3.8e-11 42.6 0.0 5.9e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|20090208|ref|NP_616283.1| - 1.8e-06 27.2 0.0 2.1e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|20090208|ref|NP_616283.1| - 2.1e-06 27.0 0.0 3.8e-06 26.2 0.0 1.4 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|20090208|ref|NP_616283.1| - 4e-05 23.3 0.0 5.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|20090208|ref|NP_616283.1| - 5.1e-05 22.7 0.0 8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|20090208|ref|NP_616283.1| - 0.00019 20.6 0.0 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|20090208|ref|NP_616283.1| - 0.0009 18.9 0.0 0.039 13.5 0.0 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase FmrO PF07091.6 gi|20090208|ref|NP_616283.1| - 0.00099 18.1 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) TPMT PF05724.6 gi|20090208|ref|NP_616283.1| - 0.0011 18.5 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) N6_N4_Mtase PF01555.13 gi|20090208|ref|NP_616283.1| - 0.0022 17.5 0.0 0.19 11.2 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Methyltransf_4 PF02390.12 gi|20090208|ref|NP_616283.1| - 0.011 14.8 0.0 0.44 9.5 0.0 2.1 2 0 0 2 2 2 0 Putative methyltransferase RrnaAD PF00398.15 gi|20090208|ref|NP_616283.1| - 0.014 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|20090208|ref|NP_616283.1| - 0.025 14.1 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 N2227 PF07942.7 gi|20090208|ref|NP_616283.1| - 0.025 13.5 0.0 0.04 12.8 0.0 1.3 1 0 0 1 1 1 0 N2227-like protein AdoMet_MTase PF07757.8 gi|20090208|ref|NP_616283.1| - 0.066 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase NodS PF05401.6 gi|20090208|ref|NP_616283.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.14 gi|20090208|ref|NP_616283.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|20090208|ref|NP_616283.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Multi_Drug_Res PF00893.14 gi|20090209|ref|NP_616284.1| - 2.1e-29 101.8 10.2 2.8e-29 101.4 7.1 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|20090209|ref|NP_616284.1| - 0.00055 19.9 15.2 0.00071 19.6 10.5 1.2 1 1 0 1 1 1 1 EamA-like transporter family DUF3483 PF11982.3 gi|20090209|ref|NP_616284.1| - 0.078 12.2 2.0 0.07 12.4 0.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3483) EmrE PF13536.1 gi|20090209|ref|NP_616284.1| - 0.11 12.6 14.9 0.35 11.0 10.1 1.7 1 1 0 1 1 1 0 Multidrug resistance efflux transporter TPT PF03151.11 gi|20090209|ref|NP_616284.1| - 0.12 12.0 10.8 0.19 11.3 7.5 1.4 1 1 0 1 1 1 0 Triose-phosphate Transporter family Acyl_transf_3 PF01757.17 gi|20090209|ref|NP_616284.1| - 0.65 8.7 10.5 0.78 8.5 7.3 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF4293 PF14126.1 gi|20090209|ref|NP_616284.1| - 4.7 7.1 8.1 3.4 7.5 1.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4293) eIF-1a PF01176.14 gi|20090212|ref|NP_616287.1| - 1.4e-19 69.2 0.5 1.8e-19 68.8 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1174 PF06671.6 gi|20090213|ref|NP_616288.1| - 5.6 6.6 10.5 0.12 12.0 2.5 1.9 2 0 0 2 2 2 0 Repeat of unknown function (DUF1174) eIF-1a PF01176.14 gi|20090214|ref|NP_616289.1| - 4.5e-18 64.4 0.3 6.5e-18 63.9 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TPP_enzyme_N PF02776.13 gi|20090215|ref|NP_616290.1| - 6.9e-55 185.1 0.0 2.4e-53 180.1 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|20090215|ref|NP_616290.1| - 1.7e-36 125.1 0.0 5.2e-36 123.5 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|20090215|ref|NP_616290.1| - 2.9e-26 91.8 0.0 6.9e-26 90.6 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|20090215|ref|NP_616290.1| - 0.00066 19.2 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Phage_X PF05155.10 gi|20090215|ref|NP_616290.1| - 0.035 14.0 0.0 6.7 6.7 0.0 2.6 2 0 0 2 2 2 0 Phage X family Molybdopterin PF00384.17 gi|20090215|ref|NP_616290.1| - 0.056 12.1 0.0 1.9 7.1 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Aldedh PF00171.17 gi|20090216|ref|NP_616291.1| - 2.6e-130 434.8 0.0 2.9e-130 434.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family CtaG_Cox11 PF04442.9 gi|20090217|ref|NP_616292.1| - 0.15 11.8 2.1 0.2 11.4 1.5 1.4 1 1 0 1 1 1 0 Cytochrome c oxidase assembly protein CtaG/Cox11 Presenilin PF01080.12 gi|20090217|ref|NP_616292.1| - 1.4 7.6 3.5 1.6 7.4 2.4 1.1 1 0 0 1 1 1 0 Presenilin Asp-B-Hydro_N PF05279.6 gi|20090217|ref|NP_616292.1| - 4.6 7.0 14.8 6 6.6 10.2 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Cupredoxin_1 PF13473.1 gi|20090218|ref|NP_616293.1| - 1.7e-11 43.9 0.0 1.9e-11 43.7 0.0 1.3 1 1 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|20090218|ref|NP_616293.1| - 4.2e-11 42.9 0.1 0.00029 20.9 0.0 2.2 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Copper-bind PF00127.15 gi|20090219|ref|NP_616294.1| - 1.7e-10 41.0 4.2 3.8e-09 36.6 0.2 2.8 2 2 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|20090219|ref|NP_616294.1| - 4.7e-10 39.2 0.1 1.5e-09 37.6 0.0 1.9 1 1 0 2 2 2 1 Cupredoxin-like domain Methyltransf_18 PF12847.2 gi|20090221|ref|NP_616296.1| - 2e-14 54.1 0.0 3.4e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090221|ref|NP_616296.1| - 4.7e-10 39.2 0.0 8.3e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090221|ref|NP_616296.1| - 3.7e-09 36.5 0.0 6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090221|ref|NP_616296.1| - 1.8e-07 31.4 0.0 6.7e-07 29.6 0.0 2.0 3 0 0 3 3 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090221|ref|NP_616296.1| - 3.5e-07 30.6 0.0 6.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20090221|ref|NP_616296.1| - 4.5e-07 29.1 0.0 6.9e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|20090221|ref|NP_616296.1| - 2.7e-06 27.0 0.0 4.3e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|20090221|ref|NP_616296.1| - 5.1e-06 26.8 0.0 1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20090221|ref|NP_616296.1| - 5.2e-06 26.1 0.0 7.7e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|20090221|ref|NP_616296.1| - 1.4e-05 24.5 0.0 1.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|20090221|ref|NP_616296.1| - 2.8e-05 23.8 0.1 9.3e-05 22.0 0.1 1.8 1 1 0 1 1 1 1 Met-10+ like-protein DREV PF05219.7 gi|20090221|ref|NP_616296.1| - 3.4e-05 22.8 0.0 7.8e-05 21.6 0.0 1.5 1 1 1 2 2 2 1 DREV methyltransferase Cons_hypoth95 PF03602.10 gi|20090221|ref|NP_616296.1| - 4.2e-05 23.0 0.0 6.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.10 gi|20090221|ref|NP_616296.1| - 8.4e-05 21.7 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_26 PF13659.1 gi|20090221|ref|NP_616296.1| - 8.4e-05 22.5 0.0 0.00012 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|20090221|ref|NP_616296.1| - 0.00023 20.3 0.3 0.00039 19.6 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|20090221|ref|NP_616296.1| - 0.00053 19.1 0.0 0.00084 18.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|20090221|ref|NP_616296.1| - 0.0014 17.7 0.0 0.0022 17.1 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|20090221|ref|NP_616296.1| - 0.0043 16.2 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB tRNA_U5-meth_tr PF05958.6 gi|20090221|ref|NP_616296.1| - 0.014 14.1 0.0 0.03 13.0 0.0 1.5 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|20090221|ref|NP_616296.1| - 0.042 12.8 0.0 0.065 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.12 gi|20090221|ref|NP_616296.1| - 0.054 12.3 0.0 0.078 11.8 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin NAD_binding_10 PF13460.1 gi|20090221|ref|NP_616296.1| - 0.12 12.3 0.1 0.29 11.1 0.0 1.6 2 0 0 2 2 2 0 NADH(P)-binding NPHI_C PF08469.5 gi|20090221|ref|NP_616296.1| - 0.13 12.1 0.3 15 5.4 0.0 2.3 2 0 0 2 2 2 0 Nucleoside triphosphatase I C-terminal RimK PF08443.6 gi|20090222|ref|NP_616297.1| - 3.3e-45 153.9 0.0 4.8e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|20090222|ref|NP_616297.1| - 2.1e-18 66.0 0.0 7.8e-18 64.2 0.0 1.8 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|20090222|ref|NP_616297.1| - 3.9e-11 43.0 0.0 6.5e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|20090222|ref|NP_616297.1| - 8.2e-07 29.0 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20090222|ref|NP_616297.1| - 2e-05 23.4 0.0 0.0002 20.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Synapsin_C PF02750.9 gi|20090222|ref|NP_616297.1| - 0.00039 19.5 0.0 0.00055 19.1 0.0 1.1 1 0 0 1 1 1 1 Synapsin, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|20090222|ref|NP_616297.1| - 0.0012 18.2 0.0 0.0049 16.2 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|20090222|ref|NP_616297.1| - 0.0021 17.4 0.0 0.0044 16.3 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|20090222|ref|NP_616297.1| - 0.0033 16.5 0.1 0.015 14.3 0.0 2.0 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.1 gi|20090222|ref|NP_616297.1| - 0.0064 15.3 0.1 0.63 8.7 0.0 2.6 1 1 2 3 3 3 1 YheC/D like ATP-grasp CPSase_L_D2 PF02786.12 gi|20090222|ref|NP_616297.1| - 0.036 13.3 0.0 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TTL PF03133.10 gi|20090222|ref|NP_616297.1| - 0.16 10.8 0.0 1.3 7.8 0.0 2.0 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family TPR_1 PF00515.23 gi|20090223|ref|NP_616298.1| - 7.1e-93 300.7 34.5 1.2e-09 37.3 0.0 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090223|ref|NP_616298.1| - 3.9e-89 292.3 41.1 1.3e-17 63.2 0.2 6.4 2 2 4 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|20090223|ref|NP_616298.1| - 5.8e-76 244.4 37.1 2.3e-07 30.2 0.0 10.2 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090223|ref|NP_616298.1| - 3e-65 216.1 40.3 4.4e-12 45.7 0.8 6.7 1 1 8 9 9 9 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090223|ref|NP_616298.1| - 1.8e-58 189.9 23.6 4.6e-07 29.5 0.0 10.3 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090223|ref|NP_616298.1| - 2.7e-53 173.7 31.8 3.6e-06 26.3 0.2 10.2 8 2 2 10 10 10 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090223|ref|NP_616298.1| - 3.8e-52 173.9 20.5 3.8e-12 46.5 0.2 6.3 3 2 2 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090223|ref|NP_616298.1| - 3.3e-49 160.8 19.1 1.7e-05 25.0 0.0 10.1 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090223|ref|NP_616298.1| - 4e-42 142.4 44.5 6.7e-09 35.9 0.2 7.3 3 2 5 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090223|ref|NP_616298.1| - 1.4e-32 108.8 21.4 1.6e-05 24.3 0.0 10.2 9 1 1 10 10 10 8 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090223|ref|NP_616298.1| - 1.3e-24 86.1 16.0 1e-08 35.1 1.1 5.4 2 2 3 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|20090223|ref|NP_616298.1| - 1.5e-24 85.6 7.7 4.7e-05 23.1 0.1 6.7 1 1 7 8 8 8 7 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090223|ref|NP_616298.1| - 3.2e-24 83.6 19.9 0.0055 17.0 0.1 10.2 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090223|ref|NP_616298.1| - 3.2e-17 61.8 28.2 0.019 14.8 0.1 9.6 10 0 0 10 10 9 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20090223|ref|NP_616298.1| - 2.9e-15 56.3 14.7 0.0032 17.2 0.3 7.7 1 1 4 5 5 5 3 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|20090223|ref|NP_616298.1| - 4.1e-15 55.4 34.2 0.026 14.3 0.3 9.7 8 2 2 10 10 10 6 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|20090223|ref|NP_616298.1| - 1.2e-13 50.6 6.8 0.025 13.3 0.0 5.2 2 2 3 5 5 5 4 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|20090223|ref|NP_616298.1| - 1.3e-09 37.5 14.6 0.019 14.0 0.2 4.6 1 1 1 4 4 4 2 Tetratricopeptide repeat BTAD PF03704.12 gi|20090223|ref|NP_616298.1| - 1.8e-08 34.8 10.7 0.89 9.8 0.0 4.9 2 2 1 4 4 4 3 Bacterial transcriptional activator domain Coatomer_E PF04733.9 gi|20090223|ref|NP_616298.1| - 2.5e-08 33.4 10.7 3.1e-05 23.3 0.5 4.3 1 1 3 4 4 4 2 Coatomer epsilon subunit PPR PF01535.15 gi|20090223|ref|NP_616298.1| - 4.5e-08 32.5 13.8 1.1 9.3 0.0 8.4 9 0 0 9 9 9 2 PPR repeat TPR_20 PF14561.1 gi|20090223|ref|NP_616298.1| - 6.4e-08 32.6 11.7 1.3 9.1 0.0 5.8 2 2 2 5 5 5 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|20090223|ref|NP_616298.1| - 1.3e-07 31.2 21.9 0.39 10.5 0.1 9.5 9 1 1 10 10 9 1 Tetratricopeptide repeat FAT PF02259.18 gi|20090223|ref|NP_616298.1| - 2.7e-07 29.8 9.2 0.058 12.3 0.3 5.3 1 1 2 4 4 4 2 FAT domain TPR_5 PF12688.2 gi|20090223|ref|NP_616298.1| - 6.3e-06 26.2 9.5 0.31 11.0 0.9 5.9 2 2 3 5 5 5 1 Tetratrico peptide repeat TPR_4 PF07721.9 gi|20090223|ref|NP_616298.1| - 6.9e-06 26.0 0.2 1.2e+02 3.6 0.1 6.6 7 0 0 7 7 6 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|20090223|ref|NP_616298.1| - 7.1e-06 25.1 12.6 1.9 7.8 0.2 8.0 8 0 0 8 8 8 1 SHNi-TPR Rapsyn_N PF10579.4 gi|20090223|ref|NP_616298.1| - 2.1e-05 24.2 0.5 0.68 9.7 0.0 4.9 3 2 2 5 5 5 1 Rapsyn N-terminal myristoylation and linker region Fis1_TPR_C PF14853.1 gi|20090223|ref|NP_616298.1| - 3e-05 23.8 13.9 20 5.1 0.0 8.0 5 4 4 9 9 9 0 Fis1 C-terminal tetratricopeptide repeat ChAPs PF09295.5 gi|20090223|ref|NP_616298.1| - 0.01 14.6 1.5 0.16 10.6 0.0 2.4 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) Clathrin PF00637.15 gi|20090223|ref|NP_616298.1| - 0.014 14.9 10.9 1.4 8.4 0.3 5.0 1 1 2 4 4 4 0 Region in Clathrin and VPS Apc5 PF12862.2 gi|20090223|ref|NP_616298.1| - 0.022 14.5 12.9 1.8 8.4 0.2 6.4 4 3 3 7 7 7 0 Anaphase-promoting complex subunit 5 RPN7 PF10602.4 gi|20090223|ref|NP_616298.1| - 0.033 13.5 13.0 1.6 8.0 0.2 5.4 6 1 0 6 6 5 0 26S proteasome subunit RPN7 FliJ PF02050.11 gi|20090223|ref|NP_616298.1| - 0.047 13.7 3.3 8.7 6.4 0.0 4.2 3 1 0 4 4 4 0 Flagellar FliJ protein Acyl-CoA_ox_N PF14749.1 gi|20090223|ref|NP_616298.1| - 0.11 12.8 1.4 4.8 7.5 0.0 3.5 3 1 0 4 4 2 0 Acyl-coenzyme A oxidase N-terminal Surfac_D-trimer PF09006.6 gi|20090223|ref|NP_616298.1| - 0.11 12.2 0.5 28 4.5 0.0 4.3 5 0 0 5 5 4 0 Lung surfactant protein D coiled-coil trimerisation Glucosaminidase PF01832.15 gi|20090223|ref|NP_616298.1| - 0.11 12.6 5.8 1.4 9.0 0.1 3.4 2 1 2 4 4 4 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DUF627 PF04781.7 gi|20090223|ref|NP_616298.1| - 0.12 12.0 1.2 88 2.7 0.0 4.1 3 2 1 4 4 4 0 Protein of unknown function (DUF627) NRDE-2 PF08424.5 gi|20090223|ref|NP_616298.1| - 0.14 11.0 6.9 0.55 9.0 0.1 3.2 2 2 0 2 2 2 0 NRDE-2, necessary for RNA interference Aida_N PF08910.5 gi|20090223|ref|NP_616298.1| - 0.36 11.0 6.7 18 5.5 0.1 4.0 2 2 1 4 4 4 0 Aida N-terminus Lambda_Kil PF06301.6 gi|20090223|ref|NP_616298.1| - 0.8 9.1 22.9 1.9 7.9 0.0 7.9 10 0 0 10 10 9 0 Bacteriophage lambda Kil protein Nsp1_C PF05064.8 gi|20090223|ref|NP_616298.1| - 1.3 8.6 5.3 28 4.3 0.0 3.6 4 1 0 4 4 2 0 Nsp1-like C-terminal region Glyco_hydro_11 PF00457.12 gi|20090223|ref|NP_616298.1| - 1.4 8.1 4.4 7.4 5.8 0.0 3.8 3 2 2 5 5 5 0 Glycosyl hydrolases family 11 Sda PF08970.5 gi|20090223|ref|NP_616298.1| - 8 6.0 13.5 38 3.8 0.0 6.0 7 0 0 7 7 5 0 Sporulation inhibitor A HAD_2 PF13419.1 gi|20090224|ref|NP_616299.1| - 1.4e-29 103.5 0.1 2e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|20090224|ref|NP_616299.1| - 3.6e-15 56.9 0.0 1.2e-13 52.0 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20090224|ref|NP_616299.1| - 4e-09 36.0 0.0 1.2e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|20090224|ref|NP_616299.1| - 3.6e-05 24.0 0.1 4.8e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CheR PF01739.13 gi|20090224|ref|NP_616299.1| - 0.039 13.2 0.0 0.06 12.6 0.0 1.2 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain TPR_1 PF00515.23 gi|20090225|ref|NP_616300.1| - 2.4e-76 248.4 23.9 2.4e-11 42.7 0.1 8.1 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090225|ref|NP_616300.1| - 8.9e-62 204.6 17.1 8.1e-19 67.0 0.5 4.3 3 1 0 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|20090225|ref|NP_616300.1| - 2.7e-58 189.2 22.5 6.1e-09 35.1 0.2 8.1 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090225|ref|NP_616300.1| - 1.2e-45 149.8 26.2 1e-07 31.1 0.0 8.1 6 2 2 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090225|ref|NP_616300.1| - 1.6e-39 130.7 14.8 1e-05 25.3 0.0 9.1 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090225|ref|NP_616300.1| - 3.8e-39 132.4 8.2 1e-10 41.3 0.1 4.7 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090225|ref|NP_616300.1| - 1.2e-36 124.6 12.1 1.6e-09 38.1 0.1 5.0 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090225|ref|NP_616300.1| - 1e-30 103.4 12.9 0.00042 20.7 0.0 8.1 3 3 5 8 8 8 8 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20090225|ref|NP_616300.1| - 9.7e-27 92.6 4.9 6.4e-07 29.1 1.3 5.7 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090225|ref|NP_616300.1| - 4.4e-25 87.7 16.2 1.1e-06 28.8 0.3 6.0 2 2 2 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090225|ref|NP_616300.1| - 2.2e-22 77.9 15.1 0.034 14.6 0.2 8.1 8 0 0 8 8 8 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090225|ref|NP_616300.1| - 2.8e-16 59.4 10.0 1.6e-06 28.1 0.6 4.2 1 1 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|20090225|ref|NP_616300.1| - 1.3e-14 52.6 13.3 0.14 12.0 0.0 7.9 7 1 1 8 8 8 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20090225|ref|NP_616300.1| - 3e-13 49.8 5.6 0.00037 20.3 0.0 5.6 3 1 2 6 6 5 2 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|20090225|ref|NP_616300.1| - 1.6e-11 43.7 17.3 0.27 11.2 0.0 7.6 8 0 0 8 8 8 4 Tetratricopeptide repeat MIT PF04212.13 gi|20090225|ref|NP_616300.1| - 3.6e-10 39.5 16.0 0.31 10.9 0.4 8.2 6 2 3 9 9 9 2 MIT (microtubule interacting and transport) domain TPR_20 PF14561.1 gi|20090225|ref|NP_616300.1| - 4e-08 33.2 0.9 0.14 12.3 0.0 5.0 2 2 3 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|20090225|ref|NP_616300.1| - 2e-07 30.1 6.2 0.00062 18.6 2.3 4.0 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|20090225|ref|NP_616300.1| - 1.9e-06 27.6 12.2 0.22 11.4 0.1 5.8 6 2 2 8 8 6 2 Fis1 C-terminal tetratricopeptide repeat ChAPs PF09295.5 gi|20090225|ref|NP_616300.1| - 3.4e-06 26.1 0.8 0.0014 17.4 0.1 2.1 2 0 0 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) FAT PF02259.18 gi|20090225|ref|NP_616300.1| - 3.7e-06 26.1 1.6 0.11 11.4 1.1 4.1 1 1 0 1 1 1 1 FAT domain TPR_15 PF13429.1 gi|20090225|ref|NP_616300.1| - 2.7e-05 23.3 10.6 0.62 9.0 0.9 5.2 1 1 2 4 4 4 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|20090225|ref|NP_616300.1| - 3.1e-05 23.6 3.1 0.0063 16.1 0.0 4.1 2 2 1 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 DUF2550 PF10739.4 gi|20090225|ref|NP_616300.1| - 0.00031 20.7 0.0 0.00047 20.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2550) Coatomer_E PF04733.9 gi|20090225|ref|NP_616300.1| - 0.00034 19.9 1.1 0.76 8.9 0.0 3.1 2 1 2 4 4 4 2 Coatomer epsilon subunit DUF627 PF04781.7 gi|20090225|ref|NP_616300.1| - 0.00079 19.0 0.0 0.8 9.3 0.0 3.4 3 0 0 3 3 3 1 Protein of unknown function (DUF627) Lambda_Kil PF06301.6 gi|20090225|ref|NP_616300.1| - 0.0061 15.9 11.1 9.2 5.7 0.0 6.0 7 0 0 7 7 6 0 Bacteriophage lambda Kil protein SNAP PF14938.1 gi|20090225|ref|NP_616300.1| - 0.015 14.4 17.4 0.55 9.3 0.5 4.8 2 2 3 5 5 5 0 Soluble NSF attachment protein, SNAP BTAD PF03704.12 gi|20090225|ref|NP_616300.1| - 0.019 15.2 5.6 8.5 6.6 0.0 4.5 2 1 2 6 6 6 0 Bacterial transcriptional activator domain NOP5NT PF08156.8 gi|20090225|ref|NP_616300.1| - 0.02 15.0 1.0 5.4 7.2 0.1 4.4 5 2 0 5 5 3 0 NOP5NT (NUC127) domain DUF1910 PF08928.5 gi|20090225|ref|NP_616300.1| - 0.027 14.4 1.8 1 9.3 0.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF1910) UPF0122 PF04297.9 gi|20090225|ref|NP_616300.1| - 0.03 14.3 3.0 3.6 7.6 0.0 4.4 3 2 2 5 5 5 0 Putative helix-turn-helix protein, YlxM / p13 like TMCO5 PF14992.1 gi|20090225|ref|NP_616300.1| - 0.032 13.3 0.4 0.22 10.6 0.0 2.5 3 1 0 3 3 3 0 TMCO5 family Transcrip_act PF04949.8 gi|20090225|ref|NP_616300.1| - 0.058 13.0 2.8 18 4.9 0.1 4.1 4 0 0 4 4 4 0 Transcriptional activator NTase_sub_bind PF08780.6 gi|20090225|ref|NP_616300.1| - 0.075 12.8 1.1 1.8e+02 1.9 0.0 4.6 4 1 1 5 5 5 0 Nucleotidyltransferase substrate binding protein like TPR_3 PF07720.7 gi|20090225|ref|NP_616300.1| - 0.077 12.8 0.0 0.077 12.8 0.0 7.0 9 0 0 9 9 8 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|20090225|ref|NP_616300.1| - 0.095 12.0 8.8 0.2 11.0 0.8 4.0 2 2 1 3 3 3 0 26S proteasome subunit RPN7 HTH_OrfB_IS605 PF12323.3 gi|20090225|ref|NP_616300.1| - 0.21 10.9 2.7 1.2 8.4 0.1 3.3 4 0 0 4 4 3 0 Helix-turn-helix domain SHNi-TPR PF10516.4 gi|20090225|ref|NP_616300.1| - 0.52 9.5 18.6 0.63 9.3 0.1 5.3 6 0 0 6 6 5 0 SHNi-TPR PMBR PF09373.5 gi|20090225|ref|NP_616300.1| - 2.7 8.0 6.4 79 3.4 0.0 4.4 5 0 0 5 5 4 0 Pseudomurein-binding repeat Response_reg PF00072.19 gi|20090227|ref|NP_616302.1| - 1.3e-20 73.5 0.0 1.4e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MarR_2 PF12802.2 gi|20090228|ref|NP_616303.1| - 1.1e-05 24.9 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|20090228|ref|NP_616303.1| - 7.3e-05 22.2 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|20090228|ref|NP_616303.1| - 0.00035 19.9 0.0 0.00053 19.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|20090228|ref|NP_616303.1| - 0.0017 18.0 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20090228|ref|NP_616303.1| - 0.0038 16.8 0.0 0.0047 16.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|20090228|ref|NP_616303.1| - 0.013 15.1 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|20090228|ref|NP_616303.1| - 0.017 15.2 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|20090228|ref|NP_616303.1| - 0.027 14.1 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF1495 PF07381.6 gi|20090228|ref|NP_616303.1| - 0.039 13.6 0.0 1.1 8.9 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.1 gi|20090228|ref|NP_616303.1| - 0.06 13.6 0.0 0.072 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|20090228|ref|NP_616303.1| - 0.096 12.4 0.0 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain AMIN PF11741.3 gi|20090228|ref|NP_616303.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 AMIN domain RepL PF05732.6 gi|20090228|ref|NP_616303.1| - 0.11 11.6 0.1 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Pyr_redox_2 PF07992.9 gi|20090229|ref|NP_616304.1| - 3.8e-33 115.0 0.6 4.5e-33 114.8 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|20090229|ref|NP_616304.1| - 1.8e-17 64.1 1.5 4e-13 49.8 0.0 2.6 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20090229|ref|NP_616304.1| - 7.3e-15 55.1 8.8 4.2e-13 49.4 0.3 3.2 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|20090229|ref|NP_616304.1| - 2.1e-11 43.3 4.7 0.0001 21.3 0.2 3.7 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20090229|ref|NP_616304.1| - 6.6e-09 34.7 1.9 0.00029 19.4 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|20090229|ref|NP_616304.1| - 2e-07 30.4 2.1 8.9e-06 25.0 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|20090229|ref|NP_616304.1| - 1.8e-06 27.9 0.3 0.00014 21.8 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|20090229|ref|NP_616304.1| - 4.5e-06 25.7 4.0 2.3e-05 23.4 0.1 3.2 3 1 1 4 4 4 1 FAD binding domain GIDA PF01134.17 gi|20090229|ref|NP_616304.1| - 7.3e-06 25.0 7.2 0.0029 16.5 0.1 3.9 3 1 1 4 4 4 2 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|20090229|ref|NP_616304.1| - 8.4e-06 24.9 1.2 0.0021 17.0 0.0 2.7 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|20090229|ref|NP_616304.1| - 1.6e-05 24.1 0.4 0.011 14.8 0.1 2.7 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.14 gi|20090229|ref|NP_616304.1| - 2.9e-05 23.2 0.7 0.0027 16.8 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|20090229|ref|NP_616304.1| - 0.00086 19.5 0.9 0.054 13.7 0.2 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding FMO-like PF00743.14 gi|20090229|ref|NP_616304.1| - 0.008 14.4 0.1 0.026 12.7 0.0 1.8 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Trp_halogenase PF04820.9 gi|20090229|ref|NP_616304.1| - 0.032 12.8 3.2 1.9 6.9 0.0 2.8 3 0 0 3 3 3 0 Tryptophan halogenase AlaDh_PNT_C PF01262.16 gi|20090229|ref|NP_616304.1| - 0.07 12.7 0.4 6.9 6.2 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|20090229|ref|NP_616304.1| - 0.12 12.1 4.4 1.3 8.7 0.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|20090229|ref|NP_616304.1| - 0.21 10.4 5.0 2.7 6.8 0.6 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein Thioredoxin_3 PF13192.1 gi|20090230|ref|NP_616305.1| - 1e-10 41.2 0.0 1.2e-10 41.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|20090230|ref|NP_616305.1| - 5.7e-06 26.2 0.0 7.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.15 gi|20090230|ref|NP_616305.1| - 5.4e-05 22.8 0.0 5.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|20090230|ref|NP_616305.1| - 0.034 14.1 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like DSBA PF01323.15 gi|20090230|ref|NP_616305.1| - 0.045 13.3 0.0 0.049 13.1 0.0 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.1 gi|20090230|ref|NP_616305.1| - 0.09 12.9 0.1 4.8 7.3 0.1 2.0 1 1 1 2 2 2 0 Thioredoxin-like TP_methylase PF00590.15 gi|20090231|ref|NP_616306.1| - 9.1e-16 58.1 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.8 gi|20090232|ref|NP_616307.1| - 8.7e-30 102.2 0.9 1e-29 102.0 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF555 PF04475.7 gi|20090233|ref|NP_616308.1| - 9.8e-51 170.0 0.1 1.2e-50 169.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.7 gi|20090233|ref|NP_616308.1| - 0.028 14.4 0.2 1.3 9.1 0.0 2.3 2 0 0 2 2 2 0 Dodecin zinc_ribbon_2 PF13240.1 gi|20090233|ref|NP_616308.1| - 0.081 12.4 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain BON PF04972.12 gi|20090233|ref|NP_616308.1| - 0.14 11.9 0.8 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 BON domain PfkB PF00294.19 gi|20090234|ref|NP_616309.1| - 6e-54 183.2 0.0 7.7e-54 182.8 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HAP2-GCS1 PF10699.4 gi|20090234|ref|NP_616309.1| - 0.037 13.9 0.0 0.079 12.9 0.0 1.5 1 0 0 1 1 1 0 Male gamete fusion factor ATP_bind_4 PF01902.12 gi|20090235|ref|NP_616310.1| - 2.9e-74 249.1 0.3 3.3e-74 248.9 0.2 1.0 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|20090235|ref|NP_616310.1| - 0.074 12.5 0.0 0.19 11.1 0.0 1.8 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) AIRC PF00731.15 gi|20090237|ref|NP_616312.1| - 9.4e-43 145.0 0.9 1.1e-42 144.8 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase DXP_reductoisom PF02670.11 gi|20090237|ref|NP_616312.1| - 0.033 14.7 0.0 0.043 14.3 0.0 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase CM_2 PF01817.16 gi|20090238|ref|NP_616313.1| - 1.1e-16 60.6 6.0 1.3e-16 60.4 4.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II FTCD_C PF04961.7 gi|20090238|ref|NP_616313.1| - 0.015 14.7 0.1 0.016 14.6 0.1 1.0 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase Osmo_CC PF08946.5 gi|20090238|ref|NP_616313.1| - 0.029 14.3 1.1 0.062 13.3 0.8 1.6 1 0 0 1 1 1 0 Osmosensory transporter coiled coil GHMP_kinases_N PF00288.21 gi|229017562|ref|NP_616314.2| - 2.5e-09 37.0 1.6 2.5e-09 37.0 1.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|229017562|ref|NP_616314.2| - 6.8e-05 23.0 0.1 0.0002 21.4 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal FlpD PF02662.11 gi|229017562|ref|NP_616314.2| - 0.1 12.3 0.1 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit rve PF00665.21 gi|20090240|ref|NP_616315.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20090240|ref|NP_616315.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20090240|ref|NP_616315.1| - 6.8e-05 22.9 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20090240|ref|NP_616315.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20090240|ref|NP_616315.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20090240|ref|NP_616315.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal PhoU PF01895.14 gi|20090241|ref|NP_616316.1| - 2.3e-23 82.4 7.6 2.3e-13 50.3 0.3 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|20090241|ref|NP_616316.1| - 1.1e-09 37.8 0.1 2e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Catalase-rel PF06628.7 gi|20090241|ref|NP_616316.1| - 0.12 12.2 0.4 10 6.0 0.0 2.8 2 1 1 3 3 3 0 Catalase-related immune-responsive MMR_HSR1 PF01926.18 gi|20090242|ref|NP_616317.1| - 5.1e-16 58.6 0.1 7.8e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|20090242|ref|NP_616317.1| - 9.1e-15 54.5 0.8 2.7e-07 30.1 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|20090242|ref|NP_616317.1| - 3.6e-06 26.3 0.0 0.011 14.9 0.0 2.5 2 0 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|20090242|ref|NP_616317.1| - 8.7e-05 22.9 0.0 0.00035 21.0 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein Septin PF00735.13 gi|20090242|ref|NP_616317.1| - 0.00012 21.1 0.0 0.00017 20.7 0.0 1.2 1 0 0 1 1 1 1 Septin DUF258 PF03193.11 gi|20090242|ref|NP_616317.1| - 0.00017 20.8 0.1 0.00026 20.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|20090242|ref|NP_616317.1| - 0.00085 18.5 0.0 0.063 12.4 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_17 PF13207.1 gi|20090242|ref|NP_616317.1| - 0.00099 19.9 0.0 0.0017 19.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20090242|ref|NP_616317.1| - 0.0033 17.7 0.0 0.0054 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20090242|ref|NP_616317.1| - 0.0038 17.3 0.0 0.008 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|20090242|ref|NP_616317.1| - 0.0043 16.3 0.2 0.023 13.9 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B NB-ARC PF00931.17 gi|20090242|ref|NP_616317.1| - 0.0077 15.1 0.0 0.0077 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.22 gi|20090242|ref|NP_616317.1| - 0.0093 16.2 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter PPV_E1_C PF00519.12 gi|20090242|ref|NP_616317.1| - 0.02 13.4 0.1 0.03 12.9 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA PF00004.24 gi|20090242|ref|NP_616317.1| - 0.023 14.9 0.0 0.057 13.6 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|20090242|ref|NP_616317.1| - 0.028 13.8 0.2 0.42 10.0 0.2 2.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|20090242|ref|NP_616317.1| - 0.032 14.2 0.0 0.044 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|20090242|ref|NP_616317.1| - 0.043 13.2 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|20090242|ref|NP_616317.1| - 0.044 13.4 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|20090242|ref|NP_616317.1| - 0.065 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|20090242|ref|NP_616317.1| - 0.073 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|20090242|ref|NP_616317.1| - 0.077 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_35 PF14516.1 gi|20090242|ref|NP_616317.1| - 0.094 11.3 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|20090242|ref|NP_616317.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|20090242|ref|NP_616317.1| - 0.14 10.9 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2073 PF09846.4 gi|20090243|ref|NP_616318.1| - 3e-47 158.5 0.8 3.5e-47 158.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) GatB_Yqey PF02637.13 gi|20090243|ref|NP_616318.1| - 0.0033 17.1 1.0 0.004 16.8 0.7 1.2 1 0 0 1 1 1 1 GatB domain DUF421 PF04239.7 gi|20090243|ref|NP_616318.1| - 0.1 12.1 0.3 0.14 11.7 0.2 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF421) SIS PF01380.17 gi|20090245|ref|NP_616320.1| - 1.1e-16 60.6 0.0 1.6e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|20090245|ref|NP_616320.1| - 5.6e-08 32.5 3.0 0.0043 16.7 0.1 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.14 gi|20090245|ref|NP_616320.1| - 0.055 12.5 0.7 0.076 12.0 0.5 1.2 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Aminotran_1_2 PF00155.16 gi|20090246|ref|NP_616321.1| - 2.1e-67 227.6 0.0 2.6e-67 227.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|20090246|ref|NP_616321.1| - 1.6e-12 47.1 0.5 2.9e-12 46.3 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|20090246|ref|NP_616321.1| - 5.9e-11 41.7 0.0 1.1e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|20090246|ref|NP_616321.1| - 8.3e-10 37.4 0.2 1.5e-09 36.6 0.1 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|20090246|ref|NP_616321.1| - 1.6e-06 27.4 0.0 3.1e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase AP_endonuc_2 PF01261.19 gi|20090246|ref|NP_616321.1| - 0.038 13.2 0.0 0.2 10.8 0.0 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DNA_processg_A PF02481.10 gi|20090246|ref|NP_616321.1| - 0.058 12.2 1.2 1.9 7.3 0.1 2.4 2 0 0 2 2 2 0 DNA recombination-mediator protein A DUF1670 PF07900.6 gi|20090247|ref|NP_616322.1| - 2.6e-49 167.4 3.0 2.9e-49 167.2 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20090247|ref|NP_616322.1| - 3.6e-06 26.4 0.0 0.063 12.9 0.0 3.1 2 1 0 3 3 3 1 Homeodomain-like domain HTH_29 PF13551.1 gi|20090247|ref|NP_616322.1| - 0.0008 19.5 0.1 0.42 10.7 0.0 2.8 2 1 1 3 3 3 1 Winged helix-turn helix HTH_17 PF12728.2 gi|20090247|ref|NP_616322.1| - 0.0013 18.9 0.2 0.56 10.4 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20090247|ref|NP_616322.1| - 0.0014 17.9 0.6 0.83 9.1 0.0 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|20090247|ref|NP_616322.1| - 0.0018 17.8 0.3 0.78 9.3 0.1 3.1 2 1 1 3 3 3 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20090247|ref|NP_616322.1| - 0.0019 17.7 0.3 0.016 14.7 0.3 2.1 1 1 1 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_5 PF01022.15 gi|20090247|ref|NP_616322.1| - 0.0022 17.6 0.1 0.038 13.6 0.0 2.5 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|20090247|ref|NP_616322.1| - 0.0027 17.0 0.2 10 5.6 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|20090247|ref|NP_616322.1| - 0.01 15.5 0.2 1.2 9.0 0.0 3.0 1 1 2 3 3 3 0 Crp-like helix-turn-helix domain KorB PF08535.5 gi|20090247|ref|NP_616322.1| - 0.026 14.6 0.0 0.082 13.0 0.0 1.8 2 1 0 2 2 2 0 KorB domain HTH_28 PF13518.1 gi|20090247|ref|NP_616322.1| - 0.037 14.0 0.2 8 6.5 0.0 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain DUF3231 PF11553.3 gi|20090247|ref|NP_616322.1| - 0.042 13.3 0.3 1.5 8.2 0.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3231) HTH_10 PF04967.7 gi|20090247|ref|NP_616322.1| - 0.053 13.1 0.3 0.27 10.8 0.0 2.2 3 0 0 3 3 3 0 HTH DNA binding domain GerE PF00196.14 gi|20090247|ref|NP_616322.1| - 0.054 12.8 0.2 17 4.8 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|20090247|ref|NP_616322.1| - 0.056 13.1 0.4 4 7.1 0.1 2.8 2 1 1 3 3 3 0 HTH domain Fe_dep_repress PF01325.14 gi|20090247|ref|NP_616322.1| - 0.067 13.1 1.0 1.2 9.1 0.2 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sec20 PF03908.8 gi|20090247|ref|NP_616322.1| - 0.1 12.3 0.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 Sec20 Phage_terminase PF10668.4 gi|20090247|ref|NP_616322.1| - 0.11 12.2 0.1 0.47 10.2 0.1 2.0 2 1 0 2 2 2 0 Phage terminase small subunit HHH_8 PF14716.1 gi|20090247|ref|NP_616322.1| - 0.12 12.6 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF4535 PF15054.1 gi|20090247|ref|NP_616322.1| - 0.13 11.6 0.4 1.5 8.2 0.0 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4535) DUF1670 PF07900.6 gi|20090248|ref|NP_616323.1| - 5.2e-36 123.9 0.2 6.5e-36 123.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) DUF1670 PF07900.6 gi|20090249|ref|NP_616324.1| - 1e-85 286.4 0.3 1.2e-85 286.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.1 gi|20090249|ref|NP_616324.1| - 0.007 16.4 0.0 0.24 11.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20090249|ref|NP_616324.1| - 0.009 16.1 0.1 1.6 8.8 0.0 2.9 1 1 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|20090249|ref|NP_616324.1| - 0.012 15.2 0.5 0.056 13.0 0.0 2.3 3 0 0 3 3 3 0 HTH domain HTH_24 PF13412.1 gi|20090249|ref|NP_616324.1| - 0.012 14.9 0.2 0.075 12.4 0.1 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|20090249|ref|NP_616324.1| - 0.043 13.4 0.0 21 4.9 0.0 3.2 2 1 1 3 3 3 0 Homeodomain-like domain HTH_5 PF01022.15 gi|20090249|ref|NP_616324.1| - 0.062 12.9 0.1 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|20090249|ref|NP_616324.1| - 0.089 12.8 0.5 3.3 7.7 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20090249|ref|NP_616324.1| - 0.16 11.5 0.9 3.1 7.4 0.0 3.2 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) Phage_int_SAM_1 PF02899.12 gi|20090249|ref|NP_616324.1| - 0.2 11.8 1.8 1.6 8.9 0.1 2.6 2 1 1 3 3 3 0 Phage integrase, N-terminal SAM-like domain DsbD PF02683.10 gi|20090250|ref|NP_616325.1| - 2.6e-18 66.4 18.1 3.1e-18 66.1 12.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2910 PF11139.3 gi|20090250|ref|NP_616325.1| - 0.00036 19.7 11.8 0.0011 18.2 8.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2910) Connexin_CCC PF10582.4 gi|20090250|ref|NP_616325.1| - 0.0032 17.2 0.3 0.058 13.2 0.0 2.8 2 0 0 2 2 2 1 Gap junction channel protein cysteine-rich domain NOG1 PF06858.9 gi|20090251|ref|NP_616326.1| - 1.9e-23 82.0 0.1 3.3e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|20090251|ref|NP_616326.1| - 8.7e-18 64.3 0.0 2e-17 63.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|20090251|ref|NP_616326.1| - 1.9e-09 37.0 0.0 3.6e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|20090251|ref|NP_616326.1| - 3.1e-08 34.1 0.0 5.7e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|20090251|ref|NP_616326.1| - 0.00019 20.7 0.0 0.0035 16.6 0.0 2.6 1 1 0 1 1 1 1 ADP-ribosylation factor family GTP_EFTU PF00009.22 gi|20090251|ref|NP_616326.1| - 0.0027 17.1 0.0 0.069 12.5 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|20090251|ref|NP_616326.1| - 0.012 14.8 0.0 0.074 12.2 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|20090251|ref|NP_616326.1| - 0.016 14.3 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 AIG1 family ArgK PF03308.11 gi|20090251|ref|NP_616326.1| - 0.021 13.6 0.1 0.66 8.7 0.0 2.6 2 1 1 3 3 3 0 ArgK protein PPV_E1_C PF00519.12 gi|20090251|ref|NP_616326.1| - 0.2 10.2 0.0 0.3 9.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase HrcA_DNA-bdg PF03444.10 gi|20090252|ref|NP_616327.1| - 2.3e-38 129.4 0.4 6.2e-38 128.0 0.2 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|20090252|ref|NP_616327.1| - 2.5e-26 91.1 0.6 6.2e-12 45.1 0.2 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|20090252|ref|NP_616327.1| - 1.9e-08 34.3 0.1 6.3e-08 32.6 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|20090252|ref|NP_616327.1| - 2.9e-07 30.0 0.1 8.6e-07 28.5 0.1 1.9 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|20090252|ref|NP_616327.1| - 0.0025 17.4 0.0 0.01 15.5 0.0 2.0 2 0 0 2 2 2 1 MarR family Ribosomal_L9_C PF03948.9 gi|20090252|ref|NP_616327.1| - 0.02 14.9 0.1 0.051 13.6 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain HTH_5 PF01022.15 gi|20090252|ref|NP_616327.1| - 0.043 13.4 0.0 0.13 11.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|20090252|ref|NP_616327.1| - 0.062 12.7 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 TrmB PF01978.14 gi|20090252|ref|NP_616327.1| - 0.08 12.6 0.0 0.26 11.0 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|20090252|ref|NP_616327.1| - 0.099 12.0 0.5 0.38 10.1 0.2 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|20090252|ref|NP_616327.1| - 0.1 12.9 0.0 0.33 11.2 0.0 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain Vps4_C PF09336.5 gi|20090252|ref|NP_616327.1| - 0.15 11.9 0.0 0.43 10.5 0.0 1.8 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain PRA-PH PF01503.12 gi|20090253|ref|NP_616328.1| - 1.2e-09 38.3 0.1 1.2e-09 38.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|20090253|ref|NP_616328.1| - 0.00049 19.9 0.9 0.00067 19.5 0.6 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain CLTH PF10607.4 gi|20090253|ref|NP_616328.1| - 0.05 13.3 0.2 0.071 12.7 0.1 1.3 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain FCD PF07729.7 gi|20090253|ref|NP_616328.1| - 0.056 13.7 0.1 0.083 13.2 0.1 1.4 1 1 0 1 1 1 0 FCD domain Aconitase PF00330.15 gi|20090254|ref|NP_616329.1| - 2.3e-79 267.0 0.0 6.5e-56 189.7 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) CxxCxxCC PF03692.10 gi|20090255|ref|NP_616330.1| - 9.7e-13 48.4 6.8 3.8e-11 43.2 3.1 3.0 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain NikR_C PF08753.6 gi|20090256|ref|NP_616331.1| - 1.8e-33 114.2 2.7 2.5e-33 113.8 1.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|20090256|ref|NP_616331.1| - 5.7e-07 29.1 0.1 1.7e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family ACT PF01842.20 gi|20090257|ref|NP_616332.1| - 8.8e-06 25.0 0.1 2.5e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 ACT domain DUF2117 PF09890.4 gi|20090258|ref|NP_616333.1| - 9.5e-81 270.0 0.1 1.3e-80 269.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.16 gi|20090258|ref|NP_616333.1| - 0.037 12.7 0.2 0.085 11.6 0.0 1.6 1 1 1 2 2 2 0 ATP-NAD kinase CorA PF01544.13 gi|20090259|ref|NP_616334.1| - 0.16 11.0 0.3 0.19 10.7 0.2 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2193 PF09959.4 gi|20090261|ref|NP_616336.1| - 1.5e-279 927.2 2.0 1.7e-279 927.0 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) Amidase PF01425.16 gi|20090261|ref|NP_616336.1| - 0.049 12.4 0.0 0.078 11.8 0.0 1.3 1 0 0 1 1 1 0 Amidase YcbB PF08664.5 gi|20090261|ref|NP_616336.1| - 0.059 13.1 0.1 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 YcbB domain NUT_N PF12881.2 gi|20090262|ref|NP_616337.1| - 0.12 11.4 0.4 0.16 11.1 0.3 1.1 1 0 0 1 1 1 0 NUT protein N terminus NT5C PF06941.7 gi|20090263|ref|NP_616338.1| - 6.2e-09 35.6 0.0 2.8e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF4405 PF14358.1 gi|20090264|ref|NP_616339.1| - 0.033 14.3 0.7 0.053 13.6 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) PsbI PF02532.9 gi|20090264|ref|NP_616339.1| - 0.034 13.7 2.8 0.034 13.7 1.9 2.0 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) SNARE_assoc PF09335.6 gi|20090265|ref|NP_616340.1| - 7.9e-17 61.6 4.0 2.9e-16 59.7 1.4 2.0 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF3487 PF11990.3 gi|20090265|ref|NP_616340.1| - 0.18 11.1 1.5 0.26 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) DUF576 PF04507.7 gi|20090266|ref|NP_616341.1| - 0.0065 15.4 0.0 0.0085 15.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF576 Chordopox_A13L PF05961.6 gi|20090266|ref|NP_616341.1| - 0.089 12.7 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 Chordopoxvirus A13L protein DUF883 PF05957.8 gi|20090267|ref|NP_616342.1| - 0.00011 22.5 0.9 0.049 14.0 0.1 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF883) Syntaxin_2 PF14523.1 gi|20090267|ref|NP_616342.1| - 0.0063 16.5 1.5 0.1 12.6 0.4 2.2 1 1 1 2 2 2 1 Syntaxin-like protein FlxA PF14282.1 gi|20090267|ref|NP_616342.1| - 0.02 14.8 1.3 0.28 11.1 0.1 2.1 1 1 1 2 2 2 0 FlxA-like protein Laminin_I PF06008.9 gi|20090267|ref|NP_616342.1| - 0.029 13.7 0.8 0.054 12.8 0.5 1.5 1 1 0 1 1 1 0 Laminin Domain I Rox3 PF08633.5 gi|20090267|ref|NP_616342.1| - 0.041 14.1 2.3 0.041 14.1 1.1 1.5 1 1 0 1 1 1 0 Rox3 mediator complex subunit DUF552 PF04472.7 gi|20090267|ref|NP_616342.1| - 0.055 13.3 0.6 2 8.3 0.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF552) V-SNARE PF05008.10 gi|20090267|ref|NP_616342.1| - 0.064 13.4 1.2 2.4 8.3 0.1 2.5 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF1664 PF07889.7 gi|20090267|ref|NP_616342.1| - 0.075 12.8 4.8 0.17 11.7 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) VBS PF08913.5 gi|20090267|ref|NP_616342.1| - 0.075 13.2 0.3 0.71 10.1 0.0 2.0 1 1 1 2 2 2 0 Vinculin Binding Site MCPsignal PF00015.16 gi|20090267|ref|NP_616342.1| - 0.097 12.2 1.8 0.14 11.7 1.2 1.3 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin PF00804.20 gi|20090267|ref|NP_616342.1| - 0.19 11.8 5.0 2.3 8.4 3.2 2.3 1 1 0 1 1 1 0 Syntaxin Hormone_1 PF00103.15 gi|20090267|ref|NP_616342.1| - 0.24 10.7 0.9 0.88 8.8 0.1 2.0 1 1 1 2 2 2 0 Somatotropin hormone family LMBR1 PF04791.11 gi|20090267|ref|NP_616342.1| - 0.28 9.7 1.5 0.31 9.5 1.1 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Colicin PF01024.14 gi|20090267|ref|NP_616342.1| - 0.94 9.0 7.3 1.1 8.8 0.8 2.1 1 1 1 2 2 2 0 Colicin pore forming domain ISG65-75 PF11727.3 gi|20090267|ref|NP_616342.1| - 2.4 7.1 8.2 8.2 5.3 0.5 1.8 1 1 1 2 2 2 0 Invariant surface glycoprotein Seryl_tRNA_N PF02403.17 gi|20090267|ref|NP_616342.1| - 3.2 7.8 7.9 2.2 8.3 2.1 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF373 PF04123.8 gi|20090268|ref|NP_616343.1| - 2e-111 372.3 10.5 2.3e-111 372.1 7.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PNP_UDP_1 PF01048.15 gi|20090269|ref|NP_616344.1| - 3.8e-46 156.9 0.1 4.3e-46 156.7 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DEAD PF00270.24 gi|20090271|ref|NP_616346.1| - 2.9e-27 95.2 0.0 1.2e-26 93.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|20090271|ref|NP_616346.1| - 8.8e-14 51.1 0.0 2e-13 50.0 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|20090271|ref|NP_616346.1| - 3.6e-06 26.9 0.0 8e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|20090271|ref|NP_616346.1| - 0.014 14.1 0.0 0.022 13.5 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF3467 PF11950.3 gi|20090272|ref|NP_616347.1| - 1e-15 57.4 0.0 1.5e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) PCP_red PF08369.5 gi|20090272|ref|NP_616347.1| - 0.017 14.9 0.0 0.047 13.5 0.0 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit LSM PF01423.17 gi|20090273|ref|NP_616348.1| - 2e-18 65.6 2.2 2.3e-18 65.4 1.5 1.0 1 0 0 1 1 1 1 LSM domain PhoH PF02562.11 gi|20090273|ref|NP_616348.1| - 0.021 14.0 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 PhoH-like protein B-block_TFIIIC PF04182.7 gi|20090274|ref|NP_616349.1| - 1.6e-05 24.6 0.2 2.3e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|20090274|ref|NP_616349.1| - 0.0088 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20090274|ref|NP_616349.1| - 0.0092 15.6 0.1 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|20090274|ref|NP_616349.1| - 0.023 14.4 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|20090274|ref|NP_616349.1| - 0.026 13.9 0.1 0.051 12.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|20090274|ref|NP_616349.1| - 0.095 13.0 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.22 gi|20090278|ref|NP_616353.1| - 1.1e-57 194.1 0.8 9.7e-30 103.6 0.0 2.6 3 0 0 3 3 2 2 ABC transporter AAA_21 PF13304.1 gi|20090278|ref|NP_616353.1| - 6.8e-26 91.8 0.5 1.8e-09 37.9 0.0 4.4 2 2 2 4 4 4 3 AAA domain SMC_N PF02463.14 gi|20090278|ref|NP_616353.1| - 1e-16 60.8 3.4 6.6e-08 32.0 0.2 3.1 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|20090278|ref|NP_616353.1| - 2.8e-09 36.6 2.5 0.00029 20.3 0.6 3.5 3 1 0 3 3 3 2 AAA domain SbcCD_C PF13558.1 gi|20090278|ref|NP_616353.1| - 9.7e-09 35.0 2.3 0.0026 17.6 0.0 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|20090278|ref|NP_616353.1| - 1.4e-08 35.3 5.1 0.00035 20.9 0.3 2.8 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|20090278|ref|NP_616353.1| - 5.4e-08 32.2 0.3 0.0063 16.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20090278|ref|NP_616353.1| - 1.4e-07 31.7 5.1 0.0057 16.6 0.8 3.1 2 2 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|20090278|ref|NP_616353.1| - 6.5e-07 28.9 2.1 0.55 9.6 0.0 4.1 4 0 0 4 4 4 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|20090278|ref|NP_616353.1| - 3.2e-06 27.3 11.3 0.025 14.7 0.6 4.5 2 2 1 3 3 3 2 AAA domain KaiC PF06745.8 gi|20090278|ref|NP_616353.1| - 2e-05 23.8 3.0 0.14 11.2 0.0 3.9 4 0 0 4 4 4 2 KaiC UPF0079 PF02367.12 gi|20090278|ref|NP_616353.1| - 4.2e-05 23.1 0.7 0.22 11.1 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|20090278|ref|NP_616353.1| - 6.1e-05 21.7 0.9 0.79 8.1 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|20090278|ref|NP_616353.1| - 0.0001 23.1 1.4 0.055 14.2 0.1 3.2 3 2 0 3 3 2 1 AAA domain Zot PF05707.7 gi|20090278|ref|NP_616353.1| - 0.00012 21.5 1.2 0.067 12.6 0.0 3.8 4 0 0 4 4 4 1 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|20090278|ref|NP_616353.1| - 0.00018 21.0 2.2 0.22 10.9 0.0 3.7 4 0 0 4 4 4 1 AAA-like domain NACHT PF05729.7 gi|20090278|ref|NP_616353.1| - 0.0002 21.0 0.1 0.011 15.4 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|20090278|ref|NP_616353.1| - 0.00022 20.8 3.8 0.35 10.4 0.2 3.8 3 1 0 3 3 3 1 AAA domain AAA PF00004.24 gi|20090278|ref|NP_616353.1| - 0.00023 21.3 4.0 0.56 10.4 0.0 4.2 4 0 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|20090278|ref|NP_616353.1| - 0.00033 20.3 0.1 1.3 8.7 0.0 2.8 3 0 0 3 3 2 2 Part of AAA domain NTPase_1 PF03266.10 gi|20090278|ref|NP_616353.1| - 0.00039 20.1 8.5 0.22 11.2 0.1 3.8 4 0 0 4 4 4 2 NTPase RNA_helicase PF00910.17 gi|20090278|ref|NP_616353.1| - 0.00085 19.4 0.1 1.5 9.0 0.0 3.0 2 1 0 2 2 2 1 RNA helicase AAA_14 PF13173.1 gi|20090278|ref|NP_616353.1| - 0.001 18.9 0.4 9 6.2 0.0 3.8 4 0 0 4 4 3 0 AAA domain MobB PF03205.9 gi|20090278|ref|NP_616353.1| - 0.0011 18.7 0.8 0.58 9.8 0.1 3.2 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|20090278|ref|NP_616353.1| - 0.0011 18.8 3.8 1.4 8.8 0.2 3.6 2 2 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|20090278|ref|NP_616353.1| - 0.0018 17.5 0.1 0.68 9.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|20090278|ref|NP_616353.1| - 0.002 17.2 1.0 0.18 10.8 0.0 3.4 2 1 2 4 4 4 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|20090278|ref|NP_616353.1| - 0.0022 16.6 9.6 0.76 8.2 0.3 4.3 4 1 0 4 4 4 2 Predicted ATPase of the ABC class Miro PF08477.8 gi|20090278|ref|NP_616353.1| - 0.0023 18.4 0.1 0.12 12.9 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein Mg_chelatase PF01078.16 gi|20090278|ref|NP_616353.1| - 0.0039 16.3 0.4 1.3 8.1 0.0 3.0 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|20090278|ref|NP_616353.1| - 0.0043 16.0 0.4 0.6 8.9 0.1 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein PRK PF00485.13 gi|20090278|ref|NP_616353.1| - 0.0043 16.6 0.7 1.4 8.4 0.0 2.9 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|20090278|ref|NP_616353.1| - 0.0043 17.0 0.8 0.22 11.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|20090278|ref|NP_616353.1| - 0.0043 16.7 6.1 0.16 11.6 0.1 3.8 1 1 2 3 3 3 1 Archaeal ATPase AAA_18 PF13238.1 gi|20090278|ref|NP_616353.1| - 0.012 15.8 7.3 1.2 9.3 0.2 3.8 2 2 1 3 3 3 0 AAA domain PduV-EutP PF10662.4 gi|20090278|ref|NP_616353.1| - 0.016 14.7 0.7 2.6 7.5 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FtsK_SpoIIIE PF01580.13 gi|20090278|ref|NP_616353.1| - 0.022 14.2 0.1 2.8 7.3 0.0 2.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|20090278|ref|NP_616353.1| - 0.023 14.4 0.1 0.67 9.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 APS_kinase PF01583.15 gi|20090278|ref|NP_616353.1| - 0.031 13.9 1.9 0.23 11.1 0.1 2.8 3 0 0 3 3 2 0 Adenylylsulphate kinase HAD PF12710.2 gi|20090278|ref|NP_616353.1| - 0.039 14.1 0.1 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase AAA_5 PF07728.9 gi|20090278|ref|NP_616353.1| - 0.04 13.6 1.6 0.16 11.6 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|20090278|ref|NP_616353.1| - 0.042 13.0 4.4 3.2 6.9 0.1 3.6 4 0 0 4 4 4 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|20090278|ref|NP_616353.1| - 0.069 13.1 0.0 0.29 11.1 0.0 2.0 1 0 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.5 gi|20090278|ref|NP_616353.1| - 0.077 12.1 0.7 12 5.0 0.0 2.7 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Tub PF01167.13 gi|20090278|ref|NP_616353.1| - 0.11 11.5 0.1 0.21 10.5 0.1 1.5 1 0 0 1 1 1 0 Tub family Zeta_toxin PF06414.7 gi|20090278|ref|NP_616353.1| - 0.13 11.3 1.0 6.4 5.8 0.1 2.7 3 0 0 3 3 3 0 Zeta toxin ATP_bind_1 PF03029.12 gi|20090278|ref|NP_616353.1| - 0.14 11.7 2.3 4.8 6.6 0.0 3.2 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein DEAD PF00270.24 gi|20090278|ref|NP_616353.1| - 0.14 11.6 3.5 50 3.3 0.0 3.9 3 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|20090278|ref|NP_616353.1| - 0.28 10.7 3.4 0.6 9.6 0.1 2.8 3 0 0 3 3 3 0 AAA domain CbiQ PF02361.11 gi|20090279|ref|NP_616354.1| - 1.6e-31 109.6 10.9 2e-31 109.2 7.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein SdpI PF13630.1 gi|20090279|ref|NP_616354.1| - 2.2 8.0 0.0 2.2 8.0 0.0 3.6 4 0 0 4 4 4 0 SdpI/YhfL protein family CARDB PF07705.6 gi|20090280|ref|NP_616355.1| - 1.2e-30 105.5 12.6 8.1e-28 96.4 0.5 3.9 3 1 0 3 3 3 3 CARDB DUF2769 PF10967.3 gi|20090281|ref|NP_616356.1| - 2.9e-15 56.3 13.7 2.9e-15 56.3 9.5 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) WAC_Acf1_DNA_bd PF10537.4 gi|20090281|ref|NP_616356.1| - 0.08 13.1 0.1 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 ATP-utilising chromatin assembly and remodelling N-terminal AMP-binding PF00501.23 gi|20090282|ref|NP_616357.1| - 8e-105 350.6 0.0 9.5e-105 350.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|20090282|ref|NP_616357.1| - 1.9e-14 54.3 0.1 4e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT PF03061.17 gi|20090283|ref|NP_616358.1| - 1.7e-09 37.6 0.0 2.7e-09 36.9 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|20090283|ref|NP_616358.1| - 6.2e-09 36.3 0.0 8.1e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|20090283|ref|NP_616358.1| - 0.0018 17.3 0.0 0.1 11.5 0.0 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase LSPR PF06049.7 gi|20090283|ref|NP_616358.1| - 0.27 10.7 2.9 16 5.4 0.0 3.1 2 0 0 2 2 2 0 Coagulation Factor V LSPD Repeat Cupin_2 PF07883.6 gi|20090284|ref|NP_616359.1| - 9e-16 57.1 0.5 1.5e-15 56.4 0.4 1.2 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.17 gi|20090284|ref|NP_616359.1| - 5.9e-11 42.0 0.1 8.3e-11 41.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|20090284|ref|NP_616359.1| - 1.6e-10 41.0 0.3 2.5e-10 40.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|20090284|ref|NP_616359.1| - 1e-09 38.2 0.0 1.5e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|20090284|ref|NP_616359.1| - 0.0006 19.9 0.0 0.00092 19.3 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain AraC_binding PF02311.14 gi|20090284|ref|NP_616359.1| - 0.0011 18.6 0.1 0.002 17.8 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_25 PF13413.1 gi|20090284|ref|NP_616359.1| - 0.0045 16.6 0.7 0.0081 15.7 0.5 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.7 gi|20090284|ref|NP_616359.1| - 0.007 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DnaB_bind PF10410.4 gi|20090284|ref|NP_616359.1| - 0.071 13.1 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase DDE_Tnp_IS66 PF03050.9 gi|20090285|ref|NP_616360.1| - 2.6e-73 246.5 0.0 3.2e-73 246.2 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|20090285|ref|NP_616360.1| - 9.9e-11 41.4 3.6 2.8e-10 40.0 2.5 1.8 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.1 gi|20090285|ref|NP_616360.1| - 5.6e-06 26.3 2.0 0.023 14.6 0.1 3.2 3 0 0 3 3 3 2 DDE domain DZR PF12773.2 gi|20090285|ref|NP_616360.1| - 0.0042 16.8 1.6 0.018 14.8 0.7 2.4 2 0 0 2 2 2 1 Double zinc ribbon Apolipoprotein PF01442.13 gi|20090285|ref|NP_616360.1| - 0.028 13.9 2.3 0.031 13.8 0.6 1.7 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain SlyX PF04102.7 gi|20090285|ref|NP_616360.1| - 0.036 14.4 3.2 5.9 7.3 0.8 2.8 2 0 0 2 2 2 0 SlyX zf-ribbon_3 PF13248.1 gi|20090285|ref|NP_616360.1| - 0.057 12.6 3.4 0.46 9.7 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain Takusan PF04822.8 gi|20090285|ref|NP_616360.1| - 0.17 11.6 4.2 0.19 11.5 1.7 2.0 2 0 0 2 2 2 0 Takusan Mut7-C PF01927.11 gi|20090285|ref|NP_616360.1| - 0.17 11.8 4.1 0.065 13.2 0.6 1.9 2 0 0 2 2 2 0 Mut7-C RNAse domain AATF-Che1 PF13339.1 gi|20090285|ref|NP_616360.1| - 0.41 10.8 3.7 4.9 7.3 0.0 2.4 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor DUF164 PF02591.10 gi|20090285|ref|NP_616360.1| - 0.49 10.2 0.1 0.49 10.2 0.0 2.4 3 0 0 3 3 3 0 Putative zinc ribbon domain GrpE PF01025.14 gi|20090285|ref|NP_616360.1| - 0.79 9.2 5.4 0.22 11.0 0.7 2.2 2 1 1 3 3 3 0 GrpE zf-RING_5 PF14634.1 gi|20090285|ref|NP_616360.1| - 1 9.1 6.9 2.6 7.8 0.0 3.1 2 1 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|20090285|ref|NP_616360.1| - 1.3 8.6 8.3 1.5 8.4 0.4 2.9 2 0 0 2 2 2 0 zinc-ribbon domain Oxidored_FMN PF00724.15 gi|20090286|ref|NP_616361.1| - 6.7e-79 265.3 0.0 7.8e-79 265.1 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|20090286|ref|NP_616361.1| - 0.00073 18.4 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|20090286|ref|NP_616361.1| - 0.0011 18.2 0.1 0.0024 17.1 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Pep_M12B_propep PF01562.14 gi|20090287|ref|NP_616362.1| - 0.00012 21.8 1.8 0.0019 17.9 0.2 2.5 2 1 1 3 3 3 2 Reprolysin family propeptide Cytochrom_C_asm PF01578.15 gi|20090288|ref|NP_616363.1| - 1.6e-30 106.2 13.5 1.6e-30 106.2 9.4 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein BCHF PF07284.6 gi|20090288|ref|NP_616363.1| - 0.0016 18.2 3.3 0.0016 18.2 2.3 1.8 2 0 0 2 2 2 1 2-vinyl bacteriochlorophyllide hydratase (BCHF) YesK PF14150.1 gi|20090288|ref|NP_616363.1| - 0.062 13.3 0.3 0.062 13.3 0.2 3.3 4 1 0 4 4 4 0 YesK-like protein OST3_OST6 PF04756.8 gi|20090288|ref|NP_616363.1| - 1.5 8.3 9.2 0.095 12.2 0.6 2.7 3 1 0 3 3 3 0 OST3 / OST6 family CcmB PF03379.8 gi|20090289|ref|NP_616364.1| - 8.9e-31 106.7 18.7 1.1e-30 106.5 13.0 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|20090289|ref|NP_616364.1| - 4.6e-14 52.0 14.5 4.6e-14 52.0 10.0 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|20090289|ref|NP_616364.1| - 2.1e-11 43.1 15.2 3.1e-11 42.6 10.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090289|ref|NP_616364.1| - 2.8e-10 39.7 14.2 2.8e-10 39.7 9.9 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090289|ref|NP_616364.1| - 7.1e-08 31.9 20.0 9.4e-08 31.4 13.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20090289|ref|NP_616364.1| - 0.11 11.7 16.8 0.2 10.9 11.6 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|20090290|ref|NP_616365.1| - 2e-33 115.5 0.0 2.7e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090290|ref|NP_616365.1| - 7e-15 55.7 1.0 3.5e-13 50.1 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|20090290|ref|NP_616365.1| - 1.7e-06 28.5 1.0 2.6e-06 27.9 0.7 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20090290|ref|NP_616365.1| - 8.1e-05 22.0 0.1 0.00015 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|20090290|ref|NP_616365.1| - 0.00047 19.9 0.0 0.00063 19.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|20090290|ref|NP_616365.1| - 0.00047 19.7 0.0 0.00082 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|20090290|ref|NP_616365.1| - 0.00071 18.1 0.1 0.0009 17.8 0.1 1.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20090290|ref|NP_616365.1| - 0.0013 18.8 0.3 0.0057 16.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|20090290|ref|NP_616365.1| - 0.0024 17.3 0.2 0.0082 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20090290|ref|NP_616365.1| - 0.0026 17.0 0.1 0.059 12.5 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20090290|ref|NP_616365.1| - 0.0026 17.7 0.2 0.0048 16.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|20090290|ref|NP_616365.1| - 0.003 17.1 0.0 0.0081 15.7 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|20090290|ref|NP_616365.1| - 0.0053 16.2 0.1 0.016 14.6 0.0 1.8 2 1 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|20090290|ref|NP_616365.1| - 0.0056 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain MutS_V PF00488.16 gi|20090290|ref|NP_616365.1| - 0.0059 16.0 0.0 0.12 11.7 0.0 2.1 2 0 0 2 2 2 1 MutS domain V AAA_17 PF13207.1 gi|20090290|ref|NP_616365.1| - 0.0065 17.2 0.2 0.015 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|20090290|ref|NP_616365.1| - 0.0071 16.0 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA_15 PF13175.1 gi|20090290|ref|NP_616365.1| - 0.0085 15.1 0.0 0.019 14.0 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|20090290|ref|NP_616365.1| - 0.011 14.9 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|20090290|ref|NP_616365.1| - 0.017 15.3 0.1 0.069 13.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|20090290|ref|NP_616365.1| - 0.023 14.3 0.3 0.13 11.9 0.1 2.1 2 1 0 2 2 2 0 NACHT domain AAA_24 PF13479.1 gi|20090290|ref|NP_616365.1| - 0.036 13.6 0.1 0.058 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|20090290|ref|NP_616365.1| - 0.053 12.6 0.0 0.085 12.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|20090290|ref|NP_616365.1| - 0.06 12.0 0.0 0.063 11.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|20090290|ref|NP_616365.1| - 0.061 13.2 0.0 0.16 11.8 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|20090290|ref|NP_616365.1| - 0.062 13.6 0.4 0.19 12.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|20090290|ref|NP_616365.1| - 0.078 12.9 0.1 0.19 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|20090290|ref|NP_616365.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Adeno_IVa2 PF02456.10 gi|20090290|ref|NP_616365.1| - 0.11 11.1 0.0 0.18 10.4 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF3584 PF12128.3 gi|20090290|ref|NP_616365.1| - 0.12 9.6 0.0 0.19 9.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.17 gi|20090290|ref|NP_616365.1| - 0.17 10.7 0.2 1.2 7.9 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain PMSR PF01625.16 gi|20090291|ref|NP_616366.1| - 9.3e-65 217.2 1.6 1.2e-64 216.9 1.1 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PBP PF01161.15 gi|20090292|ref|NP_616367.1| - 1e-36 125.9 0.0 1.4e-36 125.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein GRP PF07172.6 gi|20090292|ref|NP_616367.1| - 0.069 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycine rich protein family DUF362 PF04015.7 gi|20090293|ref|NP_616368.1| - 3.6e-43 147.4 0.0 4.5e-43 147.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) TOBE PF03459.12 gi|20090293|ref|NP_616368.1| - 0.022 14.8 0.1 0.51 10.4 0.0 2.5 2 0 0 2 2 2 0 TOBE domain rve PF00665.21 gi|20090294|ref|NP_616369.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20090294|ref|NP_616369.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20090294|ref|NP_616369.1| - 6.8e-05 22.9 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20090294|ref|NP_616369.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20090294|ref|NP_616369.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20090294|ref|NP_616369.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal TrkA_C PF02080.16 gi|20090295|ref|NP_616370.1| - 1.6e-28 98.0 0.1 2.3e-13 49.5 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|20090295|ref|NP_616370.1| - 4.5e-16 59.0 14.0 3.3e-09 37.0 4.3 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|20090295|ref|NP_616370.1| - 2.5e-05 23.5 7.3 0.016 14.3 0.8 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 MgtE PF01769.11 gi|20090296|ref|NP_616371.1| - 5e-15 55.9 8.9 5e-15 55.9 6.2 1.5 2 0 0 2 2 2 1 Divalent cation transporter ABC2_membrane_4 PF12730.2 gi|20090296|ref|NP_616371.1| - 1.2 8.2 17.6 0.11 11.6 8.2 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein MgtE PF01769.11 gi|20090297|ref|NP_616372.1| - 1.9e-21 76.7 7.2 1.9e-21 76.7 5.0 1.6 2 0 0 2 2 2 1 Divalent cation transporter DUF1469 PF07332.6 gi|20090297|ref|NP_616372.1| - 0.78 9.4 6.9 0.2 11.4 2.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) NUDIX PF00293.23 gi|20090298|ref|NP_616373.1| - 3.2e-21 75.3 0.0 7.8e-21 74.1 0.0 1.7 2 0 0 2 2 2 1 NUDIX domain NUDIX-like PF09296.6 gi|20090298|ref|NP_616373.1| - 4.5e-13 49.3 0.0 7.1e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain zf-NADH-PPase PF09297.6 gi|20090298|ref|NP_616373.1| - 1.2e-12 47.0 3.8 1.9e-12 46.4 2.7 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|20090298|ref|NP_616373.1| - 0.00053 19.7 0.8 0.00092 18.9 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|20090298|ref|NP_616373.1| - 0.001 18.6 1.5 0.0018 17.8 1.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|20090298|ref|NP_616373.1| - 0.0014 18.4 1.7 0.0022 17.7 0.1 1.9 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.4 gi|20090298|ref|NP_616373.1| - 0.031 13.9 1.0 8.7 6.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|20090298|ref|NP_616373.1| - 0.054 12.7 6.0 2.5 7.4 0.4 2.3 1 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|20090298|ref|NP_616373.1| - 0.061 12.8 4.5 0.34 10.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|20090298|ref|NP_616373.1| - 0.1 12.3 0.7 0.17 11.5 0.5 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RRN7 PF11781.3 gi|20090298|ref|NP_616373.1| - 0.21 11.1 4.4 2.6 7.6 0.1 2.5 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C3HC4 PF00097.20 gi|20090298|ref|NP_616373.1| - 0.28 10.8 1.6 0.49 10.0 1.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nudix_N_2 PF14803.1 gi|20090298|ref|NP_616373.1| - 0.32 10.7 3.2 3.4 7.4 2.2 2.2 1 1 0 1 1 1 0 Nudix N-terminal zf-C3HC4_2 PF13923.1 gi|20090298|ref|NP_616373.1| - 0.33 10.9 1.5 0.61 10.1 1.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|20090298|ref|NP_616373.1| - 1.2 9.0 3.5 3.1 7.8 2.4 1.7 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|20090298|ref|NP_616373.1| - 3.6 7.6 5.3 1.5 8.7 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Methyltransf_26 PF13659.1 gi|20090299|ref|NP_616374.1| - 1.3e-16 60.6 0.0 2e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090299|ref|NP_616374.1| - 7.1e-14 51.5 0.0 1e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|20090299|ref|NP_616374.1| - 1.4e-09 37.7 0.0 2.1e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090299|ref|NP_616374.1| - 3.6e-09 37.1 0.0 7.7e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090299|ref|NP_616374.1| - 8e-07 28.9 0.0 0.00033 20.3 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090299|ref|NP_616374.1| - 1e-06 29.1 0.0 2.2e-05 24.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090299|ref|NP_616374.1| - 4.4e-06 27.0 0.0 0.015 15.8 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain PCMT PF01135.14 gi|20090299|ref|NP_616374.1| - 2.4e-05 23.9 0.0 8.6e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|20090299|ref|NP_616374.1| - 0.00011 21.6 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|20090299|ref|NP_616374.1| - 0.002 17.3 0.0 0.012 14.7 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|20090299|ref|NP_616374.1| - 0.0026 16.6 0.0 0.0036 16.2 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase RrnaAD PF00398.15 gi|20090299|ref|NP_616374.1| - 0.0049 15.9 0.0 0.0067 15.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|20090299|ref|NP_616374.1| - 0.0062 15.6 0.0 0.74 8.8 0.0 2.1 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|20090299|ref|NP_616374.1| - 0.021 14.4 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_8 PF05148.10 gi|20090299|ref|NP_616374.1| - 0.021 14.4 0.3 0.063 12.8 0.1 1.7 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_24 PF13578.1 gi|20090299|ref|NP_616374.1| - 0.042 14.6 0.0 0.33 11.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090299|ref|NP_616374.1| - 0.047 14.0 0.0 0.12 12.7 0.0 1.7 2 1 0 2 2 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|20090299|ref|NP_616374.1| - 0.051 13.0 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|20090299|ref|NP_616374.1| - 0.051 12.9 0.0 0.13 11.6 0.0 1.6 1 1 0 1 1 1 0 Conserved hypothetical protein 95 FtsJ PF01728.14 gi|20090299|ref|NP_616374.1| - 0.088 12.7 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 FtsJ-like methyltransferase GCD14 PF08704.5 gi|20090299|ref|NP_616374.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DUF2431 PF10354.4 gi|20090299|ref|NP_616374.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Methyltransf_32 PF13679.1 gi|20090299|ref|NP_616374.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|20090300|ref|NP_616375.1| - 6.1e-59 199.1 0.0 7.3e-59 198.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|20090300|ref|NP_616375.1| - 1.8e-10 41.3 0.0 3.2e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090300|ref|NP_616375.1| - 5.4e-09 36.0 0.0 7.6e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090300|ref|NP_616375.1| - 1.2e-07 31.4 0.0 1.7e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|20090300|ref|NP_616375.1| - 7.4e-07 28.9 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|20090300|ref|NP_616375.1| - 8.6e-06 26.1 0.0 1.6e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090300|ref|NP_616375.1| - 4.9e-05 23.6 0.0 0.0001 22.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090300|ref|NP_616375.1| - 9.6e-05 22.1 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090300|ref|NP_616375.1| - 9.7e-05 21.7 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|20090300|ref|NP_616375.1| - 0.00051 19.4 0.0 0.00075 18.9 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|20090300|ref|NP_616375.1| - 0.00053 19.0 0.0 0.00088 18.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|20090300|ref|NP_616375.1| - 0.0011 19.4 0.0 0.0036 17.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|20090300|ref|NP_616375.1| - 0.0037 16.3 0.0 0.0058 15.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|20090300|ref|NP_616375.1| - 0.0043 16.4 0.0 0.0084 15.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DREV PF05219.7 gi|20090300|ref|NP_616375.1| - 0.0097 14.8 0.0 0.016 14.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase PCMT PF01135.14 gi|20090300|ref|NP_616375.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.6 gi|20090300|ref|NP_616375.1| - 0.022 13.4 0.0 0.035 12.7 0.0 1.5 1 1 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Spermine_synth PF01564.12 gi|20090300|ref|NP_616375.1| - 0.031 13.2 0.1 0.046 12.6 0.1 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase RsmJ PF04378.8 gi|20090300|ref|NP_616375.1| - 0.12 11.3 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ Methyltransf_32 PF13679.1 gi|20090300|ref|NP_616375.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.7 gi|20090301|ref|NP_616376.1| - 9.1e-69 230.7 0.1 1e-68 230.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|20090301|ref|NP_616376.1| - 0.00062 19.7 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|20090301|ref|NP_616376.1| - 0.0031 17.4 0.0 0.0071 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|20090303|ref|NP_616378.1| - 3.7e-16 59.1 1.8 4.3e-16 58.9 1.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Shigella_OspC PF06128.6 gi|20090303|ref|NP_616378.1| - 0.062 12.7 0.0 0.065 12.7 0.0 1.1 1 0 0 1 1 1 0 Shigella flexneri OspC protein FliG_M PF14841.1 gi|20090303|ref|NP_616378.1| - 0.1 12.5 1.6 0.3 11.1 0.3 2.2 1 1 1 2 2 2 0 FliG middle domain RsbRD_N PF14361.1 gi|20090303|ref|NP_616378.1| - 0.11 12.8 0.2 2.1 8.8 0.1 2.2 2 0 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain EF-hand_8 PF13833.1 gi|20090303|ref|NP_616378.1| - 0.13 11.9 0.1 0.45 10.1 0.0 1.9 2 0 0 2 2 2 0 EF-hand domain pair FumaraseC_C PF10415.4 gi|20090303|ref|NP_616378.1| - 0.21 11.7 1.3 2.9 8.0 0.0 2.7 3 0 0 3 3 3 0 Fumarase C C-terminus Ribosomal_L21e PF01157.13 gi|20090305|ref|NP_616380.1| - 1.2e-27 95.6 0.3 1.3e-27 95.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|20090306|ref|NP_616381.1| - 1.5e-11 44.4 0.2 4.4e-11 42.8 0.0 1.9 2 0 0 2 2 2 1 THUMP domain DNA_pol3_a_NI PF14480.1 gi|20090306|ref|NP_616381.1| - 0.0043 16.6 0.3 0.0089 15.6 0.2 1.5 1 0 0 1 1 1 1 DNA polymerase III polC-type N-terminus I Methyltrn_RNA_2 PF04013.7 gi|20090307|ref|NP_616382.1| - 7.6e-65 218.1 0.0 8.7e-65 218.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Metallophos_2 PF12850.2 gi|20090308|ref|NP_616383.1| - 4.9e-23 81.6 0.0 7e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20090308|ref|NP_616383.1| - 3.1e-14 52.8 0.1 1.5e-13 50.6 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|20090308|ref|NP_616383.1| - 5.7e-14 51.8 0.4 2.9e-09 36.4 0.1 2.7 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF4010 PF13194.1 gi|20090309|ref|NP_616384.1| - 6.4e-50 169.3 16.3 6.4e-50 169.3 11.3 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|20090309|ref|NP_616384.1| - 3.3e-07 30.2 6.8 3.3e-07 30.2 4.7 3.7 3 2 0 3 3 3 1 MgtC family PQ-loop PF04193.9 gi|20090310|ref|NP_616385.1| - 0.082 12.4 2.1 0.12 11.8 1.5 1.3 1 0 0 1 1 1 0 PQ loop repeat Cupredoxin_1 PF13473.1 gi|20090311|ref|NP_616386.1| - 5.5e-06 26.2 0.0 6.2e-06 26.0 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|20090311|ref|NP_616386.1| - 0.00058 20.0 0.1 0.015 15.4 0.1 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PKD PF00801.15 gi|20090311|ref|NP_616386.1| - 0.068 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 PKD domain Cupredoxin_1 PF13473.1 gi|20090313|ref|NP_616388.1| - 2.7e-05 24.0 1.6 2.8e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|20090313|ref|NP_616388.1| - 0.025 14.7 0.2 0.73 10.0 0.0 2.6 1 1 1 2 2 2 0 Copper binding proteins, plastocyanin/azurin family Mucin PF01456.12 gi|20090313|ref|NP_616388.1| - 0.062 13.0 4.2 0.041 13.6 1.8 1.4 1 1 0 1 1 1 0 Mucin-like glycoprotein TRM PF02005.11 gi|20090314|ref|NP_616389.1| - 4e-104 348.5 0.0 4.8e-104 348.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DUF3195 PF11424.3 gi|20090314|ref|NP_616389.1| - 0.00064 19.8 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) Met_10 PF02475.11 gi|20090314|ref|NP_616389.1| - 0.00083 18.9 0.0 0.0021 17.7 0.0 1.7 2 0 0 2 2 2 1 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|20090314|ref|NP_616389.1| - 0.0052 16.1 0.0 0.0087 15.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 zf-ribbon_3 PF13248.1 gi|20090314|ref|NP_616389.1| - 0.024 13.8 5.6 0.69 9.1 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Methyltransf_26 PF13659.1 gi|20090314|ref|NP_616389.1| - 0.029 14.3 0.0 0.077 13.0 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DZR PF12773.2 gi|20090314|ref|NP_616389.1| - 0.059 13.1 1.5 0.18 11.6 0.7 2.1 2 1 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|20090314|ref|NP_616389.1| - 0.56 9.9 3.7 10 5.8 0.1 3.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|20090314|ref|NP_616389.1| - 1.4 8.5 7.6 6.4 6.4 0.6 3.3 3 0 0 3 3 3 0 zinc-ribbon domain MarR PF01047.17 gi|20090315|ref|NP_616390.1| - 0.0023 17.5 0.0 0.0057 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|20090315|ref|NP_616390.1| - 0.008 15.9 0.5 0.026 14.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|20090315|ref|NP_616390.1| - 0.018 15.3 0.0 0.045 14.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20090315|ref|NP_616390.1| - 0.029 14.0 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family Ribosomal_L6e PF01159.14 gi|20090315|ref|NP_616390.1| - 0.059 13.6 2.5 0.15 12.2 0.6 2.1 1 1 1 2 2 2 0 Ribosomal protein L6e DUF2250 PF10007.4 gi|20090315|ref|NP_616390.1| - 0.09 12.6 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Atg14 PF10186.4 gi|20090315|ref|NP_616390.1| - 0.12 11.3 1.4 0.15 10.9 1.0 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1192 PF06698.6 gi|20090315|ref|NP_616390.1| - 0.13 12.0 1.5 0.29 10.9 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) Baculo_helicase PF04735.7 gi|20090315|ref|NP_616390.1| - 0.17 9.1 0.4 0.21 8.9 0.3 1.1 1 0 0 1 1 1 0 Baculovirus DNA helicase TMEM247 PF15444.1 gi|20090315|ref|NP_616390.1| - 0.26 11.0 2.3 0.33 10.7 1.6 1.2 1 0 0 1 1 1 0 Transmembrane protein 247 Sigma70_ner PF04546.8 gi|20090315|ref|NP_616390.1| - 0.99 8.9 7.9 1.9 8.0 5.4 1.6 1 1 0 1 1 1 0 Sigma-70, non-essential region Syntaxin PF00804.20 gi|20090315|ref|NP_616390.1| - 6.3 7.0 10.3 47 4.2 5.5 2.9 1 1 1 2 2 2 0 Syntaxin DUF2110 PF09883.4 gi|20090316|ref|NP_616391.1| - 4.7e-89 297.8 0.6 5.4e-89 297.6 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) V4R PF02830.13 gi|20090317|ref|NP_616392.1| - 7.3e-18 64.1 0.3 1.8e-17 62.9 0.2 1.7 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|20090317|ref|NP_616392.1| - 7.2e-11 41.5 0.0 1.3e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|20090317|ref|NP_616392.1| - 8.9e-06 25.2 0.0 1.5e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20090317|ref|NP_616392.1| - 1.9e-05 24.8 0.0 3.5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|20090317|ref|NP_616392.1| - 2.2e-05 24.1 0.0 6.6e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|20090317|ref|NP_616392.1| - 0.0077 15.7 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|20090317|ref|NP_616392.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|20090317|ref|NP_616392.1| - 0.014 15.0 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|20090317|ref|NP_616392.1| - 0.016 15.2 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PspA_IM30 PF04012.7 gi|20090319|ref|NP_616394.1| - 1.8e-27 96.1 34.5 2.1e-27 95.9 23.9 1.0 1 0 0 1 1 1 1 PspA/IM30 family NOG1 PF06858.9 gi|20090319|ref|NP_616394.1| - 0.0073 16.1 1.0 0.15 11.9 0.0 2.8 2 1 1 3 3 3 1 Nucleolar GTP-binding protein 1 (NOG1) Osmo_CC PF08946.5 gi|20090319|ref|NP_616394.1| - 0.041 13.9 3.1 0.041 13.9 2.2 3.0 3 0 0 3 3 3 0 Osmosensory transporter coiled coil Flagellin_C PF00700.16 gi|20090319|ref|NP_616394.1| - 0.14 12.3 11.8 0.27 11.4 0.2 3.4 2 2 0 3 3 3 0 Bacterial flagellin C-terminal helical region DUF1664 PF07889.7 gi|20090319|ref|NP_616394.1| - 0.44 10.3 15.2 0.93 9.3 2.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|20090319|ref|NP_616394.1| - 2.2 8.2 13.4 8.4 6.3 0.3 4.1 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|20090319|ref|NP_616394.1| - 3 8.1 10.9 3.1 8.0 0.4 3.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein NYD-SP28_assoc PF14775.1 gi|20090319|ref|NP_616394.1| - 8.6 6.1 8.0 14 5.4 1.1 3.1 2 1 0 2 2 2 0 Sperm tail C-terminal domain Cas_DxTHG PF09455.5 gi|20090320|ref|NP_616395.1| - 0.015 14.4 0.1 0.017 14.2 0.1 1.0 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family PP28 PF10252.4 gi|20090320|ref|NP_616395.1| - 0.038 14.0 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Casein kinase substrate phosphoprotein PP28 PrkA PF06798.7 gi|20090320|ref|NP_616395.1| - 0.065 12.5 0.2 0.08 12.2 0.1 1.1 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain Usp PF00582.21 gi|20090321|ref|NP_616396.1| - 4.8e-37 127.2 0.1 5.3e-37 127.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family HisKA_2 PF07568.7 gi|20090322|ref|NP_616397.1| - 1.7e-32 111.0 1.7 5.4e-32 109.4 1.2 1.9 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|20090322|ref|NP_616397.1| - 1.1e-17 63.8 0.4 2.7e-17 62.6 0.2 1.6 1 0 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|20090322|ref|NP_616397.1| - 4.3e-06 27.0 0.1 1.5e-05 25.3 0.1 1.9 2 0 0 2 2 2 1 HWE histidine kinase PAS PF00989.19 gi|20090322|ref|NP_616397.1| - 4e-05 23.3 0.6 0.00077 19.2 0.1 2.8 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|20090322|ref|NP_616397.1| - 0.00017 21.9 0.3 0.0094 16.3 0.1 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.21 gi|20090322|ref|NP_616397.1| - 0.00039 20.0 0.0 0.0016 18.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|20090322|ref|NP_616397.1| - 0.00085 19.3 0.0 0.2 11.7 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|20090322|ref|NP_616397.1| - 0.0059 16.3 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SAF_2 PF13144.1 gi|20090323|ref|NP_616398.1| - 0.019 14.4 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 SAF-like DUF4469 PF14734.1 gi|20090323|ref|NP_616398.1| - 0.041 13.7 0.3 0.1 12.4 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4469) with IG-like fold Pput2613-deam PF14427.1 gi|20090323|ref|NP_616398.1| - 0.13 11.9 1.3 0.25 11.0 0.6 1.8 1 1 1 2 2 2 0 Pput_2613-like deaminase FAINT PF04385.10 gi|20090323|ref|NP_616398.1| - 0.15 11.9 0.4 0.15 11.9 0.3 1.6 2 0 0 2 2 2 0 Domain of unknown function, DUF529 DUF2682 PF10909.3 gi|20090324|ref|NP_616399.1| - 0.12 12.6 0.4 0.25 11.6 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2682) ThiI PF02568.9 gi|20090325|ref|NP_616400.1| - 1.5e-51 174.7 0.0 2e-51 174.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|20090325|ref|NP_616400.1| - 2.4e-17 63.1 0.0 1.3e-16 60.8 0.0 2.1 2 0 0 2 2 2 1 THUMP domain tRNA_Me_trans PF03054.11 gi|20090325|ref|NP_616400.1| - 0.00026 19.6 0.0 0.00072 18.2 0.0 1.7 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|20090325|ref|NP_616400.1| - 0.0003 20.1 0.0 0.089 12.0 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Response_reg PF00072.19 gi|20090327|ref|NP_616402.1| - 3.3e-18 65.7 0.2 4e-18 65.4 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|20090328|ref|NP_616403.1| - 1.2e-21 76.8 0.2 1.4e-21 76.6 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|20090329|ref|NP_616404.1| - 4.9e-92 302.1 17.8 5.5e-24 84.0 0.6 5.6 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.1 gi|20090329|ref|NP_616404.1| - 2.1e-47 159.7 1.6 5.1e-09 36.4 0.1 6.9 7 0 0 7 7 7 5 PAS domain HisKA_2 PF07568.7 gi|20090329|ref|NP_616404.1| - 1.5e-33 114.4 11.8 4.7e-33 112.8 2.7 4.1 4 0 0 4 4 4 1 Histidine kinase PAS PF00989.19 gi|20090329|ref|NP_616404.1| - 2.1e-28 98.3 1.9 1e-05 25.2 0.0 7.1 6 2 0 6 6 6 6 PAS fold PAS_4 PF08448.5 gi|20090329|ref|NP_616404.1| - 1.8e-19 69.8 0.3 4.2e-10 39.6 0.0 6.1 6 1 0 6 6 6 2 PAS fold PAS_11 PF14598.1 gi|20090329|ref|NP_616404.1| - 3.1e-16 59.3 0.2 0.019 14.9 0.0 5.2 4 1 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|20090329|ref|NP_616404.1| - 8.2e-12 44.8 0.1 6.9e-11 41.8 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20090329|ref|NP_616404.1| - 1.7e-05 24.4 0.0 0.014 15.2 0.0 3.6 3 0 0 3 3 2 1 PAS domain HWE_HK PF07536.9 gi|20090329|ref|NP_616404.1| - 0.00014 22.2 0.5 0.00042 20.6 0.4 1.8 1 0 0 1 1 1 1 HWE histidine kinase PAS_10 PF13596.1 gi|20090329|ref|NP_616404.1| - 0.0094 16.2 0.6 0.37 11.0 0.0 3.9 5 0 0 5 5 4 1 PAS domain Methyltransf_11 PF08241.7 gi|20090329|ref|NP_616404.1| - 0.027 14.9 0.0 22 5.6 0.0 4.1 4 0 0 4 4 3 0 Methyltransferase domain YcgL PF05166.8 gi|20090329|ref|NP_616404.1| - 0.032 14.3 1.0 4.3 7.5 0.0 3.4 3 0 0 3 3 3 0 YcgL domain Nit_Regul_Hom PF10126.4 gi|20090329|ref|NP_616404.1| - 0.054 13.2 0.1 1.7 8.4 0.0 2.9 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII HATPase_c_2 PF13581.1 gi|20090329|ref|NP_616404.1| - 0.074 12.8 0.0 0.41 10.4 0.0 2.4 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain EF1_GNE PF00736.14 gi|20090330|ref|NP_616405.1| - 3.3e-22 77.9 0.7 3.5e-22 77.8 0.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|20090331|ref|NP_616406.1| - 7.5e-19 67.5 16.8 9.9e-11 41.5 2.9 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|20090331|ref|NP_616406.1| - 0.00014 21.6 11.0 0.02 14.6 7.6 2.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20090331|ref|NP_616406.1| - 0.00016 21.0 16.8 0.00023 20.5 2.2 2.9 2 2 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20090331|ref|NP_616406.1| - 0.0014 18.1 8.9 0.0048 16.5 3.1 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|20090331|ref|NP_616406.1| - 0.0028 16.7 14.4 0.39 9.9 0.6 3.5 4 0 0 4 4 3 2 zinc-ribbon domain DUF2039 PF10217.4 gi|20090331|ref|NP_616406.1| - 0.003 17.5 3.1 0.003 17.5 2.2 1.7 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2039) tRNA-synt_1g PF09334.6 gi|20090331|ref|NP_616406.1| - 0.015 13.9 1.7 0.016 13.8 1.2 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-C4_Topoisom PF01396.14 gi|20090331|ref|NP_616406.1| - 0.022 14.2 10.6 2.5 7.6 0.1 3.4 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS91 PF14319.1 gi|20090331|ref|NP_616406.1| - 0.081 12.4 8.8 0.13 11.7 6.1 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-HIT PF04438.11 gi|20090331|ref|NP_616406.1| - 0.14 11.8 15.4 0.18 11.4 3.4 2.9 1 1 1 2 2 2 0 HIT zinc finger zf-C3HC4_3 PF13920.1 gi|20090331|ref|NP_616406.1| - 0.18 11.4 10.6 0.65 9.7 2.8 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DNA_RNApol_7kD PF03604.8 gi|20090331|ref|NP_616406.1| - 0.2 11.1 12.0 1.6 8.2 0.1 3.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C3HC4_4 PF15227.1 gi|20090331|ref|NP_616406.1| - 0.23 11.3 10.0 0.27 11.1 0.8 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING Prok-RING_1 PF14446.1 gi|20090331|ref|NP_616406.1| - 0.36 10.5 10.3 3.6 7.3 3.5 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4 PF00097.20 gi|20090331|ref|NP_616406.1| - 0.45 10.2 12.5 0.21 11.3 1.2 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.8 gi|20090331|ref|NP_616406.1| - 0.45 8.1 6.2 0.51 7.9 4.3 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 UPF0547 PF10571.4 gi|20090331|ref|NP_616406.1| - 0.49 10.1 12.3 1.6 8.4 5.7 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|20090331|ref|NP_616406.1| - 0.49 10.1 14.0 4.2 7.1 0.1 3.1 2 1 0 2 2 2 0 Nudix N-terminal NMD3 PF04981.8 gi|20090331|ref|NP_616406.1| - 0.52 9.3 8.2 0.79 8.7 5.6 1.4 1 1 1 2 2 2 0 NMD3 family zf-Mss51 PF13824.1 gi|20090331|ref|NP_616406.1| - 0.54 10.1 12.6 7.8 6.4 1.5 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 C1_3 PF07649.7 gi|20090331|ref|NP_616406.1| - 0.78 9.8 11.2 0.35 10.9 0.9 2.3 2 0 0 2 2 2 0 C1-like domain zf-piccolo PF05715.8 gi|20090331|ref|NP_616406.1| - 0.85 9.6 5.6 0.88 9.6 1.7 2.0 2 0 0 2 2 2 0 Piccolo Zn-finger IBR PF01485.16 gi|20090331|ref|NP_616406.1| - 0.98 9.3 11.1 42 4.1 7.7 2.3 1 1 0 1 1 1 0 IBR domain Tnp_zf-ribbon_2 PF13842.1 gi|20090331|ref|NP_616406.1| - 1 9.8 13.8 0.14 12.6 2.2 2.8 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C2HC5 PF06221.8 gi|20090331|ref|NP_616406.1| - 1 9.1 10.9 3.7 7.3 2.2 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-tcix PF14952.1 gi|20090331|ref|NP_616406.1| - 1.1 8.6 17.4 5.1 6.5 3.3 3.1 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding C1_1 PF00130.17 gi|20090331|ref|NP_616406.1| - 1.2 8.9 10.4 0.2 11.4 0.6 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.1 gi|20090331|ref|NP_616406.1| - 1.3 9.0 9.3 2.5 8.0 0.6 2.6 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|20090331|ref|NP_616406.1| - 1.6 8.7 15.0 12 5.9 3.2 3.1 1 1 2 3 3 3 0 Zinc ribbon domain zf-HYPF PF07503.7 gi|20090331|ref|NP_616406.1| - 1.8 8.0 13.6 6.3 6.3 0.1 2.8 2 1 0 2 2 2 0 HypF finger HypA PF01155.14 gi|20090331|ref|NP_616406.1| - 2 8.0 9.9 0.42 10.3 0.5 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Ribosomal_L37ae PF01780.14 gi|20090331|ref|NP_616406.1| - 2.7 7.9 5.9 13 5.6 4.1 2.0 1 1 0 1 1 1 0 Ribosomal L37ae protein family zinc-ribbons_6 PF07191.7 gi|20090331|ref|NP_616406.1| - 2.9 7.7 9.2 44 3.9 6.5 2.2 1 1 0 1 1 1 0 zinc-ribbons zf-UBP PF02148.14 gi|20090331|ref|NP_616406.1| - 3 8.0 7.9 0.58 10.2 0.8 2.3 2 1 1 3 3 3 0 Zn-finger in ubiquitin-hydrolases and other protein zf-TFIIB PF13453.1 gi|20090331|ref|NP_616406.1| - 3.1 7.0 15.1 7.9 5.7 0.2 2.7 2 1 0 2 2 2 0 Transcription factor zinc-finger DUF1272 PF06906.6 gi|20090331|ref|NP_616406.1| - 3.6 7.5 10.9 5.7 6.8 1.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF2296 PF10058.4 gi|20090331|ref|NP_616406.1| - 3.7 7.3 14.6 3.9 7.2 1.5 3.5 2 2 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) Opy2 PF09463.5 gi|20090331|ref|NP_616406.1| - 4.7 7.3 11.1 1.8 8.6 1.3 2.9 3 0 0 3 3 3 0 Opy2 protein zf-C2H2 PF00096.21 gi|20090331|ref|NP_616406.1| - 5.1 7.6 11.6 5.9 7.4 0.5 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.11 gi|20090331|ref|NP_616406.1| - 5.5 6.7 11.1 5 6.9 0.8 3.1 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_2 PF13923.1 gi|20090331|ref|NP_616406.1| - 5.9 7.0 10.7 1.4 9.0 1.0 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.12 gi|20090331|ref|NP_616406.1| - 6.9 6.5 16.5 1.1 9.0 0.3 3.9 2 1 2 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger TerY-C PF15616.1 gi|20090331|ref|NP_616406.1| - 7.1 6.5 11.9 0.9 9.4 5.3 1.7 1 1 1 2 2 2 0 TerY-C metal binding domain ADK_lid PF05191.9 gi|20090331|ref|NP_616406.1| - 7.4 6.3 12.2 8.5 6.1 0.6 3.7 3 1 0 4 4 4 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.6 gi|20090331|ref|NP_616406.1| - 9 5.9 14.7 3.3 7.3 0.2 3.9 3 1 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_4 PF13894.1 gi|20090331|ref|NP_616406.1| - 9.4 6.8 14.2 7.7 7.0 0.6 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger RRN7 PF11781.3 gi|20090331|ref|NP_616406.1| - 9.7 5.7 14.9 15 5.1 2.4 3.5 2 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 PhnA_Zn_Ribbon PF08274.7 gi|20090331|ref|NP_616406.1| - 9.7 6.0 13.4 2.9 7.7 5.3 2.7 2 1 0 2 2 1 0 PhnA Zinc-Ribbon AA_kinase PF00696.23 gi|20090332|ref|NP_616407.1| - 6.1e-11 42.3 0.0 1.3e-09 38.0 0.0 2.0 1 1 0 1 1 1 1 Amino acid kinase family Hydantoinase_A PF01968.13 gi|20090333|ref|NP_616408.1| - 6.1e-28 97.7 0.8 8.9e-27 93.9 0.2 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|20090333|ref|NP_616408.1| - 0.0011 17.4 0.1 0.021 13.1 0.0 2.2 2 0 0 2 2 2 2 MutL protein Hydant_A_N PF05378.8 gi|20090333|ref|NP_616408.1| - 2.1 7.8 6.5 29 4.0 2.0 3.4 2 2 1 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region ATP-grasp_3 PF02655.9 gi|20090334|ref|NP_616409.1| - 1.1e-52 178.1 0.0 1.6e-52 177.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|20090334|ref|NP_616409.1| - 1.4e-07 31.3 0.0 9.1e-07 28.7 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20090334|ref|NP_616409.1| - 0.00059 18.6 0.0 0.14 10.8 0.0 3.0 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|20090334|ref|NP_616409.1| - 0.023 14.1 0.0 4.2 6.7 0.0 2.3 2 0 0 2 2 2 0 RimK-like ATP-grasp domain DoxX_3 PF13781.1 gi|20090335|ref|NP_616410.1| - 0.03 14.6 0.3 0.03 14.6 0.2 2.0 1 1 1 2 2 2 0 DoxX-like family TrbC PF04956.8 gi|20090335|ref|NP_616410.1| - 1.6 8.7 13.4 0.86 9.6 1.9 3.0 2 1 1 3 3 3 0 TrbC/VIRB2 family GrpE PF01025.14 gi|20090336|ref|NP_616411.1| - 3e-47 160.2 4.3 3.9e-47 159.8 3.0 1.2 1 1 0 1 1 1 1 GrpE HSP70 PF00012.15 gi|20090337|ref|NP_616412.1| - 1.6e-250 832.2 13.6 7.5e-221 734.2 6.3 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|20090337|ref|NP_616412.1| - 1.1e-16 60.3 1.6 1.1e-16 60.3 1.1 2.4 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|20090337|ref|NP_616412.1| - 2e-05 24.3 0.0 4.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|20090337|ref|NP_616412.1| - 0.00017 21.4 6.4 0.0025 17.6 0.7 4.3 2 1 0 2 2 2 1 Cell division protein FtsA StbA PF06406.6 gi|20090337|ref|NP_616412.1| - 0.065 12.1 0.1 0.065 12.1 0.1 2.5 4 0 0 4 4 4 0 StbA protein DUF3347 PF11827.3 gi|20090337|ref|NP_616412.1| - 1.7 8.6 12.5 9.8 6.1 7.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) CTDII PF01556.13 gi|20090338|ref|NP_616413.1| - 3.1e-29 100.6 0.7 1.3e-20 73.0 0.1 3.3 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|20090338|ref|NP_616413.1| - 3.7e-29 100.2 3.0 3.7e-29 100.2 2.1 2.1 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|20090338|ref|NP_616413.1| - 1.3e-15 57.1 15.6 2.2e-15 56.4 10.8 1.4 1 0 0 1 1 1 1 DnaJ central domain Prim_Zn_Ribbon PF08273.7 gi|20090338|ref|NP_616413.1| - 0.0002 21.3 13.0 0.021 14.8 0.3 3.4 3 0 0 3 3 3 2 Zinc-binding domain of primase-helicase Dehydrin PF00257.14 gi|20090338|ref|NP_616413.1| - 0.0002 21.6 1.0 0.00034 20.9 0.7 1.5 1 0 0 1 1 1 1 Dehydrin Ogr_Delta PF04606.7 gi|20090338|ref|NP_616413.1| - 0.0067 16.0 5.7 0.49 10.0 0.1 2.8 2 1 0 2 2 2 2 Ogr/Delta-like zinc finger Toxin_63 PF15541.1 gi|20090338|ref|NP_616413.1| - 0.072 13.0 0.1 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative toxin 63 Lar_restr_allev PF14354.1 gi|20090338|ref|NP_616413.1| - 0.21 11.8 9.9 3 8.2 2.3 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|20090338|ref|NP_616413.1| - 1.4 8.6 6.6 5.3 6.7 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|20090338|ref|NP_616413.1| - 6.4 6.8 10.5 6.2 6.9 0.1 3.5 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TrkA_N PF02254.13 gi|20090339|ref|NP_616414.1| - 5e-50 168.3 5.6 8.7e-26 90.2 0.2 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|20090339|ref|NP_616414.1| - 5.4e-33 112.4 2.9 4.9e-17 61.2 0.0 3.9 4 0 0 4 4 4 2 TrkA-C domain Shikimate_DH PF01488.15 gi|20090339|ref|NP_616414.1| - 5.4e-09 36.2 1.5 0.00027 21.0 0.2 2.7 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|20090339|ref|NP_616414.1| - 6.5e-09 35.9 3.4 0.0015 18.7 0.6 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|20090339|ref|NP_616414.1| - 2e-06 27.6 0.3 0.083 12.6 0.1 2.6 2 1 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|20090339|ref|NP_616414.1| - 4.9e-05 23.6 1.2 0.019 15.3 0.1 3.1 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|20090339|ref|NP_616414.1| - 7.4e-05 22.5 0.1 1.8 8.4 0.0 3.7 3 0 0 3 3 3 1 ThiF family ApbA PF02558.11 gi|20090339|ref|NP_616414.1| - 0.00062 19.2 0.2 0.81 9.1 0.0 2.5 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|20090339|ref|NP_616414.1| - 0.00076 18.5 2.5 0.12 11.3 0.5 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase Pyr_redox_2 PF07992.9 gi|20090339|ref|NP_616414.1| - 0.00077 19.3 1.6 0.5 10.2 0.2 3.1 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase OCD_Mu_crystall PF02423.10 gi|20090339|ref|NP_616414.1| - 0.0028 16.4 0.6 0.16 10.6 0.0 2.2 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family ADH_zinc_N PF00107.21 gi|20090339|ref|NP_616414.1| - 0.003 17.1 0.4 0.11 12.1 0.0 3.0 3 0 0 3 3 3 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|20090339|ref|NP_616414.1| - 0.0054 16.3 0.3 0.063 12.9 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|20090339|ref|NP_616414.1| - 0.014 15.7 1.0 0.49 10.8 0.1 2.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|20090339|ref|NP_616414.1| - 0.015 14.7 0.1 0.067 12.5 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|20090339|ref|NP_616414.1| - 0.036 13.1 0.0 0.16 10.9 0.0 2.0 2 0 0 2 2 2 0 FAD binding domain Iron_permease PF04120.7 gi|20090339|ref|NP_616414.1| - 0.039 13.5 0.1 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 Low affinity iron permease 2-Hacid_dh_C PF02826.14 gi|20090339|ref|NP_616414.1| - 0.048 12.8 0.2 0.77 8.8 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CbiA PF01656.18 gi|20090339|ref|NP_616414.1| - 0.052 12.9 4.4 0.073 12.4 0.3 2.9 2 2 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain NmrA PF05368.8 gi|20090339|ref|NP_616414.1| - 0.12 11.6 3.4 0.053 12.7 0.5 1.7 2 0 0 2 2 2 0 NmrA-like family NAD_binding_8 PF13450.1 gi|20090339|ref|NP_616414.1| - 0.12 12.3 0.2 3 7.9 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|20090339|ref|NP_616414.1| - 0.16 10.8 0.1 4.6 6.0 0.0 2.4 2 0 0 2 2 2 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.16 gi|20090339|ref|NP_616414.1| - 0.17 11.7 2.9 0.4 10.5 0.6 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_3 PF03447.11 gi|20090339|ref|NP_616414.1| - 0.28 11.5 2.7 4.3 7.7 0.1 2.8 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain TrkH PF02386.11 gi|20090340|ref|NP_616415.1| - 6.3e-50 169.7 19.3 6.3e-50 169.7 13.4 2.2 1 1 1 2 2 2 2 Cation transport protein Form-deh_trans PF09163.6 gi|20090340|ref|NP_616415.1| - 0.15 11.5 1.5 9.7 5.7 0.1 2.9 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane TrkA_N PF02254.13 gi|20090341|ref|NP_616416.1| - 2.1e-47 159.9 7.7 1.1e-25 89.8 0.4 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|20090341|ref|NP_616416.1| - 1.1e-32 111.3 1.4 7.4e-16 57.5 0.0 3.2 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|20090341|ref|NP_616416.1| - 2.2e-07 31.0 3.1 0.011 15.9 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|20090341|ref|NP_616416.1| - 1.3e-06 28.5 2.7 0.027 14.5 0.1 2.5 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|20090341|ref|NP_616416.1| - 9.7e-05 22.1 0.4 0.48 10.1 0.1 2.6 2 1 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|20090341|ref|NP_616416.1| - 0.00015 21.8 1.5 0.0019 18.2 0.2 2.2 2 0 0 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|20090341|ref|NP_616416.1| - 0.0013 19.1 1.7 0.18 12.2 0.1 3.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase OCD_Mu_crystall PF02423.10 gi|20090341|ref|NP_616416.1| - 0.0023 16.7 0.8 0.08 11.6 0.0 2.2 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family Pyr_redox_2 PF07992.9 gi|20090341|ref|NP_616416.1| - 0.0027 17.6 0.8 1.1 9.1 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|20090341|ref|NP_616416.1| - 0.0047 16.3 0.6 0.045 13.1 0.1 2.7 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|20090341|ref|NP_616416.1| - 0.0061 16.0 0.2 2.2 7.7 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|20090341|ref|NP_616416.1| - 0.0082 15.1 4.6 0.77 8.6 0.8 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase ThiF PF00899.16 gi|20090341|ref|NP_616416.1| - 0.0093 15.7 0.6 26 4.6 0.0 3.5 3 0 0 3 3 3 0 ThiF family 3HCDH_N PF02737.13 gi|20090341|ref|NP_616416.1| - 0.019 14.6 1.1 0.074 12.6 0.1 2.4 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|20090341|ref|NP_616416.1| - 0.074 12.6 0.5 1.1 8.7 0.1 2.9 3 0 0 3 3 3 0 Zinc-binding dehydrogenase TrkH PF02386.11 gi|20090342|ref|NP_616417.1| - 3.7e-58 196.8 26.4 5.1e-57 193.0 10.3 2.4 2 1 0 2 2 2 2 Cation transport protein Peptidase_M50 PF02163.17 gi|20090342|ref|NP_616417.1| - 0.43 9.4 7.9 1.5 7.7 2.2 3.2 2 1 0 2 2 2 0 Peptidase family M50 FAD_binding_3 PF01494.14 gi|20090343|ref|NP_616418.1| - 2.5e-20 72.8 1.4 2.8e-18 66.0 1.0 2.8 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|20090343|ref|NP_616418.1| - 1.2e-12 47.4 1.0 1.1e-05 24.5 0.2 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|20090343|ref|NP_616418.1| - 1.5e-12 47.1 0.2 7.6e-08 31.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|20090343|ref|NP_616418.1| - 2e-11 43.6 3.0 7.2e-11 41.7 2.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20090343|ref|NP_616418.1| - 3.9e-08 32.2 1.4 6.8e-08 31.3 0.1 2.0 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|20090343|ref|NP_616418.1| - 4.1e-08 32.5 0.0 5.3e-06 25.5 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|20090343|ref|NP_616418.1| - 3.9e-07 29.9 0.0 1.2e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|20090343|ref|NP_616418.1| - 5.5e-07 29.6 8.0 2.2e-06 27.7 5.6 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|20090343|ref|NP_616418.1| - 6.4e-06 25.2 0.7 2.1e-05 23.5 0.5 2.0 2 1 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|20090343|ref|NP_616418.1| - 2.9e-05 22.9 4.0 0.038 12.6 0.2 2.5 2 1 1 3 3 3 2 Tryptophan halogenase Thi4 PF01946.12 gi|20090343|ref|NP_616418.1| - 8.6e-05 21.7 0.6 0.00039 19.5 0.1 2.2 3 0 0 3 3 3 1 Thi4 family Pyr_redox PF00070.22 gi|20090343|ref|NP_616418.1| - 0.00054 20.3 0.2 0.0054 17.1 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|20090343|ref|NP_616418.1| - 0.0037 16.9 0.1 0.02 14.5 0.0 2.2 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|20090343|ref|NP_616418.1| - 0.0038 17.3 0.1 0.0052 16.8 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|20090343|ref|NP_616418.1| - 0.03 13.8 0.2 0.077 12.5 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|20090343|ref|NP_616418.1| - 0.065 13.2 0.3 0.27 11.2 0.0 2.0 2 0 0 2 2 2 0 NADH(P)-binding SE PF08491.5 gi|20090343|ref|NP_616418.1| - 0.089 11.6 0.0 0.16 10.7 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase NAD_binding_7 PF13241.1 gi|20090343|ref|NP_616418.1| - 0.095 12.9 0.2 0.57 10.4 0.0 2.3 3 0 0 3 3 3 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|20090343|ref|NP_616418.1| - 0.11 12.2 0.2 0.21 11.2 0.0 1.6 2 0 0 2 2 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|20090343|ref|NP_616418.1| - 0.12 12.6 0.0 0.4 10.9 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain Fer4 PF00037.22 gi|20090344|ref|NP_616419.1| - 2e-14 52.4 18.0 2.5e-07 30.0 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20090344|ref|NP_616419.1| - 1.3e-10 41.4 24.1 1.8e-08 34.6 8.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20090344|ref|NP_616419.1| - 6.4e-10 39.1 8.4 3.5e-05 23.9 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20090344|ref|NP_616419.1| - 1.6e-09 37.2 13.4 0.00013 21.7 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20090344|ref|NP_616419.1| - 7.5e-09 35.2 24.1 1e-06 28.4 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20090344|ref|NP_616419.1| - 4.3e-08 33.7 9.7 0.00025 21.7 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20090344|ref|NP_616419.1| - 1.2e-07 31.6 6.9 0.0019 18.2 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20090344|ref|NP_616419.1| - 7.1e-07 28.9 9.7 1.3e-06 28.1 6.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20090344|ref|NP_616419.1| - 2e-06 27.4 15.7 0.0012 18.5 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20090344|ref|NP_616419.1| - 0.00013 22.2 10.8 0.011 16.0 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|20090344|ref|NP_616419.1| - 0.00046 20.5 14.3 0.0044 17.3 0.9 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20090344|ref|NP_616419.1| - 0.00047 20.6 13.5 0.097 13.2 0.6 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|20090344|ref|NP_616419.1| - 0.002 18.4 13.2 0.15 12.4 1.5 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20090344|ref|NP_616419.1| - 0.04 14.4 25.7 0.14 12.7 3.5 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20090344|ref|NP_616419.1| - 0.19 12.1 16.5 0.35 11.3 1.8 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|20090344|ref|NP_616419.1| - 0.54 10.1 7.9 3.7 7.4 5.5 3.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.1 gi|20090344|ref|NP_616419.1| - 0.54 10.1 7.0 0.35 10.7 3.5 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Desulfoferrod_N PF06397.7 gi|20090344|ref|NP_616419.1| - 7.3 6.0 14.1 0.12 11.8 3.1 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Radical_SAM PF04055.16 gi|20090345|ref|NP_616420.1| - 4.3e-16 59.5 1.6 1.8e-14 54.2 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20090345|ref|NP_616420.1| - 8.4e-08 32.2 2.4 9.2e-08 32.1 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20090345|ref|NP_616420.1| - 4.6e-07 30.0 1.7 1.1e-06 28.7 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain TetR_N PF00440.18 gi|20090346|ref|NP_616421.1| - 1.2e-10 40.8 0.0 2.8e-10 39.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF3741 PF12552.3 gi|20090346|ref|NP_616421.1| - 0.21 11.3 1.6 0.52 10.0 1.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3741) CofC PF01983.11 gi|20090347|ref|NP_616422.1| - 1.3e-48 164.7 0.0 1.6e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|20090347|ref|NP_616422.1| - 0.0019 18.3 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|161484937|ref|NP_616423.2| - 8.2e-19 68.3 0.3 1.5e-18 67.5 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF849 PF05853.7 gi|161484937|ref|NP_616423.2| - 0.011 14.6 0.1 0.057 12.2 0.0 2.1 1 1 1 2 2 2 0 Prokaryotic protein of unknown function (DUF849) Radical_SAM PF04055.16 gi|20090349|ref|NP_616424.1| - 6.1e-20 72.0 0.2 9.3e-20 71.4 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20090349|ref|NP_616424.1| - 0.046 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer2 PF00111.22 gi|20090349|ref|NP_616424.1| - 0.053 13.2 0.2 0.12 12.1 0.2 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|20090349|ref|NP_616424.1| - 0.086 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Radical_SAM PF04055.16 gi|20090350|ref|NP_616425.1| - 6.1e-15 55.7 0.0 1.8e-14 54.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily NAD_binding_8 PF13450.1 gi|20090351|ref|NP_616426.1| - 4.2e-12 45.9 0.1 1.4e-11 44.2 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|20090351|ref|NP_616426.1| - 5.6e-10 38.6 1.2 4.8e-05 22.4 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|20090351|ref|NP_616426.1| - 6e-09 35.2 0.2 3.8e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Amino_oxidase PF01593.19 gi|20090351|ref|NP_616426.1| - 6.5e-09 35.3 0.0 0.0015 17.6 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|20090351|ref|NP_616426.1| - 2.5e-06 26.2 1.9 0.0028 16.1 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|20090351|ref|NP_616426.1| - 0.00056 19.8 2.5 0.0012 18.7 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|20090351|ref|NP_616426.1| - 0.0012 17.8 0.5 0.021 13.6 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|20090351|ref|NP_616426.1| - 0.0016 18.7 1.2 0.043 14.2 0.1 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|20090351|ref|NP_616426.1| - 0.0034 17.4 0.1 0.16 11.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|20090351|ref|NP_616426.1| - 0.011 14.9 0.5 0.081 12.0 0.1 2.0 2 0 0 2 2 2 0 GMC oxidoreductase FAD_oxidored PF12831.2 gi|20090351|ref|NP_616426.1| - 0.013 14.6 1.0 0.2 10.6 0.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase ApbA PF02558.11 gi|20090351|ref|NP_616426.1| - 0.021 14.2 0.1 0.05 13.0 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|20090351|ref|NP_616426.1| - 0.041 12.9 2.2 0.3 10.1 0.1 2.4 2 1 0 2 2 2 0 Thi4 family FAD_binding_3 PF01494.14 gi|20090351|ref|NP_616426.1| - 0.092 11.7 1.1 0.15 11.0 0.4 1.6 2 0 0 2 2 2 0 FAD binding domain UPF0047 PF01894.12 gi|20090351|ref|NP_616426.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0047 NAD_binding_9 PF13454.1 gi|20090351|ref|NP_616426.1| - 0.48 10.1 2.9 0.96 9.2 0.1 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4 PF00037.22 gi|20090352|ref|NP_616427.1| - 2.4e-13 49.0 16.4 8.6e-07 28.3 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20090352|ref|NP_616427.1| - 6.6e-09 35.5 11.8 1.1e-08 34.7 8.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20090352|ref|NP_616427.1| - 8e-09 35.6 11.2 0.00024 21.2 1.4 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20090352|ref|NP_616427.1| - 2.5e-08 34.1 13.2 8.2e-07 29.3 9.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20090352|ref|NP_616427.1| - 1.4e-07 31.2 15.5 0.00074 19.6 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20090352|ref|NP_616427.1| - 1.5e-07 31.1 24.3 2e-05 24.2 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20090352|ref|NP_616427.1| - 1.5e-07 30.9 15.2 0.00082 19.1 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20090352|ref|NP_616427.1| - 4.9e-07 30.3 10.5 0.0035 18.0 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|20090352|ref|NP_616427.1| - 1.6e-06 27.7 14.7 0.0016 18.2 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20090352|ref|NP_616427.1| - 9.1e-06 25.9 12.7 0.002 18.4 1.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20090352|ref|NP_616427.1| - 1.6e-05 24.8 13.9 0.00016 21.5 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20090352|ref|NP_616427.1| - 3.1e-05 24.3 15.4 0.0075 16.6 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20090352|ref|NP_616427.1| - 0.00022 21.5 19.4 0.024 15.1 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20090352|ref|NP_616427.1| - 0.024 15.2 16.1 0.063 13.8 2.0 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20090352|ref|NP_616427.1| - 0.026 14.8 14.2 0.25 11.7 1.7 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF2279 PF10043.4 gi|20090353|ref|NP_616428.1| - 0.034 14.3 0.0 0.043 14.0 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) Oxidored_q4 PF00507.14 gi|20090354|ref|NP_616429.1| - 1.7e-28 98.4 6.1 2.1e-28 98.1 4.3 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.17 gi|20090355|ref|NP_616430.1| - 3.5e-23 81.6 0.0 4.8e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|20090355|ref|NP_616430.1| - 0.08 11.8 0.0 0.15 11.0 0.0 1.4 2 0 0 2 2 2 0 NgoFVII restriction endonuclease Scytalone_dh PF02982.9 gi|20090355|ref|NP_616430.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Scytalone dehydratase Complex1_30kDa PF00329.14 gi|20090356|ref|NP_616431.1| - 1.5e-35 121.5 0.0 2.8e-35 120.6 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit zf-C2H2_2 PF12756.2 gi|20090356|ref|NP_616431.1| - 0.013 15.6 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) YqbF PF14553.1 gi|20090356|ref|NP_616431.1| - 0.14 11.8 0.6 9.6 5.9 0.0 2.3 2 0 0 2 2 2 0 YqbF, hypothetical protein domain Complex1_49kDa PF00346.14 gi|20090357|ref|NP_616432.1| - 2.6e-72 243.1 0.0 7.3e-51 172.7 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|20090357|ref|NP_616432.1| - 2.2e-07 30.0 0.0 1.8e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|20090358|ref|NP_616433.1| - 2.8e-91 305.8 15.2 3.4e-91 305.5 10.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|20090359|ref|NP_616434.1| - 1.8e-15 55.7 12.9 4.2e-09 35.6 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20090359|ref|NP_616434.1| - 4.6e-12 46.1 7.4 8.2e-12 45.3 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20090359|ref|NP_616434.1| - 4.1e-11 42.9 19.2 9.5e-09 35.4 5.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20090359|ref|NP_616434.1| - 1.1e-10 41.0 17.8 5.5e-08 32.4 7.7 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20090359|ref|NP_616434.1| - 3.2e-10 40.5 5.8 0.00029 21.5 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20090359|ref|NP_616434.1| - 6.4e-09 35.7 4.9 1.2e-08 34.8 3.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20090359|ref|NP_616434.1| - 1.2e-08 34.3 12.1 7.8e-05 22.3 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20090359|ref|NP_616434.1| - 1.6e-07 31.0 8.8 3.3e-07 30.0 6.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20090359|ref|NP_616434.1| - 2.7e-07 30.1 15.9 1.4e-05 24.7 2.5 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20090359|ref|NP_616434.1| - 2.8e-06 27.6 6.3 0.00092 19.5 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20090359|ref|NP_616434.1| - 5.5e-06 26.2 9.8 0.004 17.3 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20090359|ref|NP_616434.1| - 1.1e-05 25.6 8.5 0.0013 18.9 6.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20090359|ref|NP_616434.1| - 1.3e-05 25.7 4.5 0.0012 19.4 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20090359|ref|NP_616434.1| - 0.00014 22.1 20.5 0.006 17.0 2.1 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20090359|ref|NP_616434.1| - 0.002 18.4 10.7 0.0031 17.8 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|20090359|ref|NP_616434.1| - 0.0041 16.9 0.4 0.94 9.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|20090360|ref|NP_616435.1| - 3.7e-14 52.7 13.2 3.7e-14 52.7 9.1 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|20090360|ref|NP_616435.1| - 0.0022 17.9 13.1 0.0022 17.9 9.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) YhhN PF07947.9 gi|20090360|ref|NP_616435.1| - 0.37 10.1 11.3 0.45 9.8 7.9 1.1 1 0 0 1 1 1 0 YhhN-like protein DUF2109 PF09882.4 gi|20090360|ref|NP_616435.1| - 1.7 8.6 12.5 1.7 8.6 7.6 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) Chitin_synth_2 PF03142.10 gi|20090360|ref|NP_616435.1| - 4.4 5.5 8.2 4.8 5.4 5.7 1.0 1 0 0 1 1 1 0 Chitin synthase GPI2 PF06432.6 gi|20090360|ref|NP_616435.1| - 4.5 6.5 6.9 5.8 6.1 4.8 1.2 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase HlyIII PF03006.15 gi|20090360|ref|NP_616435.1| - 4.9 6.4 10.0 5.7 6.2 6.9 1.1 1 0 0 1 1 1 0 Haemolysin-III related Claudin_2 PF13903.1 gi|20090360|ref|NP_616435.1| - 5.3 6.6 15.2 7.2 6.2 10.5 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Oxidored_q3 PF00499.15 gi|20090361|ref|NP_616436.1| - 8.6e-05 22.3 3.0 0.00015 21.5 2.0 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3366 PF11846.3 gi|20090361|ref|NP_616436.1| - 0.049 13.4 0.0 0.056 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) PepSY_TM PF03929.11 gi|20090361|ref|NP_616436.1| - 0.12 12.8 4.7 0.17 12.3 0.2 2.4 2 1 0 2 2 2 0 PepSY-associated TM helix PepSY_TM_3 PF13706.1 gi|20090361|ref|NP_616436.1| - 5.2 6.5 6.8 0.33 10.4 1.1 1.7 2 0 0 2 2 2 0 PepSY-associated TM helix Oxidored_q2 PF00420.19 gi|20090362|ref|NP_616437.1| - 2.1e-26 91.3 6.3 2.4e-26 91.1 4.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1_C PF01010.14 gi|20090362|ref|NP_616437.1| - 0.1 12.0 1.8 0.12 11.8 1.2 1.0 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus BMC PF00936.14 gi|20090362|ref|NP_616437.1| - 0.11 12.2 0.1 0.14 11.8 0.1 1.1 1 0 0 1 1 1 0 BMC domain Oxidored_q1 PF00361.15 gi|20090363|ref|NP_616438.1| - 1.4e-73 247.5 16.4 1.4e-73 247.5 11.4 3.5 4 2 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|20090363|ref|NP_616438.1| - 2.2e-12 46.3 1.9 2.2e-12 46.3 1.3 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|20090363|ref|NP_616438.1| - 0.014 14.9 4.8 0.086 12.3 3.3 2.3 1 1 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q1 PF00361.15 gi|20090364|ref|NP_616439.1| - 2.9e-64 216.9 26.4 8.5e-64 215.4 18.3 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|20090364|ref|NP_616439.1| - 0.0003 20.6 1.0 0.0003 20.6 0.7 4.6 4 3 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus 4HB_MCP_1 PF12729.2 gi|20090364|ref|NP_616439.1| - 0.11 11.8 0.3 0.4 10.0 0.2 2.0 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Oxidored_q1 PF00361.15 gi|20090365|ref|NP_616440.1| - 1.9e-64 217.5 17.0 1.9e-64 217.5 11.8 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|20090365|ref|NP_616440.1| - 0.36 10.4 6.2 0.057 12.9 0.9 2.3 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FpoO PF10621.4 gi|20090366|ref|NP_616441.1| - 1.2e-69 231.9 2.7 1.3e-69 231.7 1.9 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO DUF4428 PF14471.1 gi|20090366|ref|NP_616441.1| - 0.013 15.1 10.5 0.043 13.5 1.2 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF4428) FYVE PF01363.16 gi|20090366|ref|NP_616441.1| - 0.043 13.6 1.4 1.3 8.9 1.0 2.4 1 1 0 1 1 1 0 FYVE zinc finger DUF2039 PF10217.4 gi|20090366|ref|NP_616441.1| - 0.065 13.2 2.9 0.22 11.5 0.5 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) zf-C3HC4_3 PF13920.1 gi|20090366|ref|NP_616441.1| - 4.4 7.0 7.0 2 8.1 0.7 2.8 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) NosD PF05048.8 gi|20090367|ref|NP_616442.1| - 8.9e-53 178.8 156.2 1.5e-13 50.4 5.7 5.3 2 2 3 5 5 5 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20090367|ref|NP_616442.1| - 8.5e-39 132.8 170.8 8.2e-14 51.6 14.4 6.8 3 2 3 6 6 6 5 Right handed beta helix region Spt4 PF06093.8 gi|20090367|ref|NP_616442.1| - 0.047 13.5 0.9 0.6 10.0 0.1 2.9 3 0 0 3 3 3 0 Spt4/RpoE2 zinc finger FpoO PF10621.4 gi|20090368|ref|NP_616443.1| - 3.9e-35 120.5 0.5 4.7e-35 120.2 0.3 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO DUF4428 PF14471.1 gi|20090368|ref|NP_616443.1| - 0.004 16.8 0.2 0.046 13.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) LVIVD PF08309.6 gi|20090369|ref|NP_616444.1| - 1.5e-102 334.3 55.7 4.8e-19 67.0 2.0 7.8 5 2 2 7 7 7 7 LVIVD repeat LGFP PF08310.6 gi|20090369|ref|NP_616444.1| - 7.2e-34 115.2 18.4 3.2e-12 45.8 0.0 9.9 9 2 0 9 9 9 7 LGFP repeat PKD PF00801.15 gi|20090369|ref|NP_616444.1| - 1.4e-09 37.5 5.7 1.4e-09 37.5 3.9 5.5 6 0 0 6 6 6 1 PKD domain Reprolysin_3 PF13582.1 gi|20090369|ref|NP_616444.1| - 0.0001 22.8 1.3 0.006 17.1 0.1 3.5 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like EF-hand_1 PF00036.27 gi|20090369|ref|NP_616444.1| - 0.0013 17.9 3.4 0.7 9.3 1.0 3.4 2 0 0 2 2 2 2 EF hand CPSF_A PF03178.10 gi|20090369|ref|NP_616444.1| - 0.017 14.2 0.2 0.22 10.5 0.0 2.5 2 2 0 2 2 2 0 CPSF A subunit region EF-hand_7 PF13499.1 gi|20090369|ref|NP_616444.1| - 0.021 14.9 0.2 0.073 13.2 0.2 2.0 1 0 0 1 1 1 0 EF-hand domain pair PQQ_3 PF13570.1 gi|20090369|ref|NP_616444.1| - 0.29 11.4 48.2 0.059 13.6 0.7 7.6 7 0 0 7 7 7 0 PQQ-like domain EF-hand_6 PF13405.1 gi|20090369|ref|NP_616444.1| - 0.29 11.1 2.5 3.5 7.7 0.4 3.1 2 0 0 2 2 2 0 EF-hand domain EF-hand_8 PF13833.1 gi|20090369|ref|NP_616444.1| - 1.3 8.6 3.9 15 5.3 0.0 2.7 2 0 0 2 2 2 0 EF-hand domain pair NTP_transf_2 PF01909.18 gi|20090371|ref|NP_616446.1| - 5.2e-11 42.7 0.1 9.3e-11 41.9 0.1 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.2 gi|20090371|ref|NP_616446.1| - 0.095 12.2 0.0 0.24 10.8 0.0 1.7 1 1 0 1 1 1 0 Adenylate cyclase NT domain Peptidase_C1 PF00112.18 gi|20090372|ref|NP_616447.1| - 3.6e-25 89.1 0.2 5.5e-25 88.5 0.1 1.2 1 0 0 1 1 1 1 Papain family cysteine protease Arch_fla_DE PF04659.8 gi|20090372|ref|NP_616447.1| - 0.0011 18.7 0.0 0.0067 16.2 0.0 2.2 2 0 0 2 2 2 1 Archaeal flagella protein Peptidase_C1_2 PF03051.10 gi|20090372|ref|NP_616447.1| - 0.0013 17.3 0.2 0.11 10.9 0.1 2.2 2 0 0 2 2 2 2 Peptidase C1-like family EF-hand_1 PF00036.27 gi|20090372|ref|NP_616447.1| - 0.0026 16.9 4.4 0.69 9.3 0.2 2.9 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.1 gi|20090372|ref|NP_616447.1| - 0.016 15.0 3.3 0.84 9.6 0.3 2.8 2 0 0 2 2 2 0 EF-hand domain EF-hand_8 PF13833.1 gi|20090372|ref|NP_616447.1| - 0.47 10.0 5.8 1.9 8.1 0.4 2.5 2 0 0 2 2 2 0 EF-hand domain pair DUF217 PF02697.9 gi|20090373|ref|NP_616448.1| - 2.7e-19 69.1 2.1 3.1e-19 69.0 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 PA28_beta PF02252.13 gi|20090373|ref|NP_616448.1| - 0.049 13.0 0.0 0.054 12.9 0.0 1.1 1 0 0 1 1 1 0 Proteasome activator pa28 beta subunit RHH_3 PF12651.2 gi|20090373|ref|NP_616448.1| - 0.098 12.3 0.6 0.3 10.8 0.2 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|20090373|ref|NP_616448.1| - 0.22 11.4 1.5 0.29 11.0 0.2 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|20090374|ref|NP_616449.1| - 8.5e-16 58.3 0.1 1e-15 58.1 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF536 PF04394.9 gi|20090374|ref|NP_616449.1| - 0.024 14.3 0.5 0.055 13.1 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF536 CPSase_L_D3 PF02787.14 gi|20090374|ref|NP_616449.1| - 0.046 13.4 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MFS_1 PF07690.11 gi|20090375|ref|NP_616450.1| - 1.4e-48 165.4 26.9 1.4e-48 165.4 18.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|20090375|ref|NP_616450.1| - 4.7e-05 21.6 13.2 0.0052 14.9 2.2 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|20090375|ref|NP_616450.1| - 0.0018 16.7 5.0 0.0018 16.7 3.5 3.1 2 1 1 3 3 3 2 MFS/sugar transport protein TRI12 PF06609.8 gi|20090375|ref|NP_616450.1| - 0.0036 15.5 1.0 0.0036 15.5 0.7 2.3 2 1 1 3 3 3 1 Fungal trichothecene efflux pump (TRI12) Pentapeptide PF00805.17 gi|20090375|ref|NP_616450.1| - 0.0063 15.7 0.0 0.012 14.8 0.0 1.5 1 0 0 1 1 1 1 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|20090375|ref|NP_616450.1| - 0.023 14.4 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) NosD PF05048.8 gi|20090376|ref|NP_616451.1| - 5e-66 222.2 54.2 3e-58 196.7 24.3 2.7 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20090376|ref|NP_616451.1| - 1.1e-19 70.7 76.8 5.9e-14 52.1 17.2 4.1 2 1 2 4 4 4 3 Right handed beta helix region SNF PF00209.13 gi|20090377|ref|NP_616452.1| - 1.6e-108 363.4 39.6 1.5e-71 241.4 13.5 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family WD40 PF00400.27 gi|20090378|ref|NP_616453.1| - 3.2e-29 99.7 9.4 0.016 15.0 0.0 8.3 8 0 0 8 8 8 8 WD domain, G-beta repeat PQQ_3 PF13570.1 gi|20090378|ref|NP_616453.1| - 2e-20 72.3 21.7 0.0001 22.4 0.1 7.9 8 1 0 8 8 8 5 PQQ-like domain PQQ_2 PF13360.1 gi|20090378|ref|NP_616453.1| - 2.4e-19 69.7 7.7 5.6e-08 32.5 0.2 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|20090378|ref|NP_616453.1| - 1.6e-16 58.9 10.4 0.014 14.9 0.0 6.8 6 0 0 6 6 6 5 PQQ enzyme repeat eIF2A PF08662.6 gi|20090378|ref|NP_616453.1| - 0.00077 19.2 3.5 0.31 10.7 0.1 3.4 1 1 2 3 3 3 2 Eukaryotic translation initiation factor eIF2A Gmad1 PF10647.4 gi|20090378|ref|NP_616453.1| - 0.021 14.2 0.8 18 4.6 0.0 3.4 2 1 1 3 3 3 0 Lipoprotein LpqB beta-propeller domain RAB3GAP2_N PF14655.1 gi|20090378|ref|NP_616453.1| - 0.06 12.3 0.1 28 3.5 0.0 3.5 2 1 2 4 4 4 0 Rab3 GTPase-activating protein regulatory subunit N-terminus HPS3_N PF14761.1 gi|20090378|ref|NP_616453.1| - 0.1 12.0 0.0 13 5.0 0.0 2.4 2 0 0 2 2 2 0 Hermansky-Pudlak syndrome 3 DUF3042 PF11240.3 gi|20090378|ref|NP_616453.1| - 0.16 11.7 0.1 2.5 7.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) Cytochrom_D1 PF02239.11 gi|20090378|ref|NP_616453.1| - 0.33 9.1 5.4 1.6 6.9 0.3 3.4 2 2 3 5 5 5 0 Cytochrome D1 heme domain PPC PF04151.10 gi|20090378|ref|NP_616453.1| - 0.95 10.4 17.4 0.81 10.6 0.4 5.1 1 1 2 3 3 3 0 Bacterial pre-peptidase C-terminal domain Gram_pos_anchor PF00746.16 gi|20090378|ref|NP_616453.1| - 1.7 8.5 5.0 0.78 9.6 0.2 2.8 2 0 0 2 2 2 0 Gram positive anchor Radical_SAM PF04055.16 gi|20090379|ref|NP_616454.1| - 1.4e-21 77.3 0.1 1.7e-21 77.1 0.1 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20090379|ref|NP_616454.1| - 1.1e-07 31.8 0.0 2.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20090379|ref|NP_616454.1| - 4.6e-05 23.5 0.0 0.00013 22.1 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Ribosomal_L7Ae PF01248.21 gi|20090380|ref|NP_616455.1| - 4.4e-26 90.2 0.8 5.2e-26 90.0 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|20090380|ref|NP_616455.1| - 0.034 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|20090380|ref|NP_616455.1| - 0.088 13.0 0.1 0.11 12.7 0.0 1.3 1 1 0 1 1 1 0 eRF1 domain 3 Enolase_N PF03952.11 gi|20090380|ref|NP_616455.1| - 0.18 11.7 1.0 0.38 10.6 0.7 1.5 1 1 0 1 1 1 0 Enolase, N-terminal domain Ribosomal_S28e PF01200.13 gi|20090381|ref|NP_616456.1| - 2.1e-28 97.8 0.5 2.3e-28 97.7 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|20090382|ref|NP_616457.1| - 1.7e-19 69.4 0.9 1.8e-19 69.3 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.8 gi|20090382|ref|NP_616457.1| - 0.00082 19.1 1.9 0.001 18.8 1.4 1.1 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|20090382|ref|NP_616457.1| - 0.0018 17.8 4.5 0.0025 17.4 3.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|20090382|ref|NP_616457.1| - 0.12 12.5 1.6 0.31 11.2 1.1 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain DUF581 PF04570.9 gi|20090382|ref|NP_616457.1| - 0.47 9.7 3.7 0.79 9.0 2.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF581) NDK PF00334.14 gi|20090383|ref|NP_616458.1| - 2e-55 186.2 0.0 2.3e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.22 gi|20090384|ref|NP_616459.1| - 9.4e-32 109.9 0.1 1.2e-30 106.3 0.1 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|20090384|ref|NP_616459.1| - 1.6e-23 82.6 0.5 1.6e-23 82.6 0.4 2.8 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|20090384|ref|NP_616459.1| - 2.8e-15 55.7 3.6 1.1e-14 53.8 2.5 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|20090384|ref|NP_616459.1| - 1.7e-14 53.6 6.0 2.8e-11 43.3 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|20090384|ref|NP_616459.1| - 1.5e-07 31.4 0.0 3.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|20090384|ref|NP_616459.1| - 0.002 18.5 0.0 0.0066 16.9 0.0 1.9 2 0 0 2 2 2 1 Miro-like protein ATP_bind_1 PF03029.12 gi|20090384|ref|NP_616459.1| - 0.0055 16.2 0.0 0.018 14.6 0.0 1.8 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|20090384|ref|NP_616459.1| - 0.01 15.3 0.0 0.22 11.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|20090384|ref|NP_616459.1| - 0.038 13.8 0.1 0.99 9.2 0.0 2.4 2 0 0 2 2 2 0 Dynamin family MobB PF03205.9 gi|20090384|ref|NP_616459.1| - 0.046 13.4 0.4 0.17 11.6 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|20090384|ref|NP_616459.1| - 0.062 12.7 0.1 8.6 5.7 0.0 2.7 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S6e PF01092.14 gi|20090385|ref|NP_616460.1| - 1.6e-35 121.5 0.4 1.8e-35 121.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Ion_trans_2 PF07885.11 gi|20090386|ref|NP_616461.1| - 1.2e-11 44.1 9.2 1.2e-11 44.1 6.4 1.7 1 1 1 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|20090386|ref|NP_616461.1| - 0.002 17.3 6.4 0.0027 16.9 4.4 1.2 1 0 0 1 1 1 1 Ion transport protein TcpE PF12648.2 gi|20090386|ref|NP_616461.1| - 1.4 9.1 9.4 0.11 12.6 1.3 2.0 1 1 1 2 2 2 0 TcpE family DUF2975 PF11188.3 gi|20090386|ref|NP_616461.1| - 9.8 5.8 11.5 1 9.0 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) DUF2092 PF09865.4 gi|20090387|ref|NP_616462.1| - 4.8e-06 25.7 0.1 0.04 12.9 0.0 2.1 2 0 0 2 2 2 2 Predicted periplasmic protein (DUF2092) LolA PF03548.10 gi|20090387|ref|NP_616462.1| - 0.11 12.1 0.1 0.28 10.7 0.1 1.8 1 1 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA HTH_20 PF12840.2 gi|20090388|ref|NP_616463.1| - 1e-14 54.0 0.0 2.5e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20090388|ref|NP_616463.1| - 8.7e-13 47.4 1.1 2e-08 33.4 0.2 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|20090388|ref|NP_616463.1| - 1.5e-07 30.9 0.7 0.00031 20.3 0.1 2.4 2 0 0 2 2 2 2 HTH domain HTH_5 PF01022.15 gi|20090388|ref|NP_616463.1| - 2.3e-06 27.1 0.0 0.021 14.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|20090388|ref|NP_616463.1| - 1.7e-05 24.4 0.0 0.01 15.4 0.0 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|20090388|ref|NP_616463.1| - 1.8e-05 24.3 0.2 0.0042 16.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|20090388|ref|NP_616463.1| - 5.3e-05 22.8 0.1 0.044 13.5 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_28 PF13518.1 gi|20090388|ref|NP_616463.1| - 0.00026 20.9 2.7 0.0029 17.5 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20090388|ref|NP_616463.1| - 0.00039 20.1 0.0 0.00096 18.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TetR_N PF00440.18 gi|20090388|ref|NP_616463.1| - 0.0004 19.9 0.2 0.1 12.2 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_IS630 PF01710.11 gi|20090388|ref|NP_616463.1| - 0.00041 20.0 0.1 0.015 14.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_IclR PF09339.5 gi|20090388|ref|NP_616463.1| - 0.0013 18.2 0.0 0.75 9.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|20090388|ref|NP_616463.1| - 0.0017 18.6 0.0 0.31 11.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|20090388|ref|NP_616463.1| - 0.0046 17.0 0.3 0.044 13.9 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain FaeA PF04703.7 gi|20090388|ref|NP_616463.1| - 0.007 16.5 1.5 1.7 8.8 0.4 2.3 2 0 0 2 2 2 1 FaeA-like protein DUF2250 PF10007.4 gi|20090388|ref|NP_616463.1| - 0.0077 16.1 0.0 0.021 14.7 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) RepL PF05732.6 gi|20090388|ref|NP_616463.1| - 0.013 14.6 0.1 0.025 13.8 0.0 1.5 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.14 gi|20090388|ref|NP_616463.1| - 0.02 14.7 0.0 0.052 13.5 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|20090388|ref|NP_616463.1| - 0.024 14.2 0.3 0.098 12.3 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Penicillinase_R PF03965.11 gi|20090388|ref|NP_616463.1| - 0.027 14.5 0.1 0.087 12.9 0.0 1.9 1 1 1 2 2 2 0 Penicillinase repressor HTH_38 PF13936.1 gi|20090388|ref|NP_616463.1| - 0.054 13.0 0.2 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|20090388|ref|NP_616463.1| - 0.056 13.0 0.1 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PaaX PF07848.7 gi|20090388|ref|NP_616463.1| - 0.064 13.2 0.1 2.7 8.0 0.0 2.3 2 0 0 2 2 2 0 PaaX-like protein Mrr_N PF14338.1 gi|20090388|ref|NP_616463.1| - 0.088 12.8 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain GntR PF00392.16 gi|20090388|ref|NP_616463.1| - 0.097 12.1 0.0 2.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF2639 PF11121.3 gi|20090388|ref|NP_616463.1| - 0.11 12.0 0.3 0.81 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2639) HTH_29 PF13551.1 gi|20090388|ref|NP_616463.1| - 0.12 12.5 0.4 0.79 9.8 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn helix DPPIV_N PF00930.16 gi|20090389|ref|NP_616464.1| - 1.5e-12 46.7 5.7 0.00092 17.8 0.0 6.0 2 1 3 5 5 5 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.7 gi|20090389|ref|NP_616464.1| - 4.8e-12 45.2 25.7 0.13 11.9 0.0 8.2 7 1 1 8 8 8 6 WD40-like Beta Propeller Repeat Inh PF02974.9 gi|20090389|ref|NP_616464.1| - 0.002 17.6 1.6 29 4.3 0.0 5.9 6 2 2 8 8 8 0 Protease inhibitor Inh CarboxypepD_reg PF13620.1 gi|20090389|ref|NP_616464.1| - 0.017 15.1 0.0 0.049 13.6 0.0 1.7 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Coatomer_WDAD PF04053.9 gi|20090389|ref|NP_616464.1| - 0.039 12.7 0.2 0.15 10.7 0.2 1.9 2 0 0 2 2 2 0 Coatomer WD associated region PEGA PF08308.6 gi|20090389|ref|NP_616464.1| - 0.11 12.2 0.0 0.43 10.3 0.0 2.0 2 0 0 2 2 2 0 PEGA domain DUF4198 PF10670.4 gi|20090389|ref|NP_616464.1| - 0.14 12.1 0.0 1.9 8.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) HTH_20 PF12840.2 gi|20090390|ref|NP_616465.1| - 1.3e-11 44.1 0.0 0.00016 21.3 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20090390|ref|NP_616465.1| - 6.8e-11 41.3 0.5 2.6e-08 33.1 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20090390|ref|NP_616465.1| - 4e-05 23.1 0.0 0.19 11.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20090390|ref|NP_616465.1| - 0.0001 21.9 0.1 0.01 15.4 0.0 2.5 2 0 0 2 2 2 1 HTH domain FaeA PF04703.7 gi|20090390|ref|NP_616465.1| - 0.0011 19.0 0.6 0.9 9.7 0.2 2.3 2 0 0 2 2 2 2 FaeA-like protein TrmB PF01978.14 gi|20090390|ref|NP_616465.1| - 0.0015 18.1 0.0 0.055 13.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB TetR_N PF00440.18 gi|20090390|ref|NP_616465.1| - 0.0026 17.3 0.2 0.83 9.3 0.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_IS630 PF01710.11 gi|20090390|ref|NP_616465.1| - 0.0031 17.1 0.0 0.075 12.7 0.0 2.3 1 1 1 2 2 2 1 Transposase Fe_dep_repress PF01325.14 gi|20090390|ref|NP_616465.1| - 0.013 15.4 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|20090390|ref|NP_616465.1| - 0.013 15.1 0.0 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_36 PF13730.1 gi|20090390|ref|NP_616465.1| - 0.015 15.4 0.1 0.58 10.3 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|20090390|ref|NP_616465.1| - 0.015 15.1 0.0 0.042 13.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|20090390|ref|NP_616465.1| - 0.034 14.4 0.0 2.2 8.6 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|20090390|ref|NP_616465.1| - 0.035 13.9 0.1 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|20090390|ref|NP_616465.1| - 0.068 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|20090390|ref|NP_616465.1| - 0.073 12.7 0.0 0.7 9.6 0.0 2.2 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.11 gi|20090390|ref|NP_616465.1| - 0.12 12.5 0.0 0.29 11.2 0.0 1.7 1 1 0 1 1 1 0 Penicillinase repressor PPC PF04151.10 gi|20090391|ref|NP_616466.1| - 0.036 15.0 0.4 0.056 14.4 0.3 1.3 1 0 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain IstB_IS21 PF01695.12 gi|20090392|ref|NP_616467.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20090392|ref|NP_616467.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20090392|ref|NP_616467.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20090392|ref|NP_616467.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20090392|ref|NP_616467.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20090392|ref|NP_616467.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20090392|ref|NP_616467.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20090392|ref|NP_616467.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20090392|ref|NP_616467.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20090392|ref|NP_616467.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20090392|ref|NP_616467.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20090392|ref|NP_616467.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20090392|ref|NP_616467.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20090392|ref|NP_616467.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20090392|ref|NP_616467.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20090392|ref|NP_616467.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20090392|ref|NP_616467.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20090392|ref|NP_616467.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20090392|ref|NP_616467.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20090392|ref|NP_616467.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20090392|ref|NP_616467.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20090392|ref|NP_616467.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20090392|ref|NP_616467.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20090392|ref|NP_616467.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20090392|ref|NP_616467.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20090392|ref|NP_616467.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20090392|ref|NP_616467.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20090392|ref|NP_616467.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20090393|ref|NP_616468.1| - 8.7e-20 71.0 0.0 1.6e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20090393|ref|NP_616468.1| - 8.1e-07 28.5 0.1 2e-06 27.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20090393|ref|NP_616468.1| - 1.4e-05 24.8 0.2 3.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.1 gi|20090393|ref|NP_616468.1| - 2.2e-05 23.8 0.0 6.7e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|20090393|ref|NP_616468.1| - 2.6e-05 23.7 0.5 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20090393|ref|NP_616468.1| - 0.0087 16.1 0.0 0.23 11.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20090393|ref|NP_616468.1| - 0.01 15.4 0.2 0.04 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Sigma70_r4 PF04545.11 gi|20090393|ref|NP_616468.1| - 0.012 14.8 0.1 0.03 13.6 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20090393|ref|NP_616468.1| - 0.018 14.5 0.0 0.054 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.17 gi|20090393|ref|NP_616468.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20090393|ref|NP_616468.1| - 0.021 14.9 0.0 0.078 13.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20090393|ref|NP_616468.1| - 0.025 14.5 0.2 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20090393|ref|NP_616468.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20090393|ref|NP_616468.1| - 0.071 12.5 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20090393|ref|NP_616468.1| - 0.087 12.3 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sugar_transport PF06800.7 gi|20090394|ref|NP_616469.1| - 0.0017 17.4 2.6 0.0019 17.3 0.2 2.1 2 1 0 2 2 2 1 Sugar transport protein DUF4010 PF13194.1 gi|20090394|ref|NP_616469.1| - 0.044 13.0 4.7 0.29 10.4 0.0 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4010) DUF2723 PF11028.3 gi|20090394|ref|NP_616469.1| - 0.26 10.7 0.1 0.26 10.7 0.1 2.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2723) LSR PF05624.9 gi|20090394|ref|NP_616469.1| - 0.48 10.1 0.1 0.48 10.1 0.1 3.1 5 0 0 5 5 5 0 Lipolysis stimulated receptor (LSR) EcsB PF05975.7 gi|20090394|ref|NP_616469.1| - 0.81 8.0 19.1 0.32 9.4 7.2 2.0 2 0 0 2 2 2 0 Bacterial ABC transporter protein EcsB DUF4131 PF13567.1 gi|20090394|ref|NP_616469.1| - 1.1 8.6 8.9 8.5 5.7 0.0 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) TMEM220 PF15071.1 gi|20090394|ref|NP_616469.1| - 1.7 9.1 5.7 49 4.4 0.0 3.0 2 1 0 2 2 2 0 Transmembrane family 220, helix 2TM PF13239.1 gi|20090394|ref|NP_616469.1| - 6.2 6.9 21.6 0.2 11.7 0.5 3.2 2 1 1 3 3 3 0 2TM domain PalH PF08733.5 gi|20090394|ref|NP_616469.1| - 6.9 5.4 12.3 2.8 6.6 6.9 1.4 1 1 0 1 1 1 0 PalH/RIM21 ABC_tran PF00005.22 gi|20090395|ref|NP_616470.1| - 7.7e-27 94.2 0.0 1.4e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090395|ref|NP_616470.1| - 7.1e-18 65.5 0.0 8.9e-16 58.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20090395|ref|NP_616470.1| - 0.00014 21.4 0.2 0.19 11.1 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|20090395|ref|NP_616470.1| - 0.00094 19.5 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|20090395|ref|NP_616470.1| - 0.0042 17.2 0.8 0.049 13.8 0.1 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|20090395|ref|NP_616470.1| - 0.011 15.2 0.1 0.023 14.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|20090395|ref|NP_616470.1| - 0.022 14.3 0.2 0.1 12.1 0.0 2.1 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|20090395|ref|NP_616470.1| - 0.022 14.4 0.5 0.065 12.9 0.0 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|20090395|ref|NP_616470.1| - 0.027 13.9 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain T2SE PF00437.15 gi|20090395|ref|NP_616470.1| - 0.039 12.8 0.3 1.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_15 PF13175.1 gi|20090395|ref|NP_616470.1| - 0.043 12.8 0.0 1.4 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|20090395|ref|NP_616470.1| - 0.055 13.6 0.1 0.25 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|20090395|ref|NP_616470.1| - 0.076 12.4 0.0 1.9 7.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF258 PF03193.11 gi|20090395|ref|NP_616470.1| - 0.081 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|20090395|ref|NP_616470.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.4 gi|20090396|ref|NP_616471.1| - 9e-29 99.3 0.5 3.9e-06 26.8 0.0 4.6 4 1 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|20090396|ref|NP_616471.1| - 9.4e-09 35.2 4.8 0.00035 20.5 0.1 4.7 4 1 0 4 4 4 2 CARDB DUF1034 PF06280.7 gi|20090396|ref|NP_616471.1| - 1.1e-05 25.7 1.0 1.3 9.4 0.0 5.3 3 2 3 6 6 6 1 Fn3-like domain (DUF1034) DUF4625 PF15418.1 gi|20090396|ref|NP_616471.1| - 8.5e-05 22.6 0.0 2.4 8.2 0.0 4.0 3 2 1 4 4 4 2 Domain of unknown function (DUF4625) DUF11 PF01345.13 gi|20090396|ref|NP_616471.1| - 0.00012 22.0 0.1 0.34 11.0 0.0 3.9 3 1 0 4 4 4 1 Domain of unknown function DUF11 Wzt_C PF14524.1 gi|20090396|ref|NP_616471.1| - 0.00015 21.4 0.1 0.0055 16.3 0.0 3.2 3 1 1 4 4 4 1 Wzt C-terminal domain Fn3-like PF14310.1 gi|20090396|ref|NP_616471.1| - 0.0006 19.6 0.1 0.41 10.6 0.0 4.7 4 1 1 5 5 5 1 Fibronectin type III-like domain Qn_am_d_aIII PF09099.5 gi|20090396|ref|NP_616471.1| - 0.0099 16.1 0.3 6.3 7.1 0.0 3.8 3 0 0 3 3 3 1 Quinohemoprotein amine dehydrogenase, alpha subunit domain III AP3B1_C PF14796.1 gi|20090396|ref|NP_616471.1| - 0.014 15.1 0.1 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal Transglut_C PF00927.17 gi|20090396|ref|NP_616471.1| - 0.023 14.7 0.0 0.53 10.3 0.0 2.8 2 1 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain E1_DerP2_DerF2 PF02221.10 gi|20090396|ref|NP_616471.1| - 0.033 14.4 0.1 24 5.1 0.0 3.7 3 1 1 4 4 4 0 ML domain DUF2271 PF10029.4 gi|20090396|ref|NP_616471.1| - 0.077 12.4 0.0 3.2 7.2 0.0 2.8 3 0 0 3 3 3 0 Predicted periplasmic protein (DUF2271) ABC2_membrane_2 PF12679.2 gi|20090397|ref|NP_616472.1| - 2.9e-35 121.4 22.2 3.3e-35 121.2 15.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090397|ref|NP_616472.1| - 1.4e-14 53.8 21.7 1.4e-14 53.8 15.0 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090397|ref|NP_616472.1| - 8.3e-11 41.5 21.5 8.3e-11 41.5 14.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20090397|ref|NP_616472.1| - 0.0012 18.1 16.9 0.0012 18.1 11.7 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein DUF3353 PF11833.3 gi|20090397|ref|NP_616472.1| - 0.57 9.6 8.8 1 8.7 6.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF2721 PF11026.3 gi|20090397|ref|NP_616472.1| - 2 8.0 16.6 5.1 6.7 0.2 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) PsbT PF01405.12 gi|20090397|ref|NP_616472.1| - 5.6 6.6 9.6 11 5.6 0.7 3.6 3 0 0 3 3 3 0 Photosystem II reaction centre T protein ABC2_membrane_2 PF12679.2 gi|20090398|ref|NP_616473.1| - 1e-34 119.7 13.1 3.2e-34 118.0 9.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090398|ref|NP_616473.1| - 8.3e-13 48.0 27.3 8.3e-13 48.0 18.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090398|ref|NP_616473.1| - 8.7e-06 24.9 26.2 8.7e-06 24.9 18.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20090398|ref|NP_616473.1| - 0.0018 17.6 27.7 0.0023 17.2 16.5 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|20090398|ref|NP_616473.1| - 0.16 11.1 24.8 0.004 16.3 12.4 1.9 3 0 0 3 3 3 0 ABC-2 type transporter DPPIV_N PF00930.16 gi|20090399|ref|NP_616474.1| - 8.1e-13 47.6 5.2 0.0029 16.2 0.0 6.4 1 1 4 5 5 5 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.7 gi|20090399|ref|NP_616474.1| - 3.4e-09 36.1 20.3 0.21 11.2 0.0 7.4 8 0 0 8 8 8 6 WD40-like Beta Propeller Repeat Proteasome_A_N PF10584.4 gi|20090399|ref|NP_616474.1| - 0.0023 17.2 0.6 27 4.1 0.0 4.7 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Pectate_lyase22 PF14583.1 gi|20090399|ref|NP_616474.1| - 0.0048 15.4 0.1 0.8 8.0 0.0 2.9 1 1 1 3 3 3 2 Oligogalacturonate lyase Polysacc_synt_4 PF04669.8 gi|20090399|ref|NP_616474.1| - 0.17 11.2 0.0 0.4 10.0 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide biosynthesis PD40 PF07676.7 gi|20090401|ref|NP_616476.1| - 6.8e-10 38.3 8.2 0.086 12.5 0.0 7.0 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat SecD-TM1 PF13721.1 gi|20090401|ref|NP_616476.1| - 0.078 13.2 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 SecD export protein N-terminal TM region ABC2_membrane_2 PF12679.2 gi|20090402|ref|NP_616477.1| - 6.6e-28 97.3 17.4 4.9e-26 91.2 12.1 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090402|ref|NP_616477.1| - 1.8e-12 46.9 28.7 2.4e-12 46.5 19.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090402|ref|NP_616477.1| - 5.1e-11 42.1 26.8 5.1e-11 42.1 18.6 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20090402|ref|NP_616477.1| - 7.2e-05 22.1 17.0 7.2e-05 22.1 11.8 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein BCLP PF12304.3 gi|20090402|ref|NP_616477.1| - 0.00024 20.5 1.2 0.00055 19.4 0.8 1.7 1 1 0 1 1 1 1 Beta-casein like protein ABC2_membrane PF01061.19 gi|20090402|ref|NP_616477.1| - 0.00052 19.2 21.6 0.00052 19.2 15.0 2.6 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|20090403|ref|NP_616478.1| - 1.9e-31 108.9 21.6 2.5e-31 108.5 14.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090403|ref|NP_616478.1| - 2.2e-09 36.7 25.7 2.2e-09 36.7 17.8 1.4 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090403|ref|NP_616478.1| - 8.6e-08 31.6 37.3 2.1e-07 30.3 25.1 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20090403|ref|NP_616478.1| - 3.7e-06 26.3 18.6 3.7e-06 26.3 12.9 2.4 3 0 0 3 3 3 1 ABC-2 family transporter protein Cytochrome-c551 PF10643.4 gi|20090403|ref|NP_616478.1| - 6.1 6.0 9.9 9 5.5 6.9 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 ABC2_membrane_2 PF12679.2 gi|20090404|ref|NP_616479.1| - 8.7e-32 110.0 22.4 1e-31 109.8 15.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090404|ref|NP_616479.1| - 3.5e-09 36.1 37.5 6.1e-09 35.3 25.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090404|ref|NP_616479.1| - 9.8e-08 31.4 26.2 2.6e-07 30.0 18.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20090404|ref|NP_616479.1| - 1.3 8.2 32.8 0.13 11.5 18.2 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20090405|ref|NP_616480.1| - 2e-35 121.9 18.3 3.2e-35 121.3 12.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090405|ref|NP_616480.1| - 3e-14 52.7 39.0 8e-14 51.3 19.5 2.1 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20090405|ref|NP_616480.1| - 0.00017 20.7 33.3 0.00017 20.7 23.1 2.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|20090405|ref|NP_616480.1| - 0.0013 17.9 27.0 0.002 17.3 13.8 2.2 2 0 0 2 2 2 2 ABC-2 type transporter Fig1 PF12351.3 gi|20090405|ref|NP_616480.1| - 0.017 15.0 15.6 0.037 13.9 3.9 2.9 2 1 1 3 3 3 0 Ca2+ regulator and membrane fusion protein Fig1 NPCC PF08058.6 gi|20090405|ref|NP_616480.1| - 0.15 11.9 2.8 0.11 12.4 0.2 2.1 1 1 1 2 2 2 0 Nuclear pore complex component ABC2_membrane_5 PF13346.1 gi|20090405|ref|NP_616480.1| - 0.37 10.0 41.0 0.012 14.9 19.5 2.9 1 1 1 2 2 2 0 ABC-2 family transporter protein eIF2A PF08662.6 gi|20090406|ref|NP_616481.1| - 2.9e-06 27.1 1.7 0.012 15.3 0.1 3.9 2 1 2 4 4 4 3 Eukaryotic translation initiation factor eIF2A PD40 PF07676.7 gi|20090406|ref|NP_616481.1| - 4.6e-06 26.1 2.0 0.009 15.6 0.0 4.5 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|20090406|ref|NP_616481.1| - 1.4e-05 23.8 4.3 0.016 13.8 0.3 5.2 2 2 1 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region WD40 PF00400.27 gi|20090406|ref|NP_616481.1| - 0.021 14.6 0.0 9.3 6.3 0.0 3.5 3 0 0 3 3 3 0 WD domain, G-beta repeat Unstab_antitox PF09720.5 gi|20090407|ref|NP_616482.1| - 0.098 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative addiction module component SSPI PF14098.1 gi|20090407|ref|NP_616482.1| - 0.14 12.1 1.2 13 5.7 0.0 2.6 3 0 0 3 3 3 0 Small, acid-soluble spore protein I Ion_trans_2 PF07885.11 gi|20090408|ref|NP_616483.1| - 1.8e-11 43.6 10.1 3.3e-11 42.7 7.0 1.5 1 0 0 1 1 1 1 Ion channel DctQ PF04290.7 gi|20090408|ref|NP_616483.1| - 0.035 13.8 0.9 3.4 7.4 0.1 2.0 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component RDD PF06271.7 gi|20090408|ref|NP_616483.1| - 0.16 11.8 5.8 0.89 9.4 0.1 2.1 1 1 1 2 2 2 0 RDD family Ion_trans PF00520.26 gi|20090408|ref|NP_616483.1| - 0.21 10.8 6.8 0.39 9.9 4.7 1.5 1 1 0 1 1 1 0 Ion transport protein HTH_24 PF13412.1 gi|20090409|ref|NP_616484.1| - 1.3e-17 62.8 0.5 7.8e-09 34.7 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|20090409|ref|NP_616484.1| - 1e-14 54.0 0.0 1e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|20090409|ref|NP_616484.1| - 3.4e-13 49.0 0.0 2e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|20090409|ref|NP_616484.1| - 2.7e-07 30.1 0.0 0.0078 15.8 0.0 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|20090409|ref|NP_616484.1| - 1.1e-06 28.2 0.0 0.0046 16.6 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|20090409|ref|NP_616484.1| - 1.9e-06 27.4 0.0 0.012 15.2 0.0 2.4 2 0 0 2 2 2 2 MarR family TFIIE_alpha PF02002.12 gi|20090409|ref|NP_616484.1| - 5.4e-06 25.8 0.2 0.076 12.5 0.1 2.3 1 1 1 2 2 2 2 TFIIE alpha subunit HTH_34 PF13601.1 gi|20090409|ref|NP_616484.1| - 8.1e-06 25.7 0.8 0.16 12.0 0.0 2.5 3 0 0 3 3 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|20090409|ref|NP_616484.1| - 5.7e-05 22.8 0.0 0.01 15.5 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2513 PF10711.4 gi|20090409|ref|NP_616484.1| - 0.00014 21.9 0.1 0.52 10.4 0.0 2.2 2 0 0 2 2 2 2 Hypothetical protein (DUF2513) HTH_12 PF08461.5 gi|20090409|ref|NP_616484.1| - 0.00032 20.3 0.1 0.0078 15.9 0.0 2.4 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|20090409|ref|NP_616484.1| - 0.00065 19.2 0.0 0.17 11.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|20090409|ref|NP_616484.1| - 0.00082 19.1 0.0 0.43 10.4 0.0 2.3 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_10 PF04967.7 gi|20090409|ref|NP_616484.1| - 0.00094 18.7 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 2 HTH DNA binding domain HTH_27 PF13463.1 gi|20090409|ref|NP_616484.1| - 0.0011 19.2 0.0 0.047 14.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|20090409|ref|NP_616484.1| - 0.0011 18.5 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 2 HTH domain DUF4423 PF14394.1 gi|20090409|ref|NP_616484.1| - 0.0012 18.4 0.0 0.021 14.3 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Sulfolobus_pRN PF05584.6 gi|20090409|ref|NP_616484.1| - 0.0018 18.2 0.1 0.0083 16.0 0.0 2.0 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|20090409|ref|NP_616484.1| - 0.0022 17.7 0.5 0.42 10.4 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix Penicillinase_R PF03965.11 gi|20090409|ref|NP_616484.1| - 0.0045 17.0 0.0 1 9.4 0.0 2.3 1 1 1 2 2 2 1 Penicillinase repressor Rrf2 PF02082.15 gi|20090409|ref|NP_616484.1| - 0.0048 16.9 0.0 4.7 7.3 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator NUMOD1 PF07453.8 gi|20090409|ref|NP_616484.1| - 0.0068 16.2 0.1 0.032 14.0 0.0 2.1 2 0 0 2 2 2 1 NUMOD1 domain HTH_41 PF14502.1 gi|20090409|ref|NP_616484.1| - 0.0088 15.6 0.0 0.3 10.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|20090409|ref|NP_616484.1| - 0.0091 15.4 0.0 0.1 12.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Phage_rep_org_N PF09681.5 gi|20090409|ref|NP_616484.1| - 0.02 14.4 0.2 0.52 9.8 0.0 2.3 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TetR_C_2 PF08361.6 gi|20090409|ref|NP_616484.1| - 0.025 14.4 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region HTH_CodY PF08222.6 gi|20090409|ref|NP_616484.1| - 0.038 13.3 0.1 1.1 8.6 0.0 2.8 2 1 1 3 3 3 0 CodY helix-turn-helix domain FaeA PF04703.7 gi|20090409|ref|NP_616484.1| - 0.096 12.8 0.0 8.8 6.5 0.0 2.3 2 0 0 2 2 2 0 FaeA-like protein MerR PF00376.18 gi|20090409|ref|NP_616484.1| - 0.097 12.2 0.0 0.49 10.0 0.0 2.2 2 1 0 2 2 2 0 MerR family regulatory protein HTH_8 PF02954.14 gi|20090409|ref|NP_616484.1| - 0.13 11.8 0.2 0.74 9.4 0.0 2.4 3 0 0 3 3 2 0 Bacterial regulatory protein, Fis family PPC PF04151.10 gi|20090410|ref|NP_616485.1| - 0.0016 19.3 0.6 0.0016 19.3 0.4 1.6 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain Yip1 PF04893.12 gi|20090411|ref|NP_616486.1| - 9.4e-31 106.6 17.5 1.2e-30 106.2 12.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|20090411|ref|NP_616486.1| - 2.2e-09 37.1 15.8 1.6e-08 34.3 10.9 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) Pyridox_oxidase PF01243.15 gi|20090412|ref|NP_616487.1| - 2.6e-15 56.1 0.0 3.2e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|20090412|ref|NP_616487.1| - 0.089 12.3 0.0 0.16 11.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF447) Pyridox_oxase_2 PF12766.2 gi|20090412|ref|NP_616487.1| - 0.098 12.9 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Phage_integrase PF00589.17 gi|20090413|ref|NP_616488.1| - 1.8e-06 27.7 0.0 5.4e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|20090413|ref|NP_616488.1| - 8.8e-05 22.5 0.1 0.004 17.2 0.0 3.5 4 1 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|20090413|ref|NP_616488.1| - 0.014 15.7 0.0 5.1 7.5 0.0 3.2 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain Dynamin_N PF00350.18 gi|20090413|ref|NP_616488.1| - 0.12 12.1 2.8 0.16 11.8 0.3 2.2 2 0 0 2 2 2 0 Dynamin family HTH_24 PF13412.1 gi|20090414|ref|NP_616489.1| - 0.0073 15.6 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|20090414|ref|NP_616489.1| - 0.011 14.8 0.0 0.032 13.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.14 gi|20090414|ref|NP_616489.1| - 0.022 14.4 0.0 0.077 12.7 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.12 gi|20090414|ref|NP_616489.1| - 0.044 13.5 0.0 0.15 11.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_38 PF13936.1 gi|20090414|ref|NP_616489.1| - 0.05 13.1 0.1 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|20090414|ref|NP_616489.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3221 PF11518.3 gi|20090415|ref|NP_616490.1| - 0.061 12.9 0.1 0.084 12.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3221) DUF3597 PF12200.3 gi|20090416|ref|NP_616491.1| - 0.035 14.5 0.0 0.045 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3597) HTH_3 PF01381.17 gi|20090417|ref|NP_616492.1| - 0.041 13.7 0.0 0.089 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.1 gi|20090418|ref|NP_616493.1| - 0.00012 21.4 0.1 0.00016 20.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|20090418|ref|NP_616493.1| - 0.00072 19.3 0.0 0.0012 18.5 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain DUF148 PF02520.12 gi|20090418|ref|NP_616493.1| - 0.0033 17.2 1.1 0.0042 16.8 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF148 MarR_2 PF12802.2 gi|20090418|ref|NP_616493.1| - 0.0052 16.4 0.0 0.0062 16.1 0.0 1.2 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|20090418|ref|NP_616493.1| - 0.0052 16.4 0.0 0.0073 15.9 0.0 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_AsnC-type PF13404.1 gi|20090418|ref|NP_616493.1| - 0.0054 16.2 0.0 0.0098 15.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|20090418|ref|NP_616493.1| - 0.0061 16.2 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4132 PF13569.1 gi|20090418|ref|NP_616493.1| - 0.0072 15.8 0.4 0.0079 15.7 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4132) HTH_27 PF13463.1 gi|20090418|ref|NP_616493.1| - 0.0076 16.5 0.0 0.0099 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HHH_6 PF14579.1 gi|20090418|ref|NP_616493.1| - 0.0099 15.9 0.3 0.012 15.6 0.2 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif MarR PF01047.17 gi|20090418|ref|NP_616493.1| - 0.011 15.3 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family LEDGF PF11467.3 gi|20090418|ref|NP_616493.1| - 0.014 15.1 0.4 0.017 14.7 0.3 1.2 1 0 0 1 1 1 0 Lens epithelium-derived growth factor (LEDGF) HTH_IclR PF09339.5 gi|20090418|ref|NP_616493.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2582 PF10771.4 gi|20090418|ref|NP_616493.1| - 0.016 15.0 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) Rrf2 PF02082.15 gi|20090418|ref|NP_616493.1| - 0.02 14.9 0.1 0.032 14.3 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator Ada3 PF10198.4 gi|20090418|ref|NP_616493.1| - 0.028 14.1 4.1 0.032 13.9 2.8 1.1 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 PaaX PF07848.7 gi|20090418|ref|NP_616493.1| - 0.033 14.1 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein z-alpha PF02295.12 gi|20090418|ref|NP_616493.1| - 0.034 13.8 0.4 0.046 13.4 0.3 1.2 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain GntR PF00392.16 gi|20090418|ref|NP_616493.1| - 0.037 13.4 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|20090418|ref|NP_616493.1| - 0.046 13.5 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Ribosomal_S21 PF01165.15 gi|20090418|ref|NP_616493.1| - 0.05 13.0 0.2 0.11 11.9 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S21 HTH_9 PF08221.6 gi|20090418|ref|NP_616493.1| - 0.056 13.3 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Med9 PF07544.8 gi|20090418|ref|NP_616493.1| - 0.057 13.1 0.9 0.45 10.2 0.2 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 LexA_DNA_bind PF01726.11 gi|20090418|ref|NP_616493.1| - 0.058 12.9 0.0 0.081 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain PCI PF01399.22 gi|20090418|ref|NP_616493.1| - 0.058 13.7 0.0 0.064 13.5 0.0 1.2 1 0 0 1 1 1 0 PCI domain SPARC_Ca_bdg PF10591.4 gi|20090418|ref|NP_616493.1| - 0.059 13.4 1.0 0.079 12.9 0.7 1.1 1 0 0 1 1 1 0 Secreted protein acidic and rich in cysteine Ca binding region HTH_11 PF08279.7 gi|20090418|ref|NP_616493.1| - 0.07 12.7 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|20090418|ref|NP_616493.1| - 0.077 13.1 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2774 PF11242.3 gi|20090418|ref|NP_616493.1| - 0.079 12.9 0.1 0.17 11.8 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2774) TFIIE_alpha PF02002.12 gi|20090418|ref|NP_616493.1| - 0.085 12.3 0.7 0.12 11.9 0.3 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.6 gi|20090418|ref|NP_616493.1| - 0.12 12.7 0.0 0.18 12.2 0.0 1.3 1 1 0 1 1 1 0 Replication protein A C terminal VirArc_Nuclease PF12187.3 gi|20090418|ref|NP_616493.1| - 0.12 11.7 0.2 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 Viral/Archaeal nuclease HTH_28 PF13518.1 gi|20090418|ref|NP_616493.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain WXG100 PF06013.7 gi|20090418|ref|NP_616493.1| - 0.15 12.0 0.5 9 6.3 0.0 2.1 2 0 0 2 2 2 0 Proteins of 100 residues with WXG HTH_Tnp_IS630 PF01710.11 gi|20090418|ref|NP_616493.1| - 0.17 11.5 2.3 0.2 11.3 1.6 1.1 1 0 0 1 1 1 0 Transposase Synaptobrevin PF00957.16 gi|20090418|ref|NP_616493.1| - 0.2 11.2 0.9 0.36 10.4 0.5 1.6 1 1 1 2 2 2 0 Synaptobrevin MDH PF02315.11 gi|20090418|ref|NP_616493.1| - 0.26 11.2 2.0 0.65 9.9 0.3 1.9 1 1 1 2 2 2 0 Methanol dehydrogenase beta subunit DUF4423 PF14394.1 gi|20090418|ref|NP_616493.1| - 0.26 10.7 1.8 1.5 8.3 0.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) IFT20 PF14931.1 gi|20090418|ref|NP_616493.1| - 0.27 11.1 2.8 0.35 10.7 1.9 1.2 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 DUF342 PF03961.8 gi|20090418|ref|NP_616493.1| - 0.38 9.1 2.1 0.39 9.0 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) MRAP PF15183.1 gi|20090419|ref|NP_616494.1| - 0.066 12.8 0.2 0.066 12.8 0.2 2.1 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family DUF2718 PF10918.3 gi|20090419|ref|NP_616494.1| - 0.14 12.1 0.6 0.14 12.1 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2718) Guanylate_cyc PF00211.15 gi|20090420|ref|NP_616495.1| - 1.4e-12 47.3 0.1 2.7e-12 46.4 0.1 1.4 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain FtsH_ext PF06480.10 gi|20090420|ref|NP_616495.1| - 0.04 14.0 1.4 0.81 9.8 0.1 2.8 3 0 0 3 3 3 0 FtsH Extracellular DUF1029 PF06269.7 gi|20090421|ref|NP_616496.1| - 0.094 12.7 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1029) Sec10 PF07393.6 gi|20090421|ref|NP_616496.1| - 0.55 8.3 3.9 0.91 7.6 0.3 2.0 2 0 0 2 2 2 0 Exocyst complex component Sec10 Pex24p PF06398.6 gi|20090422|ref|NP_616497.1| - 0.16 10.7 4.8 0.04 12.7 0.7 1.7 1 1 1 2 2 2 0 Integral peroxisomal membrane peroxin SNO PF01174.14 gi|20090424|ref|NP_616499.1| - 5.3e-52 176.1 0.0 6e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|20090424|ref|NP_616499.1| - 7.9e-11 41.7 0.0 9.6e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|20090424|ref|NP_616499.1| - 3.1e-10 39.8 0.4 8.5e-09 35.1 0.3 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|20090424|ref|NP_616499.1| - 1.8e-08 34.2 0.0 2.2e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|20090424|ref|NP_616499.1| - 0.00041 19.8 0.0 0.00051 19.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.4 gi|20090424|ref|NP_616499.1| - 0.00074 18.4 0.0 0.0013 17.6 0.0 1.4 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal Peptidase_C26 PF07722.8 gi|20090424|ref|NP_616499.1| - 0.0078 15.6 0.0 0.058 12.8 0.0 2.4 2 1 0 2 2 2 1 Peptidase C26 DUF4066 PF13278.1 gi|20090424|ref|NP_616499.1| - 0.032 13.5 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase SOR_SNZ PF01680.12 gi|20090425|ref|NP_616500.1| - 1.5e-107 357.8 9.2 2.2e-107 357.3 6.4 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|20090425|ref|NP_616500.1| - 1.4e-12 47.1 9.0 4.2e-08 32.5 1.2 3.0 2 1 1 3 3 3 2 Thiazole biosynthesis protein ThiG DUF561 PF04481.7 gi|20090425|ref|NP_616500.1| - 0.00062 18.7 0.5 0.037 12.9 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF561) NanE PF04131.9 gi|20090425|ref|NP_616500.1| - 0.00087 18.3 4.5 0.016 14.1 0.2 3.0 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|20090425|ref|NP_616500.1| - 0.0014 17.7 0.1 0.011 14.7 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|20090425|ref|NP_616500.1| - 0.0029 16.5 1.4 0.42 9.3 0.1 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|20090425|ref|NP_616500.1| - 0.0074 15.5 0.8 0.0074 15.5 0.6 1.6 2 0 0 2 2 2 1 PcrB family NMO PF03060.10 gi|20090425|ref|NP_616500.1| - 0.0089 15.2 0.6 0.0089 15.2 0.4 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|20090425|ref|NP_616500.1| - 0.018 14.3 0.5 0.23 10.6 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein OMPdecase PF00215.19 gi|20090425|ref|NP_616500.1| - 0.023 14.0 1.8 0.66 9.3 0.0 2.5 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Sigma70_r4 PF04545.11 gi|20090426|ref|NP_616501.1| - 0.22 10.8 1.0 2.1 7.7 0.0 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 PAP2 PF01569.16 gi|20090427|ref|NP_616502.1| - 1.6e-22 79.5 0.3 1.6e-22 79.5 0.2 2.8 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|20090427|ref|NP_616502.1| - 0.00017 21.1 0.5 0.00036 20.0 0.2 1.7 1 1 0 1 1 1 1 PAP2 superfamily DLH PF01738.13 gi|20090429|ref|NP_616504.1| - 3.3e-32 111.5 0.1 3.3e-30 105.0 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|20090429|ref|NP_616504.1| - 2.7e-16 59.6 0.0 3.7e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|20090429|ref|NP_616504.1| - 7.9e-11 41.5 0.0 3.3e-06 26.4 0.0 2.7 2 1 1 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|20090429|ref|NP_616504.1| - 6.8e-10 39.2 0.0 7.2e-06 26.0 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Chlorophyllase PF07224.6 gi|20090429|ref|NP_616504.1| - 6.8e-09 34.9 0.0 1.3e-08 34.0 0.0 1.5 2 0 0 2 2 2 1 Chlorophyllase Chlorophyllase2 PF12740.2 gi|20090429|ref|NP_616504.1| - 1.2e-06 27.6 0.0 2.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_3 PF07859.8 gi|20090429|ref|NP_616504.1| - 0.00052 19.6 0.0 0.089 12.3 0.0 2.2 1 1 0 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|20090429|ref|NP_616504.1| - 0.001 18.8 0.0 0.043 13.5 0.0 2.7 2 1 1 3 3 3 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.11 gi|20090429|ref|NP_616504.1| - 0.006 16.0 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.8 gi|20090429|ref|NP_616504.1| - 0.0073 14.6 0.0 0.033 12.4 0.0 1.8 1 1 1 2 2 2 1 Platelet-activating factor acetylhydrolase, isoform II PilX_N PF14341.1 gi|20090429|ref|NP_616504.1| - 0.051 13.2 0.2 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 PilX N-terminal Sex_peptide PF08138.6 gi|20090429|ref|NP_616504.1| - 0.078 12.8 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Sex peptide (SP) family Hydrolase_4 PF12146.3 gi|20090429|ref|NP_616504.1| - 0.092 12.6 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 Putative lysophospholipase DUF457 PF04307.9 gi|20090430|ref|NP_616505.1| - 2.6e-33 114.5 9.7 3.5e-33 114.1 6.7 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PsbK PF02533.10 gi|20090430|ref|NP_616505.1| - 6.9 6.6 11.5 0.09 12.7 1.6 2.5 2 0 0 2 2 2 0 Photosystem II 4 kDa reaction centre component DUF457 PF04307.9 gi|20090431|ref|NP_616506.1| - 2.4e-31 108.1 10.7 5.6e-31 107.0 7.4 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Tic20 PF09685.5 gi|20090431|ref|NP_616506.1| - 0.0081 16.1 1.8 0.058 13.3 0.3 2.3 2 0 0 2 2 2 1 Tic20-like protein PsbK PF02533.10 gi|20090431|ref|NP_616506.1| - 0.14 12.0 3.0 0.38 10.7 2.1 1.7 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component Sod_Fe_C PF02777.13 gi|20090432|ref|NP_616507.1| - 1.6e-37 127.6 0.3 2.8e-37 126.7 0.1 1.5 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|20090432|ref|NP_616507.1| - 4.8e-28 97.2 2.0 8.1e-28 96.5 1.4 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain RP1-2 PF12042.3 gi|20090432|ref|NP_616507.1| - 0.059 13.0 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain SnoaL PF07366.7 gi|20090433|ref|NP_616508.1| - 2.5e-41 140.1 0.1 3e-41 139.9 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|20090433|ref|NP_616508.1| - 3.3e-16 59.5 0.2 4.3e-16 59.1 0.2 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|20090433|ref|NP_616508.1| - 0.0012 19.0 0.0 0.002 18.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.1 gi|20090433|ref|NP_616508.1| - 0.0054 16.7 0.0 0.0068 16.4 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF457 PF04307.9 gi|20090434|ref|NP_616509.1| - 5.4e-32 110.2 10.2 8.2e-32 109.7 7.1 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) SH PF01445.12 gi|20090434|ref|NP_616509.1| - 2.4 7.8 7.3 3 7.5 1.1 2.7 2 0 0 2 2 2 0 Viral small hydrophobic protein Mg-por_mtran_C PF07109.6 gi|20090435|ref|NP_616510.1| - 1.8e-06 27.9 0.7 3.6 7.7 0.0 5.5 2 1 4 6 6 6 2 Magnesium-protoporphyrin IX methyltransferase C-terminus Sec-ASP3 PF15432.1 gi|20090435|ref|NP_616510.1| - 6.6e-06 26.0 0.2 4.8 7.1 0.0 5.0 3 2 3 6 6 6 3 Accessory Sec secretory system ASP3 Chromosome_seg PF13889.1 gi|20090435|ref|NP_616510.1| - 0.00017 21.3 0.0 2.4 8.0 0.0 4.9 5 0 0 5 5 5 1 Chromosome segregation during meiosis HTH_7 PF02796.10 gi|20090435|ref|NP_616510.1| - 0.00043 20.0 1.9 29 4.6 0.0 5.0 5 0 0 5 5 5 0 Helix-turn-helix domain of resolvase SNAP PF14938.1 gi|20090435|ref|NP_616510.1| - 0.00064 18.9 1.9 0.048 12.7 0.4 3.4 1 1 2 3 3 3 2 Soluble NSF attachment protein, SNAP RNase_E_G PF10150.4 gi|20090435|ref|NP_616510.1| - 0.054 12.7 0.5 9.3 5.3 0.0 3.2 3 1 1 4 4 4 0 Ribonuclease E/G family DUF1890 PF09001.6 gi|20090435|ref|NP_616510.1| - 0.11 12.5 0.1 0.29 11.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) Mistic PF11458.3 gi|20090435|ref|NP_616510.1| - 0.61 10.5 8.2 4.2 7.8 0.0 4.9 5 2 2 7 7 7 0 Membrane-integrating protein Mistic IstB_IS21 PF01695.12 gi|20090436|ref|NP_616511.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20090436|ref|NP_616511.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20090436|ref|NP_616511.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20090436|ref|NP_616511.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20090436|ref|NP_616511.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20090436|ref|NP_616511.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20090436|ref|NP_616511.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20090436|ref|NP_616511.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20090436|ref|NP_616511.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20090436|ref|NP_616511.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20090436|ref|NP_616511.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20090436|ref|NP_616511.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20090436|ref|NP_616511.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20090436|ref|NP_616511.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20090436|ref|NP_616511.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20090436|ref|NP_616511.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20090436|ref|NP_616511.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20090436|ref|NP_616511.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20090436|ref|NP_616511.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20090436|ref|NP_616511.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20090436|ref|NP_616511.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20090436|ref|NP_616511.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20090436|ref|NP_616511.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20090436|ref|NP_616511.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20090436|ref|NP_616511.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20090436|ref|NP_616511.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20090436|ref|NP_616511.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20090436|ref|NP_616511.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20090437|ref|NP_616512.1| - 1e-19 70.8 0.0 1.8e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20090437|ref|NP_616512.1| - 9e-07 28.3 0.1 2e-06 27.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain rve_3 PF13683.1 gi|20090437|ref|NP_616512.1| - 7.7e-06 25.3 0.0 2.3e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.10 gi|20090437|ref|NP_616512.1| - 1.5e-05 24.7 0.2 3.2e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|20090437|ref|NP_616512.1| - 4.4e-05 22.9 0.0 0.00011 21.7 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20090437|ref|NP_616512.1| - 0.0088 16.1 0.0 0.23 11.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20090437|ref|NP_616512.1| - 0.011 15.3 0.2 0.04 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Sigma70_r4 PF04545.11 gi|20090437|ref|NP_616512.1| - 0.012 14.8 0.1 0.03 13.6 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 rve_2 PF13333.1 gi|20090437|ref|NP_616512.1| - 0.016 15.2 0.0 0.043 13.9 0.0 1.8 1 0 0 1 1 1 0 Integrase core domain Terminase_5 PF06056.7 gi|20090437|ref|NP_616512.1| - 0.019 14.5 0.0 0.054 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.17 gi|20090437|ref|NP_616512.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20090437|ref|NP_616512.1| - 0.042 13.9 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20090437|ref|NP_616512.1| - 0.049 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20090437|ref|NP_616512.1| - 0.062 12.9 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20090437|ref|NP_616512.1| - 0.072 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20090437|ref|NP_616512.1| - 0.088 12.2 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF883 PF05957.8 gi|20090438|ref|NP_616513.1| - 0.004 17.5 0.7 1.8 8.9 0.0 3.7 3 1 1 4 4 4 2 Bacterial protein of unknown function (DUF883) T2SF PF00482.18 gi|20090438|ref|NP_616513.1| - 0.026 14.4 0.8 1.2 9.0 0.1 3.2 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein F Baculo_PEP_C PF04513.7 gi|20090438|ref|NP_616513.1| - 0.027 14.3 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_7 PF02796.10 gi|20090438|ref|NP_616513.1| - 0.074 12.9 0.0 2.3 8.1 0.0 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase NPV_P10 PF05531.7 gi|20090438|ref|NP_616513.1| - 0.35 11.1 5.4 0.15 12.2 0.5 2.8 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein HSCB_C PF07743.8 gi|20090438|ref|NP_616513.1| - 0.64 10.5 15.6 5.2 7.5 0.1 5.0 3 1 2 5 5 5 0 HSCB C-terminal oligomerisation domain AAA_14 PF13173.1 gi|20090439|ref|NP_616514.1| - 3.7e-33 114.1 1.2 5.8e-33 113.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|20090439|ref|NP_616514.1| - 3.1e-10 40.0 0.9 7.2e-10 38.9 0.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|20090439|ref|NP_616514.1| - 4.8e-06 26.4 0.2 1.7e-05 24.6 0.1 2.0 1 1 1 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|20090439|ref|NP_616514.1| - 0.00072 20.3 0.1 0.0031 18.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|20090439|ref|NP_616514.1| - 0.031 14.5 0.0 0.075 13.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter TPR_12 PF13424.1 gi|20090440|ref|NP_616515.1| - 4.6e-47 157.8 38.8 4.4e-10 39.3 0.2 10.4 6 2 5 11 11 11 9 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090440|ref|NP_616515.1| - 1.9e-29 101.1 42.6 1.2e-06 28.0 0.6 10.8 6 4 3 10 10 10 8 TPR repeat TPR_10 PF13374.1 gi|20090440|ref|NP_616515.1| - 2.6e-27 93.8 8.8 0.00017 21.3 0.1 12.3 14 0 0 14 14 13 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090440|ref|NP_616515.1| - 1.3e-22 78.2 11.3 0.75 10.5 0.0 15.0 13 4 2 15 15 15 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090440|ref|NP_616515.1| - 1.4e-22 77.7 48.2 0.068 13.1 0.2 15.2 15 0 0 15 15 15 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090440|ref|NP_616515.1| - 6.9e-21 72.3 29.7 0.031 14.0 0.2 15.1 16 1 0 16 16 15 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090440|ref|NP_616515.1| - 6e-19 66.7 46.8 0.016 14.8 0.3 14.6 14 1 1 15 15 15 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090440|ref|NP_616515.1| - 2.4e-13 50.3 19.2 0.036 14.7 0.1 10.8 7 4 5 12 12 11 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090440|ref|NP_616515.1| - 5.2e-13 47.7 53.7 0.0056 16.3 0.3 13.9 15 0 0 15 15 15 5 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090440|ref|NP_616515.1| - 1e-11 44.4 24.2 9.7 6.8 0.0 14.2 13 2 0 13 13 13 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090440|ref|NP_616515.1| - 2.7e-10 40.4 23.6 0.04 14.2 0.2 11.3 8 4 3 11 11 11 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090440|ref|NP_616515.1| - 5.7e-09 35.4 14.7 0.052 13.7 0.1 11.1 12 3 0 12 12 10 2 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|20090440|ref|NP_616515.1| - 2.6e-06 26.5 8.3 1.4e-05 24.2 0.1 4.3 5 0 0 5 5 5 1 SHNi-TPR DUF2366 PF10171.4 gi|20090440|ref|NP_616515.1| - 0.0042 16.5 0.4 0.031 13.7 0.0 2.6 3 0 0 3 3 3 1 Uncharacterised conserved protein (DUF2366) Xpo1 PF08389.7 gi|20090440|ref|NP_616515.1| - 0.0057 16.5 0.2 0.57 10.0 0.0 2.8 3 0 0 3 3 3 1 Exportin 1-like protein PPR_3 PF13812.1 gi|20090440|ref|NP_616515.1| - 0.018 15.2 0.1 7.2 7.1 0.0 4.6 5 0 0 5 5 4 0 Pentatricopeptide repeat domain YfdX PF10938.3 gi|20090440|ref|NP_616515.1| - 0.046 13.3 5.3 9.2 5.9 0.0 4.1 4 0 0 4 4 4 0 YfdX protein MIT PF04212.13 gi|20090440|ref|NP_616515.1| - 0.084 12.7 0.0 0.084 12.7 0.0 8.8 11 1 0 11 11 11 0 MIT (microtubule interacting and transport) domain TPR_9 PF13371.1 gi|20090440|ref|NP_616515.1| - 0.31 10.9 5.1 0.43 10.4 0.5 3.7 6 0 0 6 6 2 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|20090440|ref|NP_616515.1| - 0.39 10.0 15.4 2.2 7.6 0.0 5.8 6 1 0 6 6 6 0 26S proteasome subunit RPN7 DUF2989 PF11207.3 gi|20090440|ref|NP_616515.1| - 0.79 9.1 6.9 1.2 8.5 0.6 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2989) TPR_21 PF09976.4 gi|20090440|ref|NP_616515.1| - 5.6 6.8 17.0 25 4.8 0.1 5.8 7 0 0 7 7 5 0 Tetratricopeptide repeat DNA_topoisoIV PF00521.15 gi|20090441|ref|NP_616516.1| - 1.3e-156 521.7 0.8 1.9e-156 521.1 0.6 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|20090441|ref|NP_616516.1| - 4.2e-67 221.2 16.2 6.1e-17 60.6 0.2 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.20 gi|20090442|ref|NP_616517.1| - 1.3e-63 213.3 1.3 2e-63 212.6 0.9 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|20090442|ref|NP_616517.1| - 5.9e-31 106.0 0.1 1.4e-30 104.8 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|20090442|ref|NP_616517.1| - 6.6e-25 87.0 0.0 1.7e-24 85.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|20090442|ref|NP_616517.1| - 7.4e-19 67.5 0.1 1.3e-18 66.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|20090442|ref|NP_616517.1| - 4.3e-05 23.1 0.0 0.00011 21.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP6A_N PF04406.9 gi|20090444|ref|NP_616519.1| - 2.6e-18 65.4 0.1 4.5e-18 64.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|20090445|ref|NP_616520.1| - 6.3e-69 230.5 0.0 1e-68 229.9 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|20090445|ref|NP_616520.1| - 3.2e-13 49.3 0.0 7.7e-13 48.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|20090445|ref|NP_616520.1| - 9.5e-10 38.2 0.0 2.1e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MAF_flag10 PF01973.13 gi|20090445|ref|NP_616520.1| - 0.0092 15.5 0.0 0.023 14.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF115 FbpA PF05833.6 gi|20090445|ref|NP_616520.1| - 0.056 11.9 0.5 0.095 11.2 0.0 1.6 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) AsnC_trans_reg PF01037.16 gi|20090446|ref|NP_616521.1| - 5.1e-11 42.1 0.3 5.7e-11 41.9 0.2 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|20090446|ref|NP_616521.1| - 3.3e-05 23.5 0.1 3.7e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.1 gi|20090446|ref|NP_616521.1| - 0.019 15.3 0.1 0.35 11.2 0.1 2.0 2 0 0 2 2 2 0 ACT domain Chlor_dismutase PF06778.7 gi|20090446|ref|NP_616521.1| - 0.048 13.3 0.1 0.053 13.2 0.1 1.1 1 0 0 1 1 1 0 Chlorite dismutase UPF0228 PF05727.6 gi|20090447|ref|NP_616522.1| - 8e-57 190.4 3.7 1.1e-56 190.0 2.6 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) YflT PF11181.3 gi|20090447|ref|NP_616522.1| - 0.057 13.5 0.2 0.093 12.8 0.1 1.5 1 0 0 1 1 1 0 Heat induced stress protein YflT Sialidase_penC PF12135.3 gi|20090447|ref|NP_616522.1| - 0.24 11.0 1.5 0.49 10.0 1.0 1.4 1 0 0 1 1 1 0 Sialidase enzyme penultimate C terminal domain Lactonase PF10282.4 gi|20090448|ref|NP_616523.1| - 1.5e-12 47.3 4.6 0.0002 20.5 0.1 4.0 1 1 3 4 4 4 3 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.11 gi|20090448|ref|NP_616523.1| - 1.3e-08 33.5 4.1 0.00044 18.6 0.1 3.0 1 1 2 3 3 3 3 Cytochrome D1 heme domain NHL PF01436.16 gi|20090448|ref|NP_616523.1| - 7.1e-08 32.0 9.6 0.0079 16.1 0.0 5.9 6 0 0 6 6 6 2 NHL repeat PD40 PF07676.7 gi|20090448|ref|NP_616523.1| - 1.8e-05 24.2 1.7 1.5 8.5 0.0 4.5 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat SBP56 PF05694.6 gi|20090448|ref|NP_616523.1| - 0.01 14.3 0.1 2.1 6.7 0.0 3.5 2 1 2 4 4 4 0 56kDa selenium binding protein (SBP56) DUF1513 PF07433.6 gi|20090448|ref|NP_616523.1| - 0.027 13.3 3.2 0.84 8.4 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1513) Arylesterase PF01731.15 gi|20090448|ref|NP_616523.1| - 0.032 14.2 3.5 35 4.4 0.0 4.5 2 1 3 5 5 5 0 Arylesterase DUF3312 PF11768.3 gi|20090448|ref|NP_616523.1| - 0.066 11.4 0.1 1.3 7.1 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3312) Cytochrom_D1 PF02239.11 gi|20090449|ref|NP_616524.1| - 8.6e-17 60.4 5.5 7.8e-08 30.9 0.2 3.3 1 1 2 4 4 4 4 Cytochrome D1 heme domain SGL PF08450.7 gi|20090449|ref|NP_616524.1| - 8.3e-14 51.5 8.5 4.5e-05 22.9 0.2 4.1 1 1 2 3 3 3 3 SMP-30/Gluconolaconase/LRE-like region Lactonase PF10282.4 gi|20090449|ref|NP_616524.1| - 1.2e-13 50.8 10.1 0.00013 21.1 0.2 3.4 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller PD40 PF07676.7 gi|20090449|ref|NP_616524.1| - 2.9e-09 36.3 2.2 2.2 8.0 0.0 5.7 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat Arylesterase PF01731.15 gi|20090449|ref|NP_616524.1| - 7.9e-09 35.3 12.9 0.56 10.2 0.1 6.3 2 2 4 6 6 6 4 Arylesterase NHL PF01436.16 gi|20090449|ref|NP_616524.1| - 7.8e-07 28.7 10.8 3.2 7.8 0.0 7.0 7 0 0 7 7 7 2 NHL repeat DUF4102 PF13356.1 gi|20090449|ref|NP_616524.1| - 3.8e-06 26.7 0.0 0.98 9.3 0.0 5.0 2 1 2 5 5 5 2 Domain of unknown function (DUF4102) Str_synth PF03088.11 gi|20090449|ref|NP_616524.1| - 2.1e-05 24.4 0.4 45 4.1 0.0 5.9 3 2 3 6 6 6 0 Strictosidine synthase SBP56 PF05694.6 gi|20090449|ref|NP_616524.1| - 9.9e-05 21.0 0.1 13 4.1 0.0 5.0 1 1 4 5 5 5 2 56kDa selenium binding protein (SBP56) PBCV_basic_adap PF08789.5 gi|20090449|ref|NP_616524.1| - 0.0011 18.5 5.6 6.8 6.4 0.0 4.6 4 0 0 4 4 4 1 PBCV-specific basic adaptor domain DUF1513 PF07433.6 gi|20090449|ref|NP_616524.1| - 0.0025 16.7 0.9 0.79 8.5 0.0 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF1513) PsbI PF02532.9 gi|20090450|ref|NP_616525.1| - 0.25 11.0 2.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Inhibitor_I42 PF09394.5 gi|20090451|ref|NP_616526.1| - 5.9e-30 103.4 1.3 9.7e-30 102.7 0.9 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 TRAP_alpha PF03896.11 gi|20090451|ref|NP_616526.1| - 0.0042 16.1 0.5 0.0044 16.0 0.3 1.2 1 0 0 1 1 1 1 Translocon-associated protein (TRAP), alpha subunit PA26 PF04636.8 gi|20090451|ref|NP_616526.1| - 0.075 11.7 0.1 0.078 11.6 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) DUF1180 PF06679.7 gi|20090451|ref|NP_616526.1| - 0.075 12.9 0.2 0.1 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) UPF0640 PF15114.1 gi|20090452|ref|NP_616527.1| - 0.16 11.4 0.4 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0640 ABC_tran PF00005.22 gi|20090454|ref|NP_616529.1| - 9.5e-32 110.1 0.0 1.7e-31 109.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090454|ref|NP_616529.1| - 2.4e-13 50.6 0.0 4.8e-08 33.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|20090454|ref|NP_616529.1| - 0.00092 17.8 0.4 0.62 8.4 0.1 2.2 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|20090454|ref|NP_616529.1| - 0.0053 17.1 6.3 0.021 15.1 4.6 1.8 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|20090454|ref|NP_616529.1| - 0.033 14.6 0.2 0.084 13.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|20090454|ref|NP_616529.1| - 0.062 12.3 0.0 1.1 8.2 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|20090454|ref|NP_616529.1| - 0.068 12.3 0.1 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|20090454|ref|NP_616529.1| - 0.084 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|20090454|ref|NP_616529.1| - 0.14 11.7 0.7 0.29 10.6 0.5 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20090454|ref|NP_616529.1| - 0.2 10.8 1.1 2 7.5 0.2 2.4 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.19 gi|20090455|ref|NP_616530.1| - 1.5e-24 86.3 19.7 1.5e-24 86.3 13.7 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|20090455|ref|NP_616530.1| - 4.2e-11 42.4 35.9 7.2e-11 41.7 24.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20090455|ref|NP_616530.1| - 0.00034 19.5 17.4 0.00034 19.5 12.1 2.3 1 1 0 2 2 2 1 ABC-2 family transporter protein Inhibitor_I42 PF09394.5 gi|20090457|ref|NP_616532.1| - 4e-27 94.3 1.0 8e-27 93.4 0.7 1.5 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DUF1180 PF06679.7 gi|20090457|ref|NP_616532.1| - 0.0006 19.7 1.1 0.00082 19.3 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1180) TRAP_alpha PF03896.11 gi|20090457|ref|NP_616532.1| - 0.018 14.0 1.5 0.027 13.4 1.1 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit PA26 PF04636.8 gi|20090457|ref|NP_616532.1| - 0.021 13.5 0.2 0.026 13.2 0.1 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) SpoIIIAH PF12685.2 gi|20090457|ref|NP_616532.1| - 0.045 13.2 3.2 0.061 12.8 2.2 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein Peptidase_M9 PF01752.12 gi|20090457|ref|NP_616532.1| - 0.076 11.8 1.7 0.08 11.8 0.4 1.5 2 0 0 2 2 2 0 Collagenase UPF0150 PF03681.10 gi|20090458|ref|NP_616533.1| - 4.1e-18 64.7 0.2 5.4e-18 64.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|20090458|ref|NP_616533.1| - 4.9e-07 29.7 0.1 5.8e-07 29.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3832) NUDIX PF00293.23 gi|20090460|ref|NP_616535.1| - 3.4e-16 59.1 0.0 3.7e-16 58.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|20090460|ref|NP_616535.1| - 1.3e-07 31.0 0.0 1.6e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|20090460|ref|NP_616535.1| - 0.008 15.5 0.1 0.0094 15.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotide hydrolase ResIII PF04851.10 gi|20090461|ref|NP_616536.1| - 6.4e-32 110.8 0.0 1.3e-31 109.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.1 gi|20090461|ref|NP_616536.1| - 1.1e-19 70.4 0.2 2.8e-19 69.0 0.1 1.7 1 0 0 1 1 1 1 PLD-like domain Helicase_C PF00271.26 gi|20090461|ref|NP_616536.1| - 2.3e-12 46.5 0.0 4.1e-11 42.5 0.0 3.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF3427 PF11907.3 gi|20090461|ref|NP_616536.1| - 5.1e-12 45.3 0.0 1.1e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) DEAD PF00270.24 gi|20090461|ref|NP_616536.1| - 7.5e-06 25.5 0.0 4.5e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|20090461|ref|NP_616536.1| - 0.052 12.7 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|20090461|ref|NP_616536.1| - 0.091 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF3427 PF11907.3 gi|20090462|ref|NP_616537.1| - 1.1e-12 47.5 0.0 1.1e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) DUF3458 PF11940.3 gi|20090463|ref|NP_616538.1| - 5e-67 226.3 1.2 8.8e-67 225.5 0.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Peptidase_M1 PF01433.15 gi|20090463|ref|NP_616538.1| - 1.5e-28 99.9 0.0 1.2e-16 60.7 0.0 2.1 2 0 0 2 2 2 2 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|20090463|ref|NP_616538.1| - 2.5e-13 50.1 0.0 5.3e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily DUF1741 PF08427.5 gi|20090463|ref|NP_616538.1| - 0.051 13.0 0.3 0.11 11.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1741) DUF1622 PF07784.6 gi|20090464|ref|NP_616539.1| - 4.8e-26 90.2 0.4 6.8e-26 89.7 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) DUF1622 PF07784.6 gi|20090465|ref|NP_616540.1| - 1.1e-25 89.0 0.5 1.7e-25 88.4 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) DUF502 PF04367.8 gi|20090465|ref|NP_616540.1| - 0.15 11.8 0.5 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF502) AgrD PF05931.6 gi|20090465|ref|NP_616540.1| - 6.9 6.3 6.8 0.6 9.7 1.0 2.0 3 0 0 3 3 3 0 Staphylococcal AgrD protein DUF1622 PF07784.6 gi|20090466|ref|NP_616541.1| - 2.1e-28 97.7 0.2 2.8e-28 97.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) PALP PF00291.20 gi|20090468|ref|NP_616543.1| - 1e-70 238.4 2.9 1.2e-70 238.1 2.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.1 gi|20090468|ref|NP_616543.1| - 0.075 12.5 1.7 0.17 11.4 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain tRNA-synt_1 PF00133.17 gi|20090469|ref|NP_616544.1| - 1.8e-60 204.6 0.1 9.7e-44 149.3 0.0 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|20090469|ref|NP_616544.1| - 2.2e-27 95.7 1.4 5.5e-12 45.0 0.0 3.2 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|20090469|ref|NP_616544.1| - 6.5e-21 74.6 0.2 1.5e-20 73.5 0.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|20090469|ref|NP_616544.1| - 8.6e-10 38.2 0.1 3.2e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|20090469|ref|NP_616544.1| - 3.1e-07 29.8 0.0 5.9e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|20090469|ref|NP_616544.1| - 0.00032 19.6 0.0 0.00091 18.1 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|20090469|ref|NP_616544.1| - 0.003 16.2 0.0 0.0074 15.0 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) TPR_2 PF07719.12 gi|20090471|ref|NP_616546.1| - 3.4e-273 860.3 156.0 5.3e-08 32.2 0.0 51.0 51 0 0 51 51 51 47 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090471|ref|NP_616546.1| - 1.6e-271 866.2 131.0 7.4e-08 31.6 0.0 50.5 51 0 0 51 51 51 47 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090471|ref|NP_616546.1| - 2.4e-263 850.3 131.8 1.4e-14 53.4 0.2 28.0 18 4 10 31 31 31 29 TPR repeat TPR_16 PF13432.1 gi|20090471|ref|NP_616546.1| - 1.5e-219 707.2 109.7 4.7e-12 46.2 0.3 30.9 17 7 12 32 32 32 31 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090471|ref|NP_616546.1| - 2.5e-165 537.0 106.8 1.3e-09 38.2 0.2 29.3 17 6 12 32 32 32 29 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090471|ref|NP_616546.1| - 2.4e-158 502.4 106.5 3.8e-05 23.1 0.0 48.3 40 7 10 50 50 49 34 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090471|ref|NP_616546.1| - 1.9e-143 453.6 114.6 3.4e-05 24.1 0.1 48.5 9 7 41 50 50 50 37 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090471|ref|NP_616546.1| - 1.1e-135 441.8 109.2 8.3e-10 38.4 0.1 29.2 9 4 21 31 31 31 24 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090471|ref|NP_616546.1| - 2.1e-132 420.5 84.8 2.4e-05 24.1 0.1 44.4 45 1 0 45 45 44 25 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20090471|ref|NP_616546.1| - 2.2e-129 421.5 73.9 2.1e-07 30.6 0.0 29.5 15 9 17 32 32 30 25 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090471|ref|NP_616546.1| - 3.7e-121 387.6 109.5 9.1e-05 22.6 0.1 48.6 50 0 0 50 50 49 23 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090471|ref|NP_616546.1| - 1.8e-109 358.0 83.3 1.2e-08 34.9 0.2 24.1 4 4 19 26 26 26 24 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|20090471|ref|NP_616546.1| - 2.2e-71 235.5 84.4 0.00027 20.7 0.1 36.7 24 14 19 43 43 39 15 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|20090471|ref|NP_616546.1| - 2.6e-68 220.5 96.4 0.0041 16.8 0.1 41.4 43 3 2 45 45 41 14 Tetratricopeptide repeat NARP1 PF12569.3 gi|20090471|ref|NP_616546.1| - 4.8e-45 154.2 63.1 1.1e-05 24.4 0.1 19.9 7 5 10 20 20 20 14 NMDA receptor-regulated protein 1 TPR_20 PF14561.1 gi|20090471|ref|NP_616546.1| - 1.3e-30 105.3 69.7 0.023 14.8 0.1 25.3 13 6 12 31 31 29 6 Tetratricopeptide repeat BTAD PF03704.12 gi|20090471|ref|NP_616546.1| - 2.4e-30 105.7 71.2 0.0013 19.0 0.4 20.1 10 5 7 19 19 19 7 Bacterial transcriptional activator domain Coatomer_E PF04733.9 gi|20090471|ref|NP_616546.1| - 3e-29 102.1 51.8 0.0036 16.5 0.1 18.0 9 6 8 19 19 19 9 Coatomer epsilon subunit TPR_10 PF13374.1 gi|20090471|ref|NP_616546.1| - 1.9e-26 91.1 122.2 0.3 11.0 0.0 35.0 41 0 0 41 41 35 8 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20090471|ref|NP_616546.1| - 1.7e-22 77.4 31.3 1.9 9.1 0.4 22.4 22 0 0 22 22 21 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20090471|ref|NP_616546.1| - 6.8e-19 67.9 67.0 0.0099 14.9 0.3 17.5 7 4 8 16 16 16 9 Tetratricopeptide repeat YfiO PF13525.1 gi|20090471|ref|NP_616546.1| - 2.2e-18 66.4 30.9 0.023 14.1 0.0 15.1 7 5 2 13 13 13 4 Outer membrane lipoprotein TPR_3 PF07720.7 gi|20090471|ref|NP_616546.1| - 2.6e-15 55.8 54.8 0.16 11.7 0.7 22.1 24 0 0 24 24 22 3 Tetratricopeptide repeat Paf67 PF10255.4 gi|20090471|ref|NP_616546.1| - 3.2e-15 55.9 0.0 2.8 6.6 0.0 13.9 9 3 6 16 16 16 1 RNA polymerase I-associated factor PAF67 Rapsyn_N PF10579.4 gi|20090471|ref|NP_616546.1| - 3.4e-12 45.9 7.7 0.96 9.2 0.0 14.4 14 2 2 16 16 13 1 Rapsyn N-terminal myristoylation and linker region PPR_3 PF13812.1 gi|20090471|ref|NP_616546.1| - 8.3e-09 35.0 2.2 3.9 8.0 0.0 11.3 9 0 0 9 9 9 1 Pentatricopeptide repeat domain TPR_5 PF12688.2 gi|20090471|ref|NP_616546.1| - 7.3e-08 32.4 34.3 14 5.7 0.0 15.7 10 5 6 18 18 18 0 Tetratrico peptide repeat Alkyl_sulf_dimr PF14863.1 gi|20090471|ref|NP_616546.1| - 1.8e-05 24.9 23.8 5 7.3 0.0 11.1 11 3 2 14 14 11 0 Alkyl sulfatase dimerisation TPR_21 PF09976.4 gi|20090471|ref|NP_616546.1| - 1.9e-05 24.6 33.9 0.043 13.7 0.1 13.1 12 4 2 15 15 14 1 Tetratricopeptide repeat PPTA PF01239.17 gi|20090471|ref|NP_616546.1| - 2.3e-05 23.5 6.6 2.2 7.8 0.0 9.5 11 0 0 11 11 8 1 Protein prenyltransferase alpha subunit repeat FAT PF02259.18 gi|20090471|ref|NP_616546.1| - 4.8e-05 22.5 16.9 0.43 9.5 0.0 9.0 4 3 2 9 9 9 1 FAT domain ChAPs PF09295.5 gi|20090471|ref|NP_616546.1| - 0.00011 21.0 16.7 0.32 9.7 0.0 8.2 9 1 0 10 10 10 1 ChAPs (Chs5p-Arf1p-binding proteins) FrhB_FdhB_C PF04432.8 gi|20090471|ref|NP_616546.1| - 0.00073 18.9 0.0 2 7.8 0.0 5.1 5 2 1 6 6 5 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Apc5 PF12862.2 gi|20090471|ref|NP_616546.1| - 0.0024 17.6 32.4 14 5.6 0.0 15.5 15 5 2 18 18 14 0 Anaphase-promoting complex subunit 5 Oxidored-like PF09791.4 gi|20090471|ref|NP_616546.1| - 0.019 14.4 0.3 2.3 7.6 0.0 4.2 3 0 0 3 3 2 0 Oxidoreductase-like protein, N-terminal vMSA PF00695.14 gi|20090471|ref|NP_616546.1| - 0.23 10.6 0.9 0.39 9.8 0.6 1.2 1 0 0 1 1 1 0 Major surface antigen from hepadnavirus PPR_2 PF13041.1 gi|20090471|ref|NP_616546.1| - 1.1 9.2 20.5 45 4.1 0.0 12.1 14 0 0 14 14 13 0 PPR repeat family SHNi-TPR PF10516.4 gi|20090471|ref|NP_616546.1| - 6.1 6.1 45.8 0.047 12.9 0.2 12.3 14 0 0 14 14 13 0 SHNi-TPR Macro PF01661.16 gi|20090472|ref|NP_616547.1| - 4.8e-44 149.0 0.0 7.8e-44 148.3 0.0 1.3 1 0 0 1 1 1 1 Macro domain URO-D PF01208.12 gi|20090473|ref|NP_616548.1| - 4.4e-86 288.9 0.0 5e-86 288.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MtaB PF12176.3 gi|20090474|ref|NP_616549.1| - 7.5e-250 829.0 9.0 8.5e-250 828.8 6.2 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.14 gi|20090475|ref|NP_616550.1| - 4.6e-19 68.4 0.1 7.8e-19 67.7 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20090475|ref|NP_616550.1| - 8.5e-14 51.3 0.0 1.8e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain DUF3734 PF12536.3 gi|20090476|ref|NP_616551.1| - 0.05 13.7 0.0 0.05 13.7 0.0 1.1 1 0 0 1 1 1 0 Patatin phospholipase CbiZ PF01955.13 gi|20090478|ref|NP_616553.1| - 1.5e-50 171.6 0.0 1.8e-50 171.3 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Cache_1 PF02743.13 gi|20090479|ref|NP_616554.1| - 3.3e-05 23.3 0.0 6.6e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Cache domain PocR PF10114.4 gi|20090482|ref|NP_616557.1| - 3.9e-67 224.7 0.1 1.9e-66 222.4 0.0 2.1 2 0 0 2 2 2 1 Sensory domain found in PocR HisKA_2 PF07568.7 gi|20090482|ref|NP_616557.1| - 1.9e-34 117.3 0.2 1.9e-34 117.3 0.2 2.2 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|20090482|ref|NP_616557.1| - 9.3e-29 99.3 0.0 2.3e-15 56.4 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|20090482|ref|NP_616557.1| - 1.4e-28 99.3 0.0 1.8e-15 57.1 0.0 5.1 5 0 0 5 5 5 3 PAS domain PAS PF00989.19 gi|20090482|ref|NP_616557.1| - 1.2e-25 89.4 0.0 2.5e-11 43.3 0.0 5.3 6 0 0 6 6 6 4 PAS fold PAS_4 PF08448.5 gi|20090482|ref|NP_616557.1| - 2.3e-22 79.1 0.0 1.1e-09 38.3 0.0 4.5 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|20090482|ref|NP_616557.1| - 4.2e-11 42.5 0.4 2e-10 40.3 0.2 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20090482|ref|NP_616557.1| - 2.8e-07 30.1 0.0 0.00026 20.7 0.0 4.0 4 0 0 4 4 4 1 PAS domain HATPase_c_2 PF13581.1 gi|20090482|ref|NP_616557.1| - 0.00011 22.0 0.0 0.00026 20.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20090482|ref|NP_616557.1| - 0.0008 19.7 0.0 0.0033 17.8 0.0 2.1 1 0 0 1 1 1 1 HWE histidine kinase PAS_10 PF13596.1 gi|20090482|ref|NP_616557.1| - 0.07 13.4 0.1 10 6.4 0.0 3.5 3 0 0 3 3 3 0 PAS domain PAS_9 PF13426.1 gi|20090483|ref|NP_616558.1| - 2.2e-51 172.5 0.0 6.6e-21 74.6 0.0 5.4 5 0 0 5 5 5 3 PAS domain PAS PF00989.19 gi|20090483|ref|NP_616558.1| - 1.4e-41 140.8 0.0 1.7e-17 63.1 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.6 gi|20090483|ref|NP_616558.1| - 7.8e-39 131.6 0.1 2.7e-18 65.8 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|20090483|ref|NP_616558.1| - 3.4e-31 107.5 0.0 3.7e-14 52.6 0.0 4.7 4 1 0 4 4 4 3 PAS fold HisKA_2 PF07568.7 gi|20090483|ref|NP_616558.1| - 1.5e-27 95.1 2.0 1.5e-27 95.1 1.4 3.0 3 0 0 3 3 2 1 Histidine kinase PAS_8 PF13188.1 gi|20090483|ref|NP_616558.1| - 1.5e-15 56.4 0.0 3.6e-08 32.9 0.0 4.5 5 0 0 5 5 5 2 PAS domain HATPase_c PF02518.21 gi|20090483|ref|NP_616558.1| - 2.2e-11 43.4 0.0 6.6e-11 41.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|20090483|ref|NP_616558.1| - 2e-10 40.5 0.0 0.0004 20.3 0.0 3.7 3 1 0 3 3 3 2 PAS domain PAS_10 PF13596.1 gi|20090483|ref|NP_616558.1| - 2.2e-10 40.7 0.3 7.8e-05 22.8 0.0 4.0 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|20090483|ref|NP_616558.1| - 2e-09 37.4 1.4 1.6e-05 24.8 0.0 4.5 4 2 0 4 4 3 2 PAS fold GAF_2 PF13185.1 gi|20090483|ref|NP_616558.1| - 2.3e-09 37.8 0.0 7.7e-09 36.1 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|20090483|ref|NP_616558.1| - 5.1e-09 36.2 0.0 1.4e-08 34.9 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|20090483|ref|NP_616558.1| - 4.5e-08 33.3 0.0 1.1e-07 32.1 0.0 1.7 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.1 gi|20090483|ref|NP_616558.1| - 0.00029 20.6 0.0 0.00069 19.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20090483|ref|NP_616558.1| - 0.065 13.6 0.1 0.18 12.2 0.1 1.8 1 0 0 1 1 1 0 HWE histidine kinase DUF4277 PF14104.1 gi|20090484|ref|NP_616559.1| - 2e-41 140.8 0.0 4.5e-41 139.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20090484|ref|NP_616559.1| - 5.7e-10 39.0 0.1 1e-08 34.9 0.1 2.3 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20090484|ref|NP_616559.1| - 0.022 14.1 0.5 0.059 12.7 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 PAS_9 PF13426.1 gi|20090485|ref|NP_616560.1| - 2.3e-40 137.1 0.1 6.9e-10 39.2 0.0 7.5 8 0 0 8 8 7 5 PAS domain HisKA_2 PF07568.7 gi|20090485|ref|NP_616560.1| - 2e-35 120.4 3.6 2.5e-34 116.9 0.3 3.2 3 0 0 3 3 3 1 Histidine kinase PAS PF00989.19 gi|20090485|ref|NP_616560.1| - 1.2e-33 115.2 0.0 4.6e-07 29.6 0.0 6.8 6 0 0 6 6 6 5 PAS fold PAS_4 PF08448.5 gi|20090485|ref|NP_616560.1| - 2.4e-33 114.4 0.0 2.5e-11 43.5 0.0 6.3 6 0 0 6 6 6 4 PAS fold PAS_3 PF08447.6 gi|20090485|ref|NP_616560.1| - 6e-32 109.5 3.2 2.6e-19 69.1 0.2 5.5 6 0 0 6 6 6 2 PAS fold GAF_2 PF13185.1 gi|20090485|ref|NP_616560.1| - 5.1e-15 56.2 0.0 1.5e-14 54.7 0.0 1.9 2 0 0 2 2 1 1 GAF domain HATPase_c PF02518.21 gi|20090485|ref|NP_616560.1| - 8.7e-13 47.9 0.0 3.3e-12 46.0 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20090485|ref|NP_616560.1| - 2e-11 43.3 0.0 0.0093 15.8 0.0 5.2 5 0 0 5 5 5 3 PAS domain PAS_7 PF12860.2 gi|20090485|ref|NP_616560.1| - 4.1e-06 26.7 2.2 0.15 12.0 0.0 5.4 5 1 0 5 5 5 2 PAS fold HWE_HK PF07536.9 gi|20090485|ref|NP_616560.1| - 9.1e-05 22.8 1.0 0.00026 21.3 0.1 2.3 2 0 0 2 2 2 1 HWE histidine kinase PAS_10 PF13596.1 gi|20090485|ref|NP_616560.1| - 0.0016 18.6 0.0 3.1 8.1 0.0 4.4 3 0 0 3 3 3 1 PAS domain GAF PF01590.21 gi|20090485|ref|NP_616560.1| - 0.0052 16.9 0.0 0.016 15.3 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|20090485|ref|NP_616560.1| - 0.012 15.7 0.0 0.087 12.9 0.0 2.5 2 0 0 2 2 2 0 GAF domain HATPase_c_3 PF13589.1 gi|20090485|ref|NP_616560.1| - 0.015 14.9 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Oxidored_nitro PF00148.14 gi|20090486|ref|NP_616561.1| - 3.6e-72 243.1 0.0 5e-72 242.7 0.0 1.3 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|20090487|ref|NP_616562.1| - 1.1e-73 248.2 0.1 1.2e-73 248.0 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.13 gi|20090488|ref|NP_616563.1| - 1.5e-94 316.2 0.0 1.7e-94 316.0 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|20090488|ref|NP_616563.1| - 1.4e-09 37.6 0.0 2.6e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20090488|ref|NP_616563.1| - 2.2e-06 26.9 0.0 4e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|20090488|ref|NP_616563.1| - 0.00097 18.5 0.0 0.042 13.2 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_31 PF13614.1 gi|20090488|ref|NP_616563.1| - 0.0022 17.9 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|20090488|ref|NP_616563.1| - 0.0037 16.3 0.0 0.0065 15.5 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_17 PF13207.1 gi|20090488|ref|NP_616563.1| - 0.0049 17.6 0.1 0.013 16.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|20090488|ref|NP_616563.1| - 0.0096 14.7 0.0 0.014 14.1 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_18 PF13238.1 gi|20090488|ref|NP_616563.1| - 0.02 15.1 0.0 0.045 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|20090488|ref|NP_616563.1| - 0.049 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|20090488|ref|NP_616563.1| - 0.06 12.2 0.2 0.092 11.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|20090488|ref|NP_616563.1| - 0.072 12.5 0.0 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|20090488|ref|NP_616563.1| - 0.099 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SRP54 PF00448.17 gi|20090488|ref|NP_616563.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|20090488|ref|NP_616563.1| - 0.14 11.5 0.1 0.39 10.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|20090488|ref|NP_616563.1| - 0.15 11.7 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Methyltransf_31 PF13847.1 gi|20090489|ref|NP_616564.1| - 5.5e-19 68.2 0.0 8.2e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090489|ref|NP_616564.1| - 2.4e-16 60.0 0.0 4.2e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090489|ref|NP_616564.1| - 4e-16 59.5 0.0 6.5e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090489|ref|NP_616564.1| - 4.4e-14 52.5 0.0 6e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090489|ref|NP_616564.1| - 9e-14 51.6 0.0 1.4e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|20090489|ref|NP_616564.1| - 9.9e-14 51.2 0.0 1.7e-13 50.5 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|20090489|ref|NP_616564.1| - 4.5e-13 48.8 0.0 6.8e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|20090489|ref|NP_616564.1| - 9.8e-13 48.4 0.0 1.5e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090489|ref|NP_616564.1| - 1.2e-07 31.2 0.0 1.9e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|20090489|ref|NP_616564.1| - 8.2e-06 25.0 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20090489|ref|NP_616564.1| - 8.8e-06 25.7 0.0 1.3e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|20090489|ref|NP_616564.1| - 1.6e-05 24.5 0.1 3.1e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|20090489|ref|NP_616564.1| - 1.8e-05 24.0 0.0 2.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|20090489|ref|NP_616564.1| - 0.0007 18.7 0.0 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|20090489|ref|NP_616564.1| - 0.0065 16.1 0.0 0.0095 15.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20090489|ref|NP_616564.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) 7TMR-DISM_7TM PF07695.6 gi|20090490|ref|NP_616565.1| - 0.026 14.1 11.7 0.035 13.7 8.1 1.2 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF3917 PF13055.1 gi|20090490|ref|NP_616565.1| - 0.42 10.8 0.2 0.42 10.8 0.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3917) YtpI PF14007.1 gi|20090490|ref|NP_616565.1| - 0.86 9.5 5.1 0.47 10.4 1.5 2.0 1 1 0 2 2 2 0 YtpI-like protein DUF3754 PF12576.3 gi|20090490|ref|NP_616565.1| - 4.9 6.7 7.2 1 8.9 2.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3754) DUF1129 PF06570.6 gi|20090490|ref|NP_616565.1| - 8.4 5.6 9.6 2.6 7.2 4.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Saccharop_dh PF03435.13 gi|20090491|ref|NP_616566.1| - 2.1e-99 333.1 0.0 2.4e-99 332.9 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|20090491|ref|NP_616566.1| - 0.11 12.5 0.0 5.5 7.0 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain DUF4096 PF13340.1 gi|20090492|ref|NP_616567.1| - 1.1e-24 86.0 1.0 1.3e-24 85.8 0.7 1.0 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.16 gi|20090493|ref|NP_616568.1| - 1.2e-14 54.3 3.0 1.1e-13 51.1 2.0 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.6 gi|20090493|ref|NP_616568.1| - 0.014 15.7 2.1 0.68 10.2 0.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1410) GDE_N_bis PF14742.1 gi|20090494|ref|NP_616569.1| - 4.6e-51 172.9 0.0 6.6e-51 172.4 0.0 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|20090494|ref|NP_616569.1| - 1.1e-17 63.8 0.0 2.4e-17 62.7 0.0 1.5 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.11 gi|20090494|ref|NP_616569.1| - 0.014 13.2 0.2 0.15 9.8 0.2 2.0 2 0 0 2 2 2 0 Mannosyl oligosaccharide glucosidase Bac_rhamnosid PF05592.6 gi|20090494|ref|NP_616569.1| - 0.047 11.9 0.0 0.066 11.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase Alpha-amylase PF00128.19 gi|20090495|ref|NP_616570.1| - 2.9e-45 155.0 0.0 8.2e-45 153.5 0.0 1.7 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Plasmid_Txe PF06769.8 gi|20090495|ref|NP_616570.1| - 0.042 13.6 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Plasmid encoded toxin Txe PAS_9 PF13426.1 gi|20090498|ref|NP_616573.1| - 9.8e-75 247.5 0.0 3.7e-19 69.0 0.0 6.4 6 0 0 6 6 6 5 PAS domain PAS PF00989.19 gi|20090498|ref|NP_616573.1| - 8.8e-50 167.2 0.0 1.2e-13 50.7 0.0 5.4 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|20090498|ref|NP_616573.1| - 3.6e-38 129.9 0.0 2.6e-12 46.7 0.0 6.0 5 2 0 5 5 5 5 PAS fold PAS_8 PF13188.1 gi|20090498|ref|NP_616573.1| - 5e-36 121.3 0.0 3e-09 36.3 0.0 4.8 4 0 0 4 4 4 4 PAS domain HisKA_2 PF07568.7 gi|20090498|ref|NP_616573.1| - 1.2e-32 111.5 0.5 1.2e-32 111.5 0.4 3.4 3 0 0 3 3 3 1 Histidine kinase PAS_3 PF08447.6 gi|20090498|ref|NP_616573.1| - 1e-25 89.6 0.0 2.6e-08 33.8 0.0 4.7 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|20090498|ref|NP_616573.1| - 2.2e-11 43.4 0.2 9.4e-11 41.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|20090498|ref|NP_616573.1| - 1.6e-09 37.8 0.1 0.055 13.4 0.0 6.6 5 2 0 5 5 5 1 PAS fold PAS_10 PF13596.1 gi|20090498|ref|NP_616573.1| - 3.9e-07 30.2 0.0 5.5e-06 26.6 0.0 3.1 4 0 0 4 4 4 1 PAS domain HATPase_c_2 PF13581.1 gi|20090498|ref|NP_616573.1| - 0.0001 22.0 0.0 0.00024 20.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20090498|ref|NP_616573.1| - 0.0034 17.7 0.8 0.015 15.6 0.0 2.7 3 0 0 3 3 2 1 HWE histidine kinase MEKHLA PF08670.6 gi|20090498|ref|NP_616573.1| - 0.075 12.5 0.0 11 5.5 0.0 3.5 4 0 0 4 4 4 0 MEKHLA domain PAS_9 PF13426.1 gi|20090499|ref|NP_616574.1| - 3e-50 168.9 0.0 1.7e-18 66.8 0.0 6.1 6 0 0 6 6 6 4 PAS domain PAS_3 PF08447.6 gi|20090499|ref|NP_616574.1| - 1.1e-46 156.8 0.2 3.3e-19 68.7 0.0 5.1 5 0 0 5 5 5 3 PAS fold PAS PF00989.19 gi|20090499|ref|NP_616574.1| - 6.1e-34 116.2 0.0 3.3e-10 39.7 0.0 5.8 5 1 0 5 5 5 4 PAS fold PAS_4 PF08448.5 gi|20090499|ref|NP_616574.1| - 7.3e-29 100.0 0.0 3.6e-13 49.5 0.0 5.4 5 1 0 5 5 5 4 PAS fold HisKA_2 PF07568.7 gi|20090499|ref|NP_616574.1| - 6.1e-28 96.4 1.6 2.1e-27 94.7 1.1 2.0 1 0 0 1 1 1 1 Histidine kinase GAF_2 PF13185.1 gi|20090499|ref|NP_616574.1| - 1e-17 64.9 0.0 2.4e-17 63.7 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|20090499|ref|NP_616574.1| - 3.2e-12 45.8 0.0 0.0036 17.1 0.0 4.9 5 0 0 5 5 4 3 PAS domain HATPase_c PF02518.21 gi|20090499|ref|NP_616574.1| - 3.6e-11 42.7 0.0 9e-11 41.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|20090499|ref|NP_616574.1| - 1e-06 28.9 0.0 2e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|20090499|ref|NP_616574.1| - 2.8e-06 27.5 0.0 0.1 12.9 0.0 5.0 4 1 0 4 4 4 1 PAS domain HATPase_c_2 PF13581.1 gi|20090499|ref|NP_616574.1| - 1.5e-05 24.8 0.2 4.2e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|20090499|ref|NP_616574.1| - 3.3e-05 23.9 0.0 9.2e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 GAF domain HWE_HK PF07536.9 gi|20090499|ref|NP_616574.1| - 0.013 15.9 0.1 0.046 14.1 0.0 2.0 1 0 0 1 1 1 0 HWE histidine kinase PAS_7 PF12860.2 gi|20090499|ref|NP_616574.1| - 0.015 15.2 6.1 0.052 13.5 0.1 4.4 4 2 0 4 4 3 0 PAS fold NTP_transf_2 PF01909.18 gi|20090500|ref|NP_616575.1| - 3e-06 27.4 0.1 7.7e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2309 PF10070.4 gi|20090500|ref|NP_616575.1| - 0.1 10.7 0.0 0.1 10.6 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) NUDIX PF00293.23 gi|20090501|ref|NP_616576.1| - 2e-14 53.3 0.0 2.3e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain SbcD_C PF12320.3 gi|20090501|ref|NP_616576.1| - 0.015 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain DDE_Tnp_IS1 PF03400.8 gi|20090502|ref|NP_616577.1| - 1.5e-13 51.0 0.4 1.6e-13 50.8 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20090503|ref|NP_616578.1| - 1.5e-06 27.6 0.0 3e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20090503|ref|NP_616578.1| - 8e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20090503|ref|NP_616578.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20090503|ref|NP_616578.1| - 0.00066 19.8 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20090503|ref|NP_616578.1| - 0.004 16.6 0.0 0.022 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20090503|ref|NP_616578.1| - 0.0058 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20090503|ref|NP_616578.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20090503|ref|NP_616578.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20090503|ref|NP_616578.1| - 0.019 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20090503|ref|NP_616578.1| - 0.051 13.4 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20090503|ref|NP_616578.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20090503|ref|NP_616578.1| - 0.079 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20090503|ref|NP_616578.1| - 0.13 12.2 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20090503|ref|NP_616578.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|20090503|ref|NP_616578.1| - 5.1 6.8 7.5 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|20090503|ref|NP_616578.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Met_10 PF02475.11 gi|20090504|ref|NP_616579.1| - 1.4e-51 174.9 0.0 2.2e-51 174.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|20090504|ref|NP_616579.1| - 1.5e-07 31.4 0.0 2.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090504|ref|NP_616579.1| - 7e-06 26.5 0.0 1.7e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090504|ref|NP_616579.1| - 0.0001 21.9 0.0 0.00023 20.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|20090504|ref|NP_616579.1| - 0.00017 21.1 0.0 0.00027 20.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|20090504|ref|NP_616579.1| - 0.0022 17.4 0.0 0.0042 16.5 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 PRMT5 PF05185.11 gi|20090504|ref|NP_616579.1| - 0.0055 15.6 0.0 0.049 12.5 0.0 1.9 2 0 0 2 2 2 1 PRMT5 arginine-N-methyltransferase Methyltransf_21 PF05050.7 gi|20090504|ref|NP_616579.1| - 0.01 15.8 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain TRM PF02005.11 gi|20090504|ref|NP_616579.1| - 0.014 14.3 0.0 0.034 13.0 0.0 1.5 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase Aha1_N PF09229.6 gi|20090504|ref|NP_616579.1| - 0.053 13.3 0.0 0.59 9.9 0.0 2.2 2 0 0 2 2 2 0 Activator of Hsp90 ATPase, N-terminal Pyr_redox_2 PF07992.9 gi|20090505|ref|NP_616580.1| - 7.1e-29 101.1 0.1 1.9e-26 93.2 0.0 3.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|20090505|ref|NP_616580.1| - 5e-20 71.5 0.1 4e-19 68.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|20090505|ref|NP_616580.1| - 1.7e-13 50.7 0.0 3.9e-13 49.6 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|20090505|ref|NP_616580.1| - 2.5e-06 26.6 0.1 0.068 12.0 0.0 2.8 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|20090505|ref|NP_616580.1| - 0.016 14.1 0.0 0.028 13.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain PTS_2-RNA PF01885.11 gi|20090505|ref|NP_616580.1| - 0.065 12.5 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA 2'-phosphotransferase, Tpt1 / KptA family Mqo PF06039.10 gi|20090505|ref|NP_616580.1| - 0.086 10.9 0.0 0.13 10.4 0.0 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) DUF92 PF01940.11 gi|20090506|ref|NP_616581.1| - 4.2e-68 228.8 15.7 4.2e-68 228.8 10.9 2.2 2 0 0 2 2 2 1 Integral membrane protein DUF92 DJ-1_PfpI PF01965.19 gi|20090507|ref|NP_616582.1| - 3.9e-30 104.2 0.0 5e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|20090507|ref|NP_616582.1| - 4.7e-10 38.9 0.0 6.1e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|20090507|ref|NP_616582.1| - 0.018 14.5 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Nitroreductase PF00881.19 gi|20090508|ref|NP_616583.1| - 6.7e-17 61.8 0.0 9.5e-09 35.2 0.0 2.3 2 0 0 2 2 2 2 Nitroreductase family DUF21 PF01595.15 gi|20090509|ref|NP_616584.1| - 1.9e-35 121.8 2.1 2.5e-35 121.4 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 MFS_1 PF07690.11 gi|20090510|ref|NP_616585.1| - 9.1e-57 192.3 46.8 9.1e-57 192.3 32.4 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|20090510|ref|NP_616585.1| - 2.7e-11 42.7 32.8 1.4e-10 40.3 9.5 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|20090510|ref|NP_616585.1| - 4.8e-09 34.8 10.8 7.7e-09 34.2 3.3 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|20090510|ref|NP_616585.1| - 1.4e-07 30.2 39.6 0.00012 20.5 15.2 2.9 1 1 2 3 3 3 2 MFS/sugar transport protein PUCC PF03209.10 gi|20090510|ref|NP_616585.1| - 2.7e-05 23.0 6.7 2.7e-05 23.0 4.6 2.3 2 0 0 2 2 2 2 PUCC protein MFS_1_like PF12832.2 gi|20090510|ref|NP_616585.1| - 0.00072 19.2 2.0 0.0046 16.7 0.1 2.9 2 0 0 2 2 2 1 MFS_1 like family Glutaredoxin PF00462.19 gi|20090511|ref|NP_616586.1| - 3.7e-12 46.0 0.0 5.7e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|20090511|ref|NP_616586.1| - 0.00092 19.3 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|20090511|ref|NP_616586.1| - 0.002 18.2 0.1 0.079 13.0 0.0 2.1 2 0 0 2 2 2 1 ArsC family GST_N_2 PF13409.1 gi|20090511|ref|NP_616586.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|20090511|ref|NP_616586.1| - 0.03 14.5 0.1 0.054 13.6 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|20090511|ref|NP_616586.1| - 0.059 13.1 0.1 0.22 11.3 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin domain DUF836 PF05768.9 gi|20090511|ref|NP_616586.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FeThRed_B PF02943.10 gi|20090512|ref|NP_616587.1| - 3.6e-25 87.8 0.4 3.6e-25 87.8 0.3 1.5 2 0 0 2 2 2 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|20090512|ref|NP_616587.1| - 0.0097 15.3 0.6 0.019 14.3 0.4 1.5 1 0 0 1 1 1 1 RecR protein HypA PF01155.14 gi|20090512|ref|NP_616587.1| - 0.012 15.2 1.2 0.025 14.2 0.9 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-MIZ PF02891.15 gi|20090512|ref|NP_616587.1| - 0.13 11.7 3.7 15 5.2 0.0 3.3 3 0 0 3 3 3 0 MIZ/SP-RING zinc finger Rubredoxin PF00301.15 gi|20090512|ref|NP_616587.1| - 0.48 10.3 13.7 1.3 8.9 5.5 3.3 2 1 0 2 2 2 0 Rubredoxin MTHFR_C PF12225.3 gi|20090512|ref|NP_616587.1| - 1.6 8.3 5.6 0.25 10.8 0.6 2.0 2 0 0 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal zf-like PF04071.7 gi|20090512|ref|NP_616587.1| - 2.5 7.8 7.0 2.9 7.6 1.0 2.6 2 1 0 2 2 2 0 Cysteine-rich small domain Peptidase_C1 PF00112.18 gi|20090513|ref|NP_616588.1| - 3.3e-19 69.6 0.1 5.8e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Papain family cysteine protease Big_3_4 PF13754.1 gi|20090513|ref|NP_616588.1| - 1.5e-10 41.2 42.3 0.00034 20.8 4.5 5.9 3 3 3 6 6 6 3 Bacterial Ig-like domain (group 3) Big_3_2 PF12245.3 gi|20090513|ref|NP_616588.1| - 0.00018 20.9 0.2 0.022 14.2 0.0 3.6 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) HYR PF02494.11 gi|20090513|ref|NP_616588.1| - 0.77 9.8 10.5 0.29 11.1 1.2 4.1 4 1 0 4 4 4 0 HYR domain Cauli_AT PF03233.8 gi|20090513|ref|NP_616588.1| - 2.5 7.8 4.5 23 4.6 0.2 2.4 2 0 0 2 2 2 0 Aphid transmission protein Pro_isomerase PF00160.16 gi|20090514|ref|NP_616589.1| - 7e-51 172.4 0.8 7.7e-51 172.3 0.6 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4F5 PF04419.9 gi|20090515|ref|NP_616590.1| - 1.2 9.9 4.3 23 5.8 0.2 2.3 2 0 0 2 2 2 0 4F5 protein family DUF1371 PF07115.6 gi|20090516|ref|NP_616591.1| - 0.059 13.5 0.1 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1371) NTPase_1 PF03266.10 gi|20090516|ref|NP_616591.1| - 0.12 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 NTPase TrmB PF01978.14 gi|20090517|ref|NP_616592.1| - 8.2e-18 63.8 0.0 1.3e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|20090517|ref|NP_616592.1| - 0.0013 18.1 0.1 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.7 gi|20090517|ref|NP_616592.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|20090517|ref|NP_616592.1| - 0.027 14.1 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|20090517|ref|NP_616592.1| - 0.036 13.6 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Ribonuc_red_lgC PF02867.10 gi|20090518|ref|NP_616593.1| - 2e-142 475.5 0.0 5.9e-100 335.3 0.0 3.0 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|20090518|ref|NP_616593.1| - 1.2e-14 53.8 0.0 5e-14 51.8 0.0 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain EamA PF00892.15 gi|20090519|ref|NP_616594.1| - 4.4e-25 88.1 35.9 1.6e-14 54.0 8.3 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|20090519|ref|NP_616594.1| - 4e-09 36.6 29.0 1.8e-07 31.3 2.7 3.5 3 1 1 4 4 4 3 Multidrug resistance efflux transporter LHC PF00556.15 gi|20090519|ref|NP_616594.1| - 2.5 7.9 0.0 2.5 7.9 0.0 3.2 3 0 0 3 3 3 0 Antenna complex alpha/beta subunit EamA PF00892.15 gi|20090520|ref|NP_616595.1| - 8.6e-26 90.4 31.5 9.2e-15 54.7 5.6 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|20090520|ref|NP_616595.1| - 7.6e-06 26.1 4.8 7.6e-06 26.1 3.3 3.0 2 1 0 2 2 2 1 Multidrug resistance efflux transporter ABC_tran PF00005.22 gi|20090521|ref|NP_616596.1| - 1.1e-32 113.2 0.0 1.4e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|20090521|ref|NP_616596.1| - 9.9e-10 38.0 0.0 9.3e-05 21.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|20090521|ref|NP_616596.1| - 1.3e-08 35.2 0.0 1.3e-05 25.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20090521|ref|NP_616596.1| - 2.4e-05 23.7 0.1 4.7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20090521|ref|NP_616596.1| - 0.00036 20.6 0.2 0.003 17.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20090521|ref|NP_616596.1| - 0.0004 20.4 0.1 0.00093 19.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|20090521|ref|NP_616596.1| - 0.00041 19.7 0.0 0.0076 15.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|20090521|ref|NP_616596.1| - 0.00071 19.9 0.0 0.0013 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20090521|ref|NP_616596.1| - 0.0014 18.1 0.1 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|20090521|ref|NP_616596.1| - 0.0025 18.5 1.0 0.006 17.4 0.2 1.7 2 1 0 2 2 1 1 AAA domain RNA12 PF10443.4 gi|20090521|ref|NP_616596.1| - 0.0049 15.4 0.0 0.0094 14.4 0.0 1.4 2 0 0 2 2 2 1 RNA12 protein DUF258 PF03193.11 gi|20090521|ref|NP_616596.1| - 0.0056 15.8 0.0 0.0085 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|20090521|ref|NP_616596.1| - 0.0091 15.8 0.2 0.013 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|20090521|ref|NP_616596.1| - 0.013 15.1 0.3 0.12 12.0 0.1 2.3 2 1 1 3 3 2 0 NACHT domain MobB PF03205.9 gi|20090521|ref|NP_616596.1| - 0.015 15.0 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|20090521|ref|NP_616596.1| - 0.019 14.0 0.0 0.031 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|20090521|ref|NP_616596.1| - 0.028 14.3 0.0 0.072 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|20090521|ref|NP_616596.1| - 0.035 14.4 0.1 0.094 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|20090521|ref|NP_616596.1| - 0.037 13.8 0.5 0.063 13.0 0.2 1.5 2 0 0 2 2 1 0 Domain of unknown function DUF87 CbiA PF01656.18 gi|20090521|ref|NP_616596.1| - 0.038 13.4 0.5 0.7 9.2 0.3 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|20090521|ref|NP_616596.1| - 0.04 13.3 0.0 0.54 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|20090521|ref|NP_616596.1| - 0.054 12.3 0.1 0.11 11.3 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain SH3_2 PF07653.12 gi|20090521|ref|NP_616596.1| - 0.067 12.6 0.0 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 Variant SH3 domain AAA_15 PF13175.1 gi|20090521|ref|NP_616596.1| - 0.07 12.1 0.0 2.8 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|20090521|ref|NP_616596.1| - 0.1 11.7 0.0 2.1 7.4 0.0 2.1 2 0 0 2 2 2 0 KaiC MMR_HSR1 PF01926.18 gi|20090521|ref|NP_616596.1| - 0.1 12.5 0.6 0.3 11.0 0.2 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|20090521|ref|NP_616596.1| - 0.11 12.3 0.1 0.29 10.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|20090521|ref|NP_616596.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|20090521|ref|NP_616596.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|20090521|ref|NP_616596.1| - 0.13 12.3 0.0 0.32 11.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase T4SS-DNA_transf PF02534.9 gi|20090521|ref|NP_616596.1| - 0.15 10.6 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer DUF296 PF03479.10 gi|20090522|ref|NP_616597.1| - 1.4e-17 63.4 0.0 1.5e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) Methyltransf_11 PF08241.7 gi|20090523|ref|NP_616598.1| - 2.2e-16 60.1 0.0 4.8e-16 59.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090523|ref|NP_616598.1| - 3.5e-09 36.4 0.1 6.4e-09 35.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090523|ref|NP_616598.1| - 4.3e-09 36.6 0.0 7.5e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090523|ref|NP_616598.1| - 7.1e-09 35.5 0.0 1.1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090523|ref|NP_616598.1| - 3.1e-06 27.7 0.0 7.6e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090523|ref|NP_616598.1| - 4.2e-06 27.1 0.0 2.3e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain FmrO PF07091.6 gi|20090523|ref|NP_616598.1| - 0.00057 18.9 0.0 0.00078 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Ubie_methyltran PF01209.13 gi|20090523|ref|NP_616598.1| - 0.0031 16.6 0.0 0.0047 16.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TrmB PF01978.14 gi|20090524|ref|NP_616599.1| - 0.0023 17.5 0.0 0.0041 16.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|20090524|ref|NP_616599.1| - 0.0065 16.2 0.5 0.014 15.1 0.0 1.8 3 0 0 3 3 3 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|20090524|ref|NP_616599.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF387 PF04079.11 gi|20090524|ref|NP_616599.1| - 0.019 14.3 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Enolase_C PF00113.17 gi|20090525|ref|NP_616600.1| - 1.8e-116 388.3 0.7 2.4e-116 387.8 0.5 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|20090525|ref|NP_616600.1| - 5e-62 207.6 0.0 1.1e-61 206.5 0.0 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|20090525|ref|NP_616600.1| - 0.0067 15.3 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|20090525|ref|NP_616600.1| - 0.029 14.3 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 Enolase C-terminal domain-like MacB_PCD PF12704.2 gi|20090527|ref|NP_616602.1| - 9.1e-31 107.2 0.5 9.1e-31 107.2 0.4 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20090527|ref|NP_616602.1| - 2.4e-25 88.6 9.6 2.4e-25 88.6 6.7 2.1 2 0 0 2 2 2 1 FtsX-like permease family DUF4064 PF13273.1 gi|20090527|ref|NP_616602.1| - 0.039 14.0 7.8 0.068 13.2 0.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) DUF788 PF05620.6 gi|20090527|ref|NP_616602.1| - 0.64 9.8 3.3 2.1 8.1 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF788) TauE PF01925.14 gi|20090528|ref|NP_616603.1| - 2e-47 161.6 33.9 2.5e-47 161.3 23.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TMEMspv1-c74-12 PF11044.3 gi|20090528|ref|NP_616603.1| - 0.21 11.1 1.5 0.36 10.3 0.0 2.3 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein E1-E2_ATPase PF00122.15 gi|20090530|ref|NP_616605.1| - 2.8e-65 219.5 2.5 2.8e-65 219.5 1.8 3.1 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|20090530|ref|NP_616605.1| - 5e-27 95.7 0.4 5e-27 95.7 0.3 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|20090530|ref|NP_616605.1| - 5e-18 64.3 1.1 9.8e-18 63.3 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|20090530|ref|NP_616605.1| - 8.5e-15 55.4 0.0 2.5e-14 53.9 0.0 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20090530|ref|NP_616605.1| - 5.9e-06 26.0 0.2 0.00014 21.4 0.1 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase SET PF00856.23 gi|20090531|ref|NP_616606.1| - 1.5e-13 51.4 0.8 2.7e-11 44.0 0.5 2.1 1 1 0 1 1 1 1 SET domain Fer4_19 PF06902.6 gi|20090532|ref|NP_616607.1| - 1.6e-26 91.8 0.1 3.1e-26 90.9 0.1 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.5 gi|20090532|ref|NP_616607.1| - 5.1e-16 58.2 0.1 1.2e-15 57.0 0.1 1.6 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Herpes_glycop_H PF02489.11 gi|20090533|ref|NP_616608.1| - 0.054 11.4 0.1 0.055 11.4 0.1 1.0 1 0 0 1 1 1 0 Herpesvirus glycoprotein H Cpn60_TCP1 PF00118.19 gi|20090534|ref|NP_616609.1| - 1.3e-151 505.5 10.3 1.4e-151 505.3 7.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Rib_5-P_isom_A PF06026.9 gi|20090535|ref|NP_616610.1| - 3e-61 205.7 0.2 4.1e-61 205.2 0.1 1.2 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|20090535|ref|NP_616610.1| - 5.6e-07 29.3 0.4 0.001 18.7 0.0 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain DUF2478 PF10649.4 gi|20090535|ref|NP_616610.1| - 0.062 12.6 0.1 0.16 11.3 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2478) tRNA-synt_2 PF00152.15 gi|20090536|ref|NP_616611.1| - 2.2e-94 315.9 0.5 2.9e-94 315.6 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|20090536|ref|NP_616611.1| - 4.9e-14 51.9 0.1 9.3e-14 51.0 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|20090536|ref|NP_616611.1| - 0.00014 21.1 1.7 0.021 14.0 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Cupredoxin_1 PF13473.1 gi|20090537|ref|NP_616612.1| - 4.4e-12 45.8 0.1 6.6e-12 45.2 0.1 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|20090537|ref|NP_616612.1| - 2.7e-10 40.3 0.5 1.8e-09 37.7 0.1 2.3 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family InvH PF04741.7 gi|20090537|ref|NP_616612.1| - 0.081 12.7 0.0 0.24 11.2 0.0 1.6 1 1 1 2 2 2 0 InvH outer membrane lipoprotein DUF1443 PF07280.6 gi|20090537|ref|NP_616612.1| - 1.5 8.4 0.0 1.5 8.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1443) Metallophos_2 PF12850.2 gi|20090538|ref|NP_616613.1| - 1.7e-20 73.4 0.1 2.2e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20090538|ref|NP_616613.1| - 7.8e-12 45.0 4.8 5.8e-11 42.1 3.4 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|20090538|ref|NP_616613.1| - 0.00041 19.5 0.2 0.14 11.3 0.0 2.5 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily MutL PF13941.1 gi|20090538|ref|NP_616613.1| - 0.0099 14.2 0.0 0.013 13.8 0.0 1.1 1 0 0 1 1 1 1 MutL protein DUF2124 PF09897.4 gi|20090538|ref|NP_616613.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) DNA_pol_E_B PF04042.11 gi|20090538|ref|NP_616613.1| - 0.099 11.8 0.1 0.93 8.7 0.0 2.3 2 1 0 2 2 2 0 DNA polymerase alpha/epsilon subunit B Pribosyltran PF00156.22 gi|20090539|ref|NP_616614.1| - 1.2e-20 73.4 0.1 2.1e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Adaptin_binding PF10199.4 gi|20090541|ref|NP_616616.1| - 0.023 14.9 1.7 0.038 14.2 1.2 1.6 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 DUF3209 PF11483.3 gi|20090541|ref|NP_616616.1| - 2.1 8.6 8.4 0.14 12.5 0.4 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3209) CrtC PF07143.6 gi|20090542|ref|NP_616617.1| - 1.1e-08 34.7 1.2 1.3e-08 34.5 0.2 1.5 2 0 0 2 2 2 1 Hydroxyneurosporene synthase (CrtC) DUF711 PF05167.7 gi|20090543|ref|NP_616618.1| - 5.5e-181 601.6 8.3 6.8e-181 601.3 5.8 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Phage_integrase PF00589.17 gi|20090544|ref|NP_616619.1| - 6.2e-26 91.0 0.0 1.1e-25 90.3 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|20090544|ref|NP_616619.1| - 0.00012 22.1 0.1 0.00057 19.9 0.0 2.2 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.2 gi|20090544|ref|NP_616619.1| - 0.00064 19.4 1.7 0.0017 18.1 1.2 1.6 1 0 0 1 1 1 1 Double zinc ribbon Phage_int_SAM_4 PF13495.1 gi|20090544|ref|NP_616619.1| - 0.001 19.3 1.8 0.025 14.8 0.0 2.8 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.1 gi|20090544|ref|NP_616619.1| - 0.011 15.2 4.7 0.027 13.9 3.2 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|20090544|ref|NP_616619.1| - 0.02 14.0 3.1 0.045 12.9 2.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Leu_zip PF15294.1 gi|20090544|ref|NP_616619.1| - 0.027 13.5 0.3 0.083 11.9 0.0 1.8 2 0 0 2 2 2 0 Leucine zipper Zn_ribbon_2 PF12674.2 gi|20090544|ref|NP_616619.1| - 0.036 14.3 1.9 2.8 8.3 0.1 3.1 3 0 0 3 3 3 0 Putative zinc ribbon domain Plasmid_stabil PF05016.9 gi|20090546|ref|NP_616621.1| - 2.6e-10 40.5 0.0 2.9e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein TAFII28 PF04719.9 gi|20090546|ref|NP_616621.1| - 0.1 12.3 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 hTAFII28-like protein conserved region PRD PF00874.15 gi|20090548|ref|NP_616623.1| - 0.031 14.3 2.2 0.031 14.3 0.5 1.7 1 1 1 2 2 2 0 PRD domain DUF1280 PF06918.9 gi|20090548|ref|NP_616623.1| - 0.047 12.9 0.0 0.066 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) DNA_ligase_ZBD PF03119.11 gi|20090548|ref|NP_616623.1| - 0.067 12.9 1.3 0.28 10.9 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1987 PF09345.5 gi|20090548|ref|NP_616623.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1987) Transglut_core PF01841.14 gi|20090549|ref|NP_616624.1| - 0.0017 18.5 0.0 0.0038 17.4 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4131 PF13567.1 gi|20090549|ref|NP_616624.1| - 0.061 12.7 0.0 0.091 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2542 PF10808.3 gi|20090549|ref|NP_616624.1| - 0.3 11.3 2.0 9.7 6.5 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2542) s48_45 PF07422.8 gi|20090549|ref|NP_616624.1| - 1.3 9.1 4.3 1.1 9.3 1.5 2.1 2 1 0 2 2 2 0 Sexual stage antigen s48/45 domain AAA_16 PF13191.1 gi|20090550|ref|NP_616625.1| - 8.9e-07 29.0 0.0 9.4e-06 25.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|20090550|ref|NP_616625.1| - 6.8e-06 25.9 3.1 1.3e-05 25.0 2.2 1.7 1 1 0 1 1 1 1 Archaeal ATPase Miro PF08477.8 gi|20090550|ref|NP_616625.1| - 0.00025 21.5 0.1 0.0005 20.5 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Mga PF05043.8 gi|20090550|ref|NP_616625.1| - 0.011 16.0 1.3 0.017 15.3 0.0 2.0 3 0 0 3 3 3 0 Mga helix-turn-helix domain DUF258 PF03193.11 gi|20090550|ref|NP_616625.1| - 0.012 14.8 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20090550|ref|NP_616625.1| - 0.031 15.0 0.2 0.78 10.5 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|20090550|ref|NP_616625.1| - 0.033 13.7 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20090550|ref|NP_616625.1| - 0.043 13.9 0.0 0.091 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|20090550|ref|NP_616625.1| - 0.099 12.8 0.4 0.62 10.2 0.0 2.4 2 2 0 2 2 2 0 RNA helicase Phage_Gp111 PF07410.6 gi|20090550|ref|NP_616625.1| - 0.15 12.2 1.5 0.25 11.4 0.1 2.1 3 0 0 3 3 3 0 Streptococcus thermophilus bacteriophage Gp111 protein TPR_12 PF13424.1 gi|20090551|ref|NP_616626.1| - 5.1e-52 173.7 8.1 1.3e-27 95.5 0.3 2.8 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090551|ref|NP_616626.1| - 1.4e-31 107.4 7.4 3.5e-15 55.3 0.2 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090551|ref|NP_616626.1| - 2.5e-17 61.2 1.7 9.1e-08 31.3 0.1 2.9 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090551|ref|NP_616626.1| - 1.3e-16 59.4 8.3 5.8e-09 35.1 0.4 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090551|ref|NP_616626.1| - 1.1e-15 56.9 0.8 2.4e-15 55.9 0.2 1.8 2 0 0 2 2 2 1 TPR repeat TPR_8 PF13181.1 gi|20090551|ref|NP_616626.1| - 9.4e-13 46.9 2.3 3.5e-06 26.4 0.2 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090551|ref|NP_616626.1| - 2.3e-12 45.7 6.9 1.6e-06 27.5 0.2 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090551|ref|NP_616626.1| - 3.2e-08 33.5 1.4 0.011 16.2 0.1 3.2 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090551|ref|NP_616626.1| - 6.6e-08 33.0 0.1 1.4e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090551|ref|NP_616626.1| - 2.3e-06 27.6 0.1 0.021 15.2 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090551|ref|NP_616626.1| - 3.9e-06 27.1 0.7 2.2e-05 24.6 0.2 2.4 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090551|ref|NP_616626.1| - 8.3e-06 25.6 3.2 0.0099 16.0 0.2 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090551|ref|NP_616626.1| - 8.4e-06 25.8 0.3 4.5e-05 23.5 0.0 2.2 2 1 1 3 3 2 2 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.13 gi|20090551|ref|NP_616626.1| - 1e-05 25.3 2.3 0.072 12.9 0.0 2.8 2 1 1 3 3 2 2 MIT (microtubule interacting and transport) domain Tcf25 PF04910.9 gi|20090551|ref|NP_616626.1| - 6.4e-05 22.0 0.0 0.019 13.9 0.0 2.3 1 1 1 2 2 2 2 Transcriptional repressor TCF25 SNAP PF14938.1 gi|20090551|ref|NP_616626.1| - 0.00021 20.5 0.0 0.00038 19.6 0.0 1.4 1 0 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_5 PF12688.2 gi|20090551|ref|NP_616626.1| - 0.00064 19.7 0.0 0.028 14.4 0.0 2.3 1 1 0 1 1 1 1 Tetratrico peptide repeat TPR_9 PF13371.1 gi|20090551|ref|NP_616626.1| - 0.00087 19.0 0.0 0.0017 18.1 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|20090551|ref|NP_616626.1| - 0.001 18.4 0.1 1.5 8.1 0.0 2.3 1 1 1 2 2 2 2 26S proteasome subunit RPN7 EzrA PF06160.7 gi|20090551|ref|NP_616626.1| - 0.008 14.4 0.0 2.2 6.3 0.0 2.3 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA DUF2225 PF09986.4 gi|20090551|ref|NP_616626.1| - 0.012 15.0 0.0 0.056 12.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) 14-3-3 PF00244.15 gi|20090551|ref|NP_616626.1| - 0.019 14.0 0.7 0.14 11.2 0.0 2.1 1 1 1 2 2 2 0 14-3-3 protein HHH_8 PF14716.1 gi|20090551|ref|NP_616626.1| - 0.019 15.1 0.1 12 6.2 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain TPR_15 PF13429.1 gi|20090551|ref|NP_616626.1| - 0.022 13.8 0.1 2.8 6.9 0.0 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat NRDE-2 PF08424.5 gi|20090551|ref|NP_616626.1| - 0.032 13.1 0.0 1.7 7.4 0.0 2.4 1 1 1 2 2 2 0 NRDE-2, necessary for RNA interference Rab5-bind PF09311.6 gi|20090551|ref|NP_616626.1| - 0.046 13.6 0.0 0.99 9.2 0.0 2.2 2 0 0 2 2 2 0 Rabaptin-like protein Fis1_TPR_C PF14853.1 gi|20090551|ref|NP_616626.1| - 0.081 12.8 0.6 9.5 6.1 0.1 2.6 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat Peptidase_M91 PF14891.1 gi|20090552|ref|NP_616627.1| - 0.032 14.3 0.8 0.042 13.9 0.6 1.1 1 0 0 1 1 1 0 Effector protein Acetyltransf_1 PF00583.19 gi|20090553|ref|NP_616628.1| - 8.1e-10 38.6 0.0 1.5e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|20090553|ref|NP_616628.1| - 1.6e-09 37.6 0.0 2.5e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20090553|ref|NP_616628.1| - 7.3e-08 32.4 0.0 1.2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20090553|ref|NP_616628.1| - 0.0005 20.1 0.0 0.00094 19.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Mec-17 PF05301.6 gi|20090553|ref|NP_616628.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 MOZ_SAS PF01853.13 gi|20090553|ref|NP_616628.1| - 0.1 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 MOZ/SAS family CAT PF00302.13 gi|20090555|ref|NP_616630.1| - 1.4e-40 139.1 5.1 1.6e-40 138.9 3.5 1.0 1 0 0 1 1 1 1 Chloramphenicol acetyltransferase 2-oxoacid_dh PF00198.18 gi|20090555|ref|NP_616630.1| - 0.0041 16.4 0.0 0.07 12.3 0.0 2.1 2 0 0 2 2 2 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HisKA_2 PF07568.7 gi|20090556|ref|NP_616631.1| - 3.3e-28 97.3 0.3 1.1e-27 95.6 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|20090556|ref|NP_616631.1| - 7e-17 61.3 0.0 1.5e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|20090556|ref|NP_616631.1| - 1.4e-12 47.2 0.2 3.9e-12 45.8 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|20090556|ref|NP_616631.1| - 6.3e-07 29.7 0.0 1.3e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.1 gi|20090556|ref|NP_616631.1| - 7.6e-05 23.0 0.0 0.00021 21.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|20090556|ref|NP_616631.1| - 0.002 17.8 0.0 0.0049 16.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain LON PF02190.11 gi|20090556|ref|NP_616631.1| - 0.065 12.8 0.2 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 ATP-dependent protease La (LON) domain RHH_1 PF01402.16 gi|20090557|ref|NP_616632.1| - 0.0023 17.7 0.0 0.096 12.6 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|20090557|ref|NP_616632.1| - 0.068 12.9 1.7 0.2 11.4 0.0 2.4 3 0 0 3 3 3 0 Ribbon-helix-helix domain zf-ISL3 PF14690.1 gi|20090558|ref|NP_616633.1| - 0.06 13.3 0.1 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.11 gi|20090558|ref|NP_616633.1| - 0.06 13.0 1.4 0.099 12.3 0.3 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Fer4_6 PF12837.2 gi|20090560|ref|NP_616635.1| - 4.9e-08 32.4 12.0 0.00017 21.3 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20090560|ref|NP_616635.1| - 8.7e-08 31.4 13.2 3.3e-05 23.2 2.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20090560|ref|NP_616635.1| - 7e-07 28.9 7.2 1.2e-06 28.1 5.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20090560|ref|NP_616635.1| - 1.8e-06 27.6 5.7 0.00015 21.5 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20090560|ref|NP_616635.1| - 2.2e-06 27.9 8.0 4e-06 27.1 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20090560|ref|NP_616635.1| - 4.5e-05 23.3 0.9 0.024 14.6 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20090560|ref|NP_616635.1| - 0.0001 22.4 8.4 0.00028 21.0 5.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20090560|ref|NP_616635.1| - 0.00011 22.8 11.9 0.0081 16.8 8.2 2.4 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|20090560|ref|NP_616635.1| - 0.00017 21.9 2.5 0.06 13.7 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20090560|ref|NP_616635.1| - 0.00022 21.2 10.8 0.078 13.3 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20090560|ref|NP_616635.1| - 0.0021 18.4 12.6 0.088 13.4 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20090560|ref|NP_616635.1| - 0.0024 17.7 9.9 0.14 12.1 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20090560|ref|NP_616635.1| - 0.0027 18.0 4.7 0.34 11.3 0.4 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Dehalogenase PF13486.1 gi|20090560|ref|NP_616635.1| - 0.14 11.5 0.0 0.41 10.0 0.0 1.6 1 1 0 1 1 1 0 Reductive dehalogenase subunit Fer4_13 PF13370.1 gi|20090560|ref|NP_616635.1| - 5.8 7.3 10.5 4.1 7.8 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Peptidase_U32 PF01136.14 gi|20090561|ref|NP_616636.1| - 2.3e-80 268.8 0.1 3e-80 268.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 GTP_EFTU_D2 PF03144.20 gi|20090561|ref|NP_616636.1| - 0.047 13.8 0.6 0.39 10.8 0.4 2.3 1 1 0 1 1 1 0 Elongation factor Tu domain 2 MCH PF02289.11 gi|20090562|ref|NP_616637.1| - 3.5e-159 528.8 0.4 3.9e-159 528.7 0.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Tautomerase_2 PF14552.1 gi|20090562|ref|NP_616637.1| - 0.15 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Tautomerase enzyme DUF2124 PF09897.4 gi|20090563|ref|NP_616638.1| - 3.2e-50 169.6 0.1 3.6e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Aminotran_1_2 PF00155.16 gi|20090564|ref|NP_616639.1| - 3.3e-61 207.2 0.0 3.8e-61 207.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|20090564|ref|NP_616639.1| - 0.00075 17.8 0.0 0.0011 17.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ThiS PF02597.15 gi|20090565|ref|NP_616640.1| - 5.3e-20 71.6 0.1 6e-20 71.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|20090565|ref|NP_616640.1| - 0.14 12.2 0.0 0.17 12.0 0.0 1.5 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) AFOR_C PF01314.13 gi|20090566|ref|NP_616641.1| - 1.5e-148 494.5 0.0 1.9e-148 494.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|20090566|ref|NP_616641.1| - 7.1e-80 267.1 0.1 1.9e-79 265.7 0.0 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ApbE PF02424.10 gi|20090567|ref|NP_616642.1| - 1.9e-21 76.5 8.4 2.5e-20 72.8 5.8 2.0 1 1 0 1 1 1 1 ApbE family XdhC_CoxI PF02625.11 gi|20090567|ref|NP_616642.1| - 0.34 10.5 4.2 0.27 10.8 0.3 2.5 3 0 0 3 3 3 0 XdhC and CoxI family PAS_3 PF08447.6 gi|20090568|ref|NP_616643.1| - 6.5e-20 71.0 0.0 1.4e-19 69.9 0.0 1.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|20090568|ref|NP_616643.1| - 5.7e-05 23.4 0.0 9.1e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 PAS domain DUF4065 PF13274.1 gi|20090568|ref|NP_616643.1| - 0.18 12.5 0.6 0.29 11.8 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4065) NosD PF05048.8 gi|20090569|ref|NP_616644.1| - 9.8e-28 96.8 59.6 5.6e-15 55.1 18.2 2.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20090569|ref|NP_616644.1| - 6.2e-20 71.5 55.2 6.3e-11 42.2 14.8 2.6 1 1 1 2 2 2 2 Right handed beta helix region PGDYG PF14083.1 gi|20090569|ref|NP_616644.1| - 0.016 15.5 0.0 0.044 14.1 0.0 1.7 1 0 0 1 1 1 0 PGDYG protein MS_channel PF00924.13 gi|20090570|ref|NP_616645.1| - 8.2e-53 178.8 0.6 1.1e-52 178.4 0.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF432 PF04254.8 gi|20090571|ref|NP_616646.1| - 3.3e-42 143.2 0.0 5.5e-42 142.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF432) CorA PF01544.13 gi|20090573|ref|NP_616648.1| - 4.6e-80 268.7 3.8 5.8e-80 268.4 2.6 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Acyl_transf_3 PF01757.17 gi|20090573|ref|NP_616648.1| - 0.01 14.7 2.7 0.013 14.3 1.9 1.1 1 0 0 1 1 1 0 Acyltransferase family T4_neck-protein PF11649.3 gi|20090573|ref|NP_616648.1| - 0.074 12.3 0.2 0.15 11.3 0.0 1.5 2 0 0 2 2 2 0 Virus neck protein T2SF PF00482.18 gi|20090573|ref|NP_616648.1| - 0.22 11.4 0.1 0.22 11.4 0.1 2.8 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F TM_helix PF05552.7 gi|20090574|ref|NP_616649.1| - 1.2e-31 108.0 37.2 1.1e-12 47.3 3.2 4.6 4 0 0 4 4 4 3 Conserved TM helix Fasciclin PF02469.17 gi|20090575|ref|NP_616650.1| - 2.1e-62 208.7 3.4 3.6e-31 107.8 0.1 2.8 2 0 0 2 2 2 2 Fasciclin domain DUF4430 PF14478.1 gi|20090575|ref|NP_616650.1| - 1.2e-18 66.8 9.7 2.5e-09 37.0 0.6 3.5 3 0 0 3 3 3 2 Domain of unknown function (DUF4430) MS_channel PF00924.13 gi|20090576|ref|NP_616651.1| - 5.4e-42 143.4 0.4 7.9e-42 142.9 0.3 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel MerC PF03203.9 gi|20090576|ref|NP_616651.1| - 0.43 10.9 6.3 3 8.2 1.3 2.2 1 1 0 2 2 2 0 MerC mercury resistance protein AMP-binding_C_2 PF14535.1 gi|20090577|ref|NP_616652.1| - 4.3e-24 84.3 0.3 2.2e-23 82.1 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|20090577|ref|NP_616652.1| - 2.5e-11 42.6 0.0 3.7e-11 42.0 0.0 1.3 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.8 gi|20090577|ref|NP_616652.1| - 0.043 12.3 0.0 0.15 10.5 0.0 1.7 2 0 0 2 2 2 0 GH3 auxin-responsive promoter POR PF01558.13 gi|20090578|ref|NP_616653.1| - 8.2e-40 136.5 0.1 1e-39 136.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|20090579|ref|NP_616654.1| - 3.2e-27 94.9 0.7 5.2e-27 94.2 0.5 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|20090579|ref|NP_616654.1| - 6.4e-17 61.8 0.0 1.1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|20090579|ref|NP_616654.1| - 5.6e-09 35.2 11.3 1.8e-05 24.1 0.9 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20090579|ref|NP_616654.1| - 3.7e-07 29.8 7.4 1.1e-06 28.3 5.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20090579|ref|NP_616654.1| - 1.1e-06 28.2 11.8 0.0026 17.5 0.9 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20090579|ref|NP_616654.1| - 2e-06 27.3 16.3 0.00071 19.3 1.1 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20090579|ref|NP_616654.1| - 9.6e-06 25.3 10.5 2.4e-05 24.0 5.8 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20090579|ref|NP_616654.1| - 0.00026 21.3 8.0 0.00026 21.3 5.5 2.4 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20090579|ref|NP_616654.1| - 0.0003 20.9 7.7 0.0003 20.9 5.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|20090579|ref|NP_616654.1| - 0.003 17.0 1.1 0.0048 16.4 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.19 gi|20090579|ref|NP_616654.1| - 0.0078 15.7 0.2 0.037 13.5 0.0 2.1 2 1 0 2 2 2 1 Transketolase, pyrimidine binding domain Fer4_8 PF13183.1 gi|20090579|ref|NP_616654.1| - 0.008 16.1 10.6 0.028 14.4 6.5 2.5 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20090579|ref|NP_616654.1| - 0.018 15.3 2.9 0.018 15.3 2.0 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20090579|ref|NP_616654.1| - 0.02 15.5 2.3 0.02 15.5 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|20090579|ref|NP_616654.1| - 0.033 14.7 11.8 0.31 11.6 1.3 3.1 2 1 1 3 3 2 0 4Fe-4S single cluster domain AAA_19 PF13245.1 gi|20090579|ref|NP_616654.1| - 0.06 13.1 0.8 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain Fer4_13 PF13370.1 gi|20090579|ref|NP_616654.1| - 0.14 12.5 8.7 3.3 8.1 1.9 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|20090579|ref|NP_616654.1| - 0.19 12.1 7.7 0.71 10.3 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20090579|ref|NP_616654.1| - 0.35 11.2 11.8 0.5 10.7 1.9 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain CENP-H PF05837.7 gi|20090580|ref|NP_616655.1| - 1 9.5 7.6 0.84 9.8 3.5 2.2 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Yip1 PF04893.12 gi|20090581|ref|NP_616656.1| - 4.1e-18 65.4 22.8 5.3e-18 65.1 15.8 1.1 1 0 0 1 1 1 1 Yip1 domain PKD PF00801.15 gi|20090582|ref|NP_616657.1| - 1.4e-16 59.9 5.4 3.7e-16 58.6 3.7 1.7 1 0 0 1 1 1 1 PKD domain DUF3688 PF12461.3 gi|20090582|ref|NP_616657.1| - 0.011 16.0 1.8 0.052 13.9 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3688) DUF3895 PF13034.1 gi|20090582|ref|NP_616657.1| - 0.058 12.8 0.0 0.22 11.0 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3895) Big_3_4 PF13754.1 gi|20090582|ref|NP_616657.1| - 0.11 12.7 5.0 0.31 11.4 2.9 2.2 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF295 PF03478.13 gi|20090582|ref|NP_616657.1| - 0.12 11.7 5.3 4.5 6.7 0.0 3.9 3 1 0 3 3 3 0 Protein of unknown function (DUF295) FAINT PF04385.10 gi|20090582|ref|NP_616657.1| - 0.84 9.5 16.5 0.34 10.8 0.1 5.6 5 2 1 7 7 7 0 Domain of unknown function, DUF529 NUMOD1 PF07453.8 gi|20090582|ref|NP_616657.1| - 4.4 7.2 11.2 6.8 6.6 0.0 4.7 6 0 0 6 6 6 0 NUMOD1 domain Yip1 PF04893.12 gi|20090583|ref|NP_616658.1| - 3.3e-22 78.7 16.4 4.1e-22 78.4 11.4 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|20090583|ref|NP_616658.1| - 0.18 11.4 13.3 0.92 9.1 9.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) LrgA PF03788.9 gi|20090583|ref|NP_616658.1| - 0.61 9.8 8.4 0.32 10.7 1.8 2.4 2 0 0 2 2 2 0 LrgA family RNase_PH_C PF03725.10 gi|20090584|ref|NP_616659.1| - 0.51 10.3 4.4 0.12 12.3 1.3 1.5 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 Methyltransf_18 PF12847.2 gi|20090585|ref|NP_616660.1| - 6.6e-18 65.3 0.0 1.2e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090585|ref|NP_616660.1| - 7.3e-17 61.3 0.0 8.9e-17 61.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090585|ref|NP_616660.1| - 8.6e-17 61.4 0.0 1.3e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090585|ref|NP_616660.1| - 1.2e-16 60.9 0.0 2e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090585|ref|NP_616660.1| - 7.7e-16 58.3 0.0 1.6e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090585|ref|NP_616660.1| - 1.6e-12 47.1 0.0 2.2e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|20090585|ref|NP_616660.1| - 2.2e-09 36.8 0.1 3.5e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|20090585|ref|NP_616660.1| - 2.3e-09 37.1 0.0 5e-09 36.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20090585|ref|NP_616660.1| - 3.4e-08 32.8 0.0 4.8e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|20090585|ref|NP_616660.1| - 4.4e-08 32.5 0.0 7e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.7 gi|20090585|ref|NP_616660.1| - 4.6e-07 29.3 0.0 9.6e-07 28.3 0.0 1.4 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.6 gi|20090585|ref|NP_616660.1| - 5.4e-07 29.2 0.0 7.1e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|20090585|ref|NP_616660.1| - 6.7e-07 29.3 0.0 9.3e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|20090585|ref|NP_616660.1| - 4.9e-06 25.9 0.0 6.2e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase GidB PF02527.10 gi|20090585|ref|NP_616660.1| - 6.2e-06 25.4 0.0 8.9e-06 24.9 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_16 PF10294.4 gi|20090585|ref|NP_616660.1| - 0.0011 18.4 0.0 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Rsm22 PF09243.5 gi|20090585|ref|NP_616660.1| - 0.0017 17.4 0.0 0.0025 16.8 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Spermine_synth PF01564.12 gi|20090585|ref|NP_616660.1| - 0.002 17.0 0.0 0.014 14.3 0.0 1.9 1 1 0 1 1 1 1 Spermine/spermidine synthase PrmA PF06325.8 gi|20090585|ref|NP_616660.1| - 0.0022 17.1 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|20090585|ref|NP_616660.1| - 0.0066 15.4 0.0 0.0096 14.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|20090585|ref|NP_616660.1| - 0.015 14.3 0.0 0.034 13.1 0.0 1.5 1 1 0 1 1 1 0 Putative methyltransferase tRNA-synt_1_2 PF13603.1 gi|20090585|ref|NP_616660.1| - 0.017 14.4 0.2 0.027 13.7 0.1 1.3 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 DUF938 PF06080.7 gi|20090585|ref|NP_616660.1| - 0.056 12.9 0.0 0.18 11.3 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_5 PF01795.14 gi|20090585|ref|NP_616660.1| - 0.11 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family DUF3581 PF12119.3 gi|20090586|ref|NP_616661.1| - 0.059 12.5 0.1 0.068 12.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3581) LcrG PF07216.7 gi|20090586|ref|NP_616661.1| - 0.79 9.7 4.7 0.93 9.5 3.2 1.3 1 1 0 1 1 1 0 LcrG protein Malic_M PF03949.10 gi|20090587|ref|NP_616662.1| - 7.9e-66 222.2 2.2 1e-65 221.8 1.5 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|20090587|ref|NP_616662.1| - 2.4e-32 111.9 0.1 5.7e-30 104.2 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain ThiF PF00899.16 gi|20090587|ref|NP_616662.1| - 0.16 11.8 2.4 0.97 9.2 0.2 2.7 3 0 0 3 3 3 0 ThiF family Prok-JAB PF14464.1 gi|20090588|ref|NP_616663.1| - 1.2e-10 40.8 0.0 1.7e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|20090588|ref|NP_616663.1| - 0.0015 18.2 0.0 0.0029 17.3 0.0 1.4 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|20090588|ref|NP_616663.1| - 0.015 14.9 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|20090588|ref|NP_616663.1| - 0.086 12.7 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 BssC_TutF PF08201.6 gi|20090589|ref|NP_616664.1| - 0.63 9.5 4.0 0.21 11.1 0.9 1.7 2 1 0 2 2 2 0 BssC/TutF protein NosD PF05048.8 gi|20090590|ref|NP_616665.1| - 1.6e-61 207.5 67.3 1.6e-57 194.3 30.4 5.1 2 2 2 5 5 5 2 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|20090590|ref|NP_616665.1| - 6.7e-21 73.8 13.3 2.8e-15 55.8 0.7 2.6 2 0 0 2 2 2 2 PKD domain Beta_helix PF13229.1 gi|20090590|ref|NP_616665.1| - 1.5e-19 70.2 89.6 5.6e-14 52.2 30.8 6.3 2 2 2 4 4 4 2 Right handed beta helix region PD40 PF07676.7 gi|20090590|ref|NP_616665.1| - 0.00022 20.7 7.5 1.5 8.6 0.0 5.9 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat Kelch_4 PF13418.1 gi|20090590|ref|NP_616665.1| - 0.0007 19.3 7.2 13 5.6 0.1 6.7 7 0 0 7 7 7 1 Galactose oxidase, central domain CHASE4 PF05228.8 gi|20090591|ref|NP_616666.1| - 2.2e-44 150.9 0.2 2.2e-43 147.6 0.0 2.5 2 1 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.21 gi|20090591|ref|NP_616666.1| - 1e-27 96.0 0.0 1.8e-27 95.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20090591|ref|NP_616666.1| - 1.4e-19 69.8 0.0 3.2e-19 68.6 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20090591|ref|NP_616666.1| - 3.2e-12 46.4 0.0 7.9e-12 45.1 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|20090591|ref|NP_616666.1| - 8e-12 45.4 0.0 2.9e-11 43.6 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|20090591|ref|NP_616666.1| - 5.6e-07 29.7 0.0 1.8e-06 28.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|20090591|ref|NP_616666.1| - 9.6e-05 22.1 0.0 0.00029 20.5 0.0 1.9 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|20090591|ref|NP_616666.1| - 0.00013 21.5 0.0 0.00039 20.0 0.0 1.9 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|20090591|ref|NP_616666.1| - 0.00032 20.4 0.0 0.00066 19.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|20090591|ref|NP_616666.1| - 0.0021 17.7 0.0 0.0054 16.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|20090591|ref|NP_616666.1| - 0.0055 16.8 0.0 0.0055 16.8 0.0 1.9 2 0 0 2 2 1 1 HAMP domain PAS_8 PF13188.1 gi|20090591|ref|NP_616666.1| - 0.02 14.7 0.0 0.076 12.9 0.0 2.0 1 0 0 1 1 1 0 PAS domain TerB-N PF13208.1 gi|20090591|ref|NP_616666.1| - 0.16 11.4 1.8 0.29 10.5 0.1 2.2 3 0 0 3 3 3 0 TerB-N Pcc1 PF09341.5 gi|20090592|ref|NP_616667.1| - 9e-20 70.4 0.3 1e-19 70.3 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 IRS PF02174.12 gi|20090592|ref|NP_616667.1| - 0.12 11.9 0.1 0.29 10.7 0.0 1.6 1 1 1 2 2 2 0 PTB domain (IRS-1 type) Brix PF04427.13 gi|20090593|ref|NP_616668.1| - 3e-07 30.2 0.0 4.5e-07 29.7 0.0 1.3 1 1 0 1 1 1 1 Brix domain FixG_C PF11614.3 gi|20090594|ref|NP_616669.1| - 0.008 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 IG-like fold at C-terminal of FixG, putative oxidoreductase NPCBM_assoc PF10633.4 gi|20090594|ref|NP_616669.1| - 0.017 15.1 0.1 0.048 13.7 0.0 1.9 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1034 PF06280.7 gi|20090594|ref|NP_616669.1| - 2.6 8.5 6.5 0.43 11.0 0.2 2.6 3 1 0 3 3 3 0 Fn3-like domain (DUF1034) DUF2117 PF09890.4 gi|20090595|ref|NP_616670.1| - 9.6e-80 266.8 0.0 1.3e-79 266.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) MacB_PCD PF12704.2 gi|20090596|ref|NP_616671.1| - 5e-29 101.5 0.8 6.8e-29 101.0 0.0 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20090596|ref|NP_616671.1| - 8.9e-24 83.5 8.1 8.9e-24 83.5 5.6 2.1 2 0 0 2 2 2 1 FtsX-like permease family Yip1 PF04893.12 gi|20090596|ref|NP_616671.1| - 1.8 8.0 9.7 3 7.2 5.0 2.2 2 1 0 2 2 2 0 Yip1 domain DUF3344 PF11824.3 gi|20090597|ref|NP_616672.1| - 5.1e-51 173.6 0.3 5.9e-51 173.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) ABC_tran PF00005.22 gi|20090599|ref|NP_616674.1| - 1.3e-63 213.3 0.0 1.5e-31 109.5 0.0 3.1 3 1 1 4 4 3 2 ABC transporter AAA_21 PF13304.1 gi|20090599|ref|NP_616674.1| - 3.8e-15 56.6 4.4 6.1e-06 26.3 0.0 4.4 3 1 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|20090599|ref|NP_616674.1| - 5.5e-10 38.8 0.0 0.0011 18.2 0.0 3.3 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|20090599|ref|NP_616674.1| - 8.1e-09 34.8 0.0 0.00017 20.8 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|20090599|ref|NP_616674.1| - 1.9e-08 33.7 0.0 0.0015 18.0 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20090599|ref|NP_616674.1| - 3.4e-08 33.6 2.7 0.00014 21.9 0.2 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|20090599|ref|NP_616674.1| - 4.8e-07 29.9 3.6 0.051 13.7 0.0 3.9 3 1 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|20090599|ref|NP_616674.1| - 2.3e-06 27.1 0.1 0.04 13.3 0.0 3.2 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|20090599|ref|NP_616674.1| - 4.4e-06 27.1 1.2 0.037 14.3 0.0 2.9 3 1 0 3 3 2 2 AAA domain UPF0079 PF02367.12 gi|20090599|ref|NP_616674.1| - 2.2e-05 24.0 0.2 0.1 12.2 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|20090599|ref|NP_616674.1| - 2.6e-05 23.4 0.0 0.014 14.5 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|20090599|ref|NP_616674.1| - 3e-05 24.2 0.1 0.13 12.4 0.0 3.6 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|20090599|ref|NP_616674.1| - 3.5e-05 23.6 0.0 0.25 11.2 0.1 3.6 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|20090599|ref|NP_616674.1| - 4.5e-05 22.6 0.0 1.9 7.4 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_33 PF13671.1 gi|20090599|ref|NP_616674.1| - 0.00011 22.0 0.2 0.2 11.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|20090599|ref|NP_616674.1| - 0.00021 20.9 1.4 0.58 9.7 0.0 3.2 3 0 0 3 3 2 2 NACHT domain Rad17 PF03215.10 gi|20090599|ref|NP_616674.1| - 0.00028 19.7 0.0 0.00046 18.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|20090599|ref|NP_616674.1| - 0.00034 20.3 0.7 0.061 13.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|20090599|ref|NP_616674.1| - 0.0004 21.1 0.9 0.41 11.4 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|20090599|ref|NP_616674.1| - 0.00056 20.2 1.6 0.1 12.9 0.3 3.9 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|20090599|ref|NP_616674.1| - 0.00075 19.1 0.1 0.23 11.2 0.0 2.8 2 0 0 2 2 2 1 Part of AAA domain IstB_IS21 PF01695.12 gi|20090599|ref|NP_616674.1| - 0.0014 18.1 0.2 4 6.8 0.0 3.4 4 0 0 4 4 4 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|20090599|ref|NP_616674.1| - 0.0016 18.5 0.0 0.34 11.1 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_10 PF12846.2 gi|20090599|ref|NP_616674.1| - 0.0027 17.2 0.3 1.6 8.1 0.0 3.0 3 1 1 4 4 3 1 AAA-like domain AAA_30 PF13604.1 gi|20090599|ref|NP_616674.1| - 0.0031 17.1 0.0 1.5 8.3 0.0 2.8 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|20090599|ref|NP_616674.1| - 0.0031 16.6 0.0 0.28 10.2 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|20090599|ref|NP_616674.1| - 0.0033 17.3 0.4 0.57 10.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20090599|ref|NP_616674.1| - 0.0034 17.2 0.1 1.7 8.5 0.0 3.3 4 0 0 4 4 4 1 AAA domain NB-ARC PF00931.17 gi|20090599|ref|NP_616674.1| - 0.0036 16.2 0.1 2.5 6.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain ATP-synt_ab PF00006.20 gi|20090599|ref|NP_616674.1| - 0.0063 16.0 0.0 0.74 9.2 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|20090599|ref|NP_616674.1| - 0.0069 15.3 0.0 2.5 6.9 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|20090599|ref|NP_616674.1| - 0.012 15.3 0.0 0.73 9.4 0.0 2.4 2 0 0 2 2 2 0 Archaeal ATPase SRP54 PF00448.17 gi|20090599|ref|NP_616674.1| - 0.015 14.7 0.1 0.34 10.3 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|20090599|ref|NP_616674.1| - 0.015 14.7 0.1 1.9 8.0 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|20090599|ref|NP_616674.1| - 0.015 14.9 0.0 4.5 6.9 0.0 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|20090599|ref|NP_616674.1| - 0.019 14.5 0.4 7 6.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain KaiC PF06745.8 gi|20090599|ref|NP_616674.1| - 0.03 13.4 0.7 6.9 5.7 0.0 3.2 4 0 0 4 4 3 0 KaiC ABC_ATPase PF09818.4 gi|20090599|ref|NP_616674.1| - 0.048 12.2 0.4 5.4 5.4 0.0 3.3 4 0 0 4 4 4 0 Predicted ATPase of the ABC class DUF815 PF05673.8 gi|20090599|ref|NP_616674.1| - 0.069 12.0 0.1 0.17 10.8 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF815) NTPase_1 PF03266.10 gi|20090599|ref|NP_616674.1| - 0.073 12.7 0.1 6 6.5 0.0 3.1 3 0 0 3 3 3 0 NTPase Sigma54_activ_2 PF14532.1 gi|20090599|ref|NP_616674.1| - 0.1 12.6 0.2 6.3 6.8 0.0 2.8 2 0 0 2 2 2 0 Sigma-54 interaction domain APS_kinase PF01583.15 gi|20090599|ref|NP_616674.1| - 0.13 11.9 0.1 7.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_13 PF13166.1 gi|20090599|ref|NP_616674.1| - 0.14 10.5 0.0 3.6 5.9 0.0 2.7 4 0 0 4 4 4 0 AAA domain CPT PF07931.7 gi|20090599|ref|NP_616674.1| - 0.16 11.6 0.0 0.41 10.2 0.0 1.7 2 0 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein Miro PF08477.8 gi|20090599|ref|NP_616674.1| - 0.19 12.2 0.1 22 5.5 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein MMR_HSR1 PF01926.18 gi|20090599|ref|NP_616674.1| - 0.23 11.4 0.7 8.2 6.4 0.0 2.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase G-alpha PF00503.15 gi|20090599|ref|NP_616674.1| - 0.23 10.0 0.0 4.1 5.9 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit CbiQ PF02361.11 gi|20090600|ref|NP_616675.1| - 1.1e-31 110.0 4.9 1.7e-31 109.5 3.4 1.3 1 0 0 1 1 1 1 Cobalt transport protein ABC2_membrane_5 PF13346.1 gi|20090600|ref|NP_616675.1| - 6.6 5.9 9.8 0.17 11.1 1.7 2.0 2 1 1 3 3 3 0 ABC-2 family transporter protein DUF3344 PF11824.3 gi|20090601|ref|NP_616676.1| - 4.9e-72 242.5 3.5 6.4e-72 242.1 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) DUF3344 PF11824.3 gi|20090602|ref|NP_616677.1| - 1.6e-48 165.4 1.4 2.6e-48 164.7 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) CARDB PF07705.6 gi|20090602|ref|NP_616677.1| - 9.3e-38 128.3 1.6 1e-18 67.2 0.1 2.9 3 0 0 3 3 3 2 CARDB CBM_6 PF03422.10 gi|20090602|ref|NP_616677.1| - 0.17 12.0 2.4 18 5.4 0.1 3.0 3 0 0 3 3 3 0 Carbohydrate binding module (family 6) DUF3344 PF11824.3 gi|20090603|ref|NP_616678.1| - 3.1e-71 239.9 3.0 3.6e-71 239.7 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) ABC_tran PF00005.22 gi|20090604|ref|NP_616679.1| - 1.1e-32 113.1 0.0 1.5e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090604|ref|NP_616679.1| - 5.1e-11 43.0 0.0 7.6e-05 22.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20090604|ref|NP_616679.1| - 7.7e-08 31.8 0.3 9.5e-06 24.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20090604|ref|NP_616679.1| - 0.00015 21.8 0.0 0.0007 19.6 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|20090604|ref|NP_616679.1| - 0.0002 20.8 0.1 0.055 12.9 0.2 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|20090604|ref|NP_616679.1| - 0.00024 20.5 0.0 0.00062 19.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|20090604|ref|NP_616679.1| - 0.00036 19.7 0.0 0.00059 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|20090604|ref|NP_616679.1| - 0.0011 18.1 0.0 0.53 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|20090604|ref|NP_616679.1| - 0.0095 16.0 0.2 0.097 12.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|20090604|ref|NP_616679.1| - 0.023 14.5 0.4 0.052 13.4 0.3 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|20090604|ref|NP_616679.1| - 0.028 14.3 0.0 0.27 11.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|20090604|ref|NP_616679.1| - 0.031 13.6 0.0 0.1 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|20090604|ref|NP_616679.1| - 0.055 12.3 0.1 0.55 9.0 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain RNA12 PF10443.4 gi|20090604|ref|NP_616679.1| - 0.087 11.3 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein Arch_ATPase PF01637.13 gi|20090604|ref|NP_616679.1| - 0.096 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|20090604|ref|NP_616679.1| - 0.11 12.4 0.5 0.4 10.6 0.3 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|20090604|ref|NP_616679.1| - 0.12 13.1 0.0 0.25 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3344 PF11824.3 gi|20090605|ref|NP_616680.1| - 1.2e-70 237.9 13.7 1.2e-70 237.9 9.5 3.3 5 0 0 5 5 5 1 Protein of unknown function (DUF3344) NosD PF05048.8 gi|20090605|ref|NP_616680.1| - 1.4e-34 119.3 31.5 1.4e-34 119.3 21.8 3.1 3 1 0 3 3 3 1 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|20090605|ref|NP_616680.1| - 1.4e-33 114.4 29.3 4.1e-18 64.9 3.8 4.0 4 0 0 4 4 4 2 PKD domain CARDB PF07705.6 gi|20090605|ref|NP_616680.1| - 3.6e-22 78.3 6.9 3.6e-22 78.3 4.8 4.2 4 0 0 4 4 4 1 CARDB Beta_helix PF13229.1 gi|20090605|ref|NP_616680.1| - 2e-10 40.6 26.0 2e-10 40.6 18.0 4.3 3 2 1 4 4 4 1 Right handed beta helix region EF-hand_1 PF00036.27 gi|20090605|ref|NP_616680.1| - 0.0076 15.4 1.4 0.0076 15.4 0.9 2.7 4 0 0 4 4 4 1 EF hand EF-hand_6 PF13405.1 gi|20090605|ref|NP_616680.1| - 0.015 15.1 0.7 0.08 12.8 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain EF-hand_8 PF13833.1 gi|20090605|ref|NP_616680.1| - 0.16 11.6 2.2 0.37 10.4 1.5 1.7 1 0 0 1 1 1 0 EF-hand domain pair DUF3344 PF11824.3 gi|20090606|ref|NP_616681.1| - 4.1e-124 413.3 52.1 8.1e-66 222.1 14.6 5.0 5 1 1 6 6 6 2 Protein of unknown function (DUF3344) PKD PF00801.15 gi|20090606|ref|NP_616681.1| - 3.1e-21 74.9 41.3 9.8e-17 60.4 5.6 5.0 5 0 0 5 5 5 2 PKD domain CARDB PF07705.6 gi|20090606|ref|NP_616681.1| - 2.9e-19 68.9 6.6 2.9e-19 68.9 4.6 5.4 5 1 1 6 6 6 1 CARDB BNR PF02012.15 gi|20090606|ref|NP_616681.1| - 0.0063 16.1 0.6 83 3.6 0.0 4.7 3 0 0 3 3 3 0 BNR/Asp-box repeat Tissue_fac PF01108.12 gi|20090606|ref|NP_616681.1| - 0.055 13.2 6.4 17 5.1 0.0 4.9 6 0 0 6 6 6 0 Tissue factor DUF348 PF03990.9 gi|20090606|ref|NP_616681.1| - 0.27 10.8 2.8 51 3.5 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF348) DUF3344 PF11824.3 gi|20090607|ref|NP_616682.1| - 2.4e-68 230.4 18.2 2.4e-68 230.4 12.6 3.9 4 0 0 4 4 4 1 Protein of unknown function (DUF3344) PKD PF00801.15 gi|20090607|ref|NP_616682.1| - 1.8e-40 136.5 36.8 1.3e-16 60.1 4.8 4.6 4 0 0 4 4 4 3 PKD domain NosD PF05048.8 gi|20090607|ref|NP_616682.1| - 8.7e-39 133.0 28.7 8.7e-39 133.0 19.9 4.4 4 1 0 5 5 5 1 Periplasmic copper-binding protein (NosD) CARDB PF07705.6 gi|20090607|ref|NP_616682.1| - 2.3e-19 69.2 7.5 2.3e-19 69.2 5.2 5.2 4 1 0 4 4 4 1 CARDB Beta_helix PF13229.1 gi|20090607|ref|NP_616682.1| - 1.1e-09 38.1 21.8 1.1e-09 38.1 15.1 4.6 3 2 0 3 3 3 1 Right handed beta helix region EF-hand_1 PF00036.27 gi|20090607|ref|NP_616682.1| - 0.0079 15.4 1.4 0.0079 15.4 1.0 3.8 6 0 0 6 6 6 1 EF hand DUF1727 PF08353.5 gi|20090607|ref|NP_616682.1| - 0.071 12.7 0.5 6.1 6.4 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF1727) EF-hand_6 PF13405.1 gi|20090607|ref|NP_616682.1| - 0.94 9.5 9.5 0.083 12.8 0.2 3.5 4 0 0 4 4 4 0 EF-hand domain EF-hand_8 PF13833.1 gi|20090607|ref|NP_616682.1| - 6.1 6.5 11.2 0.38 10.3 1.5 3.0 3 0 0 3 3 3 0 EF-hand domain pair DDE_Tnp_1 PF01609.16 gi|20090608|ref|NP_616683.1| - 0.0033 16.9 0.1 0.0043 16.6 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|20090608|ref|NP_616683.1| - 0.08 13.1 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Transposase DDE domain DUF3344 PF11824.3 gi|20090609|ref|NP_616684.1| - 6.7e-52 176.5 16.8 6.7e-52 176.5 11.6 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3344) DUF11 PF01345.13 gi|20090610|ref|NP_616685.1| - 0.0015 18.5 0.0 0.088 12.8 0.1 2.7 2 0 0 2 2 2 1 Domain of unknown function DUF11 DUF4139 PF13598.1 gi|20090610|ref|NP_616685.1| - 0.13 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) DUF3344 PF11824.3 gi|20090611|ref|NP_616686.1| - 1.7e-71 240.8 11.3 2e-71 240.5 4.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3344) CARDB PF07705.6 gi|20090611|ref|NP_616686.1| - 9.3e-24 83.4 3.6 9.6e-24 83.3 0.1 2.8 2 1 0 2 2 2 1 CARDB Metallopep PF12044.3 gi|20090611|ref|NP_616686.1| - 0.12 10.7 0.0 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 Putative peptidase family Glucodextran_B PF09136.5 gi|20090611|ref|NP_616686.1| - 0.2 11.8 2.2 0.7 10.0 0.2 2.8 3 1 1 4 4 4 0 Glucodextranase, domain B Cadherin-like PF12733.2 gi|20090611|ref|NP_616686.1| - 7.2 6.9 9.5 1.1 9.5 1.4 3.4 4 2 0 4 4 4 0 Cadherin-like beta sandwich domain DUF3344 PF11824.3 gi|20090612|ref|NP_616687.1| - 2.4e-72 243.5 15.3 2.4e-72 243.5 10.6 3.7 3 1 0 3 3 3 1 Protein of unknown function (DUF3344) PKD PF00801.15 gi|20090612|ref|NP_616687.1| - 1.4e-61 204.1 62.6 5.8e-16 57.9 4.5 6.4 6 0 0 6 6 6 5 PKD domain CARDB PF07705.6 gi|20090612|ref|NP_616687.1| - 2.2e-21 75.8 6.3 2.2e-21 75.8 4.4 6.0 6 1 0 6 6 6 2 CARDB EF-hand_1 PF00036.27 gi|20090612|ref|NP_616687.1| - 0.007 15.5 1.4 0.007 15.5 1.0 4.8 6 0 0 6 6 6 1 EF hand EF-hand_6 PF13405.1 gi|20090612|ref|NP_616687.1| - 9.7 6.3 16.4 0.074 12.9 0.2 4.2 5 0 0 5 5 5 0 EF-hand domain PKD PF00801.15 gi|20090613|ref|NP_616688.1| - 6.3e-262 845.9 281.0 1.1e-17 63.4 4.6 21.3 20 0 0 20 20 20 18 PKD domain DUF3344 PF11824.3 gi|20090613|ref|NP_616688.1| - 3.4e-135 449.6 34.4 4.2e-77 259.1 9.3 8.9 9 1 0 9 9 6 2 Protein of unknown function (DUF3344) PQQ_3 PF13570.1 gi|20090613|ref|NP_616688.1| - 4.7e-73 239.6 27.7 7e-09 35.6 0.1 11.5 8 0 0 8 8 8 8 PQQ-like domain DUF2341 PF10102.4 gi|20090613|ref|NP_616688.1| - 5.5e-56 186.7 21.4 1.3e-19 70.1 0.1 7.2 6 0 0 6 6 5 3 Domain of unknown function (DUF2341) PQQ_2 PF13360.1 gi|20090613|ref|NP_616688.1| - 5.4e-45 153.7 7.3 1.8e-11 43.9 0.1 6.3 3 1 3 6 6 6 4 PQQ-like domain PQQ PF01011.16 gi|20090613|ref|NP_616688.1| - 2.4e-28 96.2 21.5 0.00024 20.4 0.2 9.6 8 0 0 8 8 8 7 PQQ enzyme repeat CARDB PF07705.6 gi|20090613|ref|NP_616688.1| - 8.7e-19 67.4 3.7 8.7e-19 67.4 2.6 12.1 14 3 4 18 18 17 1 CARDB Big_2 PF02368.13 gi|20090613|ref|NP_616688.1| - 4.8e-14 52.0 20.1 6e-12 45.2 5.5 10.8 13 2 1 14 14 10 2 Bacterial Ig-like domain (group 2) EF-hand_1 PF00036.27 gi|20090613|ref|NP_616688.1| - 0.007 15.5 1.4 0.03 13.6 0.9 2.2 1 0 0 1 1 1 1 EF hand EF-hand_6 PF13405.1 gi|20090613|ref|NP_616688.1| - 0.042 13.7 0.3 0.31 11.0 0.2 2.5 1 0 0 1 1 1 0 EF-hand domain EF-hand_8 PF13833.1 gi|20090613|ref|NP_616688.1| - 0.67 9.6 2.2 1.4 8.5 1.5 1.6 1 0 0 1 1 1 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|20090613|ref|NP_616688.1| - 0.94 8.9 0.7 3.8 7.0 0.5 2.1 1 0 0 1 1 1 0 EF hand NikR_C PF08753.6 gi|20090614|ref|NP_616689.1| - 8e-31 105.7 0.6 1e-30 105.3 0.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|20090614|ref|NP_616689.1| - 5.1e-08 32.4 0.0 1.4e-07 31.1 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PKD PF00801.15 gi|20090615|ref|NP_616690.1| - 1.6e-61 203.9 71.6 3e-18 65.3 6.0 7.7 7 1 0 7 7 7 4 PKD domain CARDB PF07705.6 gi|20090615|ref|NP_616690.1| - 1e-24 86.4 2.2 1e-24 86.4 1.5 6.3 4 1 1 5 5 5 1 CARDB Y_Y_Y PF07495.8 gi|20090615|ref|NP_616690.1| - 3.9e-05 23.3 16.2 3.5 7.4 0.2 5.7 5 0 0 5 5 5 4 Y_Y_Y domain SSB PF00436.20 gi|20090615|ref|NP_616690.1| - 0.0094 15.8 7.7 5.7 6.8 0.1 4.4 4 0 0 4 4 4 3 Single-strand binding protein family RED_C PF07807.6 gi|20090616|ref|NP_616691.1| - 0.038 14.1 0.4 0.12 12.6 0.3 1.8 1 0 0 1 1 1 0 RED-like protein C-terminal region DUF3344 PF11824.3 gi|20090617|ref|NP_616692.1| - 1.3e-179 595.3 83.1 1.7e-71 240.7 10.6 4.7 5 0 0 5 5 5 3 Protein of unknown function (DUF3344) PKD PF00801.15 gi|20090617|ref|NP_616692.1| - 7.3e-60 198.6 57.3 1.8e-17 62.7 5.1 6.1 5 0 0 5 5 5 4 PKD domain CARDB PF07705.6 gi|20090617|ref|NP_616692.1| - 1.4e-38 131.0 21.6 1e-20 73.6 5.3 6.5 6 1 1 7 7 7 2 CARDB EF-hand_6 PF13405.1 gi|20090617|ref|NP_616692.1| - 0.014 15.2 3.0 0.13 12.2 0.2 3.1 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|20090617|ref|NP_616692.1| - 0.056 12.7 8.2 0.012 14.8 1.0 3.0 3 0 0 3 3 3 0 EF hand EF-hand_8 PF13833.1 gi|20090617|ref|NP_616692.1| - 1.8 8.2 6.4 0.58 9.8 1.5 2.3 2 0 0 2 2 2 0 EF-hand domain pair DUF3344 PF11824.3 gi|20090618|ref|NP_616693.1| - 6.8e-127 422.4 43.1 5.1e-72 242.5 10.0 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF3344) PKD PF00801.15 gi|20090618|ref|NP_616693.1| - 2.7e-24 84.6 25.0 8.6e-13 47.8 3.5 4.2 3 0 0 3 3 3 2 PKD domain CARDB PF07705.6 gi|20090618|ref|NP_616693.1| - 6.4e-21 74.3 7.6 6.4e-21 74.3 5.3 4.3 5 2 0 5 5 5 1 CARDB EF-hand_6 PF13405.1 gi|20090618|ref|NP_616693.1| - 1.8 8.6 3.6 10 6.2 0.3 2.9 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|20090618|ref|NP_616693.1| - 2.1 7.8 3.6 5.7 6.5 0.3 2.6 2 0 0 2 2 2 0 EF hand EF-hand_5 PF13202.1 gi|20090618|ref|NP_616693.1| - 6.2 6.3 8.1 4.9 6.6 1.6 2.6 2 0 0 2 2 2 0 EF hand DUF3344 PF11824.3 gi|20090619|ref|NP_616694.1| - 3.4e-162 538.2 35.4 5.5e-85 285.0 11.4 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3344) CARDB PF07705.6 gi|20090619|ref|NP_616694.1| - 3.9e-21 75.0 2.5 3.9e-21 75.0 1.7 3.8 3 0 0 3 3 3 1 CARDB MYCBPAP PF14646.1 gi|20090619|ref|NP_616694.1| - 0.03 13.0 0.0 0.045 12.4 0.0 1.1 1 0 0 1 1 1 0 MYCBP-associated protein family YfhE PF14152.1 gi|20090619|ref|NP_616694.1| - 0.19 11.6 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 YfhE-like protein CDC45 PF02724.9 gi|20090619|ref|NP_616694.1| - 0.35 8.8 2.7 0.51 8.3 1.8 1.1 1 0 0 1 1 1 0 CDC45-like protein Nop14 PF04147.7 gi|20090619|ref|NP_616694.1| - 8.9 4.0 7.7 12 3.6 5.4 1.1 1 0 0 1 1 1 0 Nop14-like family DUF1638 PF07796.6 gi|20090620|ref|NP_616695.1| - 5.9e-34 117.1 0.0 7.5e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) RNA_pol_L PF01193.19 gi|20090620|ref|NP_616695.1| - 0.11 11.6 0.0 0.23 10.6 0.0 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1638 PF07796.6 gi|20090621|ref|NP_616696.1| - 9.4e-41 139.2 0.0 1.2e-40 138.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) TetR_N PF00440.18 gi|20090622|ref|NP_616697.1| - 1.4e-09 37.4 0.1 7.8e-09 35.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|20090622|ref|NP_616697.1| - 0.0017 17.7 0.0 0.0054 16.1 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20090622|ref|NP_616697.1| - 0.005 16.3 0.0 0.0099 15.4 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) GerE PF00196.14 gi|20090622|ref|NP_616697.1| - 0.096 12.0 0.0 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|20090622|ref|NP_616697.1| - 0.11 12.2 0.0 0.47 10.1 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain FMN_red PF03358.10 gi|20090623|ref|NP_616698.1| - 9.5e-15 54.4 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20090623|ref|NP_616698.1| - 0.015 14.7 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin-like fold Nitroreductase PF00881.19 gi|20090624|ref|NP_616699.1| - 2.3e-34 118.6 0.0 3.1e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|20090624|ref|NP_616699.1| - 0.00034 19.8 0.1 0.023 13.8 0.1 2.7 1 1 1 2 2 2 2 Putative TM nitroreductase DNA_RNApol_7kD PF03604.8 gi|20090625|ref|NP_616700.1| - 1.4e-09 37.2 8.7 2.1e-09 36.6 6.0 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|20090625|ref|NP_616700.1| - 3.8e-06 26.2 8.0 0.00012 21.4 1.6 1.5 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|20090625|ref|NP_616700.1| - 0.00021 20.5 1.4 0.00026 20.2 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20090625|ref|NP_616700.1| - 0.00029 19.9 0.4 0.048 12.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|20090625|ref|NP_616700.1| - 0.00079 19.0 0.5 0.00079 19.0 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|20090625|ref|NP_616700.1| - 0.0021 18.0 4.3 0.013 15.5 0.5 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPXG PF14255.1 gi|20090625|ref|NP_616700.1| - 0.003 17.3 1.9 0.016 15.0 0.1 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG OrfB_Zn_ribbon PF07282.6 gi|20090625|ref|NP_616700.1| - 0.0031 17.1 2.4 0.007 16.0 1.6 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain DUF951 PF06107.6 gi|20090625|ref|NP_616700.1| - 0.0039 16.6 3.7 0.087 12.3 0.2 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) Zn_Tnp_IS1595 PF12760.2 gi|20090625|ref|NP_616700.1| - 0.0081 15.9 2.2 0.24 11.2 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|20090625|ref|NP_616700.1| - 0.0095 15.6 1.9 1.1 8.9 0.0 2.0 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 CpXC PF14353.1 gi|20090625|ref|NP_616700.1| - 0.0096 15.8 2.4 0.81 9.6 0.1 2.0 1 1 1 2 2 2 2 CpXC protein zinc_ribbon_5 PF13719.1 gi|20090625|ref|NP_616700.1| - 0.011 15.3 3.6 0.19 11.3 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20090625|ref|NP_616700.1| - 0.015 15.0 4.1 0.31 10.7 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|20090625|ref|NP_616700.1| - 0.02 14.7 1.0 0.031 14.0 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|20090625|ref|NP_616700.1| - 0.027 14.1 2.7 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_6 PF14599.1 gi|20090625|ref|NP_616700.1| - 0.035 13.9 1.6 0.045 13.5 1.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon DUF329 PF03884.9 gi|20090625|ref|NP_616700.1| - 0.042 13.3 2.2 2.4 7.7 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-RING_3 PF14369.1 gi|20090625|ref|NP_616700.1| - 0.045 13.7 0.8 0.063 13.2 0.5 1.3 1 0 0 1 1 1 0 zinc-finger zf-AN1 PF01428.11 gi|20090625|ref|NP_616700.1| - 0.046 13.5 1.5 0.12 12.2 1.1 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Di19 PF05605.7 gi|20090625|ref|NP_616700.1| - 0.065 13.3 0.3 0.52 10.4 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding C1_1 PF00130.17 gi|20090625|ref|NP_616700.1| - 0.067 12.9 1.6 0.1 12.3 1.1 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|20090625|ref|NP_616700.1| - 0.075 13.4 1.1 2.4 8.6 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2072 PF09845.4 gi|20090625|ref|NP_616700.1| - 0.076 12.9 1.0 0.073 13.0 0.7 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) FANCL_C PF11793.3 gi|20090625|ref|NP_616700.1| - 0.081 12.9 1.7 0.62 10.0 0.1 2.0 1 1 1 2 2 2 0 FANCL C-terminal domain Ogr_Delta PF04606.7 gi|20090625|ref|NP_616700.1| - 0.089 12.4 1.6 0.79 9.4 0.1 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2197 PF09963.4 gi|20090625|ref|NP_616700.1| - 0.19 11.7 2.4 2.6 8.0 0.3 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Cys_rich_KTR PF14205.1 gi|20090625|ref|NP_616700.1| - 0.2 11.1 5.1 0.76 9.2 0.3 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR DiS_P_DiS PF06750.8 gi|20090625|ref|NP_616700.1| - 0.21 11.4 2.7 5.9 6.7 0.2 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-LITAF-like PF10601.4 gi|20090625|ref|NP_616700.1| - 0.21 11.4 2.3 4.4 7.2 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DUF2752 PF10825.3 gi|20090625|ref|NP_616700.1| - 0.23 11.5 0.1 0.23 11.5 0.1 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF2752) A2L_zn_ribbon PF08792.5 gi|20090625|ref|NP_616700.1| - 0.24 10.9 1.9 5 6.7 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Ribosomal_S27e PF01667.12 gi|20090625|ref|NP_616700.1| - 0.25 10.9 1.7 1.1 8.8 0.0 1.8 1 1 0 1 1 1 0 Ribosomal protein S27 zf-TFIIB PF13453.1 gi|20090625|ref|NP_616700.1| - 0.36 10.0 2.3 0.72 9.0 1.6 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger Cript PF10235.4 gi|20090625|ref|NP_616700.1| - 0.42 11.0 2.5 0.71 10.2 1.8 1.5 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT zf-FCS PF06467.9 gi|20090625|ref|NP_616700.1| - 0.66 9.6 4.6 0.71 9.5 0.1 2.1 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Desulfoferrod_N PF06397.7 gi|20090625|ref|NP_616700.1| - 1 8.7 4.5 2.4 7.5 0.4 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Mu-like_Com PF10122.4 gi|20090625|ref|NP_616700.1| - 1.1 8.3 6.3 2.2 7.4 0.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF2296 PF10058.4 gi|20090625|ref|NP_616700.1| - 1.1 9.0 4.6 25 4.7 3.0 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|20090625|ref|NP_616700.1| - 1.2 9.0 7.7 8.1 6.4 5.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|20090625|ref|NP_616700.1| - 2.1 8.0 7.4 2.9 7.6 0.3 2.4 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2H2 PF00096.21 gi|20090625|ref|NP_616700.1| - 2.1 8.8 4.4 9.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.1 gi|20090625|ref|NP_616700.1| - 4 7.7 6.5 1.2 9.4 0.4 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain UPF0547 PF10571.4 gi|20090625|ref|NP_616700.1| - 9.2 6.0 9.3 16 5.2 5.4 2.1 2 1 0 2 2 1 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.14 gi|20090626|ref|NP_616701.1| - 1.1e-29 102.1 2.4 1.2e-29 101.9 1.7 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|20090626|ref|NP_616701.1| - 0.00096 18.9 2.2 0.0015 18.3 1.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain C1_1 PF00130.17 gi|20090626|ref|NP_616701.1| - 0.0089 15.7 0.6 0.013 15.2 0.4 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|20090626|ref|NP_616701.1| - 0.024 14.5 2.5 3.1 7.8 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF4379 PF14311.1 gi|20090626|ref|NP_616701.1| - 0.027 14.3 3.4 0.085 12.6 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Rep_fac-A_C PF08646.5 gi|20090626|ref|NP_616701.1| - 0.033 13.8 0.1 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain A2L_zn_ribbon PF08792.5 gi|20090626|ref|NP_616701.1| - 0.036 13.5 1.4 0.55 9.7 0.3 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20090626|ref|NP_616701.1| - 0.046 13.3 0.5 0.072 12.7 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|20090626|ref|NP_616701.1| - 0.059 12.9 0.3 0.059 12.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20090626|ref|NP_616701.1| - 0.08 12.6 0.4 0.08 12.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF951 PF06107.6 gi|20090626|ref|NP_616701.1| - 0.099 12.1 1.3 0.17 11.3 0.9 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) UPF0547 PF10571.4 gi|20090626|ref|NP_616701.1| - 0.12 12.0 2.2 0.31 10.7 0.2 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|20090626|ref|NP_616701.1| - 0.14 11.7 3.0 2.2 7.9 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|20090626|ref|NP_616701.1| - 0.2 11.3 2.6 8.9 6.0 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2_4 PF13894.1 gi|20090626|ref|NP_616701.1| - 0.21 11.9 1.8 1.4 9.4 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-UBP PF02148.14 gi|20090626|ref|NP_616701.1| - 0.25 11.4 1.4 0.92 9.6 1.3 1.7 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-H2C2_2 PF13465.1 gi|20090626|ref|NP_616701.1| - 0.28 11.5 3.5 4.6 7.7 0.1 2.3 1 1 1 2 2 2 0 Zinc-finger double domain RNase_PH PF01138.16 gi|20090627|ref|NP_616702.1| - 5.5e-30 104.3 0.0 9.6e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|20090627|ref|NP_616702.1| - 1e-15 57.3 0.6 2.3e-15 56.2 0.4 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|20090628|ref|NP_616703.1| - 4.9e-11 42.1 0.6 9.5e-11 41.1 0.4 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|20090628|ref|NP_616703.1| - 7.1e-09 34.8 0.0 1.5e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_3 PF13014.1 gi|20090628|ref|NP_616703.1| - 2.6e-06 26.9 0.2 5.9e-06 25.8 0.1 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|20090628|ref|NP_616703.1| - 1e-05 25.4 0.9 2e-05 24.5 0.0 1.9 3 0 0 3 3 3 1 S1 RNA binding domain KH_2 PF07650.12 gi|20090628|ref|NP_616703.1| - 0.00051 19.5 0.5 0.0014 18.1 0.2 1.9 1 1 0 1 1 1 1 KH domain BHD_1 PF10403.4 gi|20090628|ref|NP_616703.1| - 0.012 15.1 0.1 0.032 13.7 0.0 1.7 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 1 SBDS PF01172.13 gi|20090629|ref|NP_616704.1| - 7.5e-26 89.7 0.0 1.2e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|20090629|ref|NP_616704.1| - 3.7e-19 68.6 0.1 5e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain DegS PF05384.6 gi|20090629|ref|NP_616704.1| - 0.06 12.5 0.2 3.1 6.9 0.1 2.3 1 1 1 2 2 2 0 Sensor protein DegS EFG_C PF00679.19 gi|20090629|ref|NP_616704.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus Proteasome PF00227.21 gi|20090630|ref|NP_616705.1| - 2e-62 209.8 0.4 2.8e-62 209.4 0.3 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|20090630|ref|NP_616705.1| - 4e-15 54.8 0.4 1.2e-14 53.3 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|20090632|ref|NP_616707.1| - 4.4e-20 71.5 0.0 5.3e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|20090633|ref|NP_616708.1| - 8.2e-38 128.9 0.0 9.9e-38 128.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Amidohydro_4 PF13147.1 gi|20090633|ref|NP_616708.1| - 0.0036 17.3 0.0 0.01 15.9 0.0 1.7 1 1 1 2 2 2 1 Amidohydrolase PNTB PF02233.11 gi|20090633|ref|NP_616708.1| - 0.074 11.8 0.0 0.099 11.4 0.0 1.1 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit RNA_binding PF01877.12 gi|20090634|ref|NP_616709.1| - 4.6e-34 117.0 1.2 5.3e-34 116.7 0.8 1.0 1 0 0 1 1 1 1 RNA binding DUF3596 PF12167.3 gi|20090634|ref|NP_616709.1| - 0.073 12.6 0.0 2.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3596) Ribosomal_L15e PF00827.12 gi|20090635|ref|NP_616710.1| - 1.8e-83 278.7 7.1 2.1e-83 278.5 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 Fusion_gly PF00523.13 gi|20090636|ref|NP_616711.1| - 0.0014 16.7 1.4 0.4 8.6 0.1 2.7 1 1 2 3 3 3 2 Fusion glycoprotein F0 EMP24_GP25L PF01105.19 gi|20090636|ref|NP_616711.1| - 0.02 14.5 0.1 0.029 14.1 0.1 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD UPF0184 PF03670.8 gi|20090636|ref|NP_616711.1| - 9.3 6.5 6.8 6.8 6.9 0.3 3.1 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) OrfB_IS605 PF01385.14 gi|20090637|ref|NP_616712.1| - 1.6e-46 158.5 3.8 1.6e-46 158.5 2.7 1.5 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|20090637|ref|NP_616712.1| - 5.5e-22 76.8 0.6 9.7e-22 76.0 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|20090638|ref|NP_616713.1| - 1.3e-05 24.8 0.0 2.8e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_IS1 PF03400.8 gi|20090639|ref|NP_616714.1| - 1.7e-07 31.4 0.1 0.00045 20.3 0.1 2.2 2 0 0 2 2 2 2 IS1 transposase Topoisom_bac PF01131.15 gi|20090640|ref|NP_616715.1| - 1.5e-102 343.4 0.0 2.2e-102 342.9 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|20090640|ref|NP_616715.1| - 3.9e-16 58.8 0.0 1.4e-15 57.0 0.0 2.0 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|20090640|ref|NP_616715.1| - 5.6e-13 48.1 11.5 2.5e-09 36.4 0.4 3.5 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger OEP PF02321.13 gi|20090640|ref|NP_616715.1| - 0.0043 16.6 0.0 0.008 15.7 0.0 1.3 1 0 0 1 1 1 1 Outer membrane efflux protein Auto_anti-p27 PF06677.7 gi|20090640|ref|NP_616715.1| - 0.0075 16.0 0.4 0.0075 16.0 0.3 3.0 3 0 0 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1451 PF07295.6 gi|20090640|ref|NP_616715.1| - 0.53 10.0 8.3 0.2 11.4 0.6 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1451) ThiC PF01964.13 gi|20090641|ref|NP_616716.1| - 6.5e-188 624.5 0.0 7.4e-188 624.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family Amidohydro_4 PF13147.1 gi|20090641|ref|NP_616716.1| - 0.065 13.2 0.1 0.11 12.5 0.1 1.5 1 1 0 1 1 1 0 Amidohydrolase Adhesin_Dr PF04619.7 gi|20090641|ref|NP_616716.1| - 0.096 12.3 0.0 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Dr-family adhesin DUF3506 PF12014.3 gi|20090641|ref|NP_616716.1| - 0.15 11.8 0.0 0.86 9.4 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF3506) DUF2156 PF09924.4 gi|20090642|ref|NP_616717.1| - 2.1e-52 177.8 0.0 2.4e-52 177.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) Acetyltransf_1 PF00583.19 gi|20090643|ref|NP_616718.1| - 4.7e-17 61.8 0.0 8.9e-17 60.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20090643|ref|NP_616718.1| - 2.9e-10 40.1 0.1 4.2e-10 39.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20090643|ref|NP_616718.1| - 9.6e-08 32.1 0.0 1.2e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20090643|ref|NP_616718.1| - 6.4e-05 22.7 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|20090643|ref|NP_616718.1| - 0.0013 18.4 0.0 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20090643|ref|NP_616718.1| - 0.002 18.0 0.0 0.0037 17.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20090643|ref|NP_616718.1| - 0.0041 17.2 0.0 0.0061 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|20090643|ref|NP_616718.1| - 0.0057 16.6 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20090643|ref|NP_616718.1| - 0.02 14.8 0.0 0.024 14.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20090643|ref|NP_616718.1| - 0.068 13.0 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3303 PF11746.3 gi|20090644|ref|NP_616719.1| - 7.2e-05 23.0 0.0 0.00011 22.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) GYD PF08734.6 gi|20090644|ref|NP_616719.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 GYD domain Lactamase_B PF00753.22 gi|20090645|ref|NP_616720.1| - 6.2e-20 71.6 2.0 9.1e-20 71.1 1.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|20090645|ref|NP_616720.1| - 4.3e-18 65.7 0.0 4.9e-13 49.4 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|20090645|ref|NP_616720.1| - 0.0002 20.9 0.1 0.00043 19.8 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1699 PF08004.6 gi|20090647|ref|NP_616722.1| - 7.3e-70 232.5 0.9 8.3e-70 232.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) LKAAEAR PF15478.1 gi|20090647|ref|NP_616722.1| - 0.031 14.5 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif PAM2 PF07145.10 gi|20090647|ref|NP_616722.1| - 0.061 12.8 0.1 8 6.2 0.0 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region DUF1724 PF08350.5 gi|20090648|ref|NP_616723.1| - 4.5e-20 70.9 0.2 1.1e-19 69.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20090648|ref|NP_616723.1| - 0.016 14.8 0.1 0.035 13.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20090648|ref|NP_616723.1| - 0.06 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain bPH_4 PF06713.6 gi|20090649|ref|NP_616724.1| - 0.034 14.0 0.1 0.086 12.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial PH domain Flavodoxin_1 PF00258.20 gi|20090650|ref|NP_616725.1| - 1.7e-12 47.5 0.1 2.7e-12 46.8 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|20090650|ref|NP_616725.1| - 2.9e-07 30.5 0.1 4.6e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|20090650|ref|NP_616725.1| - 1.1e-05 24.8 0.1 1.7e-05 24.2 0.1 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|20090650|ref|NP_616725.1| - 4e-05 23.0 0.2 0.0013 18.1 0.0 2.2 1 1 1 2 2 2 1 Flavodoxin FMN_red PF03358.10 gi|20090650|ref|NP_616725.1| - 0.048 13.1 0.1 0.37 10.3 0.1 2.0 1 1 0 1 1 1 0 NADPH-dependent FMN reductase PAS_3 PF08447.6 gi|20090651|ref|NP_616726.1| - 3.2e-55 184.1 4.3 9.8e-18 64.0 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|20090651|ref|NP_616726.1| - 4.5e-20 71.9 3.4 8.4e-06 26.1 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|20090651|ref|NP_616726.1| - 2.3e-17 62.8 1.0 1.3e-07 31.4 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|20090651|ref|NP_616726.1| - 3.9e-17 62.2 0.2 0.00064 19.7 0.0 4.0 4 0 0 4 4 4 3 PAS fold GAF_2 PF13185.1 gi|20090651|ref|NP_616726.1| - 1e-10 42.3 0.0 2.2e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|20090651|ref|NP_616726.1| - 4.1e-08 33.1 0.0 0.47 10.4 0.0 3.5 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.1 gi|20090651|ref|NP_616726.1| - 2.3e-05 24.4 0.0 5.7e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain DUF3237 PF11578.3 gi|20090651|ref|NP_616726.1| - 7.2e-05 22.1 0.0 0.96 8.7 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF3237) GAF PF01590.21 gi|20090651|ref|NP_616726.1| - 0.00036 20.6 0.0 0.00081 19.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain MoaE PF02391.12 gi|20090651|ref|NP_616726.1| - 0.002 17.9 0.9 1.4 8.7 0.0 3.7 4 0 0 4 4 4 1 MoaE protein Thr_dehydrat_C PF00585.13 gi|20090651|ref|NP_616726.1| - 0.0087 15.6 0.1 3.1 7.4 0.0 3.7 3 0 0 3 3 3 1 C-terminal regulatory domain of Threonine dehydratase DUF3654 PF12376.3 gi|20090651|ref|NP_616726.1| - 0.038 13.8 2.3 0.68 9.7 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3654) Methyltransf_31 PF13847.1 gi|20090652|ref|NP_616727.1| - 2.6e-22 79.0 0.0 3.3e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090652|ref|NP_616727.1| - 1.2e-18 67.3 0.0 1.8e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090652|ref|NP_616727.1| - 2.8e-16 59.7 0.0 4.5e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090652|ref|NP_616727.1| - 4.1e-16 59.5 0.0 6.5e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090652|ref|NP_616727.1| - 5.5e-16 58.7 0.0 8.7e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090652|ref|NP_616727.1| - 5.7e-16 58.6 0.0 8.3e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090652|ref|NP_616727.1| - 6.1e-14 51.7 0.0 9.4e-14 51.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|20090652|ref|NP_616727.1| - 1.3e-07 30.8 0.0 1.8e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|20090652|ref|NP_616727.1| - 4.3e-07 29.2 0.0 6.6e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|20090652|ref|NP_616727.1| - 7.8e-07 28.4 0.0 9.3e-07 28.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|20090652|ref|NP_616727.1| - 1.3e-06 28.0 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20090652|ref|NP_616727.1| - 1.5e-06 27.5 0.0 2.1e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|20090652|ref|NP_616727.1| - 3.9e-06 26.8 0.0 6.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20090652|ref|NP_616727.1| - 4.8e-05 22.8 0.0 6.8e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20090652|ref|NP_616727.1| - 0.00011 21.4 0.0 0.00016 20.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.6 gi|20090652|ref|NP_616727.1| - 0.0008 18.1 0.0 0.001 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.13 gi|20090652|ref|NP_616727.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase CheR PF01739.13 gi|20090652|ref|NP_616727.1| - 0.0025 17.1 0.0 0.047 12.9 0.0 2.2 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain MetW PF07021.7 gi|20090652|ref|NP_616727.1| - 0.0035 16.7 0.0 0.0063 15.9 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|20090652|ref|NP_616727.1| - 0.0047 16.9 0.0 0.0079 16.1 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|20090652|ref|NP_616727.1| - 0.0057 16.3 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20090652|ref|NP_616727.1| - 0.0093 15.0 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|20090652|ref|NP_616727.1| - 0.028 13.4 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DREV PF05219.7 gi|20090652|ref|NP_616727.1| - 0.035 12.9 0.0 0.048 12.5 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase TPMT PF05724.6 gi|20090652|ref|NP_616727.1| - 0.067 12.6 0.0 0.1 11.9 0.0 1.4 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) ILVD_EDD PF00920.16 gi|20090653|ref|NP_616728.1| - 6.7e-223 740.8 1.3 7.6e-223 740.6 0.9 1.0 1 0 0 1 1 1 1 Dehydratase family MtrH PF02007.13 gi|161484936|ref|NP_616730.2| - 6e-142 471.9 0.2 6.8e-142 471.7 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrA PF04208.9 gi|20090656|ref|NP_616731.1| - 4.9e-69 231.2 0.1 6.1e-69 230.9 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A PTA_PTB PF01515.14 gi|20090657|ref|NP_616732.1| - 0.0056 15.7 0.0 1.4 7.8 0.0 2.2 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase AKAP28 PF14469.1 gi|20090658|ref|NP_616733.1| - 0.063 12.8 0.2 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 28 kDa A-kinase anchor Tox-PL-2 PF15643.1 gi|20090658|ref|NP_616733.1| - 0.13 12.2 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 Papain fold toxin 2 AAA PF00004.24 gi|20090661|ref|NP_616736.1| - 6.9e-11 42.4 0.0 1.6e-10 41.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|20090661|ref|NP_616736.1| - 3.5e-10 39.1 0.0 0.00011 20.9 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|20090661|ref|NP_616736.1| - 5.2e-08 32.2 0.0 9.7e-08 31.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|20090661|ref|NP_616736.1| - 2.6e-07 30.8 0.0 0.0019 18.3 0.0 3.5 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|20090661|ref|NP_616736.1| - 3.2e-05 23.9 0.0 0.00012 22.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|20090661|ref|NP_616736.1| - 0.00025 20.9 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain IPT PF01745.11 gi|20090661|ref|NP_616736.1| - 0.0014 17.8 0.0 0.0054 15.9 0.0 1.9 2 0 0 2 2 2 1 Isopentenyl transferase AAA_17 PF13207.1 gi|20090661|ref|NP_616736.1| - 0.0037 18.0 0.2 0.012 16.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|20090661|ref|NP_616736.1| - 0.0098 15.3 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF1798 PF08807.5 gi|20090661|ref|NP_616736.1| - 0.018 14.7 0.0 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial domain of unknown function (DUF1798) AAA_24 PF13479.1 gi|20090661|ref|NP_616736.1| - 0.02 14.4 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|20090661|ref|NP_616736.1| - 0.037 14.1 0.0 0.12 12.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|20090661|ref|NP_616736.1| - 0.045 12.8 0.0 0.091 11.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_2 PF07724.9 gi|20090661|ref|NP_616736.1| - 0.053 13.4 0.0 0.21 11.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|20090661|ref|NP_616736.1| - 0.069 12.8 0.0 0.32 10.6 0.0 2.0 1 1 0 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|20090661|ref|NP_616736.1| - 0.11 12.2 0.0 0.34 10.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HTH_45 PF14947.1 gi|20090662|ref|NP_616737.1| - 6.1e-23 80.4 1.0 8.3e-23 79.9 0.7 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DDE_Tnp_2 PF04693.7 gi|20090662|ref|NP_616737.1| - 0.037 13.0 0.2 0.044 12.7 0.1 1.0 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Rrf2 PF02082.15 gi|20090662|ref|NP_616737.1| - 0.12 12.4 0.1 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator FMN_red PF03358.10 gi|20090663|ref|NP_616738.1| - 2.3e-17 62.8 0.0 2.8e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20090663|ref|NP_616738.1| - 8.4e-05 22.1 0.0 0.00015 21.3 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold AAA PF00004.24 gi|20090664|ref|NP_616739.1| - 2.3e-96 319.0 0.0 1.1e-47 161.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|20090664|ref|NP_616739.1| - 3.1e-26 91.1 0.0 2.6e-25 88.1 0.0 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|20090664|ref|NP_616739.1| - 3.6e-17 61.7 1.1 2.2e-16 59.2 0.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|20090664|ref|NP_616739.1| - 3.2e-14 53.2 0.0 4.8e-08 33.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|20090664|ref|NP_616739.1| - 4.3e-14 52.1 0.0 3.7e-06 26.1 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|20090664|ref|NP_616739.1| - 1.1e-13 51.6 0.0 7e-06 26.1 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|20090664|ref|NP_616739.1| - 1.8e-13 50.7 0.2 0.00042 20.4 0.0 4.4 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|20090664|ref|NP_616739.1| - 1.1e-12 47.8 1.0 0.00015 21.4 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|20090664|ref|NP_616739.1| - 4.4e-12 46.0 0.0 4.7e-06 26.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|20090664|ref|NP_616739.1| - 4.1e-11 43.7 0.0 4.7e-05 24.1 0.0 3.0 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|20090664|ref|NP_616739.1| - 6.3e-11 41.7 0.0 1.3e-05 24.3 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|20090664|ref|NP_616739.1| - 2.2e-10 40.5 0.0 0.00014 21.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|20090664|ref|NP_616739.1| - 2.5e-10 39.9 1.7 0.00057 19.5 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain TIP49 PF06068.8 gi|20090664|ref|NP_616739.1| - 2.8e-10 39.4 0.0 0.00027 19.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|20090664|ref|NP_616739.1| - 5.8e-10 38.8 0.1 0.00048 19.6 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein NACHT PF05729.7 gi|20090664|ref|NP_616739.1| - 2.6e-09 36.9 0.3 0.032 13.8 0.0 4.2 3 1 1 4 4 4 2 NACHT domain Sigma54_activat PF00158.21 gi|20090664|ref|NP_616739.1| - 1.1e-08 34.7 0.1 0.0023 17.4 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|20090664|ref|NP_616739.1| - 4.3e-08 32.7 2.8 0.0029 17.0 0.0 3.4 2 1 1 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|20090664|ref|NP_616739.1| - 7.9e-08 32.6 0.0 0.014 15.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|20090664|ref|NP_616739.1| - 1e-07 31.3 0.4 0.013 14.6 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20090664|ref|NP_616739.1| - 5.6e-07 29.9 0.0 0.0095 16.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_28 PF13521.1 gi|20090664|ref|NP_616739.1| - 8.3e-07 29.1 0.0 0.033 14.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|20090664|ref|NP_616739.1| - 1e-06 28.8 0.0 0.083 13.0 0.0 2.8 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|20090664|ref|NP_616739.1| - 1e-06 28.8 0.0 0.063 13.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|20090664|ref|NP_616739.1| - 4.8e-06 26.2 0.0 0.024 14.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|20090664|ref|NP_616739.1| - 6.5e-06 25.2 0.0 0.018 13.9 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|20090664|ref|NP_616739.1| - 1.4e-05 24.3 0.4 0.24 10.5 0.0 3.5 4 0 0 4 4 3 2 PhoH-like protein Arch_ATPase PF01637.13 gi|20090664|ref|NP_616739.1| - 1.9e-05 24.4 0.1 0.41 10.3 0.0 3.7 2 2 0 2 2 2 2 Archaeal ATPase KaiC PF06745.8 gi|20090664|ref|NP_616739.1| - 2.1e-05 23.7 0.2 0.62 9.1 0.0 3.3 2 1 0 3 3 3 2 KaiC AAA_3 PF07726.6 gi|20090664|ref|NP_616739.1| - 2.8e-05 23.7 0.0 0.22 11.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|20090664|ref|NP_616739.1| - 7.1e-05 21.9 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|20090664|ref|NP_616739.1| - 0.00011 22.0 0.0 0.28 10.9 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|20090664|ref|NP_616739.1| - 0.00011 21.1 0.0 0.41 9.4 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.1 gi|20090664|ref|NP_616739.1| - 0.00012 21.7 0.0 0.2 11.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain SKI PF01202.17 gi|20090664|ref|NP_616739.1| - 0.00023 21.0 0.2 1.5 8.6 0.0 3.3 3 0 0 3 3 3 1 Shikimate kinase UPF0079 PF02367.12 gi|20090664|ref|NP_616739.1| - 0.00032 20.3 0.0 0.91 9.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF815 PF05673.8 gi|20090664|ref|NP_616739.1| - 0.0004 19.3 0.0 0.62 8.9 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|20090664|ref|NP_616739.1| - 0.00059 19.4 0.0 0.47 10.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|20090664|ref|NP_616739.1| - 0.001 18.1 0.3 1.3 7.9 0.0 3.6 2 2 2 4 4 4 1 KAP family P-loop domain Guanylate_kin PF00625.16 gi|20090664|ref|NP_616739.1| - 0.001 18.5 0.2 11 5.4 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase Vps4_C PF09336.5 gi|20090664|ref|NP_616739.1| - 0.0013 18.6 0.3 6.1 6.8 0.0 4.0 3 0 0 3 3 3 0 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.20 gi|20090664|ref|NP_616739.1| - 0.0028 17.2 0.0 1.7 8.0 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|20090664|ref|NP_616739.1| - 0.0032 17.1 0.1 3.7 7.2 0.0 3.4 2 1 1 3 3 3 0 NTPase T2SE PF00437.15 gi|20090664|ref|NP_616739.1| - 0.0041 16.0 0.0 3 6.6 0.0 2.8 3 0 0 3 3 2 0 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|20090664|ref|NP_616739.1| - 0.013 15.1 0.0 1.5 8.4 0.0 2.8 2 1 0 2 2 2 0 Bacterial dnaA protein AAA_29 PF13555.1 gi|20090664|ref|NP_616739.1| - 0.039 13.4 0.0 10 5.7 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain AFG1_ATPase PF03969.11 gi|20090664|ref|NP_616739.1| - 0.043 12.6 0.0 4.9 5.8 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase CPT PF07931.7 gi|20090664|ref|NP_616739.1| - 0.047 13.3 0.0 9.8 5.7 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein cobW PF02492.14 gi|20090664|ref|NP_616739.1| - 0.059 12.8 0.1 13 5.2 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.1 gi|20090664|ref|NP_616739.1| - 0.068 13.4 0.0 5.2 7.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|20090664|ref|NP_616739.1| - 0.1 12.0 0.5 18 4.6 0.0 3.0 4 0 0 4 4 3 0 AAA-like domain PduV-EutP PF10662.4 gi|20090664|ref|NP_616739.1| - 0.1 12.1 0.0 15 5.0 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DEAD PF00270.24 gi|20090664|ref|NP_616739.1| - 0.1 12.0 0.4 48 3.4 0.1 3.5 2 2 1 3 3 3 0 DEAD/DEAH box helicase KTI12 PF08433.5 gi|20090664|ref|NP_616739.1| - 0.17 11.0 0.0 19 4.3 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MULE PF10551.4 gi|20090665|ref|NP_616740.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20090665|ref|NP_616740.1| - 0.022 13.2 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20090665|ref|NP_616740.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20090665|ref|NP_616740.1| - 0.04 13.4 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20090665|ref|NP_616740.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20090665|ref|NP_616740.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20090665|ref|NP_616740.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20090665|ref|NP_616740.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger CBS PF00571.23 gi|20090666|ref|NP_616741.1| - 2.9e-19 68.5 2.2 1.9e-11 43.5 0.1 2.5 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|20090666|ref|NP_616741.1| - 1.3e-15 56.9 0.4 1.4e-14 53.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|20090666|ref|NP_616741.1| - 6.2e-13 48.7 0.1 1.7e-12 47.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|20090666|ref|NP_616741.1| - 5.6e-12 45.5 0.1 2.4e-11 43.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|20090666|ref|NP_616741.1| - 2.1e-05 24.6 0.0 0.00022 21.3 0.0 2.3 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|20090666|ref|NP_616741.1| - 2.4e-05 23.8 0.2 5.5e-05 22.7 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|20090666|ref|NP_616741.1| - 0.00022 20.9 0.1 0.0014 18.4 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20090666|ref|NP_616741.1| - 0.0065 15.8 0.1 0.1 12.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20090666|ref|NP_616741.1| - 0.042 13.5 0.0 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF1241 PF06840.6 gi|20090666|ref|NP_616741.1| - 0.064 12.5 0.1 0.15 11.2 0.0 1.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1241) LacI PF00356.16 gi|20090666|ref|NP_616741.1| - 0.076 12.6 2.3 4.5 6.9 0.1 2.8 2 1 0 2 2 2 0 Bacterial regulatory proteins, lacI family MarR PF01047.17 gi|20090666|ref|NP_616741.1| - 0.12 12.1 0.1 0.74 9.5 0.0 2.3 3 0 0 3 3 3 0 MarR family HTH_23 PF13384.1 gi|20090666|ref|NP_616741.1| - 0.15 11.7 0.0 6 6.6 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain Aminotran_5 PF00266.14 gi|20090667|ref|NP_616742.1| - 5.7e-42 143.7 0.0 6.9e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|20090667|ref|NP_616742.1| - 0.00017 20.7 0.1 0.00031 19.8 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|20090667|ref|NP_616742.1| - 0.0065 15.6 0.1 0.014 14.5 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DMRL_synthase PF00885.14 gi|20090668|ref|NP_616743.1| - 1.5e-20 73.3 0.2 1.7e-20 73.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF2428 PF10350.4 gi|20090668|ref|NP_616743.1| - 0.1 11.5 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative death-receptor fusion protein (DUF2428) DUF3667 PF12412.3 gi|20090668|ref|NP_616743.1| - 0.14 11.4 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) DMRL_synthase PF00885.14 gi|20090669|ref|NP_616744.1| - 2.6e-32 111.4 0.1 2.9e-32 111.3 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|20090670|ref|NP_616745.1| - 2.2e-67 227.5 0.0 2.5e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|20090670|ref|NP_616745.1| - 0.00046 18.5 0.0 0.00073 17.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|20090670|ref|NP_616745.1| - 0.0071 15.1 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Peptidase_S8 PF00082.17 gi|20090670|ref|NP_616745.1| - 0.055 12.6 0.0 0.077 12.1 0.0 1.5 1 1 0 1 1 1 0 Subtilase family CTP_transf_2 PF01467.21 gi|20090671|ref|NP_616746.1| - 7.2e-18 65.1 0.0 1.1e-17 64.4 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase Urm1 PF09138.6 gi|20090671|ref|NP_616746.1| - 0.0088 16.1 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) FAD_syn PF06574.7 gi|20090671|ref|NP_616746.1| - 0.025 14.2 0.1 0.08 12.5 0.1 2.0 1 1 0 1 1 1 0 FAD synthetase DUF3219 PF11514.3 gi|20090671|ref|NP_616746.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3219) DUF39 PF01837.11 gi|20090672|ref|NP_616747.1| - 2.8e-147 489.8 0.1 3.7e-147 489.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|20090672|ref|NP_616747.1| - 4.4e-24 83.9 0.2 1e-10 41.2 0.0 2.5 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|20090673|ref|NP_616748.1| - 1.8e-15 55.8 15.9 5.6e-08 32.0 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20090673|ref|NP_616748.1| - 8.5e-11 41.9 25.7 1.3e-07 31.8 10.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20090673|ref|NP_616748.1| - 1.1e-10 41.3 4.8 2e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20090673|ref|NP_616748.1| - 2.1e-10 39.9 14.2 2.5e-05 23.9 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20090673|ref|NP_616748.1| - 2.3e-10 40.1 32.2 1.8e-07 30.8 12.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20090673|ref|NP_616748.1| - 4.1e-10 38.9 16.9 4.7e-05 23.0 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20090673|ref|NP_616748.1| - 5.3e-10 39.5 14.9 9.2e-10 38.7 10.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20090673|ref|NP_616748.1| - 7.2e-09 35.8 6.5 0.00069 19.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.5 gi|20090673|ref|NP_616748.1| - 4.9e-08 32.4 0.0 5.7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 NIL domain Fer4_16 PF13484.1 gi|20090673|ref|NP_616748.1| - 8.7e-08 32.8 11.6 0.00064 20.4 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|20090673|ref|NP_616748.1| - 1.4e-07 31.8 13.4 2.7e-05 24.4 0.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20090673|ref|NP_616748.1| - 5.2e-07 29.9 10.6 0.0027 18.0 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|20090673|ref|NP_616748.1| - 1.1e-06 28.3 15.8 0.0034 17.2 2.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20090673|ref|NP_616748.1| - 4e-06 26.7 16.9 0.00072 19.6 2.5 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20090673|ref|NP_616748.1| - 4.3e-05 23.7 22.7 0.011 16.1 3.9 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20090673|ref|NP_616748.1| - 0.00027 21.4 13.9 0.027 15.0 1.0 2.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|20090673|ref|NP_616748.1| - 0.0012 18.6 7.7 0.0033 17.2 5.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.5 gi|20090673|ref|NP_616748.1| - 6.9 6.8 10.1 13 6.0 0.4 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF3796 PF12676.2 gi|20090674|ref|NP_616749.1| - 1 9.5 5.0 1.1 9.5 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3796) dTMP_synthase PF02593.9 gi|20090675|ref|NP_616750.1| - 3.1e-75 252.2 0.0 3.6e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase AIM24 PF01987.12 gi|20090676|ref|NP_616751.1| - 3.1e-46 157.5 0.0 3.6e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF2092 PF09865.4 gi|20090676|ref|NP_616751.1| - 0.049 12.6 0.0 0.085 11.9 0.0 1.4 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2092) DUF498 PF04430.9 gi|20090677|ref|NP_616752.1| - 1.2e-15 56.9 0.0 1.4e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) MS_channel PF00924.13 gi|20090678|ref|NP_616753.1| - 7.3e-51 172.4 1.6 1.1e-50 171.9 1.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|20090678|ref|NP_616753.1| - 0.00023 20.7 2.5 0.00023 20.7 1.8 2.4 2 1 1 3 3 3 1 Conserved TM helix DUF1129 PF06570.6 gi|20090678|ref|NP_616753.1| - 0.19 11.0 4.1 0.28 10.4 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF1212 PF06738.7 gi|20090678|ref|NP_616753.1| - 1.9 7.9 7.4 3.6 6.9 5.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) Phage_integrase PF00589.17 gi|20090679|ref|NP_616754.1| - 1.4e-22 80.1 0.0 2.4e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|20090679|ref|NP_616754.1| - 2.9e-09 37.1 6.2 1.8e-06 28.1 0.1 2.9 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|20090679|ref|NP_616754.1| - 3.4e-06 27.0 0.2 9.8e-06 25.6 0.2 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.2 gi|20090679|ref|NP_616754.1| - 0.00097 18.9 1.0 0.0024 17.6 0.7 1.6 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20090679|ref|NP_616754.1| - 0.0096 15.3 1.2 0.068 12.6 0.9 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DUF3435 PF11917.3 gi|20090679|ref|NP_616754.1| - 0.026 13.2 0.0 0.048 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) zf-ribbon_3 PF13248.1 gi|20090679|ref|NP_616754.1| - 0.033 13.3 0.6 0.066 12.4 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain MULE PF10551.4 gi|20090680|ref|NP_616755.1| - 4.1e-13 49.3 0.3 9.1e-13 48.2 0.1 1.7 2 0 0 2 2 2 1 MULE transposase domain Transposase_mut PF00872.13 gi|20090680|ref|NP_616755.1| - 0.0094 14.5 0.0 0.017 13.6 0.0 1.5 1 1 0 1 1 1 1 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20090680|ref|NP_616755.1| - 0.01 15.6 0.1 0.027 14.2 0.0 1.8 1 1 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20090680|ref|NP_616755.1| - 0.014 14.9 0.4 0.017 14.7 0.2 1.3 1 0 0 1 1 1 0 Transposase DUF1874 PF08960.5 gi|20090680|ref|NP_616755.1| - 0.12 12.1 1.0 2.3 8.0 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF1874) Prenyltransf PF01255.14 gi|20090682|ref|NP_616757.1| - 5.5e-39 133.5 0.0 8.9e-39 132.9 0.0 1.3 1 1 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Dynein_IC2 PF11540.3 gi|20090682|ref|NP_616757.1| - 0.066 12.5 0.0 0.15 11.4 0.0 1.6 1 0 0 1 1 1 0 Cytoplasmic dynein 1 intermediate chain 2 CMAS PF02353.15 gi|20090684|ref|NP_616759.1| - 7.3e-11 41.6 0.0 1e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|20090684|ref|NP_616759.1| - 1.8e-10 41.1 0.0 3e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090684|ref|NP_616759.1| - 1.5e-08 35.2 0.0 5.6e-08 33.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090684|ref|NP_616759.1| - 3.2e-06 26.8 0.0 6.6e-06 25.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20090684|ref|NP_616759.1| - 4.1e-06 26.0 0.0 6.4e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|20090684|ref|NP_616759.1| - 9.5e-06 25.4 0.0 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090684|ref|NP_616759.1| - 2.3e-05 24.6 0.0 4e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090684|ref|NP_616759.1| - 0.00034 20.6 0.0 0.00064 19.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090684|ref|NP_616759.1| - 0.00044 20.6 0.0 0.00077 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090684|ref|NP_616759.1| - 0.00055 19.3 0.0 0.00082 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20090684|ref|NP_616759.1| - 0.0049 16.4 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|20090684|ref|NP_616759.1| - 0.0065 16.1 0.0 0.025 14.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|20090684|ref|NP_616759.1| - 0.021 15.6 0.0 0.052 14.3 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|20090684|ref|NP_616759.1| - 0.049 12.3 0.0 0.062 11.9 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|20090684|ref|NP_616759.1| - 0.07 12.2 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|20090684|ref|NP_616759.1| - 0.094 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TrmB PF01978.14 gi|20090685|ref|NP_616760.1| - 2.7e-21 75.0 1.8 5.9e-21 73.9 0.5 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FMN_red PF03358.10 gi|20090686|ref|NP_616761.1| - 1.6e-22 79.6 0.0 2.5e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20090686|ref|NP_616761.1| - 4.5e-12 45.9 0.0 6.2e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Methyltransf_9 PF08003.6 gi|20090686|ref|NP_616761.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF422 PF04240.7 gi|20090687|ref|NP_616762.1| - 1.9e-06 27.4 11.3 1.9e-06 27.4 7.8 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF422) DUF131 PF01998.12 gi|20090687|ref|NP_616762.1| - 2.8 7.3 6.7 0.2 11.0 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF131 PKD PF00801.15 gi|20090688|ref|NP_616763.1| - 1.3e-31 108.1 26.5 1.9e-11 43.4 2.0 4.5 5 0 0 5 5 5 3 PKD domain Cytochrom_D1 PF02239.11 gi|20090688|ref|NP_616763.1| - 4.9e-16 58.0 6.2 3.5e-06 25.5 0.1 4.0 2 1 2 4 4 4 3 Cytochrome D1 heme domain Lactonase PF10282.4 gi|20090688|ref|NP_616763.1| - 7.8e-13 48.2 3.2 9.6e-05 21.6 0.0 4.0 2 1 1 4 4 4 3 Lactonase, 7-bladed beta-propeller Arylesterase PF01731.15 gi|20090688|ref|NP_616763.1| - 1.1e-07 31.7 7.3 8.7 6.4 0.0 6.5 3 2 3 6 6 6 3 Arylesterase NHL PF01436.16 gi|20090688|ref|NP_616763.1| - 1.7e-05 24.5 12.4 5.6 7.1 0.0 7.3 6 0 0 6 6 6 2 NHL repeat Me-amine-dh_H PF06433.6 gi|20090688|ref|NP_616763.1| - 0.0076 14.9 9.6 0.17 10.5 0.9 4.3 3 1 1 4 4 4 1 Methylamine dehydrogenase heavy chain (MADH) DUF3312 PF11768.3 gi|20090688|ref|NP_616763.1| - 0.079 11.1 0.0 0.16 10.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3312) PD40 PF07676.7 gi|20090688|ref|NP_616763.1| - 0.27 10.9 8.5 23 4.7 0.0 5.7 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat PBCV_basic_adap PF08789.5 gi|20090688|ref|NP_616763.1| - 1.8 8.2 15.5 10 5.8 0.1 6.0 6 0 0 6 6 6 0 PBCV-specific basic adaptor domain HEAT_2 PF13646.1 gi|20090689|ref|NP_616764.1| - 2.1e-122 399.6 72.8 8.3e-23 80.4 2.2 10.0 3 2 7 11 11 11 11 HEAT repeats HEAT_PBS PF03130.11 gi|20090689|ref|NP_616764.1| - 1.5e-55 180.0 25.6 4.2e-05 23.6 0.7 16.5 17 0 0 17 17 16 12 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|20090689|ref|NP_616764.1| - 8.8e-53 171.6 21.1 0.001 18.9 0.0 17.8 18 0 0 18 18 17 12 HEAT repeat HEAT_EZ PF13513.1 gi|20090689|ref|NP_616764.1| - 7.4e-48 159.9 42.6 0.00047 20.5 0.0 18.0 11 3 7 18 18 18 12 HEAT-like repeat Arm PF00514.18 gi|20090689|ref|NP_616764.1| - 9.2e-39 129.9 18.8 0.002 17.8 0.0 16.6 15 2 2 17 17 17 9 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|20090689|ref|NP_616764.1| - 2.7e-16 59.7 5.3 1.5 9.2 0.0 11.3 4 3 6 11 11 11 2 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|20090689|ref|NP_616764.1| - 9.2e-11 41.7 28.0 2.2 8.0 0.0 11.2 3 3 7 11 11 11 5 Aconitate B N-terminal domain Cnd1 PF12717.2 gi|20090689|ref|NP_616764.1| - 9.8e-10 38.5 28.1 0.026 14.4 0.0 9.9 4 3 6 10 10 10 3 non-SMC mitotic condensation complex subunit 1 NACHT PF05729.7 gi|20090689|ref|NP_616764.1| - 2e-08 34.0 0.0 1e-07 31.7 0.0 2.3 1 0 0 1 1 1 1 NACHT domain RasGEF_N_2 PF14663.1 gi|20090689|ref|NP_616764.1| - 0.00013 21.8 9.1 0.53 10.2 0.1 7.6 7 2 2 9 9 9 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain AAA_22 PF13401.1 gi|20090689|ref|NP_616764.1| - 0.001 19.2 1.8 0.017 15.2 0.0 3.8 3 1 0 3 3 3 1 AAA domain DUF1652 PF07865.6 gi|20090689|ref|NP_616764.1| - 0.01 15.3 17.4 15 5.2 0.0 9.5 11 1 1 12 12 12 0 Protein of unknown function (DUF1652) ABC_tran PF00005.22 gi|20090689|ref|NP_616764.1| - 0.016 15.5 5.0 0.019 15.2 0.0 3.4 3 0 0 3 3 3 0 ABC transporter DUF2435 PF10363.4 gi|20090689|ref|NP_616764.1| - 0.033 14.0 10.5 2.4 8.0 0.0 7.0 6 4 1 7 7 7 0 Protein of unknown function (DUF2435) DUF2019 PF09450.5 gi|20090689|ref|NP_616764.1| - 0.037 13.8 7.8 9 6.2 0.0 6.0 5 1 3 8 8 8 0 Domain of unknown function (DUF2019) DUF3368 PF11848.3 gi|20090689|ref|NP_616764.1| - 0.059 12.9 10.1 1.8 8.2 0.0 6.4 7 1 1 8 8 7 0 Domain of unknown function (DUF3368) DUF458 PF04308.7 gi|20090689|ref|NP_616764.1| - 0.086 12.5 3.9 0.084 12.5 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF458) AAA_17 PF13207.1 gi|20090689|ref|NP_616764.1| - 0.48 11.2 0.0 0.48 11.2 0.0 3.7 3 1 0 3 3 3 0 AAA domain HTH_41 PF14502.1 gi|20090689|ref|NP_616764.1| - 0.59 9.7 5.7 44 3.7 0.0 5.2 4 0 0 4 4 4 0 Helix-turn-helix domain Imm16 PF15565.1 gi|20090689|ref|NP_616764.1| - 1.7 8.5 18.5 0.11 12.4 0.2 6.0 7 0 0 7 7 7 0 Immunity protein 16 PfkB PF00294.19 gi|20090690|ref|NP_616765.1| - 1.2e-46 159.1 0.0 1.6e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|20090690|ref|NP_616765.1| - 0.002 17.3 0.0 0.0051 16.0 0.0 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase PEGA PF08308.6 gi|20090690|ref|NP_616765.1| - 0.12 12.1 0.5 0.36 10.6 0.1 1.9 2 0 0 2 2 2 0 PEGA domain MatE PF01554.13 gi|20090692|ref|NP_616767.1| - 2.1e-56 190.0 28.7 2.1e-28 98.9 6.6 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|20090692|ref|NP_616767.1| - 3e-12 46.5 11.4 1.2e-06 28.3 6.2 4.5 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|20090692|ref|NP_616767.1| - 5.1e-06 26.1 10.7 5.1e-06 26.1 7.4 3.0 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Glyoxalase_2 PF12681.2 gi|20090693|ref|NP_616768.1| - 2.7e-14 53.6 0.0 3.3e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|20090693|ref|NP_616768.1| - 2.8e-09 37.0 0.0 5.1e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|20090693|ref|NP_616768.1| - 0.0016 18.4 0.0 0.032 14.2 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAS_3 PF08447.6 gi|20090694|ref|NP_616769.1| - 9.8e-157 509.5 34.3 4.5e-24 84.3 0.2 7.6 7 0 0 7 7 7 7 PAS fold PAS_9 PF13426.1 gi|20090694|ref|NP_616769.1| - 2.8e-77 255.7 9.0 1.3e-14 54.3 0.1 8.5 8 0 0 8 8 8 7 PAS domain PAS PF00989.19 gi|20090694|ref|NP_616769.1| - 6.2e-37 125.8 2.7 2.3e-08 33.8 0.1 8.7 8 1 0 8 8 8 6 PAS fold HisKA_2 PF07568.7 gi|20090694|ref|NP_616769.1| - 2.8e-34 116.8 4.0 5.9e-34 115.7 1.1 2.8 2 0 0 2 2 2 1 Histidine kinase PAS_11 PF14598.1 gi|20090694|ref|NP_616769.1| - 5.4e-27 93.9 0.0 0.0022 17.9 0.0 7.1 7 0 0 7 7 7 6 PAS domain PAS_4 PF08448.5 gi|20090694|ref|NP_616769.1| - 5.7e-20 71.3 0.0 0.026 14.5 0.0 8.5 8 1 0 8 8 8 5 PAS fold HATPase_c PF02518.21 gi|20090694|ref|NP_616769.1| - 5.4e-11 42.1 0.1 3.2e-10 39.7 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|20090694|ref|NP_616769.1| - 0.00015 22.1 0.5 0.00043 20.6 0.3 1.8 1 0 0 1 1 1 1 HWE histidine kinase VPS11_C PF12451.3 gi|20090694|ref|NP_616769.1| - 0.0027 17.5 7.7 1.8 8.4 0.0 6.3 7 0 0 7 7 7 1 Vacuolar protein sorting protein 11 C terminal HATPase_c_2 PF13581.1 gi|20090694|ref|NP_616769.1| - 0.03 14.0 0.0 0.1 12.4 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Colicin_Pyocin PF01320.13 gi|20090694|ref|NP_616769.1| - 0.045 13.6 6.3 2.9 7.8 0.1 4.5 4 0 0 4 4 4 0 Colicin immunity protein / pyocin immunity protein TraF_2 PF13729.1 gi|20090694|ref|NP_616769.1| - 0.059 12.1 0.0 3 6.5 0.0 2.6 2 0 0 2 2 2 0 F plasmid transfer operon, TraF, protein DUF3237 PF11578.3 gi|20090694|ref|NP_616769.1| - 0.11 11.8 0.4 6.5 6.0 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF3237) YcgL PF05166.8 gi|20090694|ref|NP_616769.1| - 0.19 11.8 16.1 0.56 10.3 0.1 5.5 6 0 0 6 6 5 0 YcgL domain FecCD PF01032.13 gi|20090697|ref|NP_616772.1| - 6.6e-89 297.8 35.2 7.9e-89 297.5 24.4 1.0 1 0 0 1 1 1 1 FecCD transport family Methyltransf_11 PF08241.7 gi|20090698|ref|NP_616773.1| - 7.7e-23 80.8 0.0 1.3e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090698|ref|NP_616773.1| - 4e-20 71.9 0.0 4.9e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090698|ref|NP_616773.1| - 1.6e-18 66.9 0.0 2.1e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090698|ref|NP_616773.1| - 2.7e-15 56.1 0.0 6.3e-15 54.9 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20090698|ref|NP_616773.1| - 1.6e-13 50.8 0.0 3e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090698|ref|NP_616773.1| - 2.6e-13 50.2 0.0 1.3e-12 47.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090698|ref|NP_616773.1| - 2.4e-10 40.9 0.0 1.6e-09 38.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|20090698|ref|NP_616773.1| - 2e-09 37.0 0.1 2.8e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20090698|ref|NP_616773.1| - 8.1e-09 35.5 0.0 2.4e-08 33.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20090698|ref|NP_616773.1| - 4.2e-06 26.0 0.0 5.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|20090698|ref|NP_616773.1| - 2.1e-05 24.2 0.0 2.7e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20090698|ref|NP_616773.1| - 0.00012 21.6 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20090698|ref|NP_616773.1| - 0.00033 19.8 0.0 0.00044 19.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|20090698|ref|NP_616773.1| - 0.00087 18.7 0.0 0.0011 18.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|20090698|ref|NP_616773.1| - 0.00096 18.5 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.10 gi|20090698|ref|NP_616773.1| - 0.0015 17.7 0.0 0.0035 16.4 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G UPF0020 PF01170.13 gi|20090698|ref|NP_616773.1| - 0.026 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 AdoMet_MTase PF07757.8 gi|20090698|ref|NP_616773.1| - 0.065 13.3 0.0 0.15 12.2 0.0 1.6 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase RrnaAD PF00398.15 gi|20090698|ref|NP_616773.1| - 0.066 12.2 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Mur_ligase PF01225.20 gi|20090698|ref|NP_616773.1| - 0.081 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_16 PF10294.4 gi|20090698|ref|NP_616773.1| - 0.09 12.2 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase N2227 PF07942.7 gi|20090698|ref|NP_616773.1| - 0.11 11.4 0.0 0.62 8.9 0.0 1.9 1 1 1 2 2 2 0 N2227-like protein DUF4198 PF10670.4 gi|20090699|ref|NP_616774.1| - 2.3e-31 109.4 0.0 2.8e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Peripla_BP_2 PF01497.13 gi|20090700|ref|NP_616775.1| - 1.1e-28 99.9 0.0 1.5e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Cohesin PF00963.13 gi|20090701|ref|NP_616776.1| - 1.3e-09 38.0 0.2 2e-09 37.4 0.2 1.2 1 0 0 1 1 1 1 Cohesin domain NPCBM PF08305.6 gi|20090701|ref|NP_616776.1| - 0.03 14.2 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 NPCBM/NEW2 domain DUF86 PF01934.12 gi|20090702|ref|NP_616777.1| - 1.2e-27 95.9 0.6 1.4e-27 95.7 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|20090703|ref|NP_616778.1| - 3.5e-11 43.2 0.5 5.3e-11 42.7 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.2 gi|20090703|ref|NP_616778.1| - 0.024 14.1 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain DUF294 PF03445.8 gi|20090703|ref|NP_616778.1| - 0.062 12.9 0.1 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 Arch_ATPase PF01637.13 gi|20090704|ref|NP_616779.1| - 3.5e-23 82.5 1.2 3.5e-23 82.5 0.9 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|20090704|ref|NP_616779.1| - 2e-11 44.2 0.0 3.3e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|20090704|ref|NP_616779.1| - 1.3e-10 41.2 2.2 0.00059 19.7 0.0 3.1 3 1 1 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|20090704|ref|NP_616779.1| - 1.4e-06 28.4 0.0 3.8e-05 23.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|20090704|ref|NP_616779.1| - 3.8e-05 22.4 0.1 0.049 12.2 0.0 2.6 2 1 0 2 2 2 2 AAA-like domain AAA PF00004.24 gi|20090704|ref|NP_616779.1| - 0.00089 19.4 0.1 0.063 13.4 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) LysE PF01810.13 gi|20090705|ref|NP_616780.1| - 1.8e-31 108.9 12.7 2.2e-31 108.6 8.8 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|20090705|ref|NP_616780.1| - 0.072 12.5 9.4 0.59 9.5 6.5 2.4 1 1 0 1 1 1 0 Integral membrane protein TerC family DUF1418 PF07214.7 gi|20090705|ref|NP_616780.1| - 0.21 11.2 1.3 0.39 10.3 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) Abhydrolase_6 PF12697.2 gi|20090706|ref|NP_616781.1| - 4.6e-17 62.6 0.0 1.7e-16 60.8 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20090706|ref|NP_616781.1| - 2.7e-09 36.9 0.0 1.3e-08 34.7 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20090706|ref|NP_616781.1| - 2.4e-05 24.1 0.0 4.7e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.8 gi|20090706|ref|NP_616781.1| - 0.0093 15.4 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 Serine hydrolase (FSH1) DUF726 PF05277.7 gi|20090706|ref|NP_616781.1| - 0.036 12.9 0.0 0.057 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Thioesterase PF00975.15 gi|20090706|ref|NP_616781.1| - 0.044 14.0 0.0 0.057 13.6 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain Lipase_3 PF01764.20 gi|20090706|ref|NP_616781.1| - 0.065 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) Sugar-bind PF04198.8 gi|20090706|ref|NP_616781.1| - 0.07 12.0 0.0 0.091 11.6 0.0 1.1 1 0 0 1 1 1 0 Putative sugar-binding domain Abhydrolase_6 PF12697.2 gi|20090707|ref|NP_616782.1| - 4.6e-15 56.1 0.0 3.2e-14 53.3 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20090707|ref|NP_616782.1| - 4.2e-10 39.5 0.0 1.2e-08 34.7 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20090707|ref|NP_616782.1| - 1.1e-06 28.4 0.0 2.7e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|20090707|ref|NP_616782.1| - 0.019 15.1 0.0 0.023 14.9 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Abhydrolase_2 PF02230.11 gi|20090707|ref|NP_616782.1| - 0.028 13.8 0.0 0.57 9.5 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase FSH1 PF03959.8 gi|20090707|ref|NP_616782.1| - 0.052 12.9 0.0 0.14 11.5 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DLH PF01738.13 gi|20090707|ref|NP_616782.1| - 0.12 11.6 0.0 11 5.1 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family MFS_1 PF07690.11 gi|20090708|ref|NP_616783.1| - 5.6e-48 163.4 43.1 5.6e-48 163.4 29.9 1.3 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|20090708|ref|NP_616783.1| - 7e-11 41.3 6.4 7e-11 41.3 4.4 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|20090708|ref|NP_616783.1| - 3.4e-08 32.0 11.7 5e-08 31.5 8.1 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|20090708|ref|NP_616783.1| - 1.9e-07 29.8 25.8 1.9e-07 29.8 17.9 2.1 1 1 1 2 2 2 1 MFS/sugar transport protein FMN_red PF03358.10 gi|20090710|ref|NP_616785.1| - 6.9e-23 80.8 0.0 9.1e-23 80.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20090710|ref|NP_616785.1| - 2.8e-15 56.3 0.0 3.5e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|20090710|ref|NP_616785.1| - 0.00024 21.1 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain ABC1 PF03109.11 gi|20090711|ref|NP_616786.1| - 4.4e-40 136.3 0.0 8.8e-40 135.3 0.0 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|20090711|ref|NP_616786.1| - 4.8e-07 29.7 0.0 1.4e-06 28.2 0.0 1.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|20090711|ref|NP_616786.1| - 0.00017 20.8 0.0 0.00035 19.7 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|20090711|ref|NP_616786.1| - 0.02 14.2 0.0 0.051 12.9 0.0 1.6 2 0 0 2 2 2 0 RIO1 family Pkinase_Tyr PF07714.12 gi|20090711|ref|NP_616786.1| - 0.024 13.7 0.0 0.17 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein tyrosine kinase UBA_3 PF09288.5 gi|20090711|ref|NP_616786.1| - 0.29 10.7 2.1 3.5 7.3 0.0 3.3 3 1 1 4 4 4 0 Fungal ubiquitin-associated domain Lon_C PF05362.8 gi|20090712|ref|NP_616787.1| - 1.8e-90 301.7 1.0 3.8e-90 300.6 0.7 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.24 gi|20090712|ref|NP_616787.1| - 4.4e-22 78.7 0.1 2.6e-21 76.2 0.0 2.4 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) LON PF02190.11 gi|20090712|ref|NP_616787.1| - 1.2e-11 44.7 0.1 2.7e-11 43.5 0.1 1.6 1 0 0 1 1 1 1 ATP-dependent protease La (LON) domain ChlI PF13541.1 gi|20090712|ref|NP_616787.1| - 8.6e-11 41.4 0.3 2.6e-10 39.8 0.0 2.0 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|20090712|ref|NP_616787.1| - 5.9e-09 35.7 0.0 1.8e-08 34.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|20090712|ref|NP_616787.1| - 4.8e-06 26.6 0.1 4.5e-05 23.5 0.0 2.4 2 1 1 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|20090712|ref|NP_616787.1| - 5.3e-06 27.2 0.8 5.8e-05 23.8 0.0 3.1 3 1 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|20090712|ref|NP_616787.1| - 1.9e-05 24.8 0.3 0.00024 21.2 0.0 2.7 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|20090712|ref|NP_616787.1| - 0.00015 21.4 0.1 0.00043 19.9 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|20090712|ref|NP_616787.1| - 0.00018 20.9 0.1 0.0016 17.9 0.0 2.3 2 1 0 2 2 2 1 IstB-like ATP binding protein RuvB_N PF05496.7 gi|20090712|ref|NP_616787.1| - 0.00028 19.9 0.0 0.0008 18.5 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_PrkA PF08298.6 gi|20090712|ref|NP_616787.1| - 0.00043 19.0 0.0 0.00084 18.1 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain Birna_VP4 PF01768.11 gi|20090712|ref|NP_616787.1| - 0.00066 18.8 0.3 0.0015 17.6 0.2 1.5 1 0 0 1 1 1 1 Birnavirus VP4 protein AAA_14 PF13173.1 gi|20090712|ref|NP_616787.1| - 0.0012 18.7 0.0 0.0039 17.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|20090712|ref|NP_616787.1| - 0.0013 18.5 0.0 0.0032 17.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|20090712|ref|NP_616787.1| - 0.0014 18.2 0.0 0.0071 15.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|20090712|ref|NP_616787.1| - 0.0015 18.1 0.8 0.0053 16.3 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|20090712|ref|NP_616787.1| - 0.0026 16.9 0.1 0.006 15.7 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin Rad17 PF03215.10 gi|20090712|ref|NP_616787.1| - 0.0031 16.2 0.0 0.0065 15.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein NTPase_1 PF03266.10 gi|20090712|ref|NP_616787.1| - 0.0049 16.5 0.8 0.037 13.7 0.0 2.9 2 1 1 3 3 3 1 NTPase TIP49 PF06068.8 gi|20090712|ref|NP_616787.1| - 0.0062 15.3 0.1 0.0062 15.3 0.1 2.6 3 0 0 3 3 3 1 TIP49 C-terminus DUF815 PF05673.8 gi|20090712|ref|NP_616787.1| - 0.0077 15.1 0.0 0.022 13.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|20090712|ref|NP_616787.1| - 0.014 15.6 0.1 0.014 15.6 0.1 3.6 5 0 0 5 5 3 0 AAA domain KAP_NTPase PF07693.9 gi|20090712|ref|NP_616787.1| - 0.018 14.0 0.3 0.34 9.8 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain AAA_30 PF13604.1 gi|20090712|ref|NP_616787.1| - 0.022 14.3 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|20090712|ref|NP_616787.1| - 0.024 14.1 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|20090712|ref|NP_616787.1| - 0.03 13.9 0.0 0.22 11.1 0.0 2.2 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|20090712|ref|NP_616787.1| - 0.032 14.4 0.0 0.17 12.0 0.0 2.4 2 0 0 2 2 1 0 RNA helicase AAA_25 PF13481.1 gi|20090712|ref|NP_616787.1| - 0.036 13.4 0.0 0.078 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|20090712|ref|NP_616787.1| - 0.054 12.3 0.0 0.16 10.8 0.0 1.8 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|20090712|ref|NP_616787.1| - 0.055 13.0 0.5 0.13 11.8 0.4 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|20090712|ref|NP_616787.1| - 0.083 12.8 0.1 0.26 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|20090712|ref|NP_616787.1| - 0.11 11.3 0.0 0.27 10.0 0.0 1.6 1 1 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.22 gi|20090712|ref|NP_616787.1| - 0.11 12.7 0.8 0.42 10.8 0.1 2.3 2 0 0 2 2 2 0 ABC transporter AAA_11 PF13086.1 gi|20090712|ref|NP_616787.1| - 1.8 8.0 4.9 0.47 9.9 0.0 2.1 1 1 1 2 2 2 0 AAA domain MarR PF01047.17 gi|20090713|ref|NP_616788.1| - 5.6e-11 41.9 0.0 9.6e-11 41.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|20090713|ref|NP_616788.1| - 7.9e-10 38.2 0.0 2.2e-09 36.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|20090713|ref|NP_616788.1| - 4.1e-08 33.4 0.0 1.5e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|20090713|ref|NP_616788.1| - 0.00041 20.0 0.1 0.0015 18.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|20090713|ref|NP_616788.1| - 0.0013 18.5 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain KIP1 PF07765.7 gi|20090713|ref|NP_616788.1| - 0.002 17.9 0.1 0.008 16.0 0.0 2.0 2 0 0 2 2 2 1 KIP1-like protein HTH_24 PF13412.1 gi|20090713|ref|NP_616788.1| - 0.0067 15.7 0.0 0.031 13.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|20090713|ref|NP_616788.1| - 0.064 13.2 0.0 0.099 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain UvrD-helicase PF00580.16 gi|20090714|ref|NP_616789.1| - 3.1e-21 76.0 0.0 3.1e-21 76.0 0.0 2.2 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|20090714|ref|NP_616789.1| - 3.3e-10 39.9 12.2 8.9e-07 28.6 0.1 3.0 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|20090714|ref|NP_616789.1| - 6.6e-05 23.0 0.1 0.0002 21.4 0.0 1.9 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|20090714|ref|NP_616789.1| - 0.001 18.6 0.0 0.56 9.6 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|20090714|ref|NP_616789.1| - 0.016 14.4 0.0 1.1 8.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein UvrD-helicase PF00580.16 gi|20090715|ref|NP_616790.1| - 3.9e-11 42.8 0.0 4.5e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.1 gi|20090715|ref|NP_616790.1| - 1.2e-08 34.5 0.0 1.6e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|20090715|ref|NP_616790.1| - 0.024 14.2 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20090715|ref|NP_616790.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|20090716|ref|NP_616791.1| - 5e-30 104.8 35.2 5e-30 104.8 24.4 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|20090716|ref|NP_616791.1| - 2.2e-20 73.7 41.4 1.6e-13 51.2 11.7 3.6 3 1 0 4 4 4 2 AAA domain DUF2813 PF11398.3 gi|20090716|ref|NP_616791.1| - 3.4e-11 42.8 2.5 4.2e-08 32.6 0.1 2.8 2 1 1 3 3 3 2 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|20090716|ref|NP_616791.1| - 3.7e-11 43.7 37.2 9.2e-09 35.9 25.8 3.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20090716|ref|NP_616791.1| - 7.6e-10 38.3 2.4 5.4e-08 32.3 0.2 2.5 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20090716|ref|NP_616791.1| - 0.0086 15.5 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3887 PF13026.1 gi|20090716|ref|NP_616791.1| - 0.041 14.1 1.0 0.041 14.1 0.7 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3887) DSPc PF00782.15 gi|20090717|ref|NP_616792.1| - 2.2e-06 27.2 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|20090717|ref|NP_616792.1| - 0.0003 20.1 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.1 gi|20090717|ref|NP_616792.1| - 0.019 15.1 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Tyrosine phosphatase family PTPlike_phytase PF14566.1 gi|20090717|ref|NP_616792.1| - 0.067 13.2 0.0 0.098 12.7 0.0 1.2 1 0 0 1 1 1 0 Inositol hexakisphosphate Fic PF02661.13 gi|20090718|ref|NP_616793.1| - 7.7e-21 74.6 0.0 7.3e-20 71.4 0.0 2.4 2 0 0 2 2 2 1 Fic/DOC family HTH_DeoR PF08220.7 gi|20090718|ref|NP_616793.1| - 0.00012 21.5 0.0 0.00032 20.1 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF4172 PF13776.1 gi|20090718|ref|NP_616793.1| - 0.00038 20.4 0.1 0.0026 17.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4172) Fic_N PF13784.1 gi|20090718|ref|NP_616793.1| - 0.0045 16.8 0.3 0.0045 16.8 0.2 1.8 2 0 0 2 2 2 1 Fic/DOC family N-terminal TrmB PF01978.14 gi|20090718|ref|NP_616793.1| - 0.0057 16.3 0.3 0.024 14.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|20090718|ref|NP_616793.1| - 0.013 15.1 0.0 0.044 13.3 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|20090718|ref|NP_616793.1| - 0.031 13.9 0.0 0.097 12.3 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|20090718|ref|NP_616793.1| - 0.057 13.7 0.6 0.34 11.2 0.0 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain ATP-synt_ab_C PF00306.22 gi|20090718|ref|NP_616793.1| - 0.059 13.8 3.5 0.37 11.2 0.1 3.1 3 2 0 3 3 3 0 ATP synthase alpha/beta chain, C terminal domain LexA_DNA_bind PF01726.11 gi|20090718|ref|NP_616793.1| - 0.095 12.2 0.2 0.34 10.4 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain MBOAT_2 PF13813.1 gi|20090719|ref|NP_616794.1| - 0.22 11.6 2.8 0.3 11.2 2.0 1.4 1 1 0 1 1 1 0 Membrane bound O-acyl transferase family Peptidase_M3 PF01432.15 gi|20090720|ref|NP_616795.1| - 1.8e-26 93.1 6.0 2.9e-26 92.5 4.2 1.3 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|20090720|ref|NP_616795.1| - 9.1e-08 32.0 0.3 3e-07 30.3 0.2 2.0 1 0 0 1 1 1 1 Oligopeptidase F DUF2470 PF10615.4 gi|20090720|ref|NP_616795.1| - 0.13 12.5 0.2 0.65 10.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2470) MatE PF01554.13 gi|20090722|ref|NP_616797.1| - 0.011 15.3 2.4 0.013 15.1 1.7 1.2 1 0 0 1 1 1 0 MatE DUF4117 PF13491.1 gi|20090722|ref|NP_616797.1| - 0.044 13.2 3.1 0.056 12.8 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) TM2 PF05154.11 gi|20090722|ref|NP_616797.1| - 0.053 13.7 5.7 0.087 13.0 3.9 1.5 1 1 0 1 1 1 0 TM2 domain DUF2167 PF09935.4 gi|20090722|ref|NP_616797.1| - 0.52 9.1 3.2 0.57 8.9 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2167) TPR_11 PF13414.1 gi|20090723|ref|NP_616798.1| - 1.8e-42 142.8 8.3 3.4e-16 58.6 0.2 4.2 3 1 1 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|20090723|ref|NP_616798.1| - 2.7e-42 140.6 10.9 2.3e-08 33.2 0.2 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090723|ref|NP_616798.1| - 4.2e-38 126.1 16.6 2e-07 30.3 0.2 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090723|ref|NP_616798.1| - 1.9e-33 114.3 13.2 2.1e-13 50.5 1.8 5.1 2 2 2 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090723|ref|NP_616798.1| - 1.7e-32 108.8 4.9 0.0001 22.1 0.0 6.9 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090723|ref|NP_616798.1| - 5e-27 91.6 7.2 9.2e-05 21.9 0.3 7.2 5 2 3 8 8 8 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090723|ref|NP_616798.1| - 2.7e-25 88.4 12.9 1.2e-06 28.7 0.1 4.5 2 2 4 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20090723|ref|NP_616798.1| - 2.4e-23 81.7 0.3 3.6e-07 29.9 0.0 4.5 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090723|ref|NP_616798.1| - 7.4e-21 73.8 10.4 1.5e-08 34.4 0.1 4.6 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090723|ref|NP_616798.1| - 7.9e-21 72.6 12.6 0.00063 20.1 0.1 7.0 2 2 5 7 7 7 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090723|ref|NP_616798.1| - 2.5e-17 62.0 6.1 0.011 16.1 0.0 7.0 7 0 0 7 7 7 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090723|ref|NP_616798.1| - 6.1e-16 58.3 0.1 3.2e-07 30.3 0.0 3.3 1 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|20090723|ref|NP_616798.1| - 6.6e-11 41.1 4.7 0.28 11.0 0.1 6.5 7 2 0 7 7 7 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|20090723|ref|NP_616798.1| - 2.2e-08 33.8 4.5 0.14 12.0 0.0 4.3 4 1 1 5 5 5 3 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|20090723|ref|NP_616798.1| - 1.1e-07 31.2 2.8 0.026 13.5 0.3 3.6 2 1 1 3 3 3 3 Tetratricopeptide repeat ChAPs PF09295.5 gi|20090723|ref|NP_616798.1| - 6.1e-07 28.5 0.0 0.021 13.6 0.0 2.1 1 1 0 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.1 gi|20090723|ref|NP_616798.1| - 1.2e-06 28.5 0.1 0.15 12.1 0.0 4.0 2 2 3 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|20090723|ref|NP_616798.1| - 5.2e-06 25.4 1.4 0.027 13.2 0.0 3.5 1 1 1 4 4 4 3 NMDA receptor-regulated protein 1 BTAD PF03704.12 gi|20090723|ref|NP_616798.1| - 0.00012 22.4 6.7 0.7 10.1 0.0 3.8 3 1 1 4 4 4 2 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|20090723|ref|NP_616798.1| - 0.00021 21.1 8.4 0.041 13.8 0.1 4.5 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|20090723|ref|NP_616798.1| - 0.00059 19.6 0.9 0.14 12.0 0.0 3.3 2 2 1 3 3 3 1 Anaphase-promoting complex subunit 5 FAT PF02259.18 gi|20090723|ref|NP_616798.1| - 0.004 16.1 1.9 0.13 11.2 1.3 3.1 1 1 0 1 1 1 1 FAT domain SNAP PF14938.1 gi|20090723|ref|NP_616798.1| - 0.007 15.5 1.8 1.7 7.6 0.0 2.7 2 1 0 2 2 2 2 Soluble NSF attachment protein, SNAP Alkyl_sulf_dimr PF14863.1 gi|20090723|ref|NP_616798.1| - 0.0074 16.5 0.1 6.2 7.0 0.0 2.8 2 1 1 3 3 3 0 Alkyl sulfatase dimerisation PPR PF01535.15 gi|20090723|ref|NP_616798.1| - 0.0084 16.0 6.0 3.1 7.9 0.1 4.9 5 0 0 5 5 5 1 PPR repeat DUF3856 PF12968.2 gi|20090723|ref|NP_616798.1| - 0.011 15.5 5.4 0.25 11.1 0.0 3.9 3 1 2 5 5 5 0 Domain of Unknown Function (DUF3856) APP_E2 PF12925.2 gi|20090723|ref|NP_616798.1| - 0.036 13.6 0.0 0.14 11.6 0.0 1.9 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein Paf67 PF10255.4 gi|20090723|ref|NP_616798.1| - 0.05 12.4 0.0 2.5 6.9 0.0 2.1 1 1 1 2 2 2 0 RNA polymerase I-associated factor PAF67 TruB_N PF01509.13 gi|20090723|ref|NP_616798.1| - 0.11 12.6 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) TPR_21 PF09976.4 gi|20090723|ref|NP_616798.1| - 0.12 12.2 2.8 0.94 9.4 0.1 3.2 3 2 1 4 4 4 0 Tetratricopeptide repeat Exonuc_VII_S PF02609.11 gi|20090723|ref|NP_616798.1| - 4.7 7.0 12.3 17 5.2 0.0 4.9 6 0 0 6 6 6 0 Exonuclease VII small subunit Phosphorylase PF00343.15 gi|20090724|ref|NP_616799.1| - 8.3e-21 73.5 0.0 1.4e-16 59.6 0.0 2.9 3 0 0 3 3 3 2 Carbohydrate phosphorylase Glyco_transf_5 PF08323.6 gi|20090724|ref|NP_616799.1| - 0.068 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain FTH PF01827.22 gi|20090725|ref|NP_616800.1| - 2.6 7.6 5.9 3.9 7.0 2.9 2.1 1 1 1 2 2 2 0 FTH domain Ribosomal_S25 PF03297.10 gi|20090726|ref|NP_616801.1| - 0.032 14.2 0.0 0.032 14.2 0.0 1.0 1 0 0 1 1 1 0 S25 ribosomal protein MarR_2 PF12802.2 gi|20090726|ref|NP_616801.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 MarR family HisKA_2 PF07568.7 gi|20090728|ref|NP_616803.1| - 1e-30 105.3 1.0 1e-30 105.3 0.7 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|20090728|ref|NP_616803.1| - 3.1e-18 65.6 0.0 3.9e-17 62.1 0.0 2.5 2 1 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|20090728|ref|NP_616803.1| - 1.1e-16 61.6 0.1 1.9e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|20090728|ref|NP_616803.1| - 3e-12 46.2 0.0 9.8e-12 44.5 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|20090728|ref|NP_616803.1| - 0.0016 18.2 0.1 0.0047 16.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain ATP-grasp_2 PF08442.5 gi|20090728|ref|NP_616803.1| - 0.0091 15.3 0.9 0.017 14.5 0.1 1.8 2 0 0 2 2 2 1 ATP-grasp domain PAS_4 PF08448.5 gi|20090728|ref|NP_616803.1| - 0.016 15.2 0.0 0.053 13.5 0.0 1.9 2 0 0 2 2 2 0 PAS fold HWE_HK PF07536.9 gi|20090728|ref|NP_616803.1| - 0.019 15.4 1.8 0.049 14.0 0.2 2.4 2 1 0 2 2 2 0 HWE histidine kinase GAF_3 PF13492.1 gi|20090728|ref|NP_616803.1| - 0.045 13.8 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 GAF domain Phage_HK97_TLTM PF06120.6 gi|20090728|ref|NP_616803.1| - 1.6 7.9 5.7 0.24 10.6 0.3 2.1 2 1 0 2 2 2 0 Tail length tape measure protein Terminase_5 PF06056.7 gi|20090729|ref|NP_616804.1| - 3.5e-05 23.2 0.0 5.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|20090729|ref|NP_616804.1| - 6e-05 22.5 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20090729|ref|NP_616804.1| - 0.00064 19.6 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20090729|ref|NP_616804.1| - 0.0042 17.2 0.0 0.0062 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|20090729|ref|NP_616804.1| - 0.0057 16.0 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20090729|ref|NP_616804.1| - 0.014 15.2 2.9 0.023 14.5 2.0 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20090729|ref|NP_616804.1| - 0.018 14.5 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_38 PF13936.1 gi|20090729|ref|NP_616804.1| - 0.035 13.6 0.0 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2387 PF09526.5 gi|20090729|ref|NP_616804.1| - 0.055 13.4 0.7 0.095 12.6 0.5 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20090729|ref|NP_616804.1| - 0.055 13.2 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20090729|ref|NP_616804.1| - 0.088 12.7 2.4 1.5 8.8 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20090729|ref|NP_616804.1| - 0.13 12.1 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20090729|ref|NP_616804.1| - 0.72 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20090729|ref|NP_616804.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DDE_Tnp_IS1 PF03400.8 gi|20090730|ref|NP_616805.1| - 7.3e-13 48.7 0.2 8.2e-13 48.5 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase rve PF00665.21 gi|20090732|ref|NP_616807.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20090732|ref|NP_616807.1| - 8.2e-07 28.4 0.2 2.1e-06 27.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20090732|ref|NP_616807.1| - 1.4e-05 24.8 0.2 3.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.1 gi|20090732|ref|NP_616807.1| - 1.6e-05 24.3 0.0 5.1e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|20090732|ref|NP_616807.1| - 3e-05 23.5 0.4 0.00012 21.5 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20090732|ref|NP_616807.1| - 0.0072 16.4 0.0 0.19 11.9 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|20090732|ref|NP_616807.1| - 0.0094 15.7 0.3 0.033 14.0 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_Tnp_Tc3_1 PF11427.3 gi|20090732|ref|NP_616807.1| - 0.013 15.1 0.4 0.044 13.4 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.7 gi|20090732|ref|NP_616807.1| - 0.017 14.6 0.0 0.048 13.2 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20090732|ref|NP_616807.1| - 0.023 14.6 0.2 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|20090732|ref|NP_616807.1| - 0.025 14.7 0.1 0.093 12.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|20090732|ref|NP_616807.1| - 0.038 13.3 0.1 0.087 12.1 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.6 gi|20090732|ref|NP_616807.1| - 0.062 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20090732|ref|NP_616807.1| - 0.068 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20090732|ref|NP_616807.1| - 0.09 12.2 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 IstB_IS21 PF01695.12 gi|20090733|ref|NP_616808.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20090733|ref|NP_616808.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20090733|ref|NP_616808.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20090733|ref|NP_616808.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20090733|ref|NP_616808.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20090733|ref|NP_616808.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20090733|ref|NP_616808.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20090733|ref|NP_616808.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20090733|ref|NP_616808.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20090733|ref|NP_616808.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20090733|ref|NP_616808.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20090733|ref|NP_616808.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20090733|ref|NP_616808.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20090733|ref|NP_616808.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20090733|ref|NP_616808.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20090733|ref|NP_616808.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20090733|ref|NP_616808.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20090733|ref|NP_616808.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20090733|ref|NP_616808.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20090733|ref|NP_616808.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20090733|ref|NP_616808.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20090733|ref|NP_616808.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20090733|ref|NP_616808.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20090733|ref|NP_616808.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20090733|ref|NP_616808.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20090733|ref|NP_616808.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20090733|ref|NP_616808.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20090733|ref|NP_616808.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family Molybdopterin PF00384.17 gi|20090734|ref|NP_616809.1| - 0.041 12.6 0.5 0.056 12.1 0.3 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase z-alpha PF02295.12 gi|20090734|ref|NP_616809.1| - 0.078 12.7 0.1 0.29 10.9 0.1 2.0 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain LAGLIDADG_WhiA PF14527.1 gi|20090734|ref|NP_616809.1| - 0.09 12.6 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain DUF3797 PF12677.2 gi|20090735|ref|NP_616810.1| - 0.019 14.6 1.2 0.28 10.8 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) CpXC PF14353.1 gi|20090735|ref|NP_616810.1| - 0.044 13.7 2.2 0.12 12.2 1.5 1.7 1 0 0 1 1 1 0 CpXC protein zf-H2C2_2 PF13465.1 gi|20090735|ref|NP_616810.1| - 0.15 12.3 3.7 3.1 8.2 0.0 3.1 3 0 0 3 3 3 0 Zinc-finger double domain NCD3G PF07562.9 gi|20090735|ref|NP_616810.1| - 0.2 11.3 2.6 3.1 7.5 0.5 2.3 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR A2L_zn_ribbon PF08792.5 gi|20090735|ref|NP_616810.1| - 0.21 11.0 0.3 0.21 11.0 0.2 2.6 2 0 0 2 2 2 0 A2L zinc ribbon domain GCC2_GCC3 PF07699.8 gi|20090735|ref|NP_616810.1| - 0.25 10.9 5.5 1.1 8.8 0.9 2.5 2 0 0 2 2 2 0 GCC2 and GCC3 PyrI_C PF02748.10 gi|20090735|ref|NP_616810.1| - 0.61 9.5 5.2 1.2 8.6 1.0 2.6 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2 PF00096.21 gi|20090735|ref|NP_616810.1| - 7.8 7.0 6.7 35 5.0 0.2 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF4208 PF13907.1 gi|20090736|ref|NP_616811.1| - 0.14 12.4 0.2 0.39 10.9 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4208) RelA_SpoT PF04607.12 gi|20090737|ref|NP_616812.1| - 7.8e-06 25.8 1.4 1.8e-05 24.6 0.1 2.1 2 0 0 2 2 2 1 Region found in RelA / SpoT proteins DUF3692 PF12469.3 gi|20090739|ref|NP_616814.1| - 0.0025 18.0 0.3 0.33 11.1 0.0 2.2 2 0 0 2 2 2 2 CRISPR-associated protein DUF1565 PF07602.6 gi|20090739|ref|NP_616814.1| - 0.069 12.2 0.3 0.23 10.5 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1565) rve PF00665.21 gi|20090740|ref|NP_616815.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20090740|ref|NP_616815.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20090740|ref|NP_616815.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20090740|ref|NP_616815.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20090740|ref|NP_616815.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20090740|ref|NP_616815.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal AAA_14 PF13173.1 gi|20090741|ref|NP_616816.1| - 0.0041 17.0 0.8 0.0041 17.0 0.6 3.0 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|20090741|ref|NP_616816.1| - 0.0063 16.6 0.0 0.14 12.2 0.0 2.9 3 1 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|20090741|ref|NP_616816.1| - 0.036 14.8 0.1 0.3 11.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|20090741|ref|NP_616816.1| - 0.066 13.5 0.0 0.24 11.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter DUF760 PF05542.6 gi|20090741|ref|NP_616816.1| - 0.12 12.5 0.4 0.3 11.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF760) Pentapeptide PF00805.17 gi|20090742|ref|NP_616817.1| - 9.1e-97 315.2 84.1 1.7e-17 62.2 1.3 8.8 2 2 8 10 10 10 10 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|20090742|ref|NP_616817.1| - 1.4e-39 133.7 0.1 1.7e-12 46.9 0.0 4.5 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|20090742|ref|NP_616817.1| - 5.9e-34 115.6 0.0 7.6e-06 25.7 0.0 7.3 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Adenine_glyco PF03352.8 gi|20090743|ref|NP_616818.1| - 0.025 14.1 0.2 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 Methyladenine glycosylase KH_5 PF13184.1 gi|20090743|ref|NP_616818.1| - 0.17 11.7 0.8 0.39 10.5 0.0 2.1 2 1 1 3 3 3 0 NusA-like KH domain Mem_trans PF03547.13 gi|20090744|ref|NP_616819.1| - 0.0026 16.1 0.1 0.0027 16.0 0.1 1.1 1 0 0 1 1 1 1 Membrane transport protein Cation_efflux PF01545.16 gi|20090744|ref|NP_616819.1| - 0.0054 15.8 0.3 0.0062 15.6 0.2 1.1 1 0 0 1 1 1 1 Cation efflux family Peptidase_S9_N PF02897.10 gi|20090744|ref|NP_616819.1| - 0.018 13.6 0.0 0.019 13.5 0.0 1.0 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain Mannosyl_trans PF05007.8 gi|20090744|ref|NP_616819.1| - 0.028 14.0 0.6 0.083 12.5 0.1 1.8 1 1 1 2 2 2 0 Mannosyltransferase (PIG-M) Tiny_TM_bacill PF09680.5 gi|20090744|ref|NP_616819.1| - 0.18 11.2 4.0 0.29 10.5 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (Tiny_TM_bacill) DUF927 PF06048.6 gi|20090745|ref|NP_616820.1| - 1.5e-62 211.4 0.0 2.2e-62 210.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF927) MULE PF10551.4 gi|20090746|ref|NP_616821.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20090746|ref|NP_616821.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20090746|ref|NP_616821.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20090746|ref|NP_616821.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20090746|ref|NP_616821.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20090746|ref|NP_616821.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20090746|ref|NP_616821.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20090746|ref|NP_616821.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger DUF2239 PF09998.4 gi|20090749|ref|NP_616824.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2239) HTH_29 PF13551.1 gi|20090749|ref|NP_616824.1| - 0.15 12.2 0.2 0.23 11.6 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn helix MULE PF10551.4 gi|20090750|ref|NP_616825.1| - 9.5e-13 48.1 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20090750|ref|NP_616825.1| - 0.022 13.3 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20090750|ref|NP_616825.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20090750|ref|NP_616825.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20090750|ref|NP_616825.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20090750|ref|NP_616825.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20090750|ref|NP_616825.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20090750|ref|NP_616825.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger ADH_zinc_N PF00107.21 gi|20090751|ref|NP_616826.1| - 1.6e-20 72.9 0.7 2.8e-20 72.1 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|20090751|ref|NP_616826.1| - 1.4e-13 50.5 0.0 4.7e-13 48.8 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|20090751|ref|NP_616826.1| - 6.6e-06 27.0 0.0 1.8e-05 25.6 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase FMN_red PF03358.10 gi|20090752|ref|NP_616827.1| - 1.7e-23 82.8 0.0 2.4e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20090752|ref|NP_616827.1| - 2.3e-13 50.0 0.0 3.1e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold PKD PF00801.15 gi|20090753|ref|NP_616828.1| - 6.6e-194 628.0 128.8 6.5e-18 64.2 1.3 12.8 12 0 0 12 12 12 12 PKD domain Lactonase PF10282.4 gi|20090753|ref|NP_616828.1| - 2.3e-35 122.2 17.7 9.9e-08 31.4 0.0 8.4 3 2 5 8 8 8 5 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.11 gi|20090753|ref|NP_616828.1| - 5.4e-27 94.0 16.7 1.2e-06 27.0 0.2 6.1 2 2 4 6 6 6 6 Cytochrome D1 heme domain SGL PF08450.7 gi|20090753|ref|NP_616828.1| - 2.8e-18 66.2 26.2 1.6e-06 27.7 0.4 7.8 3 2 4 7 7 7 6 SMP-30/Gluconolaconase/LRE-like region NHL PF01436.16 gi|20090753|ref|NP_616828.1| - 9.9e-16 56.8 39.6 0.057 13.4 0.0 12.7 12 0 0 12 12 12 5 NHL repeat Arylesterase PF01731.15 gi|20090753|ref|NP_616828.1| - 7.5e-12 45.0 23.8 0.0072 16.2 0.0 11.7 3 2 10 13 13 13 2 Arylesterase SBP56 PF05694.6 gi|20090753|ref|NP_616828.1| - 4.2e-07 28.8 0.3 0.49 8.8 0.0 6.4 3 2 1 5 5 5 1 56kDa selenium binding protein (SBP56) PD40 PF07676.7 gi|20090753|ref|NP_616828.1| - 1.2e-06 28.0 0.9 8.6 6.1 0.0 7.3 7 0 0 7 7 7 1 WD40-like Beta Propeller Repeat DUF4221 PF13970.1 gi|20090753|ref|NP_616828.1| - 3.4e-06 26.6 0.0 3.3 6.9 0.0 5.4 2 2 2 5 5 5 1 Domain of unknown function (DUF4221) DUF1513 PF07433.6 gi|20090753|ref|NP_616828.1| - 1.5e-05 24.0 8.4 0.052 12.4 0.0 5.5 3 2 1 5 5 5 2 Protein of unknown function (DUF1513) A2M_N PF01835.14 gi|20090753|ref|NP_616828.1| - 3.3e-05 24.0 37.6 5 7.4 0.0 12.2 10 2 2 12 12 12 1 MG2 domain ThaI PF15514.1 gi|20090753|ref|NP_616828.1| - 0.0012 18.2 2.7 2.3 7.4 0.1 4.3 3 1 1 4 4 4 1 Restriction endonuclease ThaI DUF1918 PF08940.6 gi|20090753|ref|NP_616828.1| - 0.0068 15.7 0.0 1.5 8.2 0.0 4.4 4 0 0 4 4 4 1 Domain of unknown function (DUF1918) DUF4160 PF13711.1 gi|20090753|ref|NP_616828.1| - 0.15 11.9 0.0 42 4.0 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4160) ATG2_CAD PF13329.1 gi|20090753|ref|NP_616828.1| - 0.21 11.1 2.9 4.3 6.8 0.0 4.3 5 0 0 5 5 5 0 Autophagy-related protein 2 CAD motif DUF3876 PF12992.2 gi|20090753|ref|NP_616828.1| - 0.43 10.5 19.4 27 4.8 0.0 8.6 10 0 0 10 10 10 0 Domain of unknown function, B. Theta Gene description (DUF3876) CstA PF02554.9 gi|20090754|ref|NP_616829.1| - 4.4e-77 259.2 21.4 9.6e-45 152.8 3.6 2.7 1 1 1 3 3 3 2 Carbon starvation protein CstA DUF4161 PF13722.1 gi|20090754|ref|NP_616829.1| - 2.8e-23 82.6 4.7 2.8e-23 82.6 3.3 2.9 2 1 0 2 2 2 1 C-terminal domain on CstA (DUF4161) DUF1699 PF08004.6 gi|20090755|ref|NP_616830.1| - 6.2e-67 223.0 1.5 7e-67 222.9 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.9 gi|20090755|ref|NP_616830.1| - 0.019 15.2 0.1 0.03 14.5 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) LKAAEAR PF15478.1 gi|20090755|ref|NP_616830.1| - 0.028 14.6 0.2 0.062 13.5 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function with LKAAEAR motif TPR_2 PF07719.12 gi|20090756|ref|NP_616831.1| - 2.7e-07 29.9 0.0 6e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090756|ref|NP_616831.1| - 3.3e-06 26.4 0.0 6.6e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090756|ref|NP_616831.1| - 2.2e-05 24.0 0.0 4.4e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 TPR repeat TPR_8 PF13181.1 gi|20090756|ref|NP_616831.1| - 0.0025 17.4 0.0 0.0073 16.0 0.0 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090756|ref|NP_616831.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090756|ref|NP_616831.1| - 0.037 14.7 0.0 0.07 13.8 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090756|ref|NP_616831.1| - 0.06 14.0 0.0 0.14 12.8 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090756|ref|NP_616831.1| - 0.06 13.6 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090756|ref|NP_616831.1| - 0.13 12.7 0.0 0.37 11.3 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat PM0188 PF11477.3 gi|20090757|ref|NP_616832.1| - 0.091 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Sialyltransferase PMO188 dTDP_sugar_isom PF00908.12 gi|20090758|ref|NP_616833.1| - 4.3e-15 55.4 0.0 5.3e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|20090758|ref|NP_616833.1| - 5.6e-13 48.5 0.0 7.7e-13 48.0 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|20090758|ref|NP_616833.1| - 0.00044 19.6 0.1 0.95 9.0 0.0 2.2 2 0 0 2 2 2 2 Cupin domain ABC_tran PF00005.22 gi|20090759|ref|NP_616834.1| - 1.1e-23 84.0 0.0 1.5e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|20090759|ref|NP_616834.1| - 1.3e-05 25.3 0.0 2.3e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|20090759|ref|NP_616834.1| - 1.8e-05 24.8 0.3 0.0032 17.4 0.2 2.2 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20090759|ref|NP_616834.1| - 0.0001 23.1 0.0 0.00012 22.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20090759|ref|NP_616834.1| - 0.0017 18.6 0.0 0.0043 17.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20090759|ref|NP_616834.1| - 0.0017 17.5 0.1 0.003 16.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|20090759|ref|NP_616834.1| - 0.003 16.8 0.6 0.11 11.6 0.0 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20090759|ref|NP_616834.1| - 0.0031 16.9 0.2 0.0031 16.9 0.1 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|20090759|ref|NP_616834.1| - 0.0068 15.8 0.6 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|20090759|ref|NP_616834.1| - 0.0076 15.0 0.0 0.013 14.2 0.0 1.3 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|20090759|ref|NP_616834.1| - 0.0099 15.5 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|20090759|ref|NP_616834.1| - 0.01 15.2 0.0 0.11 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20090759|ref|NP_616834.1| - 0.011 15.7 0.4 0.013 15.4 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|20090759|ref|NP_616834.1| - 0.029 14.8 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein UPF0079 PF02367.12 gi|20090759|ref|NP_616834.1| - 0.053 13.1 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|20090759|ref|NP_616834.1| - 0.053 13.0 0.2 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|20090759|ref|NP_616834.1| - 0.082 12.8 0.2 0.17 11.8 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DLIC PF05783.6 gi|20090759|ref|NP_616834.1| - 0.088 11.4 0.3 3.3 6.2 0.0 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA PF00004.24 gi|20090759|ref|NP_616834.1| - 0.11 12.6 0.3 0.43 10.7 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|20090759|ref|NP_616834.1| - 0.12 12.1 0.7 13 5.4 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_10 PF12846.2 gi|20090759|ref|NP_616834.1| - 0.19 11.1 0.5 0.48 9.8 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|20090760|ref|NP_616835.1| - 2.5e-21 76.4 0.0 3.6e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20090760|ref|NP_616835.1| - 1.6e-10 41.1 0.0 2.9e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20090760|ref|NP_616835.1| - 1.4e-06 28.5 0.0 0.00054 20.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|20090760|ref|NP_616835.1| - 3.4e-06 27.2 0.0 6.6e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20090760|ref|NP_616835.1| - 0.0005 20.1 0.0 0.00087 19.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|20090760|ref|NP_616835.1| - 0.0016 17.9 0.1 0.0033 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain Mg_chelatase PF01078.16 gi|20090760|ref|NP_616835.1| - 0.0018 17.4 0.0 0.0031 16.7 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|20090760|ref|NP_616835.1| - 0.0029 16.8 0.4 0.031 13.5 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20090760|ref|NP_616835.1| - 0.0046 16.4 0.0 0.009 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|20090760|ref|NP_616835.1| - 0.0053 16.4 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|20090760|ref|NP_616835.1| - 0.012 15.0 0.3 0.14 11.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|20090760|ref|NP_616835.1| - 0.014 14.4 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|20090760|ref|NP_616835.1| - 0.073 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|20090760|ref|NP_616835.1| - 0.089 12.5 0.1 0.29 10.9 0.1 1.8 2 1 0 2 2 2 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|20090760|ref|NP_616835.1| - 0.1 11.7 1.2 0.25 10.5 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20090760|ref|NP_616835.1| - 0.11 12.4 0.3 0.45 10.4 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Topo_C_assoc PF14370.1 gi|20090760|ref|NP_616835.1| - 0.12 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal topoisomerase domain nsp8 PF08717.5 gi|20090760|ref|NP_616835.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 nsp8 replicase BPD_transp_1 PF00528.17 gi|20090761|ref|NP_616836.1| - 4.9e-22 78.3 8.7 4.9e-22 78.3 6.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1719 PF08224.6 gi|20090761|ref|NP_616836.1| - 0.15 11.0 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) PrgI PF12666.2 gi|20090761|ref|NP_616836.1| - 0.31 11.1 5.4 1.5 9.0 2.7 2.7 1 1 1 2 2 2 0 PrgI family protein BPD_transp_1 PF00528.17 gi|20090762|ref|NP_616837.1| - 4.2e-38 130.7 10.8 4.2e-38 130.7 7.5 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Trep_Strep PF09605.5 gi|20090762|ref|NP_616837.1| - 0.012 15.2 0.4 0.012 15.2 0.3 2.8 3 1 0 3 3 3 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF846 PF05832.7 gi|20090762|ref|NP_616837.1| - 1.3 8.7 5.6 0.23 11.1 1.1 1.9 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF846) SBP_bac_5 PF00496.17 gi|20090763|ref|NP_616838.1| - 1.5e-69 234.6 6.6 2e-69 234.2 4.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Acetyltransf_9 PF13527.1 gi|20090763|ref|NP_616838.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SBP_bac_5 PF00496.17 gi|20090764|ref|NP_616839.1| - 4.6e-78 262.6 4.5 6.3e-78 262.2 3.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_5 PF00496.17 gi|20090765|ref|NP_616840.1| - 1.4e-73 247.8 4.7 1.9e-73 247.4 3.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Neurexophilin PF06312.7 gi|20090766|ref|NP_616841.1| - 0.0025 17.0 0.0 0.0029 16.9 0.0 1.1 1 0 0 1 1 1 1 Neurexophilin ProRS-C_2 PF09181.5 gi|20090766|ref|NP_616841.1| - 0.057 13.3 0.4 0.095 12.6 0.3 1.3 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal HAD_2 PF13419.1 gi|20090767|ref|NP_616842.1| - 3.8e-16 59.8 0.0 4.9e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20090767|ref|NP_616842.1| - 1.8e-08 33.9 0.0 2.7e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like PGP_phosphatase PF09419.5 gi|20090767|ref|NP_616842.1| - 0.00051 19.4 0.0 0.00074 18.9 0.0 1.3 1 1 0 1 1 1 1 Mitochondrial PGP phosphatase Hydrolase PF00702.21 gi|20090767|ref|NP_616842.1| - 0.0068 16.8 0.0 0.0084 16.5 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Adenylsucc_synt PF00709.16 gi|20090768|ref|NP_616843.1| - 5e-154 512.9 0.0 5.7e-154 512.8 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Methyltransf_11 PF08241.7 gi|20090769|ref|NP_616844.1| - 2.9e-22 78.9 0.0 4.5e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090769|ref|NP_616844.1| - 2e-19 69.6 0.1 2.8e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090769|ref|NP_616844.1| - 2.2e-12 47.2 0.0 3.5e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090769|ref|NP_616844.1| - 6.3e-11 42.6 0.0 1e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090769|ref|NP_616844.1| - 2.1e-10 40.5 0.0 3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090769|ref|NP_616844.1| - 1.9e-09 38.0 0.1 1.1e-08 35.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090769|ref|NP_616844.1| - 2.1e-08 33.5 0.0 3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|20090769|ref|NP_616844.1| - 2e-06 27.2 0.0 3.1e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|20090769|ref|NP_616844.1| - 4.8e-05 23.3 0.0 0.00013 21.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.11 gi|20090769|ref|NP_616844.1| - 0.0012 17.8 0.2 0.0023 16.8 0.1 1.4 1 1 0 1 1 1 1 mRNA capping enzyme Thymidylate_kin PF02223.12 gi|20090769|ref|NP_616844.1| - 0.02 14.2 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase FtsJ PF01728.14 gi|20090769|ref|NP_616844.1| - 0.065 13.2 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase MTS PF05175.9 gi|20090769|ref|NP_616844.1| - 0.091 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PRiA4_ORF3 PF07929.6 gi|20090770|ref|NP_616845.1| - 5.8e-70 234.3 0.1 6.5e-70 234.1 0.1 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein MIase PF02426.11 gi|20090770|ref|NP_616845.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Muconolactone delta-isomerase SEC-C PF02810.10 gi|20090771|ref|NP_616846.1| - 1.2e-10 40.6 12.3 2.3e-10 39.7 8.5 1.4 1 0 0 1 1 1 1 SEC-C motif DUF489 PF04356.7 gi|20090771|ref|NP_616846.1| - 0.13 11.8 0.2 0.37 10.3 0.0 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF489) PRiA4_ORF3 PF07929.6 gi|20090774|ref|NP_616849.1| - 4.6e-69 231.4 0.2 5.2e-69 231.2 0.1 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DUF2227 PF09988.4 gi|20090775|ref|NP_616850.1| - 1.3e-26 93.2 5.0 2.3e-24 85.9 3.4 2.1 1 1 0 1 1 1 1 Uncharacterized metal-binding protein (DUF2227) DUF4181 PF13789.1 gi|20090775|ref|NP_616850.1| - 2.4 8.1 10.4 2 8.3 0.6 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4181) HD PF01966.17 gi|20090778|ref|NP_616853.1| - 2.9e-06 27.3 0.2 4.6e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 HD domain rve PF00665.21 gi|20090779|ref|NP_616854.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20090779|ref|NP_616854.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20090779|ref|NP_616854.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20090779|ref|NP_616854.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20090779|ref|NP_616854.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20090779|ref|NP_616854.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal DUF310 PF03750.8 gi|20090781|ref|NP_616856.1| - 2.6e-11 43.7 0.1 3.6e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF310) RAMPs PF03787.10 gi|20090782|ref|NP_616857.1| - 6.5e-17 62.0 0.1 9.1e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|20090783|ref|NP_616858.1| - 7.6e-06 25.9 4.6 1.5e-05 24.9 3.2 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|20090784|ref|NP_616859.1| - 2.6e-26 92.7 0.4 2.6e-26 92.7 0.3 1.4 2 0 0 2 2 2 1 RAMP superfamily DUF1660 PF07874.6 gi|20090784|ref|NP_616859.1| - 0.9 9.8 3.9 3.6 7.9 1.4 2.4 2 0 0 2 2 2 0 Prophage protein (DUF1660) TPR_12 PF13424.1 gi|20090785|ref|NP_616860.1| - 5.9e-13 48.5 10.2 2.1e-10 40.3 2.2 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090785|ref|NP_616860.1| - 3.2e-09 36.4 1.8 0.0011 18.8 0.1 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090785|ref|NP_616860.1| - 1.2e-08 34.1 5.4 0.0019 17.7 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090785|ref|NP_616860.1| - 1.5e-08 35.1 1.7 0.0011 19.6 0.2 4.5 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090785|ref|NP_616860.1| - 1.7e-06 27.3 6.2 0.023 14.4 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090785|ref|NP_616860.1| - 2e-06 27.1 16.9 0.0059 16.2 0.1 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090785|ref|NP_616860.1| - 2.1e-06 27.1 12.1 0.0046 16.7 0.2 4.4 5 0 0 5 5 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090785|ref|NP_616860.1| - 3.2e-06 27.2 0.3 2.7 8.8 0.0 4.8 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090785|ref|NP_616860.1| - 3.6e-06 26.5 12.2 1.5e-05 24.5 1.6 4.2 4 1 1 5 5 5 2 TPR repeat TPR_17 PF13431.1 gi|20090785|ref|NP_616860.1| - 1.3e-05 25.0 2.9 0.079 13.2 0.1 3.4 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090785|ref|NP_616860.1| - 8.5e-05 22.8 6.4 0.04 14.2 0.2 5.1 3 1 2 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090785|ref|NP_616860.1| - 0.00033 20.9 7.9 4.9 7.8 0.1 5.8 6 1 0 6 6 4 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|20090785|ref|NP_616860.1| - 0.026 14.4 0.2 0.026 14.4 0.2 3.9 4 0 0 4 4 3 0 Fis1 C-terminal tetratricopeptide repeat CN_hydrolase PF00795.17 gi|20090785|ref|NP_616860.1| - 0.029 13.7 0.0 0.6 9.4 0.0 2.3 1 1 0 1 1 1 0 Carbon-nitrogen hydrolase TPR_21 PF09976.4 gi|20090785|ref|NP_616860.1| - 0.19 11.6 4.7 2.4 8.0 0.1 3.7 4 1 0 5 5 5 0 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20090785|ref|NP_616860.1| - 0.22 12.0 0.0 31 5.3 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat CN_hydrolase PF00795.17 gi|20090786|ref|NP_616861.1| - 0.0017 17.7 0.0 0.25 10.6 0.0 2.3 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase AAA_14 PF13173.1 gi|20090790|ref|NP_616865.1| - 4.3e-27 94.5 0.1 8.1e-27 93.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|20090790|ref|NP_616865.1| - 5.1e-11 42.5 0.0 1.5e-10 41.1 0.0 1.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|20090790|ref|NP_616865.1| - 0.0002 21.1 0.1 0.00089 19.0 0.0 2.0 2 1 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|20090790|ref|NP_616865.1| - 0.00077 19.6 0.0 0.054 13.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|20090790|ref|NP_616865.1| - 0.009 16.1 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_16 PF13191.1 gi|20090790|ref|NP_616865.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|20090790|ref|NP_616865.1| - 0.014 15.5 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.1 gi|20090790|ref|NP_616865.1| - 0.022 13.4 0.0 0.056 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|20090790|ref|NP_616865.1| - 0.037 14.3 0.0 0.13 12.5 0.0 2.0 2 1 0 2 2 2 0 ABC transporter NACHT PF05729.7 gi|20090790|ref|NP_616865.1| - 0.062 12.9 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF373 PF04123.8 gi|20090791|ref|NP_616866.1| - 0.13 11.2 0.2 0.17 10.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) TPR_11 PF13414.1 gi|20090792|ref|NP_616867.1| - 1.7e-49 165.2 12.5 9e-15 54.0 0.1 5.2 4 1 1 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|20090792|ref|NP_616867.1| - 3.7e-49 162.4 16.4 6.8e-08 31.7 0.0 8.2 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090792|ref|NP_616867.1| - 3.3e-41 135.8 19.3 2.5e-06 26.9 0.2 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090792|ref|NP_616867.1| - 5.2e-38 126.0 9.5 7.8e-05 22.5 0.0 8.3 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090792|ref|NP_616867.1| - 1.7e-33 114.5 10.7 2.8e-09 37.3 0.2 5.2 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090792|ref|NP_616867.1| - 1.2e-32 111.7 12.9 2.8e-09 36.7 0.0 5.2 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090792|ref|NP_616867.1| - 3.8e-30 101.6 14.4 0.00018 21.8 0.2 8.2 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090792|ref|NP_616867.1| - 2.2e-28 95.8 8.5 0.00011 21.7 0.0 7.7 7 1 1 8 8 8 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090792|ref|NP_616867.1| - 8.9e-24 83.6 15.0 3.5e-08 33.6 0.5 5.3 3 2 1 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20090792|ref|NP_616867.1| - 3.2e-23 81.3 6.5 2.6e-06 27.1 0.1 4.5 2 1 3 5 5 4 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090792|ref|NP_616867.1| - 3e-19 68.9 0.8 2.1e-07 31.0 0.0 3.3 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|20090792|ref|NP_616867.1| - 6.7e-11 41.9 8.8 0.061 13.2 0.0 6.7 5 2 2 7 7 7 3 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|20090792|ref|NP_616867.1| - 2.9e-10 39.1 7.6 1 9.3 0.0 7.1 6 2 2 8 8 7 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090792|ref|NP_616867.1| - 1.9e-09 37.3 3.1 5.3 7.7 0.1 7.6 8 0 0 8 8 8 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|20090792|ref|NP_616867.1| - 1.8e-08 33.6 7.5 0.2 10.3 0.0 5.3 1 1 3 5 5 5 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|20090792|ref|NP_616867.1| - 5.7e-08 32.1 5.9 5.7e-05 22.3 0.7 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090792|ref|NP_616867.1| - 3.6e-07 29.8 3.6 3.5 7.7 0.0 6.4 6 1 1 7 7 7 1 Tetratricopeptide repeat BTAD PF03704.12 gi|20090792|ref|NP_616867.1| - 1.4e-06 28.6 1.0 0.06 13.6 0.4 4.0 3 1 0 3 3 3 2 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|20090792|ref|NP_616867.1| - 0.0022 18.0 1.5 14 5.8 0.0 4.2 2 2 1 4 4 4 0 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|20090792|ref|NP_616867.1| - 0.0027 17.4 0.0 13 5.6 0.0 3.6 2 1 1 3 3 3 0 Rapsyn N-terminal myristoylation and linker region ChAPs PF09295.5 gi|20090792|ref|NP_616867.1| - 0.0088 14.8 0.2 0.85 8.3 0.0 2.4 1 1 2 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) TPR_4 PF07721.9 gi|20090792|ref|NP_616867.1| - 0.0088 16.3 0.4 34 5.2 0.1 4.9 5 0 0 5 5 4 0 Tetratricopeptide repeat PPR PF01535.15 gi|20090792|ref|NP_616867.1| - 0.051 13.5 2.1 22 5.3 0.0 4.9 6 0 0 6 6 4 0 PPR repeat Alkyl_sulf_dimr PF14863.1 gi|20090792|ref|NP_616867.1| - 0.069 13.3 0.1 2.3 8.4 0.0 2.6 2 1 0 2 2 2 0 Alkyl sulfatase dimerisation Coatomer_E PF04733.9 gi|20090792|ref|NP_616867.1| - 0.16 11.1 0.1 9.8 5.2 0.0 2.3 1 1 1 2 2 2 0 Coatomer epsilon subunit MIT PF04212.13 gi|20090792|ref|NP_616867.1| - 5.8 6.8 9.6 19 5.2 0.3 5.3 6 1 0 6 6 6 0 MIT (microtubule interacting and transport) domain DUF389 PF04087.9 gi|20090793|ref|NP_616868.1| - 1.9e-37 128.3 16.3 1.9e-37 128.3 11.3 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF389) DUF2919 PF11143.3 gi|20090793|ref|NP_616868.1| - 0.078 12.8 2.6 0.13 12.0 1.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) Methyltransf_31 PF13847.1 gi|20090794|ref|NP_616869.1| - 5.6e-16 58.4 0.0 8.7e-16 57.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090794|ref|NP_616869.1| - 3.2e-15 56.2 0.0 1.9e-14 53.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090794|ref|NP_616869.1| - 8.8e-14 52.0 0.0 2e-13 50.8 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090794|ref|NP_616869.1| - 2e-13 50.6 0.0 3.1e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090794|ref|NP_616869.1| - 3.1e-13 49.9 0.0 5.7e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090794|ref|NP_616869.1| - 4.9e-09 36.5 0.0 8.2e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090794|ref|NP_616869.1| - 2.4e-08 33.9 0.0 4.1e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20090794|ref|NP_616869.1| - 5.6e-08 32.1 0.0 7.2e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|20090794|ref|NP_616869.1| - 8.1e-08 31.8 0.0 1.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|20090794|ref|NP_616869.1| - 1.2e-07 31.1 0.0 1.9e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|20090794|ref|NP_616869.1| - 9.8e-07 28.3 0.0 1.4e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.13 gi|20090794|ref|NP_616869.1| - 0.00012 21.2 0.0 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|20090794|ref|NP_616869.1| - 0.00086 18.4 0.0 0.0011 18.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|20090794|ref|NP_616869.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|20090794|ref|NP_616869.1| - 0.0021 17.5 0.0 0.0049 16.3 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) FmrO PF07091.6 gi|20090794|ref|NP_616869.1| - 0.0025 16.8 0.0 0.0034 16.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.8 gi|20090794|ref|NP_616869.1| - 0.0027 16.8 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|20090794|ref|NP_616869.1| - 0.0034 16.9 0.0 0.0046 16.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase AdoMet_MTase PF07757.8 gi|20090794|ref|NP_616869.1| - 0.0074 16.3 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase FtsJ PF01728.14 gi|20090794|ref|NP_616869.1| - 0.0074 16.2 0.0 0.0093 15.9 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase MetW PF07021.7 gi|20090794|ref|NP_616869.1| - 0.011 15.0 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|20090794|ref|NP_616869.1| - 0.031 12.9 0.0 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|20090794|ref|NP_616869.1| - 0.052 13.0 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ACP_syn_III_C PF08541.5 gi|20090794|ref|NP_616869.1| - 0.069 13.1 0.0 3.9 7.5 0.0 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Lactamase_B_2 PF12706.2 gi|20090795|ref|NP_616870.1| - 4.4e-08 32.8 0.1 1.2e-07 31.5 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20090795|ref|NP_616870.1| - 1.8e-06 27.7 1.5 7.9e-06 25.6 1.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2284 PF10050.4 gi|20090796|ref|NP_616871.1| - 6.9e-54 181.9 0.2 8.1e-54 181.6 0.2 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF2854 PF11016.3 gi|20090796|ref|NP_616871.1| - 0.018 14.5 0.0 0.034 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2854) Baculo_ME53 PF06061.6 gi|20090796|ref|NP_616871.1| - 0.13 11.2 0.4 1.2 8.0 0.0 2.0 2 0 0 2 2 2 0 Baculoviridae ME53 Pyridoxal_deC PF00282.14 gi|20090797|ref|NP_616872.1| - 4.3e-66 222.8 0.0 5.2e-66 222.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|20090797|ref|NP_616872.1| - 2.5e-07 29.7 0.0 3.7e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_5 PF00266.14 gi|20090798|ref|NP_616873.1| - 4.2e-41 140.9 0.0 9e-41 139.8 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V ATE_N PF04376.8 gi|20090798|ref|NP_616873.1| - 0.12 12.2 0.3 0.22 11.3 0.2 1.4 1 0 0 1 1 1 0 Arginine-tRNA-protein transferase, N terminus FGE-sulfatase PF03781.11 gi|20090799|ref|NP_616874.1| - 5e-50 170.2 2.5 6.5e-49 166.6 1.7 2.0 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF1724 PF08350.5 gi|20090801|ref|NP_616876.1| - 6.1e-23 80.1 0.0 1.9e-22 78.5 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|20090801|ref|NP_616876.1| - 0.0012 18.5 0.5 0.003 17.2 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|20090801|ref|NP_616876.1| - 0.008 15.7 0.4 0.015 14.9 0.3 1.4 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|20090801|ref|NP_616876.1| - 0.024 14.4 0.3 0.049 13.4 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.4 gi|20090801|ref|NP_616876.1| - 0.026 14.6 0.1 0.051 13.6 0.1 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_20 PF12840.2 gi|20090801|ref|NP_616876.1| - 0.036 13.8 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Herpes_TAF50 PF03326.8 gi|20090801|ref|NP_616876.1| - 0.049 12.5 0.0 0.07 12.0 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus transcription activation factor (transactivator) HTH_5 PF01022.15 gi|20090801|ref|NP_616876.1| - 0.055 13.1 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF429 PF04250.8 gi|20090802|ref|NP_616877.1| - 2.8e-60 203.1 0.0 3.2e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) CTC1_2 PF15491.1 gi|20090802|ref|NP_616877.1| - 0.14 11.1 0.2 0.55 9.1 0.1 1.8 1 1 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 B5 PF03484.10 gi|20090804|ref|NP_616879.1| - 1.2e-18 66.7 0.1 8.2e-18 64.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|20090804|ref|NP_616879.1| - 1.9e-14 53.5 0.0 3.9e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|20090804|ref|NP_616879.1| - 5e-07 29.1 0.2 1.8e-06 27.3 0.1 2.0 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) HATPase_c PF02518.21 gi|20090805|ref|NP_616880.1| - 3.8e-29 100.6 0.0 7.7e-29 99.6 0.0 1.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20090805|ref|NP_616880.1| - 1.4e-20 73.0 0.0 3e-20 71.9 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20090805|ref|NP_616880.1| - 9.6e-18 64.2 0.0 1.4e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|20090805|ref|NP_616880.1| - 6.1e-12 45.8 0.0 1.1e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|20090805|ref|NP_616880.1| - 2.1e-11 43.5 0.0 3.8e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|20090805|ref|NP_616880.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|20090805|ref|NP_616880.1| - 0.0025 17.4 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|20090805|ref|NP_616880.1| - 0.014 15.2 0.0 0.037 13.8 0.0 1.7 1 0 0 1 1 1 0 PAS domain HATPase_c_2 PF13581.1 gi|20090805|ref|NP_616880.1| - 0.12 12.1 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain TPP_enzyme_N PF02776.13 gi|20090806|ref|NP_616881.1| - 1.1e-53 181.2 0.0 9.4e-53 178.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|20090806|ref|NP_616881.1| - 2.6e-42 143.9 0.0 5.4e-42 142.9 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|20090806|ref|NP_616881.1| - 9.4e-37 125.8 0.0 2.5e-36 124.4 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Glyco_trans_4_4 PF13579.1 gi|20090806|ref|NP_616881.1| - 0.021 14.9 0.0 10 6.2 0.0 2.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain RNase_HII PF01351.13 gi|20090807|ref|NP_616882.1| - 1.9e-48 164.7 0.4 2.2e-48 164.5 0.3 1.0 1 0 0 1 1 1 1 Ribonuclease HII YqgF PF14639.1 gi|20090807|ref|NP_616882.1| - 0.073 12.6 0.2 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 DUF4239 PF14023.1 gi|20090807|ref|NP_616882.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) EphA2_TM PF14575.1 gi|20090808|ref|NP_616883.1| - 1.1 9.6 3.0 1.5 9.2 2.1 1.2 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain Transp_Tc5_C PF04236.10 gi|20090808|ref|NP_616883.1| - 2 8.7 6.1 44 4.3 2.9 2.9 1 1 1 2 2 2 0 Tc5 transposase C-terminal domain NosD PF05048.8 gi|20090809|ref|NP_616884.1| - 5.7e-56 189.3 48.1 2.5e-52 177.4 24.5 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20090809|ref|NP_616884.1| - 2.5e-17 63.0 19.9 2.5e-17 63.0 13.8 3.2 1 1 1 3 3 3 1 Right handed beta helix region Pectinesterase PF01095.14 gi|20090809|ref|NP_616884.1| - 0.00048 18.7 0.3 0.00096 17.8 0.2 1.5 1 0 0 1 1 1 1 Pectinesterase Lactamase_B PF00753.22 gi|20090810|ref|NP_616885.1| - 6e-16 58.6 0.1 1.6e-15 57.2 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|20090810|ref|NP_616885.1| - 0.0001 21.9 0.0 0.00013 21.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|20090810|ref|NP_616885.1| - 0.003 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GATase_5 PF13507.1 gi|20090811|ref|NP_616886.1| - 3.1e-48 163.9 0.0 3.5e-48 163.7 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|20090811|ref|NP_616886.1| - 1.9e-09 37.1 0.1 3.3e-09 36.3 0.1 1.6 1 1 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|20090811|ref|NP_616886.1| - 3.3e-09 36.4 0.0 4.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|20090811|ref|NP_616886.1| - 3.1e-07 30.1 0.0 5.3e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|20090811|ref|NP_616886.1| - 2.4e-06 26.9 0.0 3.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|20090811|ref|NP_616886.1| - 3.8e-05 23.3 0.0 0.00018 21.2 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|20090811|ref|NP_616886.1| - 0.00057 19.3 0.0 0.001 18.5 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 PurS PF02700.9 gi|20090812|ref|NP_616887.1| - 1.2e-28 98.8 0.4 1.4e-28 98.6 0.3 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1827 PF08860.5 gi|20090812|ref|NP_616887.1| - 0.094 12.8 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) Asn_synthase PF00733.16 gi|20090814|ref|NP_616889.1| - 6.2e-60 202.8 0.0 8.8e-60 202.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|20090814|ref|NP_616889.1| - 5.7e-19 68.0 0.0 1.5e-18 66.7 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|20090814|ref|NP_616889.1| - 6.1e-11 42.4 0.0 3.3e-10 40.0 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.12 gi|20090814|ref|NP_616889.1| - 0.0018 17.2 0.0 0.0028 16.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase GATase_2 PF00310.16 gi|20090814|ref|NP_616889.1| - 0.0039 15.9 0.0 3 6.4 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II ATP_bind_3 PF01171.15 gi|20090814|ref|NP_616889.1| - 0.062 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 PP-loop family CbiA PF01656.18 gi|20090815|ref|NP_616890.1| - 3.4e-32 111.4 0.0 4.7e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20090815|ref|NP_616890.1| - 3.5e-11 42.7 0.0 5.6e-10 38.7 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|20090815|ref|NP_616890.1| - 1e-07 31.4 0.7 0.00013 21.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|20090815|ref|NP_616890.1| - 6.1e-07 29.5 0.0 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|20090815|ref|NP_616890.1| - 7.5e-05 22.4 0.2 0.00059 19.5 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|20090815|ref|NP_616890.1| - 7.8e-05 23.4 0.2 0.00025 21.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|20090815|ref|NP_616890.1| - 0.00037 20.7 0.0 0.00073 19.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|20090815|ref|NP_616890.1| - 0.00039 20.0 1.0 0.021 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|20090815|ref|NP_616890.1| - 0.00043 19.7 0.0 0.0069 15.7 0.1 2.0 2 0 0 2 2 2 1 YhjQ protein AAA_16 PF13191.1 gi|20090815|ref|NP_616890.1| - 0.00062 19.8 0.0 0.0017 18.3 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain AAA_24 PF13479.1 gi|20090815|ref|NP_616890.1| - 0.00091 18.8 0.1 0.0068 16.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|20090815|ref|NP_616890.1| - 0.0013 18.4 1.1 0.0021 17.7 0.1 1.8 2 0 0 2 2 2 1 NTPase SRP54 PF00448.17 gi|20090815|ref|NP_616890.1| - 0.0027 17.1 0.1 0.0048 16.3 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|20090815|ref|NP_616890.1| - 0.0037 16.0 1.1 0.0077 15.0 0.1 1.9 2 0 0 2 2 2 1 ArgK protein AAA_10 PF12846.2 gi|20090815|ref|NP_616890.1| - 0.0051 16.3 0.0 0.012 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain DUF87 PF01935.12 gi|20090815|ref|NP_616890.1| - 0.0071 16.1 0.2 0.031 14.1 0.0 2.1 2 1 1 3 3 3 1 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|20090815|ref|NP_616890.1| - 0.0095 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|20090815|ref|NP_616890.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.6 gi|20090815|ref|NP_616890.1| - 0.025 13.6 0.1 0.078 12.0 0.1 1.8 1 0 0 1 1 1 0 ATPase MipZ AAA_30 PF13604.1 gi|20090815|ref|NP_616890.1| - 0.033 13.7 0.0 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|20090815|ref|NP_616890.1| - 0.037 13.4 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|20090815|ref|NP_616890.1| - 0.04 13.5 0.2 0.086 12.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|20090815|ref|NP_616890.1| - 0.045 14.0 0.6 0.086 13.1 0.2 1.9 1 1 1 2 2 2 0 ABC transporter CTP_synth_N PF06418.9 gi|20090815|ref|NP_616890.1| - 0.052 12.6 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 CTP synthase N-terminus AAA_5 PF07728.9 gi|20090815|ref|NP_616890.1| - 0.058 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|20090815|ref|NP_616890.1| - 0.096 12.8 0.0 0.41 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|20090815|ref|NP_616890.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|20090815|ref|NP_616890.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|20090815|ref|NP_616890.1| - 0.17 11.3 1.6 4.2 6.7 0.0 2.5 3 0 0 3 3 2 0 Elongation factor Tu GTP binding domain 3HCDH_N PF02737.13 gi|20090815|ref|NP_616890.1| - 0.17 11.4 1.5 3.3 7.3 0.0 2.4 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPR_1 PF00515.23 gi|20090816|ref|NP_616891.1| - 7.5e-34 113.9 3.8 1.1e-09 37.4 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090816|ref|NP_616891.1| - 6.7e-27 91.2 4.3 5.5e-08 32.1 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090816|ref|NP_616891.1| - 4.7e-26 90.2 2.1 3.1e-14 52.3 0.0 2.2 2 0 0 2 2 2 2 TPR repeat TPR_17 PF13431.1 gi|20090816|ref|NP_616891.1| - 3.6e-23 79.7 0.5 1.5e-06 27.9 0.0 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090816|ref|NP_616891.1| - 1.4e-22 77.7 1.8 5.1e-07 29.0 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090816|ref|NP_616891.1| - 9.7e-18 63.0 0.7 0.00013 22.3 0.0 4.2 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20090816|ref|NP_616891.1| - 4.5e-17 61.6 0.5 9.3e-11 41.4 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090816|ref|NP_616891.1| - 2.5e-16 59.8 0.2 1.7e-09 38.0 0.0 2.6 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090816|ref|NP_616891.1| - 3.3e-16 58.9 0.9 4.1e-08 33.0 0.0 3.0 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090816|ref|NP_616891.1| - 3.9e-14 51.2 1.3 0.0051 16.5 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090816|ref|NP_616891.1| - 2.6e-12 46.9 1.0 0.00021 21.5 0.0 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090816|ref|NP_616891.1| - 7.9e-11 41.6 0.3 0.23 11.9 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090816|ref|NP_616891.1| - 3.1e-10 40.0 0.3 2.8e-07 30.5 0.3 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|20090816|ref|NP_616891.1| - 1.2e-09 37.4 0.1 0.00071 18.4 0.0 2.3 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|20090816|ref|NP_616891.1| - 2.7e-08 33.5 4.7 0.0053 16.6 0.0 4.3 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|20090816|ref|NP_616891.1| - 9.9e-06 25.3 1.6 1.7 8.6 0.0 4.0 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|20090816|ref|NP_616891.1| - 1.2e-05 25.0 0.7 0.98 9.4 0.1 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20090816|ref|NP_616891.1| - 5.6e-05 22.3 0.0 0.05 12.6 0.0 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20090816|ref|NP_616891.1| - 0.0005 19.9 0.1 1 9.1 0.0 2.8 1 1 1 2 2 2 2 Domain of Unknown Function (DUF3856) TPR_5 PF12688.2 gi|20090816|ref|NP_616891.1| - 0.014 15.4 0.0 1.1 9.2 0.0 2.3 1 1 1 2 2 2 0 Tetratrico peptide repeat PPR PF01535.15 gi|20090816|ref|NP_616891.1| - 0.023 14.6 2.2 19 5.5 0.0 4.2 4 0 0 4 4 4 0 PPR repeat DDT PF02791.12 gi|20090816|ref|NP_616891.1| - 0.13 12.0 0.0 0.78 9.5 0.0 2.2 2 0 0 2 2 2 0 DDT domain RPN7 PF10602.4 gi|20090816|ref|NP_616891.1| - 0.13 11.5 0.2 13 5.1 0.0 2.9 3 0 0 3 3 3 0 26S proteasome subunit RPN7 Peptidase_S13 PF02113.10 gi|20090817|ref|NP_616892.1| - 1.5e-70 237.8 0.3 2.1e-70 237.4 0.2 1.1 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Peptidase_S11 PF00768.15 gi|20090817|ref|NP_616892.1| - 0.028 13.7 0.0 0.053 12.7 0.0 1.4 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase TPR_1 PF00515.23 gi|20090818|ref|NP_616893.1| - 1.8e-48 160.2 1.6 1.2e-08 34.1 0.0 6.6 7 0 0 7 7 6 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090818|ref|NP_616893.1| - 3.7e-42 141.8 6.5 7.7e-14 51.0 0.4 3.4 3 0 0 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|20090818|ref|NP_616893.1| - 4.1e-40 132.4 11.6 2.4e-06 27.0 0.0 6.8 7 0 0 7 7 6 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090818|ref|NP_616893.1| - 5.3e-35 119.3 17.0 4e-12 46.4 0.3 3.8 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090818|ref|NP_616893.1| - 6.3e-33 110.2 0.6 0.00042 20.3 0.0 7.3 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090818|ref|NP_616893.1| - 1.9e-27 92.9 2.3 0.00089 18.8 0.0 7.2 5 2 2 7 7 7 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20090818|ref|NP_616893.1| - 4.2e-27 93.8 10.8 1.3e-09 37.8 0.1 4.8 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090818|ref|NP_616893.1| - 1.4e-23 83.0 13.3 4.7e-07 30.0 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090818|ref|NP_616893.1| - 2.4e-23 80.5 20.9 3.5e-05 24.0 0.1 7.2 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20090818|ref|NP_616893.1| - 7.7e-23 80.1 28.2 1.3e-08 34.5 0.3 4.6 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090818|ref|NP_616893.1| - 2.7e-15 54.8 10.5 0.0025 17.4 0.0 6.2 4 2 2 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090818|ref|NP_616893.1| - 5.5e-14 51.5 6.3 0.11 12.9 0.0 5.8 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090818|ref|NP_616893.1| - 1.4e-12 47.1 21.9 0.04 13.8 0.5 6.6 6 1 0 6 6 6 5 Tetratricopeptide repeat NARP1 PF12569.3 gi|20090818|ref|NP_616893.1| - 4.2e-09 35.7 1.2 0.056 12.2 0.0 3.6 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|20090818|ref|NP_616893.1| - 3.4e-08 33.2 4.4 0.45 10.4 0.0 5.7 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|20090818|ref|NP_616893.1| - 7.7e-08 32.7 10.0 4.2e-05 23.8 0.3 2.8 2 1 0 2 2 2 2 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|20090818|ref|NP_616893.1| - 6.8e-07 28.6 8.1 0.0047 16.0 0.1 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090818|ref|NP_616893.1| - 2.1e-06 27.7 6.2 0.0019 18.3 0.0 3.8 2 1 2 4 4 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.1 gi|20090818|ref|NP_616893.1| - 2.8e-06 27.3 6.2 0.002 18.2 0.1 4.9 3 2 2 5 5 5 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20090818|ref|NP_616893.1| - 6.4e-06 26.0 16.4 0.1 13.0 0.0 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|20090818|ref|NP_616893.1| - 1.3e-05 24.5 0.2 0.046 12.9 0.0 3.1 1 1 2 3 3 3 2 Coatomer epsilon subunit TPR_21 PF09976.4 gi|20090818|ref|NP_616893.1| - 0.00015 21.7 4.2 0.49 10.3 0.1 3.7 3 1 1 4 4 4 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20090818|ref|NP_616893.1| - 0.00038 20.2 5.1 6.2 6.6 0.2 5.2 2 2 0 3 3 3 0 Domain of Unknown Function (DUF3856) PPTA PF01239.17 gi|20090818|ref|NP_616893.1| - 0.00044 19.4 0.0 1.5 8.2 0.0 3.2 4 0 0 4 4 3 2 Protein prenyltransferase alpha subunit repeat ChAPs PF09295.5 gi|20090818|ref|NP_616893.1| - 0.00082 18.2 0.3 0.0033 16.2 0.0 1.9 2 0 0 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) PPR PF01535.15 gi|20090818|ref|NP_616893.1| - 0.0016 18.2 4.0 3.7 7.7 0.0 5.0 5 0 0 5 5 4 1 PPR repeat FAT PF02259.18 gi|20090818|ref|NP_616893.1| - 0.012 14.6 0.3 3.3 6.5 0.0 3.4 1 1 2 3 3 3 0 FAT domain MIT PF04212.13 gi|20090818|ref|NP_616893.1| - 0.038 13.8 9.3 13 5.7 0.1 5.4 6 0 0 6 6 5 0 MIT (microtubule interacting and transport) domain RPN7 PF10602.4 gi|20090818|ref|NP_616893.1| - 0.044 13.1 0.7 12 5.1 0.0 3.4 2 1 1 3 3 3 0 26S proteasome subunit RPN7 DUF2605 PF10792.4 gi|20090818|ref|NP_616893.1| - 0.074 12.7 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) CSTF2_hinge PF14327.1 gi|20090818|ref|NP_616893.1| - 0.13 12.3 0.1 0.49 10.5 0.1 1.9 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 PASTA PF03793.14 gi|20090819|ref|NP_616894.1| - 4.9e-12 45.3 0.4 2.4e-11 43.1 0.1 2.1 1 1 1 2 2 2 1 PASTA domain MscS_porin PF12795.2 gi|20090819|ref|NP_616894.1| - 0.023 14.0 2.5 0.03 13.6 1.7 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain IFT57 PF10498.4 gi|20090819|ref|NP_616894.1| - 0.025 13.3 2.5 0.034 12.9 1.8 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF3847 PF12958.2 gi|20090819|ref|NP_616894.1| - 0.079 12.7 4.7 0.13 12.0 2.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3847) UPF0147 PF03685.8 gi|20090819|ref|NP_616894.1| - 0.1 12.4 0.2 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0147) Nup54 PF13874.1 gi|20090819|ref|NP_616894.1| - 0.1 12.2 1.5 0.15 11.6 1.1 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 IncA PF04156.9 gi|20090819|ref|NP_616894.1| - 0.16 11.5 6.4 0.25 10.9 4.4 1.4 1 0 0 1 1 1 0 IncA protein gerPA PF10676.4 gi|20090819|ref|NP_616894.1| - 0.18 11.6 0.4 0.31 10.9 0.3 1.4 1 0 0 1 1 1 0 Spore germination protein gerPA/gerPF Cortex-I_coil PF09304.5 gi|20090819|ref|NP_616894.1| - 0.42 10.6 6.8 0.18 11.8 1.8 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil Tropomyosin PF00261.15 gi|20090819|ref|NP_616894.1| - 0.49 9.4 8.2 0.6 9.1 5.7 1.2 1 0 0 1 1 1 0 Tropomyosin DUF2730 PF10805.3 gi|20090819|ref|NP_616894.1| - 5.7 6.7 7.6 1.7 8.4 2.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) XhlA PF10779.4 gi|20090819|ref|NP_616894.1| - 7.7 6.5 6.5 49 3.9 4.5 2.1 1 1 0 1 1 1 0 Haemolysin XhlA DUF169 PF02596.10 gi|20090820|ref|NP_616895.1| - 4e-72 242.1 0.4 4.5e-72 241.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 TctA PF01970.11 gi|20090821|ref|NP_616896.1| - 5.4e-95 318.2 32.8 6.5e-95 318.0 22.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ATP_bind_3 PF01171.15 gi|20090822|ref|NP_616897.1| - 5.1e-13 48.9 0.0 8.3e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|20090822|ref|NP_616897.1| - 1.3e-05 25.0 0.0 2.1e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|20090822|ref|NP_616897.1| - 3.1e-05 23.5 0.0 4.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|20090822|ref|NP_616897.1| - 7.5e-05 21.4 0.0 0.00011 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|20090822|ref|NP_616897.1| - 0.00024 20.0 0.1 0.00033 19.6 0.0 1.1 1 0 0 1 1 1 1 NAD synthase ATP_bind_4 PF01902.12 gi|20090822|ref|NP_616897.1| - 0.0017 17.7 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|20090822|ref|NP_616897.1| - 0.0027 17.0 0.0 0.014 14.6 0.0 2.4 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|20090822|ref|NP_616897.1| - 0.0067 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) RecR PF02132.10 gi|20090822|ref|NP_616897.1| - 0.01 15.2 1.7 0.01 15.2 1.2 3.1 3 0 0 3 3 3 0 RecR protein Ribosomal_S27e PF01667.12 gi|20090822|ref|NP_616897.1| - 0.018 14.5 0.5 0.018 14.5 0.4 2.4 2 0 0 2 2 2 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|20090822|ref|NP_616897.1| - 0.11 11.9 0.3 0.11 11.9 0.2 3.0 4 0 0 4 4 4 0 A2L zinc ribbon domain TMCO5 PF14992.1 gi|20090823|ref|NP_616898.1| - 0.96 8.5 2.1 7.9 5.5 0.8 2.1 2 0 0 2 2 2 0 TMCO5 family Bac_export_2 PF01312.14 gi|20090823|ref|NP_616898.1| - 1.6 7.5 10.6 0.2 10.5 0.6 2.4 2 1 1 3 3 3 0 FlhB HrpN YscU SpaS Family DUF3852 PF12963.2 gi|20090823|ref|NP_616898.1| - 2.7 8.0 7.4 3.8 7.5 1.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3852) DUF523 PF04463.7 gi|20090824|ref|NP_616899.1| - 1.6e-16 60.3 0.0 2.2e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF523) NTP_transf_3 PF12804.2 gi|20090825|ref|NP_616900.1| - 1.3e-31 109.8 0.0 1.6e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|20090825|ref|NP_616900.1| - 0.00024 20.7 0.0 0.0003 20.3 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MoaE PF02391.12 gi|20090826|ref|NP_616901.1| - 2.5e-27 95.0 0.6 4.3e-27 94.2 0.4 1.3 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|20090826|ref|NP_616901.1| - 6.6e-18 64.7 0.1 1.4e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|20090826|ref|NP_616901.1| - 0.002 18.1 1.7 0.16 11.9 0.3 2.3 2 0 0 2 2 2 2 AAA ATPase domain UPF0128 PF03673.8 gi|20090826|ref|NP_616901.1| - 0.016 14.4 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) Miro PF08477.8 gi|20090826|ref|NP_616901.1| - 0.019 15.4 0.6 0.084 13.3 0.2 2.1 2 0 0 2 2 2 0 Miro-like protein GBP PF02263.14 gi|20090826|ref|NP_616901.1| - 0.032 13.2 0.6 0.049 12.6 0.4 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, N-terminal domain RadC PF04002.10 gi|20090827|ref|NP_616902.1| - 1.8e-46 156.7 0.0 2.8e-46 156.1 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.1 gi|20090827|ref|NP_616902.1| - 0.00096 18.6 0.0 0.0024 17.4 0.0 1.7 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain Toxin-JAB1 PF15659.1 gi|20090827|ref|NP_616902.1| - 0.0038 17.1 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 JAB-like toxin 1 HHH_2 PF12826.2 gi|20090827|ref|NP_616902.1| - 0.0052 16.6 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|20090827|ref|NP_616902.1| - 0.018 14.7 0.0 0.062 13.0 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|20090827|ref|NP_616902.1| - 0.043 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain FMN_red PF03358.10 gi|20090828|ref|NP_616903.1| - 3.9e-31 107.6 0.0 4.9e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20090828|ref|NP_616903.1| - 1.5e-11 44.1 0.0 1.7e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|20090828|ref|NP_616903.1| - 0.052 13.5 0.0 0.22 11.5 0.0 2.0 1 1 1 2 2 2 0 Flavodoxin domain DUF1743 PF08489.6 gi|20090829|ref|NP_616904.1| - 1.3e-24 86.2 0.4 3.4e-22 78.4 0.0 3.1 2 1 1 3 3 3 3 Domain of unknown function (DUF1743) TPP_enzyme_C PF02775.16 gi|20090830|ref|NP_616905.1| - 2.1e-09 37.1 0.0 7.2e-09 35.3 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|20090830|ref|NP_616905.1| - 5.6e-05 22.6 0.1 0.15 11.5 0.0 3.0 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.19 gi|20090830|ref|NP_616905.1| - 0.00073 19.0 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain POR_N PF01855.14 gi|20090830|ref|NP_616905.1| - 0.03 13.8 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DXP_synthase_N PF13292.1 gi|20090830|ref|NP_616905.1| - 0.042 12.7 0.0 0.07 12.0 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Serinc PF03348.10 gi|20090831|ref|NP_616906.1| - 0.009 14.7 0.0 0.0099 14.6 0.0 1.0 1 0 0 1 1 1 1 Serine incorporator (Serinc) Choline_transpo PF04515.7 gi|20090831|ref|NP_616906.1| - 0.04 12.6 0.2 0.048 12.3 0.1 1.0 1 0 0 1 1 1 0 Plasma-membrane choline transporter PAGK PF15284.1 gi|20090832|ref|NP_616907.1| - 0.0053 16.4 0.6 0.038 13.7 0.0 2.2 2 1 0 2 2 2 1 Phage-encoded virulence factor YXWGXW PF12779.2 gi|20090832|ref|NP_616907.1| - 0.8 9.6 7.5 3.5 7.6 0.2 2.4 2 0 0 2 2 2 0 YXWGXW repeat (2 copies) tRNA_anti-like PF12869.2 gi|20090832|ref|NP_616907.1| - 1.4 8.4 4.2 11 5.4 2.9 2.0 1 1 0 1 1 1 0 tRNA_anti-like MarR_2 PF12802.2 gi|20090833|ref|NP_616908.1| - 3.9e-05 23.2 0.0 6.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20090833|ref|NP_616908.1| - 0.0001 21.9 0.1 0.00018 21.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20090833|ref|NP_616908.1| - 0.00038 19.7 0.3 0.00066 19.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|20090833|ref|NP_616908.1| - 0.0016 18.1 0.1 0.0026 17.4 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|20090833|ref|NP_616908.1| - 0.0074 16.5 0.1 0.014 15.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain CarboxypepD_reg PF13620.1 gi|20090833|ref|NP_616908.1| - 0.024 14.6 0.1 0.083 12.9 0.1 2.0 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain TrmB PF01978.14 gi|20090833|ref|NP_616908.1| - 0.024 14.3 0.2 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|20090833|ref|NP_616908.1| - 0.062 13.0 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain phage_tail_N PF08400.5 gi|20090833|ref|NP_616908.1| - 0.08 12.6 0.0 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 Prophage tail fibre N-terminal DDE_Tnp_1_6 PF13751.1 gi|20090834|ref|NP_616909.1| - 5.9e-28 97.3 4.8 1.4e-27 96.1 3.4 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20090834|ref|NP_616909.1| - 3.1e-19 68.6 0.1 8.3e-19 67.2 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|20090834|ref|NP_616909.1| - 9.9e-18 64.4 0.2 1.8e-17 63.6 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain AhpC-TSA PF00578.16 gi|20090834|ref|NP_616909.1| - 0.061 13.0 0.4 0.13 11.9 0.3 1.5 1 0 0 1 1 1 0 AhpC/TSA family Yae1_N PF09811.4 gi|20090836|ref|NP_616911.1| - 0.0026 17.2 4.7 0.057 12.9 1.0 2.2 2 0 0 2 2 2 2 Essential protein Yae1, N terminal DUF4179 PF13786.1 gi|20090836|ref|NP_616911.1| - 0.036 14.2 1.9 0.085 13.0 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) SPC25 PF06703.6 gi|20090836|ref|NP_616911.1| - 0.068 12.7 0.1 0.068 12.7 0.1 1.3 1 1 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Peptidase_C21 PF05381.7 gi|20090836|ref|NP_616911.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Tymovirus endopeptidase CheB_methylest PF01339.12 gi|20090837|ref|NP_616912.1| - 6.1e-63 211.5 0.0 1.1e-62 210.7 0.0 1.4 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.13 gi|20090837|ref|NP_616912.1| - 7.4e-56 188.5 0.0 1.3e-55 187.7 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.1 gi|20090837|ref|NP_616912.1| - 4e-27 94.5 0.3 1.6e-25 89.4 0.1 3.2 3 0 0 3 3 2 1 PAS domain CheR_N PF03705.10 gi|20090837|ref|NP_616912.1| - 1.1e-14 53.5 0.0 3.1e-14 52.0 0.0 1.8 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_9 PF13426.1 gi|20090837|ref|NP_616912.1| - 1.6e-14 54.0 0.3 4.9e-08 33.2 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|20090837|ref|NP_616912.1| - 6.3e-11 42.2 0.0 2.6e-05 24.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|20090837|ref|NP_616912.1| - 1.6e-09 37.4 0.1 2.3e-08 33.7 0.0 3.0 4 0 0 4 4 2 1 PAS fold CENP-F_leu_zip PF10473.4 gi|20090837|ref|NP_616912.1| - 1.8e-05 24.6 20.0 1.8e-05 24.6 13.8 2.4 2 1 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1388 PF07142.7 gi|20090837|ref|NP_616912.1| - 3.1e-05 23.5 17.0 6.8e-05 22.4 11.7 1.6 1 0 0 1 1 1 1 Repeat of unknown function (DUF1388) IncA PF04156.9 gi|20090837|ref|NP_616912.1| - 4.1e-05 23.2 13.0 4.1e-05 23.2 9.0 1.9 2 0 0 2 2 1 1 IncA protein PAS_8 PF13188.1 gi|20090837|ref|NP_616912.1| - 6.4e-05 22.6 0.0 0.0017 18.1 0.0 2.9 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|20090837|ref|NP_616912.1| - 7.2e-05 22.7 0.3 0.065 13.2 0.0 3.1 2 0 0 2 2 2 1 PAS fold IFT57 PF10498.4 gi|20090837|ref|NP_616912.1| - 0.00093 18.0 11.9 0.00093 18.0 8.3 1.8 3 0 0 3 3 1 1 Intra-flagellar transport protein 57 HlyD PF00529.15 gi|20090837|ref|NP_616912.1| - 0.0028 17.0 4.1 0.0046 16.3 2.8 1.3 1 0 0 1 1 1 1 HlyD family secretion protein AAA_13 PF13166.1 gi|20090837|ref|NP_616912.1| - 0.0033 15.9 9.3 0.0033 15.9 6.5 2.0 3 0 0 3 3 2 1 AAA domain Mod_r PF07200.8 gi|20090837|ref|NP_616912.1| - 0.0037 17.1 10.1 0.0037 17.1 7.0 2.3 2 1 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein PAS_3 PF08447.6 gi|20090837|ref|NP_616912.1| - 0.016 15.2 0.0 0.09 12.8 0.0 2.2 2 0 0 2 2 2 0 PAS fold MCPsignal PF00015.16 gi|20090837|ref|NP_616912.1| - 0.029 13.9 8.0 0.089 12.3 5.5 1.8 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Spc7 PF08317.6 gi|20090837|ref|NP_616912.1| - 0.068 11.8 19.7 0.0051 15.5 9.0 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4407 PF14362.1 gi|20090837|ref|NP_616912.1| - 0.12 11.3 8.3 0.25 10.2 5.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.11 gi|20090837|ref|NP_616912.1| - 0.13 11.0 11.0 0.43 9.3 3.8 2.4 1 1 1 2 2 2 0 RmuC family Herpes_U30 PF04523.8 gi|20090837|ref|NP_616912.1| - 0.16 9.3 3.0 0.24 8.8 2.1 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 Atg14 PF10186.4 gi|20090837|ref|NP_616912.1| - 0.19 10.6 10.8 0.4 9.5 7.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF479 PF04336.7 gi|20090837|ref|NP_616912.1| - 0.25 11.4 5.1 1.5 9.0 0.1 3.1 2 1 0 2 2 2 0 Protein of unknown function, DUF479 Laminin_II PF06009.7 gi|20090837|ref|NP_616912.1| - 0.25 11.1 13.6 0.36 10.5 5.4 2.6 1 1 1 2 2 2 0 Laminin Domain II UPF0449 PF15136.1 gi|20090837|ref|NP_616912.1| - 0.25 11.5 13.3 1.3 9.3 0.9 4.0 2 1 1 3 3 2 0 Uncharacterised protein family UPF0449 DUF1664 PF07889.7 gi|20090837|ref|NP_616912.1| - 0.26 11.1 5.3 0.84 9.4 3.7 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DASH_Duo1 PF08651.5 gi|20090837|ref|NP_616912.1| - 0.27 10.8 10.3 0.28 10.7 2.5 2.8 1 1 1 2 2 2 0 DASH complex subunit Duo1 DUF342 PF03961.8 gi|20090837|ref|NP_616912.1| - 0.29 9.4 10.1 0.67 8.2 7.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF342) CorA PF01544.13 gi|20090837|ref|NP_616912.1| - 0.3 10.0 6.0 0.76 8.7 4.2 1.7 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HemX PF04375.9 gi|20090837|ref|NP_616912.1| - 0.31 9.5 8.0 0.57 8.7 5.5 1.3 1 0 0 1 1 1 0 HemX FUSC PF04632.7 gi|20090837|ref|NP_616912.1| - 0.54 8.6 0.7 0.82 8.0 0.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family ATG16 PF08614.6 gi|20090837|ref|NP_616912.1| - 0.62 9.8 22.1 0.076 12.8 11.0 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) NPV_P10 PF05531.7 gi|20090837|ref|NP_616912.1| - 0.9 9.8 8.8 90 3.4 5.7 3.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Fusion_gly PF00523.13 gi|20090837|ref|NP_616912.1| - 1.3 7.0 4.7 2.7 5.9 2.1 2.0 1 1 1 2 2 2 0 Fusion glycoprotein F0 Peptidase_C6 PF00851.13 gi|20090837|ref|NP_616912.1| - 1.5 7.3 7.2 3.1 6.3 5.0 1.4 1 0 0 1 1 1 0 Helper component proteinase MCC-bdg_PDZ PF10506.4 gi|20090837|ref|NP_616912.1| - 1.9 8.4 14.0 3.9 7.3 1.9 2.8 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Seryl_tRNA_N PF02403.17 gi|20090837|ref|NP_616912.1| - 1.9 8.5 23.8 0.32 11.0 2.3 3.9 3 1 1 4 4 3 0 Seryl-tRNA synthetase N-terminal domain TMPIT PF07851.8 gi|20090837|ref|NP_616912.1| - 2.2 7.2 5.4 4.7 6.1 3.7 1.4 1 0 0 1 1 1 0 TMPIT-like protein Baculo_PEP_C PF04513.7 gi|20090837|ref|NP_616912.1| - 2.3 8.0 13.6 9 6.1 9.5 2.0 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|20090837|ref|NP_616912.1| - 3.2 6.8 7.3 1.3 8.1 3.1 1.7 2 0 0 2 2 2 0 Reovirus sigma C capsid protein COG2 PF06148.6 gi|20090837|ref|NP_616912.1| - 3.4 7.5 11.2 3.1 7.6 3.3 2.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 LMBR1 PF04791.11 gi|20090837|ref|NP_616912.1| - 5.4 5.4 4.4 9 4.7 3.0 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein ADIP PF11559.3 gi|20090837|ref|NP_616912.1| - 6.6 6.6 22.1 0.13 12.2 9.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding MEDS PF14417.1 gi|20090839|ref|NP_616914.1| - 8.3e-90 298.9 2.0 3.9e-89 296.8 0.1 2.7 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_3 PF08447.6 gi|20090839|ref|NP_616914.1| - 4.1e-54 180.6 1.8 6e-19 67.9 0.1 4.9 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|20090839|ref|NP_616914.1| - 2.1e-47 159.7 1.2 1e-16 61.1 0.0 5.3 5 0 0 5 5 5 4 PAS domain PAS PF00989.19 gi|20090839|ref|NP_616914.1| - 7.9e-36 122.2 1.0 1e-14 54.2 0.0 4.7 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.7 gi|20090839|ref|NP_616914.1| - 1e-34 118.1 2.8 1.6e-34 117.5 0.6 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.5 gi|20090839|ref|NP_616914.1| - 2e-15 56.8 0.0 1.3e-10 41.2 0.0 4.3 4 0 0 4 4 4 1 PAS fold HATPase_c PF02518.21 gi|20090839|ref|NP_616914.1| - 3.3e-09 36.4 0.1 8.2e-09 35.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20090839|ref|NP_616914.1| - 1.7e-06 27.6 0.0 2e-05 24.2 0.0 2.9 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.9 gi|20090839|ref|NP_616914.1| - 0.00049 20.4 0.0 0.0013 19.1 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20090839|ref|NP_616914.1| - 0.0017 18.1 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|20090839|ref|NP_616914.1| - 0.042 13.4 0.1 2.6 7.6 0.0 3.0 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF2423 PF10338.4 gi|20090839|ref|NP_616914.1| - 0.55 10.2 5.7 3.1 7.8 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2423) Glyoxalase_2 PF12681.2 gi|20090842|ref|NP_616917.1| - 0.00015 22.3 0.0 0.00015 22.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain ATP-grasp_4 PF13535.1 gi|20090843|ref|NP_616918.1| - 7.7e-39 133.3 0.1 1.1e-38 132.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20090843|ref|NP_616918.1| - 3.8e-05 22.5 0.0 8.7e-05 21.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|20090843|ref|NP_616918.1| - 0.00037 20.3 0.0 0.00064 19.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_TupA PF14305.1 gi|20090843|ref|NP_616918.1| - 0.00059 19.2 0.1 0.0013 18.0 0.0 1.7 1 0 0 1 1 1 1 TupA-like ATPgrasp ATPgrasp_ST PF14397.1 gi|20090843|ref|NP_616918.1| - 0.11 11.5 0.1 0.22 10.5 0.1 1.4 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Fasciclin PF02469.17 gi|20090844|ref|NP_616919.1| - 5.8e-34 116.8 1.1 5.9e-34 116.8 0.0 1.5 2 0 0 2 2 2 1 Fasciclin domain GrpE PF01025.14 gi|20090844|ref|NP_616919.1| - 0.011 15.2 5.8 0.017 14.6 4.0 1.2 1 0 0 1 1 1 0 GrpE Spore_YhcN_YlaJ PF09580.5 gi|20090844|ref|NP_616919.1| - 0.016 15.3 1.9 0.024 14.7 1.3 1.3 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DUF2117 PF09890.4 gi|20090844|ref|NP_616919.1| - 0.016 14.3 0.4 0.016 14.3 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2117) IncA PF04156.9 gi|20090845|ref|NP_616920.1| - 6.6e-07 29.1 3.8 7.2e-07 28.9 2.6 1.0 1 0 0 1 1 1 1 IncA protein Atg14 PF10186.4 gi|20090845|ref|NP_616920.1| - 6.1e-05 22.1 11.8 0.00012 21.1 8.1 1.4 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Reo_sigmaC PF04582.7 gi|20090845|ref|NP_616920.1| - 7.8e-05 22.0 5.9 8.8e-05 21.8 4.1 1.0 1 0 0 1 1 1 1 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|20090845|ref|NP_616920.1| - 0.00012 21.8 1.8 0.00027 20.7 0.7 1.8 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF2762 PF10960.3 gi|20090845|ref|NP_616920.1| - 0.00047 19.8 5.8 0.0023 17.5 0.7 2.5 1 1 2 3 3 3 1 Protein of unknown function (DUF2762) IFT57 PF10498.4 gi|20090845|ref|NP_616920.1| - 0.00047 19.0 10.6 0.00052 18.8 7.3 1.0 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DUF3393 PF11873.3 gi|20090845|ref|NP_616920.1| - 0.00061 19.3 2.4 0.00081 18.9 1.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3393) PCYCGC PF13798.1 gi|20090845|ref|NP_616920.1| - 0.00066 19.3 1.0 0.00084 19.0 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function with PCYCGC motif YgaB PF14182.1 gi|20090845|ref|NP_616920.1| - 0.00068 19.8 5.5 1.5 9.0 0.5 3.0 1 1 2 3 3 3 0 YgaB-like protein Spore_YhcN_YlaJ PF09580.5 gi|20090845|ref|NP_616920.1| - 0.00078 19.5 4.5 0.00098 19.2 3.1 1.0 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Med9 PF07544.8 gi|20090845|ref|NP_616920.1| - 0.0011 18.6 9.4 0.13 12.0 1.9 2.7 1 1 2 3 3 3 3 RNA polymerase II transcription mediator complex subunit 9 SpoOE-like PF09388.5 gi|20090845|ref|NP_616920.1| - 0.0013 18.2 8.2 3.1 7.3 0.0 4.4 1 1 4 5 5 5 0 Spo0E like sporulation regulatory protein Vps5 PF09325.5 gi|20090845|ref|NP_616920.1| - 0.0013 18.0 4.8 0.0017 17.6 3.3 1.1 1 0 0 1 1 1 1 Vps5 C terminal like DUF3552 PF12072.3 gi|20090845|ref|NP_616920.1| - 0.002 17.3 14.6 0.0039 16.4 10.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) Mod_r PF07200.8 gi|20090845|ref|NP_616920.1| - 0.0022 17.9 10.2 0.0044 16.9 7.1 1.4 1 1 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein FliJ PF02050.11 gi|20090845|ref|NP_616920.1| - 0.0026 17.8 4.0 0.0033 17.4 2.7 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein Spc7 PF08317.6 gi|20090845|ref|NP_616920.1| - 0.0027 16.4 14.9 0.0046 15.6 10.3 1.3 1 1 0 1 1 1 1 Spc7 kinetochore protein EzrA PF06160.7 gi|20090845|ref|NP_616920.1| - 0.0028 15.9 10.6 0.0035 15.5 7.4 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF3450 PF11932.3 gi|20090845|ref|NP_616920.1| - 0.0032 16.7 1.7 0.0036 16.6 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Sec34 PF04136.10 gi|20090845|ref|NP_616920.1| - 0.0037 16.9 10.5 0.076 12.7 1.1 2.4 1 1 1 2 2 2 2 Sec34-like family AAA_13 PF13166.1 gi|20090845|ref|NP_616920.1| - 0.0038 15.7 10.7 0.0043 15.5 7.4 1.1 1 0 0 1 1 1 1 AAA domain Fib_alpha PF08702.5 gi|20090845|ref|NP_616920.1| - 0.0059 16.7 7.4 0.0099 16.0 5.1 1.3 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|20090845|ref|NP_616920.1| - 0.0072 16.1 6.0 0.064 13.0 1.9 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) MCPsignal PF00015.16 gi|20090845|ref|NP_616920.1| - 0.0074 15.8 3.7 0.0087 15.6 2.5 1.1 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Prominin PF05478.6 gi|20090845|ref|NP_616920.1| - 0.008 13.7 9.8 0.016 12.8 2.0 2.0 1 1 1 2 2 2 2 Prominin Laminin_II PF06009.7 gi|20090845|ref|NP_616920.1| - 0.0085 15.8 12.1 0.045 13.4 8.4 1.8 1 1 0 1 1 1 1 Laminin Domain II ATG16 PF08614.6 gi|20090845|ref|NP_616920.1| - 0.011 15.6 11.1 0.015 15.1 7.7 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Mnd1 PF03962.10 gi|20090845|ref|NP_616920.1| - 0.011 15.3 7.5 0.014 15.0 5.2 1.2 1 0 0 1 1 1 0 Mnd1 family Ly49 PF08391.5 gi|20090845|ref|NP_616920.1| - 0.012 15.7 5.8 0.018 15.1 4.0 1.4 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region Apolipoprotein PF01442.13 gi|20090845|ref|NP_616920.1| - 0.014 14.8 2.4 0.02 14.4 1.7 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain V_ATPase_I PF01496.14 gi|20090845|ref|NP_616920.1| - 0.015 13.1 6.9 0.019 12.8 4.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Seryl_tRNA_N PF02403.17 gi|20090845|ref|NP_616920.1| - 0.016 15.2 13.4 0.6 10.1 9.8 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Filament PF00038.16 gi|20090845|ref|NP_616920.1| - 0.017 14.5 10.8 0.02 14.3 7.5 1.0 1 0 0 1 1 1 0 Intermediate filament protein DUF1510 PF07423.6 gi|20090845|ref|NP_616920.1| - 0.021 14.2 6.5 0.023 14.1 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF4201 PF13870.1 gi|20090845|ref|NP_616920.1| - 0.022 14.2 13.7 0.045 13.1 9.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Gasdermin PF04598.7 gi|20090845|ref|NP_616920.1| - 0.025 13.3 2.8 0.071 11.8 1.9 1.7 1 1 0 1 1 1 0 Gasdermin family Phage_GPO PF05929.6 gi|20090845|ref|NP_616920.1| - 0.03 13.5 1.9 0.044 13.0 1.3 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase COG2 PF06148.6 gi|20090845|ref|NP_616920.1| - 0.03 14.1 7.7 0.12 12.2 1.2 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3972 PF13118.1 gi|20090845|ref|NP_616920.1| - 0.032 14.3 8.4 0.04 13.9 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3972) COG5 PF10392.4 gi|20090845|ref|NP_616920.1| - 0.035 14.0 6.0 0.051 13.5 4.2 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 DUF848 PF05852.6 gi|20090845|ref|NP_616920.1| - 0.037 13.8 8.5 0.056 13.2 5.9 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Prefoldin PF02996.12 gi|20090845|ref|NP_616920.1| - 0.043 13.4 8.7 0.53 9.9 1.6 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF2968 PF11180.3 gi|20090845|ref|NP_616920.1| - 0.045 13.1 2.3 0.052 12.9 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Osmo_CC PF08946.5 gi|20090845|ref|NP_616920.1| - 0.051 13.6 9.6 0.6 10.1 0.4 3.1 1 1 2 3 3 3 0 Osmosensory transporter coiled coil Syntaxin_2 PF14523.1 gi|20090845|ref|NP_616920.1| - 0.056 13.4 14.4 0.5 10.4 3.0 2.1 1 1 1 2 2 2 0 Syntaxin-like protein GAS PF13851.1 gi|20090845|ref|NP_616920.1| - 0.062 12.4 13.2 0.077 12.1 9.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3573 PF12097.3 gi|20090845|ref|NP_616920.1| - 0.065 11.8 5.2 0.081 11.5 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) AAA_27 PF13514.1 gi|20090845|ref|NP_616920.1| - 0.065 10.9 4.9 0.1 10.2 3.4 1.2 1 0 0 1 1 1 0 AAA domain N_NLPC_P60 PF12912.2 gi|20090845|ref|NP_616920.1| - 0.071 13.2 0.0 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 NLPC_P60 stabilising domain, N term NPV_P10 PF05531.7 gi|20090845|ref|NP_616920.1| - 0.071 13.3 5.1 1.1 9.5 3.6 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF3347 PF11827.3 gi|20090845|ref|NP_616920.1| - 0.084 12.8 5.9 0.81 9.6 4.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3347) TBPIP PF07106.8 gi|20090845|ref|NP_616920.1| - 0.087 12.3 11.4 0.13 11.7 7.9 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GLE1 PF07817.8 gi|20090845|ref|NP_616920.1| - 0.088 11.7 4.8 0.17 10.8 3.3 1.5 1 1 0 1 1 1 0 GLE1-like protein DUF2500 PF10694.4 gi|20090845|ref|NP_616920.1| - 0.099 12.6 0.9 0.47 10.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2500) ParB PF08775.5 gi|20090845|ref|NP_616920.1| - 0.11 12.7 8.0 2.1 8.6 0.7 2.1 1 1 1 2 2 2 0 ParB family DASH_Dad2 PF08654.5 gi|20090845|ref|NP_616920.1| - 0.12 12.4 6.7 0.5 10.4 4.3 2.7 1 1 0 1 1 1 0 DASH complex subunit Dad2 OSTbeta PF15048.1 gi|20090845|ref|NP_616920.1| - 0.12 12.4 7.7 0.73 9.9 5.4 1.9 1 1 0 1 1 1 0 Organic solute transporter subunit beta protein Adeno_PIX PF03955.9 gi|20090845|ref|NP_616920.1| - 0.12 12.8 6.0 3.3 8.2 0.6 2.1 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Transposase_1 PF01359.13 gi|20090845|ref|NP_616920.1| - 0.14 11.9 2.1 48 3.8 0.0 3.3 1 1 2 4 4 4 0 Transposase (partial DDE domain) DUF3080 PF11279.3 gi|20090845|ref|NP_616920.1| - 0.14 11.2 4.9 0.2 10.7 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) YbbR PF07949.7 gi|20090845|ref|NP_616920.1| - 0.14 12.2 2.8 8.5 6.5 0.2 2.3 1 1 1 2 2 2 0 YbbR-like protein TarH PF02203.10 gi|20090845|ref|NP_616920.1| - 0.14 11.9 4.1 0.3 10.8 2.8 1.6 1 1 0 1 1 1 0 Tar ligand binding domain homologue MT PF12777.2 gi|20090845|ref|NP_616920.1| - 0.15 10.7 3.5 0.83 8.3 2.1 1.9 1 1 1 2 2 2 0 Microtubule-binding stalk of dynein motor DUF812 PF05667.6 gi|20090845|ref|NP_616920.1| - 0.16 10.4 8.7 0.18 10.2 6.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) OmpH PF03938.9 gi|20090845|ref|NP_616920.1| - 0.16 11.9 1.3 0.21 11.5 0.9 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) TMF_DNA_bd PF12329.3 gi|20090845|ref|NP_616920.1| - 0.16 11.7 18.1 0.28 11.0 11.6 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding UPF0449 PF15136.1 gi|20090845|ref|NP_616920.1| - 0.17 12.1 7.7 1.6 9.0 1.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Peptidase_S49_N PF08496.5 gi|20090845|ref|NP_616920.1| - 0.18 11.6 3.3 0.33 10.7 2.3 1.5 1 1 0 1 1 1 0 Peptidase family S49 N-terminal DUF2664 PF10867.3 gi|20090845|ref|NP_616920.1| - 0.19 12.3 1.6 7.1 7.3 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2664) DUF2450 PF10475.4 gi|20090845|ref|NP_616920.1| - 0.2 10.5 6.3 0.27 10.0 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) Prefoldin_2 PF01920.15 gi|20090845|ref|NP_616920.1| - 0.21 11.3 13.2 0.82 9.4 2.4 2.2 1 1 1 2 2 2 0 Prefoldin subunit RelB_N PF12910.2 gi|20090845|ref|NP_616920.1| - 0.23 10.8 4.9 64 3.0 0.0 4.2 1 1 4 5 5 5 0 Antitoxin of toxin-antitoxin stability system N-terminal Nab2 PF11517.3 gi|20090845|ref|NP_616920.1| - 0.23 11.5 5.0 2.2 8.4 0.9 2.3 1 1 1 2 2 2 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) AATF-Che1 PF13339.1 gi|20090845|ref|NP_616920.1| - 0.24 11.5 6.4 0.33 11.0 4.4 1.2 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor HrpB7 PF09486.5 gi|20090845|ref|NP_616920.1| - 0.24 11.3 1.5 6.4 6.6 0.1 2.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF342 PF03961.8 gi|20090845|ref|NP_616920.1| - 0.3 9.4 7.8 0.32 9.3 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spectrin PF00435.16 gi|20090845|ref|NP_616920.1| - 0.3 11.3 5.3 1.1 9.5 4.0 1.6 1 1 1 2 2 2 0 Spectrin repeat DASH_Dam1 PF08653.5 gi|20090845|ref|NP_616920.1| - 0.31 10.8 8.9 4.6 7.0 2.9 3.0 1 1 2 3 3 3 0 DASH complex subunit Dam1 DUF4446 PF14584.1 gi|20090845|ref|NP_616920.1| - 0.31 10.8 7.2 0.2 11.4 2.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF2140 PF09911.4 gi|20090845|ref|NP_616920.1| - 0.31 10.1 2.9 0.21 10.7 0.4 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2140) Phage_HK97_TLTM PF06120.6 gi|20090845|ref|NP_616920.1| - 0.33 10.2 6.0 0.42 9.9 4.2 1.1 1 0 0 1 1 1 0 Tail length tape measure protein Flagellin_C PF00700.16 gi|20090845|ref|NP_616920.1| - 0.34 11.1 8.4 1.7 8.8 1.6 2.5 1 1 1 2 2 2 0 Bacterial flagellin C-terminal helical region SlyX PF04102.7 gi|20090845|ref|NP_616920.1| - 0.38 11.1 5.9 0.82 10.0 1.9 2.0 1 1 1 2 2 2 0 SlyX BLOC1_2 PF10046.4 gi|20090845|ref|NP_616920.1| - 0.44 10.6 13.4 0.66 10.1 3.3 2.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF262 PF03235.9 gi|20090845|ref|NP_616920.1| - 0.47 10.3 7.5 0.59 10.0 5.2 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 Exonuc_VII_L PF02601.10 gi|20090845|ref|NP_616920.1| - 0.49 9.5 9.9 0.6 9.2 6.9 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit Dynamin_N PF00350.18 gi|20090845|ref|NP_616920.1| - 0.5 10.1 5.4 1.3 8.7 3.7 1.7 1 1 0 1 1 1 0 Dynamin family RTBV_P46 PF06216.6 gi|20090845|ref|NP_616920.1| - 0.51 9.1 6.6 2.3 6.9 4.5 1.8 1 1 0 1 1 1 0 Rice tungro bacilliform virus P46 protein SID-1_RNA_chan PF13965.1 gi|20090845|ref|NP_616920.1| - 0.58 8.2 2.4 0.64 8.1 1.6 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Conotoxin PF02950.12 gi|20090845|ref|NP_616920.1| - 0.59 10.9 2.0 1.2 10.0 0.1 2.0 1 1 1 2 2 2 0 Conotoxin DUF1319 PF07028.6 gi|20090845|ref|NP_616920.1| - 0.59 10.3 9.2 1 9.5 6.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) HSCB_C PF07743.8 gi|20090845|ref|NP_616920.1| - 0.65 10.5 8.0 3.6 8.0 0.9 2.5 1 1 2 3 3 3 0 HSCB C-terminal oligomerisation domain DUF745 PF05335.8 gi|20090845|ref|NP_616920.1| - 0.69 9.4 4.6 0.91 9.0 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) CorA PF01544.13 gi|20090845|ref|NP_616920.1| - 0.69 8.8 7.5 0.82 8.6 5.2 1.3 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein TMPIT PF07851.8 gi|20090845|ref|NP_616920.1| - 0.71 8.8 8.9 1.1 8.2 6.2 1.3 1 1 0 1 1 1 0 TMPIT-like protein PMC2NT PF08066.7 gi|20090845|ref|NP_616920.1| - 0.75 10.1 8.2 1.5 9.1 0.6 2.1 1 1 1 2 2 2 0 PMC2NT (NUC016) domain DUF148 PF02520.12 gi|20090845|ref|NP_616920.1| - 0.78 9.5 8.3 3.3 7.5 5.8 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF148 Bacillus_HBL PF05791.6 gi|20090845|ref|NP_616920.1| - 0.78 9.0 9.0 1.8 7.9 6.2 1.5 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Alpha-E PF04168.7 gi|20090845|ref|NP_616920.1| - 0.8 9.0 5.0 3.4 6.9 0.5 2.0 1 1 1 2 2 2 0 A predicted alpha-helical domain with a conserved ER motif. DUF3735 PF12537.3 gi|20090845|ref|NP_616920.1| - 0.96 9.5 8.2 7.5 6.6 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3735) Sec8_exocyst PF04048.9 gi|20090845|ref|NP_616920.1| - 0.98 9.0 10.0 35 4.0 6.8 2.2 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain YscO PF07321.7 gi|20090845|ref|NP_616920.1| - 1.1 9.0 7.3 4.5 7.0 0.6 2.0 1 1 1 2 2 2 0 Type III secretion protein YscO LMBR1 PF04791.11 gi|20090845|ref|NP_616920.1| - 1.2 7.6 5.3 1.3 7.4 3.7 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Cytokin_check_N PF10407.4 gi|20090845|ref|NP_616920.1| - 1.2 8.7 5.0 16 5.2 0.2 3.1 1 1 4 5 5 5 0 Cdc14 phosphatase binding protein N-terminus DUF2730 PF10805.3 gi|20090845|ref|NP_616920.1| - 1.4 8.6 7.0 3.9 7.2 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) YtxH PF12732.2 gi|20090845|ref|NP_616920.1| - 1.4 9.3 5.6 18 5.8 3.9 2.2 1 1 0 1 1 1 0 YtxH-like protein Lectin_N PF03954.9 gi|20090845|ref|NP_616920.1| - 1.4 8.2 9.8 7.1 6.0 6.8 1.9 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain FlaC_arch PF05377.6 gi|20090845|ref|NP_616920.1| - 1.5 8.8 18.7 7.9 6.4 3.4 3.0 1 1 4 5 5 5 0 Flagella accessory protein C (FlaC) DUF4613 PF15390.1 gi|20090845|ref|NP_616920.1| - 1.5 6.9 8.0 1.9 6.5 5.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) Vps51 PF08700.6 gi|20090845|ref|NP_616920.1| - 1.5 8.7 8.5 16 5.4 5.9 2.0 1 1 0 1 1 1 0 Vps51/Vps67 DUF4200 PF13863.1 gi|20090845|ref|NP_616920.1| - 1.5 8.7 13.0 2.9 7.8 0.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Cluap1 PF10234.4 gi|20090845|ref|NP_616920.1| - 1.8 7.7 12.0 2.4 7.2 1.6 1.8 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF4337 PF14235.1 gi|20090845|ref|NP_616920.1| - 1.9 8.2 4.9 2.9 7.7 2.4 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) ETRAMP PF09716.5 gi|20090845|ref|NP_616920.1| - 2.1 8.3 7.5 49 3.9 5.2 2.4 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Med15_fungi PF05397.7 gi|20090845|ref|NP_616920.1| - 3.2 7.7 7.6 5.9 6.8 0.5 2.3 1 1 0 2 2 2 0 Mediator complex subunit 15 Cauli_AT PF03233.8 gi|20090845|ref|NP_616920.1| - 3.3 7.3 11.3 6.4 6.4 7.8 1.4 1 1 0 1 1 1 0 Aphid transmission protein Fmp27_WPPW PF10359.4 gi|20090845|ref|NP_616920.1| - 3.9 5.7 11.2 4.5 5.5 7.8 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain zf-C4H2 PF10146.4 gi|20090845|ref|NP_616920.1| - 4.5 7.2 10.6 5.6 6.9 7.3 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein IATP PF04568.7 gi|20090845|ref|NP_616920.1| - 4.6 7.3 6.8 20 5.2 0.6 2.9 1 1 2 3 3 2 0 Mitochondrial ATPase inhibitor, IATP DUF3958 PF13125.1 gi|20090845|ref|NP_616920.1| - 5.5 6.9 10.2 2.5 8.0 1.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3958) SpoIIAA-like PF11964.3 gi|20090846|ref|NP_616921.1| - 2.2e-32 111.6 0.2 2.4e-32 111.4 0.1 1.0 1 0 0 1 1 1 1 SpoIIAA-like Phage_XkdX PF09693.5 gi|20090846|ref|NP_616921.1| - 0.053 13.0 0.0 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 Phage uncharacterised protein (Phage_XkdX) Sulfate_transp PF00916.15 gi|20090847|ref|NP_616922.1| - 3.5e-48 164.0 14.4 3.5e-48 164.0 10.0 2.4 2 1 1 3 3 3 1 Sulfate transporter family Sulfate_tra_GLY PF13792.1 gi|20090847|ref|NP_616922.1| - 1.1e-19 69.8 5.9 1.1e-19 69.8 4.1 4.1 3 1 2 5 5 5 1 Sulfate transporter N-terminal domain with GLY motif STAS PF01740.16 gi|20090847|ref|NP_616922.1| - 3.6e-14 52.1 0.2 8.1e-14 51.0 0.1 1.5 1 0 0 1 1 1 1 STAS domain Alpha-amylase PF00128.19 gi|20090848|ref|NP_616923.1| - 3.2e-24 85.8 0.0 6.2e-22 78.4 0.0 3.0 1 1 0 1 1 1 1 Alpha amylase, catalytic domain CBM_48 PF02922.13 gi|20090848|ref|NP_616923.1| - 7.6e-11 41.9 0.0 0.00068 19.6 0.0 2.8 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Glyco_hydro_31 PF01055.21 gi|20090848|ref|NP_616923.1| - 0.017 14.0 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 31 hDGE_amylase PF14701.1 gi|20090848|ref|NP_616923.1| - 0.17 10.7 0.0 0.28 10.0 0.0 1.3 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Peptidase_M13_N PF05649.8 gi|20090849|ref|NP_616924.1| - 9.3e-109 364.0 0.9 1.5e-108 363.3 0.6 1.3 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.16 gi|20090849|ref|NP_616924.1| - 6.4e-62 208.3 0.0 1.1e-61 207.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 Abhydrolase_5 PF12695.2 gi|20090850|ref|NP_616925.1| - 1e-13 51.2 0.0 4.2e-13 49.2 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF1100 PF06500.6 gi|20090850|ref|NP_616925.1| - 2.1e-12 46.3 0.0 2.8e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_6 PF12697.2 gi|20090850|ref|NP_616925.1| - 1.9e-10 41.0 0.0 3.1e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|20090850|ref|NP_616925.1| - 1.6e-09 37.3 0.0 2.2e-07 30.3 0.0 2.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.7 gi|20090850|ref|NP_616925.1| - 0.00092 17.8 0.0 0.066 11.6 0.0 2.5 2 1 1 3 3 3 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.6 gi|20090850|ref|NP_616925.1| - 0.0062 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|20090850|ref|NP_616925.1| - 0.052 13.1 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|20090850|ref|NP_616925.1| - 0.13 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative lysophospholipase DLH PF01738.13 gi|20090850|ref|NP_616925.1| - 0.15 11.3 0.0 2.9 7.0 0.0 2.3 3 0 0 3 3 3 0 Dienelactone hydrolase family SBF PF01758.11 gi|20090851|ref|NP_616926.1| - 3.4e-42 143.9 20.8 3.4e-42 143.9 14.4 1.8 3 0 0 3 3 3 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|20090851|ref|NP_616926.1| - 2.5e-18 66.2 23.9 3.1e-18 65.9 16.6 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|20090851|ref|NP_616926.1| - 0.62 8.2 25.5 0.012 13.9 9.4 2.8 1 1 2 3 3 3 0 Membrane transport protein S4 PF01479.20 gi|20090852|ref|NP_616927.1| - 5.4e-13 48.1 0.5 1.7e-12 46.5 0.1 2.0 2 0 0 2 2 2 1 S4 domain Methyltransf_31 PF13847.1 gi|20090852|ref|NP_616927.1| - 2.9e-09 36.6 0.0 4.4e-08 32.8 0.0 2.2 1 1 1 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|20090852|ref|NP_616927.1| - 4.9e-08 33.1 0.0 1.1e-07 32.0 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.12 gi|20090852|ref|NP_616927.1| - 1.7e-06 27.1 0.0 2.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_26 PF13659.1 gi|20090852|ref|NP_616927.1| - 6.4e-06 26.1 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090852|ref|NP_616927.1| - 1.4e-05 25.6 0.0 2.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090852|ref|NP_616927.1| - 5.1e-05 23.0 0.0 7.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|20090852|ref|NP_616927.1| - 0.00012 21.6 0.1 0.00029 20.3 0.1 1.7 1 0 0 1 1 1 1 S4 domain Methyltransf_11 PF08241.7 gi|20090852|ref|NP_616927.1| - 0.00037 20.9 0.0 0.0014 19.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|20090852|ref|NP_616927.1| - 0.0037 18.0 0.0 0.0067 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090852|ref|NP_616927.1| - 0.044 14.1 0.0 0.078 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|20090852|ref|NP_616927.1| - 0.059 12.7 0.1 0.69 9.2 0.0 2.1 1 1 1 2 2 2 0 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|20090852|ref|NP_616927.1| - 0.09 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF2119 PF09892.4 gi|20090853|ref|NP_616928.1| - 3.7e-77 257.9 0.0 5.1e-77 257.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) DUF4256 PF14066.1 gi|20090853|ref|NP_616928.1| - 0.19 11.2 0.8 0.31 10.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4256) zf-ribbon_3 PF13248.1 gi|20090854|ref|NP_616929.1| - 2.3e-05 23.4 2.4 3.9e-05 22.7 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|20090854|ref|NP_616929.1| - 0.0013 18.4 1.3 0.0029 17.3 0.9 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20090854|ref|NP_616929.1| - 0.0019 17.6 4.5 0.0036 16.7 3.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Tox-PL-2 PF15643.1 gi|20090854|ref|NP_616929.1| - 0.0073 16.2 0.0 0.024 14.6 0.0 1.9 1 1 0 1 1 1 1 Papain fold toxin 2 Transglut_core PF01841.14 gi|20090854|ref|NP_616929.1| - 0.015 15.4 0.1 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily NRN1 PF15056.1 gi|20090854|ref|NP_616929.1| - 0.022 14.6 0.1 0.048 13.6 0.1 1.5 1 0 0 1 1 1 0 Neuritin protein family NinF PF05810.7 gi|20090854|ref|NP_616929.1| - 0.088 12.6 1.3 5.6 6.8 0.3 2.7 2 0 0 2 2 2 0 NinF protein Cript PF10235.4 gi|20090854|ref|NP_616929.1| - 0.6 10.4 5.8 2.2 8.6 1.2 2.5 2 0 0 2 2 2 0 Microtubule-associated protein CRIPT DUF2116 PF09889.4 gi|20090854|ref|NP_616929.1| - 1 9.2 3.5 1.6 8.5 0.7 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF4277 PF14104.1 gi|20090855|ref|NP_616930.1| - 3.9e-41 139.8 0.0 9e-41 138.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20090855|ref|NP_616930.1| - 1.6e-10 40.9 0.1 2.5e-09 37.0 0.0 2.2 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20090855|ref|NP_616930.1| - 0.02 14.3 0.5 0.053 12.9 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 Na_Ca_ex PF01699.19 gi|20090856|ref|NP_616931.1| - 5e-59 197.9 37.4 1.6e-29 102.3 8.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Wzy_C PF04932.10 gi|20090856|ref|NP_616931.1| - 0.26 11.0 0.1 0.26 11.0 0.0 2.9 1 1 0 2 2 2 0 O-Antigen ligase Flg_bb_rod PF00460.15 gi|20090856|ref|NP_616931.1| - 2.7 7.8 7.9 9.7 6.0 1.7 2.4 2 0 0 2 2 2 0 Flagella basal body rod protein Lactamase_B PF00753.22 gi|20090857|ref|NP_616932.1| - 4.3e-25 88.5 1.8 5.2e-25 88.2 1.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|20090857|ref|NP_616932.1| - 0.00024 20.6 0.0 0.00025 20.6 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|20090857|ref|NP_616932.1| - 0.022 14.4 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CTP_transf_1 PF01148.15 gi|20090858|ref|NP_616933.1| - 3.4e-11 43.3 18.1 1.5e-10 41.1 4.0 2.3 1 1 0 2 2 2 2 Cytidylyltransferase family Polysacc_synt_C PF14667.1 gi|20090858|ref|NP_616933.1| - 0.0081 15.9 1.5 0.0081 15.9 1.1 3.2 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Sulfate_tra_GLY PF13792.1 gi|20090858|ref|NP_616933.1| - 0.041 13.5 0.9 0.54 9.9 0.0 2.6 2 0 0 2 2 2 0 Sulfate transporter N-terminal domain with GLY motif Abi PF02517.11 gi|20090858|ref|NP_616933.1| - 0.085 13.0 0.5 0.085 13.0 0.3 2.6 2 1 0 2 2 2 0 CAAX protease self-immunity DUF1469 PF07332.6 gi|20090858|ref|NP_616933.1| - 0.31 10.7 0.1 0.31 10.7 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1469) Gram_pos_anchor PF00746.16 gi|20090858|ref|NP_616933.1| - 0.62 9.9 0.1 0.62 9.9 0.0 3.3 3 0 0 3 3 3 0 Gram positive anchor DUF4491 PF14898.1 gi|20090858|ref|NP_616933.1| - 2.9 8.0 5.6 1.7 8.8 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4491) Glyoxalase_2 PF12681.2 gi|20090859|ref|NP_616934.1| - 3.9e-12 46.7 0.0 4.9e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|20090859|ref|NP_616934.1| - 0.00017 21.5 0.0 0.00053 19.9 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Response_reg PF00072.19 gi|20090860|ref|NP_616935.1| - 1.2e-25 89.6 0.0 1.4e-25 89.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|20090861|ref|NP_616936.1| - 1.1e-37 127.9 0.3 1.6e-17 63.3 0.0 4.1 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|20090861|ref|NP_616936.1| - 7.2e-32 109.4 0.0 2e-31 107.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20090861|ref|NP_616936.1| - 6.7e-30 103.5 0.0 1.5e-15 57.4 0.0 3.5 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.19 gi|20090861|ref|NP_616936.1| - 2.4e-27 95.1 0.0 5.3e-27 94.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|20090861|ref|NP_616936.1| - 2.9e-23 81.6 0.5 1.5e-22 79.3 0.4 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|20090861|ref|NP_616936.1| - 1.7e-19 69.6 0.0 4.2e-07 29.7 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|20090861|ref|NP_616936.1| - 7.7e-13 48.4 0.1 1.4e-05 25.1 0.1 3.4 3 0 0 3 3 3 2 PAS fold Hpt PF01627.18 gi|20090861|ref|NP_616936.1| - 9.7e-13 47.9 0.1 6.2e-12 45.3 0.0 2.5 1 0 0 1 1 1 1 Hpt domain PAS_8 PF13188.1 gi|20090861|ref|NP_616936.1| - 0.00091 19.0 0.0 0.0039 17.0 0.0 2.1 1 0 0 1 1 1 1 PAS domain tRNA_SAD PF07973.9 gi|20090862|ref|NP_616937.1| - 2.3e-14 52.9 0.5 4.3e-14 52.1 0.4 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|20090862|ref|NP_616937.1| - 1.3e-13 50.1 0.0 2.1e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) PepSY_2 PF13670.1 gi|20090863|ref|NP_616938.1| - 0.045 13.6 0.6 0.12 12.3 0.1 1.9 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DDE_Tnp_1 PF01609.16 gi|20090864|ref|NP_616939.1| - 5.9e-06 25.9 1.0 8.2e-06 25.5 0.7 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF3931 PF13082.1 gi|20090864|ref|NP_616939.1| - 0.0074 16.1 0.9 0.041 13.7 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3931) HTH_12 PF08461.5 gi|20090864|ref|NP_616939.1| - 0.013 15.2 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain NosD PF05048.8 gi|20090865|ref|NP_616940.1| - 6.2e-38 130.2 13.6 6.2e-38 130.2 9.4 2.0 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Peptidase_S8 PF00082.17 gi|20090865|ref|NP_616940.1| - 1.1e-21 77.2 0.1 2.3e-16 59.7 0.1 2.6 2 0 0 2 2 2 2 Subtilase family Beta_helix PF13229.1 gi|20090865|ref|NP_616940.1| - 1.2e-06 28.3 18.2 5.3e-06 26.2 12.5 2.2 1 1 0 1 1 1 1 Right handed beta helix region Pectinesterase PF01095.14 gi|20090865|ref|NP_616940.1| - 0.088 11.3 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Pectinesterase DUF3643 PF12356.3 gi|20090865|ref|NP_616940.1| - 0.22 10.8 0.0 3.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3643) Tropomyosin_1 PF12718.2 gi|20090867|ref|NP_616942.1| - 0.0099 15.7 41.6 0.064 13.1 2.8 4.5 3 1 1 4 4 4 3 Tropomyosin like DUF1664 PF07889.7 gi|20090867|ref|NP_616942.1| - 0.044 13.5 0.2 0.044 13.5 0.1 4.2 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|20090867|ref|NP_616942.1| - 0.078 12.7 23.7 0.066 12.9 1.7 3.9 2 2 2 4 4 4 0 Laminin Domain II Baculo_PEP_C PF04513.7 gi|20090867|ref|NP_616942.1| - 0.19 11.5 12.0 14 5.4 1.5 4.3 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|20090867|ref|NP_616942.1| - 0.27 10.3 7.2 0.53 9.4 0.1 3.6 3 1 1 4 4 4 0 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|20090867|ref|NP_616942.1| - 0.77 8.1 29.3 1.1 7.6 10.0 3.0 2 1 0 2 2 2 0 AAA domain COMP PF11598.3 gi|20090867|ref|NP_616942.1| - 0.88 9.6 4.1 1.3 9.1 0.1 3.2 4 0 0 4 4 3 0 Cartilage oligomeric matrix protein IncA PF04156.9 gi|20090867|ref|NP_616942.1| - 1.5 8.4 37.4 0.2 11.2 5.1 3.9 2 1 0 3 3 3 0 IncA protein PilJ PF13675.1 gi|20090867|ref|NP_616942.1| - 2.2 8.6 15.9 3.7 7.8 1.5 4.4 2 2 1 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term Occludin_ELL PF07303.8 gi|20090867|ref|NP_616942.1| - 4 8.2 20.8 1.8 9.3 0.2 5.4 2 2 3 5 5 5 0 Occludin homology domain GAS PF13851.1 gi|20090867|ref|NP_616942.1| - 8.5 5.5 41.7 0.12 11.5 5.3 3.7 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding ATG16 PF08614.6 gi|20090867|ref|NP_616942.1| - 9.1 6.0 34.0 5.2 6.8 5.7 4.0 2 1 2 4 4 4 0 Autophagy protein 16 (ATG16) rve PF00665.21 gi|20090868|ref|NP_616943.1| - 1.1e-13 51.3 0.0 2.3e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20090868|ref|NP_616943.1| - 6.5e-06 25.5 0.1 0.00013 21.3 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20090868|ref|NP_616943.1| - 0.0001 22.4 0.0 0.00022 21.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20090868|ref|NP_616943.1| - 0.00011 21.7 0.2 0.00026 20.5 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20090868|ref|NP_616943.1| - 0.033 14.1 0.2 0.069 13.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20090868|ref|NP_616943.1| - 0.098 12.1 0.1 0.3 10.6 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal NHL PF01436.16 gi|20090869|ref|NP_616944.1| - 2.9e-67 219.4 10.8 6.6e-12 44.7 0.1 6.4 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.6 gi|20090869|ref|NP_616944.1| - 1.1e-30 105.0 23.2 3.1e-05 23.6 0.2 6.6 6 0 0 6 6 6 6 Beta-propeller repeat SGL PF08450.7 gi|20090869|ref|NP_616944.1| - 2.3e-25 89.4 6.0 0.0041 16.5 0.0 6.0 1 1 5 6 6 6 6 SMP-30/Gluconolaconase/LRE-like region SdiA-regulated PF06977.6 gi|20090869|ref|NP_616944.1| - 1.9e-08 33.5 1.9 0.15 10.9 0.0 5.5 4 2 1 5 5 5 2 SdiA-regulated Reg_prop PF07494.6 gi|20090869|ref|NP_616944.1| - 4.8e-06 25.9 1.1 39 4.7 0.0 6.2 6 0 0 6 6 6 0 Two component regulator propeller MRJP PF03022.11 gi|20090869|ref|NP_616944.1| - 1.6e-05 24.3 0.4 0.75 8.9 0.0 3.4 1 1 3 4 4 4 4 Major royal jelly protein Phytase-like PF13449.1 gi|20090869|ref|NP_616944.1| - 0.0014 17.9 0.0 12 5.0 0.0 4.4 2 2 3 5 5 5 0 Esterase-like activity of phytase US22 PF02393.11 gi|20090869|ref|NP_616944.1| - 0.0048 16.9 0.2 51 3.9 0.0 5.2 5 1 0 5 5 5 0 US22 like Cytotoxic PF09000.5 gi|20090869|ref|NP_616944.1| - 0.016 15.1 1.0 11 6.1 0.0 4.0 3 1 1 4 4 4 0 Cytotoxic DUF1952 PF09189.5 gi|20090869|ref|NP_616944.1| - 0.057 13.1 2.9 41 3.9 0.0 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1952) DUF4179 PF13786.1 gi|20090869|ref|NP_616944.1| - 0.068 13.3 0.1 0.068 13.3 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) Ldl_recept_b PF00058.12 gi|20090869|ref|NP_616944.1| - 0.11 12.7 5.8 14 6.1 0.0 5.4 7 2 0 7 7 5 0 Low-density lipoprotein receptor repeat class B Toxin_54 PF15533.1 gi|20090869|ref|NP_616944.1| - 0.12 12.6 2.7 29 4.9 0.0 4.9 5 1 1 6 6 6 0 Putative toxin 54 ABC2_membrane_4 PF12730.2 gi|20090869|ref|NP_616944.1| - 0.13 11.4 3.3 0.19 10.8 0.5 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein NUMOD1 PF07453.8 gi|20090869|ref|NP_616944.1| - 0.13 12.1 7.4 13 5.8 0.0 4.4 5 0 0 5 5 5 0 NUMOD1 domain Clathrin_bdg PF15045.1 gi|20090869|ref|NP_616944.1| - 0.24 10.9 0.8 3.1 7.3 0.0 3.0 2 1 1 3 3 3 0 Clathrin-binding box of Aftiphilin, vesicle trafficking DUF4367 PF14285.1 gi|20090869|ref|NP_616944.1| - 0.3 10.3 0.1 0.3 10.3 0.0 2.1 2 0 0 2 2 1 0 Domain of unknown function (DUF4367) Syd PF07348.7 gi|20090871|ref|NP_616946.1| - 0.0092 15.3 0.8 0.017 14.4 0.5 1.4 1 0 0 1 1 1 1 Syd protein (SUKH-2) DUF1886 PF09171.5 gi|20090871|ref|NP_616946.1| - 0.048 12.6 0.3 0.24 10.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1886) Ribosomal_S17 PF00366.15 gi|20090872|ref|NP_616947.1| - 2.5e-16 59.4 0.5 4.8e-16 58.5 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein S17 DUF1680 PF07944.7 gi|20090872|ref|NP_616947.1| - 0.0012 17.2 0.0 0.002 16.4 0.0 1.3 1 0 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) TPR_12 PF13424.1 gi|20090872|ref|NP_616947.1| - 0.0052 16.6 0.2 0.82 9.6 0.0 3.7 2 1 3 5 5 5 1 Tetratricopeptide repeat Reo_sigmaC PF04582.7 gi|20090872|ref|NP_616947.1| - 0.0055 15.9 4.4 0.0095 15.1 1.1 2.4 3 0 0 3 3 3 1 Reovirus sigma C capsid protein DUF4606 PF15379.1 gi|20090872|ref|NP_616947.1| - 0.091 12.8 4.3 2.1 8.4 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4606) Phage_integrase PF00589.17 gi|20090874|ref|NP_616949.1| - 6.1e-12 45.5 0.0 7.3e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family rve PF00665.21 gi|20090875|ref|NP_616950.1| - 7.6e-20 71.2 0.0 1.4e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20090875|ref|NP_616950.1| - 7.2e-07 28.6 0.1 1.7e-06 27.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20090875|ref|NP_616950.1| - 1.2e-05 25.0 0.2 2.8e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|20090875|ref|NP_616950.1| - 3.4e-05 23.3 0.0 9e-05 21.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.1 gi|20090875|ref|NP_616950.1| - 3.8e-05 23.1 0.0 8.6e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain Sigma70_r4 PF04545.11 gi|20090875|ref|NP_616950.1| - 0.0019 17.4 0.2 0.026 13.8 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|20090875|ref|NP_616950.1| - 0.0068 16.5 0.0 0.2 11.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20090875|ref|NP_616950.1| - 0.0085 15.6 0.1 0.047 13.2 0.0 2.1 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_Tc3_1 PF11427.3 gi|20090875|ref|NP_616950.1| - 0.0097 15.5 0.0 0.035 13.7 0.0 1.9 1 0 0 1 1 1 1 Tc3 transposase HTH_3 PF01381.17 gi|20090875|ref|NP_616950.1| - 0.015 15.1 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20090875|ref|NP_616950.1| - 0.032 14.3 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20090875|ref|NP_616950.1| - 0.033 14.1 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20090875|ref|NP_616950.1| - 0.05 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4_2 PF08281.7 gi|20090875|ref|NP_616950.1| - 0.052 13.0 0.1 0.15 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|20090875|ref|NP_616950.1| - 0.073 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding rve_2 PF13333.1 gi|20090875|ref|NP_616950.1| - 0.099 12.7 0.0 0.3 11.1 0.0 1.9 1 0 0 1 1 1 0 Integrase core domain MerR_1 PF13411.1 gi|20090875|ref|NP_616950.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein IstB_IS21 PF01695.12 gi|20090876|ref|NP_616951.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20090876|ref|NP_616951.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20090876|ref|NP_616951.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20090876|ref|NP_616951.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20090876|ref|NP_616951.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20090876|ref|NP_616951.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20090876|ref|NP_616951.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20090876|ref|NP_616951.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20090876|ref|NP_616951.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20090876|ref|NP_616951.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20090876|ref|NP_616951.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20090876|ref|NP_616951.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20090876|ref|NP_616951.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20090876|ref|NP_616951.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20090876|ref|NP_616951.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20090876|ref|NP_616951.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20090876|ref|NP_616951.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20090876|ref|NP_616951.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20090876|ref|NP_616951.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20090876|ref|NP_616951.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20090876|ref|NP_616951.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20090876|ref|NP_616951.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20090876|ref|NP_616951.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20090876|ref|NP_616951.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20090876|ref|NP_616951.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20090876|ref|NP_616951.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20090876|ref|NP_616951.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20090876|ref|NP_616951.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family TDH PF03347.8 gi|20090877|ref|NP_616952.1| - 0.045 13.3 0.0 0.065 12.7 0.0 1.2 1 0 0 1 1 1 0 Vibrio thermostable direct hemolysin AA_permease PF00324.16 gi|20090878|ref|NP_616953.1| - 2.3e-06 26.2 1.9 0.002 16.5 0.0 2.1 2 0 0 2 2 2 2 Amino acid permease AA_permease_2 PF13520.1 gi|20090878|ref|NP_616953.1| - 9.4e-05 21.1 3.8 0.00093 17.8 2.7 1.9 1 1 0 1 1 1 1 Amino acid permease Yip1 PF04893.12 gi|20090878|ref|NP_616953.1| - 0.0015 18.0 0.5 0.0015 18.0 0.3 1.9 2 0 0 2 2 2 1 Yip1 domain Fer4_NifH PF00142.13 gi|20090880|ref|NP_616955.1| - 7.4e-88 294.2 0.0 1.1e-87 293.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Oxidored_nitro PF00148.14 gi|20090880|ref|NP_616955.1| - 4e-62 210.1 0.0 5.1e-62 209.7 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase CbiA PF01656.18 gi|20090880|ref|NP_616955.1| - 1.2e-13 50.9 0.0 2.3e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20090880|ref|NP_616955.1| - 1.3e-07 30.9 0.0 4e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|20090880|ref|NP_616955.1| - 6.7e-05 22.8 0.0 0.00025 21.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|20090880|ref|NP_616955.1| - 0.0036 16.9 0.0 0.024 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20090880|ref|NP_616955.1| - 0.031 14.2 0.1 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain YhjQ PF06564.7 gi|20090880|ref|NP_616955.1| - 0.051 12.9 0.0 0.098 11.9 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein MipZ PF09140.6 gi|20090880|ref|NP_616955.1| - 0.06 12.4 0.1 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.1 gi|20090880|ref|NP_616955.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Oxidored_nitro PF00148.14 gi|20090881|ref|NP_616956.1| - 5e-45 153.8 0.0 6.4e-45 153.4 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Ion_trans PF00520.26 gi|20090882|ref|NP_616957.1| - 6.1e-22 77.8 14.1 6.1e-22 77.8 9.8 1.8 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|20090882|ref|NP_616957.1| - 1.5e-14 53.4 7.2 1.5e-14 53.4 5.0 2.6 2 1 0 2 2 2 1 Ion channel zf-ribbon_3 PF13248.1 gi|20090882|ref|NP_616957.1| - 9.7e-06 24.6 2.7 1.4e-05 24.1 1.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain PKD_channel PF08016.7 gi|20090882|ref|NP_616957.1| - 0.0039 15.6 9.4 0.023 13.1 1.1 2.2 1 1 1 2 2 2 2 Polycystin cation channel DZR PF12773.2 gi|20090882|ref|NP_616957.1| - 0.0081 15.9 2.1 0.013 15.3 1.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20090882|ref|NP_616957.1| - 0.22 11.0 4.9 1.3 8.6 3.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|20090882|ref|NP_616957.1| - 0.54 10.1 2.4 1.1 9.1 1.7 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-CCHC_3 PF13917.1 gi|20090882|ref|NP_616957.1| - 1.5 8.6 6.6 0.66 9.7 0.4 2.2 1 1 1 2 2 2 0 Zinc knuckle RNA_pol_Rpb4 PF03874.11 gi|20090885|ref|NP_616960.1| - 0.079 12.9 1.7 0.1 12.6 1.2 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb4 Sec8_exocyst PF04048.9 gi|20090885|ref|NP_616960.1| - 0.17 11.5 1.3 0.3 10.7 0.9 1.4 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain HTH_24 PF13412.1 gi|20090886|ref|NP_616961.1| - 0.034 13.5 1.6 0.041 13.2 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2465 PF10239.4 gi|20090886|ref|NP_616961.1| - 0.11 11.6 0.1 0.16 11.1 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2465) OrfB_Zn_ribbon PF07282.6 gi|20090887|ref|NP_616962.1| - 0.056 13.1 0.4 0.083 12.5 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-HIT PF04438.11 gi|20090887|ref|NP_616962.1| - 0.21 11.2 3.3 3.6 7.3 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger Cys_rich_CPCC PF14206.1 gi|20090887|ref|NP_616962.1| - 1.2 8.6 5.4 3.4 7.2 3.8 1.8 1 1 0 1 1 1 0 Cysteine-rich CPCC ADK_lid PF05191.9 gi|20090887|ref|NP_616962.1| - 3 7.5 7.2 1.1 8.9 0.5 2.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid RHS_repeat PF05593.9 gi|20090890|ref|NP_616965.1| - 0.00045 20.3 1.8 0.54 10.5 0.0 4.0 4 0 0 4 4 4 2 RHS Repeat DUF1975 PF09318.5 gi|20090890|ref|NP_616965.1| - 0.01 15.4 4.3 0.03 13.9 3.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1975) ParBc PF02195.13 gi|20090890|ref|NP_616965.1| - 0.11 12.5 0.0 0.38 10.8 0.0 1.9 2 0 0 2 2 2 0 ParB-like nuclease domain Imm39 PF15600.1 gi|20090891|ref|NP_616966.1| - 6.8e-71 237.9 4.6 7.8e-71 237.7 3.2 1.0 1 0 0 1 1 1 1 Immunity protein 39 RHS_repeat PF05593.9 gi|20090892|ref|NP_616967.1| - 6.5e-39 131.3 66.9 1.3e-07 31.5 0.8 16.7 15 1 1 16 16 16 10 RHS Repeat Colicin_D PF11429.3 gi|20090892|ref|NP_616967.1| - 9.5e-30 102.6 1.6 9.5e-30 102.6 1.1 3.0 2 0 0 2 2 2 1 Colicin D DUF2341 PF10102.4 gi|20090892|ref|NP_616967.1| - 2.4e-26 91.6 1.2 2.4e-26 91.6 0.8 4.4 3 0 0 3 3 3 1 Domain of unknown function (DUF2341) TcdB_toxin_midN PF12256.3 gi|20090892|ref|NP_616967.1| - 3.1e-24 85.3 30.3 3e-19 69.1 2.0 8.4 3 3 5 8 8 8 5 Insecticide toxin TcdB middle/N-terminal region FG-GAP PF01839.18 gi|20090892|ref|NP_616967.1| - 5.8e-11 41.7 47.7 0.03 14.0 2.3 6.9 6 0 0 6 6 6 5 FG-GAP repeat VCBS PF13517.1 gi|20090892|ref|NP_616967.1| - 1e-09 38.6 42.3 2.3e-06 27.8 5.4 8.7 9 2 2 11 11 11 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella EF-hand_5 PF13202.1 gi|20090892|ref|NP_616967.1| - 1.2 8.6 13.9 21 4.7 0.1 6.0 5 0 0 5 5 5 0 EF hand tRNA_deacylase PF04414.7 gi|20090893|ref|NP_616968.1| - 1.1e-67 227.2 0.0 1.4e-67 226.9 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF3147 PF11345.3 gi|20090894|ref|NP_616969.1| - 9.9e-38 128.5 5.2 1.1e-37 128.3 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) GlpM PF06942.7 gi|20090894|ref|NP_616969.1| - 0.08 13.2 1.9 0.1 12.8 1.3 1.2 1 0 0 1 1 1 0 GlpM protein MatE PF01554.13 gi|20090897|ref|NP_616972.1| - 4.7e-53 179.1 41.5 1.7e-29 102.5 7.6 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|20090897|ref|NP_616972.1| - 3.6e-09 36.5 9.9 3.6e-09 36.5 6.9 4.2 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|20090897|ref|NP_616972.1| - 9.4e-06 25.0 30.6 0.024 13.8 5.1 3.2 1 1 2 3 3 3 3 Polysaccharide biosynthesis protein MarR_2 PF12802.2 gi|20090898|ref|NP_616973.1| - 5e-15 54.9 0.0 7.8e-15 54.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20090898|ref|NP_616973.1| - 5.3e-15 54.8 0.0 1.9e-14 53.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|20090898|ref|NP_616973.1| - 1.2e-08 35.1 0.1 2.1e-08 34.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|20090898|ref|NP_616973.1| - 2.3e-06 26.9 0.0 3.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20090898|ref|NP_616973.1| - 8.5e-06 25.3 0.3 3.3e-05 23.5 0.2 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|20090898|ref|NP_616973.1| - 2.1e-05 24.3 0.1 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|20090898|ref|NP_616973.1| - 2.1e-05 24.0 0.1 3.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain RPA_C PF08784.6 gi|20090898|ref|NP_616973.1| - 2.2e-05 24.8 0.0 3.4e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_34 PF13601.1 gi|20090898|ref|NP_616973.1| - 3.9e-05 23.5 0.1 5.5e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|20090898|ref|NP_616973.1| - 0.00049 19.6 0.3 0.0011 18.5 0.2 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_36 PF13730.1 gi|20090898|ref|NP_616973.1| - 0.00059 19.9 0.0 0.0017 18.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20090898|ref|NP_616973.1| - 0.00074 19.2 0.0 0.0017 18.1 0.0 1.6 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|20090898|ref|NP_616973.1| - 0.0015 18.0 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|20090898|ref|NP_616973.1| - 0.002 17.5 0.1 0.0027 17.1 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|20090898|ref|NP_616973.1| - 0.0031 16.8 0.1 0.0062 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.7 gi|20090898|ref|NP_616973.1| - 0.0035 17.1 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC PadR PF03551.9 gi|20090898|ref|NP_616973.1| - 0.007 16.1 0.7 0.013 15.3 0.5 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_29 PF13551.1 gi|20090898|ref|NP_616973.1| - 0.0086 16.2 0.2 0.013 15.6 0.1 1.4 1 1 0 1 1 1 1 Winged helix-turn helix PepSY_2 PF13670.1 gi|20090898|ref|NP_616973.1| - 0.022 14.6 0.2 0.034 14.0 0.2 1.2 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain HTH_23 PF13384.1 gi|20090898|ref|NP_616973.1| - 0.04 13.5 0.3 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain RNA_pol_Rpc34 PF05158.7 gi|20090898|ref|NP_616973.1| - 0.041 13.0 0.1 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_DeoR PF08220.7 gi|20090898|ref|NP_616973.1| - 0.057 12.9 0.1 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|20090898|ref|NP_616973.1| - 0.061 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ANT PF03374.9 gi|20090898|ref|NP_616973.1| - 0.075 13.0 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain Mga PF05043.8 gi|20090898|ref|NP_616973.1| - 0.089 13.0 0.0 0.22 11.8 0.0 1.7 1 1 0 1 1 1 0 Mga helix-turn-helix domain Rrf2 PF02082.15 gi|20090898|ref|NP_616973.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF2157 PF09925.4 gi|20090899|ref|NP_616974.1| - 3.8e-38 130.3 1.5 3.8e-38 130.3 1.0 3.7 3 1 1 4 4 4 1 Predicted membrane protein (DUF2157) DUF4401 PF14351.1 gi|20090899|ref|NP_616974.1| - 0.9 8.4 36.5 5.6 5.8 25.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4401) GDYXXLXY PF14345.1 gi|20090900|ref|NP_616975.1| - 3.3e-39 134.0 0.0 3.9e-39 133.7 0.0 1.1 1 0 0 1 1 1 1 GDYXXLXY protein MarR PF01047.17 gi|20090902|ref|NP_616977.1| - 7.9e-12 44.6 0.1 1.4e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20090902|ref|NP_616977.1| - 1.2e-09 38.3 0.0 1.9e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20090902|ref|NP_616977.1| - 6.3e-08 32.1 0.0 1.1e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|20090902|ref|NP_616977.1| - 6e-05 22.5 0.6 0.0004 19.9 0.0 2.2 2 1 0 2 2 2 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|20090902|ref|NP_616977.1| - 0.00032 20.6 0.0 0.00057 19.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|20090902|ref|NP_616977.1| - 0.0006 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix Ftsk_gamma PF09397.5 gi|20090902|ref|NP_616977.1| - 0.011 15.4 0.2 0.027 14.1 0.1 1.7 1 1 0 1 1 1 0 Ftsk gamma domain TrmB PF01978.14 gi|20090902|ref|NP_616977.1| - 0.027 14.1 0.4 0.093 12.4 0.1 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|20090902|ref|NP_616977.1| - 0.027 14.2 0.0 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family CARD PF00619.16 gi|20090902|ref|NP_616977.1| - 0.069 13.0 0.2 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Caspase recruitment domain MMPL PF03176.10 gi|20090903|ref|NP_616978.1| - 7.3e-65 218.8 8.3 1.5e-33 115.9 0.3 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|20090903|ref|NP_616978.1| - 5.2e-15 55.2 17.6 9.7e-09 34.8 2.9 2.8 2 1 1 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|20090903|ref|NP_616978.1| - 9.4e-10 37.9 27.6 7e-09 35.1 7.1 3.0 2 1 0 2 2 2 2 Protein export membrane protein Patched PF02460.13 gi|20090903|ref|NP_616978.1| - 3.9e-08 31.7 22.1 4.4e-06 24.9 2.3 3.0 3 0 0 3 3 3 2 Patched family ACR_tran PF00873.14 gi|20090903|ref|NP_616978.1| - 4.1e-06 24.5 9.0 4.1e-06 24.5 6.2 3.2 2 1 1 4 4 4 2 AcrB/AcrD/AcrF family TrmB PF01978.14 gi|20090904|ref|NP_616979.1| - 7e-23 80.1 0.0 9.8e-23 79.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|20090904|ref|NP_616979.1| - 1.4e-06 27.8 0.0 6.2e-06 25.7 0.0 2.0 1 1 1 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|20090904|ref|NP_616979.1| - 0.0012 18.4 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20090904|ref|NP_616979.1| - 0.021 14.5 0.0 0.051 13.2 0.0 1.7 1 1 1 2 2 2 0 MarR family DUF1495 PF07381.6 gi|20090904|ref|NP_616979.1| - 0.043 13.4 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_6 PF01418.12 gi|20090904|ref|NP_616979.1| - 0.064 13.0 0.1 0.18 11.5 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain, rpiR family Rrf2 PF02082.15 gi|20090904|ref|NP_616979.1| - 0.067 13.3 0.0 0.13 12.4 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|20090904|ref|NP_616979.1| - 0.14 12.2 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor Aldo_ket_red PF00248.16 gi|20090905|ref|NP_616980.1| - 1.7e-41 141.9 0.0 2.1e-41 141.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|20090905|ref|NP_616980.1| - 3.1e-11 43.4 4.7 7.6e-11 42.1 3.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20090905|ref|NP_616980.1| - 1.2e-09 38.3 6.5 1.2e-09 38.3 4.5 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20090905|ref|NP_616980.1| - 1e-08 35.4 6.2 7.9e-06 26.1 0.2 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20090905|ref|NP_616980.1| - 1.3e-08 34.7 4.7 2.9e-08 33.6 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20090905|ref|NP_616980.1| - 6.5e-07 29.0 7.1 1.9e-06 27.5 4.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20090905|ref|NP_616980.1| - 6.1e-06 26.5 7.2 1.8e-05 24.9 5.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20090905|ref|NP_616980.1| - 0.005 16.6 6.5 0.41 10.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20090905|ref|NP_616980.1| - 0.017 14.7 15.3 0.04 13.5 4.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20090905|ref|NP_616980.1| - 0.018 14.8 2.6 0.018 14.8 1.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20090905|ref|NP_616980.1| - 0.058 14.1 11.0 0.19 12.5 0.9 2.8 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|20090905|ref|NP_616980.1| - 0.086 12.4 6.7 0.32 10.6 0.5 2.4 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|20090905|ref|NP_616980.1| - 0.22 11.4 14.5 0.61 10.1 2.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20090905|ref|NP_616980.1| - 0.4 11.3 14.3 0.067 13.7 4.1 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20090905|ref|NP_616980.1| - 2 8.9 21.3 0.088 13.1 2.6 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain CMD PF02627.15 gi|20090906|ref|NP_616981.1| - 1.8e-11 43.6 0.0 2.5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PPR PF01535.15 gi|20090906|ref|NP_616981.1| - 0.019 14.8 0.1 3.2 7.9 0.0 2.5 2 0 0 2 2 2 0 PPR repeat DUF1661 PF07877.6 gi|20090907|ref|NP_616982.1| - 0.019 14.4 0.2 0.042 13.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1661) DUF2058 PF09831.4 gi|20090907|ref|NP_616982.1| - 0.098 12.5 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2058) DUF2207 PF09972.4 gi|20090910|ref|NP_616985.1| - 0.022 13.3 0.0 0.029 12.9 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CCDC-167 PF15188.1 gi|20090910|ref|NP_616985.1| - 0.042 13.7 0.5 0.083 12.8 0.4 1.5 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF485 PF04341.7 gi|20090910|ref|NP_616985.1| - 0.11 12.2 0.7 0.17 11.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Met_10 PF02475.11 gi|20090911|ref|NP_616986.1| - 1.9e-64 216.9 0.0 2.6e-64 216.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|20090911|ref|NP_616986.1| - 3.6e-09 37.1 0.0 6.6e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|20090911|ref|NP_616986.1| - 1.9e-07 30.7 0.0 3.3e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|20090911|ref|NP_616986.1| - 2.3e-06 27.6 0.0 4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090911|ref|NP_616986.1| - 5.8e-06 25.7 0.0 9.9e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|20090911|ref|NP_616986.1| - 0.00076 19.0 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|20090911|ref|NP_616986.1| - 0.0017 17.3 0.0 0.0021 17.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase GidB PF02527.10 gi|20090911|ref|NP_616986.1| - 0.0036 16.4 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PrmA PF06325.8 gi|20090911|ref|NP_616986.1| - 0.0076 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_21 PF05050.7 gi|20090911|ref|NP_616986.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase FkbM domain Cons_hypoth95 PF03602.10 gi|20090911|ref|NP_616986.1| - 0.04 13.3 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|20090911|ref|NP_616986.1| - 0.054 13.8 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.12 gi|20090911|ref|NP_616986.1| - 0.075 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase tRNA_U5-meth_tr PF05958.6 gi|20090911|ref|NP_616986.1| - 0.11 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|20090911|ref|NP_616986.1| - 0.11 11.4 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase AAA_17 PF13207.1 gi|20090913|ref|NP_616988.1| - 0.0038 18.0 0.0 0.081 13.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|20090913|ref|NP_616988.1| - 0.013 15.6 0.0 0.035 14.3 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|20090913|ref|NP_616988.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Response_reg PF00072.19 gi|20090915|ref|NP_616990.1| - 0.00078 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Bac_Ubq_Cox PF01654.12 gi|20090915|ref|NP_616990.1| - 0.03 12.7 0.0 0.045 12.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial Cytochrome Ubiquinol Oxidase MSG PF02349.10 gi|20090915|ref|NP_616990.1| - 1.5 8.8 4.6 0.86 9.6 0.7 2.3 2 0 0 2 2 2 0 Major surface glycoprotein PAAR_motif PF05488.8 gi|20090916|ref|NP_616991.1| - 5.1e-11 42.3 3.9 2.6e-07 30.5 0.3 2.1 1 1 1 2 2 2 2 PAAR motif DUF4150 PF13665.1 gi|20090916|ref|NP_616991.1| - 5.4e-06 26.2 0.7 1e-05 25.3 0.5 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4150) Transposase_20 PF02371.11 gi|20090917|ref|NP_616992.1| - 1.9e-25 88.7 0.0 2.7e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|20090918|ref|NP_616993.1| - 2.7e-11 43.3 0.2 4.4e-11 42.6 0.1 1.4 1 0 0 1 1 1 1 Transposase DUF3231 PF11553.3 gi|20090918|ref|NP_616993.1| - 0.081 12.4 0.1 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) YhfT PF10797.4 gi|20090918|ref|NP_616993.1| - 0.086 11.6 0.1 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function AAT PF03417.11 gi|20090919|ref|NP_616994.1| - 4.2e-81 271.6 0.0 6.9e-81 270.9 0.0 1.3 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase NAAA-beta PF15508.1 gi|20090919|ref|NP_616994.1| - 0.0002 21.6 0.1 0.0036 17.6 0.0 2.3 2 0 0 2 2 2 1 beta subunit of N-acylethanolamine-hydrolyzing acid amidase DDE_Tnp_1 PF01609.16 gi|20090920|ref|NP_616995.1| - 1e-08 35.0 0.0 3.7e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|20090920|ref|NP_616995.1| - 0.31 10.7 3.7 0.75 9.5 0.0 2.4 2 1 0 2 2 2 0 Transposase DDE domain Peptidase_M4_C PF02868.10 gi|20090921|ref|NP_616996.1| - 3.5e-48 163.4 0.0 8.9e-48 162.1 0.0 1.7 2 0 0 2 2 2 1 Thermolysin metallopeptidase, alpha-helical domain P_proprotein PF01483.15 gi|20090921|ref|NP_616996.1| - 1.3e-33 114.5 0.0 3.5e-17 61.9 0.0 2.6 2 0 0 2 2 2 2 Proprotein convertase P-domain Peptidase_M4 PF01447.13 gi|20090921|ref|NP_616996.1| - 3.9e-28 98.4 0.3 8e-28 97.4 0.2 1.5 1 0 0 1 1 1 1 Thermolysin metallopeptidase, catalytic domain FTP PF07504.8 gi|20090921|ref|NP_616996.1| - 8.9e-06 25.0 0.2 2.2e-05 23.8 0.1 1.6 1 0 0 1 1 1 1 Fungalysin/Thermolysin Propeptide Motif PepSY PF03413.14 gi|20090921|ref|NP_616996.1| - 0.00072 20.1 0.0 0.0026 18.3 0.0 2.1 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain YycI PF09648.5 gi|20090921|ref|NP_616996.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 YycH protein Peptidase_MA_2 PF13485.1 gi|20090921|ref|NP_616996.1| - 0.032 14.2 0.0 0.089 12.8 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily Cupin_2 PF07883.6 gi|20090922|ref|NP_616997.1| - 4.1e-13 48.6 0.0 8.4e-13 47.6 0.0 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|20090922|ref|NP_616997.1| - 1.8e-09 37.2 0.0 4e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|20090922|ref|NP_616997.1| - 3.2e-06 26.8 0.0 6.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cache_2 PF08269.6 gi|20090922|ref|NP_616997.1| - 6e-06 26.1 0.0 1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Cache domain MannoseP_isomer PF01050.13 gi|20090922|ref|NP_616997.1| - 0.0001 21.9 0.0 0.00019 21.0 0.0 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.7 gi|20090922|ref|NP_616997.1| - 0.0038 16.7 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.7 gi|20090922|ref|NP_616997.1| - 0.0055 16.0 0.0 0.018 14.3 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Exo_endo_phos PF03372.18 gi|20090923|ref|NP_616998.1| - 7.4e-27 94.8 0.0 8.6e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|20090923|ref|NP_616998.1| - 4.2e-12 45.7 0.0 8.5e-12 44.7 0.0 1.5 2 0 0 2 2 2 1 Endonuclease-reverse transcriptase Flavodoxin_5 PF12724.2 gi|20090924|ref|NP_616999.1| - 3.4e-31 108.1 0.0 4.4e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|20090924|ref|NP_616999.1| - 3.4e-06 27.1 0.0 4.9e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|20090924|ref|NP_616999.1| - 0.00036 19.9 0.0 0.00049 19.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|20090924|ref|NP_616999.1| - 0.0038 16.5 0.1 0.43 9.9 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin SBP_bac_5 PF00496.17 gi|20090924|ref|NP_616999.1| - 0.036 12.9 0.0 0.042 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle FMN_red PF03358.10 gi|20090924|ref|NP_616999.1| - 0.055 12.9 0.2 4.4 6.7 0.0 2.2 1 1 1 2 2 2 0 NADPH-dependent FMN reductase IstB_IS21 PF01695.12 gi|20090925|ref|NP_617000.1| - 3.9e-68 228.3 0.0 6e-68 227.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20090925|ref|NP_617000.1| - 6.3e-05 23.1 0.1 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20090925|ref|NP_617000.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|20090925|ref|NP_617000.1| - 0.00021 21.2 0.2 0.0028 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20090925|ref|NP_617000.1| - 0.00031 20.0 0.0 0.00046 19.4 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_17 PF13207.1 gi|20090925|ref|NP_617000.1| - 0.00056 20.7 1.6 0.0032 18.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20090925|ref|NP_617000.1| - 0.0011 18.3 0.1 0.0031 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|20090925|ref|NP_617000.1| - 0.0017 18.4 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|20090925|ref|NP_617000.1| - 0.0038 17.3 0.1 0.87 9.7 0.0 2.9 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20090925|ref|NP_617000.1| - 0.0069 15.4 0.1 0.011 14.8 0.0 1.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|20090925|ref|NP_617000.1| - 0.012 14.8 0.0 0.096 11.8 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|20090925|ref|NP_617000.1| - 0.018 14.9 0.5 0.061 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|20090925|ref|NP_617000.1| - 0.034 13.3 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20090925|ref|NP_617000.1| - 0.055 13.4 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20090925|ref|NP_617000.1| - 0.061 13.2 0.1 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20090925|ref|NP_617000.1| - 0.063 13.2 0.2 0.24 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|20090925|ref|NP_617000.1| - 0.072 12.5 3.1 0.19 11.1 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_19 PF13245.1 gi|20090925|ref|NP_617000.1| - 0.079 12.7 0.1 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|20090925|ref|NP_617000.1| - 0.12 11.1 0.0 0.24 10.1 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|20090925|ref|NP_617000.1| - 0.2 11.9 2.2 0.25 11.6 0.1 2.2 2 2 0 2 2 2 0 AAA domain rve PF00665.21 gi|20090926|ref|NP_617001.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20090926|ref|NP_617001.1| - 2e-05 24.0 0.0 5.1e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20090926|ref|NP_617001.1| - 0.00094 18.6 0.1 0.0023 17.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20090926|ref|NP_617001.1| - 0.0017 17.8 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20090926|ref|NP_617001.1| - 0.0049 16.4 0.3 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20090926|ref|NP_617001.1| - 0.0059 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|20090926|ref|NP_617001.1| - 0.013 15.0 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 HTH domain MerR_1 PF13411.1 gi|20090926|ref|NP_617001.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_5 PF01022.15 gi|20090926|ref|NP_617001.1| - 0.022 14.4 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|20090926|ref|NP_617001.1| - 0.028 13.9 0.0 0.075 12.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|20090926|ref|NP_617001.1| - 0.03 14.4 0.1 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix DUF2312 PF10073.4 gi|20090926|ref|NP_617001.1| - 0.043 13.1 0.0 2.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_28 PF13518.1 gi|20090926|ref|NP_617001.1| - 0.044 13.8 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|20090926|ref|NP_617001.1| - 0.046 13.5 0.2 0.9 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF746 PF05344.6 gi|20090926|ref|NP_617001.1| - 0.057 12.9 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_24 PF13412.1 gi|20090926|ref|NP_617001.1| - 0.083 12.2 0.8 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|20090926|ref|NP_617001.1| - 0.087 12.6 0.2 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix MEDS PF14417.1 gi|20090927|ref|NP_617002.1| - 6.1e-88 292.8 3.2 1.3e-87 291.7 0.1 2.7 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.7 gi|20090927|ref|NP_617002.1| - 1.4e-35 121.0 2.7 5.4e-35 119.0 0.5 2.9 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|20090927|ref|NP_617002.1| - 8e-24 83.5 0.1 1.4e-20 73.1 0.1 3.0 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|20090927|ref|NP_617002.1| - 4.1e-20 71.8 0.0 2.5e-16 59.6 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|20090927|ref|NP_617002.1| - 1.8e-19 70.0 0.1 1.8e-10 41.1 0.0 3.1 3 0 0 3 3 2 2 PAS domain HATPase_c PF02518.21 gi|20090927|ref|NP_617002.1| - 9.5e-13 47.8 0.1 2.5e-12 46.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|20090927|ref|NP_617002.1| - 1.9e-11 43.7 1.9 6.8e-05 22.6 0.0 3.6 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|20090927|ref|NP_617002.1| - 5.6e-07 29.1 0.0 2.5e-05 23.9 0.0 3.0 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.9 gi|20090927|ref|NP_617002.1| - 5e-05 23.6 1.2 0.0001 22.6 0.1 2.0 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20090927|ref|NP_617002.1| - 0.0019 17.9 0.0 0.0052 16.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4398 PF14346.1 gi|20090927|ref|NP_617002.1| - 0.0044 17.0 0.3 0.077 13.0 0.1 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) PAS_10 PF13596.1 gi|20090927|ref|NP_617002.1| - 0.029 14.6 0.0 0.47 10.7 0.0 2.6 2 0 0 2 2 2 0 PAS domain PAS_7 PF12860.2 gi|20090927|ref|NP_617002.1| - 0.085 12.8 0.0 22 5.0 0.0 3.5 3 0 0 3 3 3 0 PAS fold Kri1 PF05178.7 gi|20090927|ref|NP_617002.1| - 0.73 10.1 11.7 3.5 7.9 1.4 2.6 2 0 0 2 2 2 0 KRI1-like family MULE PF10551.4 gi|20090928|ref|NP_617003.1| - 9.6e-13 48.1 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20090928|ref|NP_617003.1| - 0.021 13.3 0.0 0.035 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20090928|ref|NP_617003.1| - 0.028 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20090928|ref|NP_617003.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20090928|ref|NP_617003.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20090928|ref|NP_617003.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20090928|ref|NP_617003.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20090928|ref|NP_617003.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger CobA_CobO_BtuR PF02572.10 gi|20090929|ref|NP_617004.1| - 6.1e-56 188.7 0.0 6.9e-56 188.5 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.12 gi|20090929|ref|NP_617004.1| - 6.8e-05 22.3 0.1 0.073 12.4 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.1 gi|20090929|ref|NP_617004.1| - 0.046 13.6 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20090929|ref|NP_617004.1| - 0.047 13.8 1.0 0.29 11.2 0.7 1.9 1 1 0 1 1 1 0 AAA domain Cation_efflux PF01545.16 gi|20090930|ref|NP_617005.1| - 5.7e-59 199.5 9.7 4.2e-57 193.4 6.9 2.0 2 0 0 2 2 2 2 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|20090930|ref|NP_617005.1| - 7.3e-19 67.6 0.0 1.4e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor TPR_12 PF13424.1 gi|20090931|ref|NP_617006.1| - 6.8e-12 45.1 0.9 1.3e-10 41.0 0.2 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090931|ref|NP_617006.1| - 2.1e-06 27.2 3.7 7.1e-05 22.3 0.4 2.2 1 1 1 2 2 2 2 TPR repeat TPR_8 PF13181.1 gi|20090931|ref|NP_617006.1| - 7.2e-06 25.4 7.8 0.25 11.1 1.2 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090931|ref|NP_617006.1| - 2.4e-05 23.8 2.3 0.008 16.0 0.5 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090931|ref|NP_617006.1| - 0.00011 21.6 3.5 0.078 12.6 0.6 3.1 3 1 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090931|ref|NP_617006.1| - 0.00053 20.0 1.9 0.0017 18.4 0.5 2.2 1 1 2 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|20090931|ref|NP_617006.1| - 0.0015 18.4 0.1 1 9.3 0.0 3.1 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|20090931|ref|NP_617006.1| - 0.0086 16.0 0.8 0.058 13.3 0.5 2.0 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090931|ref|NP_617006.1| - 0.0095 16.5 0.2 0.037 14.7 0.1 2.0 2 1 0 2 2 2 1 Tetratricopeptide repeat DUF4398 PF14346.1 gi|20090931|ref|NP_617006.1| - 0.015 15.3 2.2 0.015 15.3 1.5 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4398) DUF4363 PF14276.1 gi|20090931|ref|NP_617006.1| - 0.015 14.9 0.1 2.4 7.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) YfdX PF10938.3 gi|20090931|ref|NP_617006.1| - 0.028 14.0 0.4 0.038 13.6 0.3 1.5 1 1 0 1 1 1 0 YfdX protein TPR_19 PF14559.1 gi|20090931|ref|NP_617006.1| - 0.028 14.7 0.8 1.1 9.6 0.2 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090931|ref|NP_617006.1| - 0.032 14.8 0.0 11 6.9 0.0 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat MULE PF10551.4 gi|20090932|ref|NP_617007.1| - 6.6e-11 42.2 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20090932|ref|NP_617007.1| - 0.00059 19.1 2.3 0.0023 17.1 1.6 1.8 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20090932|ref|NP_617007.1| - 0.066 12.9 0.8 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20090932|ref|NP_617007.1| - 0.21 11.8 2.4 0.74 10.1 1.7 1.9 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.11 gi|20090932|ref|NP_617007.1| - 0.26 10.9 2.6 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|20090932|ref|NP_617007.1| - 0.28 10.5 2.8 1.3 8.4 0.4 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20090932|ref|NP_617007.1| - 0.3 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M3_N PF08439.5 gi|20090932|ref|NP_617007.1| - 2.2 8.4 6.7 0.31 11.1 1.0 2.4 3 0 0 3 3 3 0 Oligopeptidase F TPR_12 PF13424.1 gi|20090933|ref|NP_617008.1| - 1.8e-41 139.9 20.3 1.1e-07 31.6 0.1 9.1 3 3 4 8 8 8 8 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090933|ref|NP_617008.1| - 2e-26 91.0 3.8 0.0019 18.0 0.0 10.5 11 0 0 11 11 10 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20090933|ref|NP_617008.1| - 2.1e-26 89.6 33.3 0.0023 17.7 0.0 13.2 13 1 0 13 13 13 6 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090933|ref|NP_617008.1| - 3e-26 89.9 33.9 0.00016 21.1 0.0 12.5 13 1 1 14 14 14 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090933|ref|NP_617008.1| - 1.4e-25 88.6 26.9 0.00011 21.7 0.6 9.2 4 3 6 10 10 10 9 TPR repeat TPR_7 PF13176.1 gi|20090933|ref|NP_617008.1| - 2.2e-25 86.3 15.2 0.00072 19.1 0.0 11.8 12 0 0 12 12 12 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090933|ref|NP_617008.1| - 8.9e-22 75.6 4.6 0.31 11.7 0.0 13.0 6 3 6 12 12 11 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090933|ref|NP_617008.1| - 7.9e-21 72.2 44.1 0.00042 19.8 0.1 12.8 13 1 0 13 13 12 8 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090933|ref|NP_617008.1| - 3.1e-17 62.6 10.1 0.019 15.3 0.0 10.5 3 2 9 12 12 12 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090933|ref|NP_617008.1| - 5.2e-14 52.4 15.6 0.016 15.8 0.1 10.4 3 3 8 11 11 11 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20090933|ref|NP_617008.1| - 1.4e-11 43.5 16.2 1.1 9.6 0.0 12.3 11 6 2 13 13 12 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090933|ref|NP_617008.1| - 1e-07 31.9 26.3 0.03 14.7 0.0 10.1 10 2 1 11 11 9 2 Tetratricopeptide repeat DUF2225 PF09986.4 gi|20090933|ref|NP_617008.1| - 0.00031 20.2 17.9 0.67 9.3 2.6 5.1 2 1 3 5 5 5 2 Uncharacterized protein conserved in bacteria (DUF2225) PPR PF01535.15 gi|20090933|ref|NP_617008.1| - 0.0011 18.8 12.4 16 5.7 0.0 8.2 9 1 1 10 10 9 0 PPR repeat TPR_9 PF13371.1 gi|20090933|ref|NP_617008.1| - 0.0018 18.1 0.0 17 5.3 0.0 4.9 3 1 1 4 4 4 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|20090933|ref|NP_617008.1| - 0.0035 16.7 9.5 0.058 12.7 0.1 6.0 5 2 3 8 8 8 1 26S proteasome subunit RPN7 Sel1 PF08238.7 gi|20090933|ref|NP_617008.1| - 0.004 17.7 9.8 32 5.3 0.2 5.7 5 0 0 5 5 5 0 Sel1 repeat TPR_4 PF07721.9 gi|20090933|ref|NP_617008.1| - 0.021 15.1 0.2 3.9 8.1 0.1 3.5 4 0 0 4 4 2 0 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|20090933|ref|NP_617008.1| - 0.028 13.9 4.3 0.084 12.3 0.0 3.7 5 1 1 6 6 6 0 Foie gras liver health family 1 DUF3366 PF11846.3 gi|20090933|ref|NP_617008.1| - 0.061 13.1 0.0 9.4 6.0 0.0 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3366) PPR_3 PF13812.1 gi|20090933|ref|NP_617008.1| - 0.072 13.3 0.0 2.2e+02 2.5 0.0 5.1 5 0 0 5 5 5 0 Pentatricopeptide repeat domain MIT PF04212.13 gi|20090933|ref|NP_617008.1| - 0.2 11.5 22.6 1.3 8.9 0.2 7.4 6 2 2 8 8 8 0 MIT (microtubule interacting and transport) domain Clat_adaptor_s PF01217.15 gi|20090933|ref|NP_617008.1| - 0.48 10.1 4.3 1.3 8.7 0.2 2.7 3 0 0 3 3 3 0 Clathrin adaptor complex small chain DUF4386 PF14329.1 gi|20090934|ref|NP_617009.1| - 2.2e-26 92.6 26.5 5.4e-15 55.4 10.7 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4386) IBV_3C PF03620.8 gi|20090934|ref|NP_617009.1| - 4 7.4 7.3 1.3 8.9 1.2 2.3 2 1 0 2 2 2 0 IBV 3C protein COPI_assoc PF08507.5 gi|20090934|ref|NP_617009.1| - 8.6 6.0 12.0 0.38 10.4 3.2 2.2 1 1 1 2 2 2 0 COPI associated protein IstB_IS21 PF01695.12 gi|20090935|ref|NP_617010.1| - 4.5e-06 26.1 0.1 5.6e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein adh_short PF00106.20 gi|20090936|ref|NP_617011.1| - 3.7e-30 105.0 0.0 4.5e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|20090936|ref|NP_617011.1| - 1.2e-09 38.0 0.0 1.7e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|20090936|ref|NP_617011.1| - 6e-08 32.7 0.0 7.5e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase DUF1776 PF08643.5 gi|20090936|ref|NP_617011.1| - 2.7e-07 30.0 0.0 4.5e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) THF_DHG_CYH_C PF02882.14 gi|20090936|ref|NP_617011.1| - 0.00019 20.5 0.1 0.00031 19.8 0.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.1 gi|20090936|ref|NP_617011.1| - 0.0015 18.5 0.0 0.0022 18.0 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|20090936|ref|NP_617011.1| - 0.02 13.7 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|20090936|ref|NP_617011.1| - 0.029 13.2 0.0 0.047 12.5 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Pyr_redox PF00070.22 gi|20090936|ref|NP_617011.1| - 0.18 12.2 0.5 0.47 10.8 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF2062 PF09835.4 gi|20090937|ref|NP_617012.1| - 0.06 12.9 1.6 0.15 11.6 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) Glug PF07581.7 gi|20090937|ref|NP_617012.1| - 0.079 13.1 5.8 1.3 9.3 1.8 2.5 2 0 0 2 2 2 0 The GLUG motif Bacteriocin_IIc PF10439.4 gi|20090937|ref|NP_617012.1| - 0.79 9.8 4.7 1.3 9.1 3.2 1.4 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide PadR PF03551.9 gi|20090938|ref|NP_617013.1| - 1.1e-11 44.2 0.2 2.6e-11 43.1 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|20090938|ref|NP_617013.1| - 7.7e-05 22.6 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|20090938|ref|NP_617013.1| - 0.00021 20.8 0.5 0.00065 19.2 0.1 2.0 2 1 0 2 2 2 1 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|20090938|ref|NP_617013.1| - 0.0016 16.6 0.1 0.0024 16.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Fe_dep_repress PF01325.14 gi|20090938|ref|NP_617013.1| - 0.0038 17.1 0.4 0.058 13.3 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain AphA_like PF14557.1 gi|20090938|ref|NP_617013.1| - 0.017 14.7 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator TrmB PF01978.14 gi|20090938|ref|NP_617013.1| - 0.033 13.8 0.1 0.16 11.6 0.1 2.0 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|20090938|ref|NP_617013.1| - 0.05 13.5 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.15 gi|20090938|ref|NP_617013.1| - 0.11 12.2 0.0 18 5.0 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Helicase_C_2 PF13307.1 gi|20090941|ref|NP_617016.1| - 2.5e-20 73.0 0.0 5.7e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.10 gi|20090941|ref|NP_617016.1| - 2.2e-11 43.9 2.1 7.1e-11 42.2 0.1 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_2 PF06733.10 gi|20090941|ref|NP_617016.1| - 1.3e-06 27.9 2.7 5.3e-06 25.9 1.9 2.2 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|20090941|ref|NP_617016.1| - 0.0033 16.9 0.0 0.01 15.3 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|20090941|ref|NP_617016.1| - 0.0088 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain T2SE PF00437.15 gi|20090941|ref|NP_617016.1| - 0.011 14.6 0.4 0.16 10.8 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.24 gi|20090941|ref|NP_617016.1| - 0.058 13.5 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|20090941|ref|NP_617016.1| - 1.9 9.3 5.1 0.97 10.2 0.1 2.9 2 2 0 2 2 2 0 AAA domain TPR_12 PF13424.1 gi|20090942|ref|NP_617017.1| - 2e-21 75.6 15.7 2.7e-08 33.6 0.0 5.7 5 2 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090942|ref|NP_617017.1| - 8.1e-11 41.4 14.4 0.0027 17.3 0.1 5.9 1 1 4 6 6 6 4 TPR repeat TPR_2 PF07719.12 gi|20090942|ref|NP_617017.1| - 1e-07 31.3 19.8 0.33 10.9 0.5 7.4 9 0 0 9 9 8 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090942|ref|NP_617017.1| - 1.3e-07 31.2 7.5 0.056 13.3 0.2 6.4 6 1 0 6 6 6 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090942|ref|NP_617017.1| - 1.5e-07 31.4 3.5 2.4 9.0 0.0 6.6 6 2 1 7 7 7 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090942|ref|NP_617017.1| - 8.9e-05 21.9 19.4 0.21 11.2 0.7 7.4 8 1 0 8 8 8 2 Tetratricopeptide repeat SNAP PF14938.1 gi|20090942|ref|NP_617017.1| - 0.00053 19.2 5.0 1.4 7.9 0.5 3.8 1 1 1 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_17 PF13431.1 gi|20090942|ref|NP_617017.1| - 0.00083 19.3 9.5 1.5 9.2 0.0 6.1 6 1 0 7 7 5 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090942|ref|NP_617017.1| - 0.00092 19.3 13.0 0.12 12.5 0.0 5.1 4 1 2 6 6 5 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|20090942|ref|NP_617017.1| - 0.00095 19.4 13.9 2.9 8.2 0.2 6.6 5 2 1 6 6 6 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|20090942|ref|NP_617017.1| - 0.0022 17.3 13.3 0.1 11.9 0.2 4.8 3 2 2 5 5 5 1 26S proteasome subunit RPN7 TPR_16 PF13432.1 gi|20090942|ref|NP_617017.1| - 0.0029 18.2 5.8 54 4.6 0.1 5.8 5 2 1 6 6 5 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090942|ref|NP_617017.1| - 0.03 14.0 28.2 0.058 13.1 1.4 8.2 9 0 0 9 9 9 0 Tetratricopeptide repeat DUF4398 PF14346.1 gi|20090942|ref|NP_617017.1| - 0.085 12.9 3.8 7.4 6.6 0.4 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_21 PF09976.4 gi|20090942|ref|NP_617017.1| - 1.1 9.2 7.8 3.1 7.7 0.2 3.2 4 0 0 4 4 3 0 Tetratricopeptide repeat DUF2225 PF09986.4 gi|20090942|ref|NP_617017.1| - 1.2 8.4 11.4 3.4 7.0 1.1 2.8 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) SHNi-TPR PF10516.4 gi|20090942|ref|NP_617017.1| - 3.8 6.8 7.3 15 4.9 0.0 3.8 5 0 0 5 5 5 0 SHNi-TPR TPR_12 PF13424.1 gi|20090943|ref|NP_617018.1| - 8.5e-41 137.7 41.0 2e-08 34.0 0.4 11.5 6 3 7 13 13 13 10 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20090943|ref|NP_617018.1| - 1e-26 91.3 38.2 0.00011 21.5 0.0 12.7 13 0 0 13 13 11 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20090943|ref|NP_617018.1| - 4.3e-25 87.1 48.4 3.5e-05 23.3 1.0 10.9 5 3 6 12 12 12 9 TPR repeat TPR_2 PF07719.12 gi|20090943|ref|NP_617018.1| - 1.2e-24 84.1 47.3 0.0049 16.6 0.0 14.0 14 1 1 15 15 13 9 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20090943|ref|NP_617018.1| - 1.5e-20 72.4 21.3 0.00065 19.5 0.0 12.4 13 0 0 13 13 12 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20090943|ref|NP_617018.1| - 1.8e-19 68.4 6.8 5.8 7.8 0.0 15.0 12 3 4 16 16 13 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20090943|ref|NP_617018.1| - 1.3e-17 63.9 18.2 0.00039 20.7 0.4 11.7 8 3 4 12 12 11 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20090943|ref|NP_617018.1| - 2.1e-17 63.2 25.8 0.072 13.7 0.3 12.8 7 4 6 13 13 12 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20090943|ref|NP_617018.1| - 8.4e-16 56.5 59.7 0.00046 19.7 0.0 13.9 15 2 0 15 15 15 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20090943|ref|NP_617018.1| - 4.9e-15 54.0 33.5 0.17 11.7 0.1 14.5 14 3 0 14 14 13 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20090943|ref|NP_617018.1| - 1.6e-10 40.6 31.0 0.47 11.0 0.1 13.9 13 1 0 13 13 13 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20090943|ref|NP_617018.1| - 2.6e-10 40.3 27.3 0.011 15.8 0.1 8.6 6 3 2 8 8 8 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|20090943|ref|NP_617018.1| - 6.1e-07 29.1 33.4 0.14 12.4 0.0 14.4 15 3 0 15 15 12 2 Tetratricopeptide repeat DUF2225 PF09986.4 gi|20090943|ref|NP_617018.1| - 1e-05 25.1 29.4 0.0075 15.7 0.6 6.1 3 2 2 5 5 5 3 Uncharacterized protein conserved in bacteria (DUF2225) TOM20_plant PF06552.7 gi|20090943|ref|NP_617018.1| - 0.0002 21.0 10.1 0.043 13.3 0.3 6.0 5 3 3 8 8 8 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_9 PF13371.1 gi|20090943|ref|NP_617018.1| - 0.001 18.9 0.2 5.1 7.0 0.0 4.8 5 1 2 7 7 5 1 Tetratricopeptide repeat YfdX PF10938.3 gi|20090943|ref|NP_617018.1| - 0.0014 18.3 5.4 1.3 8.6 0.4 3.7 3 0 0 3 3 3 2 YfdX protein MAS20 PF02064.10 gi|20090943|ref|NP_617018.1| - 0.038 13.9 3.0 14 5.6 0.0 4.4 5 0 0 5 5 4 0 MAS20 protein import receptor PPR PF01535.15 gi|20090943|ref|NP_617018.1| - 0.11 12.5 8.6 25 5.1 0.1 6.4 6 0 0 6 6 6 0 PPR repeat DUF3366 PF11846.3 gi|20090943|ref|NP_617018.1| - 0.11 12.3 0.4 4 7.2 0.0 3.3 3 1 0 4 4 4 0 Domain of unknown function (DUF3366) Sel1 PF08238.7 gi|20090943|ref|NP_617018.1| - 0.17 12.5 21.1 2.2 9.0 0.1 6.4 7 0 0 7 7 5 0 Sel1 repeat BTAD PF03704.12 gi|20090943|ref|NP_617018.1| - 0.35 11.1 4.2 1.8 8.8 0.2 3.8 4 0 0 4 4 4 0 Bacterial transcriptional activator domain PTS_IIA PF02255.11 gi|20090943|ref|NP_617018.1| - 3.1 7.7 6.6 1.3 8.9 0.2 3.7 4 1 1 5 5 3 0 PTS system, Lactose/Cellobiose specific IIA subunit RVT_1 PF00078.22 gi|20090946|ref|NP_617021.1| - 7.2e-25 87.5 0.1 1.5e-24 86.5 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) Methylase_S PF01420.14 gi|20090947|ref|NP_617022.1| - 1.7e-23 83.4 3.1 3.8e-11 43.2 0.7 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain MULE PF10551.4 gi|20090948|ref|NP_617023.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20090948|ref|NP_617023.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20090948|ref|NP_617023.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20090948|ref|NP_617023.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20090948|ref|NP_617023.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20090948|ref|NP_617023.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20090948|ref|NP_617023.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20090948|ref|NP_617023.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger Methylase_S PF01420.14 gi|20090949|ref|NP_617024.1| - 2.6e-11 43.7 0.4 2.9e-11 43.6 0.3 1.0 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain ResIII PF04851.10 gi|20090950|ref|NP_617025.1| - 7.3e-32 110.6 0.9 3.7e-31 108.4 0.1 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|20090950|ref|NP_617025.1| - 9.3e-21 74.3 1.2 2.2e-18 66.6 0.0 3.5 3 0 0 3 3 3 1 EcoEI R protein C-terminal HSDR_N PF04313.9 gi|20090950|ref|NP_617025.1| - 4.2e-11 42.9 0.8 2.6e-09 37.0 0.1 3.2 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.24 gi|20090950|ref|NP_617025.1| - 2.4e-07 30.3 0.0 4.8e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|20090950|ref|NP_617025.1| - 4.9e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|20090950|ref|NP_617025.1| - 0.0037 16.9 0.1 0.0099 15.6 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|20090950|ref|NP_617025.1| - 0.0066 15.4 0.0 0.017 14.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|20090950|ref|NP_617025.1| - 0.013 14.9 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Ribosomal_L38e PF01781.13 gi|20090950|ref|NP_617025.1| - 0.022 14.4 0.1 0.071 12.8 0.1 1.9 1 0 0 1 1 1 0 Ribosomal L38e protein family TrwB_AAD_bind PF10412.4 gi|20090950|ref|NP_617025.1| - 0.024 13.2 0.6 1.5 7.3 0.0 2.9 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.11 gi|20090950|ref|NP_617025.1| - 0.03 13.5 0.2 0.23 10.6 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein FtsK_SpoIIIE PF01580.13 gi|20090950|ref|NP_617025.1| - 0.069 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family LysE PF01810.13 gi|20090952|ref|NP_617027.1| - 2.6e-22 79.0 6.5 2.6e-22 79.0 4.5 1.4 1 1 0 1 1 1 1 LysE type translocator ABC2_membrane PF01061.19 gi|20090953|ref|NP_617028.1| - 2.8e-45 154.0 20.1 3.9e-45 153.6 14.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|20090953|ref|NP_617028.1| - 6.6e-17 61.5 28.8 6.6e-17 61.5 20.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20090953|ref|NP_617028.1| - 1.2e-06 27.6 20.6 2.1e-06 26.8 14.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20090953|ref|NP_617028.1| - 4.3e-06 26.0 25.5 6.1e-06 25.5 17.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|20090954|ref|NP_617029.1| - 6.4e-35 120.4 0.0 1.2e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20090954|ref|NP_617029.1| - 2.1e-14 54.1 0.0 2.1e-12 47.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20090954|ref|NP_617029.1| - 2.2e-08 33.5 0.8 0.00044 19.4 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|20090954|ref|NP_617029.1| - 4.9e-06 27.0 0.3 5.9e-06 26.7 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20090954|ref|NP_617029.1| - 5.6e-06 25.7 0.2 9.9e-06 24.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|20090954|ref|NP_617029.1| - 0.001 17.8 0.0 0.0013 17.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|20090954|ref|NP_617029.1| - 0.0032 17.0 0.0 0.23 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20090954|ref|NP_617029.1| - 0.0058 15.8 0.1 0.031 13.5 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|20090954|ref|NP_617029.1| - 0.0071 15.5 0.4 0.02 14.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|20090954|ref|NP_617029.1| - 0.0086 16.2 0.2 0.047 13.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20090954|ref|NP_617029.1| - 0.023 14.1 0.6 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|20090954|ref|NP_617029.1| - 0.042 13.2 0.1 7.4 5.8 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA PF00004.24 gi|20090954|ref|NP_617029.1| - 0.055 13.6 0.4 0.73 10.0 0.2 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|20090954|ref|NP_617029.1| - 0.072 12.9 0.1 0.24 11.2 0.1 1.8 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20090954|ref|NP_617029.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|20090954|ref|NP_617029.1| - 0.12 11.8 0.1 0.24 10.8 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|20090954|ref|NP_617029.1| - 0.18 11.7 2.1 1.5 8.7 0.1 2.7 2 1 1 3 3 3 0 AAA domain Peptidase_M48 PF01435.13 gi|20090955|ref|NP_617030.1| - 2.3e-39 135.2 0.0 2.9e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|20090955|ref|NP_617030.1| - 3e-07 29.7 1.2 9.3e-07 28.1 0.0 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 ABC2_membrane_4 PF12730.2 gi|20090955|ref|NP_617030.1| - 0.2 10.7 13.0 0.17 11.0 1.2 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein Abi PF02517.11 gi|20090955|ref|NP_617030.1| - 0.2 11.7 5.2 0.76 9.9 0.7 2.3 2 0 0 2 2 2 0 CAAX protease self-immunity Tic20 PF09685.5 gi|20090955|ref|NP_617030.1| - 0.4 10.6 4.2 2.5 8.1 0.3 2.4 2 0 0 2 2 2 0 Tic20-like protein DUF1129 PF06570.6 gi|20090955|ref|NP_617030.1| - 0.5 9.6 7.2 0.15 11.3 0.2 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) FA_desaturase PF00487.19 gi|20090955|ref|NP_617030.1| - 0.64 9.4 5.9 1.3 8.4 0.7 2.3 2 0 0 2 2 2 0 Fatty acid desaturase MerC PF03203.9 gi|20090955|ref|NP_617030.1| - 1.6 9.1 5.8 1.4 9.2 1.5 2.5 1 1 1 2 2 2 0 MerC mercury resistance protein DUF457 PF04307.9 gi|20090957|ref|NP_617032.1| - 5.1e-16 58.3 7.1 6.5e-16 58.0 4.9 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) TMEMspv1-c74-12 PF11044.3 gi|20090957|ref|NP_617032.1| - 0.026 14.0 2.2 0.044 13.3 0.1 2.3 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein DUF2273 PF10031.4 gi|20090957|ref|NP_617032.1| - 0.026 14.1 0.4 0.026 14.1 0.3 3.5 4 0 0 4 4 4 0 Small integral membrane protein (DUF2273) DUF3953 PF13129.1 gi|20090957|ref|NP_617032.1| - 0.15 11.7 0.2 0.15 11.7 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3953) MacB_PCD PF12704.2 gi|20090958|ref|NP_617033.1| - 2e-09 37.3 0.0 2.7e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 MacB-like periplasmic core domain AAA_28 PF13521.1 gi|20090958|ref|NP_617033.1| - 0.0074 16.2 0.1 0.014 15.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain N6_Mtase PF02384.11 gi|20090959|ref|NP_617034.1| - 3e-69 233.4 0.0 4.4e-69 232.9 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|20090959|ref|NP_617034.1| - 5.6e-14 52.7 0.3 6.1e-13 49.3 0.0 2.7 2 1 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|20090959|ref|NP_617034.1| - 2.3e-10 40.5 0.0 4.6e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|20090959|ref|NP_617034.1| - 6.9e-05 22.4 0.0 0.0002 20.9 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|20090959|ref|NP_617034.1| - 0.00062 20.0 0.1 0.0034 17.7 0.0 2.2 2 0 0 2 2 2 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|20090959|ref|NP_617034.1| - 0.031 13.6 0.0 0.47 9.8 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase small domain Gly-zipper_OmpA PF13436.1 gi|20090960|ref|NP_617035.1| - 0.024 14.2 0.5 0.038 13.6 0.4 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain McrBC PF10117.4 gi|20090961|ref|NP_617036.1| - 6.6e-89 297.9 6.1 8.1e-89 297.7 4.3 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.9 gi|20090962|ref|NP_617037.1| - 8.9e-17 61.1 0.0 2.8e-15 56.2 0.0 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|20090962|ref|NP_617037.1| - 1.1e-06 28.8 0.4 1.6e-05 25.0 0.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|20090962|ref|NP_617037.1| - 0.00037 19.9 0.0 0.00085 18.7 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|20090962|ref|NP_617037.1| - 0.0017 17.7 0.0 0.0032 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20090962|ref|NP_617037.1| - 0.012 15.7 0.6 0.12 12.4 0.4 2.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|20090962|ref|NP_617037.1| - 0.083 12.8 0.0 0.76 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|20090962|ref|NP_617037.1| - 0.29 10.8 0.0 0.62 9.8 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain Methylase_S PF01420.14 gi|20090963|ref|NP_617038.1| - 2.1e-29 102.6 0.1 1.8e-18 67.0 0.2 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF4558 PF15104.1 gi|20090963|ref|NP_617038.1| - 0.18 11.7 3.8 1.5 8.8 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4558) HATPase_c_4 PF13749.1 gi|20090964|ref|NP_617039.1| - 9e-21 73.4 0.0 2.3e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|20090964|ref|NP_617039.1| - 1.1e-16 61.1 0.3 3.5e-16 59.4 0.2 1.9 1 0 0 1 1 1 1 Divergent AAA domain HTH_11 PF08279.7 gi|20090964|ref|NP_617039.1| - 3.7e-09 36.0 0.3 2.1e-08 33.6 0.1 2.4 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.1 gi|20090964|ref|NP_617039.1| - 2.8e-08 33.0 0.6 2.1e-07 30.1 0.3 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DDRGK PF09756.4 gi|20090964|ref|NP_617039.1| - 9.1e-07 28.4 1.7 3.8e-06 26.4 0.3 2.2 2 0 0 2 2 2 1 DDRGK domain HTH_DeoR PF08220.7 gi|20090964|ref|NP_617039.1| - 4.5e-05 22.8 0.0 0.00033 20.1 0.0 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|20090964|ref|NP_617039.1| - 0.00032 20.4 0.4 0.0016 18.1 0.2 2.2 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.1 gi|20090964|ref|NP_617039.1| - 0.0005 20.3 0.0 0.0034 17.6 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|20090964|ref|NP_617039.1| - 0.001 19.1 0.0 0.0024 17.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|20090964|ref|NP_617039.1| - 0.0011 19.0 0.1 0.0035 17.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|20090964|ref|NP_617039.1| - 0.0012 18.4 0.1 0.0031 17.1 0.1 1.6 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|20090964|ref|NP_617039.1| - 0.0016 18.0 0.2 0.014 15.0 0.0 2.4 3 0 0 3 3 2 1 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|20090964|ref|NP_617039.1| - 0.0047 16.7 0.0 0.016 14.9 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|20090964|ref|NP_617039.1| - 0.0048 16.5 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|20090964|ref|NP_617039.1| - 0.0093 15.7 0.0 0.028 14.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain EAP30 PF04157.11 gi|20090964|ref|NP_617039.1| - 0.0096 15.1 0.1 0.066 12.3 0.1 2.1 2 0 0 2 2 2 1 EAP30/Vps36 family FaeA PF04703.7 gi|20090964|ref|NP_617039.1| - 0.011 15.8 0.1 0.045 13.9 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein HTH_AsnC-type PF13404.1 gi|20090964|ref|NP_617039.1| - 0.011 15.1 0.0 0.051 13.1 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.12 gi|20090964|ref|NP_617039.1| - 0.013 14.9 0.0 0.042 13.3 0.0 1.9 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|20090964|ref|NP_617039.1| - 0.031 14.2 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|20090964|ref|NP_617039.1| - 0.053 13.2 0.0 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|20090964|ref|NP_617039.1| - 0.078 12.5 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF1627 PF07789.7 gi|20090964|ref|NP_617039.1| - 0.09 12.3 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1627) HTH_12 PF08461.5 gi|20090964|ref|NP_617039.1| - 0.092 12.4 0.0 0.34 10.6 0.0 2.0 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HATPase_c_2 PF13581.1 gi|20090964|ref|NP_617039.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain ResIII PF04851.10 gi|20090965|ref|NP_617040.1| - 1.3e-42 145.7 0.4 3e-41 141.2 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|20090965|ref|NP_617040.1| - 2.4e-39 134.8 0.8 1.3e-38 132.4 0.6 2.4 1 0 0 1 1 1 1 EcoEI R protein C-terminal HSDR_N PF04313.9 gi|20090965|ref|NP_617040.1| - 1e-09 38.4 2.6 3.7e-07 30.0 0.1 3.3 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.24 gi|20090965|ref|NP_617040.1| - 4.8e-09 35.9 0.0 2.5e-08 33.6 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|20090965|ref|NP_617040.1| - 0.00068 18.5 0.0 0.0025 16.6 0.0 1.9 2 0 0 2 2 2 1 SNF2 family N-terminal domain FtsK_SpoIIIE PF01580.13 gi|20090965|ref|NP_617040.1| - 0.024 14.0 0.0 0.065 12.7 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family TFIIH_BTF_p62_N PF08567.6 gi|20090965|ref|NP_617040.1| - 0.041 13.5 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 TFIIH p62 subunit, N-terminal domain AAA_19 PF13245.1 gi|20090965|ref|NP_617040.1| - 0.094 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Zot PF05707.7 gi|20090965|ref|NP_617040.1| - 0.098 12.1 1.6 3 7.2 0.3 2.9 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) DUF805 PF05656.9 gi|20090969|ref|NP_617044.1| - 0.058 13.2 0.4 0.058 13.2 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) GYF PF02213.11 gi|20090972|ref|NP_617047.1| - 0.015 14.8 0.6 0.026 14.0 0.4 1.4 1 0 0 1 1 1 0 GYF domain B3 PF02362.16 gi|20090972|ref|NP_617047.1| - 0.096 12.3 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 B3 DNA binding domain Lipocalin_4 PF13648.1 gi|20090972|ref|NP_617047.1| - 0.14 12.7 0.8 0.17 12.5 0.5 1.2 1 0 0 1 1 1 0 Lipocalin-like domain DUF86 PF01934.12 gi|20090973|ref|NP_617048.1| - 5.5e-23 80.8 0.0 6.4e-23 80.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|20090974|ref|NP_617049.1| - 3.4e-13 49.7 0.1 4.3e-13 49.4 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|20090974|ref|NP_617049.1| - 0.022 14.8 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm MdcG PF10620.4 gi|20090974|ref|NP_617049.1| - 0.03 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Osmo_CC PF08946.5 gi|20090975|ref|NP_617050.1| - 0.0027 17.6 1.9 0.0046 16.9 1.3 1.3 1 0 0 1 1 1 1 Osmosensory transporter coiled coil GnsAB PF08178.6 gi|20090975|ref|NP_617050.1| - 0.047 13.3 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 GnsA/GnsB family Staph_haemo PF05480.6 gi|20090975|ref|NP_617050.1| - 0.066 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Staphylococcus haemolytic protein Fic PF02661.13 gi|20090976|ref|NP_617051.1| - 1e-25 90.2 0.2 2.7e-25 88.8 0.0 1.8 2 0 0 2 2 2 1 Fic/DOC family UPF0150 PF03681.10 gi|20090977|ref|NP_617052.1| - 2.6e-11 42.9 1.5 3.9e-11 42.4 1.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|20090978|ref|NP_617053.1| - 8e-21 73.7 0.1 8.9e-21 73.5 0.0 1.0 1 0 0 1 1 1 1 YcfA-like protein phage_tail_N PF08400.5 gi|20090978|ref|NP_617053.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Prophage tail fibre N-terminal UPF0150 PF03681.10 gi|20090979|ref|NP_617054.1| - 2e-15 56.1 0.0 2.8e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Methyltransf_31 PF13847.1 gi|20090980|ref|NP_617055.1| - 1.8e-20 73.0 0.0 2.3e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090980|ref|NP_617055.1| - 6.5e-18 65.0 0.1 8.4e-18 64.6 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090980|ref|NP_617055.1| - 1.1e-16 61.3 0.1 1.9e-16 60.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090980|ref|NP_617055.1| - 2.1e-16 60.1 0.2 2.8e-16 59.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|20090980|ref|NP_617055.1| - 2.5e-14 53.2 0.0 3.6e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_25 PF13649.1 gi|20090980|ref|NP_617055.1| - 5.4e-13 49.1 0.1 7.5e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090980|ref|NP_617055.1| - 1.8e-12 47.3 0.0 2.2e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20090980|ref|NP_617055.1| - 2.9e-10 39.6 0.0 3.5e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|20090980|ref|NP_617055.1| - 9.3e-10 38.5 0.0 1.5e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090980|ref|NP_617055.1| - 1.5e-09 37.3 0.0 1.9e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|20090980|ref|NP_617055.1| - 1.3e-08 34.3 0.0 1.7e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|20090980|ref|NP_617055.1| - 1e-07 31.2 0.0 1.2e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|20090980|ref|NP_617055.1| - 1.5e-06 27.7 0.0 1.8e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|20090980|ref|NP_617055.1| - 3.9e-05 23.1 0.1 5e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.12 gi|20090980|ref|NP_617055.1| - 0.00012 21.2 0.2 0.0012 17.9 0.1 2.0 1 1 1 2 2 2 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|20090980|ref|NP_617055.1| - 0.00012 21.6 0.3 0.0002 20.9 0.2 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|20090980|ref|NP_617055.1| - 0.00026 20.2 0.0 0.00033 19.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.6 gi|20090980|ref|NP_617055.1| - 0.014 14.0 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|20090980|ref|NP_617055.1| - 0.034 13.8 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF768 PF05589.6 gi|20090980|ref|NP_617055.1| - 0.1 12.5 0.1 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF768) UPF0146 PF03686.8 gi|20090980|ref|NP_617055.1| - 0.1 12.3 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) PCMT PF01135.14 gi|20090980|ref|NP_617055.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AdoMet_MTase PF07757.8 gi|20090980|ref|NP_617055.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase AAA_15 PF13175.1 gi|20090982|ref|NP_617057.1| - 4.3e-35 121.5 22.3 4.3e-35 121.5 15.5 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|20090982|ref|NP_617057.1| - 3.1e-20 73.3 22.5 3.1e-20 73.3 15.6 2.6 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|20090982|ref|NP_617057.1| - 1.3e-14 54.9 13.3 3.3e-14 53.7 6.2 2.8 2 1 1 3 3 3 1 AAA domain DUF2813 PF11398.3 gi|20090982|ref|NP_617057.1| - 3.1e-12 46.2 0.8 4.7e-07 29.2 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|20090982|ref|NP_617057.1| - 2.7e-09 36.5 4.8 1.3e-08 34.3 0.7 2.9 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20090982|ref|NP_617057.1| - 0.0013 18.1 0.0 0.0029 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|20090982|ref|NP_617057.1| - 0.026 15.3 0.2 0.11 13.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|20090982|ref|NP_617057.1| - 0.051 13.8 0.2 0.18 12.0 0.0 2.0 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.1 gi|20090982|ref|NP_617057.1| - 0.071 13.4 2.4 0.31 11.3 0.2 3.2 2 2 1 3 3 3 0 AAA domain UvrD-helicase PF00580.16 gi|20090983|ref|NP_617058.1| - 1.8e-31 109.5 0.1 1.5e-29 103.3 0.1 2.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|20090983|ref|NP_617058.1| - 5.8e-11 42.4 0.8 2.7e-09 36.9 0.0 2.8 3 1 0 3 3 3 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|20090983|ref|NP_617058.1| - 1.2e-08 35.0 0.0 2.8e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|20090983|ref|NP_617058.1| - 3.2e-07 30.1 0.0 0.0031 17.0 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|20090983|ref|NP_617058.1| - 3.8e-05 23.3 0.0 8.4e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|20090983|ref|NP_617058.1| - 0.024 14.2 0.0 0.093 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|20090983|ref|NP_617058.1| - 0.078 12.1 0.3 0.61 9.2 0.0 2.5 2 1 0 2 2 2 0 PhoH-like protein ResIII PF04851.10 gi|20090983|ref|NP_617058.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Arginosuc_synth PF00764.14 gi|20090985|ref|NP_617060.1| - 1.9e-181 603.3 0.1 2.2e-181 603.0 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|20090985|ref|NP_617060.1| - 4.8e-06 26.2 0.0 8.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|20090985|ref|NP_617060.1| - 0.00043 19.6 0.1 0.0018 17.6 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|20090985|ref|NP_617060.1| - 0.0014 17.5 0.0 0.0033 16.3 0.0 1.7 1 1 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|20090985|ref|NP_617060.1| - 0.024 13.1 0.0 0.038 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase CPSase_L_D2 PF02786.12 gi|20090986|ref|NP_617061.1| - 5e-105 349.4 1.0 1e-70 237.3 0.2 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|20090986|ref|NP_617061.1| - 4.4e-48 161.9 0.2 1.6e-23 82.8 0.0 3.3 4 0 0 4 4 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|20090986|ref|NP_617061.1| - 6.4e-46 155.1 0.2 1.7e-45 153.7 0.1 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|20090986|ref|NP_617061.1| - 1.7e-36 125.6 0.2 7.7e-18 64.8 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20090986|ref|NP_617061.1| - 2e-26 92.5 0.0 1.4e-12 47.0 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|20090986|ref|NP_617061.1| - 1.5e-22 79.2 0.3 2.7e-20 72.0 0.0 3.8 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|20090986|ref|NP_617061.1| - 1.8e-15 56.7 0.1 1.2e-06 28.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|20090986|ref|NP_617061.1| - 2.5e-14 53.1 0.0 7.9e-06 25.3 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|20090986|ref|NP_617061.1| - 6.9e-09 35.7 0.5 0.00049 20.0 0.1 2.7 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|20090986|ref|NP_617061.1| - 1.4e-07 31.2 0.1 0.009 15.5 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|20090986|ref|NP_617061.1| - 0.0011 18.2 0.0 0.15 11.2 0.0 3.1 2 0 0 2 2 2 1 ATP-grasp domain B12-binding PF02310.14 gi|20090986|ref|NP_617061.1| - 0.0058 16.4 0.0 0.56 10.0 0.0 2.8 2 0 0 2 2 2 1 B12 binding domain ATP-grasp_2 PF08442.5 gi|20090986|ref|NP_617061.1| - 0.014 14.7 0.0 7.2 5.9 0.0 3.2 4 0 0 4 4 4 0 ATP-grasp domain Hydrolase PF00702.21 gi|20090986|ref|NP_617061.1| - 0.042 14.2 0.0 18 5.6 0.0 3.6 4 0 0 4 4 4 0 haloacid dehalogenase-like hydrolase Rrf2 PF02082.15 gi|20090986|ref|NP_617061.1| - 0.045 13.8 0.1 12 6.1 0.0 3.4 3 0 0 3 3 3 0 Transcriptional regulator HTH_23 PF13384.1 gi|20090986|ref|NP_617061.1| - 0.053 13.1 0.0 3.8 7.3 0.0 3.1 1 1 1 2 2 2 0 Homeodomain-like domain Hydrolase_6 PF13344.1 gi|20090986|ref|NP_617061.1| - 0.1 12.4 0.3 4.1 7.3 0.0 3.9 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase CPSase_sm_chain PF00988.17 gi|20090987|ref|NP_617062.1| - 2.5e-51 172.5 0.0 3.8e-51 171.9 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|20090987|ref|NP_617062.1| - 9e-41 139.4 0.0 1.4e-40 138.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|20090987|ref|NP_617062.1| - 7.4e-07 28.8 0.1 0.00023 20.6 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 ABC_tran PF00005.22 gi|20090988|ref|NP_617063.1| - 3.5e-33 114.7 0.0 6.2e-33 114.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter CBS PF00571.23 gi|20090988|ref|NP_617063.1| - 8.8e-14 51.0 0.3 1.6e-05 24.6 0.0 2.7 3 0 0 3 3 3 2 CBS domain AAA_21 PF13304.1 gi|20090988|ref|NP_617063.1| - 4.4e-09 36.7 0.2 0.00034 20.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain ABC_ATPase PF09818.4 gi|20090988|ref|NP_617063.1| - 4.5e-05 22.2 0.9 0.18 10.3 0.0 2.9 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|20090988|ref|NP_617063.1| - 8.3e-05 22.6 0.1 0.00017 21.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|20090988|ref|NP_617063.1| - 0.00052 19.2 0.1 0.00083 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|20090988|ref|NP_617063.1| - 0.00089 19.4 0.2 0.0037 17.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20090988|ref|NP_617063.1| - 0.0011 18.4 0.0 0.0028 17.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20090988|ref|NP_617063.1| - 0.0025 18.1 0.1 0.0048 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20090988|ref|NP_617063.1| - 0.014 14.4 0.1 1.6 7.7 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|20090988|ref|NP_617063.1| - 0.039 14.2 0.2 0.27 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|20090988|ref|NP_617063.1| - 0.043 13.3 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20090988|ref|NP_617063.1| - 0.079 12.3 0.1 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|20090988|ref|NP_617063.1| - 0.092 12.6 0.8 0.38 10.6 0.5 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|20090988|ref|NP_617063.1| - 0.092 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|20090988|ref|NP_617063.1| - 0.16 12.7 0.3 0.45 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|20090988|ref|NP_617063.1| - 0.17 10.5 0.0 0.25 9.9 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.17 gi|20090989|ref|NP_617064.1| - 9.7e-27 93.6 7.8 9.7e-27 93.6 5.4 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OpuAC PF04069.7 gi|20090990|ref|NP_617065.1| - 9.8e-69 231.5 2.3 1.1e-68 231.3 1.6 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1 PF09084.6 gi|20090990|ref|NP_617065.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 NMT1/THI5 like Peripla_BP_2 PF01497.13 gi|20090991|ref|NP_617066.1| - 2.5e-39 134.8 0.0 3e-39 134.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.1 gi|20090991|ref|NP_617066.1| - 0.00073 18.9 0.0 0.0021 17.4 0.0 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain FecCD PF01032.13 gi|20090992|ref|NP_617067.1| - 1.2e-89 300.2 34.8 1.5e-89 299.8 24.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20090992|ref|NP_617067.1| - 1.7e-08 34.0 19.2 1.7e-08 34.0 13.3 1.7 1 1 0 1 1 1 1 ABC 3 transport family Peptidase_U4 PF03419.8 gi|20090992|ref|NP_617067.1| - 0.28 10.2 6.8 0.73 8.8 4.7 1.6 1 0 0 1 1 1 0 Sporulation factor SpoIIGA ABC_tran PF00005.22 gi|20090993|ref|NP_617068.1| - 1.3e-29 103.2 0.3 2.2e-29 102.5 0.1 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|20090993|ref|NP_617068.1| - 1.2e-16 61.5 1.4 1.2e-07 32.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20090993|ref|NP_617068.1| - 1.1e-10 41.1 0.4 6.6e-05 22.1 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|20090993|ref|NP_617068.1| - 3.6e-08 33.9 0.0 4.4e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20090993|ref|NP_617068.1| - 2.4e-07 30.1 0.8 5.7e-06 25.7 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|20090993|ref|NP_617068.1| - 0.00025 19.7 0.4 0.042 12.4 0.0 3.0 2 2 1 3 3 3 1 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|20090993|ref|NP_617068.1| - 0.0006 19.2 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MutS_V PF00488.16 gi|20090993|ref|NP_617068.1| - 0.0049 16.3 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 MutS domain V AAA_16 PF13191.1 gi|20090993|ref|NP_617068.1| - 0.006 16.5 0.0 0.0096 15.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|20090993|ref|NP_617068.1| - 0.0067 16.5 0.1 0.018 15.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|20090993|ref|NP_617068.1| - 0.015 14.9 0.1 0.03 14.0 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|20090993|ref|NP_617068.1| - 0.018 14.9 0.1 0.18 11.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|20090993|ref|NP_617068.1| - 0.022 14.6 0.1 0.38 10.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.10 gi|20090993|ref|NP_617068.1| - 0.044 12.4 0.0 0.09 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein Zeta_toxin PF06414.7 gi|20090993|ref|NP_617068.1| - 0.045 12.8 0.0 0.095 11.7 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_10 PF12846.2 gi|20090993|ref|NP_617068.1| - 0.069 12.5 0.1 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|20090993|ref|NP_617068.1| - 0.087 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Methyltransf_11 PF08241.7 gi|20090994|ref|NP_617069.1| - 3.6e-26 91.4 0.0 5.4e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090994|ref|NP_617069.1| - 1e-22 80.3 0.0 1.5e-22 79.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090994|ref|NP_617069.1| - 1.8e-22 79.6 0.0 2.4e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|20090994|ref|NP_617069.1| - 5.1e-19 68.9 0.0 7.9e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090994|ref|NP_617069.1| - 5.6e-16 58.6 0.0 8.4e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090994|ref|NP_617069.1| - 3.5e-15 56.2 0.0 5.3e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090994|ref|NP_617069.1| - 5.8e-15 55.4 0.0 9.5e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090994|ref|NP_617069.1| - 2.8e-11 43.4 0.0 7.4e-11 42.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090994|ref|NP_617069.1| - 7.2e-07 28.7 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|20090994|ref|NP_617069.1| - 4e-06 26.1 0.0 6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|20090994|ref|NP_617069.1| - 9.8e-06 25.0 0.0 1.4e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|20090994|ref|NP_617069.1| - 8.1e-05 22.0 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|20090994|ref|NP_617069.1| - 0.00012 21.1 0.0 0.00019 20.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|20090994|ref|NP_617069.1| - 0.002 17.2 0.0 0.006 15.7 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G PrmA PF06325.8 gi|20090994|ref|NP_617069.1| - 0.0043 16.2 0.0 0.0062 15.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|20090994|ref|NP_617069.1| - 0.0052 15.7 0.0 0.0081 15.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_16 PF10294.4 gi|20090994|ref|NP_617069.1| - 0.012 15.0 0.0 0.032 13.6 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase PCMT PF01135.14 gi|20090994|ref|NP_617069.1| - 0.015 14.8 0.0 0.031 13.7 0.0 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|20090994|ref|NP_617069.1| - 0.093 12.4 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Mur_ligase PF01225.20 gi|20090994|ref|NP_617069.1| - 0.099 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_11 PF08241.7 gi|20090995|ref|NP_617070.1| - 2.9e-26 91.7 0.0 5.6e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20090995|ref|NP_617070.1| - 1.8e-24 86.0 0.0 2.7e-24 85.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090995|ref|NP_617070.1| - 1.4e-21 76.8 0.0 2.3e-21 76.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090995|ref|NP_617070.1| - 5.1e-18 65.6 0.0 1.6e-17 64.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20090995|ref|NP_617070.1| - 1.6e-16 60.5 0.0 3.3e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090995|ref|NP_617070.1| - 5e-16 58.5 0.0 7.5e-16 57.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20090995|ref|NP_617070.1| - 5.5e-14 52.3 0.0 1.1e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20090995|ref|NP_617070.1| - 2.2e-13 50.2 0.0 9.5e-13 48.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|20090995|ref|NP_617070.1| - 2e-07 30.5 0.0 4e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|20090995|ref|NP_617070.1| - 2.9e-07 30.0 0.0 4.4e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|20090995|ref|NP_617070.1| - 4.5e-07 28.8 0.0 7.3e-06 24.9 0.0 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1698) DREV PF05219.7 gi|20090995|ref|NP_617070.1| - 2.8e-05 23.1 0.0 4.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|20090995|ref|NP_617070.1| - 3.2e-05 23.4 0.0 4.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|20090995|ref|NP_617070.1| - 6.3e-05 22.1 0.0 0.0001 21.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|20090995|ref|NP_617070.1| - 0.0001 21.5 0.0 0.0002 20.5 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|20090995|ref|NP_617070.1| - 0.00028 20.5 0.0 0.00051 19.6 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|20090995|ref|NP_617070.1| - 0.00034 20.2 0.0 0.00068 19.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|20090995|ref|NP_617070.1| - 0.00053 19.4 0.0 0.0027 17.1 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|20090995|ref|NP_617070.1| - 0.001 18.2 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB AdoMet_MTase PF07757.8 gi|20090995|ref|NP_617070.1| - 0.002 18.2 0.0 0.0039 17.2 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Methyltransf_2 PF00891.13 gi|20090995|ref|NP_617070.1| - 0.0026 17.0 0.0 0.0031 16.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CheR PF01739.13 gi|20090995|ref|NP_617070.1| - 0.003 16.8 0.0 0.67 9.1 0.0 2.5 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain N2227 PF07942.7 gi|20090995|ref|NP_617070.1| - 0.0057 15.6 0.0 0.12 11.2 0.0 2.4 1 1 1 2 2 2 1 N2227-like protein FtsJ PF01728.14 gi|20090995|ref|NP_617070.1| - 0.0077 16.2 0.0 0.014 15.4 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.8 gi|20090995|ref|NP_617070.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|20090995|ref|NP_617070.1| - 0.027 14.0 0.0 0.056 13.0 0.0 1.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|20090995|ref|NP_617070.1| - 0.073 12.5 0.1 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 DNA methylase GidB PF02527.10 gi|20090995|ref|NP_617070.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Peripla_BP_2 PF01497.13 gi|20090996|ref|NP_617071.1| - 1.5e-37 129.0 0.0 2e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.1 gi|20090996|ref|NP_617071.1| - 0.008 15.5 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain ABC2_membrane_3 PF12698.2 gi|20090996|ref|NP_617071.1| - 0.06 12.3 0.0 0.081 11.9 0.0 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF3917 PF13055.1 gi|20090996|ref|NP_617071.1| - 0.087 13.0 0.3 0.15 12.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) Methyltransf_31 PF13847.1 gi|20090998|ref|NP_617073.1| - 9.2e-22 77.2 0.0 1.3e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20090998|ref|NP_617073.1| - 4.2e-21 75.2 0.0 7.6e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20090998|ref|NP_617073.1| - 5.2e-16 58.7 0.0 7.5e-16 58.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20090998|ref|NP_617073.1| - 7.2e-15 55.5 0.0 1.3e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20090998|ref|NP_617073.1| - 7.3e-15 54.7 0.0 1e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20090998|ref|NP_617073.1| - 2e-12 47.1 0.0 1.2e-11 44.7 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20090998|ref|NP_617073.1| - 1.7e-11 44.3 0.0 3.1e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20090998|ref|NP_617073.1| - 2.3e-09 36.8 0.0 6.9e-09 35.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|20090998|ref|NP_617073.1| - 5.3e-09 36.4 0.0 9.6e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20090998|ref|NP_617073.1| - 7.5e-09 35.4 0.0 1.4e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|20090998|ref|NP_617073.1| - 5.7e-06 25.5 0.0 8e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|20090998|ref|NP_617073.1| - 4.5e-05 22.9 0.0 7.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|20090998|ref|NP_617073.1| - 0.00055 18.7 0.0 0.00077 18.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.8 gi|20090998|ref|NP_617073.1| - 0.00079 18.6 0.0 0.001 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|20090998|ref|NP_617073.1| - 0.0011 18.7 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|20090998|ref|NP_617073.1| - 0.0019 17.6 0.0 0.004 16.6 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|20090998|ref|NP_617073.1| - 0.0024 17.0 0.0 0.0031 16.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|20090998|ref|NP_617073.1| - 0.0031 17.0 0.0 0.011 15.3 0.0 1.7 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase SAM_MT PF04445.8 gi|20090998|ref|NP_617073.1| - 0.0054 15.9 0.0 0.0079 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase NodS PF05401.6 gi|20090998|ref|NP_617073.1| - 0.0077 15.6 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) N2227 PF07942.7 gi|20090998|ref|NP_617073.1| - 0.0086 15.0 0.1 0.032 13.1 0.0 1.7 1 1 1 2 2 2 1 N2227-like protein UPF0020 PF01170.13 gi|20090998|ref|NP_617073.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Peripla_BP_2 PF01497.13 gi|20090999|ref|NP_617074.1| - 3.8e-21 75.3 0.0 5.2e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF1995 PF09353.5 gi|20090999|ref|NP_617074.1| - 0.011 15.4 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) DUF2683 PF10884.3 gi|20091001|ref|NP_617076.1| - 3.3e-38 129.4 2.5 3.7e-38 129.3 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2683) CM_2 PF01817.16 gi|20091001|ref|NP_617076.1| - 0.072 13.1 1.7 0.097 12.7 1.2 1.1 1 0 0 1 1 1 0 Chorismate mutase type II DUF520 PF04461.8 gi|20091001|ref|NP_617076.1| - 0.091 12.6 0.1 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF520) Ribosomal_L29 PF00831.18 gi|20091002|ref|NP_617077.1| - 0.0031 17.1 0.2 0.0051 16.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L29 protein Plasmid_stabil PF05016.9 gi|20091002|ref|NP_617077.1| - 0.039 14.3 0.2 0.044 14.1 0.2 1.1 1 0 0 1 1 1 0 Plasmid stabilisation system protein DDE_Tnp_IS1 PF03400.8 gi|20091003|ref|NP_617078.1| - 1.7e-12 47.5 0.3 1.9e-12 47.4 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20091004|ref|NP_617079.1| - 9.3e-07 28.3 0.0 1.8e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20091004|ref|NP_617079.1| - 6.9e-06 25.5 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20091004|ref|NP_617079.1| - 1e-05 25.4 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091004|ref|NP_617079.1| - 0.00074 19.6 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20091004|ref|NP_617079.1| - 0.0032 16.9 0.1 0.022 14.3 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091004|ref|NP_617079.1| - 0.0062 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Zn_Tnp_IS1 PF03811.8 gi|20091004|ref|NP_617079.1| - 0.0063 15.9 8.8 0.011 15.2 6.1 1.4 1 0 0 1 1 1 1 InsA N-terminal domain zf-Mss51 PF13824.1 gi|20091004|ref|NP_617079.1| - 0.021 14.6 2.8 0.044 13.6 1.9 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_Tnp_1 PF01527.15 gi|20091004|ref|NP_617079.1| - 0.041 13.8 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Transposase Zn_Tnp_IS1595 PF12760.2 gi|20091004|ref|NP_617079.1| - 0.042 13.6 6.9 0.065 13.0 4.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|20091004|ref|NP_617079.1| - 0.057 13.3 0.7 0.11 12.4 0.5 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|20091004|ref|NP_617079.1| - 0.094 12.6 2.2 1.5 8.8 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20091004|ref|NP_617079.1| - 0.14 12.0 1.9 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20091004|ref|NP_617079.1| - 1 8.4 4.8 2 7.5 2.4 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|20091004|ref|NP_617079.1| - 3.6 7.3 6.5 6.5 6.4 2.9 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain URO-D PF01208.12 gi|20091005|ref|NP_617080.1| - 3.6e-74 249.7 0.0 4.1e-74 249.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Isochorismatase PF00857.15 gi|20091005|ref|NP_617080.1| - 0.041 13.8 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Isochorismatase family Methyltransf_23 PF13489.1 gi|20091006|ref|NP_617081.1| - 9.1e-14 51.4 0.0 1.7e-13 50.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091006|ref|NP_617081.1| - 3.6e-07 30.5 0.1 7.6e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091006|ref|NP_617081.1| - 9.7e-05 22.0 0.1 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091006|ref|NP_617081.1| - 0.00014 22.4 0.0 0.00024 21.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20091006|ref|NP_617081.1| - 0.00046 19.5 0.0 0.00079 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|20091006|ref|NP_617081.1| - 0.0024 18.3 0.0 0.0054 17.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|20091006|ref|NP_617081.1| - 0.0069 16.3 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.1 gi|20091006|ref|NP_617081.1| - 0.0099 16.2 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20091006|ref|NP_617081.1| - 0.015 14.4 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB PH_BEACH PF14844.1 gi|20091007|ref|NP_617082.1| - 0.025 14.4 0.4 0.032 14.0 0.3 1.3 1 0 0 1 1 1 0 PH domain associated with Beige/BEACH URO-D PF01208.12 gi|20091008|ref|NP_617083.1| - 8.6e-11 41.3 0.0 8.8e-11 41.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) FMN_red PF03358.10 gi|20091009|ref|NP_617084.1| - 5.2e-21 74.7 0.0 6.6e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20091009|ref|NP_617084.1| - 8.3e-10 38.5 0.0 1.2e-09 37.9 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Glycos_transf_2 PF00535.21 gi|20091011|ref|NP_617086.1| - 9e-22 77.5 0.0 1.3e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20091011|ref|NP_617086.1| - 8.6e-10 38.7 0.0 1.2e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20091011|ref|NP_617086.1| - 0.023 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF373 PF04123.8 gi|20091011|ref|NP_617086.1| - 2.9 6.8 7.2 1.5 7.7 1.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Glycos_transf_2 PF00535.21 gi|20091012|ref|NP_617087.1| - 6.3e-31 107.3 0.3 9.9e-31 106.6 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20091012|ref|NP_617087.1| - 5e-24 85.3 0.0 7.2e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|20091012|ref|NP_617087.1| - 3.9e-12 45.8 0.6 5.7e-12 45.2 0.1 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|20091012|ref|NP_617087.1| - 4.8e-09 35.7 0.1 8.4e-08 31.7 0.0 2.5 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|20091012|ref|NP_617087.1| - 9.8e-08 31.9 0.0 1.4e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|20091012|ref|NP_617087.1| - 5.9e-05 22.4 0.0 9e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|20091012|ref|NP_617087.1| - 6.8e-05 22.2 0.0 0.00014 21.2 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Alg14 PF08660.6 gi|20091013|ref|NP_617088.1| - 4.3e-32 111.4 0.3 5.8e-30 104.5 0.2 2.0 1 1 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_transf_28 PF03033.15 gi|20091013|ref|NP_617088.1| - 0.0001 22.0 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_3 PF13528.1 gi|20091013|ref|NP_617088.1| - 0.0065 15.7 0.0 0.019 14.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|20091014|ref|NP_617089.1| - 1.9e-26 92.6 0.2 2.4e-26 92.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain YfkB PF08756.5 gi|20091014|ref|NP_617089.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.4 1 1 0 1 1 1 0 YfkB-like domain Alpha-amyl_C2 PF07821.7 gi|20091014|ref|NP_617089.1| - 0.031 14.1 0.0 0.066 13.0 0.0 1.5 1 1 0 1 1 1 0 Alpha-amylase C-terminal beta-sheet domain Glycos_transf_1 PF00534.15 gi|20091015|ref|NP_617090.1| - 2.2e-42 144.3 0.0 4.6e-42 143.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20091015|ref|NP_617090.1| - 5.2e-21 75.2 0.0 8.6e-19 68.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20091015|ref|NP_617090.1| - 2.5e-20 72.9 0.0 3.5e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|20091015|ref|NP_617090.1| - 5.8e-15 55.7 0.0 8.2e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|20091015|ref|NP_617090.1| - 5.4e-09 36.2 0.0 1.5e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20091015|ref|NP_617090.1| - 2.6e-07 30.5 2.8 4.8e-07 29.6 1.4 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|20091015|ref|NP_617090.1| - 0.0088 15.5 0.0 1.9 7.8 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Hexapep PF00132.19 gi|20091016|ref|NP_617091.1| - 7.1e-14 50.5 19.8 1.5e-11 43.2 3.6 3.9 4 1 1 5 5 5 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20091016|ref|NP_617091.1| - 9.5e-11 41.0 17.8 3.8e-10 39.1 2.9 3.6 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase Glycos_transf_1 PF00534.15 gi|20091017|ref|NP_617092.1| - 1.8e-21 76.3 0.1 2.8e-21 75.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20091017|ref|NP_617092.1| - 1.5e-14 54.2 0.0 2.9e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20091017|ref|NP_617092.1| - 6e-07 29.6 0.0 1.2e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20091017|ref|NP_617092.1| - 0.0014 18.3 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|20091017|ref|NP_617092.1| - 0.0078 16.0 2.7 0.014 15.2 0.2 2.2 1 1 0 2 2 2 1 Glycosyl transferase 4-like Thymidylate_kin PF02223.12 gi|20091018|ref|NP_617093.1| - 4.8e-05 22.8 2.2 0.00043 19.7 0.0 2.4 2 1 0 2 2 2 1 Thymidylate kinase NTPase_1 PF03266.10 gi|20091018|ref|NP_617093.1| - 0.0018 18.0 0.1 0.0038 16.9 0.1 1.5 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.1 gi|20091018|ref|NP_617093.1| - 0.0081 16.4 0.6 0.048 13.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20091018|ref|NP_617093.1| - 0.012 16.4 0.5 0.043 14.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|20091018|ref|NP_617093.1| - 0.026 14.2 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|20091018|ref|NP_617093.1| - 0.054 13.4 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|20091018|ref|NP_617093.1| - 0.074 12.9 0.9 0.32 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|20091018|ref|NP_617093.1| - 0.075 12.5 0.9 2.3 7.6 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|20091018|ref|NP_617093.1| - 0.093 12.3 0.1 0.15 11.6 0.0 1.7 1 1 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|20091018|ref|NP_617093.1| - 0.1 11.3 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein NTP_transf_2 PF01909.18 gi|20091019|ref|NP_617094.1| - 0.018 15.3 0.0 0.035 14.4 0.0 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase domain DUF1430 PF07242.6 gi|20091019|ref|NP_617094.1| - 0.66 10.0 10.9 0.084 12.9 4.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1430) Glycos_transf_1 PF00534.15 gi|20091020|ref|NP_617095.1| - 2.6e-32 111.5 0.1 4.6e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20091020|ref|NP_617095.1| - 1.1e-11 45.0 0.0 1.7e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20091020|ref|NP_617095.1| - 4.4e-09 36.4 0.0 9.7e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20091020|ref|NP_617095.1| - 1.3e-08 34.7 0.3 3e-08 33.5 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|20091020|ref|NP_617095.1| - 4.1e-06 26.6 0.0 1.2e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|20091020|ref|NP_617095.1| - 0.00076 19.6 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_20 PF00982.16 gi|20091020|ref|NP_617095.1| - 0.0059 15.1 0.1 0.13 10.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 20 Mito_fiss_Elm1 PF06258.6 gi|20091020|ref|NP_617095.1| - 0.043 12.7 0.0 0.071 12.0 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial fission ELM1 NfeD PF01957.13 gi|20091021|ref|NP_617096.1| - 0.068 13.2 0.4 0.068 13.2 0.3 4.2 5 0 0 5 5 5 0 NfeD-like C-terminal, partner-binding Polysacc_synt PF01943.12 gi|20091022|ref|NP_617097.1| - 6.5e-39 133.8 31.5 6.5e-39 133.8 21.8 2.8 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|20091022|ref|NP_617097.1| - 2e-23 82.7 55.5 1.4e-18 67.1 15.1 3.9 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|20091022|ref|NP_617097.1| - 1.7e-18 67.0 22.3 1.7e-18 67.0 15.4 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|20091022|ref|NP_617097.1| - 3.3e-12 46.3 29.6 3.9e-09 36.3 6.6 4.0 4 0 0 4 4 4 2 MatE MVIN PF03023.9 gi|20091022|ref|NP_617097.1| - 5e-12 44.9 39.2 5e-12 44.9 27.2 1.6 1 1 0 1 1 1 1 MviN-like protein Glyco_trans_4_2 PF13477.1 gi|20091023|ref|NP_617098.1| - 2e-05 24.4 4.6 0.00049 19.9 0.9 2.4 2 1 0 2 2 2 2 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|20091023|ref|NP_617098.1| - 5.4e-05 22.6 0.0 0.00062 19.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20091023|ref|NP_617098.1| - 0.053 13.7 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Acyl_transf_3 PF01757.17 gi|20091024|ref|NP_617099.1| - 4.1e-30 104.7 40.3 4.7e-30 104.5 27.9 1.0 1 0 0 1 1 1 1 Acyltransferase family NTP_transferase PF00483.18 gi|20091025|ref|NP_617100.1| - 2.9e-55 187.2 0.0 3.3e-55 187.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|20091025|ref|NP_617100.1| - 8.7e-12 45.4 0.0 9.5e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|20091025|ref|NP_617100.1| - 0.02 14.5 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Acyl_transf_3 PF01757.17 gi|20091026|ref|NP_617101.1| - 1.7e-07 30.4 36.5 1.2e-05 24.3 25.3 2.1 1 1 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.7 gi|20091026|ref|NP_617101.1| - 1.2e-06 28.0 24.9 1.4e-06 27.7 13.6 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1624) OpgC_C PF10129.4 gi|20091026|ref|NP_617101.1| - 2e-05 23.4 1.7 2e-05 23.4 1.2 2.6 1 1 1 2 2 2 2 OpgC protein DUF418 PF04235.7 gi|20091026|ref|NP_617101.1| - 0.0001 22.0 0.6 0.0001 22.0 0.4 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF418) Epimerase PF01370.16 gi|20091027|ref|NP_617102.1| - 3e-68 229.7 0.0 4.1e-68 229.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|20091027|ref|NP_617102.1| - 8.3e-25 87.0 0.0 1.1e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|20091027|ref|NP_617102.1| - 1e-24 87.0 0.0 3.6e-24 85.1 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|20091027|ref|NP_617102.1| - 3.4e-20 72.0 0.0 3.2e-19 68.8 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|20091027|ref|NP_617102.1| - 1.1e-17 63.8 0.0 1.4e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|20091027|ref|NP_617102.1| - 3e-06 27.3 0.0 5.4e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|20091027|ref|NP_617102.1| - 0.00046 19.5 0.0 0.00069 18.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|20091027|ref|NP_617102.1| - 0.005 16.7 0.0 0.011 15.6 0.0 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|20091027|ref|NP_617102.1| - 0.033 13.8 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 KR domain rve_3 PF13683.1 gi|20091028|ref|NP_617103.1| - 2.9e-07 29.8 0.1 9.2e-06 25.0 0.1 2.2 1 1 0 1 1 1 1 Integrase core domain rve PF00665.21 gi|20091028|ref|NP_617103.1| - 1.4e-06 28.4 0.1 2.9e-06 27.3 0.0 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_29 PF13551.1 gi|20091030|ref|NP_617105.1| - 3.2e-05 24.0 0.0 6.9e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20091030|ref|NP_617105.1| - 5.9e-05 22.5 0.2 0.00013 21.5 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain rve PF00665.21 gi|20091030|ref|NP_617105.1| - 0.0017 18.4 0.0 0.0037 17.3 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_28 PF13518.1 gi|20091030|ref|NP_617105.1| - 0.017 15.1 0.2 0.034 14.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20091030|ref|NP_617105.1| - 0.078 12.5 0.4 0.17 11.4 0.0 1.6 2 0 0 2 2 2 0 Lsm C-terminal HTH_Tnp_ISL3 PF13542.1 gi|20091030|ref|NP_617105.1| - 0.1 11.8 0.0 0.21 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 URO-D PF01208.12 gi|20091031|ref|NP_617106.1| - 2.9e-08 33.0 0.0 3.1e-08 32.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) FMN_red PF03358.10 gi|20091032|ref|NP_617107.1| - 4.3e-20 71.7 0.0 5.4e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20091032|ref|NP_617107.1| - 1.5e-08 34.4 0.0 4.9e-08 32.7 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin-like fold TPR_1 PF00515.23 gi|20091034|ref|NP_617109.1| - 6.6e-49 161.6 0.1 2.8e-09 36.1 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20091034|ref|NP_617109.1| - 1.3e-43 146.4 0.5 7e-16 57.6 0.0 4.5 3 2 1 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|20091034|ref|NP_617109.1| - 4.3e-41 135.5 0.2 4.5e-07 29.2 0.1 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20091034|ref|NP_617109.1| - 2.2e-28 95.8 4.4 2.7e-05 23.5 0.0 7.0 5 2 2 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20091034|ref|NP_617109.1| - 3.9e-24 84.7 0.0 3.4e-09 37.1 0.0 4.8 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20091034|ref|NP_617109.1| - 1.1e-22 78.3 0.0 0.0087 16.6 0.0 6.2 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20091034|ref|NP_617109.1| - 1.3e-22 79.9 1.3 3.6e-07 30.4 0.0 4.6 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20091034|ref|NP_617109.1| - 1.6e-22 79.2 0.6 5.7e-06 26.1 0.0 5.6 2 2 2 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20091034|ref|NP_617109.1| - 2.3e-20 72.2 0.0 1.3e-11 44.2 0.0 4.3 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20091034|ref|NP_617109.1| - 8e-20 69.3 0.2 0.0048 17.0 0.0 7.5 8 1 1 9 9 8 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20091034|ref|NP_617109.1| - 2.9e-19 67.2 0.0 0.02 14.6 0.0 6.3 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20091034|ref|NP_617109.1| - 3.8e-15 55.2 0.8 0.01 16.2 0.0 5.8 6 0 0 6 6 5 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|20091034|ref|NP_617109.1| - 8.4e-14 51.4 0.1 0.023 14.7 0.0 4.2 4 0 0 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|20091034|ref|NP_617109.1| - 4.3e-13 48.7 0.3 0.018 14.9 0.0 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|20091034|ref|NP_617109.1| - 7e-08 31.6 0.0 0.00029 19.7 0.0 3.6 3 1 1 4 4 4 1 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|20091034|ref|NP_617109.1| - 7.7e-08 32.1 2.9 0.013 15.3 0.0 5.3 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|20091034|ref|NP_617109.1| - 2.3e-07 30.1 0.0 0.045 12.8 0.0 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat RPN7 PF10602.4 gi|20091034|ref|NP_617109.1| - 1.3e-06 27.9 0.9 0.57 9.5 0.1 4.4 3 2 2 5 5 5 2 26S proteasome subunit RPN7 TPR_21 PF09976.4 gi|20091034|ref|NP_617109.1| - 2.9e-06 27.2 0.8 0.47 10.3 0.0 3.7 4 0 0 4 4 3 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20091034|ref|NP_617109.1| - 4e-06 26.7 1.8 0.014 15.2 1.0 4.0 2 1 0 3 3 3 1 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|20091034|ref|NP_617109.1| - 0.00013 21.8 8.5 1.7 8.5 0.0 5.6 5 1 1 6 6 6 1 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|20091034|ref|NP_617109.1| - 0.00065 19.4 3.3 0.073 12.8 0.1 3.8 5 0 0 5 5 5 1 Tetratricopeptide repeat BTAD PF03704.12 gi|20091034|ref|NP_617109.1| - 0.0017 18.6 0.1 0.29 11.4 0.0 3.4 3 1 0 4 4 4 1 Bacterial transcriptional activator domain Rapsyn_N PF10579.4 gi|20091034|ref|NP_617109.1| - 0.0036 17.0 0.0 14 5.5 0.0 4.0 4 0 0 4 4 4 0 Rapsyn N-terminal myristoylation and linker region PPR PF01535.15 gi|20091034|ref|NP_617109.1| - 0.0059 16.5 14.5 0.99 9.5 0.1 5.4 6 0 0 6 6 5 2 PPR repeat TPR_4 PF07721.9 gi|20091034|ref|NP_617109.1| - 0.0073 16.6 0.0 10 6.9 0.0 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|20091034|ref|NP_617109.1| - 0.009 15.2 0.2 6.3 5.9 0.0 3.5 2 1 2 4 4 4 0 Coatomer epsilon subunit Peptidase_S68 PF10461.4 gi|20091034|ref|NP_617109.1| - 0.15 11.8 0.1 0.32 10.7 0.1 1.5 1 0 0 1 1 1 0 Peptidase S68 Peptidase_M50 PF02163.17 gi|20091035|ref|NP_617110.1| - 2.8e-05 23.1 4.7 0.0013 17.7 3.2 2.7 1 1 0 1 1 1 1 Peptidase family M50 Peptidase_M50B PF13398.1 gi|20091035|ref|NP_617110.1| - 2.1 7.6 21.1 0.17 11.2 5.0 3.1 1 1 1 2 2 2 0 Peptidase M50B-like DUF457 PF04307.9 gi|20091037|ref|NP_617112.1| - 9e-14 51.0 2.9 1.1e-13 50.7 2.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|20091037|ref|NP_617112.1| - 8.2e-05 22.3 0.1 0.0001 22.0 0.0 1.0 1 0 0 1 1 1 1 Zinc dependent phospholipase C Pyridox_ox_2 PF12900.2 gi|20091038|ref|NP_617113.1| - 2.1e-26 92.4 0.0 2.4e-26 92.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|20091038|ref|NP_617113.1| - 1e-08 35.0 0.0 1.5e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Peptidase_C39_2 PF13529.1 gi|20091039|ref|NP_617114.1| - 2.8e-20 73.1 0.0 3.9e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase_C39 like family Peptidase_C39 PF03412.10 gi|20091039|ref|NP_617114.1| - 2.6e-09 36.9 0.0 1e-08 35.0 0.0 1.9 2 1 0 2 2 2 1 Peptidase C39 family DUF3335 PF11814.3 gi|20091039|ref|NP_617114.1| - 7e-06 25.3 0.9 0.0033 16.5 0.1 2.3 1 1 1 2 2 2 2 Peptidase_C39 like family Transpep_BrtH PF14399.1 gi|20091039|ref|NP_617114.1| - 1.9e-05 24.1 0.0 2.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 NlpC/p60-like transpeptidase Guanylate_cyc_2 PF09778.4 gi|20091039|ref|NP_617114.1| - 0.057 12.6 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Guanylylate cyclase VWA_2 PF13519.1 gi|20091040|ref|NP_617115.1| - 2e-13 50.7 0.0 3.8e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|20091040|ref|NP_617115.1| - 3.8e-11 42.5 0.0 1.8e-09 37.0 0.0 2.2 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|20091040|ref|NP_617115.1| - 9.4e-08 31.9 0.1 2.4e-07 30.6 0.1 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|20091040|ref|NP_617115.1| - 1.8e-05 24.4 0.0 4.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|20091040|ref|NP_617115.1| - 0.024 14.6 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 VWA-like domain (DUF2201) DUF2828 PF11443.3 gi|20091040|ref|NP_617115.1| - 0.039 12.1 0.0 0.064 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) DUF444 PF04285.7 gi|20091040|ref|NP_617115.1| - 0.092 11.3 0.0 0.27 9.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF444) AAA_5 PF07728.9 gi|20091041|ref|NP_617116.1| - 2.6e-26 91.9 0.0 5.7e-26 90.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|20091041|ref|NP_617116.1| - 1.6e-06 28.3 0.0 1e-05 25.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|20091041|ref|NP_617116.1| - 1.5e-05 24.5 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|20091041|ref|NP_617116.1| - 0.0038 17.2 0.0 0.011 15.6 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|20091041|ref|NP_617116.1| - 0.0071 15.7 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DJ-1_PfpI PF01965.19 gi|20091041|ref|NP_617116.1| - 0.0099 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family Mg_chelatase PF01078.16 gi|20091041|ref|NP_617116.1| - 0.02 14.0 0.0 0.056 12.5 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_PrkA PF08298.6 gi|20091041|ref|NP_617116.1| - 0.093 11.4 0.0 5.6 5.5 0.0 2.9 2 1 1 3 3 3 0 PrkA AAA domain AAA_25 PF13481.1 gi|20091041|ref|NP_617116.1| - 0.11 11.9 0.0 0.41 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain MCM PF00493.18 gi|20091041|ref|NP_617116.1| - 0.12 11.1 0.0 0.22 10.2 0.0 1.3 1 0 0 1 1 1 0 MCM2/3/5 family IstB_IS21 PF01695.12 gi|20091042|ref|NP_617117.1| - 3.9e-68 228.3 0.0 6e-68 227.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20091042|ref|NP_617117.1| - 6.3e-05 23.1 0.1 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20091042|ref|NP_617117.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|20091042|ref|NP_617117.1| - 0.00021 21.2 0.2 0.0028 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20091042|ref|NP_617117.1| - 0.00031 20.0 0.0 0.00046 19.4 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_17 PF13207.1 gi|20091042|ref|NP_617117.1| - 0.00056 20.7 1.6 0.0032 18.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20091042|ref|NP_617117.1| - 0.0011 18.3 0.1 0.0031 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|20091042|ref|NP_617117.1| - 0.0017 18.4 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|20091042|ref|NP_617117.1| - 0.0038 17.3 0.1 0.87 9.7 0.0 2.9 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20091042|ref|NP_617117.1| - 0.0069 15.4 0.1 0.011 14.8 0.0 1.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|20091042|ref|NP_617117.1| - 0.012 14.8 0.0 0.096 11.8 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|20091042|ref|NP_617117.1| - 0.018 14.9 0.5 0.061 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|20091042|ref|NP_617117.1| - 0.034 13.3 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20091042|ref|NP_617117.1| - 0.055 13.4 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20091042|ref|NP_617117.1| - 0.061 13.2 0.1 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20091042|ref|NP_617117.1| - 0.063 13.2 0.2 0.24 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|20091042|ref|NP_617117.1| - 0.072 12.5 3.1 0.19 11.1 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_19 PF13245.1 gi|20091042|ref|NP_617117.1| - 0.079 12.7 0.1 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|20091042|ref|NP_617117.1| - 0.12 11.1 0.0 0.24 10.1 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|20091042|ref|NP_617117.1| - 0.2 11.9 2.2 0.25 11.6 0.1 2.2 2 2 0 2 2 2 0 AAA domain rve PF00665.21 gi|20091043|ref|NP_617118.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091043|ref|NP_617118.1| - 3e-05 23.4 0.0 7.6e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20091043|ref|NP_617118.1| - 0.00095 18.6 0.1 0.0023 17.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20091043|ref|NP_617118.1| - 0.0018 17.7 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091043|ref|NP_617118.1| - 0.0059 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|20091043|ref|NP_617118.1| - 0.009 15.6 0.0 0.024 14.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|20091043|ref|NP_617118.1| - 0.013 15.0 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 HTH domain MerR_1 PF13411.1 gi|20091043|ref|NP_617118.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_5 PF01022.15 gi|20091043|ref|NP_617118.1| - 0.022 14.4 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|20091043|ref|NP_617118.1| - 0.031 13.8 0.0 0.075 12.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2312 PF10073.4 gi|20091043|ref|NP_617118.1| - 0.043 13.1 0.0 2.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_7 PF02796.10 gi|20091043|ref|NP_617118.1| - 0.047 13.5 0.2 0.9 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|20091043|ref|NP_617118.1| - 0.05 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF746 PF05344.6 gi|20091043|ref|NP_617118.1| - 0.062 12.8 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|20091043|ref|NP_617118.1| - 0.076 13.0 0.0 0.25 11.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|20091043|ref|NP_617118.1| - 0.083 12.2 0.8 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|20091043|ref|NP_617118.1| - 0.087 12.6 0.2 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix CotH PF08757.6 gi|20091044|ref|NP_617119.1| - 1.6e-38 132.7 6.3 2.5e-33 115.6 0.7 2.2 2 0 0 2 2 2 2 CotH protein Ion_trans PF00520.26 gi|20091045|ref|NP_617120.1| - 0.057 12.6 7.2 0.081 12.1 4.9 1.4 1 1 0 1 1 1 0 Ion transport protein QueT PF06177.6 gi|20091045|ref|NP_617120.1| - 0.48 10.4 10.1 1.8 8.4 7.0 1.9 1 1 0 1 1 1 0 QueT transporter DUF2919 PF11143.3 gi|20091045|ref|NP_617120.1| - 0.62 9.8 5.7 0.14 12.0 1.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) DUF2104 PF09877.4 gi|20091045|ref|NP_617120.1| - 0.74 9.8 9.7 4.6 7.2 1.9 3.0 1 1 2 3 3 3 0 Predicted membrane protein (DUF2104) DUF3522 PF12036.3 gi|20091045|ref|NP_617120.1| - 0.91 9.2 7.0 0.71 9.6 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3522) Myc_target_1 PF15179.1 gi|20091045|ref|NP_617120.1| - 1.8 8.0 4.8 4.3 6.8 0.7 2.3 2 0 0 2 2 2 0 Myc target protein 1 PAP2 PF01569.16 gi|20091045|ref|NP_617120.1| - 4 7.1 8.1 6.2 6.5 0.2 2.4 2 0 0 2 2 2 0 PAP2 superfamily VTC PF09359.5 gi|20091046|ref|NP_617121.1| - 4.3e-43 147.3 3.7 6.4e-43 146.7 2.6 1.2 1 0 0 1 1 1 1 VTC domain MarR PF01047.17 gi|20091047|ref|NP_617122.1| - 1.9e-14 53.0 0.0 3.5e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20091047|ref|NP_617122.1| - 4.1e-10 39.8 0.0 6.5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20091047|ref|NP_617122.1| - 1.6e-09 37.3 0.0 2.6e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|20091047|ref|NP_617122.1| - 4.9e-05 23.2 0.0 9.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|20091047|ref|NP_617122.1| - 0.00018 21.0 0.0 0.00035 20.1 0.0 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|20091047|ref|NP_617122.1| - 0.00027 20.7 0.1 0.00057 19.6 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|20091047|ref|NP_617122.1| - 0.00031 20.2 0.0 0.00065 19.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|20091047|ref|NP_617122.1| - 0.00053 19.6 0.1 0.0014 18.3 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3116 PF11313.3 gi|20091047|ref|NP_617122.1| - 0.0062 16.1 0.0 0.012 15.1 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) DUF4364 PF14277.1 gi|20091047|ref|NP_617122.1| - 0.0076 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_Crp_2 PF13545.1 gi|20091047|ref|NP_617122.1| - 0.02 14.7 0.0 0.072 12.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|20091047|ref|NP_617122.1| - 0.027 14.3 0.3 0.069 13.0 0.0 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF387 PF04079.11 gi|20091047|ref|NP_617122.1| - 0.048 13.0 0.0 0.07 12.4 0.0 1.3 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) PadR PF03551.9 gi|20091047|ref|NP_617122.1| - 0.052 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|20091047|ref|NP_617122.1| - 0.055 13.1 0.1 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator Ftsk_gamma PF09397.5 gi|20091047|ref|NP_617122.1| - 0.12 12.1 0.1 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain TrmB PF01978.14 gi|20091048|ref|NP_617123.1| - 3.5e-26 90.6 0.0 4.5e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|20091048|ref|NP_617123.1| - 0.00014 21.3 0.0 0.00056 19.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|20091048|ref|NP_617123.1| - 0.00062 19.0 0.0 0.0017 17.6 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20091048|ref|NP_617123.1| - 0.0012 18.4 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|20091048|ref|NP_617123.1| - 0.0033 17.4 0.0 0.0085 16.1 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator Penicillinase_R PF03965.11 gi|20091048|ref|NP_617123.1| - 0.034 14.2 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.17 gi|20091048|ref|NP_617123.1| - 0.035 13.7 0.0 0.082 12.6 0.0 1.6 2 0 0 2 2 2 0 MarR family PadR PF03551.9 gi|20091048|ref|NP_617123.1| - 0.045 13.5 0.1 1.9 8.3 0.0 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|20091048|ref|NP_617123.1| - 0.096 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|20091048|ref|NP_617123.1| - 0.1 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|20091048|ref|NP_617123.1| - 0.13 12.3 0.1 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MMPL PF03176.10 gi|20091049|ref|NP_617124.1| - 1.8e-54 184.7 20.3 1.4e-28 99.6 2.8 2.7 2 1 1 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|20091049|ref|NP_617124.1| - 1.5e-12 47.2 17.1 2.3e-06 27.1 4.0 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|20091049|ref|NP_617124.1| - 3.8e-10 39.2 8.8 3.8e-10 39.2 6.1 3.3 2 1 1 3 3 3 1 Protein export membrane protein Patched PF02460.13 gi|20091049|ref|NP_617124.1| - 5.4e-10 37.8 15.7 5.5e-06 24.6 4.2 2.8 3 0 0 3 3 3 2 Patched family ACR_tran PF00873.14 gi|20091049|ref|NP_617124.1| - 6e-07 27.3 27.5 0.00055 17.4 4.6 3.0 3 0 0 3 3 3 2 AcrB/AcrD/AcrF family HpcH_HpaI PF03328.9 gi|20091049|ref|NP_617124.1| - 0.00064 18.6 0.2 0.002 17.0 0.1 1.8 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family SurA_N_3 PF13624.1 gi|20091049|ref|NP_617124.1| - 8.8 6.2 8.7 0.11 12.4 0.2 2.1 3 0 0 3 3 3 0 SurA N-terminal domain TrkH PF02386.11 gi|20091050|ref|NP_617125.1| - 2e-50 171.3 23.3 1.9e-47 161.6 11.7 2.3 2 0 0 2 2 2 2 Cation transport protein PgaD PF13994.1 gi|20091050|ref|NP_617125.1| - 3.9 6.9 6.2 11 5.5 0.1 2.7 3 0 0 3 3 3 0 PgaD-like protein TrkA_N PF02254.13 gi|20091051|ref|NP_617126.1| - 1.2e-25 89.8 1.1 1.8e-25 89.2 0.8 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|20091051|ref|NP_617126.1| - 2e-11 43.3 0.3 1.3e-10 40.7 0.0 2.4 3 0 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.12 gi|20091051|ref|NP_617126.1| - 0.00029 21.1 0.1 0.0016 18.8 0.1 2.1 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|20091051|ref|NP_617126.1| - 0.002 18.3 0.3 0.0041 17.3 0.2 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|20091051|ref|NP_617126.1| - 0.0032 17.7 0.1 0.0075 16.5 0.1 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|20091051|ref|NP_617126.1| - 0.0082 15.8 0.6 0.012 15.2 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|20091051|ref|NP_617126.1| - 0.0094 15.8 0.2 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|20091051|ref|NP_617126.1| - 0.011 15.6 0.2 0.015 15.1 0.1 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Pyr_redox PF00070.22 gi|20091051|ref|NP_617126.1| - 0.021 15.2 0.1 0.053 13.9 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|20091051|ref|NP_617126.1| - 0.039 13.0 0.0 0.08 11.9 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.9 gi|20091051|ref|NP_617126.1| - 0.047 12.1 0.0 0.055 11.9 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_Gly3P_dh_N PF01210.18 gi|20091051|ref|NP_617126.1| - 0.047 13.4 0.0 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|20091051|ref|NP_617126.1| - 0.051 13.0 0.0 0.11 11.9 0.0 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Antitoxin-MazE PF04014.13 gi|20091051|ref|NP_617126.1| - 0.082 12.6 1.2 19 5.0 0.1 3.0 3 0 0 3 3 3 0 Antidote-toxin recognition MazE CTP_transf_3 PF02348.14 gi|20091051|ref|NP_617126.1| - 0.086 12.4 0.1 0.27 10.8 0.0 1.8 1 1 0 2 2 2 0 Cytidylyltransferase Pyr_redox_2 PF07992.9 gi|20091051|ref|NP_617126.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase MarR PF01047.17 gi|20091052|ref|NP_617127.1| - 3.9e-12 45.6 0.0 1.2e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|20091052|ref|NP_617127.1| - 5.8e-09 36.1 0.1 1.1e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20091052|ref|NP_617127.1| - 9.6e-09 34.7 0.0 2.1e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|20091052|ref|NP_617127.1| - 0.0012 18.6 0.1 0.0034 17.1 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|20091052|ref|NP_617127.1| - 0.0029 17.5 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|20091052|ref|NP_617127.1| - 0.0068 16.0 0.1 0.015 14.8 0.0 1.6 2 0 0 2 2 2 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|20091052|ref|NP_617127.1| - 0.026 14.2 0.1 0.11 12.2 0.0 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB D123 PF07065.9 gi|20091052|ref|NP_617127.1| - 0.028 13.5 0.0 0.039 13.0 0.0 1.2 1 0 0 1 1 1 0 D123 HTH_IclR PF09339.5 gi|20091052|ref|NP_617127.1| - 0.049 13.2 0.0 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|20091052|ref|NP_617127.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC YscJ_FliF PF01514.12 gi|20091052|ref|NP_617127.1| - 0.082 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family Ftsk_gamma PF09397.5 gi|20091052|ref|NP_617127.1| - 0.086 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain TFIIE_alpha PF02002.12 gi|20091052|ref|NP_617127.1| - 0.092 12.2 0.3 0.41 10.1 0.2 2.1 1 1 0 1 1 1 0 TFIIE alpha subunit TelA PF05816.6 gi|20091052|ref|NP_617127.1| - 0.096 11.3 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) TrmB PF01978.14 gi|20091053|ref|NP_617128.1| - 7.2e-24 83.2 0.0 9.7e-24 82.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|20091053|ref|NP_617128.1| - 4.7e-05 22.8 0.0 0.00031 20.2 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|20091053|ref|NP_617128.1| - 0.0013 18.3 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20091053|ref|NP_617128.1| - 0.0023 17.5 0.0 0.0053 16.4 0.0 1.6 1 1 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|20091053|ref|NP_617128.1| - 0.01 15.9 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|20091053|ref|NP_617128.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|20091053|ref|NP_617128.1| - 0.14 11.9 0.0 8.7 6.2 0.0 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|20091053|ref|NP_617128.1| - 0.15 11.4 0.7 0.83 9.0 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20091054|ref|NP_617129.1| - 0.0035 17.0 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|20091054|ref|NP_617129.1| - 0.0083 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|20091054|ref|NP_617129.1| - 0.016 14.7 1.0 0.017 14.6 0.7 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_24 PF13412.1 gi|20091054|ref|NP_617129.1| - 0.036 13.4 0.1 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4411 PF14367.1 gi|20091054|ref|NP_617129.1| - 0.092 12.4 0.1 0.096 12.3 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) DDRGK PF09756.4 gi|20091054|ref|NP_617129.1| - 0.25 10.7 4.2 0.042 13.2 0.7 1.3 2 0 0 2 2 2 0 DDRGK domain UPF0118 PF01594.11 gi|20091055|ref|NP_617130.1| - 8.9e-41 139.9 26.3 1.1e-40 139.6 18.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF3488 PF11992.3 gi|20091055|ref|NP_617130.1| - 7.1 5.1 8.0 14 4.2 5.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) ABC_tran PF00005.22 gi|20091056|ref|NP_617131.1| - 3.5e-24 85.6 0.0 4.6e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091056|ref|NP_617131.1| - 2.7e-13 50.5 0.4 1.5e-08 34.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20091056|ref|NP_617131.1| - 1.3e-07 31.0 0.0 1.9e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|20091056|ref|NP_617131.1| - 0.0007 19.9 0.3 0.0012 19.2 0.2 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091056|ref|NP_617131.1| - 0.017 14.3 0.1 0.62 9.2 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20091056|ref|NP_617131.1| - 0.024 14.1 0.2 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|20091056|ref|NP_617131.1| - 0.026 14.7 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|20091056|ref|NP_617131.1| - 0.028 12.9 0.3 3.4 6.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|20091056|ref|NP_617131.1| - 0.033 15.0 0.0 0.61 10.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|20091056|ref|NP_617131.1| - 0.059 12.5 0.1 0.086 11.9 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|20091056|ref|NP_617131.1| - 0.066 13.1 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|20091056|ref|NP_617131.1| - 0.087 12.7 0.1 2.5 7.9 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|20091056|ref|NP_617131.1| - 0.098 12.5 0.1 0.16 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|20091056|ref|NP_617131.1| - 0.16 11.4 0.1 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DPM3 PF08285.6 gi|20091057|ref|NP_617132.1| - 0.027 14.2 0.2 0.034 13.9 0.2 1.2 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Ion_trans_2 PF07885.11 gi|20091059|ref|NP_617134.1| - 2.7e-24 84.6 12.6 4.1e-24 84.0 8.8 1.3 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.26 gi|20091059|ref|NP_617134.1| - 0.0003 20.1 2.2 0.0003 20.1 1.6 1.9 2 0 0 2 2 2 1 Ion transport protein DUF2254 PF10011.4 gi|20091059|ref|NP_617134.1| - 0.021 13.3 0.0 0.034 12.6 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Herpes_UL7 PF01677.11 gi|20091059|ref|NP_617134.1| - 0.16 11.2 0.2 0.19 11.0 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL7 like MerC PF03203.9 gi|20091059|ref|NP_617134.1| - 0.24 11.7 1.0 0.32 11.3 0.7 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein EmrE PF13536.1 gi|20091059|ref|NP_617134.1| - 1.1 9.5 5.5 7.5 6.7 3.8 2.0 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF202 PF02656.10 gi|20091059|ref|NP_617134.1| - 1.7 8.8 5.3 6.1 7.1 2.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF2099 PF09872.4 gi|20091060|ref|NP_617135.1| - 6e-111 369.5 4.6 6.8e-111 369.3 3.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Saccharop_dh PF03435.13 gi|20091060|ref|NP_617135.1| - 0.14 11.0 1.5 0.3 10.0 0.3 2.0 3 0 0 3 3 3 0 Saccharopine dehydrogenase MTH865 PF07747.6 gi|20091061|ref|NP_617136.1| - 4.3e-35 119.1 0.1 4.7e-35 119.0 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Phage_integrase PF00589.17 gi|20091064|ref|NP_617139.1| - 5.8e-20 71.6 0.1 1e-19 70.8 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|20091064|ref|NP_617139.1| - 1.2e-12 47.9 1.0 4.7e-12 46.0 0.4 2.2 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.2 gi|20091064|ref|NP_617139.1| - 0.00029 20.5 1.1 0.00071 19.3 0.8 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|20091064|ref|NP_617139.1| - 0.00094 18.3 1.2 0.0021 17.2 0.8 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_1 PF02899.12 gi|20091064|ref|NP_617139.1| - 0.0086 16.2 0.1 0.031 14.4 0.1 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.1 gi|20091064|ref|NP_617139.1| - 0.12 11.9 3.9 0.36 10.3 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Phage_integrase PF00589.17 gi|20091071|ref|NP_617146.1| - 7.4e-23 81.0 0.1 1.6e-22 79.9 0.1 1.5 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|20091071|ref|NP_617146.1| - 7.3e-09 35.8 0.1 2.4e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|20091071|ref|NP_617146.1| - 0.0001 22.3 0.1 0.0088 16.1 0.1 2.6 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain AAA_21 PF13304.1 gi|20091072|ref|NP_617147.1| - 6.5e-25 88.6 2.8 6.5e-25 88.6 2.0 3.0 2 2 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|20091072|ref|NP_617147.1| - 8.2e-23 81.1 7.7 1e-13 51.1 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|20091072|ref|NP_617147.1| - 8.7e-14 52.3 0.1 1.9e-11 44.6 0.1 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20091072|ref|NP_617147.1| - 3e-09 36.4 0.4 8e-05 21.9 0.2 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20091072|ref|NP_617147.1| - 0.0011 18.3 0.0 0.003 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|20091072|ref|NP_617147.1| - 0.024 14.9 0.7 0.34 11.2 0.3 2.7 2 1 0 2 2 2 0 ABC transporter ABC_ATPase PF09818.4 gi|20091072|ref|NP_617147.1| - 0.026 13.1 0.1 0.038 12.5 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|20091072|ref|NP_617147.1| - 0.048 13.7 0.4 4 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|20091072|ref|NP_617147.1| - 0.059 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF2813 PF11398.3 gi|20091072|ref|NP_617147.1| - 0.062 12.3 1.0 1.9 7.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) Vps39_2 PF10367.4 gi|20091072|ref|NP_617147.1| - 0.14 12.3 0.7 0.31 11.2 0.5 1.5 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 MutS_V PF00488.16 gi|20091072|ref|NP_617147.1| - 0.16 11.3 0.1 0.84 8.9 0.0 1.9 2 0 0 2 2 2 0 MutS domain V Methylase_S PF01420.14 gi|20091073|ref|NP_617148.1| - 0.00011 22.2 19.5 0.95 9.4 0.2 5.6 2 2 5 7 7 7 3 Type I restriction modification DNA specificity domain DUF4504 PF14953.1 gi|20091073|ref|NP_617148.1| - 0.00015 21.1 2.7 0.26 10.5 0.1 2.5 1 1 2 3 3 3 3 Domain of unknown function (DUF4504) PSD2 PF07624.6 gi|20091073|ref|NP_617148.1| - 0.0038 16.8 7.5 4.3 7.0 0.0 4.4 4 0 0 4 4 4 1 Protein of unknown function (DUF1585) GCV_H PF01597.14 gi|20091073|ref|NP_617148.1| - 0.006 16.2 13.7 15 5.2 0.1 6.0 1 1 4 5 5 5 0 Glycine cleavage H-protein DUF3243 PF11588.3 gi|20091073|ref|NP_617148.1| - 0.013 15.4 4.0 1.9 8.5 0.1 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3243) DUF1992 PF09350.5 gi|20091073|ref|NP_617148.1| - 0.014 15.2 18.7 10 6.0 0.1 6.0 1 1 4 5 5 5 0 Domain of unknown function (DUF1992) FH2 PF02181.18 gi|20091073|ref|NP_617148.1| - 0.057 12.2 7.9 0.98 8.2 0.6 2.3 1 1 0 2 2 2 0 Formin Homology 2 Domain SNARE PF05739.14 gi|20091073|ref|NP_617148.1| - 0.11 12.1 11.9 26 4.6 0.1 5.0 2 2 1 4 4 4 0 SNARE domain HAP1_N PF04849.8 gi|20091073|ref|NP_617148.1| - 0.19 10.6 13.4 3.4 6.5 2.5 3.1 1 1 2 3 3 3 0 HAP1 N-terminal conserved region MCP_N PF05581.7 gi|20091073|ref|NP_617148.1| - 0.2 11.8 10.2 3.9 7.6 0.6 3.5 1 1 2 4 4 4 0 Vibrio chemotaxis protein N terminus TMPIT PF07851.8 gi|20091073|ref|NP_617148.1| - 0.2 10.6 9.3 0.62 9.0 1.0 2.2 1 1 0 2 2 2 0 TMPIT-like protein BBP1_C PF15272.1 gi|20091073|ref|NP_617148.1| - 0.25 10.8 2.6 3.7 7.0 0.2 2.2 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal ArdA PF07275.6 gi|20091073|ref|NP_617148.1| - 0.51 10.5 7.6 14 5.8 0.5 3.1 1 1 2 3 3 3 0 Antirestriction protein (ArdA) DUF643 PF04867.7 gi|20091073|ref|NP_617148.1| - 1.1 9.7 9.4 16 5.8 0.9 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF643) MCPsignal PF00015.16 gi|20091073|ref|NP_617148.1| - 1.1 8.7 25.7 1.8 8.0 11.6 2.9 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain ACCA PF03255.9 gi|20091073|ref|NP_617148.1| - 1.7 8.2 8.9 6.6 6.2 0.3 3.7 1 1 5 6 6 6 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF4071 PF13281.1 gi|20091073|ref|NP_617148.1| - 1.7 7.4 7.2 1.4 7.7 4.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4071) 2-Hacid_dh PF00389.25 gi|20091073|ref|NP_617148.1| - 1.9 7.9 4.3 50 3.3 0.4 3.6 2 2 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DUF1792 PF08759.6 gi|20091073|ref|NP_617148.1| - 4 6.9 11.5 19 4.8 0.2 3.8 1 1 1 3 3 3 0 Domain of unknown function (DUF1792) STAT_alpha PF01017.15 gi|20091073|ref|NP_617148.1| - 8.9 5.9 10.7 11 5.7 1.8 2.2 1 1 1 2 2 2 0 STAT protein, all-alpha domain DUF927 PF06048.6 gi|20091075|ref|NP_617150.1| - 2.4e-72 243.6 0.0 3.4e-72 243.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF927) DUF1673 PF07895.6 gi|20091076|ref|NP_617151.1| - 0.066 12.7 2.2 0.079 12.4 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) SieB PF14163.1 gi|20091076|ref|NP_617151.1| - 0.14 11.7 1.0 0.22 11.1 0.2 1.7 2 0 0 2 2 2 0 Superinfection exclusion protein B DUF3278 PF11683.3 gi|20091076|ref|NP_617151.1| - 0.17 11.8 1.8 0.24 11.3 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) Abi PF02517.11 gi|20091076|ref|NP_617151.1| - 0.23 11.6 1.5 0.42 10.7 1.0 1.4 1 0 0 1 1 1 0 CAAX protease self-immunity DUF2099 PF09872.4 gi|20091078|ref|NP_617153.1| - 2.5e-116 387.2 1.7 2.8e-116 387.0 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) AAA_9 PF12781.2 gi|20091078|ref|NP_617153.1| - 0.071 11.9 0.1 0.24 10.2 0.0 1.8 2 0 0 2 2 2 0 ATP-binding dynein motor region D5 Usp PF00582.21 gi|20091078|ref|NP_617153.1| - 0.08 13.1 0.1 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 Universal stress protein family TPR_12 PF13424.1 gi|20091079|ref|NP_617154.1| - 5.3e-59 196.0 6.7 1.6e-15 56.8 0.4 5.6 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20091079|ref|NP_617154.1| - 3.4e-50 165.6 14.7 2e-07 30.3 0.4 8.8 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20091079|ref|NP_617154.1| - 8.4e-50 162.6 0.6 4.2e-07 29.2 0.0 9.7 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20091079|ref|NP_617154.1| - 3.2e-40 135.6 8.0 2.2e-12 46.4 0.5 6.0 4 2 1 5 5 5 5 TPR repeat TPR_8 PF13181.1 gi|20091079|ref|NP_617154.1| - 5.6e-38 125.8 21.4 2.3e-05 23.8 0.0 9.2 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20091079|ref|NP_617154.1| - 1e-37 124.9 14.6 4.7e-06 26.1 0.2 9.4 10 0 0 10 10 8 8 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20091079|ref|NP_617154.1| - 8.4e-26 89.0 0.0 0.00094 19.0 0.0 8.4 7 1 1 8 8 8 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|20091079|ref|NP_617154.1| - 3.2e-19 68.8 2.6 1e-06 28.7 0.0 5.2 3 1 1 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|20091079|ref|NP_617154.1| - 1.9e-17 62.1 0.0 0.19 12.4 0.0 9.0 8 1 1 9 9 8 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20091079|ref|NP_617154.1| - 1.2e-14 54.5 0.0 8.7e-05 23.0 0.0 5.8 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20091079|ref|NP_617154.1| - 4.1e-14 51.9 5.7 1.1 9.8 0.0 8.2 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20091079|ref|NP_617154.1| - 2.8e-12 46.7 6.7 0.0014 18.9 0.1 5.6 5 1 1 6 6 5 4 Tetratricopeptide repeat SNAP PF14938.1 gi|20091079|ref|NP_617154.1| - 1.6e-09 37.3 1.5 0.00029 20.0 0.2 2.9 1 1 2 3 3 3 3 Soluble NSF attachment protein, SNAP TPR_9 PF13371.1 gi|20091079|ref|NP_617154.1| - 5.4e-08 32.5 0.0 0.86 9.5 0.0 5.9 3 3 2 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20091079|ref|NP_617154.1| - 6.3e-08 32.0 1.5 0.00014 20.9 0.0 5.0 4 1 2 6 6 6 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|20091079|ref|NP_617154.1| - 8.5e-08 31.9 2.7 0.21 11.4 0.0 6.9 3 2 3 6 6 6 1 Anaphase-promoting complex subunit 5 Rapsyn_N PF10579.4 gi|20091079|ref|NP_617154.1| - 6.2e-07 29.1 3.3 0.023 14.4 0.0 5.0 3 1 3 6 6 6 2 Rapsyn N-terminal myristoylation and linker region RPN7 PF10602.4 gi|20091079|ref|NP_617154.1| - 3.6e-06 26.4 4.6 0.13 11.6 0.1 4.8 1 1 2 3 3 3 2 26S proteasome subunit RPN7 TPR_17 PF13431.1 gi|20091079|ref|NP_617154.1| - 9.8e-05 22.2 6.9 6.5 7.2 0.1 7.1 6 1 1 7 7 7 0 Tetratricopeptide repeat PPR PF01535.15 gi|20091079|ref|NP_617154.1| - 0.0045 16.8 13.4 15 5.8 0.0 8.1 10 0 0 10 10 8 0 PPR repeat DUF3808 PF10300.4 gi|20091079|ref|NP_617154.1| - 0.0053 15.3 0.1 0.016 13.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3808) DUF2225 PF09986.4 gi|20091079|ref|NP_617154.1| - 0.016 14.6 2.5 9 5.6 0.7 3.7 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF1107 PF06526.7 gi|20091079|ref|NP_617154.1| - 0.033 13.9 0.4 12 5.7 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1107) MIT PF04212.13 gi|20091079|ref|NP_617154.1| - 0.047 13.5 11.3 9.4 6.2 0.0 5.7 5 1 1 6 6 5 0 MIT (microtubule interacting and transport) domain Sel1 PF08238.7 gi|20091079|ref|NP_617154.1| - 0.16 12.6 9.8 20 6.0 0.2 5.6 7 0 0 7 7 4 0 Sel1 repeat Foie-gras_1 PF11817.3 gi|20091079|ref|NP_617154.1| - 0.26 10.7 1.2 34 3.8 0.1 3.7 1 1 3 5 5 5 0 Foie gras liver health family 1 TPR_3 PF07720.7 gi|20091079|ref|NP_617154.1| - 0.58 10.0 12.8 0.97 9.2 0.0 4.7 6 0 0 6 6 4 0 Tetratricopeptide repeat FAST_2 PF08368.7 gi|20091080|ref|NP_617155.1| - 0.0018 18.5 0.0 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 FAST kinase-like protein, subdomain 2 MULE PF10551.4 gi|20091082|ref|NP_617157.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091082|ref|NP_617157.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091082|ref|NP_617157.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20091082|ref|NP_617157.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091082|ref|NP_617157.1| - 0.042 13.5 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20091082|ref|NP_617157.1| - 0.051 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20091082|ref|NP_617157.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091082|ref|NP_617157.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger TPR_12 PF13424.1 gi|20091083|ref|NP_617158.1| - 8.9e-55 182.5 23.3 7.6e-17 61.0 0.4 3.9 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20091083|ref|NP_617158.1| - 4e-35 117.9 21.7 8.2e-08 31.5 0.4 5.7 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20091083|ref|NP_617158.1| - 2.3e-33 111.3 9.7 1.5e-07 30.6 0.2 6.5 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20091083|ref|NP_617158.1| - 2.6e-28 95.6 14.8 5.6e-06 25.8 0.3 5.4 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20091083|ref|NP_617158.1| - 1.3e-26 90.3 19.9 2.2e-06 27.0 0.3 5.9 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20091083|ref|NP_617158.1| - 2.2e-24 84.8 12.9 7.5e-11 41.5 0.9 4.6 3 1 1 4 4 4 4 TPR repeat TPR_10 PF13374.1 gi|20091083|ref|NP_617158.1| - 2.3e-23 81.3 10.2 0.00015 21.5 0.3 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20091083|ref|NP_617158.1| - 4.6e-12 45.4 1.8 0.081 13.5 0.1 5.4 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20091083|ref|NP_617158.1| - 1.7e-11 43.7 11.9 0.043 14.2 0.3 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20091083|ref|NP_617158.1| - 2.5e-11 43.9 3.1 2.9e-05 24.6 0.3 3.9 3 1 1 4 4 4 3 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|20091083|ref|NP_617158.1| - 1.9e-09 37.1 2.5 0.0023 17.7 0.1 3.7 3 0 0 3 3 3 3 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.1 gi|20091083|ref|NP_617158.1| - 2.1e-08 33.6 1.7 2.1e-06 27.0 0.2 2.7 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_3 PF07720.7 gi|20091083|ref|NP_617158.1| - 5.9e-07 29.1 12.0 0.057 13.2 0.1 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20091083|ref|NP_617158.1| - 2.8e-06 27.3 3.4 0.037 14.1 0.3 4.3 1 1 4 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.1 gi|20091083|ref|NP_617158.1| - 3e-06 26.4 1.0 0.073 12.1 0.0 3.7 2 1 0 3 3 3 1 Tetratricopeptide repeat DUF2225 PF09986.4 gi|20091083|ref|NP_617158.1| - 3.6e-06 26.6 1.5 9.4e-05 21.9 0.2 2.9 1 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2225) Apc5 PF12862.2 gi|20091083|ref|NP_617158.1| - 0.0001 22.0 0.0 26 4.7 0.0 4.8 4 1 1 5 5 5 0 Anaphase-promoting complex subunit 5 TPR_9 PF13371.1 gi|20091083|ref|NP_617158.1| - 0.00012 21.8 1.0 0.43 10.4 0.0 3.9 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20091083|ref|NP_617158.1| - 0.0002 21.6 8.7 0.12 12.7 0.7 4.3 2 2 3 5 5 5 2 Tetratricopeptide repeat RPN7 PF10602.4 gi|20091083|ref|NP_617158.1| - 0.0029 17.0 7.8 1.8 7.8 0.0 4.4 2 1 2 4 4 4 1 26S proteasome subunit RPN7 DUF3856 PF12968.2 gi|20091083|ref|NP_617158.1| - 0.0067 16.2 4.2 0.22 11.3 0.2 3.3 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_17 PF13431.1 gi|20091083|ref|NP_617158.1| - 0.0076 16.3 8.8 15 6.1 0.0 6.1 4 2 1 5 5 5 0 Tetratricopeptide repeat MIT PF04212.13 gi|20091083|ref|NP_617158.1| - 0.011 15.6 18.0 0.76 9.7 0.4 5.3 4 1 2 6 6 5 0 MIT (microtubule interacting and transport) domain TPR_5 PF12688.2 gi|20091083|ref|NP_617158.1| - 0.022 14.7 0.5 15 5.6 0.0 3.5 3 0 0 3 3 3 0 Tetratrico peptide repeat Foie-gras_1 PF11817.3 gi|20091083|ref|NP_617158.1| - 0.028 13.9 1.6 0.12 11.8 0.3 2.6 3 1 1 4 4 4 0 Foie gras liver health family 1 DUF1359 PF07097.6 gi|20091083|ref|NP_617158.1| - 0.049 13.6 0.2 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1359) DUF3366 PF11846.3 gi|20091083|ref|NP_617158.1| - 0.11 12.4 0.0 3.7 7.3 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF3366) NSF PF02071.15 gi|20091083|ref|NP_617158.1| - 0.12 12.9 10.3 3.1 8.7 0.3 4.4 4 0 0 4 4 3 0 Aromatic-di-Alanine (AdAR) repeat Sel1 PF08238.7 gi|20091083|ref|NP_617158.1| - 0.18 12.4 16.2 1 10.0 0.1 4.8 5 0 0 5 5 5 0 Sel1 repeat SPOB_a PF14689.1 gi|20091083|ref|NP_617158.1| - 0.24 10.9 3.9 6.1 6.4 0.0 4.0 5 0 0 5 5 4 0 Sensor_kinase_SpoOB-type, alpha-helical domain Fis1_TPR_C PF14853.1 gi|20091083|ref|NP_617158.1| - 0.26 11.1 2.4 8 6.4 0.0 3.6 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat PPR PF01535.15 gi|20091083|ref|NP_617158.1| - 0.45 10.5 11.2 20 5.4 0.0 5.8 7 0 0 7 7 6 0 PPR repeat AMP-binding_C_2 PF14535.1 gi|20091084|ref|NP_617159.1| - 1.2e-29 102.1 1.0 2.3e-29 101.2 0.3 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|20091084|ref|NP_617159.1| - 1.1e-21 76.7 0.0 2.4e-21 75.6 0.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|20091084|ref|NP_617159.1| - 0.0068 15.1 0.0 0.013 14.2 0.0 1.4 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE DUF1843 PF08898.5 gi|20091084|ref|NP_617159.1| - 0.07 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) Fer4 PF00037.22 gi|20091085|ref|NP_617160.1| - 8.6e-08 31.4 20.9 4.7e-05 22.8 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20091085|ref|NP_617160.1| - 2.5e-06 27.2 18.2 3e-06 26.9 12.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20091085|ref|NP_617160.1| - 3.5e-06 26.6 21.1 0.00022 20.9 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20091085|ref|NP_617160.1| - 1.7e-05 24.9 16.7 2.1e-05 24.6 11.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091085|ref|NP_617160.1| - 5.9e-05 22.7 16.9 0.00016 21.4 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20091085|ref|NP_617160.1| - 0.00019 21.7 17.6 0.00095 19.5 12.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20091085|ref|NP_617160.1| - 0.0005 19.8 18.6 0.0015 18.3 13.2 1.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091085|ref|NP_617160.1| - 0.0048 17.6 15.7 0.23 12.2 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20091085|ref|NP_617160.1| - 0.0062 16.7 20.5 0.025 14.8 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20091085|ref|NP_617160.1| - 0.024 14.6 18.1 0.6 10.1 13.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20091085|ref|NP_617160.1| - 0.24 11.7 19.5 0.17 12.2 3.0 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091085|ref|NP_617160.1| - 1.9 8.9 17.0 0.16 12.3 3.4 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20091085|ref|NP_617160.1| - 7.6 7.1 19.5 1.2e+02 3.3 13.5 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20091085|ref|NP_617160.1| - 9.2 7.1 23.7 3.1 8.5 5.2 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Serpin PF00079.15 gi|20091086|ref|NP_617161.1| - 5.6e-117 390.9 2.1 6.7e-117 390.7 1.5 1.1 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DUF3795 PF12675.2 gi|20091087|ref|NP_617162.1| - 1.7e-12 47.3 12.7 1.7e-12 47.3 8.8 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3795) zf-C3HC4_3 PF13920.1 gi|20091087|ref|NP_617162.1| - 0.0056 16.3 2.8 0.0056 16.3 2.0 3.2 3 1 0 3 3 3 2 Zinc finger, C3HC4 type (RING finger) DUF2246 PF10229.4 gi|20091087|ref|NP_617162.1| - 0.066 12.4 0.1 0.083 12.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2246) DZR PF12773.2 gi|20091087|ref|NP_617162.1| - 3.5 7.5 25.3 6.9 6.5 2.8 3.1 1 1 1 2 2 2 0 Double zinc ribbon NnrU PF07298.6 gi|20091088|ref|NP_617163.1| - 2e-06 27.3 3.5 2.8e-06 26.8 2.4 1.2 1 0 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|20091088|ref|NP_617163.1| - 5e-05 23.3 1.0 7.9e-05 22.7 0.2 1.8 2 0 0 2 2 2 1 Phospholipid methyltransferase Peptidase_S32 PF05579.8 gi|20091089|ref|NP_617164.1| - 0.0068 15.4 0.0 0.011 14.7 0.0 1.3 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Trypsin_2 PF13365.1 gi|20091089|ref|NP_617164.1| - 0.034 14.1 0.1 0.057 13.4 0.1 1.5 1 1 0 1 1 1 0 Trypsin-like peptidase domain Trypsin PF00089.21 gi|20091089|ref|NP_617164.1| - 0.13 11.8 0.1 5.4 6.5 0.2 2.3 1 1 0 2 2 2 0 Trypsin UPF0104 PF03706.8 gi|20091090|ref|NP_617165.1| - 1e-17 64.3 38.9 1.3e-17 63.9 27.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF1290 PF06947.7 gi|20091090|ref|NP_617165.1| - 0.51 10.2 5.4 0.17 11.8 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1290) DUF3353 PF11833.3 gi|20091090|ref|NP_617165.1| - 9.3 5.6 10.8 0.7 9.3 3.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) DUF1294 PF06961.8 gi|20091091|ref|NP_617166.1| - 4.5e-23 80.9 0.1 7.4e-23 80.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) AA_permease_2 PF13520.1 gi|20091091|ref|NP_617166.1| - 0.075 11.5 1.2 0.083 11.4 0.8 1.0 1 0 0 1 1 1 0 Amino acid permease NAD_binding_5 PF07994.7 gi|20091092|ref|NP_617167.1| - 8.6e-63 212.5 0.0 2.3e-62 211.1 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|20091092|ref|NP_617167.1| - 1.9e-34 117.8 0.0 3.1e-34 117.1 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase TPR_12 PF13424.1 gi|20091093|ref|NP_617168.1| - 2.1e-87 287.1 16.1 9.6e-25 86.3 0.4 5.6 4 1 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20091093|ref|NP_617168.1| - 1.5e-82 269.4 15.2 6.6e-13 48.1 0.1 9.8 10 0 0 10 10 9 8 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20091093|ref|NP_617168.1| - 3.4e-54 178.3 25.7 5.4e-08 32.1 0.2 8.4 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20091093|ref|NP_617168.1| - 2.3e-53 177.7 27.8 1.4e-13 50.3 0.7 5.3 2 2 4 6 6 6 6 TPR repeat TPR_7 PF13176.1 gi|20091093|ref|NP_617168.1| - 1.3e-43 143.3 18.1 1.8e-07 30.4 0.0 8.9 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20091093|ref|NP_617168.1| - 4.3e-42 138.6 24.8 2.2e-05 23.9 0.1 8.5 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20091093|ref|NP_617168.1| - 6.6e-27 91.2 26.8 0.0017 18.0 0.1 8.7 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20091093|ref|NP_617168.1| - 7.1e-24 82.1 8.2 0.022 15.3 0.0 8.2 4 2 4 8 8 8 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20091093|ref|NP_617168.1| - 9.3e-24 83.5 7.0 7.6e-07 29.6 0.1 6.0 3 3 3 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20091093|ref|NP_617168.1| - 3e-14 51.9 12.0 0.018 15.2 0.0 9.3 9 3 0 9 9 8 2 Tetratricopeptide repeat SNAP PF14938.1 gi|20091093|ref|NP_617168.1| - 6.8e-14 51.6 0.0 2.7e-05 23.4 0.2 3.2 3 0 0 3 3 3 3 Soluble NSF attachment protein, SNAP TPR_19 PF14559.1 gi|20091093|ref|NP_617168.1| - 9.1e-14 51.5 17.8 0.0017 18.6 0.3 6.3 2 2 6 8 8 8 6 Tetratricopeptide repeat MIT PF04212.13 gi|20091093|ref|NP_617168.1| - 3.8e-12 45.8 14.8 0.18 11.6 0.0 8.0 5 1 3 8 8 8 2 MIT (microtubule interacting and transport) domain Apc3 PF12895.2 gi|20091093|ref|NP_617168.1| - 7.9e-12 45.1 8.1 0.00012 22.1 2.4 4.9 2 1 4 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 DUF2225 PF09986.4 gi|20091093|ref|NP_617168.1| - 2.8e-09 36.7 4.3 0.0022 17.4 0.0 3.9 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2225) SHNi-TPR PF10516.4 gi|20091093|ref|NP_617168.1| - 4.6e-09 35.3 7.7 0.011 14.9 0.0 7.6 8 0 0 8 8 8 1 SHNi-TPR 14-3-3 PF00244.15 gi|20091093|ref|NP_617168.1| - 1.1e-08 34.5 3.5 0.019 14.0 0.0 4.3 3 2 2 5 5 5 2 14-3-3 protein TPR_9 PF13371.1 gi|20091093|ref|NP_617168.1| - 3.3e-07 30.0 0.6 0.24 11.2 0.0 5.4 3 2 2 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20091093|ref|NP_617168.1| - 5.3e-07 29.6 18.0 5.6 7.6 0.1 8.3 8 1 0 8 8 8 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|20091093|ref|NP_617168.1| - 2.3e-06 27.1 6.9 2.8 7.2 0.0 6.3 3 2 3 6 6 6 1 26S proteasome subunit RPN7 Sel1 PF08238.7 gi|20091093|ref|NP_617168.1| - 9.2e-06 26.1 10.8 3.2 8.5 0.0 7.1 7 0 0 7 7 7 1 Sel1 repeat TPR_5 PF12688.2 gi|20091093|ref|NP_617168.1| - 2.1e-05 24.5 5.1 0.94 9.5 0.0 5.7 4 3 0 4 4 4 1 Tetratrico peptide repeat TPR_3 PF07720.7 gi|20091093|ref|NP_617168.1| - 0.00039 20.1 10.8 5.6 6.8 0.0 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat Tcf25 PF04910.9 gi|20091093|ref|NP_617168.1| - 0.00056 18.9 0.6 4.8 6.0 0.0 4.5 2 1 3 5 5 5 0 Transcriptional repressor TCF25 PPR PF01535.15 gi|20091093|ref|NP_617168.1| - 0.00057 19.6 12.1 0.34 11.0 0.0 7.2 8 1 1 9 9 8 1 PPR repeat TPR_15 PF13429.1 gi|20091093|ref|NP_617168.1| - 0.0016 17.5 6.8 1.9 7.4 1.6 4.5 4 2 2 6 6 6 1 Tetratricopeptide repeat HHH_8 PF14716.1 gi|20091093|ref|NP_617168.1| - 0.019 15.1 1.1 77 3.5 0.0 4.7 4 1 1 5 5 4 0 Helix-hairpin-helix domain TPR_21 PF09976.4 gi|20091093|ref|NP_617168.1| - 0.02 14.8 1.7 4.2 7.2 0.8 3.8 4 1 1 5 5 4 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|20091093|ref|NP_617168.1| - 0.032 14.3 1.8 12 6.1 0.0 3.8 4 2 0 4 4 3 0 Tetratricopeptide repeat PPR_2 PF13041.1 gi|20091093|ref|NP_617168.1| - 0.045 13.7 1.0 27 4.8 0.0 4.7 5 0 0 5 5 4 0 PPR repeat family RNA_pol_Rpb6 PF01192.17 gi|20091093|ref|NP_617168.1| - 0.12 12.1 4.4 4.4 7.1 0.3 2.8 3 0 0 3 3 2 0 RNA polymerase Rpb6 Sec5 PF15469.1 gi|20091093|ref|NP_617168.1| - 0.24 11.1 5.0 12 5.5 0.0 4.1 4 2 0 4 4 4 0 Exocyst complex component Sec5 Vps39_1 PF10366.4 gi|20091093|ref|NP_617168.1| - 0.44 10.5 7.8 3.3 7.7 0.0 4.8 2 2 4 6 6 6 0 Vacuolar sorting protein 39 domain 1 Response_reg PF00072.19 gi|20091094|ref|NP_617169.1| - 1.7e-24 85.9 0.0 1.9e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF247 PF03140.10 gi|20091094|ref|NP_617169.1| - 0.13 11.2 0.0 0.14 11.1 0.0 1.0 1 0 0 1 1 1 0 Plant protein of unknown function Response_reg PF00072.19 gi|20091095|ref|NP_617170.1| - 8.7e-36 122.3 4.0 4.1e-17 62.2 1.1 2.7 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.21 gi|20091095|ref|NP_617170.1| - 1.4e-31 108.4 0.1 2.8e-31 107.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20091095|ref|NP_617170.1| - 5.9e-18 64.6 0.1 1.5e-17 63.3 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|20091095|ref|NP_617170.1| - 2.4e-16 58.9 0.0 4.8e-07 29.4 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_9 PF13426.1 gi|20091095|ref|NP_617170.1| - 6.8e-14 52.1 0.0 7.1e-06 26.3 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|20091095|ref|NP_617170.1| - 2.6e-12 46.5 0.2 6.8e-07 29.0 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|20091095|ref|NP_617170.1| - 2.8e-06 27.3 0.0 4.5e-05 23.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|20091095|ref|NP_617170.1| - 3.3e-05 23.8 0.0 0.017 15.1 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.1 gi|20091095|ref|NP_617170.1| - 0.017 14.7 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2328 PF10090.4 gi|20091095|ref|NP_617170.1| - 0.023 13.8 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2328) YmgB PF10798.3 gi|20091095|ref|NP_617170.1| - 0.03 14.1 0.2 0.081 12.7 0.1 1.7 1 0 0 1 1 1 0 Biofilm development protein YmgB/AriR DUF1725 PF08333.6 gi|20091095|ref|NP_617170.1| - 0.04 13.2 0.2 0.12 11.6 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) TaqI_C PF12950.2 gi|20091096|ref|NP_617171.1| - 0.00025 20.7 0.2 0.00025 20.7 0.1 2.3 3 0 0 3 3 3 1 TaqI-like C-terminal specificity domain DUF72 PF01904.13 gi|20091097|ref|NP_617172.1| - 2e-44 152.0 0.5 2.4e-44 151.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 TrkA_N PF02254.13 gi|20091098|ref|NP_617173.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain DUF3795 PF12675.2 gi|20091099|ref|NP_617174.1| - 3.5e-15 55.9 13.5 4.9e-15 55.4 9.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) DUF2173 PF09941.4 gi|20091101|ref|NP_617176.1| - 5.8e-38 129.1 0.5 6.4e-38 129.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) Proteasome_A_N PF10584.4 gi|20091101|ref|NP_617176.1| - 0.055 12.7 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature Robl_LC7 PF03259.12 gi|20091101|ref|NP_617176.1| - 0.061 12.8 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 Roadblock/LC7 domain MFS_1 PF07690.11 gi|20091102|ref|NP_617177.1| - 1.3e-30 106.2 62.8 3.6e-28 98.2 21.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|20091102|ref|NP_617177.1| - 2.7e-12 45.5 9.4 4.3e-12 44.9 6.5 1.3 1 1 0 1 1 1 1 Transmembrane secretion effector UDG PF03167.14 gi|20091103|ref|NP_617178.1| - 3.9e-05 23.1 0.0 4.5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HisKA_2 PF07568.7 gi|20091104|ref|NP_617179.1| - 1.4e-32 111.3 0.8 3.4e-32 110.1 0.6 1.7 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|20091104|ref|NP_617179.1| - 1e-13 50.9 0.1 2.1e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|20091104|ref|NP_617179.1| - 3.6e-13 49.2 0.0 1.3e-08 34.5 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|20091104|ref|NP_617179.1| - 1.1e-10 41.5 0.0 7.9e-09 35.5 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|20091104|ref|NP_617179.1| - 5e-09 36.4 0.0 7.5e-08 32.6 0.0 2.8 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|20091104|ref|NP_617179.1| - 1.7e-08 34.5 0.0 4.2e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|20091104|ref|NP_617179.1| - 5.4e-05 23.7 0.0 9.3e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|20091104|ref|NP_617179.1| - 7.6e-05 22.4 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|20091104|ref|NP_617179.1| - 0.00039 20.5 0.0 0.00069 19.7 0.0 1.4 1 0 0 1 1 1 1 GAF domain HWE_HK PF07536.9 gi|20091104|ref|NP_617179.1| - 0.00041 20.7 0.1 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 HWE histidine kinase PAS_3 PF08447.6 gi|20091104|ref|NP_617179.1| - 0.0026 17.8 0.0 0.006 16.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|20091104|ref|NP_617179.1| - 0.15 11.9 0.0 3.9 7.4 0.0 2.8 2 0 0 2 2 2 0 PAS domain HhH-GPD PF00730.20 gi|20091106|ref|NP_617181.1| - 1.2e-16 60.9 0.0 1.7e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|20091106|ref|NP_617181.1| - 4.3e-07 29.2 0.0 9.8e-07 28.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|20091106|ref|NP_617181.1| - 0.0014 18.7 0.0 0.0035 17.4 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|20091106|ref|NP_617181.1| - 0.011 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif RanGAP1_C PF07834.6 gi|20091106|ref|NP_617181.1| - 0.082 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 RanGAP1 C-terminal domain PsiE PF06146.7 gi|20091108|ref|NP_617183.1| - 6.1e-11 42.3 5.9 6.1e-11 42.3 4.1 2.0 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Phage_Coat_Gp8 PF05371.7 gi|20091108|ref|NP_617183.1| - 0.19 11.3 1.7 1 9.0 0.3 2.3 2 0 0 2 2 2 0 Phage major coat protein, Gp8 DUF3671 PF12420.3 gi|20091108|ref|NP_617183.1| - 6.2 6.8 8.9 17 5.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function Nitroreductase PF00881.19 gi|20091109|ref|NP_617184.1| - 4.3e-11 42.9 0.0 4.4e-07 29.8 0.0 2.6 2 1 0 2 2 2 2 Nitroreductase family MacB_PCD PF12704.2 gi|20091110|ref|NP_617185.1| - 1e-46 159.4 0.4 1e-46 159.4 0.3 3.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20091110|ref|NP_617185.1| - 2.2e-18 66.1 19.5 2.6e-18 65.9 9.4 2.3 2 0 0 2 2 2 1 FtsX-like permease family P_C PF06640.6 gi|20091110|ref|NP_617185.1| - 0.2 11.6 0.2 0.3 11.0 0.1 1.2 1 0 0 1 1 1 0 P protein C-terminus Yip1 PF04893.12 gi|20091110|ref|NP_617185.1| - 0.96 8.9 12.4 2.5 7.5 6.1 2.2 2 0 0 2 2 2 0 Yip1 domain NPCBM_assoc PF10633.4 gi|20091111|ref|NP_617186.1| - 9.3e-07 28.8 0.0 0.13 12.3 0.0 3.8 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2393 PF09624.5 gi|20091111|ref|NP_617186.1| - 0.0083 15.6 2.8 4.1 6.9 0.0 3.6 5 0 0 5 5 5 2 Protein of unknown function (DUF2393) Y_Y_Y PF07495.8 gi|20091111|ref|NP_617186.1| - 0.026 14.2 2.6 7.4 6.4 0.1 3.7 3 1 1 4 4 4 0 Y_Y_Y domain DUF11 PF01345.13 gi|20091111|ref|NP_617186.1| - 0.12 12.4 1.1 2.4 8.2 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|20091113|ref|NP_617188.1| - 2.8e-34 118.3 0.1 4.2e-34 117.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091113|ref|NP_617188.1| - 2.4e-08 34.3 0.0 1.9e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091113|ref|NP_617188.1| - 3.7e-06 26.3 0.8 5.8e-05 22.4 0.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20091113|ref|NP_617188.1| - 3e-05 23.4 0.4 7.4e-05 22.2 0.3 1.7 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|20091113|ref|NP_617188.1| - 3.1e-05 23.5 0.4 0.0027 17.1 0.2 2.2 1 1 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|20091113|ref|NP_617188.1| - 4.9e-05 23.3 0.1 0.00013 21.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|20091113|ref|NP_617188.1| - 0.00046 19.6 0.0 0.029 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20091113|ref|NP_617188.1| - 0.00079 18.6 0.1 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|20091113|ref|NP_617188.1| - 0.001 19.4 0.5 0.0031 17.8 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20091113|ref|NP_617188.1| - 0.0049 17.6 0.2 0.0092 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20091113|ref|NP_617188.1| - 0.0051 16.9 1.5 0.06 13.4 0.3 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|20091113|ref|NP_617188.1| - 0.01 14.9 0.0 2.7 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|20091113|ref|NP_617188.1| - 0.011 15.2 0.3 0.066 12.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|20091113|ref|NP_617188.1| - 0.04 13.4 0.1 3.2 7.1 0.1 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|20091113|ref|NP_617188.1| - 0.074 12.7 0.7 1.1 8.9 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B HTH_3 PF01381.17 gi|20091114|ref|NP_617189.1| - 4.8e-16 58.3 0.1 5.8e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|20091114|ref|NP_617189.1| - 1.2e-11 44.5 0.1 1.3e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|20091114|ref|NP_617189.1| - 5.4e-10 39.3 0.1 6.7e-10 39.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|20091114|ref|NP_617189.1| - 2.3e-07 30.8 0.0 2.9e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|20091114|ref|NP_617189.1| - 0.0021 17.8 0.0 0.0032 17.2 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20091114|ref|NP_617189.1| - 0.0056 16.4 0.0 0.0098 15.6 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_25 PF13413.1 gi|20091114|ref|NP_617189.1| - 0.053 13.1 0.0 0.08 12.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|20091114|ref|NP_617189.1| - 0.098 11.9 0.1 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1616 PF07760.6 gi|20091115|ref|NP_617190.1| - 0.012 14.8 5.0 0.015 14.4 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) Cation_ATPase_C PF00689.16 gi|20091115|ref|NP_617190.1| - 0.032 13.7 6.9 0.047 13.2 4.7 1.3 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus PIG-Y PF15159.1 gi|20091115|ref|NP_617190.1| - 0.079 13.1 0.6 0.079 13.1 0.4 2.7 3 0 0 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y Polysacc_synt PF01943.12 gi|20091115|ref|NP_617190.1| - 0.43 9.7 18.8 0.02 14.1 2.9 2.0 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein Orai-1 PF07856.7 gi|20091115|ref|NP_617190.1| - 0.81 9.2 12.7 1 8.9 3.7 2.1 1 1 1 2 2 2 0 Mediator of CRAC channel activity Transmemb_17 PF09799.4 gi|20091115|ref|NP_617190.1| - 1.3 9.3 11.8 2.5 8.4 8.2 1.5 1 1 0 1 1 1 0 Predicted membrane protein DUF4190 PF13828.1 gi|20091115|ref|NP_617190.1| - 1.9 8.0 8.4 0.63 9.6 2.5 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) PIRT PF15099.1 gi|20091115|ref|NP_617190.1| - 2.2 7.4 4.7 4.8 6.4 3.2 1.6 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family DUF3165 PF11364.3 gi|20091115|ref|NP_617190.1| - 6.3 7.0 13.4 2.9 8.0 2.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3165) DUF423 PF04241.10 gi|20091115|ref|NP_617190.1| - 7.8 6.4 8.7 11 5.9 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF423) Pirin_C PF05726.8 gi|20091116|ref|NP_617191.1| - 3e-38 130.0 0.0 1.1e-36 125.0 0.0 2.2 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Pirin PF02678.11 gi|20091116|ref|NP_617191.1| - 4.7e-37 126.1 0.1 7.3e-37 125.5 0.0 1.3 1 0 0 1 1 1 1 Pirin Cupin_2 PF07883.6 gi|20091116|ref|NP_617191.1| - 9.9e-05 21.7 1.0 0.014 14.8 0.1 3.0 3 0 0 3 3 3 1 Cupin domain Cupin_3 PF05899.7 gi|20091116|ref|NP_617191.1| - 0.099 12.0 0.2 0.92 8.9 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF861) Virul_fac_BrkB PF03631.10 gi|20091117|ref|NP_617192.1| - 9.4e-54 182.4 18.0 1.1e-53 182.3 12.5 1.0 1 0 0 1 1 1 1 Virulence factor BrkB SBP_bac_11 PF13531.1 gi|20091118|ref|NP_617193.1| - 2.7e-60 203.8 0.1 3.1e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|20091118|ref|NP_617193.1| - 2.3e-22 80.1 0.3 1.4e-10 41.4 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|20091118|ref|NP_617193.1| - 8.6e-07 28.5 0.0 1.6e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|20091118|ref|NP_617193.1| - 9.3e-07 27.9 0.0 3.7e-06 26.0 0.0 1.9 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.1 gi|20091118|ref|NP_617193.1| - 7.5e-06 25.8 0.1 0.0076 16.0 0.0 2.3 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|20091118|ref|NP_617193.1| - 3.5e-05 23.3 0.0 4.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like_2 PF12849.2 gi|20091118|ref|NP_617193.1| - 9e-05 22.0 3.0 0.0016 17.9 0.3 2.1 1 1 1 2 2 2 2 PBP superfamily domain BPD_transp_1 PF00528.17 gi|20091119|ref|NP_617194.1| - 9.6e-21 74.1 15.7 9.6e-21 74.1 10.9 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|20091120|ref|NP_617195.1| - 1.7e-33 115.8 0.0 3.6e-33 114.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091120|ref|NP_617195.1| - 6.6e-11 42.6 1.6 0.00019 21.5 0.1 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20091120|ref|NP_617195.1| - 1.9e-07 30.5 0.1 1.5e-06 27.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20091120|ref|NP_617195.1| - 7.4e-07 29.6 0.2 1.2e-06 28.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20091120|ref|NP_617195.1| - 0.00029 20.3 0.1 0.00088 18.7 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|20091120|ref|NP_617195.1| - 0.0009 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_15 PF13175.1 gi|20091120|ref|NP_617195.1| - 0.001 18.2 1.0 0.038 13.0 0.3 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|20091120|ref|NP_617195.1| - 0.0015 17.7 0.0 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|20091120|ref|NP_617195.1| - 0.0022 18.1 0.4 0.052 13.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|20091120|ref|NP_617195.1| - 0.0026 17.6 0.5 0.1 12.4 0.2 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit TOBE PF03459.12 gi|20091120|ref|NP_617195.1| - 0.0033 17.4 0.0 0.46 10.6 0.0 2.5 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.5 gi|20091120|ref|NP_617195.1| - 0.012 15.6 0.0 0.033 14.1 0.0 1.8 2 0 0 2 2 1 0 TOBE domain AAA_33 PF13671.1 gi|20091120|ref|NP_617195.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RHH_3 PF12651.2 gi|20091120|ref|NP_617195.1| - 0.02 14.5 0.1 0.053 13.2 0.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix domain AAA_16 PF13191.1 gi|20091120|ref|NP_617195.1| - 0.02 14.8 0.1 0.07 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|20091120|ref|NP_617195.1| - 0.028 15.2 2.3 0.21 12.3 0.6 2.6 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|20091120|ref|NP_617195.1| - 0.028 14.5 0.2 0.13 12.4 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|20091120|ref|NP_617195.1| - 0.038 13.6 0.0 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|20091120|ref|NP_617195.1| - 0.046 13.1 0.1 0.099 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA-like domain PEPCK_ATP PF01293.15 gi|20091120|ref|NP_617195.1| - 0.047 12.2 0.1 0.07 11.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_19 PF13245.1 gi|20091120|ref|NP_617195.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain PduV-EutP PF10662.4 gi|20091120|ref|NP_617195.1| - 0.054 12.9 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.12 gi|20091120|ref|NP_617195.1| - 0.08 12.3 0.0 0.2 11.0 0.0 1.6 2 0 0 2 2 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|20091120|ref|NP_617195.1| - 0.095 11.8 0.0 0.27 10.3 0.0 1.7 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|20091120|ref|NP_617195.1| - 0.11 12.7 0.2 0.39 11.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|20091120|ref|NP_617195.1| - 0.12 11.7 0.3 0.85 9.0 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|20091120|ref|NP_617195.1| - 0.12 11.7 0.0 1.2 8.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.1 gi|20091120|ref|NP_617195.1| - 0.12 11.8 0.1 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|20091120|ref|NP_617195.1| - 0.14 11.0 0.1 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Isochorismatase PF00857.15 gi|20091121|ref|NP_617196.1| - 1.1e-39 136.1 0.1 1.2e-39 136.0 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family HAD_2 PF13419.1 gi|20091121|ref|NP_617196.1| - 0.036 14.2 0.0 2.1 8.5 0.0 2.4 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Kelch_4 PF13418.1 gi|20091122|ref|NP_617197.1| - 1.7e-07 30.9 12.8 2.7 7.8 0.0 9.7 9 0 0 9 9 9 4 Galactose oxidase, central domain PKD PF00801.15 gi|20091122|ref|NP_617197.1| - 2e-07 30.6 1.1 5.1e-07 29.3 0.8 1.7 1 0 0 1 1 1 1 PKD domain MscL PF01741.13 gi|20091123|ref|NP_617198.1| - 5.6e-20 71.7 3.6 6.2e-20 71.6 2.5 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL SNARE_assoc PF09335.6 gi|20091123|ref|NP_617198.1| - 0.006 16.7 0.5 0.01 16.0 0.4 1.6 1 1 0 1 1 1 1 SNARE associated Golgi protein TraL PF07178.6 gi|20091123|ref|NP_617198.1| - 0.23 11.4 2.7 2.3 8.3 0.1 2.1 2 0 0 2 2 2 0 TraL protein AA_permease_2 PF13520.1 gi|20091124|ref|NP_617199.1| - 3.1e-33 114.9 46.2 6.4e-33 113.9 32.0 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|20091124|ref|NP_617199.1| - 1.2e-29 103.0 39.1 1.7e-29 102.5 27.1 1.2 1 0 0 1 1 1 1 Amino acid permease Npa1 PF11707.3 gi|20091125|ref|NP_617200.1| - 0.24 10.3 0.0 0.35 9.8 0.0 1.1 1 0 0 1 1 1 0 Ribosome 60S biogenesis N-terminal CMD PF02627.15 gi|20091127|ref|NP_617202.1| - 8.8e-15 54.3 0.1 9.9e-15 54.1 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1330 PF07045.6 gi|20091128|ref|NP_617203.1| - 4.1e-21 74.6 0.0 4.9e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1330) DUF1563 PF07599.6 gi|20091128|ref|NP_617203.1| - 0.065 13.1 1.4 1.7 8.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1563) Aldo_ket_red PF00248.16 gi|20091129|ref|NP_617204.1| - 2.9e-46 157.5 0.0 3.6e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|20091129|ref|NP_617204.1| - 5.2e-11 42.7 7.0 1.1e-10 41.6 4.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091129|ref|NP_617204.1| - 1.5e-09 38.0 9.1 2.7e-09 37.1 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20091129|ref|NP_617204.1| - 2.6e-08 33.7 7.4 5e-08 32.8 5.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091129|ref|NP_617204.1| - 1.9e-06 28.2 1.1 0.0022 18.3 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20091129|ref|NP_617204.1| - 0.00026 20.7 12.1 0.0047 16.7 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091129|ref|NP_617204.1| - 0.00031 21.4 3.7 0.054 14.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|20091129|ref|NP_617204.1| - 0.00059 19.4 1.5 0.0049 16.4 0.0 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|20091129|ref|NP_617204.1| - 0.00069 19.4 6.9 0.042 13.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20091129|ref|NP_617204.1| - 0.00097 18.6 2.0 0.00097 18.6 1.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20091129|ref|NP_617204.1| - 0.086 12.8 11.5 0.12 12.3 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20091129|ref|NP_617204.1| - 0.16 12.3 14.1 1.4 9.3 10.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Med27 PF11571.3 gi|20091129|ref|NP_617204.1| - 0.18 11.9 2.4 7.3 6.8 0.1 2.4 2 0 0 2 2 2 0 Mediator complex subunit 27 Fer4_4 PF12800.2 gi|20091129|ref|NP_617204.1| - 0.59 10.6 14.1 0.38 11.2 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20091129|ref|NP_617204.1| - 4 7.4 12.7 0.064 13.1 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20091129|ref|NP_617204.1| - 4.4 7.9 6.8 2.4 8.8 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Aldo_ket_red PF00248.16 gi|20091130|ref|NP_617205.1| - 8.6e-46 156.0 0.0 1.1e-45 155.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|20091130|ref|NP_617205.1| - 1.1e-11 44.9 9.7 2.1e-11 43.9 6.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091130|ref|NP_617205.1| - 7.9e-07 29.2 11.5 1.4e-06 28.4 8.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091130|ref|NP_617205.1| - 8.9e-07 29.2 2.2 0.00042 20.6 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20091130|ref|NP_617205.1| - 1.7e-05 24.7 10.0 3e-05 23.9 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|20091130|ref|NP_617205.1| - 0.00076 19.0 0.1 0.00076 19.0 0.1 1.9 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|20091130|ref|NP_617205.1| - 0.0018 17.7 3.4 0.0018 17.7 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20091130|ref|NP_617205.1| - 0.0052 17.4 3.9 0.038 14.7 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20091130|ref|NP_617205.1| - 0.0084 15.9 5.7 0.34 10.8 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20091130|ref|NP_617205.1| - 0.013 15.2 2.5 0.013 15.2 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20091130|ref|NP_617205.1| - 0.031 14.1 2.2 0.031 14.1 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain PA_decarbox PF05870.6 gi|20091130|ref|NP_617205.1| - 0.031 13.7 0.0 0.83 9.1 0.0 2.3 2 0 0 2 2 2 0 Phenolic acid decarboxylase (PAD) Fer4_4 PF12800.2 gi|20091130|ref|NP_617205.1| - 0.66 10.4 15.3 1 9.8 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20091130|ref|NP_617205.1| - 2.7 8.4 16.5 0.63 10.4 3.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091130|ref|NP_617205.1| - 2.9 8.0 16.2 0.5 10.3 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain HATPase_c PF02518.21 gi|20091132|ref|NP_617207.1| - 1.5e-29 101.9 0.2 4.9e-29 100.2 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20091132|ref|NP_617207.1| - 2.9e-25 88.6 0.1 2.4e-16 60.0 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|20091132|ref|NP_617207.1| - 5e-20 71.3 0.1 2e-11 43.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|20091132|ref|NP_617207.1| - 5.6e-19 67.8 0.0 1.3e-18 66.7 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|20091132|ref|NP_617207.1| - 4.6e-15 54.8 0.2 5.1e-07 29.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|20091132|ref|NP_617207.1| - 6.6e-14 51.7 0.0 1.5e-12 47.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|20091132|ref|NP_617207.1| - 1.3e-11 44.5 0.0 8.7e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|20091132|ref|NP_617207.1| - 7e-09 35.6 0.0 5.8e-08 32.6 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|20091132|ref|NP_617207.1| - 7.5e-05 22.3 0.1 0.00035 20.2 0.0 2.1 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.1 gi|20091132|ref|NP_617207.1| - 0.00076 19.1 0.1 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|20091132|ref|NP_617207.1| - 0.00098 19.2 0.0 0.0018 18.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|20091132|ref|NP_617207.1| - 0.0019 18.3 0.0 0.012 15.7 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|20091132|ref|NP_617207.1| - 0.0045 16.9 0.2 0.052 13.5 0.0 2.8 2 2 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|20091132|ref|NP_617207.1| - 0.067 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain RBB1NT PF08169.6 gi|20091132|ref|NP_617207.1| - 0.078 12.9 0.6 0.41 10.6 0.1 2.3 2 0 0 2 2 2 0 RBB1NT (NUC162) domain GAF_2 PF13185.1 gi|20091132|ref|NP_617207.1| - 0.088 13.3 0.0 0.25 11.8 0.0 1.8 2 0 0 2 2 1 0 GAF domain Flavin_Reduct PF01613.13 gi|20091133|ref|NP_617208.1| - 7.2e-29 100.6 0.0 8.1e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF4235 PF14019.1 gi|20091134|ref|NP_617209.1| - 0.084 12.7 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4235) 5TM-5TMR_LYT PF07694.7 gi|20091134|ref|NP_617209.1| - 0.28 10.4 3.2 0.44 9.8 2.2 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT Big_5 PF13205.1 gi|20091135|ref|NP_617210.1| - 3.8e-05 24.2 0.0 6.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain DUF2076 PF09849.4 gi|20091135|ref|NP_617210.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Excalibur PF05901.6 gi|20091135|ref|NP_617210.1| - 0.28 11.5 1.5 0.32 11.3 0.2 1.8 2 0 0 2 2 2 0 Excalibur calcium-binding domain Big_5 PF13205.1 gi|20091137|ref|NP_617212.1| - 3.4e-06 27.6 0.0 4.4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain Hydantoinase_B PF02538.9 gi|20091138|ref|NP_617213.1| - 3.9e-212 705.1 0.0 5.2e-212 704.7 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|20091138|ref|NP_617213.1| - 6.6e-129 429.1 0.4 2.6e-128 427.1 0.2 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20091138|ref|NP_617213.1| - 1.8e-59 200.1 0.0 1e-57 194.4 0.0 2.8 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region LRR_4 PF12799.2 gi|20091139|ref|NP_617214.1| - 1.5e-46 155.3 68.5 1e-11 44.1 2.6 7.4 2 2 5 7 7 7 7 Leucine Rich repeats (2 copies) LRR_8 PF13855.1 gi|20091139|ref|NP_617214.1| - 1.9e-36 123.5 107.3 1.9e-10 40.3 2.7 5.2 1 1 7 8 8 8 8 Leucine rich repeat LRR_7 PF13504.1 gi|20091139|ref|NP_617214.1| - 1.9e-25 84.3 59.6 0.0059 16.6 0.7 11.9 11 0 0 11 11 11 9 Leucine rich repeat LRR_1 PF00560.28 gi|20091139|ref|NP_617214.1| - 2.1e-25 84.8 48.0 0.0023 17.7 0.2 11.7 11 0 0 11 11 11 9 Leucine Rich Repeat Ras PF00071.17 gi|20091139|ref|NP_617214.1| - 6.8e-21 74.3 0.1 1.2e-20 73.5 0.1 1.4 1 0 0 1 1 1 1 Ras family LRR_6 PF13516.1 gi|20091139|ref|NP_617214.1| - 4.8e-17 60.0 58.6 0.01 15.8 0.4 11.8 11 0 0 11 11 11 8 Leucine Rich repeat Miro PF08477.8 gi|20091139|ref|NP_617214.1| - 3.7e-16 59.6 0.0 9.2e-16 58.4 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|20091139|ref|NP_617214.1| - 1.3e-07 31.0 0.1 3e-07 29.8 0.1 1.6 1 0 0 1 1 1 1 ADP-ribosylation factor family Gtr1_RagA PF04670.7 gi|20091139|ref|NP_617214.1| - 0.00021 20.5 0.0 0.00034 19.8 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region KKLCAg1 PF15204.1 gi|20091139|ref|NP_617214.1| - 0.0025 17.8 8.0 0.98 9.5 0.0 4.8 2 2 3 5 5 5 1 Kita-kyushu lung cancer antigen 1 PduV-EutP PF10662.4 gi|20091139|ref|NP_617214.1| - 0.011 15.2 0.0 0.6 9.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF2322 PF10084.4 gi|20091139|ref|NP_617214.1| - 0.025 14.2 0.8 5.7 6.7 0.0 3.6 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2322) CSTF_C PF14304.1 gi|20091139|ref|NP_617214.1| - 8.6 5.7 9.0 53 3.2 0.1 4.6 5 0 0 5 5 5 0 Transcription termination and cleavage factor C-terminal IF-2 PF11987.3 gi|20091140|ref|NP_617215.1| - 0.0056 16.5 0.4 0.014 15.2 0.3 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 DUF4404 PF14357.1 gi|20091140|ref|NP_617215.1| - 0.011 16.1 3.5 0.028 14.8 1.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) LsmAD PF06741.8 gi|20091140|ref|NP_617215.1| - 0.024 14.7 1.7 0.07 13.2 1.2 1.8 1 0 0 1 1 1 0 LsmAD domain ACT_4 PF13291.1 gi|20091140|ref|NP_617215.1| - 0.082 13.2 0.5 0.082 13.2 0.3 2.4 3 0 0 3 3 3 0 ACT domain Rota_NSP3 PF01665.11 gi|20091140|ref|NP_617215.1| - 0.085 11.7 3.8 0.056 12.3 0.5 2.0 1 1 1 2 2 2 0 Rotavirus non-structural protein NSP3 DUF3829 PF12889.2 gi|20091140|ref|NP_617215.1| - 0.18 10.9 4.7 0.8 8.8 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) ACT PF01842.20 gi|20091140|ref|NP_617215.1| - 0.21 11.1 3.0 0.58 9.7 0.1 2.9 3 0 0 3 3 3 0 ACT domain SSP160 PF06933.6 gi|20091141|ref|NP_617216.1| - 0.032 12.2 17.8 0.045 11.7 12.3 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Aminotran_5 PF00266.14 gi|20091142|ref|NP_617217.1| - 2.2e-06 26.6 0.0 2.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V HNH_3 PF13392.1 gi|20091142|ref|NP_617217.1| - 0.0076 15.6 0.0 0.044 13.1 0.0 2.1 2 0 0 2 2 2 1 HNH endonuclease NPV_P10 PF05531.7 gi|20091143|ref|NP_617218.1| - 0.0058 16.8 0.3 0.012 15.8 0.2 1.6 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|20091143|ref|NP_617218.1| - 0.017 14.9 0.2 0.019 14.8 0.1 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ALIX_LYPXL_bnd PF13949.1 gi|20091143|ref|NP_617218.1| - 0.073 12.0 0.4 0.081 11.8 0.3 1.0 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV HHH_3 PF12836.2 gi|20091145|ref|NP_617220.1| - 1.6e-07 31.1 0.0 4e-06 26.6 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|20091145|ref|NP_617220.1| - 0.022 14.9 1.2 0.6 10.3 0.6 2.9 1 1 1 2 2 2 0 Helix-hairpin-helix domain HHH PF00633.18 gi|20091145|ref|NP_617220.1| - 0.065 12.9 0.1 15 5.5 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif RhoGEF PF00621.15 gi|20091145|ref|NP_617220.1| - 0.2 11.5 0.1 0.35 10.7 0.1 1.4 1 0 0 1 1 1 0 RhoGEF domain DUF134 PF02001.11 gi|20091146|ref|NP_617221.1| - 0.0061 16.4 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 TPR_11 PF13414.1 gi|20091147|ref|NP_617222.1| - 4.8e-45 151.0 18.8 6.9e-15 54.4 0.6 4.4 2 2 3 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|20091147|ref|NP_617222.1| - 2.8e-44 146.9 14.3 5e-09 35.3 0.0 6.7 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20091147|ref|NP_617222.1| - 1e-41 137.4 10.6 1.4e-07 30.8 0.1 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20091147|ref|NP_617222.1| - 4.4e-26 90.9 1.9 2.3e-08 34.4 0.0 4.3 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20091147|ref|NP_617222.1| - 6.4e-26 88.1 16.6 2.1e-05 23.9 0.0 6.9 5 1 2 7 7 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20091147|ref|NP_617222.1| - 7.4e-22 77.0 7.2 5.5e-07 29.4 0.1 4.4 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20091147|ref|NP_617222.1| - 8.7e-22 75.4 10.9 3e-06 27.0 0.0 6.9 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20091147|ref|NP_617222.1| - 1.2e-17 62.7 0.6 0.00053 20.4 0.0 5.0 3 2 3 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20091147|ref|NP_617222.1| - 3.3e-17 60.8 3.3 0.00023 20.7 0.1 6.0 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20091147|ref|NP_617222.1| - 8.2e-14 51.7 6.1 1.5e-05 25.2 1.1 4.3 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20091147|ref|NP_617222.1| - 1e-13 50.8 0.2 0.0013 18.5 0.0 4.1 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20091147|ref|NP_617222.1| - 3.7e-12 45.8 7.2 0.22 12.0 0.0 5.8 6 0 0 6 6 5 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|20091147|ref|NP_617222.1| - 4.1e-12 46.0 5.3 2.8e-06 27.3 1.5 3.5 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 Peptidase_S8 PF00082.17 gi|20091147|ref|NP_617222.1| - 1.1e-10 41.0 0.0 1.8e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Subtilase family Fis1_TPR_C PF14853.1 gi|20091147|ref|NP_617222.1| - 1.7e-07 31.0 4.0 0.14 12.0 0.1 4.4 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|20091147|ref|NP_617222.1| - 0.00018 21.3 0.7 7.1 6.7 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.13 gi|20091147|ref|NP_617222.1| - 0.00092 19.0 7.8 0.13 12.1 0.4 4.6 4 1 0 4 4 4 1 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|20091147|ref|NP_617222.1| - 0.0016 17.3 1.2 0.11 11.1 0.0 2.9 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 RPN7 PF10602.4 gi|20091147|ref|NP_617222.1| - 0.0032 16.8 0.5 0.32 10.3 0.0 3.1 3 0 0 3 3 3 1 26S proteasome subunit RPN7 TPR_15 PF13429.1 gi|20091147|ref|NP_617222.1| - 0.0049 15.9 1.8 4.4 6.2 0.0 3.5 1 1 0 3 3 3 1 Tetratricopeptide repeat PPR PF01535.15 gi|20091147|ref|NP_617222.1| - 0.0092 15.8 1.6 16 5.7 0.1 4.1 4 0 0 4 4 4 0 PPR repeat DUF3856 PF12968.2 gi|20091147|ref|NP_617222.1| - 0.028 14.2 1.7 1.1 9.0 0.0 3.3 3 1 0 3 3 3 0 Domain of Unknown Function (DUF3856) Sel1 PF08238.7 gi|20091147|ref|NP_617222.1| - 1.8 9.3 6.4 23 5.8 0.1 3.9 5 0 0 5 5 3 0 Sel1 repeat Adenine_deam_C PF13382.1 gi|20091148|ref|NP_617223.1| - 7.6e-60 200.9 0.1 1.2e-59 200.2 0.1 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|20091148|ref|NP_617223.1| - 4.8e-24 85.6 0.0 6e-22 78.7 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|20091148|ref|NP_617223.1| - 7.5e-12 45.8 0.0 2.8e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|20091148|ref|NP_617223.1| - 1.5e-07 31.0 0.3 5.2e-07 29.3 0.2 1.9 1 0 0 1 1 1 1 Amidohydrolase DUF2121 PF09894.4 gi|20091149|ref|NP_617224.1| - 1e-73 246.7 5.1 1.2e-73 246.5 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) Proteasome PF00227.21 gi|20091149|ref|NP_617224.1| - 0.0041 16.4 0.1 0.3 10.3 0.0 2.2 2 0 0 2 2 2 2 Proteasome subunit GxGYxYP PF14323.1 gi|20091149|ref|NP_617224.1| - 0.047 12.4 0.1 0.1 11.2 0.0 1.6 2 0 0 2 2 2 0 GxGYxY sequence motif in domain of unknown function Polysacc_synt PF01943.12 gi|20091151|ref|NP_617226.1| - 5.5e-34 117.6 23.9 1.2e-33 116.5 16.6 1.6 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|20091151|ref|NP_617226.1| - 5.7e-17 61.8 37.1 2.8e-14 53.1 5.9 3.4 3 0 0 3 3 3 3 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|20091151|ref|NP_617226.1| - 8.8e-17 61.3 17.1 8.8e-17 61.3 11.8 2.9 1 1 1 3 3 3 2 Polysaccharide biosynthesis protein MatE PF01554.13 gi|20091151|ref|NP_617226.1| - 3.1e-15 56.1 25.9 6.5e-11 42.1 7.9 2.7 2 0 0 2 2 2 2 MatE MVIN PF03023.9 gi|20091151|ref|NP_617226.1| - 2e-07 29.8 27.0 3.6e-07 28.9 18.7 1.4 1 0 0 1 1 1 1 MviN-like protein DUF1015 PF06245.6 gi|20091155|ref|NP_617230.1| - 4.9e-60 203.1 0.0 7.6e-60 202.5 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1015) Rhodanese PF00581.15 gi|20091156|ref|NP_617231.1| - 1.8e-26 92.7 0.1 1.1e-18 67.6 0.1 2.6 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|20091156|ref|NP_617231.1| - 8.7e-15 54.8 1.5 1.2e-14 54.3 0.5 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily WLM PF08325.5 gi|20091157|ref|NP_617232.1| - 0.045 13.6 0.1 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 WLM domain Hexokinase_1 PF00349.16 gi|20091157|ref|NP_617232.1| - 0.075 12.3 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Hexokinase DUF4157 PF13699.1 gi|20091157|ref|NP_617232.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) HCaRG PF07258.9 gi|20091158|ref|NP_617233.1| - 0.016 14.7 0.6 0.062 12.8 0.3 1.8 1 1 1 2 2 2 0 HCaRG protein MORN_2 PF07661.8 gi|20091159|ref|NP_617234.1| - 0.00068 19.3 0.0 19 5.6 0.0 5.5 7 0 0 7 7 7 2 MORN repeat variant UPF0047 PF01894.12 gi|20091160|ref|NP_617235.1| - 1.6e-32 111.8 0.1 1.8e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 YbaB_DNA_bd PF02575.11 gi|20091160|ref|NP_617235.1| - 0.25 11.2 1.2 5.5 6.9 0.1 2.1 1 1 1 2 2 2 0 YbaB/EbfC DNA-binding family DUF1254 PF06863.7 gi|20091161|ref|NP_617236.1| - 1.1e-36 125.5 0.5 3.2e-36 123.9 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1254) DUF1214 PF06742.6 gi|20091161|ref|NP_617236.1| - 1.3e-27 96.3 1.3 9.8e-27 93.4 0.2 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1214) YflT PF11181.3 gi|20091161|ref|NP_617236.1| - 0.0042 17.1 0.2 1.4 9.1 0.0 2.3 2 0 0 2 2 2 2 Heat induced stress protein YflT DUF1269 PF06897.7 gi|20091161|ref|NP_617236.1| - 0.017 15.1 0.4 0.11 12.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1269) PQQ_2 PF13360.1 gi|20091162|ref|NP_617237.1| - 7.2e-06 25.6 1.4 0.078 12.4 0.2 2.5 2 1 0 2 2 2 2 PQQ-like domain DUF4341 PF14241.1 gi|20091163|ref|NP_617238.1| - 0.089 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4341) DUF2795 PF11387.3 gi|20091166|ref|NP_617241.1| - 3.6e-39 132.3 1.0 1.1e-18 66.7 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2795) PTS_IIA PF02255.11 gi|20091166|ref|NP_617241.1| - 0.0015 18.3 0.7 1.8 8.5 0.0 3.3 1 1 3 4 4 4 1 PTS system, Lactose/Cellobiose specific IIA subunit HEAT_2 PF13646.1 gi|20091166|ref|NP_617241.1| - 0.0016 18.7 0.3 0.19 12.0 0.0 2.3 1 1 1 2 2 2 2 HEAT repeats phage_tail_N PF08400.5 gi|20091166|ref|NP_617241.1| - 0.0026 17.4 0.2 1.6 8.4 0.1 2.7 1 1 1 2 2 2 2 Prophage tail fibre N-terminal Ish1 PF10281.4 gi|20091166|ref|NP_617241.1| - 0.0052 16.8 0.1 1.6 8.8 0.0 2.4 2 0 0 2 2 2 1 Putative stress-responsive nuclear envelope protein HTH_Tnp_Tc5 PF03221.11 gi|20091166|ref|NP_617241.1| - 0.0053 16.5 0.6 0.93 9.3 0.1 2.2 2 0 0 2 2 2 1 Tc5 transposase DNA-binding domain Ndc80_HEC PF03801.8 gi|20091166|ref|NP_617241.1| - 0.019 14.4 0.0 4.4 6.7 0.0 2.2 2 0 0 2 2 2 0 HEC/Ndc80p family Stanniocalcin PF03298.8 gi|20091166|ref|NP_617241.1| - 0.029 13.3 0.0 0.86 8.5 0.0 2.0 1 1 1 2 2 2 0 Stanniocalcin family HEAT_PBS PF03130.11 gi|20091166|ref|NP_617241.1| - 0.036 14.5 0.0 8.9 7.1 0.0 3.3 3 1 1 4 4 4 0 PBS lyase HEAT-like repeat Drf_FH3 PF06367.11 gi|20091166|ref|NP_617241.1| - 0.053 12.9 0.2 0.097 12.0 0.1 1.7 1 1 0 1 1 1 0 Diaphanous FH3 Domain Flu_M1_C PF08289.6 gi|20091166|ref|NP_617241.1| - 0.088 12.8 1.5 1.1 9.3 0.0 2.3 1 1 1 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain 5_3_exonuc PF01367.15 gi|20091166|ref|NP_617241.1| - 0.12 12.6 0.1 0.21 11.8 0.1 1.5 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Syntaxin-6_N PF09177.6 gi|20091166|ref|NP_617241.1| - 0.14 12.5 1.1 1.3 9.4 0.7 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal ATP-synt_G PF04718.10 gi|20091166|ref|NP_617241.1| - 0.15 12.7 0.8 2.4 8.8 0.1 2.1 2 0 0 2 2 2 0 Mitochondrial ATP synthase g subunit DUF349 PF03993.7 gi|20091166|ref|NP_617241.1| - 0.15 12.2 3.4 0.77 9.9 0.3 2.6 1 1 1 2 2 2 0 Domain of Unknown Function (DUF349) Trypsin PF00089.21 gi|20091167|ref|NP_617242.1| - 0.0018 17.8 0.1 0.022 14.3 0.1 2.1 1 1 0 2 2 2 1 Trypsin Trypsin_2 PF13365.1 gi|20091167|ref|NP_617242.1| - 0.0036 17.2 0.1 0.0076 16.2 0.0 1.6 1 1 0 1 1 1 1 Trypsin-like peptidase domain Peptidase_S32 PF05579.8 gi|20091167|ref|NP_617242.1| - 0.0078 15.2 0.0 0.019 13.9 0.0 1.6 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Peptidase_S55 PF05580.7 gi|20091167|ref|NP_617242.1| - 0.048 13.1 0.2 0.075 12.4 0.2 1.2 1 0 0 1 1 1 0 SpoIVB peptidase S55 Peptidase_S7 PF00949.16 gi|20091167|ref|NP_617242.1| - 0.13 11.6 0.1 0.21 11.0 0.1 1.3 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Methyltransf_11 PF08241.7 gi|20091168|ref|NP_617243.1| - 3.8e-20 72.1 0.0 1.1e-19 70.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091168|ref|NP_617243.1| - 1.5e-18 66.7 0.0 4.1e-18 65.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091168|ref|NP_617243.1| - 2.3e-16 59.6 0.0 3.8e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|20091168|ref|NP_617243.1| - 3.6e-14 53.0 0.0 1.1e-13 51.5 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091168|ref|NP_617243.1| - 1.1e-13 51.2 0.0 1.9e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091168|ref|NP_617243.1| - 2.1e-12 47.6 0.1 6.4e-12 46.0 0.0 1.9 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091168|ref|NP_617243.1| - 6.8e-11 42.4 0.0 1.4e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20091168|ref|NP_617243.1| - 1e-08 35.2 0.0 3.1e-08 33.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20091168|ref|NP_617243.1| - 1.2e-06 28.1 0.0 2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|20091168|ref|NP_617243.1| - 0.00015 21.2 0.0 0.00041 19.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|20091168|ref|NP_617243.1| - 0.00035 19.6 0.0 0.00084 18.4 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|20091168|ref|NP_617243.1| - 0.00048 19.2 0.1 0.00069 18.7 0.1 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.12 gi|20091168|ref|NP_617243.1| - 0.00068 18.7 0.0 0.00096 18.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|20091168|ref|NP_617243.1| - 0.009 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.1 gi|20091168|ref|NP_617243.1| - 0.044 14.6 0.0 0.079 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|20091168|ref|NP_617243.1| - 0.081 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin TehB PF03848.9 gi|20091168|ref|NP_617243.1| - 0.091 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB PKD PF00801.15 gi|20091170|ref|NP_617245.1| - 2.2e-41 139.4 31.4 2.8e-15 55.8 3.4 3.6 3 0 0 3 3 3 3 PKD domain Polysacc_deac_1 PF01522.16 gi|20091170|ref|NP_617245.1| - 1.1e-10 41.2 0.0 3.2e-10 39.6 0.0 1.8 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.4 gi|20091170|ref|NP_617245.1| - 9.7e-07 28.4 0.1 2.1e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF2194 PF09960.4 gi|20091170|ref|NP_617245.1| - 0.0049 14.9 0.3 0.016 13.2 0.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2194) A2M_N PF01835.14 gi|20091170|ref|NP_617245.1| - 0.013 15.7 3.1 0.22 11.8 0.4 3.5 3 1 1 4 4 4 0 MG2 domain DUF943 PF06092.7 gi|20091170|ref|NP_617245.1| - 0.017 14.4 0.7 8.1 5.7 0.0 3.3 3 0 0 3 3 3 0 Enterobacterial putative membrane protein (DUF943) Disaggr_assoc PF08480.5 gi|20091172|ref|NP_617247.1| - 2.1e-82 275.3 13.0 2.1e-82 275.3 9.0 3.4 3 0 0 3 3 3 2 Disaggregatase related Beta_helix PF13229.1 gi|20091172|ref|NP_617247.1| - 2.5e-16 59.8 90.0 5.9e-10 39.1 17.9 4.2 3 1 2 5 5 5 3 Right handed beta helix region Acetyltransf_1 PF00583.19 gi|20091173|ref|NP_617248.1| - 1.8e-10 40.7 0.0 2.4e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20091173|ref|NP_617248.1| - 5.9e-05 23.1 0.0 9.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20091173|ref|NP_617248.1| - 0.00024 20.7 0.0 0.0003 20.4 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|20091173|ref|NP_617248.1| - 0.00036 20.3 0.0 0.00044 20.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20091173|ref|NP_617248.1| - 0.0068 16.2 0.0 0.0086 15.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20091173|ref|NP_617248.1| - 0.011 15.8 0.0 0.02 15.0 0.0 1.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20091173|ref|NP_617248.1| - 0.027 14.4 0.0 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20091173|ref|NP_617248.1| - 0.063 13.4 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20091173|ref|NP_617248.1| - 0.1 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4386 PF14329.1 gi|20091174|ref|NP_617249.1| - 1.3e-69 233.9 31.8 1.5e-69 233.7 22.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) GWT1 PF06423.7 gi|20091174|ref|NP_617249.1| - 0.025 14.6 6.4 0.051 13.6 4.4 1.6 1 1 0 1 1 1 0 GWT1 HemY_N PF07219.8 gi|20091174|ref|NP_617249.1| - 0.67 9.5 9.3 0.13 11.8 1.7 2.7 2 0 0 2 2 2 0 HemY protein N-terminus CbtB PF09489.5 gi|20091174|ref|NP_617249.1| - 1.3 9.0 4.0 1.5 8.8 0.5 2.7 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) dCMP_cyt_deam_1 PF00383.17 gi|20091176|ref|NP_617251.1| - 1.9e-19 69.2 0.0 2.7e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|20091176|ref|NP_617251.1| - 0.014 15.2 0.1 0.026 14.3 0.0 1.4 1 1 0 1 1 1 0 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|20091176|ref|NP_617251.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase DUF2625 PF10946.3 gi|20091176|ref|NP_617251.1| - 0.095 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF2625 EF-hand_8 PF13833.1 gi|20091177|ref|NP_617252.1| - 0.4 10.3 1.7 5.8 6.6 0.1 2.7 3 0 0 3 3 3 0 EF-hand domain pair Abhydrolase_6 PF12697.2 gi|20091178|ref|NP_617253.1| - 2.6e-21 76.5 0.2 3.1e-21 76.3 0.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20091178|ref|NP_617253.1| - 6.7e-14 52.0 0.0 7.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20091178|ref|NP_617253.1| - 4.7e-08 32.9 0.1 8.5e-08 32.0 0.0 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|20091178|ref|NP_617253.1| - 0.00047 19.6 0.0 0.00078 18.9 0.0 1.5 1 1 0 1 1 1 1 Putative esterase Ndr PF03096.9 gi|20091178|ref|NP_617253.1| - 0.0029 16.1 0.0 0.0037 15.8 0.0 1.1 1 0 0 1 1 1 1 Ndr family PGAP1 PF07819.8 gi|20091178|ref|NP_617253.1| - 0.01 15.4 0.0 0.28 10.7 0.0 2.1 1 1 0 1 1 1 0 PGAP1-like protein Lipase_2 PF01674.13 gi|20091178|ref|NP_617253.1| - 0.12 11.6 0.1 0.66 9.2 0.1 1.9 1 1 0 1 1 1 0 Lipase (class 2) DUF915 PF06028.6 gi|20091178|ref|NP_617253.1| - 0.13 11.2 0.1 0.35 9.9 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) APH PF01636.18 gi|20091179|ref|NP_617254.1| - 6.4e-08 32.6 0.0 1.3e-07 31.6 0.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family DUF4381 PF14316.1 gi|20091179|ref|NP_617254.1| - 0.03 14.4 0.1 0.3 11.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) rve PF00665.21 gi|20091179|ref|NP_617254.1| - 0.098 12.7 0.0 0.81 9.8 0.0 2.3 2 1 0 2 2 2 0 Integrase core domain Glycos_transf_1 PF00534.15 gi|20091180|ref|NP_617255.1| - 3.7e-31 107.8 0.0 6.9e-31 106.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20091180|ref|NP_617255.1| - 7.7e-22 78.1 0.0 1.1e-21 77.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|20091180|ref|NP_617255.1| - 1.7e-16 60.4 0.1 4.2e-14 52.6 0.0 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|20091180|ref|NP_617255.1| - 2.4e-15 56.7 0.2 5.2e-15 55.5 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|20091180|ref|NP_617255.1| - 1.6e-13 50.9 0.0 4.4e-13 49.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20091180|ref|NP_617255.1| - 2.1e-08 34.1 0.0 4.1e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|20091180|ref|NP_617255.1| - 0.012 15.9 0.0 0.028 14.6 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 LpxK PF02606.9 gi|20091180|ref|NP_617255.1| - 0.024 13.5 0.0 0.037 12.9 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase PhoU PF01895.14 gi|20091181|ref|NP_617256.1| - 4.2e-23 81.5 7.1 3.7e-18 65.7 1.3 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|20091181|ref|NP_617256.1| - 0.00075 19.1 0.0 0.002 17.7 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Rad51 PF08423.6 gi|20091181|ref|NP_617256.1| - 0.15 10.9 0.8 0.24 10.2 0.1 1.7 2 0 0 2 2 2 0 Rad51 APH PF01636.18 gi|20091182|ref|NP_617257.1| - 1.7e-08 34.4 0.0 2.5e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|20091182|ref|NP_617257.1| - 0.0028 17.0 1.0 1.7 7.9 0.0 2.5 1 1 0 2 2 2 2 RIO1 family Pkinase_Tyr PF07714.12 gi|20091182|ref|NP_617257.1| - 0.0079 15.2 0.0 0.019 14.0 0.1 1.6 2 0 0 2 2 2 1 Protein tyrosine kinase Pkinase PF00069.20 gi|20091182|ref|NP_617257.1| - 0.012 14.8 0.1 0.14 11.2 0.1 2.4 1 1 0 1 1 1 0 Protein kinase domain CHASE4 PF05228.8 gi|20091183|ref|NP_617258.1| - 9.5e-45 152.0 0.0 2.2e-44 150.8 0.0 1.6 2 0 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.21 gi|20091183|ref|NP_617258.1| - 2.1e-32 111.1 0.1 4.4e-32 110.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20091183|ref|NP_617258.1| - 5.7e-20 71.0 0.0 1.4e-19 69.8 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20091183|ref|NP_617258.1| - 4.2e-17 62.1 0.0 1.2e-16 60.7 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|20091183|ref|NP_617258.1| - 1.2e-11 44.8 0.1 6e-11 42.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|20091183|ref|NP_617258.1| - 4.8e-07 30.0 0.0 1.2e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain HAMP PF00672.20 gi|20091183|ref|NP_617258.1| - 7.8e-07 29.1 0.1 7.8e-07 29.1 0.1 1.7 2 0 0 2 2 2 1 HAMP domain PAS PF00989.19 gi|20091183|ref|NP_617258.1| - 0.0028 17.4 0.0 0.0079 15.9 0.0 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|20091183|ref|NP_617258.1| - 0.0084 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UN_NPL4 PF11543.3 gi|20091183|ref|NP_617258.1| - 0.043 14.0 0.3 3.2 8.0 0.0 2.9 2 0 0 2 2 2 0 Nuclear pore localisation protein NPL4 PBP_like_2 PF12849.2 gi|20091184|ref|NP_617259.1| - 1.5e-23 83.6 2.1 2.5e-23 82.9 1.3 1.4 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.2 gi|20091184|ref|NP_617259.1| - 1.9e-07 30.1 1.2 1.3e-06 27.5 0.8 2.1 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|20091184|ref|NP_617259.1| - 0.1 12.2 0.0 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein CHAD PF05235.9 gi|20091185|ref|NP_617260.1| - 6.7e-50 169.8 1.6 1.2e-49 168.9 1.1 1.4 1 0 0 1 1 1 1 CHAD domain CYTH PF01928.16 gi|20091185|ref|NP_617260.1| - 1.1e-19 70.8 0.8 3.3e-19 69.2 0.5 1.9 1 0 0 1 1 1 1 CYTH domain Upf2 PF04050.9 gi|20091185|ref|NP_617260.1| - 0.073 12.8 5.5 0.051 13.3 1.4 2.1 2 0 0 2 2 2 0 Up-frameshift suppressor 2 Ppx-GppA PF02541.11 gi|20091186|ref|NP_617261.1| - 1.3e-62 211.5 0.4 2e-62 210.9 0.2 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.17 gi|20091186|ref|NP_617261.1| - 2.3e-10 40.5 2.5 2.9e-10 40.1 0.8 1.9 2 0 0 2 2 2 1 HD domain FtsA PF14450.1 gi|20091186|ref|NP_617261.1| - 0.0016 18.2 0.0 0.24 11.2 0.0 2.6 2 1 0 2 2 2 2 Cell division protein FtsA NTPase_I-T PF01931.13 gi|20091187|ref|NP_617262.1| - 0.072 12.8 0.6 2.3 7.9 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF84 P120R PF08062.6 gi|20091187|ref|NP_617262.1| - 3.4 8.0 5.7 3e+02 2.0 0.0 4.8 5 0 0 5 5 5 0 P120R (NUC006) repeat GCS2 PF04107.8 gi|20091187|ref|NP_617262.1| - 3.7 6.5 7.0 13 4.8 1.0 2.4 1 1 0 2 2 2 0 Glutamate-cysteine ligase family 2(GCS2) DUF2366 PF10171.4 gi|20091187|ref|NP_617262.1| - 5.8 6.3 8.9 6.1 6.2 1.0 3.0 1 1 2 4 4 4 0 Uncharacterised conserved protein (DUF2366) Pentapeptide PF00805.17 gi|20091188|ref|NP_617263.1| - 3.2e-85 278.3 56.6 1.3e-14 52.9 4.3 9.5 2 1 5 10 10 10 9 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|20091188|ref|NP_617263.1| - 1.7e-52 175.1 18.4 4e-12 45.7 0.2 5.0 1 1 5 6 6 6 6 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|20091188|ref|NP_617263.1| - 5.3e-27 93.4 0.0 0.00067 19.4 0.0 7.5 1 1 9 10 10 10 9 Pentapeptide repeats (9 copies) LRR_1 PF00560.28 gi|20091188|ref|NP_617263.1| - 3.2 8.1 4.4 83 3.8 0.0 4.7 5 1 0 5 5 5 0 Leucine Rich Repeat SAM_PNT PF02198.11 gi|20091188|ref|NP_617263.1| - 3.3 7.5 5.4 10 5.9 0.0 4.0 3 2 2 6 6 6 0 Sterile alpha motif (SAM)/Pointed domain Spore_YabQ PF09578.5 gi|20091190|ref|NP_617265.1| - 9 6.3 8.0 2.6 8.0 1.2 2.2 1 1 1 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) UvrD-helicase PF00580.16 gi|20091191|ref|NP_617266.1| - 1.2e-60 205.4 9.5 1.2e-60 205.4 6.6 1.7 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|20091191|ref|NP_617266.1| - 7.4e-31 107.8 2.4 7.4e-31 107.8 1.7 2.6 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|20091191|ref|NP_617266.1| - 2.5e-13 49.5 0.1 1.2e-12 47.3 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|20091191|ref|NP_617266.1| - 2.7e-07 30.3 0.0 5.5e-06 26.1 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|20091191|ref|NP_617266.1| - 5.4e-07 29.8 3.1 0.036 14.2 0.0 3.7 3 1 0 3 3 3 3 AAA domain AAA_11 PF13086.1 gi|20091191|ref|NP_617266.1| - 0.016 14.8 5.8 0.065 12.7 4.0 2.2 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|20091191|ref|NP_617266.1| - 0.018 14.5 1.7 0.11 12.0 0.0 2.8 3 0 0 3 3 3 0 DEAD/DEAH box helicase PDDEXK_1 PF12705.2 gi|20091192|ref|NP_617267.1| - 3.4e-35 121.6 0.5 3.4e-35 121.6 0.3 1.7 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.1 gi|20091192|ref|NP_617267.1| - 4.8e-20 72.3 0.5 8.9e-20 71.4 0.1 1.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|20091192|ref|NP_617267.1| - 1.5e-07 31.5 0.1 1.8e-05 24.7 0.1 2.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain DUF2800 PF10926.3 gi|20091192|ref|NP_617267.1| - 2.9e-07 29.9 0.0 6.8e-07 28.7 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2800) Exo5 PF09810.4 gi|20091192|ref|NP_617267.1| - 2e-05 23.9 2.9 2.5e-05 23.7 0.0 2.2 2 1 0 2 2 2 1 Exonuclease V - a 5' deoxyribonuclease Dna2 PF08696.6 gi|20091192|ref|NP_617267.1| - 0.018 14.3 0.0 0.035 13.4 0.0 1.4 1 0 0 1 1 1 0 DNA replication factor Dna2 Cas_Cas4 PF01930.12 gi|20091192|ref|NP_617267.1| - 0.059 13.2 8.2 1.1 9.2 1.0 3.9 3 1 0 3 3 3 0 Domain of unknown function DUF83 DUF1957 PF09210.6 gi|20091193|ref|NP_617268.1| - 0.071 13.1 0.2 3.4 7.7 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1957) AAA_27 PF13514.1 gi|20091195|ref|NP_617270.1| - 1e-146 490.3 62.2 1.9e-76 257.7 11.7 3.5 2 1 1 3 3 3 3 AAA domain GAS PF13851.1 gi|20091195|ref|NP_617270.1| - 1.8e-05 24.0 8.1 1.8e-05 24.0 5.6 9.2 6 3 2 8 8 8 5 Growth-arrest specific micro-tubule binding AAA_23 PF13476.1 gi|20091195|ref|NP_617270.1| - 0.00031 21.1 38.6 0.00031 21.1 26.8 7.2 2 2 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20091195|ref|NP_617270.1| - 0.0058 16.1 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|20091195|ref|NP_617270.1| - 1.2 9.0 11.4 0.079 12.9 2.5 2.9 2 2 0 2 2 2 0 AAA domain DUF4279 PF14106.1 gi|20091195|ref|NP_617270.1| - 5.2 6.9 11.1 5.9 6.8 0.0 5.3 5 0 0 5 5 5 0 Domain of unknown function (DUF4279) Metallophos_2 PF12850.2 gi|20091196|ref|NP_617271.1| - 7.4e-14 51.8 0.0 1.1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20091196|ref|NP_617271.1| - 5.2e-12 45.5 0.4 9.2e-12 44.7 0.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Lon_2 PF13337.1 gi|20091197|ref|NP_617272.1| - 1e-216 719.7 1.1 1.2e-216 719.4 0.8 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.8 gi|20091197|ref|NP_617272.1| - 1.6e-07 30.8 0.0 3.3e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|20091197|ref|NP_617272.1| - 0.13 11.7 0.8 0.89 9.0 0.1 2.3 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase PglZ PF08665.7 gi|20091198|ref|NP_617273.1| - 1.1e-61 207.6 0.6 7.1e-61 205.0 0.0 2.3 2 0 0 2 2 2 1 PglZ domain Phosphodiest PF01663.17 gi|20091198|ref|NP_617273.1| - 6.2e-05 22.4 0.0 0.00014 21.3 0.0 1.6 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Arch_ATPase PF01637.13 gi|20091199|ref|NP_617274.1| - 1.6e-27 96.7 1.1 1e-26 94.0 0.7 2.4 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|20091199|ref|NP_617274.1| - 4e-24 84.6 0.4 3.8e-23 81.5 0.1 2.7 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|20091199|ref|NP_617274.1| - 1.7e-12 47.3 0.8 3.7e-11 43.0 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20091199|ref|NP_617274.1| - 6.7e-05 23.0 0.0 0.00014 21.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20091199|ref|NP_617274.1| - 0.0046 16.9 0.1 0.092 12.7 0.0 2.6 1 1 0 2 2 2 1 AAA ATPase domain HAD PF12710.2 gi|20091199|ref|NP_617274.1| - 0.018 15.2 0.0 0.046 13.8 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_5 PF01022.15 gi|20091199|ref|NP_617274.1| - 0.023 14.3 0.2 0.047 13.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Miro PF08477.8 gi|20091199|ref|NP_617274.1| - 0.029 14.8 0.0 0.34 11.4 0.0 2.5 3 0 0 3 3 3 0 Miro-like protein HTH_24 PF13412.1 gi|20091199|ref|NP_617274.1| - 0.04 13.3 0.0 0.08 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0150 PF03681.10 gi|20091200|ref|NP_617275.1| - 1.1e-17 63.3 0.3 1.6e-17 62.8 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|20091200|ref|NP_617275.1| - 3e-06 27.1 0.1 3.9e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3832) RE_MjaI PF09568.5 gi|20091200|ref|NP_617275.1| - 0.1 12.1 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 MjaI restriction endonuclease HATPase_c_4 PF13749.1 gi|20091201|ref|NP_617276.1| - 2.7e-26 91.1 0.0 6e-26 90.0 0.0 1.5 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|20091201|ref|NP_617276.1| - 4.7e-24 84.8 0.0 8.8e-24 83.9 0.0 1.5 1 0 0 1 1 1 1 Divergent AAA domain HATPase_c_2 PF13581.1 gi|20091201|ref|NP_617276.1| - 0.0025 17.6 0.0 0.0058 16.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_27 PF13463.1 gi|20091201|ref|NP_617276.1| - 0.0072 16.6 0.0 0.018 15.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|20091201|ref|NP_617276.1| - 0.012 15.6 0.1 0.048 13.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|20091201|ref|NP_617276.1| - 0.02 14.7 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HATPase_c_4 PF13749.1 gi|20091202|ref|NP_617277.1| - 1.3e-23 82.5 0.0 2.9e-23 81.4 0.0 1.5 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|20091202|ref|NP_617277.1| - 6.5e-23 81.1 0.2 1.4e-22 80.1 0.1 1.6 1 0 0 1 1 1 1 Divergent AAA domain DUF334 PF03904.8 gi|20091202|ref|NP_617277.1| - 0.089 12.0 0.3 0.15 11.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF334) Methyltransf_26 PF13659.1 gi|20091204|ref|NP_617279.1| - 7e-16 58.3 0.0 1.6e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|20091204|ref|NP_617279.1| - 2e-09 37.0 0.0 0.00031 19.9 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.6 gi|20091204|ref|NP_617279.1| - 7.3e-09 35.9 1.8 2e-08 34.5 0.1 2.7 3 0 0 3 3 3 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|20091204|ref|NP_617279.1| - 0.014 14.9 0.0 4.2 6.9 0.0 2.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Dzip-like_N PF13815.1 gi|20091204|ref|NP_617279.1| - 0.23 11.2 4.0 0.071 12.9 0.4 1.9 2 0 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal KAP_NTPase PF07693.9 gi|20091205|ref|NP_617280.1| - 0.0027 16.7 0.5 0.0027 16.7 0.3 2.1 2 1 0 2 2 2 1 KAP family P-loop domain NACHT PF05729.7 gi|20091205|ref|NP_617280.1| - 0.076 12.6 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.14 gi|20091205|ref|NP_617280.1| - 3.5 6.8 11.2 0.023 13.9 1.0 2.4 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF1788 PF08747.6 gi|20091206|ref|NP_617281.1| - 8.8e-47 158.0 0.1 6.9e-46 155.2 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1788) Lactamase_B_2 PF12706.2 gi|20091207|ref|NP_617282.1| - 1e-25 90.4 0.1 1.2e-25 90.1 0.0 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20091207|ref|NP_617282.1| - 6.3e-11 42.2 2.5 1.6e-10 40.9 1.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|20091207|ref|NP_617282.1| - 0.018 14.7 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain NTP_transf_2 PF01909.18 gi|20091208|ref|NP_617283.1| - 1.2e-13 51.1 0.1 1.7e-13 50.6 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|20091208|ref|NP_617283.1| - 0.011 15.7 0.0 0.027 14.5 0.0 1.5 1 1 1 2 2 2 0 DNA polymerase beta palm Adenyl_cycl_N PF12633.2 gi|20091208|ref|NP_617283.1| - 0.022 14.2 0.0 0.027 14.0 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain CAAP1 PF15335.1 gi|20091208|ref|NP_617283.1| - 0.12 12.5 0.2 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Caspase activity and apoptosis inhibitor 1 Nop52 PF05997.7 gi|20091209|ref|NP_617284.1| - 0.046 13.1 1.2 0.052 12.9 0.8 1.1 1 0 0 1 1 1 0 Nucleolar protein,Nop52 AgrD PF05931.6 gi|20091209|ref|NP_617284.1| - 7.3 6.3 8.1 18 5.0 0.1 2.5 2 0 0 2 2 2 0 Staphylococcal AgrD protein MULE PF10551.4 gi|20091210|ref|NP_617285.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091210|ref|NP_617285.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091210|ref|NP_617285.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20091210|ref|NP_617285.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20091210|ref|NP_617285.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091210|ref|NP_617285.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091210|ref|NP_617285.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091210|ref|NP_617285.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger TRAM PF01938.15 gi|20091211|ref|NP_617286.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 TRAM domain MannoseP_isomer PF01050.13 gi|20091212|ref|NP_617287.1| - 2.4e-34 118.1 0.9 4.6e-34 117.2 0.6 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Glycos_transf_1 PF00534.15 gi|20091212|ref|NP_617287.1| - 3.7e-24 85.0 0.1 6.2e-24 84.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20091212|ref|NP_617287.1| - 5e-11 42.8 0.0 1.2e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Cupin_2 PF07883.6 gi|20091212|ref|NP_617287.1| - 6.4e-09 35.1 0.1 1.1e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Glyco_trans_1_2 PF13524.1 gi|20091212|ref|NP_617287.1| - 3e-07 30.5 0.1 7.3e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20091212|ref|NP_617287.1| - 1.1e-06 28.4 0.0 2.6e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|20091212|ref|NP_617287.1| - 0.005 16.9 0.0 0.013 15.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Auxin_BP PF02041.11 gi|20091212|ref|NP_617287.1| - 0.048 13.0 0.1 0.28 10.5 0.0 2.1 2 0 0 2 2 2 0 Auxin binding protein DUF377 PF04041.8 gi|20091213|ref|NP_617288.1| - 2.1e-61 207.3 0.0 2.5e-61 207.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) Glycos_transf_1 PF00534.15 gi|20091214|ref|NP_617289.1| - 5.7e-17 61.6 0.0 6.4e-16 58.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20091214|ref|NP_617289.1| - 1.3e-13 51.2 0.0 1.1e-12 48.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_hydro_88 PF07470.8 gi|20091214|ref|NP_617289.1| - 0.0024 16.9 0.4 0.23 10.4 0.1 2.7 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.9 gi|20091214|ref|NP_617289.1| - 0.015 14.6 0.2 0.032 13.6 0.1 1.6 1 0 0 1 1 1 0 Glycosyl hydrolase family 76 Glyco_trans_1_2 PF13524.1 gi|20091214|ref|NP_617289.1| - 0.023 14.9 0.0 0.073 13.3 0.0 1.9 1 0 0 1 1 1 0 Glycosyl transferases group 1 Disaggr_repeat PF06848.6 gi|20091215|ref|NP_617290.1| - 7.6e-196 644.6 20.5 3.5e-98 326.4 4.3 2.5 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|20091215|ref|NP_617290.1| - 3.3e-83 277.9 8.8 3.3e-83 277.9 6.1 3.3 2 1 1 3 3 3 1 Disaggregatase related Beta_helix PF13229.1 gi|20091215|ref|NP_617290.1| - 4.9e-17 62.1 80.0 8.4e-11 41.8 14.0 3.8 2 1 2 4 4 4 3 Right handed beta helix region TGFb_propeptide PF00688.13 gi|20091215|ref|NP_617290.1| - 1.1e-09 37.9 0.0 0.11 11.7 0.0 4.2 4 0 0 4 4 4 4 TGF-beta propeptide He_PIG PF05345.7 gi|20091215|ref|NP_617290.1| - 1.3e-09 37.9 6.4 1.8e-08 34.2 1.1 3.1 2 0 0 2 2 2 2 Putative Ig domain MORN_2 PF07661.8 gi|20091215|ref|NP_617290.1| - 0.28 11.3 3.4 86 3.6 0.0 4.5 4 0 0 4 4 4 0 MORN repeat variant Y_phosphatase3 PF13350.1 gi|20091216|ref|NP_617291.1| - 8.5e-05 22.8 0.1 9.8e-05 22.6 0.1 1.0 1 0 0 1 1 1 1 Tyrosine phosphatase family Y_phosphatase PF00102.22 gi|20091216|ref|NP_617291.1| - 0.011 15.1 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein-tyrosine phosphatase DSPc PF00782.15 gi|20091216|ref|NP_617291.1| - 0.012 15.1 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Dual specificity phosphatase, catalytic domain XisI PF08869.6 gi|20091217|ref|NP_617292.1| - 0.087 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 XisI protein Acyl-CoA_ox_N PF14749.1 gi|20091217|ref|NP_617292.1| - 0.094 13.0 0.3 0.22 11.8 0.1 1.6 1 1 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal DUF1699 PF08004.6 gi|20091218|ref|NP_617293.1| - 6.3e-68 226.3 0.9 7.2e-68 226.1 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) LKAAEAR PF15478.1 gi|20091218|ref|NP_617293.1| - 0.057 13.6 0.1 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function with LKAAEAR motif KIX PF02172.11 gi|20091218|ref|NP_617293.1| - 0.071 13.1 0.1 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 KIX domain PAM2 PF07145.10 gi|20091218|ref|NP_617293.1| - 0.1 12.1 0.2 12 5.6 0.0 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region DUF4394 PF14339.1 gi|20091218|ref|NP_617293.1| - 0.17 11.1 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) TrmB PF01978.14 gi|20091219|ref|NP_617294.1| - 0.0044 16.7 0.0 0.084 12.5 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB NinB PF05772.7 gi|20091219|ref|NP_617294.1| - 0.085 12.5 0.2 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 NinB protein DUF2551 PF10826.3 gi|20091220|ref|NP_617295.1| - 7.2e-35 118.7 0.7 9.2e-35 118.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|20091220|ref|NP_617295.1| - 0.00048 20.2 0.0 0.0008 19.4 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor PPK2 PF03976.9 gi|20091222|ref|NP_617297.1| - 5.8e-139 460.8 8.6 4e-88 294.5 3.4 2.1 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_33 PF13671.1 gi|20091222|ref|NP_617297.1| - 0.019 14.8 0.0 0.071 12.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20091222|ref|NP_617297.1| - 0.093 13.0 8.7 0.25 11.6 0.2 4.1 4 0 0 4 4 4 0 AAA domain MULE PF10551.4 gi|20091224|ref|NP_617299.1| - 9.8e-13 48.0 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091224|ref|NP_617299.1| - 0.022 13.2 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091224|ref|NP_617299.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20091224|ref|NP_617299.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20091224|ref|NP_617299.1| - 0.04 13.4 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091224|ref|NP_617299.1| - 0.093 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091224|ref|NP_617299.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091224|ref|NP_617299.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger GvpK PF05121.7 gi|20091225|ref|NP_617300.1| - 0.056 13.2 0.1 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 Gas vesicle protein K AstA PF04958.7 gi|20091225|ref|NP_617300.1| - 0.078 11.3 0.1 0.088 11.2 0.0 1.0 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit DUF257 PF03192.8 gi|20091225|ref|NP_617300.1| - 0.1 11.8 0.5 0.11 11.7 0.4 1.1 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 DUF2719 PF10891.3 gi|20091227|ref|NP_617302.1| - 0.078 12.6 0.3 0.11 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2719) PAS_3 PF08447.6 gi|20091228|ref|NP_617303.1| - 1.3e-37 127.7 0.1 9.7e-15 54.4 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|20091228|ref|NP_617303.1| - 4.9e-33 113.6 0.2 3.3e-11 43.4 0.0 4.3 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|20091228|ref|NP_617303.1| - 3.5e-29 100.8 0.0 1.4e-09 37.6 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|20091228|ref|NP_617303.1| - 2.5e-20 72.5 0.0 6.7e-06 26.1 0.0 4.2 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|20091228|ref|NP_617303.1| - 4.3e-11 42.2 0.0 4.7e-05 23.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|20091228|ref|NP_617303.1| - 5.4e-10 39.9 0.0 1.3e-09 38.7 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|20091228|ref|NP_617303.1| - 2.5e-06 27.4 0.0 0.052 13.4 0.0 4.4 4 1 1 5 5 5 1 PAS domain GAF_3 PF13492.1 gi|20091228|ref|NP_617303.1| - 0.0013 18.8 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|20091228|ref|NP_617303.1| - 0.015 15.5 0.2 2.7 8.3 0.0 3.3 3 0 0 3 3 3 0 PAS domain DUF59 PF01883.14 gi|20091229|ref|NP_617304.1| - 5e-21 74.4 0.1 6.6e-21 74.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 HMA PF00403.21 gi|20091229|ref|NP_617304.1| - 0.1 12.7 0.5 0.22 11.6 0.3 1.5 1 0 0 1 1 1 0 Heavy-metal-associated domain Nitroreductase PF00881.19 gi|20091230|ref|NP_617305.1| - 4.6e-33 114.3 0.0 5.3e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family His_Phos_1 PF00300.17 gi|20091231|ref|NP_617306.1| - 3.4e-38 131.2 0.0 4.2e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) HD PF01966.17 gi|20091232|ref|NP_617307.1| - 1.5e-07 31.4 1.0 2.3e-07 30.8 0.7 1.3 1 0 0 1 1 1 1 HD domain Cnd3 PF12719.2 gi|20091233|ref|NP_617308.1| - 0.032 13.2 0.2 0.038 12.9 0.1 1.1 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain ResIII PF04851.10 gi|20091234|ref|NP_617309.1| - 5.4e-24 85.0 0.0 2.4e-22 79.6 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|20091234|ref|NP_617309.1| - 7.4e-18 64.1 0.4 1.8e-17 62.9 0.1 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|20091234|ref|NP_617309.1| - 2.7e-09 36.7 0.0 6e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF790 PF05626.6 gi|20091235|ref|NP_617310.1| - 1.3e-161 537.4 1.0 1.7e-161 536.9 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Drc1-Sld2 PF11719.3 gi|20091235|ref|NP_617310.1| - 0.015 14.4 0.2 0.023 13.7 0.1 1.3 1 0 0 1 1 1 0 DNA replication and checkpoint protein 7TMR-DISM_7TM PF07695.6 gi|20091236|ref|NP_617311.1| - 0.015 14.9 7.5 0.017 14.8 5.2 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling MFS_Mycoplasma PF07672.8 gi|20091236|ref|NP_617311.1| - 0.028 13.6 0.4 0.028 13.5 0.3 1.1 1 0 0 1 1 1 0 Mycoplasma MFS transporter 2TM PF13239.1 gi|20091236|ref|NP_617311.1| - 0.035 14.1 2.2 0.042 13.8 1.5 1.1 1 0 0 1 1 1 0 2TM domain Sigma_reg_N PF13800.1 gi|20091236|ref|NP_617311.1| - 6.4 6.8 7.1 19 5.3 0.3 2.1 1 1 1 2 2 2 0 Sigma factor regulator N-terminal DDE_Tnp_ISL3 PF01610.12 gi|20091237|ref|NP_617312.1| - 1.8e-76 256.9 5.2 2.9e-76 256.3 3.6 1.3 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|20091237|ref|NP_617312.1| - 7.8e-13 48.2 6.6 5.9e-11 42.2 4.8 2.7 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|20091237|ref|NP_617312.1| - 5.3e-06 25.5 0.2 1.2e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.4 gi|20091237|ref|NP_617312.1| - 0.0014 18.7 0.2 0.027 14.6 0.0 2.3 1 1 1 2 2 2 1 MULE transposase domain Lar_restr_allev PF14354.1 gi|20091237|ref|NP_617312.1| - 0.1 12.8 2.5 0.26 11.6 1.7 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|20091237|ref|NP_617312.1| - 2.4 8.3 7.2 0.12 12.4 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TPP_enzyme_C PF02775.16 gi|20091238|ref|NP_617313.1| - 5.2e-26 91.0 0.0 8e-26 90.4 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Methyltransf_11 PF08241.7 gi|20091239|ref|NP_617314.1| - 1.4e-22 80.0 0.0 2.3e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091239|ref|NP_617314.1| - 2.6e-19 69.3 0.0 3.3e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091239|ref|NP_617314.1| - 3.3e-19 68.9 0.0 8.9e-19 67.5 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20091239|ref|NP_617314.1| - 8.1e-16 58.2 0.0 1.8e-15 57.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091239|ref|NP_617314.1| - 4.1e-13 49.8 0.0 7.5e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091239|ref|NP_617314.1| - 2.2e-12 47.2 0.0 3.8e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091239|ref|NP_617314.1| - 1.6e-11 44.1 0.0 2.1e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20091239|ref|NP_617314.1| - 1.3e-10 40.8 0.0 2.1e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|20091239|ref|NP_617314.1| - 5.4e-10 39.3 0.0 1.7e-09 37.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|20091239|ref|NP_617314.1| - 6.6e-09 35.1 0.0 1.2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.14 gi|20091239|ref|NP_617314.1| - 1.5e-08 34.4 0.0 1.9e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|20091239|ref|NP_617314.1| - 1.2e-06 28.0 0.0 4.1e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|20091239|ref|NP_617314.1| - 2.3e-06 26.8 0.0 7.3e-06 25.1 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase GCD14 PF08704.5 gi|20091239|ref|NP_617314.1| - 1.2e-05 25.0 0.0 1.6e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit UPF0020 PF01170.13 gi|20091239|ref|NP_617314.1| - 2.2e-05 24.0 0.0 3.9e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 ADH_zinc_N PF00107.21 gi|20091239|ref|NP_617314.1| - 0.00037 20.0 0.0 0.94 9.0 0.0 2.2 2 0 0 2 2 2 2 Zinc-binding dehydrogenase Fibrillarin PF01269.12 gi|20091239|ref|NP_617314.1| - 0.00045 19.1 0.0 0.00085 18.3 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.15 gi|20091239|ref|NP_617314.1| - 0.00063 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DOT1 PF08123.8 gi|20091239|ref|NP_617314.1| - 0.003 16.8 0.0 0.0043 16.3 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_24 PF13578.1 gi|20091239|ref|NP_617314.1| - 0.0032 18.2 0.0 0.0055 17.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|20091239|ref|NP_617314.1| - 0.0063 16.1 0.0 0.06 12.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.8 gi|20091239|ref|NP_617314.1| - 0.0065 15.6 0.0 0.0093 15.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) N6_N4_Mtase PF01555.13 gi|20091239|ref|NP_617314.1| - 0.019 14.4 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 DNA methylase CmcI PF04989.7 gi|20091239|ref|NP_617314.1| - 0.042 13.1 0.0 0.064 12.5 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase DREV PF05219.7 gi|20091239|ref|NP_617314.1| - 0.055 12.3 0.0 7.1 5.4 0.0 2.1 2 0 0 2 2 2 0 DREV methyltransferase DUF938 PF06080.7 gi|20091239|ref|NP_617314.1| - 0.099 12.1 0.0 0.52 9.8 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_5 PF01795.14 gi|20091239|ref|NP_617314.1| - 0.18 11.0 0.0 4 6.6 0.0 2.0 1 1 0 2 2 2 0 MraW methylase family SDH_sah PF01972.11 gi|20091240|ref|NP_617315.1| - 6.5e-82 274.5 0.1 7.1e-82 274.3 0.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|20091240|ref|NP_617315.1| - 3.4e-05 23.5 0.0 0.00014 21.6 0.0 1.9 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|20091240|ref|NP_617315.1| - 6.1e-05 22.8 0.0 0.00029 20.6 0.0 1.9 2 0 0 2 2 2 1 Peptidase family S49 Radical_SAM PF04055.16 gi|20091241|ref|NP_617316.1| - 2.8e-07 30.8 1.3 4.1e-07 30.3 0.2 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20091241|ref|NP_617316.1| - 0.00021 21.4 0.1 0.0005 20.2 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1016 PF06250.6 gi|20091243|ref|NP_617318.1| - 1e-142 474.8 1.8 1.4e-142 474.4 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) CbiD PF01888.12 gi|20091243|ref|NP_617318.1| - 0.18 10.7 0.0 1.9 7.3 0.0 2.3 3 0 0 3 3 3 0 CbiD HATPase_c_4 PF13749.1 gi|20091244|ref|NP_617319.1| - 1.4e-21 76.0 0.0 4.2e-21 74.5 0.0 1.8 2 0 0 2 2 2 1 ATP-dependent DNA helicase recG C-terminal DUF4062 PF13271.1 gi|20091244|ref|NP_617319.1| - 2.4e-17 62.7 0.3 1.9e-16 59.8 0.0 2.6 4 0 0 4 4 4 1 Domain of unknown function (DUF4062) HTH_DeoR PF08220.7 gi|20091244|ref|NP_617319.1| - 0.00017 21.0 0.1 0.00036 20.0 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain N6_Mtase PF02384.11 gi|20091245|ref|NP_617320.1| - 4.5e-56 190.2 0.0 7.3e-56 189.5 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|20091245|ref|NP_617320.1| - 1e-14 54.5 0.0 1.7e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|20091245|ref|NP_617320.1| - 1.1e-12 47.8 0.0 2e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|20091245|ref|NP_617320.1| - 0.0031 17.8 0.0 0.0079 16.5 0.0 1.6 2 0 0 2 2 2 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|20091245|ref|NP_617320.1| - 0.0057 16.2 0.0 0.021 14.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091245|ref|NP_617320.1| - 0.12 11.4 0.0 0.5 9.4 0.0 1.9 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methylase_S PF01420.14 gi|20091246|ref|NP_617321.1| - 3.2e-31 108.5 0.0 5.6e-20 71.9 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF262 PF03235.9 gi|20091248|ref|NP_617323.1| - 3.5e-36 125.2 0.6 3.5e-36 125.2 0.4 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|20091248|ref|NP_617323.1| - 1e-29 103.1 3.0 2e-29 102.2 2.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) ResIII PF04851.10 gi|20091249|ref|NP_617324.1| - 1.9e-32 112.5 0.1 6.6e-32 110.8 0.0 2.0 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|20091249|ref|NP_617324.1| - 3e-27 95.4 11.7 9.7e-27 93.8 0.0 3.7 4 0 0 4 4 4 1 EcoEI R protein C-terminal HSDR_N PF04313.9 gi|20091249|ref|NP_617324.1| - 1.9e-11 44.1 0.0 5e-08 32.9 0.0 2.8 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF4145 PF13643.1 gi|20091249|ref|NP_617324.1| - 4.8e-09 35.9 0.0 1.3e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) DEAD PF00270.24 gi|20091249|ref|NP_617324.1| - 7.8e-08 31.9 0.0 1.9e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|20091249|ref|NP_617324.1| - 3.2e-06 26.9 0.0 7.2e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|20091249|ref|NP_617324.1| - 0.0024 16.7 0.0 0.0053 15.5 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|20091249|ref|NP_617324.1| - 0.012 14.5 0.0 0.025 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|20091249|ref|NP_617324.1| - 0.027 14.0 0.9 9.7 5.6 0.0 3.2 2 1 1 3 3 3 0 AAA domain KSR1-SAM PF13543.1 gi|20091249|ref|NP_617324.1| - 0.044 13.5 0.8 0.1 12.4 0.5 1.6 1 0 0 1 1 1 0 SAM like domain present in kinase suppressor RAS 1 BRE1 PF08647.6 gi|20091249|ref|NP_617324.1| - 0.065 13.2 5.4 0.18 11.8 3.8 1.7 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase DUF342 PF03961.8 gi|20091249|ref|NP_617324.1| - 0.23 9.8 0.2 0.6 8.4 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF342) DUF1319 PF07028.6 gi|20091249|ref|NP_617324.1| - 0.72 10.0 6.8 3.6 7.8 0.4 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1319) DUF972 PF06156.8 gi|20091249|ref|NP_617324.1| - 5.6 7.3 6.2 2 8.7 2.0 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF972) HTH_36 PF13730.1 gi|20091250|ref|NP_617325.1| - 0.022 14.8 0.0 0.07 13.2 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|20091252|ref|NP_617327.1| - 3e-13 49.2 0.1 3e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20091252|ref|NP_617327.1| - 8.2e-13 47.9 0.0 2.5e-07 30.3 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|20091252|ref|NP_617327.1| - 4.3e-11 42.3 0.0 4.9e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|20091252|ref|NP_617327.1| - 1.7e-10 40.2 0.0 7.7e-05 22.2 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR PF01047.17 gi|20091252|ref|NP_617327.1| - 2e-10 40.2 0.1 3e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|20091252|ref|NP_617327.1| - 6e-10 38.3 0.3 0.00076 18.8 0.0 2.8 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20091252|ref|NP_617327.1| - 5.9e-09 35.4 0.1 0.0036 16.9 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|20091252|ref|NP_617327.1| - 1.7e-08 34.1 0.0 0.0012 18.5 0.0 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|20091252|ref|NP_617327.1| - 2.2e-08 33.9 0.2 0.00053 19.8 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|20091252|ref|NP_617327.1| - 4.6e-08 33.0 0.0 0.0043 17.1 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.1 gi|20091252|ref|NP_617327.1| - 1.5e-07 31.6 0.0 0.0026 18.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|20091252|ref|NP_617327.1| - 4.6e-07 29.3 0.2 0.0013 18.3 0.0 2.4 2 0 0 2 2 2 2 HTH domain GntR PF00392.16 gi|20091252|ref|NP_617327.1| - 3.5e-06 26.3 0.0 0.02 14.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_17 PF12728.2 gi|20091252|ref|NP_617327.1| - 5.4e-06 26.5 0.0 0.0071 16.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20091252|ref|NP_617327.1| - 1.4e-05 24.5 0.0 0.19 11.4 0.0 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.1 gi|20091252|ref|NP_617327.1| - 1.6e-05 24.8 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_38 PF13936.1 gi|20091252|ref|NP_617327.1| - 2e-05 24.0 0.1 0.011 15.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091252|ref|NP_617327.1| - 4.9e-05 23.4 0.0 0.032 14.3 0.0 2.2 1 1 1 2 2 2 1 Winged helix-turn helix Sigma54_DBD PF04552.8 gi|20091252|ref|NP_617327.1| - 0.0002 20.9 0.2 0.0058 16.1 0.0 2.4 2 0 0 2 2 2 1 Sigma-54, DNA binding domain HTH_1 PF00126.22 gi|20091252|ref|NP_617327.1| - 0.00028 20.5 0.1 0.12 12.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family PaaX PF07848.7 gi|20091252|ref|NP_617327.1| - 0.00088 19.2 0.1 1.5 8.9 0.0 2.6 2 1 0 2 2 2 2 PaaX-like protein DUF1441 PF07278.6 gi|20091252|ref|NP_617327.1| - 0.00091 18.8 0.0 0.98 9.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1441) Rrf2 PF02082.15 gi|20091252|ref|NP_617327.1| - 0.0014 18.7 0.2 0.27 11.3 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|20091252|ref|NP_617327.1| - 0.0024 17.3 0.2 0.16 11.5 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF746 PF05344.6 gi|20091252|ref|NP_617327.1| - 0.0038 16.7 0.1 1 8.9 0.0 2.3 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) HTH_41 PF14502.1 gi|20091252|ref|NP_617327.1| - 0.004 16.7 0.3 0.23 11.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Cdc6_C PF09079.6 gi|20091252|ref|NP_617327.1| - 0.0044 16.7 0.1 1.4 8.7 0.0 2.6 3 0 0 3 3 2 1 CDC6, C terminal NUMOD1 PF07453.8 gi|20091252|ref|NP_617327.1| - 0.0066 16.2 1.1 4.7 7.2 0.1 2.9 2 0 0 2 2 2 0 NUMOD1 domain Penicillinase_R PF03965.11 gi|20091252|ref|NP_617327.1| - 0.0079 16.2 0.0 1.3 9.0 0.0 2.7 2 1 0 2 2 2 1 Penicillinase repressor HTH_34 PF13601.1 gi|20091252|ref|NP_617327.1| - 0.0097 15.9 0.2 1.5 8.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain FAM91_N PF14647.1 gi|20091252|ref|NP_617327.1| - 0.018 14.1 0.0 0.4 9.6 0.0 2.2 2 0 0 2 2 2 0 FAM91 N-terminus HTH_30 PF13556.1 gi|20091252|ref|NP_617327.1| - 0.018 14.5 0.0 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Phage_rep_O PF04492.8 gi|20091252|ref|NP_617327.1| - 0.023 14.8 0.0 2.7 8.2 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage replication protein O HTH_Tnp_ISL3 PF13542.1 gi|20091252|ref|NP_617327.1| - 0.026 13.7 0.0 5.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Nup35_RRM PF05172.8 gi|20091252|ref|NP_617327.1| - 0.031 14.0 0.2 0.12 12.1 0.1 1.9 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif HTH_3 PF01381.17 gi|20091252|ref|NP_617327.1| - 0.033 14.0 0.2 11 5.9 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix Rio2_N PF09202.6 gi|20091252|ref|NP_617327.1| - 0.037 14.1 0.0 2.1 8.4 0.0 2.4 2 0 0 2 2 2 0 Rio2, N-terminal DUF2582 PF10771.4 gi|20091252|ref|NP_617327.1| - 0.077 12.8 0.0 3.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2582) DUF4423 PF14394.1 gi|20091252|ref|NP_617327.1| - 0.12 11.8 0.1 2.4 7.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Sod_Cu PF00080.15 gi|20091253|ref|NP_617328.1| - 1e-43 148.8 0.9 1.2e-43 148.6 0.6 1.0 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) CTP_transf_2 PF01467.21 gi|20091254|ref|NP_617329.1| - 7.5e-08 32.5 0.0 1.5e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase GRASP55_65 PF04495.9 gi|20091254|ref|NP_617329.1| - 0.07 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain Redoxin PF08534.5 gi|20091254|ref|NP_617329.1| - 0.13 11.7 0.0 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 Redoxin B12-binding PF02310.14 gi|20091255|ref|NP_617330.1| - 2.3e-27 95.2 1.3 9.7e-27 93.2 0.3 2.0 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|20091255|ref|NP_617330.1| - 1.8e-20 72.7 0.4 3.8e-20 71.6 0.3 1.6 1 0 0 1 1 1 1 B12 binding domain ComA PF02679.10 gi|20091255|ref|NP_617330.1| - 0.01 14.8 1.3 0.084 11.8 0.0 2.3 1 1 1 2 2 2 1 (2R)-phospho-3-sulfolactate synthase (ComA) Dimeth_Pyl PF09505.5 gi|20091256|ref|NP_617331.1| - 0 1072.5 11.0 0 1072.3 7.6 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) XFP_C PF09363.5 gi|20091256|ref|NP_617331.1| - 0.023 14.1 0.1 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 XFP C-terminal domain AA_permease_2 PF13520.1 gi|20091257|ref|NP_617332.1| - 2.5e-65 220.6 48.9 2.9e-65 220.4 33.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|20091257|ref|NP_617332.1| - 4.9e-16 58.1 40.5 2.4e-15 55.8 28.1 1.8 1 1 0 1 1 1 1 Amino acid permease AAA_14 PF13173.1 gi|20091258|ref|NP_617333.1| - 1.9e-23 82.7 0.0 4e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|20091258|ref|NP_617333.1| - 6.6e-10 39.0 0.0 1e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|20091258|ref|NP_617333.1| - 0.00079 19.1 0.1 0.0068 16.1 0.1 2.4 1 1 1 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|20091258|ref|NP_617333.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_36 PF13730.1 gi|20091258|ref|NP_617333.1| - 0.1 12.7 0.1 0.22 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_10 PF12846.2 gi|20091258|ref|NP_617333.1| - 0.11 11.8 0.3 3 7.1 0.0 2.5 2 1 1 3 3 3 0 AAA-like domain DUF2082 PF09855.4 gi|20091259|ref|NP_617334.1| - 7.7e-07 28.8 1.6 5.3e-06 26.1 1.1 2.0 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|20091259|ref|NP_617334.1| - 0.0084 15.2 1.9 0.34 10.1 0.2 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|20091259|ref|NP_617334.1| - 0.011 15.2 4.0 0.027 13.9 0.4 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|20091259|ref|NP_617334.1| - 0.018 14.2 0.5 0.037 13.2 0.4 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|20091259|ref|NP_617334.1| - 0.033 14.5 1.9 0.059 13.6 1.3 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|20091259|ref|NP_617334.1| - 0.036 13.8 1.4 2.5 7.9 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|20091259|ref|NP_617334.1| - 0.061 12.6 5.5 1.2 8.5 4.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-RVT PF13966.1 gi|20091259|ref|NP_617334.1| - 0.093 13.0 0.3 0.79 10.0 0.0 2.0 1 1 1 2 2 2 0 zinc-binding in reverse transcriptase HypA PF01155.14 gi|20091259|ref|NP_617334.1| - 0.096 12.3 1.1 2.7 7.7 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|20091259|ref|NP_617334.1| - 0.1 12.4 4.6 0.11 12.2 0.6 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.3 gi|20091259|ref|NP_617334.1| - 0.11 12.4 0.6 4.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NRDD PF13597.1 gi|20091259|ref|NP_617334.1| - 0.2 9.6 0.9 0.19 9.7 0.6 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase A2L_zn_ribbon PF08792.5 gi|20091259|ref|NP_617334.1| - 0.54 9.7 4.9 3.4 7.2 0.1 2.6 3 0 0 3 3 3 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|20091259|ref|NP_617334.1| - 0.62 9.7 5.6 3 7.5 0.4 2.5 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-C2HC5 PF06221.8 gi|20091259|ref|NP_617334.1| - 3.9 7.3 6.4 10 5.9 1.1 2.5 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type MAF_flag10 PF01973.13 gi|20091261|ref|NP_617336.1| - 3.1e-34 117.9 0.0 3.8e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|20091261|ref|NP_617336.1| - 0.045 13.3 0.2 0.12 11.9 0.1 1.8 1 1 1 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain tRNA-synt_1 PF00133.17 gi|20091262|ref|NP_617337.1| - 4.7e-197 655.6 1.1 6.3e-197 655.2 0.7 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|20091262|ref|NP_617337.1| - 7.9e-37 126.3 0.2 2.1e-36 124.9 0.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|20091262|ref|NP_617337.1| - 2.7e-25 88.8 1.4 2.1e-10 39.8 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|20091262|ref|NP_617337.1| - 0.00011 21.4 0.0 0.00034 19.8 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|20091262|ref|NP_617337.1| - 0.0042 15.7 0.0 0.04 12.5 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|20091262|ref|NP_617337.1| - 0.0096 15.2 0.1 0.0096 15.2 0.0 2.4 3 1 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 ATP-synt PF00231.14 gi|20091264|ref|NP_617339.1| - 6.2e-55 186.5 0.0 7.1e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase ATP-synt_ab PF00006.20 gi|20091265|ref|NP_617340.1| - 6.3e-68 228.4 0.0 9.5e-68 227.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|20091265|ref|NP_617340.1| - 2.7e-17 63.2 0.0 1.1e-16 61.3 0.0 2.0 2 1 0 2 2 2 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|20091265|ref|NP_617340.1| - 8.2e-10 38.7 0.6 1.9e-09 37.6 0.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain KaiC PF06745.8 gi|20091265|ref|NP_617340.1| - 0.00091 18.3 0.0 0.0016 17.6 0.0 1.4 1 0 0 1 1 1 1 KaiC Arch_ATPase PF01637.13 gi|20091265|ref|NP_617340.1| - 0.025 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase ATP-synt_B PF00430.13 gi|20091266|ref|NP_617341.1| - 4.3e-16 58.9 23.0 4.3e-16 58.9 15.9 2.2 2 0 0 2 2 2 1 ATP synthase B/B' CF(0) DUF1510 PF07423.6 gi|20091266|ref|NP_617341.1| - 0.0076 15.6 23.5 0.087 12.1 3.9 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1510) DUF3435 PF11917.3 gi|20091266|ref|NP_617341.1| - 0.045 12.4 12.4 0.081 11.6 8.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Zip PF02535.17 gi|20091266|ref|NP_617341.1| - 0.52 9.2 1.2 0.89 8.5 0.1 1.8 2 0 0 2 2 2 0 ZIP Zinc transporter DUF4512 PF14975.1 gi|20091266|ref|NP_617341.1| - 2.6 8.9 10.9 0.98 10.2 0.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4512) Mitofilin PF09731.4 gi|20091266|ref|NP_617341.1| - 6.5 5.2 41.7 0.23 10.0 16.3 2.1 2 0 0 2 2 2 0 Mitochondrial inner membrane protein ATP-synt_C PF00137.16 gi|20091267|ref|NP_617342.1| - 1.1e-16 60.4 10.4 1.4e-16 60.1 7.2 1.2 1 0 0 1 1 1 1 ATP synthase subunit C PspC PF04024.7 gi|20091267|ref|NP_617342.1| - 0.13 11.7 1.2 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 PspC domain Bacteriocin_IId PF09221.5 gi|20091267|ref|NP_617342.1| - 0.65 9.9 7.4 0.1 12.5 2.7 1.4 2 0 0 2 2 2 0 Bacteriocin class IId cyclical uberolysin-like PetL PF05115.9 gi|20091267|ref|NP_617342.1| - 2.5 8.0 5.5 3.9 7.4 0.1 2.5 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) ATP-synt_A PF00119.15 gi|20091268|ref|NP_617343.1| - 1.7e-38 132.2 13.0 2e-38 132.0 9.0 1.0 1 0 0 1 1 1 1 ATP synthase A chain Form_Nir_trans PF01226.12 gi|20091268|ref|NP_617343.1| - 0.012 14.5 4.1 0.058 12.2 0.0 2.5 2 1 0 2 2 2 0 Formate/nitrite transporter AtpR PF12966.2 gi|20091269|ref|NP_617344.1| - 4e-31 107.0 12.6 4.8e-31 106.7 8.7 1.0 1 0 0 1 1 1 1 N-ATPase, AtpR subunit DUF4094 PF13334.1 gi|20091269|ref|NP_617344.1| - 0.49 10.8 4.1 0.95 9.8 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4094) DUF1049 PF06305.6 gi|20091269|ref|NP_617344.1| - 0.71 9.3 8.2 0.3 10.5 1.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1049) HAMP PF00672.20 gi|20091269|ref|NP_617344.1| - 2.4 8.3 5.3 1.9 8.7 0.1 2.4 2 0 0 2 2 2 0 HAMP domain DUF2892 PF11127.3 gi|20091269|ref|NP_617344.1| - 5.4 6.9 0.0 5.4 6.9 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) UPF0154 PF03672.8 gi|20091269|ref|NP_617344.1| - 5.6 6.6 7.0 11 5.6 0.0 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) DUF1212 PF06738.7 gi|20091269|ref|NP_617344.1| - 8.7 5.7 6.7 9 5.7 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) ATPase_gene1 PF09527.5 gi|20091270|ref|NP_617345.1| - 2.3e-15 56.1 9.5 3e-15 55.7 6.6 1.2 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit (ATPase_gene1) DUF4131 PF13567.1 gi|20091270|ref|NP_617345.1| - 0.01 15.2 0.1 0.013 14.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF347 PF03988.7 gi|20091270|ref|NP_617345.1| - 0.032 14.0 0.8 0.039 13.8 0.1 1.5 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) NfeD PF01957.13 gi|20091270|ref|NP_617345.1| - 0.033 14.3 0.2 0.065 13.3 0.1 1.4 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding ATP-synt_DE_N PF02823.11 gi|20091271|ref|NP_617346.1| - 1.4e-16 60.0 0.1 3.2e-16 58.8 0.0 1.6 2 0 0 2 2 2 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_ab PF00006.20 gi|20091272|ref|NP_617347.1| - 5.7e-64 215.5 0.0 8.3e-64 215.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|20091272|ref|NP_617347.1| - 2.3e-22 79.6 0.5 4.2e-22 78.7 0.3 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|20091272|ref|NP_617347.1| - 5.2e-13 49.0 0.1 1.1e-12 48.0 0.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_25 PF13481.1 gi|20091272|ref|NP_617347.1| - 0.007 15.7 0.0 0.017 14.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|20091272|ref|NP_617347.1| - 0.042 14.1 0.0 0.16 12.2 0.0 1.9 2 0 0 2 2 2 0 ABC transporter PPR_2 PF13041.1 gi|20091272|ref|NP_617347.1| - 0.063 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 PPR repeat family NB-ARC PF00931.17 gi|20091272|ref|NP_617347.1| - 0.19 10.5 0.5 0.4 9.4 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain TrwB_AAD_bind PF10412.4 gi|20091272|ref|NP_617347.1| - 0.2 10.2 0.2 0.45 9.0 0.1 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF1269 PF06897.7 gi|20091273|ref|NP_617348.1| - 1.5e-41 140.5 0.1 2.3e-41 139.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) DUF456 PF04306.8 gi|20091273|ref|NP_617348.1| - 0.0055 16.7 1.6 0.0074 16.3 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF456) Bacteriocin_IIc PF10439.4 gi|20091273|ref|NP_617348.1| - 5.6 7.1 11.0 15 5.7 7.6 1.7 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Acetyltransf_7 PF13508.1 gi|20091274|ref|NP_617349.1| - 8.8e-13 48.2 0.0 1.3e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20091274|ref|NP_617349.1| - 1.2e-12 47.6 0.1 1.8e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|20091274|ref|NP_617349.1| - 2e-06 27.8 0.0 3.1e-06 27.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|20091274|ref|NP_617349.1| - 0.00024 21.6 0.1 0.00089 19.7 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20091274|ref|NP_617349.1| - 0.00041 20.0 0.0 0.00068 19.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|20091274|ref|NP_617349.1| - 0.0052 16.6 0.0 0.019 14.7 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain KaiC PF06745.8 gi|20091275|ref|NP_617350.1| - 2.8e-63 213.0 0.0 3.2e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|20091275|ref|NP_617350.1| - 1.8e-06 27.4 0.0 2.7e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|20091275|ref|NP_617350.1| - 1.8e-05 23.2 0.1 0.00024 19.5 0.0 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|20091275|ref|NP_617350.1| - 9.5e-05 21.6 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DUF2075 PF09848.4 gi|20091275|ref|NP_617350.1| - 0.00047 19.2 0.0 0.0006 18.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|20091275|ref|NP_617350.1| - 0.006 16.7 0.2 0.036 14.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|20091275|ref|NP_617350.1| - 0.0097 15.6 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|20091275|ref|NP_617350.1| - 0.012 15.0 0.2 0.23 10.8 0.0 2.4 2 1 1 3 3 3 0 IstB-like ATP binding protein Zot PF05707.7 gi|20091275|ref|NP_617350.1| - 0.019 14.4 0.0 0.058 12.8 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ResIII PF04851.10 gi|20091275|ref|NP_617350.1| - 0.029 14.2 0.0 0.05 13.4 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|20091275|ref|NP_617350.1| - 0.049 13.5 0.1 0.17 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|20091275|ref|NP_617350.1| - 0.065 12.7 0.0 0.099 12.1 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain DnaB_C PF03796.10 gi|20091275|ref|NP_617350.1| - 0.065 12.1 0.0 0.093 11.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|20091275|ref|NP_617350.1| - 0.069 11.9 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein T2SE PF00437.15 gi|20091275|ref|NP_617350.1| - 0.074 11.9 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|20091275|ref|NP_617350.1| - 0.15 11.7 0.1 0.33 10.6 0.0 1.5 1 1 0 1 1 1 0 NTPase CobU PF02283.11 gi|20091275|ref|NP_617350.1| - 0.16 11.3 0.0 6.4 6.1 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Response_reg PF00072.19 gi|20091276|ref|NP_617351.1| - 7.3e-29 100.0 0.1 4.2e-28 97.5 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain Desmo_N PF06771.6 gi|20091276|ref|NP_617351.1| - 0.058 13.3 0.6 0.14 12.1 0.4 1.6 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus KaiC PF06745.8 gi|20091277|ref|NP_617352.1| - 7.5e-45 152.8 0.1 8.5e-45 152.6 0.1 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|20091277|ref|NP_617352.1| - 5.5e-07 28.9 0.7 1.8e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|20091277|ref|NP_617352.1| - 1.1e-06 27.3 0.0 1.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein NTPase_1 PF03266.10 gi|20091277|ref|NP_617352.1| - 3.9e-06 26.6 0.6 1.6e-05 24.7 0.4 1.9 1 1 0 1 1 1 1 NTPase IstB_IS21 PF01695.12 gi|20091277|ref|NP_617352.1| - 8.2e-06 25.3 0.2 0.00032 20.1 0.0 2.3 2 1 0 2 2 2 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|20091277|ref|NP_617352.1| - 1.2e-05 24.4 0.0 1.5e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|20091277|ref|NP_617352.1| - 2e-05 24.1 0.3 5.8e-05 22.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|20091277|ref|NP_617352.1| - 2e-05 23.6 0.0 0.00013 20.9 0.0 2.1 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain DEAD PF00270.24 gi|20091277|ref|NP_617352.1| - 4.6e-05 22.9 0.1 9.7e-05 21.9 0.0 1.7 2 1 0 2 2 1 1 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|20091277|ref|NP_617352.1| - 0.00012 21.7 0.0 0.00022 20.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|20091277|ref|NP_617352.1| - 0.00014 21.9 0.1 0.00035 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20091277|ref|NP_617352.1| - 0.00015 21.7 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Zot PF05707.7 gi|20091277|ref|NP_617352.1| - 0.00016 21.2 0.0 0.019 14.4 0.0 2.2 1 1 1 2 2 2 1 Zonular occludens toxin (Zot) cobW PF02492.14 gi|20091277|ref|NP_617352.1| - 0.00039 19.9 0.4 0.0014 18.0 0.3 1.9 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|20091277|ref|NP_617352.1| - 0.00041 20.2 0.1 0.0055 16.6 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|20091277|ref|NP_617352.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|20091277|ref|NP_617352.1| - 0.0018 17.8 0.7 0.014 14.9 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|20091277|ref|NP_617352.1| - 0.0037 17.4 0.6 0.034 14.3 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|20091277|ref|NP_617352.1| - 0.0084 15.0 0.0 0.024 13.5 0.0 1.7 1 1 1 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.10 gi|20091277|ref|NP_617352.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Arch_ATPase PF01637.13 gi|20091277|ref|NP_617352.1| - 0.015 15.0 0.0 0.02 14.6 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase Guanylate_kin PF00625.16 gi|20091277|ref|NP_617352.1| - 0.022 14.2 0.0 0.078 12.4 0.0 1.9 1 1 0 1 1 1 0 Guanylate kinase ArgK PF03308.11 gi|20091277|ref|NP_617352.1| - 0.026 13.3 0.4 4.1 6.0 0.0 2.1 2 0 0 2 2 2 0 ArgK protein AAA_18 PF13238.1 gi|20091277|ref|NP_617352.1| - 0.028 14.7 1.9 0.077 13.2 1.3 1.9 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|20091277|ref|NP_617352.1| - 0.062 12.2 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_28 PF13521.1 gi|20091277|ref|NP_617352.1| - 0.085 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|20091277|ref|NP_617352.1| - 0.12 13.2 1.5 0.29 11.9 1.1 1.6 1 0 0 1 1 1 0 AAA domain DUF4656 PF15551.1 gi|20091277|ref|NP_617352.1| - 0.15 11.2 0.1 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4656) AAA_29 PF13555.1 gi|20091277|ref|NP_617352.1| - 0.15 11.5 0.2 0.32 10.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrkA_N PF02254.13 gi|20091278|ref|NP_617353.1| - 1.6e-24 86.1 1.7 6.1e-24 84.2 0.1 2.1 2 1 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|20091278|ref|NP_617353.1| - 1.5e-14 53.2 0.0 3.2e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain XdhC_C PF13478.1 gi|20091278|ref|NP_617353.1| - 0.0097 16.2 0.0 0.034 14.4 0.0 1.9 2 1 0 2 2 2 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|20091278|ref|NP_617353.1| - 0.011 15.6 0.3 0.021 14.6 0.1 1.7 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|20091279|ref|NP_617354.1| - 4.7e-23 81.3 1.5 7.4e-23 80.7 0.8 1.6 2 0 0 2 2 2 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|20091279|ref|NP_617354.1| - 2.6e-14 52.7 9.6 4.5e-14 51.9 6.7 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.16 gi|20091279|ref|NP_617354.1| - 4.3e-12 45.4 0.0 2.5e-11 43.0 0.0 2.3 3 0 0 3 3 3 1 TrkA-C domain Ion_trans PF00520.26 gi|20091279|ref|NP_617354.1| - 0.019 14.2 3.6 0.031 13.5 2.5 1.3 1 0 0 1 1 1 0 Ion transport protein Peptidase_A24 PF01478.13 gi|20091279|ref|NP_617354.1| - 0.13 12.4 4.1 0.2 11.8 2.8 1.3 1 0 0 1 1 1 0 Type IV leader peptidase family Peptidase_M50 PF02163.17 gi|20091280|ref|NP_617355.1| - 7.6e-28 96.7 0.0 7.9e-27 93.4 0.0 2.3 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|20091280|ref|NP_617355.1| - 1.8e-15 56.5 0.0 3.2e-08 33.3 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.19 gi|20091280|ref|NP_617355.1| - 4.2e-06 26.8 0.0 0.025 14.7 0.0 2.5 2 0 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|20091280|ref|NP_617355.1| - 0.043 13.7 0.0 0.85 9.5 0.0 2.4 2 0 0 2 2 2 0 PDZ-like domain Tricorn_PDZ PF14685.1 gi|20091280|ref|NP_617355.1| - 0.045 13.5 0.0 9.2 6.1 0.0 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain GRASP55_65 PF04495.9 gi|20091280|ref|NP_617355.1| - 0.11 12.4 0.1 3.9 7.4 0.0 2.6 1 1 1 2 2 2 0 GRASP55/65 PDZ-like domain DUF912 PF06024.7 gi|20091280|ref|NP_617355.1| - 0.38 10.8 2.7 7.1 6.7 0.0 3.1 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) CutA1 PF03091.10 gi|20091281|ref|NP_617356.1| - 6.7e-29 99.5 0.2 7.3e-29 99.4 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein ResIII PF04851.10 gi|20091282|ref|NP_617357.1| - 2.6e-10 40.4 0.0 3.9e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2989 PF11207.3 gi|20091283|ref|NP_617358.1| - 2.3e-05 23.9 0.8 0.085 12.2 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2989) Glyco_hydro_31 PF01055.21 gi|20091283|ref|NP_617358.1| - 0.015 14.1 0.1 0.015 14.1 0.1 1.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 31 DUF615 PF04751.9 gi|20091283|ref|NP_617358.1| - 0.036 13.7 0.1 0.29 10.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF615) Sec2p PF06428.6 gi|20091283|ref|NP_617358.1| - 0.041 13.7 1.5 0.14 12.0 1.0 2.0 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF2811 PF10929.3 gi|20091283|ref|NP_617358.1| - 0.044 13.7 1.0 72 3.5 0.0 4.3 5 0 0 5 5 5 0 Protein of unknown function (DUF2811) L31 PF09784.4 gi|20091284|ref|NP_617359.1| - 0.0075 16.3 0.7 0.023 14.7 0.4 2.0 1 1 0 1 1 1 1 Mitochondrial ribosomal protein L31 LETM1 PF07766.8 gi|20091284|ref|NP_617359.1| - 0.056 12.4 2.1 0.07 12.1 0.2 1.8 1 1 1 2 2 2 0 LETM1-like protein DUF148 PF02520.12 gi|20091284|ref|NP_617359.1| - 0.06 13.1 2.0 0.89 9.3 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function DUF148 Laminin_II PF06009.7 gi|20091284|ref|NP_617359.1| - 0.3 10.8 2.0 0.81 9.4 0.2 2.1 2 0 0 2 2 2 0 Laminin Domain II VWA PF00092.23 gi|20091285|ref|NP_617360.1| - 4.1e-20 72.2 0.2 8.2e-20 71.2 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|20091285|ref|NP_617360.1| - 9.5e-15 55.1 0.2 1.6e-14 54.3 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain SBP_bac_11 PF13531.1 gi|20091285|ref|NP_617360.1| - 2.8e-12 46.7 0.0 4.3e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VWA_3 PF13768.1 gi|20091285|ref|NP_617360.1| - 0.016 14.9 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain Cornichon PF03311.9 gi|20091285|ref|NP_617360.1| - 0.068 13.3 0.6 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Cornichon protein TelA PF05816.6 gi|20091286|ref|NP_617361.1| - 3.5e-84 282.3 24.0 4.6e-84 281.9 16.7 1.2 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) bPH_4 PF06713.6 gi|20091286|ref|NP_617361.1| - 0.055 13.3 0.4 0.14 12.0 0.3 1.6 1 0 0 1 1 1 0 Bacterial PH domain PNK3P PF08645.6 gi|20091286|ref|NP_617361.1| - 2.6 7.4 8.1 0.3 10.5 1.2 2.3 2 1 1 3 3 3 0 Polynucleotide kinase 3 phosphatase NosD PF05048.8 gi|20091288|ref|NP_617363.1| - 2.6e-47 160.9 31.8 2.6e-47 160.9 22.1 2.1 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091288|ref|NP_617363.1| - 1.1e-22 80.4 93.6 2.7e-11 43.4 17.3 2.9 1 1 2 3 3 3 3 Right handed beta helix region Thioredoxin PF00085.15 gi|20091288|ref|NP_617363.1| - 9.8e-11 41.2 0.0 1.9e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Pectinesterase PF01095.14 gi|20091288|ref|NP_617363.1| - 0.0009 17.8 0.1 0.002 16.7 0.1 1.5 1 0 0 1 1 1 1 Pectinesterase Thioredoxin_8 PF13905.1 gi|20091288|ref|NP_617363.1| - 0.001 19.1 0.0 0.0027 17.8 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like DIM1 PF02966.11 gi|20091288|ref|NP_617363.1| - 0.012 15.1 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_3 PF13192.1 gi|20091288|ref|NP_617363.1| - 0.012 15.4 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|20091288|ref|NP_617363.1| - 0.015 15.2 0.0 0.047 13.7 0.0 1.8 2 0 0 2 2 1 0 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|20091288|ref|NP_617363.1| - 0.022 14.9 0.0 0.11 12.6 0.0 2.2 3 0 0 3 3 3 0 Thioredoxin-like domain Thioredoxin_6 PF13848.1 gi|20091288|ref|NP_617363.1| - 0.035 13.8 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredox_DsbH PF03190.10 gi|20091288|ref|NP_617363.1| - 0.057 13.1 0.0 0.72 9.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF255 Redoxin PF08534.5 gi|20091288|ref|NP_617363.1| - 0.091 12.3 0.0 0.24 10.9 0.0 1.8 1 0 0 1 1 1 0 Redoxin AhpC-TSA PF00578.16 gi|20091288|ref|NP_617363.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family DUF1077 PF06417.7 gi|20091288|ref|NP_617363.1| - 0.27 10.5 0.8 0.47 9.7 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) PPDK_N PF01326.14 gi|20091289|ref|NP_617364.1| - 5.3e-93 311.6 0.0 1.1e-92 310.6 0.0 1.4 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|20091289|ref|NP_617364.1| - 7.1e-22 76.7 0.0 1.6e-21 75.6 0.0 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HNOBA PF07701.9 gi|20091289|ref|NP_617364.1| - 0.085 12.0 0.2 0.22 10.7 0.0 1.7 2 0 0 2 2 2 0 Heme NO binding associated DUF964 PF06133.6 gi|20091289|ref|NP_617364.1| - 9 6.3 7.4 3.6 7.6 0.1 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF964) Toxin_64 PF15542.1 gi|20091290|ref|NP_617365.1| - 2.4 8.8 6.0 1.6 9.3 1.1 2.3 1 1 2 3 3 3 0 Putative toxin 64 DUF3357 PF11837.3 gi|20091292|ref|NP_617367.1| - 0.025 14.4 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) Glyco_tranf_2_3 PF13641.1 gi|20091293|ref|NP_617368.1| - 7.4e-42 143.6 0.0 1e-41 143.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|20091293|ref|NP_617368.1| - 8e-39 133.0 0.1 1.1e-38 132.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|20091293|ref|NP_617368.1| - 7.6e-19 68.1 8.6 4.9e-18 65.5 6.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|20091293|ref|NP_617368.1| - 2.2e-18 66.1 0.0 4e-18 65.2 0.0 1.4 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|20091293|ref|NP_617368.1| - 4.2e-15 55.5 0.0 4.4e-14 52.2 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20091293|ref|NP_617368.1| - 0.00041 20.5 0.0 0.00095 19.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Chitin_synth_2 PF03142.10 gi|20091293|ref|NP_617368.1| - 0.0027 16.1 11.9 0.43 8.9 0.0 3.1 3 0 0 3 3 3 2 Chitin synthase Glyco_tranf_2_5 PF13712.1 gi|20091293|ref|NP_617368.1| - 0.0054 15.9 0.1 1.8 7.7 0.0 2.6 2 1 1 3 3 3 2 Glycosyltransferase like family GNT-I PF03071.10 gi|20091293|ref|NP_617368.1| - 0.048 12.2 0.1 0.07 11.6 0.1 1.1 1 0 0 1 1 1 0 GNT-I family ATPgrasp_Ter PF15632.1 gi|20091294|ref|NP_617369.1| - 1.8e-18 66.4 0.0 2.6e-16 59.3 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|20091294|ref|NP_617369.1| - 2.2e-18 66.6 0.0 2.8e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|20091294|ref|NP_617369.1| - 7.1e-17 61.7 0.0 9.8e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|20091294|ref|NP_617369.1| - 3.2e-09 36.5 0.0 1e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|20091294|ref|NP_617369.1| - 0.014 14.8 0.1 0.12 11.7 0.0 2.2 1 1 2 3 3 3 0 D-ala D-ala ligase C-terminus NAD_binding_10 PF13460.1 gi|20091294|ref|NP_617369.1| - 0.18 11.7 1.7 0.39 10.7 0.1 2.0 2 0 0 2 2 2 0 NADH(P)-binding PIG-L PF02585.12 gi|20091295|ref|NP_617370.1| - 1.3e-27 96.8 0.1 2.7e-27 95.7 0.1 1.5 2 0 0 2 2 2 1 GlcNAc-PI de-N-acetylase Glycos_transf_2 PF00535.21 gi|20091296|ref|NP_617371.1| - 3.5e-19 69.1 0.0 4.6e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20091296|ref|NP_617371.1| - 1.6e-06 28.1 0.0 1.8e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20091296|ref|NP_617371.1| - 0.00018 21.7 0.0 0.00027 21.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 DHH PF01368.15 gi|20091296|ref|NP_617371.1| - 0.067 12.8 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 DHH family PEMT PF04191.8 gi|20091298|ref|NP_617373.1| - 3.1e-17 62.6 2.5 3.1e-17 62.6 1.7 2.3 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|20091298|ref|NP_617373.1| - 6.8e-08 32.6 0.4 6.8e-08 32.6 0.3 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|20091298|ref|NP_617373.1| - 0.0016 17.0 1.8 0.0024 16.4 0.0 1.9 1 1 0 2 2 2 1 Ergosterol biosynthesis ERG4/ERG24 family UPF0104 PF03706.8 gi|20091298|ref|NP_617373.1| - 0.002 17.4 5.8 0.002 17.4 4.0 2.9 1 1 2 3 3 3 1 Uncharacterised protein family (UPF0104) DUF4131 PF13567.1 gi|20091298|ref|NP_617373.1| - 0.17 11.2 11.4 0.84 9.0 2.6 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF4381 PF14316.1 gi|20091298|ref|NP_617373.1| - 2.4 8.2 6.6 3 7.9 0.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) LCM PF04072.9 gi|20091299|ref|NP_617374.1| - 4.7e-47 159.9 0.0 6.1e-47 159.5 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase CMD PF02627.15 gi|20091300|ref|NP_617375.1| - 2.1e-12 46.6 0.2 5.4e-12 45.3 0.2 1.6 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Terminase_5 PF06056.7 gi|20091301|ref|NP_617376.1| - 1.1e-06 28.1 0.0 1.6e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|20091301|ref|NP_617376.1| - 1.8e-06 27.3 0.0 3.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091301|ref|NP_617376.1| - 2.4e-05 24.2 0.0 4.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091301|ref|NP_617376.1| - 0.0015 18.6 0.0 0.0024 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|20091301|ref|NP_617376.1| - 0.0032 17.3 0.0 0.0051 16.7 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|20091301|ref|NP_617376.1| - 0.0056 16.2 0.0 0.025 14.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain zf-Mss51 PF13824.1 gi|20091301|ref|NP_617376.1| - 0.0072 16.1 2.2 0.014 15.2 1.5 1.5 1 0 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20091301|ref|NP_617376.1| - 0.0079 15.6 9.8 0.016 14.7 6.8 1.5 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.7 gi|20091301|ref|NP_617376.1| - 0.0088 15.4 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2387 PF09526.5 gi|20091301|ref|NP_617376.1| - 0.026 14.4 1.2 0.049 13.5 0.8 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF1670 PF07900.6 gi|20091301|ref|NP_617376.1| - 0.035 13.3 0.1 0.044 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) PolC_DP2 PF03833.8 gi|20091301|ref|NP_617376.1| - 0.049 11.3 0.2 0.046 11.4 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.5 gi|20091301|ref|NP_617376.1| - 0.086 12.8 3.7 0.8 9.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20091301|ref|NP_617376.1| - 0.1 12.4 8.0 0.16 11.7 5.5 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|20091301|ref|NP_617376.1| - 0.3 10.9 3.3 1 9.2 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin zinc-ribbons_6 PF07191.7 gi|20091301|ref|NP_617376.1| - 0.34 10.7 3.2 0.66 9.8 1.5 1.9 2 0 0 2 2 2 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|20091301|ref|NP_617376.1| - 2.5 7.8 7.2 3.8 7.2 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.4 gi|20091301|ref|NP_617376.1| - 4.3 6.4 6.5 2.9 6.9 3.0 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com TF_Zn_Ribbon PF08271.7 gi|20091301|ref|NP_617376.1| - 6.1 6.2 6.1 4.4 6.6 1.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|20091301|ref|NP_617376.1| - 9.7 5.9 7.3 8.1 6.1 0.7 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DDE_Tnp_IS1 PF03400.8 gi|20091302|ref|NP_617377.1| - 8.6e-14 51.7 0.3 9.9e-14 51.5 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase ABC_tran PF00005.22 gi|20091303|ref|NP_617378.1| - 9.8e-33 113.3 0.0 2e-32 112.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|20091303|ref|NP_617378.1| - 1.4e-11 44.3 9.1 2.3e-11 43.6 6.3 1.4 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|20091303|ref|NP_617378.1| - 7.8e-06 25.2 0.0 4.6e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|20091303|ref|NP_617378.1| - 5.7e-05 23.9 0.0 0.00014 22.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20091303|ref|NP_617378.1| - 7.3e-05 22.8 0.2 0.00011 22.1 0.2 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|20091303|ref|NP_617378.1| - 0.00067 19.7 0.0 1 9.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|20091303|ref|NP_617378.1| - 0.0017 17.5 0.0 0.0038 16.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|20091303|ref|NP_617378.1| - 0.015 14.7 0.1 0.04 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|20091303|ref|NP_617378.1| - 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20091303|ref|NP_617378.1| - 0.038 14.1 0.1 0.19 11.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|20091303|ref|NP_617378.1| - 0.061 12.5 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|20091303|ref|NP_617378.1| - 0.09 12.4 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|20091303|ref|NP_617378.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase PixA PF12306.3 gi|20091303|ref|NP_617378.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Inclusion body protein MobB PF03205.9 gi|20091303|ref|NP_617378.1| - 0.12 12.0 0.0 0.33 10.6 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|20091303|ref|NP_617378.1| - 0.12 11.7 1.8 0.64 9.3 1.2 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|20091304|ref|NP_617379.1| - 1.9e-32 112.3 0.0 3e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|20091304|ref|NP_617379.1| - 1.8e-14 53.8 4.6 2.2e-14 53.5 3.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|20091304|ref|NP_617379.1| - 3.1e-07 29.8 0.0 1.2e-05 24.6 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20091304|ref|NP_617379.1| - 0.00013 22.0 0.0 0.00027 21.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|20091304|ref|NP_617379.1| - 0.0022 17.1 0.0 0.0054 15.8 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|20091304|ref|NP_617379.1| - 0.0042 16.5 0.1 0.011 15.2 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Tmemb_170 PF10190.4 gi|20091304|ref|NP_617379.1| - 0.018 15.0 0.3 0.018 15.0 0.2 2.2 3 0 0 3 3 2 0 Putative transmembrane protein 170 AAA_21 PF13304.1 gi|20091304|ref|NP_617379.1| - 0.032 14.2 0.0 3 7.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|20091304|ref|NP_617379.1| - 0.058 12.7 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|20091304|ref|NP_617379.1| - 0.07 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|20091304|ref|NP_617379.1| - 0.083 12.8 0.1 0.68 9.8 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit oligo_HPY PF08352.7 gi|20091305|ref|NP_617380.1| - 1.1e-18 67.2 0.1 3.2e-18 65.8 0.1 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region ABC_tran PF00005.22 gi|20091305|ref|NP_617380.1| - 1.2e-13 51.5 0.0 1.8e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091305|ref|NP_617380.1| - 0.00023 21.2 0.0 0.00041 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091305|ref|NP_617380.1| - 0.00044 19.5 0.0 0.00059 19.1 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Methyltransf_11 PF08241.7 gi|20091306|ref|NP_617381.1| - 1e-23 83.6 0.0 1.8e-23 82.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091306|ref|NP_617381.1| - 3.6e-20 72.0 0.0 4.3e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091306|ref|NP_617381.1| - 5.7e-15 55.4 0.0 8.4e-15 54.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091306|ref|NP_617381.1| - 1.9e-14 54.2 0.0 4.6e-14 52.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091306|ref|NP_617381.1| - 4.6e-12 46.2 0.0 9.2e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091306|ref|NP_617381.1| - 3.9e-11 43.2 0.0 6.9e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091306|ref|NP_617381.1| - 1.2e-10 40.9 0.0 1.8e-10 40.3 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20091306|ref|NP_617381.1| - 9.9e-07 28.8 0.0 2.2e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|20091306|ref|NP_617381.1| - 0.0011 18.3 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.6 gi|20091306|ref|NP_617381.1| - 0.0026 17.1 0.0 0.0039 16.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|20091306|ref|NP_617381.1| - 0.0044 15.7 0.0 0.0098 14.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) DREV PF05219.7 gi|20091306|ref|NP_617381.1| - 0.0089 14.9 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.9 gi|20091306|ref|NP_617381.1| - 0.025 13.9 0.0 0.058 12.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase small domain TPMT PF05724.6 gi|20091306|ref|NP_617381.1| - 0.11 11.8 0.0 0.4 10.0 0.0 2.0 2 1 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) SBP_bac_5 PF00496.17 gi|20091307|ref|NP_617382.1| - 7.6e-71 238.9 2.4 1e-70 238.4 1.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RRM_1 PF00076.17 gi|20091307|ref|NP_617382.1| - 0.027 14.1 0.2 0.076 12.6 0.0 1.8 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SBP_bac_5 PF00496.17 gi|20091308|ref|NP_617383.1| - 9.1e-74 248.5 7.1 1.2e-73 248.1 4.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle GFRP PF06399.8 gi|20091308|ref|NP_617383.1| - 0.016 14.7 0.1 0.22 11.1 0.0 2.7 3 0 0 3 3 3 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) ABC_tran PF00005.22 gi|20091309|ref|NP_617384.1| - 1.7e-27 96.4 0.0 2.2e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091309|ref|NP_617384.1| - 2.2e-06 27.8 0.2 0.00016 21.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20091309|ref|NP_617384.1| - 7e-05 22.8 0.2 0.00014 21.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|20091309|ref|NP_617384.1| - 0.00044 20.4 0.0 0.0013 18.8 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|20091309|ref|NP_617384.1| - 0.00064 19.2 0.6 1.2 8.5 0.2 2.7 1 1 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|20091309|ref|NP_617384.1| - 0.0014 17.8 1.4 0.016 14.4 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20091309|ref|NP_617384.1| - 0.0031 17.6 0.1 0.014 15.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20091309|ref|NP_617384.1| - 0.0034 16.5 0.0 0.0055 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20091309|ref|NP_617384.1| - 0.0045 17.8 0.0 0.0094 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20091309|ref|NP_617384.1| - 0.0095 16.2 0.1 0.027 14.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|20091309|ref|NP_617384.1| - 0.014 15.6 0.0 0.062 13.6 0.0 2.0 2 0 0 2 2 2 0 Oligopeptide/dipeptide transporter, C-terminal region AAA_14 PF13173.1 gi|20091309|ref|NP_617384.1| - 0.015 15.1 0.0 0.32 10.8 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|20091309|ref|NP_617384.1| - 0.026 14.0 0.0 0.056 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|20091309|ref|NP_617384.1| - 0.037 12.5 0.0 0.52 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|20091309|ref|NP_617384.1| - 0.04 13.3 0.0 0.069 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|20091309|ref|NP_617384.1| - 0.042 13.5 0.1 0.32 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.1 gi|20091309|ref|NP_617384.1| - 0.046 12.7 0.3 0.6 9.1 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|20091309|ref|NP_617384.1| - 0.15 11.1 0.0 0.32 10.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|20091309|ref|NP_617384.1| - 0.62 9.7 2.5 3.7 7.1 0.2 2.4 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|20091310|ref|NP_617385.1| - 4.9e-20 72.2 0.0 7.9e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20091310|ref|NP_617385.1| - 3.1e-13 49.8 0.2 6.3e-13 48.8 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20091310|ref|NP_617385.1| - 2.1e-05 24.6 0.0 0.00054 20.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20091310|ref|NP_617385.1| - 0.00084 18.6 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20091310|ref|NP_617385.1| - 0.0094 15.9 0.1 0.017 15.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|20091310|ref|NP_617385.1| - 0.042 13.3 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|20091310|ref|NP_617385.1| - 0.046 13.2 0.0 0.1 12.0 0.0 1.6 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|20091310|ref|NP_617385.1| - 0.095 12.8 0.1 0.28 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20091310|ref|NP_617385.1| - 0.1 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain BPD_transp_1 PF00528.17 gi|20091311|ref|NP_617386.1| - 3.2e-19 69.1 11.0 3.2e-19 69.1 7.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20091311|ref|NP_617386.1| - 1.7e-06 27.2 0.0 1.7e-06 27.2 0.0 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C HOK_GEF PF01848.11 gi|20091311|ref|NP_617386.1| - 0.019 14.3 1.5 0.059 12.7 1.0 1.9 1 0 0 1 1 1 0 Hok/gef family BPD_transp_1 PF00528.17 gi|20091312|ref|NP_617387.1| - 1.6e-31 109.2 18.4 1.6e-31 109.2 12.8 1.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component WaaY PF06176.6 gi|20091312|ref|NP_617387.1| - 0.096 11.8 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) SBP_bac_5 PF00496.17 gi|20091313|ref|NP_617388.1| - 3e-69 233.6 6.9 3.6e-69 233.3 4.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Sensor PF13796.1 gi|20091314|ref|NP_617389.1| - 0.017 14.6 5.3 0.019 14.5 3.7 1.2 1 0 0 1 1 1 0 Putative sensor BPD_transp_1 PF00528.17 gi|20091315|ref|NP_617390.1| - 4.8e-35 120.7 22.3 4.8e-35 120.7 15.5 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component PIG-P PF08510.7 gi|20091315|ref|NP_617390.1| - 0.99 9.0 4.7 2.8 7.6 3.3 1.8 1 0 0 1 1 1 0 PIG-P DUF846 PF05832.7 gi|20091315|ref|NP_617390.1| - 1.1 8.9 9.2 12 5.6 3.5 3.6 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF846) Methyltransf_31 PF13847.1 gi|20091316|ref|NP_617391.1| - 9.7e-09 34.9 0.0 4.8e-08 32.7 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091316|ref|NP_617391.1| - 2.4e-08 34.5 0.0 5.8e-08 33.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091316|ref|NP_617391.1| - 4.6e-07 29.7 0.0 9.9e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091316|ref|NP_617391.1| - 1.1e-06 28.9 0.0 2.3e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091316|ref|NP_617391.1| - 1.3e-06 28.7 0.0 4.5e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|20091316|ref|NP_617391.1| - 2.1e-05 23.9 0.0 3.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20091316|ref|NP_617391.1| - 5.9e-05 23.0 0.0 0.00012 22.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain TehB PF03848.9 gi|20091316|ref|NP_617391.1| - 0.00062 18.9 0.0 0.00097 18.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|20091316|ref|NP_617391.1| - 0.00069 18.7 0.0 0.001 18.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|20091316|ref|NP_617391.1| - 0.0016 18.9 0.0 0.003 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091316|ref|NP_617391.1| - 0.015 14.4 0.0 0.021 13.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF938 PF06080.7 gi|20091316|ref|NP_617391.1| - 0.084 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MetW PF07021.7 gi|20091316|ref|NP_617391.1| - 0.11 11.8 0.0 0.15 11.3 0.0 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|20091316|ref|NP_617391.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SBP_bac_5 PF00496.17 gi|20091317|ref|NP_617392.1| - 1.1e-79 268.0 6.5 1.5e-79 267.5 4.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.22 gi|20091319|ref|NP_617394.1| - 1.9e-32 112.4 0.0 2.6e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091319|ref|NP_617394.1| - 8.8e-11 42.2 0.0 5.2e-09 36.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091319|ref|NP_617394.1| - 1.4e-09 37.5 0.2 3.4e-08 32.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mac PF12464.3 gi|20091319|ref|NP_617394.1| - 3e-05 23.9 0.4 0.001 19.0 0.0 2.2 2 0 0 2 2 2 1 Maltose acetyltransferase AAA_29 PF13555.1 gi|20091319|ref|NP_617394.1| - 4.1e-05 23.0 0.1 8.4e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|20091319|ref|NP_617394.1| - 0.00029 20.2 0.1 0.0052 16.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|20091319|ref|NP_617394.1| - 0.00035 20.1 0.9 0.002 17.6 0.2 2.0 1 1 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|20091319|ref|NP_617394.1| - 0.00062 19.9 0.3 0.0048 17.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20091319|ref|NP_617394.1| - 0.00096 19.1 0.1 0.0026 17.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|20091319|ref|NP_617394.1| - 0.0016 18.7 0.1 0.0021 18.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20091319|ref|NP_617394.1| - 0.0017 17.4 0.0 0.25 10.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|20091319|ref|NP_617394.1| - 0.0042 16.3 0.0 0.0074 15.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20091319|ref|NP_617394.1| - 0.005 17.6 0.2 0.011 16.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|20091319|ref|NP_617394.1| - 0.0059 16.4 0.5 0.012 15.4 0.3 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF87 RNA12 PF10443.4 gi|20091319|ref|NP_617394.1| - 0.022 13.2 0.0 0.045 12.2 0.0 1.5 2 0 0 2 2 2 0 RNA12 protein AAA_33 PF13671.1 gi|20091319|ref|NP_617394.1| - 0.039 13.8 0.3 0.063 13.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20091319|ref|NP_617394.1| - 0.042 14.1 2.4 0.29 11.4 0.2 2.4 1 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|20091319|ref|NP_617394.1| - 0.042 12.9 0.0 0.097 11.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin MobB PF03205.9 gi|20091319|ref|NP_617394.1| - 0.048 13.3 0.0 0.099 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|20091319|ref|NP_617394.1| - 0.059 13.0 0.0 0.18 11.4 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|20091319|ref|NP_617394.1| - 0.085 12.8 0.8 0.41 10.6 0.6 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|20091319|ref|NP_617394.1| - 0.087 12.7 0.0 0.39 10.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|20091319|ref|NP_617394.1| - 0.14 12.0 0.0 1.1 9.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MacB_PCD PF12704.2 gi|20091320|ref|NP_617395.1| - 1.5e-29 103.2 1.2 2.3e-29 102.6 0.8 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20091320|ref|NP_617395.1| - 4.7e-25 87.6 9.8 4.7e-25 87.6 6.8 2.1 2 0 0 2 2 2 1 FtsX-like permease family DUF4064 PF13273.1 gi|20091320|ref|NP_617395.1| - 0.72 9.9 9.9 0.094 12.8 0.9 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) Herpes_US9 PF06072.6 gi|20091320|ref|NP_617395.1| - 4.9 7.0 6.6 1.3 8.9 0.5 2.6 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 MacB_PCD PF12704.2 gi|20091321|ref|NP_617396.1| - 8.8e-30 104.0 0.7 8.8e-30 104.0 0.5 2.4 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|20091321|ref|NP_617396.1| - 5.5e-17 61.6 14.6 5.5e-17 61.6 10.1 2.0 2 0 0 2 2 2 1 FtsX-like permease family Glyco_hydro_2 PF00703.16 gi|20091322|ref|NP_617397.1| - 0.00039 20.8 0.1 0.83 10.1 0.0 2.8 3 0 0 3 3 3 2 Glycosyl hydrolases family 2 DUF1189 PF06691.6 gi|20091322|ref|NP_617397.1| - 0.044 13.0 0.1 0.066 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) MULE PF10551.4 gi|20091323|ref|NP_617398.1| - 9.2e-13 48.1 0.1 2.1e-12 47.0 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain LOH1CR12 PF10158.4 gi|20091323|ref|NP_617398.1| - 0.019 14.7 0.1 0.052 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein Transposase_mut PF00872.13 gi|20091323|ref|NP_617398.1| - 0.02 13.4 0.0 0.031 12.8 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_ISL3 PF01610.12 gi|20091323|ref|NP_617398.1| - 0.037 13.6 0.5 0.052 13.1 0.3 1.3 1 0 0 1 1 1 0 Transposase C1_1 PF00130.17 gi|20091323|ref|NP_617398.1| - 0.038 13.7 1.0 0.11 12.2 0.7 1.6 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) ADK_lid PF05191.9 gi|20091323|ref|NP_617398.1| - 0.11 12.1 2.4 4.9 6.8 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091323|ref|NP_617398.1| - 2.9 8.2 10.8 0.25 11.6 2.7 2.9 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091323|ref|NP_617398.1| - 9.2 6.0 7.5 3.5 7.3 2.5 2.3 2 1 0 2 2 2 0 PHD-finger TetR_N PF00440.18 gi|20091324|ref|NP_617399.1| - 2.3e-13 49.5 0.0 3.9e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family FluMu_gp41 PF10109.4 gi|20091324|ref|NP_617399.1| - 0.029 14.2 0.1 0.71 9.8 0.0 2.4 2 0 0 2 2 2 0 Mu-like prophage FluMu protein gp41 LacI PF00356.16 gi|20091324|ref|NP_617399.1| - 0.042 13.4 0.1 0.094 12.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family MULE PF10551.4 gi|20091325|ref|NP_617400.1| - 8e-11 41.9 0.0 2e-10 40.7 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20091325|ref|NP_617400.1| - 0.00083 18.6 2.0 0.0032 16.7 1.4 1.8 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20091325|ref|NP_617400.1| - 0.056 13.2 1.2 0.15 11.8 0.2 1.9 1 1 0 2 2 2 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20091325|ref|NP_617400.1| - 0.18 12.1 2.4 0.74 10.1 1.7 2.0 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|20091325|ref|NP_617400.1| - 0.24 10.7 2.8 1.3 8.4 0.4 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|20091325|ref|NP_617400.1| - 0.26 10.9 2.6 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.1 gi|20091325|ref|NP_617400.1| - 0.3 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M3_N PF08439.5 gi|20091325|ref|NP_617400.1| - 0.46 10.5 4.8 0.31 11.1 1.0 2.5 2 1 0 2 2 2 0 Oligopeptidase F FMN_red PF03358.10 gi|20091326|ref|NP_617401.1| - 9e-26 90.2 0.0 1.3e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20091326|ref|NP_617401.1| - 2.7e-14 53.1 0.0 3.5e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold RecR PF02132.10 gi|20091326|ref|NP_617401.1| - 0.013 14.9 2.6 0.029 13.8 1.5 1.7 2 0 0 2 2 2 0 RecR protein DUF169 PF02596.10 gi|20091327|ref|NP_617402.1| - 1.2e-35 122.8 0.0 1.5e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Fumerase PF05681.9 gi|20091328|ref|NP_617403.1| - 4.5e-98 327.6 0.0 5e-98 327.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|20091329|ref|NP_617404.1| - 6.3e-54 182.2 0.1 7.1e-54 182.0 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF1724 PF08350.5 gi|20091330|ref|NP_617405.1| - 9.1e-16 57.1 0.0 2e-15 56.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR_2 PF12802.2 gi|20091330|ref|NP_617405.1| - 2.3e-05 23.9 0.0 8.4e-05 22.1 0.0 1.9 3 0 0 3 3 3 1 MarR family TrmB PF01978.14 gi|20091330|ref|NP_617405.1| - 0.0049 16.5 0.0 0.0094 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20091330|ref|NP_617405.1| - 0.0056 16.4 0.0 0.019 14.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|20091330|ref|NP_617405.1| - 0.0093 15.5 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.1 gi|20091330|ref|NP_617405.1| - 0.01 15.1 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20091330|ref|NP_617405.1| - 0.023 14.3 0.0 0.057 13.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20091330|ref|NP_617405.1| - 0.051 13.9 0.0 0.089 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rhodanese PF00581.15 gi|20091331|ref|NP_617406.1| - 3.1e-20 72.6 0.0 4.6e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain DUF4330 PF14221.1 gi|20091331|ref|NP_617406.1| - 0.088 12.6 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) E1-E2_ATPase PF00122.15 gi|20091332|ref|NP_617407.1| - 2.2e-62 210.1 5.0 2.2e-62 210.1 3.4 3.3 3 1 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|20091332|ref|NP_617407.1| - 4.5e-32 112.2 0.4 3.8e-31 109.1 0.3 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|20091332|ref|NP_617407.1| - 1.9e-29 102.4 6.1 1.9e-29 102.4 4.2 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|20091332|ref|NP_617407.1| - 4.9e-21 73.9 0.1 1e-20 72.9 0.1 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|20091332|ref|NP_617407.1| - 9.3e-19 67.1 0.0 1.7e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|20091332|ref|NP_617407.1| - 1.7e-15 57.6 0.0 4e-15 56.5 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20091332|ref|NP_617407.1| - 2e-05 24.2 1.6 0.00086 18.9 0.7 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PPK2 PF03976.9 gi|20091333|ref|NP_617408.1| - 4.8e-68 228.8 3.4 8.9e-68 227.9 2.3 1.4 1 1 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) HSBP1 PF06825.7 gi|20091333|ref|NP_617408.1| - 0.36 10.4 3.0 1.4 8.5 0.9 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 MFS_1 PF07690.11 gi|20091334|ref|NP_617409.1| - 8e-36 123.4 59.5 8e-36 123.4 41.2 2.8 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|20091334|ref|NP_617409.1| - 6.6e-05 21.2 14.0 6.6e-05 21.2 9.7 2.8 2 1 1 3 3 3 2 Transmembrane secretion effector PetG PF02529.10 gi|20091334|ref|NP_617409.1| - 0.0012 18.2 0.7 0.0012 18.2 0.5 4.2 5 0 0 5 5 5 1 Cytochrome B6-F complex subunit 5 EamA PF00892.15 gi|20091335|ref|NP_617410.1| - 0.3 11.1 18.2 0.034 14.1 8.2 1.9 1 1 1 2 2 2 0 EamA-like transporter family DUF962 PF06127.6 gi|20091335|ref|NP_617410.1| - 7.8 6.4 7.4 64 3.5 5.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF962) DUF962 PF06127.6 gi|20091336|ref|NP_617411.1| - 0.59 10.0 4.2 0.39 10.6 1.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF962) DUF308 PF03729.8 gi|20091337|ref|NP_617412.1| - 2.2e-18 66.0 60.5 1.6e-10 40.8 16.6 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) NosD PF05048.8 gi|20091338|ref|NP_617413.1| - 9.4e-102 339.1 111.6 3.6e-47 160.4 26.7 4.6 1 1 2 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091338|ref|NP_617413.1| - 1.9e-51 173.9 104.1 4.8e-17 62.1 16.2 5.7 2 2 3 5 5 5 5 Right handed beta helix region Peptidase_C1 PF00112.18 gi|20091338|ref|NP_617413.1| - 6.5e-22 78.4 0.0 1.3e-21 77.4 0.0 1.4 1 0 0 1 1 1 1 Papain family cysteine protease PKD PF00801.15 gi|20091338|ref|NP_617413.1| - 3e-14 52.5 1.9 1.3e-13 50.4 1.3 2.2 1 0 0 1 1 1 1 PKD domain DUF367 PF04034.8 gi|20091339|ref|NP_617414.1| - 8.5e-46 154.7 0.0 1e-45 154.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|20091339|ref|NP_617414.1| - 7.1e-15 54.3 0.3 7.1e-15 54.3 0.2 1.8 2 0 0 2 2 2 1 Possible Fer4-like domain in RNase L inhibitor, RLI Lysine_decarbox PF03641.9 gi|20091340|ref|NP_617415.1| - 5.9e-08 32.6 1.2 8.6e-08 32.0 0.1 1.8 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|20091340|ref|NP_617415.1| - 3.2e-07 29.4 2.1 0.00034 19.5 1.4 2.1 1 1 0 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|20091340|ref|NP_617415.1| - 0.064 13.1 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Topoisom_bac PF01131.15 gi|20091341|ref|NP_617416.1| - 1.2e-112 376.7 0.0 1.7e-112 376.2 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|20091341|ref|NP_617416.1| - 6.9e-17 61.2 0.8 2e-16 59.7 0.1 2.2 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|20091341|ref|NP_617416.1| - 4.8e-14 51.5 5.8 5.2e-14 51.4 1.3 2.5 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|20091341|ref|NP_617416.1| - 1.1e-07 31.9 0.9 9.4e-07 28.9 0.6 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|20091341|ref|NP_617416.1| - 1.8e-05 24.5 0.1 5e-05 23.1 0.1 1.7 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.1 gi|20091341|ref|NP_617416.1| - 0.00029 20.8 0.0 0.00068 19.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) TfoX_C PF04994.8 gi|20091341|ref|NP_617416.1| - 0.0027 17.5 0.0 0.0077 16.1 0.0 1.8 1 0 0 1 1 1 1 TfoX C-terminal domain EF-hand_7 PF13499.1 gi|20091341|ref|NP_617416.1| - 0.0083 16.2 0.3 0.13 12.4 0.0 2.5 2 0 0 2 2 2 1 EF-hand domain pair DNA_pol_lambd_f PF10391.4 gi|20091341|ref|NP_617416.1| - 0.015 14.8 0.0 0.05 13.1 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF2283 PF10049.4 gi|20091341|ref|NP_617416.1| - 0.14 11.9 0.2 0.69 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) Usp PF00582.21 gi|20091342|ref|NP_617417.1| - 8.9e-35 119.9 0.1 1e-34 119.7 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Beta-Casp PF10996.3 gi|20091343|ref|NP_617418.1| - 3.5e-23 81.8 0.0 8.7e-23 80.6 0.0 1.7 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.7 gi|20091343|ref|NP_617418.1| - 2.7e-11 43.1 0.0 1e-10 41.2 0.0 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|20091343|ref|NP_617418.1| - 2.7e-11 43.3 0.0 6.1e-11 42.2 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20091343|ref|NP_617418.1| - 8.4e-10 38.6 0.0 2.9e-09 36.8 0.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|20091343|ref|NP_617418.1| - 0.00036 20.2 0.0 0.001 18.8 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain dDENN PF03455.14 gi|20091343|ref|NP_617418.1| - 0.098 12.7 0.1 34 4.6 0.0 2.9 3 0 0 3 3 3 0 dDENN domain DUF2148 PF09918.4 gi|20091344|ref|NP_617419.1| - 9.9e-37 124.4 0.9 9.9e-37 124.4 0.6 1.7 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|20091344|ref|NP_617419.1| - 7.5e-05 22.2 0.9 0.00021 20.8 0.6 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster zf-RING_4 PF14570.1 gi|20091344|ref|NP_617419.1| - 0.012 15.1 0.1 0.024 14.2 0.1 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Nitroreductase PF00881.19 gi|20091344|ref|NP_617419.1| - 0.09 12.5 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 Nitroreductase family DUF460 PF04312.8 gi|20091345|ref|NP_617420.1| - 5.8e-46 155.4 0.1 1.5e-45 154.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DUF713 PF05218.9 gi|20091345|ref|NP_617420.1| - 0.017 14.8 2.4 0.034 13.8 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF713) DUF2703 PF10865.3 gi|20091345|ref|NP_617420.1| - 0.11 12.4 0.4 0.26 11.2 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) V_ATPase_I PF01496.14 gi|20091345|ref|NP_617420.1| - 0.22 9.3 4.9 0.36 8.6 3.4 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Peptidase_M8 PF01457.11 gi|20091345|ref|NP_617420.1| - 0.27 9.5 0.1 0.68 8.2 0.0 1.6 1 1 0 2 2 2 0 Leishmanolysin NPV_P10 PF05531.7 gi|20091345|ref|NP_617420.1| - 0.35 11.1 2.0 14 6.0 1.4 2.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein SlyX PF04102.7 gi|20091345|ref|NP_617420.1| - 0.61 10.4 5.6 14 6.1 1.0 2.8 1 1 1 2 2 2 0 SlyX FlaC_arch PF05377.6 gi|20091345|ref|NP_617420.1| - 1.2 9.1 4.9 5.2 7.0 0.2 3.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) L31 PF09784.4 gi|20091345|ref|NP_617420.1| - 1.2 9.2 9.9 12 6.0 0.5 2.9 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L31 Spc24 PF08286.6 gi|20091345|ref|NP_617420.1| - 1.9 8.2 9.9 1.3 8.7 0.1 3.2 4 0 0 4 4 4 0 Spc24 subunit of Ndc80 Fib_alpha PF08702.5 gi|20091345|ref|NP_617420.1| - 3.2 7.8 10.7 2.9 7.9 5.9 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family RIO1 PF01163.17 gi|20091346|ref|NP_617421.1| - 1e-42 145.6 0.1 1.5e-42 145.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|20091346|ref|NP_617421.1| - 1.3e-29 102.1 0.1 3.3e-29 100.7 0.0 1.7 2 0 0 2 2 2 1 Rio2, N-terminal Pkinase PF00069.20 gi|20091346|ref|NP_617421.1| - 0.00016 20.8 0.0 0.00032 19.9 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|20091346|ref|NP_617421.1| - 0.00018 21.3 0.3 0.0022 17.7 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Tbf5 PF06331.7 gi|20091346|ref|NP_617421.1| - 0.043 13.6 1.8 0.15 11.8 0.1 2.7 3 0 0 3 3 3 0 Transcription factor TFIIH complex subunit Tfb5 LRR_5 PF13306.1 gi|20091347|ref|NP_617422.1| - 0.0021 17.7 0.2 0.0048 16.5 0.1 1.5 1 0 0 1 1 1 1 Leucine rich repeats (6 copies) PKD PF00801.15 gi|20091347|ref|NP_617422.1| - 0.017 14.8 0.1 0.048 13.4 0.1 1.7 1 0 0 1 1 1 0 PKD domain LRR_6 PF13516.1 gi|20091347|ref|NP_617422.1| - 0.15 12.2 10.0 3.3 8.0 0.6 5.3 3 2 0 3 3 3 0 Leucine Rich repeat LRR_7 PF13504.1 gi|20091347|ref|NP_617422.1| - 0.24 11.7 5.6 21 5.8 0.2 4.9 4 0 0 4 4 4 0 Leucine rich repeat LRR_4 PF12799.2 gi|20091347|ref|NP_617422.1| - 0.59 9.8 12.4 4.2 7.0 0.4 4.8 3 2 0 3 3 3 0 Leucine Rich repeats (2 copies) Pribosyltran PF00156.22 gi|20091348|ref|NP_617423.1| - 6.4e-22 77.5 0.5 1.1e-21 76.8 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|20091348|ref|NP_617423.1| - 4.9e-06 25.9 0.6 7.1e-06 25.3 0.1 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|20091348|ref|NP_617423.1| - 4e-05 23.0 1.3 0.00033 19.9 0.9 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.10 gi|20091348|ref|NP_617423.1| - 0.00062 19.5 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|20091348|ref|NP_617423.1| - 0.0038 16.5 0.0 0.0081 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family PRTase_3 PF15610.1 gi|20091348|ref|NP_617423.1| - 0.005 15.7 0.2 0.023 13.5 0.1 1.9 2 0 0 2 2 2 1 PRTase ComF-like Terminase_5 PF06056.7 gi|20091348|ref|NP_617423.1| - 0.01 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) OmpA_membrane PF01389.12 gi|20091348|ref|NP_617423.1| - 0.013 15.0 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 OmpA-like transmembrane domain HTH_23 PF13384.1 gi|20091348|ref|NP_617423.1| - 0.014 15.0 0.0 0.033 13.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PAX PF00292.13 gi|20091348|ref|NP_617423.1| - 0.026 14.2 0.1 5 6.8 0.0 2.5 2 1 0 2 2 2 0 'Paired box' domain HTH_11 PF08279.7 gi|20091348|ref|NP_617423.1| - 0.026 14.1 0.2 0.079 12.6 0.1 1.9 1 1 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|20091348|ref|NP_617423.1| - 0.073 12.5 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|20091348|ref|NP_617423.1| - 0.089 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2481 PF10654.4 gi|20091348|ref|NP_617423.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) DUF457 PF04307.9 gi|20091349|ref|NP_617424.1| - 3.2e-17 62.3 6.0 3.6e-17 62.1 4.1 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|20091349|ref|NP_617424.1| - 0.0019 17.8 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF485 PF04341.7 gi|20091349|ref|NP_617424.1| - 1.2 8.9 3.5 6.2 6.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF485 DUF912 PF06024.7 gi|20091350|ref|NP_617425.1| - 0.12 12.4 5.1 0.053 13.5 1.4 1.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) SIR2_2 PF13289.1 gi|20091351|ref|NP_617426.1| - 6.6e-23 81.1 0.0 1.2e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 SIR2-like domain CHAT PF12770.2 gi|20091351|ref|NP_617426.1| - 1.9e-09 37.1 0.0 3.5e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 CHAT domain SIR2_2 PF13289.1 gi|20091352|ref|NP_617427.1| - 0.0029 17.4 0.0 0.0054 16.6 0.0 1.5 1 1 0 1 1 1 1 SIR2-like domain WD40 PF00400.27 gi|20091353|ref|NP_617428.1| - 1.4e-158 509.7 36.0 9.2e-10 38.0 0.1 16.3 16 0 0 16 16 16 16 WD domain, G-beta repeat eIF2A PF08662.6 gi|20091353|ref|NP_617428.1| - 1.8e-44 151.7 22.2 4.8e-10 39.4 0.7 8.3 1 1 6 7 7 7 7 Eukaryotic translation initiation factor eIF2A PD40 PF07676.7 gi|20091353|ref|NP_617428.1| - 4e-23 80.6 25.8 1.1 9.0 0.0 15.7 16 0 0 16 16 16 3 WD40-like Beta Propeller Repeat Proteasome_A_N PF10584.4 gi|20091353|ref|NP_617428.1| - 8.8e-23 79.2 6.7 12 5.3 0.0 15.2 16 0 0 16 16 16 0 Proteasome subunit A N-terminal signature Coatomer_WDAD PF04053.9 gi|20091353|ref|NP_617428.1| - 9.7e-20 70.7 10.7 0.00064 18.6 0.2 7.3 1 1 5 6 6 6 5 Coatomer WD associated region Nup160 PF11715.3 gi|20091353|ref|NP_617428.1| - 1.8e-19 69.3 27.2 0.077 11.1 0.0 13.1 2 2 8 11 11 11 8 Nucleoporin Nup120/160 PQQ_2 PF13360.1 gi|20091353|ref|NP_617428.1| - 1.3e-15 57.5 30.8 6.5e-06 25.7 4.7 6.0 2 2 0 4 4 4 3 PQQ-like domain Cytochrom_D1 PF02239.11 gi|20091353|ref|NP_617428.1| - 2.4e-14 52.4 7.4 0.49 8.6 0.0 8.0 1 1 7 9 9 9 8 Cytochrome D1 heme domain AAA_16 PF13191.1 gi|20091353|ref|NP_617428.1| - 5.5e-06 26.4 0.1 5.5e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF2233 PF09992.4 gi|20091353|ref|NP_617428.1| - 0.0016 18.4 13.7 2.5 8.0 0.4 6.7 2 2 3 5 5 5 1 Predicted periplasmic protein (DUF2233) Mid2 PF04478.7 gi|20091353|ref|NP_617428.1| - 0.002 17.5 31.1 17 4.8 0.0 11.8 3 2 11 14 14 14 0 Mid2 like cell wall stress sensor DUF258 PF03193.11 gi|20091353|ref|NP_617428.1| - 0.071 12.2 0.0 0.2 10.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3675 PF12428.3 gi|20091353|ref|NP_617428.1| - 0.097 12.9 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3675) DUF2309 PF10070.4 gi|20091353|ref|NP_617428.1| - 0.32 9.0 5.6 0.49 8.4 3.9 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) Ser_hydrolase PF06821.8 gi|20091353|ref|NP_617428.1| - 0.68 9.5 7.2 55 3.3 0.1 5.6 5 2 2 7 7 7 0 Serine hydrolase AAA_23 PF13476.1 gi|20091353|ref|NP_617428.1| - 0.91 9.8 12.4 0.56 10.4 0.1 2.5 2 1 0 2 2 2 0 AAA domain Crystall PF00030.14 gi|20091354|ref|NP_617429.1| - 5.1e-20 71.1 0.1 6.5e-20 70.8 0.1 1.1 1 0 0 1 1 1 1 Beta/Gamma crystallin Crystall_3 PF08964.5 gi|20091354|ref|NP_617429.1| - 3.5e-06 26.6 1.5 2.1e-05 24.1 0.2 2.1 1 1 1 2 2 2 1 Beta/Gamma crystallin Inhibitor_I36 PF03995.8 gi|20091354|ref|NP_617429.1| - 0.093 13.1 0.2 0.12 12.8 0.1 1.2 1 0 0 1 1 1 0 Peptidase inhibitor family I36 CD20 PF04103.10 gi|20091355|ref|NP_617430.1| - 0.085 12.7 0.0 0.086 12.7 0.0 1.1 1 0 0 1 1 1 0 CD20-like family CotH PF08757.6 gi|20091356|ref|NP_617431.1| - 3.4e-34 118.5 2.8 4.7e-34 118.0 2.0 1.1 1 0 0 1 1 1 1 CotH protein Peptidase_M4_C PF02868.10 gi|20091357|ref|NP_617432.1| - 5.3e-47 159.6 0.1 8.1e-47 159.0 0.0 1.3 1 0 0 1 1 1 1 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4 PF01447.13 gi|20091357|ref|NP_617432.1| - 5.2e-26 91.5 0.2 9e-26 90.7 0.1 1.4 1 0 0 1 1 1 1 Thermolysin metallopeptidase, catalytic domain Peptidase_M13 PF01431.16 gi|20091357|ref|NP_617432.1| - 0.011 14.8 0.2 0.025 13.7 0.2 1.5 1 0 0 1 1 1 0 Peptidase family M13 DUF1133 PF06576.6 gi|20091357|ref|NP_617432.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1133) DJ-1_PfpI PF01965.19 gi|20091359|ref|NP_617434.1| - 1.1e-41 141.6 0.0 1.4e-41 141.3 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|20091359|ref|NP_617434.1| - 2e-16 59.7 0.0 2.6e-16 59.3 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|20091359|ref|NP_617434.1| - 3.7e-05 23.2 0.0 4.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|20091359|ref|NP_617434.1| - 0.041 13.4 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|20091359|ref|NP_617434.1| - 0.078 11.8 0.0 0.13 11.1 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|20091359|ref|NP_617434.1| - 0.12 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Cys_Met_Meta_PP PF01053.15 gi|20091360|ref|NP_617435.1| - 4.7e-152 505.7 0.0 5.3e-152 505.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.6 gi|20091360|ref|NP_617435.1| - 4.6e-10 38.3 0.1 2e-09 36.2 0.1 1.8 1 1 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.16 gi|20091360|ref|NP_617435.1| - 1.5e-08 33.9 0.0 2.2e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|20091360|ref|NP_617435.1| - 2e-06 26.8 0.0 2.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|20091360|ref|NP_617435.1| - 0.00028 20.1 0.1 0.0015 17.7 0.1 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|20091360|ref|NP_617435.1| - 0.00036 19.6 0.1 0.0008 18.5 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.11 gi|20091360|ref|NP_617435.1| - 0.0021 16.8 0.0 0.0027 16.4 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein NAPRTase PF04095.11 gi|20091361|ref|NP_617436.1| - 4.1e-56 190.0 0.0 5.6e-56 189.5 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family DUF1905 PF08922.6 gi|20091362|ref|NP_617437.1| - 1.7 8.2 5.2 0.61 9.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) PD40 PF07676.7 gi|20091363|ref|NP_617438.1| - 2.8e-24 84.3 14.8 1.3e-12 47.1 0.3 5.3 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|20091363|ref|NP_617438.1| - 5.9e-05 21.8 2.0 0.015 13.9 0.4 3.5 1 1 1 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|20091363|ref|NP_617438.1| - 0.002 16.6 0.1 0.59 8.5 0.0 3.5 1 1 2 4 4 4 1 Oligogalacturonate lyase DUF3592 PF12158.3 gi|20091363|ref|NP_617438.1| - 0.049 13.4 0.5 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3592) Hexapep PF00132.19 gi|20091364|ref|NP_617439.1| - 9e-13 47.1 4.1 0.00079 18.8 0.0 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20091364|ref|NP_617439.1| - 7.1e-08 31.8 2.3 0.00019 20.9 0.1 4.5 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase Methyltransf_31 PF13847.1 gi|20091365|ref|NP_617440.1| - 1e-20 73.8 0.1 1.3e-20 73.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091365|ref|NP_617440.1| - 4.7e-20 71.8 0.0 6.6e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091365|ref|NP_617440.1| - 1.8e-16 60.7 0.1 2.6e-16 60.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091365|ref|NP_617440.1| - 2.8e-14 53.1 0.0 4e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091365|ref|NP_617440.1| - 6.5e-13 48.9 0.0 1.6e-12 47.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091365|ref|NP_617440.1| - 1.2e-12 47.4 0.0 1.4e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|20091365|ref|NP_617440.1| - 1.3e-12 48.0 0.1 1.8e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20091365|ref|NP_617440.1| - 1.6e-11 43.8 0.0 2.3e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20091365|ref|NP_617440.1| - 2e-10 40.7 0.0 4.3e-10 39.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20091365|ref|NP_617440.1| - 1e-08 34.6 0.1 1.4e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|20091365|ref|NP_617440.1| - 2.7e-06 26.7 0.0 3.5e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|20091365|ref|NP_617440.1| - 2.3e-05 23.8 0.0 3.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|20091365|ref|NP_617440.1| - 2.5e-05 24.0 0.0 0.00045 19.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|20091365|ref|NP_617440.1| - 4.8e-05 22.5 0.0 6.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|20091365|ref|NP_617440.1| - 0.00022 20.8 0.0 0.00033 20.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|20091365|ref|NP_617440.1| - 0.00092 18.7 0.1 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|20091365|ref|NP_617440.1| - 0.00096 18.8 0.0 0.0022 17.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.6 gi|20091365|ref|NP_617440.1| - 0.0012 18.2 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.13 gi|20091365|ref|NP_617440.1| - 0.0012 18.1 0.1 0.013 14.7 0.1 2.1 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_4 PF02390.12 gi|20091365|ref|NP_617440.1| - 0.0012 17.8 0.0 0.0049 15.9 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_20 PF12147.3 gi|20091365|ref|NP_617440.1| - 0.0015 17.4 0.0 0.0022 16.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase DREV PF05219.7 gi|20091365|ref|NP_617440.1| - 0.0028 16.5 0.0 0.0043 15.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase N2227 PF07942.7 gi|20091365|ref|NP_617440.1| - 0.033 13.1 0.0 0.057 12.3 0.0 1.4 1 0 0 1 1 1 0 N2227-like protein FmrO PF07091.6 gi|20091365|ref|NP_617440.1| - 0.035 13.0 0.0 0.048 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|20091365|ref|NP_617440.1| - 0.041 12.5 0.1 0.073 11.7 0.0 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) DOT1 PF08123.8 gi|20091365|ref|NP_617440.1| - 0.06 12.6 0.3 0.15 11.3 0.0 1.8 3 0 0 3 3 3 0 Histone methylation protein DOT1 Met_10 PF02475.11 gi|20091365|ref|NP_617440.1| - 0.069 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Met-10+ like-protein TPMT PF05724.6 gi|20091365|ref|NP_617440.1| - 0.081 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) MULE PF10551.4 gi|20091366|ref|NP_617441.1| - 9.6e-13 48.1 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091366|ref|NP_617441.1| - 0.021 13.3 0.0 0.035 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091366|ref|NP_617441.1| - 0.028 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20091366|ref|NP_617441.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091366|ref|NP_617441.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20091366|ref|NP_617441.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20091366|ref|NP_617441.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091366|ref|NP_617441.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger HEAT_2 PF13646.1 gi|20091367|ref|NP_617442.1| - 1.4e-144 470.7 62.2 8.7e-18 64.4 2.0 6.8 1 1 10 11 11 11 11 HEAT repeats HEAT_PBS PF03130.11 gi|20091367|ref|NP_617442.1| - 5.6e-48 156.5 27.0 5.7e-05 23.2 0.1 13.9 14 0 0 14 14 14 11 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|20091367|ref|NP_617442.1| - 4.7e-38 125.8 5.9 0.00034 20.4 0.0 12.4 13 0 0 13 13 13 8 HEAT repeat HEAT_EZ PF13513.1 gi|20091367|ref|NP_617442.1| - 2.2e-37 126.6 29.2 3.6e-05 24.1 0.1 12.1 7 3 6 13 13 13 9 HEAT-like repeat Arm PF00514.18 gi|20091367|ref|NP_617442.1| - 1.4e-13 50.0 9.5 0.2 11.5 0.1 9.8 9 1 1 10 10 10 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|20091367|ref|NP_617442.1| - 5.3e-11 41.5 0.7 0.014 13.7 0.0 5.0 2 1 1 4 4 4 3 Adaptin N terminal region Cnd1 PF12717.2 gi|20091367|ref|NP_617442.1| - 9.1e-08 32.1 0.5 2.3 8.0 0.0 7.7 4 3 5 9 9 9 1 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.2 gi|20091367|ref|NP_617442.1| - 4e-06 26.6 8.7 2.9 7.9 0.0 7.3 7 1 0 7 7 7 1 HEAT repeat associated with sister chromatid cohesion PPR_3 PF13812.1 gi|20091367|ref|NP_617442.1| - 1.3e-05 25.0 0.0 40 4.8 0.0 7.0 10 1 0 10 10 6 0 Pentatricopeptide repeat domain CLASP_N PF12348.3 gi|20091367|ref|NP_617442.1| - 7.8e-05 22.1 0.5 11 5.3 0.0 5.1 4 2 0 5 5 5 0 CLASP N terminal Clathrin PF00637.15 gi|20091367|ref|NP_617442.1| - 0.00029 20.4 0.0 0.76 9.3 0.0 3.9 3 1 1 4 4 4 1 Region in Clathrin and VPS VWA_CoxE PF05762.9 gi|20091367|ref|NP_617442.1| - 0.00059 19.0 0.8 0.00059 19.0 0.5 1.7 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein RasGEF_N_2 PF14663.1 gi|20091367|ref|NP_617442.1| - 0.0015 18.4 3.8 92 3.0 0.0 6.2 3 2 3 7 7 7 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain ALF PF03752.8 gi|20091367|ref|NP_617442.1| - 0.0021 17.9 24.9 0.38 10.6 0.2 7.8 7 1 1 8 8 8 2 Short repeats of unknown function RICTOR_V PF14668.1 gi|20091367|ref|NP_617442.1| - 0.0054 16.6 0.0 30 4.6 0.0 4.3 4 0 0 4 4 4 0 Rapamycin-insensitive companion of mTOR, domain 5 Aconitase_B_N PF11791.3 gi|20091367|ref|NP_617442.1| - 0.0066 16.2 6.7 1.2 8.8 0.0 5.5 3 3 3 6 6 6 1 Aconitate B N-terminal domain BAR_2 PF10455.4 gi|20091367|ref|NP_617442.1| - 0.0091 14.9 0.0 2.5 6.9 0.0 3.7 3 2 1 4 4 4 1 Bin/amphiphysin/Rvs domain for vesicular trafficking Urease_alpha PF00449.15 gi|20091367|ref|NP_617442.1| - 0.035 14.2 1.2 15 5.7 0.0 4.3 3 1 2 5 5 5 0 Urease alpha-subunit, N-terminal domain DUF2435 PF10363.4 gi|20091367|ref|NP_617442.1| - 0.095 12.6 2.0 13 5.7 0.1 4.6 4 3 1 5 5 4 0 Protein of unknown function (DUF2435) HTH_8 PF02954.14 gi|20091367|ref|NP_617442.1| - 0.1 12.1 5.4 6.3 6.4 0.1 4.7 4 0 0 4 4 4 0 Bacterial regulatory protein, Fis family Drf_GBD PF06371.8 gi|20091367|ref|NP_617442.1| - 0.15 11.4 0.0 3 7.1 0.0 2.9 3 0 0 3 3 3 0 Diaphanous GTPase-binding Domain FUSC PF04632.7 gi|20091367|ref|NP_617442.1| - 8.1 4.7 7.0 7.1 4.9 1.9 2.0 2 0 0 2 2 2 0 Fusaric acid resistance protein family Beta_helix PF13229.1 gi|20091368|ref|NP_617443.1| - 5.2e-08 32.7 13.1 5.2e-08 32.7 9.1 3.1 2 2 1 3 3 3 2 Right handed beta helix region Apolipoprotein PF01442.13 gi|20091369|ref|NP_617444.1| - 0.0041 16.6 2.3 0.0044 16.5 1.6 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF3482 PF11981.3 gi|20091369|ref|NP_617444.1| - 0.053 12.7 0.6 0.078 12.1 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Mating_N PF12731.2 gi|20091369|ref|NP_617444.1| - 0.21 11.4 5.3 0.062 13.1 1.1 2.1 2 1 1 3 3 3 0 Mating-type protein beta 1 COG5 PF10392.4 gi|20091369|ref|NP_617444.1| - 0.3 11.0 2.7 2.1 8.2 2.0 1.9 1 1 1 2 2 2 0 Golgi transport complex subunit 5 SPX PF03105.14 gi|20091369|ref|NP_617444.1| - 0.45 10.2 4.3 0.59 9.8 3.0 1.2 1 0 0 1 1 1 0 SPX domain Secretin_N_2 PF07655.8 gi|20091369|ref|NP_617444.1| - 3.9 7.9 8.5 5.4 7.4 4.8 2.1 1 1 1 2 2 2 0 Secretin N-terminal domain DUF4611 PF15387.1 gi|20091369|ref|NP_617444.1| - 5 7.3 8.6 14 5.9 0.5 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4611) Metal_resist PF13801.1 gi|20091370|ref|NP_617445.1| - 0.0013 18.7 1.5 0.27 11.2 0.1 2.9 3 1 1 4 4 3 1 Heavy-metal resistance Cytochrom_B562 PF07361.6 gi|20091370|ref|NP_617445.1| - 0.018 15.4 9.5 1.7 9.1 1.4 3.2 2 1 2 4 4 4 0 Cytochrome b562 Uds1 PF15456.1 gi|20091370|ref|NP_617445.1| - 0.13 12.2 8.6 0.49 10.4 0.5 3.3 2 1 1 3 3 3 0 Up-regulated During Septation DUF1664 PF07889.7 gi|20091370|ref|NP_617445.1| - 0.18 11.6 11.2 0.19 11.5 2.3 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF3510 PF12022.3 gi|20091370|ref|NP_617445.1| - 0.2 11.7 2.1 1.1 9.3 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3510) MerR-DNA-bind PF09278.6 gi|20091370|ref|NP_617445.1| - 0.3 11.5 14.0 6.7 7.1 1.5 4.9 4 1 1 5 5 5 0 MerR, DNA binding DUF948 PF06103.6 gi|20091370|ref|NP_617445.1| - 0.51 10.2 12.8 2 8.3 0.9 3.3 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF883 PF05957.8 gi|20091370|ref|NP_617445.1| - 0.53 10.7 5.6 16 5.9 0.1 3.4 2 1 0 3 3 3 0 Bacterial protein of unknown function (DUF883) OmpH PF03938.9 gi|20091370|ref|NP_617445.1| - 0.82 9.5 16.5 6.3 6.7 10.8 2.5 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Syntaxin_2 PF14523.1 gi|20091370|ref|NP_617445.1| - 0.86 9.6 8.5 3.6 7.6 0.2 3.1 2 1 1 3 3 3 0 Syntaxin-like protein DUF1877 PF08974.5 gi|20091370|ref|NP_617445.1| - 0.97 9.0 7.3 0.7 9.5 0.6 3.0 2 1 0 3 3 3 0 Domain of unknown function (DUF1877) FlxA PF14282.1 gi|20091370|ref|NP_617445.1| - 0.97 9.4 19.9 2.1 8.3 0.6 3.5 2 1 1 3 3 3 0 FlxA-like protein DNA_topoisoIV PF00521.15 gi|20091370|ref|NP_617445.1| - 0.98 8.1 6.3 13 4.5 0.0 2.1 2 0 0 2 2 2 0 DNA gyrase/topoisomerase IV, subunit A G-alpha PF00503.15 gi|20091370|ref|NP_617445.1| - 1 7.9 5.9 0.28 9.8 1.5 1.8 2 0 0 2 2 2 0 G-protein alpha subunit NPV_P10 PF05531.7 gi|20091370|ref|NP_617445.1| - 1.1 9.5 19.5 21 5.4 0.2 4.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Fzo_mitofusin PF04799.8 gi|20091370|ref|NP_617445.1| - 1.4 8.2 12.8 0.09 12.1 0.5 2.7 3 0 0 3 3 3 0 fzo-like conserved region tRNA-synt_His PF13393.1 gi|20091370|ref|NP_617445.1| - 1.8 7.5 7.7 0.56 9.1 1.1 2.2 1 1 1 2 2 2 0 Histidyl-tRNA synthetase CAMP_factor PF07373.6 gi|20091370|ref|NP_617445.1| - 1.9 7.9 11.2 6.4 6.2 0.9 3.3 2 1 1 3 3 3 0 CAMP factor (Cfa) WXG100 PF06013.7 gi|20091370|ref|NP_617445.1| - 2.1 8.4 10.4 1.7 8.7 0.7 3.7 3 1 1 4 4 4 0 Proteins of 100 residues with WXG Med10 PF09748.4 gi|20091370|ref|NP_617445.1| - 2.5 7.9 8.2 84 3.0 3.1 3.6 2 1 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Baculo_PEP_C PF04513.7 gi|20091370|ref|NP_617445.1| - 2.6 7.8 17.0 8.8 6.1 3.6 3.2 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus H-kinase_dim PF02895.9 gi|20091370|ref|NP_617445.1| - 2.7 8.3 12.4 54 4.2 6.8 3.2 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain Fib_alpha PF08702.5 gi|20091370|ref|NP_617445.1| - 3.3 7.8 13.3 2.7 8.1 6.1 2.6 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.14 gi|20091370|ref|NP_617445.1| - 4.2 5.1 12.9 0.28 8.9 4.7 1.7 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Osmo_CC PF08946.5 gi|20091370|ref|NP_617445.1| - 7.1 6.7 19.1 0.61 10.1 0.2 4.7 3 2 2 5 5 5 0 Osmosensory transporter coiled coil DUF1826 PF08856.6 gi|20091370|ref|NP_617445.1| - 7.5 6.2 6.3 1.5 8.5 0.5 2.2 2 1 1 3 3 2 0 Protein of unknown function (DUF1826) SlyX PF04102.7 gi|20091370|ref|NP_617445.1| - 7.6 6.9 20.3 11 6.5 3.9 4.6 2 1 3 5 5 5 0 SlyX DREPP PF05558.7 gi|20091370|ref|NP_617445.1| - 7.7 6.2 7.9 2.1 8.1 0.3 2.3 2 0 0 2 2 2 0 DREPP plasma membrane polypeptide CR6_interact PF10147.4 gi|20091370|ref|NP_617445.1| - 7.9 5.7 11.3 0.37 10.0 1.9 2.3 2 1 1 3 3 3 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Pedibin PF08182.6 gi|20091370|ref|NP_617445.1| - 9.1 5.8 11.6 4.7 6.7 0.5 3.2 3 0 0 3 3 2 0 Pedibin/Hym-346 family HTH_20 PF12840.2 gi|20091371|ref|NP_617446.1| - 2.8e-14 52.6 0.4 4e-14 52.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20091371|ref|NP_617446.1| - 1.6e-06 27.3 1.2 8.4e-06 25.0 0.9 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20091371|ref|NP_617446.1| - 1e-05 25.1 0.4 2e-05 24.2 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|20091371|ref|NP_617446.1| - 3.5e-05 23.3 0.3 6.1e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|20091371|ref|NP_617446.1| - 4.2e-05 23.1 3.6 5e-05 22.8 0.1 2.5 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|20091371|ref|NP_617446.1| - 0.00081 18.8 0.7 0.0012 18.3 0.5 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit DUF742 PF05331.6 gi|20091371|ref|NP_617446.1| - 0.0014 18.1 0.0 0.0025 17.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF742) MarR PF01047.17 gi|20091371|ref|NP_617446.1| - 0.0021 17.7 0.2 0.0046 16.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20091371|ref|NP_617446.1| - 0.0032 17.7 0.2 0.0057 16.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|20091371|ref|NP_617446.1| - 0.017 15.0 0.2 0.026 14.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_30 PF13556.1 gi|20091371|ref|NP_617446.1| - 0.071 12.7 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Rrf2 PF02082.15 gi|20091371|ref|NP_617446.1| - 0.11 12.6 0.1 0.27 11.3 0.1 1.8 1 1 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|20091371|ref|NP_617446.1| - 0.3 10.7 2.6 0.24 11.0 0.4 1.9 2 0 0 2 2 2 0 HTH domain CarboxypepD_reg PF13620.1 gi|20091373|ref|NP_617448.1| - 9.5e-06 25.5 0.3 5.1e-05 23.2 0.1 2.2 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|20091373|ref|NP_617448.1| - 0.00015 21.7 0.2 0.00056 19.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) MarR_2 PF12802.2 gi|20091373|ref|NP_617448.1| - 0.001 18.6 0.1 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20091373|ref|NP_617448.1| - 0.0018 17.9 0.1 0.0034 17.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20091373|ref|NP_617448.1| - 0.0051 16.1 0.5 0.0088 15.4 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|20091373|ref|NP_617448.1| - 0.12 12.1 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF4405 PF14358.1 gi|20091374|ref|NP_617449.1| - 6.6e-14 51.8 10.5 8.3e-14 51.4 7.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ferric_reduct PF01794.14 gi|20091374|ref|NP_617449.1| - 0.0031 17.6 1.0 0.0034 17.4 0.7 1.1 1 0 0 1 1 1 1 Ferric reductase like transmembrane component Ni_hydr_CYTB PF01292.15 gi|20091374|ref|NP_617449.1| - 0.008 15.5 3.9 0.0093 15.3 2.7 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|20091374|ref|NP_617449.1| - 0.0088 15.4 5.2 0.01 15.1 3.6 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB ABC_tran PF00005.22 gi|20091375|ref|NP_617450.1| - 1.1e-31 109.9 0.0 2e-31 109.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091375|ref|NP_617450.1| - 3.9e-12 46.7 4.9 6.1e-11 42.8 1.6 2.7 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20091375|ref|NP_617450.1| - 2.2e-07 30.3 0.0 8.6e-07 28.4 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20091375|ref|NP_617450.1| - 0.00033 19.8 0.2 0.01 14.9 0.0 2.4 1 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|20091375|ref|NP_617450.1| - 0.00035 21.3 0.3 0.002 18.9 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20091375|ref|NP_617450.1| - 0.00052 19.5 0.0 0.00086 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|20091375|ref|NP_617450.1| - 0.00058 19.3 0.0 0.0014 18.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|20091375|ref|NP_617450.1| - 0.00058 20.1 0.0 0.23 11.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20091375|ref|NP_617450.1| - 0.0012 18.0 0.0 0.0022 17.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|20091375|ref|NP_617450.1| - 0.0018 18.2 0.9 0.0058 16.6 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|20091375|ref|NP_617450.1| - 0.0024 17.7 0.0 0.0091 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|20091375|ref|NP_617450.1| - 0.0035 15.8 0.6 0.32 9.4 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|20091375|ref|NP_617450.1| - 0.0062 16.6 0.0 0.033 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|20091375|ref|NP_617450.1| - 0.01 15.5 0.3 0.041 13.5 0.0 2.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|20091375|ref|NP_617450.1| - 0.011 15.1 0.0 0.041 13.2 0.0 2.0 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|20091375|ref|NP_617450.1| - 0.011 15.6 0.2 0.04 13.8 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20091375|ref|NP_617450.1| - 0.032 14.1 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|20091375|ref|NP_617450.1| - 0.068 12.3 0.1 14 4.8 0.0 3.2 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.17 gi|20091375|ref|NP_617450.1| - 0.069 13.3 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|20091375|ref|NP_617450.1| - 0.14 12.4 0.0 0.14 12.4 0.0 2.3 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|20091375|ref|NP_617450.1| - 0.17 11.6 0.0 0.48 10.2 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain NPCBM_assoc PF10633.4 gi|20091376|ref|NP_617451.1| - 1.1e-14 54.1 3.4 1.7e-06 27.9 0.0 4.5 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|20091376|ref|NP_617451.1| - 1.3e-09 38.0 16.6 0.013 15.4 0.2 3.9 2 1 1 3 3 3 3 CARDB DUF11 PF01345.13 gi|20091376|ref|NP_617451.1| - 1.3e-09 37.9 9.1 0.00012 21.9 1.1 3.9 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|20091376|ref|NP_617451.1| - 0.0046 16.5 1.6 0.054 13.0 0.0 3.2 3 1 1 4 4 4 1 Protein of unknown function (DUF2393) A2M PF00207.17 gi|20091376|ref|NP_617451.1| - 0.018 14.5 0.2 0.71 9.4 0.0 3.5 3 1 1 4 4 4 0 Alpha-2-macroglobulin family A2M_N PF01835.14 gi|20091376|ref|NP_617451.1| - 0.077 13.2 4.8 0.21 11.8 0.1 3.5 4 1 1 5 5 5 0 MG2 domain EMP24_GP25L PF01105.19 gi|20091376|ref|NP_617451.1| - 0.12 12.1 3.8 0.3 10.7 0.3 2.6 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD MacB_PCD PF12704.2 gi|20091377|ref|NP_617452.1| - 3.9e-46 157.5 2.9 3.9e-46 157.5 2.0 2.7 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|20091377|ref|NP_617452.1| - 2.2e-23 82.3 14.3 7.9e-23 80.5 6.5 2.3 2 0 0 2 2 2 2 FtsX-like permease family DUF4134 PF13572.1 gi|20091377|ref|NP_617452.1| - 0.017 15.2 1.1 0.017 15.2 0.8 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4134) Yip1 PF04893.12 gi|20091377|ref|NP_617452.1| - 0.091 12.2 13.8 0.4 10.1 7.5 2.3 2 0 0 2 2 2 0 Yip1 domain DUF1724 PF08350.5 gi|20091378|ref|NP_617453.1| - 4.2e-19 67.8 0.1 1.4e-18 66.1 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|20091378|ref|NP_617453.1| - 1.3e-09 37.6 0.0 1.1e-08 34.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|20091378|ref|NP_617453.1| - 4.8e-07 29.3 0.1 1.4e-06 27.8 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|20091378|ref|NP_617453.1| - 0.00011 21.5 1.7 0.00015 21.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20091378|ref|NP_617453.1| - 0.00043 19.8 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20091378|ref|NP_617453.1| - 0.0076 15.9 0.0 0.027 14.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|20091378|ref|NP_617453.1| - 0.012 15.0 0.6 0.033 13.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2513 PF10711.4 gi|20091378|ref|NP_617453.1| - 0.05 13.6 0.1 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2089 PF09862.4 gi|20091378|ref|NP_617453.1| - 0.07 12.9 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_27 PF13463.1 gi|20091378|ref|NP_617453.1| - 0.1 12.8 0.0 0.34 11.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|20091378|ref|NP_617453.1| - 0.13 12.3 0.1 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Transglut_core PF01841.14 gi|20091379|ref|NP_617454.1| - 0.00086 19.4 0.0 0.0024 18.0 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like superfamily CHASE4 PF05228.8 gi|20091380|ref|NP_617455.1| - 3.3e-45 153.5 0.1 2.3e-44 150.8 0.1 2.2 2 0 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.21 gi|20091380|ref|NP_617455.1| - 3.7e-30 103.8 0.0 7.7e-30 102.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20091380|ref|NP_617455.1| - 8.2e-19 67.3 0.1 3.7e-18 65.2 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20091380|ref|NP_617455.1| - 6e-05 23.0 0.1 0.0011 19.0 0.0 2.3 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|20091380|ref|NP_617455.1| - 0.00015 21.4 0.0 0.00033 20.3 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|20091380|ref|NP_617455.1| - 0.02 14.5 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|20091380|ref|NP_617455.1| - 0.038 14.1 0.0 0.038 14.1 0.0 2.0 2 0 0 2 2 2 0 HAMP domain CxxCxxCC PF03692.10 gi|20091381|ref|NP_617456.1| - 9.7e-06 25.9 2.2 2.2e-05 24.8 0.4 2.3 2 1 1 3 3 3 1 Putative zinc- or iron-chelating domain Kri1_C PF12936.2 gi|20091381|ref|NP_617456.1| - 0.043 13.7 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 KRI1-like family C-terminal TcdA_TcdB PF12919.2 gi|20091381|ref|NP_617456.1| - 0.12 10.8 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain CHASE4 PF05228.8 gi|20091382|ref|NP_617457.1| - 2.7e-47 160.3 0.0 7.3e-46 155.6 0.1 2.8 2 1 1 3 3 3 1 CHASE4 domain HATPase_c PF02518.21 gi|20091382|ref|NP_617457.1| - 2.4e-31 107.7 0.0 4.9e-31 106.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20091382|ref|NP_617457.1| - 8.5e-21 73.7 0.4 7e-20 70.7 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20091382|ref|NP_617457.1| - 1.7e-15 56.9 0.0 3.2e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|20091382|ref|NP_617457.1| - 2.8e-09 37.2 0.0 1.3e-08 35.1 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|20091382|ref|NP_617457.1| - 3.1e-05 23.6 1.9 3.6e-05 23.4 0.0 2.2 2 1 1 3 3 3 1 GHKL domain HAMP PF00672.20 gi|20091382|ref|NP_617457.1| - 0.0047 17.0 0.8 0.0082 16.3 0.0 1.8 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.1 gi|20091382|ref|NP_617457.1| - 0.0053 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|20091382|ref|NP_617457.1| - 0.0053 16.4 0.1 0.015 14.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|20091382|ref|NP_617457.1| - 0.017 15.3 0.0 0.074 13.3 0.0 2.2 1 1 0 1 1 1 0 PAS domain CLTH PF10607.4 gi|20091382|ref|NP_617457.1| - 0.071 12.8 1.7 0.44 10.2 0.1 2.7 2 1 0 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain Ly49 PF08391.5 gi|20091382|ref|NP_617457.1| - 0.61 10.2 3.2 30 4.7 0.1 3.1 3 0 0 3 3 3 0 Ly49-like protein, N-terminal region DUF1638 PF07796.6 gi|20091383|ref|NP_617458.1| - 7.5e-45 152.5 0.0 1e-44 152.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Pyridox_oxidase PF01243.15 gi|20091385|ref|NP_617460.1| - 1.4e-18 66.6 0.0 1.7e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|20091385|ref|NP_617460.1| - 0.07 13.4 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase dCMP_cyt_deam_1 PF00383.17 gi|20091386|ref|NP_617461.1| - 1.5e-10 40.6 0.0 2.3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Pyridox_oxidase PF01243.15 gi|20091387|ref|NP_617462.1| - 1.9e-21 75.8 0.0 2.3e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|20091387|ref|NP_617462.1| - 3.4e-08 33.4 0.0 4.6e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PAS_3 PF08447.6 gi|20091388|ref|NP_617463.1| - 7.3e-19 67.6 0.1 1.1e-18 67.0 0.1 1.3 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|20091388|ref|NP_617463.1| - 1.2e-14 55.0 0.1 1.8e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|20091388|ref|NP_617463.1| - 1.3e-07 31.8 0.0 2e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|20091388|ref|NP_617463.1| - 6.9e-06 26.3 0.0 1.3e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|20091388|ref|NP_617463.1| - 0.0012 18.5 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|20091388|ref|NP_617463.1| - 0.0033 17.4 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold HEAT_2 PF13646.1 gi|20091389|ref|NP_617464.1| - 6e-39 132.2 18.5 3.6e-11 43.1 0.5 4.5 2 1 3 5 5 5 5 HEAT repeats HEAT PF02985.17 gi|20091389|ref|NP_617464.1| - 2.4e-16 58.2 11.2 0.6 10.3 0.0 9.2 9 0 0 9 9 9 5 HEAT repeat DUF2435 PF10363.4 gi|20091389|ref|NP_617464.1| - 3.5e-07 30.0 0.6 0.2 11.5 0.0 6.5 2 2 4 6 6 6 1 Protein of unknown function (DUF2435) Adaptin_N PF01602.15 gi|20091389|ref|NP_617464.1| - 2.6e-06 26.0 0.1 0.0064 14.8 0.0 3.0 1 1 0 2 2 2 2 Adaptin N terminal region HEAT_EZ PF13513.1 gi|20091389|ref|NP_617464.1| - 7e-05 23.1 6.7 14 6.2 0.0 6.9 6 2 2 8 8 8 2 HEAT-like repeat Cnd1 PF12717.2 gi|20091389|ref|NP_617464.1| - 0.003 17.4 0.5 0.97 9.2 0.0 4.2 3 2 1 4 4 4 1 non-SMC mitotic condensation complex subunit 1 RICTOR_V PF14668.1 gi|20091389|ref|NP_617464.1| - 0.015 15.2 0.0 18 5.3 0.0 3.9 3 1 1 4 4 4 0 Rapamycin-insensitive companion of mTOR, domain 5 KorB PF08535.5 gi|20091389|ref|NP_617464.1| - 0.047 13.8 0.7 2.6 8.2 0.0 3.5 2 1 1 3 3 3 0 KorB domain Cohesin_HEAT PF12765.2 gi|20091389|ref|NP_617464.1| - 2.2 8.3 0.0 2.2 8.3 0.0 5.4 7 0 0 7 7 7 0 HEAT repeat associated with sister chromatid cohesion DDE_Tnp_1_6 PF13751.1 gi|20091390|ref|NP_617465.1| - 5.3e-19 68.4 0.2 6.5e-19 68.1 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20091390|ref|NP_617465.1| - 0.00019 21.0 0.0 0.00025 20.6 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|20091391|ref|NP_617466.1| - 8.9e-29 99.1 0.2 2.4e-28 97.7 0.1 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.1 gi|20091391|ref|NP_617466.1| - 1.4e-16 60.4 1.2 1.4e-16 60.4 0.8 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20091391|ref|NP_617466.1| - 1.2e-13 51.0 5.5 4.5e-13 49.2 3.8 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20091392|ref|NP_617467.1| - 1.1e-17 63.6 0.0 2.5e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|20091392|ref|NP_617467.1| - 6.6e-13 48.6 0.4 1.3e-12 47.7 0.3 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|20091392|ref|NP_617467.1| - 0.011 15.7 5.9 0.015 15.3 2.6 2.4 2 1 0 2 2 2 0 Transposase DDE domain AhpC-TSA PF00578.16 gi|20091392|ref|NP_617467.1| - 0.016 14.8 0.4 0.035 13.7 0.3 1.5 1 0 0 1 1 1 0 AhpC/TSA family DDE_Tnp_1_2 PF13586.1 gi|20091392|ref|NP_617467.1| - 0.029 14.5 0.0 0.1 12.8 0.0 1.9 1 0 0 1 1 1 0 Transposase DDE domain HTH_40 PF14493.1 gi|20091392|ref|NP_617467.1| - 0.52 10.5 4.3 10 6.4 1.3 3.6 3 2 0 3 3 3 0 Helix-turn-helix domain MULE PF10551.4 gi|20091393|ref|NP_617468.1| - 6.6e-11 42.2 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20091393|ref|NP_617468.1| - 0.00049 19.4 2.1 0.0017 17.5 1.5 1.7 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20091393|ref|NP_617468.1| - 0.065 12.9 0.7 0.1 12.3 0.2 1.5 1 1 0 1 1 1 0 Borna disease virus P24 protein TF_Zn_Ribbon PF08271.7 gi|20091393|ref|NP_617468.1| - 0.28 10.5 2.8 1.3 8.4 0.4 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|20091393|ref|NP_617468.1| - 0.29 11.4 3.2 1.1 9.6 2.2 1.9 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|20091393|ref|NP_617468.1| - 0.3 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|20091393|ref|NP_617468.1| - 0.48 10.1 3.5 1.9 8.1 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger DUF11 PF01345.13 gi|20091394|ref|NP_617469.1| - 2.6e-20 72.2 0.6 1.8e-13 50.3 0.1 3.7 3 0 0 3 3 3 3 Domain of unknown function DUF11 BatD PF13584.1 gi|20091394|ref|NP_617469.1| - 8.9e-10 37.7 5.6 5.9e-06 25.1 0.3 2.5 3 0 0 3 3 3 2 Oxygen tolerance CARDB PF07705.6 gi|20091394|ref|NP_617469.1| - 9.3e-10 38.4 10.7 0.0015 18.5 0.1 3.8 4 0 0 4 4 4 3 CARDB TRAP_beta PF05753.9 gi|20091394|ref|NP_617469.1| - 1.3e-08 34.2 6.2 0.0024 17.0 0.1 3.3 2 1 1 3 3 3 3 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.5 gi|20091394|ref|NP_617469.1| - 1.6e-05 24.5 5.1 0.052 13.0 0.0 3.6 1 1 0 3 3 3 2 Protein of unknown function (DUF2393) A2M_N_2 PF07703.9 gi|20091394|ref|NP_617469.1| - 0.0042 16.8 1.0 3.7 7.3 0.1 3.0 2 1 1 3 3 3 2 Alpha-2-macroglobulin family N-terminal region NPCBM_assoc PF10633.4 gi|20091394|ref|NP_617469.1| - 0.032 14.2 5.1 8.4 6.5 0.1 4.2 5 0 0 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1411 PF07199.6 gi|20091394|ref|NP_617469.1| - 0.061 12.7 3.6 0.27 10.6 0.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1411) Glyco_hydro_2 PF00703.16 gi|20091394|ref|NP_617469.1| - 0.096 13.1 6.8 4.3 7.8 0.2 3.7 3 0 0 3 3 3 0 Glycosyl hydrolases family 2 DHHA1 PF02272.14 gi|20091395|ref|NP_617470.1| - 8.6e-17 60.6 0.3 2e-16 59.4 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|20091395|ref|NP_617470.1| - 3.1e-07 30.1 0.0 7.4e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 DHH family DNA_Packaging_2 PF11123.3 gi|20091395|ref|NP_617470.1| - 0.039 13.8 0.0 0.6 10.0 0.0 2.6 3 0 0 3 3 3 0 DNA packaging protein MMR_HSR1 PF01926.18 gi|20091396|ref|NP_617471.1| - 8.9e-16 57.8 0.0 1.3e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|20091396|ref|NP_617471.1| - 2.8e-11 42.9 0.1 9.2e-10 38.0 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|20091396|ref|NP_617471.1| - 7e-06 25.5 0.0 0.00061 19.2 0.0 2.1 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Septin PF00735.13 gi|20091396|ref|NP_617471.1| - 6.3e-05 22.1 0.0 0.0001 21.4 0.0 1.4 1 0 0 1 1 1 1 Septin MobB PF03205.9 gi|20091396|ref|NP_617471.1| - 0.0015 18.2 1.2 0.009 15.7 0.0 2.3 2 1 1 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|20091396|ref|NP_617471.1| - 0.0026 17.6 0.1 0.0053 16.6 0.1 1.5 1 1 0 1 1 1 1 Dynamin family DUF258 PF03193.11 gi|20091396|ref|NP_617471.1| - 0.0042 16.3 0.3 0.017 14.3 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20091396|ref|NP_617471.1| - 0.0042 17.3 0.0 0.0086 16.3 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20091396|ref|NP_617471.1| - 0.028 15.2 0.3 0.095 13.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|20091396|ref|NP_617471.1| - 0.057 13.9 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|20091396|ref|NP_617471.1| - 0.092 12.2 0.0 0.39 10.2 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|20091396|ref|NP_617471.1| - 0.15 11.3 0.1 0.35 10.0 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DNA_ligase_A_M PF01068.16 gi|20091397|ref|NP_617472.1| - 3.5e-55 186.5 0.1 5.9e-55 185.7 0.1 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|20091397|ref|NP_617472.1| - 6.3e-45 153.1 1.0 2.2e-44 151.3 0.5 2.0 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|20091397|ref|NP_617472.1| - 2.1e-21 76.1 0.0 5e-21 74.9 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|20091397|ref|NP_617472.1| - 0.007 16.0 0.0 0.49 10.0 0.0 2.7 1 1 0 1 1 1 1 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.1 gi|20091397|ref|NP_617472.1| - 0.11 12.1 0.7 2 8.1 0.5 2.4 1 1 0 1 1 1 0 DNA ligase OB-like domain Homoserine_dh PF00742.14 gi|20091398|ref|NP_617473.1| - 2.6e-59 199.8 0.5 6.6e-59 198.5 0.1 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|20091398|ref|NP_617473.1| - 1.1e-09 38.7 0.4 2.1e-09 37.7 0.3 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|20091398|ref|NP_617473.1| - 0.00038 20.1 0.6 0.00094 18.8 0.4 1.8 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|20091398|ref|NP_617473.1| - 0.001 18.1 0.4 0.0022 17.0 0.3 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase DXP_reductoisom PF02670.11 gi|20091398|ref|NP_617473.1| - 0.0065 17.0 0.3 0.014 15.8 0.2 1.7 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF2007 PF09413.5 gi|20091399|ref|NP_617474.1| - 0.021 14.6 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2007) ACT PF01842.20 gi|20091399|ref|NP_617474.1| - 0.055 12.9 0.5 1.9 8.0 0.0 2.6 1 1 2 3 3 3 0 ACT domain HTH_24 PF13412.1 gi|20091400|ref|NP_617475.1| - 5.3e-06 25.7 0.5 1e-05 24.8 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding CarboxypepD_reg PF13620.1 gi|20091400|ref|NP_617475.1| - 8.3e-05 22.5 0.1 0.0017 18.3 0.0 2.6 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain MarR_2 PF12802.2 gi|20091400|ref|NP_617475.1| - 0.00035 20.1 0.0 0.00072 19.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20091400|ref|NP_617475.1| - 0.0019 17.8 0.1 0.0045 16.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|20091400|ref|NP_617475.1| - 0.0022 17.7 0.1 0.0042 16.8 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|20091400|ref|NP_617475.1| - 0.0035 17.0 0.1 0.0081 15.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20091400|ref|NP_617475.1| - 0.0075 16.5 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain FeoC PF09012.5 gi|20091400|ref|NP_617475.1| - 0.016 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF4480 PF13715.1 gi|20091400|ref|NP_617475.1| - 0.025 14.6 0.6 0.11 12.5 0.0 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4480) Penicillinase_R PF03965.11 gi|20091400|ref|NP_617475.1| - 0.03 14.4 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.5 gi|20091400|ref|NP_617475.1| - 0.087 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MULE PF10551.4 gi|20091403|ref|NP_617478.1| - 9.8e-13 48.0 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091403|ref|NP_617478.1| - 0.021 13.3 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091403|ref|NP_617478.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20091403|ref|NP_617478.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20091403|ref|NP_617478.1| - 0.04 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091403|ref|NP_617478.1| - 0.081 12.6 1.7 4.8 6.9 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091403|ref|NP_617478.1| - 0.85 9.9 8.6 0.11 12.7 1.8 2.7 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091403|ref|NP_617478.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger IstB_IS21 PF01695.12 gi|20091404|ref|NP_617479.1| - 0.0002 20.7 0.2 0.00038 19.9 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein Mec-17 PF05301.6 gi|20091404|ref|NP_617479.1| - 0.063 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 rve PF00665.21 gi|20091405|ref|NP_617480.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091405|ref|NP_617480.1| - 3e-05 23.4 0.0 7.6e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20091405|ref|NP_617480.1| - 0.00095 18.6 0.1 0.0023 17.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20091405|ref|NP_617480.1| - 0.0018 17.7 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091405|ref|NP_617480.1| - 0.0059 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|20091405|ref|NP_617480.1| - 0.009 15.6 0.0 0.024 14.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|20091405|ref|NP_617480.1| - 0.013 15.0 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 HTH domain MerR_1 PF13411.1 gi|20091405|ref|NP_617480.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_5 PF01022.15 gi|20091405|ref|NP_617480.1| - 0.022 14.4 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|20091405|ref|NP_617480.1| - 0.031 13.8 0.0 0.075 12.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2312 PF10073.4 gi|20091405|ref|NP_617480.1| - 0.043 13.1 0.0 2.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_7 PF02796.10 gi|20091405|ref|NP_617480.1| - 0.047 13.5 0.2 0.9 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|20091405|ref|NP_617480.1| - 0.05 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF746 PF05344.6 gi|20091405|ref|NP_617480.1| - 0.062 12.8 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|20091405|ref|NP_617480.1| - 0.076 13.0 0.0 0.25 11.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|20091405|ref|NP_617480.1| - 0.083 12.2 0.8 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|20091405|ref|NP_617480.1| - 0.087 12.6 0.2 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix WD40 PF00400.27 gi|20091406|ref|NP_617481.1| - 1.2e-133 430.7 41.9 2.1e-10 40.0 0.0 17.3 17 0 0 17 17 17 16 WD domain, G-beta repeat eIF2A PF08662.6 gi|20091406|ref|NP_617481.1| - 3.4e-35 121.5 25.5 2.1e-05 24.3 0.5 8.0 1 1 6 7 7 7 7 Eukaryotic translation initiation factor eIF2A Nup160 PF11715.3 gi|20091406|ref|NP_617481.1| - 5.9e-20 70.9 31.3 0.038 12.1 0.5 11.7 2 2 6 9 9 9 8 Nucleoporin Nup120/160 PD40 PF07676.7 gi|20091406|ref|NP_617481.1| - 1.4e-19 69.3 17.4 2 8.1 0.0 15.6 16 0 0 16 16 16 2 WD40-like Beta Propeller Repeat Cytochrom_D1 PF02239.11 gi|20091406|ref|NP_617481.1| - 2.7e-13 48.9 17.7 0.00066 18.0 0.1 7.0 3 3 2 7 7 7 6 Cytochrome D1 heme domain Gmad1 PF10647.4 gi|20091406|ref|NP_617481.1| - 1.5e-10 40.9 15.3 0.00084 18.8 0.3 5.6 3 2 0 5 5 5 3 Lipoprotein LpqB beta-propeller domain PQQ_2 PF13360.1 gi|20091406|ref|NP_617481.1| - 2.1e-07 30.6 26.5 5.2e-05 22.8 3.7 5.0 2 1 2 4 4 4 3 PQQ-like domain Ricin_B_lectin PF00652.17 gi|20091406|ref|NP_617481.1| - 7.2e-07 29.2 8.6 0.66 10.0 0.1 5.8 3 2 3 6 6 6 2 Ricin-type beta-trefoil lectin domain DUF1797 PF08796.5 gi|20091406|ref|NP_617481.1| - 0.00023 20.9 0.0 8.9 6.2 0.0 6.9 6 2 2 8 8 8 1 Protein of unknown function (DUF1797) Acetyltransf_10 PF13673.1 gi|20091406|ref|NP_617481.1| - 0.0019 18.2 2.6 52 3.9 0.0 6.5 8 1 0 8 8 8 0 Acetyltransferase (GNAT) domain L-fibroin PF05849.6 gi|20091406|ref|NP_617481.1| - 0.0021 17.4 3.8 0.4 9.9 0.1 3.1 3 0 0 3 3 3 2 Fibroin light chain (L-fibroin) CD34_antigen PF06365.7 gi|20091406|ref|NP_617481.1| - 0.0095 15.6 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 1 CD34/Podocalyxin family Plasmod_Pvs28 PF06247.6 gi|20091406|ref|NP_617481.1| - 0.023 14.2 0.3 0.44 10.1 0.1 2.3 2 0 0 2 2 2 0 Plasmodium ookinete surface protein Pvs28 DsrH PF04077.7 gi|20091406|ref|NP_617481.1| - 0.028 14.1 0.2 4.3 7.0 0.0 4.4 5 0 0 5 5 5 0 DsrH like protein Mid2 PF04478.7 gi|20091406|ref|NP_617481.1| - 0.082 12.3 21.7 18 4.7 0.0 8.8 7 3 4 11 11 11 0 Mid2 like cell wall stress sensor Borrelia_rep PF03183.8 gi|20091407|ref|NP_617482.1| - 0.36 10.6 0.3 0.36 10.6 0.2 1.6 2 0 0 2 2 2 0 Borrelia repeat protein Phage_integrase PF00589.17 gi|20091408|ref|NP_617483.1| - 1.3e-06 28.2 0.0 2.1e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|20091408|ref|NP_617483.1| - 3.5e-06 27.2 0.0 1.7e-05 25.0 0.0 2.2 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|20091408|ref|NP_617483.1| - 0.001 19.1 0.1 0.033 14.3 0.1 3.0 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF3979 PF13141.1 gi|20091408|ref|NP_617483.1| - 0.026 14.4 0.0 1.1 9.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3979) DUF1628 PF07790.6 gi|20091411|ref|NP_617486.1| - 0.055 14.2 0.2 0.095 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Laminin_G_3 PF13385.1 gi|20091412|ref|NP_617487.1| - 4.6e-18 65.9 3.9 4.6e-18 65.9 2.7 2.6 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.11 gi|20091412|ref|NP_617487.1| - 4.7e-06 25.7 1.6 4.7e-06 25.7 1.1 2.4 1 1 2 3 3 3 1 Sialidase, N-terminal domain Pentaxin PF00354.12 gi|20091412|ref|NP_617487.1| - 0.0081 15.6 0.8 0.072 12.5 0.0 2.3 2 0 0 2 2 2 1 Pentaxin family DUF3098 PF11297.3 gi|20091413|ref|NP_617488.1| - 0.017 14.8 0.7 0.042 13.5 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3098) DUF788 PF05620.6 gi|20091413|ref|NP_617488.1| - 0.033 14.0 2.7 0.036 13.9 1.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF788) DUF4131 PF13567.1 gi|20091416|ref|NP_617491.1| - 0.8 9.0 2.8 1.3 8.4 1.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) AAA_17 PF13207.1 gi|20091417|ref|NP_617492.1| - 9.3e-07 29.6 0.0 2.7e-06 28.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|20091417|ref|NP_617492.1| - 0.0033 17.1 0.1 0.012 15.3 0.0 2.1 1 1 1 2 2 2 1 Archaeal ATPase AAA_29 PF13555.1 gi|20091417|ref|NP_617492.1| - 0.0054 16.2 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|20091417|ref|NP_617492.1| - 0.0058 16.9 0.0 0.011 16.0 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|20091417|ref|NP_617492.1| - 0.0061 16.8 0.6 0.022 15.0 0.0 2.3 3 1 0 3 3 3 1 AAA domain RNA_helicase PF00910.17 gi|20091417|ref|NP_617492.1| - 0.0065 16.6 0.0 0.016 15.3 0.0 1.7 1 0 0 1 1 1 1 RNA helicase G-alpha PF00503.15 gi|20091417|ref|NP_617492.1| - 0.0068 15.1 0.3 0.0097 14.6 0.2 1.4 1 1 0 1 1 1 1 G-protein alpha subunit NTPase_1 PF03266.10 gi|20091417|ref|NP_617492.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 NTPase T2SE PF00437.15 gi|20091417|ref|NP_617492.1| - 0.012 14.5 0.0 0.031 13.1 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|20091417|ref|NP_617492.1| - 0.036 14.0 0.0 0.071 13.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|20091417|ref|NP_617492.1| - 0.064 13.3 0.0 0.16 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20091417|ref|NP_617492.1| - 0.068 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|20091417|ref|NP_617492.1| - 0.069 12.8 0.0 0.23 11.1 0.0 1.9 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|20091417|ref|NP_617492.1| - 0.07 12.5 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|20091417|ref|NP_617492.1| - 0.072 12.9 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|20091417|ref|NP_617492.1| - 0.074 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|20091417|ref|NP_617492.1| - 0.13 11.2 2.4 0.31 9.9 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Miro PF08477.8 gi|20091417|ref|NP_617492.1| - 0.31 11.5 3.5 0.48 10.9 0.3 2.6 2 1 0 2 2 2 0 Miro-like protein PRA1 PF03208.14 gi|20091419|ref|NP_617494.1| - 0.95 8.7 4.5 4.4 6.6 0.3 2.4 2 1 0 2 2 2 0 PRA1 family protein Cupin_2 PF07883.6 gi|20091423|ref|NP_617498.1| - 0.057 12.9 0.0 0.098 12.1 0.0 1.3 1 0 0 1 1 1 0 Cupin domain TrkA_C PF02080.16 gi|20091423|ref|NP_617498.1| - 0.062 12.8 0.0 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 TrkA-C domain Peptidase_A24 PF01478.13 gi|20091424|ref|NP_617499.1| - 5.9e-13 48.8 12.5 8e-13 48.4 8.6 1.1 1 0 0 1 1 1 1 Type IV leader peptidase family TraX PF05857.6 gi|20091424|ref|NP_617499.1| - 0.65 9.6 9.9 0.91 9.1 6.9 1.2 1 0 0 1 1 1 0 TraX protein PrgI PF12666.2 gi|20091424|ref|NP_617499.1| - 8 6.6 16.6 2.9 8.0 1.9 3.1 1 1 2 3 3 3 0 PrgI family protein Phage_integrase PF00589.17 gi|20091425|ref|NP_617500.1| - 2.2e-12 47.0 0.5 3.4e-12 46.3 0.3 1.3 1 1 0 1 1 1 1 Phage integrase family PFO_beta_C PF12367.3 gi|20091426|ref|NP_617501.1| - 0.042 13.7 0.2 16 5.5 0.0 2.8 3 0 0 3 3 3 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Nup96 PF12110.3 gi|20091426|ref|NP_617501.1| - 0.16 11.0 1.5 3.8 6.5 0.0 2.9 3 0 0 3 3 3 0 Nuclear protein 96 Nitr_red_bet_C PF14711.1 gi|20091426|ref|NP_617501.1| - 0.28 10.7 4.1 2.3 7.7 0.0 3.4 4 0 0 4 4 4 0 Respiratory nitrate reductase beta C-terminal DUF4064 PF13273.1 gi|20091426|ref|NP_617501.1| - 0.37 10.9 28.6 0.26 11.4 4.5 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) DUF2663 PF10864.3 gi|20091426|ref|NP_617501.1| - 0.81 9.9 11.5 0.85 9.8 0.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2663) VASP_tetra PF08776.6 gi|20091426|ref|NP_617501.1| - 3.3 7.1 12.7 32 3.9 0.1 4.3 4 0 0 4 4 4 0 VASP tetramerisation domain OAD_gamma PF04277.8 gi|20091426|ref|NP_617501.1| - 9.8 6.6 12.7 11 6.5 0.1 4.4 4 0 0 4 4 4 0 Oxaloacetate decarboxylase, gamma chain SRP54_N PF02881.14 gi|20091427|ref|NP_617502.1| - 0.023 14.7 0.3 0.065 13.3 0.2 1.8 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain HATPase_c_3 PF13589.1 gi|20091428|ref|NP_617503.1| - 0.001 18.7 0.7 0.0026 17.4 0.5 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|20091428|ref|NP_617503.1| - 0.0015 18.2 0.1 0.0032 17.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3382 PF11862.3 gi|20091429|ref|NP_617504.1| - 0.29 11.0 5.3 0.46 10.4 3.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) Phage_GPA PF05840.8 gi|20091430|ref|NP_617505.1| - 0.012 14.3 0.3 0.15 10.7 0.2 2.1 1 1 0 1 1 1 0 Bacteriophage replication gene A protein (GPA) DUF3296 PF11726.3 gi|20091430|ref|NP_617505.1| - 0.029 13.9 0.0 0.093 12.2 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3296) Lar_restr_allev PF14354.1 gi|20091431|ref|NP_617506.1| - 0.0092 16.2 5.3 0.048 13.9 1.3 2.5 2 1 0 2 2 2 1 Restriction alleviation protein Lar DZR PF12773.2 gi|20091431|ref|NP_617506.1| - 0.017 14.9 6.7 1.7 8.5 4.2 2.9 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20091431|ref|NP_617506.1| - 0.079 12.4 6.6 2.1 7.9 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|20091431|ref|NP_617506.1| - 0.11 11.6 11.9 15 4.9 7.0 3.3 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20091431|ref|NP_617506.1| - 0.16 11.9 5.8 6.2 6.8 0.0 3.5 3 0 0 3 3 3 0 Zinc ribbon domain DUF2752 PF10825.3 gi|20091431|ref|NP_617506.1| - 0.17 11.9 1.4 21 5.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-LITAF-like PF10601.4 gi|20091431|ref|NP_617506.1| - 0.24 11.3 3.1 2.1 8.2 0.0 2.9 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain HypA PF01155.14 gi|20091431|ref|NP_617506.1| - 0.3 10.8 3.0 1.8 8.3 0.8 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|20091431|ref|NP_617506.1| - 0.65 9.8 9.4 6.9 6.5 0.8 3.2 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|20091431|ref|NP_617506.1| - 1.2 9.2 0.1 1.2 9.2 0.1 3.5 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|20091431|ref|NP_617506.1| - 2.1 8.4 14.4 3.8 7.6 0.0 3.6 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|20091431|ref|NP_617506.1| - 3.2 7.4 14.7 1.1 8.9 0.2 3.2 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Sgf11 PF08209.6 gi|20091431|ref|NP_617506.1| - 3.2 7.1 8.1 19 4.6 0.1 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Rad50_zn_hook PF04423.9 gi|20091431|ref|NP_617506.1| - 6.7 6.2 0.0 6.7 6.2 0.0 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif Zn_ribbon_recom PF13408.1 gi|20091431|ref|NP_617506.1| - 8.6 6.7 12.4 3.4 7.9 0.9 3.2 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain Pilus_CpaD PF09476.5 gi|20091433|ref|NP_617508.1| - 0.007 15.8 0.0 0.0088 15.5 0.0 1.1 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) TPR_1 PF00515.23 gi|20091435|ref|NP_617510.1| - 6.2e-11 41.4 0.0 1.2e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20091435|ref|NP_617510.1| - 3.5e-07 29.7 0.0 8e-07 28.6 0.0 1.6 2 0 0 2 2 2 1 TPR repeat TPR_2 PF07719.12 gi|20091435|ref|NP_617510.1| - 3.5e-07 29.6 0.0 6.4e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20091435|ref|NP_617510.1| - 2.1e-06 27.1 0.2 5.7e-06 25.7 0.1 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20091435|ref|NP_617510.1| - 5.6e-05 22.6 0.0 0.00017 21.1 0.0 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20091435|ref|NP_617510.1| - 0.00015 21.6 0.0 0.00027 20.7 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|20091435|ref|NP_617510.1| - 0.0011 18.4 1.5 0.0014 18.0 1.0 1.4 1 0 0 1 1 1 1 26S proteasome subunit RPN7 RHH_2 PF03693.9 gi|20091435|ref|NP_617510.1| - 0.0058 16.7 0.0 0.0086 16.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) RHH_1 PF01402.16 gi|20091435|ref|NP_617510.1| - 0.024 14.5 0.1 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family TPR_9 PF13371.1 gi|20091435|ref|NP_617510.1| - 0.025 14.4 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat MIT PF04212.13 gi|20091435|ref|NP_617510.1| - 0.038 13.8 0.1 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain DUF2989 PF11207.3 gi|20091435|ref|NP_617510.1| - 0.041 13.3 2.7 0.054 12.9 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2989) TPR_21 PF09976.4 gi|20091435|ref|NP_617510.1| - 0.043 13.7 0.1 0.079 12.8 0.1 1.6 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20091435|ref|NP_617510.1| - 0.065 13.7 0.3 0.22 12.0 0.1 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat zf-AN1 PF01428.11 gi|20091436|ref|NP_617511.1| - 7.3e-06 25.7 22.5 0.0083 15.9 5.0 2.3 2 0 0 2 2 2 2 AN1-like Zinc finger FYVE PF01363.16 gi|20091436|ref|NP_617511.1| - 7.6e-06 25.7 9.8 0.0061 16.4 0.4 2.4 2 0 0 2 2 2 2 FYVE zinc finger YwqJ-deaminase PF14431.1 gi|20091436|ref|NP_617511.1| - 0.082 12.7 0.8 0.75 9.6 0.0 2.4 2 0 0 2 2 2 0 YwqJ-like deaminase C1_1 PF00130.17 gi|20091436|ref|NP_617511.1| - 0.4 10.4 21.9 0.83 9.4 6.4 2.4 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|20091436|ref|NP_617511.1| - 0.77 9.6 21.9 81 3.1 0.2 4.0 2 1 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|20091436|ref|NP_617511.1| - 0.8 9.4 20.3 0.24 11.1 4.6 3.5 2 2 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-B_box PF00643.19 gi|20091436|ref|NP_617511.1| - 1 9.2 26.7 3.1 7.7 7.1 2.4 2 0 0 2 2 2 0 B-box zinc finger Zn-ribbon_8 PF09723.5 gi|20091436|ref|NP_617511.1| - 1.4 8.9 0.0 1.4 8.9 0.0 3.9 4 0 0 4 4 4 0 Zinc ribbon domain IBR PF01485.16 gi|20091436|ref|NP_617511.1| - 2.5 8.0 23.0 0.95 9.3 4.8 2.7 2 1 0 2 2 2 0 IBR domain Serpin PF00079.15 gi|20091438|ref|NP_617513.1| - 3.4e-16 59.3 0.1 3.7e-16 59.2 0.1 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Serpin PF00079.15 gi|20091439|ref|NP_617514.1| - 5.8e-87 292.2 5.0 7e-87 291.9 3.5 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Cas_Csy4 PF09618.5 gi|20091440|ref|NP_617515.1| - 0.088 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy4) AIM24 PF01987.12 gi|20091441|ref|NP_617516.1| - 1.5e-46 158.6 2.2 1.9e-46 158.2 1.5 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 CoiA PF06054.6 gi|20091441|ref|NP_617516.1| - 0.17 10.7 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Competence protein CoiA-like family Baseplate_J PF04865.9 gi|20091442|ref|NP_617517.1| - 0.041 13.2 0.3 0.049 12.9 0.2 1.1 1 0 0 1 1 1 0 Baseplate J-like protein HEPN PF05168.9 gi|20091443|ref|NP_617518.1| - 3.5e-17 62.3 1.5 4.4e-17 62.0 0.4 1.5 1 1 1 2 2 2 1 HEPN domain DUF4398 PF14346.1 gi|20091443|ref|NP_617518.1| - 0.1 12.6 0.2 0.27 11.2 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) NTP_transf_2 PF01909.18 gi|20091444|ref|NP_617519.1| - 1.1e-08 35.2 0.1 1.9e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_6 PF01418.12 gi|20091444|ref|NP_617519.1| - 0.0076 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_11 PF08279.7 gi|20091444|ref|NP_617519.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF2204 PF09970.4 gi|20091444|ref|NP_617519.1| - 0.049 13.1 0.1 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Endotoxin_N PF03945.9 gi|20091446|ref|NP_617521.1| - 0.00015 21.2 0.1 0.00019 20.8 0.1 1.2 1 0 0 1 1 1 1 delta endotoxin, N-terminal domain Endotoxin_N PF03945.9 gi|20091447|ref|NP_617522.1| - 1.9e-17 63.3 0.4 2.4e-17 63.1 0.3 1.1 1 0 0 1 1 1 1 delta endotoxin, N-terminal domain Phasin PF05597.6 gi|20091448|ref|NP_617523.1| - 2.5e-08 33.7 8.5 7.6e-07 28.9 5.9 2.0 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) GatB_Yqey PF02637.13 gi|20091448|ref|NP_617523.1| - 0.00083 19.0 4.9 0.00099 18.8 3.4 1.1 1 0 0 1 1 1 1 GatB domain DUF883 PF05957.8 gi|20091448|ref|NP_617523.1| - 0.0043 17.4 1.6 0.0043 17.4 1.1 1.6 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) OCD_Mu_crystall PF02423.10 gi|20091448|ref|NP_617523.1| - 0.013 14.3 0.0 0.016 14.0 0.0 1.1 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Sugarporin_N PF11471.3 gi|20091448|ref|NP_617523.1| - 0.016 14.8 3.4 0.13 11.9 1.3 2.4 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension PRESAN PF09687.5 gi|20091448|ref|NP_617523.1| - 0.027 14.5 5.1 0.035 14.1 3.6 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal UvrD-helicase PF00580.16 gi|20091448|ref|NP_617523.1| - 0.03 13.6 1.9 0.032 13.5 1.3 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain FliG_N PF14842.1 gi|20091448|ref|NP_617523.1| - 0.048 13.7 2.0 0.06 13.4 1.0 1.5 1 1 0 1 1 1 0 FliG N-terminal domain TAFH PF07531.9 gi|20091448|ref|NP_617523.1| - 0.063 12.9 0.5 0.1 12.2 0.2 1.5 1 1 0 1 1 1 0 NHR1 homology to TAF DUF1319 PF07028.6 gi|20091448|ref|NP_617523.1| - 0.11 12.6 8.5 0.5 10.5 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) BMFP PF04380.8 gi|20091448|ref|NP_617523.1| - 0.16 12.1 7.7 0.93 9.6 5.2 2.2 1 1 0 1 1 1 0 Membrane fusogenic activity TipAS PF07739.8 gi|20091448|ref|NP_617523.1| - 0.17 12.2 3.5 4.2 7.7 0.9 2.1 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain ISG65-75 PF11727.3 gi|20091448|ref|NP_617523.1| - 0.58 9.1 5.7 0.61 9.0 4.0 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF1002 PF06207.6 gi|20091448|ref|NP_617523.1| - 0.93 8.7 5.2 1.1 8.4 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) DUF4140 PF13600.1 gi|20091448|ref|NP_617523.1| - 1.7 9.1 4.7 6.7 7.2 3.2 1.9 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF2680 PF10925.3 gi|20091448|ref|NP_617523.1| - 1.7 8.5 5.1 7.5 6.5 0.4 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2680) Prefoldin PF02996.12 gi|20091448|ref|NP_617523.1| - 1.7 8.3 10.0 4.9 6.8 1.5 2.2 1 1 1 2 2 2 0 Prefoldin subunit Pox_A_type_inc PF04508.7 gi|20091448|ref|NP_617523.1| - 2 8.4 13.1 0.88 9.5 1.2 3.7 3 1 1 4 4 4 0 Viral A-type inclusion protein repeat RRF PF01765.14 gi|20091448|ref|NP_617523.1| - 3.3 7.1 11.3 1.9 7.9 6.1 1.7 1 1 0 1 1 1 0 Ribosome recycling factor MULE PF10551.4 gi|20091449|ref|NP_617524.1| - 6.7e-11 42.2 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20091449|ref|NP_617524.1| - 0.00055 19.2 1.9 0.0021 17.3 1.3 1.8 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20091449|ref|NP_617524.1| - 0.044 13.5 1.4 0.1 12.3 0.2 1.9 1 1 1 2 2 2 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20091449|ref|NP_617524.1| - 0.18 12.1 2.4 0.74 10.1 1.7 2.0 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|20091449|ref|NP_617524.1| - 0.25 10.7 2.8 1.3 8.4 0.4 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|20091449|ref|NP_617524.1| - 0.26 10.9 2.6 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.1 gi|20091449|ref|NP_617524.1| - 0.3 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M3_N PF08439.5 gi|20091449|ref|NP_617524.1| - 2.2 8.4 6.7 0.31 11.1 1.0 2.4 3 0 0 3 3 3 0 Oligopeptidase F DUF1269 PF06897.7 gi|20091450|ref|NP_617525.1| - 2.1e-43 146.5 0.0 3.6e-43 145.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Gly-zipper_Omp PF13488.1 gi|20091450|ref|NP_617525.1| - 8.2e-05 22.1 2.0 8.2e-05 22.1 1.4 1.7 2 0 0 2 2 2 1 Glycine zipper Bacteriocin_IIc PF10439.4 gi|20091450|ref|NP_617525.1| - 0.00036 20.6 0.9 0.00063 19.8 0.6 1.6 1 0 0 1 1 1 1 Bacteriocin class II with double-glycine leader peptide Gly-zipper_OmpA PF13436.1 gi|20091450|ref|NP_617525.1| - 0.005 16.4 0.1 0.0082 15.7 0.0 1.3 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Rick_17kDa_Anti PF05433.10 gi|20091450|ref|NP_617525.1| - 0.0065 16.1 3.5 0.011 15.3 2.1 1.6 2 0 0 2 2 2 1 Glycine zipper 2TM domain Hemolysin_N PF12563.3 gi|20091450|ref|NP_617525.1| - 0.043 13.2 0.4 0.066 12.6 0.2 1.3 1 0 0 1 1 1 0 Hemolytic toxin N terminal Gly-zipper_YMGG PF13441.1 gi|20091450|ref|NP_617525.1| - 2.5 7.6 14.0 0.24 10.9 5.6 2.2 2 1 0 2 2 2 0 YMGG-like Gly-zipper GDE_C PF06202.9 gi|20091451|ref|NP_617526.1| - 1.6e-146 487.8 0.1 3.9e-146 486.5 0.0 1.6 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|20091451|ref|NP_617526.1| - 2.7e-68 229.5 0.0 3.9e-68 229.0 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|20091451|ref|NP_617526.1| - 4e-05 22.5 4.2 0.00021 20.1 2.4 2.3 2 1 0 2 2 2 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|20091451|ref|NP_617526.1| - 0.0022 16.4 0.4 0.15 10.4 0.0 2.6 2 1 0 2 2 2 2 Alkaline and neutral invertase Bac_rhamnosid PF05592.6 gi|20091451|ref|NP_617526.1| - 0.0058 14.8 0.0 0.0078 14.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Abhydrolase_3 PF07859.8 gi|20091452|ref|NP_617527.1| - 1.5e-61 207.6 0.1 2e-61 207.2 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20091452|ref|NP_617527.1| - 1.3e-07 31.4 0.3 9.3e-06 25.4 0.1 2.1 1 1 1 2 2 2 1 Alpha/beta hydrolase family Chlorophyllase2 PF12740.2 gi|20091452|ref|NP_617527.1| - 0.0013 17.6 0.0 0.0021 17.0 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.16 gi|20091452|ref|NP_617527.1| - 0.0014 17.8 0.1 0.0042 16.3 0.1 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.23 gi|20091452|ref|NP_617527.1| - 0.0057 15.4 0.1 0.017 13.8 0.1 1.6 1 1 0 1 1 1 1 Carboxylesterase family Phage_sheath_1 PF04984.9 gi|20091452|ref|NP_617527.1| - 0.013 13.9 0.4 0.032 12.6 0.2 1.4 1 1 0 1 1 1 0 Phage tail sheath protein AXE1 PF05448.7 gi|20091452|ref|NP_617527.1| - 0.013 14.0 0.0 0.82 8.1 0.0 2.2 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) PAF-AH_p_II PF03403.8 gi|20091452|ref|NP_617527.1| - 0.017 13.4 0.0 0.1 10.8 0.0 2.0 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DUF2424 PF10340.4 gi|20091452|ref|NP_617527.1| - 0.048 12.3 0.0 0.069 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2424) Chlorophyllase PF07224.6 gi|20091452|ref|NP_617527.1| - 0.066 11.9 0.0 0.1 11.3 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase DUF2974 PF11187.3 gi|20091452|ref|NP_617527.1| - 0.074 12.3 0.1 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Fe-ADH PF00465.14 gi|20091453|ref|NP_617528.1| - 1.3e-125 418.8 5.8 1.5e-125 418.6 4.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|20091453|ref|NP_617528.1| - 2.4e-17 63.0 4.1 4.9e-10 39.1 0.0 2.2 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase Peripla_BP_6 PF13458.1 gi|20091453|ref|NP_617528.1| - 0.048 13.0 0.3 0.43 9.8 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein Tub_2 PF04525.7 gi|20091454|ref|NP_617529.1| - 6.4e-22 77.8 0.2 8.6e-22 77.4 0.1 1.2 1 0 0 1 1 1 1 Tubby C 2 SBF PF01758.11 gi|20091455|ref|NP_617530.1| - 6.8e-10 38.6 25.5 6.8e-10 38.6 17.7 2.4 1 1 1 2 2 2 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|20091455|ref|NP_617530.1| - 1.5e-07 30.8 28.4 3.5e-07 29.6 19.7 1.6 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) DUF1467 PF07330.7 gi|20091455|ref|NP_617530.1| - 0.13 12.0 0.2 0.13 12.0 0.2 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1467) UPF0154 PF03672.8 gi|20091455|ref|NP_617530.1| - 7.7 6.2 7.6 2.9 7.5 0.4 3.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) Na_H_Exchanger PF00999.16 gi|20091456|ref|NP_617531.1| - 1.3e-25 89.7 23.2 1.6e-25 89.4 16.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MULE PF10551.4 gi|20091457|ref|NP_617532.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091457|ref|NP_617532.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091457|ref|NP_617532.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20091457|ref|NP_617532.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20091457|ref|NP_617532.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091457|ref|NP_617532.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091457|ref|NP_617532.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091457|ref|NP_617532.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger UPF0118 PF01594.11 gi|20091458|ref|NP_617533.1| - 1.7e-44 152.1 44.3 2e-44 151.9 30.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF1269 PF06897.7 gi|20091459|ref|NP_617534.1| - 7e-18 64.5 3.2 1.5e-17 63.4 1.8 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1269) Gly-zipper_OmpA PF13436.1 gi|20091459|ref|NP_617534.1| - 0.25 11.0 6.0 0.44 10.2 4.1 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_YMGG PF13441.1 gi|20091459|ref|NP_617534.1| - 2.1 7.8 22.0 3.9 7.0 15.3 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper DUF4386 PF14329.1 gi|20091461|ref|NP_617536.1| - 0.00083 18.9 8.1 0.00083 18.9 5.6 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4386) Caleosin PF05042.8 gi|20091461|ref|NP_617536.1| - 0.11 12.0 0.1 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Caleosin related protein COPI_assoc PF08507.5 gi|20091461|ref|NP_617536.1| - 0.34 10.5 4.4 0.56 9.8 0.8 2.0 1 1 1 2 2 2 0 COPI associated protein DUF1269 PF06897.7 gi|20091462|ref|NP_617537.1| - 5.2e-07 29.6 1.6 6.8e-07 29.2 0.6 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1269) DUF1269 PF06897.7 gi|20091463|ref|NP_617538.1| - 2.9e-07 30.4 1.7 4.4e-07 29.8 1.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) DUF456 PF04306.8 gi|20091463|ref|NP_617538.1| - 0.35 10.9 4.4 14 5.7 3.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF456) DUF1129 PF06570.6 gi|20091464|ref|NP_617539.1| - 0.0097 15.2 0.1 0.012 14.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) MS_channel PF00924.13 gi|20091465|ref|NP_617540.1| - 2.6e-31 108.5 0.7 2.8e-31 108.4 0.5 1.0 1 0 0 1 1 1 1 Mechanosensitive ion channel PepSY_TM_2 PF13703.1 gi|20091465|ref|NP_617540.1| - 0.00089 19.3 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 PepSY-associated TM helix DUF1269 PF06897.7 gi|20091467|ref|NP_617542.1| - 2.7e-37 126.8 0.6 3.9e-37 126.3 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) DUF456 PF04306.8 gi|20091467|ref|NP_617542.1| - 0.0037 17.2 1.2 0.0049 16.9 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF456) Gly-zipper_OmpA PF13436.1 gi|20091467|ref|NP_617542.1| - 0.016 14.8 0.1 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_YMGG PF13441.1 gi|20091467|ref|NP_617542.1| - 0.035 13.6 4.8 0.2 11.1 3.3 2.0 1 1 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|20091467|ref|NP_617542.1| - 0.057 13.0 6.0 0.11 12.2 4.1 1.4 1 0 0 1 1 1 0 Glycine zipper Sdh5 PF03937.11 gi|20091467|ref|NP_617542.1| - 0.068 12.8 0.2 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Bacteriocin_IIc PF10439.4 gi|20091467|ref|NP_617542.1| - 1.2 9.3 8.5 7.3 6.8 5.8 2.1 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Rick_17kDa_Anti PF05433.10 gi|20091467|ref|NP_617542.1| - 2.2 8.0 5.4 4.1 7.1 0.6 2.2 2 0 0 2 2 2 0 Glycine zipper 2TM domain Sulfatase PF00884.18 gi|20091468|ref|NP_617543.1| - 3.9e-90 302.1 0.0 4.9e-90 301.8 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|20091468|ref|NP_617543.1| - 5.3e-06 26.0 0.0 0.0016 17.8 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Laminin_G_3 PF13385.1 gi|20091468|ref|NP_617543.1| - 0.018 15.2 0.3 0.038 14.2 0.0 1.7 2 0 0 2 2 2 0 Concanavalin A-like lectin/glucanases superfamily DUF229 PF02995.12 gi|20091468|ref|NP_617543.1| - 0.22 9.8 0.0 0.32 9.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) UPF0118 PF01594.11 gi|20091469|ref|NP_617544.1| - 2e-45 155.2 45.7 2.2e-45 155.0 31.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 Radical_SAM PF04055.16 gi|20091470|ref|NP_617545.1| - 7.6e-12 45.7 0.0 1.5e-11 44.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.10 gi|20091470|ref|NP_617545.1| - 1.2e-10 40.6 5.9 1.2e-10 40.6 4.1 1.7 2 0 0 2 2 2 1 SEC-C motif SPASM PF13186.1 gi|20091470|ref|NP_617545.1| - 3.3e-08 33.7 0.2 8.2e-08 32.4 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|20091470|ref|NP_617545.1| - 1.4e-07 31.7 0.0 3.1e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20091470|ref|NP_617545.1| - 1.9e-05 24.6 0.0 4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Sulfatase PF00884.18 gi|20091471|ref|NP_617546.1| - 4e-62 210.1 0.0 6.3e-62 209.5 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Sulfatase_C PF14707.1 gi|20091471|ref|NP_617546.1| - 3.3e-07 30.6 0.0 7.5e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 C-terminal region of aryl-sulfatase Phosphodiest PF01663.17 gi|20091471|ref|NP_617546.1| - 0.00012 21.5 0.0 0.0081 15.5 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase RE_CfrBI PF09516.5 gi|20091471|ref|NP_617546.1| - 0.18 10.6 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 CfrBI restriction endonuclease HAD PF12710.2 gi|20091472|ref|NP_617547.1| - 4.7e-12 46.4 0.0 6.3e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Sulfatase PF00884.18 gi|20091473|ref|NP_617548.1| - 2.6e-82 276.4 0.1 3.3e-82 276.1 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Laminin_G_3 PF13385.1 gi|20091473|ref|NP_617548.1| - 0.00095 19.4 0.1 0.0029 17.8 0.0 1.9 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Phosphodiest PF01663.17 gi|20091473|ref|NP_617548.1| - 0.0017 17.7 0.0 0.2 10.9 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|20091473|ref|NP_617548.1| - 0.044 12.2 0.0 0.062 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) UPF0114 PF03350.11 gi|20091474|ref|NP_617549.1| - 1.6e-29 102.3 5.5 2.2e-29 101.8 3.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein family, UPF0114 DUF2985 PF11204.3 gi|20091474|ref|NP_617549.1| - 0.25 11.1 1.7 0.52 10.0 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2985) DUF1700 PF08006.6 gi|20091474|ref|NP_617549.1| - 9.7 5.4 11.0 2.1 7.6 5.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Abi PF02517.11 gi|20091475|ref|NP_617550.1| - 2.4e-15 56.4 9.8 2.4e-15 56.4 6.8 2.3 2 1 1 3 3 3 1 CAAX protease self-immunity Peptidase_M20 PF01546.23 gi|20091476|ref|NP_617551.1| - 7.3e-15 54.9 0.0 1.8e-14 53.7 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|20091476|ref|NP_617551.1| - 0.0026 17.4 0.0 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|20091476|ref|NP_617551.1| - 0.0029 16.4 0.0 0.24 10.1 0.0 2.7 3 0 0 3 3 3 2 M42 glutamyl aminopeptidase NUDIX PF00293.23 gi|20091478|ref|NP_617553.1| - 5.1e-11 42.3 0.0 6.1e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Colicin-DNase PF12639.2 gi|20091478|ref|NP_617553.1| - 0.013 15.7 0.0 0.014 15.6 0.0 1.1 1 0 0 1 1 1 0 DNase/tRNase domain of colicin-like bacteriocin UPF0228 PF05727.6 gi|20091479|ref|NP_617554.1| - 2e-92 305.5 18.4 1.3e-48 163.9 4.3 2.3 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0228) PASTA PF03793.14 gi|20091479|ref|NP_617554.1| - 0.02 14.5 0.2 10 5.8 0.0 2.9 2 0 0 2 2 2 0 PASTA domain CK_II_beta PF01214.13 gi|20091479|ref|NP_617554.1| - 0.054 12.9 3.1 3.6 7.0 0.2 2.3 2 0 0 2 2 2 0 Casein kinase II regulatory subunit DUF2765 PF10963.3 gi|20091479|ref|NP_617554.1| - 0.16 11.8 5.5 13 5.8 0.0 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF2765) DUF2971 PF11185.3 gi|20091479|ref|NP_617554.1| - 5.9 7.6 7.6 8.9 7.1 0.1 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF2971) SFTA2 PF15210.1 gi|20091481|ref|NP_617556.1| - 0.0031 17.0 0.0 0.0042 16.6 0.0 1.2 1 0 0 1 1 1 1 Surfactant-associated protein 2 DDE_Tnp_IS1 PF03400.8 gi|20091482|ref|NP_617557.1| - 1.2e-07 31.9 0.1 0.00046 20.3 0.1 2.2 2 0 0 2 2 2 2 IS1 transposase MEDS PF14417.1 gi|20091483|ref|NP_617558.1| - 7.5e-50 168.6 0.0 8.7e-50 168.4 0.0 1.0 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Acyl_transf_3 PF01757.17 gi|20091484|ref|NP_617559.1| - 5.3e-19 68.2 21.3 6.4e-19 67.9 14.7 1.0 1 0 0 1 1 1 1 Acyltransferase family SecE PF00584.15 gi|20091484|ref|NP_617559.1| - 0.031 13.8 0.1 0.031 13.8 0.1 2.4 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex Acyl_transf_3 PF01757.17 gi|20091485|ref|NP_617560.1| - 0.003 16.4 7.3 0.0038 16.1 5.1 1.2 1 0 0 1 1 1 1 Acyltransferase family DUF4405 PF14358.1 gi|20091485|ref|NP_617560.1| - 1.4 9.0 4.3 0.51 10.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF2207 PF09972.4 gi|20091486|ref|NP_617561.1| - 1.9e-142 475.4 4.1 2.4e-142 475.1 2.8 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) CoA_binding_3 PF13727.1 gi|20091486|ref|NP_617561.1| - 0.019 14.8 0.3 0.043 13.6 0.2 1.6 1 0 0 1 1 1 0 CoA-binding domain DUF1673 PF07895.6 gi|20091486|ref|NP_617561.1| - 5.2 6.5 8.4 0.46 9.9 1.1 2.5 4 0 0 4 4 4 0 Protein of unknown function (DUF1673) LemA PF04011.7 gi|20091487|ref|NP_617562.1| - 2.7e-67 225.5 9.0 3e-67 225.3 6.2 1.0 1 0 0 1 1 1 1 LemA family DUF1312 PF07009.6 gi|20091487|ref|NP_617562.1| - 0.059 13.1 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1312) DUF327 PF03885.8 gi|20091487|ref|NP_617562.1| - 0.078 12.8 2.1 0.11 12.3 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF327) UPF0118 PF01594.11 gi|20091487|ref|NP_617562.1| - 0.2 10.6 4.1 0.092 11.7 0.8 1.7 1 1 1 2 2 2 0 Domain of unknown function DUF20 P12 PF12669.2 gi|20091487|ref|NP_617562.1| - 0.32 11.2 0.9 0.49 10.6 0.6 1.2 1 0 0 1 1 1 0 Virus attachment protein p12 family SVM_signal PF12113.3 gi|20091487|ref|NP_617562.1| - 2.6 7.9 6.9 4.8 7.1 4.8 1.4 1 0 0 1 1 1 0 SVM protein signal sequence PGM_PMM_I PF02878.11 gi|20091488|ref|NP_617563.1| - 2.2e-41 140.5 0.2 1e-40 138.4 0.1 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|20091488|ref|NP_617563.1| - 1.4e-26 92.8 0.0 6e-26 90.7 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|20091488|ref|NP_617563.1| - 1.8e-25 89.1 0.0 3.7e-25 88.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|20091488|ref|NP_617563.1| - 2.3e-14 53.1 0.1 9.8e-14 51.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|20091488|ref|NP_617563.1| - 0.0055 17.2 0.0 0.032 14.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091488|ref|NP_617563.1| - 0.15 11.8 0.0 0.77 9.4 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain DeoC PF01791.4 gi|20091489|ref|NP_617564.1| - 1.5e-45 155.3 0.0 1.8e-45 155.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PPDK_N PF01326.14 gi|20091490|ref|NP_617565.1| - 4.9e-92 308.4 0.0 2.4e-91 306.1 0.0 1.8 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|20091490|ref|NP_617565.1| - 2.7e-58 197.1 0.0 4.4e-58 196.4 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|20091490|ref|NP_617565.1| - 1.8e-24 85.0 0.4 4.6e-24 83.7 0.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain H_kinase_N PF12282.3 gi|20091490|ref|NP_617565.1| - 0.025 14.1 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Signal transduction histidine kinase PGK PF00162.14 gi|20091492|ref|NP_617567.1| - 1.1e-116 389.5 0.1 1.3e-116 389.3 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase TIM-br_sig_trns PF09370.5 gi|20091492|ref|NP_617567.1| - 0.05 12.6 0.0 0.087 11.8 0.0 1.3 1 0 0 1 1 1 0 TIM-barrel signal transduction protein DUF4277 PF14104.1 gi|20091493|ref|NP_617568.1| - 6e-45 152.1 0.0 1.2e-44 151.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20091493|ref|NP_617568.1| - 4e-14 52.6 3.7 3e-13 49.7 2.5 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.6 gi|20091493|ref|NP_617568.1| - 0.027 14.8 2.1 0.93 9.8 0.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1410) iPGM_N PF06415.8 gi|20091494|ref|NP_617569.1| - 4e-93 310.8 0.0 6.2e-93 310.2 0.0 1.3 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|20091494|ref|NP_617569.1| - 4.9e-88 294.7 0.0 5.7e-88 294.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|20091494|ref|NP_617569.1| - 1.5e-08 34.4 0.0 2.1e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|20091494|ref|NP_617569.1| - 0.0048 16.1 0.0 0.016 14.3 0.0 1.9 3 0 0 3 3 3 1 Sulfatase AP_endonuc_2 PF01261.19 gi|20091494|ref|NP_617569.1| - 0.0067 15.7 0.5 0.022 14.0 0.0 2.1 3 0 0 3 3 3 1 Xylose isomerase-like TIM barrel PglZ PF08665.7 gi|20091494|ref|NP_617569.1| - 0.072 12.7 0.2 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 PglZ domain DEAD PF00270.24 gi|20091495|ref|NP_617570.1| - 3.7e-24 85.1 0.0 8.5e-24 83.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|20091495|ref|NP_617570.1| - 1e-18 67.6 0.1 1.1e-17 64.4 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|20091495|ref|NP_617570.1| - 5.9e-13 48.4 0.0 4.7e-12 45.5 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain MC1 PF05854.6 gi|20091495|ref|NP_617570.1| - 0.082 12.8 0.1 0.23 11.4 0.1 1.7 1 0 0 1 1 1 0 Non-histone chromosomal protein MC1 NosD PF05048.8 gi|20091496|ref|NP_617571.1| - 2.5e-07 30.1 8.1 3.8e-07 29.4 5.6 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091496|ref|NP_617571.1| - 0.00011 22.0 15.2 0.0004 20.1 10.5 1.9 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.6 gi|20091496|ref|NP_617571.1| - 0.001 18.2 0.5 0.79 8.8 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectinesterase PF01095.14 gi|20091496|ref|NP_617571.1| - 0.039 12.5 0.1 0.074 11.6 0.0 1.4 1 0 0 1 1 1 0 Pectinesterase Pyrophosphatase PF00719.14 gi|161484935|ref|NP_617572.2| - 2e-57 193.0 0.0 2.3e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase FAD_binding_2 PF00890.19 gi|20091498|ref|NP_617573.1| - 1e-14 54.2 2.0 1.3e-05 24.2 0.3 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|20091498|ref|NP_617573.1| - 1.8e-14 53.4 0.1 1.3e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|20091498|ref|NP_617573.1| - 6.5e-14 51.5 2.2 7.1e-05 21.8 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|20091498|ref|NP_617573.1| - 1.5e-12 47.8 0.3 1.3e-05 25.2 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|20091498|ref|NP_617573.1| - 5.2e-11 41.6 0.1 3.5e-07 29.0 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|20091498|ref|NP_617573.1| - 2.1e-07 30.2 0.6 8.9e-06 24.9 0.1 2.3 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|20091498|ref|NP_617573.1| - 1.4e-06 27.5 0.1 0.00013 21.0 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|20091498|ref|NP_617573.1| - 2.9e-05 24.0 0.3 0.0001 22.2 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|20091498|ref|NP_617573.1| - 3e-05 23.2 0.1 0.006 15.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.1 gi|20091498|ref|NP_617573.1| - 0.00023 20.9 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|20091498|ref|NP_617573.1| - 0.0015 18.6 0.5 0.0057 16.7 0.3 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|20091498|ref|NP_617573.1| - 0.008 15.3 1.0 0.16 11.0 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HSDR_N PF04313.9 gi|20091499|ref|NP_617574.1| - 0.064 12.9 0.0 5.1 6.7 0.0 2.0 1 1 1 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) DDE_Tnp_1 PF01609.16 gi|20091500|ref|NP_617575.1| - 3.8e-17 62.5 0.1 7.2e-17 61.6 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|20091500|ref|NP_617575.1| - 0.00097 19.2 0.0 0.0028 17.8 0.0 1.8 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|20091501|ref|NP_617576.1| - 1.3e-28 99.4 6.1 2.9e-28 98.3 3.7 2.1 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20091501|ref|NP_617576.1| - 6.3e-19 68.3 0.4 1.3e-18 67.3 0.3 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20091501|ref|NP_617576.1| - 6.5e-17 61.2 0.0 2.1e-16 59.5 0.0 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|20091501|ref|NP_617576.1| - 0.016 15.3 0.1 0.61 10.3 0.0 2.8 2 0 0 2 2 2 0 Transposase DDE domain AhpC-TSA PF00578.16 gi|20091501|ref|NP_617576.1| - 0.023 14.3 0.4 0.053 13.2 0.3 1.5 1 0 0 1 1 1 0 AhpC/TSA family GIIM PF08388.6 gi|20091502|ref|NP_617577.1| - 1.1e-28 98.7 11.9 2.1e-28 97.9 7.7 1.9 2 0 0 2 2 2 1 Group II intron, maturase-specific domain RVT_1 PF00078.22 gi|20091502|ref|NP_617577.1| - 8.3e-23 80.8 0.1 2.7e-22 79.2 0.0 1.8 2 0 0 2 2 2 1 Reverse transcriptase (RNA-dependent DNA polymerase) U5_2-snRNA_bdg PF10597.4 gi|20091502|ref|NP_617577.1| - 0.0089 15.6 0.2 0.019 14.5 0.2 1.5 1 0 0 1 1 1 1 U5-snRNA binding site 2 of PrP8 DUF713 PF05218.9 gi|20091502|ref|NP_617577.1| - 0.02 14.6 0.3 0.038 13.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF713) Arg_repressor PF01316.16 gi|20091502|ref|NP_617577.1| - 0.022 14.2 0.3 0.045 13.2 0.2 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain DUF2116 PF09889.4 gi|20091503|ref|NP_617578.1| - 0.64 9.8 0.0 0.64 9.8 0.0 3.0 3 1 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) SdpI PF13630.1 gi|20091503|ref|NP_617578.1| - 0.98 9.1 12.5 1.1 9.0 0.8 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family UbiA PF01040.13 gi|20091504|ref|NP_617579.1| - 4e-10 39.3 5.9 4.3e-10 39.2 4.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Pribosyltran PF00156.22 gi|20091505|ref|NP_617580.1| - 2.1e-24 85.6 0.5 3.6e-24 84.8 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|20091505|ref|NP_617580.1| - 0.0013 17.9 0.1 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|20091505|ref|NP_617580.1| - 0.0031 16.8 0.0 0.02 14.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|20091505|ref|NP_617580.1| - 0.031 14.0 0.1 0.045 13.4 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain adh_short PF00106.20 gi|20091506|ref|NP_617581.1| - 5.4e-34 117.5 0.0 6.4e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|20091506|ref|NP_617581.1| - 4e-18 66.0 0.1 7.3e-18 65.2 0.1 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|20091506|ref|NP_617581.1| - 2.8e-13 49.9 0.0 3.9e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|20091506|ref|NP_617581.1| - 6.6e-06 25.7 0.1 8.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|20091506|ref|NP_617581.1| - 0.0055 15.6 0.1 0.0067 15.3 0.1 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|20091506|ref|NP_617581.1| - 0.013 14.2 0.1 0.019 13.6 0.1 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Shikimate_DH PF01488.15 gi|20091506|ref|NP_617581.1| - 0.016 15.3 2.4 0.032 14.3 1.6 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|20091506|ref|NP_617581.1| - 0.037 14.0 0.5 0.058 13.3 0.4 1.4 1 0 0 1 1 1 0 NADH(P)-binding DHHA1 PF02272.14 gi|20091506|ref|NP_617581.1| - 0.12 12.0 0.9 0.26 11.0 0.6 1.5 1 0 0 1 1 1 0 DHHA1 domain NAD_binding_7 PF13241.1 gi|20091506|ref|NP_617581.1| - 0.12 12.6 0.3 0.21 11.8 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding UPF0254 PF06787.6 gi|20091506|ref|NP_617581.1| - 0.17 11.4 3.0 0.37 10.3 0.0 2.2 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0254) adh_short PF00106.20 gi|20091507|ref|NP_617582.1| - 1.2e-36 126.1 0.0 1.4e-36 125.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|20091507|ref|NP_617582.1| - 1.8e-19 70.4 0.0 9.2e-19 68.1 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|20091507|ref|NP_617582.1| - 2.1e-15 56.8 0.0 2.7e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|20091507|ref|NP_617582.1| - 9.7e-05 21.9 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|20091507|ref|NP_617582.1| - 0.0044 15.9 0.1 0.0049 15.8 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|20091507|ref|NP_617582.1| - 0.006 16.6 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|20091507|ref|NP_617582.1| - 0.0084 14.8 0.1 0.011 14.4 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Saccharop_dh PF03435.13 gi|20091507|ref|NP_617582.1| - 0.038 12.9 0.0 0.05 12.5 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|20091507|ref|NP_617582.1| - 0.071 13.2 0.8 0.15 12.1 0.3 1.9 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DHquinase_I PF01487.10 gi|20091507|ref|NP_617582.1| - 0.11 12.1 0.4 0.16 11.5 0.3 1.2 1 0 0 1 1 1 0 Type I 3-dehydroquinase zf-UBP PF02148.14 gi|20091508|ref|NP_617583.1| - 9e-15 54.5 9.6 1.2e-14 54.1 6.7 1.2 1 0 0 1 1 1 1 Zn-finger in ubiquitin-hydrolases and other protein zf-C3HC4_3 PF13920.1 gi|20091508|ref|NP_617583.1| - 1.6 8.4 8.6 2.9 7.6 5.9 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF1670 PF07900.6 gi|20091509|ref|NP_617584.1| - 6.2e-98 326.3 4.8 7.2e-98 326.1 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20091509|ref|NP_617584.1| - 1.4e-06 27.7 0.1 0.63 9.7 0.0 4.1 3 1 1 4 4 4 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20091509|ref|NP_617584.1| - 7.5e-05 22.1 0.6 2.4 7.6 0.0 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20091509|ref|NP_617584.1| - 0.00024 20.8 0.2 0.37 10.6 0.0 2.9 1 1 2 3 3 3 2 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|20091509|ref|NP_617584.1| - 0.00033 20.8 0.1 1.7 8.9 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20091509|ref|NP_617584.1| - 0.00058 19.1 0.0 0.53 9.7 0.0 3.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|20091509|ref|NP_617584.1| - 0.0011 18.5 0.2 0.0084 15.6 0.2 2.3 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_5 PF01022.15 gi|20091509|ref|NP_617584.1| - 0.0011 18.6 0.2 0.14 11.8 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|20091509|ref|NP_617584.1| - 0.0047 17.0 0.1 12 6.1 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|20091509|ref|NP_617584.1| - 0.013 15.3 1.2 4.7 7.2 0.2 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|20091509|ref|NP_617584.1| - 0.02 14.5 0.2 10 5.8 0.0 3.0 3 0 0 3 3 3 0 HTH domain HTH_38 PF13936.1 gi|20091509|ref|NP_617584.1| - 0.027 14.0 1.2 2.5 7.7 0.1 3.3 3 1 1 4 4 4 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|20091509|ref|NP_617584.1| - 0.038 13.7 0.2 1.8 8.4 0.0 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_10 PF04967.7 gi|20091509|ref|NP_617584.1| - 0.064 12.8 0.1 0.84 9.2 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain KorB PF08535.5 gi|20091509|ref|NP_617584.1| - 0.075 13.1 0.0 0.27 11.4 0.0 2.0 1 0 0 1 1 1 0 KorB domain HTH_6 PF01418.12 gi|20091509|ref|NP_617584.1| - 0.12 12.1 0.1 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family DUF1670 PF07900.6 gi|20091510|ref|NP_617585.1| - 4.1e-89 297.5 0.3 5e-89 297.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_24 PF13412.1 gi|20091510|ref|NP_617585.1| - 0.0003 20.1 0.2 0.0021 17.4 0.2 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20091510|ref|NP_617585.1| - 0.0012 18.8 0.0 0.037 14.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20091510|ref|NP_617585.1| - 0.0019 17.8 0.0 9.3 6.0 0.0 3.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_29 PF13551.1 gi|20091510|ref|NP_617585.1| - 0.0019 18.2 0.1 0.35 11.0 0.0 3.0 1 1 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|20091510|ref|NP_617585.1| - 0.0022 17.5 0.8 0.0089 15.6 0.1 2.3 2 1 1 3 3 3 1 HTH domain HTH_17 PF12728.2 gi|20091510|ref|NP_617585.1| - 0.013 15.7 0.1 0.28 11.4 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20091510|ref|NP_617585.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|20091510|ref|NP_617585.1| - 0.017 14.7 0.1 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|20091510|ref|NP_617585.1| - 0.036 14.0 0.4 1.4 9.0 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091510|ref|NP_617585.1| - 0.036 13.5 1.5 8.4 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20091510|ref|NP_617585.1| - 0.055 13.0 1.3 4.1 7.0 0.0 3.5 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) MarR PF01047.17 gi|20091510|ref|NP_617585.1| - 0.062 13.0 0.1 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|20091510|ref|NP_617585.1| - 0.068 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|20091510|ref|NP_617585.1| - 0.16 11.5 2.3 0.18 11.3 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain ABC2_membrane PF01061.19 gi|20091511|ref|NP_617586.1| - 5.1e-29 100.9 26.9 5.1e-29 100.9 18.7 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|20091511|ref|NP_617586.1| - 3.2e-13 49.4 34.3 3.2e-13 49.4 23.7 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20091511|ref|NP_617586.1| - 1.1e-10 40.8 21.7 1.3e-10 40.6 15.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20091511|ref|NP_617586.1| - 0.00017 20.8 29.5 0.00024 20.3 20.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|20091512|ref|NP_617587.1| - 2.3e-33 115.3 0.0 4.3e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091512|ref|NP_617587.1| - 9.7e-17 61.8 0.0 1.6e-13 51.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|20091512|ref|NP_617587.1| - 1.1e-08 35.4 0.0 2.4e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|20091512|ref|NP_617587.1| - 5e-05 22.7 0.0 0.00011 21.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|20091512|ref|NP_617587.1| - 0.0001 21.4 0.0 0.027 13.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|20091512|ref|NP_617587.1| - 0.0002 20.6 0.0 0.00031 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|20091512|ref|NP_617587.1| - 0.00023 21.5 0.3 0.00029 21.2 0.2 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091512|ref|NP_617587.1| - 0.0021 17.3 0.0 0.015 14.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|20091512|ref|NP_617587.1| - 0.005 16.3 0.1 0.35 10.2 0.0 2.2 1 1 0 2 2 2 1 AAA-like domain MMR_HSR1 PF01926.18 gi|20091512|ref|NP_617587.1| - 0.0067 16.3 0.4 0.028 14.3 0.3 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|20091512|ref|NP_617587.1| - 0.016 15.3 0.1 0.065 13.3 0.1 2.1 1 1 1 2 2 2 0 AAA domain Rad17 PF03215.10 gi|20091512|ref|NP_617587.1| - 0.025 13.2 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|20091512|ref|NP_617587.1| - 0.059 13.3 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|20091512|ref|NP_617587.1| - 0.075 13.8 0.1 0.49 11.2 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|20091512|ref|NP_617587.1| - 0.081 12.4 0.0 0.31 10.5 0.0 1.9 1 1 1 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|20091512|ref|NP_617587.1| - 0.099 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PEPcase_2 PF14010.1 gi|229017561|ref|NP_617588.2| - 7.8e-148 492.8 0.0 8.8e-148 492.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Abhydrolase_6 PF12697.2 gi|20091514|ref|NP_617589.1| - 1.1e-27 97.3 0.0 1.5e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20091514|ref|NP_617589.1| - 2.4e-21 76.3 0.0 3e-16 59.6 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20091514|ref|NP_617589.1| - 1.2e-16 60.8 0.0 1.7e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|20091514|ref|NP_617589.1| - 0.0011 18.7 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|20091514|ref|NP_617589.1| - 0.0023 17.2 0.0 0.0049 16.1 0.0 1.6 2 0 0 2 2 2 1 Prolyl oligopeptidase family Ndr PF03096.9 gi|20091514|ref|NP_617589.1| - 0.0039 15.7 0.0 0.0065 14.9 0.0 1.3 1 0 0 1 1 1 1 Ndr family FSH1 PF03959.8 gi|20091514|ref|NP_617589.1| - 0.021 14.2 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Esterase PF00756.15 gi|20091514|ref|NP_617589.1| - 0.053 12.9 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Putative esterase Abhydrolase_4 PF08386.5 gi|20091514|ref|NP_617589.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Curto_V3 PF07436.6 gi|20091514|ref|NP_617589.1| - 0.12 12.4 0.1 3.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Curtovirus V3 protein Peptidase_U32 PF01136.14 gi|20091515|ref|NP_617590.1| - 4.4e-93 310.4 0.0 1.1e-74 250.3 0.0 2.4 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|20091515|ref|NP_617590.1| - 2.3e-31 108.3 1.0 2.3e-31 108.3 0.7 2.2 2 0 0 2 2 2 1 Collagenase OrfB_Zn_ribbon PF07282.6 gi|20091516|ref|NP_617591.1| - 5.6e-26 90.0 0.1 1.6e-25 88.5 0.1 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.14 gi|20091516|ref|NP_617591.1| - 0.0037 16.9 0.1 0.0089 15.7 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|20091516|ref|NP_617591.1| - 0.041 13.6 1.0 0.1 12.4 0.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|20091516|ref|NP_617591.1| - 0.052 13.2 6.3 0.51 10.0 2.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|20091516|ref|NP_617591.1| - 0.058 13.5 5.1 0.14 12.2 3.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|20091516|ref|NP_617591.1| - 0.085 12.3 1.4 2.5 7.6 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|20091516|ref|NP_617591.1| - 0.11 11.7 1.8 0.79 9.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20091516|ref|NP_617591.1| - 1.3 8.9 5.0 1.1 9.0 1.7 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain MatE PF01554.13 gi|20091518|ref|NP_617593.1| - 4.3e-36 123.9 29.2 2.8e-18 66.0 4.6 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|20091518|ref|NP_617593.1| - 6.6e-09 35.7 24.4 5e-08 32.8 8.5 4.8 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Tic20 PF09685.5 gi|20091518|ref|NP_617593.1| - 0.022 14.7 1.6 0.022 14.7 1.1 4.7 2 2 1 3 3 3 0 Tic20-like protein DUF2156 PF09924.4 gi|20091519|ref|NP_617594.1| - 2.7e-94 315.3 0.0 3.7e-94 314.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) UPF0104 PF03706.8 gi|20091519|ref|NP_617594.1| - 6.2e-18 65.1 27.8 6.2e-18 65.1 19.3 3.1 3 1 0 3 3 3 1 Uncharacterised protein family (UPF0104) GATase PF00117.23 gi|20091520|ref|NP_617595.1| - 6.2e-24 84.5 0.0 8.7e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|20091520|ref|NP_617595.1| - 1.9e-07 30.7 0.1 1.6e-06 27.7 0.0 2.2 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|20091520|ref|NP_617595.1| - 1.5e-05 24.6 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.11 gi|20091520|ref|NP_617595.1| - 4.2e-05 22.4 0.0 5.7e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.19 gi|20091520|ref|NP_617595.1| - 0.00047 19.6 0.0 0.00068 19.1 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|20091520|ref|NP_617595.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase ICMT PF04140.9 gi|20091522|ref|NP_617597.1| - 1.4e-15 57.2 1.4 1.4e-15 57.2 1.0 2.1 3 0 0 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.8 gi|20091522|ref|NP_617597.1| - 2.1e-12 47.0 3.0 5.3e-12 45.7 0.4 2.2 2 0 0 2 2 2 1 Phospholipid methyltransferase NnrU PF07298.6 gi|20091522|ref|NP_617597.1| - 0.029 13.7 6.2 0.09 12.1 4.3 1.7 1 1 0 1 1 1 0 NnrU protein DUF1295 PF06966.7 gi|20091522|ref|NP_617597.1| - 0.034 13.4 3.5 0.025 13.9 0.9 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1295) DUF1129 PF06570.6 gi|20091522|ref|NP_617597.1| - 0.12 11.7 8.6 0.057 12.7 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) DUF3007 PF11460.3 gi|20091522|ref|NP_617597.1| - 0.18 11.8 1.7 0.38 10.8 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) NfeD PF01957.13 gi|20091522|ref|NP_617597.1| - 1.2 9.2 5.3 11 6.1 0.1 2.9 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding DUF3149 PF11346.3 gi|20091522|ref|NP_617597.1| - 1.9 8.1 7.3 14 5.2 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3149) Flavodoxin_1 PF00258.20 gi|20091523|ref|NP_617598.1| - 7.1e-31 107.1 0.1 8.7e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|20091523|ref|NP_617598.1| - 3.7e-07 29.7 0.0 5.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|20091523|ref|NP_617598.1| - 5.5e-06 26.4 0.0 7.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|20091523|ref|NP_617598.1| - 0.00039 19.8 0.0 0.57 9.5 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin FMN_red PF03358.10 gi|20091523|ref|NP_617598.1| - 0.0089 15.5 0.0 0.028 13.9 0.0 1.7 2 1 0 2 2 2 1 NADPH-dependent FMN reductase DUF2023 PF09633.5 gi|20091524|ref|NP_617599.1| - 9.6e-46 153.8 1.0 1.2e-45 153.5 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2023) PLD_C PF12357.3 gi|20091524|ref|NP_617599.1| - 0.047 13.2 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D C terminal Glyco_hydro_79n PF03662.9 gi|20091524|ref|NP_617599.1| - 0.12 10.9 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain DUF2833 PF11090.3 gi|20091524|ref|NP_617599.1| - 0.16 12.1 1.4 12 6.1 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2833) DUF772 PF05598.6 gi|20091525|ref|NP_617600.1| - 1e-19 70.1 0.1 6e-19 67.7 0.0 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|20091525|ref|NP_617600.1| - 1.8e-08 34.1 0.6 2.6e-07 30.3 0.4 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|20091525|ref|NP_617600.1| - 0.0017 18.1 0.2 0.0073 16.0 0.0 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|20091525|ref|NP_617600.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.5 1 1 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|20091525|ref|NP_617600.1| - 0.088 12.8 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20091527|ref|NP_617602.1| - 2.4e-05 24.0 0.0 2.4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF2929 PF11151.3 gi|20091528|ref|NP_617603.1| - 0.047 13.7 4.5 2.9 8.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) SH PF01445.12 gi|20091528|ref|NP_617603.1| - 0.054 13.1 0.7 0.063 12.9 0.0 1.5 2 0 0 2 2 2 0 Viral small hydrophobic protein DUF2970 PF11174.3 gi|20091528|ref|NP_617603.1| - 0.26 10.8 0.1 0.26 10.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) Kelch_4 PF13418.1 gi|20091529|ref|NP_617604.1| - 0.00096 18.8 0.0 1.6 8.5 0.0 4.4 5 1 1 6 6 6 1 Galactose oxidase, central domain Kelch_3 PF13415.1 gi|20091529|ref|NP_617604.1| - 0.0072 16.4 0.6 3.6 7.8 0.1 3.8 4 0 0 4 4 4 1 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|20091529|ref|NP_617604.1| - 0.013 15.6 4.8 14 6.0 0.1 5.3 5 1 1 6 6 6 0 Kelch motif PKD PF00801.15 gi|20091530|ref|NP_617605.1| - 4.6e-34 115.9 22.0 8.5e-14 51.0 3.4 3.8 3 0 0 3 3 3 3 PKD domain DPPIV_N PF00930.16 gi|20091530|ref|NP_617605.1| - 4.5e-10 38.6 19.4 5.6e-05 21.8 0.9 6.3 4 2 2 6 6 6 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region Kelch_4 PF13418.1 gi|20091530|ref|NP_617605.1| - 2.4e-09 36.8 10.4 32 4.4 0.0 11.1 11 0 0 11 11 11 0 Galactose oxidase, central domain Big_3_4 PF13754.1 gi|20091530|ref|NP_617605.1| - 8.1e-05 22.8 27.0 0.017 15.4 3.8 4.1 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 3) DUF2606 PF10794.4 gi|20091530|ref|NP_617605.1| - 0.0037 16.6 2.0 16 4.9 0.0 4.4 4 0 0 4 4 4 1 Protein of unknown function (DUF2606) DNA_PPF PF02916.10 gi|20091530|ref|NP_617605.1| - 0.028 14.4 5.1 0.19 11.7 0.1 3.9 3 1 1 4 4 4 0 DNA polymerase processivity factor PKD PF00801.15 gi|20091531|ref|NP_617606.1| - 2.4e-14 52.8 2.3 3.3e-14 52.3 1.6 1.3 1 0 0 1 1 1 1 PKD domain Big_3_4 PF13754.1 gi|20091531|ref|NP_617606.1| - 0.0028 17.9 6.4 0.0051 17.1 4.4 1.6 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 3) Yip1 PF04893.12 gi|20091532|ref|NP_617607.1| - 7.2e-11 41.8 20.8 9.2e-11 41.5 14.2 1.3 1 1 0 1 1 1 1 Yip1 domain DUF3795 PF12675.2 gi|20091533|ref|NP_617608.1| - 1.3e-09 38.0 17.0 1.4e-08 34.7 11.8 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF3795) MTHFR_C PF12225.3 gi|20091533|ref|NP_617608.1| - 0.59 9.6 11.6 0.28 10.7 6.3 1.7 1 1 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal DUF2273 PF10031.4 gi|20091534|ref|NP_617609.1| - 0.025 14.1 2.1 0.04 13.5 1.5 1.3 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) DUF805 PF05656.9 gi|20091534|ref|NP_617609.1| - 0.081 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) TauE PF01925.14 gi|20091534|ref|NP_617609.1| - 0.087 12.2 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE XhlA PF10779.4 gi|20091534|ref|NP_617609.1| - 0.096 12.6 3.1 0.17 11.7 0.6 2.2 2 0 0 2 2 2 0 Haemolysin XhlA EIIBC-GUT_C PF07663.6 gi|20091534|ref|NP_617609.1| - 0.16 12.0 0.6 0.28 11.3 0.4 1.3 1 0 0 1 1 1 0 Sorbitol phosphotransferase enzyme II C-terminus Tubulin_2 PF13809.1 gi|20091535|ref|NP_617610.1| - 7.3e-06 25.1 1.3 2.3e-05 23.4 0.0 2.4 3 0 0 3 3 3 1 Tubulin like Tubulin PF00091.20 gi|20091535|ref|NP_617610.1| - 6.6e-05 22.8 0.0 0.00044 20.1 0.0 2.2 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Lectin_N PF03954.9 gi|20091535|ref|NP_617610.1| - 0.0022 17.3 1.7 0.39 10.1 0.2 2.9 3 0 0 3 3 3 2 Hepatic lectin, N-terminal domain DUF4140 PF13600.1 gi|20091535|ref|NP_617610.1| - 0.16 12.4 2.3 24 5.4 0.1 3.2 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) Myosin_tail_1 PF01576.14 gi|20091535|ref|NP_617610.1| - 0.84 7.2 18.9 0.0092 13.7 3.6 2.9 3 0 0 3 3 3 0 Myosin tail Seryl_tRNA_N PF02403.17 gi|20091535|ref|NP_617610.1| - 2.2 8.3 24.4 0.29 11.1 1.7 5.1 4 1 1 5 5 5 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|20091535|ref|NP_617610.1| - 2.2 8.5 9.4 0.44 10.8 1.1 3.5 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein ISG65-75 PF11727.3 gi|20091535|ref|NP_617610.1| - 9.6 5.1 11.3 0.56 9.2 0.1 3.4 2 1 1 3 3 3 0 Invariant surface glycoprotein AAA_11 PF13086.1 gi|20091536|ref|NP_617611.1| - 0.0026 17.3 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|20091536|ref|NP_617611.1| - 0.01 16.1 0.1 0.047 13.9 0.0 1.9 1 1 0 1 1 1 0 ABC transporter DUF2075 PF09848.4 gi|20091536|ref|NP_617611.1| - 0.015 14.2 0.0 0.031 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|20091536|ref|NP_617611.1| - 0.025 14.7 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|20091536|ref|NP_617611.1| - 0.031 13.7 0.1 0.08 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|20091536|ref|NP_617611.1| - 0.038 13.9 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|20091536|ref|NP_617611.1| - 0.055 13.1 8.9 0.071 12.7 2.4 3.0 1 1 2 3 3 3 0 Archaeal ATPase AAA_29 PF13555.1 gi|20091536|ref|NP_617611.1| - 0.074 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|20091536|ref|NP_617611.1| - 0.078 13.1 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|20091536|ref|NP_617611.1| - 0.11 12.4 2.0 0.66 9.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|20091536|ref|NP_617611.1| - 0.76 10.6 3.7 2.3 9.0 0.2 2.8 2 2 0 2 2 2 0 AAA domain YtzH PF14165.1 gi|20091537|ref|NP_617612.1| - 0.049 13.8 0.5 0.28 11.4 0.3 2.5 1 1 1 2 2 2 0 YtzH-like protein CBS PF00571.23 gi|20091538|ref|NP_617613.1| - 8.7e-28 95.8 0.9 6.8e-14 51.3 0.0 2.5 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|20091538|ref|NP_617613.1| - 2.2e-24 86.3 0.0 4.4e-24 85.2 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|20091538|ref|NP_617613.1| - 1.6e-10 41.2 0.0 3.1e-10 40.3 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|20091538|ref|NP_617613.1| - 0.0053 16.2 0.0 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|20091538|ref|NP_617613.1| - 0.051 12.7 0.0 0.43 9.7 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|20091538|ref|NP_617613.1| - 0.08 12.6 0.0 0.83 9.4 0.0 2.2 1 1 0 1 1 1 0 Alpha/beta hydrolase family Cys_Met_Meta_PP PF01053.15 gi|20091539|ref|NP_617614.1| - 1.1e-145 484.8 0.0 1.2e-145 484.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|20091539|ref|NP_617614.1| - 3.1e-11 42.9 0.0 4.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|20091539|ref|NP_617614.1| - 2.1e-06 26.9 0.0 3.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|20091539|ref|NP_617614.1| - 0.00065 18.5 0.0 0.0012 17.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|20091539|ref|NP_617614.1| - 0.021 13.5 0.0 0.03 13.0 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|20091539|ref|NP_617614.1| - 0.047 12.8 0.0 0.18 10.9 0.0 1.8 1 1 0 1 1 1 0 Beta-eliminating lyase NadA PF02445.11 gi|20091540|ref|NP_617615.1| - 1.6e-122 407.9 3.4 1.8e-122 407.7 2.4 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF643 PF04867.7 gi|20091540|ref|NP_617615.1| - 0.091 13.1 0.2 0.19 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF643) NifU_N PF01592.11 gi|20091541|ref|NP_617616.1| - 4.2e-49 165.7 0.1 4.6e-49 165.5 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Phos_pyr_kin PF08543.7 gi|20091541|ref|NP_617616.1| - 0.11 11.6 0.1 0.41 9.8 0.1 1.7 1 1 1 2 2 2 0 Phosphomethylpyrimidine kinase CO_deh_flav_C PF03450.12 gi|20091541|ref|NP_617616.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain Aminotran_5 PF00266.14 gi|20091542|ref|NP_617617.1| - 3.2e-92 309.1 0.0 3.8e-92 308.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|20091542|ref|NP_617617.1| - 1e-06 28.1 0.0 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|20091542|ref|NP_617617.1| - 0.00012 20.6 0.0 0.00019 19.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain DegT_DnrJ_EryC1 PF01041.12 gi|20091542|ref|NP_617617.1| - 0.00015 20.9 0.1 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_3 PF01381.17 gi|20091543|ref|NP_617618.1| - 0.0074 16.1 0.8 0.012 15.4 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix P22_Cro PF14549.1 gi|20091543|ref|NP_617618.1| - 0.017 14.8 0.2 0.088 12.5 0.0 2.0 1 1 1 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_1 PF00126.22 gi|20091543|ref|NP_617618.1| - 0.02 14.6 0.2 0.03 14.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|20091543|ref|NP_617618.1| - 0.022 14.4 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Cro PF09048.5 gi|20091543|ref|NP_617618.1| - 0.036 13.7 0.1 0.17 11.5 0.1 1.9 2 0 0 2 2 2 0 Cro HTH_38 PF13936.1 gi|20091543|ref|NP_617618.1| - 0.039 13.5 0.0 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PaREP1 PF05942.6 gi|20091543|ref|NP_617618.1| - 0.078 12.8 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family HTH_28 PF13518.1 gi|20091543|ref|NP_617618.1| - 0.1 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PALP PF00291.20 gi|20091544|ref|NP_617619.1| - 9.4e-64 215.5 1.1 1.1e-63 215.3 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|20091544|ref|NP_617619.1| - 0.0021 17.6 0.1 0.01 15.3 0.0 2.1 2 1 0 2 2 2 1 Zinc-binding dehydrogenase DFP PF04127.10 gi|20091544|ref|NP_617619.1| - 0.033 13.7 0.1 0.07 12.7 0.1 1.5 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF59 PF01883.14 gi|20091545|ref|NP_617620.1| - 1.7e-17 63.1 0.1 3.5e-17 62.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF59 Hexapep PF00132.19 gi|20091545|ref|NP_617620.1| - 3.6e-12 45.1 10.4 2.1e-07 30.1 1.8 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20091545|ref|NP_617620.1| - 3e-09 36.2 11.9 6.3e-05 22.4 2.0 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|20091545|ref|NP_617620.1| - 0.00085 19.5 0.0 0.0019 18.4 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal TMP-TENI PF02581.12 gi|20091546|ref|NP_617621.1| - 3.2e-63 212.0 0.6 4.2e-63 211.7 0.4 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|20091546|ref|NP_617621.1| - 0.00079 18.6 1.8 0.0053 15.9 1.3 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase Oxidored_FMN PF00724.15 gi|20091546|ref|NP_617621.1| - 0.0044 16.0 0.4 0.043 12.7 0.1 2.0 1 1 1 2 2 2 1 NADH:flavin oxidoreductase / NADH oxidase family PcrB PF01884.12 gi|20091546|ref|NP_617621.1| - 0.01 15.0 2.3 1.2 8.3 0.2 2.3 1 1 1 2 2 2 0 PcrB family Ribul_P_3_epim PF00834.14 gi|20091546|ref|NP_617621.1| - 0.012 14.7 0.3 0.034 13.2 0.1 1.9 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.16 gi|20091546|ref|NP_617621.1| - 0.039 13.2 2.3 0.28 10.4 1.6 2.3 1 1 0 1 1 1 0 Histidine biosynthesis protein HK PF02110.10 gi|20091547|ref|NP_617622.1| - 5.3e-82 274.6 3.2 6e-82 274.5 2.2 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|20091547|ref|NP_617622.1| - 2.2e-07 30.3 1.2 2.7e-07 30.0 0.8 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|20091547|ref|NP_617622.1| - 2.3e-06 27.0 0.6 3e-06 26.6 0.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.19 gi|20091547|ref|NP_617622.1| - 0.0043 16.2 0.4 0.0049 16.0 0.3 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PKD PF00801.15 gi|20091548|ref|NP_617623.1| - 1.3e-14 53.7 4.7 3.8e-14 52.1 3.2 1.9 1 0 0 1 1 1 1 PKD domain PQQ_2 PF13360.1 gi|20091548|ref|NP_617623.1| - 0.00095 18.6 2.0 0.022 14.2 0.8 2.7 1 1 1 2 2 2 2 PQQ-like domain SGL PF08450.7 gi|20091548|ref|NP_617623.1| - 0.013 14.8 0.6 0.23 10.7 0.4 2.5 1 1 0 1 1 1 0 SMP-30/Gluconolaconase/LRE-like region FAINT PF04385.10 gi|20091548|ref|NP_617623.1| - 0.016 15.0 4.9 0.2 11.4 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function, DUF529 PQQ_3 PF13570.1 gi|20091548|ref|NP_617623.1| - 0.24 11.7 4.6 12 6.2 0.2 4.6 5 0 0 5 5 5 0 PQQ-like domain MULE PF10551.4 gi|20091549|ref|NP_617624.1| - 6.6e-11 42.2 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|20091549|ref|NP_617624.1| - 0.00059 19.1 2.3 0.0023 17.1 1.6 1.8 1 1 0 1 1 1 1 Transposase IS66 family BDV_P24 PF06595.6 gi|20091549|ref|NP_617624.1| - 0.066 12.9 0.8 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20091549|ref|NP_617624.1| - 0.21 11.8 2.4 0.74 10.1 1.7 1.9 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.11 gi|20091549|ref|NP_617624.1| - 0.26 10.9 2.6 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|20091549|ref|NP_617624.1| - 0.28 10.5 2.8 1.3 8.4 0.4 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20091549|ref|NP_617624.1| - 0.3 10.3 2.3 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M3_N PF08439.5 gi|20091549|ref|NP_617624.1| - 2.2 8.4 6.7 0.31 11.1 1.0 2.4 3 0 0 3 3 3 0 Oligopeptidase F Orn_Arg_deC_N PF02784.11 gi|20091552|ref|NP_617627.1| - 2.4e-53 180.8 0.0 3.1e-53 180.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|20091552|ref|NP_617627.1| - 3.9e-17 62.0 0.0 5.9e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HTH_40 PF14493.1 gi|20091552|ref|NP_617627.1| - 0.13 12.4 0.2 0.3 11.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Transposase_20 PF02371.11 gi|20091553|ref|NP_617628.1| - 1e-30 105.6 0.0 2.6e-30 104.3 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|20091553|ref|NP_617628.1| - 2.5e-25 88.8 0.0 4.4e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Transposase 5_3_exonuc PF01367.15 gi|20091553|ref|NP_617628.1| - 0.066 13.4 1.5 13 6.0 0.0 3.5 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold Methyltransf_31 PF13847.1 gi|20091554|ref|NP_617629.1| - 1.7e-26 92.6 0.0 2.3e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091554|ref|NP_617629.1| - 4.7e-23 81.4 0.0 8.2e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091554|ref|NP_617629.1| - 1.1e-15 57.8 0.0 2.4e-15 56.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091554|ref|NP_617629.1| - 1.7e-14 53.8 0.0 2.1e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091554|ref|NP_617629.1| - 3.4e-14 53.3 0.0 5.7e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091554|ref|NP_617629.1| - 1.8e-13 50.7 0.0 7.3e-13 48.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091554|ref|NP_617629.1| - 1.1e-12 47.5 0.0 2.5e-12 46.4 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|20091554|ref|NP_617629.1| - 1.5e-09 37.4 0.0 2.8e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20091554|ref|NP_617629.1| - 1.4e-07 31.5 0.0 2.3e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|20091554|ref|NP_617629.1| - 1.8e-07 30.2 0.0 3.7e-07 29.1 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|20091554|ref|NP_617629.1| - 7.3e-07 28.4 0.0 1.8e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 Putative methyltransferase NodS PF05401.6 gi|20091554|ref|NP_617629.1| - 1.6e-06 27.6 0.0 2.3e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|20091554|ref|NP_617629.1| - 3.4e-06 26.7 0.0 5.1e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|20091554|ref|NP_617629.1| - 0.00017 21.1 0.0 0.00026 20.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|20091554|ref|NP_617629.1| - 0.0002 20.5 0.0 0.00027 20.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NAS PF03059.11 gi|20091554|ref|NP_617629.1| - 0.00021 20.5 0.0 0.00028 20.1 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein TehB PF03848.9 gi|20091554|ref|NP_617629.1| - 0.00026 20.2 0.0 0.00038 19.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.6 gi|20091554|ref|NP_617629.1| - 0.00098 18.6 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) N2227 PF07942.7 gi|20091554|ref|NP_617629.1| - 0.0047 15.9 0.1 0.043 12.7 0.0 2.0 1 1 1 2 2 2 1 N2227-like protein MetW PF07021.7 gi|20091554|ref|NP_617629.1| - 0.0067 15.8 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|20091554|ref|NP_617629.1| - 0.032 13.2 0.0 0.046 12.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) tRNA_U5-meth_tr PF05958.6 gi|20091554|ref|NP_617629.1| - 0.049 12.3 0.0 0.072 11.7 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.15 gi|20091554|ref|NP_617629.1| - 0.056 12.4 0.0 0.083 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|20091554|ref|NP_617629.1| - 0.074 12.7 0.0 0.24 11.0 0.0 1.8 1 1 0 2 2 2 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|20091554|ref|NP_617629.1| - 0.12 13.1 0.0 0.38 11.6 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain PAS_3 PF08447.6 gi|20091556|ref|NP_617631.1| - 6.3e-35 119.1 0.3 2.7e-18 65.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA_2 PF07568.7 gi|20091556|ref|NP_617631.1| - 3.1e-30 103.8 1.3 2.3e-29 101.0 0.8 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.1 gi|20091556|ref|NP_617631.1| - 3.3e-20 72.4 0.3 1.2e-10 41.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|20091556|ref|NP_617631.1| - 3.6e-10 39.5 0.3 2.4e-09 36.8 0.0 2.4 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|20091556|ref|NP_617631.1| - 1.3e-06 28.2 0.4 0.0014 18.5 0.0 2.8 2 1 0 2 2 2 2 PAS domain HWE_HK PF07536.9 gi|20091556|ref|NP_617631.1| - 0.00061 20.1 0.1 0.0022 18.3 0.0 2.0 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20091556|ref|NP_617631.1| - 0.0014 18.4 0.0 0.0033 17.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|20091556|ref|NP_617631.1| - 0.0061 16.3 0.1 2 8.2 0.0 2.7 2 1 0 2 2 2 2 PAS fold DDE_Tnp_IS1 PF03400.8 gi|20091557|ref|NP_617632.1| - 1.5e-08 34.7 0.1 1.7e-08 34.6 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20091558|ref|NP_617633.1| - 2.7e-06 26.8 0.0 5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20091558|ref|NP_617633.1| - 1.2e-05 24.7 0.0 2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20091558|ref|NP_617633.1| - 1.7e-05 24.7 0.1 2.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091558|ref|NP_617633.1| - 0.0011 19.0 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|20091558|ref|NP_617633.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|20091558|ref|NP_617633.1| - 0.011 15.2 0.0 0.034 13.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain zf-Mss51 PF13824.1 gi|20091558|ref|NP_617633.1| - 0.017 14.9 2.9 0.037 13.8 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_Tnp_1 PF01527.15 gi|20091558|ref|NP_617633.1| - 0.035 14.0 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 Transposase TCR_zetazeta PF11628.3 gi|20091558|ref|NP_617633.1| - 0.036 13.5 0.1 0.061 12.7 0.0 1.4 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain DUF2387 PF09526.5 gi|20091558|ref|NP_617633.1| - 0.075 12.9 0.7 0.16 11.9 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|20091558|ref|NP_617633.1| - 0.14 11.8 6.0 0.12 12.0 2.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain PolC_DP2 PF03833.8 gi|20091558|ref|NP_617633.1| - 0.14 9.7 0.3 0.16 9.6 0.2 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn_Tnp_IS1 PF03811.8 gi|20091558|ref|NP_617633.1| - 0.16 11.5 12.0 0.29 10.6 8.3 1.4 1 0 0 1 1 1 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|20091558|ref|NP_617633.1| - 0.17 11.7 8.8 0.28 11.0 6.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|20091558|ref|NP_617633.1| - 0.22 11.4 2.4 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20091558|ref|NP_617633.1| - 1.1 8.3 6.7 1.8 7.6 3.6 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com MULE PF10551.4 gi|20091559|ref|NP_617634.1| - 9.6e-13 48.1 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091559|ref|NP_617634.1| - 0.022 13.3 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091559|ref|NP_617634.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20091559|ref|NP_617634.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20091559|ref|NP_617634.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091559|ref|NP_617634.1| - 0.093 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091559|ref|NP_617634.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091559|ref|NP_617634.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger Hexapep PF00132.19 gi|20091560|ref|NP_617635.1| - 2.7e-10 39.2 13.8 8.4e-08 31.3 1.5 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20091560|ref|NP_617635.1| - 8.4e-06 25.2 8.8 0.0051 16.3 1.3 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase rve PF00665.21 gi|20091561|ref|NP_617636.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091561|ref|NP_617636.1| - 2e-05 24.0 0.0 5.1e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20091561|ref|NP_617636.1| - 0.00094 18.6 0.1 0.0023 17.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20091561|ref|NP_617636.1| - 0.0017 17.8 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20091561|ref|NP_617636.1| - 0.0049 16.4 0.3 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20091561|ref|NP_617636.1| - 0.0059 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|20091561|ref|NP_617636.1| - 0.013 15.0 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 HTH domain MerR_1 PF13411.1 gi|20091561|ref|NP_617636.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_5 PF01022.15 gi|20091561|ref|NP_617636.1| - 0.022 14.4 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|20091561|ref|NP_617636.1| - 0.028 13.9 0.0 0.075 12.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|20091561|ref|NP_617636.1| - 0.03 14.4 0.1 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix DUF2312 PF10073.4 gi|20091561|ref|NP_617636.1| - 0.043 13.1 0.0 2.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_28 PF13518.1 gi|20091561|ref|NP_617636.1| - 0.044 13.8 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|20091561|ref|NP_617636.1| - 0.046 13.5 0.2 0.9 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF746 PF05344.6 gi|20091561|ref|NP_617636.1| - 0.057 12.9 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_24 PF13412.1 gi|20091561|ref|NP_617636.1| - 0.083 12.2 0.8 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|20091561|ref|NP_617636.1| - 0.087 12.6 0.2 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix IstB_IS21 PF01695.12 gi|20091562|ref|NP_617637.1| - 3.9e-68 228.3 0.0 6e-68 227.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20091562|ref|NP_617637.1| - 6.3e-05 23.1 0.1 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20091562|ref|NP_617637.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|20091562|ref|NP_617637.1| - 0.00021 21.2 0.2 0.0028 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20091562|ref|NP_617637.1| - 0.00031 20.0 0.0 0.00046 19.4 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_17 PF13207.1 gi|20091562|ref|NP_617637.1| - 0.00056 20.7 1.6 0.0032 18.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20091562|ref|NP_617637.1| - 0.0011 18.3 0.1 0.0031 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|20091562|ref|NP_617637.1| - 0.0017 18.4 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|20091562|ref|NP_617637.1| - 0.0038 17.3 0.1 0.87 9.7 0.0 2.9 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20091562|ref|NP_617637.1| - 0.0069 15.4 0.1 0.011 14.8 0.0 1.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|20091562|ref|NP_617637.1| - 0.012 14.8 0.0 0.096 11.8 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|20091562|ref|NP_617637.1| - 0.018 14.9 0.5 0.061 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|20091562|ref|NP_617637.1| - 0.034 13.3 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20091562|ref|NP_617637.1| - 0.055 13.4 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20091562|ref|NP_617637.1| - 0.061 13.2 0.1 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20091562|ref|NP_617637.1| - 0.063 13.2 0.2 0.24 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|20091562|ref|NP_617637.1| - 0.072 12.5 3.1 0.19 11.1 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_19 PF13245.1 gi|20091562|ref|NP_617637.1| - 0.079 12.7 0.1 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|20091562|ref|NP_617637.1| - 0.12 11.1 0.0 0.24 10.1 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|20091562|ref|NP_617637.1| - 0.2 11.9 2.2 0.25 11.6 0.1 2.2 2 2 0 2 2 2 0 AAA domain DUF4277 PF14104.1 gi|20091563|ref|NP_617638.1| - 3.9e-41 139.8 0.0 9e-41 138.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20091563|ref|NP_617638.1| - 1.6e-10 40.9 0.1 2.5e-09 37.0 0.0 2.2 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20091563|ref|NP_617638.1| - 0.02 14.3 0.5 0.053 12.9 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 DUF4066 PF13278.1 gi|20091564|ref|NP_617639.1| - 1.8e-08 33.8 0.0 2.4e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase Nitroreductase PF00881.19 gi|20091565|ref|NP_617640.1| - 8.9e-29 100.4 0.0 1.3e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.22 gi|20091565|ref|NP_617640.1| - 2.5e-10 39.4 16.8 4.3e-08 32.4 3.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20091565|ref|NP_617640.1| - 1.3e-09 38.2 8.5 2.7e-09 37.2 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091565|ref|NP_617640.1| - 4.1e-09 36.5 6.9 7.5e-09 35.7 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091565|ref|NP_617640.1| - 9.6e-09 35.8 2.3 0.00061 20.4 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20091565|ref|NP_617640.1| - 1.5e-08 34.3 8.1 7e-08 32.1 6.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20091565|ref|NP_617640.1| - 1.6e-07 30.9 13.7 5.5e-07 29.1 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20091565|ref|NP_617640.1| - 6.9e-07 28.8 10.6 2.8e-05 23.7 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20091565|ref|NP_617640.1| - 1.2e-06 28.4 7.5 2.3e-06 27.5 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20091565|ref|NP_617640.1| - 5.7e-05 23.3 9.8 0.0046 17.2 7.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20091565|ref|NP_617640.1| - 0.0002 21.4 12.4 0.0045 17.1 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20091565|ref|NP_617640.1| - 0.00052 19.8 11.4 0.0017 18.1 7.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20091565|ref|NP_617640.1| - 0.00054 20.3 16.7 0.0041 17.5 3.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20091565|ref|NP_617640.1| - 0.0015 18.9 11.6 0.098 13.0 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Phage_cap_E PF03864.10 gi|20091565|ref|NP_617640.1| - 0.0053 15.7 0.0 0.0074 15.2 0.0 1.1 1 0 0 1 1 1 1 Phage major capsid protein E Fer4_15 PF13459.1 gi|20091565|ref|NP_617640.1| - 0.048 14.2 2.8 0.048 14.2 1.9 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20091565|ref|NP_617640.1| - 0.058 13.7 9.1 0.076 13.4 0.7 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain Abhydrolase_6 PF12697.2 gi|20091566|ref|NP_617641.1| - 2.9e-15 56.7 0.0 3.4e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20091566|ref|NP_617641.1| - 2.4e-14 53.4 0.0 1.5e-06 27.9 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20091566|ref|NP_617641.1| - 2.3e-07 30.6 0.0 4.7e-07 29.6 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|20091566|ref|NP_617641.1| - 0.0011 18.4 0.1 0.0015 18.0 0.1 1.2 1 0 0 1 1 1 1 Putative esterase LCM PF04072.9 gi|20091568|ref|NP_617643.1| - 3.3e-49 166.9 0.0 4.4e-49 166.5 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.18 gi|20091569|ref|NP_617644.1| - 6.3e-16 57.7 0.1 1.1e-15 56.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|20091569|ref|NP_617644.1| - 0.0003 21.3 0.0 0.00071 20.1 0.0 1.6 1 0 0 1 1 1 1 WHG domain FlaC_arch PF05377.6 gi|20091569|ref|NP_617644.1| - 0.6 10.0 3.0 1.1 9.2 1.1 2.2 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Zn_ribbon_recom PF13408.1 gi|20091570|ref|NP_617645.1| - 0.0041 17.3 1.3 0.0062 16.7 0.9 1.5 1 1 0 1 1 1 1 Recombinase zinc beta ribbon domain ADK_lid PF05191.9 gi|20091570|ref|NP_617645.1| - 0.0082 15.7 1.8 1.2 8.8 0.2 2.3 2 0 0 2 2 2 2 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20091570|ref|NP_617645.1| - 0.012 15.2 2.2 0.039 13.6 1.5 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|20091570|ref|NP_617645.1| - 0.05 13.5 0.2 3.9 7.5 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|20091570|ref|NP_617645.1| - 0.072 12.9 0.3 0.2 11.4 0.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|20091570|ref|NP_617645.1| - 0.072 12.6 0.3 2.1 7.9 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Arc_trans_TRASH PF08394.5 gi|20091570|ref|NP_617645.1| - 0.11 12.7 3.3 0.81 9.9 0.7 2.6 2 1 0 2 2 2 0 Archaeal TRASH domain zf-ISL3 PF14690.1 gi|20091570|ref|NP_617645.1| - 0.12 12.4 1.4 6.3 6.9 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.14 gi|20091570|ref|NP_617645.1| - 0.14 11.8 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|20091570|ref|NP_617645.1| - 0.36 10.5 2.4 8.1 6.2 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 PHD PF00628.24 gi|20091570|ref|NP_617645.1| - 0.37 10.5 5.2 1.3 8.7 3.2 1.9 1 1 0 1 1 1 0 PHD-finger zf-HYPF PF07503.7 gi|20091570|ref|NP_617645.1| - 0.56 9.6 2.8 3.8 7.0 0.2 2.4 2 0 0 2 2 2 0 HypF finger zf-CCHC_5 PF14787.1 gi|20091570|ref|NP_617645.1| - 7 6.2 8.8 2.3 7.7 0.6 3.0 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger zf-RanBP PF00641.13 gi|20091570|ref|NP_617645.1| - 7.6 5.7 6.7 7.9 5.6 1.0 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DDE_Tnp_IS66 PF03050.9 gi|20091571|ref|NP_617646.1| - 1.2e-68 231.3 0.0 1.8e-68 230.7 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|20091571|ref|NP_617646.1| - 6.1e-09 35.7 8.6 6.1e-09 35.7 6.0 2.3 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|20091571|ref|NP_617646.1| - 0.0013 18.1 7.6 0.071 12.6 0.3 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|20091571|ref|NP_617646.1| - 0.0055 16.4 1.2 0.023 14.4 0.8 2.1 1 0 0 1 1 1 1 Double zinc ribbon SlyX PF04102.7 gi|20091571|ref|NP_617646.1| - 0.016 15.5 0.2 0.016 15.5 0.1 2.8 3 1 0 3 3 3 0 SlyX zf-ribbon_3 PF13248.1 gi|20091571|ref|NP_617646.1| - 0.027 13.7 5.2 0.14 11.4 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DASH_Spc34 PF08657.5 gi|20091571|ref|NP_617646.1| - 0.04 13.5 0.3 0.04 13.5 0.2 2.0 2 1 0 2 2 2 0 DASH complex subunit Spc34 DDE_Tnp_IS240 PF13610.1 gi|20091571|ref|NP_617646.1| - 0.048 13.6 2.9 0.11 12.4 0.3 2.3 2 0 0 2 2 2 0 DDE domain zf-FPG_IleRS PF06827.9 gi|20091571|ref|NP_617646.1| - 0.11 12.1 2.7 9 6.0 0.0 2.7 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2034 PF10356.4 gi|20091571|ref|NP_617646.1| - 0.11 11.5 0.0 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) RBD-FIP PF09457.5 gi|20091571|ref|NP_617646.1| - 0.73 9.6 4.4 19 5.1 0.3 2.9 2 0 0 2 2 2 0 FIP domain UPF0547 PF10571.4 gi|20091571|ref|NP_617646.1| - 1.1 8.9 12.5 1.3 8.8 2.0 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.1 gi|20091571|ref|NP_617646.1| - 4.9 7.0 7.7 22 4.9 1.8 3.0 2 0 0 2 2 2 0 YhfH-like protein MULE PF10551.4 gi|20091572|ref|NP_617647.1| - 3.9e-13 49.3 0.1 9.8e-13 48.0 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091572|ref|NP_617647.1| - 0.009 14.6 0.0 0.02 13.4 0.0 1.5 1 1 0 1 1 1 1 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091572|ref|NP_617647.1| - 0.0095 15.7 0.1 0.024 14.4 0.0 1.7 1 1 0 1 1 1 1 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20091572|ref|NP_617647.1| - 0.017 14.7 0.5 0.02 14.5 0.3 1.3 1 0 0 1 1 1 0 Transposase BLYB PF05289.6 gi|20091572|ref|NP_617647.1| - 0.052 13.3 1.1 0.15 11.8 0.2 2.1 2 0 0 2 2 2 0 Borrelia hemolysin accessory protein DUF1874 PF08960.5 gi|20091572|ref|NP_617647.1| - 0.11 12.3 0.8 2.2 8.0 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF1874) Nitroreductase PF00881.19 gi|20091573|ref|NP_617648.1| - 0.007 16.2 0.0 0.0093 15.8 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family AgrD PF05931.6 gi|20091573|ref|NP_617648.1| - 9.9 5.8 6.5 37 4.0 0.1 2.4 2 0 0 2 2 2 0 Staphylococcal AgrD protein FAD_binding_3 PF01494.14 gi|20091574|ref|NP_617649.1| - 7.4e-13 48.2 0.0 1.9e-11 43.6 0.0 2.0 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|20091574|ref|NP_617649.1| - 2.1e-10 40.0 0.0 0.00025 20.0 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|20091574|ref|NP_617649.1| - 5.3e-06 25.5 0.0 0.035 13.0 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|20091574|ref|NP_617649.1| - 1.7e-05 24.7 0.0 3.1e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|20091574|ref|NP_617649.1| - 5.3e-05 23.1 0.0 0.00013 21.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|20091574|ref|NP_617649.1| - 9.6e-05 21.0 0.6 0.0023 16.4 0.0 2.3 2 1 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.9 gi|20091574|ref|NP_617649.1| - 0.00016 20.4 0.1 0.0028 16.3 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase Thi4 PF01946.12 gi|20091574|ref|NP_617649.1| - 0.00033 19.8 0.1 0.0015 17.6 0.0 2.1 2 1 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.1 gi|20091574|ref|NP_617649.1| - 0.0011 18.8 0.1 0.18 11.5 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding DUF4468 PF14730.1 gi|20091574|ref|NP_617649.1| - 0.0015 18.1 3.3 0.01 15.5 1.2 2.5 2 1 1 3 3 3 1 Domain of unknown function (DUF4468) with TBP-like fold FAD_binding_2 PF00890.19 gi|20091574|ref|NP_617649.1| - 0.0085 14.9 0.0 0.15 10.8 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|20091574|ref|NP_617649.1| - 0.018 15.1 0.3 0.11 12.5 0.2 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20091574|ref|NP_617649.1| - 0.02 15.2 0.0 2.2 8.7 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|20091574|ref|NP_617649.1| - 0.023 13.5 0.4 0.084 11.7 0.0 2.0 2 1 1 3 3 3 0 Glucose inhibited division protein A CoA_binding PF02629.14 gi|20091574|ref|NP_617649.1| - 0.055 13.9 0.0 0.17 12.4 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain Lum_binding PF00677.12 gi|20091574|ref|NP_617649.1| - 0.23 11.4 1.9 0.3 10.9 0.2 2.0 2 1 0 2 2 2 0 Lumazine binding domain ThiS PF02597.15 gi|20091575|ref|NP_617650.1| - 0.015 15.7 0.2 0.018 15.4 0.1 1.1 1 0 0 1 1 1 0 ThiS family E1-E2_ATPase PF00122.15 gi|20091575|ref|NP_617650.1| - 0.041 12.9 0.1 0.043 12.8 0.1 1.1 1 0 0 1 1 1 0 E1-E2 ATPase YonK PF09642.5 gi|20091575|ref|NP_617650.1| - 0.059 13.0 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 YonK protein DUF3795 PF12675.2 gi|20091576|ref|NP_617651.1| - 2.8e-18 65.8 13.9 3.8e-18 65.4 9.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) LIM PF00412.17 gi|20091577|ref|NP_617652.1| - 0.0076 16.2 1.1 0.014 15.4 0.7 1.4 1 0 0 1 1 1 1 LIM domain NMD3 PF04981.8 gi|20091577|ref|NP_617652.1| - 0.016 14.3 0.4 0.017 14.2 0.3 1.3 1 1 0 1 1 1 0 NMD3 family HTH_5 PF01022.15 gi|20091577|ref|NP_617652.1| - 0.025 14.2 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|20091577|ref|NP_617652.1| - 0.038 13.4 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|20091577|ref|NP_617652.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sgf11 PF08209.6 gi|20091577|ref|NP_617652.1| - 0.23 10.7 1.0 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.1 gi|20091577|ref|NP_617652.1| - 1.1 8.5 3.5 2 7.7 2.4 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Aldo_ket_red PF00248.16 gi|161484934|ref|NP_617654.2| - 2.4e-45 154.5 0.0 3.2e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|161484934|ref|NP_617654.2| - 1.5e-12 47.6 8.2 3.2e-12 46.6 5.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|161484934|ref|NP_617654.2| - 4.7e-10 39.5 9.4 9.2e-10 38.6 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|161484934|ref|NP_617654.2| - 4e-08 33.5 1.0 0.00058 20.2 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|161484934|ref|NP_617654.2| - 8.2e-08 32.1 8.0 1.6e-07 31.2 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|161484934|ref|NP_617654.2| - 5.7e-05 22.8 21.6 0.00047 19.9 8.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|161484934|ref|NP_617654.2| - 0.00041 19.9 4.0 0.0013 18.3 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|161484934|ref|NP_617654.2| - 0.0005 20.7 5.8 0.054 14.2 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|161484934|ref|NP_617654.2| - 0.00076 18.9 2.7 0.00076 18.9 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|161484934|ref|NP_617654.2| - 0.0031 17.3 9.6 0.21 11.4 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|161484934|ref|NP_617654.2| - 0.02 15.2 12.1 0.11 12.8 8.6 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|161484934|ref|NP_617654.2| - 0.041 14.4 4.5 0.041 14.4 3.1 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|161484934|ref|NP_617654.2| - 0.064 13.6 14.6 0.15 12.4 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|161484934|ref|NP_617654.2| - 0.08 13.3 0.5 0.08 13.3 0.3 2.6 2 1 0 2 2 1 0 4Fe-4S single cluster domain PA_decarbox PF05870.6 gi|161484934|ref|NP_617654.2| - 0.11 11.9 0.1 2.1 7.7 0.0 2.4 2 0 0 2 2 2 0 Phenolic acid decarboxylase (PAD) Fer4_15 PF13459.1 gi|161484934|ref|NP_617654.2| - 0.2 12.2 6.8 0.36 11.4 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|161484934|ref|NP_617654.2| - 0.33 10.9 15.3 0.096 12.6 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|161484934|ref|NP_617654.2| - 9.6 6.2 14.3 0.13 12.1 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HisKA_2 PF07568.7 gi|20091580|ref|NP_617655.1| - 3.1e-32 110.2 1.1 7.5e-32 109.0 0.8 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|20091580|ref|NP_617655.1| - 4.2e-20 72.0 0.0 1.9e-17 63.5 0.0 3.2 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|20091580|ref|NP_617655.1| - 1.7e-14 53.7 0.1 1.2e-06 28.4 0.1 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|20091580|ref|NP_617655.1| - 2.2e-11 43.4 0.2 5.3e-11 42.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|20091580|ref|NP_617655.1| - 5.2e-09 35.8 0.0 1.6e-08 34.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|20091580|ref|NP_617655.1| - 5.3e-08 32.4 0.0 1e-05 25.1 0.0 2.9 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|20091580|ref|NP_617655.1| - 0.0057 16.4 0.2 0.017 14.8 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20091580|ref|NP_617655.1| - 0.009 16.4 0.1 0.021 15.2 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase CCAP PF11105.3 gi|20091580|ref|NP_617655.1| - 0.057 13.1 0.6 2 8.1 0.8 2.4 1 1 1 2 2 2 0 Arthropod cardioacceleratory peptide 2a BpuSI_N PF15516.1 gi|20091580|ref|NP_617655.1| - 0.14 11.8 0.6 3.3 7.3 0.2 2.2 2 0 0 2 2 2 0 BpuSI N-terminal domain MULE PF10551.4 gi|20091581|ref|NP_617656.1| - 9.2e-13 48.1 0.1 2.1e-12 47.0 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain LOH1CR12 PF10158.4 gi|20091581|ref|NP_617656.1| - 0.019 14.7 0.1 0.052 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein Transposase_mut PF00872.13 gi|20091581|ref|NP_617656.1| - 0.02 13.4 0.0 0.031 12.8 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_ISL3 PF01610.12 gi|20091581|ref|NP_617656.1| - 0.037 13.6 0.5 0.052 13.1 0.3 1.3 1 0 0 1 1 1 0 Transposase C1_1 PF00130.17 gi|20091581|ref|NP_617656.1| - 0.038 13.7 1.0 0.11 12.2 0.7 1.6 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) ADK_lid PF05191.9 gi|20091581|ref|NP_617656.1| - 0.11 12.1 2.4 4.9 6.8 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20091581|ref|NP_617656.1| - 2.9 8.2 10.8 0.25 11.6 2.7 2.9 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091581|ref|NP_617656.1| - 9.2 6.0 7.5 3.5 7.3 2.5 2.3 2 1 0 2 2 2 0 PHD-finger LCM PF04072.9 gi|20091583|ref|NP_617658.1| - 1e-31 109.9 0.0 1.4e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.18 gi|20091584|ref|NP_617659.1| - 2.7e-16 58.9 0.1 5.8e-16 57.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Cas_NE0113 PF09623.5 gi|20091584|ref|NP_617659.1| - 0.006 16.0 0.2 0.32 10.4 0.1 2.2 2 0 0 2 2 2 1 CRISPR-associated protein NE0113 (Cas_NE0113) HTH_Tnp_1_2 PF13022.1 gi|20091584|ref|NP_617659.1| - 0.0083 15.9 0.3 0.018 14.8 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase DUF3578 PF12102.3 gi|20091584|ref|NP_617659.1| - 0.017 14.7 0.6 0.11 12.1 0.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3578) Phage_NinH PF06322.6 gi|20091584|ref|NP_617659.1| - 0.029 13.9 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein ATP-cone PF03477.11 gi|20091584|ref|NP_617659.1| - 0.33 11.4 3.3 3.2 8.2 0.1 3.2 3 1 1 4 4 4 0 ATP cone domain Transposase_20 PF02371.11 gi|20091585|ref|NP_617660.1| - 1e-30 105.6 0.0 2.6e-30 104.3 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|20091585|ref|NP_617660.1| - 5.7e-26 90.9 0.0 9.9e-26 90.1 0.0 1.4 1 0 0 1 1 1 1 Transposase 5_3_exonuc PF01367.15 gi|20091585|ref|NP_617660.1| - 0.067 13.4 1.5 13 6.0 0.0 3.5 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold LCM PF04072.9 gi|20091586|ref|NP_617661.1| - 1.6e-48 164.7 0.0 2e-48 164.4 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.18 gi|20091587|ref|NP_617662.1| - 4.7e-17 61.3 0.2 4.7e-17 61.3 0.1 2.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family Asp_Glu_race PF01177.17 gi|20091587|ref|NP_617662.1| - 0.036 13.9 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase LCM PF04072.9 gi|20091588|ref|NP_617663.1| - 2.5e-33 115.1 0.0 3.7e-33 114.6 0.0 1.3 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.18 gi|20091589|ref|NP_617664.1| - 1.7e-14 53.1 0.1 3.3e-14 52.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family FlgM PF04316.8 gi|20091589|ref|NP_617664.1| - 0.0066 16.3 0.0 0.018 14.9 0.0 1.8 1 0 0 1 1 1 1 Anti-sigma-28 factor, FlgM HTH_40 PF14493.1 gi|20091589|ref|NP_617664.1| - 0.016 15.3 0.0 3.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20091589|ref|NP_617664.1| - 0.021 14.4 0.0 0.054 13.1 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein DUF3795 PF12675.2 gi|20091591|ref|NP_617666.1| - 3.5e-20 71.9 7.0 4.8e-20 71.5 4.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) DDE_Tnp_1_6 PF13751.1 gi|20091592|ref|NP_617667.1| - 7.2e-27 93.8 9.2 7.2e-27 93.8 6.3 2.4 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|20091592|ref|NP_617667.1| - 2.2e-16 59.5 0.0 1e-15 57.3 0.0 2.2 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|20091592|ref|NP_617667.1| - 5.8e-12 45.6 1.6 5.8e-12 45.6 1.1 2.1 1 1 1 2 2 2 1 Transposase DDE domain Ribosomal_L32p PF01783.18 gi|20091592|ref|NP_617667.1| - 0.096 12.8 0.1 0.096 12.8 0.1 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF4404 PF14357.1 gi|20091592|ref|NP_617667.1| - 1.7 9.1 4.1 1.8 9.0 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4404) Transposase_mut PF00872.13 gi|20091593|ref|NP_617668.1| - 8.4e-09 34.4 0.4 9.6e-09 34.2 0.3 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MarR PF01047.17 gi|20091594|ref|NP_617669.1| - 1.9e-10 40.2 0.1 1.1e-09 37.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|20091594|ref|NP_617669.1| - 3.9e-10 39.8 0.1 1.9e-09 37.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20091594|ref|NP_617669.1| - 2.3e-08 33.5 0.0 6.3e-08 32.1 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|20091594|ref|NP_617669.1| - 0.00012 22.0 0.0 0.00022 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|20091594|ref|NP_617669.1| - 0.00014 21.5 0.1 0.00073 19.2 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4364 PF14277.1 gi|20091594|ref|NP_617669.1| - 0.003 17.2 0.2 0.0048 16.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.12 gi|20091594|ref|NP_617669.1| - 0.014 15.0 0.0 0.027 14.0 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_40 PF14493.1 gi|20091594|ref|NP_617669.1| - 0.031 14.5 0.7 0.22 11.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20091594|ref|NP_617669.1| - 0.057 13.2 0.1 0.38 10.5 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|20091594|ref|NP_617669.1| - 0.074 12.9 0.1 0.15 11.9 0.0 1.7 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Peripla_BP_2 PF01497.13 gi|20091595|ref|NP_617670.1| - 1.3e-63 214.3 0.5 1.6e-63 214.0 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_2 PF00891.13 gi|20091596|ref|NP_617671.1| - 1.2e-18 67.1 0.0 1.7e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|20091596|ref|NP_617671.1| - 4.9e-10 39.9 0.0 1e-09 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091596|ref|NP_617671.1| - 3.2e-07 30.7 0.0 6.2e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091596|ref|NP_617671.1| - 6.3e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20091596|ref|NP_617671.1| - 2.1e-05 23.9 0.0 8.7e-05 21.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20091596|ref|NP_617671.1| - 0.00062 19.7 0.0 0.0024 17.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|20091596|ref|NP_617671.1| - 0.0016 17.6 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|20091596|ref|NP_617671.1| - 0.0062 16.0 0.0 0.0094 15.4 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_31 PF13847.1 gi|20091596|ref|NP_617671.1| - 0.0062 16.1 0.0 0.017 14.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091596|ref|NP_617671.1| - 0.038 14.4 0.0 0.08 13.4 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Bin3 PF06859.7 gi|20091596|ref|NP_617671.1| - 0.075 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) FecCD PF01032.13 gi|20091597|ref|NP_617672.1| - 3e-45 154.3 14.2 3.7e-45 154.0 9.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC2_membrane_5 PF13346.1 gi|20091597|ref|NP_617672.1| - 3.5 6.8 16.0 9.8 5.4 7.1 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein FecCD PF01032.13 gi|20091598|ref|NP_617673.1| - 3.9e-29 101.4 14.7 4.3e-29 101.3 10.2 1.0 1 0 0 1 1 1 1 FecCD transport family DUF2207 PF09972.4 gi|20091598|ref|NP_617673.1| - 9 4.7 5.9 11 4.4 4.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.22 gi|20091599|ref|NP_617674.1| - 1.3e-31 109.7 0.0 1.8e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091599|ref|NP_617674.1| - 2.5e-10 40.7 0.1 3.9e-05 23.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|20091599|ref|NP_617674.1| - 3.8e-09 37.1 0.0 4.1e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091599|ref|NP_617674.1| - 3.5e-08 32.9 0.1 1e-07 31.3 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20091599|ref|NP_617674.1| - 2.3e-06 27.0 0.0 5.1e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20091599|ref|NP_617674.1| - 6.4e-06 26.3 0.7 5.3e-05 23.3 0.5 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|20091599|ref|NP_617674.1| - 3.6e-05 22.5 0.6 0.36 9.3 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|20091599|ref|NP_617674.1| - 0.00011 21.4 0.0 0.017 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|20091599|ref|NP_617674.1| - 0.0028 17.5 0.1 0.03 14.2 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|20091599|ref|NP_617674.1| - 0.0029 17.6 0.3 0.0067 16.4 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|20091599|ref|NP_617674.1| - 0.0096 14.8 0.7 0.068 12.0 0.0 2.0 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.9 gi|20091599|ref|NP_617674.1| - 0.01 15.5 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|20091599|ref|NP_617674.1| - 0.022 15.5 0.5 0.056 14.2 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|20091599|ref|NP_617674.1| - 0.025 14.4 0.0 0.23 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|20091599|ref|NP_617674.1| - 0.026 13.3 0.1 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|20091599|ref|NP_617674.1| - 0.027 14.2 0.0 0.21 11.3 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|20091599|ref|NP_617674.1| - 0.031 13.8 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|20091599|ref|NP_617674.1| - 0.035 13.2 0.0 0.11 11.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|20091599|ref|NP_617674.1| - 0.048 12.8 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|20091599|ref|NP_617674.1| - 0.077 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain MMR_HSR1 PF01926.18 gi|20091599|ref|NP_617674.1| - 0.08 12.9 0.2 0.11 12.4 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|20091599|ref|NP_617674.1| - 0.082 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|20091599|ref|NP_617674.1| - 0.083 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|20091599|ref|NP_617674.1| - 0.091 12.9 0.1 0.59 10.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|20091599|ref|NP_617674.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|20091599|ref|NP_617674.1| - 0.15 10.4 0.1 0.82 8.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Peripla_BP_2 PF01497.13 gi|20091600|ref|NP_617675.1| - 6.7e-24 84.3 0.0 9.3e-24 83.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF498 PF04430.9 gi|20091600|ref|NP_617675.1| - 0.0022 17.5 0.1 11 5.6 0.0 3.6 1 1 2 3 3 3 3 Protein of unknown function (DUF498/DUF598) Rer1 PF03248.8 gi|20091601|ref|NP_617676.1| - 0.14 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Rer1 family Sec61_beta PF03911.11 gi|20091601|ref|NP_617676.1| - 0.43 10.4 3.1 0.78 9.5 2.1 1.4 1 0 0 1 1 1 0 Sec61beta family Methyltransf_11 PF08241.7 gi|20091602|ref|NP_617677.1| - 8e-17 61.5 0.0 1.2e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091602|ref|NP_617677.1| - 2.3e-16 59.7 0.0 2.9e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091602|ref|NP_617677.1| - 5.5e-14 51.8 0.0 1.3e-13 50.5 0.0 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|20091602|ref|NP_617677.1| - 6.8e-11 42.7 0.0 1e-10 42.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091602|ref|NP_617677.1| - 9.4e-07 29.1 0.0 2.3e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091602|ref|NP_617677.1| - 1.8e-06 27.7 0.0 6.8e-06 25.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20091602|ref|NP_617677.1| - 3.4e-06 26.5 0.0 5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|20091602|ref|NP_617677.1| - 1.8e-05 25.0 0.0 3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20091602|ref|NP_617677.1| - 0.0004 19.9 0.0 0.00056 19.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.12 gi|20091602|ref|NP_617677.1| - 0.001 18.0 0.0 0.0012 17.8 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_8 PF05148.10 gi|20091602|ref|NP_617677.1| - 0.0012 18.5 0.0 0.0043 16.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.9 gi|20091602|ref|NP_617677.1| - 0.0015 17.7 0.0 0.002 17.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.14 gi|20091602|ref|NP_617677.1| - 0.0035 17.3 0.0 0.0064 16.4 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.15 gi|20091602|ref|NP_617677.1| - 0.0037 16.4 0.0 0.0085 15.1 0.0 1.7 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|20091602|ref|NP_617677.1| - 0.0057 16.6 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|20091602|ref|NP_617677.1| - 0.048 13.1 0.0 0.33 10.4 0.0 2.0 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|20091602|ref|NP_617677.1| - 0.076 12.0 0.0 0.19 10.7 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase CbiA PF01656.18 gi|20091603|ref|NP_617678.1| - 4.3e-21 75.2 0.0 6.8e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|20091603|ref|NP_617678.1| - 8.9e-09 35.4 0.0 6.3e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|20091603|ref|NP_617678.1| - 1.9e-06 27.8 0.3 9.6e-06 25.5 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF87 APS_kinase PF01583.15 gi|20091603|ref|NP_617678.1| - 2.2e-06 27.4 0.0 3.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|20091603|ref|NP_617678.1| - 4.3e-06 27.5 0.0 7e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|20091603|ref|NP_617678.1| - 5.8e-06 25.5 0.1 1.7e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|20091603|ref|NP_617678.1| - 6.4e-06 25.4 0.2 1.4e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|20091603|ref|NP_617678.1| - 1.6e-05 24.2 0.7 0.00025 20.3 0.0 2.5 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|20091603|ref|NP_617678.1| - 2.8e-05 23.6 0.0 5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|20091603|ref|NP_617678.1| - 3.2e-05 23.6 0.3 0.00041 20.0 0.0 2.5 2 1 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|20091603|ref|NP_617678.1| - 3.8e-05 23.2 0.0 0.0014 18.1 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|20091603|ref|NP_617678.1| - 6.8e-05 22.2 0.0 0.00021 20.6 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|20091603|ref|NP_617678.1| - 9.9e-05 21.8 0.0 0.00047 19.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|20091603|ref|NP_617678.1| - 0.00016 21.1 0.1 0.017 14.6 0.0 2.4 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|20091603|ref|NP_617678.1| - 0.00028 20.3 0.0 0.029 13.8 0.0 2.9 3 1 1 4 4 3 1 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|20091603|ref|NP_617678.1| - 0.00035 20.8 1.0 0.003 17.8 0.7 2.2 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|20091603|ref|NP_617678.1| - 0.00065 19.1 0.0 0.0019 17.6 0.0 1.7 2 0 0 2 2 2 1 YhjQ protein MMR_HSR1 PF01926.18 gi|20091603|ref|NP_617678.1| - 0.0011 18.9 0.3 0.049 13.5 0.2 2.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|20091603|ref|NP_617678.1| - 0.0012 17.7 0.0 0.0025 16.6 0.0 1.5 1 0 0 1 1 1 1 ArgK protein ABC_tran PF00005.22 gi|20091603|ref|NP_617678.1| - 0.0013 19.0 0.2 0.0021 18.3 0.1 1.6 1 1 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|20091603|ref|NP_617678.1| - 0.0014 19.1 0.2 0.79 10.2 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein TrkA_N PF02254.13 gi|20091603|ref|NP_617678.1| - 0.0017 18.3 0.2 0.15 12.0 0.0 3.0 2 1 1 3 3 3 1 TrkA-N domain IstB_IS21 PF01695.12 gi|20091603|ref|NP_617678.1| - 0.0019 17.6 0.0 0.0043 16.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|20091603|ref|NP_617678.1| - 0.0024 17.4 0.0 0.013 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20091603|ref|NP_617678.1| - 0.0046 17.0 0.0 0.14 12.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20091603|ref|NP_617678.1| - 0.01 15.7 0.0 0.069 13.1 0.0 2.1 2 1 0 3 3 3 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|20091603|ref|NP_617678.1| - 0.012 15.0 0.0 0.042 13.2 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|20091603|ref|NP_617678.1| - 0.012 14.7 0.1 0.025 13.7 0.1 1.6 1 1 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|20091603|ref|NP_617678.1| - 0.014 14.8 0.1 0.036 13.5 0.1 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family G-alpha PF00503.15 gi|20091603|ref|NP_617678.1| - 0.014 14.0 0.1 0.13 10.9 0.0 1.9 2 0 0 2 2 2 0 G-protein alpha subunit TrwB_AAD_bind PF10412.4 gi|20091603|ref|NP_617678.1| - 0.018 13.6 0.2 0.054 12.1 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain KaiC PF06745.8 gi|20091603|ref|NP_617678.1| - 0.024 13.7 0.0 0.071 12.2 0.0 1.7 2 0 0 2 2 2 0 KaiC AAA_29 PF13555.1 gi|20091603|ref|NP_617678.1| - 0.033 13.7 0.3 0.11 12.0 0.1 1.9 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|20091603|ref|NP_617678.1| - 0.033 14.0 0.0 0.085 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|20091603|ref|NP_617678.1| - 0.037 13.5 0.1 0.29 10.6 0.0 2.3 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.1 gi|20091603|ref|NP_617678.1| - 0.04 13.7 0.0 0.087 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|20091603|ref|NP_617678.1| - 0.048 13.3 0.4 0.55 9.9 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|20091603|ref|NP_617678.1| - 0.061 12.9 0.2 0.19 11.3 0.0 1.8 3 0 0 3 3 1 0 AAA domain RNA_helicase PF00910.17 gi|20091603|ref|NP_617678.1| - 0.062 13.4 0.0 0.2 11.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_19 PF13245.1 gi|20091603|ref|NP_617678.1| - 0.064 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|20091603|ref|NP_617678.1| - 0.085 11.6 0.1 0.24 10.1 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.9 gi|20091603|ref|NP_617678.1| - 0.086 12.5 0.1 0.32 10.7 0.0 2.0 3 0 0 3 3 1 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|20091603|ref|NP_617678.1| - 0.089 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein KAP_NTPase PF07693.9 gi|20091603|ref|NP_617678.1| - 0.11 11.4 0.0 0.22 10.4 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain Torsin PF06309.6 gi|20091603|ref|NP_617678.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Torsin Methyltransf_31 PF13847.1 gi|20091604|ref|NP_617679.1| - 2e-21 76.2 0.0 2.4e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091604|ref|NP_617679.1| - 3.9e-17 62.8 0.0 5.4e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091604|ref|NP_617679.1| - 1.3e-16 60.7 0.0 2e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091604|ref|NP_617679.1| - 4.5e-15 55.3 0.0 5.6e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|20091604|ref|NP_617679.1| - 3e-14 53.0 0.0 3.8e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091604|ref|NP_617679.1| - 6e-11 42.7 0.0 8.4e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091604|ref|NP_617679.1| - 6.6e-10 39.2 0.0 1e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20091604|ref|NP_617679.1| - 1.4e-08 34.5 0.0 1.6e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|20091604|ref|NP_617679.1| - 2.5e-08 33.4 0.0 8.1e-08 31.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20091604|ref|NP_617679.1| - 1.1e-07 31.8 0.0 3.8e-07 30.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|20091604|ref|NP_617679.1| - 3.7e-07 29.4 0.0 4.8e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase FtsJ PF01728.14 gi|20091604|ref|NP_617679.1| - 6.2e-07 29.5 0.0 8.5e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.8 gi|20091604|ref|NP_617679.1| - 7.8e-07 28.4 0.0 1.1e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|20091604|ref|NP_617679.1| - 0.00011 21.3 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|20091604|ref|NP_617679.1| - 0.00014 21.5 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein RrnaAD PF00398.15 gi|20091604|ref|NP_617679.1| - 0.00017 20.7 0.0 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|20091604|ref|NP_617679.1| - 0.00026 20.0 0.0 0.00035 19.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|20091604|ref|NP_617679.1| - 0.00052 19.1 0.0 0.0033 16.5 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|20091604|ref|NP_617679.1| - 0.0013 18.4 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20091604|ref|NP_617679.1| - 0.0037 16.4 0.0 0.0047 16.1 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB GCD14 PF08704.5 gi|20091604|ref|NP_617679.1| - 0.0038 16.7 0.0 0.0049 16.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.12 gi|20091604|ref|NP_617679.1| - 0.0069 15.3 0.0 0.0086 15.0 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_16 PF10294.4 gi|20091604|ref|NP_617679.1| - 0.007 15.8 0.0 0.0076 15.7 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_9 PF08003.6 gi|20091604|ref|NP_617679.1| - 0.0088 14.7 0.0 0.012 14.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|20091604|ref|NP_617679.1| - 0.015 14.6 0.1 0.037 13.3 0.0 1.6 1 1 1 2 2 2 0 Methionine biosynthesis protein MetW Nol1_Nop2_Fmu PF01189.12 gi|20091604|ref|NP_617679.1| - 0.019 14.3 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 NOL1/NOP2/sun family NNMT_PNMT_TEMT PF01234.12 gi|20091604|ref|NP_617679.1| - 0.042 12.8 0.0 0.15 10.9 0.0 1.8 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family DUF43 PF01861.11 gi|20091604|ref|NP_617679.1| - 0.1 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF43 Rsm22 PF09243.5 gi|20091604|ref|NP_617679.1| - 0.14 11.1 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 TetR_N PF00440.18 gi|20091605|ref|NP_617680.1| - 3.7e-18 64.9 0.3 7.3e-18 63.9 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.6 gi|20091605|ref|NP_617680.1| - 0.00075 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region PP_M1 PF03012.9 gi|20091605|ref|NP_617680.1| - 0.019 14.3 0.1 0.023 14.0 0.1 1.1 1 0 0 1 1 1 0 Phosphoprotein Cep57_MT_bd PF06657.8 gi|20091605|ref|NP_617680.1| - 0.12 12.3 0.5 6.8 6.7 0.0 2.6 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF234 PF03008.9 gi|20091606|ref|NP_617681.1| - 0.06 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function PAS_9 PF13426.1 gi|20091607|ref|NP_617682.1| - 1.9e-73 243.4 0.3 4.8e-18 65.4 0.0 7.5 7 0 0 7 7 7 7 PAS domain PAS_3 PF08447.6 gi|20091607|ref|NP_617682.1| - 1.7e-64 213.9 0.0 7.6e-20 70.8 0.0 6.3 6 1 0 6 6 6 5 PAS fold PAS PF00989.19 gi|20091607|ref|NP_617682.1| - 9.1e-54 180.0 0.0 3.3e-14 52.6 0.0 6.4 6 0 0 6 6 6 6 PAS fold PAS_4 PF08448.5 gi|20091607|ref|NP_617682.1| - 1e-36 125.2 0.0 1.9e-09 37.5 0.0 7.0 6 1 0 6 6 6 5 PAS fold PAS_8 PF13188.1 gi|20091607|ref|NP_617682.1| - 3.9e-33 112.1 0.0 3.2e-08 33.1 0.0 5.5 5 0 0 5 5 5 4 PAS domain HisKA_2 PF07568.7 gi|20091607|ref|NP_617682.1| - 2.2e-31 107.5 2.5 2.2e-31 107.5 1.7 2.4 2 0 0 2 2 1 1 Histidine kinase PAS_7 PF12860.2 gi|20091607|ref|NP_617682.1| - 2.1e-12 47.0 4.0 0.07 13.1 0.0 8.0 9 0 0 9 9 9 2 PAS fold PAS_10 PF13596.1 gi|20091607|ref|NP_617682.1| - 8.5e-12 45.2 0.0 0.00016 21.9 0.0 3.0 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|20091607|ref|NP_617682.1| - 1.3e-09 37.7 0.1 3.9e-09 36.2 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ArsC PF03960.10 gi|20091607|ref|NP_617682.1| - 0.002 18.1 3.6 0.24 11.4 0.1 3.9 3 0 0 3 3 3 1 ArsC family HWE_HK PF07536.9 gi|20091607|ref|NP_617682.1| - 0.0036 17.7 0.9 0.012 16.0 0.1 2.3 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|20091607|ref|NP_617682.1| - 0.046 13.5 0.0 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HTH_23 PF13384.1 gi|20091608|ref|NP_617683.1| - 1.6e-06 27.5 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20091608|ref|NP_617683.1| - 7.9e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20091608|ref|NP_617683.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091608|ref|NP_617683.1| - 0.00067 19.7 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20091608|ref|NP_617683.1| - 0.0061 16.0 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091608|ref|NP_617683.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20091608|ref|NP_617683.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20091608|ref|NP_617683.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20091608|ref|NP_617683.1| - 0.02 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20091608|ref|NP_617683.1| - 0.051 13.5 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20091608|ref|NP_617683.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20091608|ref|NP_617683.1| - 0.079 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20091608|ref|NP_617683.1| - 0.13 12.2 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20091608|ref|NP_617683.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20091608|ref|NP_617683.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|20091608|ref|NP_617683.1| - 5.6 6.7 7.5 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DDE_Tnp_IS1 PF03400.8 gi|20091609|ref|NP_617684.1| - 1.5e-08 34.7 0.1 1.7e-08 34.6 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_37 PF13744.1 gi|20091610|ref|NP_617685.1| - 0.019 14.7 1.0 0.036 13.8 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20091610|ref|NP_617685.1| - 0.029 14.1 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Pex14_N PF04695.8 gi|20091610|ref|NP_617685.1| - 0.052 13.6 1.3 0.066 13.2 0.9 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_23 PF13384.1 gi|20091610|ref|NP_617685.1| - 0.052 13.2 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.17 gi|20091610|ref|NP_617685.1| - 0.073 12.9 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.11 gi|20091610|ref|NP_617685.1| - 0.083 12.2 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 Histone_HNS PF00816.16 gi|20091610|ref|NP_617685.1| - 0.15 12.5 3.0 0.53 10.8 2.1 1.9 1 1 0 1 1 1 0 H-NS histone family DUF4473 PF14747.1 gi|20091610|ref|NP_617685.1| - 0.15 12.2 2.3 0.46 10.7 1.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4473) Fib_alpha PF08702.5 gi|20091611|ref|NP_617686.1| - 0.007 16.5 0.2 0.0088 16.1 0.1 1.1 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Angiomotin_C PF12240.3 gi|20091611|ref|NP_617686.1| - 0.019 14.4 0.1 0.024 14.1 0.1 1.1 1 0 0 1 1 1 0 Angiomotin C terminal DUF3450 PF11932.3 gi|20091611|ref|NP_617686.1| - 0.036 13.3 0.2 0.046 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CPSase_sm_chain PF00988.17 gi|20091611|ref|NP_617686.1| - 0.046 13.2 0.1 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase small chain, CPSase domain COG2 PF06148.6 gi|20091613|ref|NP_617688.1| - 0.15 11.9 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 RVP PF00077.15 gi|20091614|ref|NP_617689.1| - 6.3e-07 29.2 0.0 7.4e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease_2 PF13650.1 gi|20091614|ref|NP_617689.1| - 3.8e-05 24.1 0.0 5.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|20091614|ref|NP_617689.1| - 0.023 14.4 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Phage_integrase PF00589.17 gi|20091615|ref|NP_617690.1| - 1.7e-07 31.0 0.0 1.7e-06 27.8 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family PKD PF00801.15 gi|20091616|ref|NP_617691.1| - 2.1e-65 216.4 79.8 5.3e-18 64.5 5.0 8.6 8 1 1 9 9 9 5 PKD domain DUF3344 PF11824.3 gi|20091616|ref|NP_617691.1| - 1.7e-57 194.8 18.3 1.7e-57 194.8 12.7 5.8 6 2 2 8 8 6 1 Protein of unknown function (DUF3344) CHB_HEX_C PF03174.8 gi|20091616|ref|NP_617691.1| - 2.2e-46 155.5 54.5 5.9e-18 64.4 3.3 7.4 7 0 0 7 7 7 3 Chitobiase/beta-hexosaminidase C-terminal domain DUF2341 PF10102.4 gi|20091616|ref|NP_617691.1| - 4.4e-43 145.3 34.4 7.1e-23 80.5 4.8 5.2 4 0 0 4 4 3 2 Domain of unknown function (DUF2341) CHB_HEX_C_1 PF13290.1 gi|20091616|ref|NP_617691.1| - 1.7e-39 133.4 23.7 1.1e-15 57.0 3.0 7.9 9 0 0 9 9 9 3 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.1 gi|20091616|ref|NP_617691.1| - 5.1e-38 128.9 28.9 8e-16 57.8 2.9 6.4 7 0 0 7 7 7 3 Fn3 associated CARDB PF07705.6 gi|20091616|ref|NP_617691.1| - 7e-23 80.5 13.3 7e-23 80.5 9.2 6.5 5 1 0 5 5 5 1 CARDB EF-hand_1 PF00036.27 gi|20091616|ref|NP_617691.1| - 0.035 13.3 4.3 0.032 13.5 1.3 2.3 2 0 0 2 2 2 0 EF hand RabGGT_insert PF07711.6 gi|20091616|ref|NP_617691.1| - 0.11 12.2 0.0 20 5.0 0.0 2.8 2 0 0 2 2 2 0 Rab geranylgeranyl transferase alpha-subunit, insert domain EF-hand_6 PF13405.1 gi|20091616|ref|NP_617691.1| - 0.3 11.1 4.5 0.11 12.3 0.3 2.5 2 0 0 2 2 1 0 EF-hand domain EF-hand_8 PF13833.1 gi|20091616|ref|NP_617691.1| - 1.2 8.8 3.1 3.7 7.2 2.1 1.9 1 0 0 1 1 1 0 EF-hand domain pair PEGA PF08308.6 gi|20091617|ref|NP_617692.1| - 8.1e-20 70.3 0.0 2.2e-19 68.9 0.0 1.8 1 0 0 1 1 1 1 PEGA domain Kelch_4 PF13418.1 gi|20091617|ref|NP_617692.1| - 0.00036 20.2 3.5 4.3 7.1 0.0 5.0 5 0 0 5 5 5 3 Galactose oxidase, central domain DUF295 PF03478.13 gi|20091617|ref|NP_617692.1| - 0.55 9.6 4.2 6.6 6.1 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF295) Peptidase_S49_N PF08496.5 gi|20091618|ref|NP_617693.1| - 2.7 7.7 6.4 0.22 11.2 0.3 2.1 2 0 0 2 2 2 0 Peptidase family S49 N-terminal RVT_1 PF00078.22 gi|20091619|ref|NP_617694.1| - 2.8e-47 160.8 0.0 5.1e-47 159.9 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.6 gi|20091619|ref|NP_617694.1| - 1.8e-17 62.8 6.9 1.8e-17 62.8 4.8 1.9 2 0 0 2 2 2 1 Group II intron, maturase-specific domain Rhodanese PF00581.15 gi|20091619|ref|NP_617694.1| - 0.1 12.9 0.4 2.4 8.5 0.0 2.7 2 1 0 2 2 2 0 Rhodanese-like domain Mga PF05043.8 gi|20091619|ref|NP_617694.1| - 0.13 12.5 0.1 0.44 10.8 0.0 1.9 2 0 0 2 2 2 0 Mga helix-turn-helix domain GIIM PF08388.6 gi|20091621|ref|NP_617696.1| - 2.5e-25 88.0 4.3 6.2e-25 86.8 2.9 1.7 1 0 0 1 1 1 1 Group II intron, maturase-specific domain Menin PF05053.8 gi|20091621|ref|NP_617696.1| - 0.076 11.1 0.4 0.14 10.3 0.1 1.5 1 1 1 2 2 2 0 Menin DDE_Tnp_1_6 PF13751.1 gi|20091622|ref|NP_617697.1| - 8.2e-27 93.6 9.2 8.2e-27 93.6 6.3 2.3 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|20091622|ref|NP_617697.1| - 6.1e-15 54.8 0.0 2.8e-14 52.7 0.0 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|20091622|ref|NP_617697.1| - 5.5e-12 45.6 1.3 5.5e-12 45.6 0.9 2.1 1 1 1 2 2 2 1 Transposase DDE domain Ribosomal_L32p PF01783.18 gi|20091622|ref|NP_617697.1| - 0.11 12.7 0.1 0.11 12.7 0.1 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF4404 PF14357.1 gi|20091622|ref|NP_617697.1| - 1.5 9.3 4.2 2 8.8 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4404) DUF3106 PF11304.3 gi|20091625|ref|NP_617700.1| - 0.012 16.0 0.0 0.012 15.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) Alpha_TIF PF02232.10 gi|20091625|ref|NP_617700.1| - 0.031 13.1 0.0 0.033 13.0 0.0 1.0 1 0 0 1 1 1 0 Alpha trans-inducing protein (Alpha-TIF) Pinin_SDK_memA PF04696.8 gi|20091625|ref|NP_617700.1| - 0.039 13.5 0.1 0.042 13.4 0.1 1.2 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region DUF2629 PF10945.3 gi|20091625|ref|NP_617700.1| - 0.04 13.2 0.1 0.94 8.8 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2629) Eno-Rase_FAD_bd PF07055.7 gi|20091625|ref|NP_617700.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Enoyl reductase FAD binding domain HEAT_2 PF13646.1 gi|20091630|ref|NP_617705.1| - 1e-34 118.6 4.8 1.5e-14 54.0 0.5 3.4 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|20091630|ref|NP_617705.1| - 8.1e-20 69.2 1.6 7.6e-06 25.9 0.2 5.5 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|20091630|ref|NP_617705.1| - 4.6e-17 61.9 0.8 1.9e-05 24.9 0.5 4.8 3 2 2 5 5 5 4 HEAT-like repeat HEAT PF02985.17 gi|20091630|ref|NP_617705.1| - 3.6e-15 54.6 0.6 0.0057 16.6 0.0 6.1 6 0 0 6 6 6 3 HEAT repeat Arm PF00514.18 gi|20091630|ref|NP_617705.1| - 1.7e-05 24.4 0.3 0.16 11.8 0.0 4.2 5 0 0 5 5 5 2 Armadillo/beta-catenin-like repeat DUF605 PF04652.11 gi|20091632|ref|NP_617707.1| - 0.41 9.9 5.4 0.57 9.5 3.7 1.1 1 0 0 1 1 1 0 Vta1 like Phage_integrase PF00589.17 gi|20091635|ref|NP_617710.1| - 9.2e-19 67.7 0.0 1.6e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|20091635|ref|NP_617710.1| - 5.8e-14 52.1 0.6 1.5e-13 50.8 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|20091635|ref|NP_617710.1| - 5.6e-10 39.2 0.7 3.5e-07 30.2 0.1 2.1 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain HTH_40 PF14493.1 gi|20091635|ref|NP_617710.1| - 0.022 14.9 0.1 0.068 13.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MFS_1 PF07690.11 gi|20091636|ref|NP_617711.1| - 1.5 7.4 7.9 3 6.4 0.3 2.1 2 0 0 2 2 2 0 Major Facilitator Superfamily FKBP_C PF00254.23 gi|20091637|ref|NP_617712.1| - 2e-14 53.3 0.5 1e-12 47.9 0.0 2.3 2 0 0 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase NikR_C PF08753.6 gi|20091638|ref|NP_617713.1| - 2.6e-30 104.1 0.4 3.7e-30 103.6 0.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|20091638|ref|NP_617713.1| - 0.00018 21.2 0.0 0.00043 20.0 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Acetyltransf_1 PF00583.19 gi|20091639|ref|NP_617714.1| - 2.6e-15 56.1 0.0 4.2e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20091639|ref|NP_617714.1| - 2.5e-13 49.9 0.4 4.3e-13 49.2 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20091639|ref|NP_617714.1| - 1.5e-10 41.2 1.5 1.8e-10 40.9 1.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20091639|ref|NP_617714.1| - 1.2e-07 31.3 0.0 1.9e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20091639|ref|NP_617714.1| - 1.8e-07 31.1 0.0 2.4e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20091639|ref|NP_617714.1| - 1.9e-07 31.2 0.0 2.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20091639|ref|NP_617714.1| - 1.7e-06 27.9 0.0 3e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20091639|ref|NP_617714.1| - 2.6e-05 24.3 0.0 3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20091639|ref|NP_617714.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.19 gi|20091640|ref|NP_617715.1| - 1.9e-15 56.6 0.0 2.9e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20091640|ref|NP_617715.1| - 3.4e-11 43.1 0.2 1.1e-10 41.5 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20091640|ref|NP_617715.1| - 1.1e-09 37.8 0.0 1.9e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|20091640|ref|NP_617715.1| - 2.2e-08 34.1 0.6 3e-08 33.7 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20091640|ref|NP_617715.1| - 2.1e-07 31.0 0.0 4.1e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20091640|ref|NP_617715.1| - 1.2e-06 28.4 0.0 1.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20091640|ref|NP_617715.1| - 2.5e-06 27.3 0.0 3.5e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20091640|ref|NP_617715.1| - 6.9e-05 23.0 0.0 9.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20091640|ref|NP_617715.1| - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Lge1 PF11488.3 gi|20091640|ref|NP_617715.1| - 0.05 13.8 0.1 0.3 11.3 0.1 2.3 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 Na_Ca_ex PF01699.19 gi|20091641|ref|NP_617716.1| - 4.2e-51 172.2 37.9 3.4e-26 91.5 11.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Trypan_PARP PF05887.6 gi|20091641|ref|NP_617716.1| - 0.036 13.8 1.6 0.062 13.1 1.1 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF4131 PF13567.1 gi|20091641|ref|NP_617716.1| - 1.1 8.6 10.2 10 5.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ACT_7 PF13840.1 gi|20091642|ref|NP_617717.1| - 1.3e-23 82.2 0.0 1.9e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 ACT domain DUF2582 PF10771.4 gi|20091643|ref|NP_617718.1| - 4.4e-22 77.7 0.1 4.8e-22 77.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) DDE_Tnp_1_6 PF13751.1 gi|20091644|ref|NP_617719.1| - 8.8e-29 100.0 8.1 1.4e-28 99.3 5.6 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20091644|ref|NP_617719.1| - 0.0001 21.9 2.3 0.00014 21.5 1.6 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF2800 PF10926.3 gi|20091644|ref|NP_617719.1| - 0.057 12.5 1.1 0.072 12.1 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) IstB_IS21 PF01695.12 gi|20091645|ref|NP_617720.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20091645|ref|NP_617720.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20091645|ref|NP_617720.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20091645|ref|NP_617720.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20091645|ref|NP_617720.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20091645|ref|NP_617720.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20091645|ref|NP_617720.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20091645|ref|NP_617720.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20091645|ref|NP_617720.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20091645|ref|NP_617720.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20091645|ref|NP_617720.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20091645|ref|NP_617720.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20091645|ref|NP_617720.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20091645|ref|NP_617720.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20091645|ref|NP_617720.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20091645|ref|NP_617720.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20091645|ref|NP_617720.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20091645|ref|NP_617720.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20091645|ref|NP_617720.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20091645|ref|NP_617720.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20091645|ref|NP_617720.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20091645|ref|NP_617720.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20091645|ref|NP_617720.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20091645|ref|NP_617720.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20091645|ref|NP_617720.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20091645|ref|NP_617720.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20091645|ref|NP_617720.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20091645|ref|NP_617720.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20091646|ref|NP_617721.1| - 7.7e-20 71.1 0.0 1.4e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20091646|ref|NP_617721.1| - 6.6e-07 28.7 0.1 1.7e-06 27.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20091646|ref|NP_617721.1| - 1.2e-05 25.0 0.2 2.8e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|20091646|ref|NP_617721.1| - 2e-05 24.0 0.5 9e-05 21.9 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain rve_3 PF13683.1 gi|20091646|ref|NP_617721.1| - 2.5e-05 23.6 0.0 5.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain Sigma70_r4 PF04545.11 gi|20091646|ref|NP_617721.1| - 0.0019 17.4 0.2 0.026 13.8 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|20091646|ref|NP_617721.1| - 0.0067 16.5 0.0 0.2 11.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20091646|ref|NP_617721.1| - 0.0098 15.5 0.0 0.035 13.7 0.0 1.9 1 0 0 1 1 1 1 Tc3 transposase HTH_3 PF01381.17 gi|20091646|ref|NP_617721.1| - 0.015 15.1 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Terminase_5 PF06056.7 gi|20091646|ref|NP_617721.1| - 0.015 14.7 0.0 0.047 13.2 0.0 1.8 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|20091646|ref|NP_617721.1| - 0.017 15.2 0.0 0.067 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20091646|ref|NP_617721.1| - 0.019 14.9 0.2 0.1 12.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20091646|ref|NP_617721.1| - 0.05 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4_2 PF08281.7 gi|20091646|ref|NP_617721.1| - 0.053 12.9 0.1 0.15 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|20091646|ref|NP_617721.1| - 0.073 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MerR_1 PF13411.1 gi|20091646|ref|NP_617721.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF772 PF05598.6 gi|20091647|ref|NP_617722.1| - 2.2e-16 59.5 0.0 3.9e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF4404 PF14357.1 gi|20091647|ref|NP_617722.1| - 0.11 12.9 0.8 0.77 10.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) DUF3797 PF12677.2 gi|20091649|ref|NP_617724.1| - 0.029 13.9 10.1 0.38 10.4 0.1 4.3 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.2 gi|20091649|ref|NP_617724.1| - 0.041 13.6 1.1 0.041 13.6 0.8 3.1 2 1 0 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|20091649|ref|NP_617724.1| - 0.058 13.0 5.0 2 8.1 0.2 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Desulfoferrod_N PF06397.7 gi|20091649|ref|NP_617724.1| - 0.07 12.5 12.2 1.3 8.4 0.2 3.6 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain Stc1 PF12898.2 gi|20091649|ref|NP_617724.1| - 0.072 13.1 0.8 0.41 10.7 0.6 2.2 1 1 1 2 2 2 0 Stc1 domain zf-ribbon_3 PF13248.1 gi|20091649|ref|NP_617724.1| - 0.1 11.8 7.5 0.27 10.4 0.0 3.5 4 0 0 4 4 4 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|20091649|ref|NP_617724.1| - 0.23 11.7 10.3 1.5 9.1 2.1 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.5 gi|20091649|ref|NP_617724.1| - 0.27 10.7 14.1 0.74 9.3 0.1 4.5 4 0 0 4 4 4 0 A2L zinc ribbon domain C1_1 PF00130.17 gi|20091649|ref|NP_617724.1| - 0.41 10.4 0.1 0.41 10.4 0.1 3.0 2 2 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.1 gi|20091649|ref|NP_617724.1| - 0.56 10.5 6.3 50 4.3 2.3 3.2 1 1 0 2 2 2 0 Restriction alleviation protein Lar FUR PF01475.14 gi|20091649|ref|NP_617724.1| - 2 8.3 4.8 2 8.3 0.1 2.8 3 0 0 3 3 3 0 Ferric uptake regulator family DZR PF12773.2 gi|20091649|ref|NP_617724.1| - 3.1 7.7 10.3 0.45 10.3 0.9 3.1 2 2 0 2 2 2 0 Double zinc ribbon Elf1 PF05129.8 gi|20091649|ref|NP_617724.1| - 3.8 7.2 10.0 3.2 7.4 0.0 3.9 1 1 1 3 3 3 0 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.1 gi|20091649|ref|NP_617724.1| - 9.8 5.9 9.8 5.4 6.7 0.4 3.9 4 0 0 4 4 4 0 Nudix N-terminal TPR_1 PF00515.23 gi|20091650|ref|NP_617725.1| - 5.1e-160 513.2 95.4 3.4e-10 39.0 0.1 24.8 25 0 0 25 25 25 24 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20091650|ref|NP_617725.1| - 6.2e-144 467.8 87.4 1.5e-13 50.1 0.1 15.3 10 3 4 16 16 16 16 TPR repeat TPR_2 PF07719.12 gi|20091650|ref|NP_617725.1| - 1.2e-138 440.1 84.1 3.6e-08 32.7 0.1 25.0 25 0 0 25 25 25 21 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20091650|ref|NP_617725.1| - 5.3e-103 335.9 34.7 2.4e-10 40.7 1.0 16.7 6 5 10 18 18 18 18 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20091650|ref|NP_617725.1| - 1.5e-89 287.2 98.7 2.6e-07 29.9 0.1 24.0 20 4 4 24 24 24 21 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20091650|ref|NP_617725.1| - 2.5e-82 263.7 29.6 1.1e-05 25.6 0.1 22.3 7 7 16 23 23 23 18 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20091650|ref|NP_617725.1| - 1.1e-81 262.3 76.7 1.2e-05 25.1 0.1 25.3 25 1 1 26 26 26 16 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20091650|ref|NP_617725.1| - 1.1e-79 262.3 68.8 5.5e-10 39.0 1.7 15.7 4 4 13 17 17 17 17 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20091650|ref|NP_617725.1| - 2.3e-73 242.0 32.1 2.3e-09 36.9 0.2 12.8 9 4 3 12 12 12 12 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20091650|ref|NP_617725.1| - 2.6e-59 197.4 50.1 3.8e-07 30.3 0.7 14.3 9 4 6 16 16 16 12 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20091650|ref|NP_617725.1| - 1.9e-49 161.5 65.7 0.0043 16.7 0.0 21.2 18 3 4 22 22 21 13 Tetratricopeptide repeat Apc3 PF12895.2 gi|20091650|ref|NP_617725.1| - 1.1e-38 131.2 57.8 1.9e-05 24.6 0.4 11.7 7 3 6 13 13 13 12 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|20091650|ref|NP_617725.1| - 2.3e-37 124.8 59.9 0.0034 17.7 0.1 22.6 24 0 0 24 24 23 8 Tetratricopeptide repeat NARP1 PF12569.3 gi|20091650|ref|NP_617725.1| - 1.8e-25 89.6 25.3 0.0011 17.8 0.0 9.9 4 2 3 9 9 9 7 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|20091650|ref|NP_617725.1| - 8.2e-19 67.2 77.0 0.02 14.7 0.1 18.2 19 2 0 19 19 18 8 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|20091650|ref|NP_617725.1| - 7.7e-15 54.5 55.3 0.081 12.8 0.0 18.5 22 0 0 22 22 20 4 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|20091650|ref|NP_617725.1| - 6.3e-11 41.8 32.5 0.0016 17.5 1.9 9.2 3 3 3 8 8 8 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20091650|ref|NP_617725.1| - 1.3e-09 38.0 22.9 0.64 9.8 0.1 12.8 5 3 7 12 12 12 1 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|20091650|ref|NP_617725.1| - 1.5e-09 38.3 26.5 0.00036 20.8 0.9 8.9 5 3 6 11 11 10 2 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|20091650|ref|NP_617725.1| - 7.1e-09 35.7 23.3 8.9e-05 22.5 0.2 9.3 5 3 5 10 10 9 2 Tetratrico peptide repeat TPR_10 PF13374.1 gi|20091650|ref|NP_617725.1| - 1.1e-08 34.6 50.1 0.068 13.1 0.1 15.8 18 0 0 18 18 17 3 Tetratricopeptide repeat TPR_20 PF14561.1 gi|20091650|ref|NP_617725.1| - 1.8e-06 27.9 14.9 0.83 9.8 0.0 8.3 4 2 6 10 10 10 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20091650|ref|NP_617725.1| - 0.00034 20.7 15.3 3.2 8.4 0.0 9.7 11 0 0 11 11 9 1 Tetratricopeptide repeat FAT PF02259.18 gi|20091650|ref|NP_617725.1| - 0.00056 19.0 24.6 0.046 12.6 0.1 8.4 5 3 1 6 6 6 1 FAT domain DUF627 PF04781.7 gi|20091650|ref|NP_617725.1| - 0.0015 18.1 6.3 28 4.3 0.0 7.2 7 1 0 8 8 8 0 Protein of unknown function (DUF627) EST1_DNA_bind PF10373.4 gi|20091650|ref|NP_617725.1| - 0.0041 16.3 1.8 0.57 9.3 0.1 3.9 5 0 0 5 5 4 1 Est1 DNA/RNA binding domain ChAPs PF09295.5 gi|20091650|ref|NP_617725.1| - 0.22 10.2 7.8 5.5 5.6 0.0 5.4 6 1 1 7 7 7 0 ChAPs (Chs5p-Arf1p-binding proteins) Coatomer_E PF04733.9 gi|20091650|ref|NP_617725.1| - 0.28 10.3 18.1 0.66 9.1 0.3 6.6 5 2 1 7 7 7 0 Coatomer epsilon subunit PPR PF01535.15 gi|20091650|ref|NP_617725.1| - 2.4 8.3 25.9 13 5.9 0.0 11.6 17 0 0 17 17 13 0 PPR repeat HD PF01966.17 gi|20091651|ref|NP_617726.1| - 7.1e-08 32.4 0.1 1.2e-07 31.7 0.1 1.4 1 0 0 1 1 1 1 HD domain NIF3 PF01784.13 gi|20091652|ref|NP_617727.1| - 1.2e-55 188.7 0.0 1.5e-55 188.4 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) MULE PF10551.4 gi|20091653|ref|NP_617728.1| - 6.3e-11 42.2 0.0 1.6e-10 41.0 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain BDV_P24 PF06595.6 gi|20091653|ref|NP_617728.1| - 0.04 13.6 1.2 0.12 12.1 0.2 2.0 1 1 1 2 2 2 0 Borna disease virus P24 protein Zn_ribbon_recom PF13408.1 gi|20091653|ref|NP_617728.1| - 0.14 12.3 2.4 0.61 10.3 1.7 2.0 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|20091653|ref|NP_617728.1| - 0.17 11.2 2.8 1.1 8.6 0.4 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20091653|ref|NP_617728.1| - 0.18 11.0 0.2 0.18 11.0 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|20091653|ref|NP_617728.1| - 0.19 11.4 2.6 1.4 8.5 0.2 2.5 2 0 0 2 2 2 0 HIT zinc finger Peptidase_M3_N PF08439.5 gi|20091653|ref|NP_617728.1| - 0.52 10.3 5.4 0.29 11.1 1.1 2.5 2 1 0 2 2 2 0 Oligopeptidase F DUF377 PF04041.8 gi|20091655|ref|NP_617730.1| - 1.4e-56 191.5 0.0 1.6e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) E1-E2_ATPase PF00122.15 gi|20091657|ref|NP_617732.1| - 5.2e-68 228.5 1.8 5.2e-68 228.5 1.3 3.4 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|20091657|ref|NP_617732.1| - 2.2e-29 103.3 0.3 3.6e-29 102.7 0.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20091657|ref|NP_617732.1| - 5.7e-17 62.5 0.0 1.2e-16 61.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|20091657|ref|NP_617732.1| - 2.6e-15 55.6 0.7 5.9e-15 54.4 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|20091657|ref|NP_617732.1| - 3.2e-07 30.1 0.6 9.8e-05 22.0 0.2 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF377 PF04041.8 gi|20091658|ref|NP_617733.1| - 8.2e-58 195.5 0.0 1e-57 195.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) DUF4096 PF13340.1 gi|20091659|ref|NP_617734.1| - 4.9e-31 106.4 1.1 9.2e-31 105.5 0.8 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.16 gi|20091659|ref|NP_617734.1| - 9.7e-24 84.0 1.0 5.4e-23 81.6 0.7 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|20091659|ref|NP_617734.1| - 8.8e-17 61.0 0.1 1.9e-16 59.9 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|20091659|ref|NP_617734.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain rve PF00665.21 gi|20091660|ref|NP_617735.1| - 9.1e-14 51.6 0.0 2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091660|ref|NP_617735.1| - 5.1e-06 25.9 0.1 0.00012 21.5 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20091660|ref|NP_617735.1| - 8.3e-05 22.7 0.0 0.00019 21.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20091660|ref|NP_617735.1| - 9.3e-05 21.9 0.2 0.00023 20.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091660|ref|NP_617735.1| - 0.029 14.3 0.2 0.062 13.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20091660|ref|NP_617735.1| - 0.085 12.3 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal Na_Ala_symp PF01235.12 gi|20091661|ref|NP_617736.1| - 2.6e-144 480.8 23.3 3.3e-144 480.5 16.2 1.0 1 0 0 1 1 1 1 Sodium:alanine symporter family CARDB PF07705.6 gi|20091662|ref|NP_617737.1| - 1.2e-18 66.9 0.1 1.5e-06 28.1 0.0 3.4 3 0 0 3 3 3 3 CARDB DUF11 PF01345.13 gi|20091662|ref|NP_617737.1| - 4.6e-07 29.7 3.4 0.0034 17.4 0.1 3.6 3 1 0 3 3 3 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|20091662|ref|NP_617737.1| - 5.3e-07 29.5 0.0 1.9 8.5 0.0 4.3 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2393 PF09624.5 gi|20091662|ref|NP_617737.1| - 2.5e-06 27.0 1.5 0.039 13.4 0.0 3.5 3 3 0 3 3 3 2 Protein of unknown function (DUF2393) DUF4352 PF11611.3 gi|20091662|ref|NP_617737.1| - 1e-05 25.6 0.7 8.4e-05 22.7 0.1 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4352) Gryzun PF07919.7 gi|20091662|ref|NP_617737.1| - 0.00035 19.0 0.1 0.27 9.4 0.0 2.2 2 0 0 2 2 2 2 Gryzun, putative trafficking through Golgi DUF4625 PF15418.1 gi|20091662|ref|NP_617737.1| - 0.001 19.1 0.0 0.027 14.5 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4625) TRAP_beta PF05753.9 gi|20091662|ref|NP_617737.1| - 0.0035 16.5 0.2 0.44 9.6 0.0 3.1 3 0 0 3 3 3 1 Translocon-associated protein beta (TRAPB) Transglut_C PF00927.17 gi|20091662|ref|NP_617737.1| - 0.086 12.8 0.0 4.7 7.2 0.0 3.2 3 0 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain MacB_PCD PF12704.2 gi|20091663|ref|NP_617738.1| - 1.7e-18 67.0 1.0 1.7e-18 67.0 0.7 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20091663|ref|NP_617738.1| - 2.6e-11 43.3 7.3 2.6e-11 43.3 5.1 2.2 2 0 0 2 2 2 1 FtsX-like permease family Abi PF02517.11 gi|20091663|ref|NP_617738.1| - 0.56 10.3 3.1 0.28 11.3 0.1 1.9 2 0 0 2 2 2 0 CAAX protease self-immunity ABC_tran PF00005.22 gi|20091664|ref|NP_617739.1| - 7.9e-33 113.6 0.0 1.1e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20091664|ref|NP_617739.1| - 7.8e-11 42.4 0.0 1.8e-08 34.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091664|ref|NP_617739.1| - 3.8e-07 29.5 0.2 3.8e-06 26.2 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|20091664|ref|NP_617739.1| - 1.6e-06 28.4 0.1 0.0013 18.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20091664|ref|NP_617739.1| - 1.5e-05 25.1 0.1 0.00014 22.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|20091664|ref|NP_617739.1| - 9.7e-05 21.8 0.0 0.0026 17.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20091664|ref|NP_617739.1| - 0.00011 22.2 0.1 0.00032 20.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|20091664|ref|NP_617739.1| - 0.00017 21.0 0.1 0.00035 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|20091664|ref|NP_617739.1| - 0.00024 21.1 0.1 0.0007 19.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20091664|ref|NP_617739.1| - 0.00034 19.7 0.0 0.27 10.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|20091664|ref|NP_617739.1| - 0.00045 21.0 0.2 0.0007 20.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20091664|ref|NP_617739.1| - 0.00052 19.2 0.1 0.00088 18.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|20091664|ref|NP_617739.1| - 0.00057 19.7 0.2 0.0056 16.5 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|20091664|ref|NP_617739.1| - 0.00088 19.1 0.1 0.0024 17.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20091664|ref|NP_617739.1| - 0.0011 18.4 0.1 0.0063 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|20091664|ref|NP_617739.1| - 0.0046 16.3 0.0 0.034 13.5 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.1 gi|20091664|ref|NP_617739.1| - 0.005 17.2 0.1 0.0059 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|20091664|ref|NP_617739.1| - 0.0057 15.8 0.0 0.019 14.1 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|20091664|ref|NP_617739.1| - 0.0062 16.1 0.6 0.039 13.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|20091664|ref|NP_617739.1| - 0.0071 15.8 0.1 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|20091664|ref|NP_617739.1| - 0.0084 15.3 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit SRP54 PF00448.17 gi|20091664|ref|NP_617739.1| - 0.0086 15.5 0.2 0.19 11.1 0.0 2.2 1 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|20091664|ref|NP_617739.1| - 0.0099 15.7 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|20091664|ref|NP_617739.1| - 0.01 14.7 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|20091664|ref|NP_617739.1| - 0.011 15.3 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|20091664|ref|NP_617739.1| - 0.014 15.0 0.1 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 NACHT domain KaiC PF06745.8 gi|20091664|ref|NP_617739.1| - 0.015 14.4 0.2 0.74 8.8 0.0 2.5 2 1 1 3 3 3 0 KaiC MMR_HSR1 PF01926.18 gi|20091664|ref|NP_617739.1| - 0.02 14.8 0.1 0.03 14.2 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|20091664|ref|NP_617739.1| - 0.023 15.1 0.0 0.042 14.3 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|20091664|ref|NP_617739.1| - 0.024 14.3 0.1 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B G-alpha PF00503.15 gi|20091664|ref|NP_617739.1| - 0.033 12.8 0.0 0.033 12.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.1 gi|20091664|ref|NP_617739.1| - 0.046 13.2 0.3 0.13 11.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|20091664|ref|NP_617739.1| - 0.056 11.9 0.0 0.08 11.4 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein NB-ARC PF00931.17 gi|20091664|ref|NP_617739.1| - 0.069 12.0 0.1 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|20091664|ref|NP_617739.1| - 0.078 13.1 0.7 5.2 7.2 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|20091664|ref|NP_617739.1| - 0.14 12.3 0.1 0.66 10.1 0.0 2.0 2 1 0 2 2 2 0 RNA helicase DUF1577 PF07614.6 gi|20091665|ref|NP_617740.1| - 0.051 12.4 1.7 0.069 12.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1577) AAA_3 PF07726.6 gi|20091666|ref|NP_617741.1| - 1.6e-63 212.1 0.1 2.7e-63 211.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|20091666|ref|NP_617741.1| - 6.8e-10 38.8 0.0 1.9e-09 37.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|20091666|ref|NP_617741.1| - 3.6e-07 29.3 0.4 4.4e-06 25.7 0.3 2.5 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|20091666|ref|NP_617741.1| - 1.7e-06 28.2 0.0 4e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|20091666|ref|NP_617741.1| - 2.6e-06 26.6 0.8 5.4e-05 22.3 0.6 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|20091666|ref|NP_617741.1| - 0.00027 20.1 0.4 0.011 14.8 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|20091666|ref|NP_617741.1| - 0.00082 18.8 0.1 0.016 14.7 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|20091666|ref|NP_617741.1| - 0.032 14.1 0.1 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.13 gi|20091667|ref|NP_617742.1| - 1.5e-19 69.9 0.0 2.7e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|20091667|ref|NP_617742.1| - 1.1e-05 24.6 0.4 3.5e-05 23.0 0.2 1.8 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|20091667|ref|NP_617742.1| - 2.8e-05 24.2 0.0 3.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4301 PF14134.1 gi|20091667|ref|NP_617742.1| - 0.081 11.4 0.1 0.09 11.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4301) BatA PF07584.6 gi|20091668|ref|NP_617743.1| - 2.5e-12 46.7 1.2 2.5e-12 46.7 0.8 2.0 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_CoxE PF05762.9 gi|20091668|ref|NP_617743.1| - 0.02 14.0 0.1 0.04 13.0 0.1 1.4 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|20091668|ref|NP_617743.1| - 0.027 14.5 2.6 0.27 11.3 1.7 2.5 1 1 1 2 2 2 0 von Willebrand factor type A domain VWA_2 PF13519.1 gi|20091669|ref|NP_617744.1| - 5e-12 46.2 0.1 6.7e-10 39.3 0.0 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF1355 PF07090.6 gi|20091669|ref|NP_617744.1| - 7e-11 41.8 0.0 1.4e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA_3 PF13768.1 gi|20091669|ref|NP_617744.1| - 4.9e-06 26.3 0.0 1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain ThuA PF06283.6 gi|20091669|ref|NP_617744.1| - 7.9e-05 22.4 0.0 0.00022 20.9 0.0 1.8 1 1 0 1 1 1 1 Trehalose utilisation DUF4159 PF13709.1 gi|20091669|ref|NP_617744.1| - 0.095 11.8 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) UPF0118 PF01594.11 gi|20091671|ref|NP_617746.1| - 2.5e-40 138.4 43.1 3.2e-40 138.1 29.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 CybS PF05328.7 gi|20091671|ref|NP_617746.1| - 7 6.2 9.7 1.4 8.4 1.3 2.7 3 0 0 3 3 3 0 CybS DUF4559 PF15112.1 gi|20091672|ref|NP_617747.1| - 0.27 10.3 6.0 0.097 11.8 2.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) DUF872 PF05915.7 gi|20091673|ref|NP_617748.1| - 0.12 12.2 0.1 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Radical_SAM PF04055.16 gi|20091674|ref|NP_617749.1| - 1.3e-15 58.0 0.0 2.4e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|20091674|ref|NP_617749.1| - 0.0033 17.3 0.0 0.0083 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Thi4 PF01946.12 gi|20091675|ref|NP_617750.1| - 8.5e-82 273.6 0.3 9.7e-82 273.4 0.2 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|20091675|ref|NP_617750.1| - 1.5e-07 30.8 0.4 2.2e-07 30.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|20091675|ref|NP_617750.1| - 4.1e-06 26.7 0.2 1e-05 25.4 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|20091675|ref|NP_617750.1| - 1.2e-05 24.3 0.7 0.0003 19.7 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|20091675|ref|NP_617750.1| - 3e-05 24.0 0.1 3.8e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|20091675|ref|NP_617750.1| - 5.5e-05 22.2 2.2 0.0021 17.0 0.4 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|20091675|ref|NP_617750.1| - 0.00031 19.8 0.1 0.00041 19.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|20091675|ref|NP_617750.1| - 0.00047 18.7 0.1 0.00061 18.3 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|20091675|ref|NP_617750.1| - 0.0048 15.8 0.6 0.0078 15.1 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|20091675|ref|NP_617750.1| - 0.025 13.5 0.4 0.06 12.2 0.2 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|20091675|ref|NP_617750.1| - 0.057 13.8 0.4 0.15 12.4 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|20091675|ref|NP_617750.1| - 0.14 11.8 0.2 0.38 10.5 0.1 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding DUF4064 PF13273.1 gi|20091676|ref|NP_617751.1| - 0.034 14.2 2.0 0.16 12.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) META PF03724.11 gi|20091677|ref|NP_617752.1| - 1.7e-16 59.9 0.0 1.9e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 META domain Lipocalin_4 PF13648.1 gi|20091677|ref|NP_617752.1| - 0.01 16.4 0.1 0.014 15.9 0.1 1.3 1 0 0 1 1 1 0 Lipocalin-like domain TIR_2 PF13676.1 gi|20091678|ref|NP_617753.1| - 4.9e-13 49.1 0.0 8.5e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 TIR domain CpXC PF14353.1 gi|20091678|ref|NP_617753.1| - 0.0016 18.3 0.8 0.0095 15.9 0.8 1.9 1 1 1 2 2 2 2 CpXC protein DUF866 PF05907.8 gi|20091678|ref|NP_617753.1| - 0.011 15.1 0.1 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) PyrI_C PF02748.10 gi|20091678|ref|NP_617753.1| - 0.014 14.8 3.7 0.58 9.6 0.2 2.4 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Cys_rich_CPXG PF14255.1 gi|20091678|ref|NP_617753.1| - 0.014 15.1 2.1 0.059 13.2 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|20091678|ref|NP_617753.1| - 0.076 12.2 2.4 1 8.6 1.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-FCS PF06467.9 gi|20091678|ref|NP_617753.1| - 0.11 12.1 0.4 10 5.8 0.0 2.3 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Lar_restr_allev PF14354.1 gi|20091678|ref|NP_617753.1| - 0.13 12.5 0.4 0.55 10.5 0.5 1.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-Di19 PF05605.7 gi|20091678|ref|NP_617753.1| - 0.14 12.2 2.7 0.59 10.3 0.1 2.5 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|20091678|ref|NP_617753.1| - 0.15 11.5 3.2 1.1 8.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHCC PF10276.4 gi|20091678|ref|NP_617753.1| - 0.19 11.5 1.4 3.8 7.4 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger domain zf-BED PF02892.10 gi|20091678|ref|NP_617753.1| - 3.4 7.4 7.5 1.5 8.6 0.1 2.5 2 1 1 3 3 2 0 BED zinc finger DDE_Tnp_1 PF01609.16 gi|20091681|ref|NP_617756.1| - 6.7e-15 55.2 0.1 8.8e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|20091681|ref|NP_617756.1| - 0.02 15.0 0.0 0.042 14.0 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain BRCT PF00533.21 gi|20091681|ref|NP_617756.1| - 0.22 11.6 1.2 7.8 6.7 0.0 2.6 2 2 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain NADH5_C PF06455.6 gi|20091682|ref|NP_617757.1| - 0.0012 18.2 0.9 0.0012 18.2 0.6 1.1 1 0 0 1 1 1 1 NADH dehydrogenase subunit 5 C-terminus Aminotran_3 PF00202.16 gi|20091683|ref|NP_617758.1| - 1.5e-102 342.9 0.0 1.8e-102 342.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|20091683|ref|NP_617758.1| - 0.0069 15.5 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase PG_binding_2 PF08823.6 gi|20091683|ref|NP_617758.1| - 0.12 12.4 0.0 24 5.1 0.0 2.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Aldedh PF00171.17 gi|20091684|ref|NP_617759.1| - 1.4e-180 600.5 0.0 1.7e-180 600.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|20091684|ref|NP_617759.1| - 0.011 14.4 0.0 0.02 13.6 0.0 1.4 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|20091684|ref|NP_617759.1| - 0.15 11.2 0.0 6.6 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) TPR_16 PF13432.1 gi|20091684|ref|NP_617759.1| - 0.25 12.0 0.9 1.1 10.0 0.2 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Response_reg PF00072.19 gi|20091685|ref|NP_617760.1| - 4.5e-22 78.1 0.0 5.1e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Glyco_trans_1_3 PF13528.1 gi|20091685|ref|NP_617760.1| - 0.055 12.6 0.0 0.064 12.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 1 ThiG PF05690.9 gi|20091685|ref|NP_617760.1| - 0.076 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG GatB_N PF02934.10 gi|20091686|ref|NP_617761.1| - 1.7e-77 260.1 0.1 2.6e-77 259.5 0.1 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|20091686|ref|NP_617761.1| - 5.9e-23 81.2 0.5 5.9e-23 81.2 0.3 2.0 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|20091686|ref|NP_617761.1| - 1.4e-15 57.2 1.1 8.8e-14 51.4 0.1 2.6 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|20091686|ref|NP_617761.1| - 7.5e-05 22.6 0.1 0.00023 21.0 0.1 1.8 1 1 0 1 1 1 1 Yqey-like protein DUF2999 PF11212.3 gi|20091686|ref|NP_617761.1| - 0.023 14.7 0.1 0.097 12.7 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) HTH_24 PF13412.1 gi|20091686|ref|NP_617761.1| - 0.11 11.9 1.1 2.1 7.8 0.1 3.4 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding Usp PF00582.21 gi|20091690|ref|NP_617765.1| - 1.3e-34 119.3 0.1 1.5e-34 119.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family TIR_2 PF13676.1 gi|20091690|ref|NP_617765.1| - 0.17 12.0 0.3 1.5 9.0 0.0 2.4 2 1 0 2 2 2 0 TIR domain Fer4_7 PF12838.2 gi|20091691|ref|NP_617766.1| - 6.8e-34 116.0 56.3 8.6e-12 45.2 3.3 5.0 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20091691|ref|NP_617766.1| - 1.2e-33 113.3 72.9 1.9e-07 30.3 1.9 8.6 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20091691|ref|NP_617766.1| - 5.8e-21 73.3 78.1 2.9e-06 26.8 1.8 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20091691|ref|NP_617766.1| - 9e-21 73.5 60.5 6.5e-05 22.6 4.3 6.7 7 0 0 7 7 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091691|ref|NP_617766.1| - 9.3e-21 73.8 72.9 3e-07 30.5 6.2 6.4 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20091691|ref|NP_617766.1| - 4.2e-20 71.2 74.7 1.5e-07 31.1 6.3 6.4 3 2 5 8 8 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091691|ref|NP_617766.1| - 3.7e-18 66.0 68.3 9.1e-05 23.1 5.0 7.6 5 3 4 9 9 8 7 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|20091691|ref|NP_617766.1| - 1.9e-17 62.0 81.0 4.9e-05 23.0 2.0 8.9 9 0 0 9 9 8 7 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20091691|ref|NP_617766.1| - 3.1e-13 49.5 67.3 2.7e-06 27.2 6.3 5.7 1 1 8 9 9 9 9 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20091691|ref|NP_617766.1| - 8.7e-11 42.0 57.4 0.0014 18.9 5.8 7.6 4 2 2 7 7 7 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20091691|ref|NP_617766.1| - 1.7e-08 34.8 53.0 0.098 13.2 0.5 8.7 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|20091691|ref|NP_617766.1| - 3.6e-06 26.7 38.4 0.00047 19.9 8.7 5.3 3 1 2 5 5 5 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20091691|ref|NP_617766.1| - 0.00067 19.7 3.5 0.00067 19.7 2.4 8.9 9 0 0 9 9 8 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20091691|ref|NP_617766.1| - 0.0018 18.6 61.6 1 9.8 2.4 8.5 8 1 0 8 8 8 5 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20091691|ref|NP_617766.1| - 0.007 16.8 5.6 0.007 16.8 3.9 8.9 9 0 0 9 9 8 4 4Fe-4S binding domain FlpD PF02662.11 gi|20091692|ref|NP_617767.1| - 1.4e-50 170.1 4.7 1.1e-49 167.2 0.1 3.7 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|20091692|ref|NP_617767.1| - 1.6e-14 53.9 42.5 0.00013 22.2 6.0 5.4 3 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20091692|ref|NP_617767.1| - 1.6e-13 49.8 55.7 7.3e-06 25.6 2.8 6.7 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20091692|ref|NP_617767.1| - 4.1e-13 48.9 37.6 5.2e-07 29.3 8.8 5.1 4 1 2 6 6 6 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20091692|ref|NP_617767.1| - 5.1e-13 48.6 48.0 2.1e-08 33.8 7.9 5.9 7 0 0 7 7 5 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20091692|ref|NP_617767.1| - 5.3e-13 47.9 57.4 9.6e-07 28.1 2.4 6.3 6 1 0 6 6 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20091692|ref|NP_617767.1| - 5e-12 45.0 46.9 6.6e-06 25.7 1.8 6.0 6 0 0 6 6 5 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|20091692|ref|NP_617767.1| - 7.3e-12 45.5 3.6 2.7e-09 37.2 0.8 3.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.1 gi|20091692|ref|NP_617767.1| - 5.3e-11 42.6 42.8 6.7e-08 32.6 8.8 5.4 4 1 0 5 5 5 3 4Fe-4S dicluster domain DAO PF01266.19 gi|20091692|ref|NP_617767.1| - 8.9e-09 34.7 0.8 5.7e-06 25.4 0.4 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer4_17 PF13534.1 gi|20091692|ref|NP_617767.1| - 2e-07 31.2 30.0 0.0014 18.9 2.5 4.8 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20091692|ref|NP_617767.1| - 3.2e-07 30.7 22.3 0.028 14.9 0.6 4.9 4 0 0 4 4 4 3 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|20091692|ref|NP_617767.1| - 5e-07 28.9 1.0 9e-07 28.0 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|20091692|ref|NP_617767.1| - 6.5e-07 29.2 38.7 0.00024 21.0 8.4 5.0 3 2 3 6 6 6 4 4Fe-4S dicluster domain GIDA PF01134.17 gi|20091692|ref|NP_617767.1| - 1.9e-06 26.9 1.4 8.2e-06 24.9 0.4 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|20091692|ref|NP_617767.1| - 2.1e-06 27.6 0.0 5.1e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_16 PF13484.1 gi|20091692|ref|NP_617767.1| - 2.5e-06 28.1 39.4 0.0061 17.2 5.8 5.3 5 1 0 5 5 4 3 4Fe-4S double cluster binding domain Pyr_redox PF00070.22 gi|20091692|ref|NP_617767.1| - 2.7e-06 27.7 1.5 9.5e-05 22.7 0.5 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|20091692|ref|NP_617767.1| - 1e-05 24.8 0.1 2e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|20091692|ref|NP_617767.1| - 7.3e-05 22.9 1.5 0.00091 19.3 0.2 2.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|20091692|ref|NP_617767.1| - 8.8e-05 21.7 0.6 0.00014 21.0 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|20091692|ref|NP_617767.1| - 0.00012 20.7 1.9 0.00024 19.7 1.0 1.7 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|20091692|ref|NP_617767.1| - 0.00029 19.9 0.0 0.00063 18.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family K_oxygenase PF13434.1 gi|20091692|ref|NP_617767.1| - 0.0014 17.6 0.2 0.93 8.3 0.0 2.7 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|20091692|ref|NP_617767.1| - 0.0045 17.2 0.2 0.024 14.8 0.0 2.3 2 1 0 2 2 1 1 Putative NAD(P)-binding Fer4_13 PF13370.1 gi|20091692|ref|NP_617767.1| - 0.0046 17.3 29.0 0.19 12.1 1.3 4.5 4 0 0 4 4 4 3 4Fe-4S single cluster domain AlaDh_PNT_C PF01262.16 gi|20091692|ref|NP_617767.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.19 gi|20091692|ref|NP_617767.1| - 0.01 14.9 0.0 0.025 13.6 0.0 1.6 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Response_reg PF00072.19 gi|20091692|ref|NP_617767.1| - 0.014 15.4 0.0 2.1 8.3 0.0 2.7 2 0 0 2 2 2 0 Response regulator receiver domain Fer4_4 PF12800.2 gi|20091692|ref|NP_617767.1| - 0.014 15.6 3.5 0.014 15.6 2.4 6.2 7 0 0 7 7 4 0 4Fe-4S binding domain Trp_halogenase PF04820.9 gi|20091692|ref|NP_617767.1| - 0.019 13.6 1.9 0.13 10.8 0.6 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|20091692|ref|NP_617767.1| - 0.032 14.0 0.1 2 8.2 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|20091692|ref|NP_617767.1| - 0.033 13.8 0.6 0.079 12.6 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_11 PF13247.1 gi|20091692|ref|NP_617767.1| - 0.052 13.4 23.4 0.064 13.1 1.1 3.5 3 1 1 4 4 3 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|20091692|ref|NP_617767.1| - 0.12 11.2 0.5 0.31 9.9 0.3 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_18 PF13746.1 gi|20091692|ref|NP_617767.1| - 5.2 7.5 49.0 0.2 12.0 2.6 5.7 5 1 1 6 6 5 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20091692|ref|NP_617767.1| - 5.5 7.7 67.8 0.078 13.5 2.4 7.0 7 0 0 7 7 5 0 4Fe-4S binding domain DUF2981 PF11200.3 gi|20091693|ref|NP_617768.1| - 1.5 7.8 5.5 1.7 7.6 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) FeThRed_B PF02943.10 gi|20091694|ref|NP_617769.1| - 1.5e-22 79.4 1.8 1.7e-22 79.2 1.3 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Pyr_excise PF03013.9 gi|20091695|ref|NP_617770.1| - 1.3e-06 28.1 0.2 2.4e-06 27.3 0.1 1.6 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase TrmB PF01978.14 gi|20091696|ref|NP_617771.1| - 2.9e-06 26.8 0.0 0.064 12.9 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|20091696|ref|NP_617771.1| - 0.0012 18.6 0.0 0.029 14.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|20091696|ref|NP_617771.1| - 0.0022 18.0 0.0 0.052 13.6 0.0 2.1 2 0 0 2 2 2 1 Penicillinase repressor LIM PF00412.17 gi|20091696|ref|NP_617771.1| - 0.0022 18.0 0.5 0.0043 17.0 0.3 1.5 1 0 0 1 1 1 1 LIM domain PadR PF03551.9 gi|20091696|ref|NP_617771.1| - 0.0074 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|20091696|ref|NP_617771.1| - 0.0075 15.6 0.5 0.15 11.4 0.1 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|20091696|ref|NP_617771.1| - 0.03 13.8 0.0 0.079 12.5 0.0 1.8 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_32 PF13565.1 gi|20091696|ref|NP_617771.1| - 0.098 13.4 0.1 1.3 9.9 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain TFIIE_alpha PF02002.12 gi|20091696|ref|NP_617771.1| - 0.12 11.8 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit CMD PF02627.15 gi|20091697|ref|NP_617772.1| - 1.1e-18 66.8 0.0 1.3e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family TROVE PF05731.6 gi|20091697|ref|NP_617772.1| - 0.097 11.4 0.0 0.097 11.4 0.0 1.1 1 0 0 1 1 1 0 TROVE domain FeS PF04060.8 gi|20091699|ref|NP_617774.1| - 1.9e-13 49.7 2.0 1.9e-13 49.7 1.4 2.5 3 0 0 3 3 3 1 Putative Fe-S cluster Fer4_9 PF13187.1 gi|20091699|ref|NP_617774.1| - 3e-07 30.5 21.6 7.1e-05 22.9 2.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20091699|ref|NP_617774.1| - 3.8e-07 30.3 10.8 0.0001 22.6 3.4 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20091699|ref|NP_617774.1| - 1.9e-06 27.1 22.2 8.2e-06 25.2 2.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20091699|ref|NP_617774.1| - 0.0001 22.0 11.3 0.0029 17.4 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091699|ref|NP_617774.1| - 0.00017 21.3 2.5 0.00017 21.3 1.7 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20091699|ref|NP_617774.1| - 0.00073 19.6 1.7 0.00073 19.6 1.2 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20091699|ref|NP_617774.1| - 0.00096 19.4 9.1 0.0018 18.5 2.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20091699|ref|NP_617774.1| - 0.0017 18.3 12.1 0.0085 16.0 4.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20091699|ref|NP_617774.1| - 0.0041 17.6 0.1 0.0041 17.6 0.1 2.9 3 1 0 3 3 3 1 4Fe-4S single cluster domain YhfH PF14149.1 gi|20091699|ref|NP_617774.1| - 0.0051 16.5 2.1 0.0051 16.5 1.4 2.1 2 0 0 2 2 1 1 YhfH-like protein Fer4_6 PF12837.2 gi|20091699|ref|NP_617774.1| - 0.0067 16.2 3.7 0.0067 16.2 2.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20091699|ref|NP_617774.1| - 0.035 14.8 16.9 1.1 10.0 0.4 2.9 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20091699|ref|NP_617774.1| - 0.1 12.4 22.3 0.029 14.1 7.6 3.3 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091699|ref|NP_617774.1| - 0.34 11.3 14.9 2.9 8.3 6.2 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20091699|ref|NP_617774.1| - 0.37 11.4 24.7 0.25 11.9 1.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|20091699|ref|NP_617774.1| - 0.48 10.3 9.4 1.2 9.1 3.6 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20091699|ref|NP_617774.1| - 1.9 8.9 14.0 2.4 8.6 5.2 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain TPP_enzyme_M PF00205.17 gi|20091700|ref|NP_617775.1| - 0.0002 21.1 0.0 0.0051 16.5 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain DUF3443 PF11925.3 gi|20091700|ref|NP_617775.1| - 0.13 10.9 1.6 1.3 7.6 1.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3443) Molydop_binding PF01568.16 gi|20091701|ref|NP_617776.1| - 1.4e-17 63.5 0.0 3.2e-17 62.3 0.0 1.5 1 1 1 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|20091701|ref|NP_617776.1| - 0.0025 17.7 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain SAM_1 PF00536.25 gi|20091701|ref|NP_617776.1| - 0.094 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) RNA_pol_A_CTD PF03118.10 gi|20091702|ref|NP_617777.1| - 0.068 12.5 0.9 0.1 12.0 0.6 1.3 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Zip PF02535.17 gi|20091703|ref|NP_617778.1| - 1.6e-25 89.7 11.7 6.1e-21 74.7 3.9 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter DUF2721 PF11026.3 gi|20091703|ref|NP_617778.1| - 2.5 7.7 7.8 0.64 9.6 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) Ferritin PF00210.19 gi|20091704|ref|NP_617779.1| - 4.6e-18 65.3 0.0 5.9e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|20091704|ref|NP_617779.1| - 0.034 14.4 0.0 0.045 14.0 0.0 1.2 1 0 0 1 1 1 0 Rubrerythrin Protoglobin PF11563.3 gi|20091705|ref|NP_617780.1| - 9.7e-41 139.0 0.0 1.1e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 Protoglobin Methyltransf_11 PF08241.7 gi|20091706|ref|NP_617781.1| - 4.7e-12 46.2 0.2 1.2e-11 44.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091706|ref|NP_617781.1| - 1.9e-06 27.1 0.0 2.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|20091706|ref|NP_617781.1| - 9.2e-06 25.3 0.0 1.4e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091706|ref|NP_617781.1| - 2e-05 24.9 0.0 4.7e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091706|ref|NP_617781.1| - 4.1e-05 23.3 0.0 7.3e-05 22.5 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091706|ref|NP_617781.1| - 0.0054 17.2 0.5 0.039 14.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091706|ref|NP_617781.1| - 0.018 15.3 0.0 0.038 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SbmA_BacA PF05992.7 gi|20091706|ref|NP_617781.1| - 0.16 11.1 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 SbmA/BacA-like family NosD PF05048.8 gi|20091707|ref|NP_617782.1| - 7.8e-108 359.0 124.6 1.1e-54 185.1 29.1 4.2 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091707|ref|NP_617782.1| - 7e-64 214.3 181.1 1.6e-24 86.4 26.9 4.7 1 1 4 5 5 5 5 Right handed beta helix region NosD PF05048.8 gi|20091708|ref|NP_617783.1| - 1.4e-82 276.4 133.7 2.5e-48 164.2 23.9 4.8 2 2 3 5 5 5 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091708|ref|NP_617783.1| - 1.7e-49 167.6 164.0 1.3e-18 67.2 24.0 5.0 2 1 3 5 5 5 4 Right handed beta helix region PKD PF00801.15 gi|20091708|ref|NP_617783.1| - 9.6e-21 73.3 14.1 3.4e-12 45.9 1.6 2.7 2 0 0 2 2 2 2 PKD domain Y_Y_Y PF07495.8 gi|20091708|ref|NP_617783.1| - 4 7.2 17.2 0.053 13.2 0.7 4.9 6 0 0 6 6 6 0 Y_Y_Y domain DUF684 PF05075.9 gi|20091709|ref|NP_617784.1| - 0.0016 17.1 3.0 0.0016 17.0 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF684) Hist_deacetyl PF00850.14 gi|20091710|ref|NP_617785.1| - 2e-64 217.8 0.0 8.9e-64 215.7 0.0 1.8 1 1 1 2 2 2 1 Histone deacetylase domain Trypan_PARP PF05887.6 gi|20091710|ref|NP_617785.1| - 0.16 11.7 8.7 0.28 11.0 6.0 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Hydantoinase_A PF01968.13 gi|20091711|ref|NP_617786.1| - 6.5e-69 232.2 5.5 7.7e-64 215.5 1.7 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20091711|ref|NP_617786.1| - 1.9e-41 141.4 0.4 5.4e-38 130.2 0.1 3.0 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|20091711|ref|NP_617786.1| - 3.5e-07 29.8 0.0 0.00013 21.3 0.0 3.5 3 1 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|20091711|ref|NP_617786.1| - 4.1e-05 22.0 0.7 0.033 12.5 0.0 2.3 2 0 0 2 2 2 2 MutL protein DDR PF08841.5 gi|20091711|ref|NP_617786.1| - 8.8e-05 21.4 6.2 0.005 15.7 0.3 3.1 3 0 0 3 3 3 2 Diol dehydratase reactivase ATPase-like domain FtsA PF14450.1 gi|20091711|ref|NP_617786.1| - 0.00026 20.7 2.5 0.78 9.5 0.0 3.3 3 0 0 3 3 3 2 Cell division protein FtsA EutA PF06277.6 gi|20091711|ref|NP_617786.1| - 0.00029 19.5 2.1 0.34 9.4 0.2 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation protein EutA MreB_Mbl PF06723.8 gi|20091711|ref|NP_617786.1| - 0.0062 15.1 0.3 0.0062 15.1 0.2 2.6 3 0 0 3 3 3 1 MreB/Mbl protein Ppx-GppA PF02541.11 gi|20091711|ref|NP_617786.1| - 0.0086 15.3 0.4 0.31 10.2 0.0 2.6 2 0 0 2 2 2 1 Ppx/GppA phosphatase family StbA PF06406.6 gi|20091711|ref|NP_617786.1| - 0.012 14.5 1.3 0.56 9.1 0.0 3.1 3 0 0 3 3 3 0 StbA protein PAS_3 PF08447.6 gi|20091712|ref|NP_617787.1| - 1.6e-38 130.7 0.6 1.4e-18 66.7 0.4 3.6 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|20091712|ref|NP_617787.1| - 1.7e-32 111.1 4.1 3.5e-32 110.0 2.3 2.1 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.1 gi|20091712|ref|NP_617787.1| - 1.5e-28 99.2 0.1 4.4e-10 39.8 0.0 4.6 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|20091712|ref|NP_617787.1| - 6.7e-27 93.6 0.0 1.7e-11 44.1 0.0 4.6 4 1 0 4 4 4 4 PAS fold PAS PF00989.19 gi|20091712|ref|NP_617787.1| - 8.1e-24 83.5 0.0 7.1e-07 29.0 0.0 4.5 4 0 0 4 4 4 4 PAS fold GAF_3 PF13492.1 gi|20091712|ref|NP_617787.1| - 2.5e-08 34.0 0.0 5.9e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|20091712|ref|NP_617787.1| - 2.4e-06 27.2 0.0 1e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|20091712|ref|NP_617787.1| - 6.7e-05 23.2 0.2 0.00015 22.0 0.1 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_8 PF13188.1 gi|20091712|ref|NP_617787.1| - 8.8e-05 22.2 0.0 0.15 11.9 0.0 4.0 4 0 0 4 4 4 1 PAS domain GAF_2 PF13185.1 gi|20091712|ref|NP_617787.1| - 0.00076 19.9 0.0 0.0017 18.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|20091712|ref|NP_617787.1| - 0.00094 19.3 0.0 0.0019 18.3 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|20091712|ref|NP_617787.1| - 0.0011 18.8 0.0 0.31 11.0 0.0 3.1 3 0 0 3 3 3 1 PAS domain FAD_binding_3 PF01494.14 gi|20091714|ref|NP_617789.1| - 1.2e-12 47.5 6.1 2.2e-07 30.2 0.9 3.7 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|20091714|ref|NP_617789.1| - 3e-10 39.7 0.1 4.3e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|20091714|ref|NP_617789.1| - 1.9e-08 33.7 0.0 3.7e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|20091714|ref|NP_617789.1| - 2.1e-08 33.4 0.7 1.9e-06 27.0 0.4 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|20091714|ref|NP_617789.1| - 6.3e-08 32.7 2.6 1.4e-06 28.3 1.8 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|20091714|ref|NP_617789.1| - 4.7e-06 26.5 0.1 1.2e-05 25.2 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|20091714|ref|NP_617789.1| - 6.9e-06 24.7 0.2 1.2e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|20091714|ref|NP_617789.1| - 0.00018 20.4 0.5 0.00032 19.7 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|20091714|ref|NP_617789.1| - 0.00021 20.3 0.1 0.017 14.0 0.0 2.3 3 0 0 3 3 3 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|20091714|ref|NP_617789.1| - 0.00032 19.4 0.3 0.079 11.5 0.3 2.9 2 1 1 3 3 3 1 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|20091714|ref|NP_617789.1| - 0.0021 16.9 1.0 0.0045 15.8 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|20091714|ref|NP_617789.1| - 0.016 15.3 0.1 0.028 14.4 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20091714|ref|NP_617789.1| - 0.018 15.4 0.9 0.097 13.0 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|20091714|ref|NP_617789.1| - 0.044 13.4 0.1 0.074 12.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|20091714|ref|NP_617789.1| - 0.088 12.6 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 ThiF family NAD_binding_7 PF13241.1 gi|20091714|ref|NP_617789.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding PAPS_reduct PF01507.14 gi|20091715|ref|NP_617790.1| - 8e-40 136.4 0.0 1.7e-39 135.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.22 gi|20091715|ref|NP_617790.1| - 4.3e-08 32.4 2.6 4.3e-08 32.4 1.8 3.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20091715|ref|NP_617790.1| - 1.1e-07 31.4 11.0 1.1e-07 31.4 7.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091715|ref|NP_617790.1| - 1.9e-06 28.0 13.7 1.9e-06 28.0 9.5 3.0 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20091715|ref|NP_617790.1| - 6.3e-06 26.4 14.0 6.3e-06 26.4 9.7 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20091715|ref|NP_617790.1| - 4e-05 23.3 0.4 4e-05 23.3 0.3 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091715|ref|NP_617790.1| - 9.7e-05 22.0 2.4 9.7e-05 22.0 1.7 3.7 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20091715|ref|NP_617790.1| - 0.00016 21.4 3.1 0.00016 21.4 2.2 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20091715|ref|NP_617790.1| - 0.0017 18.3 24.9 0.0045 16.9 10.1 3.3 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091715|ref|NP_617790.1| - 0.002 18.4 0.8 0.002 18.4 0.6 3.6 2 2 1 3 3 2 2 4Fe-4S dicluster domain NAD_synthase PF02540.12 gi|20091715|ref|NP_617790.1| - 0.0097 14.8 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Fer4_17 PF13534.1 gi|20091715|ref|NP_617790.1| - 0.011 16.0 15.4 0.044 14.1 1.3 3.3 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091715|ref|NP_617790.1| - 0.013 16.2 3.1 0.013 16.2 2.2 3.8 4 1 1 5 5 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20091715|ref|NP_617790.1| - 0.02 15.2 3.4 0.02 15.2 2.4 3.7 4 1 0 4 4 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20091715|ref|NP_617790.1| - 0.025 15.0 6.5 0.025 15.0 4.5 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain ATP_bind_3 PF01171.15 gi|20091715|ref|NP_617790.1| - 0.059 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 PP-loop family UPF0118 PF01594.11 gi|20091716|ref|NP_617791.1| - 1.4e-43 149.1 42.2 1.6e-43 148.9 29.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 tRNA-Thr_ED PF08915.6 gi|20091717|ref|NP_617792.1| - 6.4e-56 188.1 0.4 1.2e-55 187.3 0.3 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|20091717|ref|NP_617792.1| - 8.8e-24 84.0 1.5 1.5e-23 83.2 1.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|20091717|ref|NP_617792.1| - 1.9e-18 66.1 1.9 2.4e-18 65.8 0.4 1.9 2 0 0 2 2 2 1 Anticodon binding domain Heme_oxygenase PF01126.15 gi|20091717|ref|NP_617792.1| - 0.025 14.1 0.1 0.056 13.0 0.1 1.5 1 0 0 1 1 1 0 Heme oxygenase PTPlike_phytase PF14566.1 gi|20091717|ref|NP_617792.1| - 0.8 9.7 3.1 1.6 8.7 0.9 2.4 2 1 0 2 2 2 0 Inositol hexakisphosphate ResIII PF04851.10 gi|20091718|ref|NP_617793.1| - 8.1e-18 64.9 0.1 1.5e-17 64.0 0.1 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|20091718|ref|NP_617793.1| - 1e-08 34.9 0.0 2.7e-08 33.5 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|20091718|ref|NP_617793.1| - 2.8e-05 23.6 0.0 0.00029 20.3 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|20091718|ref|NP_617793.1| - 0.00042 20.4 0.1 0.0015 18.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain FA_desaturase PF00487.19 gi|20091719|ref|NP_617794.1| - 0.092 12.1 3.4 0.11 11.9 2.3 1.1 1 0 0 1 1 1 0 Fatty acid desaturase CoA_binding_3 PF13727.1 gi|20091719|ref|NP_617794.1| - 0.45 10.3 2.3 0.56 10.0 1.6 1.1 1 0 0 1 1 1 0 CoA-binding domain DUF4131 PF13567.1 gi|20091719|ref|NP_617794.1| - 2.1 7.7 14.4 0.87 8.9 6.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) APH PF01636.18 gi|20091720|ref|NP_617795.1| - 2.7e-13 50.2 0.0 3.6e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.15 gi|20091720|ref|NP_617795.1| - 1.7e-05 24.4 0.1 2.9e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Choline/ethanolamine kinase DUF4079 PF13301.1 gi|20091721|ref|NP_617796.1| - 1.8 8.5 7.5 0.27 11.2 1.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4079) DUF2781 PF10914.3 gi|20091721|ref|NP_617796.1| - 2 8.2 7.3 0.66 9.7 2.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2781) MerC PF03203.9 gi|20091721|ref|NP_617796.1| - 6.9 7.0 16.1 5.2 7.4 0.2 3.4 3 1 0 3 3 3 0 MerC mercury resistance protein Zn_protease PF05618.6 gi|20091722|ref|NP_617797.1| - 1.1e-22 80.2 0.1 2.9e-22 78.8 0.1 1.6 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|20091722|ref|NP_617797.1| - 1e-05 24.9 0.1 0.00035 19.9 0.0 2.1 1 1 0 1 1 1 1 Polypeptide deformylase TetR_N PF00440.18 gi|20091723|ref|NP_617798.1| - 6.9e-18 64.0 0.1 2.2e-17 62.3 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_AraC PF00165.18 gi|20091723|ref|NP_617798.1| - 0.016 15.0 0.1 36 4.3 0.0 3.5 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_19 PF12844.2 gi|20091723|ref|NP_617798.1| - 0.052 13.6 0.0 28 4.8 0.0 3.3 2 1 1 3 3 3 0 Helix-turn-helix domain LCM PF04072.9 gi|20091724|ref|NP_617799.1| - 9.1e-51 172.0 0.0 1.8e-50 171.0 0.0 1.4 2 0 0 2 2 2 1 Leucine carboxyl methyltransferase LCM PF04072.9 gi|20091725|ref|NP_617800.1| - 6.4e-49 166.0 0.0 8e-49 165.6 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Methyltransf_11 PF08241.7 gi|20091726|ref|NP_617801.1| - 3.2e-11 43.5 0.0 5.8e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091726|ref|NP_617801.1| - 3.7e-10 39.6 0.0 5.4e-10 39.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20091726|ref|NP_617801.1| - 3.3e-08 33.8 0.0 1.4e-07 31.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091726|ref|NP_617801.1| - 4.8e-06 26.8 0.0 9.9e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091726|ref|NP_617801.1| - 8.6e-05 22.3 0.0 0.0001 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091726|ref|NP_617801.1| - 0.0014 19.1 0.0 0.0089 16.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091726|ref|NP_617801.1| - 0.012 14.7 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|20091727|ref|NP_617802.1| - 0.0012 19.3 0.0 0.052 14.0 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Transposase_20 PF02371.11 gi|20091728|ref|NP_617803.1| - 4.9e-30 103.4 0.0 1.2e-29 102.2 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|20091728|ref|NP_617803.1| - 2.5e-25 88.8 0.0 4.4e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Transposase CCP_MauG PF03150.9 gi|20091729|ref|NP_617804.1| - 1.3e-48 165.3 0.0 1.4e-45 155.4 0.0 2.6 1 1 1 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.16 gi|20091729|ref|NP_617804.1| - 0.00088 20.0 1.7 0.31 11.8 0.0 3.5 2 2 0 2 2 2 1 Cytochrome c Paired_CXXCH_1 PF09699.5 gi|20091729|ref|NP_617804.1| - 0.0023 17.4 0.9 1.5 8.3 0.1 2.3 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_CBB3 PF13442.1 gi|20091729|ref|NP_617804.1| - 0.0038 17.3 0.0 4 7.6 0.0 3.1 3 0 0 3 3 3 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.1 gi|20091729|ref|NP_617804.1| - 0.095 12.3 0.0 2.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|20091729|ref|NP_617804.1| - 0.14 12.2 0.0 13 5.8 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c554 and c-prime POR PF01558.13 gi|20091730|ref|NP_617805.1| - 8.6e-40 136.4 1.6 9.5e-40 136.3 0.3 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|20091730|ref|NP_617805.1| - 3.2e-23 82.0 0.2 6.3e-23 81.0 0.1 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|20091730|ref|NP_617805.1| - 0.2 10.3 0.7 0.46 9.1 0.5 1.5 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.14 gi|20091731|ref|NP_617806.1| - 2.5e-60 203.8 0.0 3.1e-60 203.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|20091731|ref|NP_617806.1| - 5.4e-05 23.1 0.0 9.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|20091731|ref|NP_617806.1| - 0.00016 21.2 0.1 0.00023 20.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fumerase PF05681.9 gi|20091731|ref|NP_617806.1| - 0.04 12.9 0.0 0.06 12.4 0.0 1.2 1 0 0 1 1 1 0 Fumarate hydratase (Fumerase) OTCace PF00185.19 gi|20091731|ref|NP_617806.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fer4_7 PF12838.2 gi|20091732|ref|NP_617807.1| - 1.4e-10 41.3 7.8 1.9e-10 40.9 5.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20091732|ref|NP_617807.1| - 1.5e-07 31.1 17.4 7.5e-07 28.8 5.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20091732|ref|NP_617807.1| - 1.5e-07 31.1 5.3 2.4e-07 30.5 3.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091732|ref|NP_617807.1| - 3.8e-06 27.0 8.5 8.3e-06 25.9 5.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20091732|ref|NP_617807.1| - 5e-06 26.4 7.5 0.018 15.3 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20091732|ref|NP_617807.1| - 6.1e-06 26.4 7.0 0.011 16.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091732|ref|NP_617807.1| - 8.5e-06 25.3 11.7 0.0027 17.5 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20091732|ref|NP_617807.1| - 1.2e-05 24.6 13.0 0.00014 21.3 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20091732|ref|NP_617807.1| - 1.6e-05 24.5 9.5 0.004 16.9 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20091732|ref|NP_617807.1| - 3.9e-05 23.5 8.4 7.9e-05 22.6 5.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091732|ref|NP_617807.1| - 0.00042 20.6 4.6 0.28 11.6 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091732|ref|NP_617807.1| - 0.002 18.8 10.5 0.048 14.4 7.6 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|20091732|ref|NP_617807.1| - 0.0053 17.2 8.6 0.26 11.8 0.5 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20091732|ref|NP_617807.1| - 0.0064 16.9 16.6 0.071 13.6 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20091732|ref|NP_617807.1| - 0.058 13.7 12.4 0.38 11.1 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain P12 PF12669.2 gi|20091732|ref|NP_617807.1| - 0.067 13.4 0.3 0.067 13.4 0.2 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family DUF678 PF05077.7 gi|20091732|ref|NP_617807.1| - 0.12 12.3 1.5 2 8.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) AMP-binding PF00501.23 gi|20091733|ref|NP_617808.1| - 5.3e-79 265.5 0.0 6.4e-79 265.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|20091733|ref|NP_617808.1| - 2.3e-19 70.0 0.4 5.5e-19 68.9 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Sed5p PF11416.3 gi|20091734|ref|NP_617809.1| - 9.9e-07 28.0 5.1 4.6 6.7 0.0 4.9 5 0 0 5 5 5 4 Integral membrane protein Sed5p TNFR_c6 PF00020.13 gi|20091734|ref|NP_617809.1| - 0.26 11.3 9.7 54 3.9 0.1 4.5 4 0 0 4 4 4 0 TNFR/NGFR cysteine-rich region Tet_res_leader PF08050.7 gi|20091734|ref|NP_617809.1| - 5.5 6.7 12.6 63 3.3 0.1 4.3 4 0 0 4 4 4 0 Tetracycline resistance leader peptide Cupin_2 PF07883.6 gi|20091735|ref|NP_617810.1| - 7.7e-17 60.5 0.3 2.2e-16 59.0 0.1 1.8 1 1 1 2 2 2 1 Cupin domain HTH_19 PF12844.2 gi|20091735|ref|NP_617810.1| - 1.2e-09 38.0 0.0 1.9e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|20091735|ref|NP_617810.1| - 6.5e-09 35.5 0.0 1.2e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|20091735|ref|NP_617810.1| - 2.5e-07 30.7 0.0 4e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.13 gi|20091735|ref|NP_617810.1| - 0.00093 18.8 0.1 0.0019 17.8 0.0 1.5 1 1 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|20091735|ref|NP_617810.1| - 0.0014 18.3 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|20091735|ref|NP_617810.1| - 0.008 15.5 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|20091735|ref|NP_617810.1| - 0.0087 16.0 0.0 0.02 14.8 0.0 1.6 1 1 0 1 1 1 1 Mif2/CENP-C like HTH_DeoR PF08220.7 gi|20091735|ref|NP_617810.1| - 0.083 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain NosD PF05048.8 gi|20091736|ref|NP_617811.1| - 2.5e-39 134.8 18.8 2.5e-39 134.8 13.0 2.0 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|20091736|ref|NP_617811.1| - 2.8e-26 91.0 0.7 8.6e-15 54.2 0.8 2.6 2 0 0 2 2 2 2 PKD domain Beta_helix PF13229.1 gi|20091736|ref|NP_617811.1| - 6.3e-09 35.7 15.8 2.3e-08 33.9 10.9 2.0 1 0 0 1 1 1 1 Right handed beta helix region Phosphodiest PF01663.17 gi|20091737|ref|NP_617812.1| - 9.8e-16 58.0 0.1 1.4e-14 54.2 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|20091737|ref|NP_617812.1| - 9.5e-12 44.7 0.0 3.4e-10 39.6 0.0 2.4 2 1 0 3 3 3 1 Sulfatase Metalloenzyme PF01676.13 gi|20091737|ref|NP_617812.1| - 1.2e-08 34.6 0.1 1.7e-07 30.8 0.1 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily Tox-HDC PF15656.1 gi|20091737|ref|NP_617812.1| - 0.016 15.3 0.1 0.031 14.4 0.1 1.4 1 0 0 1 1 1 0 Toxin with a H, D/N and C signature BatA PF07584.6 gi|20091738|ref|NP_617813.1| - 0.12 12.5 0.2 1.7 8.9 0.0 2.5 3 0 0 3 3 3 0 Aerotolerance regulator N-terminal PepSY PF03413.14 gi|20091739|ref|NP_617814.1| - 0.0016 19.0 3.2 0.0035 17.9 2.2 1.6 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain ODV-E18 PF10717.4 gi|20091740|ref|NP_617815.1| - 0.0068 15.8 0.3 0.0082 15.5 0.2 1.1 1 0 0 1 1 1 1 Occlusion-derived virus envelope protein ODV-E18 DUF4577 PF15145.1 gi|20091740|ref|NP_617815.1| - 0.0097 15.8 0.1 0.01 15.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4577) HN PF00423.14 gi|20091740|ref|NP_617815.1| - 0.034 12.4 0.1 0.035 12.3 0.0 1.0 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase Syntaxin PF00804.20 gi|20091740|ref|NP_617815.1| - 0.043 13.9 0.0 0.044 13.9 0.0 1.1 1 0 0 1 1 1 0 Syntaxin DUF948 PF06103.6 gi|20091740|ref|NP_617815.1| - 0.059 13.2 0.2 0.069 13.0 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Pox_LP_H2 PF03356.10 gi|20091740|ref|NP_617815.1| - 0.081 12.6 0.0 0.086 12.5 0.0 1.1 1 0 0 1 1 1 0 Viral late protein H2 Peptidase_S49_N PF08496.5 gi|20091740|ref|NP_617815.1| - 0.094 12.5 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal DUF2730 PF10805.3 gi|20091740|ref|NP_617815.1| - 0.1 12.3 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) MtrF PF09472.5 gi|20091740|ref|NP_617815.1| - 4.6 6.5 8.4 13 5.0 0.1 2.2 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.8 gi|20091740|ref|NP_617815.1| - 7.9 6.2 8.2 6.3 6.5 0.1 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G HTH_5 PF01022.15 gi|20091741|ref|NP_617816.1| - 8.5e-14 50.9 0.3 1.2e-13 50.4 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20091741|ref|NP_617816.1| - 7.1e-12 44.9 0.4 1e-11 44.4 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|20091741|ref|NP_617816.1| - 2.2e-07 30.4 0.2 3e-07 30.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|20091741|ref|NP_617816.1| - 9.1e-07 28.4 0.2 1.1e-06 28.1 0.2 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|20091741|ref|NP_617816.1| - 2.4e-06 27.2 0.8 1.6e-05 24.6 0.5 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|20091741|ref|NP_617816.1| - 8.6e-06 25.0 0.5 5.1e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|20091741|ref|NP_617816.1| - 1.4e-05 24.6 0.0 2.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|20091741|ref|NP_617816.1| - 1.7e-05 24.3 0.2 3.1e-05 23.5 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|20091741|ref|NP_617816.1| - 0.00053 19.9 0.2 0.00071 19.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|20091741|ref|NP_617816.1| - 0.0035 17.4 0.1 0.005 16.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|20091741|ref|NP_617816.1| - 0.0051 16.9 0.1 0.0075 16.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|20091741|ref|NP_617816.1| - 0.0059 16.7 0.0 0.19 11.9 0.0 2.2 1 1 1 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.1 gi|20091741|ref|NP_617816.1| - 0.019 15.0 0.1 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF2250 PF10007.4 gi|20091741|ref|NP_617816.1| - 0.028 14.3 0.3 0.036 13.9 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.11 gi|20091741|ref|NP_617816.1| - 0.034 13.6 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_41 PF14502.1 gi|20091741|ref|NP_617816.1| - 0.035 13.7 0.0 0.075 12.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HxlR PF01638.12 gi|20091741|ref|NP_617816.1| - 0.039 13.5 0.2 0.05 13.2 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.16 gi|20091741|ref|NP_617816.1| - 0.065 12.6 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|20091741|ref|NP_617816.1| - 0.078 12.7 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Mga PF05043.8 gi|20091741|ref|NP_617816.1| - 0.08 13.2 0.3 0.22 11.8 0.1 1.8 1 1 1 2 2 2 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.14 gi|20091741|ref|NP_617816.1| - 0.11 12.4 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Cupin_2 PF07883.6 gi|20091742|ref|NP_617817.1| - 1.6e-10 40.3 0.4 4.5e-10 38.8 0.0 1.9 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|20091742|ref|NP_617817.1| - 5.8e-08 32.2 0.0 1.1e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|20091742|ref|NP_617817.1| - 9.1e-05 22.1 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|20091742|ref|NP_617817.1| - 0.00069 19.2 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cache_2 PF08269.6 gi|20091742|ref|NP_617817.1| - 0.0011 18.9 0.0 0.0025 17.7 0.0 1.7 1 1 0 1 1 1 1 Cache domain Cupin_3 PF05899.7 gi|20091742|ref|NP_617817.1| - 0.021 14.1 0.0 0.066 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF861) GPI PF06560.6 gi|20091742|ref|NP_617817.1| - 0.11 11.5 0.1 0.22 10.4 0.0 1.6 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) NAS PF03059.11 gi|20091743|ref|NP_617818.1| - 3.4e-47 160.9 0.0 4.7e-47 160.4 0.0 1.2 1 0 0 1 1 1 1 Nicotianamine synthase protein DUF2258 PF10015.4 gi|20091743|ref|NP_617818.1| - 0.014 15.1 0.1 0.075 12.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2258) CNRIP1 PF15043.1 gi|20091743|ref|NP_617818.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 CB1 cannabinoid receptor-interacting protein 1 CCP_MauG PF03150.9 gi|20091744|ref|NP_617819.1| - 2.5e-37 128.6 0.0 5.8e-35 120.9 0.0 2.7 2 1 0 2 2 2 1 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.16 gi|20091744|ref|NP_617819.1| - 0.00012 22.8 0.3 0.73 10.6 0.2 3.6 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|20091744|ref|NP_617819.1| - 0.021 14.9 0.0 12 6.1 0.0 3.1 3 0 0 3 3 3 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.1 gi|20091744|ref|NP_617819.1| - 0.042 13.4 0.0 5.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 Paired_CXXCH_1 PF09699.5 gi|20091744|ref|NP_617819.1| - 0.06 12.8 1.5 8.5 5.9 0.0 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) PKD PF00801.15 gi|20091745|ref|NP_617820.1| - 3.9e-12 45.7 1.9 3.9e-12 45.7 1.3 3.3 2 0 0 2 2 2 1 PKD domain DUF1398 PF07166.6 gi|20091745|ref|NP_617820.1| - 0.022 14.6 1.8 6.9 6.5 0.1 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1398) PQQ_3 PF13570.1 gi|20091745|ref|NP_617820.1| - 0.042 14.1 13.0 7.8 6.9 0.1 5.5 5 0 0 5 5 5 0 PQQ-like domain Acyl-CoA_dh_M PF02770.14 gi|20091745|ref|NP_617820.1| - 1.2 8.6 15.9 7.2 6.2 0.1 5.3 4 1 1 5 5 5 0 Acyl-CoA dehydrogenase, middle domain MULE PF10551.4 gi|20091747|ref|NP_617822.1| - 9.6e-13 48.1 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091747|ref|NP_617822.1| - 0.021 13.3 0.0 0.035 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091747|ref|NP_617822.1| - 0.028 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20091747|ref|NP_617822.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091747|ref|NP_617822.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20091747|ref|NP_617822.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20091747|ref|NP_617822.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091747|ref|NP_617822.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger DUF2667 PF10868.3 gi|20091748|ref|NP_617823.1| - 0.25 11.7 7.3 0.36 11.2 4.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2667) Aha1_N PF09229.6 gi|20091748|ref|NP_617823.1| - 0.3 10.9 1.5 5.3 6.8 1.0 2.1 1 1 0 1 1 1 0 Activator of Hsp90 ATPase, N-terminal Metallophos_2 PF12850.2 gi|20091749|ref|NP_617824.1| - 2.8e-07 30.4 0.0 3.9e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20091749|ref|NP_617824.1| - 0.0023 17.3 0.9 0.18 11.1 0.2 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase rve PF00665.21 gi|20091750|ref|NP_617825.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091750|ref|NP_617825.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20091750|ref|NP_617825.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20091750|ref|NP_617825.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091750|ref|NP_617825.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20091750|ref|NP_617825.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Abhydrolase_6 PF12697.2 gi|20091752|ref|NP_617827.1| - 3e-19 69.8 0.0 4.1e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|20091752|ref|NP_617827.1| - 2.4e-17 63.0 0.0 3.2e-10 39.9 0.0 2.3 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|20091752|ref|NP_617827.1| - 2.5e-13 49.7 0.0 3.7e-07 29.5 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|20091752|ref|NP_617827.1| - 4.9e-10 39.2 0.0 6.7e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.6 gi|20091752|ref|NP_617827.1| - 5.9e-10 39.2 0.0 5.4e-07 29.5 0.0 2.4 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.13 gi|20091752|ref|NP_617827.1| - 2.3e-07 30.3 0.0 0.006 15.8 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|20091752|ref|NP_617827.1| - 3.6e-06 26.7 0.0 2.1e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|20091752|ref|NP_617827.1| - 8.7e-06 25.4 0.0 0.0002 20.9 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|20091752|ref|NP_617827.1| - 0.00043 18.8 0.0 0.014 13.9 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DUF1100 PF06500.6 gi|20091752|ref|NP_617827.1| - 0.0012 17.4 0.0 0.0023 16.5 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Hydrolase_4 PF12146.3 gi|20091752|ref|NP_617827.1| - 0.021 14.6 0.1 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Putative lysophospholipase PGAP1 PF07819.8 gi|20091752|ref|NP_617827.1| - 0.045 13.3 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 PGAP1-like protein Acyl_transf_2 PF02273.10 gi|20091752|ref|NP_617827.1| - 0.057 12.4 0.0 0.098 11.6 0.0 1.3 1 0 0 1 1 1 0 Acyl transferase FSH1 PF03959.8 gi|20091752|ref|NP_617827.1| - 0.061 12.7 0.0 0.75 9.2 0.0 2.1 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Lipase_3 PF01764.20 gi|20091752|ref|NP_617827.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) DUF676 PF05057.9 gi|20091752|ref|NP_617827.1| - 0.097 11.9 0.6 0.73 9.0 0.0 2.1 1 1 1 2 2 2 0 Putative serine esterase (DUF676) Esterase_phd PF10503.4 gi|20091752|ref|NP_617827.1| - 0.12 11.6 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase PhoU_div PF01865.11 gi|20091753|ref|NP_617828.1| - 1e-51 175.1 1.3 1.2e-51 174.9 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|20091753|ref|NP_617828.1| - 0.002 18.5 0.7 1.6 9.2 0.1 2.4 2 1 0 2 2 2 2 PhoU domain PHO4 PF01384.15 gi|20091754|ref|NP_617829.1| - 5.7e-103 343.9 38.7 6.8e-103 343.7 26.9 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF3318 PF11780.3 gi|20091754|ref|NP_617829.1| - 0.44 10.1 4.5 1.1 8.7 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) Nitro_FeMo-Co PF02579.12 gi|20091755|ref|NP_617830.1| - 8.6e-21 73.8 0.0 1.1e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor HTH_29 PF13551.1 gi|20091756|ref|NP_617831.1| - 1e-20 73.9 0.1 1.3e-20 73.6 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|20091756|ref|NP_617831.1| - 2.2e-10 41.2 0.2 6.5e-10 39.6 0.0 1.7 1 1 1 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|20091756|ref|NP_617831.1| - 2.1e-09 36.7 0.0 5.7e-09 35.3 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091756|ref|NP_617831.1| - 1.6e-07 31.1 0.0 3e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|20091756|ref|NP_617831.1| - 0.0035 16.9 0.1 0.52 10.0 0.1 2.3 1 1 1 2 2 2 2 Sugar-specific transcriptional regulator TrmB LZ_Tnp_IS481 PF13011.1 gi|20091756|ref|NP_617831.1| - 0.087 13.1 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DDE_3 PF13358.1 gi|20091757|ref|NP_617832.1| - 0.13 11.9 0.0 0.14 11.8 0.0 1.0 1 0 0 1 1 1 0 DDE superfamily endonuclease ABC_tran PF00005.22 gi|20091758|ref|NP_617833.1| - 3.9e-33 114.6 0.1 6.5e-33 113.9 0.1 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|20091758|ref|NP_617833.1| - 1.2e-07 31.4 19.5 1.9e-07 30.7 13.5 1.4 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|20091758|ref|NP_617833.1| - 2.6e-07 30.0 4.4 3.3e-06 26.4 0.2 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|20091758|ref|NP_617833.1| - 0.00016 20.8 0.0 0.00028 20.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20091758|ref|NP_617833.1| - 0.00017 22.3 0.4 0.00053 20.7 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20091758|ref|NP_617833.1| - 0.0016 17.9 0.2 0.0041 16.6 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|20091758|ref|NP_617833.1| - 0.0017 18.4 26.0 0.015 15.2 7.4 4.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20091758|ref|NP_617833.1| - 0.0031 17.6 1.7 0.034 14.2 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20091758|ref|NP_617833.1| - 0.0056 16.9 0.0 0.016 15.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|20091758|ref|NP_617833.1| - 0.043 12.9 0.0 0.087 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|20091758|ref|NP_617833.1| - 0.044 13.2 0.1 0.08 12.4 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|20091758|ref|NP_617833.1| - 0.053 13.0 0.2 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|20091758|ref|NP_617833.1| - 0.063 13.1 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SbcCD_C PF13558.1 gi|20091758|ref|NP_617833.1| - 0.07 13.0 0.8 0.45 10.4 0.2 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|20091758|ref|NP_617833.1| - 0.1 12.3 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|20091758|ref|NP_617833.1| - 0.12 11.8 0.6 0.37 10.2 0.4 1.8 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|20091758|ref|NP_617833.1| - 0.13 12.4 2.8 2.6 8.2 1.9 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|20091758|ref|NP_617833.1| - 0.15 11.6 1.0 0.51 9.8 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|20091758|ref|NP_617833.1| - 0.28 11.4 6.7 0.28 11.4 3.8 1.7 1 1 0 1 1 1 0 AAA domain rve PF00665.21 gi|20091759|ref|NP_617834.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091759|ref|NP_617834.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20091759|ref|NP_617834.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20091759|ref|NP_617834.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091759|ref|NP_617834.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20091759|ref|NP_617834.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Beta-lactamase PF00144.19 gi|20091760|ref|NP_617835.1| - 2.3e-06 26.8 0.0 3.3e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF3471 PF11954.3 gi|20091760|ref|NP_617835.1| - 0.002 17.9 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3471) DDE_Tnp_1 PF01609.16 gi|20091761|ref|NP_617836.1| - 1.4e-09 37.8 0.0 4.4e-09 36.2 0.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|20091761|ref|NP_617836.1| - 0.0084 15.7 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|20091761|ref|NP_617836.1| - 0.031 14.0 3.6 0.08 12.6 0.0 2.4 2 1 0 2 2 2 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20091762|ref|NP_617837.1| - 8.9e-06 25.3 0.0 1.9e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain HTH_Tnp_Tc3_1 PF11427.3 gi|20091763|ref|NP_617838.1| - 0.083 12.5 0.1 3.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Tc3 transposase DUF1654 PF07867.6 gi|20091764|ref|NP_617839.1| - 0.082 12.2 1.0 19 4.7 0.1 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1654) HTH_23 PF13384.1 gi|20091765|ref|NP_617840.1| - 1.5e-06 27.6 0.0 2.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20091765|ref|NP_617840.1| - 7.4e-06 25.4 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20091765|ref|NP_617840.1| - 9.4e-06 25.5 0.1 1.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091765|ref|NP_617840.1| - 0.00051 20.1 0.0 0.00077 19.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20091765|ref|NP_617840.1| - 0.0037 16.7 0.2 0.022 14.3 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091765|ref|NP_617840.1| - 0.0047 16.3 0.0 0.011 15.1 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20091765|ref|NP_617840.1| - 0.0087 15.8 2.9 0.02 14.7 2.0 1.6 1 0 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 HTH_Tnp_1 PF01527.15 gi|20091765|ref|NP_617840.1| - 0.0089 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Transposase DUF2387 PF09526.5 gi|20091765|ref|NP_617840.1| - 0.054 13.4 0.8 0.11 12.4 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1 PF03811.8 gi|20091765|ref|NP_617840.1| - 0.056 12.9 9.2 0.095 12.2 6.3 1.4 1 0 0 1 1 1 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|20091765|ref|NP_617840.1| - 0.065 13.0 7.3 0.1 12.4 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4200 PF13863.1 gi|20091765|ref|NP_617840.1| - 0.077 12.9 0.2 0.12 12.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF1670 PF07900.6 gi|20091765|ref|NP_617840.1| - 0.1 11.7 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Rubredoxin PF00301.15 gi|20091765|ref|NP_617840.1| - 0.16 11.8 2.3 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|20091765|ref|NP_617840.1| - 0.19 11.7 2.1 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Mu-like_Com PF10122.4 gi|20091765|ref|NP_617840.1| - 3.1 6.9 7.3 5.8 6.0 4.1 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20091765|ref|NP_617840.1| - 5.1 6.8 6.9 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DDE_Tnp_1 PF01609.16 gi|20091766|ref|NP_617841.1| - 3.5e-05 23.4 3.5 5.4e-05 22.8 2.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|20091766|ref|NP_617841.1| - 0.039 14.1 4.1 0.049 13.8 2.6 1.4 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|20091766|ref|NP_617841.1| - 0.043 13.5 0.6 0.051 13.3 0.4 1.2 1 0 0 1 1 1 0 Transposase DDE domain OSR1_C PF12202.3 gi|20091766|ref|NP_617841.1| - 1.1 8.9 5.5 2 8.1 3.4 1.7 1 1 0 1 1 1 0 Oxidative-stress-responsive kinase 1 C terminal TetR_N PF00440.18 gi|20091767|ref|NP_617842.1| - 2.8e-18 65.2 0.1 4.7e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family UPF0122 PF04297.9 gi|20091767|ref|NP_617842.1| - 0.12 12.3 0.1 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF3795 PF12675.2 gi|20091768|ref|NP_617843.1| - 1.2e-19 70.2 4.9 1.5e-19 69.8 3.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) ThiS PF02597.15 gi|20091769|ref|NP_617844.1| - 0.0022 18.3 0.2 0.0028 18.0 0.1 1.1 1 0 0 1 1 1 1 ThiS family E1-E2_ATPase PF00122.15 gi|20091769|ref|NP_617844.1| - 0.1 11.6 0.2 0.1 11.6 0.1 1.1 1 0 0 1 1 1 0 E1-E2 ATPase TetR_N PF00440.18 gi|20091770|ref|NP_617845.1| - 9.6e-19 66.7 0.0 1.6e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|20091770|ref|NP_617845.1| - 0.0018 18.2 0.0 0.0035 17.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial transcriptional repressor HTH_3 PF01381.17 gi|20091770|ref|NP_617845.1| - 0.005 16.6 0.0 0.016 15.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_22 PF13309.1 gi|20091770|ref|NP_617845.1| - 0.0052 16.5 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_Tnp_1_2 PF13022.1 gi|20091770|ref|NP_617845.1| - 0.0057 16.4 0.0 0.0076 16.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_7 PF02796.10 gi|20091770|ref|NP_617845.1| - 0.0082 15.9 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Tnp_4 PF13613.1 gi|20091770|ref|NP_617845.1| - 0.015 14.7 0.0 0.034 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_17 PF12728.2 gi|20091770|ref|NP_617845.1| - 0.025 14.8 0.0 0.059 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|20091770|ref|NP_617845.1| - 0.028 13.9 0.0 0.26 10.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|20091770|ref|NP_617845.1| - 0.059 12.5 0.0 0.59 9.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|20091770|ref|NP_617845.1| - 0.068 12.8 0.0 0.18 11.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.7 gi|20091770|ref|NP_617845.1| - 0.12 11.9 0.0 0.41 10.3 0.0 1.8 2 0 0 2 2 2 0 HTH domain LCM PF04072.9 gi|20091771|ref|NP_617846.1| - 4.7e-50 169.6 0.0 8.2e-50 168.8 0.0 1.4 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase DUF2065 PF09838.4 gi|20091771|ref|NP_617846.1| - 0.034 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2065) Amidohydro_3 PF07969.6 gi|20091772|ref|NP_617847.1| - 2.6e-87 293.6 0.0 3.1e-87 293.4 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20091772|ref|NP_617847.1| - 4.2e-10 39.2 0.0 8.4e-09 35.1 0.0 2.7 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|20091772|ref|NP_617847.1| - 6.4e-07 29.6 0.1 0.017 15.1 0.0 3.3 2 1 1 3 3 3 3 Amidohydrolase Amidohydro_1 PF01979.15 gi|20091772|ref|NP_617847.1| - 5e-06 26.3 0.5 0.011 15.4 0.2 3.0 2 1 0 2 2 2 2 Amidohydrolase family DDE_Tnp_ISL3 PF01610.12 gi|20091773|ref|NP_617848.1| - 8.1e-31 107.4 4.2 9.4e-31 107.2 2.9 1.0 1 0 0 1 1 1 1 Transposase HSCB_C PF07743.8 gi|20091773|ref|NP_617848.1| - 0.049 14.0 0.2 0.099 13.1 0.1 1.4 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain ApoA-II PF04711.8 gi|20091773|ref|NP_617848.1| - 0.067 13.0 0.0 0.15 11.9 0.0 1.7 1 1 0 1 1 1 0 Apolipoprotein A-II (ApoA-II) TrmB PF01978.14 gi|20091774|ref|NP_617849.1| - 0.007 16.0 0.1 0.012 15.2 0.0 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB NosD PF05048.8 gi|20091775|ref|NP_617850.1| - 5.5e-21 74.8 1.6 7.6e-21 74.3 1.1 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) DUF1670 PF07900.6 gi|20091776|ref|NP_617851.1| - 6.9e-98 326.2 4.8 8.1e-98 326.0 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20091776|ref|NP_617851.1| - 1.7e-06 27.4 0.1 0.66 9.7 0.0 4.0 3 1 1 4 4 4 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20091776|ref|NP_617851.1| - 8.5e-05 21.9 0.6 2.5 7.6 0.0 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20091776|ref|NP_617851.1| - 0.00027 20.6 0.2 0.39 10.5 0.0 2.9 1 1 2 3 3 3 2 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|20091776|ref|NP_617851.1| - 0.00036 20.7 0.1 1.8 8.8 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20091776|ref|NP_617851.1| - 0.00067 18.9 0.0 0.56 9.6 0.0 3.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|20091776|ref|NP_617851.1| - 0.0012 18.3 0.2 0.0089 15.5 0.2 2.3 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_5 PF01022.15 gi|20091776|ref|NP_617851.1| - 0.0012 18.4 0.2 0.14 11.8 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|20091776|ref|NP_617851.1| - 0.0055 16.8 0.1 13 5.9 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|20091776|ref|NP_617851.1| - 0.015 15.2 1.2 5 7.1 0.2 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|20091776|ref|NP_617851.1| - 0.022 14.3 0.2 11 5.7 0.0 3.0 3 0 0 3 3 3 0 HTH domain HTH_38 PF13936.1 gi|20091776|ref|NP_617851.1| - 0.03 13.8 1.2 2.7 7.6 0.1 3.2 3 1 1 4 4 4 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|20091776|ref|NP_617851.1| - 0.041 13.6 0.2 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_10 PF04967.7 gi|20091776|ref|NP_617851.1| - 0.069 12.7 0.1 0.88 9.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain KorB PF08535.5 gi|20091776|ref|NP_617851.1| - 0.07 13.2 0.0 0.28 11.3 0.0 2.1 1 0 0 1 1 1 0 KorB domain DUF1670 PF07900.6 gi|20091777|ref|NP_617852.1| - 4.1e-89 297.5 0.3 5e-89 297.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_24 PF13412.1 gi|20091777|ref|NP_617852.1| - 0.0003 20.1 0.2 0.0021 17.4 0.2 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20091777|ref|NP_617852.1| - 0.0012 18.8 0.0 0.037 14.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20091777|ref|NP_617852.1| - 0.0019 17.8 0.0 9.3 6.0 0.0 3.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_29 PF13551.1 gi|20091777|ref|NP_617852.1| - 0.0019 18.2 0.1 0.35 11.0 0.0 3.0 1 1 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|20091777|ref|NP_617852.1| - 0.0022 17.5 0.8 0.0089 15.6 0.1 2.3 2 1 1 3 3 3 1 HTH domain HTH_17 PF12728.2 gi|20091777|ref|NP_617852.1| - 0.013 15.7 0.1 0.28 11.4 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20091777|ref|NP_617852.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|20091777|ref|NP_617852.1| - 0.017 14.7 0.1 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|20091777|ref|NP_617852.1| - 0.036 14.0 0.4 1.4 9.0 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091777|ref|NP_617852.1| - 0.036 13.5 1.5 8.4 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20091777|ref|NP_617852.1| - 0.055 13.0 1.3 4.1 7.0 0.0 3.5 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) MarR PF01047.17 gi|20091777|ref|NP_617852.1| - 0.062 13.0 0.1 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|20091777|ref|NP_617852.1| - 0.068 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|20091777|ref|NP_617852.1| - 0.16 11.5 2.3 0.18 11.3 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain ETF_QO PF05187.8 gi|20091778|ref|NP_617853.1| - 8e-05 22.5 0.5 2.6 8.0 0.0 3.5 3 0 0 3 3 3 3 Electron transfer flavoprotein-ubiquinone oxidoreductase SH3_8 PF13457.1 gi|20091778|ref|NP_617853.1| - 0.045 13.9 22.2 1.8 8.7 1.1 4.1 4 0 0 4 4 4 0 SH3-like domain DUF756 PF05506.7 gi|20091778|ref|NP_617853.1| - 7.4 7.1 9.5 37 4.8 0.7 4.1 2 1 1 3 3 3 0 Domain of unknown function (DUF756) SDF PF00375.13 gi|20091779|ref|NP_617854.1| - 6.4e-120 400.4 47.4 7.3e-120 400.2 32.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family AFOR_C PF01314.13 gi|20091780|ref|NP_617855.1| - 2.7e-71 240.2 0.3 3.6e-71 239.8 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|20091780|ref|NP_617855.1| - 3.6e-58 196.2 0.0 6.2e-58 195.4 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fer4 PF00037.22 gi|20091781|ref|NP_617856.1| - 7.5e-14 50.6 35.7 1.2e-05 24.6 3.4 5.1 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20091781|ref|NP_617856.1| - 9.2e-14 51.5 23.0 0.00016 21.9 5.7 3.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20091781|ref|NP_617856.1| - 1.6e-10 40.4 36.7 0.00021 21.0 2.2 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20091781|ref|NP_617856.1| - 2.5e-10 40.4 26.6 8e-05 22.8 6.2 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20091781|ref|NP_617856.1| - 2e-09 37.2 12.6 2e-09 37.2 8.8 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20091781|ref|NP_617856.1| - 1.5e-08 34.3 26.6 0.00057 19.6 5.7 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091781|ref|NP_617856.1| - 2.7e-08 33.2 36.9 0.00052 19.7 1.9 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20091781|ref|NP_617856.1| - 4.4e-08 32.7 29.2 0.006 16.3 9.4 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20091781|ref|NP_617856.1| - 8e-08 32.9 26.1 0.0032 18.1 1.7 4.5 2 2 3 5 5 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20091781|ref|NP_617856.1| - 4.1e-06 26.7 24.6 0.05 13.6 10.8 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20091781|ref|NP_617856.1| - 6.3e-06 26.0 33.6 0.0018 18.4 0.8 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20091781|ref|NP_617856.1| - 2e-05 24.8 25.7 0.12 12.7 0.7 3.5 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20091781|ref|NP_617856.1| - 0.0029 18.0 48.0 0.11 13.1 4.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20091781|ref|NP_617856.1| - 0.062 13.8 26.1 0.079 13.5 2.6 4.0 3 2 2 5 5 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|20091781|ref|NP_617856.1| - 2.1 8.8 36.3 0.47 10.9 2.3 4.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain DDE_Tnp_1 PF01609.16 gi|20091783|ref|NP_617858.1| - 1.3e-12 47.7 1.7 8.1e-12 45.1 1.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain GATase PF00117.23 gi|20091784|ref|NP_617859.1| - 1.5e-20 73.5 0.0 1.9e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I HTS PF04204.11 gi|20091784|ref|NP_617859.1| - 6.7e-06 25.0 0.0 1.1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|20091784|ref|NP_617859.1| - 8.6e-06 25.4 0.0 1.9e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|20091784|ref|NP_617859.1| - 0.00055 19.4 0.0 0.0015 17.9 0.0 1.8 2 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|20091784|ref|NP_617859.1| - 0.084 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family HAD_2 PF13419.1 gi|20091785|ref|NP_617860.1| - 1.7e-23 83.7 0.0 2.6e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|20091785|ref|NP_617860.1| - 9.9e-11 42.4 0.6 6.8e-10 39.7 0.4 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20091785|ref|NP_617860.1| - 9.7e-09 34.8 0.0 1.9e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|20091785|ref|NP_617860.1| - 2.8e-06 27.6 0.4 3.8e-06 27.2 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CaKB PF03185.10 gi|20091785|ref|NP_617860.1| - 0.038 13.3 0.2 0.07 12.5 0.0 1.5 2 0 0 2 2 2 0 Calcium-activated potassium channel, beta subunit NAD_binding_8 PF13450.1 gi|20091786|ref|NP_617861.1| - 3.7e-18 65.3 0.1 7.4e-18 64.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|20091786|ref|NP_617861.1| - 1.4e-17 63.9 0.0 7.1e-17 61.6 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.19 gi|20091786|ref|NP_617861.1| - 6.4e-12 45.0 0.2 1.8e-09 36.9 0.2 2.7 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|20091786|ref|NP_617861.1| - 8.4e-10 38.0 0.1 2.2e-07 30.1 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|20091786|ref|NP_617861.1| - 2.1e-09 36.9 0.0 5.5e-09 35.6 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20091786|ref|NP_617861.1| - 4.6e-08 31.9 0.2 3.5e-07 29.0 0.1 2.2 2 1 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|20091786|ref|NP_617861.1| - 3e-07 29.8 0.1 6.3e-07 28.7 0.1 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|20091786|ref|NP_617861.1| - 1.1e-06 28.0 0.2 1.7e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GDI PF00996.13 gi|20091786|ref|NP_617861.1| - 6.6e-06 24.7 0.5 1.5e-05 23.4 0.2 1.7 2 0 0 2 2 2 1 GDP dissociation inhibitor Pyr_redox PF00070.22 gi|20091786|ref|NP_617861.1| - 5.8e-05 23.4 0.9 0.00012 22.3 0.1 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|20091786|ref|NP_617861.1| - 8.3e-05 21.6 0.9 0.00056 18.8 0.2 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|20091786|ref|NP_617861.1| - 0.00011 22.1 0.0 0.00021 21.2 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|20091786|ref|NP_617861.1| - 0.00099 19.2 0.1 0.0018 18.3 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|20091786|ref|NP_617861.1| - 0.004 16.1 0.1 0.0058 15.5 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|20091786|ref|NP_617861.1| - 0.068 12.7 0.0 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|20091786|ref|NP_617861.1| - 0.069 11.7 0.1 0.13 10.8 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|20091786|ref|NP_617861.1| - 0.14 11.9 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|20091786|ref|NP_617861.1| - 0.2 11.0 0.3 0.43 10.0 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rieske PF00355.21 gi|20091787|ref|NP_617862.1| - 8e-19 67.0 0.1 9.7e-19 66.7 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|20091787|ref|NP_617862.1| - 3e-10 39.7 0.0 3.6e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain B12-binding_2 PF02607.12 gi|20091789|ref|NP_617864.1| - 8.9e-21 73.7 0.0 2e-20 72.6 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|20091789|ref|NP_617864.1| - 6.7e-18 64.7 0.2 1.1e-17 64.0 0.1 1.3 1 0 0 1 1 1 1 B12 binding domain Rep_fac_C PF08542.6 gi|20091789|ref|NP_617864.1| - 0.018 15.0 0.1 0.043 13.7 0.0 1.8 1 0 0 1 1 1 0 Replication factor C C-terminal domain MtmB PF05369.7 gi|20091790|ref|NP_617865.1| - 0 1081.0 4.1 0 1080.9 2.8 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB DUF2769 PF10967.3 gi|20091791|ref|NP_617866.1| - 1.6e-19 69.8 15.2 1.9e-19 69.7 10.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) TerY-C PF15616.1 gi|20091791|ref|NP_617866.1| - 1.7 8.5 13.8 2 8.3 9.6 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain DUF3317 PF11779.3 gi|20091794|ref|NP_617869.1| - 0.038 13.4 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) NosD PF05048.8 gi|20091797|ref|NP_617872.1| - 2e-37 128.5 75.8 2.1e-20 72.8 22.6 2.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091797|ref|NP_617872.1| - 2.7e-31 108.4 87.4 3.7e-20 72.2 21.4 3.3 1 1 2 3 3 3 3 Right handed beta helix region Acyl_transf_3 PF01757.17 gi|20091797|ref|NP_617872.1| - 0.034 12.9 0.1 0.059 12.1 0.1 1.3 1 0 0 1 1 1 0 Acyltransferase family OppC_N PF12911.2 gi|20091797|ref|NP_617872.1| - 0.13 11.6 0.1 0.13 11.6 0.1 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Pectate_lyase_3 PF12708.2 gi|20091797|ref|NP_617872.1| - 6.8 6.7 43.2 1.7 8.7 10.4 3.1 2 1 2 4 4 4 0 Pectate lyase superfamily protein Peptidase_C39_2 PF13529.1 gi|20091798|ref|NP_617873.1| - 2.3e-10 40.9 0.2 1.2e-09 38.6 0.1 2.3 1 1 0 1 1 1 1 Peptidase_C39 like family rve PF00665.21 gi|20091801|ref|NP_617876.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091801|ref|NP_617876.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20091801|ref|NP_617876.1| - 6.8e-05 22.9 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20091801|ref|NP_617876.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091801|ref|NP_617876.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20091801|ref|NP_617876.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Vps5 PF09325.5 gi|20091803|ref|NP_617878.1| - 0.0089 15.3 1.0 0.023 13.9 0.5 1.7 1 1 0 1 1 1 1 Vps5 C terminal like GATase PF00117.23 gi|20091804|ref|NP_617879.1| - 4.5e-49 166.5 0.0 5.6e-49 166.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|20091804|ref|NP_617879.1| - 3.1e-18 66.0 0.1 7.2e-18 64.8 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|20091805|ref|NP_617880.1| - 1.1e-92 310.0 0.0 2.8e-90 302.1 0.0 2.2 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|20091805|ref|NP_617880.1| - 1.1e-31 109.7 0.1 1.3e-30 106.2 0.0 2.4 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|20091806|ref|NP_617881.1| - 2.8e-35 121.6 0.0 4e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|20091806|ref|NP_617881.1| - 0.0042 16.2 0.0 0.0091 15.1 0.0 1.5 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|20091806|ref|NP_617881.1| - 0.007 15.6 0.0 0.11 11.7 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|20091806|ref|NP_617881.1| - 0.062 12.1 0.0 1.9 7.2 0.0 2.1 2 1 0 2 2 2 0 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|20091806|ref|NP_617881.1| - 0.1 11.4 0.0 0.64 8.8 0.0 2.0 2 0 0 2 2 2 0 Conserved region in glutamate synthase NMO PF03060.10 gi|20091806|ref|NP_617881.1| - 0.12 11.4 0.1 0.45 9.6 0.1 1.8 1 1 0 1 1 1 0 Nitronate monooxygenase Glycos_transf_3 PF00591.16 gi|20091807|ref|NP_617882.1| - 2.6e-101 338.2 0.9 3.4e-101 337.8 0.6 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|20091807|ref|NP_617882.1| - 3.7e-20 71.2 0.3 8.7e-20 70.0 0.2 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Trp_syntA PF00290.15 gi|20091808|ref|NP_617883.1| - 3.3e-93 310.9 0.1 4e-93 310.6 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|20091808|ref|NP_617883.1| - 6.5e-06 25.5 0.6 3e-05 23.3 0.3 2.0 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|20091808|ref|NP_617883.1| - 0.00037 19.8 0.2 0.00083 18.6 0.2 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein PA PF02225.17 gi|20091808|ref|NP_617883.1| - 0.0018 17.9 0.1 0.81 9.4 0.1 2.3 2 0 0 2 2 2 2 PA domain DHO_dh PF01180.16 gi|20091808|ref|NP_617883.1| - 0.014 14.4 0.1 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase NanE PF04131.9 gi|20091808|ref|NP_617883.1| - 0.021 13.7 0.1 0.43 9.5 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|20091808|ref|NP_617883.1| - 0.021 13.8 0.0 0.037 13.0 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|20091808|ref|NP_617883.1| - 0.047 12.8 0.0 0.33 10.0 0.0 2.2 3 0 0 3 3 3 0 Thiamine monophosphate synthase/TENI PucR PF07905.6 gi|20091808|ref|NP_617883.1| - 0.062 12.8 0.1 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family FMN_dh PF01070.13 gi|20091808|ref|NP_617883.1| - 0.063 12.1 0.5 0.25 10.1 0.6 1.7 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PALP PF00291.20 gi|20091809|ref|NP_617884.1| - 1.1e-38 133.2 1.1 1.6e-38 132.7 0.7 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|20091810|ref|NP_617885.1| - 1.5e-66 224.0 0.0 1.8e-66 223.8 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|20091810|ref|NP_617885.1| - 2.9e-06 26.4 0.1 0.00035 19.5 0.0 2.9 3 1 1 4 4 4 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|20091810|ref|NP_617885.1| - 0.00096 18.4 0.0 0.0017 17.6 0.0 1.4 1 0 0 1 1 1 1 PcrB family ThiG PF05690.9 gi|20091810|ref|NP_617885.1| - 0.0017 17.4 0.0 0.0091 15.0 0.0 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|20091810|ref|NP_617885.1| - 0.0019 17.5 0.0 0.004 16.4 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|20091810|ref|NP_617885.1| - 0.0078 15.2 0.0 0.099 11.5 0.0 2.3 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|20091810|ref|NP_617885.1| - 0.013 14.3 0.0 0.021 13.7 0.0 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain QRPTase_C PF01729.14 gi|20091810|ref|NP_617885.1| - 0.019 14.4 0.1 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|20091810|ref|NP_617885.1| - 0.045 12.5 0.0 0.076 11.8 0.0 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|20091810|ref|NP_617885.1| - 0.12 10.8 0.0 0.23 9.9 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain DUF45 PF01863.12 gi|20091811|ref|NP_617886.1| - 9.5e-38 130.0 2.1 1.1e-37 129.8 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|20091811|ref|NP_617886.1| - 9.5e-07 28.8 0.3 1.6e-06 28.1 0.1 1.4 2 0 0 2 2 2 1 WLM domain SprT-like PF10263.4 gi|20091811|ref|NP_617886.1| - 0.021 14.5 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF1016 PF06250.6 gi|20091812|ref|NP_617887.1| - 2e-143 477.2 9.7 2.2e-143 477.0 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) Surf_Ag_VNR PF07244.10 gi|20091812|ref|NP_617887.1| - 0.0034 17.7 0.3 0.0034 17.7 0.2 2.1 2 0 0 2 2 2 1 Surface antigen variable number repeat CAS_CSE1 PF03378.10 gi|20091812|ref|NP_617887.1| - 0.015 13.6 0.0 0.025 12.8 0.0 1.3 1 0 0 1 1 1 0 CAS/CSE protein, C-terminus DUF3837 PF12939.2 gi|20091814|ref|NP_617889.1| - 0.11 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) DUF1724 PF08350.5 gi|20091818|ref|NP_617893.1| - 2e-22 78.4 0.2 6.2e-22 76.9 0.0 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20091818|ref|NP_617893.1| - 0.01 15.4 0.1 0.018 14.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PKD PF00801.15 gi|20091819|ref|NP_617894.1| - 1e-13 50.8 4.2 1.8e-13 50.0 2.9 1.4 1 0 0 1 1 1 1 PKD domain DUF1182 PF06681.8 gi|20091819|ref|NP_617894.1| - 0.082 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1182) DUF1727 PF08353.5 gi|20091819|ref|NP_617894.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1727) DDE_Tnp_IS1 PF03400.8 gi|20091822|ref|NP_617897.1| - 1.5e-08 34.7 0.1 1.7e-08 34.6 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20091823|ref|NP_617898.1| - 1.6e-06 27.5 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20091823|ref|NP_617898.1| - 7.8e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20091823|ref|NP_617898.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20091823|ref|NP_617898.1| - 0.00068 19.7 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20091823|ref|NP_617898.1| - 0.0057 16.1 0.1 0.022 14.3 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20091823|ref|NP_617898.1| - 0.0063 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20091823|ref|NP_617898.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_Tnp_1 PF01527.15 gi|20091823|ref|NP_617898.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Transposase Zn_Tnp_IS1 PF03811.8 gi|20091823|ref|NP_617898.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain DUF2387 PF09526.5 gi|20091823|ref|NP_617898.1| - 0.053 13.4 0.7 0.095 12.6 0.5 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20091823|ref|NP_617898.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20091823|ref|NP_617898.1| - 0.081 12.8 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20091823|ref|NP_617898.1| - 0.13 12.1 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20091823|ref|NP_617898.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20091823|ref|NP_617898.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|20091823|ref|NP_617898.1| - 9.6 5.9 7.2 6.9 6.4 3.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Fae PF08714.6 gi|20091824|ref|NP_617899.1| - 8.1e-71 236.8 0.8 9.1e-71 236.7 0.5 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) Cro PF09048.5 gi|20091824|ref|NP_617899.1| - 0.13 11.9 0.4 0.29 10.8 0.2 1.6 2 0 0 2 2 2 0 Cro His_Phos_1 PF00300.17 gi|20091826|ref|NP_617901.1| - 1.6e-29 103.0 0.2 1.9e-29 102.7 0.1 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.17 gi|20091826|ref|NP_617901.1| - 0.0022 17.3 0.2 0.0044 16.4 0.1 1.4 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) RecO_C PF02565.10 gi|20091826|ref|NP_617901.1| - 0.054 13.3 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 Recombination protein O C terminal CN_hydrolase PF00795.17 gi|20091827|ref|NP_617902.1| - 6.5e-21 74.5 0.0 1.6e-10 40.6 0.0 2.2 2 0 0 2 2 2 2 Carbon-nitrogen hydrolase PvlArgDC PF01862.11 gi|20091830|ref|NP_617905.1| - 3e-62 209.0 0.0 3.3e-62 208.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DS PF01916.12 gi|20091831|ref|NP_617906.1| - 2e-75 253.7 0.1 2.5e-75 253.3 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF970 PF06153.6 gi|20091831|ref|NP_617906.1| - 0.0079 16.1 0.0 0.022 14.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF970) ArsR PF09824.4 gi|20091832|ref|NP_617907.1| - 1.5e-77 258.4 0.0 1.7e-77 258.2 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator DUF387 PF04079.11 gi|20091832|ref|NP_617907.1| - 0.0049 16.2 0.0 0.13 11.6 0.0 2.1 2 0 0 2 2 2 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|20091832|ref|NP_617907.1| - 0.01 15.6 0.0 0.4 10.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3418 PF11898.3 gi|20091832|ref|NP_617907.1| - 0.11 10.8 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) Retrotrans_gag PF03732.12 gi|20091832|ref|NP_617907.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein MarR_2 PF12802.2 gi|20091833|ref|NP_617908.1| - 1.1e-10 41.0 0.0 2.8e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20091833|ref|NP_617908.1| - 3.8e-10 38.9 0.1 2.9e-09 36.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|20091833|ref|NP_617908.1| - 5.4e-08 33.0 0.0 1.4e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|20091833|ref|NP_617908.1| - 3.5e-07 29.8 0.7 2.3e-05 24.0 0.0 3.1 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|20091833|ref|NP_617908.1| - 7.5e-07 28.7 0.2 2.8e-06 26.9 0.0 2.0 3 0 0 3 3 2 1 MarR family HTH_45 PF14947.1 gi|20091833|ref|NP_617908.1| - 1.7e-05 24.5 0.0 3.7e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_3 PF01381.17 gi|20091833|ref|NP_617908.1| - 4.3e-05 23.2 0.0 0.003 17.3 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.7 gi|20091833|ref|NP_617908.1| - 0.00013 21.5 0.1 0.00032 20.2 0.1 1.7 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|20091833|ref|NP_617908.1| - 0.0002 21.4 0.0 0.0005 20.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|20091833|ref|NP_617908.1| - 0.001 18.9 0.0 0.0036 17.2 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Mnd1 PF03962.10 gi|20091833|ref|NP_617908.1| - 0.0026 17.4 0.2 0.0088 15.7 0.0 1.8 1 1 0 2 2 2 1 Mnd1 family HTH_36 PF13730.1 gi|20091833|ref|NP_617908.1| - 0.0053 16.8 0.0 0.017 15.2 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|20091833|ref|NP_617908.1| - 0.0064 16.0 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|20091833|ref|NP_617908.1| - 0.0066 15.9 0.1 0.012 15.2 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HxlR PF01638.12 gi|20091833|ref|NP_617908.1| - 0.0096 15.5 0.1 0.027 14.0 0.1 1.9 1 1 0 1 1 1 1 HxlR-like helix-turn-helix EAP30 PF04157.11 gi|20091833|ref|NP_617908.1| - 0.013 14.6 0.2 0.089 11.9 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family GntR PF00392.16 gi|20091833|ref|NP_617908.1| - 0.02 14.3 0.0 0.07 12.5 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|20091833|ref|NP_617908.1| - 0.022 14.7 0.0 0.083 12.9 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|20091833|ref|NP_617908.1| - 0.028 14.0 0.0 0.076 12.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|20091833|ref|NP_617908.1| - 0.033 13.7 0.0 0.096 12.2 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Lant_dehyd_C PF04738.8 gi|20091833|ref|NP_617908.1| - 0.039 12.2 0.0 0.054 11.7 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, C terminus HTH_5 PF01022.15 gi|20091833|ref|NP_617908.1| - 0.039 13.6 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20091833|ref|NP_617908.1| - 0.042 13.6 0.0 0.093 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.3 gi|20091833|ref|NP_617908.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain CcdA PF07362.7 gi|20091833|ref|NP_617908.1| - 0.057 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA TrmB PF01978.14 gi|20091833|ref|NP_617908.1| - 0.06 13.0 0.1 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|20091833|ref|NP_617908.1| - 0.065 13.3 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix KorB PF08535.5 gi|20091833|ref|NP_617908.1| - 0.098 12.8 0.0 0.29 11.3 0.0 1.8 1 0 0 1 1 1 0 KorB domain Metallophos_2 PF12850.2 gi|20091834|ref|NP_617909.1| - 1.8e-25 89.5 0.0 2.3e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20091834|ref|NP_617909.1| - 7.7e-07 28.7 0.2 0.00091 18.6 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|20091837|ref|NP_617912.1| - 6.6e-08 32.3 0.1 0.0035 17.1 0.0 2.6 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain Na_H_Exchanger PF00999.16 gi|20091838|ref|NP_617913.1| - 3.4e-43 147.6 48.4 4.5e-43 147.2 33.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|20091838|ref|NP_617913.1| - 1.4e-26 92.7 0.1 2.7e-26 91.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|20091838|ref|NP_617913.1| - 3.8e-11 42.4 0.4 1.1e-10 40.9 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|20091838|ref|NP_617913.1| - 1.3e-07 31.7 1.0 2.6e-07 30.8 0.2 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|20091838|ref|NP_617913.1| - 4.6e-05 22.8 0.3 9.5e-05 21.8 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|20091838|ref|NP_617913.1| - 0.00029 20.9 0.1 0.00056 19.9 0.1 1.5 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|20091838|ref|NP_617913.1| - 0.00088 18.7 0.1 0.0016 17.8 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|20091838|ref|NP_617913.1| - 0.0019 18.0 0.1 0.004 17.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|20091838|ref|NP_617913.1| - 0.0024 16.9 0.4 0.0038 16.2 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|20091838|ref|NP_617913.1| - 0.0033 17.8 0.1 0.01 16.2 0.1 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|20091838|ref|NP_617913.1| - 0.0038 16.8 0.2 0.0078 15.8 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|20091838|ref|NP_617913.1| - 0.0063 15.6 0.1 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|20091838|ref|NP_617913.1| - 0.012 14.6 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain NmrA PF05368.8 gi|20091838|ref|NP_617913.1| - 0.013 14.7 0.2 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|20091838|ref|NP_617913.1| - 0.033 13.9 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|20091838|ref|NP_617913.1| - 0.038 14.4 0.8 0.15 12.4 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Na_Ca_ex PF01699.19 gi|20091839|ref|NP_617914.1| - 3.8e-51 172.3 21.4 1.9e-26 92.3 3.6 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein NTP_transferase PF00483.18 gi|20091840|ref|NP_617915.1| - 1.7e-40 138.8 0.0 2.2e-40 138.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|20091840|ref|NP_617915.1| - 6.5e-19 66.5 24.8 2.5e-09 36.1 2.7 5.2 3 1 4 7 7 7 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|20091840|ref|NP_617915.1| - 2.3e-13 50.5 0.0 3.2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|20091840|ref|NP_617915.1| - 9.8e-09 34.6 19.4 1.4e-07 30.9 1.7 4.8 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|20091840|ref|NP_617915.1| - 1.2e-05 25.0 0.0 2.8e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AroM PF07302.6 gi|20091840|ref|NP_617915.1| - 0.098 11.9 0.1 2.3 7.4 0.0 2.1 1 1 1 2 2 2 0 AroM protein SIS PF01380.17 gi|20091841|ref|NP_617916.1| - 4.4e-59 197.7 0.3 1.4e-30 105.5 0.1 2.5 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|20091841|ref|NP_617916.1| - 6.2e-24 84.4 0.0 1.8e-23 82.9 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|20091841|ref|NP_617916.1| - 1.4e-18 66.8 0.0 5.2e-14 51.7 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|20091841|ref|NP_617916.1| - 2e-18 66.3 0.0 9.7e-18 64.0 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|20091841|ref|NP_617916.1| - 2.1e-05 23.3 0.0 3.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF2795 PF11387.3 gi|20091841|ref|NP_617916.1| - 0.075 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) AflR PF08493.5 gi|20091841|ref|NP_617916.1| - 0.19 10.7 0.2 0.32 10.0 0.1 1.2 1 0 0 1 1 1 0 Aflatoxin regulatory protein PGM_PMM_I PF02878.11 gi|20091842|ref|NP_617917.1| - 7.8e-38 129.0 0.0 1.6e-37 128.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|20091842|ref|NP_617917.1| - 2.7e-27 95.1 0.1 9.4e-27 93.3 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|20091842|ref|NP_617917.1| - 1.8e-19 69.8 0.0 3.5e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|20091842|ref|NP_617917.1| - 2.5e-11 43.4 0.3 6.4e-11 42.1 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|20091842|ref|NP_617917.1| - 0.018 15.6 0.0 0.05 14.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091842|ref|NP_617917.1| - 0.06 13.0 0.1 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain PG_binding_1 PF01471.13 gi|20091842|ref|NP_617917.1| - 0.15 12.0 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Putative peptidoglycan binding domain NTP_transferase PF00483.18 gi|20091843|ref|NP_617918.1| - 1.9e-46 158.3 0.0 7e-46 156.5 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.19 gi|20091843|ref|NP_617918.1| - 6.1e-17 60.2 22.0 2.7e-09 36.0 0.6 4.6 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|20091843|ref|NP_617918.1| - 7.9e-13 48.7 0.0 1.1e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|20091843|ref|NP_617918.1| - 1.1e-06 28.0 2.8 1.1e-06 28.0 2.0 3.8 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|20091843|ref|NP_617918.1| - 0.00015 21.3 0.0 0.001 18.6 0.0 2.2 3 0 0 3 3 3 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAA PF00004.24 gi|20091847|ref|NP_617922.1| - 1.2e-36 125.7 0.0 2.3e-36 124.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|20091847|ref|NP_617922.1| - 1.6e-09 37.9 0.0 4.2e-09 36.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|20091847|ref|NP_617922.1| - 5e-07 29.0 0.0 7.4e-06 25.1 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|20091847|ref|NP_617922.1| - 6.7e-07 30.1 0.4 3.1e-06 27.9 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20091847|ref|NP_617922.1| - 3.4e-06 27.2 0.7 0.00022 21.3 0.2 2.7 2 1 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|20091847|ref|NP_617922.1| - 1.2e-05 24.1 0.0 2.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_5 PF07728.9 gi|20091847|ref|NP_617922.1| - 3.6e-05 23.5 0.0 0.00014 21.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|20091847|ref|NP_617922.1| - 7.9e-05 22.6 0.0 0.00018 21.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|20091847|ref|NP_617922.1| - 9.1e-05 21.9 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|20091847|ref|NP_617922.1| - 0.00024 21.1 0.2 0.0096 15.9 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|20091847|ref|NP_617922.1| - 0.00041 20.6 0.0 0.0014 18.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|20091847|ref|NP_617922.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|20091847|ref|NP_617922.1| - 0.0012 17.8 0.0 0.0049 15.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|20091847|ref|NP_617922.1| - 0.0014 17.8 0.0 0.0027 16.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|20091847|ref|NP_617922.1| - 0.0036 16.7 1.6 0.13 11.6 0.1 2.2 1 1 1 2 2 2 1 AAA domain IPT PF01745.11 gi|20091847|ref|NP_617922.1| - 0.011 14.9 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_10 PF12846.2 gi|20091847|ref|NP_617922.1| - 0.017 14.5 0.4 0.1 11.9 0.0 2.3 3 0 0 3 3 3 0 AAA-like domain RNA_helicase PF00910.17 gi|20091847|ref|NP_617922.1| - 0.022 14.9 0.0 0.056 13.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|20091847|ref|NP_617922.1| - 0.025 14.2 0.0 0.049 13.2 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein Sigma54_activat PF00158.21 gi|20091847|ref|NP_617922.1| - 0.025 14.0 0.0 0.068 12.6 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|20091847|ref|NP_617922.1| - 0.027 14.3 0.0 0.057 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|20091847|ref|NP_617922.1| - 0.028 13.2 0.0 0.05 12.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Torsin PF06309.6 gi|20091847|ref|NP_617922.1| - 0.04 13.8 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Torsin PduV-EutP PF10662.4 gi|20091847|ref|NP_617922.1| - 0.04 13.3 0.0 0.083 12.3 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|20091847|ref|NP_617922.1| - 0.041 13.4 0.0 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|20091847|ref|NP_617922.1| - 0.042 13.4 0.1 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.11 gi|20091847|ref|NP_617922.1| - 0.049 12.8 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|20091847|ref|NP_617922.1| - 0.055 13.7 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 1 0 ABC transporter T2SE PF00437.15 gi|20091847|ref|NP_617922.1| - 0.075 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|20091847|ref|NP_617922.1| - 0.083 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PEPCK_ATP PF01293.15 gi|20091847|ref|NP_617922.1| - 0.09 11.2 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Sigma54_activ_2 PF14532.1 gi|20091847|ref|NP_617922.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Lactamase_B_2 PF12706.2 gi|20091849|ref|NP_617924.1| - 1.9e-33 115.6 0.0 2.5e-33 115.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20091849|ref|NP_617924.1| - 6.5e-13 48.7 0.0 2e-10 40.6 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|20091849|ref|NP_617924.1| - 0.0026 17.2 0.0 0.0047 16.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease EFP_N PF08207.7 gi|20091849|ref|NP_617924.1| - 0.11 12.3 0.0 1.6 8.6 0.0 2.4 3 0 0 3 3 3 0 Elongation factor P (EF-P) KOW-like domain Alpha-amylase PF00128.19 gi|20091850|ref|NP_617925.1| - 2.6e-28 99.3 0.0 3.7e-26 92.2 0.0 2.3 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|20091850|ref|NP_617925.1| - 0.00026 21.0 0.0 0.00058 19.9 0.0 1.5 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain DUF3459 PF11941.3 gi|20091850|ref|NP_617925.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) TP_methylase PF00590.15 gi|20091851|ref|NP_617926.1| - 2.3e-52 177.7 0.0 2.7e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|20091851|ref|NP_617926.1| - 0.078 13.1 0.2 0.72 9.9 0.1 2.3 1 1 1 2 2 2 0 Radical SAM superfamily HEM4 PF02602.10 gi|20091852|ref|NP_617927.1| - 5.4e-48 163.2 0.1 6.6e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Radical_SAM PF04055.16 gi|20091853|ref|NP_617928.1| - 1.7e-23 83.6 0.0 1.4e-22 80.6 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20091853|ref|NP_617928.1| - 6e-11 42.6 0.0 1.1e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20091853|ref|NP_617928.1| - 7.1e-10 38.9 0.0 1.3e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyco_hydro_97 PF10566.4 gi|20091853|ref|NP_617928.1| - 0.034 13.2 0.0 0.05 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase 97 AP_endonuc_2 PF01261.19 gi|20091853|ref|NP_617928.1| - 0.034 13.4 0.0 0.17 11.1 0.0 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Pterin_bind PF00809.17 gi|20091853|ref|NP_617928.1| - 0.061 12.6 0.0 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Pterin binding enzyme HAD_2 PF13419.1 gi|20091853|ref|NP_617928.1| - 0.099 12.8 0.0 2.4 8.3 0.0 2.7 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase DUF3334 PF11813.3 gi|20091855|ref|NP_617930.1| - 0.82 9.1 6.1 4.7 6.6 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3334) Trypsin_2 PF13365.1 gi|20091856|ref|NP_617931.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Trypsin-like peptidase domain Oxidored_molyb PF00174.14 gi|20091857|ref|NP_617932.1| - 2.2e-45 154.0 0.0 3.4e-45 153.4 0.0 1.3 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain APH PF01636.18 gi|20091858|ref|NP_617933.1| - 5.9e-30 104.7 0.0 7.6e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|20091858|ref|NP_617933.1| - 0.0037 16.2 0.0 0.012 14.5 0.0 1.7 1 1 0 1 1 1 1 Fructosamine kinase Choline_kinase PF01633.15 gi|20091858|ref|NP_617933.1| - 0.007 15.9 0.1 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Choline/ethanolamine kinase Kdo PF06293.9 gi|20091858|ref|NP_617933.1| - 0.046 12.7 0.0 9.1 5.2 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family V_ATPase_I PF01496.14 gi|20091858|ref|NP_617933.1| - 0.095 10.5 0.1 0.27 9.0 0.0 1.6 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family APH PF01636.18 gi|20091860|ref|NP_617935.1| - 8.6e-07 28.9 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|20091860|ref|NP_617935.1| - 0.023 13.7 0.1 0.05 12.6 0.1 1.5 2 0 0 2 2 2 0 Protein tyrosine kinase HAD_2 PF13419.1 gi|20091861|ref|NP_617936.1| - 1.3e-23 84.1 0.0 1.6e-23 83.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20091861|ref|NP_617936.1| - 0.0021 17.7 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|20091861|ref|NP_617936.1| - 0.015 15.6 0.0 0.041 14.2 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|20091861|ref|NP_617936.1| - 0.023 13.8 0.6 2.3 7.3 0.0 2.2 1 1 0 2 2 2 0 Putative Phosphatase Methyltransf_18 PF12847.2 gi|20091862|ref|NP_617937.1| - 2.7e-09 37.5 0.0 4.5e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091862|ref|NP_617937.1| - 1.5e-07 31.0 0.0 2.2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091862|ref|NP_617937.1| - 1.4e-06 28.6 0.0 2.7e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091862|ref|NP_617937.1| - 3.2e-05 23.7 0.0 4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20091862|ref|NP_617937.1| - 0.0001 22.3 0.0 0.00024 21.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20091862|ref|NP_617937.1| - 0.0001 21.7 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20091862|ref|NP_617937.1| - 0.00018 20.7 0.0 0.00026 20.2 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|20091862|ref|NP_617937.1| - 0.00026 20.0 0.0 0.00039 19.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|20091862|ref|NP_617937.1| - 0.00038 19.8 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|20091862|ref|NP_617937.1| - 0.0031 17.9 0.0 0.0056 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091862|ref|NP_617937.1| - 0.0039 17.5 0.0 0.0082 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|20091862|ref|NP_617937.1| - 0.0056 16.1 0.0 0.009 15.4 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|20091862|ref|NP_617937.1| - 0.025 13.2 0.0 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.7 gi|20091862|ref|NP_617937.1| - 0.026 14.0 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.14 gi|20091862|ref|NP_617937.1| - 0.032 13.7 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Sp100 PF03172.8 gi|20091862|ref|NP_617937.1| - 0.05 13.5 0.0 7.2 6.6 0.0 2.6 2 1 1 3 3 3 0 Sp100 domain Methyltransf_15 PF09445.5 gi|20091862|ref|NP_617937.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|20091862|ref|NP_617937.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_18 PF12847.2 gi|20091863|ref|NP_617938.1| - 4.4e-10 40.1 0.0 8.8e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091863|ref|NP_617938.1| - 7.8e-08 32.0 0.0 2.5e-07 30.3 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091863|ref|NP_617938.1| - 2e-06 28.2 0.0 3.9e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091863|ref|NP_617938.1| - 3.4e-06 27.3 0.0 6.4e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091863|ref|NP_617938.1| - 5.3e-06 26.2 0.0 6.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20091863|ref|NP_617938.1| - 1.1e-05 24.6 0.0 1.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|20091863|ref|NP_617938.1| - 2.9e-05 24.0 0.0 5.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20091863|ref|NP_617938.1| - 4.7e-05 22.8 0.0 8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|20091863|ref|NP_617938.1| - 0.00039 20.8 0.0 0.0019 18.6 0.0 2.1 3 0 0 3 3 2 1 Methyltransferase domain GidB PF02527.10 gi|20091863|ref|NP_617938.1| - 0.002 17.2 0.0 0.0055 15.8 0.0 1.7 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G DREV PF05219.7 gi|20091863|ref|NP_617938.1| - 0.006 15.5 0.0 0.011 14.6 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Ubie_methyltran PF01209.13 gi|20091863|ref|NP_617938.1| - 0.0078 15.3 0.0 0.015 14.4 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF938 PF06080.7 gi|20091863|ref|NP_617938.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|20091863|ref|NP_617938.1| - 0.048 12.6 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|20091863|ref|NP_617938.1| - 0.096 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase ABC_tran PF00005.22 gi|20091864|ref|NP_617939.1| - 2.2e-19 70.1 0.0 2.9e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20091864|ref|NP_617939.1| - 2.2e-12 47.1 0.2 3.7e-12 46.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20091864|ref|NP_617939.1| - 6.1e-06 26.4 3.5 0.01 15.8 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|20091864|ref|NP_617939.1| - 0.0017 17.8 0.1 0.0031 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20091864|ref|NP_617939.1| - 0.0019 17.4 0.0 0.0043 16.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|20091864|ref|NP_617939.1| - 0.0028 17.1 0.4 0.38 10.1 0.1 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|20091864|ref|NP_617939.1| - 0.0054 16.8 0.1 0.33 11.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20091864|ref|NP_617939.1| - 0.016 14.5 0.2 0.74 9.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|20091864|ref|NP_617939.1| - 0.024 14.1 0.2 0.23 10.9 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|20091864|ref|NP_617939.1| - 0.043 13.2 0.1 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|20091864|ref|NP_617939.1| - 0.048 13.6 0.2 0.1 12.5 0.1 1.5 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|20091864|ref|NP_617939.1| - 0.051 12.7 0.3 0.11 11.6 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|20091864|ref|NP_617939.1| - 0.11 11.6 0.4 0.46 9.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 KaiC PF06745.8 gi|20091864|ref|NP_617939.1| - 0.45 9.5 3.3 1.9 7.5 0.1 2.4 3 0 0 3 3 3 0 KaiC ABC_tran PF00005.22 gi|20091865|ref|NP_617940.1| - 1.8e-29 102.7 0.0 3.9e-29 101.6 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|20091865|ref|NP_617940.1| - 2.7e-08 33.9 0.3 4.4e-08 33.3 0.2 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|20091865|ref|NP_617940.1| - 5.1e-07 29.9 0.1 0.0013 18.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|20091865|ref|NP_617940.1| - 5.6e-05 23.4 2.1 0.00024 21.3 1.5 2.1 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.1 gi|20091865|ref|NP_617940.1| - 0.00024 20.5 0.0 0.00046 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20091865|ref|NP_617940.1| - 0.00034 20.7 0.3 0.0064 16.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20091865|ref|NP_617940.1| - 0.0021 17.3 0.0 0.083 12.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|20091865|ref|NP_617940.1| - 0.0022 17.1 0.0 0.0054 15.9 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|20091865|ref|NP_617940.1| - 0.0056 16.1 0.1 0.5 9.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|20091865|ref|NP_617940.1| - 0.0067 15.9 0.4 0.81 9.0 0.0 2.5 3 0 0 3 3 3 1 AAA-like domain DUF258 PF03193.11 gi|20091865|ref|NP_617940.1| - 0.0085 15.2 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|20091865|ref|NP_617940.1| - 0.013 15.2 0.1 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|20091865|ref|NP_617940.1| - 0.099 12.5 0.0 0.94 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|20091865|ref|NP_617940.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|20091865|ref|NP_617940.1| - 0.12 11.9 0.0 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 NACHT domain SBP_bac_5 PF00496.17 gi|20091866|ref|NP_617941.1| - 5.2e-100 334.8 0.4 6.7e-100 334.5 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|20091867|ref|NP_617942.1| - 3.4e-37 127.7 12.0 3.4e-37 127.7 8.3 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2484 PF10658.4 gi|20091867|ref|NP_617942.1| - 2.7 8.1 8.0 0.29 11.2 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) BPD_transp_1 PF00528.17 gi|20091868|ref|NP_617943.1| - 6.6e-23 81.1 11.3 6.6e-23 81.1 7.8 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20091868|ref|NP_617943.1| - 1.4 8.3 0.0 1.4 8.3 0.0 3.0 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C HAD_2 PF13419.1 gi|20091869|ref|NP_617944.1| - 1e-23 84.4 0.0 1.2e-23 84.2 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20091869|ref|NP_617944.1| - 4.6e-05 23.0 0.0 7.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|20091869|ref|NP_617944.1| - 0.00046 20.6 0.0 0.0008 19.8 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3206 PF11472.3 gi|20091869|ref|NP_617944.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) Put_Phosphatase PF06888.7 gi|20091869|ref|NP_617944.1| - 0.13 11.4 0.0 0.48 9.5 0.0 1.8 2 0 0 2 2 2 0 Putative Phosphatase tRNA-synt_1 PF00133.17 gi|20091870|ref|NP_617945.1| - 3e-134 448.2 2.3 2.9e-133 445.0 1.6 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|20091870|ref|NP_617945.1| - 1.9e-36 125.0 0.0 3.8e-36 124.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|20091870|ref|NP_617945.1| - 1.7e-23 82.9 0.3 2e-13 49.7 0.0 3.2 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|20091870|ref|NP_617945.1| - 1.7e-05 24.2 0.0 7.7e-05 22.0 0.0 1.9 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|20091870|ref|NP_617945.1| - 2.1e-05 23.8 0.0 0.038 13.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain ABC2_membrane_5 PF13346.1 gi|20091871|ref|NP_617946.1| - 0.033 13.4 1.6 0.043 13.0 1.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein UbiA PF01040.13 gi|20091871|ref|NP_617946.1| - 0.089 11.9 2.7 0.1 11.7 1.9 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF2721 PF11026.3 gi|20091871|ref|NP_617946.1| - 0.32 10.6 2.1 0.34 10.5 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) T2SF PF00482.18 gi|20091873|ref|NP_617948.1| - 1.6e-16 60.3 0.1 2.1e-09 37.3 0.0 3.4 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Peptidase_C97 PF05903.9 gi|20091873|ref|NP_617948.1| - 0.029 14.1 0.1 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 PPPDE putative peptidase domain T2SE PF00437.15 gi|20091874|ref|NP_617949.1| - 1.5e-44 151.9 0.0 2.2e-44 151.4 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|20091874|ref|NP_617949.1| - 0.019 15.2 0.1 0.067 13.4 0.1 1.8 2 0 0 2 2 2 0 ABC transporter AAA_29 PF13555.1 gi|20091874|ref|NP_617949.1| - 0.1 12.1 0.1 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|20091875|ref|NP_617950.1| - 4.8e-26 91.2 0.2 5.5e-26 91.0 0.1 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|20091875|ref|NP_617950.1| - 4.8e-10 38.8 0.6 3.3e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein AAA_25 PF13481.1 gi|20091875|ref|NP_617950.1| - 3e-07 30.0 0.0 5.6e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.7 gi|20091875|ref|NP_617950.1| - 2.9e-05 23.6 0.1 6.3e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rad51 PF08423.6 gi|20091875|ref|NP_617950.1| - 0.00021 20.2 0.2 0.00092 18.1 0.1 2.1 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.1 gi|20091875|ref|NP_617950.1| - 0.00039 20.5 0.1 0.00078 19.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|20091875|ref|NP_617950.1| - 0.0071 16.2 0.6 0.11 12.3 0.4 2.3 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|20091875|ref|NP_617950.1| - 0.017 14.1 0.3 0.027 13.5 0.0 1.4 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Rsd_AlgQ PF04353.8 gi|20091875|ref|NP_617950.1| - 0.05 13.3 0.1 0.08 12.6 0.1 1.3 1 0 0 1 1 1 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Elong_Iki1 PF10483.4 gi|20091875|ref|NP_617950.1| - 0.052 12.9 0.1 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 UPF0079 PF02367.12 gi|20091875|ref|NP_617950.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|20091875|ref|NP_617950.1| - 0.15 11.0 4.5 4 6.3 0.8 2.2 2 0 0 2 2 2 0 AAA ATPase domain DUF4097 PF13349.1 gi|20091876|ref|NP_617951.1| - 0.0045 16.5 0.4 0.0072 15.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) GDE_N PF12439.3 gi|20091876|ref|NP_617951.1| - 0.043 13.0 0.1 0.064 12.4 0.1 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme N terminal Olfactory_mark PF06554.7 gi|20091876|ref|NP_617951.1| - 0.057 12.9 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Olfactory marker protein Arch_flagellin PF01917.11 gi|20091876|ref|NP_617951.1| - 0.17 11.4 6.7 1 8.9 4.6 1.9 1 1 0 1 1 1 0 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|20091877|ref|NP_617952.1| - 1.7e-13 50.6 0.5 2.2e-12 47.0 0.3 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin Sugarporin_N PF11471.3 gi|20091878|ref|NP_617953.1| - 0.041 13.5 0.1 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Sec2p PF06428.6 gi|20091878|ref|NP_617953.1| - 0.1 12.4 0.6 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF948 PF06103.6 gi|20091878|ref|NP_617953.1| - 0.12 12.2 0.2 0.68 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Arch_flagellin PF01917.11 gi|20091879|ref|NP_617954.1| - 5.7e-30 104.3 4.7 3e-29 102.0 3.2 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin DUF945 PF06097.6 gi|20091879|ref|NP_617954.1| - 1.2 7.7 3.6 1.4 7.6 0.6 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF945) Arch_flagellin PF01917.11 gi|20091880|ref|NP_617955.1| - 1.3e-34 119.5 8.4 2e-34 118.8 5.9 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin DUF4244 PF14029.1 gi|20091880|ref|NP_617955.1| - 0.012 14.6 2.7 0.49 9.5 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) CheR PF01739.13 gi|20091881|ref|NP_617956.1| - 1.1e-58 197.7 0.0 1.4e-58 197.4 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|20091881|ref|NP_617956.1| - 4.5e-14 51.5 1.1 7.3e-14 50.8 0.7 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|20091881|ref|NP_617956.1| - 9.2e-06 26.0 0.0 3.4e-05 24.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091881|ref|NP_617956.1| - 0.00028 20.4 0.0 0.0018 17.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091881|ref|NP_617956.1| - 0.0012 18.6 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091881|ref|NP_617956.1| - 0.003 18.0 0.0 0.01 16.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091881|ref|NP_617956.1| - 0.019 15.5 0.0 0.036 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20091881|ref|NP_617956.1| - 0.028 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|20091881|ref|NP_617956.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase CheD PF03975.8 gi|20091882|ref|NP_617957.1| - 2.4e-30 104.5 0.1 3.8e-30 103.9 0.1 1.3 1 0 0 1 1 1 1 CheD chemotactic sensory transduction FeoC PF09012.5 gi|20091882|ref|NP_617957.1| - 0.35 10.6 2.0 2.1 8.1 0.0 2.3 2 0 0 2 2 2 0 FeoC like transcriptional regulator CheC PF04509.7 gi|20091883|ref|NP_617958.1| - 2.4e-25 87.9 0.4 2.4e-13 49.5 0.0 2.8 2 1 1 3 3 3 2 CheC-like family CheX PF13690.1 gi|20091883|ref|NP_617958.1| - 6.2e-12 45.2 0.3 2e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX PRC PF05239.11 gi|20091883|ref|NP_617958.1| - 0.11 12.4 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 PRC-barrel domain CheW PF01584.14 gi|20091884|ref|NP_617959.1| - 5.3e-27 93.9 1.9 4.6e-26 90.9 0.3 2.7 2 1 1 3 3 3 1 CheW-like domain HATPase_c PF02518.21 gi|20091884|ref|NP_617959.1| - 2.2e-21 75.6 0.2 6.1e-21 74.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.9 gi|20091884|ref|NP_617959.1| - 4.3e-17 62.2 1.5 1.4e-16 60.5 1.0 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain Hpt PF01627.18 gi|20091884|ref|NP_617959.1| - 1.1e-16 60.6 0.0 2.9e-16 59.2 0.0 1.8 1 0 0 1 1 1 1 Hpt domain P2 PF07194.6 gi|20091884|ref|NP_617959.1| - 4.5e-16 58.4 0.1 4.5e-16 58.4 0.1 2.8 3 0 0 3 3 3 1 P2 response regulator binding domain HATPase_c_3 PF13589.1 gi|20091884|ref|NP_617959.1| - 2.5e-06 27.1 1.5 3.2e-05 23.5 0.7 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|20091884|ref|NP_617959.1| - 0.00027 20.5 4.1 0.00059 19.4 0.6 2.8 2 1 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|20091884|ref|NP_617959.1| - 0.072 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CheB_methylest PF01339.12 gi|20091885|ref|NP_617960.1| - 9.5e-59 197.8 0.1 1.3e-58 197.4 0.1 1.2 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|20091885|ref|NP_617960.1| - 2.8e-24 85.2 0.7 1.5e-23 82.8 0.3 2.2 2 0 0 2 2 2 1 Response regulator receiver domain Response_reg PF00072.19 gi|20091886|ref|NP_617961.1| - 3e-30 104.4 0.6 3.4e-30 104.3 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.7 gi|20091887|ref|NP_617962.1| - 1.8e-53 181.0 0.6 2.4e-53 180.6 0.4 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Sigma70_r4_2 PF08281.7 gi|20091887|ref|NP_617962.1| - 0.094 12.1 0.0 7.3 6.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Rtt106 PF08512.7 gi|20091887|ref|NP_617962.1| - 0.098 12.6 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 Histone chaperone Rttp106-like CheW PF01584.14 gi|20091888|ref|NP_617963.1| - 6.6e-37 126.0 0.3 8e-37 125.7 0.2 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|20091889|ref|NP_617964.1| - 1e-44 152.6 48.9 4e-43 147.4 22.6 3.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|20091889|ref|NP_617964.1| - 7.3e-18 64.8 0.1 1.2e-07 32.0 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|20091889|ref|NP_617964.1| - 1.2e-14 54.1 0.0 6.8e-14 51.7 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|20091889|ref|NP_617964.1| - 4.7e-13 49.1 0.0 2.1e-06 27.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|20091889|ref|NP_617964.1| - 4e-09 36.2 0.0 0.00039 20.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold HAMP PF00672.20 gi|20091889|ref|NP_617964.1| - 0.00066 19.8 3.1 0.046 13.8 0.0 4.4 4 1 0 4 4 4 1 HAMP domain PAS_11 PF14598.1 gi|20091889|ref|NP_617964.1| - 0.001 18.9 0.0 0.18 11.7 0.0 2.7 2 0 0 2 2 2 1 PAS domain DUF3141 PF11339.3 gi|20091889|ref|NP_617964.1| - 0.069 11.4 3.6 0.51 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3141) DUF948 PF06103.6 gi|20091889|ref|NP_617964.1| - 0.45 10.4 29.5 1.5 8.7 2.6 6.0 4 2 2 7 7 7 0 Bacterial protein of unknown function (DUF948) DUF489 PF04356.7 gi|20091889|ref|NP_617964.1| - 0.83 9.2 13.7 0.48 9.9 5.2 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF489) Fib_alpha PF08702.5 gi|20091889|ref|NP_617964.1| - 9.2 6.3 23.8 0.2 11.7 4.1 4.1 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family DrsE PF02635.10 gi|20091890|ref|NP_617965.1| - 1.2e-10 41.5 0.0 1.4e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|20091890|ref|NP_617965.1| - 1.9e-09 37.4 0.1 2e-09 37.3 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family HMG-CoA_red PF00368.13 gi|20091891|ref|NP_617966.1| - 5e-147 489.4 2.2 5.7e-147 489.2 1.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase MerC PF03203.9 gi|20091892|ref|NP_617967.1| - 0.019 15.3 0.1 0.02 15.2 0.0 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein TrbL PF04610.9 gi|20091892|ref|NP_617967.1| - 0.037 13.7 2.1 0.043 13.5 1.4 1.0 1 0 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein Baculo_11_kDa PF06143.6 gi|20091892|ref|NP_617967.1| - 0.086 12.2 0.6 0.16 11.3 0.4 1.5 1 1 0 1 1 1 0 Baculovirus 11 kDa family DUF1145 PF06611.7 gi|20091892|ref|NP_617967.1| - 1.1 8.9 6.2 1.5 8.5 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1145) POR_N PF01855.14 gi|20091893|ref|NP_617968.1| - 7.2e-54 182.7 0.0 1.2e-53 182.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|20091893|ref|NP_617968.1| - 2e-43 148.2 0.1 3.5e-43 147.5 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|20091893|ref|NP_617968.1| - 2.9e-07 30.1 0.0 6e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|20091894|ref|NP_617969.1| - 3.1e-30 104.7 0.0 4.3e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|20091894|ref|NP_617969.1| - 3.8e-28 97.2 0.3 6.6e-28 96.4 0.2 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Latrotoxin_C PF15658.1 gi|20091894|ref|NP_617969.1| - 0.062 13.1 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 Latrotoxin C-terminal domain Arch_flagellin PF01917.11 gi|20091895|ref|NP_617970.1| - 4.8e-22 78.5 10.7 1.4e-21 76.9 7.4 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin A2M_N PF01835.14 gi|20091895|ref|NP_617970.1| - 0.0055 16.9 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 MG2 domain DUF1628 PF07790.6 gi|20091895|ref|NP_617970.1| - 0.017 15.8 1.6 0.017 15.8 1.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) Arch_fla_DE PF04659.8 gi|20091896|ref|NP_617971.1| - 0.0023 17.7 0.0 0.0038 17.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal flagella protein DUF4629 PF15442.1 gi|20091896|ref|NP_617971.1| - 0.11 12.6 2.0 0.18 11.9 1.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4629) Arch_flagellin PF01917.11 gi|20091897|ref|NP_617972.1| - 5.7e-05 22.8 0.2 0.00083 19.0 0.1 1.9 2 0 0 2 2 2 2 Archaebacterial flagellin KaiC PF06745.8 gi|20091899|ref|NP_617974.1| - 2.4e-21 75.9 0.0 2.8e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|20091899|ref|NP_617974.1| - 7.4e-09 35.2 0.0 1.1e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|20091899|ref|NP_617974.1| - 0.0021 17.8 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase PAXNEB PF05625.6 gi|20091899|ref|NP_617974.1| - 0.0061 15.4 0.8 0.011 14.5 0.1 1.6 1 1 1 2 2 2 1 PAXNEB protein AAA_22 PF13401.1 gi|20091899|ref|NP_617974.1| - 0.021 14.9 0.0 0.049 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|20091899|ref|NP_617974.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 NPP PF08384.5 gi|20091899|ref|NP_617974.1| - 0.04 13.5 2.8 0.85 9.3 0.5 2.4 2 0 0 2 2 2 0 Pro-opiomelanocortin, N-terminal region CobU PF02283.11 gi|20091899|ref|NP_617974.1| - 0.05 13.0 0.0 4.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_35 PF14516.1 gi|20091899|ref|NP_617974.1| - 0.061 11.9 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DUF835 PF05763.7 gi|20091899|ref|NP_617974.1| - 0.077 12.5 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF835) T2SE PF00437.15 gi|20091900|ref|NP_617975.1| - 5.8e-46 156.5 0.0 8.5e-46 156.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|20091900|ref|NP_617975.1| - 4.9e-05 22.7 0.0 0.00016 21.1 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|20091900|ref|NP_617975.1| - 0.017 15.3 0.0 0.067 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_17 PF13207.1 gi|20091900|ref|NP_617975.1| - 0.041 14.7 0.0 1.1 10.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|20091901|ref|NP_617976.1| - 1.4e-26 92.8 4.5 1.2e-18 67.1 0.1 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F V_ATPase_I PF01496.14 gi|20091902|ref|NP_617977.1| - 0.49 8.1 1.9 0.6 7.8 1.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|20091902|ref|NP_617977.1| - 0.62 9.5 7.2 1.3 8.5 5.0 1.5 1 0 0 1 1 1 0 Septum formation initiator DUF4337 PF14235.1 gi|20091902|ref|NP_617977.1| - 1.9 8.2 3.7 3.9 7.2 2.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Aconitase PF00330.15 gi|20091903|ref|NP_617978.1| - 4.8e-90 302.2 0.9 4e-62 210.2 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|20091903|ref|NP_617978.1| - 0.04 12.4 0.0 0.061 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PEGA PF08308.6 gi|20091904|ref|NP_617979.1| - 5.6e-21 74.1 0.2 1.3e-20 72.9 0.1 1.6 1 0 0 1 1 1 1 PEGA domain CarboxypepD_reg PF13620.1 gi|20091904|ref|NP_617979.1| - 0.0015 18.5 0.1 0.0066 16.4 0.0 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Disaggr_repeat PF06848.6 gi|20091905|ref|NP_617980.1| - 5.9e-182 599.4 7.3 1.9e-93 310.9 0.8 2.5 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|20091905|ref|NP_617980.1| - 5e-84 280.6 14.6 5e-84 280.6 10.1 3.9 3 1 1 4 4 4 2 Disaggregatase related Beta_helix PF13229.1 gi|20091905|ref|NP_617980.1| - 1.7e-15 57.0 37.4 1.6e-11 44.2 11.0 4.0 1 1 1 2 2 2 2 Right handed beta helix region TGFb_propeptide PF00688.13 gi|20091905|ref|NP_617980.1| - 1.1e-07 31.3 0.0 0.26 10.5 0.0 4.1 4 0 0 4 4 4 3 TGF-beta propeptide PhoU PF01895.14 gi|20091906|ref|NP_617981.1| - 3.3e-15 56.2 4.3 6e-12 45.8 1.0 2.7 2 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|20091906|ref|NP_617981.1| - 1.5e-06 27.7 0.0 3.9e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE RNA_bind_2 PF10133.4 gi|20091906|ref|NP_617981.1| - 0.14 12.2 2.0 23 5.1 0.1 3.2 3 0 0 3 3 3 0 Predicted RNA-binding protein SUR7 PF06687.7 gi|20091907|ref|NP_617982.1| - 0.014 14.9 2.3 0.018 14.6 1.6 1.2 1 0 0 1 1 1 0 SUR7/PalI family Polysacc_synt_3 PF13440.1 gi|20091908|ref|NP_617983.1| - 0.0059 16.1 4.5 0.0069 15.8 3.1 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein UPF0104 PF03706.8 gi|20091908|ref|NP_617983.1| - 0.011 15.0 1.2 0.012 14.9 0.8 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) IncA PF04156.9 gi|20091908|ref|NP_617983.1| - 0.041 13.4 0.1 0.049 13.2 0.1 1.0 1 0 0 1 1 1 0 IncA protein HlyIII PF03006.15 gi|20091908|ref|NP_617983.1| - 0.066 12.6 2.7 0.076 12.4 1.8 1.0 1 0 0 1 1 1 0 Haemolysin-III related NfeD PF01957.13 gi|20091908|ref|NP_617983.1| - 0.13 12.4 0.6 0.14 12.2 0.4 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Baculo_11_kDa PF06143.6 gi|20091908|ref|NP_617983.1| - 0.35 10.2 3.7 0.2 11.0 0.4 1.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family ABC2_membrane_3 PF12698.2 gi|20091908|ref|NP_617983.1| - 0.82 8.6 5.0 0.93 8.4 3.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein RDD PF06271.7 gi|20091908|ref|NP_617983.1| - 2.2 8.1 5.1 2.7 7.8 3.5 1.1 1 0 0 1 1 1 0 RDD family DUF4131 PF13567.1 gi|20091908|ref|NP_617983.1| - 3 7.2 6.4 4.4 6.6 4.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) CARDB PF07705.6 gi|20091909|ref|NP_617984.1| - 2.9e-06 27.2 0.1 0.61 10.1 0.0 4.2 3 1 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|20091909|ref|NP_617984.1| - 0.11 12.5 2.2 0.14 12.1 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function DUF11 FGE-sulfatase PF03781.11 gi|20091910|ref|NP_617985.1| - 9.8e-50 169.3 3.1 8.1e-49 166.3 2.1 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 PBP_like_2 PF12849.2 gi|20091911|ref|NP_617986.1| - 2.5e-22 79.6 10.5 3.5e-22 79.1 7.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|20091911|ref|NP_617986.1| - 3.9e-08 32.4 0.6 7.2e-08 31.6 0.4 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|20091911|ref|NP_617986.1| - 1.5e-05 24.9 0.9 3.2e-05 23.7 0.6 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|20091911|ref|NP_617986.1| - 0.00017 21.2 0.8 0.00027 20.6 0.6 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|20091911|ref|NP_617986.1| - 0.0022 18.7 7.9 0.0082 16.8 5.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) BPD_transp_1 PF00528.17 gi|20091912|ref|NP_617987.1| - 4.5e-19 68.6 14.7 4.5e-19 68.6 10.2 2.7 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|20091913|ref|NP_617988.1| - 6.4e-21 74.7 13.3 6.4e-21 74.7 9.2 2.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component T2SE PF00437.15 gi|20091914|ref|NP_617989.1| - 5.5e-48 163.2 0.0 8.9e-48 162.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SF PF00482.18 gi|20091915|ref|NP_617990.1| - 5.5e-13 48.9 2.3 5.5e-13 48.9 1.6 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F T2SF PF00482.18 gi|20091916|ref|NP_617991.1| - 2.3e-11 43.6 0.4 2.3e-11 43.6 0.3 1.9 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Big_1 PF02369.11 gi|20091916|ref|NP_617991.1| - 3.3e-07 30.1 2.8 8.8e-07 28.7 1.9 1.7 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|20091916|ref|NP_617991.1| - 0.0047 16.9 3.1 0.012 15.6 2.2 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain KaiC PF06745.8 gi|20091917|ref|NP_617992.1| - 1.7e-13 50.2 0.0 2.3e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|20091917|ref|NP_617992.1| - 0.00059 18.2 0.0 0.053 11.8 0.0 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein REJ PF02010.10 gi|20091918|ref|NP_617993.1| - 0.48 8.6 6.1 2.3 6.4 0.5 2.2 1 1 0 2 2 2 0 REJ domain NosD PF05048.8 gi|20091919|ref|NP_617994.1| - 7.7e-125 414.7 134.4 2.1e-52 177.6 30.2 4.9 3 2 2 5 5 5 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091919|ref|NP_617994.1| - 6.4e-49 165.7 144.4 9.1e-20 71.0 21.6 6.8 2 2 3 6 6 6 5 Right handed beta helix region PKD PF00801.15 gi|20091919|ref|NP_617994.1| - 4.6e-11 42.3 3.7 1.7e-10 40.4 2.6 2.0 1 0 0 1 1 1 1 PKD domain Pectate_lyase_3 PF12708.2 gi|20091919|ref|NP_617994.1| - 6.7e-07 29.6 14.9 6.7e-07 29.6 10.3 5.8 2 2 3 5 5 5 3 Pectate lyase superfamily protein DUF3169 PF11368.3 gi|20091919|ref|NP_617994.1| - 0.36 9.9 0.1 0.66 9.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) Arc_PepC_II PF06847.6 gi|20091920|ref|NP_617995.1| - 1.1e-29 102.6 0.1 2e-29 101.8 0.0 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|20091920|ref|NP_617995.1| - 1.4e-13 50.9 10.7 1.4e-13 50.9 7.4 2.2 1 1 1 2 2 2 1 Type IV leader peptidase family LMWPc PF01451.16 gi|20091921|ref|NP_617996.1| - 6.3e-28 97.8 0.1 7.3e-28 97.6 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF1488 PF07369.6 gi|20091921|ref|NP_617996.1| - 0.14 11.9 0.1 0.42 10.4 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1488) PhoU PF01895.14 gi|20091922|ref|NP_617997.1| - 3.2e-22 78.7 10.7 2e-17 63.4 1.6 2.7 2 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|20091922|ref|NP_617997.1| - 3e-08 33.1 0.0 8.7e-08 31.7 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2795 PF11387.3 gi|20091923|ref|NP_617998.1| - 3.2e-17 62.1 0.0 4.5e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) B5 PF03484.10 gi|20091923|ref|NP_617998.1| - 0.18 11.6 0.4 5.5 6.9 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetase B5 domain DUF2795 PF11387.3 gi|20091925|ref|NP_618000.1| - 7.5e-18 64.1 0.0 9.6e-18 63.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) Na_H_Exchanger PF00999.16 gi|20091926|ref|NP_618001.1| - 2e-70 237.2 56.4 2.7e-70 236.8 39.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|20091926|ref|NP_618001.1| - 1.5e-24 86.1 0.7 3.6e-24 84.9 0.5 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|20091926|ref|NP_618001.1| - 8.6e-19 66.9 0.1 1.9e-18 65.7 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain DUF3270 PF11674.3 gi|20091926|ref|NP_618001.1| - 6.5 6.8 11.6 0.43 10.6 0.4 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF3270) PsbW PF07123.7 gi|20091928|ref|NP_618003.1| - 0.029 14.4 0.3 0.037 14.0 0.2 1.2 1 0 0 1 1 1 0 Photosystem II reaction centre W protein (PsbW) SHR3_chaperone PF08229.6 gi|20091928|ref|NP_618003.1| - 0.037 12.9 0.0 0.044 12.7 0.0 1.1 1 0 0 1 1 1 0 ER membrane protein SH3 DUF308 PF03729.8 gi|20091928|ref|NP_618003.1| - 0.04 13.9 6.6 0.049 13.6 4.6 1.1 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF659 PF04937.10 gi|20091928|ref|NP_618003.1| - 0.059 12.8 0.1 0.069 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) SpoIISA_toxin PF14171.1 gi|20091928|ref|NP_618003.1| - 0.084 12.1 0.3 0.083 12.1 0.2 1.0 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system DUF457 PF04307.9 gi|20091929|ref|NP_618004.1| - 6.8e-14 51.4 2.0 7.8e-14 51.2 1.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2227 PF09988.4 gi|20091929|ref|NP_618004.1| - 0.042 13.4 1.2 3.9 7.0 0.8 2.6 1 1 0 1 1 1 0 Uncharacterized metal-binding protein (DUF2227) Pyridox_oxidase PF01243.15 gi|20091931|ref|NP_618006.1| - 9.7e-11 41.5 0.0 1.3e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Acetyltransf_1 PF00583.19 gi|20091932|ref|NP_618007.1| - 1.4e-12 47.4 0.0 2.1e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20091932|ref|NP_618007.1| - 1e-08 35.2 0.0 1.6e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20091932|ref|NP_618007.1| - 2.9e-07 30.5 0.0 3.6e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20091932|ref|NP_618007.1| - 8.8e-05 22.1 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20091932|ref|NP_618007.1| - 0.0044 16.9 0.0 0.0069 16.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20091932|ref|NP_618007.1| - 0.031 14.4 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|20091932|ref|NP_618007.1| - 0.038 13.5 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MULE PF10551.4 gi|20091933|ref|NP_618008.1| - 9.5e-13 48.1 0.1 2.4e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20091933|ref|NP_618008.1| - 0.022 13.3 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20091933|ref|NP_618008.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20091933|ref|NP_618008.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20091933|ref|NP_618008.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20091933|ref|NP_618008.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20091933|ref|NP_618008.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20091933|ref|NP_618008.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger UPF0228 PF05727.6 gi|20091935|ref|NP_618010.1| - 7.4e-44 148.5 4.9 1.2e-43 147.8 3.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) ETRAMP PF09716.5 gi|20091935|ref|NP_618010.1| - 0.042 13.8 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Lactonase PF10282.4 gi|20091936|ref|NP_618011.1| - 6.6e-12 45.1 0.3 9.8e-08 31.4 0.1 2.6 1 1 0 2 2 2 2 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|20091936|ref|NP_618011.1| - 1.5e-06 27.7 2.7 0.0059 16.0 0.5 2.8 1 1 0 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|20091936|ref|NP_618011.1| - 8.2e-06 24.3 0.3 0.034 12.4 0.1 2.2 1 1 1 2 2 2 2 Cytochrome D1 heme domain PQQ_3 PF13570.1 gi|20091936|ref|NP_618011.1| - 1.1e-05 25.5 7.6 0.27 11.5 0.6 3.8 3 0 0 3 3 3 2 PQQ-like domain PQQ PF01011.16 gi|20091936|ref|NP_618011.1| - 0.00036 19.9 1.4 0.075 12.5 0.1 3.2 3 0 0 3 3 3 1 PQQ enzyme repeat Arylesterase PF01731.15 gi|20091936|ref|NP_618011.1| - 0.0059 16.5 3.0 7.1 6.6 0.0 3.8 2 2 2 4 4 4 1 Arylesterase DUF4340 PF14238.1 gi|20091936|ref|NP_618011.1| - 0.011 15.4 10.1 3.4 7.3 0.3 4.2 2 2 3 5 5 5 0 Domain of unknown function (DUF4340) PD40 PF07676.7 gi|20091936|ref|NP_618011.1| - 0.018 14.7 0.0 0.74 9.5 0.0 2.8 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat Me-amine-dh_H PF06433.6 gi|20091936|ref|NP_618011.1| - 0.02 13.5 0.4 0.52 8.9 0.0 2.7 2 1 1 3 3 3 0 Methylamine dehydrogenase heavy chain (MADH) DUF1513 PF07433.6 gi|20091936|ref|NP_618011.1| - 0.051 12.4 0.1 0.2 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1513) PBCV_basic_adap PF08789.5 gi|20091936|ref|NP_618011.1| - 0.083 12.5 1.3 2.4 7.8 0.0 3.7 5 0 0 5 5 5 0 PBCV-specific basic adaptor domain CW_binding_2 PF04122.7 gi|20091936|ref|NP_618011.1| - 0.096 12.8 0.3 0.096 12.8 0.2 2.8 1 1 2 3 3 3 0 Putative cell wall binding repeat 2 NHL PF01436.16 gi|20091936|ref|NP_618011.1| - 0.75 9.8 14.8 1.8 8.6 0.2 5.3 5 1 1 6 6 6 0 NHL repeat UPF0228 PF05727.6 gi|20091937|ref|NP_618012.1| - 2.5e-52 175.9 4.5 3.4e-52 175.5 3.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) DUF963 PF06131.6 gi|20091937|ref|NP_618012.1| - 1.4e-17 62.6 56.5 1e-12 47.0 17.7 2.1 1 1 1 2 2 2 2 Schizosaccharomyces pombe repeat of unknown function (DUF963) DUF3601 PF12208.3 gi|20091937|ref|NP_618012.1| - 0.021 14.7 0.1 0.047 13.6 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3601) DUF3244 PF11589.3 gi|20091937|ref|NP_618012.1| - 0.048 13.3 0.6 0.093 12.4 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) Lactonase PF10282.4 gi|20091938|ref|NP_618013.1| - 3.2e-19 69.2 5.3 5.7e-07 28.9 0.8 4.4 2 2 2 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.11 gi|20091938|ref|NP_618013.1| - 5.8e-12 44.5 5.0 0.00032 19.1 0.7 3.3 1 1 2 3 3 3 3 Cytochrome D1 heme domain SGL PF08450.7 gi|20091938|ref|NP_618013.1| - 6.1e-11 42.1 8.3 0.00023 20.6 0.6 5.0 1 1 2 4 4 4 4 SMP-30/Gluconolaconase/LRE-like region NHL PF01436.16 gi|20091938|ref|NP_618013.1| - 3.3e-08 33.0 22.1 0.74 9.8 0.0 8.3 7 1 1 8 8 8 3 NHL repeat Arylesterase PF01731.15 gi|20091938|ref|NP_618013.1| - 5.6e-07 29.4 10.9 0.7 9.9 0.0 6.1 1 1 4 7 7 7 3 Arylesterase PQQ_3 PF13570.1 gi|20091938|ref|NP_618013.1| - 1.1e-06 28.6 18.9 0.43 10.9 0.6 6.2 6 0 0 6 6 6 3 PQQ-like domain PD40 PF07676.7 gi|20091938|ref|NP_618013.1| - 0.00026 20.5 1.5 0.9 9.2 0.0 4.1 4 0 0 4 4 3 1 WD40-like Beta Propeller Repeat SBP56 PF05694.6 gi|20091938|ref|NP_618013.1| - 0.0025 16.3 0.1 0.52 8.7 0.0 3.7 2 1 2 4 4 4 1 56kDa selenium binding protein (SBP56) Me-amine-dh_H PF06433.6 gi|20091938|ref|NP_618013.1| - 0.003 16.2 7.8 0.32 9.5 0.0 4.6 1 1 4 6 6 6 2 Methylamine dehydrogenase heavy chain (MADH) PBCV_basic_adap PF08789.5 gi|20091938|ref|NP_618013.1| - 0.0081 15.7 7.0 17 5.2 0.0 6.0 7 0 0 7 7 7 0 PBCV-specific basic adaptor domain DUF4340 PF14238.1 gi|20091938|ref|NP_618013.1| - 0.016 14.8 12.7 5.2 6.7 0.1 5.2 4 2 2 6 6 6 0 Domain of unknown function (DUF4340) Coatomer_WDAD PF04053.9 gi|20091938|ref|NP_618013.1| - 0.053 12.3 7.7 1.1 7.9 5.3 2.5 1 1 0 1 1 1 0 Coatomer WD associated region PQQ PF01011.16 gi|20091938|ref|NP_618013.1| - 0.094 12.2 12.5 0.15 11.6 0.1 5.1 6 0 0 6 6 6 0 PQQ enzyme repeat Thioredox_DsbH PF03190.10 gi|20091938|ref|NP_618013.1| - 0.11 12.2 0.1 12 5.6 0.0 3.2 3 1 1 4 4 4 0 Protein of unknown function, DUF255 DUF3285 PF11688.3 gi|20091938|ref|NP_618013.1| - 0.13 11.8 0.1 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) DUF1513 PF07433.6 gi|20091938|ref|NP_618013.1| - 1.6 7.5 5.5 6.1 5.6 0.1 3.4 2 1 1 4 4 4 0 Protein of unknown function (DUF1513) Peptidase_C39_2 PF13529.1 gi|20091939|ref|NP_618014.1| - 1.5e-14 54.5 0.8 1.5e-14 54.5 0.5 2.1 2 1 0 2 2 2 1 Peptidase_C39 like family Peptidase_C39 PF03412.10 gi|20091939|ref|NP_618014.1| - 0.073 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Peptidase C39 family ABC2_membrane_3 PF12698.2 gi|20091939|ref|NP_618014.1| - 0.093 11.7 0.5 0.71 8.8 0.0 2.5 3 0 0 3 3 3 0 ABC-2 family transporter protein Lactonase PF10282.4 gi|20091940|ref|NP_618015.1| - 2.8e-19 69.3 5.3 6e-10 38.7 0.5 4.3 1 1 2 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.11 gi|20091940|ref|NP_618015.1| - 1.9e-10 39.6 5.4 1.3e-05 23.6 0.6 2.7 1 1 2 3 3 3 2 Cytochrome D1 heme domain SGL PF08450.7 gi|20091940|ref|NP_618015.1| - 1.2e-08 34.6 6.9 0.0013 18.1 0.2 4.2 1 1 2 3 3 3 3 SMP-30/Gluconolaconase/LRE-like region NHL PF01436.16 gi|20091940|ref|NP_618015.1| - 7.1e-07 28.8 16.9 0.11 12.4 0.1 7.6 8 0 0 8 8 8 3 NHL repeat Arylesterase PF01731.15 gi|20091940|ref|NP_618015.1| - 0.00018 21.4 8.8 0.67 9.9 0.1 4.9 2 2 3 5 5 5 2 Arylesterase PD40 PF07676.7 gi|20091940|ref|NP_618015.1| - 0.0048 16.5 0.0 25 4.6 0.0 4.1 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat Acyl-CoA_dh_M PF02770.14 gi|20091940|ref|NP_618015.1| - 0.13 11.8 11.8 16 5.1 0.1 6.2 5 2 2 7 7 7 0 Acyl-CoA dehydrogenase, middle domain DUF1935 PF09149.5 gi|20091940|ref|NP_618015.1| - 0.19 11.6 2.9 8.2 6.4 0.1 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1935) Sulf_coat_C PF12193.3 gi|20091940|ref|NP_618015.1| - 0.32 10.8 7.5 2.3 8.0 0.1 3.7 3 1 0 3 3 3 0 Sulfolobus virus coat protein C terminal PQQ_3 PF13570.1 gi|20091940|ref|NP_618015.1| - 0.34 11.2 23.4 13 6.2 0.0 6.8 6 1 1 7 7 7 0 PQQ-like domain IstB_IS21 PF01695.12 gi|20091941|ref|NP_618016.1| - 2.1e-68 229.2 0.0 3.1e-68 228.6 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20091941|ref|NP_618016.1| - 6.7e-05 23.0 0.1 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20091941|ref|NP_618016.1| - 0.00017 21.3 0.0 0.00033 20.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein PhoH PF02562.11 gi|20091941|ref|NP_618016.1| - 0.00035 19.8 0.0 0.00055 19.2 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20091941|ref|NP_618016.1| - 0.00052 20.0 0.1 0.0028 17.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20091941|ref|NP_618016.1| - 0.00081 20.2 1.3 0.0032 18.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20091941|ref|NP_618016.1| - 0.0015 17.9 0.1 0.0033 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|20091941|ref|NP_618016.1| - 0.0017 18.5 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RuvB_N PF05496.7 gi|20091941|ref|NP_618016.1| - 0.0049 15.9 0.0 0.0077 15.3 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|20091941|ref|NP_618016.1| - 0.0053 16.8 0.1 0.89 9.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20091941|ref|NP_618016.1| - 0.02 14.7 0.5 0.065 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|20091941|ref|NP_618016.1| - 0.022 13.9 0.0 0.038 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|20091941|ref|NP_618016.1| - 0.022 13.9 0.1 0.091 11.9 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|20091941|ref|NP_618016.1| - 0.054 13.4 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20091941|ref|NP_618016.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20091941|ref|NP_618016.1| - 0.079 12.3 3.0 0.19 11.1 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20091941|ref|NP_618016.1| - 0.084 12.8 0.1 0.2 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|20091941|ref|NP_618016.1| - 0.084 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|20091941|ref|NP_618016.1| - 0.23 11.7 2.3 0.25 11.6 0.1 2.2 2 2 0 2 2 2 0 AAA domain rve PF00665.21 gi|20091942|ref|NP_618017.1| - 6.5e-20 71.4 0.0 1.2e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091942|ref|NP_618017.1| - 5.1e-05 22.7 0.0 0.00013 21.4 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20091942|ref|NP_618017.1| - 0.0018 17.7 0.0 0.0047 16.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|20091942|ref|NP_618017.1| - 0.0056 16.2 0.1 0.014 14.9 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.1 gi|20091942|ref|NP_618017.1| - 0.011 15.3 0.1 0.06 13.0 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20091942|ref|NP_618017.1| - 0.015 14.7 0.0 0.038 13.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|20091942|ref|NP_618017.1| - 0.026 14.1 0.0 0.54 9.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20091942|ref|NP_618017.1| - 0.042 13.4 0.1 0.096 12.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.10 gi|20091942|ref|NP_618017.1| - 0.047 13.5 0.2 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|20091942|ref|NP_618017.1| - 0.076 13.1 0.0 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|20091942|ref|NP_618017.1| - 0.086 12.4 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF746 PF05344.6 gi|20091942|ref|NP_618017.1| - 0.093 12.2 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|20091942|ref|NP_618017.1| - 0.097 12.6 0.0 0.64 10.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|20091942|ref|NP_618017.1| - 0.18 11.2 0.6 0.45 9.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding UPF0228 PF05727.6 gi|20091943|ref|NP_618018.1| - 4e-55 184.9 5.6 5.6e-55 184.5 3.9 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) ETRAMP PF09716.5 gi|20091943|ref|NP_618018.1| - 0.00024 21.0 0.0 0.00053 19.8 0.0 1.5 1 0 0 1 1 1 1 Malarial early transcribed membrane protein (ETRAMP) DUF3837 PF12939.2 gi|20091943|ref|NP_618018.1| - 0.047 13.6 0.2 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3837) CCG PF02754.11 gi|20091944|ref|NP_618019.1| - 5.9e-18 64.6 7.1 1.3e-08 34.7 1.6 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|20091945|ref|NP_618020.1| - 4.7e-11 42.5 8.2 5.2e-11 42.4 4.9 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20091945|ref|NP_618020.1| - 5.3e-09 36.2 8.6 1.3e-08 35.0 6.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091945|ref|NP_618020.1| - 1.3e-07 31.7 7.6 3.4e-07 30.4 5.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20091945|ref|NP_618020.1| - 2.1e-06 28.0 7.4 4.1e-06 27.0 5.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20091945|ref|NP_618020.1| - 3.6e-06 26.6 8.5 1.2e-05 25.0 6.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091945|ref|NP_618020.1| - 7.7e-05 23.0 5.1 0.0032 17.8 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091945|ref|NP_618020.1| - 0.00015 21.4 11.0 0.00019 21.1 2.5 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20091945|ref|NP_618020.1| - 0.00025 21.1 2.3 0.00025 21.1 1.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20091945|ref|NP_618020.1| - 0.00053 19.7 2.9 0.00053 19.7 2.0 2.0 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4 PF00037.22 gi|20091945|ref|NP_618020.1| - 0.00092 18.7 11.5 0.0012 18.3 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20091945|ref|NP_618020.1| - 0.0036 17.1 7.4 0.0093 15.7 5.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain DUF2089 PF09862.4 gi|20091945|ref|NP_618020.1| - 0.019 14.7 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Fer4_13 PF13370.1 gi|20091945|ref|NP_618020.1| - 0.057 13.8 0.4 0.057 13.8 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|20091945|ref|NP_618020.1| - 0.2 12.2 0.3 0.2 12.2 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|20091945|ref|NP_618020.1| - 0.29 11.9 13.2 1.9 9.2 8.5 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|20091945|ref|NP_618020.1| - 1.9 9.2 14.5 1.8 9.3 3.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20091946|ref|NP_618021.1| - 3.2e-11 43.4 30.2 0.00014 22.1 3.9 5.2 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20091946|ref|NP_618021.1| - 1.4e-10 40.3 36.9 0.00017 21.0 1.9 5.6 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20091946|ref|NP_618021.1| - 2e-10 40.0 28.9 9.4e-05 22.1 2.2 5.1 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|20091946|ref|NP_618021.1| - 3.2e-10 40.2 0.0 5.5e-09 36.1 0.0 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|20091946|ref|NP_618021.1| - 1.6e-09 37.1 0.0 1.8e-06 27.0 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|20091946|ref|NP_618021.1| - 4.4e-09 36.6 0.3 1.6e-05 25.0 0.1 3.5 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase FlpD PF02662.11 gi|20091946|ref|NP_618021.1| - 1.1e-08 34.7 0.1 5.8e-07 29.2 0.0 3.4 3 1 0 3 3 2 1 Methyl-viologen-reducing hydrogenase, delta subunit FAD_oxidored PF12831.2 gi|20091946|ref|NP_618021.1| - 1.4e-08 34.2 0.1 2.3e-08 33.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|20091946|ref|NP_618021.1| - 8.3e-08 32.1 0.1 1.9e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|20091946|ref|NP_618021.1| - 3.5e-07 29.4 0.8 1.1e-06 27.8 0.6 1.7 2 0 0 2 2 2 1 FAD binding domain Fer4_10 PF13237.1 gi|20091946|ref|NP_618021.1| - 2e-06 27.4 27.5 9.1e-05 22.1 8.1 3.9 4 1 0 4 4 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091946|ref|NP_618021.1| - 4.3e-06 26.3 34.6 0.0051 16.6 2.5 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20091946|ref|NP_618021.1| - 6.1e-06 26.8 23.9 0.014 16.1 0.1 5.0 5 0 0 5 5 4 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|20091946|ref|NP_618021.1| - 9e-06 25.8 40.1 0.002 18.3 9.3 4.5 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20091946|ref|NP_618021.1| - 1e-05 25.7 23.2 0.0081 16.4 0.9 5.2 5 0 0 5 5 4 3 4Fe-4S dicluster domain GIDA PF01134.17 gi|20091946|ref|NP_618021.1| - 1.7e-05 23.8 0.3 3.1e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_8 PF13183.1 gi|20091946|ref|NP_618021.1| - 3.5e-05 23.7 31.3 8.8e-05 22.4 1.2 5.0 4 1 1 5 5 4 2 4Fe-4S dicluster domain Thi4 PF01946.12 gi|20091946|ref|NP_618021.1| - 4.8e-05 22.5 0.1 9.3e-05 21.6 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|20091946|ref|NP_618021.1| - 0.0001 22.6 0.5 0.021 15.1 0.1 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_21 PF14697.1 gi|20091946|ref|NP_618021.1| - 0.00028 20.6 39.9 0.0045 16.8 4.5 4.8 4 1 0 4 4 4 3 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|20091946|ref|NP_618021.1| - 0.00064 18.8 0.7 0.0012 18.0 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|20091946|ref|NP_618021.1| - 0.00094 17.7 1.8 0.0018 16.8 1.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.19 gi|20091946|ref|NP_618021.1| - 0.0065 15.5 0.0 0.014 14.5 0.0 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Fer4_18 PF13746.1 gi|20091946|ref|NP_618021.1| - 0.012 16.0 1.2 0.012 16.0 0.8 4.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20091946|ref|NP_618021.1| - 0.023 15.0 4.3 0.023 15.0 3.0 5.8 6 0 0 6 6 5 0 4Fe-4S binding domain Shikimate_DH PF01488.15 gi|20091946|ref|NP_618021.1| - 0.18 11.9 0.4 0.75 9.9 0.1 2.2 3 0 0 3 3 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|20091946|ref|NP_618021.1| - 0.52 9.1 2.2 3.3 6.5 0.7 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Fer4_15 PF13459.1 gi|20091946|ref|NP_618021.1| - 1.1 9.8 19.1 2.2 8.8 0.2 4.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain DUF387 PF04079.11 gi|20091947|ref|NP_618022.1| - 0.011 15.0 0.1 0.014 14.7 0.1 1.2 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) CHGN PF05679.11 gi|20091947|ref|NP_618022.1| - 0.027 13.1 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Chondroitin N-acetylgalactosaminyltransferase MRP-L20 PF12824.2 gi|20091947|ref|NP_618022.1| - 0.032 14.1 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 DUF387 PF04079.11 gi|20091948|ref|NP_618023.1| - 0.0027 17.0 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) PadR PF03551.9 gi|20091948|ref|NP_618023.1| - 0.09 12.5 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2759 PF10958.3 gi|20091950|ref|NP_618025.1| - 0.078 12.5 2.8 0.48 10.0 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2759) PKD PF00801.15 gi|20091951|ref|NP_618026.1| - 7.9e-44 147.2 48.6 1.9e-09 37.1 2.7 5.7 5 0 0 5 5 5 5 PKD domain NosD PF05048.8 gi|20091951|ref|NP_618026.1| - 8.1e-42 142.9 14.5 8.1e-42 142.9 10.1 3.6 4 0 0 4 4 4 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20091951|ref|NP_618026.1| - 8e-09 35.4 15.1 8e-09 35.4 10.5 3.1 5 0 0 5 5 5 1 Right handed beta helix region LRR_5 PF13306.1 gi|20091951|ref|NP_618026.1| - 0.0049 16.5 1.7 0.01 15.5 1.2 1.5 1 0 0 1 1 1 1 Leucine rich repeats (6 copies) Y_Y_Y PF07495.8 gi|20091951|ref|NP_618026.1| - 0.46 10.2 23.0 5.5 6.8 0.1 6.6 6 3 2 8 8 8 0 Y_Y_Y domain DUF308 PF03729.8 gi|20091952|ref|NP_618027.1| - 1.3e-22 79.5 46.7 1.3e-12 47.5 12.4 3.1 3 0 0 3 3 3 3 Short repeat of unknown function (DUF308) DUF1648 PF07853.6 gi|20091953|ref|NP_618028.1| - 1.8e-21 75.3 0.6 1.8e-21 75.3 0.4 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) SdpI PF13630.1 gi|20091953|ref|NP_618028.1| - 6.9e-18 64.1 1.9 6.9e-18 64.1 1.3 3.5 2 1 2 4 4 4 1 SdpI/YhfL protein family Ni_hydr_CYTB PF01292.15 gi|20091953|ref|NP_618028.1| - 0.003 16.9 5.7 0.0039 16.5 1.7 2.1 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 CopD PF05425.8 gi|20091953|ref|NP_618028.1| - 0.029 14.5 1.1 0.23 11.6 0.3 2.6 2 1 0 2 2 2 0 Copper resistance protein D DUF3139 PF11337.3 gi|20091953|ref|NP_618028.1| - 0.63 10.3 10.8 3.2 8.0 0.1 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF3139) Bap31 PF05529.7 gi|20091953|ref|NP_618028.1| - 0.99 8.8 5.0 2.7 7.3 2.4 2.2 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like Oxidored_q3 PF00499.15 gi|20091953|ref|NP_618028.1| - 6.8 6.4 13.0 4.4 7.0 4.9 2.5 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FKBP_C PF00254.23 gi|20091954|ref|NP_618029.1| - 3.5e-31 107.0 0.9 5e-31 106.5 0.6 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase RuvA_N PF01330.16 gi|20091954|ref|NP_618029.1| - 0.094 12.5 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 RuvA N terminal domain YajC PF02699.10 gi|20091954|ref|NP_618029.1| - 0.13 11.9 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit VPR PF00522.13 gi|20091954|ref|NP_618029.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 VPR/VPX protein FKBP_C PF00254.23 gi|20091955|ref|NP_618030.1| - 1.5e-30 105.0 0.0 2.6e-30 104.2 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP_C PF00254.23 gi|20091956|ref|NP_618031.1| - 1.2e-23 82.9 0.2 1.8e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase tRNA_anti-codon PF01336.20 gi|20091957|ref|NP_618032.1| - 1.8e-06 27.6 0.1 2.8e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF3377 PF11857.3 gi|20091957|ref|NP_618032.1| - 0.08 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) NTP_transferase PF00483.18 gi|20091958|ref|NP_618033.1| - 4.2e-48 163.8 0.0 6e-48 163.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|20091958|ref|NP_618033.1| - 1.9e-20 71.3 26.6 5.8e-08 31.8 1.0 5.4 1 1 5 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20091958|ref|NP_618033.1| - 6.8e-12 44.7 23.6 4.5e-05 22.9 3.7 4.6 2 2 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|20091958|ref|NP_618033.1| - 2.9e-09 37.1 0.0 4.5e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|20091958|ref|NP_618033.1| - 0.042 12.4 4.0 0.14 10.7 0.3 2.2 1 1 1 2 2 2 0 L-fucokinase Glycos_transf_2 PF00535.21 gi|20091958|ref|NP_618033.1| - 0.057 13.0 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 UPF0104 PF03706.8 gi|20091960|ref|NP_618035.1| - 7.6e-42 143.5 21.8 1e-41 143.1 15.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) CTP_transf_1 PF01148.15 gi|20091961|ref|NP_618036.1| - 5.5e-13 49.1 18.8 7.1e-10 38.9 5.9 2.6 1 1 1 2 2 2 2 Cytidylyltransferase family VWA_2 PF13519.1 gi|20091963|ref|NP_618038.1| - 5.5e-21 75.4 7.0 1.9e-16 60.6 0.1 3.0 2 1 0 2 2 2 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|20091963|ref|NP_618038.1| - 6.5e-10 38.6 0.0 1.8e-09 37.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|20091963|ref|NP_618038.1| - 2e-06 27.6 1.3 0.00027 20.6 0.1 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain Usp PF00582.21 gi|20091963|ref|NP_618038.1| - 0.00075 19.7 0.1 1.1 9.4 0.0 2.8 2 0 0 2 2 2 2 Universal stress protein family DUF4350 PF14258.1 gi|20091963|ref|NP_618038.1| - 0.00098 19.2 1.7 0.16 12.2 0.0 3.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4350) VWA_3 PF13768.1 gi|20091963|ref|NP_618038.1| - 0.0019 17.9 0.0 0.008 15.8 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain ThuA PF06283.6 gi|20091963|ref|NP_618038.1| - 0.047 13.3 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Trehalose utilisation DUF4159 PF13709.1 gi|20091963|ref|NP_618038.1| - 0.055 12.5 0.0 0.29 10.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) BatA PF07584.6 gi|20091964|ref|NP_618039.1| - 1.7e-14 53.7 6.3 3.4e-14 52.7 4.4 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal DUF2194 PF09960.4 gi|20091964|ref|NP_618039.1| - 4.1e-07 28.4 0.0 6.9e-07 27.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2194) VWA_2 PF13519.1 gi|20091964|ref|NP_618039.1| - 2.5e-06 27.7 0.5 1e-05 25.7 0.1 2.1 2 1 0 2 2 2 1 von Willebrand factor type A domain Glyco_hydro_42M PF08532.5 gi|20091964|ref|NP_618039.1| - 0.00027 20.1 0.1 0.00051 19.2 0.1 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain ThuA PF06283.6 gi|20091964|ref|NP_618039.1| - 0.012 15.3 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 Trehalose utilisation ABC_transp_aux PF09822.4 gi|20091964|ref|NP_618039.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF1355 PF07090.6 gi|20091964|ref|NP_618039.1| - 0.056 12.8 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) DUF58 PF01882.13 gi|20091965|ref|NP_618040.1| - 1.6e-22 79.4 0.0 3e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|20091965|ref|NP_618040.1| - 3.3e-07 30.5 0.0 4.7e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|20091965|ref|NP_618040.1| - 5.8e-07 28.8 0.1 1e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|20091965|ref|NP_618040.1| - 0.018 14.7 0.1 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Methyltransf_33 PF10017.4 gi|20091965|ref|NP_618040.1| - 0.089 12.6 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent AAA_3 PF07726.6 gi|20091966|ref|NP_618041.1| - 9.5e-64 212.8 0.1 1.5e-63 212.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|20091966|ref|NP_618041.1| - 2.6e-13 49.8 0.0 4.8e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|20091966|ref|NP_618041.1| - 8.3e-09 34.6 0.0 1.6e-08 33.7 0.0 1.4 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|20091966|ref|NP_618041.1| - 7.6e-07 29.3 0.0 1.4e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|20091966|ref|NP_618041.1| - 0.0001 21.4 0.3 0.00076 18.5 0.2 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|20091966|ref|NP_618041.1| - 0.001 18.5 0.1 0.007 15.8 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|20091966|ref|NP_618041.1| - 0.031 14.2 0.0 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|20091966|ref|NP_618041.1| - 0.087 12.3 0.0 0.17 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF3425 PF11905.3 gi|20091966|ref|NP_618041.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3425) PDT PF00800.13 gi|20091968|ref|NP_618043.1| - 3.6e-57 192.8 0.0 4.6e-57 192.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|20091968|ref|NP_618043.1| - 2.3e-10 39.7 0.0 4.3e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 ACT domain TrmB PF01978.14 gi|20091969|ref|NP_618044.1| - 2.4e-23 81.6 0.4 5.8e-23 80.3 0.3 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|20091969|ref|NP_618044.1| - 0.027 13.4 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.1 gi|20091969|ref|NP_618044.1| - 0.061 13.0 0.1 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 PLD-like domain TPR_19 PF14559.1 gi|20091969|ref|NP_618044.1| - 0.11 12.8 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat CMD PF02627.15 gi|20091970|ref|NP_618045.1| - 9.6e-19 67.0 0.1 1.2e-18 66.6 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|20091970|ref|NP_618045.1| - 0.0048 15.6 0.0 0.0053 15.5 0.0 1.0 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) SapB_1 PF05184.10 gi|20091970|ref|NP_618045.1| - 0.066 13.0 2.0 0.11 12.3 0.7 1.9 2 1 0 2 2 2 0 Saposin-like type B, region 1 AAA_14 PF13173.1 gi|20091971|ref|NP_618046.1| - 1.9e-37 127.9 0.0 5.3e-37 126.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|20091971|ref|NP_618046.1| - 7.1e-16 58.1 0.1 1.7e-15 56.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|20091971|ref|NP_618046.1| - 0.00021 21.0 0.2 0.093 12.4 0.0 2.3 1 1 1 2 2 2 2 Archaeal ATPase AAA PF00004.24 gi|20091971|ref|NP_618046.1| - 0.023 14.8 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mrr_cat PF04471.7 gi|20091971|ref|NP_618046.1| - 0.03 14.1 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Restriction endonuclease RNA_helicase PF00910.17 gi|20091971|ref|NP_618046.1| - 0.046 13.9 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|20091971|ref|NP_618046.1| - 0.047 13.6 0.0 0.32 10.9 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|20091971|ref|NP_618046.1| - 0.12 12.5 0.0 0.49 10.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF488 PF04343.8 gi|20091972|ref|NP_618047.1| - 3.5e-28 98.4 0.0 6.3e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF4065 PF13274.1 gi|20091972|ref|NP_618047.1| - 0.11 13.2 5.0 0.095 13.4 1.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4065) DUF1642 PF07852.6 gi|20091972|ref|NP_618047.1| - 0.44 10.8 3.2 0.17 12.1 0.3 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1642) Trehalose_recp PF06151.8 gi|20091974|ref|NP_618049.1| - 0.0045 15.3 0.1 0.006 14.9 0.1 1.1 1 0 0 1 1 1 1 Trehalose receptor DUF86 PF01934.12 gi|20091974|ref|NP_618049.1| - 0.029 14.0 0.1 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF86 rve PF00665.21 gi|20091976|ref|NP_618051.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20091976|ref|NP_618051.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20091976|ref|NP_618051.1| - 6.8e-05 22.9 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20091976|ref|NP_618051.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20091976|ref|NP_618051.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20091976|ref|NP_618051.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Methylase_S PF01420.14 gi|20091977|ref|NP_618052.1| - 1.1e-06 28.6 0.0 1.1e-06 28.6 0.0 1.0 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Fer4_7 PF12838.2 gi|20091978|ref|NP_618053.1| - 1.8e-10 41.0 33.6 8e-07 29.3 6.4 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20091978|ref|NP_618053.1| - 2.9e-09 36.6 7.0 2.9e-09 36.6 4.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20091978|ref|NP_618053.1| - 3.9e-09 35.9 8.3 3.7e-07 29.7 2.6 3.8 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20091978|ref|NP_618053.1| - 4.2e-08 32.4 11.4 7.9e-06 25.2 3.5 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20091978|ref|NP_618053.1| - 1.5e-07 32.0 12.4 0.0001 22.9 1.8 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20091978|ref|NP_618053.1| - 5.4e-07 29.3 7.8 5.4e-07 29.3 5.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20091978|ref|NP_618053.1| - 2.1e-06 27.9 16.5 2.1e-06 27.8 5.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20091978|ref|NP_618053.1| - 0.00031 20.5 3.9 0.00031 20.5 2.7 4.0 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20091978|ref|NP_618053.1| - 0.00035 20.8 8.5 0.12 12.7 0.3 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20091978|ref|NP_618053.1| - 0.00037 21.0 12.5 0.0082 16.6 2.1 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|20091978|ref|NP_618053.1| - 0.019 14.9 15.9 0.57 10.2 2.5 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20091978|ref|NP_618053.1| - 0.029 14.6 3.6 0.029 14.6 2.5 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|20091978|ref|NP_618053.1| - 0.22 11.3 6.3 41 4.0 4.4 3.4 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.1 gi|20091978|ref|NP_618053.1| - 0.77 9.6 8.3 0.22 11.4 1.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20091978|ref|NP_618053.1| - 2.2 8.7 18.2 0.14 12.6 1.3 3.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain DUF2973 PF11189.3 gi|20091979|ref|NP_618054.1| - 0.047 13.4 0.5 0.63 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) CGGC PF08821.6 gi|20091980|ref|NP_618055.1| - 3.8e-37 126.6 0.8 4.3e-37 126.4 0.5 1.0 1 0 0 1 1 1 1 CGGC domain Cupin_2 PF07883.6 gi|20091981|ref|NP_618056.1| - 7.6e-14 50.9 0.2 1.1e-13 50.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|20091981|ref|NP_618056.1| - 0.00033 20.1 0.0 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|20091981|ref|NP_618056.1| - 0.0047 16.5 0.1 0.0057 16.2 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF4585 PF15232.1 gi|20091981|ref|NP_618056.1| - 0.023 14.5 0.1 0.16 11.8 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4585) cNMP_binding PF00027.24 gi|20091981|ref|NP_618056.1| - 0.047 13.4 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain Cupin_7 PF12973.2 gi|20091981|ref|NP_618056.1| - 0.053 13.3 0.0 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain AraC_binding PF02311.14 gi|20091981|ref|NP_618056.1| - 0.068 12.8 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Sarcolipin PF05366.6 gi|20091982|ref|NP_618057.1| - 0.16 11.4 1.1 0.26 10.7 0.8 1.3 1 0 0 1 1 1 0 Sarcolipin NIR_SIR PF01077.17 gi|20091983|ref|NP_618058.1| - 7.3e-37 126.1 0.0 1.1e-36 125.5 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|20091983|ref|NP_618058.1| - 6.1e-15 54.6 0.0 1.2e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain HxlR PF01638.12 gi|20091984|ref|NP_618059.1| - 9.2e-24 82.9 0.5 1.2e-23 82.5 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|20091984|ref|NP_618059.1| - 6.1e-05 22.7 0.1 0.00018 21.2 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|20091984|ref|NP_618059.1| - 0.0001 22.2 0.1 0.00017 21.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|20091984|ref|NP_618059.1| - 0.00019 21.4 0.3 0.00028 20.9 0.2 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_45 PF14947.1 gi|20091984|ref|NP_618059.1| - 0.0064 16.2 0.1 0.013 15.2 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix YjcQ PF09639.5 gi|20091984|ref|NP_618059.1| - 0.081 13.0 0.3 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 YjcQ protein Rrf2 PF02082.15 gi|20091984|ref|NP_618059.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator NIR_SIR PF01077.17 gi|20091985|ref|NP_618060.1| - 1e-35 122.4 0.0 1.2e-34 118.9 0.0 1.9 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|20091985|ref|NP_618060.1| - 1.4e-16 59.8 0.0 3e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Succ_CoA_lig PF13607.1 gi|20091986|ref|NP_618061.1| - 5.4e-50 168.5 1.0 3.6e-49 165.8 0.4 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|20091986|ref|NP_618061.1| - 8.7e-23 80.6 0.0 7e-22 77.7 0.0 2.4 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|20091986|ref|NP_618061.1| - 5e-14 52.5 0.0 2.8e-12 46.9 0.0 3.4 4 0 0 4 4 4 1 CoA binding domain F420_oxidored PF03807.12 gi|20091986|ref|NP_618061.1| - 0.046 14.1 0.7 0.89 10.0 0.1 3.4 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent HEM4 PF02602.10 gi|20091986|ref|NP_618061.1| - 0.062 12.5 0.0 0.51 9.5 0.0 2.4 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Peripla_BP_3 PF13377.1 gi|20091986|ref|NP_618061.1| - 0.089 12.7 0.0 0.59 10.1 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein-like domain SAP PF02037.22 gi|20091986|ref|NP_618061.1| - 0.097 12.2 1.3 5 6.7 0.1 3.2 3 0 0 3 3 3 0 SAP domain DUF2095 PF09868.4 gi|20091986|ref|NP_618061.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) NAD_Gly3P_dh_N PF01210.18 gi|20091986|ref|NP_618061.1| - 0.12 12.1 0.0 0.32 10.7 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ELFV_dehydrog PF00208.16 gi|20091987|ref|NP_618062.1| - 4.1e-60 203.3 0.0 5.2e-60 203.0 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|20091987|ref|NP_618062.1| - 2.7e-31 107.8 0.0 4e-31 107.3 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Bac_GDH PF05088.7 gi|20091987|ref|NP_618062.1| - 0.0019 15.7 0.0 0.0026 15.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|20091987|ref|NP_618062.1| - 0.0096 15.0 0.1 0.021 13.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|20091987|ref|NP_618062.1| - 0.038 13.8 0.1 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF4486 PF14858.1 gi|20091987|ref|NP_618062.1| - 0.19 9.9 0.0 0.23 9.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4486) Methyltransf_12 PF08242.7 gi|20091988|ref|NP_618063.1| - 3.4e-15 56.3 0.0 6.5e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20091988|ref|NP_618063.1| - 2.5e-14 53.1 0.0 4.4e-14 52.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20091988|ref|NP_618063.1| - 3.2e-13 49.9 0.0 1.4e-11 44.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20091988|ref|NP_618063.1| - 3.4e-13 49.6 0.0 7.2e-13 48.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20091988|ref|NP_618063.1| - 1.4e-12 47.2 0.0 2.7e-12 46.3 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|20091988|ref|NP_618063.1| - 2e-10 40.9 0.0 4.3e-10 39.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20091988|ref|NP_618063.1| - 2.2e-10 41.1 0.0 3.8e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20091988|ref|NP_618063.1| - 2e-07 30.3 0.0 2.8e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|20091988|ref|NP_618063.1| - 1e-06 28.2 0.0 1.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20091988|ref|NP_618063.1| - 4.5e-06 26.3 0.0 6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|20091988|ref|NP_618063.1| - 1.7e-05 23.9 0.0 2.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase TehB PF03848.9 gi|20091988|ref|NP_618063.1| - 3.8e-05 22.9 0.0 7e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|20091988|ref|NP_618063.1| - 0.00021 21.3 0.0 0.0005 20.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20091988|ref|NP_618063.1| - 0.0013 18.1 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DREV PF05219.7 gi|20091988|ref|NP_618063.1| - 0.0031 16.4 0.0 0.0043 15.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase LCM PF04072.9 gi|20091988|ref|NP_618063.1| - 0.0045 16.5 0.0 0.0066 16.0 0.0 1.3 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Methyltransf_PK PF05891.7 gi|20091988|ref|NP_618063.1| - 0.007 15.6 0.0 0.01 15.1 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase PrmA PF06325.8 gi|20091988|ref|NP_618063.1| - 0.022 13.9 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|20091988|ref|NP_618063.1| - 0.023 14.1 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|20091988|ref|NP_618063.1| - 0.045 13.3 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase B5 PF03484.10 gi|20091988|ref|NP_618063.1| - 0.078 12.8 0.0 0.33 10.8 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetase B5 domain Flu_NS2 PF00601.14 gi|20091988|ref|NP_618063.1| - 0.11 12.7 0.1 0.4 10.9 0.0 1.9 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) tRNA_U5-meth_tr PF05958.6 gi|20091988|ref|NP_618063.1| - 0.11 11.1 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.1 gi|20091988|ref|NP_618063.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.22 gi|20091989|ref|NP_618064.1| - 3.2e-30 105.2 0.0 6.7e-30 104.1 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|20091989|ref|NP_618064.1| - 7.8e-13 49.0 0.3 1.9e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20091989|ref|NP_618064.1| - 6.8e-07 28.7 0.0 0.0021 17.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20091989|ref|NP_618064.1| - 6.8e-05 22.9 1.0 0.00049 20.1 0.7 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|20091989|ref|NP_618064.1| - 0.00015 21.3 0.0 0.00037 20.0 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|20091989|ref|NP_618064.1| - 0.00028 20.3 0.0 0.00058 19.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|20091989|ref|NP_618064.1| - 0.00061 20.0 0.0 0.14 12.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|20091989|ref|NP_618064.1| - 0.00063 18.9 0.0 0.011 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|20091989|ref|NP_618064.1| - 0.00092 18.4 0.0 0.002 17.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20091989|ref|NP_618064.1| - 0.0015 19.3 0.2 0.0033 18.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|20091989|ref|NP_618064.1| - 0.0028 17.3 0.1 0.028 14.1 0.0 2.2 2 1 0 2 2 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|20091989|ref|NP_618064.1| - 0.0033 16.8 0.0 0.0092 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain 5_3_exonuc_N PF02739.11 gi|20091989|ref|NP_618064.1| - 0.0033 16.8 0.1 0.005 16.2 0.0 1.2 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain AAA_13 PF13166.1 gi|20091989|ref|NP_618064.1| - 0.0039 15.7 0.0 0.68 8.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|20091989|ref|NP_618064.1| - 0.0074 16.1 0.0 0.0092 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20091989|ref|NP_618064.1| - 0.0095 16.0 0.0 0.031 14.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|20091989|ref|NP_618064.1| - 0.03 14.2 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|20091989|ref|NP_618064.1| - 0.031 14.6 0.0 0.062 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|20091989|ref|NP_618064.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|20091989|ref|NP_618064.1| - 0.071 12.6 0.0 0.58 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|20091989|ref|NP_618064.1| - 0.091 11.4 0.0 0.18 10.4 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein RNA_helicase PF00910.17 gi|20091989|ref|NP_618064.1| - 0.1 12.8 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|20091989|ref|NP_618064.1| - 0.11 12.2 0.0 0.35 10.6 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain T2SE PF00437.15 gi|20091989|ref|NP_618064.1| - 0.11 11.3 0.2 0.31 9.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|20091989|ref|NP_618064.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|20091989|ref|NP_618064.1| - 0.14 10.6 0.0 0.2 10.0 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein CARDB PF07705.6 gi|20091990|ref|NP_618065.1| - 2.6e-09 37.0 6.4 0.018 15.0 0.1 3.6 2 1 1 3 3 3 3 CARDB NPCBM_assoc PF10633.4 gi|20091990|ref|NP_618065.1| - 2.8e-09 36.9 0.3 0.0066 16.4 0.0 4.6 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|20091990|ref|NP_618065.1| - 4e-09 36.3 4.6 6.4e-05 22.9 0.1 3.8 4 0 0 4 4 4 2 Domain of unknown function DUF11 A2M_N PF01835.14 gi|20091990|ref|NP_618065.1| - 0.00042 20.5 0.1 0.0085 16.3 0.0 3.0 2 1 2 4 4 4 1 MG2 domain DUF2393 PF09624.5 gi|20091990|ref|NP_618065.1| - 0.0013 18.2 2.4 0.01 15.3 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF2393) NEAT PF05031.7 gi|20091990|ref|NP_618065.1| - 0.076 13.0 2.0 4.6 7.2 0.4 2.6 2 0 0 2 2 2 0 Iron Transport-associated domain He_PIG PF05345.7 gi|20091990|ref|NP_618065.1| - 0.29 11.2 4.9 12 5.9 0.0 3.9 5 0 0 5 5 5 0 Putative Ig domain MacB_PCD PF12704.2 gi|20091991|ref|NP_618066.1| - 3e-46 157.8 12.2 9.3e-46 156.2 2.8 2.2 2 0 0 2 2 2 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|20091991|ref|NP_618066.1| - 6.7e-22 77.5 15.0 2.2e-21 75.8 7.2 2.3 2 0 0 2 2 2 2 FtsX-like permease family DUF4134 PF13572.1 gi|20091991|ref|NP_618066.1| - 0.0063 16.5 9.3 0.012 15.7 0.7 3.5 2 1 1 3 3 3 1 Domain of unknown function (DUF4134) Abhydrolase_6 PF12697.2 gi|20091992|ref|NP_618067.1| - 8.4e-06 25.8 0.0 1.2e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|20091992|ref|NP_618067.1| - 2.5e-05 24.0 0.0 4.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|20091992|ref|NP_618067.1| - 0.067 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Polyketide_cyc2 PF10604.4 gi|20091993|ref|NP_618068.1| - 4.8e-11 42.9 0.0 5.4e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|20091993|ref|NP_618068.1| - 0.0087 16.1 0.0 0.013 15.5 0.0 1.4 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein OB_RNB PF08206.6 gi|20091993|ref|NP_618068.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain ATP-grasp_4 PF13535.1 gi|20091994|ref|NP_618069.1| - 8.1e-33 113.6 0.0 1.4e-24 86.8 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20091994|ref|NP_618069.1| - 0.00018 20.3 0.0 0.00072 18.3 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Phage_int_SAM_4 PF13495.1 gi|20091994|ref|NP_618069.1| - 0.19 12.0 0.5 4.4 7.6 0.0 2.7 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF3901 PF13040.1 gi|20091995|ref|NP_618070.1| - 0.14 11.4 1.8 1.4 8.2 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3901) Rhodanese PF00581.15 gi|20091996|ref|NP_618071.1| - 8.7e-19 67.9 0.0 1.1e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain K_trans PF02705.11 gi|20091997|ref|NP_618072.1| - 3.8e-169 563.4 33.8 4.4e-169 563.2 23.4 1.0 1 0 0 1 1 1 1 K+ potassium transporter MatE PF01554.13 gi|20091999|ref|NP_618074.1| - 1.3e-44 151.6 34.0 1.5e-24 86.4 7.9 3.3 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|20091999|ref|NP_618074.1| - 1.3e-11 44.5 7.2 1.3e-11 44.5 5.0 4.5 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Prenyltrans_2 PF13249.1 gi|20092000|ref|NP_618075.1| - 1.1e-32 112.8 0.8 2.2e-16 60.2 0.0 2.8 3 0 0 3 3 3 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|20092000|ref|NP_618075.1| - 1.4e-17 63.6 2.5 3.5e-07 30.2 0.1 3.3 1 1 3 4 4 4 4 Prenyltransferase-like Prenyltrans PF00432.16 gi|20092000|ref|NP_618075.1| - 3.8e-07 29.5 4.7 1.2 8.7 0.0 5.3 5 0 0 5 5 5 3 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|20092000|ref|NP_618075.1| - 1e-05 24.8 1.9 0.4 9.8 0.0 3.6 3 1 1 4 4 4 2 A-macroglobulin complement component Pec_lyase PF09492.5 gi|20092000|ref|NP_618075.1| - 0.018 14.2 2.4 0.83 8.7 0.1 3.8 4 1 1 5 5 5 0 Pectic acid lyase SPASM PF13186.1 gi|20092002|ref|NP_618077.1| - 1e-10 41.8 2.3 3.2e-10 40.1 1.6 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|20092002|ref|NP_618077.1| - 3.9e-09 36.8 0.3 7.7e-09 35.9 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF240 PF03086.9 gi|20092003|ref|NP_618078.1| - 0.01 15.4 0.2 0.013 15.1 0.1 1.1 1 0 0 1 1 1 0 MG032/MG096/MG288 family 2 AF0941-like PF14591.1 gi|20092003|ref|NP_618078.1| - 0.048 13.7 0.9 0.097 12.7 0.6 1.5 1 1 0 1 1 1 0 AF0941-like DUF2039 PF10217.4 gi|20092003|ref|NP_618078.1| - 0.063 13.3 2.8 1.6 8.7 0.2 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Cupin_2 PF07883.6 gi|20092004|ref|NP_618079.1| - 7.5e-12 44.5 0.0 1.7e-11 43.4 0.0 1.6 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|20092004|ref|NP_618079.1| - 0.0006 19.2 0.0 0.0016 17.8 0.0 1.6 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|20092004|ref|NP_618079.1| - 0.0059 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain ETRAMP PF09716.5 gi|20092004|ref|NP_618079.1| - 0.051 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Cache_2 PF08269.6 gi|20092004|ref|NP_618079.1| - 0.058 13.3 0.0 0.17 11.9 0.0 1.9 1 1 0 1 1 1 0 Cache domain Auxin_BP PF02041.11 gi|20092004|ref|NP_618079.1| - 0.11 11.9 0.0 0.37 10.2 0.0 1.7 1 1 0 1 1 1 0 Auxin binding protein MarR PF01047.17 gi|20092006|ref|NP_618081.1| - 1.2e-09 37.6 0.0 2.2e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20092006|ref|NP_618081.1| - 2.5e-08 34.1 0.0 4.6e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20092006|ref|NP_618081.1| - 7.1e-06 25.5 0.0 9.8e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|20092006|ref|NP_618081.1| - 7.7e-06 25.8 0.0 2.3e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|20092006|ref|NP_618081.1| - 0.00089 19.0 0.1 0.0018 18.0 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix PadR PF03551.9 gi|20092006|ref|NP_618081.1| - 0.0083 15.8 0.0 0.021 14.5 0.0 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.14 gi|20092006|ref|NP_618081.1| - 0.035 14.0 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|20092006|ref|NP_618081.1| - 0.047 13.7 0.1 0.22 11.6 0.0 2.1 2 1 0 2 2 2 0 Penicillinase repressor HxlR PF01638.12 gi|20092006|ref|NP_618081.1| - 0.047 13.3 0.0 0.16 11.5 0.0 1.8 1 1 1 2 2 2 0 HxlR-like helix-turn-helix z-alpha PF02295.12 gi|20092006|ref|NP_618081.1| - 0.091 12.5 0.1 9.6 6.0 0.0 2.8 3 0 0 3 3 3 0 Adenosine deaminase z-alpha domain MatE PF01554.13 gi|20092007|ref|NP_618082.1| - 1.5e-56 190.4 41.0 2.7e-29 101.9 9.6 3.3 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|20092007|ref|NP_618082.1| - 6.3e-10 39.0 16.4 6.3e-10 39.0 11.4 4.5 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain UPF0047 PF01894.12 gi|20092008|ref|NP_618083.1| - 2.3e-42 143.5 0.0 2.6e-42 143.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 GATase_2 PF00310.16 gi|20092009|ref|NP_618084.1| - 3.1e-23 82.0 0.0 8.5e-16 57.6 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|20092009|ref|NP_618084.1| - 1.7e-20 72.9 0.0 2.8e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|20092009|ref|NP_618084.1| - 1.9e-19 69.9 0.0 3.6e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|20092009|ref|NP_618084.1| - 1.9e-13 50.2 0.8 4e-13 49.1 0.5 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|20092009|ref|NP_618084.1| - 2.6e-08 32.8 0.0 4.3e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|20092010|ref|NP_618085.1| - 1.4e-22 79.2 16.9 1.5e-22 79.1 11.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|20092010|ref|NP_618085.1| - 0.017 14.9 1.5 0.023 14.5 1.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|20092010|ref|NP_618085.1| - 0.031 13.7 4.4 0.03 13.8 3.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_2 PF13240.1 gi|20092010|ref|NP_618085.1| - 0.3 10.6 4.4 0.75 9.3 3.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|20092010|ref|NP_618085.1| - 0.4 9.9 4.6 4.5 6.6 3.4 2.1 1 1 2 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|20092010|ref|NP_618085.1| - 0.41 10.3 2.4 0.43 10.2 1.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|20092010|ref|NP_618085.1| - 1.3 9.0 6.0 4.5 7.3 0.2 2.2 1 1 2 3 3 3 0 Zinc ribbon domain YhfH PF14149.1 gi|20092010|ref|NP_618085.1| - 1.6 8.6 6.4 1.6 8.6 0.5 2.3 1 1 1 2 2 2 0 YhfH-like protein LSM PF01423.17 gi|20092011|ref|NP_618086.1| - 1.5e-20 72.4 0.1 1.7e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 LSM domain Phos_pyr_kin PF08543.7 gi|20092013|ref|NP_618088.1| - 4.7e-81 271.6 2.4 7.3e-81 270.9 1.7 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|20092013|ref|NP_618088.1| - 1.7e-61 206.5 0.0 2.6e-61 205.9 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|20092013|ref|NP_618088.1| - 1.8e-10 40.4 0.6 2.8e-10 39.8 0.4 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PALP PF00291.20 gi|20092014|ref|NP_618089.1| - 1.9e-37 129.1 0.0 2.6e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1699 PF08004.6 gi|20092015|ref|NP_618090.1| - 4.7e-68 226.7 0.8 5.3e-68 226.5 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) LKAAEAR PF15478.1 gi|20092015|ref|NP_618090.1| - 0.021 15.0 0.0 0.033 14.4 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif DUF1699 PF08004.6 gi|20092016|ref|NP_618091.1| - 2.3e-67 224.5 1.4 2.6e-67 224.3 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Metalloenzyme PF01676.13 gi|20092016|ref|NP_618091.1| - 0.11 11.8 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Metalloenzyme superfamily Histidinol_dh PF00815.15 gi|20092017|ref|NP_618092.1| - 1.1e-167 557.9 6.5 1.3e-167 557.6 4.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DEAD PF00270.24 gi|20092019|ref|NP_618094.1| - 6.1e-30 103.9 0.0 8e-29 100.2 0.0 2.5 2 1 1 3 3 3 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|20092019|ref|NP_618094.1| - 2e-12 47.1 2.0 1.5e-11 44.2 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|20092019|ref|NP_618094.1| - 2.8e-07 30.3 0.0 7e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|20092019|ref|NP_618094.1| - 1.6e-05 24.8 0.0 5.2e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sec63 PF02889.11 gi|20092019|ref|NP_618094.1| - 0.00012 21.4 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|20092019|ref|NP_618094.1| - 0.0043 16.5 0.0 0.013 15.0 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|20092019|ref|NP_618094.1| - 0.014 15.0 0.1 3.2 7.6 0.0 3.4 3 0 0 3 3 3 0 Helix-hairpin-helix motif gpUL132 PF11359.3 gi|20092019|ref|NP_618094.1| - 0.08 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycoprotein UL132 Cdd1 PF11731.3 gi|20092019|ref|NP_618094.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus ABC_tran PF00005.22 gi|20092020|ref|NP_618095.1| - 1.1e-38 132.6 0.1 1e-19 71.1 0.1 3.2 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|20092020|ref|NP_618095.1| - 6.7e-16 58.1 7.6 8e-06 25.2 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|20092020|ref|NP_618095.1| - 8.1e-14 52.2 2.4 2.5e-05 24.3 0.0 4.2 3 1 0 3 3 3 2 AAA domain RLI PF04068.10 gi|20092020|ref|NP_618095.1| - 6.3e-12 44.8 4.4 1.2e-11 43.9 3.0 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|20092020|ref|NP_618095.1| - 5.8e-08 32.0 4.8 5.8e-08 32.0 3.3 2.5 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20092020|ref|NP_618095.1| - 8e-06 25.5 12.4 5.2e-05 22.9 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.1 gi|20092020|ref|NP_618095.1| - 9.4e-06 25.7 0.2 0.0058 16.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20092020|ref|NP_618095.1| - 2.2e-05 24.5 0.0 0.041 13.8 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|20092020|ref|NP_618095.1| - 4.9e-05 22.7 3.2 0.067 12.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Rad17 PF03215.10 gi|20092020|ref|NP_618095.1| - 6.9e-05 21.7 0.2 0.22 10.1 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein Fer4_9 PF13187.1 gi|20092020|ref|NP_618095.1| - 0.00011 22.4 10.2 0.00021 21.4 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|20092020|ref|NP_618095.1| - 0.00013 21.4 3.7 0.022 14.1 0.0 3.3 4 0 0 4 4 4 1 AAA domain RNA_helicase PF00910.17 gi|20092020|ref|NP_618095.1| - 0.00021 21.4 0.0 0.38 10.9 0.0 2.5 2 0 0 2 2 2 1 RNA helicase Fer4_21 PF14697.1 gi|20092020|ref|NP_618095.1| - 0.00022 20.9 7.9 0.00038 20.2 5.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092020|ref|NP_618095.1| - 0.00028 21.1 9.0 0.00069 19.9 6.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain NACHT PF05729.7 gi|20092020|ref|NP_618095.1| - 0.00033 20.3 0.0 0.031 13.9 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|20092020|ref|NP_618095.1| - 0.0009 20.0 1.3 0.031 15.0 0.0 2.8 2 2 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|20092020|ref|NP_618095.1| - 0.0013 19.1 5.6 0.45 10.8 0.5 2.6 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|20092020|ref|NP_618095.1| - 0.0013 18.5 0.0 2.2 8.2 0.0 2.7 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|20092020|ref|NP_618095.1| - 0.0018 18.4 0.1 0.32 11.2 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Fer4_2 PF12797.2 gi|20092020|ref|NP_618095.1| - 0.0031 17.3 3.0 0.0031 17.3 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_14 PF13173.1 gi|20092020|ref|NP_618095.1| - 0.0034 17.2 0.6 2 8.3 0.0 3.4 3 0 0 3 3 3 1 AAA domain DUF87 PF01935.12 gi|20092020|ref|NP_618095.1| - 0.0042 16.9 0.6 1.4 8.6 0.0 3.0 3 0 0 3 3 3 1 Domain of unknown function DUF87 DUF258 PF03193.11 gi|20092020|ref|NP_618095.1| - 0.0047 16.1 7.0 0.066 12.4 0.0 2.9 3 0 0 3 3 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|20092020|ref|NP_618095.1| - 0.0068 15.5 0.4 0.091 11.7 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain Fer4_10 PF13237.1 gi|20092020|ref|NP_618095.1| - 0.0097 15.6 12.7 0.01 15.6 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Miro PF08477.8 gi|20092020|ref|NP_618095.1| - 0.014 15.8 0.3 0.22 12.0 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein VirE PF05272.6 gi|20092020|ref|NP_618095.1| - 0.015 14.8 0.1 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E MobB PF03205.9 gi|20092020|ref|NP_618095.1| - 0.021 14.5 3.2 0.34 10.6 0.0 3.2 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|20092020|ref|NP_618095.1| - 0.025 14.5 0.7 1 9.2 0.1 2.8 2 2 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|20092020|ref|NP_618095.1| - 0.025 14.0 2.4 1.1 8.6 0.0 2.7 3 1 0 3 3 3 0 AAA-like domain AAA_18 PF13238.1 gi|20092020|ref|NP_618095.1| - 0.038 14.2 2.6 7.3 6.9 0.2 3.9 3 1 0 3 3 3 0 AAA domain Fer4_16 PF13484.1 gi|20092020|ref|NP_618095.1| - 0.069 13.8 0.5 0.069 13.8 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_5 PF07728.9 gi|20092020|ref|NP_618095.1| - 0.078 12.6 1.2 12 5.5 0.0 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|20092020|ref|NP_618095.1| - 0.1 11.3 3.7 0.99 8.1 0.2 2.2 2 0 0 2 2 2 0 ArgK protein DUF4527 PF15030.1 gi|20092020|ref|NP_618095.1| - 0.1 11.8 0.0 0.88 8.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4527) Fer4_4 PF12800.2 gi|20092020|ref|NP_618095.1| - 0.14 12.5 12.7 0.11 12.9 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.10 gi|20092020|ref|NP_618095.1| - 0.14 11.8 2.8 2.4 7.8 0.0 3.0 3 0 0 3 3 3 0 NTPase AAA_24 PF13479.1 gi|20092020|ref|NP_618095.1| - 0.21 11.1 3.0 8 5.9 0.0 2.6 3 0 0 3 3 2 0 AAA domain Fer4_11 PF13247.1 gi|20092020|ref|NP_618095.1| - 0.29 11.0 4.4 0.56 10.1 3.0 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092020|ref|NP_618095.1| - 0.55 10.3 8.1 0.16 12.0 1.3 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_33 PF13671.1 gi|20092020|ref|NP_618095.1| - 0.59 10.0 4.5 1.5 8.7 0.0 3.2 4 0 0 4 4 3 0 AAA domain Fer4_3 PF12798.2 gi|20092020|ref|NP_618095.1| - 2.7 8.7 14.0 0.09 13.3 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20092020|ref|NP_618095.1| - 2.7 8.4 9.2 0.2 12.1 2.2 1.9 1 1 1 2 2 1 0 4Fe-4S dicluster domain Lactamase_B_2 PF12706.2 gi|20092022|ref|NP_618097.1| - 9e-10 38.4 0.0 1.7e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20092022|ref|NP_618097.1| - 5.5e-06 26.1 0.1 1.1e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|20092022|ref|NP_618097.1| - 0.00017 21.3 0.0 0.00053 19.7 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain HhH-GPD PF00730.20 gi|20092023|ref|NP_618098.1| - 3.8e-06 27.1 0.0 6.9e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.7 gi|20092023|ref|NP_618098.1| - 0.052 13.5 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain Nitroreductase PF00881.19 gi|20092024|ref|NP_618099.1| - 1.7e-21 76.7 0.0 2e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF1638 PF07796.6 gi|20092025|ref|NP_618100.1| - 1.1e-11 44.6 0.0 1.4e-11 44.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) ARD PF03079.9 gi|20092025|ref|NP_618100.1| - 0.029 14.3 0.0 0.031 14.2 0.0 1.1 1 0 0 1 1 1 0 ARD/ARD' family MULE PF10551.4 gi|20092026|ref|NP_618101.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain zf-MIZ PF02891.15 gi|20092026|ref|NP_618101.1| - 0.019 14.4 4.0 0.049 13.1 2.8 1.7 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger Transposase_mut PF00872.13 gi|20092026|ref|NP_618101.1| - 0.023 13.2 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20092026|ref|NP_618101.1| - 0.026 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20092026|ref|NP_618101.1| - 0.04 13.5 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20092026|ref|NP_618101.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20092026|ref|NP_618101.1| - 0.93 9.2 5.4 3.3 7.5 3.7 1.9 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PHD PF00628.24 gi|20092026|ref|NP_618101.1| - 3.1 7.5 7.9 1.2 8.8 3.1 2.1 2 1 0 2 2 2 0 PHD-finger Zn_ribbon_recom PF13408.1 gi|20092026|ref|NP_618101.1| - 5.8 7.2 10.9 0.67 10.2 3.2 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF1699 PF08004.6 gi|20092027|ref|NP_618102.1| - 2.9e-68 227.4 1.0 3.3e-68 227.2 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) PAM2 PF07145.10 gi|20092027|ref|NP_618102.1| - 0.084 12.4 0.2 11 5.7 0.0 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region KIX PF02172.11 gi|20092027|ref|NP_618102.1| - 0.1 12.6 0.1 0.2 11.7 0.1 1.6 1 0 0 1 1 1 0 KIX domain Thioredoxin PF00085.15 gi|20092028|ref|NP_618103.1| - 5.4e-25 87.0 0.0 6e-25 86.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|20092028|ref|NP_618103.1| - 1.8e-11 43.9 0.0 8.6e-09 35.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|20092028|ref|NP_618103.1| - 1.7e-10 41.1 0.1 5.2e-10 39.5 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|20092028|ref|NP_618103.1| - 2.4e-07 30.4 0.0 2.7e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|20092028|ref|NP_618103.1| - 4.3e-07 29.5 0.0 5.4e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|20092028|ref|NP_618103.1| - 7.1e-07 29.1 0.1 1.1e-06 28.4 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin Redoxin PF08534.5 gi|20092028|ref|NP_618103.1| - 1.9e-06 27.5 0.1 0.00086 18.8 0.0 2.0 1 1 1 2 2 2 2 Redoxin KaiB PF07689.7 gi|20092028|ref|NP_618103.1| - 4.2e-06 26.1 0.0 5.2e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin_7 PF13899.1 gi|20092028|ref|NP_618103.1| - 5.7e-06 26.2 0.0 8.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF836 PF05768.9 gi|20092028|ref|NP_618103.1| - 3.1e-05 24.1 0.0 3.7e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.1 gi|20092028|ref|NP_618103.1| - 7.7e-05 22.2 0.0 0.0001 21.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.6 gi|20092028|ref|NP_618103.1| - 8.1e-05 22.4 0.0 0.00011 22.0 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE ABC_transp_aux PF09822.4 gi|20092028|ref|NP_618103.1| - 0.0003 20.3 0.0 0.00036 20.0 0.0 1.0 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Thioredoxin_4 PF13462.1 gi|20092028|ref|NP_618103.1| - 0.00068 19.6 0.1 0.092 12.7 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_6 PF13848.1 gi|20092028|ref|NP_618103.1| - 0.00086 19.1 0.0 0.00086 19.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|20092028|ref|NP_618103.1| - 0.0017 18.0 0.1 0.045 13.4 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA family DSBA PF01323.15 gi|20092028|ref|NP_618103.1| - 0.0033 16.9 0.1 0.15 11.6 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain TrbC_Ftype PF09673.5 gi|20092028|ref|NP_618103.1| - 0.058 12.9 0.0 0.066 12.8 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Thioredoxin_5 PF13743.1 gi|20092028|ref|NP_618103.1| - 0.066 12.7 0.0 3.8 7.0 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin DUF953 PF06110.6 gi|20092028|ref|NP_618103.1| - 0.15 11.5 0.1 0.64 9.4 0.1 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) OrfB_Zn_ribbon PF07282.6 gi|20092029|ref|NP_618104.1| - 0.0013 18.3 0.2 0.0023 17.5 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Peptidase_M43 PF05572.8 gi|20092030|ref|NP_618105.1| - 2.5e-16 59.6 0.0 4.1e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.1 gi|20092030|ref|NP_618105.1| - 0.043 14.3 0.0 0.073 13.6 0.0 1.6 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Myb_DNA-bind_4 PF13837.1 gi|20092030|ref|NP_618105.1| - 0.053 13.6 0.0 0.17 11.9 0.0 1.9 1 1 0 1 1 1 0 Myb/SANT-like DNA-binding domain EF-hand_2 PF09068.6 gi|20092030|ref|NP_618105.1| - 0.094 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 EF hand Peptidase_M28 PF04389.12 gi|20092032|ref|NP_618107.1| - 4.1e-39 134.1 0.1 5.8e-39 133.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|20092032|ref|NP_618107.1| - 6.8e-07 28.9 0.2 1.2e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Nicastrin PF05450.10 gi|20092032|ref|NP_618107.1| - 0.0024 17.1 0.0 0.0048 16.1 0.0 1.5 1 0 0 1 1 1 1 Nicastrin Peptidase_M42 PF05343.9 gi|20092032|ref|NP_618107.1| - 0.056 12.2 0.0 2.4 6.8 0.0 2.1 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase Zeta_toxin PF06414.7 gi|20092032|ref|NP_618107.1| - 0.068 12.2 0.0 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Peptidase_C1 PF00112.18 gi|20092033|ref|NP_618108.1| - 3.5e-12 46.6 0.1 4e-11 43.2 0.0 2.0 1 1 0 1 1 1 1 Papain family cysteine protease Inhibitor_I42 PF09394.5 gi|20092034|ref|NP_618109.1| - 1.3e-21 76.7 0.0 3.1e-21 75.5 0.0 1.6 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 Exo_endo_phos PF03372.18 gi|20092035|ref|NP_618110.1| - 5.4e-13 49.4 0.0 6.9e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|20092035|ref|NP_618110.1| - 0.022 14.3 0.0 0.06 12.9 0.0 1.8 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase SRP14 PF02290.10 gi|20092036|ref|NP_618111.1| - 0.028 14.3 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 Signal recognition particle 14kD protein DDE_Tnp_IS1 PF03400.8 gi|20092037|ref|NP_618112.1| - 2.1e-13 50.4 0.3 2.4e-13 50.3 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20092038|ref|NP_618113.1| - 1.6e-06 27.5 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20092038|ref|NP_618113.1| - 7.8e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20092038|ref|NP_618113.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20092038|ref|NP_618113.1| - 0.00068 19.7 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20092038|ref|NP_618113.1| - 0.0057 16.1 0.1 0.022 14.3 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092038|ref|NP_618113.1| - 0.0063 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20092038|ref|NP_618113.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_Tnp_1 PF01527.15 gi|20092038|ref|NP_618113.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Transposase Zn_Tnp_IS1 PF03811.8 gi|20092038|ref|NP_618113.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain DUF2387 PF09526.5 gi|20092038|ref|NP_618113.1| - 0.053 13.4 0.7 0.095 12.6 0.5 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20092038|ref|NP_618113.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20092038|ref|NP_618113.1| - 0.081 12.8 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20092038|ref|NP_618113.1| - 0.13 12.1 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20092038|ref|NP_618113.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20092038|ref|NP_618113.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|20092038|ref|NP_618113.1| - 9.6 5.9 7.2 6.9 6.4 3.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain ATP_synt_I PF03899.10 gi|20092044|ref|NP_618119.1| - 2.1 8.5 6.1 2 8.6 0.8 2.1 1 1 1 2 2 2 0 ATP synthase I chain PKD PF00801.15 gi|20092045|ref|NP_618120.1| - 4.7e-33 112.7 57.8 4.9e-14 51.8 4.2 6.0 6 0 0 6 6 6 4 PKD domain CarboxypepD_reg PF13620.1 gi|20092045|ref|NP_618120.1| - 1.1e-10 41.3 0.2 1.1e-10 41.3 0.1 6.1 7 1 1 8 8 8 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|20092045|ref|NP_618120.1| - 3.5e-09 36.6 0.0 3.5e-09 36.6 0.0 4.6 5 0 0 5 5 5 1 Domain of unknown function (DUF4480) Renin_r PF07850.9 gi|20092046|ref|NP_618121.1| - 1.4 9.2 5.8 0.32 11.3 1.6 1.7 2 1 0 2 2 2 0 Renin receptor-like protein Keratin_B2 PF01500.12 gi|20092048|ref|NP_618123.1| - 0.46 10.2 2.8 0.82 9.4 1.9 1.3 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein DUF2370 PF10176.4 gi|20092050|ref|NP_618125.1| - 0.00083 18.7 0.1 0.001 18.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2370) ACT_6 PF13740.1 gi|20092051|ref|NP_618126.1| - 5.6e-18 64.4 0.2 6.3e-18 64.2 0.2 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|20092051|ref|NP_618126.1| - 6.1e-10 38.3 0.5 8.1e-10 37.9 0.3 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|20092051|ref|NP_618126.1| - 1.7e-05 25.0 0.9 2.8e-05 24.3 0.6 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|20092051|ref|NP_618126.1| - 0.0051 16.3 0.6 0.0071 15.8 0.4 1.3 1 0 0 1 1 1 1 ACT domain DUF2769 PF10967.3 gi|20092052|ref|NP_618127.1| - 3.7e-06 27.1 11.0 0.00082 19.6 1.7 3.0 2 1 1 3 3 3 2 Protein of unknown function (DUF2769) C1_2 PF03107.11 gi|20092052|ref|NP_618127.1| - 6.8 6.9 8.7 4.6 7.4 1.1 2.5 2 0 0 2 2 2 0 C1 domain SKI PF01202.17 gi|20092053|ref|NP_618128.1| - 6.9e-35 120.2 0.0 7.8e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|20092053|ref|NP_618128.1| - 2.8e-12 47.5 0.1 3.4e-12 47.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|20092053|ref|NP_618128.1| - 1.9e-08 34.4 0.8 3.4e-05 23.8 0.1 2.2 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.1 gi|20092053|ref|NP_618128.1| - 1.6e-07 31.6 0.1 2.9e-07 30.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|20092053|ref|NP_618128.1| - 2.4e-05 24.2 0.0 5e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|20092053|ref|NP_618128.1| - 0.0014 18.8 0.2 0.0022 18.2 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|20092053|ref|NP_618128.1| - 0.0033 17.1 0.8 0.0075 15.9 0.2 1.7 2 0 0 2 2 2 1 NTPase NB-ARC PF00931.17 gi|20092053|ref|NP_618128.1| - 0.0069 15.2 0.4 0.053 12.3 0.1 2.0 2 0 0 2 2 2 1 NB-ARC domain ABC_tran PF00005.22 gi|20092053|ref|NP_618128.1| - 0.0089 16.3 0.4 0.015 15.5 0.3 1.4 1 1 0 1 1 1 1 ABC transporter SRP54 PF00448.17 gi|20092053|ref|NP_618128.1| - 0.011 15.1 0.2 3.8 6.8 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_2 PF03668.10 gi|20092053|ref|NP_618128.1| - 0.028 13.5 0.4 0.073 12.1 0.2 1.7 1 1 0 1 1 1 0 P-loop ATPase protein family AAA_22 PF13401.1 gi|20092053|ref|NP_618128.1| - 0.032 14.3 0.1 0.062 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|20092053|ref|NP_618128.1| - 0.032 14.2 0.0 0.058 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain APS_kinase PF01583.15 gi|20092053|ref|NP_618128.1| - 0.034 13.7 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase CoaE PF01121.15 gi|20092053|ref|NP_618128.1| - 0.049 13.0 0.1 0.089 12.1 0.1 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_29 PF13555.1 gi|20092053|ref|NP_618128.1| - 0.051 13.1 0.1 0.09 12.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_2 PF07724.9 gi|20092053|ref|NP_618128.1| - 0.063 13.1 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) ADK PF00406.17 gi|20092053|ref|NP_618128.1| - 0.068 13.0 0.4 6.9 6.5 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase 6PF2K PF01591.13 gi|20092053|ref|NP_618128.1| - 0.11 11.5 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase Thymidylate_kin PF02223.12 gi|20092053|ref|NP_618128.1| - 0.12 11.7 0.1 0.3 10.4 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|20092053|ref|NP_618128.1| - 0.13 11.3 0.1 0.18 10.8 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.1 gi|20092053|ref|NP_618128.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|20092053|ref|NP_618128.1| - 0.18 11.7 0.4 0.41 10.6 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2769 PF10967.3 gi|20092054|ref|NP_618129.1| - 1.4e-15 57.2 15.7 2.4e-15 56.5 10.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) NS3_envE PF02723.9 gi|20092055|ref|NP_618130.1| - 1.1 9.2 14.5 0.089 12.7 2.0 2.2 1 1 1 2 2 2 0 Non-structural protein NS3/Small envelope protein E Trm56 PF01994.11 gi|20092057|ref|NP_618132.1| - 3.4e-50 168.8 0.1 4.1e-50 168.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 PYNP_C PF07831.8 gi|20092058|ref|NP_618133.1| - 5.8e-16 57.7 0.5 1.5e-15 56.3 0.1 2.0 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|20092058|ref|NP_618133.1| - 1.3e-14 53.4 0.0 3.3e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|20092058|ref|NP_618133.1| - 1.8e-13 50.4 0.1 1.6e-12 47.4 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|20092058|ref|NP_618133.1| - 0.00048 19.9 0.1 0.0024 17.6 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|20092058|ref|NP_618133.1| - 0.0058 16.5 0.0 0.021 14.7 0.0 1.9 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl PF00364.17 gi|20092058|ref|NP_618133.1| - 0.0091 15.6 0.4 0.15 11.7 0.1 3.1 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD_3 PF13437.1 gi|20092058|ref|NP_618133.1| - 0.027 14.7 0.2 0.42 10.9 0.0 2.9 3 0 0 3 3 3 0 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|20092058|ref|NP_618133.1| - 0.069 12.8 0.0 0.23 11.1 0.0 1.9 1 0 0 1 1 1 0 Biotin-lipoyl like MltA PF03562.12 gi|20092058|ref|NP_618133.1| - 0.17 11.6 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 MltA specific insert domain EamA PF00892.15 gi|20092059|ref|NP_618134.1| - 7.6e-43 145.5 37.2 8.9e-24 83.9 9.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|20092059|ref|NP_618134.1| - 0.00063 19.9 43.0 0.005 17.0 8.3 3.9 2 2 2 4 4 4 3 Multidrug resistance efflux transporter TPT PF03151.11 gi|20092059|ref|NP_618134.1| - 0.0058 16.2 22.3 0.17 11.5 6.0 2.5 2 0 0 2 2 2 2 Triose-phosphate Transporter family UAA PF08449.6 gi|20092059|ref|NP_618134.1| - 1.7 7.5 16.0 0.036 12.9 2.2 2.2 2 0 0 2 2 2 0 UAA transporter family DUF3481 PF11980.3 gi|20092061|ref|NP_618136.1| - 0.01 15.6 1.7 0.014 15.2 0.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3481) SUR7 PF06687.7 gi|20092061|ref|NP_618136.1| - 0.027 14.0 2.2 0.029 13.9 1.5 1.0 1 0 0 1 1 1 0 SUR7/PalI family DUF4396 PF14342.1 gi|20092061|ref|NP_618136.1| - 0.052 13.6 1.7 0.055 13.5 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) ABC2_membrane PF01061.19 gi|20092061|ref|NP_618136.1| - 0.096 11.8 7.1 0.1 11.7 4.9 1.0 1 0 0 1 1 1 0 ABC-2 type transporter E1-E2_ATPase PF00122.15 gi|20092061|ref|NP_618136.1| - 0.1 11.5 2.1 0.11 11.4 1.4 1.0 1 0 0 1 1 1 0 E1-E2 ATPase ABC2_membrane_3 PF12698.2 gi|20092061|ref|NP_618136.1| - 0.13 11.2 3.7 0.13 11.2 2.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.4 gi|20092061|ref|NP_618136.1| - 0.36 9.3 3.3 0.33 9.4 2.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NfeD PF01957.13 gi|20092061|ref|NP_618136.1| - 0.41 10.7 5.0 0.47 10.5 3.5 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding TctB PF07331.6 gi|20092061|ref|NP_618136.1| - 1.7 8.2 7.8 1.9 8.1 5.4 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family SdpI PF13630.1 gi|20092061|ref|NP_618136.1| - 1.9 8.2 7.0 2.5 7.8 4.8 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Pescadillo_N PF06732.6 gi|20092062|ref|NP_618137.1| - 0.09 12.0 0.1 0.1 11.8 0.0 1.0 1 0 0 1 1 1 0 Pescadillo N-terminus MacB_PCD PF12704.2 gi|20092063|ref|NP_618138.1| - 1e-30 107.0 0.7 1e-30 107.0 0.5 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20092063|ref|NP_618138.1| - 3.7e-16 58.9 13.7 3.7e-16 58.9 9.5 2.1 2 0 0 2 2 2 1 FtsX-like permease family FixH PF05751.6 gi|20092064|ref|NP_618139.1| - 0.23 11.2 0.9 1 9.1 0.0 2.6 3 0 0 3 3 3 0 FixH GATase_3 PF07685.9 gi|20092066|ref|NP_618141.1| - 3.4e-41 140.4 0.1 6e-41 139.6 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|20092066|ref|NP_618141.1| - 4.5e-26 91.4 0.0 8.5e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|20092066|ref|NP_618141.1| - 1.7e-18 66.9 0.0 4.2e-18 65.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|20092066|ref|NP_618141.1| - 1.9e-06 27.4 0.0 5.6e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|20092066|ref|NP_618141.1| - 0.0055 16.3 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 SNO glutamine amidotransferase family MobB PF03205.9 gi|20092066|ref|NP_618141.1| - 0.017 14.7 0.1 0.065 12.9 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TnpW PF14202.1 gi|20092067|ref|NP_618142.1| - 0.11 12.1 0.1 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Transposon-encoded protein TnpW OCD_Mu_crystall PF02423.10 gi|20092068|ref|NP_618143.1| - 2.3e-109 364.9 0.2 2.6e-109 364.8 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|20092068|ref|NP_618143.1| - 5.3e-08 33.0 0.0 9.9e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|20092068|ref|NP_618143.1| - 0.0078 16.6 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF434 PF04256.7 gi|20092069|ref|NP_618144.1| - 4.5e-20 70.7 0.0 8.4e-20 69.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF434) TPR_17 PF13431.1 gi|20092070|ref|NP_618145.1| - 1.2e-34 115.6 7.6 5.2e-05 23.1 0.0 7.7 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092070|ref|NP_618145.1| - 1.6e-31 107.7 24.1 2.5e-11 43.0 0.3 5.0 3 2 1 5 5 5 4 TPR repeat TPR_2 PF07719.12 gi|20092070|ref|NP_618145.1| - 5e-30 100.9 30.7 1.4e-05 24.6 0.1 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092070|ref|NP_618145.1| - 8.2e-28 96.4 23.3 1.9e-07 31.5 0.8 5.2 2 1 4 6 6 6 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092070|ref|NP_618145.1| - 7.6e-23 80.6 9.8 4.9e-07 29.9 0.1 5.5 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092070|ref|NP_618145.1| - 2.1e-21 74.4 16.7 0.003 18.0 0.1 8.0 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20092070|ref|NP_618145.1| - 2.6e-21 74.2 18.0 0.00027 20.4 0.1 7.5 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092070|ref|NP_618145.1| - 6.4e-18 64.4 32.8 1.3e-06 28.2 2.7 5.3 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092070|ref|NP_618145.1| - 1.2e-17 62.2 9.4 0.0037 16.9 0.0 7.1 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20092070|ref|NP_618145.1| - 3.8e-09 36.2 11.3 0.0021 17.8 0.1 4.5 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092070|ref|NP_618145.1| - 2.4e-08 33.1 16.4 0.068 13.0 0.1 6.3 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092070|ref|NP_618145.1| - 3.4e-07 30.2 9.1 5.6 7.6 0.0 6.9 8 0 0 8 8 7 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20092070|ref|NP_618145.1| - 4.1e-05 22.7 1.4 0.0014 17.7 0.0 3.0 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20092070|ref|NP_618145.1| - 0.00011 21.9 18.8 0.21 11.5 1.1 5.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|20092070|ref|NP_618145.1| - 0.00012 22.0 0.8 10 6.2 0.0 4.6 2 1 3 5 5 5 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092070|ref|NP_618145.1| - 0.00044 20.3 11.8 0.027 14.6 0.0 4.3 1 1 5 6 6 6 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|20092070|ref|NP_618145.1| - 0.023 13.4 0.8 2.1 7.0 0.0 3.0 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 TPR_21 PF09976.4 gi|20092070|ref|NP_618145.1| - 0.038 13.9 7.5 10 6.0 0.1 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat TPPII_N PF12583.3 gi|20092070|ref|NP_618145.1| - 2.7 8.1 4.9 17 5.5 0.0 3.7 3 1 2 5 5 5 0 Tripeptidyl peptidase II N terminal TPR_3 PF07720.7 gi|20092070|ref|NP_618145.1| - 4.7 7.1 15.9 9.6 6.1 0.8 5.6 7 0 0 7 7 7 0 Tetratricopeptide repeat Metallophos PF00149.23 gi|20092075|ref|NP_618150.1| - 4e-28 98.1 0.1 7.5e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|20092075|ref|NP_618150.1| - 1.1e-05 25.3 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Abi PF02517.11 gi|20092075|ref|NP_618150.1| - 0.12 12.5 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 CAAX protease self-immunity Pyr_redox_3 PF13738.1 gi|20092075|ref|NP_618150.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TPR_11 PF13414.1 gi|20092076|ref|NP_618151.1| - 4.9e-47 157.4 27.8 1.8e-15 56.3 0.5 5.6 2 2 1 5 5 5 4 TPR repeat TPR_17 PF13431.1 gi|20092076|ref|NP_618151.1| - 3e-42 139.3 18.3 7.3e-05 22.6 0.1 9.2 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092076|ref|NP_618151.1| - 1.9e-38 127.3 31.8 1.6e-06 27.5 0.8 9.5 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092076|ref|NP_618151.1| - 1.8e-34 117.6 52.6 1.7e-08 34.9 2.3 6.3 3 2 4 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092076|ref|NP_618151.1| - 2.8e-31 104.9 18.0 0.0011 18.5 0.1 9.7 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092076|ref|NP_618151.1| - 7.2e-31 103.8 21.0 0.00032 21.0 0.0 9.5 2 1 8 10 10 9 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092076|ref|NP_618151.1| - 1.7e-28 98.7 19.2 2e-07 31.2 0.6 5.9 4 2 2 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092076|ref|NP_618151.1| - 1e-27 95.8 24.9 2.2e-09 37.1 0.1 5.9 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20092076|ref|NP_618151.1| - 1.2e-26 91.1 26.2 2e-05 24.0 0.7 9.5 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092076|ref|NP_618151.1| - 6.2e-13 47.4 15.7 0.14 12.0 0.0 8.2 7 1 1 8 8 8 4 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20092076|ref|NP_618151.1| - 4.5e-12 45.1 3.6 3.7 8.2 0.1 7.8 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20092076|ref|NP_618151.1| - 2e-11 43.4 3.3 8.9e-05 21.6 0.0 3.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20092076|ref|NP_618151.1| - 2.1e-07 30.6 14.1 0.16 11.8 0.0 5.5 2 1 3 6 6 6 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20092076|ref|NP_618151.1| - 1.7e-05 24.5 27.0 1.7 8.6 0.0 7.5 7 0 0 7 7 7 2 Tetratricopeptide repeat DUF627 PF04781.7 gi|20092076|ref|NP_618151.1| - 0.00059 19.4 0.1 5.3 6.6 0.1 4.9 3 3 3 6 6 6 1 Protein of unknown function (DUF627) TPR_6 PF13174.1 gi|20092076|ref|NP_618151.1| - 0.00096 19.4 15.1 1.3 9.6 0.1 7.0 7 0 0 7 7 7 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|20092076|ref|NP_618151.1| - 0.0035 16.1 8.7 0.37 9.5 0.3 4.4 1 1 4 5 5 5 1 NMDA receptor-regulated protein 1 TPR_20 PF14561.1 gi|20092076|ref|NP_618151.1| - 0.0039 17.2 5.6 1.2 9.3 0.1 4.0 1 1 2 3 3 3 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092076|ref|NP_618151.1| - 0.011 15.8 16.3 0.17 12.0 0.1 4.8 2 1 3 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.12 gi|20092076|ref|NP_618151.1| - 0.026 14.8 15.5 3.5 7.9 0.0 4.6 2 2 3 5 5 5 0 Bacterial transcriptional activator domain TPR_21 PF09976.4 gi|20092076|ref|NP_618151.1| - 0.043 13.7 2.8 64 3.4 0.0 4.9 5 1 1 7 7 7 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|20092076|ref|NP_618151.1| - 0.05 12.8 0.9 0.64 9.3 0.0 3.2 4 0 0 4 4 4 0 SHNi-TPR TOM20_plant PF06552.7 gi|20092076|ref|NP_618151.1| - 0.06 12.9 0.3 11 5.5 0.0 3.4 3 2 0 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_3 PF07720.7 gi|20092076|ref|NP_618151.1| - 0.42 10.4 4.9 1.1 9.0 0.0 4.0 5 0 0 5 5 5 0 Tetratricopeptide repeat FxsA PF04186.8 gi|20092077|ref|NP_618152.1| - 1.3e-37 128.0 4.6 1.7e-37 127.7 3.2 1.0 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein LrgB PF04172.11 gi|20092078|ref|NP_618153.1| - 4.4e-81 271.1 12.8 5.1e-81 270.9 8.9 1.0 1 0 0 1 1 1 1 LrgB-like family DUF2953 PF11167.3 gi|20092078|ref|NP_618153.1| - 0.037 13.9 6.4 2.6 8.0 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) CbtA PF09490.5 gi|20092078|ref|NP_618153.1| - 0.041 13.1 0.7 0.1 11.8 0.5 1.7 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF3943 PF13084.1 gi|20092078|ref|NP_618153.1| - 0.15 11.6 0.3 8.8 5.9 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF3943) LrgA PF03788.9 gi|20092079|ref|NP_618154.1| - 8.7e-27 92.6 7.4 1.1e-26 92.3 5.1 1.1 1 0 0 1 1 1 1 LrgA family YfhO PF09586.5 gi|20092079|ref|NP_618154.1| - 0.089 10.8 0.4 0.1 10.6 0.3 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Aminotran_5 PF00266.14 gi|20092080|ref|NP_618155.1| - 3.4e-90 302.4 0.0 4.1e-90 302.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|20092080|ref|NP_618155.1| - 6e-08 32.1 0.0 8.8e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|20092080|ref|NP_618155.1| - 0.0001 21.4 0.0 0.0002 20.5 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.14 gi|20092080|ref|NP_618155.1| - 0.013 13.9 0.0 0.021 13.2 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.11 gi|20092081|ref|NP_618156.1| - 5.2e-45 152.4 0.0 5.7e-45 152.3 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Phos_pyr_kin PF08543.7 gi|20092081|ref|NP_618156.1| - 0.075 12.2 0.0 0.094 11.8 0.0 1.1 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Maf_N PF08383.6 gi|20092081|ref|NP_618156.1| - 0.14 11.7 1.2 0.28 10.7 0.8 1.5 1 0 0 1 1 1 0 Maf N-terminal region TIR-like PF10137.4 gi|20092082|ref|NP_618157.1| - 2e-22 79.1 0.0 1.3e-21 76.4 0.0 2.1 2 0 0 2 2 2 1 Predicted nucleotide-binding protein containing TIR-like domain Peripla_BP_4 PF13407.1 gi|20092082|ref|NP_618157.1| - 4.6e-12 45.8 0.0 7.5e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_3 PF13377.1 gi|20092082|ref|NP_618157.1| - 0.0024 17.8 0.0 0.0057 16.6 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein-like domain TIR_2 PF13676.1 gi|20092082|ref|NP_618157.1| - 0.0063 16.6 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 TIR domain Fer4_19 PF06902.6 gi|20092082|ref|NP_618157.1| - 0.016 14.9 0.0 0.36 10.6 0.0 2.4 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Beta-Casp PF10996.3 gi|20092082|ref|NP_618157.1| - 0.023 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Beta-Casp domain PfkB PF00294.19 gi|20092083|ref|NP_618158.1| - 1.2e-17 64.0 0.0 1.5e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase FAD_oxidored PF12831.2 gi|20092083|ref|NP_618158.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase RimK PF08443.6 gi|20092084|ref|NP_618159.1| - 3.3e-27 95.2 0.0 8.7e-26 90.5 0.0 2.4 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|20092084|ref|NP_618159.1| - 3.1e-15 55.7 0.0 7.5e-15 54.4 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|20092084|ref|NP_618159.1| - 1.1e-10 41.6 0.0 2.9e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20092084|ref|NP_618159.1| - 1.3e-08 33.9 0.0 2.3e-08 33.1 0.0 1.4 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|20092084|ref|NP_618159.1| - 6.4e-05 21.8 0.0 0.0019 17.0 0.0 2.2 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATP-grasp_3 PF02655.9 gi|20092084|ref|NP_618159.1| - 0.00025 20.9 0.0 0.00042 20.2 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|20092084|ref|NP_618159.1| - 0.029 13.5 0.1 0.17 11.0 0.1 2.0 1 1 1 2 2 2 0 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|20092084|ref|NP_618159.1| - 0.1 11.9 0.1 0.82 9.0 0.0 2.1 1 1 1 2 2 2 0 ATP-grasp domain PTH2 PF01981.11 gi|20092085|ref|NP_618160.1| - 9.1e-42 141.4 0.1 1e-41 141.2 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF4353 PF14262.1 gi|20092085|ref|NP_618160.1| - 0.021 14.0 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4353) Transglut_core PF01841.14 gi|20092086|ref|NP_618161.1| - 6.6e-06 26.3 0.0 1.3e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily TruD PF01142.13 gi|20092087|ref|NP_618162.1| - 2.9e-114 381.6 0.0 3.2e-114 381.5 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PMT_2 PF13231.1 gi|20092088|ref|NP_618163.1| - 0.075 12.9 11.0 0.11 12.3 7.6 1.3 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1772 PF08592.6 gi|20092088|ref|NP_618163.1| - 4.2 7.0 9.8 0.14 11.9 1.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) HEAT_2 PF13646.1 gi|20092090|ref|NP_618165.1| - 1.7e-38 130.7 10.8 1.9e-16 60.0 0.4 3.4 1 1 1 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|20092090|ref|NP_618165.1| - 2.5e-21 73.8 9.1 4.4e-05 23.5 0.2 6.7 7 0 0 7 7 6 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|20092090|ref|NP_618165.1| - 1.4e-15 55.8 0.4 0.0016 18.3 0.0 5.7 5 0 0 5 5 5 4 HEAT repeat Arm PF00514.18 gi|20092090|ref|NP_618165.1| - 1.9e-12 46.5 0.1 0.0043 16.8 0.0 5.6 4 1 2 6 6 5 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|20092090|ref|NP_618165.1| - 1.1e-11 44.8 10.0 0.0016 18.8 0.3 5.4 3 3 3 6 6 6 3 HEAT-like repeat Aconitase_B_N PF11791.3 gi|20092090|ref|NP_618165.1| - 1.8e-06 27.8 0.7 0.079 12.7 0.0 4.5 2 1 4 6 6 6 2 Aconitate B N-terminal domain Cnd1 PF12717.2 gi|20092090|ref|NP_618165.1| - 0.00027 20.8 0.0 2.5 7.9 0.0 4.1 2 2 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|20092090|ref|NP_618165.1| - 0.00034 19.0 0.0 1.1 7.5 0.0 2.9 2 1 1 3 3 3 2 Adaptin N terminal region Vac14_Fab1_bd PF12755.2 gi|20092090|ref|NP_618165.1| - 0.0014 18.9 0.0 3.6 8.0 0.0 3.5 2 2 2 4 4 4 2 Vacuolar 14 Fab1-binding region RIX1 PF08167.7 gi|20092090|ref|NP_618165.1| - 0.034 13.8 0.0 1.2 8.8 0.0 2.6 2 1 0 2 2 2 0 rRNA processing/ribosome biogenesis ERAP1_C PF11838.3 gi|20092090|ref|NP_618165.1| - 0.15 11.2 0.5 12 5.0 0.1 2.6 2 1 1 3 3 3 0 ERAP1-like C-terminal domain RNaseH_C PF09293.5 gi|20092092|ref|NP_618167.1| - 0.066 13.1 0.7 0.11 12.4 0.4 1.4 1 1 0 1 1 1 0 T4 RNase H, C terminal DUF4013 PF13197.1 gi|20092093|ref|NP_618168.1| - 9.1e-19 67.4 18.0 6.2e-18 64.7 12.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) DsbD_2 PF13386.1 gi|20092093|ref|NP_618168.1| - 0.0013 18.5 1.5 0.0013 18.5 1.1 1.7 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DUF1705 PF08019.7 gi|20092093|ref|NP_618168.1| - 1.7 8.1 11.7 0.17 11.3 1.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1705) CTP_synth_N PF06418.9 gi|20092094|ref|NP_618169.1| - 5.5e-128 425.8 0.9 7.5e-128 425.3 0.6 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|20092094|ref|NP_618169.1| - 7.7e-52 175.5 0.0 1.4e-51 174.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|20092094|ref|NP_618169.1| - 5.9e-09 35.6 0.0 4.3e-08 32.8 0.0 2.2 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|20092094|ref|NP_618169.1| - 2.3e-08 33.6 0.2 5.7e-08 32.4 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|20092094|ref|NP_618169.1| - 0.047 12.4 0.9 0.11 11.2 0.2 1.8 2 0 0 2 2 2 0 ArgK protein Trm112p PF03966.11 gi|20092096|ref|NP_618171.1| - 6.7e-13 48.7 0.5 1.1e-12 48.1 0.4 1.3 1 0 0 1 1 1 1 Trm112p-like protein Prim_Zn_Ribbon PF08273.7 gi|20092096|ref|NP_618171.1| - 0.0055 16.7 0.1 0.01 15.9 0.1 1.5 1 1 0 1 1 1 1 Zinc-binding domain of primase-helicase Elf1 PF05129.8 gi|20092096|ref|NP_618171.1| - 0.0099 15.5 0.0 0.0099 15.5 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.1 gi|20092096|ref|NP_618171.1| - 0.011 15.2 2.5 0.031 13.7 1.7 1.7 1 1 0 1 1 1 0 Cysteine-rich KTR Lar_restr_allev PF14354.1 gi|20092096|ref|NP_618171.1| - 0.015 15.6 1.3 0.031 14.5 0.9 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_4 PF14570.1 gi|20092096|ref|NP_618171.1| - 0.043 13.3 0.5 0.9 9.1 0.0 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain C1_4 PF07975.7 gi|20092096|ref|NP_618171.1| - 0.051 13.5 0.2 0.11 12.4 0.1 1.5 1 1 1 2 2 2 0 TFIIH C1-like domain CcmH PF03918.9 gi|20092096|ref|NP_618171.1| - 0.071 12.1 0.3 6.5 5.7 0.0 2.0 1 1 1 2 2 2 0 Cytochrome C biogenesis protein zf-TFIIB PF13453.1 gi|20092096|ref|NP_618171.1| - 0.073 12.2 0.6 4.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.15 gi|20092096|ref|NP_618171.1| - 0.099 12.5 0.7 12 5.8 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin DRP PF06044.7 gi|20092096|ref|NP_618171.1| - 0.1 11.6 0.1 0.11 11.4 0.1 1.0 1 0 0 1 1 1 0 Dam-replacing family NADH-G_4Fe-4S_3 PF10588.4 gi|20092096|ref|NP_618171.1| - 0.1 11.8 1.4 2.2 7.5 0.1 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CK_II_beta PF01214.13 gi|20092096|ref|NP_618171.1| - 0.11 11.9 0.3 0.12 11.8 0.2 1.1 1 0 0 1 1 1 0 Casein kinase II regulatory subunit zf-C3HC4_3 PF13920.1 gi|20092096|ref|NP_618171.1| - 0.14 11.8 2.4 1.8 8.2 1.7 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_UBOX PF13445.1 gi|20092096|ref|NP_618171.1| - 0.16 11.7 2.5 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 RING-type zinc-finger Prok-RING_1 PF14446.1 gi|20092096|ref|NP_618171.1| - 0.16 11.7 0.9 3 7.6 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|20092096|ref|NP_618171.1| - 0.19 11.2 0.9 0.74 9.3 0.1 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.7 gi|20092096|ref|NP_618171.1| - 0.19 11.5 2.2 2 8.2 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_4 PF14447.1 gi|20092096|ref|NP_618171.1| - 0.23 11.0 1.2 5.5 6.6 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF3797 PF12677.2 gi|20092096|ref|NP_618171.1| - 0.27 10.8 4.4 0.46 10.1 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) RNA_POL_M_15KD PF02150.11 gi|20092096|ref|NP_618171.1| - 0.35 10.5 2.7 1.1 9.0 2.0 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|20092096|ref|NP_618171.1| - 0.42 9.9 5.5 4.4 6.6 3.6 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-Di19 PF05605.7 gi|20092096|ref|NP_618171.1| - 0.44 10.7 4.1 13 6.0 0.2 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_5 PF14634.1 gi|20092096|ref|NP_618171.1| - 2.2 8.0 4.6 50 3.7 0.4 2.1 1 1 1 2 2 2 0 zinc-RING finger domain Rad50_zn_hook PF04423.9 gi|20092096|ref|NP_618171.1| - 5.4 6.5 7.7 6.1 6.4 0.7 2.3 1 1 1 2 2 2 0 Rad50 zinc hook motif Prismane PF03063.15 gi|20092097|ref|NP_618172.1| - 7.6e-180 598.6 2.7 8.7e-180 598.4 1.9 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Fer4_11 PF13247.1 gi|20092098|ref|NP_618173.1| - 4.6e-18 64.9 24.0 1e-10 41.3 6.4 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092098|ref|NP_618173.1| - 4.9e-09 36.4 36.7 0.00032 21.0 9.4 3.8 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092098|ref|NP_618173.1| - 7e-08 32.0 34.9 0.069 13.0 1.8 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20092098|ref|NP_618173.1| - 3.3e-07 30.4 31.6 0.0011 19.1 8.0 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092098|ref|NP_618173.1| - 7.1e-07 28.9 34.3 0.0032 17.2 9.0 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20092098|ref|NP_618173.1| - 4e-06 26.2 40.1 0.023 14.2 2.1 5.3 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20092098|ref|NP_618173.1| - 1.2e-05 25.2 26.3 0.0085 16.0 6.7 2.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20092098|ref|NP_618173.1| - 0.001 19.4 4.5 0.001 19.4 3.1 4.7 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092098|ref|NP_618173.1| - 0.0013 18.5 42.5 0.0025 17.6 1.9 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092098|ref|NP_618173.1| - 0.0016 18.2 31.1 0.06 13.1 0.7 3.5 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092098|ref|NP_618173.1| - 0.0087 16.7 32.0 2.4 8.9 0.1 4.6 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|20092098|ref|NP_618173.1| - 0.0099 16.2 27.4 0.63 10.4 0.3 3.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092098|ref|NP_618173.1| - 0.027 14.7 38.9 0.1 12.9 2.3 4.9 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|20092098|ref|NP_618173.1| - 6.5 6.4 26.4 2.5 7.7 2.7 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Usp PF00582.21 gi|20092099|ref|NP_618174.1| - 7.9e-37 126.5 0.8 9e-37 126.3 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|20092099|ref|NP_618174.1| - 0.0088 16.4 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain DDE_1 PF03184.14 gi|20092099|ref|NP_618174.1| - 0.16 11.0 0.0 3 6.9 0.0 2.1 1 1 0 2 2 2 0 DDE superfamily endonuclease FR47 PF08445.5 gi|20092099|ref|NP_618174.1| - 0.22 11.3 1.2 23 4.8 0.2 2.5 3 0 0 3 3 3 0 FR47-like protein Gate PF07670.9 gi|20092100|ref|NP_618175.1| - 3.4e-11 43.0 20.1 9.3e-08 31.9 2.7 2.9 2 2 0 2 2 2 2 Nucleoside recognition Usp PF00582.21 gi|20092101|ref|NP_618176.1| - 6.7e-37 126.7 0.7 7.5e-37 126.6 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family PP2 PF14299.1 gi|20092101|ref|NP_618176.1| - 0.013 14.8 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Phloem protein 2 PmbA_TldD PF01523.11 gi|20092102|ref|NP_618177.1| - 1.6e-62 211.4 0.8 2.8e-62 210.6 0.6 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|20092103|ref|NP_618178.1| - 1.5e-71 241.0 0.6 2.1e-71 240.6 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.8 gi|20092104|ref|NP_618179.1| - 1.6e-32 112.4 4.9 2.7e-32 111.7 3.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|20092104|ref|NP_618179.1| - 4.7e-28 98.1 0.0 2e-19 69.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|20092104|ref|NP_618179.1| - 2.8e-16 59.2 0.2 1.4e-09 37.4 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|20092104|ref|NP_618179.1| - 6.7e-15 54.9 0.0 9.5e-09 34.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|20092104|ref|NP_618179.1| - 3.8e-11 42.5 0.5 8.3e-11 41.4 0.3 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|20092104|ref|NP_618179.1| - 1.2e-10 41.2 0.0 0.00017 21.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|20092104|ref|NP_618179.1| - 1.3e-07 30.7 0.2 0.084 11.6 0.0 3.6 3 0 0 3 3 3 2 MCM2/3/5 family AAA PF00004.24 gi|20092104|ref|NP_618179.1| - 1.7e-07 31.4 0.1 0.003 17.7 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|20092104|ref|NP_618179.1| - 2.3e-05 24.5 0.0 0.0066 16.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|20092104|ref|NP_618179.1| - 5.3e-05 23.5 0.0 0.00016 22.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|20092104|ref|NP_618179.1| - 0.00014 21.8 0.0 0.91 9.5 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|20092104|ref|NP_618179.1| - 0.00023 20.8 0.0 0.00065 19.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_3 PF07726.6 gi|20092104|ref|NP_618179.1| - 0.00031 20.3 0.0 1 8.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|20092104|ref|NP_618179.1| - 0.00043 20.3 0.3 0.02 14.8 0.0 2.9 3 0 0 3 3 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|20092104|ref|NP_618179.1| - 0.00082 18.4 0.0 0.14 11.1 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus T2SE PF00437.15 gi|20092104|ref|NP_618179.1| - 0.0014 17.5 0.0 0.011 14.6 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.11 gi|20092104|ref|NP_618179.1| - 0.0033 16.6 0.0 0.0089 15.2 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein Parvo_NS1 PF01057.12 gi|20092104|ref|NP_618179.1| - 0.0041 16.0 0.0 0.0075 15.1 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_17 PF13207.1 gi|20092104|ref|NP_618179.1| - 0.0061 17.3 0.0 0.027 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|20092104|ref|NP_618179.1| - 0.0068 16.0 0.0 0.017 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|20092104|ref|NP_618179.1| - 0.02 14.7 0.0 0.061 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|20092104|ref|NP_618179.1| - 0.026 13.9 0.0 0.083 12.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|20092104|ref|NP_618179.1| - 0.026 13.1 0.0 0.049 12.2 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|20092104|ref|NP_618179.1| - 0.043 12.7 0.0 0.081 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|20092104|ref|NP_618179.1| - 0.058 13.3 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain TPR_12 PF13424.1 gi|20092105|ref|NP_618180.1| - 3.8e-26 90.8 17.1 1.4e-08 34.5 0.4 3.9 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092105|ref|NP_618180.1| - 2.8e-14 52.5 7.6 1.4e-07 31.0 0.2 4.2 1 1 3 4 4 4 3 TPR repeat TPR_1 PF00515.23 gi|20092105|ref|NP_618180.1| - 7.5e-14 50.6 7.1 0.00023 20.6 0.1 5.7 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092105|ref|NP_618180.1| - 1.1e-13 49.9 8.2 0.00036 20.2 0.2 5.9 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092105|ref|NP_618180.1| - 4.2e-12 45.5 1.1 0.22 12.2 0.0 6.3 1 1 4 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092105|ref|NP_618180.1| - 5.7e-10 39.6 3.7 0.0012 19.4 0.4 4.7 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092105|ref|NP_618180.1| - 9e-10 38.3 4.0 1.8 9.1 0.1 6.2 5 1 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20092105|ref|NP_618180.1| - 1.1e-09 37.8 0.2 0.032 14.1 0.0 4.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092105|ref|NP_618180.1| - 6.9e-09 34.8 10.4 0.38 10.6 0.2 5.7 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092105|ref|NP_618180.1| - 2.8e-08 33.9 11.2 0.29 11.4 0.3 5.2 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092105|ref|NP_618180.1| - 4.3e-07 29.2 5.8 0.18 11.6 0.1 5.7 5 1 1 6 6 6 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092105|ref|NP_618180.1| - 1.5e-05 25.0 8.8 0.36 10.9 0.5 5.0 2 2 3 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|20092105|ref|NP_618180.1| - 3.7e-05 22.6 9.9 0.13 10.9 0.3 3.3 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 SPO22 PF08631.5 gi|20092105|ref|NP_618180.1| - 0.00013 21.1 3.9 0.008 15.2 0.1 2.4 2 0 0 2 2 2 2 Meiosis protein SPO22/ZIP4 like PTS_IIA PF02255.11 gi|20092105|ref|NP_618180.1| - 0.00035 20.3 7.6 0.87 9.5 0.5 3.9 4 1 1 5 5 4 2 PTS system, Lactose/Cellobiose specific IIA subunit TPR_21 PF09976.4 gi|20092105|ref|NP_618180.1| - 0.00038 20.4 9.7 0.006 16.5 1.1 3.6 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092105|ref|NP_618180.1| - 0.00068 19.6 9.9 0.56 10.5 0.0 6.2 7 1 0 7 7 5 1 Tetratricopeptide repeat Arfaptin PF06456.8 gi|20092105|ref|NP_618180.1| - 0.003 16.9 2.1 0.012 14.9 0.6 2.1 2 0 0 2 2 2 1 Arfaptin-like domain SNAP PF14938.1 gi|20092105|ref|NP_618180.1| - 0.0083 15.3 6.0 1.5 7.8 0.0 3.6 1 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP YfdX PF10938.3 gi|20092105|ref|NP_618180.1| - 0.02 14.5 1.0 0.02 14.5 0.7 3.3 3 1 1 4 4 3 0 YfdX protein TOM20_plant PF06552.7 gi|20092105|ref|NP_618180.1| - 0.024 14.2 2.4 39 3.7 0.0 3.9 1 1 0 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 DUF4398 PF14346.1 gi|20092105|ref|NP_618180.1| - 0.032 14.2 7.3 3.4 7.7 0.5 3.5 4 0 0 4 4 3 0 Domain of unknown function (DUF4398) TPR_9 PF13371.1 gi|20092105|ref|NP_618180.1| - 0.075 12.8 0.1 7.2 6.5 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat Cytochrom_B562 PF07361.6 gi|20092105|ref|NP_618180.1| - 0.099 13.0 6.5 0.46 10.9 0.2 3.0 3 0 0 3 3 3 0 Cytochrome b562 Apc5 PF12862.2 gi|20092105|ref|NP_618180.1| - 0.11 12.3 2.4 5.5 6.9 0.0 3.4 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 HAT PF02184.11 gi|20092105|ref|NP_618180.1| - 0.17 11.6 1.1 1.9 8.2 0.0 2.8 2 1 0 2 2 2 0 HAT (Half-A-TPR) repeat Phe_tRNA-synt_N PF02912.13 gi|20092105|ref|NP_618180.1| - 0.18 11.5 7.3 0.37 10.5 1.5 2.6 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain TPR_5 PF12688.2 gi|20092105|ref|NP_618180.1| - 0.21 11.6 2.6 0.65 10.0 0.1 2.9 2 2 1 3 3 3 0 Tetratrico peptide repeat PPR PF01535.15 gi|20092105|ref|NP_618180.1| - 0.27 11.2 1.6 33 4.7 0.0 4.3 5 0 0 5 5 4 0 PPR repeat MIT PF04212.13 gi|20092105|ref|NP_618180.1| - 0.34 10.8 12.6 6.5 6.7 0.0 4.6 3 1 2 5 5 5 0 MIT (microtubule interacting and transport) domain DUF2564 PF10819.3 gi|20092105|ref|NP_618180.1| - 0.61 10.2 5.4 1.9 8.6 0.3 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF2564) SHNi-TPR PF10516.4 gi|20092105|ref|NP_618180.1| - 0.8 8.9 4.2 31 3.9 0.0 3.4 3 0 0 3 3 3 0 SHNi-TPR Fis1_TPR_C PF14853.1 gi|20092105|ref|NP_618180.1| - 3.4 7.6 16.4 6.4 6.7 0.1 5.2 6 1 0 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat DUF2262 PF10020.4 gi|20092105|ref|NP_618180.1| - 3.5 7.8 7.7 27 4.9 3.0 3.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2262) DUF1673 PF07895.6 gi|20092106|ref|NP_618181.1| - 4.5e-06 26.3 0.1 6.3e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF2178 PF09946.4 gi|20092106|ref|NP_618181.1| - 0.0055 16.4 3.1 0.011 15.4 0.1 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) DUF4191 PF13829.1 gi|20092106|ref|NP_618181.1| - 0.053 12.6 5.7 0.67 9.0 1.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) YlaC PF10777.4 gi|20092106|ref|NP_618181.1| - 0.06 12.8 7.5 0.22 11.0 0.0 2.1 2 0 0 2 2 2 0 Inner membrane protein YlaC DUF3099 PF11298.3 gi|20092106|ref|NP_618181.1| - 0.15 11.8 3.3 3 7.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) DUF3784 PF12650.2 gi|20092106|ref|NP_618181.1| - 0.19 11.6 5.0 1.8 8.5 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Gemini_mov PF01708.11 gi|20092106|ref|NP_618181.1| - 0.4 10.2 0.0 0.4 10.2 0.0 2.4 2 1 1 3 3 2 0 Geminivirus putative movement protein COPI_assoc PF08507.5 gi|20092106|ref|NP_618181.1| - 0.73 9.5 7.1 3 7.5 1.8 2.3 2 0 0 2 2 2 0 COPI associated protein SPC12 PF06645.8 gi|20092106|ref|NP_618181.1| - 1 9.2 9.5 3.4 7.5 1.2 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF4131 PF13567.1 gi|20092106|ref|NP_618181.1| - 1.6 8.1 6.0 4.3 6.7 4.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3753 PF12575.3 gi|20092106|ref|NP_618181.1| - 2.1 8.1 0.0 2.1 8.1 0.0 2.8 2 1 0 2 2 1 0 Protein of unknown function (DUF3753) DUF3329 PF11808.3 gi|20092106|ref|NP_618181.1| - 3.1 7.9 13.8 0.23 11.5 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3329) DUF3040 PF11239.3 gi|20092106|ref|NP_618181.1| - 3.8 7.6 8.5 12 6.0 3.7 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF2207 PF09972.4 gi|20092106|ref|NP_618181.1| - 4.3 5.8 5.4 57 2.0 3.8 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3923 PF13061.1 gi|20092106|ref|NP_618181.1| - 7.7 6.4 12.6 1.8 8.4 1.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3923) Glyco_trans_2_3 PF13632.1 gi|20092106|ref|NP_618181.1| - 8.9 5.9 7.8 0.28 10.8 0.2 1.8 1 1 1 2 2 2 0 Glycosyl transferase family group 2 TPR_12 PF13424.1 gi|20092107|ref|NP_618182.1| - 5.1e-24 84.0 8.2 3.4e-15 55.7 0.3 5.2 2 2 1 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20092107|ref|NP_618182.1| - 5.2e-22 76.4 10.8 2.7e-06 26.7 0.4 6.4 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092107|ref|NP_618182.1| - 1.1e-18 65.5 12.8 3.5e-05 23.3 0.2 6.6 6 1 1 7 7 6 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092107|ref|NP_618182.1| - 1.5e-18 66.2 11.1 1.7e-11 43.6 1.2 3.7 1 1 1 3 3 3 3 TPR repeat TPR_10 PF13374.1 gi|20092107|ref|NP_618182.1| - 2.2e-18 65.5 3.5 4.3e-07 29.6 0.0 5.5 6 1 1 7 7 6 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092107|ref|NP_618182.1| - 4e-16 57.4 15.6 1.5e-05 24.4 0.4 6.4 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092107|ref|NP_618182.1| - 7.3e-12 44.1 4.9 0.0014 18.2 0.0 5.4 5 2 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092107|ref|NP_618182.1| - 3.1e-10 39.7 0.2 0.17 12.6 0.0 6.0 5 2 2 7 7 6 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092107|ref|NP_618182.1| - 1.6e-07 31.3 5.4 0.65 10.5 0.0 6.6 5 2 0 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092107|ref|NP_618182.1| - 2.6e-07 31.1 0.5 0.0011 19.5 0.0 4.4 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092107|ref|NP_618182.1| - 9.5e-06 25.4 8.7 0.071 13.3 0.0 4.9 5 0 0 5 5 3 2 Tetratricopeptide repeat DUF2225 PF09986.4 gi|20092107|ref|NP_618182.1| - 7.5e-05 22.2 0.4 7.5e-05 22.2 0.3 2.4 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_19 PF14559.1 gi|20092107|ref|NP_618182.1| - 9.2e-05 22.7 7.3 0.12 12.7 0.6 4.7 2 2 1 3 3 3 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|20092107|ref|NP_618182.1| - 9.9e-05 22.0 3.5 0.045 13.3 0.0 4.2 1 1 2 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.4 gi|20092107|ref|NP_618182.1| - 0.00019 21.3 0.1 4.4 7.2 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_3 PF07720.7 gi|20092107|ref|NP_618182.1| - 0.001 18.8 2.3 0.54 10.1 0.2 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20092107|ref|NP_618182.1| - 0.0018 18.0 0.0 0.5 10.2 0.0 3.7 3 1 1 4 4 4 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|20092107|ref|NP_618182.1| - 0.011 15.4 2.8 8.3 6.3 0.0 4.0 3 2 1 4 4 4 0 Anaphase-promoting complex subunit 5 MIT PF04212.13 gi|20092107|ref|NP_618182.1| - 0.025 14.4 12.4 6.1 6.8 0.5 4.7 5 0 0 5 5 5 0 MIT (microtubule interacting and transport) domain ATP-synt_D PF01813.12 gi|20092107|ref|NP_618182.1| - 0.049 13.1 0.7 0.049 13.1 0.5 2.8 2 2 1 3 3 3 0 ATP synthase subunit D Ribosomal_S7 PF00177.16 gi|20092107|ref|NP_618182.1| - 0.079 12.5 0.4 0.8 9.2 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S7p/S5e TPR_15 PF13429.1 gi|20092107|ref|NP_618182.1| - 0.081 11.9 2.7 1 8.3 0.1 2.6 2 2 0 2 2 2 0 Tetratricopeptide repeat Arfaptin PF06456.8 gi|20092107|ref|NP_618182.1| - 0.083 12.2 3.0 0.57 9.4 0.2 2.4 2 0 0 2 2 2 0 Arfaptin-like domain RPN7 PF10602.4 gi|20092107|ref|NP_618182.1| - 0.1 12.0 1.2 9.4 5.5 0.6 3.2 2 2 2 4 4 4 0 26S proteasome subunit RPN7 ATP-synt_DE PF00401.15 gi|20092107|ref|NP_618182.1| - 4.5 7.2 15.9 3.2 7.7 3.7 3.2 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TPR_10 PF13374.1 gi|20092108|ref|NP_618183.1| - 1.6e-137 444.1 28.5 6.5e-11 41.7 0.0 13.6 14 0 0 14 14 13 13 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092108|ref|NP_618183.1| - 2.2e-135 440.8 59.7 2.1e-16 59.5 0.8 10.5 3 2 9 12 12 12 12 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092108|ref|NP_618183.1| - 2.2e-64 208.2 65.3 0.00012 21.7 0.1 18.9 14 11 2 16 16 16 15 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092108|ref|NP_618183.1| - 2.2e-62 201.9 52.1 0.00035 20.1 0.0 18.2 14 8 0 14 14 13 12 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20092108|ref|NP_618183.1| - 3.1e-61 200.6 82.1 2.1e-05 23.9 0.2 21.2 15 8 8 23 23 23 20 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092108|ref|NP_618183.1| - 1.9e-58 189.5 7.3 0.0099 16.4 0.0 15.1 13 2 2 15 15 14 12 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092108|ref|NP_618183.1| - 1.9e-57 190.7 62.0 1.4e-08 34.2 2.5 12.9 2 1 11 13 13 13 13 TPR repeat TPR_8 PF13181.1 gi|20092108|ref|NP_618183.1| - 1.7e-53 174.4 63.1 0.0011 18.5 0.1 17.1 15 2 1 16 16 15 12 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092108|ref|NP_618183.1| - 3.5e-46 151.5 66.4 5.5e-05 23.0 0.8 18.2 18 7 0 18 18 14 11 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092108|ref|NP_618183.1| - 5.7e-43 144.7 20.5 0.0016 19.0 0.1 14.4 3 1 11 14 14 14 10 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092108|ref|NP_618183.1| - 1.1e-38 129.0 32.7 0.049 14.1 0.0 13.9 14 0 0 14 14 13 12 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092108|ref|NP_618183.1| - 1.3e-35 121.5 57.7 3e-05 24.2 1.3 14.2 2 2 11 13 13 13 12 Tetratricopeptide repeat TPR_21 PF09976.4 gi|20092108|ref|NP_618183.1| - 5.6e-24 84.7 10.2 1.5 8.7 0.0 13.8 14 0 0 14 14 14 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092108|ref|NP_618183.1| - 3.9e-20 71.7 36.1 0.81 9.8 1.1 13.1 11 3 2 13 13 13 7 Anaphase-promoting complex, cyclosome, subunit 3 TOM20_plant PF06552.7 gi|20092108|ref|NP_618183.1| - 4.5e-20 72.0 27.0 0.21 11.1 0.1 12.6 2 2 6 11 11 11 8 Plant specific mitochondrial import receptor subunit TOM20 Phage_C PF12025.3 gi|20092108|ref|NP_618183.1| - 1.4e-18 66.6 16.3 9.2 6.3 0.0 12.3 12 0 0 12 12 12 0 Phage protein C Fis1_TPR_C PF14853.1 gi|20092108|ref|NP_618183.1| - 3.5e-18 65.2 59.1 1 9.3 0.2 12.8 12 0 0 12 12 12 12 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|20092108|ref|NP_618183.1| - 2.2e-16 59.4 58.6 0.27 11.1 0.3 14.0 5 3 7 14 14 14 8 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|20092108|ref|NP_618183.1| - 3.2e-15 55.8 62.5 0.0086 14.8 1.8 12.5 1 1 11 13 13 13 10 NMDA receptor-regulated protein 1 TPR_9 PF13371.1 gi|20092108|ref|NP_618183.1| - 6.3e-09 35.5 10.1 9.4 6.1 0.1 10.8 6 3 7 13 13 13 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|20092108|ref|NP_618183.1| - 2.6e-08 32.9 50.0 9 5.6 0.1 14.0 15 0 0 15 15 15 0 SHNi-TPR Alkyl_sulf_dimr PF14863.1 gi|20092108|ref|NP_618183.1| - 1.2e-07 32.0 22.6 2.6 8.2 0.1 10.7 1 1 10 11 11 11 1 Alkyl sulfatase dimerisation DUF2225 PF09986.4 gi|20092108|ref|NP_618183.1| - 1.3e-07 31.2 30.0 0.062 12.7 2.4 6.5 1 1 6 7 7 7 6 Uncharacterized protein conserved in bacteria (DUF2225) DUF3856 PF12968.2 gi|20092108|ref|NP_618183.1| - 7.3e-07 29.0 19.8 0.0046 16.7 0.5 7.5 2 1 4 9 9 9 4 Domain of Unknown Function (DUF3856) DUF3366 PF11846.3 gi|20092108|ref|NP_618183.1| - 1.6e-06 28.0 0.1 9 6.1 0.1 6.8 1 1 5 6 6 6 0 Domain of unknown function (DUF3366) YfdX PF10938.3 gi|20092108|ref|NP_618183.1| - 0.023 14.3 24.5 5.2 6.7 0.2 7.8 6 2 0 8 8 8 0 YfdX protein DUF1282 PF06930.7 gi|20092108|ref|NP_618183.1| - 0.044 13.4 0.0 4.5e+02 0.3 0.0 6.2 10 0 0 10 10 8 0 Protein of unknown function (DUF1282) DUF3543 PF12063.3 gi|20092108|ref|NP_618183.1| - 0.1 11.8 27.8 6.1 5.9 0.5 9.2 2 2 2 7 7 7 0 Domain of unknown function (DUF3543) PPR PF01535.15 gi|20092108|ref|NP_618183.1| - 0.21 11.6 47.1 40 4.4 0.0 14.7 12 7 3 15 15 15 0 PPR repeat PTS_IIA PF02255.11 gi|20092108|ref|NP_618183.1| - 4.3 7.2 22.1 9.6 6.1 0.7 8.9 11 2 2 13 13 12 0 PTS system, Lactose/Cellobiose specific IIA subunit SseC PF04888.7 gi|20092108|ref|NP_618183.1| - 7.7 5.7 6.2 2.7 7.2 1.7 2.2 2 0 0 2 2 1 0 Secretion system effector C (SseC) like family CN_hydrolase PF00795.17 gi|20092109|ref|NP_618184.1| - 1.2e-05 24.7 0.0 0.00012 21.4 0.0 2.5 2 1 0 2 2 2 1 Carbon-nitrogen hydrolase DUF2082 PF09855.4 gi|20092110|ref|NP_618185.1| - 2.5e-31 107.3 1.9 2.9e-31 107.1 1.3 1.1 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L37e PF01907.14 gi|20092110|ref|NP_618185.1| - 0.00011 21.9 0.7 0.4 10.5 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L37e Zn_Tnp_IS1595 PF12760.2 gi|20092110|ref|NP_618185.1| - 0.00018 21.2 2.4 0.014 15.1 2.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|20092110|ref|NP_618185.1| - 0.0015 18.0 0.9 0.013 15.0 0.1 2.1 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO Mcm10 PF09332.6 gi|20092110|ref|NP_618185.1| - 0.0022 17.4 1.3 0.0047 16.3 0.2 1.8 2 0 0 2 2 2 1 Mcm10 replication factor Elf1 PF05129.8 gi|20092110|ref|NP_618185.1| - 0.0059 16.2 1.1 0.0089 15.7 0.8 1.3 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like Tnp_zf-ribbon_2 PF13842.1 gi|20092110|ref|NP_618185.1| - 0.0089 16.4 5.2 0.33 11.3 0.1 2.1 2 0 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon DUF2296 PF10058.4 gi|20092110|ref|NP_618185.1| - 0.009 15.7 0.5 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) zf-DNA_Pol PF08996.5 gi|20092110|ref|NP_618185.1| - 0.014 14.7 0.5 0.017 14.4 0.3 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger CpXC PF14353.1 gi|20092110|ref|NP_618185.1| - 0.017 15.0 0.4 3.6 7.5 0.1 2.0 2 0 0 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|20092110|ref|NP_618185.1| - 0.023 14.0 0.6 0.35 10.2 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-3CxxC PF13695.1 gi|20092110|ref|NP_618185.1| - 0.026 14.7 0.1 0.03 14.5 0.1 1.1 1 0 0 1 1 1 0 Zinc-binding domain TFIIS_C PF01096.13 gi|20092110|ref|NP_618185.1| - 0.027 14.1 2.6 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|20092110|ref|NP_618185.1| - 0.029 14.2 0.2 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20092110|ref|NP_618185.1| - 0.036 13.7 0.4 3.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF3797 PF12677.2 gi|20092110|ref|NP_618185.1| - 0.066 12.8 3.5 0.52 9.9 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) IBR PF01485.16 gi|20092110|ref|NP_618185.1| - 0.081 12.8 2.2 0.2 11.5 1.5 1.6 1 1 0 1 1 1 0 IBR domain zf-C4_Topoisom PF01396.14 gi|20092110|ref|NP_618185.1| - 0.095 12.2 2.3 1.9 8.0 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|20092110|ref|NP_618185.1| - 0.11 11.7 2.6 0.84 8.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|20092110|ref|NP_618185.1| - 0.13 12.4 1.5 0.13 12.4 1.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ribosomal_S27e PF01667.12 gi|20092110|ref|NP_618185.1| - 0.13 11.7 1.2 10 5.7 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 zf-Mss51 PF13824.1 gi|20092110|ref|NP_618185.1| - 0.14 12.0 0.4 0.58 10.0 0.0 1.9 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 PhnA_Zn_Ribbon PF08274.7 gi|20092110|ref|NP_618185.1| - 0.2 11.4 1.1 0.29 10.9 0.1 1.7 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.1 gi|20092110|ref|NP_618185.1| - 0.22 11.8 2.8 3.5 8.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-AN1 PF01428.11 gi|20092110|ref|NP_618185.1| - 0.25 11.2 5.1 5.6 6.9 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_2 PF13240.1 gi|20092110|ref|NP_618185.1| - 0.3 10.6 2.9 0.37 10.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|20092110|ref|NP_618185.1| - 0.4 10.5 2.5 1.8 8.4 1.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|20092110|ref|NP_618185.1| - 0.41 10.2 2.7 11 5.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|20092110|ref|NP_618185.1| - 0.58 9.9 5.8 6.5 6.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.1 gi|20092110|ref|NP_618185.1| - 0.94 9.2 4.0 12 5.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PALP PF00291.20 gi|20092112|ref|NP_618187.1| - 1.7e-28 99.7 0.0 2.3e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.16 gi|20092113|ref|NP_618188.1| - 6.6e-16 58.2 0.0 1.7e-15 56.9 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|20092113|ref|NP_618188.1| - 9.7e-10 38.1 0.0 1.8e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF39 PF01837.11 gi|20092114|ref|NP_618189.1| - 9.1e-110 366.4 0.0 1e-109 366.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|20092114|ref|NP_618189.1| - 0.00012 22.4 13.6 0.00024 21.4 9.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20092114|ref|NP_618189.1| - 0.0003 20.2 18.0 0.0017 17.8 0.5 3.1 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20092114|ref|NP_618189.1| - 0.00068 19.3 13.9 0.0013 18.4 9.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092114|ref|NP_618189.1| - 0.0016 18.6 14.2 0.0031 17.7 9.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20092114|ref|NP_618189.1| - 0.0019 18.0 15.0 0.19 11.7 4.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20092114|ref|NP_618189.1| - 0.021 14.6 15.4 0.024 14.5 5.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20092114|ref|NP_618189.1| - 0.15 12.8 13.5 2.4 8.9 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20092114|ref|NP_618189.1| - 0.23 11.8 16.2 0.87 10.0 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092114|ref|NP_618189.1| - 0.39 10.6 14.4 0.31 10.9 0.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092114|ref|NP_618189.1| - 2.6 8.1 14.4 3.5 7.7 9.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20092114|ref|NP_618189.1| - 9.3 6.6 15.3 1.8e+02 2.5 4.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain ThiS PF02597.15 gi|20092115|ref|NP_618190.1| - 7.6e-05 23.0 0.3 9.8e-05 22.7 0.2 1.2 1 0 0 1 1 1 1 ThiS family HTH_34 PF13601.1 gi|20092117|ref|NP_618192.1| - 0.0038 17.2 0.0 0.0079 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DSPc PF00782.15 gi|20092117|ref|NP_618192.1| - 0.018 14.6 0.7 0.1 12.1 0.1 2.0 1 1 1 2 2 2 0 Dual specificity phosphatase, catalytic domain TrmB PF01978.14 gi|20092117|ref|NP_618192.1| - 0.036 13.7 1.0 0.051 13.2 0.0 1.8 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Zn_dep_PLPC PF00882.13 gi|20092118|ref|NP_618193.1| - 0.075 12.6 0.1 0.077 12.6 0.1 1.1 1 0 0 1 1 1 0 Zinc dependent phospholipase C Cytochrom_C_asm PF01578.15 gi|20092119|ref|NP_618194.1| - 9.8e-28 97.1 24.0 9.8e-28 97.1 16.6 3.1 1 1 2 3 3 3 2 Cytochrome C assembly protein ResB PF05140.9 gi|20092120|ref|NP_618195.1| - 3.7e-08 32.3 1.2 6.5e-05 21.6 0.2 2.2 2 0 0 2 2 2 2 ResB-like family DUF46 PF01864.12 gi|20092121|ref|NP_618196.1| - 1.7e-47 161.5 1.5 2e-47 161.3 1.0 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|20092121|ref|NP_618196.1| - 1.4e-08 34.7 3.7 1.4e-08 34.7 2.6 1.8 1 1 1 2 2 2 1 Cytidylyltransferase family Pribosyltran PF00156.22 gi|20092122|ref|NP_618197.1| - 2.6e-11 43.3 2.4 2.6e-11 43.3 1.7 2.0 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|20092122|ref|NP_618197.1| - 0.044 12.9 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase GARS_A PF01071.14 gi|20092124|ref|NP_618199.1| - 6.2e-55 185.7 0.0 1.5e-54 184.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|20092124|ref|NP_618199.1| - 6e-31 106.8 0.4 1.3e-30 105.8 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|20092124|ref|NP_618199.1| - 5.8e-22 77.6 0.4 2.3e-21 75.7 0.3 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|20092124|ref|NP_618199.1| - 3.3e-14 53.0 0.0 9.3e-14 51.5 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20092124|ref|NP_618199.1| - 7.4e-06 24.9 0.0 2.4e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|20092124|ref|NP_618199.1| - 0.0042 16.9 0.0 0.008 16.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain QRPTase_N PF02749.11 gi|20092124|ref|NP_618199.1| - 0.022 14.5 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain GFO_IDH_MocA PF01408.17 gi|20092124|ref|NP_618199.1| - 0.039 14.4 0.0 0.16 12.4 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_D2 PF02786.12 gi|20092124|ref|NP_618199.1| - 0.087 12.0 0.0 0.21 10.8 0.0 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain GSH-S_ATP PF02955.11 gi|20092124|ref|NP_618199.1| - 0.11 11.6 0.0 0.24 10.5 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain OTCace PF00185.19 gi|20092125|ref|NP_618200.1| - 2.2e-56 190.0 0.0 3.2e-56 189.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|20092125|ref|NP_618200.1| - 1.7e-50 170.3 0.1 2.7e-50 169.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF4468 PF14730.1 gi|20092125|ref|NP_618200.1| - 0.047 13.3 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold HTH_23 PF13384.1 gi|20092126|ref|NP_618201.1| - 1.6e-06 27.6 0.0 3e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20092126|ref|NP_618201.1| - 8.2e-06 25.2 0.0 1.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20092126|ref|NP_618201.1| - 1.1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20092126|ref|NP_618201.1| - 0.00066 19.8 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20092126|ref|NP_618201.1| - 0.0043 16.5 0.0 0.022 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092126|ref|NP_618201.1| - 0.0059 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2387 PF09526.5 gi|20092126|ref|NP_618201.1| - 0.017 15.0 0.7 0.031 14.2 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.1 gi|20092126|ref|NP_618201.1| - 0.017 14.9 3.6 0.036 13.9 2.5 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_Tnp_1 PF01527.15 gi|20092126|ref|NP_618201.1| - 0.02 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase PolC_DP2 PF03833.8 gi|20092126|ref|NP_618201.1| - 0.076 10.6 0.1 0.072 10.7 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.5 gi|20092126|ref|NP_618201.1| - 0.094 12.6 2.5 1.6 8.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20092126|ref|NP_618201.1| - 0.15 11.8 7.6 0.24 11.2 5.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|20092126|ref|NP_618201.1| - 0.18 11.5 2.7 0.38 10.5 1.3 1.8 2 0 0 2 2 2 0 zinc-ribbons Rubredoxin PF00301.15 gi|20092126|ref|NP_618201.1| - 0.21 11.5 2.2 1.2 9.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20092126|ref|NP_618201.1| - 0.44 9.6 5.6 1.5 7.9 3.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1 PF03811.8 gi|20092126|ref|NP_618201.1| - 0.66 9.5 9.5 1.1 8.7 6.6 1.4 1 0 0 1 1 1 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|20092126|ref|NP_618201.1| - 8.4 6.1 7.6 11 5.7 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|20092126|ref|NP_618201.1| - 8.8 6.0 6.8 13 5.5 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DDE_Tnp_IS1 PF03400.8 gi|20092127|ref|NP_618202.1| - 1.1e-12 48.1 0.5 1.2e-12 48.0 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase DDE_Tnp_1_6 PF13751.1 gi|20092128|ref|NP_618203.1| - 4.1e-23 81.7 10.2 1.6e-18 66.9 0.2 3.0 3 0 0 3 3 3 2 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092128|ref|NP_618203.1| - 2.3e-18 66.5 1.1 1.4e-17 64.0 0.8 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20092128|ref|NP_618203.1| - 4.9e-17 61.6 0.1 1.5e-16 60.0 0.0 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|20092128|ref|NP_618203.1| - 0.0051 16.9 0.1 0.16 12.1 0.0 2.9 2 0 0 2 2 2 1 Transposase DDE domain AhpC-TSA PF00578.16 gi|20092128|ref|NP_618203.1| - 0.024 14.2 0.4 0.062 12.9 0.3 1.6 1 0 0 1 1 1 0 AhpC/TSA family DUF1508 PF07411.7 gi|20092130|ref|NP_618205.1| - 1.6e-23 81.8 0.1 1.9e-23 81.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) CarboxypepD_reg PF13620.1 gi|20092130|ref|NP_618205.1| - 0.032 14.2 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Radical_SAM PF04055.16 gi|20092131|ref|NP_618206.1| - 1.1e-17 64.7 0.0 2.6e-17 63.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|20092131|ref|NP_618206.1| - 8.8e-07 29.1 0.8 8.8e-07 29.1 0.5 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|20092131|ref|NP_618206.1| - 1.1e-05 25.4 0.0 2.2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20092131|ref|NP_618206.1| - 8e-05 22.7 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain KIF1B PF12423.3 gi|20092133|ref|NP_618208.1| - 0.076 13.0 0.1 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Kinesin protein 1B Med8 PF10232.4 gi|20092134|ref|NP_618209.1| - 0.07 12.6 0.0 0.07 12.6 0.0 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 TM2 PF05154.11 gi|20092135|ref|NP_618210.1| - 1.8e-10 40.8 6.8 2.8e-10 40.2 4.7 1.4 1 1 0 1 1 1 1 TM2 domain DUF4328 PF14219.1 gi|20092135|ref|NP_618210.1| - 0.12 11.6 0.6 1.2 8.3 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4328) DUF788 PF05620.6 gi|20092135|ref|NP_618210.1| - 0.2 11.5 1.6 0.23 11.2 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF788) DUF4234 PF14018.1 gi|20092135|ref|NP_618210.1| - 0.4 10.4 4.9 1.8 8.3 3.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) Tenui_PVC2 PF06656.6 gi|20092135|ref|NP_618210.1| - 0.87 7.2 3.2 0.98 7.1 2.2 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein GerA PF03323.8 gi|20092135|ref|NP_618210.1| - 1.7 6.7 3.7 2 6.4 2.5 1.0 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Flavin_Reduct PF01613.13 gi|20092136|ref|NP_618211.1| - 1.7e-20 73.4 0.0 2.2e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|20092136|ref|NP_618211.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF447) UvrB PF12344.3 gi|20092137|ref|NP_618212.1| - 6.1e-23 80.0 1.2 6.1e-23 80.0 0.8 2.1 2 0 0 2 2 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|20092137|ref|NP_618212.1| - 7.4e-15 54.5 0.1 1.6e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|20092137|ref|NP_618212.1| - 3e-14 53.2 1.4 2.4e-12 47.0 0.0 3.3 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|20092137|ref|NP_618212.1| - 1.7e-08 33.6 3.6 1.7e-08 33.6 2.5 2.6 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.24 gi|20092137|ref|NP_618212.1| - 2.4e-06 27.1 0.0 0.00016 21.1 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|20092137|ref|NP_618212.1| - 0.0013 18.4 0.0 0.019 14.6 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|20092137|ref|NP_618212.1| - 0.0035 16.9 0.2 0.15 11.6 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092137|ref|NP_618212.1| - 0.0059 16.7 0.1 2.1 8.5 0.0 3.9 3 2 1 4 4 4 1 AAA domain DUF87 PF01935.12 gi|20092137|ref|NP_618212.1| - 0.013 15.2 0.8 0.1 12.4 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 Zot PF05707.7 gi|20092137|ref|NP_618212.1| - 0.026 13.9 0.0 2 7.8 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA PF00004.24 gi|20092137|ref|NP_618212.1| - 0.044 13.9 1.7 3 8.0 0.0 3.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Kinesin PF00225.18 gi|20092137|ref|NP_618212.1| - 0.045 12.4 0.0 0.075 11.7 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain Arch_ATPase PF01637.13 gi|20092137|ref|NP_618212.1| - 0.045 13.4 4.0 0.23 11.1 0.0 3.2 3 0 0 3 3 3 0 Archaeal ATPase Flavi_DEAD PF07652.9 gi|20092137|ref|NP_618212.1| - 0.059 13.1 0.2 0.42 10.3 0.1 2.5 3 0 0 3 3 3 0 Flavivirus DEAD domain UB2H PF14814.1 gi|20092137|ref|NP_618212.1| - 0.064 12.9 0.0 0.26 11.0 0.0 2.1 2 1 0 2 2 1 0 Bifunctional transglycosylase second domain Ribonuc_red_lgN PF00317.16 gi|20092137|ref|NP_618212.1| - 0.1 12.3 0.3 0.73 9.6 0.0 2.6 3 1 0 3 3 3 0 Ribonucleotide reductase, all-alpha domain TrwB_AAD_bind PF10412.4 gi|20092137|ref|NP_618212.1| - 0.11 11.1 0.3 2.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|20092137|ref|NP_618212.1| - 0.11 12.4 0.0 1.6 8.6 0.0 2.6 2 0 0 2 2 2 0 AAA ATPase domain UvrC_HhH_N PF08459.6 gi|20092138|ref|NP_618213.1| - 1.6e-56 190.1 0.2 3.5e-56 189.0 0.0 1.7 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|20092138|ref|NP_618213.1| - 2.2e-10 40.7 0.0 1.5e-09 38.0 0.0 2.5 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.14 gi|20092138|ref|NP_618213.1| - 2.3e-08 33.2 4.6 6.8e-08 31.7 3.2 1.9 1 0 0 1 1 1 1 UvrB/uvrC motif PYC_OADA PF02436.13 gi|20092138|ref|NP_618213.1| - 0.018 14.5 0.4 0.03 13.7 0.3 1.3 1 0 0 1 1 1 0 Conserved carboxylase domain ABC_tran PF00005.22 gi|20092139|ref|NP_618214.1| - 1.7e-20 73.6 1.0 1.1e-08 35.5 0.1 4.5 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|20092139|ref|NP_618214.1| - 1.2e-11 44.3 0.0 0.0079 15.4 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092139|ref|NP_618214.1| - 9.2e-09 34.7 0.2 0.0066 15.9 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|20092139|ref|NP_618214.1| - 6.9e-07 29.5 10.2 0.13 12.1 0.0 4.6 5 0 0 5 5 4 2 AAA domain AAA_14 PF13173.1 gi|20092139|ref|NP_618214.1| - 9.7e-07 28.7 0.0 0.19 11.6 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|20092139|ref|NP_618214.1| - 1.6e-06 28.2 0.2 0.15 12.0 0.0 3.9 4 0 0 4 4 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|20092139|ref|NP_618214.1| - 3e-06 27.3 1.2 0.19 11.8 0.0 4.3 4 0 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|20092139|ref|NP_618214.1| - 8.4e-06 25.3 0.0 0.13 11.6 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|20092139|ref|NP_618214.1| - 9.1e-06 26.0 0.1 0.075 13.3 0.0 3.3 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|20092139|ref|NP_618214.1| - 2.3e-05 24.8 8.0 0.035 14.4 0.5 3.4 3 1 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|20092139|ref|NP_618214.1| - 3.9e-05 23.6 8.1 0.0072 16.3 0.4 3.8 3 1 0 3 3 3 1 DnaJ central domain Viral_helicase1 PF01443.13 gi|20092139|ref|NP_618214.1| - 4.1e-05 23.2 0.0 0.064 12.7 0.0 2.6 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase DUF258 PF03193.11 gi|20092139|ref|NP_618214.1| - 5.2e-05 22.4 0.1 0.24 10.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|20092139|ref|NP_618214.1| - 6.3e-05 22.8 0.0 0.38 10.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.4 gi|20092139|ref|NP_618214.1| - 0.00016 20.7 0.1 0.24 10.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) BCA_ABC_TP_C PF12399.3 gi|20092139|ref|NP_618214.1| - 0.00026 20.5 6.7 0.02 14.5 0.4 2.7 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_19 PF13245.1 gi|20092139|ref|NP_618214.1| - 0.00027 20.6 0.4 1.4 8.6 0.1 3.3 2 0 0 2 2 2 2 Part of AAA domain KaiC PF06745.8 gi|20092139|ref|NP_618214.1| - 0.00038 19.6 0.1 0.26 10.3 0.0 2.7 2 0 0 2 2 2 1 KaiC cobW PF02492.14 gi|20092139|ref|NP_618214.1| - 0.00038 19.9 0.2 0.085 12.3 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|20092139|ref|NP_618214.1| - 0.00041 20.1 1.0 1.3 8.6 0.0 3.4 3 0 0 3 3 3 2 Archaeal ATPase AAA_15 PF13175.1 gi|20092139|ref|NP_618214.1| - 0.00057 19.0 1.5 0.33 9.9 0.0 3.7 3 1 0 4 4 4 1 AAA ATPase domain T2SE PF00437.15 gi|20092139|ref|NP_618214.1| - 0.00084 18.3 0.1 1 8.2 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_10 PF12846.2 gi|20092139|ref|NP_618214.1| - 0.00085 18.8 0.9 1.6 8.1 0.2 3.2 2 1 1 3 3 3 2 AAA-like domain APS_kinase PF01583.15 gi|20092139|ref|NP_618214.1| - 0.00087 18.9 0.1 1 9.0 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase RNA_helicase PF00910.17 gi|20092139|ref|NP_618214.1| - 0.0015 18.6 0.0 0.38 10.9 0.0 2.8 2 0 0 2 2 2 1 RNA helicase PRK PF00485.13 gi|20092139|ref|NP_618214.1| - 0.0029 17.2 0.2 1.1 8.7 0.0 2.6 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|20092139|ref|NP_618214.1| - 0.003 17.2 0.0 2.2 7.9 0.0 2.5 2 0 0 2 2 2 1 NACHT domain Miro PF08477.8 gi|20092139|ref|NP_618214.1| - 0.0031 17.9 0.8 5.6 7.4 0.0 4.0 4 0 0 4 4 3 0 Miro-like protein MobB PF03205.9 gi|20092139|ref|NP_618214.1| - 0.0042 16.8 0.2 1.5 8.5 0.0 2.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|20092139|ref|NP_618214.1| - 0.0061 15.3 0.5 4.5 5.9 0.0 3.0 3 0 0 3 3 3 0 ArgK protein MMR_HSR1 PF01926.18 gi|20092139|ref|NP_618214.1| - 0.0067 16.3 0.2 1.3 8.9 0.0 3.3 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|20092139|ref|NP_618214.1| - 0.0079 17.0 14.3 0.097 13.4 0.7 4.6 5 1 0 5 5 3 1 AAA domain AAA_30 PF13604.1 gi|20092139|ref|NP_618214.1| - 0.016 14.7 0.1 4.2 6.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain RNA12 PF10443.4 gi|20092139|ref|NP_618214.1| - 0.035 12.6 0.0 1 7.8 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein AAA_28 PF13521.1 gi|20092139|ref|NP_618214.1| - 0.035 14.0 0.0 4.5 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|20092139|ref|NP_618214.1| - 0.05 13.3 2.8 7.2 6.2 0.0 3.0 3 0 0 3 3 2 0 NTPase DAP3 PF10236.4 gi|20092139|ref|NP_618214.1| - 0.053 12.4 0.1 6.2 5.6 0.1 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Lar_restr_allev PF14354.1 gi|20092139|ref|NP_618214.1| - 0.057 13.7 4.7 10 6.5 0.1 3.5 3 0 0 3 3 3 0 Restriction alleviation protein Lar MutS_V PF00488.16 gi|20092139|ref|NP_618214.1| - 0.11 11.8 0.0 14 5.0 0.0 2.4 2 0 0 2 2 2 0 MutS domain V Zn-ribbon_8 PF09723.5 gi|20092139|ref|NP_618214.1| - 4.1 7.4 10.3 2.4 8.1 0.3 3.6 3 0 0 3 3 3 0 Zinc ribbon domain rve PF00665.21 gi|20092140|ref|NP_618215.1| - 2.4e-20 72.8 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20092140|ref|NP_618215.1| - 2e-05 24.0 0.0 5.1e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20092140|ref|NP_618215.1| - 0.00094 18.6 0.1 0.0023 17.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20092140|ref|NP_618215.1| - 0.0017 17.8 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20092140|ref|NP_618215.1| - 0.0049 16.4 0.3 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20092140|ref|NP_618215.1| - 0.0059 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|20092140|ref|NP_618215.1| - 0.013 15.0 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 HTH domain MerR_1 PF13411.1 gi|20092140|ref|NP_618215.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_5 PF01022.15 gi|20092140|ref|NP_618215.1| - 0.022 14.4 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|20092140|ref|NP_618215.1| - 0.028 13.9 0.0 0.075 12.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|20092140|ref|NP_618215.1| - 0.03 14.4 0.1 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix DUF2312 PF10073.4 gi|20092140|ref|NP_618215.1| - 0.043 13.1 0.0 2.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_28 PF13518.1 gi|20092140|ref|NP_618215.1| - 0.044 13.8 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|20092140|ref|NP_618215.1| - 0.046 13.5 0.2 0.9 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF746 PF05344.6 gi|20092140|ref|NP_618215.1| - 0.057 12.9 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_24 PF13412.1 gi|20092140|ref|NP_618215.1| - 0.083 12.2 0.8 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|20092140|ref|NP_618215.1| - 0.087 12.6 0.2 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix IstB_IS21 PF01695.12 gi|20092141|ref|NP_618216.1| - 3.9e-68 228.3 0.0 6e-68 227.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20092141|ref|NP_618216.1| - 6.3e-05 23.1 0.1 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20092141|ref|NP_618216.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|20092141|ref|NP_618216.1| - 0.00021 21.2 0.2 0.0028 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20092141|ref|NP_618216.1| - 0.00031 20.0 0.0 0.00046 19.4 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_17 PF13207.1 gi|20092141|ref|NP_618216.1| - 0.00056 20.7 1.6 0.0032 18.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20092141|ref|NP_618216.1| - 0.0011 18.3 0.1 0.0031 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|20092141|ref|NP_618216.1| - 0.0017 18.4 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|20092141|ref|NP_618216.1| - 0.0038 17.3 0.1 0.87 9.7 0.0 2.9 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20092141|ref|NP_618216.1| - 0.0069 15.4 0.1 0.011 14.8 0.0 1.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|20092141|ref|NP_618216.1| - 0.012 14.8 0.0 0.096 11.8 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|20092141|ref|NP_618216.1| - 0.018 14.9 0.5 0.061 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|20092141|ref|NP_618216.1| - 0.034 13.3 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20092141|ref|NP_618216.1| - 0.055 13.4 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20092141|ref|NP_618216.1| - 0.061 13.2 0.1 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20092141|ref|NP_618216.1| - 0.063 13.2 0.2 0.24 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|20092141|ref|NP_618216.1| - 0.072 12.5 3.1 0.19 11.1 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_19 PF13245.1 gi|20092141|ref|NP_618216.1| - 0.079 12.7 0.1 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|20092141|ref|NP_618216.1| - 0.12 11.1 0.0 0.24 10.1 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|20092141|ref|NP_618216.1| - 0.2 11.9 2.2 0.25 11.6 0.1 2.2 2 2 0 2 2 2 0 AAA domain Pentapeptide PF00805.17 gi|20092142|ref|NP_618217.1| - 4.1e-112 364.2 74.5 8.2e-16 56.8 2.6 8.0 1 1 7 10 10 10 10 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|20092142|ref|NP_618217.1| - 1.5e-34 117.6 0.0 9.9e-12 44.5 0.0 4.2 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|20092142|ref|NP_618217.1| - 2.3e-30 104.1 0.0 1.1e-05 25.1 0.0 6.6 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) OprD PF03573.8 gi|20092142|ref|NP_618217.1| - 0.019 13.7 8.4 1.2 7.8 0.3 3.1 1 1 0 3 3 3 0 outer membrane porin, OprD family DDE_Tnp_1 PF01609.16 gi|20092143|ref|NP_618218.1| - 2.3e-09 37.1 2.7 3.5e-09 36.5 1.9 1.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|20092143|ref|NP_618218.1| - 0.0026 16.8 0.3 0.0032 16.5 0.2 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 tRNA-synt_1d PF00750.14 gi|20092143|ref|NP_618218.1| - 0.059 12.1 0.0 0.07 11.9 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (R) Endonuclease_NS PF01223.18 gi|20092144|ref|NP_618219.1| - 2.3e-47 161.3 0.1 3.2e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease Trypsin_2 PF13365.1 gi|20092144|ref|NP_618219.1| - 1.9e-15 56.9 0.0 3.3e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Peptidase_S7 PF00949.16 gi|20092144|ref|NP_618219.1| - 0.0019 17.6 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase S7, Flavivirus NS3 serine protease Trypsin PF00089.21 gi|20092144|ref|NP_618219.1| - 0.0028 17.2 0.0 0.048 13.2 0.0 2.2 1 1 0 1 1 1 1 Trypsin Endonuclea_NS_2 PF13930.1 gi|20092144|ref|NP_618219.1| - 0.096 12.7 0.0 0.29 11.1 0.0 1.8 1 0 0 1 1 1 0 DNA/RNA non-specific endonuclease Peptidase_S39 PF02122.10 gi|20092144|ref|NP_618219.1| - 0.1 11.8 0.0 0.32 10.2 0.0 1.7 2 0 0 2 2 2 0 Peptidase S39 DUF3160 PF11369.3 gi|20092146|ref|NP_618221.1| - 3e-298 990.5 1.2 3.4e-298 990.3 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) Acid_phosphat_B PF03767.9 gi|20092146|ref|NP_618221.1| - 0.052 12.9 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) zf-ZPR1 PF03367.8 gi|20092146|ref|NP_618221.1| - 0.095 11.8 0.1 0.18 10.9 0.1 1.4 1 0 0 1 1 1 0 ZPR1 zinc-finger domain DUF3160 PF11369.3 gi|20092148|ref|NP_618223.1| - 6.9e-277 919.9 2.1 8.3e-277 919.6 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) Pep_M12B_propep PF01562.14 gi|20092149|ref|NP_618224.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Reprolysin family propeptide DUF4286 PF14114.1 gi|20092150|ref|NP_618225.1| - 0.04 14.1 0.2 0.076 13.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4286) DUF4277 PF14104.1 gi|20092152|ref|NP_618227.1| - 5.8e-45 152.1 0.0 1.2e-44 151.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20092152|ref|NP_618227.1| - 2.8e-14 53.1 2.9 1.8e-13 50.5 2.0 2.1 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.6 gi|20092152|ref|NP_618227.1| - 0.025 14.8 2.1 0.93 9.8 0.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1410) DDE_Tnp_ISL3 PF01610.12 gi|20092154|ref|NP_618229.1| - 1.8e-05 24.4 0.0 1.8e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Transposase HMGL-like PF00682.14 gi|20092156|ref|NP_618231.1| - 2.1e-72 243.5 1.5 3.4e-72 242.9 1.0 1.3 1 0 0 1 1 1 1 HMGL-like adh_short PF00106.20 gi|20092156|ref|NP_618231.1| - 0.014 15.3 1.9 0.18 11.7 0.2 2.9 3 0 0 3 3 3 0 short chain dehydrogenase Lipase_GDSL_2 PF13472.1 gi|20092156|ref|NP_618231.1| - 0.14 12.2 0.0 0.41 10.7 0.0 1.8 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family NAD_kinase PF01513.16 gi|20092157|ref|NP_618232.1| - 1.4e-61 207.8 0.5 1.6e-61 207.5 0.3 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|20092157|ref|NP_618232.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.20 gi|20092158|ref|NP_618233.1| - 9.4e-37 126.7 0.0 1.1e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|20092158|ref|NP_618233.1| - 2e-07 30.1 0.1 7.4e-06 25.0 0.0 2.4 2 1 0 2 2 2 1 Fructose-1-6-bisphosphatase FBPase_glpX PF03320.8 gi|20092158|ref|NP_618233.1| - 0.049 12.2 0.0 0.071 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Gp_dh_C PF02800.15 gi|20092159|ref|NP_618234.1| - 1.1e-26 93.1 0.0 1.6e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|20092159|ref|NP_618234.1| - 4.6e-20 72.1 0.1 1.7e-19 70.2 0.1 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|20092159|ref|NP_618234.1| - 1.4e-11 44.3 0.1 3.2e-11 43.2 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|20092159|ref|NP_618234.1| - 4.5e-05 22.6 0.1 0.0091 15.1 0.1 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|20092159|ref|NP_618234.1| - 0.00063 20.2 0.1 0.0022 18.5 0.1 1.9 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|20092159|ref|NP_618234.1| - 0.00082 19.7 0.0 0.002 18.5 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|20092159|ref|NP_618234.1| - 0.0017 18.6 0.1 0.0035 17.6 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|20092159|ref|NP_618234.1| - 0.0026 16.8 0.0 0.0041 16.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|20092159|ref|NP_618234.1| - 0.0082 16.1 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|20092159|ref|NP_618234.1| - 0.021 14.6 0.9 0.071 12.9 0.2 2.2 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|20092159|ref|NP_618234.1| - 0.025 14.9 0.7 0.11 12.9 0.5 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|20092159|ref|NP_618234.1| - 0.11 11.9 1.0 3.5 6.9 0.3 2.7 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain PAS_3 PF08447.6 gi|20092160|ref|NP_618235.1| - 3.1e-36 123.3 3.1 1.5e-18 66.6 0.0 3.9 4 0 0 4 4 4 2 PAS fold HisKA_2 PF07568.7 gi|20092160|ref|NP_618235.1| - 9.6e-32 108.6 0.4 2.7e-31 107.2 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|20092160|ref|NP_618235.1| - 6.1e-26 90.8 0.7 1.2e-07 32.0 0.0 4.7 4 1 0 4 4 4 3 PAS domain PAS PF00989.19 gi|20092160|ref|NP_618235.1| - 4.3e-17 61.9 0.1 0.00029 20.6 0.0 4.8 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|20092160|ref|NP_618235.1| - 2.2e-12 46.9 0.1 2.4e-08 33.9 0.0 3.8 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|20092160|ref|NP_618235.1| - 7.6e-12 44.9 0.1 1.6e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|20092160|ref|NP_618235.1| - 7.3e-06 25.7 0.0 1.8e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20092160|ref|NP_618235.1| - 0.0084 16.5 0.4 0.022 15.1 0.3 1.8 1 1 0 1 1 1 1 HWE histidine kinase DUF2710 PF10921.3 gi|20092160|ref|NP_618235.1| - 0.035 14.2 0.0 0.095 12.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) Methyltransf_18 PF12847.2 gi|20092161|ref|NP_618236.1| - 7.6e-13 49.0 0.0 1.3e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092161|ref|NP_618236.1| - 4.8e-10 39.2 0.0 7.3e-10 38.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20092161|ref|NP_618236.1| - 2.8e-08 33.1 0.0 5.4e-08 32.1 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|20092161|ref|NP_618236.1| - 1.5e-07 30.7 0.1 3.5e-07 29.5 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_11 PF08241.7 gi|20092161|ref|NP_618236.1| - 1.1e-06 28.9 0.0 2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092161|ref|NP_618236.1| - 9e-06 25.9 0.0 1.5e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092161|ref|NP_618236.1| - 1e-05 25.9 0.0 1.9e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092161|ref|NP_618236.1| - 1.5e-05 24.4 0.0 2.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|20092161|ref|NP_618236.1| - 3.4e-05 23.3 0.0 0.0031 16.9 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PCMT PF01135.14 gi|20092161|ref|NP_618236.1| - 6.9e-05 22.4 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.6 gi|20092161|ref|NP_618236.1| - 8.3e-05 21.4 0.0 0.00012 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_26 PF13659.1 gi|20092161|ref|NP_618236.1| - 0.00013 21.9 0.0 0.00019 21.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092161|ref|NP_618236.1| - 0.00026 20.2 0.0 0.00038 19.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|20092161|ref|NP_618236.1| - 0.00079 18.3 0.0 0.0011 17.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|20092161|ref|NP_618236.1| - 0.003 17.0 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_23 PF13489.1 gi|20092161|ref|NP_618236.1| - 0.0073 16.0 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|20092161|ref|NP_618236.1| - 0.013 14.5 0.0 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.11 gi|20092161|ref|NP_618236.1| - 0.022 14.3 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein CMAS PF02353.15 gi|20092161|ref|NP_618236.1| - 0.027 13.5 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|20092161|ref|NP_618236.1| - 0.033 13.7 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_PK PF05891.7 gi|20092161|ref|NP_618236.1| - 0.092 12.0 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase PrmA PF06325.8 gi|20092161|ref|NP_618236.1| - 0.13 11.3 0.1 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) SpoIIIAH PF12685.2 gi|20092163|ref|NP_618238.1| - 0.014 14.9 0.1 0.019 14.4 0.0 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein PcrB PF01884.12 gi|20092164|ref|NP_618239.1| - 0.02 14.1 0.6 0.034 13.3 0.0 1.6 2 0 0 2 2 2 0 PcrB family Endonuc-HincII PF09226.6 gi|20092164|ref|NP_618239.1| - 0.048 13.0 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease HincII DUF1628 PF07790.6 gi|20092164|ref|NP_618239.1| - 0.42 11.3 7.5 0.55 11.0 4.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) DUF772 PF05598.6 gi|20092166|ref|NP_618241.1| - 1.4e-17 63.3 0.0 2.1e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) IstB_IS21 PF01695.12 gi|20092167|ref|NP_618242.1| - 6e-69 231.0 0.0 8.9e-69 230.4 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20092167|ref|NP_618242.1| - 6.7e-05 23.0 0.1 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|20092167|ref|NP_618242.1| - 0.00013 21.2 0.0 0.00021 20.5 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein Bac_DnaA PF00308.13 gi|20092167|ref|NP_618242.1| - 0.00017 21.3 0.0 0.00034 20.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|20092167|ref|NP_618242.1| - 0.00052 20.0 0.1 0.0028 17.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20092167|ref|NP_618242.1| - 0.00073 20.3 1.2 0.0032 18.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|20092167|ref|NP_618242.1| - 0.00077 18.9 0.0 0.0016 17.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|20092167|ref|NP_618242.1| - 0.0017 18.5 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|20092167|ref|NP_618242.1| - 0.0035 17.4 0.1 0.62 10.2 0.0 2.7 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20092167|ref|NP_618242.1| - 0.0076 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|20092167|ref|NP_618242.1| - 0.011 15.6 0.5 0.037 13.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|20092167|ref|NP_618242.1| - 0.016 14.2 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|20092167|ref|NP_618242.1| - 0.024 13.8 0.0 0.096 11.8 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|20092167|ref|NP_618242.1| - 0.031 14.2 0.0 0.072 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|20092167|ref|NP_618242.1| - 0.045 13.1 2.8 0.1 11.9 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain MMR_HSR1 PF01926.18 gi|20092167|ref|NP_618242.1| - 0.054 13.4 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|20092167|ref|NP_618242.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|20092167|ref|NP_618242.1| - 0.068 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|20092167|ref|NP_618242.1| - 0.082 11.6 0.0 0.16 10.7 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_24 PF13479.1 gi|20092167|ref|NP_618242.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20092167|ref|NP_618242.1| - 0.21 11.8 2.3 0.25 11.6 0.1 2.3 2 2 0 2 2 2 0 AAA domain rve PF00665.21 gi|20092168|ref|NP_618243.1| - 6.5e-20 71.4 0.0 1.2e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20092168|ref|NP_618243.1| - 5.1e-05 22.7 0.0 0.00013 21.4 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20092168|ref|NP_618243.1| - 0.0018 17.7 0.0 0.0047 16.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|20092168|ref|NP_618243.1| - 0.0056 16.2 0.1 0.014 14.9 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.1 gi|20092168|ref|NP_618243.1| - 0.011 15.3 0.1 0.06 13.0 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20092168|ref|NP_618243.1| - 0.015 14.7 0.0 0.038 13.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|20092168|ref|NP_618243.1| - 0.026 14.1 0.0 0.54 9.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20092168|ref|NP_618243.1| - 0.042 13.4 0.1 0.096 12.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.10 gi|20092168|ref|NP_618243.1| - 0.047 13.5 0.2 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|20092168|ref|NP_618243.1| - 0.076 13.1 0.0 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|20092168|ref|NP_618243.1| - 0.086 12.4 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF746 PF05344.6 gi|20092168|ref|NP_618243.1| - 0.093 12.2 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|20092168|ref|NP_618243.1| - 0.097 12.6 0.0 0.64 10.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|20092168|ref|NP_618243.1| - 0.18 11.2 0.6 0.45 9.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DDE_Tnp_1_6 PF13751.1 gi|20092169|ref|NP_618244.1| - 9.1e-16 58.0 9.3 9.1e-16 58.0 6.4 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092169|ref|NP_618244.1| - 5.5e-10 39.1 1.5 5.5e-10 39.1 1.1 1.7 1 1 1 2 2 2 1 Transposase DDE domain RuvC PF02075.12 gi|20092169|ref|NP_618244.1| - 0.1 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Crossover junction endodeoxyribonuclease RuvC Glyco_transf_7C PF02709.9 gi|20092170|ref|NP_618245.1| - 0.039 13.4 2.0 0.082 12.3 1.4 1.6 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Peripla_BP_2 PF01497.13 gi|20092171|ref|NP_618246.1| - 6.6e-24 84.3 0.0 9.6e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF99 PF01949.11 gi|20092171|ref|NP_618246.1| - 0.096 11.7 0.0 0.18 10.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF99 ABC_tran PF00005.22 gi|20092172|ref|NP_618247.1| - 1.4e-31 109.6 0.0 1.9e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092172|ref|NP_618247.1| - 4.4e-11 43.2 0.4 2.5e-08 34.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20092172|ref|NP_618247.1| - 3.7e-09 36.1 0.2 0.0018 17.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|20092172|ref|NP_618247.1| - 0.00012 21.2 0.0 0.00019 20.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|20092172|ref|NP_618247.1| - 0.0002 20.6 2.6 0.021 14.0 1.8 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092172|ref|NP_618247.1| - 0.00023 20.6 0.2 0.00062 19.2 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20092172|ref|NP_618247.1| - 0.00044 20.6 0.5 0.00079 19.8 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20092172|ref|NP_618247.1| - 0.0005 20.2 0.7 0.0017 18.4 0.5 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|20092172|ref|NP_618247.1| - 0.00091 19.1 0.1 0.0069 16.2 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|20092172|ref|NP_618247.1| - 0.0037 17.2 0.0 0.0092 15.9 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain DUF1359 PF07097.6 gi|20092172|ref|NP_618247.1| - 0.0043 17.0 0.9 0.044 13.8 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1359) NTPase_1 PF03266.10 gi|20092172|ref|NP_618247.1| - 0.0067 16.1 0.2 0.069 12.8 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA PF00004.24 gi|20092172|ref|NP_618247.1| - 0.015 15.5 0.1 0.066 13.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|20092172|ref|NP_618247.1| - 0.016 14.8 0.2 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|20092172|ref|NP_618247.1| - 0.017 14.5 0.3 0.06 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|20092172|ref|NP_618247.1| - 0.018 14.7 0.0 0.035 13.7 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|20092172|ref|NP_618247.1| - 0.019 13.5 0.0 1.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|20092172|ref|NP_618247.1| - 0.024 14.2 0.2 0.045 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|20092172|ref|NP_618247.1| - 0.028 12.9 0.1 2.6 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|20092172|ref|NP_618247.1| - 0.048 12.5 1.2 0.17 10.7 0.8 1.9 1 1 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|20092172|ref|NP_618247.1| - 0.084 12.8 0.1 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|20092172|ref|NP_618247.1| - 0.1 13.0 0.9 0.2 12.1 0.1 1.9 2 1 0 2 2 2 0 Miro-like protein FecCD PF01032.13 gi|20092173|ref|NP_618248.1| - 2.4e-90 302.5 37.0 3e-90 302.2 25.6 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20092173|ref|NP_618248.1| - 0.0003 20.1 17.5 0.0003 20.1 12.1 1.8 1 1 0 1 1 1 1 ABC 3 transport family YrhC PF14143.1 gi|20092173|ref|NP_618248.1| - 4.4 7.3 12.8 3.8 7.5 0.4 4.0 2 1 1 3 3 3 0 YrhC-like protein DUF89 PF01937.14 gi|20092174|ref|NP_618249.1| - 1.1e-57 195.4 0.1 1.2e-57 195.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Cnd1 PF12717.2 gi|20092174|ref|NP_618249.1| - 0.035 13.9 0.0 0.049 13.4 0.0 1.3 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 OrfB_IS605 PF01385.14 gi|20092175|ref|NP_618250.1| - 1.1e-46 159.0 3.1 1.1e-46 159.0 2.2 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|20092175|ref|NP_618250.1| - 1.1e-23 82.7 0.6 2e-23 81.7 0.1 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|20092175|ref|NP_618250.1| - 1.4e-21 75.5 0.4 2.6e-21 74.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|20092175|ref|NP_618250.1| - 0.035 14.1 1.8 0.057 13.4 0.7 1.7 2 0 0 2 2 2 0 Piccolo Zn-finger DZR PF12773.2 gi|20092175|ref|NP_618250.1| - 0.054 13.3 0.7 0.11 12.3 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|20092175|ref|NP_618250.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|20092175|ref|NP_618250.1| - 0.96 9.3 6.6 11 6.0 4.6 2.4 1 1 0 1 1 1 0 Rubredoxin zf-RanBP PF00641.13 gi|20092175|ref|NP_618250.1| - 6.1 6.0 8.3 15 4.8 0.3 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Y1_Tnp PF01797.11 gi|20092176|ref|NP_618251.1| - 4.8e-21 74.8 1.5 5.3e-21 74.7 1.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Metalloenzyme PF01676.13 gi|20092179|ref|NP_618254.1| - 3e-12 46.4 0.0 5e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|20092179|ref|NP_618254.1| - 2.1e-06 27.3 0.0 3.6e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|20092179|ref|NP_618254.1| - 3.9e-06 26.2 0.0 7.1e-06 25.4 0.0 1.5 2 0 0 2 2 2 1 Sulfatase Cation_efflux PF01545.16 gi|20092180|ref|NP_618255.1| - 6.4e-66 222.3 3.7 7.5e-66 222.0 2.6 1.0 1 0 0 1 1 1 1 Cation efflux family Acylphosphatase PF00708.13 gi|20092181|ref|NP_618256.1| - 4e-19 68.4 0.1 4.6e-19 68.3 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DmpG_comm PF07836.6 gi|20092181|ref|NP_618256.1| - 0.0054 16.1 0.0 0.0069 15.7 0.0 1.3 1 0 0 1 1 1 1 DmpG-like communication domain MEDS PF14417.1 gi|20092182|ref|NP_618257.1| - 4.7e-93 309.5 0.3 2.3e-92 307.2 0.0 2.4 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.1 gi|20092182|ref|NP_618257.1| - 1e-77 257.1 0.2 2e-14 53.8 0.0 8.7 8 0 0 8 8 8 7 PAS domain PAS_4 PF08448.5 gi|20092182|ref|NP_618257.1| - 1.6e-71 237.3 0.0 7.4e-14 51.7 0.0 7.8 8 0 0 8 8 7 6 PAS fold PAS_3 PF08447.6 gi|20092182|ref|NP_618257.1| - 7.6e-58 192.5 1.6 3.1e-20 72.0 0.0 8.2 8 0 0 8 8 8 5 PAS fold PAS PF00989.19 gi|20092182|ref|NP_618257.1| - 4.6e-56 187.4 0.0 7.4e-13 48.2 0.0 7.6 7 0 0 7 7 7 6 PAS fold PAS_8 PF13188.1 gi|20092182|ref|NP_618257.1| - 1.3e-27 94.7 0.0 0.00024 20.8 0.0 6.0 5 0 0 5 5 5 5 PAS domain HATPase_c PF02518.21 gi|20092182|ref|NP_618257.1| - 1.4e-27 95.5 0.0 3.8e-27 94.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20092182|ref|NP_618257.1| - 1.7e-18 66.3 0.0 5.9e-18 64.6 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|20092182|ref|NP_618257.1| - 1.5e-06 28.4 0.0 0.17 12.1 0.0 5.3 6 0 0 6 6 6 2 PAS domain HATPase_c_5 PF14501.1 gi|20092182|ref|NP_618257.1| - 0.00029 20.4 0.0 0.00084 19.0 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|20092182|ref|NP_618257.1| - 0.0018 17.9 0.2 0.022 14.3 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1664 PF07889.7 gi|20092182|ref|NP_618257.1| - 0.032 14.0 0.7 6.3 6.6 0.1 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) HlyD PF00529.15 gi|20092182|ref|NP_618257.1| - 0.12 11.6 3.3 3.9 6.6 0.1 2.6 2 0 0 2 2 2 0 HlyD family secretion protein OEP PF02321.13 gi|20092182|ref|NP_618257.1| - 0.14 11.7 8.1 3.1 7.3 1.5 2.9 2 0 0 2 2 2 0 Outer membrane efflux protein TMPIT PF07851.8 gi|20092182|ref|NP_618257.1| - 0.35 9.9 3.5 9 5.2 0.3 2.4 2 0 0 2 2 2 0 TMPIT-like protein Osmo_CC PF08946.5 gi|20092182|ref|NP_618257.1| - 0.42 10.6 10.1 1.5 8.9 0.7 3.3 3 0 0 3 3 2 0 Osmosensory transporter coiled coil Laminin_II PF06009.7 gi|20092182|ref|NP_618257.1| - 4.3 7.0 11.9 19 4.9 0.3 4.1 4 0 0 4 4 4 0 Laminin Domain II DUF883 PF05957.8 gi|20092182|ref|NP_618257.1| - 4.8 7.6 8.0 11 6.4 1.0 3.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Disaggr_assoc PF08480.5 gi|20092183|ref|NP_618258.1| - 3.8e-84 281.0 8.9 3.8e-84 281.0 6.1 2.7 2 0 0 2 2 2 1 Disaggregatase related Pentapeptide PF00805.17 gi|20092183|ref|NP_618258.1| - 5.7e-09 35.0 2.8 0.00072 18.7 0.3 2.4 1 1 0 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|20092183|ref|NP_618258.1| - 5.5e-08 32.5 2.8 5.5e-08 32.5 1.9 2.3 2 0 0 2 2 2 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|20092183|ref|NP_618258.1| - 0.00015 21.5 9.8 0.00063 19.5 5.9 2.4 1 1 1 2 2 2 1 Pentapeptide repeats (9 copies) PAS_4 PF08448.5 gi|20092184|ref|NP_618259.1| - 5.2e-58 193.8 0.0 5.1e-23 81.1 0.0 5.5 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.1 gi|20092184|ref|NP_618259.1| - 5.4e-52 174.5 0.0 1.3e-18 67.2 0.0 5.8 5 0 0 5 5 5 4 PAS domain PAS PF00989.19 gi|20092184|ref|NP_618259.1| - 1.2e-42 144.2 0.0 2.5e-15 56.2 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|20092184|ref|NP_618259.1| - 1.8e-40 136.9 0.0 5.6e-21 74.4 0.1 4.7 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.7 gi|20092184|ref|NP_618259.1| - 2.8e-28 97.5 1.6 2.8e-28 97.5 1.1 3.2 4 0 0 4 4 4 1 Histidine kinase PAS_8 PF13188.1 gi|20092184|ref|NP_618259.1| - 1.7e-20 72.0 0.0 6.1e-07 29.0 0.0 4.6 4 0 0 4 4 4 3 PAS domain GAF_2 PF13185.1 gi|20092184|ref|NP_618259.1| - 7.7e-13 49.1 0.0 1.6e-12 48.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|20092184|ref|NP_618259.1| - 8.7e-10 38.2 0.1 2.9e-09 36.6 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|20092184|ref|NP_618259.1| - 6.4e-08 32.8 0.0 0.00011 22.3 0.0 3.9 3 0 0 3 3 3 1 PAS domain GAF_3 PF13492.1 gi|20092184|ref|NP_618259.1| - 9.2e-05 22.5 0.0 0.0036 17.3 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|20092184|ref|NP_618259.1| - 0.0092 15.9 12.3 1.3 9.0 0.0 6.8 6 2 0 6 6 6 1 PAS fold HWE_HK PF07536.9 gi|20092184|ref|NP_618259.1| - 0.019 15.4 2.5 0.023 15.1 0.1 2.5 2 0 0 2 2 1 0 HWE histidine kinase GAF PF01590.21 gi|20092184|ref|NP_618259.1| - 0.023 14.8 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 GAF domain HATPase_c_2 PF13581.1 gi|20092184|ref|NP_618259.1| - 0.066 13.0 0.0 0.36 10.6 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF883 PF05957.8 gi|20092185|ref|NP_618260.1| - 0.025 14.9 0.2 1 9.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) AnfO_nitrog PF09582.5 gi|20092186|ref|NP_618261.1| - 8.5e-68 227.4 0.0 9.6e-68 227.3 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) Nitro_FeMo-Co PF02579.12 gi|20092186|ref|NP_618261.1| - 0.0015 18.5 0.1 0.0032 17.4 0.1 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ILVD_EDD PF00920.16 gi|20092187|ref|NP_618262.1| - 2.6e-220 732.2 0.9 3e-220 732.0 0.6 1.0 1 0 0 1 1 1 1 Dehydratase family DDE_Tnp_IS1 PF03400.8 gi|20092188|ref|NP_618263.1| - 2.1e-13 50.4 0.3 2.4e-13 50.3 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20092189|ref|NP_618264.1| - 1.6e-06 27.5 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20092189|ref|NP_618264.1| - 7.9e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20092189|ref|NP_618264.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20092189|ref|NP_618264.1| - 0.00067 19.7 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20092189|ref|NP_618264.1| - 0.0061 16.0 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092189|ref|NP_618264.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20092189|ref|NP_618264.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20092189|ref|NP_618264.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20092189|ref|NP_618264.1| - 0.02 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20092189|ref|NP_618264.1| - 0.051 13.5 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20092189|ref|NP_618264.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20092189|ref|NP_618264.1| - 0.079 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20092189|ref|NP_618264.1| - 0.13 12.2 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20092189|ref|NP_618264.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20092189|ref|NP_618264.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|20092189|ref|NP_618264.1| - 5.6 6.7 7.5 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF2795 PF11387.3 gi|20092190|ref|NP_618265.1| - 1.6e-16 59.8 0.1 4.8e-16 58.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2795) Peptidase_C69 PF03577.10 gi|20092191|ref|NP_618266.1| - 1.9e-50 171.9 0.2 6.7e-49 166.8 0.1 2.1 1 1 0 1 1 1 1 Peptidase family C69 MarR_2 PF12802.2 gi|20092192|ref|NP_618267.1| - 1.2e-06 28.0 0.0 1.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20092192|ref|NP_618267.1| - 0.00016 20.9 0.0 0.00032 20.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|20092192|ref|NP_618267.1| - 0.00026 20.5 0.0 0.00037 20.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|20092192|ref|NP_618267.1| - 0.0017 18.0 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20092192|ref|NP_618267.1| - 0.0067 16.1 0.0 0.0094 15.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|20092192|ref|NP_618267.1| - 0.01 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF1495 PF07381.6 gi|20092192|ref|NP_618267.1| - 0.016 14.8 0.0 0.17 11.5 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_5 PF01022.15 gi|20092192|ref|NP_618267.1| - 0.02 14.5 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2042 PF09743.4 gi|20092192|ref|NP_618267.1| - 0.024 13.9 0.1 0.027 13.8 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) Rrf2 PF02082.15 gi|20092192|ref|NP_618267.1| - 0.026 14.6 0.0 0.037 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|20092192|ref|NP_618267.1| - 0.047 14.0 0.0 0.066 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|20092192|ref|NP_618267.1| - 0.055 13.2 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20092192|ref|NP_618267.1| - 0.067 12.9 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma54_DBD PF04552.8 gi|20092192|ref|NP_618267.1| - 0.12 11.8 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_9 PF08221.6 gi|20092192|ref|NP_618267.1| - 0.12 12.2 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain AA_permease_2 PF13520.1 gi|20092193|ref|NP_618268.1| - 8.2e-46 156.3 50.7 1e-45 156.1 35.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|20092193|ref|NP_618268.1| - 5.7e-31 107.3 47.4 7.5e-31 106.9 32.8 1.1 1 0 0 1 1 1 1 Amino acid permease TraX PF05857.6 gi|20092194|ref|NP_618269.1| - 0.022 14.4 0.5 0.046 13.3 0.3 1.6 1 0 0 1 1 1 0 TraX protein Lactamase_B PF00753.22 gi|20092195|ref|NP_618270.1| - 3.3e-23 82.3 0.0 4.9e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|20092195|ref|NP_618270.1| - 0.0001 22.3 0.0 0.0013 18.7 0.0 2.7 3 1 0 3 3 3 1 Flavodoxin Lactamase_B_3 PF13483.1 gi|20092195|ref|NP_618270.1| - 0.0002 21.1 0.0 0.00032 20.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.2 gi|20092195|ref|NP_618270.1| - 0.0016 18.4 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Lactamase_B_2 PF12706.2 gi|20092195|ref|NP_618270.1| - 0.068 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HHH PF00633.18 gi|20092195|ref|NP_618270.1| - 0.068 12.8 0.3 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif Nitro_FeMo-Co PF02579.12 gi|20092195|ref|NP_618270.1| - 0.07 13.2 0.2 1.3 9.1 0.0 2.6 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor Hydrolase_4 PF12146.3 gi|20092195|ref|NP_618270.1| - 0.12 12.1 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase Gln-synt_C PF00120.19 gi|20092196|ref|NP_618271.1| - 5.9e-46 156.7 0.0 1.4e-45 155.4 0.0 1.6 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|20092196|ref|NP_618271.1| - 2e-11 43.3 0.0 4.4e-11 42.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glycolipid_bind PF06475.6 gi|20092196|ref|NP_618271.1| - 0.14 11.3 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative glycolipid-binding YbjQ_1 PF01906.12 gi|20092197|ref|NP_618272.1| - 9e-38 128.9 7.1 9.9e-38 128.7 4.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|20092197|ref|NP_618272.1| - 0.016 15.3 1.4 0.088 12.9 0.2 2.1 2 0 0 2 2 2 0 Selenium binding protein DUF4156 PF13698.1 gi|20092197|ref|NP_618272.1| - 0.022 14.6 0.2 0.034 14.0 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Pox_I1 PF03289.8 gi|20092197|ref|NP_618272.1| - 0.048 12.5 0.0 0.048 12.4 0.0 1.0 1 0 0 1 1 1 0 Poxvirus protein I1 NTPase_P4 PF11602.3 gi|20092197|ref|NP_618272.1| - 0.053 12.5 0.3 0.053 12.5 0.2 1.1 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 Bax1-I PF01027.15 gi|20092198|ref|NP_618273.1| - 0.019 14.5 0.6 0.021 14.4 0.4 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Virul_fac_BrkB PF03631.10 gi|20092198|ref|NP_618273.1| - 0.057 12.7 1.7 0.062 12.6 1.2 1.0 1 0 0 1 1 1 0 Virulence factor BrkB DUF3784 PF12650.2 gi|20092198|ref|NP_618273.1| - 0.11 12.4 2.4 0.12 12.2 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Cg6151-P PF10233.4 gi|20092198|ref|NP_618273.1| - 0.5 10.3 6.3 0.64 10.0 4.4 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein CG6151-P Maff2 PF12750.2 gi|20092198|ref|NP_618273.1| - 0.84 9.2 4.7 1.4 8.5 3.3 1.4 1 1 0 1 1 1 0 Maff2 family Coiled-coil_56 PF09813.4 gi|20092198|ref|NP_618273.1| - 2.5 8.1 6.4 5.8 6.9 0.1 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 56 DDE_Tnp_1 PF01609.16 gi|20092200|ref|NP_618275.1| - 0.00012 21.6 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF2286 PF10051.4 gi|20092201|ref|NP_618276.1| - 0.0084 15.7 0.1 10 5.7 0.0 3.4 2 1 1 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2286) CfAFP PF05264.6 gi|20092201|ref|NP_618276.1| - 0.033 13.9 0.8 0.058 13.1 0.5 1.3 1 0 0 1 1 1 0 Choristoneura fumiferana antifreeze protein (CfAFP) DnaB_bind PF10410.4 gi|20092201|ref|NP_618276.1| - 0.061 13.3 2.6 38 4.3 0.0 4.5 4 0 0 4 4 4 0 DnaB-helicase binding domain of primase Serpin PF00079.15 gi|20092202|ref|NP_618277.1| - 1.4e-118 396.2 3.0 1.7e-118 396.0 2.1 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DUF1724 PF08350.5 gi|20092203|ref|NP_618278.1| - 9.7e-24 82.6 0.1 3.3e-23 80.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|20092203|ref|NP_618278.1| - 0.0041 17.4 0.0 0.0074 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|20092203|ref|NP_618278.1| - 0.0052 16.4 0.3 0.0091 15.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|20092203|ref|NP_618278.1| - 0.1 12.2 0.1 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.1 gi|20092203|ref|NP_618278.1| - 0.11 12.2 0.2 0.21 11.4 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1670 PF07900.6 gi|20092205|ref|NP_618280.1| - 2.5e-96 321.1 4.9 2.9e-96 320.9 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20092205|ref|NP_618280.1| - 1.5e-10 40.3 0.3 0.0031 17.1 0.0 3.2 2 1 1 3 3 3 3 Homeodomain-like domain HTH_29 PF13551.1 gi|20092205|ref|NP_618280.1| - 2.2e-05 24.5 0.0 2 8.6 0.0 3.3 2 1 1 3 3 3 2 Winged helix-turn helix HTH_24 PF13412.1 gi|20092205|ref|NP_618280.1| - 3.5e-05 23.1 0.0 2.1 7.7 0.0 3.4 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|20092205|ref|NP_618280.1| - 0.00051 19.9 0.1 1.9 8.5 0.0 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|20092205|ref|NP_618280.1| - 0.00061 19.3 0.0 0.31 10.7 0.0 3.0 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|20092205|ref|NP_618280.1| - 0.00069 19.0 0.3 0.77 9.2 0.0 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|20092205|ref|NP_618280.1| - 0.0023 17.7 0.8 0.33 10.8 0.0 3.2 2 1 1 3 3 3 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|20092205|ref|NP_618280.1| - 0.033 13.4 0.2 3.2 7.1 0.2 2.6 1 1 1 2 2 2 0 Sigma-70, region 4 Aconitase_2_N PF06434.8 gi|20092205|ref|NP_618280.1| - 0.041 13.2 0.0 0.076 12.4 0.0 1.5 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus HTH_7 PF02796.10 gi|20092205|ref|NP_618280.1| - 0.063 13.1 0.4 3.9 7.4 0.0 2.7 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|20092205|ref|NP_618280.1| - 0.099 12.3 0.2 14 5.3 0.1 2.9 3 0 0 3 3 3 0 HTH domain HTH_38 PF13936.1 gi|20092205|ref|NP_618280.1| - 0.1 12.1 0.1 1.7 8.2 0.1 2.6 3 1 0 3 3 3 0 Helix-turn-helix domain DUF1670 PF07900.6 gi|20092206|ref|NP_618281.1| - 3e-89 298.0 0.3 3.7e-89 297.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20092206|ref|NP_618281.1| - 1.5e-09 37.2 0.4 0.018 14.7 0.0 3.2 2 1 1 3 3 3 3 Homeodomain-like domain HTH_29 PF13551.1 gi|20092206|ref|NP_618281.1| - 1.7e-07 31.3 0.4 0.055 13.6 0.0 3.3 2 1 1 3 3 3 2 Winged helix-turn helix HTH_11 PF08279.7 gi|20092206|ref|NP_618281.1| - 3.7e-05 23.2 0.3 0.00033 20.2 0.0 2.5 2 1 1 3 3 3 1 HTH domain HTH_DeoR PF08220.7 gi|20092206|ref|NP_618281.1| - 0.00013 21.4 0.0 0.00031 20.2 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GerE PF00196.14 gi|20092206|ref|NP_618281.1| - 0.001 18.3 0.0 2.7 7.3 0.0 3.3 3 0 0 3 3 3 2 Bacterial regulatory proteins, luxR family Sigma70_ECF PF07638.6 gi|20092206|ref|NP_618281.1| - 0.0015 18.2 0.1 13 5.4 0.0 3.1 2 1 1 3 3 3 1 ECF sigma factor Sigma70_r4_2 PF08281.7 gi|20092206|ref|NP_618281.1| - 0.0015 17.9 0.8 2.7 7.5 0.0 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20092206|ref|NP_618281.1| - 0.0027 17.4 0.0 0.007 16.1 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|20092206|ref|NP_618281.1| - 0.0036 17.2 1.1 6.1 6.9 0.0 3.5 2 2 1 3 3 3 1 Helix-turn-helix domain Big_3_4 PF13754.1 gi|20092208|ref|NP_618283.1| - 7e-05 23.0 3.0 0.00014 22.1 0.5 2.5 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) DUF4466 PF14725.1 gi|20092208|ref|NP_618283.1| - 0.0031 16.8 0.3 0.19 10.9 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4466) MS_channel PF00924.13 gi|20092210|ref|NP_618285.1| - 7.9e-35 120.0 0.8 1.9e-34 118.8 0.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF373 PF04123.8 gi|20092210|ref|NP_618285.1| - 0.0056 15.7 0.3 0.0096 14.9 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP-synt_C PF00137.16 gi|20092210|ref|NP_618285.1| - 0.29 11.0 4.5 1.6 8.7 0.1 2.4 2 0 0 2 2 2 0 ATP synthase subunit C Endonuc_Holl PF10107.4 gi|20092212|ref|NP_618287.1| - 1e-64 216.9 0.3 1.3e-64 216.6 0.2 1.0 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase DUF4446 PF14584.1 gi|20092212|ref|NP_618287.1| - 0.06 13.1 0.0 0.084 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF3290 PF11694.3 gi|20092212|ref|NP_618287.1| - 0.072 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF4197 PF13852.1 gi|20092212|ref|NP_618287.1| - 0.093 12.2 0.2 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4197) NTPase_1 PF03266.10 gi|20092214|ref|NP_618289.1| - 3.2e-56 189.6 0.0 3.6e-56 189.4 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|20092214|ref|NP_618289.1| - 1.4e-09 37.5 0.0 1.8e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.1 gi|20092214|ref|NP_618289.1| - 1e-06 29.5 0.2 3e-06 28.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20092214|ref|NP_618289.1| - 6.1e-05 23.3 0.2 0.00011 22.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20092214|ref|NP_618289.1| - 0.00013 22.0 0.0 0.00025 21.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|20092214|ref|NP_618289.1| - 0.00051 18.8 0.4 0.00051 18.8 0.3 1.5 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|20092214|ref|NP_618289.1| - 0.0016 18.4 0.4 0.0036 17.3 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|20092214|ref|NP_618289.1| - 0.0021 18.2 0.2 0.005 17.0 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2608 PF11019.3 gi|20092214|ref|NP_618289.1| - 0.0037 16.3 0.0 0.0047 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2608) AAA_19 PF13245.1 gi|20092214|ref|NP_618289.1| - 0.0051 16.5 1.8 0.0055 16.4 0.1 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_28 PF13521.1 gi|20092214|ref|NP_618289.1| - 0.011 15.7 0.6 0.017 15.0 0.4 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20092214|ref|NP_618289.1| - 0.014 15.0 0.3 0.032 13.9 0.1 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|20092214|ref|NP_618289.1| - 0.016 14.6 1.4 0.072 12.4 1.0 2.1 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|20092214|ref|NP_618289.1| - 0.017 15.6 0.3 0.035 14.6 0.2 1.6 1 1 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|20092214|ref|NP_618289.1| - 0.02 14.6 0.3 0.75 9.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|20092214|ref|NP_618289.1| - 0.021 14.0 0.2 0.065 12.4 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|20092214|ref|NP_618289.1| - 0.027 14.3 0.0 0.28 11.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|20092214|ref|NP_618289.1| - 0.031 14.1 0.2 0.11 12.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|20092214|ref|NP_618289.1| - 0.036 13.6 0.2 0.75 9.3 0.1 2.4 2 1 1 3 3 3 0 AAA domain SRP54 PF00448.17 gi|20092214|ref|NP_618289.1| - 0.038 13.4 0.2 0.12 11.8 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|20092214|ref|NP_618289.1| - 0.043 13.7 0.3 0.063 13.2 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|20092214|ref|NP_618289.1| - 0.049 13.2 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|20092214|ref|NP_618289.1| - 0.052 13.3 0.2 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 ArsA_ATPase PF02374.10 gi|20092214|ref|NP_618289.1| - 0.053 12.5 0.2 0.084 11.9 0.1 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_30 PF13604.1 gi|20092214|ref|NP_618289.1| - 0.054 13.0 1.2 0.13 11.8 0.9 1.8 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|20092214|ref|NP_618289.1| - 0.058 12.3 0.1 0.11 11.4 0.1 1.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.14 gi|20092214|ref|NP_618289.1| - 0.063 12.7 0.4 0.11 11.8 0.3 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.17 gi|20092214|ref|NP_618289.1| - 0.094 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|20092214|ref|NP_618289.1| - 0.097 12.2 0.1 0.19 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|20092214|ref|NP_618289.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.4 1 1 0 1 1 1 0 KaiC CbiA PF01656.18 gi|20092214|ref|NP_618289.1| - 0.31 10.4 2.1 4.2 6.7 1.3 2.5 1 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Orexin_rec2 PF03827.8 gi|20092215|ref|NP_618290.1| - 0.13 12.2 0.3 0.21 11.6 0.2 1.3 1 0 0 1 1 1 0 Orexin receptor type 2 MMR_HSR1 PF01926.18 gi|20092216|ref|NP_618291.1| - 4.6e-17 62.0 1.8 4.8e-13 49.0 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|20092216|ref|NP_618291.1| - 9.7e-10 37.9 2.2 0.0007 18.9 0.1 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|20092216|ref|NP_618291.1| - 1.3e-06 28.0 1.3 7.2e-05 22.3 0.1 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|20092216|ref|NP_618291.1| - 0.00033 20.5 2.0 4.2 7.1 0.1 3.3 2 1 1 3 3 3 3 Dynamin family DUF258 PF03193.11 gi|20092216|ref|NP_618291.1| - 0.0004 19.6 0.1 0.00073 18.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|20092216|ref|NP_618291.1| - 0.00088 18.4 0.0 0.0019 17.3 0.0 1.5 1 0 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|20092216|ref|NP_618291.1| - 0.0013 19.2 0.2 0.36 11.3 0.0 2.8 2 2 0 2 2 2 1 Miro-like protein cobW PF02492.14 gi|20092216|ref|NP_618291.1| - 0.0021 17.5 0.5 0.0021 17.5 0.4 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|20092216|ref|NP_618291.1| - 0.11 12.0 0.2 0.29 10.6 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|20092216|ref|NP_618291.1| - 0.14 11.5 0.3 3.1 7.1 0.0 2.6 3 0 0 3 3 3 0 Ras family ArgK PF03308.11 gi|20092216|ref|NP_618291.1| - 0.18 10.5 2.0 1.6 7.4 0.1 2.2 1 1 1 2 2 2 0 ArgK protein HATPase_c PF02518.21 gi|20092217|ref|NP_618292.1| - 3e-33 113.8 0.1 6.4e-33 112.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20092217|ref|NP_618292.1| - 1.1e-26 93.2 3.1 2.8e-12 46.9 0.2 3.8 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|20092217|ref|NP_618292.1| - 2.3e-25 88.5 0.2 8.8e-11 41.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|20092217|ref|NP_618292.1| - 1.3e-23 83.1 0.1 7.5e-23 80.6 0.0 2.4 3 0 0 3 3 3 1 Response regulator receiver domain PAS_8 PF13188.1 gi|20092217|ref|NP_618292.1| - 5.5e-21 73.6 0.2 1.3e-07 31.1 0.0 3.8 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|20092217|ref|NP_618292.1| - 1.8e-20 72.6 0.1 9.4e-20 70.3 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20092217|ref|NP_618292.1| - 3.7e-15 55.9 0.0 0.00021 21.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|20092217|ref|NP_618292.1| - 4.2e-09 36.3 0.0 0.0021 18.1 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|20092217|ref|NP_618292.1| - 0.0062 16.5 0.8 3.6 7.6 0.0 4.1 3 1 0 3 3 3 1 PAS fold Frataxin_Cyay PF01491.11 gi|20092217|ref|NP_618292.1| - 0.078 12.7 0.2 0.3 10.9 0.1 2.1 1 0 0 1 1 1 0 Frataxin-like domain dCMP_cyt_deam_1 PF00383.17 gi|20092219|ref|NP_618294.1| - 7.8e-25 86.4 0.0 1e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|20092219|ref|NP_618294.1| - 0.069 12.7 0.1 0.096 12.3 0.1 1.2 1 0 0 1 1 1 0 MafB19-like deaminase PPDK_N PF01326.14 gi|20092220|ref|NP_618295.1| - 2.8e-92 309.2 0.0 6.1e-92 308.1 0.0 1.4 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|20092220|ref|NP_618295.1| - 4.4e-57 193.1 0.1 6.8e-57 192.5 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|20092220|ref|NP_618295.1| - 1.6e-24 85.2 0.4 4.4e-24 83.8 0.3 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain AAA_4 PF04326.9 gi|20092222|ref|NP_618297.1| - 1.3e-22 80.2 0.0 2.1e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain MarC PF01914.12 gi|20092223|ref|NP_618298.1| - 4e-56 189.3 15.3 4.4e-56 189.2 10.6 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|20092223|ref|NP_618298.1| - 6.8e-06 25.5 8.2 1.2e-05 24.6 5.7 1.5 1 1 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|20092223|ref|NP_618298.1| - 0.00022 20.7 10.5 0.0011 18.4 7.3 1.9 1 1 0 1 1 1 1 Integral membrane protein TerC family PsbX PF06596.6 gi|20092223|ref|NP_618298.1| - 0.063 12.9 0.9 0.063 12.9 0.6 3.7 5 0 0 5 5 5 0 Photosystem II reaction centre X protein (PsbX) IncA PF04156.9 gi|20092223|ref|NP_618298.1| - 0.1 12.1 0.1 0.1 12.1 0.1 2.9 4 1 0 4 4 4 0 IncA protein DUF3278 PF11683.3 gi|20092223|ref|NP_618298.1| - 0.32 10.9 5.3 1.6 8.7 0.5 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3278) CobD_Cbib PF03186.8 gi|20092223|ref|NP_618298.1| - 1.1 8.2 3.8 0.26 10.3 0.1 1.7 2 0 0 2 2 2 0 CobD/Cbib protein DUF4149 PF13664.1 gi|20092223|ref|NP_618298.1| - 7.3 6.7 9.5 3.8 7.6 0.5 2.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4149) DUF1356 PF07092.7 gi|20092224|ref|NP_618299.1| - 0.021 14.0 0.0 0.022 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) C1_4 PF07975.7 gi|20092224|ref|NP_618299.1| - 0.26 11.2 1.5 0.41 10.6 1.0 1.5 1 1 0 1 1 1 0 TFIIH C1-like domain Tic20 PF09685.5 gi|20092225|ref|NP_618300.1| - 2.5e-10 40.2 11.1 5e-10 39.3 7.7 1.4 1 1 0 1 1 1 1 Tic20-like protein Mem_trans PF03547.13 gi|20092225|ref|NP_618300.1| - 0.17 10.1 1.4 0.18 10.0 0.9 1.1 1 0 0 1 1 1 0 Membrane transport protein DUF4282 PF14110.1 gi|20092225|ref|NP_618300.1| - 7.1 6.9 7.9 2.6 8.3 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF4519 PF15012.1 gi|20092226|ref|NP_618301.1| - 4.1 7.3 6.3 0.42 10.5 1.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) HTH_37 PF13744.1 gi|20092227|ref|NP_618302.1| - 0.019 14.7 0.6 0.04 13.7 0.4 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S3Ae PF01015.13 gi|161484933|ref|NP_618303.2| - 6e-72 241.0 4.2 7.3e-72 240.8 2.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF3237 PF11578.3 gi|161484933|ref|NP_618303.2| - 0.044 13.0 0.1 0.053 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) DUF3672 PF12421.3 gi|161484933|ref|NP_618303.2| - 0.15 12.2 2.0 0.22 11.6 1.4 1.4 1 1 0 1 1 1 0 Fibronectin type III protein TPR_12 PF13424.1 gi|20092230|ref|NP_618305.1| - 8e-39 131.4 35.9 8.7e-07 28.7 0.3 11.1 6 4 5 11 11 11 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092230|ref|NP_618305.1| - 9.1e-25 86.1 31.4 0.00019 21.0 0.4 9.6 6 3 4 10 10 10 9 TPR repeat TPR_10 PF13374.1 gi|20092230|ref|NP_618305.1| - 2.9e-21 74.6 14.1 0.004 17.0 0.0 12.7 14 0 0 14 14 14 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092230|ref|NP_618305.1| - 4.4e-19 67.2 8.7 3 8.7 0.0 13.5 11 4 3 14 14 12 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092230|ref|NP_618305.1| - 8.2e-17 59.7 54.1 0.0024 17.6 0.0 14.6 15 0 0 15 15 15 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092230|ref|NP_618305.1| - 1.2e-15 57.7 14.1 0.0018 18.9 0.0 8.9 8 1 1 9 9 9 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20092230|ref|NP_618305.1| - 1.2e-15 56.2 49.3 0.00082 18.8 0.0 13.7 14 1 0 14 14 13 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092230|ref|NP_618305.1| - 1.8e-13 49.1 59.4 0.0004 19.9 0.0 14.1 16 1 1 17 17 14 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092230|ref|NP_618305.1| - 6.9e-13 48.7 26.2 0.87 9.9 2.0 10.5 7 3 3 10 10 10 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092230|ref|NP_618305.1| - 6e-11 41.2 24.5 0.68 9.8 0.0 12.7 14 1 0 14 14 13 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092230|ref|NP_618305.1| - 1.5e-08 34.1 19.6 4.5 7.7 0.1 11.8 12 2 0 12 12 12 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|20092230|ref|NP_618305.1| - 8.4e-07 28.7 10.2 0.12 12.0 0.0 7.6 4 2 4 8 8 8 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_6 PF13174.1 gi|20092230|ref|NP_618305.1| - 0.0001 22.5 32.1 8.3 7.1 0.1 12.7 13 1 0 13 13 13 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092230|ref|NP_618305.1| - 0.0004 20.4 19.9 0.041 14.0 0.2 7.4 5 4 2 8 8 8 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|20092230|ref|NP_618305.1| - 0.0021 17.8 0.5 9.9 6.1 0.0 6.1 8 1 0 8 8 6 0 Tetratricopeptide repeat MIT PF04212.13 gi|20092230|ref|NP_618305.1| - 0.0056 16.5 19.7 0.13 12.1 0.0 6.9 8 0 0 8 8 7 2 MIT (microtubule interacting and transport) domain TPR_4 PF07721.9 gi|20092230|ref|NP_618305.1| - 0.046 14.1 1.3 6.2 7.5 0.1 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat Lactamase_B PF00753.22 gi|20092231|ref|NP_618306.1| - 5e-14 52.4 0.1 8.8e-14 51.6 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|20092231|ref|NP_618306.1| - 0.00029 20.4 0.0 0.00039 20.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|20092231|ref|NP_618306.1| - 0.025 14.2 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain YusW PF14039.1 gi|20092232|ref|NP_618307.1| - 0.0039 17.4 5.4 0.091 13.0 0.8 2.0 1 1 1 2 2 2 2 YusW-like protein TPR_MLP1_2 PF07926.7 gi|20092232|ref|NP_618307.1| - 0.016 14.9 2.6 0.021 14.5 1.8 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein MCPsignal PF00015.16 gi|20092232|ref|NP_618307.1| - 0.04 13.4 0.1 0.042 13.3 0.0 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Ribosomal_L29 PF00831.18 gi|20092232|ref|NP_618307.1| - 0.073 12.7 3.9 1.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Ribosomal L29 protein Phage_GP20 PF06810.6 gi|20092232|ref|NP_618307.1| - 0.087 12.2 4.7 0.13 11.7 3.3 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 Phasin PF05597.6 gi|20092232|ref|NP_618307.1| - 0.11 12.2 1.6 0.13 12.0 1.1 1.1 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4164 PF13747.1 gi|20092232|ref|NP_618307.1| - 0.32 11.1 2.4 2.4 8.3 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) NMD3 PF04981.8 gi|20092233|ref|NP_618308.1| - 0.072 12.1 0.0 0.091 11.8 0.0 1.1 1 0 0 1 1 1 0 NMD3 family UPF0150 PF03681.10 gi|20092234|ref|NP_618309.1| - 2.5e-21 75.0 0.2 2.7e-21 74.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|20092234|ref|NP_618309.1| - 1.3e-06 27.8 0.0 1.3e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) UPF0150 PF03681.10 gi|20092235|ref|NP_618310.1| - 1e-17 63.4 0.2 1.5e-17 62.9 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|20092235|ref|NP_618310.1| - 6.5e-07 29.3 0.1 8.1e-07 29.0 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3832) Semialdhyde_dh PF01118.19 gi|20092235|ref|NP_618310.1| - 0.011 16.0 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF4349 PF14257.1 gi|20092235|ref|NP_618310.1| - 0.059 12.5 0.1 0.075 12.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) ExbD PF02472.11 gi|20092235|ref|NP_618310.1| - 0.065 13.2 0.0 0.077 12.9 0.0 1.1 1 0 0 1 1 1 0 Biopolymer transport protein ExbD/TolR YcfA PF07927.7 gi|20092235|ref|NP_618310.1| - 0.065 13.1 0.1 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 YcfA-like protein LCM PF04072.9 gi|20092236|ref|NP_618311.1| - 1.4e-46 158.3 0.0 1.8e-46 158.0 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase UPF0150 PF03681.10 gi|20092237|ref|NP_618312.1| - 6.5e-16 57.7 0.2 7.1e-16 57.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|20092237|ref|NP_618312.1| - 0.00011 21.6 0.0 0.00012 21.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) PIN PF01850.16 gi|20092238|ref|NP_618313.1| - 2.2e-12 47.3 0.0 8.8e-12 45.4 0.0 1.8 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|20092238|ref|NP_618313.1| - 0.011 16.3 0.0 0.017 15.7 0.0 1.3 1 0 0 1 1 1 0 PIN domain DUF4325 PF14213.1 gi|20092239|ref|NP_618314.1| - 1.9e-18 65.8 0.0 2.9e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4325) PAS_9 PF13426.1 gi|20092239|ref|NP_618314.1| - 0.091 13.1 0.0 0.2 12.0 0.0 1.5 1 1 0 1 1 1 0 PAS domain LigD_N PF13298.1 gi|20092240|ref|NP_618315.1| - 1.3e-40 137.7 0.0 1.6e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) Rubrerythrin PF02915.12 gi|20092241|ref|NP_618316.1| - 7.8e-08 32.7 0.9 1e-07 32.3 0.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|20092241|ref|NP_618316.1| - 0.0013 18.6 0.1 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.8 gi|20092241|ref|NP_618316.1| - 0.0022 17.4 0.1 0.0028 17.1 0.1 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF4142 PF13628.1 gi|20092241|ref|NP_618316.1| - 0.0065 16.5 0.3 0.0085 16.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) Coat_F PF07875.7 gi|20092241|ref|NP_618316.1| - 0.16 12.1 0.8 0.32 11.1 0.4 1.7 2 0 0 2 2 2 0 Coat F domain Peptidase_C1 PF00112.18 gi|20092242|ref|NP_618317.1| - 1.4e-27 97.0 0.6 3.9e-27 95.5 0.0 1.9 2 0 0 2 2 2 1 Papain family cysteine protease PKD PF00801.15 gi|20092242|ref|NP_618317.1| - 1e-08 34.8 3.1 1e-08 34.8 2.1 4.1 3 1 1 4 4 4 2 PKD domain Peptidase_C1_2 PF03051.10 gi|20092242|ref|NP_618317.1| - 7.6e-06 24.6 0.4 0.0065 15.0 0.1 2.2 2 0 0 2 2 2 2 Peptidase C1-like family Pcc1 PF09341.5 gi|20092243|ref|NP_618318.1| - 0.004 17.1 0.0 0.0059 16.6 0.0 1.3 1 1 0 1 1 1 1 Transcription factor Pcc1 Cas_Csy3 PF09615.5 gi|20092243|ref|NP_618318.1| - 0.14 11.2 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy3) DHH PF01368.15 gi|20092244|ref|NP_618319.1| - 1.4e-15 57.1 0.1 2.9e-15 56.1 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|20092244|ref|NP_618319.1| - 3e-14 52.4 0.3 1e-13 50.7 0.2 2.0 1 0 0 1 1 1 1 DHHA1 domain EIIA-man PF03610.11 gi|20092244|ref|NP_618319.1| - 0.015 15.3 0.7 0.4 10.7 0.0 2.9 4 0 0 4 4 4 0 PTS system fructose IIA component IstB_IS21 PF01695.12 gi|20092245|ref|NP_618320.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20092245|ref|NP_618320.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20092245|ref|NP_618320.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20092245|ref|NP_618320.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20092245|ref|NP_618320.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20092245|ref|NP_618320.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20092245|ref|NP_618320.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20092245|ref|NP_618320.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20092245|ref|NP_618320.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092245|ref|NP_618320.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20092245|ref|NP_618320.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20092245|ref|NP_618320.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20092245|ref|NP_618320.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20092245|ref|NP_618320.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20092245|ref|NP_618320.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20092245|ref|NP_618320.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20092245|ref|NP_618320.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20092245|ref|NP_618320.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20092245|ref|NP_618320.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20092245|ref|NP_618320.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20092245|ref|NP_618320.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20092245|ref|NP_618320.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20092245|ref|NP_618320.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20092245|ref|NP_618320.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20092245|ref|NP_618320.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20092245|ref|NP_618320.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20092245|ref|NP_618320.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20092245|ref|NP_618320.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20092246|ref|NP_618321.1| - 7.6e-20 71.2 0.0 1.4e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20092246|ref|NP_618321.1| - 7.2e-07 28.6 0.1 1.7e-06 27.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20092246|ref|NP_618321.1| - 1.2e-05 25.0 0.2 2.8e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|20092246|ref|NP_618321.1| - 3.4e-05 23.3 0.0 9e-05 21.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.1 gi|20092246|ref|NP_618321.1| - 3.8e-05 23.1 0.0 8.6e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain Sigma70_r4 PF04545.11 gi|20092246|ref|NP_618321.1| - 0.0019 17.4 0.2 0.026 13.8 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|20092246|ref|NP_618321.1| - 0.0068 16.5 0.0 0.2 11.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20092246|ref|NP_618321.1| - 0.0085 15.6 0.1 0.047 13.2 0.0 2.1 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_Tc3_1 PF11427.3 gi|20092246|ref|NP_618321.1| - 0.0097 15.5 0.0 0.035 13.7 0.0 1.9 1 0 0 1 1 1 1 Tc3 transposase HTH_3 PF01381.17 gi|20092246|ref|NP_618321.1| - 0.015 15.1 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20092246|ref|NP_618321.1| - 0.032 14.3 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20092246|ref|NP_618321.1| - 0.033 14.1 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20092246|ref|NP_618321.1| - 0.05 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4_2 PF08281.7 gi|20092246|ref|NP_618321.1| - 0.052 13.0 0.1 0.15 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|20092246|ref|NP_618321.1| - 0.073 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding rve_2 PF13333.1 gi|20092246|ref|NP_618321.1| - 0.099 12.7 0.0 0.3 11.1 0.0 1.9 1 0 0 1 1 1 0 Integrase core domain MerR_1 PF13411.1 gi|20092246|ref|NP_618321.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein MS_channel PF00924.13 gi|20092248|ref|NP_618323.1| - 1.7e-27 96.1 7.6 6.4e-27 94.2 5.3 2.0 1 1 0 1 1 1 1 Mechanosensitive ion channel AgrB PF04647.10 gi|20092248|ref|NP_618323.1| - 0.96 8.4 8.5 1.9 7.5 5.9 1.5 1 1 0 1 1 1 0 Accessory gene regulator B AzlC PF03591.9 gi|20092249|ref|NP_618324.1| - 4.5e-43 146.6 8.2 4.5e-43 146.6 5.7 1.8 2 0 0 2 2 2 1 AzlC protein Sulfate_tra_GLY PF13792.1 gi|20092249|ref|NP_618324.1| - 0.043 13.4 0.5 0.043 13.4 0.4 2.0 2 0 0 2 2 2 0 Sulfate transporter N-terminal domain with GLY motif AzlD PF05437.7 gi|20092250|ref|NP_618325.1| - 3.1e-20 71.9 6.9 3.6e-20 71.7 4.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) NIR_SIR PF01077.17 gi|20092251|ref|NP_618326.1| - 9.3e-39 132.3 0.2 1.2e-38 131.9 0.2 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|20092251|ref|NP_618326.1| - 8.1e-20 70.2 0.0 1.6e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|20092251|ref|NP_618326.1| - 6.8e-14 50.7 13.5 6.5e-07 28.6 1.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20092251|ref|NP_618326.1| - 1.5e-09 37.4 10.8 1.5e-09 37.4 7.5 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092251|ref|NP_618326.1| - 5e-09 36.4 10.7 5e-09 36.4 7.4 2.7 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092251|ref|NP_618326.1| - 2.7e-08 33.3 18.0 7.1e-05 22.5 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092251|ref|NP_618326.1| - 8.7e-08 31.6 20.9 5.3e-05 22.8 2.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20092251|ref|NP_618326.1| - 6.8e-07 29.4 11.6 6.8e-07 29.4 8.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20092251|ref|NP_618326.1| - 2.2e-05 24.2 23.6 0.00019 21.1 2.5 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092251|ref|NP_618326.1| - 0.0007 19.5 15.1 0.0089 16.0 0.1 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20092251|ref|NP_618326.1| - 0.0012 19.4 0.4 0.0012 19.4 0.3 4.3 4 1 0 4 4 4 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|20092251|ref|NP_618326.1| - 0.0012 19.5 15.2 0.023 15.4 0.5 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20092251|ref|NP_618326.1| - 0.011 15.9 12.6 0.026 14.8 1.3 3.9 4 1 0 4 4 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20092251|ref|NP_618326.1| - 0.039 14.5 24.7 0.16 12.5 3.3 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain DUF561 PF04481.7 gi|20092251|ref|NP_618326.1| - 0.11 11.4 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Fer4_13 PF13370.1 gi|20092251|ref|NP_618326.1| - 0.14 12.6 0.5 0.14 12.6 0.3 3.8 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|20092251|ref|NP_618326.1| - 0.28 11.6 19.1 2.2 8.7 2.1 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20092251|ref|NP_618326.1| - 5.9 7.3 21.1 0.67 10.3 1.9 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain DUF342 PF03961.8 gi|20092252|ref|NP_618327.1| - 1.8e-06 26.6 3.5 3e-06 25.9 2.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF342) BCD PF15461.1 gi|20092252|ref|NP_618327.1| - 0.0047 16.3 7.2 0.0047 16.3 5.0 2.1 1 1 1 2 2 2 1 Beta-carotene 15,15'-dioxygenase Nitroreductase PF00881.19 gi|20092253|ref|NP_618328.1| - 3.7e-35 121.1 0.0 4.4e-35 120.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Hexapep PF00132.19 gi|20092254|ref|NP_618329.1| - 1.1e-10 40.4 12.8 4.3e-07 29.1 3.5 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20092254|ref|NP_618329.1| - 0.13 11.8 11.4 1.7 8.2 0.3 2.7 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase Mrr_cat PF04471.7 gi|20092255|ref|NP_618330.1| - 7.1e-10 38.7 0.0 1.6e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease Atg14 PF10186.4 gi|20092255|ref|NP_618330.1| - 0.34 9.7 4.5 0.53 9.1 3.1 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Cytokin_check_N PF10407.4 gi|20092256|ref|NP_618331.1| - 0.054 13.1 0.6 1 9.0 0.1 2.4 2 0 0 2 2 2 0 Cdc14 phosphatase binding protein N-terminus Zn_clus PF00172.13 gi|20092256|ref|NP_618331.1| - 0.29 11.0 0.2 0.29 11.0 0.1 2.1 2 1 0 2 2 2 0 Fungal Zn(2)-Cys(6) binuclear cluster domain DUF258 PF03193.11 gi|20092257|ref|NP_618332.1| - 3.9e-48 162.6 0.0 6.8e-48 161.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20092257|ref|NP_618332.1| - 2e-09 37.4 0.0 3.9e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|20092257|ref|NP_618332.1| - 2.8e-08 34.1 0.0 4.1e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|20092257|ref|NP_618332.1| - 1.5e-05 25.4 0.0 0.0004 20.8 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein GTP_EFTU PF00009.22 gi|20092257|ref|NP_618332.1| - 4.8e-05 22.8 0.6 0.022 14.2 0.0 2.7 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|20092257|ref|NP_618332.1| - 0.00016 20.9 0.0 0.079 12.2 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B Septin PF00735.13 gi|20092257|ref|NP_618332.1| - 0.00017 20.6 0.0 0.00025 20.1 0.0 1.2 1 0 0 1 1 1 1 Septin cobW PF02492.14 gi|20092257|ref|NP_618332.1| - 0.00017 21.0 0.1 0.33 10.3 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|20092257|ref|NP_618332.1| - 0.00019 21.3 1.0 0.015 15.0 0.4 2.5 1 1 1 2 2 2 1 Dynamin family AAA_29 PF13555.1 gi|20092257|ref|NP_618332.1| - 0.00023 20.6 0.0 0.00047 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20092257|ref|NP_618332.1| - 0.00074 19.5 0.1 0.0048 16.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1_C PF08438.5 gi|20092257|ref|NP_618332.1| - 0.0015 18.7 0.0 0.67 10.2 0.0 2.9 3 0 0 3 3 3 1 GTPase of unknown function C-terminal AAA_10 PF12846.2 gi|20092257|ref|NP_618332.1| - 0.0018 17.7 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AIG1 PF04548.11 gi|20092257|ref|NP_618332.1| - 0.0037 16.3 0.1 0.0058 15.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family PduV-EutP PF10662.4 gi|20092257|ref|NP_618332.1| - 0.0066 15.9 0.0 2.5 7.5 0.0 2.7 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|20092257|ref|NP_618332.1| - 0.012 15.0 0.0 0.023 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20092257|ref|NP_618332.1| - 0.014 15.0 0.2 0.031 13.9 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|20092257|ref|NP_618332.1| - 0.018 14.9 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Ras PF00071.17 gi|20092257|ref|NP_618332.1| - 0.026 13.9 0.1 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 Ras family Zeta_toxin PF06414.7 gi|20092257|ref|NP_618332.1| - 0.03 13.4 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|20092257|ref|NP_618332.1| - 0.039 13.8 0.0 0.096 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|20092257|ref|NP_618332.1| - 0.059 12.7 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF815 PF05673.8 gi|20092257|ref|NP_618332.1| - 0.064 12.1 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|20092257|ref|NP_618332.1| - 0.064 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|20092257|ref|NP_618332.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Guanylate kinase AAA_17 PF13207.1 gi|20092257|ref|NP_618332.1| - 0.16 12.8 0.8 0.36 11.6 0.6 1.9 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|20092257|ref|NP_618332.1| - 0.16 11.7 0.2 0.74 9.5 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 RNA_helicase PF00910.17 gi|20092257|ref|NP_618332.1| - 0.17 12.0 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase DUF362 PF04015.7 gi|20092258|ref|NP_618333.1| - 3.9e-28 98.3 0.2 3.2e-27 95.3 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|20092258|ref|NP_618333.1| - 3.6e-16 58.0 17.9 5.6e-08 32.0 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20092258|ref|NP_618333.1| - 5.9e-15 54.3 14.5 6.2e-08 32.1 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20092258|ref|NP_618333.1| - 4.2e-13 49.3 33.5 2.3e-08 34.1 8.7 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092258|ref|NP_618333.1| - 4.2e-13 49.4 22.5 9.3e-11 41.9 7.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092258|ref|NP_618333.1| - 1.3e-11 44.1 8.8 3e-11 42.9 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092258|ref|NP_618333.1| - 2.6e-09 37.7 8.2 0.00015 22.4 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|20092258|ref|NP_618333.1| - 4.2e-09 35.7 16.0 0.00017 21.3 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092258|ref|NP_618333.1| - 1e-08 34.8 10.2 0.00018 21.2 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20092258|ref|NP_618333.1| - 3.1e-08 33.8 10.4 9.2e-05 22.7 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20092258|ref|NP_618333.1| - 5.3e-08 32.8 20.5 0.00036 20.8 4.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20092258|ref|NP_618333.1| - 1.1e-06 28.5 12.0 4.6e-06 26.5 8.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092258|ref|NP_618333.1| - 1.2e-06 28.4 14.6 0.0011 19.0 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20092258|ref|NP_618333.1| - 2.2e-06 27.8 6.9 0.012 15.9 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20092258|ref|NP_618333.1| - 6.5e-05 23.4 10.0 0.043 14.3 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|20092258|ref|NP_618333.1| - 0.0033 17.7 13.5 0.28 11.5 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain DUF2088 PF09861.4 gi|20092258|ref|NP_618333.1| - 0.0044 16.0 0.2 0.0062 15.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF1757 PF08560.5 gi|20092258|ref|NP_618333.1| - 0.038 13.6 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1757) Fer4_11 PF13247.1 gi|20092258|ref|NP_618333.1| - 0.046 13.6 2.7 0.082 12.8 1.9 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF498 PF04430.9 gi|20092259|ref|NP_618334.1| - 1.4e-13 50.3 0.0 1.6e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF3343 PF11823.3 gi|20092259|ref|NP_618334.1| - 0.065 12.4 0.2 0.13 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Radical_SAM PF04055.16 gi|20092260|ref|NP_618335.1| - 1.2e-17 64.5 0.0 2.7e-17 63.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DZR PF12773.2 gi|20092260|ref|NP_618335.1| - 0.00084 19.1 0.1 0.00084 19.1 0.1 2.9 2 1 0 2 2 1 1 Double zinc ribbon Fer4_12 PF13353.1 gi|20092260|ref|NP_618335.1| - 0.0015 18.6 0.5 0.0033 17.5 0.0 1.7 2 0 0 2 2 1 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|20092260|ref|NP_618335.1| - 0.0069 15.8 1.6 3.7 7.1 0.0 2.8 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|20092260|ref|NP_618335.1| - 0.0094 15.6 1.5 0.85 9.3 0.0 2.9 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|20092260|ref|NP_618335.1| - 0.015 14.5 4.2 0.015 14.5 2.9 2.8 2 1 2 4 4 4 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|20092260|ref|NP_618335.1| - 0.021 14.5 3.1 8 6.2 1.2 3.5 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|20092260|ref|NP_618335.1| - 0.029 13.8 9.7 1 8.9 0.1 3.6 3 0 0 3 3 3 0 zinc-ribbon domain GFA PF04828.9 gi|20092260|ref|NP_618335.1| - 0.19 11.7 6.6 2.4 8.1 0.0 3.6 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme TF_Zn_Ribbon PF08271.7 gi|20092260|ref|NP_618335.1| - 0.38 10.1 3.7 4.7 6.6 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|20092260|ref|NP_618335.1| - 0.72 9.8 0.0 0.72 9.8 0.0 3.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF1610 PF07754.6 gi|20092260|ref|NP_618335.1| - 3.9 7.6 9.5 8.4 6.6 1.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-BED PF02892.10 gi|20092260|ref|NP_618335.1| - 6.9 6.5 8.4 4.4 7.1 1.1 2.6 2 0 0 2 2 2 0 BED zinc finger CbiA PF01656.18 gi|20092261|ref|NP_618336.1| - 1.9e-21 76.3 0.0 2.3e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|20092261|ref|NP_618336.1| - 4.5e-08 33.1 0.0 1.6e-06 28.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|20092261|ref|NP_618336.1| - 2.9e-06 27.0 0.0 4.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.10 gi|20092261|ref|NP_618336.1| - 4.9e-06 25.7 0.3 1.1e-05 24.6 0.2 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.17 gi|20092261|ref|NP_618336.1| - 5.9e-06 25.8 0.1 0.00012 21.5 0.1 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|20092261|ref|NP_618336.1| - 1.1e-05 26.1 0.0 2.8e-05 24.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain DUF87 PF01935.12 gi|20092261|ref|NP_618336.1| - 2.4e-05 24.2 0.1 4.9e-05 23.2 0.1 1.5 2 0 0 2 2 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|20092261|ref|NP_618336.1| - 3.1e-05 23.5 0.1 5e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|20092261|ref|NP_618336.1| - 3.2e-05 23.6 0.1 8.3e-05 22.3 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|20092261|ref|NP_618336.1| - 4e-05 22.9 0.0 7.2e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MipZ PF09140.6 gi|20092261|ref|NP_618336.1| - 0.00029 19.9 0.0 0.00084 18.4 0.0 1.7 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|20092261|ref|NP_618336.1| - 0.00046 19.6 0.0 0.0063 15.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|20092261|ref|NP_618336.1| - 0.00089 18.5 0.5 0.0037 16.4 0.0 2.1 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Zeta_toxin PF06414.7 gi|20092261|ref|NP_618336.1| - 0.0016 17.5 0.0 0.0031 16.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|20092261|ref|NP_618336.1| - 0.0021 18.3 0.3 0.0032 17.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|20092261|ref|NP_618336.1| - 0.0023 17.4 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain YhjQ PF06564.7 gi|20092261|ref|NP_618336.1| - 0.0034 16.7 0.0 0.045 13.1 0.0 2.0 2 0 0 2 2 2 1 YhjQ protein ATP_bind_1 PF03029.12 gi|20092261|ref|NP_618336.1| - 0.0068 15.9 0.1 0.031 13.8 0.0 2.0 3 0 0 3 3 2 1 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|20092261|ref|NP_618336.1| - 0.0081 15.6 0.0 0.036 13.5 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family ArgK PF03308.11 gi|20092261|ref|NP_618336.1| - 0.0081 14.9 0.2 0.017 13.8 0.0 1.5 2 0 0 2 2 2 1 ArgK protein KaiC PF06745.8 gi|20092261|ref|NP_618336.1| - 0.0084 15.2 0.0 0.019 14.1 0.0 1.6 2 0 0 2 2 2 1 KaiC Thymidylate_kin PF02223.12 gi|20092261|ref|NP_618336.1| - 0.0088 15.4 0.1 0.028 13.8 0.0 1.8 3 0 0 3 3 1 1 Thymidylate kinase AAA_16 PF13191.1 gi|20092261|ref|NP_618336.1| - 0.0089 16.0 0.0 0.021 14.7 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain Miro PF08477.8 gi|20092261|ref|NP_618336.1| - 0.0094 16.4 0.0 0.089 13.2 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein TrkA_N PF02254.13 gi|20092261|ref|NP_618336.1| - 0.011 15.7 0.0 0.15 12.0 0.0 2.4 2 1 0 2 2 2 0 TrkA-N domain T2SE PF00437.15 gi|20092261|ref|NP_618336.1| - 0.011 14.6 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Mur_ligase_M PF08245.7 gi|20092261|ref|NP_618336.1| - 0.012 15.6 0.0 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 Mur ligase middle domain ABC_tran PF00005.22 gi|20092261|ref|NP_618336.1| - 0.014 15.6 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|20092261|ref|NP_618336.1| - 0.021 14.7 0.0 4.1 7.3 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|20092261|ref|NP_618336.1| - 0.025 14.7 0.0 0.086 13.0 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.1 gi|20092261|ref|NP_618336.1| - 0.032 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|20092261|ref|NP_618336.1| - 0.035 12.7 0.1 0.18 10.4 0.1 1.9 2 0 0 2 2 2 0 G-protein alpha subunit AAA_29 PF13555.1 gi|20092261|ref|NP_618336.1| - 0.039 13.4 0.2 0.068 12.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.4 gi|20092261|ref|NP_618336.1| - 0.041 12.4 0.0 0.096 11.2 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_26 PF13500.1 gi|20092261|ref|NP_618336.1| - 0.054 13.0 0.3 1.8 8.0 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|20092261|ref|NP_618336.1| - 0.1 12.8 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|20092261|ref|NP_618336.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|20092261|ref|NP_618336.1| - 0.14 11.8 0.1 0.39 10.4 0.0 1.7 1 0 0 1 1 1 0 NTPase KAP_NTPase PF07693.9 gi|20092261|ref|NP_618336.1| - 0.16 10.9 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Peripla_BP_2 PF01497.13 gi|20092263|ref|NP_618338.1| - 7.9e-67 224.8 0.0 1.1e-66 224.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|20092264|ref|NP_618339.1| - 2.5e-88 295.9 32.9 3e-88 295.6 22.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|20092265|ref|NP_618340.1| - 1.1e-33 116.4 0.0 1.6e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092265|ref|NP_618340.1| - 6.9e-11 42.6 0.4 1.5e-05 25.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20092265|ref|NP_618340.1| - 5.2e-10 38.9 0.1 9.8e-05 21.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|20092265|ref|NP_618340.1| - 1.8e-07 30.6 1.1 1.1e-06 28.0 0.8 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20092265|ref|NP_618340.1| - 7.8e-06 26.3 0.1 1e-05 25.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|20092265|ref|NP_618340.1| - 0.00029 19.5 0.8 0.39 9.2 0.0 2.5 2 1 0 2 2 2 2 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|20092265|ref|NP_618340.1| - 0.0003 20.0 0.1 0.0005 19.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|20092265|ref|NP_618340.1| - 0.00042 19.7 0.0 0.00091 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20092265|ref|NP_618340.1| - 0.00089 19.4 1.1 0.02 15.0 0.8 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|20092265|ref|NP_618340.1| - 0.0036 16.4 0.1 0.027 13.5 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|20092265|ref|NP_618340.1| - 0.0081 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|20092265|ref|NP_618340.1| - 0.024 15.4 0.2 0.077 13.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|20092265|ref|NP_618340.1| - 0.027 14.6 0.1 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|20092265|ref|NP_618340.1| - 0.027 14.1 0.2 0.12 12.0 0.2 2.1 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|20092265|ref|NP_618340.1| - 0.037 13.7 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|20092265|ref|NP_618340.1| - 0.048 13.0 0.4 0.2 11.0 0.1 1.9 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|20092265|ref|NP_618340.1| - 0.05 13.0 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 MutS domain V AAA_14 PF13173.1 gi|20092265|ref|NP_618340.1| - 0.05 13.5 0.2 0.91 9.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|20092265|ref|NP_618340.1| - 0.053 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|20092265|ref|NP_618340.1| - 0.061 12.1 3.0 0.26 10.0 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.16 gi|20092265|ref|NP_618340.1| - 0.066 12.3 0.0 0.23 10.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|20092265|ref|NP_618340.1| - 0.08 12.8 0.1 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|20092265|ref|NP_618340.1| - 0.088 11.4 0.1 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RNA12 PF10443.4 gi|20092265|ref|NP_618340.1| - 0.088 11.2 1.6 0.1 11.0 0.1 1.7 2 0 0 2 2 2 0 RNA12 protein AAA_13 PF13166.1 gi|20092265|ref|NP_618340.1| - 0.1 11.0 0.0 1.2 7.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|20092265|ref|NP_618340.1| - 0.13 11.9 0.2 0.28 10.8 0.0 1.6 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|20092265|ref|NP_618340.1| - 0.15 12.0 0.7 0.27 11.1 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Methyltransf_11 PF08241.7 gi|20092266|ref|NP_618341.1| - 5.5e-17 62.0 0.0 9.2e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092266|ref|NP_618341.1| - 1.5e-16 60.3 0.0 2.8e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092266|ref|NP_618341.1| - 1.8e-15 57.0 0.0 2.7e-15 56.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092266|ref|NP_618341.1| - 8.5e-13 48.8 0.0 1.3e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092266|ref|NP_618341.1| - 2.3e-10 40.8 0.0 4.4e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092266|ref|NP_618341.1| - 3.6e-08 32.9 0.1 7.9e-08 31.8 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|20092266|ref|NP_618341.1| - 7.9e-08 32.5 0.0 1.7e-07 31.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20092266|ref|NP_618341.1| - 6.1e-06 25.4 0.0 9e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|20092266|ref|NP_618341.1| - 9.3e-06 25.6 0.0 2.9e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092266|ref|NP_618341.1| - 1.3e-05 24.4 0.0 2.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|20092266|ref|NP_618341.1| - 1.7e-05 24.2 0.0 2.1e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20092266|ref|NP_618341.1| - 2.6e-05 23.4 0.0 3.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|20092266|ref|NP_618341.1| - 8.3e-05 22.2 0.0 0.00021 20.8 0.0 1.7 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20092266|ref|NP_618341.1| - 0.00013 21.1 0.0 0.00018 20.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|20092266|ref|NP_618341.1| - 0.00093 18.3 0.0 0.0028 16.7 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase GidB PF02527.10 gi|20092266|ref|NP_618341.1| - 0.001 18.2 0.0 0.0034 16.5 0.0 1.8 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G FtsJ PF01728.14 gi|20092266|ref|NP_618341.1| - 0.0053 16.7 0.1 0.013 15.5 0.0 1.8 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|20092266|ref|NP_618341.1| - 0.0086 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|20092266|ref|NP_618341.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_9 PF08003.6 gi|20092266|ref|NP_618341.1| - 0.035 12.7 0.0 0.054 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) tRNA_U5-meth_tr PF05958.6 gi|20092266|ref|NP_618341.1| - 0.056 12.1 0.0 0.08 11.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase SBP_bac_5 PF00496.17 gi|20092267|ref|NP_618342.1| - 3.4e-92 309.1 0.8 4.1e-92 308.8 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_3 PF00497.15 gi|20092267|ref|NP_618342.1| - 0.0072 15.6 0.2 0.18 11.0 0.0 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Internalin_N PF12354.3 gi|20092267|ref|NP_618342.1| - 0.15 11.6 0.4 0.27 10.8 0.2 1.4 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal ABC_tran PF00005.22 gi|20092268|ref|NP_618343.1| - 2.1e-32 112.2 0.1 3.8e-32 111.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092268|ref|NP_618343.1| - 1.7e-08 34.7 0.2 2.2e-06 27.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|20092268|ref|NP_618343.1| - 8.3e-08 32.4 4.4 1.6e-07 31.5 3.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_13 PF13166.1 gi|20092268|ref|NP_618343.1| - 0.0023 16.4 1.2 0.02 13.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092268|ref|NP_618343.1| - 0.0087 16.2 1.8 0.1 12.7 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20092268|ref|NP_618343.1| - 0.013 14.9 0.9 0.026 14.0 0.6 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20092268|ref|NP_618343.1| - 0.015 14.5 1.9 0.084 12.0 1.2 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20092268|ref|NP_618343.1| - 0.021 14.8 0.3 0.029 14.3 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|20092268|ref|NP_618343.1| - 0.025 14.8 0.2 0.055 13.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|20092268|ref|NP_618343.1| - 0.075 12.2 0.1 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 G-alpha PF00503.15 gi|20092268|ref|NP_618343.1| - 0.11 11.1 0.6 0.2 10.3 0.4 1.5 1 1 0 1 1 1 0 G-protein alpha subunit ABC_tran PF00005.22 gi|20092269|ref|NP_618344.1| - 8.5e-23 81.1 0.0 1.1e-22 80.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092269|ref|NP_618344.1| - 1.5e-08 35.0 0.1 2.5e-06 27.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20092269|ref|NP_618344.1| - 2.5e-05 23.6 0.2 9e-05 21.7 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092269|ref|NP_618344.1| - 0.00018 20.9 0.2 0.00038 19.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|20092269|ref|NP_618344.1| - 0.00021 20.7 0.1 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain oligo_HPY PF08352.7 gi|20092269|ref|NP_618344.1| - 0.00033 20.9 0.0 0.00058 20.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_15 PF13175.1 gi|20092269|ref|NP_618344.1| - 0.00049 19.2 0.1 0.75 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|20092269|ref|NP_618344.1| - 0.0048 17.0 0.7 0.023 14.8 0.5 2.2 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|20092269|ref|NP_618344.1| - 0.0092 15.5 0.2 0.039 13.4 0.2 1.9 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|20092269|ref|NP_618344.1| - 0.01 16.0 0.3 0.093 12.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|20092269|ref|NP_618344.1| - 0.011 15.2 0.4 0.14 11.5 0.1 2.1 1 1 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|20092269|ref|NP_618344.1| - 0.011 15.7 0.1 0.016 15.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|20092269|ref|NP_618344.1| - 0.022 13.9 0.1 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|20092269|ref|NP_618344.1| - 0.1 12.0 0.1 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein TFIIIC_sub6 PF10419.4 gi|20092269|ref|NP_618344.1| - 0.11 11.9 0.1 0.22 10.9 0.1 1.5 1 0 0 1 1 1 0 TFIIIC subunit AAA_23 PF13476.1 gi|20092269|ref|NP_618344.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|20092270|ref|NP_618345.1| - 3.5e-29 101.6 11.4 3.5e-29 101.6 7.9 2.3 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20092270|ref|NP_618345.1| - 6.7e-08 31.7 1.1 6.7e-08 31.7 0.7 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C LMBR1 PF04791.11 gi|20092270|ref|NP_618345.1| - 0.012 14.2 1.4 0.018 13.6 0.2 1.8 2 0 0 2 2 2 0 LMBR1-like membrane protein MadM PF03818.8 gi|20092270|ref|NP_618345.1| - 0.54 9.8 4.7 2.2 7.9 0.2 2.7 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit ABC2_membrane_4 PF12730.2 gi|20092270|ref|NP_618345.1| - 9.7 5.2 25.6 6 5.9 11.9 2.9 2 1 0 2 2 2 0 ABC-2 family transporter protein BPD_transp_1 PF00528.17 gi|20092271|ref|NP_618346.1| - 3.6e-43 147.2 6.1 3.6e-43 147.2 4.2 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component TOM13 PF08219.6 gi|20092271|ref|NP_618346.1| - 0.025 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Outer membrane protein TOM13 Methyltransf_11 PF08241.7 gi|20092272|ref|NP_618347.1| - 1.6e-24 86.2 0.0 2.6e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092272|ref|NP_618347.1| - 1.6e-19 69.9 0.0 2.2e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092272|ref|NP_618347.1| - 7.9e-17 61.4 0.1 1.1e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092272|ref|NP_618347.1| - 5.1e-14 52.4 0.0 8.2e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092272|ref|NP_618347.1| - 1.2e-13 51.6 0.0 2.2e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092272|ref|NP_618347.1| - 2.8e-13 49.5 0.0 3.6e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|20092272|ref|NP_618347.1| - 2.2e-12 47.3 0.0 3.7e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092272|ref|NP_618347.1| - 3.5e-11 43.1 0.0 8.1e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|20092272|ref|NP_618347.1| - 2.4e-07 29.5 0.0 3e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|20092272|ref|NP_618347.1| - 9.2e-06 24.9 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|20092272|ref|NP_618347.1| - 1.3e-05 24.6 0.0 2.3e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|20092272|ref|NP_618347.1| - 4.9e-05 22.8 0.0 7.3e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|20092272|ref|NP_618347.1| - 0.0027 16.7 0.0 0.0042 16.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.9 gi|20092272|ref|NP_618347.1| - 0.0056 15.8 0.0 0.0074 15.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB DREV PF05219.7 gi|20092272|ref|NP_618347.1| - 0.0072 15.2 0.0 0.0096 14.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase MetW PF07021.7 gi|20092272|ref|NP_618347.1| - 0.016 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|20092272|ref|NP_618347.1| - 0.017 14.7 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|20092272|ref|NP_618347.1| - 0.027 14.1 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.10 gi|20092272|ref|NP_618347.1| - 0.03 13.4 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G UPF0020 PF01170.13 gi|20092272|ref|NP_618347.1| - 0.052 13.1 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|20092272|ref|NP_618347.1| - 0.055 13.0 0.0 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.13 gi|20092272|ref|NP_618347.1| - 0.084 12.1 0.0 0.28 10.4 0.0 1.9 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain SBP_bac_5 PF00496.17 gi|20092274|ref|NP_618349.1| - 1.9e-93 313.3 0.0 2.4e-93 312.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|20092275|ref|NP_618350.1| - 2.3e-44 151.1 12.8 2.3e-44 151.1 8.9 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3693 PF12472.3 gi|20092275|ref|NP_618350.1| - 0.0071 15.9 2.2 0.01 15.4 0.1 2.4 3 0 0 3 3 3 1 Phage related protein BPD_transp_1 PF00528.17 gi|20092276|ref|NP_618351.1| - 5.1e-28 97.8 7.8 5.1e-28 97.8 5.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20092276|ref|NP_618351.1| - 5.8e-10 38.3 0.1 5.8e-10 38.3 0.0 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF1158 PF06643.6 gi|20092276|ref|NP_618351.1| - 0.099 12.9 0.3 0.35 11.2 0.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1158) ABC_tran PF00005.22 gi|20092277|ref|NP_618352.1| - 4.1e-24 85.4 0.0 6.1e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20092277|ref|NP_618352.1| - 1.4e-16 60.6 0.1 2.5e-16 59.7 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20092277|ref|NP_618352.1| - 7.3e-09 35.9 0.5 0.00095 19.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|20092277|ref|NP_618352.1| - 0.00045 20.3 0.3 0.0018 18.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20092277|ref|NP_618352.1| - 0.0017 17.6 0.0 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092277|ref|NP_618352.1| - 0.0025 17.3 0.1 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20092277|ref|NP_618352.1| - 0.0041 17.4 0.1 0.0055 17.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20092277|ref|NP_618352.1| - 0.0073 16.3 0.1 0.039 13.9 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain UPF0079 PF02367.12 gi|20092277|ref|NP_618352.1| - 0.013 15.1 0.3 0.023 14.3 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|20092277|ref|NP_618352.1| - 0.014 15.1 0.1 0.03 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|20092277|ref|NP_618352.1| - 0.016 14.9 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|20092277|ref|NP_618352.1| - 0.043 12.6 0.2 0.066 12.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|20092277|ref|NP_618352.1| - 0.044 13.9 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|20092277|ref|NP_618352.1| - 0.045 14.0 0.1 0.089 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|20092277|ref|NP_618352.1| - 0.082 12.3 0.1 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation T2SE PF00437.15 gi|20092277|ref|NP_618352.1| - 0.097 11.5 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.7 gi|20092277|ref|NP_618352.1| - 0.16 11.5 0.8 0.41 10.2 0.2 1.8 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|20092278|ref|NP_618353.1| - 3.5e-31 108.3 0.0 4.6e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092278|ref|NP_618353.1| - 2e-09 37.8 0.4 7.1e-06 26.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20092278|ref|NP_618353.1| - 1.4e-06 27.7 0.0 2.2e-06 27.0 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20092278|ref|NP_618353.1| - 9.6e-05 22.5 0.2 0.00058 20.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20092278|ref|NP_618353.1| - 0.00048 19.5 0.1 0.00093 18.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20092278|ref|NP_618353.1| - 0.0014 18.6 1.4 0.0034 17.3 1.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|20092278|ref|NP_618353.1| - 0.0068 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|20092278|ref|NP_618353.1| - 0.03 13.3 0.1 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|20092278|ref|NP_618353.1| - 0.045 13.1 0.0 1.2 8.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|20092278|ref|NP_618353.1| - 0.045 14.0 0.8 0.11 12.7 0.3 1.8 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|20092278|ref|NP_618353.1| - 0.045 12.4 0.0 0.056 12.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.17 gi|20092278|ref|NP_618353.1| - 0.057 12.2 0.1 0.12 11.2 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|20092278|ref|NP_618353.1| - 0.062 13.0 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|20092278|ref|NP_618353.1| - 0.092 12.6 0.5 0.2 11.5 0.4 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20092278|ref|NP_618353.1| - 0.13 11.9 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|20092278|ref|NP_618353.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain Methyltransf_2 PF00891.13 gi|20092279|ref|NP_618354.1| - 1.3e-09 37.6 0.0 2.1e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|20092279|ref|NP_618354.1| - 7.1e-08 33.0 0.0 2e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092279|ref|NP_618354.1| - 4.8e-05 22.9 0.0 7.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092279|ref|NP_618354.1| - 0.00046 20.6 0.0 0.0021 18.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|20092279|ref|NP_618354.1| - 0.00051 19.6 0.0 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|20092279|ref|NP_618354.1| - 0.00067 19.0 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain HTH_IclR PF09339.5 gi|20092279|ref|NP_618354.1| - 0.0049 16.4 0.1 0.014 15.0 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain TehB PF03848.9 gi|20092279|ref|NP_618354.1| - 0.019 14.1 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB PrmA PF06325.8 gi|20092279|ref|NP_618354.1| - 0.066 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|20092279|ref|NP_618354.1| - 0.13 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.13 gi|20092280|ref|NP_618355.1| - 1.4e-10 40.8 0.0 1.9e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|20092280|ref|NP_618355.1| - 1.3e-06 28.9 0.0 2.6e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092280|ref|NP_618355.1| - 0.0035 16.9 0.0 0.0059 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20092280|ref|NP_618355.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|20092280|ref|NP_618355.1| - 0.019 15.4 0.0 0.046 14.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092280|ref|NP_618355.1| - 0.019 14.9 0.0 0.061 13.3 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain MTS PF05175.9 gi|20092280|ref|NP_618355.1| - 0.025 13.9 0.0 0.045 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Fe_dep_repress PF01325.14 gi|20092281|ref|NP_618356.1| - 1.9e-18 66.1 0.4 2.9e-18 65.5 0.3 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|20092281|ref|NP_618356.1| - 7.9e-18 63.9 0.6 1.4e-17 63.0 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain LexA_DNA_bind PF01726.11 gi|20092281|ref|NP_618356.1| - 0.00012 21.5 0.0 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.1 gi|20092281|ref|NP_618356.1| - 0.00022 20.9 1.4 0.00041 20.0 1.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|20092281|ref|NP_618356.1| - 0.00033 20.2 0.0 0.00061 19.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|20092281|ref|NP_618356.1| - 0.00037 20.1 0.0 0.00081 19.0 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|20092281|ref|NP_618356.1| - 0.0005 19.6 0.0 0.00092 18.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20092281|ref|NP_618356.1| - 0.00067 18.9 0.0 0.0012 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|20092281|ref|NP_618356.1| - 0.002 17.8 0.2 0.0073 16.0 0.2 1.9 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Penicillinase_R PF03965.11 gi|20092281|ref|NP_618356.1| - 0.0036 17.3 0.0 0.0085 16.1 0.0 1.8 1 1 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|20092281|ref|NP_618356.1| - 0.0053 16.4 0.1 0.01 15.5 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|20092281|ref|NP_618356.1| - 0.0053 16.8 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.5 gi|20092281|ref|NP_618356.1| - 0.0058 16.3 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_40 PF14493.1 gi|20092281|ref|NP_618356.1| - 0.0075 16.4 0.1 0.16 12.2 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain SWIRM PF04433.12 gi|20092281|ref|NP_618356.1| - 0.013 15.6 0.0 0.11 12.6 0.0 2.1 2 0 0 2 2 2 0 SWIRM domain HTH_IclR PF09339.5 gi|20092281|ref|NP_618356.1| - 0.015 14.8 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mrr_N PF14338.1 gi|20092281|ref|NP_618356.1| - 0.016 15.3 0.3 0.27 11.3 0.0 2.3 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_27 PF13463.1 gi|20092281|ref|NP_618356.1| - 0.02 15.1 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Topoisom_bac PF01131.15 gi|20092281|ref|NP_618356.1| - 0.04 12.7 0.1 0.052 12.3 0.1 1.3 1 0 0 1 1 1 0 DNA topoisomerase HTH_DeoR PF08220.7 gi|20092281|ref|NP_618356.1| - 0.048 13.2 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20092281|ref|NP_618356.1| - 0.055 13.2 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_terminase PF10668.4 gi|20092281|ref|NP_618356.1| - 0.089 12.5 0.0 0.25 11.1 0.0 1.8 1 0 0 1 1 1 0 Phage terminase small subunit HTH_6 PF01418.12 gi|20092281|ref|NP_618356.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Glug PF07581.7 gi|20092283|ref|NP_618358.1| - 1.9e-130 416.7 462.6 2e-05 24.4 1.3 55.6 57 0 0 57 57 57 46 The GLUG motif CbiX PF01903.12 gi|20092283|ref|NP_618358.1| - 4.7e-113 370.5 9.8 9.1e-23 80.3 0.1 7.5 7 0 0 7 7 7 7 CbiX CbiK PF06180.6 gi|20092283|ref|NP_618358.1| - 1.5e-17 63.5 6.9 7e-07 28.6 0.2 3.9 3 1 0 3 3 3 3 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|20092283|ref|NP_618358.1| - 4.5e-10 39.0 0.0 0.017 14.1 0.0 4.5 4 2 0 4 4 4 3 Ferrochelatase Phi-29_GP3 PF05435.6 gi|20092283|ref|NP_618358.1| - 0.038 13.2 1.3 28 3.7 0.0 4.4 4 0 0 4 4 4 0 Phi-29 DNA terminal protein GP3 Peptidase_M26_N PF05342.9 gi|20092283|ref|NP_618358.1| - 1.3 7.9 1.2 62 2.4 0.0 3.4 3 0 0 3 3 3 0 M26 IgA1-specific Metallo-endopeptidase N-terminal region Oxysterol_BP PF01237.13 gi|20092283|ref|NP_618358.1| - 8.9 4.6 0.0 16 3.8 0.0 1.3 1 0 0 1 1 1 0 Oxysterol-binding protein LCM PF04072.9 gi|20092284|ref|NP_618359.1| - 4.9e-44 150.0 0.1 6e-44 149.7 0.1 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase HHH_3 PF12836.2 gi|20092285|ref|NP_618360.1| - 0.014 15.3 0.1 0.021 14.7 0.1 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif EB1 PF03271.12 gi|20092285|ref|NP_618360.1| - 0.058 13.4 0.2 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 EB1-like C-terminal motif NAC PF01849.13 gi|20092285|ref|NP_618360.1| - 0.1 12.1 0.2 0.32 10.5 0.0 1.7 1 1 1 2 2 2 0 NAC domain FeoC PF09012.5 gi|20092286|ref|NP_618361.1| - 1.2e-18 66.5 9.6 4.1e-18 64.8 6.5 1.9 1 1 0 1 1 1 1 FeoC like transcriptional regulator MarR_2 PF12802.2 gi|20092286|ref|NP_618361.1| - 0.0084 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Sigma70_r1_1 PF03979.9 gi|20092286|ref|NP_618361.1| - 0.013 15.4 0.1 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 DUF2250 PF10007.4 gi|20092286|ref|NP_618361.1| - 0.03 14.2 0.3 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) RPA_C PF08784.6 gi|20092286|ref|NP_618361.1| - 0.032 14.6 0.1 0.053 13.9 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_45 PF14947.1 gi|20092286|ref|NP_618361.1| - 0.033 14.0 0.8 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix TrmB PF01978.14 gi|20092286|ref|NP_618361.1| - 0.07 12.8 0.0 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|20092286|ref|NP_618361.1| - 0.089 12.3 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain HTH_24 PF13412.1 gi|20092286|ref|NP_618361.1| - 0.09 12.1 0.1 0.22 10.9 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Yip1 PF04893.12 gi|20092287|ref|NP_618362.1| - 0.25 10.8 14.6 0.48 9.9 10.1 1.4 1 1 0 1 1 1 0 Yip1 domain TctB PF07331.6 gi|20092287|ref|NP_618362.1| - 2.5 7.7 12.7 1.3 8.7 5.4 2.5 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF308 PF03729.8 gi|20092287|ref|NP_618362.1| - 6.1 6.9 14.8 2.2 8.3 2.2 2.8 1 1 2 3 3 3 0 Short repeat of unknown function (DUF308) DUF3185 PF11381.3 gi|20092287|ref|NP_618362.1| - 9.6 6.0 9.5 0.78 9.5 1.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) FeoB_N PF02421.13 gi|20092288|ref|NP_618363.1| - 6.6e-65 217.1 0.4 1e-64 216.5 0.3 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|20092288|ref|NP_618363.1| - 1.3e-49 166.6 13.8 1.2e-31 108.8 1.5 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|20092288|ref|NP_618363.1| - 1e-21 76.0 0.4 1e-21 76.0 0.3 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|20092288|ref|NP_618363.1| - 2.6e-15 56.3 0.1 4.9e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|20092288|ref|NP_618363.1| - 0.00072 18.8 0.0 0.0013 18.0 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|20092288|ref|NP_618363.1| - 0.039 13.0 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 AIG1 family GTP_EFTU PF00009.22 gi|20092288|ref|NP_618363.1| - 0.048 13.0 0.2 3.7 6.9 0.2 3.0 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|20092288|ref|NP_618363.1| - 0.13 11.0 0.1 12 4.5 0.0 2.2 2 0 0 2 2 2 0 ArgK protein FeoA PF04023.9 gi|20092289|ref|NP_618364.1| - 1.1e-18 66.9 0.1 1.2e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.9 gi|20092290|ref|NP_618365.1| - 1.7e-16 59.9 0.2 1.9e-16 59.7 0.1 1.0 1 0 0 1 1 1 1 FeoA domain HisKA_2 PF07568.7 gi|20092292|ref|NP_618367.1| - 2.5e-34 116.9 1.1 6.4e-34 115.6 0.8 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|20092292|ref|NP_618367.1| - 1.5e-21 76.2 0.0 1.1e-20 73.4 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|20092292|ref|NP_618367.1| - 1.3e-08 35.1 0.0 4.4e-08 33.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|20092292|ref|NP_618367.1| - 1.6e-08 34.2 0.1 3.2e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|20092292|ref|NP_618367.1| - 7.6e-05 23.0 0.1 0.00015 22.1 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS PF00989.19 gi|20092292|ref|NP_618367.1| - 8.1e-05 22.3 0.0 0.00018 21.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|20092292|ref|NP_618367.1| - 0.0012 18.8 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold DUF4173 PF13777.1 gi|20092292|ref|NP_618367.1| - 0.0034 16.6 1.4 0.0034 16.6 1.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4173) Pkip-1 PF06878.6 gi|20092292|ref|NP_618367.1| - 0.032 14.1 1.0 0.056 13.3 0.7 1.4 1 0 0 1 1 1 0 Pkip-1 protein HATPase_c_2 PF13581.1 gi|20092292|ref|NP_618367.1| - 0.11 12.3 0.0 0.49 10.1 0.0 2.0 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain Radical_SAM PF04055.16 gi|20092293|ref|NP_618368.1| - 2.9e-16 60.0 0.0 6.6e-16 58.9 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20092293|ref|NP_618368.1| - 3.5e-05 23.9 0.0 0.0001 22.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.2 gi|20092293|ref|NP_618368.1| - 0.0012 18.5 0.1 0.0012 18.5 0.1 2.9 3 0 0 3 3 3 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20092293|ref|NP_618368.1| - 0.072 12.5 0.2 0.072 12.5 0.1 3.6 4 0 0 4 4 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20092293|ref|NP_618368.1| - 0.086 12.8 7.2 4.8 7.2 0.1 3.6 2 1 1 3 3 3 0 Zinc ribbon domain UPF0167 PF03691.9 gi|20092293|ref|NP_618368.1| - 0.1 11.9 4.9 0.33 10.3 0.0 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0167) Hydrolase_like PF13242.1 gi|20092293|ref|NP_618368.1| - 0.11 12.1 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 HAD-hyrolase-like zf-ribbon_3 PF13248.1 gi|20092293|ref|NP_618368.1| - 0.13 11.4 14.7 0.13 11.4 0.6 3.1 3 1 0 4 4 4 0 zinc-ribbon domain YhfH PF14149.1 gi|20092293|ref|NP_618368.1| - 0.17 11.6 0.2 0.17 11.6 0.1 3.1 4 0 0 4 4 3 0 YhfH-like protein Fer4_14 PF13394.1 gi|20092293|ref|NP_618368.1| - 0.2 11.6 0.0 0.2 11.6 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain GFA PF04828.9 gi|20092293|ref|NP_618368.1| - 0.28 11.1 6.3 0.65 9.9 0.0 3.3 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme TF_Zn_Ribbon PF08271.7 gi|20092293|ref|NP_618368.1| - 0.44 9.8 5.5 1.4 8.2 0.1 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|20092293|ref|NP_618368.1| - 0.9 9.2 11.2 3.5 7.4 0.0 3.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-LITAF-like PF10601.4 gi|20092293|ref|NP_618368.1| - 1.2 9.0 5.7 17 5.3 0.4 3.3 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|20092293|ref|NP_618368.1| - 3.1 7.5 8.7 3.9 7.1 0.1 3.5 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-dskA_traR PF01258.12 gi|20092293|ref|NP_618368.1| - 5.2 6.9 8.6 0.58 9.9 0.5 2.9 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger NUDIX PF00293.23 gi|20092295|ref|NP_618370.1| - 2e-09 37.1 0.0 2.8e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain MttA_Hcf106 PF02416.11 gi|20092296|ref|NP_618371.1| - 4.3e-17 60.9 0.3 6.3e-17 60.4 0.2 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family MttA_Hcf106 PF02416.11 gi|20092297|ref|NP_618372.1| - 1.9e-13 49.2 1.6 3.6e-13 48.3 1.1 1.6 1 1 0 1 1 1 1 mttA/Hcf106 family TatC PF00902.13 gi|20092298|ref|NP_618373.1| - 1.9e-50 171.2 22.4 2.2e-50 171.0 15.5 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TatC PF00902.13 gi|20092299|ref|NP_618374.1| - 5.5e-44 150.1 23.6 6.7e-44 149.8 16.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) EamA PF00892.15 gi|20092300|ref|NP_618375.1| - 1.5e-26 92.8 42.3 1.8e-17 63.5 10.4 2.8 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|20092300|ref|NP_618375.1| - 9.8e-09 35.4 29.2 0.00062 19.9 5.4 3.3 2 2 0 2 2 2 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|20092300|ref|NP_618375.1| - 0.019 14.7 12.5 0.1 12.4 0.8 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 DUF4191 PF13829.1 gi|20092300|ref|NP_618375.1| - 0.072 12.2 0.2 0.072 12.2 0.2 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4191) TPT PF03151.11 gi|20092300|ref|NP_618375.1| - 0.11 12.1 24.9 0.75 9.4 5.3 2.8 2 2 0 2 2 2 0 Triose-phosphate Transporter family DUF997 PF06196.7 gi|20092300|ref|NP_618375.1| - 0.12 11.9 3.6 0.53 9.8 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF997) DUF4011 PF13195.1 gi|20092301|ref|NP_618376.1| - 8e-47 159.4 0.7 4.4e-46 157.0 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4011) DUF3320 PF11784.3 gi|20092301|ref|NP_618376.1| - 2.3e-16 59.0 0.7 5.3e-16 57.8 0.5 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3320) AAA_11 PF13086.1 gi|20092301|ref|NP_618376.1| - 5.4e-16 58.8 0.0 2.6e-08 33.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|20092301|ref|NP_618376.1| - 8.1e-13 48.1 0.0 2.5e-12 46.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|20092301|ref|NP_618376.1| - 3.5e-12 45.8 0.1 7.7e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|20092301|ref|NP_618376.1| - 1.9e-07 30.8 0.2 0.00084 18.9 0.1 2.6 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|20092301|ref|NP_618376.1| - 1e-05 24.7 0.1 0.036 13.0 0.0 3.2 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|20092301|ref|NP_618376.1| - 0.0014 18.1 0.0 0.43 10.0 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|20092301|ref|NP_618376.1| - 0.0065 15.8 0.0 0.016 14.5 0.0 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.9 gi|20092301|ref|NP_618376.1| - 0.0079 15.8 0.0 0.061 12.9 0.0 2.4 3 0 0 3 3 3 1 Helicase DUF559 PF04480.7 gi|20092301|ref|NP_618376.1| - 0.0092 15.6 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF559) RAP PF08373.5 gi|20092301|ref|NP_618376.1| - 0.026 14.2 0.1 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 RAP domain ResIII PF04851.10 gi|20092301|ref|NP_618376.1| - 0.035 13.9 0.0 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF4439 PF14530.1 gi|20092301|ref|NP_618376.1| - 0.063 13.7 0.0 0.87 10.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) GvpD PF07088.6 gi|20092301|ref|NP_618376.1| - 0.067 11.5 0.0 0.24 9.6 0.0 1.7 2 0 0 2 2 2 0 GvpD gas vesicle protein AAA PF00004.24 gi|20092301|ref|NP_618376.1| - 0.079 13.1 0.1 2.8 8.1 0.0 3.2 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|20092301|ref|NP_618376.1| - 0.079 12.6 0.0 0.29 10.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|20092301|ref|NP_618376.1| - 0.085 12.2 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|20092301|ref|NP_618376.1| - 0.095 12.8 0.0 2 8.5 0.0 2.9 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|20092301|ref|NP_618376.1| - 0.16 11.1 0.1 18 4.4 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein PNP_UDP_1 PF01048.15 gi|20092302|ref|NP_618377.1| - 4.6e-12 45.4 0.0 6.1e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily MULE PF10551.4 gi|20092303|ref|NP_618378.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20092303|ref|NP_618378.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20092303|ref|NP_618378.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20092303|ref|NP_618378.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20092303|ref|NP_618378.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20092303|ref|NP_618378.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20092303|ref|NP_618378.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20092303|ref|NP_618378.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger HNH PF01844.18 gi|20092304|ref|NP_618379.1| - 1.7e-11 43.7 3.9 3.3e-11 42.8 2.7 1.5 1 0 0 1 1 1 1 HNH endonuclease DUF287 PF03384.9 gi|20092304|ref|NP_618379.1| - 0.033 14.3 0.1 1.1 9.5 0.0 2.5 2 0 0 2 2 2 0 Drosophila protein of unknown function, DUF287 ZF-HD_dimer PF04770.7 gi|20092304|ref|NP_618379.1| - 0.34 10.9 8.3 2 8.5 5.8 2.0 1 1 0 1 1 1 0 ZF-HD protein dimerisation region DUF164 PF02591.10 gi|20092304|ref|NP_618379.1| - 0.5 10.2 4.6 2.7 7.9 0.2 2.4 2 0 0 2 2 2 0 Putative zinc ribbon domain TPR_11 PF13414.1 gi|20092305|ref|NP_618380.1| - 2.4e-54 180.8 14.3 1.5e-11 43.7 0.2 5.7 2 1 1 6 6 6 5 TPR repeat TPR_17 PF13431.1 gi|20092305|ref|NP_618380.1| - 7.9e-52 169.1 6.2 7.1e-06 25.8 0.1 9.8 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092305|ref|NP_618380.1| - 5e-51 166.5 13.3 3.1e-05 23.5 0.1 9.4 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20092305|ref|NP_618380.1| - 1.3e-44 148.0 10.4 1.4e-05 24.4 0.0 9.9 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092305|ref|NP_618380.1| - 8.9e-41 134.6 11.3 0.00022 20.7 0.0 10.0 9 1 1 10 10 10 9 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092305|ref|NP_618380.1| - 6.4e-40 135.0 3.3 6.2e-08 33.1 0.0 5.3 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092305|ref|NP_618380.1| - 2.6e-38 129.8 14.9 4.7e-09 36.0 0.3 7.0 1 1 7 8 8 8 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092305|ref|NP_618380.1| - 2.1e-30 104.8 3.9 3.3e-06 27.3 0.0 6.1 3 1 4 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092305|ref|NP_618380.1| - 4.5e-29 98.2 6.2 0.0002 21.6 0.0 9.1 1 1 8 9 9 9 7 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092305|ref|NP_618380.1| - 3.7e-26 88.8 6.3 0.0055 16.4 0.0 9.8 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20092305|ref|NP_618380.1| - 2.4e-17 62.2 20.8 0.016 15.1 0.0 8.9 9 0 0 9 9 9 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20092305|ref|NP_618380.1| - 4.1e-17 61.8 3.6 0.00024 20.8 0.1 6.6 2 2 6 8 8 8 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092305|ref|NP_618380.1| - 4.7e-14 52.2 8.4 0.00022 21.2 0.1 5.0 1 1 5 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|20092305|ref|NP_618380.1| - 4.9e-13 48.5 4.7 0.14 12.6 0.0 8.3 9 0 0 9 9 9 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20092305|ref|NP_618380.1| - 1.1e-12 47.0 0.0 2.8 8.6 0.1 8.5 10 0 0 10 10 9 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20092305|ref|NP_618380.1| - 2.2e-12 46.6 0.1 0.00025 20.1 0.0 4.0 1 1 0 3 3 3 2 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|20092305|ref|NP_618380.1| - 5.5e-08 32.3 0.4 0.27 10.3 0.0 4.4 2 1 1 5 5 5 2 Coatomer epsilon subunit NARP1 PF12569.3 gi|20092305|ref|NP_618380.1| - 4.9e-07 28.8 5.4 0.17 10.6 0.3 4.5 1 1 4 5 5 5 2 NMDA receptor-regulated protein 1 TPR_20 PF14561.1 gi|20092305|ref|NP_618380.1| - 1.6e-06 28.1 2.2 0.76 9.9 0.0 5.2 3 1 1 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20092305|ref|NP_618380.1| - 0.00013 21.8 3.3 13 5.6 0.0 6.6 2 2 3 7 7 7 0 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|20092305|ref|NP_618380.1| - 0.015 15.5 8.2 7 6.9 0.1 3.9 2 2 1 3 3 3 0 Bacterial transcriptional activator domain PvlArgDC PF01862.11 gi|20092306|ref|NP_618381.1| - 1.1e-66 223.5 0.1 1.2e-66 223.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DICT PF10069.4 gi|20092306|ref|NP_618381.1| - 0.14 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Sensory domain found in DIguanylate Cyclases & Two-component systems Hydantoinase_A PF01968.13 gi|20092307|ref|NP_618382.1| - 1.2e-75 254.2 0.1 7e-75 251.8 0.0 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20092307|ref|NP_618382.1| - 6.8e-44 149.4 0.9 1.2e-40 138.8 0.1 2.6 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20092307|ref|NP_618382.1| - 6.3e-05 21.4 1.3 0.058 11.7 0.0 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20092307|ref|NP_618382.1| - 0.0075 15.5 0.0 0.89 8.7 0.0 2.5 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Sda PF08970.5 gi|20092307|ref|NP_618382.1| - 0.053 13.0 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Sporulation inhibitor A Actin PF00022.14 gi|20092307|ref|NP_618382.1| - 0.13 10.7 0.0 0.24 9.7 0.0 1.4 1 0 0 1 1 1 0 Actin DDR PF08841.5 gi|20092307|ref|NP_618382.1| - 0.13 11.1 0.1 0.26 10.0 0.0 1.5 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Hydantoinase_A PF01968.13 gi|20092308|ref|NP_618383.1| - 2.2e-83 279.6 0.3 2.7e-82 276.1 0.0 2.5 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20092308|ref|NP_618383.1| - 1.6e-45 154.7 0.3 4.3e-42 143.5 0.1 2.6 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20092308|ref|NP_618383.1| - 4.4e-05 21.9 0.4 0.17 10.1 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20092308|ref|NP_618383.1| - 0.018 14.3 0.0 3.5 6.8 0.0 3.0 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Sda PF08970.5 gi|20092308|ref|NP_618383.1| - 0.11 12.0 0.0 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 Sporulation inhibitor A Rapamycin_bind PF08771.6 gi|20092309|ref|NP_618384.1| - 0.0038 17.2 0.1 0.0043 17.1 0.1 1.2 1 0 0 1 1 1 1 Rapamycin binding domain Plasmid_stabil PF05016.9 gi|20092310|ref|NP_618385.1| - 2.5e-07 31.0 0.1 2.7e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF45 PF01863.12 gi|20092311|ref|NP_618386.1| - 2.4e-60 203.8 0.1 2.8e-60 203.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|20092311|ref|NP_618386.1| - 6.8e-05 22.8 0.1 0.0001 22.2 0.1 1.2 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|20092311|ref|NP_618386.1| - 0.0029 17.2 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 SprT-like family DDE_Tnp_1 PF01609.16 gi|20092312|ref|NP_618387.1| - 1.8e-10 40.7 0.0 5.7e-10 39.0 0.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF3040 PF11239.3 gi|20092313|ref|NP_618388.1| - 0.022 14.8 0.8 0.032 14.2 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2207 PF09972.4 gi|20092313|ref|NP_618388.1| - 0.026 13.1 0.8 0.032 12.8 0.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CD20 PF04103.10 gi|20092313|ref|NP_618388.1| - 0.072 13.0 2.0 0.15 11.9 1.4 1.5 1 0 0 1 1 1 0 CD20-like family RseC_MucC PF04246.7 gi|20092313|ref|NP_618388.1| - 0.15 11.6 1.1 0.24 10.9 0.7 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF308 PF03729.8 gi|20092313|ref|NP_618388.1| - 0.21 11.6 8.8 0.34 10.9 6.1 1.2 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF4064 PF13273.1 gi|20092313|ref|NP_618388.1| - 0.48 10.5 7.1 0.97 9.5 4.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DDE_Tnp_1_6 PF13751.1 gi|20092314|ref|NP_618389.1| - 3e-17 62.7 0.3 3e-17 62.7 0.2 1.5 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092314|ref|NP_618389.1| - 0.00087 18.8 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain IstB_IS21 PF01695.12 gi|20092315|ref|NP_618390.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20092315|ref|NP_618390.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20092315|ref|NP_618390.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20092315|ref|NP_618390.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20092315|ref|NP_618390.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20092315|ref|NP_618390.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20092315|ref|NP_618390.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20092315|ref|NP_618390.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20092315|ref|NP_618390.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092315|ref|NP_618390.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20092315|ref|NP_618390.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20092315|ref|NP_618390.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20092315|ref|NP_618390.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20092315|ref|NP_618390.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20092315|ref|NP_618390.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20092315|ref|NP_618390.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20092315|ref|NP_618390.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20092315|ref|NP_618390.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20092315|ref|NP_618390.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20092315|ref|NP_618390.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20092315|ref|NP_618390.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20092315|ref|NP_618390.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20092315|ref|NP_618390.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20092315|ref|NP_618390.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20092315|ref|NP_618390.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20092315|ref|NP_618390.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20092315|ref|NP_618390.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20092315|ref|NP_618390.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20092316|ref|NP_618391.1| - 7.2e-20 71.2 0.0 1.3e-19 70.4 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20092316|ref|NP_618391.1| - 1.6e-07 30.7 0.1 3.9e-07 29.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20092316|ref|NP_618391.1| - 4.1e-06 26.2 0.3 1.9e-05 24.1 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain rve_3 PF13683.1 gi|20092316|ref|NP_618391.1| - 2.4e-05 23.7 0.0 6.7e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.10 gi|20092316|ref|NP_618391.1| - 8.5e-05 22.3 0.1 0.00019 21.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_36 PF13730.1 gi|20092316|ref|NP_618391.1| - 0.0077 16.3 0.0 0.19 11.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20092316|ref|NP_618391.1| - 0.0084 15.7 0.1 0.035 13.7 0.0 2.0 2 0 0 2 2 2 1 Tc3 transposase Sigma70_r4 PF04545.11 gi|20092316|ref|NP_618391.1| - 0.011 15.0 0.1 0.028 13.7 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|20092316|ref|NP_618391.1| - 0.015 15.4 0.0 0.056 13.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20092316|ref|NP_618391.1| - 0.024 14.6 0.1 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20092316|ref|NP_618391.1| - 0.027 14.0 0.0 0.081 12.4 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.17 gi|20092316|ref|NP_618391.1| - 0.033 14.0 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Phage_NinH PF06322.6 gi|20092316|ref|NP_618391.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20092316|ref|NP_618391.1| - 0.067 12.5 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20092316|ref|NP_618391.1| - 0.087 12.2 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Pox_MCEL PF03291.11 gi|20092317|ref|NP_618392.1| - 0.00025 20.0 0.1 0.00039 19.3 0.1 1.2 1 1 0 1 1 1 1 mRNA capping enzyme MTS PF05175.9 gi|20092317|ref|NP_618392.1| - 0.00089 18.6 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|20092317|ref|NP_618392.1| - 0.0013 18.4 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20092317|ref|NP_618392.1| - 0.0035 16.4 0.0 0.0059 15.6 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|20092317|ref|NP_618392.1| - 0.0072 15.4 0.0 0.015 14.3 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|20092317|ref|NP_618392.1| - 0.017 14.7 0.1 0.025 14.1 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092317|ref|NP_618392.1| - 0.054 14.0 0.0 0.066 13.7 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092317|ref|NP_618392.1| - 0.096 13.0 0.0 0.15 12.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092317|ref|NP_618392.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|20092317|ref|NP_618392.1| - 0.15 11.5 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_23 PF13384.1 gi|20092319|ref|NP_618394.1| - 1.6e-06 27.5 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20092319|ref|NP_618394.1| - 7.9e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20092319|ref|NP_618394.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20092319|ref|NP_618394.1| - 0.00067 19.7 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20092319|ref|NP_618394.1| - 0.0061 16.0 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092319|ref|NP_618394.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20092319|ref|NP_618394.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20092319|ref|NP_618394.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20092319|ref|NP_618394.1| - 0.02 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20092319|ref|NP_618394.1| - 0.051 13.5 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20092319|ref|NP_618394.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20092319|ref|NP_618394.1| - 0.079 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20092319|ref|NP_618394.1| - 0.13 12.2 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20092319|ref|NP_618394.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20092319|ref|NP_618394.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|20092319|ref|NP_618394.1| - 5.6 6.7 7.5 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain F420_ligase PF01996.11 gi|20092320|ref|NP_618395.1| - 3.1e-62 209.6 0.0 3.6e-62 209.4 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase DUF1638 PF07796.6 gi|20092321|ref|NP_618396.1| - 3.9e-39 133.9 0.1 5.3e-39 133.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Pox_A3L PF05288.6 gi|20092321|ref|NP_618396.1| - 0.033 13.9 0.2 0.13 11.9 0.1 2.0 2 0 0 2 2 2 0 Poxvirus A3L Protein MTHFR PF02219.12 gi|20092322|ref|NP_618397.1| - 4.9e-38 130.8 0.0 5.7e-38 130.6 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase MTHFR_C PF12225.3 gi|20092323|ref|NP_618398.1| - 3e-32 110.0 1.2 6.8e-32 108.8 0.9 1.6 1 0 0 1 1 1 1 Methylene-tetrahydrofolate reductase C terminal PrmA PF06325.8 gi|20092323|ref|NP_618398.1| - 0.058 12.4 0.1 0.082 12.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Pterin_bind PF00809.17 gi|20092324|ref|NP_618399.1| - 3.6e-46 157.2 0.0 6e-46 156.4 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme YlzJ PF14035.1 gi|20092325|ref|NP_618400.1| - 0.026 14.5 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 YlzJ-like protein THF_DHG_CYH_C PF02882.14 gi|20092327|ref|NP_618402.1| - 8.4e-64 213.4 3.1 1.2e-63 213.0 2.2 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|20092327|ref|NP_618402.1| - 5.4e-39 132.8 0.1 7.6e-39 132.3 0.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.16 gi|20092327|ref|NP_618402.1| - 0.041 13.7 2.2 2.8 7.7 1.5 2.3 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SHMT PF00464.14 gi|20092328|ref|NP_618403.1| - 5.9e-177 587.9 1.0 6.8e-177 587.7 0.7 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|20092328|ref|NP_618403.1| - 7.2e-09 35.0 0.0 1e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|20092328|ref|NP_618403.1| - 6.3e-07 28.8 0.4 8.2e-07 28.4 0.3 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|20092328|ref|NP_618403.1| - 0.0042 16.1 0.2 0.007 15.4 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|20092328|ref|NP_618403.1| - 0.0053 15.5 0.0 0.01 14.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|20092328|ref|NP_618403.1| - 0.066 11.7 0.0 0.14 10.7 0.0 1.6 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Formyl_trans_N PF00551.14 gi|20092330|ref|NP_618405.1| - 2.4e-57 193.3 0.0 2.8e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.17 gi|20092332|ref|NP_618407.1| - 6.9e-10 38.6 0.1 1.9e-09 37.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|20092332|ref|NP_618407.1| - 6.9e-08 32.4 0.0 3.1e-07 30.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|20092332|ref|NP_618407.1| - 5.6e-05 23.2 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|20092332|ref|NP_618407.1| - 0.0027 17.3 0.1 0.014 15.0 0.0 2.2 2 0 0 2 2 2 1 HTH domain MerR_1 PF13411.1 gi|20092332|ref|NP_618407.1| - 0.0048 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.18 gi|20092332|ref|NP_618407.1| - 0.0055 16.2 0.1 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma54_DBD PF04552.8 gi|20092332|ref|NP_618407.1| - 0.042 13.3 0.1 1.9 7.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-54, DNA binding domain DUF1743 PF08489.6 gi|20092333|ref|NP_618408.1| - 7.6e-40 135.3 0.0 1.4e-39 134.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|20092333|ref|NP_618408.1| - 0.0021 17.6 3.1 0.0054 16.3 2.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|20092333|ref|NP_618408.1| - 0.053 13.2 2.8 0.12 12.1 1.9 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|20092333|ref|NP_618408.1| - 0.075 13.0 3.6 2.4 8.2 0.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20092333|ref|NP_618408.1| - 0.29 10.9 7.1 0.72 9.6 4.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|20092333|ref|NP_618408.1| - 0.49 10.2 8.7 0.034 13.9 1.9 2.1 2 0 0 2 2 2 0 zinc-ribbons DNA_RNApol_7kD PF03604.8 gi|20092333|ref|NP_618408.1| - 0.71 9.4 7.7 0.31 10.5 2.9 2.3 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|20092333|ref|NP_618408.1| - 1.3 8.3 4.7 2.9 7.2 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|20092333|ref|NP_618408.1| - 1.3 8.8 7.8 0.6 9.9 3.1 2.1 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20092333|ref|NP_618408.1| - 1.4 8.5 8.1 9.2 5.9 5.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.1 gi|20092333|ref|NP_618408.1| - 2.2 8.1 6.2 6.6 6.6 4.1 2.0 1 1 0 1 1 1 0 YhfH-like protein zf-C2H2 PF00096.21 gi|20092333|ref|NP_618408.1| - 3.9 8.0 5.3 21 5.7 0.2 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type NAD_synthase PF02540.12 gi|20092334|ref|NP_618409.1| - 5.2e-87 290.7 0.0 6e-87 290.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|20092334|ref|NP_618409.1| - 0.00034 19.2 0.0 0.0015 17.2 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|20092334|ref|NP_618409.1| - 0.057 12.8 0.0 0.076 12.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|20092334|ref|NP_618409.1| - 0.094 11.9 0.0 0.43 9.8 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC AAA PF00004.24 gi|20092335|ref|NP_618410.1| - 2.8e-97 322.0 0.0 2.7e-47 160.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|20092335|ref|NP_618410.1| - 9e-30 102.4 0.4 4.2e-29 100.3 0.1 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|20092335|ref|NP_618410.1| - 3.4e-15 55.7 0.0 9.4e-08 31.3 0.0 3.0 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|20092335|ref|NP_618410.1| - 1.3e-14 53.5 0.2 2e-13 49.7 0.2 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|20092335|ref|NP_618410.1| - 9.9e-14 51.5 0.8 0.00023 21.2 0.1 4.1 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|20092335|ref|NP_618410.1| - 1.1e-13 51.1 0.3 1.5e-05 24.7 0.0 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|20092335|ref|NP_618410.1| - 2.6e-13 50.2 0.1 3.5e-05 23.7 0.0 3.1 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|20092335|ref|NP_618410.1| - 8.5e-12 45.9 1.5 0.00019 22.2 0.0 3.8 3 2 0 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|20092335|ref|NP_618410.1| - 1.2e-11 44.6 0.0 6.8e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|20092335|ref|NP_618410.1| - 1.9e-11 44.2 0.1 0.00049 20.1 0.0 3.2 2 2 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.8 gi|20092335|ref|NP_618410.1| - 3.8e-11 42.3 0.0 4.7e-06 25.5 0.0 2.9 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|20092335|ref|NP_618410.1| - 1.8e-09 37.2 0.0 0.00094 18.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|20092335|ref|NP_618410.1| - 8.1e-09 35.8 0.5 0.0052 17.0 0.0 3.4 2 1 2 4 4 3 2 AAA domain AAA_33 PF13671.1 gi|20092335|ref|NP_618410.1| - 1.1e-08 35.0 0.0 0.0042 16.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|20092335|ref|NP_618410.1| - 1.6e-08 34.1 1.4 0.0034 17.0 0.0 2.8 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|20092335|ref|NP_618410.1| - 2.2e-07 30.1 0.0 0.0057 15.7 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.21 gi|20092335|ref|NP_618410.1| - 5.5e-07 29.2 0.1 0.026 13.9 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|20092335|ref|NP_618410.1| - 6.9e-07 29.3 0.0 0.04 13.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|20092335|ref|NP_618410.1| - 9.9e-07 28.1 0.2 0.027 13.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|20092335|ref|NP_618410.1| - 1.6e-06 27.6 6.3 0.093 12.1 0.3 4.3 2 2 0 3 3 3 2 AAA domain RNA_helicase PF00910.17 gi|20092335|ref|NP_618410.1| - 2.1e-06 27.8 0.0 0.081 13.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Arch_ATPase PF01637.13 gi|20092335|ref|NP_618410.1| - 9.2e-06 25.5 1.8 0.056 13.1 0.0 3.5 3 1 0 3 3 2 2 Archaeal ATPase Parvo_NS1 PF01057.12 gi|20092335|ref|NP_618410.1| - 1.1e-05 24.4 0.1 0.1 11.4 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.1 gi|20092335|ref|NP_618410.1| - 1.5e-05 25.0 0.0 0.14 12.1 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|20092335|ref|NP_618410.1| - 1.7e-05 25.1 0.1 0.28 11.4 0.0 3.3 3 1 0 3 3 2 2 ABC transporter PhoH PF02562.11 gi|20092335|ref|NP_618410.1| - 2.2e-05 23.7 0.7 0.27 10.4 0.0 3.1 3 0 0 3 3 2 2 PhoH-like protein KaiC PF06745.8 gi|20092335|ref|NP_618410.1| - 2.3e-05 23.6 3.1 0.035 13.2 0.0 3.9 2 2 2 4 4 4 1 KaiC NB-ARC PF00931.17 gi|20092335|ref|NP_618410.1| - 3.9e-05 22.6 0.0 0.11 11.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.1 gi|20092335|ref|NP_618410.1| - 6e-05 22.7 1.2 0.36 10.3 0.1 2.8 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|20092335|ref|NP_618410.1| - 6.1e-05 22.6 0.0 0.57 9.7 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|20092335|ref|NP_618410.1| - 6.8e-05 21.9 0.0 0.16 10.8 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|20092335|ref|NP_618410.1| - 0.00027 19.9 0.0 0.22 10.4 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|20092335|ref|NP_618410.1| - 0.00042 19.8 0.0 0.089 12.2 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|20092335|ref|NP_618410.1| - 0.0005 19.7 0.5 4.4 6.9 0.0 3.9 4 0 0 4 4 4 0 NACHT domain NTPase_1 PF03266.10 gi|20092335|ref|NP_618410.1| - 0.0008 19.1 1.3 3.2 7.4 0.0 3.9 2 1 1 3 3 3 0 NTPase AAA_11 PF13086.1 gi|20092335|ref|NP_618410.1| - 0.00083 18.9 0.0 0.91 9.0 0.0 2.5 2 1 0 2 2 2 2 AAA domain Cytidylate_kin2 PF13189.1 gi|20092335|ref|NP_618410.1| - 0.0011 18.9 0.3 0.71 9.7 0.0 2.7 3 0 0 3 3 2 1 Cytidylate kinase-like family Bac_DnaA PF00308.13 gi|20092335|ref|NP_618410.1| - 0.0018 17.9 0.0 1.4 8.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_30 PF13604.1 gi|20092335|ref|NP_618410.1| - 0.002 17.7 1.0 2.5 7.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain ResIII PF04851.10 gi|20092335|ref|NP_618410.1| - 0.002 17.9 0.1 0.73 9.6 0.0 3.0 2 1 1 3 3 2 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|20092335|ref|NP_618410.1| - 0.0027 16.6 0.0 0.23 10.3 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein SKI PF01202.17 gi|20092335|ref|NP_618410.1| - 0.0038 17.1 0.2 1.9 8.3 0.0 2.9 3 0 0 3 3 2 1 Shikimate kinase IPT PF01745.11 gi|20092335|ref|NP_618410.1| - 0.0044 16.2 0.1 1.1 8.3 0.0 2.6 2 0 0 2 2 2 1 Isopentenyl transferase Guanylate_kin PF00625.16 gi|20092335|ref|NP_618410.1| - 0.0048 16.3 0.2 5.5 6.3 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase UPF0079 PF02367.12 gi|20092335|ref|NP_618410.1| - 0.0077 15.8 0.3 5.3 6.6 0.0 2.9 2 1 1 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|20092335|ref|NP_618410.1| - 0.023 14.2 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.9 gi|20092335|ref|NP_618410.1| - 0.023 13.6 0.1 1.8 7.4 0.0 3.1 3 1 0 3 3 3 0 KAP family P-loop domain Vps4_C PF09336.5 gi|20092335|ref|NP_618410.1| - 0.025 14.4 0.1 0.29 11.0 0.0 2.4 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain KTI12 PF08433.5 gi|20092335|ref|NP_618410.1| - 0.073 12.2 0.0 11 5.0 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zot PF05707.7 gi|20092335|ref|NP_618410.1| - 0.11 12.0 0.8 42 3.5 0.1 3.9 3 1 0 3 3 3 0 Zonular occludens toxin (Zot) Rad17 PF03215.10 gi|20092335|ref|NP_618410.1| - 0.19 10.3 0.0 2.3 6.7 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|20092335|ref|NP_618410.1| - 0.66 10.2 6.7 11 6.2 0.0 3.5 4 0 0 4 4 3 0 AAA domain PRC PF05239.11 gi|20092336|ref|NP_618411.1| - 1.3e-16 60.1 0.4 1.5e-16 60.0 0.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain DDE_Tnp_IS66 PF03050.9 gi|20092337|ref|NP_618412.1| - 1.1e-68 231.3 0.0 1.8e-68 230.7 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|20092337|ref|NP_618412.1| - 6.1e-09 35.7 8.6 6.1e-09 35.7 6.0 2.3 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|20092337|ref|NP_618412.1| - 0.0013 18.1 7.6 0.071 12.6 0.3 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|20092337|ref|NP_618412.1| - 0.0055 16.4 1.2 0.023 14.4 0.8 2.1 1 0 0 1 1 1 1 Double zinc ribbon DDE_Tnp_IS240 PF13610.1 gi|20092337|ref|NP_618412.1| - 0.01 15.7 0.8 0.11 12.4 0.3 2.3 2 0 0 2 2 2 0 DDE domain SlyX PF04102.7 gi|20092337|ref|NP_618412.1| - 0.016 15.5 0.2 0.016 15.5 0.1 2.8 3 1 0 3 3 3 0 SlyX zf-ribbon_3 PF13248.1 gi|20092337|ref|NP_618412.1| - 0.026 13.7 5.2 0.14 11.4 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DASH_Spc34 PF08657.5 gi|20092337|ref|NP_618412.1| - 0.04 13.5 0.3 0.04 13.5 0.2 2.0 2 1 0 2 2 2 0 DASH complex subunit Spc34 zf-FPG_IleRS PF06827.9 gi|20092337|ref|NP_618412.1| - 0.11 12.1 2.7 9 6.0 0.0 2.7 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2034 PF10356.4 gi|20092337|ref|NP_618412.1| - 0.12 11.5 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) RBD-FIP PF09457.5 gi|20092337|ref|NP_618412.1| - 0.73 9.6 4.4 19 5.1 0.3 2.9 2 0 0 2 2 2 0 FIP domain UPF0547 PF10571.4 gi|20092337|ref|NP_618412.1| - 1.1 8.9 12.5 1.3 8.8 2.0 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.1 gi|20092337|ref|NP_618412.1| - 4.9 7.0 7.7 22 4.9 1.8 3.0 2 0 0 2 2 2 0 YhfH-like protein Methyltransf_11 PF08241.7 gi|20092338|ref|NP_618413.1| - 4.1e-09 36.8 0.0 6.3e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092338|ref|NP_618413.1| - 2.4e-08 34.5 0.0 6.6e-08 33.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|20092338|ref|NP_618413.1| - 2.8e-08 33.1 0.0 3.1e-08 33.0 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|20092338|ref|NP_618413.1| - 4e-06 26.4 0.0 5.9e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20092338|ref|NP_618413.1| - 4.1e-06 26.1 0.0 4.8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_25 PF13649.1 gi|20092338|ref|NP_618413.1| - 4.3e-05 23.7 0.0 6.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092338|ref|NP_618413.1| - 4.9e-05 22.7 0.0 6.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20092338|ref|NP_618413.1| - 0.00022 21.2 0.0 0.00031 20.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092338|ref|NP_618413.1| - 0.00033 20.4 0.0 0.00038 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092338|ref|NP_618413.1| - 0.0005 20.4 0.0 0.00073 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20092338|ref|NP_618413.1| - 0.0006 18.9 0.0 0.00089 18.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|20092338|ref|NP_618413.1| - 0.0012 18.5 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20092338|ref|NP_618413.1| - 0.0054 16.2 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20092338|ref|NP_618413.1| - 0.0057 15.8 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|20092338|ref|NP_618413.1| - 0.012 15.0 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_24 PF13578.1 gi|20092338|ref|NP_618413.1| - 0.035 14.9 0.0 0.048 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|20092338|ref|NP_618413.1| - 0.053 12.2 0.0 0.06 12.0 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DOT1 PF08123.8 gi|20092338|ref|NP_618413.1| - 0.11 11.8 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 MetW PF07021.7 gi|20092338|ref|NP_618413.1| - 0.12 11.7 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PhzC-PhzF PF02567.11 gi|20092339|ref|NP_618414.1| - 8.6e-61 205.6 0.0 1.1e-60 205.2 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DUF3795 PF12675.2 gi|20092340|ref|NP_618415.1| - 1.9e-06 27.9 24.7 8.4e-06 25.8 17.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3795) Methyltransf_31 PF13847.1 gi|20092341|ref|NP_618416.1| - 6.8e-21 74.4 0.0 8.8e-21 74.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092341|ref|NP_618416.1| - 6.7e-20 71.3 0.0 1.1e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092341|ref|NP_618416.1| - 5.6e-13 49.4 0.0 9.5e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092341|ref|NP_618416.1| - 2.3e-12 47.1 0.1 5.8e-12 45.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092341|ref|NP_618416.1| - 3.9e-12 46.1 0.1 4.9e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092341|ref|NP_618416.1| - 9.9e-11 41.9 0.0 1.8e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092341|ref|NP_618416.1| - 1.7e-09 37.1 0.1 2.3e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|20092341|ref|NP_618416.1| - 2.5e-08 33.3 0.0 3.6e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|20092341|ref|NP_618416.1| - 1.4e-07 30.9 0.1 1.9e-07 30.4 0.1 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|20092341|ref|NP_618416.1| - 3.5e-07 29.7 0.0 4.9e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20092341|ref|NP_618416.1| - 1.8e-06 27.9 0.0 2.8e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|20092341|ref|NP_618416.1| - 2.3e-06 27.1 0.0 2.9e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|20092341|ref|NP_618416.1| - 8.8e-06 24.3 0.0 0.00012 20.6 0.0 1.9 1 1 1 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.6 gi|20092341|ref|NP_618416.1| - 0.00022 20.0 0.0 0.0003 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|20092341|ref|NP_618416.1| - 0.00024 20.5 0.0 0.00034 20.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|20092341|ref|NP_618416.1| - 0.001 18.7 0.1 0.0025 17.4 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|20092341|ref|NP_618416.1| - 0.0022 17.0 0.0 0.0028 16.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|20092341|ref|NP_618416.1| - 0.026 13.6 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|20092341|ref|NP_618416.1| - 0.026 14.2 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GrpB PF04229.9 gi|20092342|ref|NP_618417.1| - 5.3e-51 172.6 0.0 6e-51 172.4 0.0 1.0 1 0 0 1 1 1 1 GrpB protein Cupin_2 PF07883.6 gi|20092344|ref|NP_618419.1| - 1.7e-07 30.6 0.0 7.4e-07 28.5 0.0 1.8 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.14 gi|20092344|ref|NP_618419.1| - 0.00015 21.4 0.0 0.00022 20.9 0.0 1.3 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|20092344|ref|NP_618419.1| - 0.00034 19.9 0.0 0.00042 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|20092344|ref|NP_618419.1| - 0.018 14.6 0.0 0.021 14.3 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ MannoseP_isomer PF01050.13 gi|20092344|ref|NP_618419.1| - 0.034 13.7 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase ARD PF03079.9 gi|20092344|ref|NP_618419.1| - 0.045 13.7 0.2 0.061 13.2 0.1 1.3 1 1 0 1 1 1 0 ARD/ARD' family DUF2189 PF09955.4 gi|20092345|ref|NP_618420.1| - 0.86 9.5 8.0 1.3 8.9 0.0 3.2 2 1 1 3 3 3 0 Predicted integral membrane protein (DUF2189) MerC PF03203.9 gi|20092345|ref|NP_618420.1| - 2 8.7 7.6 0.49 10.7 0.3 2.3 2 1 0 2 2 2 0 MerC mercury resistance protein PrgI PF12666.2 gi|20092345|ref|NP_618420.1| - 3.5 7.8 5.8 14 5.9 0.7 2.2 2 0 0 2 2 2 0 PrgI family protein Transglut_core PF01841.14 gi|20092346|ref|NP_618421.1| - 9.1e-12 45.1 0.0 1.2e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily PNK3P PF08645.6 gi|20092346|ref|NP_618421.1| - 0.14 11.5 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase Acetyltransf_10 PF13673.1 gi|20092348|ref|NP_618423.1| - 4.6e-11 42.8 0.0 2.4e-09 37.3 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20092348|ref|NP_618423.1| - 1.8e-09 37.4 0.0 1.7e-08 34.3 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20092348|ref|NP_618423.1| - 3.3e-06 27.1 0.1 1.7e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|20092348|ref|NP_618423.1| - 0.0018 18.2 0.0 0.0071 16.3 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20092348|ref|NP_618423.1| - 0.016 15.1 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20092348|ref|NP_618423.1| - 0.077 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CheB_methylest PF01339.12 gi|20092349|ref|NP_618424.1| - 3.8e-63 212.2 0.0 6e-63 211.5 0.0 1.3 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.13 gi|20092349|ref|NP_618424.1| - 2.7e-55 186.7 0.0 4.5e-55 185.9 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.1 gi|20092349|ref|NP_618424.1| - 1.2e-26 93.0 0.0 1.4e-23 83.1 0.0 4.1 4 0 0 4 4 3 1 PAS domain CheR_N PF03705.10 gi|20092349|ref|NP_618424.1| - 2.9e-16 58.5 0.1 6.8e-16 57.3 0.1 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_9 PF13426.1 gi|20092349|ref|NP_618424.1| - 1.2e-14 54.5 0.4 1.3e-08 35.1 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|20092349|ref|NP_618424.1| - 5.9e-11 42.1 0.2 6.1e-08 32.4 0.0 4.3 4 1 0 4 4 4 1 PAS fold PAS_4 PF08448.5 gi|20092349|ref|NP_618424.1| - 2.9e-10 40.1 0.0 0.00057 19.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.2 gi|20092349|ref|NP_618424.1| - 3.2e-06 27.1 0.0 0.029 14.3 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|20092349|ref|NP_618424.1| - 6.6e-06 25.8 0.0 5.6e-05 22.8 0.0 2.5 2 0 0 2 2 2 1 PAS domain CENP-F_leu_zip PF10473.4 gi|20092349|ref|NP_618424.1| - 0.00018 21.3 19.8 0.00052 19.8 13.7 1.7 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IncA PF04156.9 gi|20092349|ref|NP_618424.1| - 0.0011 18.5 15.6 0.0028 17.2 10.8 1.6 1 0 0 1 1 1 1 IncA protein AAA_13 PF13166.1 gi|20092349|ref|NP_618424.1| - 0.0085 14.6 8.9 0.014 13.9 6.1 1.2 1 0 0 1 1 1 1 AAA domain ADIP PF11559.3 gi|20092349|ref|NP_618424.1| - 0.067 13.0 11.7 0.14 12.0 8.1 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding OmpH PF03938.9 gi|20092349|ref|NP_618424.1| - 0.072 13.0 7.7 0.2 11.6 5.3 1.7 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Golgin_A5 PF09787.4 gi|20092349|ref|NP_618424.1| - 0.091 11.2 10.2 0.16 10.4 7.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 Laminin_II PF06009.7 gi|20092349|ref|NP_618424.1| - 0.12 12.0 7.3 0.28 10.9 5.1 1.6 1 0 0 1 1 1 0 Laminin Domain II Fez1 PF06818.10 gi|20092349|ref|NP_618424.1| - 0.18 11.8 11.5 0.036 14.1 5.2 1.7 2 0 0 2 2 2 0 Fez1 Atg14 PF10186.4 gi|20092349|ref|NP_618424.1| - 0.21 10.4 7.5 0.35 9.7 5.2 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TBPIP PF07106.8 gi|20092349|ref|NP_618424.1| - 0.22 11.0 12.1 0.66 9.5 8.4 1.8 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Reo_sigmaC PF04582.7 gi|20092349|ref|NP_618424.1| - 0.36 9.9 2.3 0.68 9.0 1.6 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein V_ATPase_I PF01496.14 gi|20092349|ref|NP_618424.1| - 0.46 8.2 6.3 0.73 7.6 4.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|20092349|ref|NP_618424.1| - 0.51 8.9 18.0 0.22 10.1 10.7 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Exonuc_VII_L PF02601.10 gi|20092349|ref|NP_618424.1| - 2 7.5 10.5 3.9 6.5 7.3 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit zf-C4H2 PF10146.4 gi|20092349|ref|NP_618424.1| - 2.4 8.1 9.6 5.6 6.9 6.6 1.6 1 0 0 1 1 1 0 Zinc finger-containing protein APG6 PF04111.7 gi|20092349|ref|NP_618424.1| - 2.7 6.9 14.9 4.5 6.2 10.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Bap31 PF05529.7 gi|20092349|ref|NP_618424.1| - 5.6 6.3 7.4 12 5.2 5.1 1.6 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like PAS_3 PF08447.6 gi|20092350|ref|NP_618425.1| - 2.7e-42 142.7 0.1 1e-20 73.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|20092350|ref|NP_618425.1| - 1.5e-37 128.1 0.5 2.7e-14 53.3 0.0 4.5 5 0 0 5 5 5 3 PAS domain HisKA_2 PF07568.7 gi|20092350|ref|NP_618425.1| - 1.9e-32 110.9 0.8 1.7e-31 107.8 0.6 2.6 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.19 gi|20092350|ref|NP_618425.1| - 1.1e-28 99.2 0.1 3.6e-13 49.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|20092350|ref|NP_618425.1| - 7.7e-16 58.0 0.0 3.3e-11 43.2 0.0 3.5 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|20092350|ref|NP_618425.1| - 6.1e-10 38.7 0.4 5.9e-09 35.6 0.0 2.8 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|20092350|ref|NP_618425.1| - 1.3e-08 34.3 0.0 9.1e-06 25.3 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|20092350|ref|NP_618425.1| - 0.0028 17.4 0.0 0.0061 16.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|20092350|ref|NP_618425.1| - 0.0046 17.3 0.1 0.025 15.0 0.1 2.2 2 0 0 2 2 2 1 HWE histidine kinase T2SF PF00482.18 gi|20092350|ref|NP_618425.1| - 0.069 13.0 0.4 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Hydrolase_3 PF08282.7 gi|20092351|ref|NP_618426.1| - 4.4e-33 114.9 1.2 4.6e-23 82.0 0.2 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|20092351|ref|NP_618426.1| - 1.4e-09 37.5 0.0 1.1e-08 34.6 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|20092351|ref|NP_618426.1| - 9.2e-07 29.2 0.0 0.0004 20.6 0.0 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|20092351|ref|NP_618426.1| - 1.7e-06 28.6 2.4 0.0055 17.1 0.3 3.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|20092351|ref|NP_618426.1| - 0.00084 18.3 0.0 0.0017 17.3 0.0 1.5 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_like PF13242.1 gi|20092351|ref|NP_618426.1| - 0.0038 16.9 0.1 0.0061 16.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|20092351|ref|NP_618426.1| - 0.022 15.0 0.0 0.1 12.8 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Rad51 PF08423.6 gi|20092352|ref|NP_618427.1| - 1e-90 303.1 0.1 1.3e-90 302.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|20092352|ref|NP_618427.1| - 1.4e-14 54.0 0.5 4.5e-14 52.3 0.3 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|20092352|ref|NP_618427.1| - 2.9e-10 39.8 0.0 4.3e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|20092352|ref|NP_618427.1| - 2.1e-08 33.6 0.1 7.6e-07 28.4 0.1 2.1 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|20092352|ref|NP_618427.1| - 1.2e-07 31.0 0.1 1.9e-07 30.4 0.1 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.18 gi|20092352|ref|NP_618427.1| - 6.1e-07 28.7 2.5 0.0026 17.3 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|20092352|ref|NP_618427.1| - 1.1e-05 25.2 0.2 2.6e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|20092352|ref|NP_618427.1| - 3.2e-05 23.7 0.0 0.00027 20.7 0.0 2.3 2 1 0 2 2 2 1 Pathogenicity locus AAA_22 PF13401.1 gi|20092352|ref|NP_618427.1| - 0.00018 21.6 0.0 0.00035 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain IMS_HHH PF11798.3 gi|20092352|ref|NP_618427.1| - 0.00098 19.0 0.0 0.0059 16.5 0.0 2.4 3 0 0 3 3 2 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|20092352|ref|NP_618427.1| - 0.0024 17.3 0.0 0.0084 15.6 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_8 PF14716.1 gi|20092352|ref|NP_618427.1| - 0.0043 17.1 0.1 0.32 11.2 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|20092352|ref|NP_618427.1| - 0.01 15.7 0.1 3.3 7.7 0.0 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix motif DUF4332 PF14229.1 gi|20092352|ref|NP_618427.1| - 0.012 15.5 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) NACHT PF05729.7 gi|20092352|ref|NP_618427.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|20092352|ref|NP_618427.1| - 0.014 14.9 0.0 0.029 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|20092352|ref|NP_618427.1| - 0.015 14.9 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DUF2075 PF09848.4 gi|20092352|ref|NP_618427.1| - 0.024 13.5 0.1 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.20 gi|20092352|ref|NP_618427.1| - 0.025 14.0 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BAF PF02961.9 gi|20092352|ref|NP_618427.1| - 0.03 14.6 0.0 0.47 10.7 0.0 2.3 2 0 0 2 2 2 0 Barrier to autointegration factor ABC_tran PF00005.22 gi|20092352|ref|NP_618427.1| - 0.061 13.6 0.2 4.4 7.5 0.1 2.3 2 0 0 2 2 2 0 ABC transporter PhoH PF02562.11 gi|20092352|ref|NP_618427.1| - 0.071 12.3 0.1 0.19 10.9 0.1 1.6 1 1 0 1 1 1 0 PhoH-like protein UPF0079 PF02367.12 gi|20092352|ref|NP_618427.1| - 0.073 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|20092352|ref|NP_618427.1| - 0.098 11.7 0.0 4.8 6.2 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin CTP_transf_2 PF01467.21 gi|20092353|ref|NP_618428.1| - 1.8e-12 47.5 0.1 6.1e-12 45.8 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase DUF4351 PF14261.1 gi|20092354|ref|NP_618429.1| - 0.0032 17.3 0.6 0.017 14.9 0.5 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4351) DUF3775 PF12616.3 gi|20092354|ref|NP_618429.1| - 0.059 13.1 0.3 0.078 12.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) AP_endonuc_2 PF01261.19 gi|20092355|ref|NP_618430.1| - 3.5e-22 78.7 0.0 4.5e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DJ-1_PfpI PF01965.19 gi|20092355|ref|NP_618430.1| - 0.026 13.9 0.0 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 DJ-1/PfpI family Meth_synt_2 PF01717.13 gi|20092356|ref|NP_618431.1| - 0.0001 21.4 0.2 0.2 10.6 0.0 2.3 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain DUF378 PF04070.7 gi|20092357|ref|NP_618432.1| - 2.7e-23 81.3 4.2 3.1e-23 81.1 2.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) NdhL PF10716.4 gi|20092357|ref|NP_618432.1| - 0.042 13.6 0.1 0.053 13.2 0.1 1.3 1 1 0 1 1 1 0 NADH dehydrogenase transmembrane subunit DUF981 PF06168.6 gi|20092357|ref|NP_618432.1| - 0.19 11.5 2.7 8.3 6.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF981) ABC_tran PF00005.22 gi|20092358|ref|NP_618433.1| - 3.3e-33 114.8 0.0 5e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092358|ref|NP_618433.1| - 5.1e-15 56.1 1.4 4.9e-09 36.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20092358|ref|NP_618433.1| - 4e-07 29.4 0.0 7.7e-07 28.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20092358|ref|NP_618433.1| - 1.1e-05 24.7 0.1 0.00072 18.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|20092358|ref|NP_618433.1| - 0.00023 20.6 0.2 0.00047 19.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|20092358|ref|NP_618433.1| - 0.00071 18.1 0.3 0.72 8.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|20092358|ref|NP_618433.1| - 0.011 14.9 0.1 0.029 13.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|20092358|ref|NP_618433.1| - 0.013 15.8 0.2 0.024 14.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|20092358|ref|NP_618433.1| - 0.088 12.7 0.1 0.37 10.7 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|20092358|ref|NP_618433.1| - 0.12 12.6 0.0 2.9 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF2813 PF11398.3 gi|20092358|ref|NP_618433.1| - 0.16 11.0 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) CbiQ PF02361.11 gi|20092359|ref|NP_618434.1| - 5.2e-35 121.0 12.1 8.6e-35 120.3 8.4 1.3 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.10 gi|20092360|ref|NP_618435.1| - 2.8e-25 88.1 0.4 3.5e-25 87.7 0.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.11 gi|20092361|ref|NP_618436.1| - 1.4e-54 184.8 22.1 1.5e-54 184.6 15.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|20092361|ref|NP_618436.1| - 0.044 13.6 27.0 0.11 12.3 15.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) Tetraspannin PF00335.15 gi|20092361|ref|NP_618436.1| - 3.9 6.6 7.3 0.61 9.3 1.4 2.1 1 1 1 2 2 2 0 Tetraspanin family SNARE_assoc PF09335.6 gi|20092362|ref|NP_618437.1| - 3.8e-20 72.3 4.4 3.8e-20 72.3 3.1 1.6 1 1 1 2 2 2 1 SNARE associated Golgi protein DUF4112 PF13430.1 gi|20092362|ref|NP_618437.1| - 0.11 12.3 0.4 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4112) S-layer PF07752.6 gi|20092363|ref|NP_618438.1| - 9.3e-185 611.6 37.0 5.5e-96 320.7 8.2 3.0 3 0 0 3 3 3 2 S-layer protein CarboxypepD_reg PF13620.1 gi|20092363|ref|NP_618438.1| - 6.9e-11 42.0 14.2 3e-06 27.1 2.0 4.4 4 0 0 4 4 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|20092363|ref|NP_618438.1| - 2.3e-08 33.9 8.6 2.3e-05 24.3 1.0 4.2 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) CARDB PF07705.6 gi|20092363|ref|NP_618438.1| - 3.4e-08 33.4 6.5 8.9e-08 32.1 1.1 3.4 1 1 1 2 2 2 1 CARDB BiPBP_C PF06832.7 gi|20092363|ref|NP_618438.1| - 4.5e-05 23.2 0.0 0.025 14.5 0.0 3.2 3 0 0 3 3 3 1 Penicillin-Binding Protein C-terminus Family YtkA PF13115.1 gi|20092363|ref|NP_618438.1| - 0.0023 18.2 6.8 0.21 11.9 0.2 3.6 3 0 0 3 3 3 2 YtkA-like tRNA-synt_1c_C PF03950.13 gi|20092363|ref|NP_618438.1| - 0.0034 17.0 0.7 10 5.7 0.0 4.0 4 0 0 4 4 4 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF4397 PF14344.1 gi|20092363|ref|NP_618438.1| - 0.0057 16.9 2.9 0.022 15.1 0.4 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4397) DUF11 PF01345.13 gi|20092363|ref|NP_618438.1| - 0.0071 16.3 0.4 1.5 8.9 0.0 3.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 DUF499 PF04465.7 gi|20092363|ref|NP_618438.1| - 0.0075 13.8 0.6 0.011 13.3 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF499) PrcB_C PF14343.1 gi|20092363|ref|NP_618438.1| - 0.0091 15.6 1.1 6.1 6.6 0.0 3.1 3 0 0 3 3 3 2 PrcB C-terminal PEGA PF08308.6 gi|20092363|ref|NP_618438.1| - 0.046 13.5 8.9 0.086 12.6 0.8 4.0 4 0 0 4 4 4 0 PEGA domain Cupredoxin_1 PF13473.1 gi|20092363|ref|NP_618438.1| - 0.057 13.3 0.2 0.94 9.4 0.1 3.1 2 1 0 2 2 2 0 Cupredoxin-like domain tRNA_NucTransf2 PF09249.6 gi|20092365|ref|NP_618440.1| - 1.8e-45 153.4 0.0 7.4e-45 151.5 0.0 1.9 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|20092365|ref|NP_618440.1| - 1.3e-11 44.6 0.0 5.1e-11 42.7 0.0 2.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|20092365|ref|NP_618440.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm OAS1_C PF10421.4 gi|20092365|ref|NP_618440.1| - 0.15 11.5 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus HEAT_2 PF13646.1 gi|20092366|ref|NP_618441.1| - 6e-69 228.3 1.5 3.8e-10 39.9 0.0 7.5 2 1 7 10 10 10 10 HEAT repeats HEAT_EZ PF13513.1 gi|20092366|ref|NP_618441.1| - 2.7e-29 100.8 5.4 0.0084 16.5 0.0 11.7 7 5 7 14 14 14 8 HEAT-like repeat HEAT PF02985.17 gi|20092366|ref|NP_618441.1| - 4.4e-26 88.5 14.0 0.2 11.8 0.0 15.8 17 0 0 17 17 17 4 HEAT repeat Adaptin_N PF01602.15 gi|20092366|ref|NP_618441.1| - 4.8e-25 87.8 0.0 2.1e-07 29.6 0.0 5.6 1 1 3 5 5 5 5 Adaptin N terminal region PNP_UDP_1 PF01048.15 gi|20092366|ref|NP_618441.1| - 3e-21 75.4 0.0 7.9e-21 74.0 0.0 1.7 2 0 0 2 2 2 1 Phosphorylase superfamily Nipped-B_C PF12830.2 gi|20092366|ref|NP_618441.1| - 7.8e-07 28.9 0.0 0.9 9.1 0.0 5.8 4 1 0 5 5 5 2 Sister chromatid cohesion C-terminus Vac14_Fab1_bd PF12755.2 gi|20092366|ref|NP_618441.1| - 2.6e-06 27.7 3.9 11 6.5 0.0 8.6 7 3 2 10 10 9 0 Vacuolar 14 Fab1-binding region Arm PF00514.18 gi|20092366|ref|NP_618441.1| - 0.00042 20.0 0.5 36 4.3 0.0 5.7 6 0 0 6 6 6 0 Armadillo/beta-catenin-like repeat ARHGEF5_35 PF15441.1 gi|20092366|ref|NP_618441.1| - 0.019 13.8 2.3 23 3.6 0.0 4.3 3 1 1 4 4 4 0 Rho guanine nucleotide exchange factor 5/35 TFCD_C PF12612.3 gi|20092366|ref|NP_618441.1| - 0.078 12.4 5.8 16 4.8 0.0 5.0 6 1 0 6 6 6 0 Tubulin folding cofactor D C terminal DUF1546 PF07571.8 gi|20092366|ref|NP_618441.1| - 0.1 12.7 1.0 18 5.5 0.0 4.7 3 1 2 5 5 5 0 Protein of unknown function (DUF1546) ParD PF09386.5 gi|20092366|ref|NP_618441.1| - 0.88 9.7 24.4 54 3.9 0.0 11.1 7 4 8 15 15 15 0 Antitoxin ParD FAA_hydrolase_N PF09298.6 gi|20092366|ref|NP_618441.1| - 1.1 9.2 8.6 53 3.8 0.1 5.7 3 1 5 8 8 7 0 Fumarylacetoacetase N-terminal Kelch_3 PF13415.1 gi|20092366|ref|NP_618441.1| - 2.2 8.5 10.5 1.4e+02 2.7 0.0 7.4 6 2 4 10 10 9 0 Galactose oxidase, central domain P4Ha_N PF08336.6 gi|20092366|ref|NP_618441.1| - 9 6.1 9.3 4.4 7.1 0.1 4.6 4 0 0 4 4 4 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region OGG_N PF07934.7 gi|20092367|ref|NP_618442.1| - 2.2e-29 101.7 0.1 5.6e-29 100.4 0.0 1.6 2 0 0 2 2 2 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|20092367|ref|NP_618442.1| - 5.4e-09 36.3 0.0 1.2e-08 35.1 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|20092367|ref|NP_618442.1| - 0.0071 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif ADP_PFK_GK PF04587.10 gi|20092368|ref|NP_618443.1| - 1.6e-60 204.6 0.0 8.4e-53 179.1 0.0 2.0 2 0 0 2 2 2 2 ADP-specific Phosphofructokinase/Glucokinase conserved region ADP_PFK_GK PF04587.10 gi|20092369|ref|NP_618444.1| - 4.6e-110 367.8 0.0 5.8e-110 367.5 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ArgJ PF01960.13 gi|20092370|ref|NP_618445.1| - 2.7e-136 454.0 3.7 3.2e-136 453.7 2.6 1.0 1 0 0 1 1 1 1 ArgJ family Bcl-2 PF00452.14 gi|20092370|ref|NP_618445.1| - 0.17 12.0 0.0 0.49 10.5 0.0 1.8 1 1 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family CBS PF00571.23 gi|20092371|ref|NP_618446.1| - 9.8e-39 130.8 3.8 5.6e-20 70.8 0.1 2.1 2 0 0 2 2 2 2 CBS domain H_kinase_N PF12282.3 gi|20092371|ref|NP_618446.1| - 0.058 13.0 0.2 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 Signal transduction histidine kinase Cache_3 PF14827.1 gi|20092371|ref|NP_618446.1| - 0.077 12.8 0.0 8.8 6.2 0.0 2.2 2 0 0 2 2 2 0 Sensory domain of two-component sensor kinase Semialdhyde_dh PF01118.19 gi|20092372|ref|NP_618447.1| - 4.3e-34 117.4 0.0 7.1e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|20092372|ref|NP_618447.1| - 2.8e-25 89.2 0.0 3.6e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|20092372|ref|NP_618447.1| - 0.00085 19.8 0.0 0.0055 17.2 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|20092372|ref|NP_618447.1| - 0.0099 15.7 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|20092372|ref|NP_618447.1| - 0.024 14.6 0.0 0.058 13.4 0.0 1.7 1 0 0 1 1 1 0 NADH(P)-binding DUF1628 PF07790.6 gi|20092373|ref|NP_618448.1| - 1.4e-09 38.5 0.1 1.7e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1056 PF06341.6 gi|20092373|ref|NP_618448.1| - 0.066 13.2 0.7 0.1 12.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) DUF2061 PF09834.4 gi|20092373|ref|NP_618448.1| - 0.14 12.3 0.4 0.23 11.6 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2061) Nuc_deoxyrib_tr PF05014.10 gi|20092374|ref|NP_618449.1| - 1.5e-32 111.7 0.0 1.8e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TIR_2 PF13676.1 gi|20092374|ref|NP_618449.1| - 0.021 14.9 0.0 0.039 14.1 0.0 1.5 1 1 0 1 1 1 0 TIR domain Acetyltransf_1 PF00583.19 gi|20092376|ref|NP_618451.1| - 9.3e-13 48.0 0.4 4.1e-12 45.9 0.3 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|20092376|ref|NP_618451.1| - 3.5e-11 43.2 0.0 4.6e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20092376|ref|NP_618451.1| - 8.9e-10 38.6 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20092376|ref|NP_618451.1| - 2.3e-05 24.5 0.0 3.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20092376|ref|NP_618451.1| - 0.003 17.4 0.0 0.12 12.2 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20092376|ref|NP_618451.1| - 0.0041 16.8 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|20092376|ref|NP_618451.1| - 0.015 15.1 0.1 0.055 13.3 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|20092376|ref|NP_618451.1| - 0.057 12.7 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_4 PF13420.1 gi|20092376|ref|NP_618451.1| - 0.073 13.0 0.0 0.16 11.9 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PMSR PF01625.16 gi|20092376|ref|NP_618451.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Peptide methionine sulfoxide reductase DUF1168 PF06658.7 gi|20092377|ref|NP_618452.1| - 0.3 10.5 12.3 0.3 10.5 8.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) YihI PF04220.7 gi|20092377|ref|NP_618452.1| - 3.2 7.0 12.6 3.9 6.7 8.7 1.3 1 0 0 1 1 1 0 Der GTPase activator (YihI) Sedlin_N PF04628.8 gi|20092378|ref|NP_618453.1| - 0.084 12.7 0.1 0.31 10.9 0.0 2.0 2 0 0 2 2 2 0 Sedlin, N-terminal conserved region SgrR_N PF12793.2 gi|20092378|ref|NP_618453.1| - 0.12 12.3 0.0 0.37 10.8 0.0 1.8 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DUF4096 PF13340.1 gi|20092379|ref|NP_618454.1| - 4.5e-30 103.3 0.2 1.2e-29 101.9 0.1 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.1 gi|20092379|ref|NP_618454.1| - 1.9e-16 60.0 1.9 1.9e-16 60.0 1.3 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092379|ref|NP_618454.1| - 3.8e-14 52.7 3.1 1.6e-13 50.7 2.2 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF2989 PF11207.3 gi|20092380|ref|NP_618455.1| - 0.0015 18.0 2.2 0.84 9.0 0.2 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2989) 7TMR-HDED PF07697.6 gi|20092380|ref|NP_618455.1| - 0.013 15.1 0.8 2.2 7.9 0.1 2.5 2 0 0 2 2 2 0 7TM-HD extracellular Glyco_hydro_31 PF01055.21 gi|20092380|ref|NP_618455.1| - 0.019 13.7 0.1 0.019 13.7 0.0 1.4 2 0 0 2 2 2 0 Glycosyl hydrolases family 31 GST_C PF00043.20 gi|20092380|ref|NP_618455.1| - 0.43 10.6 3.0 19 5.2 0.0 3.8 3 1 1 4 4 4 0 Glutathione S-transferase, C-terminal domain AAA_14 PF13173.1 gi|20092381|ref|NP_618456.1| - 2e-31 108.5 0.1 4.3e-31 107.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|20092381|ref|NP_618456.1| - 1.2e-07 31.7 0.0 3.9e-07 30.1 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|20092381|ref|NP_618456.1| - 1.3e-05 25.0 2.4 0.017 14.8 0.1 3.2 2 1 1 3 3 3 2 Archaeal ATPase MobB PF03205.9 gi|20092381|ref|NP_618456.1| - 0.00067 19.3 0.1 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Hjc PF01870.13 gi|20092381|ref|NP_618456.1| - 0.0019 17.7 0.0 0.0059 16.1 0.0 1.8 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AAA_16 PF13191.1 gi|20092381|ref|NP_618456.1| - 0.0049 16.8 0.0 0.031 14.2 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|20092381|ref|NP_618456.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain HTH_11 PF08279.7 gi|20092381|ref|NP_618456.1| - 0.033 13.8 0.0 0.086 12.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain NERD PF08378.6 gi|20092381|ref|NP_618456.1| - 0.034 14.3 0.0 0.073 13.3 0.0 1.6 1 0 0 1 1 1 0 Nuclease-related domain 6PF2K PF01591.13 gi|20092381|ref|NP_618456.1| - 0.071 12.1 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DUF463 PF04317.7 gi|20092381|ref|NP_618456.1| - 0.072 11.6 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 ATP-synt_ab PF00006.20 gi|20092381|ref|NP_618456.1| - 0.08 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain HTH_Mga PF08280.6 gi|20092381|ref|NP_618456.1| - 0.098 12.4 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.1 gi|20092381|ref|NP_618456.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Methylase_S PF01420.14 gi|20092382|ref|NP_618457.1| - 4.6e-09 36.4 0.2 6e-09 36.0 0.2 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Homeobox_KN PF05920.6 gi|20092382|ref|NP_618457.1| - 0.17 11.5 0.4 2.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Homeobox KN domain 2TM PF13239.1 gi|20092383|ref|NP_618458.1| - 0.027 14.5 0.9 0.034 14.2 0.6 1.2 1 0 0 1 1 1 0 2TM domain A2M_recep PF07677.9 gi|20092384|ref|NP_618459.1| - 0.03 14.4 0.1 0.044 13.9 0.1 1.2 1 0 0 1 1 1 0 A-macroglobulin receptor DUF3387 PF11867.3 gi|20092385|ref|NP_618460.1| - 1.4e-25 89.9 0.1 1.5e-25 89.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) HK97-gp10_like PF04883.7 gi|20092385|ref|NP_618460.1| - 0.061 14.2 0.5 0.081 13.8 0.3 1.3 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component ABC_tran PF00005.22 gi|20092386|ref|NP_618461.1| - 4.4e-33 114.4 0.0 6.3e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092386|ref|NP_618461.1| - 1.7e-15 57.7 0.0 1.2e-08 35.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20092386|ref|NP_618461.1| - 1.4e-08 34.2 0.0 2.3e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|20092386|ref|NP_618461.1| - 3.2e-06 27.4 0.0 0.00025 21.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20092386|ref|NP_618461.1| - 1.3e-05 24.4 0.0 0.05 12.6 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|20092386|ref|NP_618461.1| - 1.9e-05 24.8 0.1 6.1e-05 23.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|20092386|ref|NP_618461.1| - 0.00012 22.0 0.2 0.00039 20.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20092386|ref|NP_618461.1| - 0.00014 21.9 0.0 0.00027 20.9 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|20092386|ref|NP_618461.1| - 0.00015 21.6 0.2 0.0018 18.1 0.1 2.5 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|20092386|ref|NP_618461.1| - 0.00018 20.9 0.1 0.054 12.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20092386|ref|NP_618461.1| - 0.00033 20.1 0.1 0.0006 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|20092386|ref|NP_618461.1| - 0.0011 19.7 0.6 0.0024 18.6 0.4 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|20092386|ref|NP_618461.1| - 0.0031 16.9 0.0 0.053 12.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF258 PF03193.11 gi|20092386|ref|NP_618461.1| - 0.0031 16.7 0.0 0.0063 15.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|20092386|ref|NP_618461.1| - 0.0032 16.9 0.0 0.0064 15.9 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|20092386|ref|NP_618461.1| - 0.0038 17.5 0.6 0.01 16.2 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20092386|ref|NP_618461.1| - 0.004 16.6 0.0 0.07 12.5 0.0 2.0 1 1 0 2 2 2 1 AAA-like domain cobW PF02492.14 gi|20092386|ref|NP_618461.1| - 0.0079 15.6 0.1 0.1 11.9 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|20092386|ref|NP_618461.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.15 gi|20092386|ref|NP_618461.1| - 0.017 13.8 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MobB PF03205.9 gi|20092386|ref|NP_618461.1| - 0.017 14.8 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|20092386|ref|NP_618461.1| - 0.032 13.9 0.1 0.35 10.5 0.0 2.2 1 1 0 2 2 2 0 NTPase NB-ARC PF00931.17 gi|20092386|ref|NP_618461.1| - 0.034 13.0 0.0 0.094 11.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.1 gi|20092386|ref|NP_618461.1| - 0.039 13.8 0.1 0.061 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|20092386|ref|NP_618461.1| - 0.04 13.5 0.1 0.1 12.2 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF3584 PF12128.3 gi|20092386|ref|NP_618461.1| - 0.045 11.0 0.0 0.061 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) KaiC PF06745.8 gi|20092386|ref|NP_618461.1| - 0.046 12.8 0.1 0.37 9.8 0.0 2.0 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|20092386|ref|NP_618461.1| - 0.051 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|20092386|ref|NP_618461.1| - 0.053 14.0 0.0 0.099 13.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|20092386|ref|NP_618461.1| - 0.1 12.5 0.1 0.3 11.0 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Pox_A32 PF04665.7 gi|20092386|ref|NP_618461.1| - 0.11 11.8 0.8 0.22 10.7 0.2 1.9 2 1 0 2 2 2 0 Poxvirus A32 protein T2SE PF00437.15 gi|20092386|ref|NP_618461.1| - 0.12 11.2 0.1 0.24 10.2 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|20092386|ref|NP_618461.1| - 0.12 12.2 0.1 0.3 10.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|20092386|ref|NP_618461.1| - 0.17 11.6 0.7 0.78 9.5 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 FtsX PF02687.16 gi|20092387|ref|NP_618462.1| - 2e-15 56.5 14.3 2e-15 56.5 9.9 2.2 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|20092387|ref|NP_618462.1| - 1.7e-12 47.4 1.8 1.7e-12 47.4 1.3 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain CARDB PF07705.6 gi|20092388|ref|NP_618463.1| - 7e-09 35.6 0.5 0.00037 20.4 0.0 2.9 3 0 0 3 3 3 2 CARDB Rib PF08428.5 gi|20092388|ref|NP_618463.1| - 0.0018 18.0 0.3 5.7 6.7 0.0 3.6 3 0 0 3 3 3 1 Rib/alpha-like repeat DUF11 PF01345.13 gi|20092388|ref|NP_618463.1| - 0.0096 15.9 0.0 0.85 9.7 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF11 Filamin PF00630.14 gi|20092388|ref|NP_618463.1| - 0.059 13.9 0.0 0.22 12.1 0.0 2.0 1 0 0 1 1 1 0 Filamin/ABP280 repeat NPCBM_assoc PF10633.4 gi|20092388|ref|NP_618463.1| - 0.087 12.8 0.0 13 5.9 0.0 3.3 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase TetR_N PF00440.18 gi|20092389|ref|NP_618464.1| - 4.4e-15 55.0 0.1 9.9e-15 53.9 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HSP20 PF00011.16 gi|20092390|ref|NP_618465.1| - 4.9e-21 74.4 0.2 6.1e-21 74.2 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family SnoaL_2 PF12680.2 gi|20092390|ref|NP_618465.1| - 0.032 14.6 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like domain CS PF04969.11 gi|20092390|ref|NP_618465.1| - 0.054 14.0 0.1 0.25 11.8 0.1 1.9 1 1 0 1 1 1 0 CS domain DUF4521 PF15021.1 gi|20092390|ref|NP_618465.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) MFS_1 PF07690.11 gi|20092391|ref|NP_618466.1| - 1.4e-62 211.4 45.0 8.4e-36 123.3 14.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|20092391|ref|NP_618466.1| - 2.9e-11 42.5 35.8 1.8e-07 30.0 8.7 3.9 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|20092391|ref|NP_618466.1| - 7.9e-08 31.1 25.1 2.4e-07 29.5 15.3 3.1 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|20092391|ref|NP_618466.1| - 0.00029 19.0 16.0 0.0012 17.0 11.1 1.8 1 1 0 1 1 1 1 Transmembrane secretion effector DUF4161 PF13722.1 gi|20092391|ref|NP_618466.1| - 0.039 14.2 2.6 0.21 11.9 0.0 3.0 3 0 0 3 3 3 0 C-terminal domain on CstA (DUF4161) DUF2244 PF10003.4 gi|20092391|ref|NP_618466.1| - 0.045 13.1 0.5 0.045 13.1 0.4 2.7 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) DUF4131 PF13567.1 gi|20092391|ref|NP_618466.1| - 6.2 6.1 14.3 1.7 8.0 1.0 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF4131) AMMECR1 PF01871.12 gi|20092392|ref|NP_618467.1| - 7.1e-57 191.2 0.0 8.6e-57 190.9 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 HAP2-GCS1 PF10699.4 gi|20092392|ref|NP_618467.1| - 0.029 14.3 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 Male gamete fusion factor PGK PF00162.14 gi|20092393|ref|NP_618468.1| - 7.2e-120 400.0 1.3 8.2e-120 399.8 0.9 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase UDG PF03167.14 gi|20092394|ref|NP_618469.1| - 6.4e-39 132.8 0.0 8.2e-39 132.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HSP20 PF00011.16 gi|20092395|ref|NP_618470.1| - 1.7e-05 24.5 0.8 0.00013 21.7 0.5 1.9 1 1 0 1 1 1 1 Hsp20/alpha crystallin family Fer4_6 PF12837.2 gi|20092396|ref|NP_618471.1| - 2.2e-12 46.2 13.3 3.9e-07 29.6 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20092396|ref|NP_618471.1| - 6.6e-12 44.5 14.7 6.1e-08 31.9 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20092396|ref|NP_618471.1| - 7.2e-11 41.7 9.0 8.9e-11 41.4 6.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20092396|ref|NP_618471.1| - 6.8e-10 38.2 11.3 3e-05 23.6 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20092396|ref|NP_618471.1| - 8.9e-10 38.8 11.0 1.2e-09 38.3 7.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092396|ref|NP_618471.1| - 1.6e-09 37.8 10.8 1.9e-09 37.6 7.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20092396|ref|NP_618471.1| - 1.1e-07 31.5 8.7 1.6e-07 31.0 6.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092396|ref|NP_618471.1| - 2.2e-06 28.2 8.2 0.00029 21.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|20092396|ref|NP_618471.1| - 6e-06 26.5 5.9 0.0017 18.7 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092396|ref|NP_618471.1| - 1.1e-05 25.3 9.6 3.1e-05 23.9 6.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092396|ref|NP_618471.1| - 1.6e-05 24.8 10.8 0.00068 19.7 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20092396|ref|NP_618471.1| - 4.8e-05 23.8 11.9 0.0044 17.5 8.2 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|20092396|ref|NP_618471.1| - 4.9e-05 23.5 11.1 0.0011 19.3 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20092396|ref|NP_618471.1| - 0.00047 20.4 14.3 0.0053 17.1 9.9 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20092396|ref|NP_618471.1| - 0.0015 18.9 15.1 0.022 15.2 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|20092396|ref|NP_618471.1| - 0.002 17.9 5.0 0.014 15.2 3.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Rep_fac-A_C PF08646.5 gi|20092396|ref|NP_618471.1| - 0.31 10.7 3.8 0.32 10.7 2.6 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Toxin_2 PF00451.14 gi|20092396|ref|NP_618471.1| - 0.31 11.1 7.9 1.2 9.3 0.1 2.2 2 0 0 2 2 2 0 Scorpion short toxin, BmKK2 Fer4_19 PF06902.6 gi|20092396|ref|NP_618471.1| - 0.78 9.6 6.9 1.7 8.5 4.8 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster AFP PF02420.10 gi|20092396|ref|NP_618471.1| - 7.5 7.0 6.8 8.7 6.8 1.7 3.1 3 1 0 3 3 2 0 Insect antifreeze protein repeat Fer4_10 PF13237.1 gi|20092397|ref|NP_618472.1| - 7.6e-13 48.0 21.5 8.1e-10 38.3 6.4 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20092397|ref|NP_618472.1| - 1.1e-12 46.9 13.3 5.4e-08 32.1 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20092397|ref|NP_618472.1| - 6.5e-12 45.6 16.5 9.2e-10 38.7 7.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092397|ref|NP_618472.1| - 4.8e-11 42.0 12.8 3.6e-05 23.4 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092397|ref|NP_618472.1| - 6.3e-10 38.7 6.2 8.1e-10 38.4 4.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092397|ref|NP_618472.1| - 6.8e-10 39.0 8.8 1.2e-09 38.3 6.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20092397|ref|NP_618472.1| - 2.4e-08 33.4 11.1 0.00039 20.1 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20092397|ref|NP_618472.1| - 9.2e-08 32.4 4.0 0.00086 19.6 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092397|ref|NP_618472.1| - 1.9e-07 31.7 6.3 8.3e-05 23.2 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20092397|ref|NP_618472.1| - 4.2e-07 29.8 14.6 4.6e-06 26.5 6.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092397|ref|NP_618472.1| - 6.1e-06 26.1 13.9 0.00018 21.5 3.4 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20092397|ref|NP_618472.1| - 4.5e-05 23.7 8.9 0.0041 17.4 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20092397|ref|NP_618472.1| - 0.00011 22.4 11.7 0.002 18.5 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|20092397|ref|NP_618472.1| - 0.00069 19.4 2.8 0.00088 19.1 1.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20092397|ref|NP_618472.1| - 0.0069 16.7 12.4 0.015 15.7 8.6 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|20092397|ref|NP_618472.1| - 0.011 16.2 13.0 0.055 14.0 9.0 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Toxin_2 PF00451.14 gi|20092397|ref|NP_618472.1| - 0.42 10.7 8.7 0.45 10.6 0.2 2.2 2 0 0 2 2 2 0 Scorpion short toxin, BmKK2 HTH_20 PF12840.2 gi|20092398|ref|NP_618473.1| - 4.1e-14 52.1 0.2 9e-14 51.0 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20092398|ref|NP_618473.1| - 2.3e-06 26.8 1.7 1.1e-05 24.7 1.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20092398|ref|NP_618473.1| - 0.0002 20.9 0.5 0.00039 20.0 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|20092398|ref|NP_618473.1| - 0.00068 19.2 0.1 0.0015 18.1 0.1 1.6 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|20092398|ref|NP_618473.1| - 0.0027 17.1 0.1 0.004 16.6 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|20092398|ref|NP_618473.1| - 0.0029 17.2 0.4 0.0065 16.1 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|20092398|ref|NP_618473.1| - 0.0066 16.0 0.6 0.024 14.2 0.2 1.9 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.1 gi|20092398|ref|NP_618473.1| - 0.011 15.8 0.3 0.025 14.5 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|20092398|ref|NP_618473.1| - 0.011 15.5 0.2 0.031 14.1 0.1 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|20092398|ref|NP_618473.1| - 0.049 13.5 0.1 0.073 12.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|20092398|ref|NP_618473.1| - 0.055 13.5 0.4 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_30 PF13556.1 gi|20092398|ref|NP_618473.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR PF01047.17 gi|20092398|ref|NP_618473.1| - 0.098 12.3 0.3 0.2 11.3 0.2 1.5 1 0 0 1 1 1 0 MarR family S-layer PF07752.6 gi|20092399|ref|NP_618474.1| - 6e-64 215.7 11.5 1.9e-33 115.7 1.7 2.1 1 1 1 2 2 2 2 S-layer protein Imm33 PF15580.1 gi|20092399|ref|NP_618474.1| - 0.094 12.2 4.9 3.3 7.2 0.3 2.4 2 0 0 2 2 2 0 Immunity protein 33 HEAT_2 PF13646.1 gi|20092400|ref|NP_618475.1| - 2.5e-85 280.8 23.1 6.1e-22 77.7 0.5 7.7 2 2 6 8 8 8 8 HEAT repeats HEAT_PBS PF03130.11 gi|20092400|ref|NP_618475.1| - 4.5e-52 169.2 21.0 1.3e-05 25.1 0.1 12.0 11 1 0 11 11 11 11 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|20092400|ref|NP_618475.1| - 4.5e-41 135.2 6.9 0.00022 21.0 0.0 11.6 14 0 0 14 14 12 8 HEAT repeat HEAT_EZ PF13513.1 gi|20092400|ref|NP_618475.1| - 1.9e-35 120.4 20.1 0.0009 19.6 0.0 11.2 10 3 3 13 13 13 8 HEAT-like repeat Arm PF00514.18 gi|20092400|ref|NP_618475.1| - 7e-21 73.2 0.7 0.37 10.6 0.0 10.6 9 2 3 12 12 12 5 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|20092400|ref|NP_618475.1| - 2.8e-08 32.5 0.0 3e-05 22.5 0.0 2.6 1 1 1 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.2 gi|20092400|ref|NP_618475.1| - 4.2e-06 26.7 0.0 0.33 10.7 0.0 4.6 3 1 1 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|20092400|ref|NP_618475.1| - 2.2e-05 24.7 0.0 78 3.7 0.0 6.6 3 2 5 8 8 8 0 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|20092400|ref|NP_618475.1| - 0.00062 19.6 0.2 35 4.1 0.0 5.2 6 1 1 7 7 7 0 Aconitate B N-terminal domain Cohesin_HEAT PF12765.2 gi|20092400|ref|NP_618475.1| - 0.0072 16.2 0.3 3.8 7.5 0.1 3.3 3 0 0 3 3 3 1 HEAT repeat associated with sister chromatid cohesion CLASP_N PF12348.3 gi|20092400|ref|NP_618475.1| - 0.0075 15.6 0.0 11 5.2 0.0 3.4 3 0 0 3 3 3 1 CLASP N terminal Vitellogenin_N PF01347.17 gi|20092400|ref|NP_618475.1| - 0.015 13.5 0.0 11 4.1 0.0 3.4 3 1 2 5 5 5 0 Lipoprotein amino terminal region DUF3426 PF11906.3 gi|20092401|ref|NP_618476.1| - 0.0092 15.6 0.3 0.038 13.6 0.0 2.1 2 1 1 3 3 3 1 Protein of unknown function (DUF3426) MarR_2 PF12802.2 gi|20092402|ref|NP_618477.1| - 0.00029 20.4 0.0 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|20092402|ref|NP_618477.1| - 0.0024 17.5 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20092402|ref|NP_618477.1| - 0.0094 15.3 0.3 0.016 14.5 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20092402|ref|NP_618477.1| - 0.014 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|20092402|ref|NP_618477.1| - 0.041 13.6 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|20092402|ref|NP_618477.1| - 0.11 12.0 0.4 0.18 11.3 0.3 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.15 gi|20092402|ref|NP_618477.1| - 0.13 12.0 0.1 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family ATP-grasp_5 PF13549.1 gi|20092403|ref|NP_618478.1| - 2.1e-78 262.5 0.2 2.4e-78 262.3 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|20092403|ref|NP_618478.1| - 0.00063 19.5 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|20092403|ref|NP_618478.1| - 0.00063 19.1 0.3 0.0018 17.6 0.2 1.8 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|20092403|ref|NP_618478.1| - 0.014 14.6 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain priB_priC PF07445.7 gi|20092404|ref|NP_618479.1| - 0.11 11.9 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Primosomal replication protein priB and priC Peptidase_M14 PF00246.19 gi|20092405|ref|NP_618480.1| - 1.8e-75 254.1 0.2 2.2e-75 253.8 0.1 1.1 1 0 0 1 1 1 1 Zinc carboxypeptidase Acetate_kinase PF00871.12 gi|20092406|ref|NP_618481.1| - 7.2e-176 584.4 0.4 8.1e-176 584.2 0.3 1.0 1 0 0 1 1 1 1 Acetokinase family PTA_PTB PF01515.14 gi|20092407|ref|NP_618482.1| - 7.9e-127 422.7 5.4 9e-127 422.5 3.8 1.0 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase DUF3663 PF12404.3 gi|20092407|ref|NP_618482.1| - 0.017 14.9 0.2 0.056 13.2 0.0 1.9 2 0 0 2 2 2 0 Peptidase FMN_red PF03358.10 gi|20092408|ref|NP_618483.1| - 5.5e-39 133.1 0.0 6.9e-39 132.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20092408|ref|NP_618483.1| - 4.4e-14 52.4 0.0 5.4e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.20 gi|20092408|ref|NP_618483.1| - 0.001 19.1 0.0 0.035 14.0 0.0 2.1 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|20092408|ref|NP_618483.1| - 0.0033 17.4 0.0 0.0046 16.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Voltage_CLC PF00654.15 gi|20092409|ref|NP_618484.1| - 1.7e-86 290.4 37.3 5.7e-86 288.7 23.8 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|20092409|ref|NP_618484.1| - 1.9e-24 85.1 0.6 4.1e-11 42.4 0.0 2.5 2 0 0 2 2 2 2 CBS domain AHSA1 PF08327.6 gi|20092410|ref|NP_618485.1| - 4.5e-25 88.1 0.2 5.3e-25 87.9 0.2 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.4 gi|20092410|ref|NP_618485.1| - 0.0028 17.8 0.0 0.0035 17.5 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Abhydrolase_6 PF12697.2 gi|20092411|ref|NP_618486.1| - 7.7e-32 110.9 0.7 9.4e-32 110.7 0.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|20092411|ref|NP_618486.1| - 1.3e-11 44.4 0.1 2.6e-11 43.4 0.1 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20092411|ref|NP_618486.1| - 3.9e-10 39.6 0.9 6.2e-10 39.0 0.6 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|20092411|ref|NP_618486.1| - 6e-09 36.4 0.0 8.7e-09 35.9 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain Ndr PF03096.9 gi|20092411|ref|NP_618486.1| - 1e-05 24.2 0.0 1.4e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Ndr family Esterase PF00756.15 gi|20092411|ref|NP_618486.1| - 0.03 13.7 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative esterase DLH PF01738.13 gi|20092411|ref|NP_618486.1| - 0.073 12.3 0.0 0.3 10.3 0.0 1.9 2 0 0 2 2 2 0 Dienelactone hydrolase family HEAT_2 PF13646.1 gi|20092412|ref|NP_618487.1| - 1.9e-163 531.2 62.3 4.2e-19 68.6 0.1 9.7 1 1 13 14 14 14 14 HEAT repeats HEAT_PBS PF03130.11 gi|20092412|ref|NP_618487.1| - 1.4e-64 208.0 41.8 0.00043 20.4 0.0 19.1 19 0 0 19 19 19 12 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|20092412|ref|NP_618487.1| - 6.6e-50 162.7 8.0 0.00082 19.2 0.0 16.8 17 0 0 17 17 17 10 HEAT repeat HEAT_EZ PF13513.1 gi|20092412|ref|NP_618487.1| - 3.1e-45 151.6 31.8 2.2e-05 24.8 0.0 13.3 8 4 5 13 13 13 12 HEAT-like repeat Adaptin_N PF01602.15 gi|20092412|ref|NP_618487.1| - 1.5e-14 53.2 0.3 0.00036 19.0 0.0 6.2 1 1 2 6 6 6 4 Adaptin N terminal region Arm PF00514.18 gi|20092412|ref|NP_618487.1| - 5.5e-14 51.3 0.1 0.78 9.6 0.0 11.6 14 1 1 15 15 14 1 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|20092412|ref|NP_618487.1| - 2.5e-12 47.0 0.0 9 6.7 0.0 10.2 5 3 5 11 11 11 0 Vacuolar 14 Fab1-binding region NACHT PF05729.7 gi|20092412|ref|NP_618487.1| - 6.6e-11 42.1 0.0 1.5e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain DUF2435 PF10363.4 gi|20092412|ref|NP_618487.1| - 5.9e-08 32.5 0.0 1.9 8.4 0.0 6.2 5 1 1 6 6 6 2 Protein of unknown function (DUF2435) Aconitase_B_N PF11791.3 gi|20092412|ref|NP_618487.1| - 3.3e-07 30.2 5.5 6.8 6.4 0.0 7.4 5 2 1 8 8 8 0 Aconitate B N-terminal domain Cnd1 PF12717.2 gi|20092412|ref|NP_618487.1| - 4e-06 26.7 3.0 0.15 11.8 0.0 6.9 4 2 1 6 6 6 1 non-SMC mitotic condensation complex subunit 1 Cnd3 PF12719.2 gi|20092412|ref|NP_618487.1| - 0.00077 18.5 0.2 15 4.4 0.0 4.4 4 1 0 4 4 4 0 Nuclear condensing complex subunits, C-term domain AAA_22 PF13401.1 gi|20092412|ref|NP_618487.1| - 0.0075 16.4 0.2 0.046 13.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain DUF3385 PF11865.3 gi|20092412|ref|NP_618487.1| - 0.024 14.5 2.8 20 5.0 0.0 5.7 7 2 1 9 9 8 0 Domain of unknown function (DUF3385) DUF2019 PF09450.5 gi|20092412|ref|NP_618487.1| - 0.025 14.4 4.8 22 4.9 0.0 5.1 4 2 1 5 5 4 0 Domain of unknown function (DUF2019) AAA_30 PF13604.1 gi|20092412|ref|NP_618487.1| - 0.029 13.9 0.1 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.4 gi|20092412|ref|NP_618487.1| - 0.048 12.5 0.0 0.58 9.0 0.0 2.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_24 PF13479.1 gi|20092412|ref|NP_618487.1| - 0.051 13.1 0.1 0.095 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Vitellogenin_N PF01347.17 gi|20092412|ref|NP_618487.1| - 0.06 11.5 0.5 10 4.2 0.0 3.2 4 0 0 4 4 4 0 Lipoprotein amino terminal region Pox_A32 PF04665.7 gi|20092412|ref|NP_618487.1| - 0.063 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein HTH_8 PF02954.14 gi|20092412|ref|NP_618487.1| - 0.17 11.4 6.0 10 5.7 0.1 5.2 5 0 0 5 5 5 0 Bacterial regulatory protein, Fis family AAA_16 PF13191.1 gi|20092412|ref|NP_618487.1| - 0.64 9.9 5.8 1.2 9.0 0.0 3.6 2 1 0 2 2 2 0 AAA ATPase domain URO-D PF01208.12 gi|20092413|ref|NP_618488.1| - 1.9e-83 280.2 0.0 2.2e-83 280.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ThiI PF02568.9 gi|20092414|ref|NP_618489.1| - 8.8e-05 22.0 0.2 0.00017 21.0 0.0 1.6 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|20092414|ref|NP_618489.1| - 0.016 14.7 0.0 0.035 13.5 0.0 1.6 1 0 0 1 1 1 0 PP-loop family NAD_synthase PF02540.12 gi|20092414|ref|NP_618489.1| - 0.022 13.6 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|20092414|ref|NP_618489.1| - 0.025 13.1 0.0 0.038 12.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|20092414|ref|NP_618489.1| - 0.053 12.8 0.0 0.095 12.0 0.0 1.4 1 0 0 1 1 1 0 ATP-binding region QueC PF06508.8 gi|20092414|ref|NP_618489.1| - 0.055 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC SurA_N PF09312.6 gi|20092414|ref|NP_618489.1| - 0.094 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 SurA N-terminal domain Exo_endo_phos PF03372.18 gi|20092415|ref|NP_618490.1| - 3e-07 30.6 0.7 6.8e-07 29.4 0.5 1.6 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|20092415|ref|NP_618490.1| - 1.8e-06 27.5 0.1 2.7e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Cupin_2 PF07883.6 gi|20092417|ref|NP_618492.1| - 1.1e-18 66.4 0.0 1.7e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|20092417|ref|NP_618492.1| - 7.5e-08 32.1 0.1 1.2e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|20092417|ref|NP_618492.1| - 3.8e-06 26.3 0.0 4.7e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|20092417|ref|NP_618492.1| - 5.5e-06 26.0 0.0 6.8e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase GPI PF06560.6 gi|20092417|ref|NP_618492.1| - 8.5e-05 21.6 0.0 0.00013 21.0 0.0 1.2 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_3 PF05899.7 gi|20092417|ref|NP_618492.1| - 0.00084 18.6 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Auxin_BP PF02041.11 gi|20092417|ref|NP_618492.1| - 0.0016 17.8 0.0 0.004 16.6 0.0 1.6 1 1 0 1 1 1 1 Auxin binding protein Ectoine_synth PF06339.7 gi|20092417|ref|NP_618492.1| - 0.0074 16.2 0.0 0.0098 15.8 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_6 PF12852.2 gi|20092417|ref|NP_618492.1| - 0.098 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Cupin Thioredoxin_7 PF13899.1 gi|20092418|ref|NP_618493.1| - 0.1 12.6 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin-like MC1 PF05854.6 gi|20092419|ref|NP_618494.1| - 9e-47 157.0 1.7 9.8e-47 156.8 1.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 PHP_C PF13263.1 gi|20092421|ref|NP_618496.1| - 1.6e-21 75.4 0.1 3.7e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|20092421|ref|NP_618496.1| - 1.1e-14 54.6 0.0 2.2e-14 53.6 0.0 1.6 1 1 0 1 1 1 1 PHP domain MMR_HSR1 PF01926.18 gi|20092422|ref|NP_618497.1| - 2.3e-20 72.6 0.0 5.1e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|20092422|ref|NP_618497.1| - 9.6e-08 31.6 0.1 3.1e-05 23.5 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|20092422|ref|NP_618497.1| - 4.3e-05 22.8 0.3 0.00059 19.1 0.2 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B cobW PF02492.14 gi|20092422|ref|NP_618497.1| - 9.8e-05 21.8 0.5 0.0048 16.3 0.4 3.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP-bdg_N PF13167.1 gi|20092422|ref|NP_618497.1| - 0.00035 20.6 0.1 0.00083 19.4 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal NOG1 PF06858.9 gi|20092422|ref|NP_618497.1| - 0.0058 16.4 0.4 0.059 13.2 0.0 2.7 3 0 0 3 3 3 1 Nucleolar GTP-binding protein 1 (NOG1) Dynamin_N PF00350.18 gi|20092422|ref|NP_618497.1| - 0.0086 15.9 0.2 0.045 13.5 0.0 2.1 2 1 0 3 3 3 1 Dynamin family Arf PF00025.16 gi|20092422|ref|NP_618497.1| - 0.013 14.7 0.1 0.042 13.1 0.1 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|20092422|ref|NP_618497.1| - 0.016 14.6 0.0 2.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|20092422|ref|NP_618497.1| - 0.022 13.9 0.0 0.11 11.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|20092422|ref|NP_618497.1| - 0.024 14.1 0.1 0.14 11.6 0.0 2.0 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein BRO1 PF03097.13 gi|20092422|ref|NP_618497.1| - 0.03 13.0 0.0 0.042 12.5 0.0 1.1 1 0 0 1 1 1 0 BRO1-like domain MobB PF03205.9 gi|20092422|ref|NP_618497.1| - 0.048 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|20092422|ref|NP_618497.1| - 0.049 13.9 0.0 0.14 12.4 0.0 1.9 1 1 1 2 2 2 0 ABC transporter AAA_29 PF13555.1 gi|20092422|ref|NP_618497.1| - 0.079 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fzo_mitofusin PF04799.8 gi|20092422|ref|NP_618497.1| - 0.086 12.2 0.1 0.21 10.9 0.0 1.6 1 1 0 1 1 1 0 fzo-like conserved region AAA_23 PF13476.1 gi|20092422|ref|NP_618497.1| - 0.32 11.3 6.3 0.59 10.4 0.2 2.4 1 1 1 2 2 2 0 AAA domain DUF2209 PF09974.4 gi|20092423|ref|NP_618498.1| - 2.4e-59 198.9 0.0 2.7e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DUF1848 PF08902.6 gi|20092423|ref|NP_618498.1| - 0.026 14.0 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) Methyltransf_7 PF03492.10 gi|20092423|ref|NP_618498.1| - 0.036 12.8 0.0 0.051 12.3 0.0 1.1 1 0 0 1 1 1 0 SAM dependent carboxyl methyltransferase tRNA_int_endo PF01974.12 gi|20092424|ref|NP_618499.1| - 2e-47 158.8 2.2 3.1e-24 84.5 0.3 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|20092424|ref|NP_618499.1| - 6.1e-41 137.8 2.3 1.4e-19 69.3 0.0 2.6 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain HHH_6 PF14579.1 gi|20092425|ref|NP_618500.1| - 0.034 14.1 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif GATase_3 PF07685.9 gi|20092426|ref|NP_618501.1| - 4.5e-34 117.3 0.2 6.7e-34 116.7 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|20092426|ref|NP_618501.1| - 7e-23 81.0 0.0 1.3e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|20092426|ref|NP_618501.1| - 4.9e-18 65.4 0.1 3e-15 56.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF2620 PF10941.3 gi|20092426|ref|NP_618501.1| - 0.13 12.3 0.1 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF2620 MipZ PF09140.6 gi|20092426|ref|NP_618501.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ Fer4_NifH PF00142.13 gi|20092427|ref|NP_618502.1| - 1.1e-88 297.0 2.3 1.3e-88 296.7 1.6 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|20092427|ref|NP_618502.1| - 9.4e-11 41.4 0.0 1.3e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20092427|ref|NP_618502.1| - 1.8e-08 33.8 1.4 1.4e-07 30.8 0.4 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|20092427|ref|NP_618502.1| - 8.7e-06 25.7 0.0 2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|20092427|ref|NP_618502.1| - 8.6e-05 21.4 0.2 0.00014 20.7 0.1 1.2 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|20092427|ref|NP_618502.1| - 0.00021 20.4 0.2 0.0063 15.6 0.0 2.4 3 0 0 3 3 3 1 ATPase MipZ AAA_10 PF12846.2 gi|20092427|ref|NP_618502.1| - 0.00059 19.3 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|20092427|ref|NP_618502.1| - 0.0011 18.9 0.1 0.035 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|20092427|ref|NP_618502.1| - 0.0028 17.1 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|20092427|ref|NP_618502.1| - 0.0061 15.9 0.2 0.0097 15.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|20092427|ref|NP_618502.1| - 0.0078 15.8 0.1 0.035 13.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20092427|ref|NP_618502.1| - 0.011 15.2 0.1 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|20092427|ref|NP_618502.1| - 0.013 14.4 0.3 0.021 13.6 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|20092427|ref|NP_618502.1| - 0.014 15.1 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|20092427|ref|NP_618502.1| - 0.017 15.2 0.0 0.038 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20092427|ref|NP_618502.1| - 0.024 14.3 0.1 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|20092427|ref|NP_618502.1| - 0.058 12.9 0.3 0.61 9.5 0.2 2.2 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|20092427|ref|NP_618502.1| - 0.1 12.7 0.1 0.48 10.6 0.0 2.2 2 1 0 2 2 2 0 RNA helicase Oxidored_nitro PF00148.14 gi|20092428|ref|NP_618503.1| - 2.3e-17 62.7 0.1 4.6e-17 61.7 0.0 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase GvpG PF05120.7 gi|20092428|ref|NP_618503.1| - 0.00033 20.3 0.1 0.00068 19.4 0.1 1.5 1 0 0 1 1 1 1 Gas vesicle protein G Mur_ligase_M PF08245.7 gi|20092430|ref|NP_618505.1| - 1.2e-06 28.7 0.0 3.4e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 Mur ligase middle domain CbiX PF01903.12 gi|20092431|ref|NP_618506.1| - 3.7e-29 100.9 0.0 4.3e-29 100.7 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|20092431|ref|NP_618506.1| - 8.8e-08 31.5 0.0 1e-07 31.3 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|20092431|ref|NP_618506.1| - 0.012 14.5 0.0 0.015 14.2 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase E1-E2_ATPase PF00122.15 gi|20092432|ref|NP_618507.1| - 3.7e-55 186.4 1.7 3.7e-55 186.4 1.2 2.5 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|20092432|ref|NP_618507.1| - 2.9e-48 165.1 2.0 3.7e-48 164.7 0.2 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20092432|ref|NP_618507.1| - 1.5e-17 64.3 0.0 4.9e-17 62.7 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20092432|ref|NP_618507.1| - 5.4e-07 29.4 0.3 0.004 16.7 0.0 2.8 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Transglut_core PF01841.14 gi|20092433|ref|NP_618508.1| - 4.6e-09 36.4 0.2 1.7e-08 34.6 0.0 1.8 1 1 1 2 2 2 1 Transglutaminase-like superfamily Peptidase_C71 PF12386.3 gi|20092433|ref|NP_618508.1| - 0.00061 19.2 0.8 0.00098 18.5 0.6 1.3 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.7 gi|20092433|ref|NP_618508.1| - 0.003 16.8 0.9 0.015 14.5 0.3 2.0 1 1 1 2 2 2 1 Transglutaminase-like domain DUF2002 PF09400.5 gi|20092433|ref|NP_618508.1| - 0.074 12.7 1.5 0.12 12.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2002) Peptidase_C93 PF06035.6 gi|20092433|ref|NP_618508.1| - 0.11 11.8 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP Abhydrolase_6 PF12697.2 gi|20092435|ref|NP_618510.1| - 4.6e-35 121.5 0.4 5.3e-35 121.3 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|20092435|ref|NP_618510.1| - 1e-16 61.1 0.0 5.5e-16 58.8 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|20092435|ref|NP_618510.1| - 3e-13 49.7 0.0 4e-12 46.0 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|20092435|ref|NP_618510.1| - 0.0022 17.7 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|20092435|ref|NP_618510.1| - 0.12 10.7 0.0 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF3972 PF13118.1 gi|20092436|ref|NP_618511.1| - 0.032 14.2 0.0 0.042 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3972) Borrelia_REV PF03978.8 gi|20092436|ref|NP_618511.1| - 0.07 12.8 0.3 0.11 12.1 0.2 1.4 1 1 0 1 1 1 0 Borrelia burgdorferi REV protein CTNNBL PF08216.6 gi|20092436|ref|NP_618511.1| - 0.39 10.3 3.1 6.9 6.3 0.2 2.1 1 1 1 2 2 2 0 Catenin-beta-like, Arm-motif containing nuclear Acyl_transf_3 PF01757.17 gi|20092438|ref|NP_618513.1| - 5.8e-25 87.8 41.7 1.2e-23 83.5 28.9 2.0 1 1 0 1 1 1 1 Acyltransferase family Pkr1 PF08636.5 gi|20092438|ref|NP_618513.1| - 0.046 13.7 5.9 0.94 9.5 0.3 3.1 2 0 0 2 2 2 0 ER protein Pkr1 S-layer PF07752.6 gi|20092439|ref|NP_618514.1| - 1.4e-189 627.4 28.5 6.2e-97 323.8 7.0 2.1 2 0 0 2 2 2 2 S-layer protein AFOR_N PF02730.10 gi|20092439|ref|NP_618514.1| - 0.00028 20.2 0.0 0.2 10.9 0.0 2.3 2 0 0 2 2 2 2 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF4353 PF14262.1 gi|20092439|ref|NP_618514.1| - 0.0011 18.2 0.2 1.3 8.2 0.0 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4353) Peripla_BP_2 PF01497.13 gi|20092440|ref|NP_618515.1| - 1.6e-26 92.9 0.0 2.1e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|20092441|ref|NP_618516.1| - 8.2e-92 307.3 30.7 9.3e-92 307.1 21.3 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20092441|ref|NP_618516.1| - 3.5e-06 26.5 13.8 3.5e-06 26.5 9.5 2.0 1 1 1 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|20092442|ref|NP_618517.1| - 3.7e-30 105.0 0.0 5e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092442|ref|NP_618517.1| - 7.1e-12 45.8 3.0 2.2e-05 24.6 0.4 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20092442|ref|NP_618517.1| - 1.9e-07 30.5 0.3 0.0013 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|20092442|ref|NP_618517.1| - 4.1e-06 27.2 0.2 5.4e-06 26.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20092442|ref|NP_618517.1| - 6e-05 22.3 0.5 0.0093 15.2 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|20092442|ref|NP_618517.1| - 7.4e-05 21.9 0.0 0.00012 21.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|20092442|ref|NP_618517.1| - 9.2e-05 21.8 0.0 0.00019 20.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|20092442|ref|NP_618517.1| - 0.00012 21.6 0.1 0.13 11.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|20092442|ref|NP_618517.1| - 0.00032 20.8 1.8 0.0051 16.9 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|20092442|ref|NP_618517.1| - 0.00044 20.1 0.2 0.013 15.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|20092442|ref|NP_618517.1| - 0.0013 18.4 0.2 0.0018 18.0 0.0 1.5 2 0 0 2 2 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|20092442|ref|NP_618517.1| - 0.0022 17.9 0.1 0.0039 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|20092442|ref|NP_618517.1| - 0.0024 17.0 0.0 0.0049 16.0 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|20092442|ref|NP_618517.1| - 0.0088 15.4 0.0 0.027 13.9 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|20092442|ref|NP_618517.1| - 0.011 15.4 0.0 0.38 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|20092442|ref|NP_618517.1| - 0.013 15.4 0.1 0.12 12.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|20092442|ref|NP_618517.1| - 0.019 14.5 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|20092442|ref|NP_618517.1| - 0.021 13.3 0.0 0.027 12.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein ABC_ATPase PF09818.4 gi|20092442|ref|NP_618517.1| - 0.023 13.3 0.1 4 5.9 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class T2SE PF00437.15 gi|20092442|ref|NP_618517.1| - 0.023 13.5 0.0 0.047 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|20092442|ref|NP_618517.1| - 0.028 13.8 0.0 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|20092442|ref|NP_618517.1| - 0.029 14.1 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|20092442|ref|NP_618517.1| - 0.051 13.2 0.5 0.087 12.4 0.1 1.5 2 0 0 2 2 1 0 NACHT domain MobB PF03205.9 gi|20092442|ref|NP_618517.1| - 0.057 13.1 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|20092442|ref|NP_618517.1| - 0.062 12.1 0.0 0.19 10.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.10 gi|20092442|ref|NP_618517.1| - 0.076 11.6 0.1 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_13 PF13166.1 gi|20092442|ref|NP_618517.1| - 0.093 11.1 0.0 7.3 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|20092442|ref|NP_618517.1| - 0.11 12.7 0.0 1.5 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|20092442|ref|NP_618517.1| - 0.12 11.1 0.0 0.23 10.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|20092442|ref|NP_618517.1| - 0.15 11.7 0.4 0.67 9.6 0.1 2.0 2 0 0 2 2 2 0 NTPase Cupin_2 PF07883.6 gi|20092443|ref|NP_618518.1| - 4.1e-15 55.0 0.0 5.5e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|20092443|ref|NP_618518.1| - 0.0011 18.6 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|20092443|ref|NP_618518.1| - 0.0013 18.7 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|20092443|ref|NP_618518.1| - 0.02 14.4 0.1 0.024 14.2 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase EutQ PF06249.7 gi|20092443|ref|NP_618518.1| - 0.09 12.3 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ RVT_1 PF00078.22 gi|20092445|ref|NP_618520.1| - 9.1e-41 139.5 0.0 2.3e-40 138.2 0.0 1.7 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.1 gi|20092445|ref|NP_618520.1| - 8.9e-28 96.1 2.7 1.9e-27 95.1 1.9 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.6 gi|20092445|ref|NP_618520.1| - 2.2e-24 85.0 5.1 7e-24 83.4 3.5 2.0 1 0 0 1 1 1 1 Group II intron, maturase-specific domain Menin PF05053.8 gi|20092445|ref|NP_618520.1| - 0.066 11.3 0.1 0.13 10.4 0.1 1.4 1 0 0 1 1 1 0 Menin Transposase_20 PF02371.11 gi|20092446|ref|NP_618521.1| - 1e-30 105.6 0.0 2.6e-30 104.3 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|20092446|ref|NP_618521.1| - 5.7e-26 90.9 0.0 9.9e-26 90.1 0.0 1.4 1 0 0 1 1 1 1 Transposase 5_3_exonuc PF01367.15 gi|20092446|ref|NP_618521.1| - 0.067 13.4 1.5 13 6.0 0.0 3.5 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold Metallophos PF00149.23 gi|20092447|ref|NP_618522.1| - 0.0062 15.9 0.1 0.01 15.2 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|20092447|ref|NP_618522.1| - 0.046 13.5 0.0 0.05 13.4 0.0 1.1 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain DUF3566 PF12089.3 gi|20092449|ref|NP_618524.1| - 0.0065 16.4 5.6 0.035 14.1 2.8 2.3 1 1 1 2 2 2 1 Transmembrane domain of unknown function (DUF3566) Gly-zipper_OmpA PF13436.1 gi|20092449|ref|NP_618524.1| - 0.91 9.2 3.8 1.6 8.4 2.6 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Amidinotransf PF02274.12 gi|20092452|ref|NP_618527.1| - 9.8e-19 67.5 0.0 1.8e-18 66.6 0.0 1.4 1 1 0 1 1 1 1 Amidinotransferase SpoU_sub_bind PF08032.7 gi|20092452|ref|NP_618527.1| - 0.06 13.5 0.0 1.5 9.0 0.0 2.8 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Hyphal_reg_CWP PF11765.3 gi|20092453|ref|NP_618528.1| - 0.04 12.6 0.1 0.052 12.3 0.1 1.1 1 0 0 1 1 1 0 Hyphally regulated cell wall protein N-terminal Acetyltransf_10 PF13673.1 gi|20092454|ref|NP_618529.1| - 2e-15 56.9 0.0 2.5e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20092454|ref|NP_618529.1| - 2.9e-13 49.7 0.0 7.9e-13 48.3 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20092454|ref|NP_618529.1| - 5e-10 39.2 0.0 1.3e-09 37.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|20092454|ref|NP_618529.1| - 3.9e-07 29.9 0.0 1.6e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20092454|ref|NP_618529.1| - 1.6e-06 28.2 0.0 1.9e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20092454|ref|NP_618529.1| - 1.2e-05 24.9 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|20092454|ref|NP_618529.1| - 3.2e-05 23.9 0.0 4.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20092454|ref|NP_618529.1| - 0.0031 17.3 0.0 0.1 12.4 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase TIR PF01582.15 gi|20092454|ref|NP_618529.1| - 0.1 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 TIR domain Ubie_methyltran PF01209.13 gi|20092455|ref|NP_618530.1| - 8.3e-19 67.6 0.1 1.1e-18 67.2 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|20092455|ref|NP_618530.1| - 8.4e-19 67.8 0.0 1.3e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092455|ref|NP_618530.1| - 1.1e-17 64.0 0.1 1.5e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092455|ref|NP_618530.1| - 4.4e-17 62.3 0.0 7.4e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092455|ref|NP_618530.1| - 1.8e-13 50.5 0.0 2.2e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092455|ref|NP_618530.1| - 9.8e-13 48.6 0.0 1.4e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092455|ref|NP_618530.1| - 3.9e-11 43.1 0.0 6.8e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20092455|ref|NP_618530.1| - 2.8e-07 29.8 0.0 3.4e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|20092455|ref|NP_618530.1| - 6.4e-06 26.1 0.0 1.1e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092455|ref|NP_618530.1| - 8.4e-06 25.2 0.1 1.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20092455|ref|NP_618530.1| - 3.1e-05 23.6 0.0 6.9e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|20092455|ref|NP_618530.1| - 0.00014 20.9 0.2 0.003 16.6 0.1 2.1 2 0 0 2 2 2 1 Putative methyltransferase RrnaAD PF00398.15 gi|20092455|ref|NP_618530.1| - 0.0017 17.4 0.1 0.0025 16.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_5 PF01795.14 gi|20092455|ref|NP_618530.1| - 0.0022 17.3 0.0 0.1 11.8 0.1 2.1 2 0 0 2 2 2 1 MraW methylase family PrmA PF06325.8 gi|20092455|ref|NP_618530.1| - 0.0023 17.1 0.0 0.0032 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|20092455|ref|NP_618530.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Hypothetical methyltransferase NodS PF05401.6 gi|20092455|ref|NP_618530.1| - 0.012 15.0 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) CheR PF01739.13 gi|20092455|ref|NP_618530.1| - 0.016 14.4 0.3 0.085 12.1 0.1 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF938 PF06080.7 gi|20092455|ref|NP_618530.1| - 0.022 14.3 0.0 0.1 12.1 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF938) ACP_syn_III_C PF08541.5 gi|20092455|ref|NP_618530.1| - 0.15 12.0 0.0 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal COX15-CtaA PF02628.10 gi|20092456|ref|NP_618531.1| - 0.0019 17.1 0.8 0.0027 16.6 0.5 1.2 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein DUF3353 PF11833.3 gi|20092456|ref|NP_618531.1| - 0.018 14.5 0.9 0.019 14.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF4131 PF13567.1 gi|20092456|ref|NP_618531.1| - 0.027 13.8 0.5 0.027 13.8 0.3 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) 5TM-5TMR_LYT PF07694.7 gi|20092456|ref|NP_618531.1| - 0.032 13.5 2.9 0.054 12.8 2.0 1.4 1 1 0 1 1 1 0 5TMR of 5TMR-LYT DUF3397 PF11877.3 gi|20092456|ref|NP_618531.1| - 0.054 13.4 2.4 0.074 13.0 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3397) Peptidase_A8 PF01252.13 gi|20092456|ref|NP_618531.1| - 0.069 12.7 2.2 0.13 11.8 1.6 1.5 1 1 0 1 1 1 0 Signal peptidase (SPase) II MFS_1 PF07690.11 gi|20092456|ref|NP_618531.1| - 0.07 11.8 2.5 0.1 11.3 1.8 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily Glucos_trans_II PF14264.1 gi|20092456|ref|NP_618531.1| - 0.077 11.9 4.7 0.086 11.8 3.2 1.1 1 0 0 1 1 1 0 Glucosyl transferase GtrII AA_permease_2 PF13520.1 gi|20092456|ref|NP_618531.1| - 0.12 10.9 3.3 0.13 10.7 2.3 1.2 1 0 0 1 1 1 0 Amino acid permease DUF1686 PF07937.6 gi|20092456|ref|NP_618531.1| - 0.13 11.8 0.5 0.46 10.0 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1686) Intg_mem_TP0381 PF09529.5 gi|20092456|ref|NP_618531.1| - 0.15 11.2 1.8 0.15 11.2 1.0 1.3 1 1 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) 2TM PF13239.1 gi|20092456|ref|NP_618531.1| - 0.21 11.6 2.9 0.21 11.6 0.9 1.7 1 1 1 2 2 2 0 2TM domain DUF1430 PF07242.6 gi|20092456|ref|NP_618531.1| - 0.21 11.6 4.1 1.3 9.1 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1430) BacA PF02673.13 gi|20092456|ref|NP_618531.1| - 0.21 10.7 2.6 1.2 8.3 1.8 1.9 1 1 0 1 1 1 0 Bacitracin resistance protein BacA CbiM PF01891.11 gi|20092456|ref|NP_618531.1| - 0.26 10.8 2.5 0.12 12.0 0.5 1.3 2 0 0 2 2 1 0 Cobalt uptake substrate-specific transmembrane region OST3_OST6 PF04756.8 gi|20092456|ref|NP_618531.1| - 0.39 10.2 3.9 0.23 10.9 1.0 1.7 2 0 0 2 2 2 0 OST3 / OST6 family O-antigen_lig PF13425.1 gi|20092456|ref|NP_618531.1| - 0.43 10.5 6.5 0.7 9.8 4.5 1.5 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF347 PF03988.7 gi|20092456|ref|NP_618531.1| - 0.53 10.2 0.0 0.53 10.2 0.0 2.5 3 0 0 3 3 3 0 Repeat of Unknown Function (DUF347) 7TMR-DISM_7TM PF07695.6 gi|20092456|ref|NP_618531.1| - 0.56 9.8 5.8 0.75 9.4 4.0 1.3 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF2929 PF11151.3 gi|20092456|ref|NP_618531.1| - 0.67 10.0 4.8 2.3 8.3 0.5 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) Na_Pi_cotrans PF02690.10 gi|20092456|ref|NP_618531.1| - 0.69 9.6 5.1 4.6 6.9 3.5 1.9 1 1 0 1 1 1 0 Na+/Pi-cotransporter SdpI PF13630.1 gi|20092456|ref|NP_618531.1| - 0.8 9.4 7.1 9.9 5.9 2.9 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family YesK PF14150.1 gi|20092456|ref|NP_618531.1| - 0.8 9.8 8.3 1.8 8.6 5.7 1.6 1 1 0 1 1 1 0 YesK-like protein LacY_symp PF01306.14 gi|20092456|ref|NP_618531.1| - 1.1 7.7 5.3 0.65 8.4 0.1 1.9 1 1 1 2 2 2 0 LacY proton/sugar symporter RseC_MucC PF04246.7 gi|20092456|ref|NP_618531.1| - 1.6 8.2 3.7 2.9 7.4 0.3 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Spore_YhaL PF14147.1 gi|20092456|ref|NP_618531.1| - 3.4 7.1 5.7 7.7 6.0 0.2 2.8 2 1 1 3 3 3 0 Sporulation protein YhaL PGA_cap PF09587.5 gi|20092457|ref|NP_618532.1| - 1.7e-69 233.9 0.0 2.1e-69 233.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap FMN_red PF03358.10 gi|20092458|ref|NP_618533.1| - 1.3e-24 86.4 0.0 1.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20092458|ref|NP_618533.1| - 9.4e-13 48.1 0.0 1e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_16 PF13484.1 gi|20092460|ref|NP_618535.1| - 3.6e-07 30.8 7.4 7.7e-07 29.7 5.1 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|20092460|ref|NP_618535.1| - 1.4e-05 24.8 8.3 4.4e-05 23.1 5.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092460|ref|NP_618535.1| - 8.5e-05 22.8 10.7 0.00059 20.1 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092460|ref|NP_618535.1| - 0.00048 20.0 6.5 0.01 15.8 4.7 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20092460|ref|NP_618535.1| - 0.0011 18.4 15.6 0.0072 15.8 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20092460|ref|NP_618535.1| - 0.0015 18.2 12.4 0.038 13.8 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20092460|ref|NP_618535.1| - 0.0051 17.0 12.3 0.026 14.8 3.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20092460|ref|NP_618535.1| - 0.007 16.7 6.2 0.12 12.8 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20092460|ref|NP_618535.1| - 0.018 15.3 7.3 0.13 12.6 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain FAM72 PF14976.1 gi|20092460|ref|NP_618535.1| - 0.018 14.8 1.5 3.9 7.2 0.0 2.4 3 0 0 3 3 3 0 FAM72 protein Fer4_4 PF12800.2 gi|20092460|ref|NP_618535.1| - 0.025 14.9 11.5 0.28 11.6 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092460|ref|NP_618535.1| - 0.045 13.6 14.9 0.23 11.4 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092460|ref|NP_618535.1| - 0.066 13.0 7.5 0.44 10.4 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20092460|ref|NP_618535.1| - 1.4 9.6 15.2 2.2 9.0 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Methyltransf_18 PF12847.2 gi|20092462|ref|NP_618537.1| - 1.6e-17 64.0 0.0 3.2e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092462|ref|NP_618537.1| - 2.6e-15 56.6 0.0 3.9e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092462|ref|NP_618537.1| - 3.8e-14 52.5 0.0 6.9e-14 51.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092462|ref|NP_618537.1| - 3.9e-13 49.4 0.0 6.1e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092462|ref|NP_618537.1| - 3.6e-12 46.5 0.0 5.3e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092462|ref|NP_618537.1| - 1.5e-10 41.3 0.0 2.5e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092462|ref|NP_618537.1| - 1.1e-09 37.8 0.0 1.5e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|20092462|ref|NP_618537.1| - 2.7e-09 36.6 0.0 4e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20092462|ref|NP_618537.1| - 1.7e-08 34.5 0.0 2.7e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20092462|ref|NP_618537.1| - 7.6e-06 25.2 0.0 1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|20092462|ref|NP_618537.1| - 0.0002 20.8 0.0 0.00029 20.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|20092462|ref|NP_618537.1| - 0.0034 16.4 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|20092462|ref|NP_618537.1| - 0.15 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW NosD PF05048.8 gi|20092464|ref|NP_618539.1| - 6.5e-41 140.0 12.2 6.5e-41 140.0 8.5 2.0 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20092464|ref|NP_618539.1| - 1.4e-06 28.1 22.0 1.4e-06 28.1 15.3 2.8 1 1 1 2 2 2 1 Right handed beta helix region Pectinesterase PF01095.14 gi|20092464|ref|NP_618539.1| - 0.0002 20.0 0.1 0.00032 19.3 0.0 1.3 1 0 0 1 1 1 1 Pectinesterase Cupredoxin_1 PF13473.1 gi|20092464|ref|NP_618539.1| - 0.039 13.8 0.2 0.45 10.4 0.2 2.3 2 0 0 2 2 2 0 Cupredoxin-like domain Excalibur PF05901.6 gi|20092464|ref|NP_618539.1| - 0.048 14.0 0.1 0.13 12.6 0.0 1.8 1 0 0 1 1 1 0 Excalibur calcium-binding domain DEAD PF00270.24 gi|20092465|ref|NP_618540.1| - 3.2e-14 52.7 0.0 1.1e-12 47.8 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|20092465|ref|NP_618540.1| - 1.2e-06 28.4 3.0 1.6e-06 28.1 0.2 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|20092465|ref|NP_618540.1| - 0.00063 19.5 0.0 0.0015 18.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_22 PF13401.1 gi|20092465|ref|NP_618540.1| - 0.0015 18.6 0.1 0.017 15.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF919 PF06034.6 gi|20092465|ref|NP_618540.1| - 0.0085 15.6 0.8 0.023 14.3 0.5 1.8 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) HD PF01966.17 gi|20092465|ref|NP_618540.1| - 0.023 14.7 0.0 0.089 12.8 0.0 2.0 1 0 0 1 1 1 0 HD domain Flavi_DEAD PF07652.9 gi|20092465|ref|NP_618540.1| - 0.12 12.1 0.0 0.66 9.7 0.0 2.0 2 0 0 2 2 2 0 Flavivirus DEAD domain Cas_Cas5d PF09704.5 gi|20092466|ref|NP_618541.1| - 9.9e-05 22.0 0.9 0.0011 18.5 0.6 2.0 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|20092467|ref|NP_618542.1| - 2e-16 59.6 0.0 2.5e-15 56.0 0.0 2.1 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_CXXC_CXXC PF09706.5 gi|20092468|ref|NP_618543.1| - 1.4e-22 79.5 0.1 3.7e-22 78.2 0.0 1.8 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_CXXC_CXXC) CRISPR_Cas2 PF09827.4 gi|20092469|ref|NP_618544.1| - 5.5e-23 80.8 0.8 6.1e-23 80.7 0.6 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 IZUMO PF15005.1 gi|20092469|ref|NP_618544.1| - 0.028 14.4 0.1 0.032 14.2 0.0 1.1 1 0 0 1 1 1 0 Izumo sperm-egg fusion SHOCT PF09851.4 gi|20092469|ref|NP_618544.1| - 0.061 12.8 1.4 0.089 12.2 1.0 1.3 1 0 0 1 1 1 0 Short C-terminal domain Cas_Cas1 PF01867.11 gi|20092470|ref|NP_618545.1| - 1e-79 267.5 0.1 1.2e-79 267.3 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 zf-CGNR PF11706.3 gi|20092470|ref|NP_618545.1| - 0.18 11.3 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 CGNR zinc finger Cas_Cas4 PF01930.12 gi|20092471|ref|NP_618546.1| - 5.6e-53 179.1 1.8 6.5e-53 178.9 1.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|20092471|ref|NP_618546.1| - 2.8e-08 33.4 0.6 3.9e-08 33.0 0.3 1.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas6 PF01881.11 gi|20092472|ref|NP_618547.1| - 1.7e-46 158.2 2.8 4.8e-46 156.7 0.6 1.9 1 1 1 2 2 2 2 CRISPR associated protein Cas6 DNA_alkylation PF08713.6 gi|20092473|ref|NP_618548.1| - 3.8e-63 212.8 0.9 4.3e-63 212.6 0.6 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme YvbH_ext PF11724.3 gi|20092473|ref|NP_618548.1| - 0.0072 15.9 0.3 0.028 14.0 0.2 2.0 1 0 0 1 1 1 1 YvbH-like oligomerisation region Acetyltransf_3 PF13302.1 gi|20092474|ref|NP_618549.1| - 6.3e-23 81.5 0.0 7.4e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20092474|ref|NP_618549.1| - 1.1e-11 44.6 0.0 1.6e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|20092474|ref|NP_618549.1| - 1.3e-11 44.7 0.1 1.5e-11 44.5 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20092474|ref|NP_618549.1| - 4.7e-05 23.3 0.0 5.6e-05 23.0 0.0 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20092474|ref|NP_618549.1| - 0.0017 18.4 0.1 0.0028 17.7 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain EFP PF01132.15 gi|20092474|ref|NP_618549.1| - 0.038 13.6 0.2 0.082 12.5 0.1 1.6 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain ABC_tran PF00005.22 gi|20092476|ref|NP_618551.1| - 5.5e-24 85.0 0.0 9.8e-24 84.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092476|ref|NP_618551.1| - 1e-09 38.8 2.5 0.00053 20.0 0.5 2.3 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|20092476|ref|NP_618551.1| - 0.0001 21.8 0.0 0.014 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|20092476|ref|NP_618551.1| - 0.00017 21.7 0.0 0.00045 20.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20092476|ref|NP_618551.1| - 0.00032 20.1 0.8 0.00066 19.1 0.1 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20092476|ref|NP_618551.1| - 0.00036 19.8 0.5 0.0013 17.9 0.2 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20092476|ref|NP_618551.1| - 0.0005 20.1 0.2 0.002 18.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|20092476|ref|NP_618551.1| - 0.00055 18.9 0.1 0.00084 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.13 gi|20092476|ref|NP_618551.1| - 0.0011 18.5 0.2 0.0024 17.3 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|20092476|ref|NP_618551.1| - 0.0012 17.9 0.0 0.04 12.9 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20092476|ref|NP_618551.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|20092476|ref|NP_618551.1| - 0.0025 18.1 0.1 0.0049 17.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20092476|ref|NP_618551.1| - 0.0026 16.9 0.1 0.0042 16.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20092476|ref|NP_618551.1| - 0.004 17.9 0.4 0.0077 17.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|20092476|ref|NP_618551.1| - 0.0041 17.5 0.0 0.0081 16.6 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_14 PF13173.1 gi|20092476|ref|NP_618551.1| - 0.0077 16.1 0.0 0.15 11.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|20092476|ref|NP_618551.1| - 0.0086 15.9 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 MobB PF03205.9 gi|20092476|ref|NP_618551.1| - 0.014 15.0 0.0 0.034 13.8 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|20092476|ref|NP_618551.1| - 0.015 15.1 0.0 0.1 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|20092476|ref|NP_618551.1| - 0.036 14.0 0.0 0.091 12.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|20092476|ref|NP_618551.1| - 0.036 13.6 0.1 0.08 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|20092476|ref|NP_618551.1| - 0.047 12.8 0.1 0.11 11.6 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.10 gi|20092476|ref|NP_618551.1| - 0.071 12.8 0.1 6.8 6.3 0.0 2.3 2 0 0 2 2 2 0 NTPase ATP-synt_ab PF00006.20 gi|20092476|ref|NP_618551.1| - 0.078 12.4 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|20092476|ref|NP_618551.1| - 0.089 12.9 0.1 0.3 11.2 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|20092476|ref|NP_618551.1| - 0.1 12.2 0.1 0.22 11.1 0.0 1.6 2 0 0 2 2 1 0 Archaeal ATPase RNA12 PF10443.4 gi|20092476|ref|NP_618551.1| - 0.11 10.9 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein Rad17 PF03215.10 gi|20092476|ref|NP_618551.1| - 0.12 11.0 0.0 0.31 9.6 0.0 1.6 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein DUF1638 PF07796.6 gi|20092477|ref|NP_618552.1| - 9.3e-46 155.4 0.0 1.2e-45 155.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Paramyxo_PCT PF14320.1 gi|20092477|ref|NP_618552.1| - 0.14 11.0 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Phosphoprotein P region PCT disordered DUF1638 PF07796.6 gi|20092478|ref|NP_618553.1| - 1.6e-42 144.9 0.0 2e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Glycogen_syn PF05693.8 gi|20092479|ref|NP_618554.1| - 5.2e-16 58.0 0.0 4.1e-07 28.6 0.0 3.1 3 0 0 3 3 3 3 Glycogen synthase Glycos_transf_1 PF00534.15 gi|20092479|ref|NP_618554.1| - 0.0024 17.2 0.1 0.014 14.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|20092479|ref|NP_618554.1| - 0.014 14.8 0.0 0.061 12.7 0.0 1.9 2 0 0 2 2 2 0 Starch synthase catalytic domain GalP_UDP_transf PF01087.17 gi|20092480|ref|NP_618555.1| - 4.5e-14 52.9 0.0 4e-12 46.5 0.0 2.2 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain HIT PF01230.18 gi|20092480|ref|NP_618555.1| - 0.00023 21.6 0.0 1 9.9 0.0 2.2 2 0 0 2 2 2 2 HIT domain GalP_UDP_tr_C PF02744.12 gi|20092480|ref|NP_618555.1| - 0.0023 17.5 0.0 0.0034 16.9 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|20092480|ref|NP_618555.1| - 0.012 15.8 0.0 0.033 14.3 0.0 1.7 2 0 0 2 2 2 0 Scavenger mRNA decapping enzyme C-term binding Cas_CXXC_CXXC PF09706.5 gi|20092480|ref|NP_618555.1| - 0.097 12.8 2.1 0.16 12.1 0.1 2.3 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Glycos_transf_1 PF00534.15 gi|20092482|ref|NP_618557.1| - 8.7e-32 109.8 0.0 1.5e-31 109.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20092482|ref|NP_618557.1| - 2e-19 70.2 0.0 3.4e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|20092482|ref|NP_618557.1| - 5e-14 52.3 0.2 3.2e-12 46.4 0.1 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|20092482|ref|NP_618557.1| - 5.6e-14 52.4 0.0 2.5e-13 50.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20092482|ref|NP_618557.1| - 2.2e-11 43.7 0.0 1e-10 41.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|20092482|ref|NP_618557.1| - 3.5e-10 39.8 0.0 6.9e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|20092482|ref|NP_618557.1| - 0.0015 18.7 0.0 0.0043 17.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Aldo_ket_red PF00248.16 gi|20092483|ref|NP_618558.1| - 4e-39 134.1 0.0 5e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_18 PF13746.1 gi|20092483|ref|NP_618558.1| - 7.1e-08 32.7 6.1 0.0035 17.7 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092483|ref|NP_618558.1| - 9e-08 32.2 10.5 9e-08 32.2 7.3 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092483|ref|NP_618558.1| - 5.5e-06 26.0 11.0 0.0082 15.9 2.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20092483|ref|NP_618558.1| - 5.9e-06 26.5 22.3 9.3e-06 25.9 9.1 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|20092483|ref|NP_618558.1| - 2e-05 24.1 6.9 0.018 14.6 1.0 2.6 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.1 gi|20092483|ref|NP_618558.1| - 0.00037 20.4 13.9 0.0032 17.4 9.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092483|ref|NP_618558.1| - 0.0052 17.1 12.4 0.0052 17.1 8.6 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092483|ref|NP_618558.1| - 0.0062 16.7 26.6 0.012 15.9 3.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20092483|ref|NP_618558.1| - 0.0062 16.0 18.4 0.29 10.7 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092483|ref|NP_618558.1| - 0.023 14.5 12.3 0.41 10.5 0.8 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20092483|ref|NP_618558.1| - 3.2 8.5 21.3 1.1 9.9 3.2 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092483|ref|NP_618558.1| - 4.6 7.3 24.7 0.13 12.2 2.2 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain DUF2150 PF09920.4 gi|20092484|ref|NP_618559.1| - 3e-75 252.0 4.1 3.5e-75 251.7 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF447 PF04289.7 gi|20092484|ref|NP_618559.1| - 0.091 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) UPF0179 PF03684.8 gi|20092485|ref|NP_618560.1| - 6.3e-55 184.6 1.9 7e-55 184.5 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Fe-ADH_2 PF13685.1 gi|20092486|ref|NP_618561.1| - 2.2e-75 253.2 1.3 2.7e-75 252.9 0.9 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|20092486|ref|NP_618561.1| - 2.2e-28 98.9 4.7 5.4e-28 97.6 3.2 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|20092486|ref|NP_618561.1| - 3e-09 36.2 0.2 1.3e-08 34.1 0.2 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase AIRC PF00731.15 gi|20092486|ref|NP_618561.1| - 0.0021 17.3 0.8 0.0054 16.0 0.6 1.7 1 0 0 1 1 1 1 AIR carboxylase DUF63 PF01889.12 gi|20092487|ref|NP_618562.1| - 5.2e-110 367.8 13.6 5.9e-110 367.6 9.4 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF999 PF06198.6 gi|20092487|ref|NP_618562.1| - 0.0053 16.5 1.6 0.028 14.2 0.4 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF999) DUF2627 PF11118.3 gi|20092487|ref|NP_618562.1| - 0.053 13.6 1.1 0.15 12.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) DUF95 PF01944.12 gi|20092488|ref|NP_618563.1| - 1e-35 122.9 18.0 1.3e-35 122.6 12.5 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 SUR7 PF06687.7 gi|20092488|ref|NP_618563.1| - 0.0058 16.2 1.0 0.0058 16.2 0.7 1.4 2 0 0 2 2 2 1 SUR7/PalI family DUF1297 PF06973.7 gi|20092489|ref|NP_618564.1| - 2.6e-79 264.9 0.0 3.4e-79 264.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|20092489|ref|NP_618564.1| - 5.7e-45 152.0 0.0 9.2e-45 151.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|20092489|ref|NP_618564.1| - 0.0044 16.7 0.0 0.52 10.0 0.0 2.4 1 1 0 1 1 1 1 ATP-grasp domain GTP_EFTU PF00009.22 gi|20092490|ref|NP_618565.1| - 1.4e-44 151.8 0.1 2.3e-44 151.0 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|20092490|ref|NP_618565.1| - 1.4e-28 98.7 0.8 3.1e-28 97.6 0.5 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|20092490|ref|NP_618565.1| - 4.4e-07 29.9 0.4 1.1e-06 28.5 0.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|20092490|ref|NP_618565.1| - 0.00098 19.0 0.0 0.004 17.0 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|20092490|ref|NP_618565.1| - 0.0015 18.0 4.1 0.75 9.2 0.0 3.0 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation PolC_DP2 PF03833.8 gi|20092490|ref|NP_618565.1| - 0.0016 16.2 0.2 0.0022 15.7 0.2 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Nop10p PF04135.7 gi|20092490|ref|NP_618565.1| - 0.011 15.5 1.7 0.02 14.6 1.2 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.13 gi|20092490|ref|NP_618565.1| - 0.035 13.3 2.0 5.9 6.1 0.4 2.9 2 1 0 2 2 2 0 Ferrous iron transport protein B zf-ribbon_3 PF13248.1 gi|20092490|ref|NP_618565.1| - 0.038 13.2 1.1 0.038 13.2 0.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|20092490|ref|NP_618565.1| - 0.3 10.4 7.1 0.97 8.8 4.9 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|20092490|ref|NP_618565.1| - 0.45 10.4 2.7 0.81 9.6 1.9 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Fcf1 PF04900.7 gi|20092491|ref|NP_618566.1| - 9.3e-07 28.8 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Fcf1 UPF0278 PF08745.6 gi|20092491|ref|NP_618566.1| - 4e-05 22.9 0.1 0.016 14.4 0.0 2.1 2 0 0 2 2 2 2 UPF0278 family PIN_4 PF13638.1 gi|20092491|ref|NP_618566.1| - 0.0015 18.6 0.1 0.045 13.8 0.0 2.0 1 1 1 2 2 2 1 PIN domain PIN PF01850.16 gi|20092491|ref|NP_618566.1| - 0.045 14.0 0.1 0.34 11.2 0.1 2.0 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.12 gi|20092492|ref|NP_618567.1| - 1.5e-20 73.0 0.2 4.7e-20 71.4 0.0 1.8 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|20092492|ref|NP_618567.1| - 1.4e-10 41.0 0.5 2.5e-10 40.2 0.4 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|20092492|ref|NP_618567.1| - 0.12 12.5 0.0 0.51 10.5 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|20092493|ref|NP_618568.1| - 3.2e-13 49.3 0.0 3.9e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.1 gi|20092493|ref|NP_618568.1| - 0.0056 15.8 0.4 0.29 10.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|20092493|ref|NP_618568.1| - 0.01 15.6 0.5 0.014 15.2 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|20092493|ref|NP_618568.1| - 0.024 13.9 0.3 0.061 12.6 0.0 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_5 PF14634.1 gi|20092493|ref|NP_618568.1| - 0.041 13.6 2.1 0.054 13.2 1.4 1.2 1 0 0 1 1 1 0 zinc-RING finger domain Rad50_zn_hook PF04423.9 gi|20092493|ref|NP_618568.1| - 0.071 12.5 1.7 0.55 9.7 1.2 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C3HC4_3 PF13920.1 gi|20092493|ref|NP_618568.1| - 0.079 12.6 1.9 0.12 12.1 1.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|20092493|ref|NP_618568.1| - 0.18 11.5 3.0 3.7 7.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.7 gi|20092493|ref|NP_618568.1| - 0.48 10.5 5.4 0.63 10.1 0.4 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.3 gi|20092493|ref|NP_618568.1| - 0.85 9.6 0.2 0.85 9.6 0.2 2.1 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|20092493|ref|NP_618568.1| - 3 7.4 5.9 1.1 8.7 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF359 PF04019.7 gi|20092494|ref|NP_618569.1| - 8.2e-43 144.6 0.1 1.1e-42 144.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) eRF1_3 PF03465.10 gi|20092494|ref|NP_618569.1| - 0.035 14.3 0.0 0.051 13.8 0.0 1.5 1 1 0 1 1 1 0 eRF1 domain 3 Ribosomal_S24e PF01282.14 gi|20092495|ref|NP_618570.1| - 8.2e-29 99.2 0.2 9.5e-29 99.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e NADPH_Ox PF08414.5 gi|20092495|ref|NP_618570.1| - 0.092 12.8 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase Ribosomal_S27 PF01599.14 gi|20092496|ref|NP_618571.1| - 3.1e-21 74.9 2.1 3.6e-21 74.7 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.1 gi|20092496|ref|NP_618571.1| - 0.00043 19.8 3.7 0.012 15.2 3.1 2.3 2 1 0 2 2 2 1 Nudix N-terminal Ribosomal_L37e PF01907.14 gi|20092496|ref|NP_618571.1| - 0.0014 18.4 1.2 0.0017 18.1 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|20092496|ref|NP_618571.1| - 0.0017 18.0 0.6 0.0024 17.6 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|20092496|ref|NP_618571.1| - 0.0041 17.0 1.3 0.025 14.5 0.0 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme IBR PF01485.16 gi|20092496|ref|NP_618571.1| - 0.0096 15.7 0.7 0.011 15.6 0.5 1.1 1 0 0 1 1 1 1 IBR domain zf-NADH-PPase PF09297.6 gi|20092496|ref|NP_618571.1| - 0.011 15.2 4.5 0.073 12.5 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|20092496|ref|NP_618571.1| - 0.04 13.6 6.3 0.84 9.3 4.3 2.2 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|20092496|ref|NP_618571.1| - 0.041 13.2 1.2 0.041 13.2 0.8 1.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|20092496|ref|NP_618571.1| - 0.043 13.0 4.3 0.6 9.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|20092496|ref|NP_618571.1| - 0.043 14.1 1.0 0.069 13.4 0.7 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|20092496|ref|NP_618571.1| - 0.061 13.0 0.2 0.061 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|20092496|ref|NP_618571.1| - 0.076 12.7 1.2 0.12 12.2 0.9 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1451 PF07295.6 gi|20092496|ref|NP_618571.1| - 0.11 12.3 0.3 0.11 12.2 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2082 PF09855.4 gi|20092496|ref|NP_618571.1| - 0.13 12.1 4.0 0.16 11.8 0.2 2.4 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_2 PF13240.1 gi|20092496|ref|NP_618571.1| - 0.14 11.6 5.2 2.1 7.9 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20092496|ref|NP_618571.1| - 0.15 11.7 1.0 0.18 11.5 0.7 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-HYPF PF07503.7 gi|20092496|ref|NP_618571.1| - 0.28 10.6 3.4 0.76 9.2 0.2 2.2 2 0 0 2 2 2 0 HypF finger NOB1_Zn_bind PF08772.6 gi|20092496|ref|NP_618571.1| - 0.37 10.6 6.1 0.24 11.2 0.5 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2072 PF09845.4 gi|20092496|ref|NP_618571.1| - 0.87 9.5 2.9 1 9.2 0.1 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Zn_Tnp_IS1595 PF12760.2 gi|20092496|ref|NP_618571.1| - 1.1 9.0 5.2 2 8.2 3.0 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|20092496|ref|NP_618571.1| - 1.2 8.6 6.1 4.4 6.8 2.1 2.7 2 1 1 3 3 3 0 A2L zinc ribbon domain DUF1936 PF09151.5 gi|20092496|ref|NP_618571.1| - 2.4 7.7 8.8 0.29 10.6 0.4 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1936) UPF0547 PF10571.4 gi|20092496|ref|NP_618571.1| - 3.9 7.2 6.0 4.8 6.9 1.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PKD PF00801.15 gi|20092498|ref|NP_618573.1| - 5.1e-120 391.3 112.9 1.5e-17 63.0 2.6 10.9 10 0 0 10 10 10 9 PKD domain PQQ_3 PF13570.1 gi|20092498|ref|NP_618573.1| - 1.1e-100 327.4 82.1 1.1e-10 41.4 0.3 18.3 18 0 0 18 18 18 16 PQQ-like domain DUF3344 PF11824.3 gi|20092498|ref|NP_618573.1| - 5.8e-58 196.4 15.1 5.8e-58 196.4 10.5 4.8 6 1 0 6 6 6 1 Protein of unknown function (DUF3344) PQQ PF01011.16 gi|20092498|ref|NP_618573.1| - 1e-25 87.9 63.4 0.0001 21.6 0.3 16.9 17 0 0 17 17 17 9 PQQ enzyme repeat EF-hand_1 PF00036.27 gi|20092498|ref|NP_618573.1| - 0.45 9.9 13.4 0.014 14.6 1.0 4.3 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.1 gi|20092498|ref|NP_618573.1| - 4.9 7.2 13.8 0.15 12.0 0.2 5.5 6 0 0 6 6 6 0 EF-hand domain PKD PF00801.15 gi|20092499|ref|NP_618574.1| - 3.9e-134 436.5 102.4 1.8e-18 66.0 4.8 9.9 8 0 0 8 8 8 8 PKD domain DUF3344 PF11824.3 gi|20092499|ref|NP_618574.1| - 2e-132 440.6 34.8 1.4e-70 237.7 9.6 5.1 6 0 0 6 6 6 2 Protein of unknown function (DUF3344) PQQ_3 PF13570.1 gi|20092499|ref|NP_618574.1| - 3.7e-52 173.2 80.3 2.5e-10 40.2 0.1 13.0 14 1 1 15 15 11 8 PQQ-like domain PQQ PF01011.16 gi|20092499|ref|NP_618574.1| - 1.5e-23 81.1 32.4 2.4e-05 23.6 0.2 8.9 8 0 0 8 8 8 6 PQQ enzyme repeat CARDB PF07705.6 gi|20092499|ref|NP_618574.1| - 4.5e-21 74.7 6.5 4.5e-21 74.7 4.5 8.3 10 1 1 11 11 11 1 CARDB FG-GAP PF01839.18 gi|20092499|ref|NP_618574.1| - 1.9e-13 49.6 57.7 0.00037 20.1 1.5 9.7 8 0 0 8 8 8 5 FG-GAP repeat VCBS PF13517.1 gi|20092499|ref|NP_618574.1| - 4.2e-08 33.4 29.0 1.6e-05 25.1 2.5 13.6 9 4 5 14 14 13 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella EF-hand_8 PF13833.1 gi|20092499|ref|NP_618574.1| - 0.2 11.3 2.2 0.86 9.2 1.5 2.2 1 0 0 1 1 1 0 EF-hand domain pair BBS1 PF14779.1 gi|20092499|ref|NP_618574.1| - 2.1 7.2 0.3 58 2.5 0.0 3.1 4 0 0 4 4 4 0 Ciliary BBSome complex subunit 1 EF-hand_6 PF13405.1 gi|20092499|ref|NP_618574.1| - 3.7 7.6 7.8 0.19 11.6 0.2 3.0 2 0 0 2 2 1 0 EF-hand domain EF-hand_1 PF00036.27 gi|20092499|ref|NP_618574.1| - 5.8 6.4 13.8 0.018 14.3 1.0 3.6 3 0 0 3 3 3 0 EF hand DUF3344 PF11824.3 gi|20092500|ref|NP_618575.1| - 1.5e-131 437.6 35.3 7.2e-72 242.0 8.8 5.2 4 2 1 6 6 6 2 Protein of unknown function (DUF3344) PKD PF00801.15 gi|20092500|ref|NP_618575.1| - 3.9e-95 311.6 98.1 2.3e-17 62.4 5.3 10.0 9 2 1 10 10 10 6 PKD domain CARDB PF07705.6 gi|20092500|ref|NP_618575.1| - 1.5e-60 201.5 74.3 2.3e-22 78.9 2.6 10.7 9 3 1 11 11 11 3 CARDB VCBS PF13517.1 gi|20092500|ref|NP_618575.1| - 9.1e-24 83.5 47.3 1.4e-10 41.4 3.4 8.1 3 2 4 7 7 7 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|20092500|ref|NP_618575.1| - 3e-21 74.4 47.7 2.8e-05 23.6 1.3 7.7 7 0 0 7 7 7 5 FG-GAP repeat Y_Y_Y PF07495.8 gi|20092500|ref|NP_618575.1| - 0.0027 17.4 14.2 0.72 9.6 0.0 5.9 6 0 0 6 6 6 2 Y_Y_Y domain EF-hand_6 PF13405.1 gi|20092500|ref|NP_618575.1| - 0.0082 15.9 1.7 0.14 12.1 0.2 3.7 3 0 0 3 3 3 1 EF-hand domain EF-hand_8 PF13833.1 gi|20092500|ref|NP_618575.1| - 0.15 11.6 3.5 0.63 9.6 1.5 2.8 3 0 0 3 3 3 0 EF-hand domain pair Thioredoxin PF00085.15 gi|20092502|ref|NP_618577.1| - 1e-12 47.6 0.0 1.5e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|20092502|ref|NP_618577.1| - 7.8e-07 28.7 0.0 1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_6 PF13848.1 gi|20092502|ref|NP_618577.1| - 2.2e-06 27.5 0.0 3.5e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|20092502|ref|NP_618577.1| - 8.2e-06 25.7 0.0 1.8e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_8 PF13905.1 gi|20092502|ref|NP_618577.1| - 0.00012 22.1 0.0 0.00053 20.0 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|20092502|ref|NP_618577.1| - 0.0012 19.0 0.0 0.0022 18.1 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain DIM1 PF02966.11 gi|20092502|ref|NP_618577.1| - 0.0023 17.4 0.0 0.0032 16.9 0.0 1.3 1 0 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_7 PF13899.1 gi|20092502|ref|NP_618577.1| - 0.0063 16.5 0.0 0.013 15.5 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|20092502|ref|NP_618577.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain DUF953 PF06110.6 gi|20092502|ref|NP_618577.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DUF836 PF05768.9 gi|20092502|ref|NP_618577.1| - 0.032 14.4 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.1 gi|20092502|ref|NP_618577.1| - 0.037 13.5 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DUF2847 PF11009.3 gi|20092502|ref|NP_618577.1| - 0.041 13.4 0.0 0.076 12.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2847) DUF3344 PF11824.3 gi|20092503|ref|NP_618578.1| - 5.1e-67 226.1 24.5 6e-67 225.8 17.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) TPR_1 PF00515.23 gi|20092504|ref|NP_618579.1| - 8.3e-97 313.2 65.3 1e-07 31.2 0.1 21.3 21 0 0 21 21 21 17 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092504|ref|NP_618579.1| - 1.3e-94 302.7 83.1 1.3e-07 30.9 0.1 21.6 22 0 0 22 22 21 20 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092504|ref|NP_618579.1| - 3.3e-93 305.3 69.8 8.5e-14 50.9 0.4 13.9 8 3 9 17 17 17 15 TPR repeat TPR_16 PF13432.1 gi|20092504|ref|NP_618579.1| - 5.2e-73 240.4 59.4 1.8e-10 41.1 1.3 14.7 7 3 7 15 15 15 11 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092504|ref|NP_618579.1| - 2.2e-55 180.0 58.6 6.8e-06 26.2 0.1 21.0 8 4 13 21 21 21 13 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092504|ref|NP_618579.1| - 1.2e-54 178.0 66.5 4.6e-05 22.8 0.1 20.4 20 2 2 22 22 19 17 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092504|ref|NP_618579.1| - 3.6e-54 176.5 42.1 3.9e-06 26.6 0.1 20.4 21 0 0 21 21 21 10 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092504|ref|NP_618579.1| - 3.7e-53 177.7 54.4 3e-10 40.2 0.1 12.9 10 2 4 14 14 14 11 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092504|ref|NP_618579.1| - 1.4e-48 162.7 56.6 1.9e-08 34.1 0.2 13.7 6 5 10 16 16 16 12 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20092504|ref|NP_618579.1| - 5.8e-47 157.4 29.8 5.6e-06 26.1 0.0 13.6 8 3 6 15 15 15 11 Tetratricopeptide repeat Apc3 PF12895.2 gi|20092504|ref|NP_618579.1| - 3.5e-43 145.6 30.9 6.7e-08 32.5 0.7 10.3 5 3 5 11 11 11 9 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|20092504|ref|NP_618579.1| - 6.9e-43 141.0 45.0 0.00023 20.6 0.1 20.6 20 1 1 21 21 21 8 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092504|ref|NP_618579.1| - 3.3e-22 77.3 67.4 0.022 15.1 0.1 20.5 22 1 1 23 23 20 4 Tetratricopeptide repeat NARP1 PF12569.3 gi|20092504|ref|NP_618579.1| - 5.9e-14 51.7 17.6 0.0032 16.2 1.1 8.6 5 2 4 10 10 10 4 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|20092504|ref|NP_618579.1| - 9.6e-14 51.0 40.7 0.15 11.9 0.0 15.5 15 2 3 18 18 17 4 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.9 gi|20092504|ref|NP_618579.1| - 1.1e-12 47.0 21.5 1.1 9.9 0.0 13.3 15 0 0 15 15 11 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|20092504|ref|NP_618579.1| - 1.2e-12 47.5 17.2 0.0098 14.9 0.0 8.5 2 2 5 8 8 8 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20092504|ref|NP_618579.1| - 2.9e-10 39.7 51.2 0.24 11.3 0.1 15.3 18 0 0 18 18 17 3 Tetratricopeptide repeat BTAD PF03704.12 gi|20092504|ref|NP_618579.1| - 2.1e-09 37.8 26.1 0.00067 19.9 0.3 9.7 4 4 6 10 10 10 2 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|20092504|ref|NP_618579.1| - 1.3e-08 34.8 18.7 0.14 12.2 0.0 9.5 6 2 5 11 11 10 3 Tetratricopeptide repeat RPN7 PF10602.4 gi|20092504|ref|NP_618579.1| - 3e-08 33.2 14.7 0.36 10.1 0.0 10.2 5 3 4 10 10 10 2 26S proteasome subunit RPN7 DUF3856 PF12968.2 gi|20092504|ref|NP_618579.1| - 3.4e-06 26.9 27.6 0.57 9.9 1.1 11.6 5 3 7 13 13 13 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.7 gi|20092504|ref|NP_618579.1| - 0.00033 20.3 36.7 1.5 8.6 0.1 10.8 12 0 0 12 12 10 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|20092504|ref|NP_618579.1| - 0.00033 20.6 25.9 0.62 10.0 0.6 9.1 7 5 1 9 9 9 2 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|20092504|ref|NP_618579.1| - 0.00034 20.8 6.8 3.5 7.8 0.0 6.4 5 2 2 7 7 7 1 Alkyl sulfatase dimerisation PPTA PF01239.17 gi|20092504|ref|NP_618579.1| - 0.00078 18.6 0.1 0.28 10.6 0.0 4.3 4 0 0 4 4 3 1 Protein prenyltransferase alpha subunit repeat FAT PF02259.18 gi|20092504|ref|NP_618579.1| - 0.0015 17.5 5.7 0.42 9.5 0.0 4.5 3 1 0 4 4 4 1 FAT domain ChAPs PF09295.5 gi|20092504|ref|NP_618579.1| - 0.028 13.2 0.0 10 4.7 0.0 3.0 3 0 0 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) PPR PF01535.15 gi|20092504|ref|NP_618579.1| - 0.83 9.7 34.7 3.6 7.7 0.0 11.8 13 0 0 13 13 12 0 PPR repeat MIT PF04212.13 gi|20092504|ref|NP_618579.1| - 6.9 6.6 40.2 3.5 7.5 0.1 11.3 13 1 1 14 14 13 0 MIT (microtubule interacting and transport) domain PPR_3 PF13812.1 gi|20092504|ref|NP_618579.1| - 9 6.8 9.6 16 6.0 0.0 6.1 7 0 0 7 7 3 0 Pentatricopeptide repeat domain Peptidase_M22 PF00814.20 gi|20092505|ref|NP_618580.1| - 3e-87 292.5 0.0 3.8e-87 292.1 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|20092505|ref|NP_618580.1| - 1.6e-08 34.6 0.1 0.00055 19.7 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|20092505|ref|NP_618580.1| - 9.9e-08 31.5 0.0 1.8e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|20092505|ref|NP_618580.1| - 1e-06 27.9 0.0 0.00012 21.2 0.0 2.2 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|20092505|ref|NP_618580.1| - 8.7e-06 25.0 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain B12-binding PF02310.14 gi|20092505|ref|NP_618580.1| - 0.0029 17.4 0.2 2.1 8.2 0.0 3.4 3 0 0 3 3 3 1 B12 binding domain CmcH_NodU PF02543.10 gi|20092505|ref|NP_618580.1| - 0.0083 15.2 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase Pkinase_Tyr PF07714.12 gi|20092505|ref|NP_618580.1| - 0.027 13.5 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase WaaY PF06176.6 gi|20092505|ref|NP_618580.1| - 0.029 13.6 0.0 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) DUF4350 PF14258.1 gi|20092505|ref|NP_618580.1| - 0.12 12.5 0.0 0.34 11.1 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Ham1p_like PF01725.11 gi|20092506|ref|NP_618581.1| - 3.9e-55 186.1 0.0 4.3e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family TatC PF00902.13 gi|20092507|ref|NP_618582.1| - 0.14 11.4 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) Cyclase PF04199.8 gi|20092508|ref|NP_618583.1| - 1.2e-20 73.8 0.0 1.6e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Fer4 PF00037.22 gi|20092509|ref|NP_618584.1| - 8.8e-10 37.7 15.2 2.1e-05 23.8 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20092509|ref|NP_618584.1| - 1.9e-08 33.9 11.4 2.4e-08 33.6 7.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092509|ref|NP_618584.1| - 2.1e-08 33.6 15.6 0.00017 21.2 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20092509|ref|NP_618584.1| - 4.7e-08 33.1 23.5 8e-06 26.0 9.0 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092509|ref|NP_618584.1| - 5.2e-07 29.9 11.2 7.2e-07 29.5 7.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092509|ref|NP_618584.1| - 1.3e-06 29.0 12.7 6.8e-05 23.5 3.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|20092509|ref|NP_618584.1| - 5.6e-06 26.2 12.0 0.0016 18.5 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092509|ref|NP_618584.1| - 2.9e-05 23.7 12.2 0.0064 16.3 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20092509|ref|NP_618584.1| - 3.6e-05 23.6 20.6 0.0033 17.4 0.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20092509|ref|NP_618584.1| - 6.9e-05 22.6 9.5 0.037 13.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20092509|ref|NP_618584.1| - 0.0022 17.8 4.9 0.0026 17.6 3.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20092509|ref|NP_618584.1| - 0.0045 17.4 15.3 0.024 15.1 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20092509|ref|NP_618584.1| - 0.0065 16.7 13.7 0.0078 16.5 1.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Thioredoxin PF00085.15 gi|20092509|ref|NP_618584.1| - 0.023 14.3 1.9 0.024 14.2 1.3 1.2 1 0 0 1 1 1 0 Thioredoxin Fer4_18 PF13746.1 gi|20092509|ref|NP_618584.1| - 0.79 10.1 15.2 0.093 13.1 2.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Glu_synthase PF01645.12 gi|20092509|ref|NP_618584.1| - 1.1 8.1 3.7 1.1 8.0 2.6 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase Fer4_15 PF13459.1 gi|20092509|ref|NP_618584.1| - 1.3 9.6 12.9 1.6 9.3 1.6 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain C1_1 PF00130.17 gi|20092509|ref|NP_618584.1| - 7.3 6.4 10.4 20 4.9 7.2 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Fer4_13 PF13370.1 gi|20092509|ref|NP_618584.1| - 8 6.9 12.6 1.9 8.9 1.3 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|20092510|ref|NP_618585.1| - 6.8e-09 36.1 3.7 1.3e-08 35.1 0.0 2.9 4 0 0 4 4 4 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|20092510|ref|NP_618585.1| - 0.00041 20.4 0.0 0.0009 19.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20092510|ref|NP_618585.1| - 0.0006 19.8 0.8 0.0013 18.6 0.0 2.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain DUF3260 PF11658.3 gi|20092510|ref|NP_618585.1| - 0.1 10.7 0.2 0.36 8.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3260) Pox_A12 PF04651.8 gi|20092510|ref|NP_618585.1| - 0.17 11.9 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A12 protein Hexapep PF00132.19 gi|20092512|ref|NP_618587.1| - 3.4e-12 45.2 13.2 1.7e-07 30.3 4.4 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|20092512|ref|NP_618587.1| - 6.3e-08 32.0 13.2 1.7e-05 24.2 4.4 3.3 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase 3-alpha PF03475.9 gi|20092512|ref|NP_618587.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 3-alpha domain NAD_synthase PF02540.12 gi|20092513|ref|NP_618588.1| - 1.3e-54 184.6 0.3 8.5e-33 113.2 0.1 2.1 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|20092513|ref|NP_618588.1| - 0.00084 18.0 0.0 0.0043 15.6 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase RTX_C PF08339.5 gi|20092513|ref|NP_618588.1| - 0.0028 17.3 0.5 0.0046 16.6 0.4 1.3 1 0 0 1 1 1 1 RTX C-terminal domain DUF3826 PF12875.2 gi|20092513|ref|NP_618588.1| - 0.007 16.0 0.2 0.47 10.1 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF3826) QueC PF06508.8 gi|20092513|ref|NP_618588.1| - 0.02 14.1 0.0 0.62 9.3 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|20092514|ref|NP_618589.1| - 0.0019 17.1 0.0 0.0029 16.5 0.0 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|20092514|ref|NP_618589.1| - 0.0049 16.1 0.0 0.0094 15.2 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|20092514|ref|NP_618589.1| - 0.0064 15.0 0.1 0.013 14.0 0.0 1.6 1 1 1 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|20092514|ref|NP_618589.1| - 0.052 13.0 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_4 PF01902.12 gi|20092514|ref|NP_618589.1| - 0.054 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 ATP-binding region Cytomega_UL84 PF06284.6 gi|20092514|ref|NP_618589.1| - 0.14 10.5 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein AMP-binding PF00501.23 gi|20092515|ref|NP_618590.1| - 2e-70 237.2 0.0 2.4e-70 237.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|20092515|ref|NP_618590.1| - 4.5e-06 27.5 0.0 8.9e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.20 gi|20092516|ref|NP_618591.1| - 0.00025 21.2 0.2 0.00029 21.0 0.1 1.3 1 0 0 1 1 1 1 Phosphopantetheine attachment site ACPS PF01648.15 gi|20092517|ref|NP_618592.1| - 0.021 14.6 0.3 1.4 8.7 0.0 2.8 2 2 0 2 2 2 0 4'-phosphopantetheinyl transferase superfamily OrfB_IS605 PF01385.14 gi|20092518|ref|NP_618593.1| - 1.2e-45 155.6 2.8 1.2e-45 155.6 2.0 1.4 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|20092518|ref|NP_618593.1| - 6.8e-24 83.3 0.3 1.8e-23 81.9 0.1 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|20092518|ref|NP_618593.1| - 8e-21 73.1 0.4 1.9e-20 71.9 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|20092518|ref|NP_618593.1| - 0.058 13.3 0.7 0.13 12.3 0.2 1.7 2 0 0 2 2 2 0 Piccolo Zn-finger HypA PF01155.14 gi|20092518|ref|NP_618593.1| - 0.069 12.8 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|20092518|ref|NP_618593.1| - 0.1 12.4 0.5 0.21 11.4 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-RanBP PF00641.13 gi|20092518|ref|NP_618593.1| - 0.61 9.2 6.5 4.5 6.4 0.1 2.6 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin PF00301.15 gi|20092518|ref|NP_618593.1| - 2.2 8.1 7.3 23 4.9 5.1 2.3 1 1 0 1 1 1 0 Rubredoxin DUF2551 PF10826.3 gi|20092519|ref|NP_618594.1| - 1.7e-33 114.3 0.4 1.8e-33 114.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|20092519|ref|NP_618594.1| - 0.077 12.9 0.0 0.097 12.5 0.0 1.0 1 0 0 1 1 1 0 Ferric uptake regulator family Prenyltransf PF01255.14 gi|20092520|ref|NP_618595.1| - 2.1e-78 262.5 0.0 2.6e-78 262.1 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Glyoxal_oxid_N PF07250.6 gi|20092520|ref|NP_618595.1| - 0.047 12.7 0.0 0.07 12.1 0.0 1.3 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus PIF1 PF05970.9 gi|20092520|ref|NP_618595.1| - 0.048 12.6 0.0 0.083 11.8 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase Spo12 PF05032.7 gi|20092521|ref|NP_618596.1| - 0.049 13.2 3.2 0.32 10.6 0.3 2.5 3 0 0 3 3 3 0 Spo12 family Thioredox_DsbH PF03190.10 gi|20092523|ref|NP_618598.1| - 2.9e-77 257.9 0.1 4.6e-77 257.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|20092523|ref|NP_618598.1| - 2.8e-13 49.6 0.0 5e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like C5-epim_C PF06662.8 gi|20092523|ref|NP_618598.1| - 5e-05 22.6 0.2 0.019 14.2 0.0 3.1 3 0 0 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.9 gi|20092523|ref|NP_618598.1| - 7.2e-05 22.3 0.0 0.31 10.3 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.1 gi|20092523|ref|NP_618598.1| - 0.00027 21.1 0.0 0.0007 19.7 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.6 gi|20092523|ref|NP_618598.1| - 0.00098 18.2 0.0 0.18 10.7 0.0 3.0 3 0 0 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|20092523|ref|NP_618598.1| - 0.0037 16.3 0.2 0.36 9.8 0.0 2.4 2 1 0 2 2 2 1 Glycosyl Hydrolase Family 88 LANC_like PF05147.8 gi|20092523|ref|NP_618598.1| - 0.014 13.9 0.0 0.6 8.6 0.0 2.9 3 0 0 3 3 3 0 Lanthionine synthetase C-like protein Cyt-b5 PF00173.23 gi|20092524|ref|NP_618599.1| - 4.8e-12 45.4 0.3 5.6e-12 45.2 0.2 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain Pyridox_oxidase PF01243.15 gi|20092525|ref|NP_618600.1| - 1.4e-14 53.8 0.0 4.2e-14 52.3 0.0 1.7 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|20092525|ref|NP_618600.1| - 7.7e-07 29.0 0.1 9.9e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|20092525|ref|NP_618600.1| - 0.00033 20.4 0.0 0.00044 20.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PPDK_N PF01326.14 gi|20092526|ref|NP_618601.1| - 2.5e-21 76.0 0.0 2.9e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AAA_18 PF13238.1 gi|20092527|ref|NP_618602.1| - 1.5e-25 90.0 1.7 2.1e-25 89.4 0.9 1.5 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20092527|ref|NP_618602.1| - 2.1e-16 60.8 0.3 2.8e-16 60.4 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|20092527|ref|NP_618602.1| - 7.7e-06 25.9 0.0 1.2e-05 25.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|20092527|ref|NP_618602.1| - 1.3e-05 25.1 0.0 0.0029 17.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain CoaE PF01121.15 gi|20092527|ref|NP_618602.1| - 0.00019 20.8 0.2 0.047 13.0 0.0 2.3 1 1 1 2 2 2 1 Dephospho-CoA kinase SKI PF01202.17 gi|20092527|ref|NP_618602.1| - 0.00039 20.3 0.4 0.0012 18.7 0.2 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_5 PF07728.9 gi|20092527|ref|NP_618602.1| - 0.0013 18.4 0.2 0.0021 17.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|20092527|ref|NP_618602.1| - 0.0019 18.4 0.5 0.0074 16.4 0.4 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|20092527|ref|NP_618602.1| - 0.0034 16.5 0.1 0.0079 15.3 0.0 1.8 1 1 1 2 2 2 1 Zeta toxin AAA_22 PF13401.1 gi|20092527|ref|NP_618602.1| - 0.0037 17.3 0.0 0.0079 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|20092527|ref|NP_618602.1| - 0.0073 15.6 1.0 2 7.7 0.0 2.5 1 1 1 3 3 3 2 Thymidylate kinase MobB PF03205.9 gi|20092527|ref|NP_618602.1| - 0.0093 15.6 0.4 0.22 11.2 0.1 2.1 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B dNK PF01712.14 gi|20092527|ref|NP_618602.1| - 0.0097 15.8 0.1 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Deoxynucleoside kinase KTI12 PF08433.5 gi|20092527|ref|NP_618602.1| - 0.0099 15.1 0.1 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Apolipoprotein PF01442.13 gi|20092527|ref|NP_618602.1| - 0.018 14.5 0.6 0.022 14.2 0.4 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain PRK PF00485.13 gi|20092527|ref|NP_618602.1| - 0.023 14.2 0.2 0.3 10.6 0.0 2.4 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family ADK PF00406.17 gi|20092527|ref|NP_618602.1| - 0.045 13.6 0.1 0.54 10.1 0.0 2.2 1 1 1 2 2 2 0 Adenylate kinase ABC_tran PF00005.22 gi|20092527|ref|NP_618602.1| - 0.089 13.0 0.1 0.1 12.8 0.1 1.4 1 1 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|20092527|ref|NP_618602.1| - 0.12 11.1 0.3 0.28 9.9 0.1 1.7 2 0 0 2 2 2 0 ArgK protein AAA_19 PF13245.1 gi|20092527|ref|NP_618602.1| - 0.18 11.5 1.2 0.44 10.3 0.9 1.6 1 0 0 1 1 1 0 Part of AAA domain CTP_transf_2 PF01467.21 gi|20092528|ref|NP_618603.1| - 2.3e-16 60.2 0.0 3.2e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FrhB_FdhB_C PF04432.8 gi|20092529|ref|NP_618604.1| - 1.5e-43 147.9 0.0 2.8e-43 147.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|20092529|ref|NP_618604.1| - 5.4e-19 67.8 0.0 8.9e-19 67.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|20092529|ref|NP_618604.1| - 4.1e-07 29.3 20.0 2.5e-05 23.6 5.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20092529|ref|NP_618604.1| - 3.1e-06 27.1 4.4 3.1e-06 27.1 3.0 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092529|ref|NP_618604.1| - 4.6e-06 26.3 9.4 4.6e-06 26.3 6.5 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092529|ref|NP_618604.1| - 3.2e-05 24.2 24.5 0.00041 20.6 9.0 2.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092529|ref|NP_618604.1| - 3.6e-05 23.9 8.4 3.6e-05 23.9 5.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20092529|ref|NP_618604.1| - 5.7e-05 22.7 17.4 0.004 16.9 3.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20092529|ref|NP_618604.1| - 0.00062 20.0 7.2 0.018 15.4 6.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092529|ref|NP_618604.1| - 0.0026 17.5 5.9 0.0026 17.5 4.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092529|ref|NP_618604.1| - 0.0074 16.1 15.0 0.0074 16.1 10.4 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092529|ref|NP_618604.1| - 0.012 15.9 1.9 0.012 15.9 1.3 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20092529|ref|NP_618604.1| - 0.02 15.4 6.5 0.49 10.9 1.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|20092529|ref|NP_618604.1| - 0.87 10.3 17.2 0.15 12.8 7.9 2.5 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|20092529|ref|NP_618604.1| - 2.8 8.4 12.9 5.9 7.3 3.9 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20092529|ref|NP_618604.1| - 9.2 7.0 29.7 2.2 9.0 6.5 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Bac_luciferase PF00296.15 gi|20092530|ref|NP_618605.1| - 1.8e-67 227.6 0.0 2e-67 227.5 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Desulfoferrod_N PF06397.7 gi|20092531|ref|NP_618606.1| - 1.1e-19 69.5 6.0 1.2e-19 69.4 4.2 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain RRN7 PF11781.3 gi|20092531|ref|NP_618606.1| - 0.011 15.2 2.3 0.014 14.9 1.6 1.2 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-UDP PF14569.1 gi|20092531|ref|NP_618606.1| - 0.044 13.5 1.1 0.045 13.5 0.8 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger DUF3449 PF11931.3 gi|20092531|ref|NP_618606.1| - 0.046 13.2 0.2 0.054 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) DUF2180 PF09947.4 gi|20092532|ref|NP_618607.1| - 1.3e-34 117.7 7.3 1.5e-34 117.5 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|20092532|ref|NP_618607.1| - 0.0018 18.1 1.8 0.0028 17.4 1.2 1.4 1 0 0 1 1 1 1 FYVE zinc finger Cytochrom_c3_2 PF14537.1 gi|20092532|ref|NP_618607.1| - 0.23 11.8 5.5 0.66 10.3 3.8 1.7 1 1 0 1 1 1 0 Cytochrome c3 DZR PF12773.2 gi|20092532|ref|NP_618607.1| - 0.83 9.5 8.8 6 6.7 6.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|20092532|ref|NP_618607.1| - 1.3 9.0 4.7 2.6 8.1 0.8 2.5 2 1 0 2 2 2 0 zinc-finger zf-AD PF07776.10 gi|20092532|ref|NP_618607.1| - 9.8 6.2 9.5 54 3.8 6.6 2.1 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) DUF2180 PF09947.4 gi|20092533|ref|NP_618608.1| - 1.6e-32 111.0 6.0 1.9e-32 110.7 4.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|20092533|ref|NP_618608.1| - 0.0097 15.7 1.6 0.018 14.9 1.1 1.5 1 1 0 1 1 1 1 FYVE zinc finger zf-C3HC4_2 PF13923.1 gi|20092533|ref|NP_618608.1| - 0.18 11.8 7.6 3.7 7.6 0.1 2.7 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Tnp_zf-ribbon_2 PF13842.1 gi|20092533|ref|NP_618608.1| - 0.3 11.5 4.8 2 8.9 1.1 2.5 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-RING_5 PF14634.1 gi|20092533|ref|NP_618608.1| - 3.3 7.5 7.5 2.1 8.1 0.9 2.3 2 1 0 2 2 2 0 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|20092533|ref|NP_618608.1| - 7.5 6.3 8.0 21 4.8 1.3 2.7 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-AD PF07776.10 gi|20092533|ref|NP_618608.1| - 7.8 6.5 6.9 68 3.5 4.8 2.5 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) CMD PF02627.15 gi|20092534|ref|NP_618609.1| - 1.1e-17 63.6 0.1 1.5e-17 63.1 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|20092534|ref|NP_618609.1| - 0.028 13.1 0.0 0.031 12.9 0.0 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) SapB_1 PF05184.10 gi|20092534|ref|NP_618609.1| - 0.17 11.7 2.9 0.33 10.8 0.9 2.3 2 1 0 2 2 2 0 Saposin-like type B, region 1 Desulfoferrodox PF01880.13 gi|20092535|ref|NP_618610.1| - 1.1e-32 112.1 0.4 1.3e-32 111.9 0.3 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin THP2 PF09432.5 gi|20092535|ref|NP_618610.1| - 0.073 12.9 0.1 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Tho complex subunit THP2 DUF2795 PF11387.3 gi|20092536|ref|NP_618611.1| - 0.13 12.1 0.3 4 7.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Cytochrome_C554 PF13435.1 gi|20092537|ref|NP_618612.1| - 1.6e-09 37.9 3.1 1.4e-06 28.3 0.6 2.3 1 1 1 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|20092537|ref|NP_618612.1| - 4.5e-08 32.6 1.0 0.0024 17.4 0.7 2.6 1 1 1 2 2 2 2 Cytochrome c7 C1_1 PF00130.17 gi|20092537|ref|NP_618612.1| - 0.00028 20.5 0.7 0.27 10.9 0.0 2.6 2 1 0 2 2 2 2 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_NNT PF03264.9 gi|20092537|ref|NP_618612.1| - 0.00079 18.9 0.9 0.44 9.9 0.3 2.3 2 0 0 2 2 2 2 NapC/NirT cytochrome c family, N-terminal region Cytochrom_c3_2 PF14537.1 gi|20092537|ref|NP_618612.1| - 0.002 18.4 8.0 9 6.7 6.6 3.2 1 1 1 2 2 2 2 Cytochrome c3 Cytochrome_CBB3 PF13442.1 gi|20092537|ref|NP_618612.1| - 0.004 17.2 10.8 2.9 8.1 0.0 4.4 2 2 2 4 4 4 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.5 gi|20092537|ref|NP_618612.1| - 0.004 16.6 6.7 14 5.3 0.0 4.1 3 1 1 4 4 4 0 Doubled CXXCH motif (Paired_CXXCH_1) SoxY PF13501.1 gi|20092537|ref|NP_618612.1| - 0.044 13.8 0.1 0.093 12.7 0.1 1.5 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY DZR PF12773.2 gi|20092537|ref|NP_618612.1| - 0.08 12.7 2.2 3.7 7.4 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon DUF11 PF01345.13 gi|20092537|ref|NP_618612.1| - 0.11 12.6 0.0 0.47 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF11 GSu_C4xC__C2xCH PF09698.5 gi|20092537|ref|NP_618612.1| - 8.4 6.6 13.2 12 6.1 2.2 4.0 2 1 1 3 3 3 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) FMN_red PF03358.10 gi|20092538|ref|NP_618613.1| - 3.7e-29 101.1 0.0 4.7e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20092538|ref|NP_618613.1| - 4.9e-06 26.1 0.0 9.5e-06 25.2 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold Flavoprotein PF02441.14 gi|20092539|ref|NP_618614.1| - 5e-20 71.4 0.0 7.2e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Rubrerythrin PF02915.12 gi|20092540|ref|NP_618615.1| - 9.9e-13 48.5 8.7 1.3e-12 48.2 5.6 1.5 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|20092540|ref|NP_618615.1| - 2.4e-05 24.2 1.0 0.12 12.2 0.0 2.2 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.5 gi|20092540|ref|NP_618615.1| - 5.2e-05 23.4 3.0 0.16 12.1 0.0 2.4 3 0 0 3 3 3 2 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|20092540|ref|NP_618615.1| - 0.0057 16.4 6.7 0.053 13.2 1.7 2.2 1 1 1 2 2 2 2 Ferritin-like domain V-ATPase_G PF03179.10 gi|20092540|ref|NP_618615.1| - 0.078 13.2 0.0 0.078 13.2 0.0 2.3 2 1 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit COQ7 PF03232.8 gi|20092540|ref|NP_618615.1| - 0.16 11.4 0.8 0.3 10.5 0.6 1.8 1 1 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 OmdA PF13376.1 gi|20092540|ref|NP_618615.1| - 0.41 10.3 4.9 8.6 6.1 0.1 3.5 2 2 2 4 4 4 0 Bacteriocin-protection, YdeI or OmpD-Associated Lactamase_B PF00753.22 gi|20092541|ref|NP_618616.1| - 1.3e-23 83.6 0.1 2.2e-23 82.9 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|20092541|ref|NP_618616.1| - 5.5e-16 58.8 0.0 1.1e-15 57.9 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|20092541|ref|NP_618616.1| - 0.00026 20.5 0.2 0.0016 17.9 0.1 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|20092541|ref|NP_618616.1| - 0.00037 20.5 0.0 0.00073 19.5 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin domain Lactamase_B_2 PF12706.2 gi|20092541|ref|NP_618616.1| - 0.0025 17.3 0.0 0.0049 16.4 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain AAL_decarboxy PF03306.8 gi|20092542|ref|NP_618617.1| - 3.8e-49 166.6 0.0 4.4e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase DUF4277 PF14104.1 gi|20092543|ref|NP_618618.1| - 3.9e-41 139.8 0.0 9e-41 138.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20092543|ref|NP_618618.1| - 1.6e-10 40.9 0.1 2.5e-09 37.0 0.0 2.2 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20092543|ref|NP_618618.1| - 0.02 14.3 0.5 0.053 12.9 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 AAL_decarboxy PF03306.8 gi|20092544|ref|NP_618619.1| - 1.6e-33 115.6 0.1 1.9e-33 115.3 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Adeno_IVa2 PF02456.10 gi|20092544|ref|NP_618619.1| - 0.17 10.4 0.0 0.23 10.0 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein LPAM_1 PF08139.7 gi|20092544|ref|NP_618619.1| - 0.51 10.6 2.3 0.88 9.8 1.6 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Cyclase PF04199.8 gi|20092545|ref|NP_618620.1| - 7.3e-22 77.8 0.0 9.2e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Iso_dh PF00180.15 gi|20092546|ref|NP_618621.1| - 1.3e-94 317.0 0.0 1.5e-94 316.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF204 PF02659.10 gi|20092547|ref|NP_618622.1| - 6.8e-38 128.6 17.9 6.3e-21 74.2 2.8 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF RseC_MucC PF04246.7 gi|20092547|ref|NP_618622.1| - 1.2 8.6 6.0 4.8 6.7 0.2 2.5 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Aconitase_C PF00694.14 gi|20092549|ref|NP_618624.1| - 7.4e-21 74.6 0.1 1.2e-20 73.9 0.0 1.4 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|20092549|ref|NP_618624.1| - 0.00029 20.3 0.0 0.02 14.3 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus FAD_binding_9 PF08021.6 gi|20092549|ref|NP_618624.1| - 0.096 12.6 0.0 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 Siderophore-interacting FAD-binding domain STT3 PF02516.9 gi|20092550|ref|NP_618625.1| - 2.2e-29 102.7 42.6 1.9e-28 99.7 29.0 2.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit STT3 PF02516.9 gi|20092551|ref|NP_618626.1| - 5.4e-25 88.3 42.6 1.4e-24 86.9 25.4 3.1 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit TrbC PF04956.8 gi|20092551|ref|NP_618626.1| - 0.082 12.9 0.2 0.082 12.9 0.1 3.6 3 0 0 3 3 3 0 TrbC/VIRB2 family STT3 PF02516.9 gi|20092552|ref|NP_618627.1| - 6.1e-28 98.0 37.9 1e-27 97.2 23.4 2.8 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit TrbC PF04956.8 gi|20092552|ref|NP_618627.1| - 0.014 15.4 1.9 0.082 12.9 0.1 2.9 3 0 0 3 3 3 0 TrbC/VIRB2 family Glycos_transf_1 PF00534.15 gi|20092553|ref|NP_618628.1| - 2.3e-23 82.4 0.0 4.2e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20092553|ref|NP_618628.1| - 1.1e-11 44.9 0.0 2.4e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20092553|ref|NP_618628.1| - 1.5e-09 38.1 0.0 1.2e-08 35.2 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|20092553|ref|NP_618628.1| - 9.4e-06 25.4 0.2 4.4e-05 23.2 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|20092554|ref|NP_618629.1| - 1.5e-30 105.8 0.4 6e-30 103.9 0.3 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|20092554|ref|NP_618629.1| - 4e-24 85.5 0.0 1.2e-23 83.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|20092554|ref|NP_618629.1| - 8.3e-24 84.2 0.2 1.2e-23 83.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|20092554|ref|NP_618629.1| - 2.1e-15 57.0 0.0 4.2e-14 52.8 0.0 2.4 2 1 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|20092554|ref|NP_618629.1| - 4.2e-13 49.3 0.5 4.2e-13 49.3 0.3 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|20092554|ref|NP_618629.1| - 1.4e-05 24.7 0.4 0.0064 16.0 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|20092554|ref|NP_618629.1| - 9.2e-05 22.6 0.0 0.0023 18.1 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 DLH PF01738.13 gi|20092554|ref|NP_618629.1| - 0.056 12.7 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family UPF0180 PF03698.8 gi|20092554|ref|NP_618629.1| - 0.063 13.1 0.2 1 9.2 0.0 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) Glycos_transf_1 PF00534.15 gi|20092555|ref|NP_618630.1| - 1.7e-40 138.2 0.3 2.9e-40 137.4 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20092555|ref|NP_618630.1| - 9.1e-17 61.4 0.0 1.3e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20092555|ref|NP_618630.1| - 8.7e-10 38.7 0.0 2.3e-09 37.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20092555|ref|NP_618630.1| - 3.9e-08 33.2 0.0 8.5e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.16 gi|20092555|ref|NP_618630.1| - 3.2e-06 25.9 0.0 4.8e-06 25.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase family 20 Glycogen_syn PF05693.8 gi|20092555|ref|NP_618630.1| - 0.0054 15.0 0.0 0.0078 14.5 0.0 1.2 1 0 0 1 1 1 1 Glycogen synthase Glycos_transf_2 PF00535.21 gi|20092556|ref|NP_618631.1| - 8.3e-24 84.1 1.7 9e-11 41.7 0.0 2.6 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20092556|ref|NP_618631.1| - 3.9e-15 56.2 0.0 1.4e-07 31.5 0.0 2.3 1 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|20092556|ref|NP_618631.1| - 7.7e-07 28.5 0.1 0.00033 19.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|20092556|ref|NP_618631.1| - 5.6e-06 26.1 0.0 9.5e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|20092556|ref|NP_618631.1| - 0.00064 18.8 2.5 0.036 13.1 0.4 2.7 1 1 1 2 2 2 2 Glycosyltransferase like family 2 rve PF00665.21 gi|20092557|ref|NP_618632.1| - 9.7e-20 70.8 0.0 1.8e-19 70.0 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20092557|ref|NP_618632.1| - 8.1e-07 28.5 0.1 2e-06 27.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20092557|ref|NP_618632.1| - 1.4e-05 24.8 0.2 3.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.1 gi|20092557|ref|NP_618632.1| - 2.3e-05 23.8 0.0 6.7e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|20092557|ref|NP_618632.1| - 2.6e-05 23.7 0.5 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20092557|ref|NP_618632.1| - 0.0087 16.1 0.0 0.23 11.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20092557|ref|NP_618632.1| - 0.01 15.4 0.2 0.04 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Sigma70_r4 PF04545.11 gi|20092557|ref|NP_618632.1| - 0.012 14.8 0.1 0.03 13.6 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20092557|ref|NP_618632.1| - 0.018 14.5 0.0 0.054 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.17 gi|20092557|ref|NP_618632.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20092557|ref|NP_618632.1| - 0.021 14.9 0.0 0.078 13.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20092557|ref|NP_618632.1| - 0.025 14.5 0.2 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20092557|ref|NP_618632.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20092557|ref|NP_618632.1| - 0.071 12.5 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20092557|ref|NP_618632.1| - 0.087 12.3 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 IstB_IS21 PF01695.12 gi|20092558|ref|NP_618633.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20092558|ref|NP_618633.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20092558|ref|NP_618633.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20092558|ref|NP_618633.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20092558|ref|NP_618633.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20092558|ref|NP_618633.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20092558|ref|NP_618633.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20092558|ref|NP_618633.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20092558|ref|NP_618633.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092558|ref|NP_618633.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20092558|ref|NP_618633.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20092558|ref|NP_618633.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20092558|ref|NP_618633.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20092558|ref|NP_618633.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20092558|ref|NP_618633.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20092558|ref|NP_618633.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20092558|ref|NP_618633.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20092558|ref|NP_618633.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20092558|ref|NP_618633.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20092558|ref|NP_618633.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20092558|ref|NP_618633.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20092558|ref|NP_618633.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20092558|ref|NP_618633.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20092558|ref|NP_618633.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20092558|ref|NP_618633.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20092558|ref|NP_618633.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20092558|ref|NP_618633.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20092558|ref|NP_618633.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family MULE PF10551.4 gi|20092559|ref|NP_618634.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20092559|ref|NP_618634.1| - 0.02 13.4 0.0 0.034 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20092559|ref|NP_618634.1| - 0.022 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein C1_1 PF00130.17 gi|20092559|ref|NP_618634.1| - 0.038 13.7 1.0 0.13 12.0 0.7 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DDE_Tnp_ISL3 PF01610.12 gi|20092559|ref|NP_618634.1| - 0.041 13.4 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20092559|ref|NP_618634.1| - 0.092 12.4 1.9 4.9 6.8 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|20092559|ref|NP_618634.1| - 1.7 8.9 9.8 0.19 11.9 2.4 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20092559|ref|NP_618634.1| - 5.9 6.6 6.6 2.5 7.8 2.0 2.3 2 1 0 2 2 2 0 PHD-finger DDE_3 PF13358.1 gi|20092560|ref|NP_618635.1| - 9.8e-05 22.1 0.0 0.0001 22.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease Acid_phosphat_B PF03767.9 gi|20092560|ref|NP_618635.1| - 0.042 13.2 0.1 0.044 13.1 0.0 1.0 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Polysacc_synt PF01943.12 gi|20092562|ref|NP_618637.1| - 5.2e-26 91.5 26.5 5.2e-26 91.5 18.3 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|20092562|ref|NP_618637.1| - 6.2e-21 74.7 52.3 8.4e-18 64.5 15.9 3.7 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|20092562|ref|NP_618637.1| - 1.7e-18 67.0 15.0 1.7e-18 67.0 10.4 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|20092562|ref|NP_618637.1| - 3.6e-11 42.9 4.2 3.6e-11 42.9 2.9 4.6 3 2 2 5 5 5 2 MatE MVIN PF03023.9 gi|20092562|ref|NP_618637.1| - 5.6e-08 31.6 35.1 5.6e-08 31.6 24.4 2.9 1 1 1 2 2 2 1 MviN-like protein PS_pyruv_trans PF04230.8 gi|20092563|ref|NP_618638.1| - 1.9e-21 77.0 0.4 5e-21 75.6 0.3 1.7 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Methyltransf_23 PF13489.1 gi|20092563|ref|NP_618638.1| - 4.6e-17 62.1 0.0 8.7e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092563|ref|NP_618638.1| - 1.3e-07 31.9 0.0 8e-07 29.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092563|ref|NP_618638.1| - 3.1e-07 30.7 0.1 2.9e-06 27.6 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092563|ref|NP_618638.1| - 3.9e-06 26.5 0.9 1.3e-05 24.8 0.1 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|20092563|ref|NP_618638.1| - 0.013 14.2 0.0 0.024 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TFIIS_C PF01096.13 gi|20092563|ref|NP_618638.1| - 0.043 13.4 0.2 0.094 12.3 0.2 1.6 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|20092563|ref|NP_618638.1| - 0.091 12.3 0.2 0.34 10.5 0.1 2.0 1 0 0 1 1 1 0 zinc-ribbon domain NodS PF05401.6 gi|20092563|ref|NP_618638.1| - 0.15 11.4 0.0 0.37 10.1 0.0 1.6 1 0 0 1 1 1 0 Nodulation protein S (NodS) CTP_transf_3 PF02348.14 gi|20092564|ref|NP_618639.1| - 2.8e-29 102.3 0.1 4.3e-29 101.7 0.1 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Hydrolase PF00702.21 gi|20092564|ref|NP_618639.1| - 2.8e-11 44.2 0.2 1.8e-09 38.3 0.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20092564|ref|NP_618639.1| - 3.3e-10 39.9 3.7 6.4e-10 39.0 0.0 2.9 2 1 2 4 4 4 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20092564|ref|NP_618639.1| - 1.1e-06 28.9 1.2 3e-05 24.2 0.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase IspD PF01128.14 gi|20092564|ref|NP_618639.1| - 0.00067 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|20092564|ref|NP_618639.1| - 0.0016 18.5 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain FAD_binding_3 PF01494.14 gi|20092564|ref|NP_618639.1| - 0.052 12.5 0.0 0.091 11.7 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Hydrolase_6 PF13344.1 gi|20092564|ref|NP_618639.1| - 0.08 12.8 0.0 0.21 11.4 0.0 1.9 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase NeuB PF03102.9 gi|20092565|ref|NP_618640.1| - 8.6e-73 244.4 0.0 1e-72 244.1 0.0 1.0 1 0 0 1 1 1 1 NeuB family DUF4277 PF14104.1 gi|20092567|ref|NP_618642.1| - 2.3e-44 150.2 0.0 4.3e-44 149.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20092567|ref|NP_618642.1| - 5.6e-05 22.7 1.1 0.00015 21.4 0.8 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.6 gi|20092567|ref|NP_618642.1| - 0.014 15.7 1.8 0.52 10.6 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1410) LRR_5 PF13306.1 gi|20092567|ref|NP_618642.1| - 0.13 11.9 1.5 8.1 6.1 0.3 2.4 2 0 0 2 2 2 0 Leucine rich repeats (6 copies) DDE_Tnp_1 PF01609.16 gi|20092568|ref|NP_618643.1| - 9.5e-09 35.1 0.1 1.9e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092569|ref|NP_618644.1| - 0.0069 15.9 0.0 0.0077 15.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain NAD_binding_8 PF13450.1 gi|20092572|ref|NP_618647.1| - 4.4e-14 52.2 0.0 6.8e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|20092572|ref|NP_618647.1| - 4.3e-05 22.5 0.0 5.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|20092572|ref|NP_618647.1| - 0.00012 21.1 0.0 0.00012 21.1 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|20092572|ref|NP_618647.1| - 0.00014 21.0 0.0 0.00015 20.9 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Thi4 PF01946.12 gi|20092572|ref|NP_618647.1| - 0.00021 20.4 0.1 0.00027 20.1 0.0 1.1 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|20092572|ref|NP_618647.1| - 0.00026 20.9 0.0 0.00026 20.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|20092572|ref|NP_618647.1| - 0.0016 17.8 0.0 0.0017 17.7 0.0 1.1 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|20092572|ref|NP_618647.1| - 0.0091 15.0 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|20092572|ref|NP_618647.1| - 0.013 15.2 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|20092572|ref|NP_618647.1| - 0.013 15.5 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|20092572|ref|NP_618647.1| - 0.015 13.5 0.0 0.016 13.4 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like FAD_oxidored PF12831.2 gi|20092572|ref|NP_618647.1| - 0.028 13.5 0.0 0.028 13.5 0.0 1.0 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|20092572|ref|NP_618647.1| - 0.028 14.8 0.0 0.036 14.4 0.0 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|20092572|ref|NP_618647.1| - 0.035 12.5 0.0 0.035 12.5 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|20092572|ref|NP_618647.1| - 0.061 12.8 2.0 2.1 7.9 1.4 2.0 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|20092572|ref|NP_618647.1| - 0.12 11.2 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NTP_transferase PF00483.18 gi|20092573|ref|NP_618648.1| - 5e-54 183.2 0.0 5.8e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|20092573|ref|NP_618648.1| - 2.5e-13 50.4 0.0 2.9e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|20092573|ref|NP_618648.1| - 0.07 12.7 0.1 0.096 12.3 0.0 1.3 1 1 0 1 1 1 0 Cytidylyltransferase RmlD_sub_bind PF04321.12 gi|20092574|ref|NP_618649.1| - 7.9e-89 297.3 0.0 1e-88 296.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|20092574|ref|NP_618649.1| - 1.1e-12 47.9 0.0 3.6e-12 46.2 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|20092574|ref|NP_618649.1| - 3.4e-08 32.7 0.0 3e-07 29.6 0.0 2.4 1 1 1 3 3 3 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|20092574|ref|NP_618649.1| - 6.3e-06 25.0 0.1 2.7e-05 22.9 0.0 1.9 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|20092574|ref|NP_618649.1| - 0.00013 20.9 0.0 0.00023 20.1 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|20092575|ref|NP_618650.1| - 3.9e-66 222.8 0.0 5.2e-66 222.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|20092575|ref|NP_618650.1| - 6.2e-24 84.4 0.0 1e-22 80.3 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|20092575|ref|NP_618650.1| - 1.5e-23 82.8 0.0 2e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|20092575|ref|NP_618650.1| - 4.4e-18 65.1 0.0 5.8e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|20092575|ref|NP_618650.1| - 7.8e-18 64.2 0.1 4.5e-16 58.5 0.1 2.4 1 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|20092575|ref|NP_618650.1| - 6e-06 26.3 0.0 9.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|20092575|ref|NP_618650.1| - 0.0028 16.9 0.0 0.0041 16.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family dTDP_sugar_isom PF00908.12 gi|20092576|ref|NP_618651.1| - 1.1e-69 233.3 0.0 1.2e-69 233.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase G6PD_C PF02781.11 gi|20092576|ref|NP_618651.1| - 0.045 12.6 0.0 0.067 12.0 0.0 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, C-terminal domain MannoseP_isomer PF01050.13 gi|20092577|ref|NP_618652.1| - 7.2e-55 184.7 0.0 1.1e-54 184.1 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|20092577|ref|NP_618652.1| - 1.4e-53 181.7 0.0 2.7e-53 180.8 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|20092577|ref|NP_618652.1| - 5.8e-11 41.7 0.1 1.1e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|20092577|ref|NP_618652.1| - 1.4e-06 28.4 0.0 6.8e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 MobA-like NTP transferase domain Cupin_6 PF12852.2 gi|20092577|ref|NP_618652.1| - 0.0047 16.5 0.0 0.0082 15.7 0.0 1.3 1 0 0 1 1 1 1 Cupin IspD PF01128.14 gi|20092577|ref|NP_618652.1| - 0.015 14.8 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AraC_binding PF02311.14 gi|20092577|ref|NP_618652.1| - 0.016 14.8 0.1 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain NosD PF05048.8 gi|20092578|ref|NP_618653.1| - 5.1e-58 196.0 28.1 6.1e-58 195.7 19.5 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20092578|ref|NP_618653.1| - 1.1e-25 90.2 53.7 1.1e-14 54.5 20.5 2.1 1 1 1 2 2 2 2 Right handed beta helix region Pectinesterase PF01095.14 gi|20092578|ref|NP_618653.1| - 0.0082 14.7 0.1 0.011 14.3 0.1 1.2 1 0 0 1 1 1 1 Pectinesterase Pectate_lyase_3 PF12708.2 gi|20092578|ref|NP_618653.1| - 0.095 12.8 22.5 0.096 12.7 6.9 2.9 1 1 1 2 2 2 0 Pectate lyase superfamily protein Methyltransf_31 PF13847.1 gi|20092579|ref|NP_618654.1| - 2.7e-42 143.9 0.0 4e-42 143.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092579|ref|NP_618654.1| - 9.4e-25 86.9 0.1 2.4e-24 85.6 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092579|ref|NP_618654.1| - 9.8e-22 77.1 0.1 1.6e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|20092579|ref|NP_618654.1| - 3.7e-18 66.1 0.0 7.6e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092579|ref|NP_618654.1| - 7.8e-17 61.4 0.0 1.9e-16 60.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092579|ref|NP_618654.1| - 4.6e-16 58.9 0.0 6.4e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092579|ref|NP_618654.1| - 1.4e-14 54.1 0.0 2.4e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092579|ref|NP_618654.1| - 7.1e-13 48.8 0.0 1.3e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20092579|ref|NP_618654.1| - 1.7e-12 47.3 0.0 3.2e-12 46.4 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|20092579|ref|NP_618654.1| - 1.8e-10 40.4 0.0 3.2e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|20092579|ref|NP_618654.1| - 1.4e-08 34.5 0.0 2.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|20092579|ref|NP_618654.1| - 3.6e-07 29.5 0.0 5.3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|20092579|ref|NP_618654.1| - 4.7e-07 29.6 0.0 7.4e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|20092579|ref|NP_618654.1| - 1.8e-05 24.4 0.2 3.7e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|20092579|ref|NP_618654.1| - 2.9e-05 23.2 0.0 4.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|20092579|ref|NP_618654.1| - 0.00011 21.8 0.0 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|20092579|ref|NP_618654.1| - 0.0018 17.3 0.0 0.0059 15.6 0.0 1.8 1 1 0 1 1 1 1 Putative methyltransferase DOT1 PF08123.8 gi|20092579|ref|NP_618654.1| - 0.0079 15.5 0.1 0.012 14.9 0.1 1.4 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_3 PF01596.12 gi|20092579|ref|NP_618654.1| - 0.0091 15.0 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|20092579|ref|NP_618654.1| - 0.0097 15.4 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.14 gi|20092579|ref|NP_618654.1| - 0.019 14.9 0.0 0.033 14.1 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase GidB PF02527.10 gi|20092579|ref|NP_618654.1| - 0.029 13.4 0.0 0.066 12.3 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G RrnaAD PF00398.15 gi|20092579|ref|NP_618654.1| - 0.036 13.0 0.0 0.051 12.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase N6_N4_Mtase PF01555.13 gi|20092579|ref|NP_618654.1| - 0.061 12.7 0.0 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 DNA methylase CheR PF01739.13 gi|20092579|ref|NP_618654.1| - 0.084 12.1 0.0 0.84 8.8 0.0 2.4 2 1 1 3 3 3 0 CheR methyltransferase, SAM binding domain HTH_5 PF01022.15 gi|20092580|ref|NP_618655.1| - 1.8e-14 53.1 0.1 3e-14 52.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20092580|ref|NP_618655.1| - 1.8e-13 50.0 0.0 2.6e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|20092580|ref|NP_618655.1| - 0.00077 19.5 0.1 0.0017 18.4 0.1 1.5 1 1 0 1 1 1 1 Penicillinase repressor HTH_36 PF13730.1 gi|20092580|ref|NP_618655.1| - 0.0012 18.9 0.1 0.0022 18.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20092580|ref|NP_618655.1| - 0.0032 16.8 0.0 0.36 10.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|20092580|ref|NP_618655.1| - 0.0047 16.9 0.1 0.0071 16.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|20092580|ref|NP_618655.1| - 0.041 13.3 0.1 0.15 11.6 0.1 1.8 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_27 PF13463.1 gi|20092580|ref|NP_618655.1| - 0.073 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|20092580|ref|NP_618655.1| - 0.077 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Wound_ind PF08186.6 gi|20092581|ref|NP_618656.1| - 0.72 9.8 4.1 1.7 8.6 2.8 1.7 1 1 0 1 1 1 0 Wound-inducible basic protein family NAD_binding_1 PF00175.16 gi|20092582|ref|NP_618657.1| - 7.8e-18 65.0 0.0 1.7e-17 63.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|20092582|ref|NP_618657.1| - 2.4e-12 46.1 3.7 4.5e-12 45.2 2.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|20092582|ref|NP_618657.1| - 7.7e-05 22.7 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Cpn10 PF00166.16 gi|20092582|ref|NP_618657.1| - 0.022 14.6 2.1 0.066 13.1 0.0 2.5 3 0 0 3 3 3 0 Chaperonin 10 Kd subunit Pept_tRNA_hydro PF01195.14 gi|20092582|ref|NP_618657.1| - 0.063 12.7 0.1 0.13 11.7 0.1 1.4 2 0 0 2 2 2 0 Peptidyl-tRNA hydrolase Fer4_20 PF14691.1 gi|20092583|ref|NP_618658.1| - 1.7e-44 149.9 6.3 2.8e-44 149.2 4.4 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|20092583|ref|NP_618658.1| - 1.1e-18 67.8 6.3 3.8e-16 59.5 4.4 4.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20092583|ref|NP_618658.1| - 3.3e-16 59.4 4.6 9e-08 32.4 0.2 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|20092583|ref|NP_618658.1| - 1.9e-15 57.5 0.2 5.5e-06 26.5 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|20092583|ref|NP_618658.1| - 1.7e-09 37.8 0.0 0.00051 20.2 0.0 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|20092583|ref|NP_618658.1| - 1.4e-08 34.6 1.1 2.7e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|20092583|ref|NP_618658.1| - 2.2e-07 30.5 9.5 0.001 18.6 0.1 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|20092583|ref|NP_618658.1| - 2.6e-07 29.9 0.4 3.1e-06 26.4 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|20092583|ref|NP_618658.1| - 7.6e-07 28.5 3.0 0.00011 21.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|20092583|ref|NP_618658.1| - 7.3e-06 25.0 1.3 7.3e-06 25.0 0.9 3.0 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|20092583|ref|NP_618658.1| - 9.6e-06 24.6 3.8 0.00031 19.7 0.0 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|20092583|ref|NP_618658.1| - 2.2e-05 23.1 0.5 2.2e-05 23.1 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.19 gi|20092583|ref|NP_618658.1| - 6.9e-05 21.9 5.6 7.3e-05 21.8 0.1 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Shikimate_DH PF01488.15 gi|20092583|ref|NP_618658.1| - 0.00012 22.1 3.2 0.31 11.1 0.0 4.5 5 0 0 5 5 5 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|20092583|ref|NP_618658.1| - 0.00024 20.2 0.6 0.00085 18.4 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain ELFV_dehydrog PF00208.16 gi|20092583|ref|NP_618658.1| - 0.00025 20.6 0.1 0.21 11.1 0.0 2.2 2 0 0 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Oxidored_nitro PF00148.14 gi|20092583|ref|NP_618658.1| - 0.00026 19.7 2.5 0.047 12.3 0.0 2.5 2 1 1 3 3 3 2 Nitrogenase component 1 type Oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|20092583|ref|NP_618658.1| - 0.00039 19.8 0.1 0.0071 15.7 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|20092583|ref|NP_618658.1| - 0.00045 19.4 0.0 0.97 8.5 0.0 3.0 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ-1_PfpI PF01965.19 gi|20092583|ref|NP_618658.1| - 0.00069 19.1 0.5 0.18 11.2 0.0 2.8 3 0 0 3 3 2 1 DJ-1/PfpI family NAD_binding_10 PF13460.1 gi|20092583|ref|NP_618658.1| - 0.00076 19.5 4.8 2.7 7.9 0.0 4.2 3 2 1 4 4 4 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|20092583|ref|NP_618658.1| - 0.0019 17.9 0.0 0.034 13.8 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|20092583|ref|NP_618658.1| - 0.002 18.5 2.6 0.97 9.8 0.2 3.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FMO-like PF00743.14 gi|20092583|ref|NP_618658.1| - 0.0028 15.9 0.0 0.82 7.7 0.0 2.2 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like Amino_oxidase PF01593.19 gi|20092583|ref|NP_618658.1| - 0.0044 16.1 3.9 0.0058 15.7 0.1 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase CPSase_L_chain PF00289.17 gi|20092583|ref|NP_618658.1| - 0.0064 16.5 0.1 3.3 7.8 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain PALP PF00291.20 gi|20092583|ref|NP_618658.1| - 0.013 14.8 0.1 0.7 9.0 0.0 2.9 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme NAD_binding_9 PF13454.1 gi|20092583|ref|NP_618658.1| - 0.015 15.0 0.3 0.068 12.9 0.1 2.2 3 0 0 3 3 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|20092583|ref|NP_618658.1| - 0.016 14.8 0.3 0.18 11.4 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|20092583|ref|NP_618658.1| - 0.029 13.2 0.0 2.3 7.0 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) YjeF_N PF03853.10 gi|20092583|ref|NP_618658.1| - 0.063 12.8 0.0 6.5 6.3 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus TrkA_N PF02254.13 gi|20092583|ref|NP_618658.1| - 0.096 12.6 1.5 9.9 6.1 0.0 2.9 3 0 0 3 3 2 0 TrkA-N domain AdoHcyase_NAD PF00670.16 gi|20092583|ref|NP_618658.1| - 0.33 10.7 6.1 4.6 7.0 0.0 2.7 3 0 0 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Trp_halogenase PF04820.9 gi|20092583|ref|NP_618658.1| - 0.35 9.4 3.8 0.13 10.8 0.2 1.8 2 0 0 2 2 2 0 Tryptophan halogenase TPR_2 PF07719.12 gi|20092584|ref|NP_618659.1| - 0.0024 17.6 2.4 16 5.7 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat DUF4398 PF14346.1 gi|20092584|ref|NP_618659.1| - 0.025 14.6 0.0 0.025 14.6 0.0 2.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4398) TPR_11 PF13414.1 gi|20092584|ref|NP_618659.1| - 0.045 13.4 3.1 1.1 8.9 0.1 3.5 4 0 0 4 4 4 0 TPR repeat DUF730 PF05325.6 gi|20092584|ref|NP_618659.1| - 0.051 13.3 1.1 0.11 12.3 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF730) CSTF_C PF14304.1 gi|20092584|ref|NP_618659.1| - 0.14 11.4 0.0 0.3 10.3 0.0 1.5 1 0 0 1 1 1 0 Transcription termination and cleavage factor C-terminal SusE PF14292.1 gi|20092584|ref|NP_618659.1| - 0.18 11.6 2.3 0.25 11.1 0.4 2.0 2 0 0 2 2 2 0 SusE outer membrane protein Nitroreductase PF00881.19 gi|20092585|ref|NP_618660.1| - 7.3e-32 110.4 0.0 9.4e-32 110.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|20092585|ref|NP_618660.1| - 0.031 13.4 0.1 0.36 9.9 0.1 2.1 1 1 0 1 1 1 0 Putative TM nitroreductase IlvN PF07991.7 gi|20092586|ref|NP_618661.1| - 1e-80 268.8 0.9 1.4e-80 268.4 0.6 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|20092586|ref|NP_618661.1| - 1.4e-54 183.9 0.1 2e-54 183.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|20092586|ref|NP_618661.1| - 6.6e-09 36.0 0.1 2.2e-08 34.3 0.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|20092586|ref|NP_618661.1| - 9.3e-09 34.6 0.0 1.9e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|20092586|ref|NP_618661.1| - 1.8e-07 31.1 0.1 3.1e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|20092586|ref|NP_618661.1| - 0.00028 20.7 0.0 0.00055 19.8 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.14 gi|20092586|ref|NP_618661.1| - 0.0027 18.1 0.0 0.0064 16.9 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain ApbA PF02558.11 gi|20092586|ref|NP_618661.1| - 0.01 15.3 0.0 0.023 14.1 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Oxidored_nitro PF00148.14 gi|20092586|ref|NP_618661.1| - 0.011 14.4 0.1 0.14 10.7 0.0 2.1 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Nitro_FeMo-Co PF02579.12 gi|20092586|ref|NP_618661.1| - 0.013 15.6 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor GFO_IDH_MocA PF01408.17 gi|20092586|ref|NP_618661.1| - 0.022 15.2 0.0 0.043 14.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|20092586|ref|NP_618661.1| - 0.062 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Rossmann-like PF10727.4 gi|20092586|ref|NP_618661.1| - 0.07 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|20092586|ref|NP_618661.1| - 0.071 12.8 1.0 2.7 7.6 0.1 2.7 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|20092586|ref|NP_618661.1| - 0.081 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding ALS_ss_C PF10369.4 gi|20092587|ref|NP_618662.1| - 3.6e-33 113.1 3.2 3.6e-33 113.1 2.2 1.9 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|20092587|ref|NP_618662.1| - 2.3e-21 75.3 0.5 5.8e-20 70.8 0.1 2.4 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|20092587|ref|NP_618662.1| - 2.3e-16 58.9 2.1 4.7e-15 54.6 0.2 2.7 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|20092587|ref|NP_618662.1| - 6.5e-06 26.4 1.2 6.5e-06 26.4 0.8 1.8 2 1 0 2 2 2 1 ACT domain YbbR PF07949.7 gi|20092587|ref|NP_618662.1| - 0.016 15.2 4.6 0.94 9.6 0.0 2.3 2 0 0 2 2 2 0 YbbR-like protein ACT_6 PF13740.1 gi|20092587|ref|NP_618662.1| - 0.022 14.4 0.6 7.3 6.3 0.1 3.2 2 2 0 2 2 2 0 ACT domain NIL PF09383.5 gi|20092587|ref|NP_618662.1| - 0.044 13.3 0.1 0.65 9.6 0.0 2.3 2 0 0 2 2 2 0 NIL domain Nucleo_P87 PF07267.6 gi|20092587|ref|NP_618662.1| - 0.11 11.1 0.3 0.12 10.9 0.2 1.0 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 SLS PF14611.1 gi|20092587|ref|NP_618662.1| - 0.14 11.5 0.6 4.9 6.5 0.0 2.2 1 1 0 2 2 2 0 Mitochondrial inner-membrane-bound regulator Secretin_N PF03958.12 gi|20092587|ref|NP_618662.1| - 0.15 12.2 0.8 3.3 7.9 0.5 2.7 1 1 0 1 1 1 0 Bacterial type II/III secretion system short domain TPP_enzyme_N PF02776.13 gi|20092588|ref|NP_618663.1| - 3.7e-63 212.1 0.0 7.7e-61 204.5 0.0 3.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|20092588|ref|NP_618663.1| - 9.4e-57 190.8 0.1 8.5e-56 187.7 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|20092588|ref|NP_618663.1| - 1.2e-49 167.5 0.2 3.9e-49 165.9 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|20092588|ref|NP_618663.1| - 0.017 14.6 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg XFP_N PF09364.5 gi|20092588|ref|NP_618663.1| - 0.077 11.5 0.0 0.13 10.7 0.0 1.3 1 0 0 1 1 1 0 XFP N-terminal domain HMGL-like PF00682.14 gi|20092589|ref|NP_618664.1| - 1.2e-70 237.8 0.9 1.2e-70 237.8 0.6 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|20092589|ref|NP_618664.1| - 3.6e-37 127.1 2.2 6.9e-37 126.2 1.5 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Phage_integrase PF00589.17 gi|20092590|ref|NP_618665.1| - 2.4e-25 89.1 0.1 4.5e-25 88.3 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family zinc_ribbon_2 PF13240.1 gi|20092590|ref|NP_618665.1| - 4.5e-05 22.7 2.8 7.6e-05 22.0 2.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain GAD PF02938.9 gi|20092590|ref|NP_618665.1| - 0.00019 21.5 0.5 0.045 13.9 0.0 3.5 3 0 0 3 3 3 1 GAD domain DZR PF12773.2 gi|20092590|ref|NP_618665.1| - 0.00035 20.3 1.5 0.00061 19.5 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|20092590|ref|NP_618665.1| - 0.00055 19.0 1.5 0.00087 18.4 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF3435 PF11917.3 gi|20092590|ref|NP_618665.1| - 0.00067 18.4 0.1 0.001 17.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) DUF4198 PF10670.4 gi|20092590|ref|NP_618665.1| - 0.017 15.1 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Phage_int_SAM_4 PF13495.1 gi|20092590|ref|NP_618665.1| - 0.023 15.0 0.4 0.17 12.2 0.0 2.5 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Tnp_zf-ribbon_2 PF13842.1 gi|20092590|ref|NP_618665.1| - 0.1 12.9 1.2 0.19 12.1 0.8 1.4 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF1660 PF07874.6 gi|20092590|ref|NP_618665.1| - 0.11 12.7 0.4 1.8 8.8 0.1 2.6 2 0 0 2 2 2 0 Prophage protein (DUF1660) Preseq_ALAS PF09029.5 gi|20092591|ref|NP_618666.1| - 0.045 13.7 0.9 0.064 13.2 0.6 1.5 1 1 0 1 1 1 0 5-aminolevulinate synthase presequence Rep_fac-A_C PF08646.5 gi|20092591|ref|NP_618666.1| - 0.15 11.7 0.9 0.3 10.7 0.6 1.4 1 0 0 1 1 1 0 Replication factor-A C terminal domain Myosin_N PF02736.14 gi|20092593|ref|NP_618668.1| - 0.0035 16.9 4.4 0.0097 15.5 3.0 1.8 1 0 0 1 1 1 1 Myosin N-terminal SH3-like domain DUF772 PF05598.6 gi|20092594|ref|NP_618669.1| - 1.3e-17 63.4 0.1 2.8e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.1 gi|20092595|ref|NP_618670.1| - 4.8e-24 84.7 4.2 6.5e-24 84.3 2.9 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092595|ref|NP_618670.1| - 4.7e-13 49.1 0.4 6.3e-13 48.7 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|20092595|ref|NP_618670.1| - 0.00017 21.3 1.2 0.0004 20.1 0.0 2.1 2 1 1 3 3 3 1 Transposase DDE domain Thioredoxin_2 PF13098.1 gi|20092595|ref|NP_618670.1| - 0.03 14.5 0.6 0.056 13.6 0.4 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain SelP_N PF04592.9 gi|20092595|ref|NP_618670.1| - 0.04 13.3 0.9 0.06 12.7 0.6 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region DDE_Tnp_1 PF01609.16 gi|20092596|ref|NP_618671.1| - 1.1e-10 41.4 1.6 6e-10 39.0 1.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain DUF2341 PF10102.4 gi|20092597|ref|NP_618672.1| - 2.5e-18 65.9 0.9 3.8e-18 65.4 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) DUF2089 PF09862.4 gi|20092600|ref|NP_618675.1| - 0.059 13.1 0.0 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) PhageMin_Tail PF10145.4 gi|20092601|ref|NP_618676.1| - 1.2e-22 80.5 18.1 1.2e-22 80.5 12.6 4.4 2 2 1 3 3 3 1 Phage-related minor tail protein ANTAR PF03861.9 gi|20092601|ref|NP_618676.1| - 0.034 13.7 0.2 0.53 9.8 0.0 2.4 2 0 0 2 2 2 0 ANTAR domain Latrotoxin_C PF15658.1 gi|20092601|ref|NP_618676.1| - 0.066 13.0 0.4 6.4 6.6 0.0 2.8 3 0 0 3 3 3 0 Latrotoxin C-terminal domain Rifin_STEVOR PF02009.11 gi|20092601|ref|NP_618676.1| - 0.5 9.9 2.4 1.9 8.0 1.7 2.0 1 0 0 1 1 1 0 Rifin/stevor family Fib_alpha PF08702.5 gi|20092601|ref|NP_618676.1| - 1 9.4 2.2 3.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family TPR_11 PF13414.1 gi|20092602|ref|NP_618677.1| - 0.093 12.3 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 TPR repeat DUF3168 PF11367.3 gi|20092605|ref|NP_618680.1| - 8.9e-08 32.3 0.0 1e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) HK97-gp10_like PF04883.7 gi|20092606|ref|NP_618681.1| - 1.2e-05 26.1 1.2 0.00014 22.6 0.1 2.0 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component DUF4071 PF13281.1 gi|20092607|ref|NP_618682.1| - 0.00019 20.4 0.5 0.00022 20.1 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4071) Cast PF10174.4 gi|20092607|ref|NP_618682.1| - 0.0015 16.6 1.8 0.0016 16.5 1.2 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Tropomyosin_1 PF12718.2 gi|20092607|ref|NP_618682.1| - 0.026 14.3 1.5 0.031 14.1 1.0 1.1 1 0 0 1 1 1 0 Tropomyosin like Cep57_CLD_2 PF14197.1 gi|20092607|ref|NP_618682.1| - 0.034 14.0 0.1 0.034 14.0 0.1 1.8 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Val_tRNA-synt_C PF10458.4 gi|20092607|ref|NP_618682.1| - 0.05 13.6 1.3 0.12 12.5 0.3 1.9 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm Tmemb_cc2 PF10267.4 gi|20092607|ref|NP_618682.1| - 0.059 11.9 0.3 0.064 11.8 0.2 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF3186 PF11382.3 gi|20092607|ref|NP_618682.1| - 0.085 11.9 0.0 0.094 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) GreA_GreB_N PF03449.10 gi|20092607|ref|NP_618682.1| - 0.14 12.1 1.3 0.98 9.5 0.7 2.0 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal Prefoldin_2 PF01920.15 gi|20092607|ref|NP_618682.1| - 0.29 10.9 3.0 0.59 9.9 0.4 2.0 1 1 1 2 2 2 0 Prefoldin subunit Tox-GHH PF15636.1 gi|20092608|ref|NP_618683.1| - 0.16 11.5 0.5 5.6 6.6 0.1 3.2 2 1 0 2 2 2 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin TOBE_2 PF08402.5 gi|20092611|ref|NP_618686.1| - 0.024 14.5 0.1 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 TOBE domain Ribosomal_60s PF00428.14 gi|20092611|ref|NP_618686.1| - 0.35 11.3 6.3 0.43 11.0 4.4 1.2 1 0 0 1 1 1 0 60s Acidic ribosomal protein DUF2057 PF09829.4 gi|20092611|ref|NP_618686.1| - 0.4 10.3 4.0 0.48 10.0 2.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2057) Linocin_M18 PF04454.7 gi|20092612|ref|NP_618687.1| - 1.4e-13 50.3 0.0 1.8e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 Encapsulating protein for peroxidase TPR_MLP1_2 PF07926.7 gi|20092614|ref|NP_618689.1| - 0.0097 15.6 0.2 0.02 14.6 0.2 1.6 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|20092614|ref|NP_618689.1| - 0.033 13.4 0.8 0.054 12.6 0.6 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.16 gi|20092614|ref|NP_618689.1| - 0.045 13.7 1.6 0.1 12.5 1.1 1.6 1 0 0 1 1 1 0 bZIP transcription factor DivIC PF04977.10 gi|20092614|ref|NP_618689.1| - 0.085 12.3 0.8 0.2 11.1 0.5 1.6 1 0 0 1 1 1 0 Septum formation initiator GrpE PF01025.14 gi|20092614|ref|NP_618689.1| - 0.097 12.2 5.0 0.14 11.7 3.1 1.4 1 1 0 1 1 1 0 GrpE DUF1640 PF07798.6 gi|20092614|ref|NP_618689.1| - 0.29 11.1 2.1 0.79 9.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) HALZ PF02183.13 gi|20092614|ref|NP_618689.1| - 0.79 9.4 3.3 4.8 6.9 2.3 2.2 1 1 0 1 1 1 0 Homeobox associated leucine zipper DUF4277 PF14104.1 gi|20092616|ref|NP_618691.1| - 3.9e-41 139.8 0.0 9e-41 138.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|20092616|ref|NP_618691.1| - 1.6e-10 40.9 0.1 2.5e-09 37.0 0.0 2.2 1 1 0 1 1 1 1 Transposase DDE domain Imm42 PF15601.1 gi|20092616|ref|NP_618691.1| - 0.02 14.3 0.5 0.053 12.9 0.3 1.7 1 0 0 1 1 1 0 Immunity protein 42 DUF848 PF05852.6 gi|20092617|ref|NP_618692.1| - 0.0023 17.7 0.1 0.0032 17.3 0.1 1.1 1 0 0 1 1 1 1 Gammaherpesvirus protein of unknown function (DUF848) WTF PF03303.8 gi|20092617|ref|NP_618692.1| - 0.088 12.2 5.4 0.23 10.8 3.7 1.7 1 0 0 1 1 1 0 WTF protein Phage_Mu_F PF04233.9 gi|20092619|ref|NP_618694.1| - 3.4e-10 40.4 0.1 1.4e-09 38.4 0.0 2.1 2 0 0 2 2 2 1 Phage Mu protein F like protein DUF2874 PF11396.3 gi|20092619|ref|NP_618694.1| - 0.0037 17.1 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2874) MerR_2 PF13591.1 gi|20092620|ref|NP_618695.1| - 0.035 13.6 0.1 0.31 10.6 0.0 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein DUF4140 PF13600.1 gi|20092621|ref|NP_618696.1| - 0.094 13.1 0.1 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DivIVA PF05103.8 gi|20092621|ref|NP_618696.1| - 0.1 12.6 0.6 0.12 12.3 0.4 1.1 1 0 0 1 1 1 0 DivIVA protein Ribosomal_L12 PF00542.14 gi|20092621|ref|NP_618696.1| - 0.15 12.1 0.6 0.32 11.0 0.3 1.7 1 1 1 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain Terminase_6 PF03237.10 gi|20092622|ref|NP_618697.1| - 3.2e-122 408.0 0.0 3.7e-122 407.8 0.0 1.0 1 0 0 1 1 1 1 Terminase-like family LEF-8 PF04941.7 gi|20092623|ref|NP_618698.1| - 0.056 11.1 0.0 0.064 10.9 0.0 1.0 1 0 0 1 1 1 0 Late expression factor 8 (LEF-8) TSA PF03249.8 gi|20092623|ref|NP_618698.1| - 0.089 11.3 0.1 0.099 11.1 0.0 1.0 1 0 0 1 1 1 0 Type specific antigen HTH_Tnp_1 PF01527.15 gi|20092624|ref|NP_618699.1| - 0.00012 21.9 0.1 0.00026 20.8 0.1 1.5 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|20092624|ref|NP_618699.1| - 0.00019 20.9 0.1 0.00083 18.9 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20092624|ref|NP_618699.1| - 0.0011 18.8 0.0 0.0024 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|20092624|ref|NP_618699.1| - 0.0035 17.1 0.1 0.012 15.4 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.1 gi|20092624|ref|NP_618699.1| - 0.0064 16.6 0.0 0.024 14.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|20092624|ref|NP_618699.1| - 0.05 13.0 0.0 0.29 10.6 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 MCM PF00493.18 gi|20092625|ref|NP_618700.1| - 1.4e-122 408.6 0.0 1.8e-122 408.2 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|20092625|ref|NP_618700.1| - 4.9e-16 59.3 0.1 1.6e-15 57.6 0.1 1.9 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|20092625|ref|NP_618700.1| - 1.2e-05 24.6 0.1 0.00015 21.0 0.0 2.2 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|20092625|ref|NP_618700.1| - 0.057 13.1 0.0 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF3113 PF11310.3 gi|20092625|ref|NP_618700.1| - 0.13 11.9 0.2 0.33 10.6 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3113) D5_N PF08706.6 gi|20092626|ref|NP_618701.1| - 0.032 14.2 0.3 0.038 14.0 0.2 1.1 1 0 0 1 1 1 0 D5 N terminal like Tox-URI2 PF15653.1 gi|20092626|ref|NP_618701.1| - 0.11 12.6 1.1 0.19 11.9 0.7 1.4 1 0 0 1 1 1 0 URI fold toxin 2 HR1 PF02185.11 gi|20092627|ref|NP_618702.1| - 0.0057 16.3 0.1 0.11 12.2 0.0 2.0 2 0 0 2 2 2 1 Hr1 repeat DUF4279 PF14106.1 gi|20092627|ref|NP_618702.1| - 0.03 14.1 0.9 1.4 8.7 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) CENP-F_leu_zip PF10473.4 gi|20092627|ref|NP_618702.1| - 0.072 12.9 0.4 0.34 10.7 0.0 1.8 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF466 PF04328.8 gi|20092628|ref|NP_618703.1| - 0.11 12.3 0.1 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF466) DZR PF12773.2 gi|20092629|ref|NP_618704.1| - 0.013 15.3 3.7 0.47 10.3 0.0 2.7 2 1 1 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|20092629|ref|NP_618704.1| - 0.049 13.1 5.7 0.17 11.3 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20092629|ref|NP_618704.1| - 0.077 12.8 2.1 0.73 9.6 0.0 2.7 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|20092629|ref|NP_618704.1| - 0.13 12.5 1.5 3 8.2 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|20092629|ref|NP_618704.1| - 0.25 10.5 6.2 0.65 9.2 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20092629|ref|NP_618704.1| - 0.26 10.9 4.4 2.8 7.6 0.2 2.6 3 0 0 3 3 3 0 Putative transposase DNA-binding domain YhfH PF14149.1 gi|20092629|ref|NP_618704.1| - 1.4 8.7 4.7 13 5.6 0.1 3.2 3 0 0 3 3 3 0 YhfH-like protein DUF3797 PF12677.2 gi|20092629|ref|NP_618704.1| - 6.7 6.4 6.5 8.1 6.1 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) TPR_12 PF13424.1 gi|20092635|ref|NP_618710.1| - 2.3e-05 24.2 0.2 4.1e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092635|ref|NP_618710.1| - 5.4e-05 22.8 1.2 0.0001 21.9 0.8 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092635|ref|NP_618710.1| - 0.00068 19.2 0.9 0.0011 18.5 0.6 1.3 1 0 0 1 1 1 1 TPR repeat TPR_1 PF00515.23 gi|20092635|ref|NP_618710.1| - 0.0011 18.4 0.9 0.0018 17.7 0.6 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092635|ref|NP_618710.1| - 0.0018 18.5 0.3 0.0062 16.8 0.1 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092635|ref|NP_618710.1| - 0.0068 16.9 0.2 0.14 12.8 0.1 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092635|ref|NP_618710.1| - 0.013 15.2 0.7 0.025 14.3 0.5 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat PocR PF10114.4 gi|20092635|ref|NP_618710.1| - 0.018 14.1 0.2 0.023 13.8 0.1 1.2 1 0 0 1 1 1 0 Sensory domain found in PocR Lumazine_bd PF12870.2 gi|20092635|ref|NP_618710.1| - 0.15 12.1 2.5 0.21 11.6 0.5 1.9 2 0 0 2 2 2 0 Lumazine-binding domain HSDR_N_2 PF13588.1 gi|20092636|ref|NP_618711.1| - 2.1e-14 53.2 0.0 4.4e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|20092636|ref|NP_618711.1| - 7.3e-14 51.9 3.5 1.2e-10 41.4 0.0 3.2 2 2 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.1 gi|20092636|ref|NP_618711.1| - 0.0054 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily rve PF00665.21 gi|20092637|ref|NP_618712.1| - 8.8e-14 51.6 0.0 1.9e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20092637|ref|NP_618712.1| - 4.9e-06 25.9 0.1 0.00012 21.5 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20092637|ref|NP_618712.1| - 8.1e-05 22.7 0.0 0.00018 21.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20092637|ref|NP_618712.1| - 9.1e-05 21.9 0.2 0.00022 20.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20092637|ref|NP_618712.1| - 0.028 14.4 0.2 0.061 13.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20092637|ref|NP_618712.1| - 0.083 12.4 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal NHL PF01436.16 gi|20092638|ref|NP_618713.1| - 3.1e-60 197.1 11.6 1e-11 44.1 0.1 6.6 6 0 0 6 6 6 6 NHL repeat PKD PF00801.15 gi|20092638|ref|NP_618713.1| - 4e-28 96.9 9.9 2.1e-15 56.2 0.4 2.5 2 0 0 2 2 2 2 PKD domain SGL PF08450.7 gi|20092638|ref|NP_618713.1| - 5.5e-19 68.5 4.1 7.5e-06 25.4 0.1 5.0 2 2 2 4 4 4 4 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|20092638|ref|NP_618713.1| - 9.8e-17 60.4 30.2 0.00029 20.5 0.3 6.7 6 0 0 6 6 6 6 Beta-propeller repeat SdiA-regulated PF06977.6 gi|20092638|ref|NP_618713.1| - 2.8e-07 29.7 1.6 0.0029 16.5 0.0 4.3 3 1 2 5 5 5 1 SdiA-regulated Ldl_recept_b PF00058.12 gi|20092638|ref|NP_618713.1| - 1.7e-06 28.2 0.1 9.6 6.6 0.0 5.1 4 1 0 4 4 4 1 Low-density lipoprotein receptor repeat class B Phytase-like PF13449.1 gi|20092638|ref|NP_618713.1| - 0.00026 20.3 0.0 0.0031 16.8 0.0 2.0 1 1 1 2 2 2 1 Esterase-like activity of phytase Wzy_C PF04932.10 gi|20092638|ref|NP_618713.1| - 0.0048 16.7 1.0 0.0048 16.7 0.7 2.7 2 0 0 2 2 2 1 O-Antigen ligase O-antigen_lig PF13425.1 gi|20092638|ref|NP_618713.1| - 0.097 12.6 7.3 0.2 11.6 0.3 3.4 3 0 0 3 3 3 0 O-antigen ligase like membrane protein OppC_N PF12911.2 gi|20092638|ref|NP_618713.1| - 1.6 8.1 7.3 3.5 7.0 1.4 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF2072 PF09845.4 gi|20092639|ref|NP_618714.1| - 0.01 15.7 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF4429 PF14472.1 gi|20092640|ref|NP_618715.1| - 8.2e-13 48.4 0.0 1.8e-12 47.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4429) SHOCT PF09851.4 gi|20092640|ref|NP_618715.1| - 1.2e-10 40.4 0.4 3.5e-10 39.0 0.2 1.8 1 0 0 1 1 1 1 Short C-terminal domain FemAB PF02388.11 gi|20092642|ref|NP_618717.1| - 2.1e-13 49.7 10.5 4e-06 25.7 0.6 3.1 2 1 1 3 3 3 3 FemAB family Acetyltransf_6 PF13480.1 gi|20092642|ref|NP_618717.1| - 2.2e-10 40.6 0.0 3.4e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DDE_Tnp_IS1 PF03400.8 gi|20092643|ref|NP_618718.1| - 2.8e-15 56.5 0.9 3.3e-15 56.3 0.6 1.0 1 0 0 1 1 1 1 IS1 transposase DDE_Tnp_IS240 PF13610.1 gi|20092643|ref|NP_618718.1| - 0.0047 16.8 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 DDE domain HTH_23 PF13384.1 gi|20092644|ref|NP_618719.1| - 3.3e-06 26.5 0.0 5.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20092644|ref|NP_618719.1| - 2.2e-05 24.3 0.0 3.3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20092644|ref|NP_618719.1| - 2.3e-05 23.8 0.0 3.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|20092644|ref|NP_618719.1| - 0.00069 19.7 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix DUF2387 PF09526.5 gi|20092644|ref|NP_618719.1| - 0.0054 16.6 1.2 0.0086 15.9 0.8 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) HTH_38 PF13936.1 gi|20092644|ref|NP_618719.1| - 0.0071 15.8 0.0 0.019 14.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092644|ref|NP_618719.1| - 0.009 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Zn_Tnp_IS1 PF03811.8 gi|20092644|ref|NP_618719.1| - 0.012 15.0 9.3 0.02 14.3 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain zf-Mss51 PF13824.1 gi|20092644|ref|NP_618719.1| - 0.014 15.1 3.2 0.014 15.1 2.2 1.7 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|20092644|ref|NP_618719.1| - 0.029 14.3 3.0 0.5 10.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|20092644|ref|NP_618719.1| - 0.036 13.8 7.4 0.058 13.2 5.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.15 gi|20092644|ref|NP_618719.1| - 0.044 13.7 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 Transposase DUF1670 PF07900.6 gi|20092644|ref|NP_618719.1| - 0.072 12.2 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) PolC_DP2 PF03833.8 gi|20092644|ref|NP_618719.1| - 0.083 10.5 0.2 0.072 10.7 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Rubredoxin PF00301.15 gi|20092644|ref|NP_618719.1| - 0.085 12.7 2.7 0.46 10.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20092644|ref|NP_618719.1| - 0.32 10.0 6.2 0.84 8.7 3.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2 PF00096.21 gi|20092644|ref|NP_618719.1| - 2.2 8.7 5.4 0.64 10.4 0.6 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.13 gi|20092644|ref|NP_618719.1| - 2.9 7.6 6.5 6.9 6.3 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Peptidase_M42 PF05343.9 gi|20092645|ref|NP_618720.1| - 3.3e-117 390.4 0.3 3.8e-117 390.2 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|20092645|ref|NP_618720.1| - 3.1e-11 43.1 0.0 5.1e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|20092645|ref|NP_618720.1| - 0.00021 21.0 0.0 0.0018 18.0 0.0 2.2 2 1 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|20092645|ref|NP_618720.1| - 0.076 11.5 0.0 0.14 10.6 0.0 1.4 1 1 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) Prefoldin_2 PF01920.15 gi|20092646|ref|NP_618721.1| - 5.5e-25 87.1 19.7 6.1e-25 87.0 13.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit IMS PF00817.15 gi|20092646|ref|NP_618721.1| - 0.012 15.4 1.1 0.016 15.0 0.7 1.1 1 0 0 1 1 1 0 impB/mucB/samB family Snf7 PF03357.16 gi|20092646|ref|NP_618721.1| - 0.03 13.7 14.6 0.21 10.9 3.6 2.2 2 0 0 2 2 2 0 Snf7 GAS PF13851.1 gi|20092646|ref|NP_618721.1| - 0.037 13.2 17.1 0.12 11.5 11.9 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4559 PF15112.1 gi|20092646|ref|NP_618721.1| - 0.073 12.2 8.2 0.08 12.0 5.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Init_tRNA_PT PF04179.7 gi|20092646|ref|NP_618721.1| - 0.23 10.2 8.0 0.24 10.2 5.6 1.0 1 0 0 1 1 1 0 Initiator tRNA phosphoribosyl transferase Phasin_2 PF09361.5 gi|20092646|ref|NP_618721.1| - 0.32 11.0 11.1 0.38 10.8 5.8 2.3 1 1 1 2 2 2 0 Phasin protein Radical_SAM_N PF08497.5 gi|20092646|ref|NP_618721.1| - 0.32 9.8 2.4 0.36 9.7 1.6 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal DUF3469 PF11952.3 gi|20092646|ref|NP_618721.1| - 0.34 10.6 3.5 0.89 9.2 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3469) DUF948 PF06103.6 gi|20092646|ref|NP_618721.1| - 0.37 10.6 11.2 0.52 10.2 0.7 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4239 PF14023.1 gi|20092646|ref|NP_618721.1| - 0.46 9.8 5.1 0.36 10.1 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) DUF1825 PF08855.5 gi|20092646|ref|NP_618721.1| - 0.76 9.7 10.1 1.2 9.1 7.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1825) DUF3713 PF12506.3 gi|20092646|ref|NP_618721.1| - 0.83 9.7 5.0 0.55 10.3 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3713) Viral_P18 PF04521.8 gi|20092646|ref|NP_618721.1| - 0.9 9.0 11.1 0.59 9.5 1.0 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein CENP-F_leu_zip PF10473.4 gi|20092646|ref|NP_618721.1| - 1 9.1 19.3 2.8 7.7 13.4 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 H-kinase_dim PF02895.9 gi|20092646|ref|NP_618721.1| - 2 8.8 11.3 1.7 9.0 1.8 2.4 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain DUF3552 PF12072.3 gi|20092646|ref|NP_618721.1| - 2.1 7.5 22.3 0.19 10.9 4.5 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF3552) Laminin_II PF06009.7 gi|20092646|ref|NP_618721.1| - 2.4 7.9 14.1 17 5.1 9.8 1.9 1 1 0 1 1 1 0 Laminin Domain II Spc24 PF08286.6 gi|20092646|ref|NP_618721.1| - 2.7 7.7 13.4 2.3 7.9 4.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Tweety PF04906.8 gi|20092646|ref|NP_618721.1| - 2.9 6.1 7.0 0.32 9.3 1.1 1.8 1 1 1 2 2 2 0 Tweety Syntaxin PF00804.20 gi|20092646|ref|NP_618721.1| - 4.4 7.5 15.3 2.4e+02 1.9 10.6 2.1 1 1 0 1 1 1 0 Syntaxin COG2 PF06148.6 gi|20092646|ref|NP_618721.1| - 4.6 7.1 10.8 4.7 7.1 3.1 2.2 1 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Prefoldin PF02996.12 gi|20092646|ref|NP_618721.1| - 5.3 6.7 17.5 9.3e+02 -0.6 12.1 2.6 1 1 0 1 1 1 0 Prefoldin subunit Syntaxin_2 PF14523.1 gi|20092646|ref|NP_618721.1| - 6 6.9 16.3 37 4.4 11.3 2.0 1 1 0 1 1 1 0 Syntaxin-like protein AATF-Che1 PF13339.1 gi|20092646|ref|NP_618721.1| - 6.3 6.9 11.6 13 5.9 8.1 1.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF3450 PF11932.3 gi|20092646|ref|NP_618721.1| - 7.7 5.6 20.9 2.3 7.4 2.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DHH PF01368.15 gi|20092647|ref|NP_618722.1| - 6.5e-13 48.5 0.4 2.6e-12 46.6 0.3 1.9 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|20092647|ref|NP_618722.1| - 2e-08 33.8 1.1 4.3e-08 32.7 0.5 1.8 2 0 0 2 2 2 1 DHHA1 domain DDE_Tnp_IS66 PF03050.9 gi|20092648|ref|NP_618723.1| - 1.1e-68 231.3 0.0 1.8e-68 230.7 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|20092648|ref|NP_618723.1| - 6.1e-09 35.7 8.6 6.1e-09 35.7 6.0 2.3 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|20092648|ref|NP_618723.1| - 0.0013 18.1 7.6 0.071 12.6 0.3 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|20092648|ref|NP_618723.1| - 0.0055 16.4 1.2 0.023 14.4 0.8 2.1 1 0 0 1 1 1 1 Double zinc ribbon DDE_Tnp_IS240 PF13610.1 gi|20092648|ref|NP_618723.1| - 0.01 15.7 0.8 0.11 12.4 0.3 2.3 2 0 0 2 2 2 0 DDE domain SlyX PF04102.7 gi|20092648|ref|NP_618723.1| - 0.016 15.5 0.2 0.016 15.5 0.1 2.8 3 1 0 3 3 3 0 SlyX zf-ribbon_3 PF13248.1 gi|20092648|ref|NP_618723.1| - 0.026 13.7 5.2 0.14 11.4 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DASH_Spc34 PF08657.5 gi|20092648|ref|NP_618723.1| - 0.04 13.5 0.3 0.04 13.5 0.2 2.0 2 1 0 2 2 2 0 DASH complex subunit Spc34 zf-FPG_IleRS PF06827.9 gi|20092648|ref|NP_618723.1| - 0.11 12.1 2.7 9 6.0 0.0 2.7 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2034 PF10356.4 gi|20092648|ref|NP_618723.1| - 0.12 11.5 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) RBD-FIP PF09457.5 gi|20092648|ref|NP_618723.1| - 0.73 9.6 4.4 19 5.1 0.3 2.9 2 0 0 2 2 2 0 FIP domain UPF0547 PF10571.4 gi|20092648|ref|NP_618723.1| - 1.1 8.9 12.5 1.3 8.8 2.0 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.1 gi|20092648|ref|NP_618723.1| - 4.9 7.0 7.7 22 4.9 1.8 3.0 2 0 0 2 2 2 0 YhfH-like protein AMP-binding_C_2 PF14535.1 gi|20092649|ref|NP_618724.1| - 3.1e-32 110.4 0.9 6.3e-32 109.4 0.1 2.0 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|20092649|ref|NP_618724.1| - 3.9e-24 84.8 0.0 9.1e-24 83.6 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|20092649|ref|NP_618724.1| - 1.8e-07 30.1 0.0 4.8e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE ACT PF01842.20 gi|20092650|ref|NP_618725.1| - 3e-19 68.0 0.3 3.2e-09 36.0 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|20092650|ref|NP_618725.1| - 2.3e-06 26.9 0.4 0.019 14.4 0.0 2.6 2 1 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|20092650|ref|NP_618725.1| - 5e-06 26.7 0.3 0.0047 17.2 0.0 2.2 2 0 0 2 2 2 2 ACT domain DUF2103 PF09876.4 gi|20092651|ref|NP_618726.1| - 1.5e-41 140.2 1.2 1.9e-41 140.0 0.8 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF1464 PF07318.7 gi|20092652|ref|NP_618727.1| - 3.4e-06 26.1 0.3 0.00019 20.4 0.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) NYN PF01936.13 gi|20092653|ref|NP_618728.1| - 8.9e-24 84.4 0.0 1.2e-23 84.0 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.8 gi|20092653|ref|NP_618728.1| - 0.016 14.7 0.0 0.95 8.9 0.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF460) Rhomboid PF01694.17 gi|20092655|ref|NP_618730.1| - 6e-32 110.6 14.7 6e-32 110.6 10.2 1.6 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|20092655|ref|NP_618730.1| - 2.6e-07 30.8 0.8 2.6e-07 30.8 0.5 2.3 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) DUF457 PF04307.9 gi|20092655|ref|NP_618730.1| - 9.9 5.4 10.1 27 4.0 7.1 2.0 1 1 1 2 2 2 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Prismane PF03063.15 gi|20092656|ref|NP_618731.1| - 1.4e-116 389.9 2.4 3.9e-97 325.7 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_21 PF14697.1 gi|20092656|ref|NP_618731.1| - 1.1e-06 28.4 7.2 1.1e-06 28.4 5.0 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092656|ref|NP_618731.1| - 1.1e-06 28.5 7.3 1.1e-06 28.5 5.1 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092656|ref|NP_618731.1| - 1.9e-06 28.0 9.2 1.9e-06 28.0 6.4 2.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092656|ref|NP_618731.1| - 5.3e-06 26.1 11.0 5.3e-06 26.1 7.6 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20092656|ref|NP_618731.1| - 1.6e-05 25.2 11.0 0.0033 17.7 0.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092656|ref|NP_618731.1| - 1.9e-05 24.9 9.4 1.9e-05 24.9 6.5 2.7 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092656|ref|NP_618731.1| - 5.8e-05 22.7 1.5 5.8e-05 22.7 1.0 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20092656|ref|NP_618731.1| - 0.00042 19.7 25.3 0.00058 19.3 2.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092656|ref|NP_618731.1| - 0.00048 19.8 21.9 0.0047 16.7 2.0 3.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20092656|ref|NP_618731.1| - 0.0011 19.3 0.2 0.0011 19.3 0.2 3.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20092656|ref|NP_618731.1| - 0.028 14.9 4.7 2.8 8.5 0.1 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|20092656|ref|NP_618731.1| - 0.065 13.5 26.7 0.28 11.6 2.9 4.0 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S2 PF00318.15 gi|20092656|ref|NP_618731.1| - 0.098 11.8 0.1 0.21 10.7 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein S2 DUF4287 PF14117.1 gi|20092656|ref|NP_618731.1| - 0.11 12.2 0.7 0.28 10.9 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Fer4_20 PF14691.1 gi|20092656|ref|NP_618731.1| - 0.35 10.4 7.2 5.4 6.6 5.1 2.4 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|20092656|ref|NP_618731.1| - 3.5 8.0 9.9 3.4 8.1 0.8 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|20092656|ref|NP_618731.1| - 6.8 7.5 16.9 0.45 11.2 0.1 3.1 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain CO_dh PF02552.11 gi|20092657|ref|NP_618732.1| - 3.9e-32 111.1 0.0 4.6e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|20092657|ref|NP_618732.1| - 8.7e-07 28.7 0.0 1.1e-06 28.5 0.0 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CBM_3 PF00942.13 gi|20092657|ref|NP_618732.1| - 0.026 14.5 0.1 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 Cellulose binding domain CdhC PF03598.10 gi|20092658|ref|NP_618733.1| - 1e-187 623.6 0.3 1.2e-187 623.4 0.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CbiA PF01656.18 gi|20092659|ref|NP_618734.1| - 4.8e-32 110.9 0.3 6.5e-32 110.5 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|20092659|ref|NP_618734.1| - 1e-08 34.7 1.7 2.3e-07 30.3 1.2 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|20092659|ref|NP_618734.1| - 5.5e-07 28.9 1.6 5.9e-06 25.5 1.0 2.2 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|20092659|ref|NP_618734.1| - 4.4e-05 23.4 0.3 0.13 12.2 0.0 2.5 2 1 1 3 3 2 2 AAA domain Toprim PF01751.17 gi|20092659|ref|NP_618734.1| - 9.4e-05 22.3 0.3 0.026 14.5 0.1 2.4 1 1 1 2 2 2 1 Toprim domain MobB PF03205.9 gi|20092659|ref|NP_618734.1| - 0.001 18.7 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.1 gi|20092659|ref|NP_618734.1| - 0.0012 18.4 1.8 0.38 10.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|20092659|ref|NP_618734.1| - 0.0018 17.9 1.0 0.0039 16.8 0.2 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|20092659|ref|NP_618734.1| - 0.0022 18.8 4.5 0.031 15.1 2.1 2.6 1 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|20092659|ref|NP_618734.1| - 0.0024 17.9 0.2 0.0062 16.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|20092659|ref|NP_618734.1| - 0.0034 17.1 2.7 0.79 9.4 0.1 2.3 2 0 0 2 2 2 2 NTPase APS_kinase PF01583.15 gi|20092659|ref|NP_618734.1| - 0.0058 16.3 0.5 0.013 15.1 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase YhjQ PF06564.7 gi|20092659|ref|NP_618734.1| - 0.0061 15.9 0.1 1.8 7.8 0.0 2.4 2 1 0 2 2 2 1 YhjQ protein MipZ PF09140.6 gi|20092659|ref|NP_618734.1| - 0.013 14.5 0.8 0.078 12.0 0.0 2.4 1 1 2 3 3 3 0 ATPase MipZ Toprim_4 PF13662.1 gi|20092659|ref|NP_618734.1| - 0.015 15.3 0.2 0.064 13.2 0.0 2.0 2 0 0 2 2 2 0 Toprim domain DUF87 PF01935.12 gi|20092659|ref|NP_618734.1| - 0.02 14.7 2.2 0.063 13.0 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|20092659|ref|NP_618734.1| - 0.021 14.4 0.2 0.045 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20092659|ref|NP_618734.1| - 0.022 15.0 0.7 0.055 13.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|20092659|ref|NP_618734.1| - 0.024 13.6 0.1 0.029 13.3 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PRK PF00485.13 gi|20092659|ref|NP_618734.1| - 0.028 13.9 0.1 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.22 gi|20092659|ref|NP_618734.1| - 0.044 14.0 0.1 0.11 12.7 0.0 1.8 1 1 0 2 2 2 0 ABC transporter AAA_22 PF13401.1 gi|20092659|ref|NP_618734.1| - 0.044 13.9 0.9 0.28 11.3 0.6 2.3 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|20092659|ref|NP_618734.1| - 0.044 12.7 0.0 0.049 12.6 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain SRP54 PF00448.17 gi|20092659|ref|NP_618734.1| - 0.058 12.8 3.6 0.076 12.4 0.7 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Helicase_RecD PF05127.9 gi|20092659|ref|NP_618734.1| - 0.061 12.9 0.1 0.092 12.3 0.0 1.5 1 1 0 1 1 1 0 Helicase ResIII PF04851.10 gi|20092659|ref|NP_618734.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2365 PF10157.4 gi|20092659|ref|NP_618734.1| - 0.089 12.6 0.3 0.13 12.0 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) AAA_24 PF13479.1 gi|20092659|ref|NP_618734.1| - 0.096 12.2 0.2 0.31 10.5 0.1 1.9 1 1 1 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|20092659|ref|NP_618734.1| - 0.12 11.7 0.6 1.6 8.0 0.0 2.6 2 1 1 3 3 3 0 Thymidylate kinase Sigma54_activat PF00158.21 gi|20092659|ref|NP_618734.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|20092659|ref|NP_618734.1| - 0.15 11.4 2.7 0.54 9.6 0.2 2.5 3 0 0 3 3 3 0 AAA domain ArgK PF03308.11 gi|20092659|ref|NP_618734.1| - 0.16 10.7 1.3 0.74 8.5 0.1 2.0 2 0 0 2 2 2 0 ArgK protein CdhD PF03599.11 gi|20092660|ref|NP_618735.1| - 3.3e-93 312.2 2.3 6.9e-86 288.1 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.11 gi|20092661|ref|NP_618736.1| - 2.6e-158 526.5 0.1 3e-158 526.3 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|20092661|ref|NP_618736.1| - 5e-17 61.1 1.5 5e-17 61.1 1.1 1.9 2 0 0 2 2 2 1 Putative Fe-S cluster MOFRL PF05161.8 gi|20092661|ref|NP_618736.1| - 0.016 15.3 0.1 0.038 14.1 0.1 1.6 1 0 0 1 1 1 0 MOFRL family Peripla_BP_4 PF13407.1 gi|20092661|ref|NP_618736.1| - 2.4 7.4 5.9 8.3 5.6 0.0 2.5 2 1 1 3 3 3 0 Periplasmic binding protein domain DUF1670 PF07900.6 gi|20092662|ref|NP_618737.1| - 1.3e-97 325.3 5.1 1.5e-97 325.1 3.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.1 gi|20092662|ref|NP_618737.1| - 8.4e-07 28.4 0.1 0.66 9.7 0.0 4.1 2 2 2 4 4 4 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|20092662|ref|NP_618737.1| - 7.6e-05 22.0 0.6 2.3 7.7 0.0 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20092662|ref|NP_618737.1| - 0.00022 20.9 0.2 0.39 10.5 0.0 2.8 1 1 2 3 3 3 2 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|20092662|ref|NP_618737.1| - 0.00049 20.2 0.1 1.8 8.8 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|20092662|ref|NP_618737.1| - 0.00054 19.2 0.0 0.56 9.6 0.0 3.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20092662|ref|NP_618737.1| - 0.00061 19.4 0.3 0.064 12.9 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Terminase_5 PF06056.7 gi|20092662|ref|NP_618737.1| - 0.0012 18.3 0.2 0.012 15.1 0.2 2.4 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|20092662|ref|NP_618737.1| - 0.003 17.6 0.1 14 5.9 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|20092662|ref|NP_618737.1| - 0.017 15.0 1.2 5.6 6.9 0.2 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|20092662|ref|NP_618737.1| - 0.02 14.4 1.6 1.4 8.5 0.1 3.2 3 1 1 4 4 4 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|20092662|ref|NP_618737.1| - 0.022 14.3 0.2 11 5.7 0.0 3.0 3 0 0 3 3 3 0 HTH domain HTH_10 PF04967.7 gi|20092662|ref|NP_618737.1| - 0.051 13.1 0.1 0.66 9.6 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Phage_terminase PF10668.4 gi|20092662|ref|NP_618737.1| - 0.055 13.2 0.2 2.4 8.0 0.1 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_6 PF01418.12 gi|20092662|ref|NP_618737.1| - 0.091 12.5 0.2 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family DUF1670 PF07900.6 gi|20092663|ref|NP_618738.1| - 6.7e-89 296.8 0.3 8.3e-89 296.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_24 PF13412.1 gi|20092663|ref|NP_618738.1| - 0.0003 20.1 0.2 0.0021 17.4 0.2 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20092663|ref|NP_618738.1| - 0.0012 18.8 0.0 0.037 14.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|20092663|ref|NP_618738.1| - 0.0019 17.8 0.0 9.3 6.0 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_29 PF13551.1 gi|20092663|ref|NP_618738.1| - 0.0019 18.2 0.1 0.35 11.0 0.0 3.0 1 1 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|20092663|ref|NP_618738.1| - 0.0022 17.5 0.8 0.0089 15.6 0.1 2.3 2 1 1 3 3 3 1 HTH domain HTH_17 PF12728.2 gi|20092663|ref|NP_618738.1| - 0.013 15.7 0.1 0.28 11.4 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20092663|ref|NP_618738.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|20092663|ref|NP_618738.1| - 0.017 14.7 0.1 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|20092663|ref|NP_618738.1| - 0.036 13.5 1.5 8.4 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|20092663|ref|NP_618738.1| - 0.036 14.0 0.4 1.4 9.0 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20092663|ref|NP_618738.1| - 0.055 13.0 1.3 4.1 7.0 0.0 3.5 4 0 0 4 4 4 0 Putative ATPase subunit of terminase (gpP-like) MarR PF01047.17 gi|20092663|ref|NP_618738.1| - 0.062 13.0 0.1 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|20092663|ref|NP_618738.1| - 0.068 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TENA_THI-4 PF03070.11 gi|20092663|ref|NP_618738.1| - 0.11 12.2 0.9 3.4 7.3 0.1 2.8 2 1 0 3 3 3 0 TENA/THI-4/PQQC family HTH_38 PF13936.1 gi|20092663|ref|NP_618738.1| - 0.16 11.5 2.3 0.18 11.3 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Glycos_transf_2 PF00535.21 gi|20092664|ref|NP_618739.1| - 5.1e-23 81.5 0.0 6.7e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20092664|ref|NP_618739.1| - 1.2e-09 38.3 0.0 1.7e-09 37.8 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|20092664|ref|NP_618739.1| - 5.8e-09 35.4 0.0 7.9e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20092664|ref|NP_618739.1| - 0.00011 22.4 0.0 0.00019 21.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2493 PF10686.4 gi|20092664|ref|NP_618739.1| - 0.11 12.1 0.1 0.34 10.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2493) NMD3 PF04981.8 gi|20092665|ref|NP_618740.1| - 2e-67 226.7 0.8 2.8e-67 226.2 0.6 1.2 1 0 0 1 1 1 1 NMD3 family Peptidase_C39 PF03412.10 gi|20092665|ref|NP_618740.1| - 0.05 13.4 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase C39 family Prok-RING_1 PF14446.1 gi|20092665|ref|NP_618740.1| - 0.093 12.4 0.2 0.093 12.4 0.1 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|20092665|ref|NP_618740.1| - 0.25 10.5 7.8 7.3 5.9 3.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|20092665|ref|NP_618740.1| - 0.38 10.1 5.1 3 7.2 0.0 2.7 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.1 gi|20092665|ref|NP_618740.1| - 0.47 9.9 6.9 6.5 6.3 2.6 2.8 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20092665|ref|NP_618740.1| - 1.5 8.5 4.3 15 5.3 1.5 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-CCHC PF00098.18 gi|20092665|ref|NP_618740.1| - 1.7 8.6 5.7 9.8 6.3 0.4 2.6 2 0 0 2 2 2 0 Zinc knuckle Zn-ribbon_8 PF09723.5 gi|20092665|ref|NP_618740.1| - 7.4 6.6 7.8 1.5 8.8 0.3 3.3 5 0 0 5 5 5 0 Zinc ribbon domain ATP-grasp_3 PF02655.9 gi|20092666|ref|NP_618741.1| - 9.9e-53 178.2 0.0 1.4e-52 177.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|20092666|ref|NP_618741.1| - 3.5e-19 69.2 0.0 5.4e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|20092666|ref|NP_618741.1| - 6.3e-16 58.0 0.0 1.1e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|20092666|ref|NP_618741.1| - 2.9e-11 43.0 0.0 4.2e-10 39.2 0.0 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|20092666|ref|NP_618741.1| - 4.3e-06 26.3 0.0 2e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|20092666|ref|NP_618741.1| - 1.4e-05 24.6 0.0 0.00018 20.9 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|20092666|ref|NP_618741.1| - 0.0099 15.0 0.0 0.036 13.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp GARS_A PF01071.14 gi|20092666|ref|NP_618741.1| - 0.013 15.0 0.0 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|20092666|ref|NP_618741.1| - 0.024 13.9 0.0 0.22 10.8 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp domain TFIIE_alpha PF02002.12 gi|20092667|ref|NP_618742.1| - 1.9e-19 69.1 0.6 2.9e-19 68.4 0.4 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit RepL PF05732.6 gi|20092667|ref|NP_618742.1| - 0.022 13.9 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TF_Zn_Ribbon PF08271.7 gi|20092667|ref|NP_618742.1| - 0.034 13.4 4.3 0.068 12.5 1.8 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|20092667|ref|NP_618742.1| - 0.058 13.5 2.2 0.7 10.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HD PF01966.17 gi|20092668|ref|NP_618743.1| - 1.7e-15 57.1 0.6 2.6e-15 56.4 0.4 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|20092668|ref|NP_618743.1| - 0.0092 15.2 0.1 0.018 14.2 0.1 1.5 1 1 0 1 1 1 1 HDOD domain Proteasome PF00227.21 gi|20092669|ref|NP_618744.1| - 1.3e-54 184.4 2.0 1.4e-54 184.2 1.4 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4191 PF13829.1 gi|20092669|ref|NP_618744.1| - 0.035 13.2 0.1 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Beta-Casp PF10996.3 gi|20092670|ref|NP_618745.1| - 3e-35 120.9 0.0 7.3e-35 119.6 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|20092670|ref|NP_618745.1| - 9.9e-25 87.3 0.3 1.8e-24 86.4 0.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|20092670|ref|NP_618745.1| - 1.1e-11 44.3 0.0 2.6e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|20092670|ref|NP_618745.1| - 8.8e-11 41.7 0.1 2.4e-10 40.2 0.1 1.8 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|20092670|ref|NP_618745.1| - 4.1e-06 26.2 2.6 2.5e-05 23.7 0.6 3.0 2 1 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|20092670|ref|NP_618745.1| - 1.3e-05 24.9 0.0 3.7e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|20092670|ref|NP_618745.1| - 0.0003 20.3 2.8 0.0029 17.2 0.5 2.5 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|20092670|ref|NP_618745.1| - 0.0033 17.0 0.0 0.0078 15.8 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|20092670|ref|NP_618745.1| - 0.024 14.2 1.8 0.13 11.9 0.3 2.6 2 0 0 2 2 2 0 KH domain HAD_2 PF13419.1 gi|20092671|ref|NP_618746.1| - 1.5e-20 74.1 0.0 1.8e-20 73.9 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|20092671|ref|NP_618746.1| - 1.9e-07 31.7 0.0 2.5e-07 31.3 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20092671|ref|NP_618746.1| - 0.00015 21.3 0.0 0.00031 20.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|20092671|ref|NP_618746.1| - 0.029 14.5 0.0 0.058 13.5 0.0 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase FtsZ_C PF12327.3 gi|20092672|ref|NP_618747.1| - 1.2e-33 115.0 1.8 1.9e-33 114.3 0.1 2.3 3 1 0 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|20092672|ref|NP_618747.1| - 3.7e-33 115.1 0.7 1.5e-32 113.2 0.5 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|20092672|ref|NP_618747.1| - 0.013 15.3 0.0 0.057 13.2 0.0 2.0 2 0 0 2 2 2 0 ThiF family Pterin_bind PF00809.17 gi|20092673|ref|NP_618748.1| - 7e-14 51.6 0.1 2.1e-12 46.8 0.1 2.4 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|20092673|ref|NP_618748.1| - 1.7e-09 37.4 0.0 4.5e-09 36.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|20092673|ref|NP_618748.1| - 0.00083 17.9 0.0 0.0022 16.5 0.0 1.6 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Sipho_Gp37 PF14594.1 gi|20092674|ref|NP_618749.1| - 0.12 11.5 1.5 0.24 10.5 0.2 1.8 2 0 0 2 2 2 0 Siphovirus ReqiPepy6 Gp37-like protein H_PPase PF03030.11 gi|20092675|ref|NP_618750.1| - 3.6e-272 904.6 54.7 4.2e-272 904.4 37.9 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase H_PPase PF03030.11 gi|20092676|ref|NP_618751.1| - 6.4e-275 913.7 53.4 7.3e-275 913.5 37.0 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase MFS_1 PF07690.11 gi|20092677|ref|NP_618752.1| - 3.6e-34 118.0 47.1 1.6e-26 92.8 11.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|20092677|ref|NP_618752.1| - 1.4e-06 27.2 11.2 1.4e-06 27.2 7.8 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|20092677|ref|NP_618752.1| - 0.00016 19.9 0.5 0.00027 19.2 0.3 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.11 gi|20092678|ref|NP_618753.1| - 2.7e-36 125.0 37.9 1.5e-26 92.9 6.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PUA PF01472.15 gi|20092679|ref|NP_618754.1| - 1.8e-21 75.6 1.4 3.3e-21 74.7 1.0 1.4 1 0 0 1 1 1 1 PUA domain KH_2 PF07650.12 gi|20092679|ref|NP_618754.1| - 0.059 12.9 4.0 0.31 10.6 0.2 2.8 3 1 0 3 3 3 0 KH domain DUF4319 PF14203.1 gi|20092679|ref|NP_618754.1| - 0.45 10.0 3.0 0.99 8.9 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4319) DUF552 PF04472.7 gi|20092680|ref|NP_618755.1| - 1e-17 63.8 2.1 1.6e-17 63.1 1.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Beta-lactamase2 PF13354.1 gi|20092680|ref|NP_618755.1| - 0.031 13.7 0.0 0.036 13.5 0.0 1.0 1 0 0 1 1 1 0 Beta-lactamase enzyme family zf-ZPR1 PF03367.8 gi|20092681|ref|NP_618756.1| - 1.8e-44 150.7 0.3 2.3e-44 150.4 0.2 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain YdjO PF14169.1 gi|20092681|ref|NP_618756.1| - 0.03 13.7 0.3 0.31 10.5 0.1 2.3 2 0 0 2 2 2 0 Cold-inducible protein YdjO Nse4-Nse3_bdg PF15412.1 gi|20092681|ref|NP_618756.1| - 0.11 12.3 0.1 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE tRNA-synt_2b PF00587.20 gi|20092682|ref|NP_618757.1| - 1.6e-20 73.4 0.1 3.5e-20 72.2 0.1 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|20092682|ref|NP_618757.1| - 2.9e-20 71.9 0.1 5.7e-20 71.0 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|20092682|ref|NP_618757.1| - 1.3e-16 60.2 0.3 1.3e-16 60.2 0.2 1.8 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal UPF0150 PF03681.10 gi|20092682|ref|NP_618757.1| - 0.036 13.6 0.5 0.084 12.5 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) DBI_PRT PF02277.12 gi|20092683|ref|NP_618758.1| - 4.7e-22 78.4 0.3 6.4e-22 78.0 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase zinc-ribbons_6 PF07191.7 gi|20092684|ref|NP_618759.1| - 0.0066 16.2 1.7 0.009 15.7 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbons C1_1 PF00130.17 gi|20092684|ref|NP_618759.1| - 0.022 14.4 2.2 0.035 13.8 1.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|20092684|ref|NP_618759.1| - 0.046 13.5 1.2 0.082 12.7 0.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|20092684|ref|NP_618759.1| - 0.49 10.3 4.7 0.76 9.7 3.2 1.5 1 1 0 1 1 1 0 FYVE zinc finger zf-B_box PF00643.19 gi|20092684|ref|NP_618759.1| - 0.54 10.1 3.6 1.5 8.7 1.8 2.0 1 1 1 2 2 2 0 B-box zinc finger Zn-ribbon_8 PF09723.5 gi|20092684|ref|NP_618759.1| - 1.9 8.4 4.7 21 5.1 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain RRN7 PF11781.3 gi|20092684|ref|NP_618759.1| - 3.9 7.0 7.0 0.4 10.2 0.9 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DeoC PF01791.4 gi|20092685|ref|NP_618760.1| - 1.1e-49 168.8 0.1 1.3e-49 168.6 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PK PF00224.16 gi|20092686|ref|NP_618761.1| - 2.4e-125 417.7 1.4 3.3e-125 417.3 1.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|20092686|ref|NP_618761.1| - 2e-25 88.6 0.0 1.1e-24 86.2 0.0 2.3 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|20092686|ref|NP_618761.1| - 2e-05 23.5 1.1 4.1e-05 22.5 0.8 1.5 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family TPR_1 PF00515.23 gi|20092688|ref|NP_618763.1| - 3.6e-13 48.5 0.7 3.3e-11 42.2 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092688|ref|NP_618763.1| - 6.3e-11 41.2 0.3 2.6e-08 33.0 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092688|ref|NP_618763.1| - 2.4e-10 39.8 1.3 2.2e-09 36.8 0.6 2.1 1 1 1 2 2 2 1 TPR repeat TPR_2 PF07719.12 gi|20092688|ref|NP_618763.1| - 6.7e-10 38.1 0.0 8.3e-09 34.7 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092688|ref|NP_618763.1| - 1e-05 25.7 0.0 2.3e-05 24.6 0.0 1.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092688|ref|NP_618763.1| - 1.2e-05 25.1 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092688|ref|NP_618763.1| - 1.3e-05 25.4 0.0 0.019 15.2 0.0 1.9 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092688|ref|NP_618763.1| - 4.2e-05 23.0 0.0 0.00025 20.5 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092688|ref|NP_618763.1| - 0.00016 21.5 0.9 0.026 14.7 0.0 2.9 3 1 1 4 4 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|20092688|ref|NP_618763.1| - 0.00031 20.5 0.8 0.00047 19.9 0.5 1.3 1 0 0 1 1 1 1 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.1 gi|20092688|ref|NP_618763.1| - 0.0015 18.3 0.0 0.0018 18.0 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat PPR PF01535.15 gi|20092688|ref|NP_618763.1| - 0.013 15.3 0.3 0.037 13.9 0.2 1.7 1 0 0 1 1 1 0 PPR repeat TPR_10 PF13374.1 gi|20092688|ref|NP_618763.1| - 0.016 15.0 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20092688|ref|NP_618763.1| - 0.023 15.3 0.0 0.035 14.7 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092688|ref|NP_618763.1| - 0.028 14.8 0.0 0.24 11.9 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat MIT PF04212.13 gi|20092688|ref|NP_618763.1| - 0.077 12.8 2.1 0.2 11.5 1.4 1.7 1 1 0 1 1 1 0 MIT (microtubule interacting and transport) domain RPN7 PF10602.4 gi|20092688|ref|NP_618763.1| - 0.079 12.3 0.1 0.09 12.1 0.0 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 ChAPs PF09295.5 gi|20092688|ref|NP_618763.1| - 0.13 10.9 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_1 PF00515.23 gi|20092689|ref|NP_618764.1| - 4.2e-13 48.2 0.7 1.3e-09 37.2 0.1 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20092689|ref|NP_618764.1| - 2.7e-11 42.9 0.3 2.3e-09 36.7 0.2 2.2 1 1 1 2 2 2 2 TPR repeat TPR_16 PF13432.1 gi|20092689|ref|NP_618764.1| - 2.2e-10 40.8 1.7 2e-05 25.1 0.1 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20092689|ref|NP_618764.1| - 8.7e-10 37.7 1.2 2.1e-07 30.3 0.1 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20092689|ref|NP_618764.1| - 8.8e-09 34.5 0.3 7.8e-06 25.3 0.0 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20092689|ref|NP_618764.1| - 1.2e-05 25.5 3.4 0.0056 16.9 0.3 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20092689|ref|NP_618764.1| - 1.2e-05 25.4 0.1 0.0039 17.6 0.1 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20092689|ref|NP_618764.1| - 1.4e-05 24.8 0.0 1.9e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20092689|ref|NP_618764.1| - 3.9e-05 23.5 0.5 0.045 13.9 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20092689|ref|NP_618764.1| - 6.3e-05 22.8 0.0 0.00016 21.4 0.0 1.7 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20092689|ref|NP_618764.1| - 0.012 15.9 0.0 1.3 9.6 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20092689|ref|NP_618764.1| - 0.083 12.7 0.2 16 5.6 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat DAO PF01266.19 gi|20092690|ref|NP_618765.1| - 1.7e-13 50.2 0.8 5.3e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|20092690|ref|NP_618765.1| - 1.1e-11 44.4 1.5 4e-05 22.8 0.0 2.8 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|20092690|ref|NP_618765.1| - 6.7e-10 38.6 0.2 1.3e-09 37.6 0.2 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20092690|ref|NP_618765.1| - 1.4e-08 33.6 0.5 3.6e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|20092690|ref|NP_618765.1| - 4.2e-08 32.5 0.1 4e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|20092690|ref|NP_618765.1| - 4.4e-08 32.3 0.3 8.7e-08 31.4 0.2 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|20092690|ref|NP_618765.1| - 4.5e-07 29.8 0.1 3.1e-06 27.1 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|20092690|ref|NP_618765.1| - 3.6e-06 26.0 0.3 7.2e-06 25.1 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|20092690|ref|NP_618765.1| - 4.2e-06 26.0 0.1 1.1e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|20092690|ref|NP_618765.1| - 4.8e-06 26.5 0.0 2.7e-05 24.1 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|20092690|ref|NP_618765.1| - 0.00015 20.5 0.1 0.22 10.1 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|20092690|ref|NP_618765.1| - 0.009 16.3 0.4 4.7 7.6 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|20092690|ref|NP_618765.1| - 0.0091 15.6 0.0 0.085 12.5 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|20092690|ref|NP_618765.1| - 0.017 15.2 0.0 0.038 14.0 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|20092690|ref|NP_618765.1| - 0.018 14.7 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|20092690|ref|NP_618765.1| - 0.027 14.2 0.3 0.26 11.0 0.2 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding Fer4_NifH PF00142.13 gi|20092691|ref|NP_618766.1| - 9.7e-128 425.0 0.8 1.1e-127 424.9 0.5 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|20092691|ref|NP_618766.1| - 1e-08 34.8 0.2 1.7e-08 34.1 0.1 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|20092691|ref|NP_618766.1| - 6e-06 25.5 0.1 1e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|20092691|ref|NP_618766.1| - 2.4e-05 24.3 0.0 4.7e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20092691|ref|NP_618766.1| - 0.0018 17.7 0.1 0.0026 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|20092691|ref|NP_618766.1| - 0.0049 15.6 0.1 0.007 15.1 0.1 1.3 1 0 0 1 1 1 1 ArgK protein RNA_helicase PF00910.17 gi|20092691|ref|NP_618766.1| - 0.0082 16.3 0.3 0.044 13.9 0.0 2.1 2 0 0 2 2 2 1 RNA helicase YhjQ PF06564.7 gi|20092691|ref|NP_618766.1| - 0.0082 15.5 0.1 0.074 12.3 0.0 2.0 2 0 0 2 2 2 1 YhjQ protein SRP54 PF00448.17 gi|20092691|ref|NP_618766.1| - 0.0095 15.4 0.2 0.018 14.5 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|20092691|ref|NP_618766.1| - 0.03 13.7 0.0 0.064 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|20092691|ref|NP_618766.1| - 0.03 13.8 0.2 0.17 11.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|20092691|ref|NP_618766.1| - 0.036 13.1 0.7 0.11 11.5 0.1 1.8 2 0 0 2 2 2 0 ATPase MipZ AAA_22 PF13401.1 gi|20092691|ref|NP_618766.1| - 0.057 13.5 0.1 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20092691|ref|NP_618766.1| - 0.065 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.12 gi|20092691|ref|NP_618766.1| - 0.067 12.9 0.3 0.13 12.0 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATP_bind_1 PF03029.12 gi|20092691|ref|NP_618766.1| - 0.079 12.4 0.1 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.17 gi|20092691|ref|NP_618766.1| - 0.093 11.5 0.3 0.17 10.7 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|20092691|ref|NP_618766.1| - 0.12 11.8 0.2 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|20092691|ref|NP_618766.1| - 0.12 12.6 0.5 0.25 11.6 0.1 1.6 2 0 0 2 2 2 0 ABC transporter AAA_18 PF13238.1 gi|20092691|ref|NP_618766.1| - 0.24 11.6 1.0 0.9 9.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|20092691|ref|NP_618766.1| - 0.33 11.7 2.5 2.1 9.1 1.6 2.4 1 1 1 2 2 2 0 AAA domain P-II PF00543.17 gi|20092692|ref|NP_618767.1| - 4.7e-32 110.4 1.1 5.3e-32 110.3 0.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.17 gi|20092693|ref|NP_618768.1| - 2.3e-34 117.9 0.2 3.1e-34 117.5 0.1 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.14 gi|20092694|ref|NP_618769.1| - 4.7e-143 476.6 0.1 5.8e-143 476.3 0.1 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase HGD-D PF06050.8 gi|20092694|ref|NP_618769.1| - 0.063 12.0 0.1 0.24 10.1 0.0 1.8 1 1 1 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component Cob_adeno_trans PF01923.13 gi|20092694|ref|NP_618769.1| - 0.17 11.6 0.1 0.6 9.8 0.0 1.8 2 0 0 2 2 2 0 Cobalamin adenosyltransferase Oxidored_nitro PF00148.14 gi|20092695|ref|NP_618770.1| - 1.8e-123 412.1 0.0 2e-123 411.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|20092696|ref|NP_618771.1| - 3.1e-125 417.9 0.1 3.7e-125 417.6 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|20092697|ref|NP_618772.1| - 7.4e-139 462.7 0.0 1e-138 462.3 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase BPD_transp_1 PF00528.17 gi|20092698|ref|NP_618773.1| - 2e-20 73.1 14.3 2e-20 73.1 9.9 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3923 PF13061.1 gi|20092698|ref|NP_618773.1| - 3.3 7.6 7.6 1.1 9.1 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3923) ABC_tran PF00005.22 gi|20092699|ref|NP_618774.1| - 4.9e-30 104.6 0.0 1.3e-29 103.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|20092699|ref|NP_618774.1| - 2e-10 41.0 0.0 7.3e-08 32.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|20092699|ref|NP_618774.1| - 8.6e-08 32.0 0.0 1.9e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_22 PF13401.1 gi|20092699|ref|NP_618774.1| - 1.9e-05 24.8 0.0 0.0018 18.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|20092699|ref|NP_618774.1| - 5.6e-05 22.3 0.0 0.088 11.8 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|20092699|ref|NP_618774.1| - 0.00072 18.8 0.1 0.018 14.3 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain PEPCK_ATP PF01293.15 gi|20092699|ref|NP_618774.1| - 0.0097 14.4 0.1 0.016 13.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_18 PF13238.1 gi|20092699|ref|NP_618774.1| - 0.013 15.8 0.1 0.33 11.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|20092699|ref|NP_618774.1| - 0.028 14.5 0.1 0.18 11.9 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|20092699|ref|NP_618774.1| - 0.046 13.2 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|20092699|ref|NP_618774.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|20092699|ref|NP_618774.1| - 0.064 13.2 0.1 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|20092699|ref|NP_618774.1| - 0.072 13.0 0.3 0.6 10.0 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|20092699|ref|NP_618774.1| - 0.09 12.6 0.0 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|20092699|ref|NP_618774.1| - 0.12 13.2 0.9 0.23 12.3 0.3 2.0 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|20092699|ref|NP_618774.1| - 0.12 12.6 0.5 0.23 11.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20092699|ref|NP_618774.1| - 0.13 12.1 0.0 0.25 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Methyltransf_11 PF08241.7 gi|20092700|ref|NP_618775.1| - 1.2e-25 89.7 0.0 1.9e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092700|ref|NP_618775.1| - 2.3e-24 85.7 0.0 3e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092700|ref|NP_618775.1| - 1.4e-18 67.1 0.0 2.6e-18 66.2 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092700|ref|NP_618775.1| - 3e-16 60.0 0.0 4.8e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092700|ref|NP_618775.1| - 5.7e-15 55.5 0.0 8.7e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092700|ref|NP_618775.1| - 1.1e-14 54.6 0.0 1.7e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092700|ref|NP_618775.1| - 4.9e-14 51.9 0.0 6.6e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20092700|ref|NP_618775.1| - 4.4e-12 46.0 0.0 1.1e-11 44.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092700|ref|NP_618775.1| - 3.4e-09 36.2 0.0 6.4e-09 35.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20092700|ref|NP_618775.1| - 3.8e-09 36.3 0.0 5.3e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|20092700|ref|NP_618775.1| - 1.7e-07 30.7 0.0 2.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.6 gi|20092700|ref|NP_618775.1| - 2e-07 30.6 0.0 2.7e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20092700|ref|NP_618775.1| - 3.6e-06 26.2 0.0 5.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|20092700|ref|NP_618775.1| - 3.6e-06 26.7 0.0 5.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20092700|ref|NP_618775.1| - 0.00015 20.9 0.0 0.00018 20.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|20092700|ref|NP_618775.1| - 0.00021 20.4 0.0 0.00025 20.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|20092700|ref|NP_618775.1| - 0.00047 19.7 0.0 0.0007 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|20092700|ref|NP_618775.1| - 0.0018 17.4 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.10 gi|20092700|ref|NP_618775.1| - 0.0019 17.3 0.0 0.0033 16.5 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TPMT PF05724.6 gi|20092700|ref|NP_618775.1| - 0.0089 15.4 0.0 0.019 14.3 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DREV PF05219.7 gi|20092700|ref|NP_618775.1| - 0.011 14.5 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase GCD14 PF08704.5 gi|20092700|ref|NP_618775.1| - 0.023 14.2 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N6_N4_Mtase PF01555.13 gi|20092700|ref|NP_618775.1| - 0.029 13.8 0.0 0.16 11.4 0.0 2.0 2 1 0 2 2 2 0 DNA methylase Methyltransf_4 PF02390.12 gi|20092700|ref|NP_618775.1| - 0.035 13.1 0.0 0.059 12.4 0.0 1.4 1 1 1 2 2 2 0 Putative methyltransferase AdoMet_MTase PF07757.8 gi|20092700|ref|NP_618775.1| - 0.099 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DUF938 PF06080.7 gi|20092700|ref|NP_618775.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_16 PF10294.4 gi|20092700|ref|NP_618775.1| - 0.14 11.5 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase SBP_bac_5 PF00496.17 gi|20092701|ref|NP_618776.1| - 8.6e-75 251.8 0.0 1.1e-74 251.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|20092702|ref|NP_618777.1| - 1.3e-43 148.7 10.4 1.3e-43 148.7 7.2 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|20092703|ref|NP_618778.1| - 3.3e-28 98.4 11.5 3.3e-28 98.4 7.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20092703|ref|NP_618778.1| - 0.12 11.7 3.1 0.13 11.6 0.1 2.5 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.3 gi|20092703|ref|NP_618778.1| - 4.6 6.3 7.2 7.3 5.7 3.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) ABC_tran PF00005.22 gi|20092704|ref|NP_618779.1| - 1.6e-23 83.5 0.0 2.1e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20092704|ref|NP_618779.1| - 6.1e-21 74.5 0.3 1.5e-20 73.3 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20092704|ref|NP_618779.1| - 5.1e-06 26.6 0.1 0.004 17.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|20092704|ref|NP_618779.1| - 0.00018 21.0 0.0 0.00033 20.1 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|20092704|ref|NP_618779.1| - 0.00037 20.5 0.1 0.0026 17.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|20092704|ref|NP_618779.1| - 0.001 19.1 0.0 0.0023 18.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|20092704|ref|NP_618779.1| - 0.0056 15.8 0.0 0.03 13.4 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|20092704|ref|NP_618779.1| - 0.0085 15.2 0.1 0.019 14.1 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|20092704|ref|NP_618779.1| - 0.0087 15.5 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|20092704|ref|NP_618779.1| - 0.0094 15.6 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.17 gi|20092704|ref|NP_618779.1| - 0.013 14.3 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|20092704|ref|NP_618779.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|20092704|ref|NP_618779.1| - 0.026 14.3 0.0 0.058 13.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATP-synt_ab PF00006.20 gi|20092704|ref|NP_618779.1| - 0.027 13.9 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|20092704|ref|NP_618779.1| - 0.048 13.0 0.1 0.1 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|20092704|ref|NP_618779.1| - 0.06 12.7 0.1 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|20092704|ref|NP_618779.1| - 0.06 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain SMC_N PF02463.14 gi|20092704|ref|NP_618779.1| - 0.098 11.8 0.0 0.31 10.2 0.0 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.17 gi|20092704|ref|NP_618779.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|20092705|ref|NP_618780.1| - 1.2e-28 100.1 0.0 1.7e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20092705|ref|NP_618780.1| - 3e-15 56.3 1.7 6.1e-15 55.3 1.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20092705|ref|NP_618780.1| - 8.8e-12 45.5 0.5 3.7e-08 33.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|20092705|ref|NP_618780.1| - 8.2e-05 22.7 0.8 0.00054 20.1 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20092705|ref|NP_618780.1| - 0.00098 18.6 0.0 0.0018 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|20092705|ref|NP_618780.1| - 0.0022 17.6 0.0 0.004 16.8 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|20092705|ref|NP_618780.1| - 0.0028 17.9 0.5 0.012 15.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20092705|ref|NP_618780.1| - 0.0045 16.9 0.1 0.0093 15.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|20092705|ref|NP_618780.1| - 0.0047 17.1 0.0 0.13 12.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|20092705|ref|NP_618780.1| - 0.0058 17.4 0.1 0.015 16.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20092705|ref|NP_618780.1| - 0.012 14.8 0.0 0.023 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CbiA PF01656.18 gi|20092705|ref|NP_618780.1| - 0.016 14.6 1.6 0.13 11.6 0.1 2.2 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.7 gi|20092705|ref|NP_618780.1| - 0.072 12.7 0.2 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|20092705|ref|NP_618780.1| - 0.094 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20092705|ref|NP_618780.1| - 0.098 12.9 1.2 0.13 12.5 0.0 1.7 2 1 0 2 2 2 0 AAA domain PRK PF00485.13 gi|20092705|ref|NP_618780.1| - 0.1 12.1 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.16 gi|20092705|ref|NP_618780.1| - 0.12 11.4 0.0 0.27 10.3 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|20092705|ref|NP_618780.1| - 0.12 11.1 0.1 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Gate PF07670.9 gi|20092706|ref|NP_618781.1| - 1.4e-13 50.7 16.0 1.2e-06 28.3 2.8 2.6 2 1 0 2 2 2 2 Nucleoside recognition DDDD PF10161.4 gi|20092706|ref|NP_618781.1| - 0.034 13.7 0.9 0.82 9.3 0.0 2.9 3 0 0 3 3 3 0 Putative mitochondrial precursor protein Plus-3 PF03126.13 gi|20092709|ref|NP_618784.1| - 0.042 13.9 0.0 0.059 13.4 0.0 1.3 1 0 0 1 1 1 0 Plus-3 domain SBP_bac_3 PF00497.15 gi|20092710|ref|NP_618785.1| - 5.6e-47 159.8 0.4 7e-23 81.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Cache_2 PF08269.6 gi|20092710|ref|NP_618785.1| - 6.4e-32 109.4 0.5 8.7e-14 51.2 0.0 3.7 3 0 0 3 3 3 3 Cache domain NMT1 PF09084.6 gi|20092710|ref|NP_618785.1| - 5.7e-06 26.0 0.0 0.063 12.8 0.0 3.0 2 0 0 2 2 2 2 NMT1/THI5 like SPDY PF03771.11 gi|20092710|ref|NP_618785.1| - 0.0075 15.7 0.4 2.1 7.8 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF317) Cystatin PF00031.16 gi|20092710|ref|NP_618785.1| - 0.036 14.1 0.0 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Cystatin domain SBP_bac_7 PF03480.8 gi|20092710|ref|NP_618785.1| - 0.037 13.1 0.0 2 7.4 0.0 2.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 DUF3834 PF12916.2 gi|20092710|ref|NP_618785.1| - 0.13 11.2 0.0 1.8 7.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3834) Methyltransf_31 PF13847.1 gi|20092711|ref|NP_618786.1| - 1.3e-21 76.7 0.0 1.9e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092711|ref|NP_618786.1| - 1.6e-20 73.4 0.0 3e-20 72.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092711|ref|NP_618786.1| - 1.6e-15 56.8 0.0 2.4e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|20092711|ref|NP_618786.1| - 1.9e-15 56.9 0.0 4.1e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092711|ref|NP_618786.1| - 2.8e-15 56.5 0.0 5.9e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092711|ref|NP_618786.1| - 2e-13 50.9 0.0 4.4e-13 49.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092711|ref|NP_618786.1| - 1.7e-11 44.3 0.0 3e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|20092711|ref|NP_618786.1| - 3.4e-09 36.0 0.0 1.5e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|20092711|ref|NP_618786.1| - 1.3e-07 31.1 0.0 2.4e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|20092711|ref|NP_618786.1| - 0.0002 21.0 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092711|ref|NP_618786.1| - 0.00024 21.1 0.0 0.00044 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20092711|ref|NP_618786.1| - 0.00052 19.6 0.0 0.00092 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|20092711|ref|NP_618786.1| - 0.0013 18.4 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|20092711|ref|NP_618786.1| - 0.0016 17.5 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|20092711|ref|NP_618786.1| - 0.01 14.8 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.15 gi|20092711|ref|NP_618786.1| - 0.023 13.7 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|20092711|ref|NP_618786.1| - 0.024 13.7 0.0 0.055 12.5 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|20092711|ref|NP_618786.1| - 0.027 14.0 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF938 PF06080.7 gi|20092711|ref|NP_618786.1| - 0.039 13.4 0.0 0.092 12.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_15 PF09445.5 gi|20092711|ref|NP_618786.1| - 0.071 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DOT1 PF08123.8 gi|20092711|ref|NP_618786.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 DUF3249 PF11615.3 gi|20092711|ref|NP_618786.1| - 0.13 12.0 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3249) P-II PF00543.17 gi|20092712|ref|NP_618787.1| - 2.2e-32 111.5 0.2 2.5e-32 111.3 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|20092713|ref|NP_618788.1| - 4e-122 407.5 36.0 4.5e-122 407.3 25.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Ammonium_transp PF00909.16 gi|20092714|ref|NP_618789.1| - 2.5e-102 342.3 38.1 2.8e-102 342.1 26.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family ABC_tran PF00005.22 gi|20092715|ref|NP_618790.1| - 1.7e-32 112.5 0.0 2.6e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092715|ref|NP_618790.1| - 3e-15 56.9 3.5 7.9e-07 29.3 0.2 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20092715|ref|NP_618790.1| - 2.5e-08 33.4 2.5 1.9e-06 27.2 1.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20092715|ref|NP_618790.1| - 2.4e-06 26.8 3.3 0.0098 14.9 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|20092715|ref|NP_618790.1| - 3e-06 27.6 0.9 5.5e-06 26.8 0.6 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20092715|ref|NP_618790.1| - 3.5e-06 26.4 0.1 8.1e-06 25.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|20092715|ref|NP_618790.1| - 0.00014 21.8 1.6 0.011 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|20092715|ref|NP_618790.1| - 0.00021 21.1 0.0 0.0022 17.8 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|20092715|ref|NP_618790.1| - 0.00029 20.9 3.0 0.0032 17.5 2.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|20092715|ref|NP_618790.1| - 0.00037 20.3 0.4 0.16 11.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|20092715|ref|NP_618790.1| - 0.0011 17.8 0.0 0.0016 17.2 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_13 PF13166.1 gi|20092715|ref|NP_618790.1| - 0.0026 16.3 0.1 1.3 7.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|20092715|ref|NP_618790.1| - 0.0036 16.7 0.2 0.038 13.4 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|20092715|ref|NP_618790.1| - 0.0085 15.2 0.2 0.014 14.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|20092715|ref|NP_618790.1| - 0.013 14.0 0.2 0.32 9.5 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.9 gi|20092715|ref|NP_618790.1| - 0.017 14.8 0.1 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|20092715|ref|NP_618790.1| - 0.017 15.9 2.5 0.053 14.3 0.5 2.2 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|20092715|ref|NP_618790.1| - 0.034 13.8 0.7 0.088 12.4 0.5 1.9 1 1 0 1 1 1 0 Archaeal ATPase T2SE PF00437.15 gi|20092715|ref|NP_618790.1| - 0.036 12.9 0.1 0.062 12.1 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|20092715|ref|NP_618790.1| - 0.037 13.9 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|20092715|ref|NP_618790.1| - 0.056 12.8 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 MutS domain V Mg_chelatase PF01078.16 gi|20092715|ref|NP_618790.1| - 0.058 12.5 0.1 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|20092715|ref|NP_618790.1| - 0.059 12.7 0.1 0.21 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|20092715|ref|NP_618790.1| - 0.066 11.8 0.0 0.066 11.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.7 gi|20092715|ref|NP_618790.1| - 0.072 12.7 0.6 0.17 11.5 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|20092715|ref|NP_618790.1| - 0.083 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|20092715|ref|NP_618790.1| - 0.088 12.3 0.0 0.37 10.2 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Adeno_IVa2 PF02456.10 gi|20092715|ref|NP_618790.1| - 0.12 10.9 0.1 0.24 10.0 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein Rad17 PF03215.10 gi|20092715|ref|NP_618790.1| - 0.16 10.5 2.3 3.3 6.2 1.6 2.0 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF815 PF05673.8 gi|20092715|ref|NP_618790.1| - 0.4 9.5 2.6 0.29 10.0 0.1 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF815) Abhydrolase_5 PF12695.2 gi|20092716|ref|NP_618791.1| - 1e-16 61.0 0.0 4.3e-16 58.9 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|20092716|ref|NP_618791.1| - 4.1e-15 56.2 0.0 6.8e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|20092716|ref|NP_618791.1| - 1e-14 54.2 0.0 3e-07 29.8 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.13 gi|20092716|ref|NP_618791.1| - 1.2e-07 31.2 0.0 2.8e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|20092716|ref|NP_618791.1| - 4.8e-05 23.0 0.0 0.0002 21.0 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|20092716|ref|NP_618791.1| - 0.00087 18.9 0.0 0.05 13.1 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|20092716|ref|NP_618791.1| - 0.0011 18.7 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase BAAT_C PF08840.6 gi|20092716|ref|NP_618791.1| - 0.0062 16.2 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal FecCD PF01032.13 gi|20092717|ref|NP_618792.1| - 9.3e-86 287.4 36.8 1.1e-85 287.1 25.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|20092718|ref|NP_618793.1| - 1.5e-38 132.2 0.0 2.1e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein AraC_binding PF02311.14 gi|20092719|ref|NP_618794.1| - 1.7e-17 63.3 0.1 6.5e-17 61.4 0.1 1.8 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.6 gi|20092719|ref|NP_618794.1| - 5.7e-09 35.3 0.1 8.8e-09 34.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain 3-HAO PF06052.7 gi|20092719|ref|NP_618794.1| - 0.0034 16.8 0.0 0.0036 16.7 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_1 PF00190.17 gi|20092719|ref|NP_618794.1| - 0.029 13.7 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 Cupin FeS PF04060.8 gi|20092720|ref|NP_618795.1| - 3.1e-14 52.2 2.7 6.2e-14 51.2 1.8 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|20092720|ref|NP_618795.1| - 5.8e-07 29.2 0.0 1.6e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TBP PF00352.16 gi|20092720|ref|NP_618795.1| - 0.00013 21.2 0.0 0.00026 20.2 0.0 1.5 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) HTH_5 PF01022.15 gi|20092720|ref|NP_618795.1| - 0.0032 17.1 0.0 0.0073 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|20092720|ref|NP_618795.1| - 0.016 14.5 0.2 0.077 12.3 0.0 1.9 2 0 0 2 2 2 0 ArsR transcriptional regulator YhfH PF14149.1 gi|20092720|ref|NP_618795.1| - 0.033 13.9 0.5 0.071 12.9 0.4 1.5 1 0 0 1 1 1 0 YhfH-like protein FerA PF08165.6 gi|20092720|ref|NP_618795.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 FerA (NUC095) domain FeS PF04060.8 gi|20092721|ref|NP_618796.1| - 6.9e-14 51.1 1.5 1.4e-13 50.1 1.1 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|20092721|ref|NP_618796.1| - 3.7e-10 39.4 0.0 1e-09 38.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|20092721|ref|NP_618796.1| - 1.1e-05 25.0 0.0 2.7e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|20092721|ref|NP_618796.1| - 0.0031 16.8 0.4 0.0054 16.0 0.0 1.6 2 0 0 2 2 2 1 ArsR transcriptional regulator TBP PF00352.16 gi|20092721|ref|NP_618796.1| - 0.0092 15.3 0.1 0.024 13.9 0.0 1.6 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) DUF1900 PF08954.6 gi|20092721|ref|NP_618796.1| - 0.012 15.1 0.2 0.024 14.1 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1900) DrsE PF02635.10 gi|20092722|ref|NP_618797.1| - 3.7e-18 65.7 0.0 4.1e-18 65.5 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family FTCD_N PF07837.7 gi|20092722|ref|NP_618797.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain DrsE PF02635.10 gi|20092723|ref|NP_618798.1| - 4.5e-13 49.3 0.0 5e-13 49.1 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.7 gi|20092723|ref|NP_618798.1| - 0.0018 17.8 0.0 0.004 16.7 0.0 1.6 1 1 0 1 1 1 1 DsrH like protein DsrH PF04077.7 gi|20092724|ref|NP_618799.1| - 8.4e-08 31.7 0.0 1.1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.10 gi|20092724|ref|NP_618799.1| - 0.0021 18.0 0.0 0.0036 17.3 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family RasGEF_N PF00618.15 gi|20092724|ref|NP_618799.1| - 0.14 12.3 0.0 0.17 11.9 0.0 1.4 1 1 0 1 1 1 0 RasGEF N-terminal motif Wyosine_form PF08608.7 gi|20092725|ref|NP_618800.1| - 0.098 12.7 0.1 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Wyosine base formation Peripla_BP_2 PF01497.13 gi|20092726|ref|NP_618801.1| - 0.0022 17.1 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_18 PF12847.2 gi|20092728|ref|NP_618803.1| - 6.2e-13 49.2 0.0 6.3e-12 46.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092728|ref|NP_618803.1| - 6.6e-12 45.2 0.0 1.9e-11 43.7 0.0 1.8 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092728|ref|NP_618803.1| - 4.9e-08 33.2 0.0 1.7e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092728|ref|NP_618803.1| - 1.9e-07 31.4 0.0 5.2e-07 30.0 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092728|ref|NP_618803.1| - 2e-07 31.3 0.0 8.7e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092728|ref|NP_618803.1| - 3.9e-07 29.9 0.0 7.9e-07 28.9 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20092728|ref|NP_618803.1| - 4e-07 29.3 0.0 6.7e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|20092728|ref|NP_618803.1| - 2.2e-06 27.7 0.0 3.2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092728|ref|NP_618803.1| - 7.1e-06 25.4 0.0 1.9e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain GidB PF02527.10 gi|20092728|ref|NP_618803.1| - 1.2e-05 24.5 0.0 2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|20092728|ref|NP_618803.1| - 0.00013 21.2 0.0 0.00024 20.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|20092728|ref|NP_618803.1| - 0.0011 18.6 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|20092728|ref|NP_618803.1| - 0.0017 17.4 0.0 0.003 16.6 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|20092728|ref|NP_618803.1| - 0.0038 16.4 0.3 0.073 12.1 0.0 2.2 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|20092728|ref|NP_618803.1| - 0.0055 16.1 0.0 0.012 14.9 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|20092728|ref|NP_618803.1| - 0.013 14.5 0.0 0.037 13.1 0.0 1.7 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family SBP_bac_3 PF00497.15 gi|20092728|ref|NP_618803.1| - 0.014 14.6 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 FmrO PF07091.6 gi|20092728|ref|NP_618803.1| - 0.053 12.5 0.0 0.082 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|20092728|ref|NP_618803.1| - 0.054 13.1 0.0 0.13 11.9 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain NodS PF05401.6 gi|20092728|ref|NP_618803.1| - 0.083 12.2 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) AAA_21 PF13304.1 gi|20092729|ref|NP_618804.1| - 0.00012 22.1 0.0 0.00016 21.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20092729|ref|NP_618804.1| - 0.027 13.7 0.1 0.035 13.3 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CRCB PF02537.10 gi|20092730|ref|NP_618805.1| - 1.9e-31 108.3 11.8 2.2e-31 108.1 8.2 1.0 1 0 0 1 1 1 1 CrcB-like protein Vma12 PF11712.3 gi|20092730|ref|NP_618805.1| - 0.0025 17.5 4.5 0.13 11.9 0.1 2.4 2 1 0 2 2 2 2 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF2407_C PF13373.1 gi|20092730|ref|NP_618805.1| - 0.38 10.6 1.7 0.4 10.5 0.3 1.7 2 0 0 2 2 2 0 DUF2407 C-terminal domain DUF1212 PF06738.7 gi|20092730|ref|NP_618805.1| - 2.9 7.2 7.8 0.72 9.2 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) DUF190 PF02641.10 gi|20092731|ref|NP_618806.1| - 1.2e-33 114.9 0.4 1.4e-33 114.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 Rep_fac_C PF08542.6 gi|20092731|ref|NP_618806.1| - 0.059 13.3 0.0 2.8 8.0 0.0 2.1 1 1 1 2 2 2 0 Replication factor C C-terminal domain UPF0060 PF02694.10 gi|20092732|ref|NP_618807.1| - 8.8e-28 96.4 0.1 1.3e-27 95.8 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family DUF318 PF03773.8 gi|20092733|ref|NP_618808.1| - 2.7e-82 276.1 23.7 4.6e-82 275.4 16.4 1.3 1 1 0 1 1 1 1 Predicted permease Thioredoxin_3 PF13192.1 gi|20092734|ref|NP_618809.1| - 5e-31 106.3 1.4 5.4e-31 106.2 1.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|20092734|ref|NP_618809.1| - 1.7e-05 24.6 0.1 2.7e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|20092734|ref|NP_618809.1| - 0.019 15.0 0.4 0.073 13.0 0.2 1.7 1 1 1 2 2 2 0 Thioredoxin ArsD PF06953.6 gi|20092734|ref|NP_618809.1| - 0.042 14.0 0.0 0.068 13.3 0.0 1.4 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD BON PF04972.12 gi|20092734|ref|NP_618809.1| - 0.14 11.9 0.4 17 5.2 0.1 2.1 2 0 0 2 2 2 0 BON domain DGC PF08859.6 gi|20092735|ref|NP_618810.1| - 1.5e-36 124.6 0.6 1.8e-36 124.3 0.4 1.1 1 0 0 1 1 1 1 DGC domain WSC PF01822.14 gi|20092735|ref|NP_618810.1| - 0.091 12.6 0.3 0.7 9.8 0.0 2.0 2 0 0 2 2 2 0 WSC domain HTH_5 PF01022.15 gi|20092736|ref|NP_618811.1| - 2.6e-14 52.5 0.0 1e-13 50.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20092736|ref|NP_618811.1| - 5.8e-12 45.2 0.0 7.1e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|20092736|ref|NP_618811.1| - 0.00015 21.7 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|20092736|ref|NP_618811.1| - 0.028 13.7 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain Cdc6_C PF09079.6 gi|20092736|ref|NP_618811.1| - 0.057 13.1 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal DUF318 PF03773.8 gi|20092737|ref|NP_618812.1| - 7.9e-65 218.8 20.0 9.2e-65 218.6 13.8 1.0 1 0 0 1 1 1 1 Predicted permease DUF3937 PF13073.1 gi|20092737|ref|NP_618812.1| - 0.009 15.8 0.3 0.009 15.8 0.2 2.9 4 0 0 4 4 4 1 Protein of unknown function (DUF3937) Thioredoxin_3 PF13192.1 gi|20092738|ref|NP_618813.1| - 5.3e-28 96.6 4.3 5.9e-28 96.5 3.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.6 gi|20092738|ref|NP_618813.1| - 0.00034 20.7 0.1 0.00044 20.4 0.1 1.3 1 1 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD Glutaredoxin PF00462.19 gi|20092738|ref|NP_618813.1| - 0.0012 18.7 2.2 0.0028 17.5 1.5 1.7 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_2 PF13098.1 gi|20092738|ref|NP_618813.1| - 0.003 17.7 0.7 0.0095 16.1 0.5 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|20092738|ref|NP_618813.1| - 0.0059 16.2 0.4 0.0059 16.2 0.2 1.1 1 0 0 1 1 1 1 Thioredoxin BON PF04972.12 gi|20092738|ref|NP_618813.1| - 0.019 14.6 2.6 0.11 12.2 0.1 2.1 2 0 0 2 2 2 0 BON domain DUF2688 PF10892.3 gi|20092738|ref|NP_618813.1| - 0.047 13.3 1.8 0.064 12.9 1.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) Thioredoxin_4 PF13462.1 gi|20092738|ref|NP_618813.1| - 0.065 13.2 0.9 0.64 10.0 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Usp PF00582.21 gi|20092740|ref|NP_618815.1| - 7.5e-46 155.8 0.6 2.9e-25 89.0 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF3782 PF12644.2 gi|20092740|ref|NP_618815.1| - 0.066 13.0 1.1 3.5 7.4 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) DNA_photolyase PF00875.13 gi|20092740|ref|NP_618815.1| - 0.072 12.8 0.1 0.47 10.2 0.0 2.0 2 0 0 2 2 2 0 DNA photolyase SBF PF01758.11 gi|20092741|ref|NP_618816.1| - 3.1e-42 144.0 21.5 3.1e-42 144.0 14.9 2.4 3 0 0 3 3 3 2 Sodium Bile acid symporter family CMD PF02627.15 gi|20092742|ref|NP_618817.1| - 3.6e-23 81.2 0.1 4.5e-23 80.9 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF302 PF03625.9 gi|20092743|ref|NP_618818.1| - 2.8e-23 81.2 0.1 4.1e-23 80.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 DEK_C PF08766.6 gi|20092743|ref|NP_618818.1| - 0.34 10.7 0.2 0.34 10.7 0.1 1.9 2 0 0 2 2 2 0 DEK C terminal domain Methyltransf_12 PF08242.7 gi|20092747|ref|NP_618822.1| - 1.2e-13 51.3 0.0 1.8e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092747|ref|NP_618822.1| - 4.6e-13 49.7 0.0 7.1e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092747|ref|NP_618822.1| - 7.4e-13 48.3 0.0 1.2e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20092747|ref|NP_618822.1| - 1.5e-12 47.1 0.2 4.7e-12 45.5 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|20092747|ref|NP_618822.1| - 1.1e-11 45.0 0.0 1.6e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092747|ref|NP_618822.1| - 1.8e-10 40.7 0.0 2.9e-10 40.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092747|ref|NP_618822.1| - 1.1e-09 38.5 0.0 2.1e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092747|ref|NP_618822.1| - 5.5e-08 32.3 0.0 1.1e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|20092747|ref|NP_618822.1| - 1.2e-06 27.8 0.0 1.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|20092747|ref|NP_618822.1| - 4.3e-05 22.7 0.0 6.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|20092747|ref|NP_618822.1| - 7.6e-05 22.3 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|20092747|ref|NP_618822.1| - 0.00012 21.2 0.0 0.00024 20.2 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.8 gi|20092747|ref|NP_618822.1| - 0.00062 18.9 0.0 0.00084 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|20092747|ref|NP_618822.1| - 0.00073 18.9 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|20092747|ref|NP_618822.1| - 0.00078 19.4 0.0 0.0018 18.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.11 gi|20092747|ref|NP_618822.1| - 0.0024 16.8 0.0 0.011 14.6 0.0 2.0 1 1 0 1 1 1 1 mRNA capping enzyme tRNA_U5-meth_tr PF05958.6 gi|20092747|ref|NP_618822.1| - 0.02 13.5 0.0 0.027 13.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.6 gi|20092747|ref|NP_618822.1| - 0.09 12.1 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|20092747|ref|NP_618822.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase HTH_5 PF01022.15 gi|20092748|ref|NP_618823.1| - 1.3e-13 50.3 0.1 2.1e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20092748|ref|NP_618823.1| - 4.9e-06 26.2 0.0 8.8e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain CMD PF02627.15 gi|20092749|ref|NP_618824.1| - 2.5e-22 78.5 0.2 3.1e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Acetyltransf_1 PF00583.19 gi|20092750|ref|NP_618825.1| - 4.7e-12 45.7 0.0 7.9e-12 45.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|20092750|ref|NP_618825.1| - 2.6e-06 27.4 0.0 4.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20092750|ref|NP_618825.1| - 2.6e-06 27.5 0.0 3.7e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20092750|ref|NP_618825.1| - 1.5e-05 25.1 0.0 2.5e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20092750|ref|NP_618825.1| - 5e-05 22.9 0.0 9.1e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|20092750|ref|NP_618825.1| - 0.00028 21.0 0.0 0.00034 20.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20092750|ref|NP_618825.1| - 0.00073 19.5 0.0 0.0012 18.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20092750|ref|NP_618825.1| - 0.055 13.3 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DEAD PF00270.24 gi|20092752|ref|NP_618827.1| - 1.5e-48 164.5 0.1 1.3e-47 161.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|20092752|ref|NP_618827.1| - 2.2e-31 107.5 0.1 1.1e-30 105.2 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.10 gi|20092752|ref|NP_618827.1| - 2.5e-14 52.6 0.0 2e-13 49.8 0.0 2.6 2 0 0 2 2 2 1 DbpA RNA binding domain ResIII PF04851.10 gi|20092752|ref|NP_618827.1| - 0.00031 20.6 0.7 0.00073 19.4 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CMS1 PF14617.1 gi|20092752|ref|NP_618827.1| - 0.00035 19.7 0.8 0.00061 18.9 0.0 1.8 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.1 gi|20092752|ref|NP_618827.1| - 0.0035 16.9 0.1 0.025 14.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain Helicase_C_2 PF13307.1 gi|20092752|ref|NP_618827.1| - 0.076 12.9 0.0 0.46 10.4 0.0 2.3 3 0 0 3 3 3 0 Helicase C-terminal domain ABC_tran PF00005.22 gi|20092753|ref|NP_618828.1| - 1.1e-35 122.9 0.0 1.4e-35 122.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092753|ref|NP_618828.1| - 1.9e-14 54.3 0.0 2.3e-12 47.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20092753|ref|NP_618828.1| - 5.2e-06 25.8 0.2 0.00035 19.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092753|ref|NP_618828.1| - 0.00011 21.6 0.1 0.00027 20.3 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|20092753|ref|NP_618828.1| - 0.00015 21.8 0.3 0.0019 18.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|20092753|ref|NP_618828.1| - 0.00019 20.9 0.1 0.00029 20.3 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|20092753|ref|NP_618828.1| - 0.00077 18.6 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|20092753|ref|NP_618828.1| - 0.0018 18.2 0.1 0.0026 17.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|20092753|ref|NP_618828.1| - 0.0038 17.5 0.9 0.15 12.3 0.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|20092753|ref|NP_618828.1| - 0.0064 17.3 0.0 0.012 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20092753|ref|NP_618828.1| - 0.01 14.8 0.0 0.34 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|20092753|ref|NP_618828.1| - 0.012 15.0 0.0 0.031 13.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|20092753|ref|NP_618828.1| - 0.013 15.3 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|20092753|ref|NP_618828.1| - 0.022 14.4 0.0 0.29 10.8 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|20092753|ref|NP_618828.1| - 0.022 14.6 0.2 0.12 12.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|20092753|ref|NP_618828.1| - 0.025 14.9 0.1 0.05 13.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|20092753|ref|NP_618828.1| - 0.043 13.5 0.0 0.4 10.4 0.0 2.3 3 0 0 3 3 3 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|20092753|ref|NP_618828.1| - 0.055 13.4 0.0 0.15 11.9 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|20092753|ref|NP_618828.1| - 0.11 12.4 0.0 1.1 9.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.12 gi|20092753|ref|NP_618828.1| - 0.16 11.4 0.1 1.1 8.7 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NPCBM_assoc PF10633.4 gi|20092754|ref|NP_618829.1| - 1.9e-09 37.4 2.0 0.0022 18.0 0.0 4.4 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|20092754|ref|NP_618829.1| - 7.6e-09 35.5 6.5 7.5e-06 25.9 0.2 4.0 3 2 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|20092754|ref|NP_618829.1| - 7e-06 26.0 6.7 0.08 12.9 0.1 3.7 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|20092754|ref|NP_618829.1| - 0.0029 17.1 0.1 0.029 13.8 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF2393) Pilin PF00114.14 gi|20092754|ref|NP_618829.1| - 0.016 15.9 2.5 0.42 11.3 0.6 3.3 2 1 0 2 2 2 0 Pilin (bacterial filament) FlgD_ig PF13860.1 gi|20092754|ref|NP_618829.1| - 0.046 13.4 0.9 1.3 8.8 0.1 3.1 3 0 0 3 3 3 0 FlgD Ig-like domain DUF824 PF05688.6 gi|20092754|ref|NP_618829.1| - 0.34 10.5 3.6 1.9 8.2 0.0 3.7 4 1 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) MacB_PCD PF12704.2 gi|20092755|ref|NP_618830.1| - 1.2e-37 129.7 3.7 1.2e-37 129.7 2.6 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20092755|ref|NP_618830.1| - 2e-21 75.9 12.5 2.6e-21 75.5 5.5 2.1 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|20092756|ref|NP_618831.1| - 9.7e-35 119.8 0.0 1.4e-34 119.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092756|ref|NP_618831.1| - 3.2e-11 43.7 0.2 0.00025 21.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20092756|ref|NP_618831.1| - 4.4e-06 26.0 0.0 0.052 12.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092756|ref|NP_618831.1| - 0.00052 19.4 0.0 0.00093 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|20092756|ref|NP_618831.1| - 0.00093 18.7 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|20092756|ref|NP_618831.1| - 0.0034 16.6 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20092756|ref|NP_618831.1| - 0.0061 17.3 0.2 0.016 16.0 0.1 1.7 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|20092756|ref|NP_618831.1| - 0.0081 16.3 0.2 0.021 14.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20092756|ref|NP_618831.1| - 0.01 15.8 0.1 0.022 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|20092756|ref|NP_618831.1| - 0.023 15.0 0.0 0.28 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|20092756|ref|NP_618831.1| - 0.046 13.1 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|20092756|ref|NP_618831.1| - 0.052 13.8 0.1 0.089 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|20092756|ref|NP_618831.1| - 0.11 12.4 0.4 0.16 11.9 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase CARDB PF07705.6 gi|20092757|ref|NP_618832.1| - 6.5e-07 29.3 2.2 0.00048 20.1 0.0 3.2 3 2 1 4 4 4 2 CARDB NPCBM_assoc PF10633.4 gi|20092757|ref|NP_618832.1| - 1.9e-06 27.8 0.1 0.24 11.4 0.0 3.8 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|20092757|ref|NP_618832.1| - 0.00033 20.6 5.8 0.087 12.8 0.5 3.1 3 0 0 3 3 3 2 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|20092757|ref|NP_618832.1| - 0.0092 16.0 0.9 0.69 9.9 0.0 3.5 3 1 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain HATPase_c PF02518.21 gi|20092758|ref|NP_618833.1| - 2.8e-34 117.1 0.1 8.9e-34 115.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20092758|ref|NP_618833.1| - 3.2e-18 65.4 0.0 7.1e-18 64.3 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain MEDS PF14417.1 gi|20092758|ref|NP_618833.1| - 8.6e-12 44.5 0.0 1.5e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c_2 PF13581.1 gi|20092758|ref|NP_618833.1| - 0.011 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|20092758|ref|NP_618833.1| - 0.019 14.6 0.0 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MacB_PCD PF12704.2 gi|20092759|ref|NP_618834.1| - 5e-35 121.1 5.3 5e-35 121.1 3.7 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|20092759|ref|NP_618834.1| - 3.2e-18 65.6 15.6 3.2e-18 65.6 10.8 2.2 2 0 0 2 2 2 2 FtsX-like permease family YjgP_YjgQ PF03739.9 gi|20092759|ref|NP_618834.1| - 5.9 5.5 12.4 3.2 6.4 3.0 2.5 2 1 0 2 2 2 0 Predicted permease YjgP/YjgQ family Flavin_Reduct PF01613.13 gi|20092760|ref|NP_618835.1| - 5.7e-23 81.4 0.0 7.9e-23 81.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain FMN_red PF03358.10 gi|20092761|ref|NP_618836.1| - 6.4e-20 71.1 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20092761|ref|NP_618836.1| - 3.4e-09 36.4 0.0 4.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold ABC_tran PF00005.22 gi|20092762|ref|NP_618837.1| - 1.9e-52 177.1 0.0 1.2e-25 90.4 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|20092762|ref|NP_618837.1| - 1.1e-13 51.8 2.9 8e-05 22.7 0.2 4.2 2 2 0 3 3 3 3 AAA domain AAA_22 PF13401.1 gi|20092762|ref|NP_618837.1| - 5.2e-09 36.3 1.0 0.054 13.6 0.0 3.7 3 0 0 3 3 3 3 AAA domain AAA_15 PF13175.1 gi|20092762|ref|NP_618837.1| - 2e-08 33.7 0.7 0.019 13.9 0.0 4.0 4 0 0 4 4 4 2 AAA ATPase domain AAA_29 PF13555.1 gi|20092762|ref|NP_618837.1| - 3.8e-08 32.7 0.6 0.0056 16.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20092762|ref|NP_618837.1| - 4e-08 33.8 0.1 0.0011 19.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|20092762|ref|NP_618837.1| - 4.8e-08 32.3 0.1 0.0054 15.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20092762|ref|NP_618837.1| - 1.8e-07 31.9 2.3 0.065 14.0 0.0 3.7 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|20092762|ref|NP_618837.1| - 5.1e-07 29.8 0.1 0.059 13.3 0.0 2.9 4 0 0 4 4 3 2 AAA ATPase domain AAA_18 PF13238.1 gi|20092762|ref|NP_618837.1| - 7.2e-06 26.3 0.7 0.11 12.7 0.0 3.5 3 1 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|20092762|ref|NP_618837.1| - 1e-05 25.0 0.1 1.5 8.1 0.0 4.0 4 0 0 4 4 4 2 AAA domain NB-ARC PF00931.17 gi|20092762|ref|NP_618837.1| - 2.2e-05 23.4 0.5 0.067 12.0 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.1 gi|20092762|ref|NP_618837.1| - 2.7e-05 23.8 0.2 0.19 11.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain SbcCD_C PF13558.1 gi|20092762|ref|NP_618837.1| - 3e-05 23.8 1.4 0.061 13.2 0.0 4.3 4 2 0 4 4 3 1 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|20092762|ref|NP_618837.1| - 6.9e-05 22.4 0.4 0.28 10.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.14 gi|20092762|ref|NP_618837.1| - 0.00014 21.1 0.0 2.5 7.2 0.0 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|20092762|ref|NP_618837.1| - 0.00016 21.2 1.0 0.79 9.1 0.0 3.3 4 0 0 4 4 4 2 AAA-like domain AAA_19 PF13245.1 gi|20092762|ref|NP_618837.1| - 0.00018 21.2 0.4 2.5 7.9 0.0 3.4 3 0 0 3 3 3 1 Part of AAA domain MobB PF03205.9 gi|20092762|ref|NP_618837.1| - 0.00019 21.1 0.6 0.67 9.6 0.0 2.7 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|20092762|ref|NP_618837.1| - 0.0011 17.8 0.5 0.011 14.4 0.1 2.2 2 0 0 2 2 2 1 ArgK protein UPF0079 PF02367.12 gi|20092762|ref|NP_618837.1| - 0.0019 17.8 0.1 0.58 9.8 0.0 2.9 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|20092762|ref|NP_618837.1| - 0.0022 17.9 0.1 0.45 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|20092762|ref|NP_618837.1| - 0.0027 17.3 0.1 1 9.0 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_14 PF13173.1 gi|20092762|ref|NP_618837.1| - 0.0038 17.1 0.3 9.8 6.0 0.0 3.6 4 0 0 4 4 3 0 AAA domain AAA PF00004.24 gi|20092762|ref|NP_618837.1| - 0.0041 17.3 0.4 3 8.0 0.0 3.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|20092762|ref|NP_618837.1| - 0.0056 15.6 0.0 0.42 9.4 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|20092762|ref|NP_618837.1| - 0.0059 16.3 1.0 4.6 6.8 0.0 3.0 3 0 0 3 3 3 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|20092762|ref|NP_618837.1| - 0.0062 16.4 0.4 0.88 9.5 0.2 2.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|20092762|ref|NP_618837.1| - 0.0062 16.5 1.1 1.6 8.6 0.0 3.2 3 1 0 3 3 3 1 AAA domain Rad17 PF03215.10 gi|20092762|ref|NP_618837.1| - 0.01 14.5 0.0 1 7.9 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein IstB_IS21 PF01695.12 gi|20092762|ref|NP_618837.1| - 0.012 15.0 0.0 1 8.7 0.0 2.9 3 0 0 3 3 3 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|20092762|ref|NP_618837.1| - 0.012 15.2 1.0 0.94 9.1 0.1 2.6 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|20092762|ref|NP_618837.1| - 0.02 14.5 3.0 2.2 7.9 0.1 3.2 3 0 0 3 3 3 0 NACHT domain Mg_chelatase PF01078.16 gi|20092762|ref|NP_618837.1| - 0.021 14.0 0.1 0.76 8.8 0.0 2.8 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI G-alpha PF00503.15 gi|20092762|ref|NP_618837.1| - 0.023 13.4 0.1 1.1 7.8 0.0 2.3 2 0 0 2 2 2 0 G-protein alpha subunit Miro PF08477.8 gi|20092762|ref|NP_618837.1| - 0.026 14.9 1.2 8.6 6.8 0.0 3.8 4 0 0 4 4 3 0 Miro-like protein PduV-EutP PF10662.4 gi|20092762|ref|NP_618837.1| - 0.028 13.9 0.1 1.8 8.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF3987 PF13148.1 gi|20092762|ref|NP_618837.1| - 0.03 12.9 0.1 4.4 5.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) cobW PF02492.14 gi|20092762|ref|NP_618837.1| - 0.035 13.5 0.9 3.7 6.9 0.0 2.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.17 gi|20092762|ref|NP_618837.1| - 0.047 13.8 0.3 6 7.1 0.0 2.6 2 0 0 2 2 2 0 RNA helicase PIF1 PF05970.9 gi|20092762|ref|NP_618837.1| - 0.05 12.5 0.0 3.6 6.4 0.0 3.0 3 0 0 3 3 3 0 PIF1-like helicase AAA_5 PF07728.9 gi|20092762|ref|NP_618837.1| - 0.17 11.5 2.7 4.1 7.1 0.0 3.2 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|20092762|ref|NP_618837.1| - 0.44 10.0 1.8 6.3 6.3 0.0 3.0 4 0 0 4 4 3 0 AAA domain DUF87 PF01935.12 gi|20092762|ref|NP_618837.1| - 0.75 9.5 6.3 3.8 7.2 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function DUF87 MTH865 PF07747.6 gi|20092763|ref|NP_618838.1| - 1.4e-35 120.7 0.1 1.5e-35 120.6 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family PcrB PF01884.12 gi|20092764|ref|NP_618839.1| - 1.1e-77 260.4 2.0 1.3e-77 260.2 1.4 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|20092764|ref|NP_618839.1| - 6.4e-05 22.3 0.7 0.00011 21.6 0.2 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|20092764|ref|NP_618839.1| - 0.013 13.9 0.8 0.094 11.2 0.2 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|20092764|ref|NP_618839.1| - 0.016 14.2 0.1 0.03 13.4 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family CsgG PF03783.9 gi|20092764|ref|NP_618839.1| - 0.028 13.5 0.1 0.048 12.7 0.1 1.3 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG Ribosomal_L40e PF01020.12 gi|20092765|ref|NP_618840.1| - 1.3e-05 24.6 5.8 1.6e-05 24.3 4.0 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DNA_RNApol_7kD PF03604.8 gi|20092765|ref|NP_618840.1| - 0.0007 19.0 4.0 0.0011 18.3 2.8 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|20092765|ref|NP_618840.1| - 0.0028 17.4 0.5 0.0028 17.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|20092765|ref|NP_618840.1| - 0.003 16.9 1.0 0.0032 16.8 0.7 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|20092765|ref|NP_618840.1| - 0.025 14.0 0.6 0.039 13.4 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain FYVE PF01363.16 gi|20092765|ref|NP_618840.1| - 0.054 13.3 1.9 0.061 13.2 1.3 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-ribbon_3 PF13248.1 gi|20092765|ref|NP_618840.1| - 0.087 12.0 1.2 0.13 11.5 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|20092765|ref|NP_618840.1| - 0.12 11.4 3.0 0.18 10.9 2.1 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others C1_1 PF00130.17 gi|20092765|ref|NP_618840.1| - 0.13 12.0 1.0 0.18 11.5 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF35_N PF12172.3 gi|20092765|ref|NP_618840.1| - 0.32 10.9 2.6 0.57 10.1 1.5 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2082 PF09855.4 gi|20092765|ref|NP_618840.1| - 1.6 8.6 4.2 6.2 6.7 0.1 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.11 gi|20092765|ref|NP_618840.1| - 6.9 6.4 6.5 63 3.3 4.5 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Lyase_1 PF00206.15 gi|20092766|ref|NP_618841.1| - 5.9e-52 176.7 0.6 7.9e-52 176.3 0.4 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|20092766|ref|NP_618841.1| - 2.8e-26 91.3 0.4 9.9e-26 89.5 0.1 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus DUF4445 PF14574.1 gi|20092767|ref|NP_618842.1| - 1.1e-101 340.1 4.4 2e-101 339.2 3.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|20092767|ref|NP_618842.1| - 9.7e-07 29.0 12.3 2.1e-06 27.9 8.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092767|ref|NP_618842.1| - 7.3e-05 22.4 11.7 0.00018 21.2 8.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092767|ref|NP_618842.1| - 0.00019 21.6 13.1 0.0004 20.5 9.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20092767|ref|NP_618842.1| - 0.00047 19.9 12.3 0.001 18.8 8.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092767|ref|NP_618842.1| - 0.00089 19.9 13.6 0.002 18.8 2.8 2.7 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|20092767|ref|NP_618842.1| - 0.0014 18.4 5.6 0.0027 17.5 3.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20092767|ref|NP_618842.1| - 0.0032 17.8 5.3 0.038 14.4 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20092767|ref|NP_618842.1| - 0.0033 16.9 5.0 0.0033 16.9 3.4 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20092767|ref|NP_618842.1| - 0.042 13.7 14.6 0.78 9.7 3.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20092767|ref|NP_618842.1| - 0.056 13.7 13.9 1.1 9.7 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092767|ref|NP_618842.1| - 0.36 10.8 13.4 0.4 10.7 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain DUF326 PF03860.11 gi|20092767|ref|NP_618842.1| - 0.61 9.9 10.7 4.9 7.1 2.1 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Fer4_3 PF12798.2 gi|20092767|ref|NP_618842.1| - 3.5 8.4 17.8 4.1 8.1 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain KaiC PF06745.8 gi|20092768|ref|NP_618843.1| - 3.8e-46 157.0 0.0 4.2e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|20092768|ref|NP_618843.1| - 5.3e-07 29.2 0.0 9.5e-07 28.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|20092768|ref|NP_618843.1| - 1.1e-05 24.0 0.1 7.2e-05 21.3 0.1 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein NTPase_1 PF03266.10 gi|20092768|ref|NP_618843.1| - 7.4e-05 22.5 0.2 0.00024 20.8 0.2 1.7 1 1 0 1 1 1 1 NTPase RecA PF00154.16 gi|20092768|ref|NP_618843.1| - 8.7e-05 21.7 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|20092768|ref|NP_618843.1| - 0.00014 21.5 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|20092768|ref|NP_618843.1| - 0.00015 21.2 0.0 0.00053 19.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein T2SE PF00437.15 gi|20092768|ref|NP_618843.1| - 0.002 17.0 0.0 0.0031 16.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|20092768|ref|NP_618843.1| - 0.0027 17.6 0.1 0.0033 17.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|20092768|ref|NP_618843.1| - 0.0031 17.6 0.2 0.0082 16.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|20092768|ref|NP_618843.1| - 0.0037 16.7 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|20092768|ref|NP_618843.1| - 0.0042 16.5 0.0 0.0065 15.9 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain PAXNEB PF05625.6 gi|20092768|ref|NP_618843.1| - 0.0069 15.2 0.1 0.01 14.6 0.0 1.3 1 0 0 1 1 1 1 PAXNEB protein MORN_2 PF07661.8 gi|20092768|ref|NP_618843.1| - 0.0084 16.0 0.2 0.021 14.8 0.1 1.7 1 0 0 1 1 1 1 MORN repeat variant AAA_14 PF13173.1 gi|20092768|ref|NP_618843.1| - 0.011 15.6 0.1 0.12 12.2 0.1 2.3 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|20092768|ref|NP_618843.1| - 0.011 14.4 0.0 0.018 13.7 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus DnaB_C PF03796.10 gi|20092768|ref|NP_618843.1| - 0.012 14.4 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|20092768|ref|NP_618843.1| - 0.014 14.3 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UPF0079 PF02367.12 gi|20092768|ref|NP_618843.1| - 0.014 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|20092768|ref|NP_618843.1| - 0.019 14.8 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_29 PF13555.1 gi|20092768|ref|NP_618843.1| - 0.029 13.8 0.2 0.071 12.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|20092768|ref|NP_618843.1| - 0.031 13.9 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|20092768|ref|NP_618843.1| - 0.032 13.6 0.2 0.068 12.6 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|20092768|ref|NP_618843.1| - 0.099 12.9 1.4 0.21 11.8 0.4 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|20092768|ref|NP_618843.1| - 0.11 12.0 0.9 0.94 9.0 0.7 2.1 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|20092768|ref|NP_618843.1| - 0.14 11.9 0.1 0.34 10.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|20092769|ref|NP_618844.1| - 6.9e-43 146.4 1.3 9.2e-43 146.0 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|20092769|ref|NP_618844.1| - 0.052 13.0 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|20092770|ref|NP_618845.1| - 5.7e-32 110.2 5.0 3.4e-17 62.5 0.1 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F NapE PF06796.6 gi|20092770|ref|NP_618845.1| - 0.046 13.0 1.2 0.33 10.2 0.2 2.9 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE DUF912 PF06024.7 gi|20092770|ref|NP_618845.1| - 0.23 11.5 0.1 0.23 11.5 0.1 2.8 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) TRAP-gamma PF07074.7 gi|20092770|ref|NP_618845.1| - 0.27 10.7 5.2 0.14 11.7 0.1 2.8 3 0 0 3 3 3 0 Translocon-associated protein, gamma subunit (TRAP-gamma) DUF843 PF05814.6 gi|20092770|ref|NP_618845.1| - 2.1 8.2 14.6 0.55 10.0 2.4 3.8 3 0 0 3 3 3 0 Baculovirus protein of unknown function (DUF843) DUF2765 PF10963.3 gi|20092771|ref|NP_618846.1| - 0.078 12.9 0.1 0.39 10.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2765) Acetyltransf_1 PF00583.19 gi|20092772|ref|NP_618847.1| - 7.3e-07 29.1 0.0 2.2e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20092772|ref|NP_618847.1| - 1.4e-06 28.3 0.0 3.8e-06 26.9 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20092772|ref|NP_618847.1| - 4.5e-06 26.7 0.0 7.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20092772|ref|NP_618847.1| - 1.1e-05 25.4 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20092772|ref|NP_618847.1| - 0.00013 21.8 0.0 0.0007 19.4 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain LAM_C PF12544.3 gi|20092773|ref|NP_618848.1| - 8.6e-37 126.0 0.0 1.5e-36 125.2 0.0 1.4 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.16 gi|20092773|ref|NP_618848.1| - 4.6e-10 39.9 0.3 5e-08 33.3 0.1 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20092773|ref|NP_618848.1| - 5e-05 23.2 0.4 0.045 13.7 0.0 2.9 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20092773|ref|NP_618848.1| - 0.00027 21.0 0.3 0.0016 18.5 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain AChE_tetra PF08674.5 gi|20092774|ref|NP_618849.1| - 0.038 13.5 0.4 0.06 12.8 0.3 1.3 1 0 0 1 1 1 0 Acetylcholinesterase tetramerisation domain Na_H_Exchanger PF00999.16 gi|20092775|ref|NP_618850.1| - 2e-68 230.6 59.7 2e-68 230.6 41.3 1.5 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|20092775|ref|NP_618850.1| - 4.4e-25 87.9 0.6 1.3e-24 86.4 0.2 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|20092775|ref|NP_618850.1| - 1.7e-16 59.5 0.1 4.7e-16 58.1 0.1 1.8 1 0 0 1 1 1 1 TrkA-C domain AlaDh_PNT_C PF01262.16 gi|20092775|ref|NP_618850.1| - 0.16 11.5 0.0 0.71 9.4 0.0 1.9 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2178 PF09946.4 gi|20092777|ref|NP_618852.1| - 1.6e-40 137.2 4.4 1.9e-40 137.0 3.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) BPD_transp_1 PF00528.17 gi|20092777|ref|NP_618852.1| - 0.022 14.2 3.1 1.8 8.0 0.2 2.2 2 0 0 2 2 2 0 Binding-protein-dependent transport system inner membrane component PRA1 PF03208.14 gi|20092777|ref|NP_618852.1| - 0.065 12.5 2.8 0.099 11.9 1.7 1.6 1 1 0 1 1 1 0 PRA1 family protein Bax1-I PF01027.15 gi|20092777|ref|NP_618852.1| - 0.13 11.8 16.8 0.022 14.3 5.1 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 IncA PF04156.9 gi|20092777|ref|NP_618852.1| - 0.56 9.7 5.3 0.087 12.4 0.9 1.6 1 1 1 2 2 2 0 IncA protein DUF4131 PF13567.1 gi|20092777|ref|NP_618852.1| - 0.68 9.3 4.5 3.6 6.9 3.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) TcpE PF12648.2 gi|20092777|ref|NP_618852.1| - 2.5 8.3 5.2 0.95 9.6 0.7 1.9 2 0 0 2 2 2 0 TcpE family HTH_3 PF01381.17 gi|20092778|ref|NP_618853.1| - 7.6e-15 54.5 0.0 8.5e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|20092778|ref|NP_618853.1| - 2.8e-12 46.4 0.1 3e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|20092778|ref|NP_618853.1| - 6.6e-09 35.8 0.0 7.8e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|20092778|ref|NP_618853.1| - 3e-06 27.3 0.0 3.4e-06 27.1 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|20092778|ref|NP_618853.1| - 0.00039 19.6 0.0 0.00058 19.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20092778|ref|NP_618853.1| - 0.0034 17.1 0.0 0.0044 16.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.1 gi|20092778|ref|NP_618853.1| - 0.0082 15.7 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|20092778|ref|NP_618853.1| - 0.0087 15.8 0.0 0.011 15.5 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|20092778|ref|NP_618853.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|20092778|ref|NP_618853.1| - 0.032 13.5 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3770 PF12603.3 gi|20092778|ref|NP_618853.1| - 0.08 12.0 0.0 0.083 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3770) DUF1323 PF07037.6 gi|20092778|ref|NP_618853.1| - 0.085 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) Sigma70_r4_2 PF08281.7 gi|20092778|ref|NP_618853.1| - 0.13 11.7 0.0 0.51 9.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Nab6_mRNP_bdg PF10567.4 gi|20092779|ref|NP_618854.1| - 0.076 11.9 0.1 0.081 11.8 0.1 1.1 1 0 0 1 1 1 0 RNA-recognition motif Arginase PF00491.16 gi|20092780|ref|NP_618855.1| - 2.1e-78 263.4 0.0 2.3e-78 263.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.15 gi|20092781|ref|NP_618856.1| - 5.6e-13 48.6 0.5 1.2e-12 47.6 0.3 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|20092781|ref|NP_618856.1| - 0.00026 20.8 0.0 0.00047 19.9 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain PLDc PF00614.17 gi|20092781|ref|NP_618856.1| - 0.13 12.0 0.0 0.47 10.3 0.0 2.0 2 1 0 2 2 2 0 Phospholipase D Active site motif DDE_Tnp_ISL3 PF01610.12 gi|20092782|ref|NP_618857.1| - 1.7e-76 257.0 5.2 2.8e-76 256.4 3.6 1.3 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|20092782|ref|NP_618857.1| - 7.3e-13 48.3 6.6 5.7e-11 42.2 4.8 2.7 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|20092782|ref|NP_618857.1| - 5e-06 25.5 0.2 1.1e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.4 gi|20092782|ref|NP_618857.1| - 0.0013 18.8 0.2 0.026 14.6 0.0 2.3 1 1 1 2 2 2 1 MULE transposase domain Lar_restr_allev PF14354.1 gi|20092782|ref|NP_618857.1| - 0.1 12.9 2.5 0.25 11.6 1.7 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|20092782|ref|NP_618857.1| - 2.3 8.3 7.2 0.12 12.4 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AFOR_C PF01314.13 gi|20092783|ref|NP_618858.1| - 4.1e-99 331.8 0.0 7.3e-99 331.0 0.0 1.4 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|20092783|ref|NP_618858.1| - 2.5e-67 226.1 0.4 3.3e-67 225.7 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NUDIX PF00293.23 gi|20092784|ref|NP_618859.1| - 5.6e-22 77.8 0.0 7.6e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|20092784|ref|NP_618859.1| - 2e-05 23.9 0.0 2.4e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Peptidase_M10 PF00413.19 gi|20092785|ref|NP_618860.1| - 1.9e-14 53.6 0.0 5.7e-14 52.1 0.0 1.7 1 1 0 1 1 1 1 Matrixin Peptidase_M57 PF12388.3 gi|20092785|ref|NP_618860.1| - 0.0005 19.4 0.0 0.00066 19.0 0.0 1.1 1 0 0 1 1 1 1 Dual-action HEIGH metallo-peptidase Peptidase_M66 PF10462.4 gi|20092785|ref|NP_618860.1| - 0.00069 18.5 0.1 0.00094 18.1 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_2 PF13574.1 gi|20092785|ref|NP_618860.1| - 0.0012 18.9 0.0 0.0015 18.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|20092785|ref|NP_618860.1| - 0.0016 17.8 0.4 0.0056 16.0 0.0 1.8 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Metallopep PF12044.3 gi|20092785|ref|NP_618860.1| - 0.0043 15.5 0.1 0.0058 15.1 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.1 gi|20092785|ref|NP_618860.1| - 0.0075 16.7 0.0 0.0098 16.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M54 PF07998.6 gi|20092785|ref|NP_618860.1| - 0.0095 15.7 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.1 gi|20092785|ref|NP_618860.1| - 0.02 14.4 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like FixQ PF05545.6 gi|20092785|ref|NP_618860.1| - 0.062 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Reprolysin_5 PF13688.1 gi|20092785|ref|NP_618860.1| - 0.075 12.9 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 CMD PF02627.15 gi|20092786|ref|NP_618861.1| - 1.6e-14 53.5 0.0 2.3e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF4599 PF15371.1 gi|20092786|ref|NP_618861.1| - 0.16 12.0 0.2 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4599) MCR_C PF04609.7 gi|20092787|ref|NP_618862.1| - 1.1e-112 375.2 0.2 1.2e-112 375.0 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|20092788|ref|NP_618863.1| - 4.8e-68 228.0 0.3 5.5e-68 227.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|20092789|ref|NP_618864.1| - 8.7e-56 189.1 4.7 1.2e-55 188.7 3.3 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|20092789|ref|NP_618864.1| - 0.0045 15.3 2.4 0.12 10.7 0.2 2.5 2 0 0 2 2 2 2 MutL protein Hydant_A_N PF05378.8 gi|20092789|ref|NP_618864.1| - 0.0082 15.6 1.3 0.01 15.3 0.2 1.7 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|20092789|ref|NP_618864.1| - 0.12 12.2 4.0 4.2 7.2 2.8 2.7 1 1 0 1 1 1 0 Cell division protein FtsA DUF2112 PF09885.4 gi|20092790|ref|NP_618865.1| - 6.7e-66 220.3 0.1 7.9e-66 220.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|20092791|ref|NP_618866.1| - 1e-44 150.2 0.0 1.4e-44 149.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) BCL_N PF04714.8 gi|20092791|ref|NP_618866.1| - 0.14 11.7 2.8 0.79 9.3 0.1 2.7 3 0 0 3 3 3 0 BCL7, N-terminal conserver region Cut12 PF11500.3 gi|20092792|ref|NP_618867.1| - 0.00064 19.4 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Spindle pole body formation-associated protein Pro_isomerase PF00160.16 gi|20092792|ref|NP_618867.1| - 0.00092 19.4 0.0 0.34 11.1 0.0 3.4 3 1 0 3 3 3 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer2_4 PF13510.1 gi|20092792|ref|NP_618867.1| - 0.028 14.2 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ABC_tran PF00005.22 gi|20092793|ref|NP_618868.1| - 1.5e-49 167.8 0.4 3.1e-24 85.8 0.0 2.8 3 1 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|20092793|ref|NP_618868.1| - 1.1e-06 28.8 1.3 0.43 10.4 0.1 4.1 3 1 0 3 3 3 1 AAA domain SMC_N PF02463.14 gi|20092793|ref|NP_618868.1| - 1.5e-05 24.3 0.6 0.18 11.0 0.0 3.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20092793|ref|NP_618868.1| - 3.1e-05 23.2 0.7 0.085 11.8 0.0 3.6 4 0 0 4 4 4 1 AAA ATPase domain DUF258 PF03193.11 gi|20092793|ref|NP_618868.1| - 3.4e-05 23.0 0.1 0.22 10.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20092793|ref|NP_618868.1| - 0.00022 22.0 1.4 0.1 13.4 0.3 3.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20092793|ref|NP_618868.1| - 0.00056 19.3 1.3 0.68 9.5 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|20092793|ref|NP_618868.1| - 0.00069 19.4 0.0 1.1 9.1 0.0 3.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|20092793|ref|NP_618868.1| - 0.00071 19.8 0.6 0.18 12.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|20092793|ref|NP_618868.1| - 0.0013 18.3 0.5 1.5 8.4 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|20092793|ref|NP_618868.1| - 0.0045 15.8 2.1 0.93 8.2 0.1 2.4 2 0 0 2 2 2 2 NB-ARC domain PRK PF00485.13 gi|20092793|ref|NP_618868.1| - 0.0055 16.2 0.1 2.6 7.5 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|20092793|ref|NP_618868.1| - 0.0057 16.7 0.1 2.9 8.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|20092793|ref|NP_618868.1| - 0.0057 16.9 1.3 1.4 9.2 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|20092793|ref|NP_618868.1| - 0.0077 16.1 0.1 1.8 8.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20092793|ref|NP_618868.1| - 0.019 14.9 2.5 0.9 9.4 0.2 3.1 3 1 1 4 4 4 0 AAA ATPase domain AAA_25 PF13481.1 gi|20092793|ref|NP_618868.1| - 0.025 13.9 0.1 2.5 7.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|20092793|ref|NP_618868.1| - 0.028 13.5 0.2 0.59 9.2 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|20092793|ref|NP_618868.1| - 0.034 13.7 0.1 9.5 5.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|20092793|ref|NP_618868.1| - 0.035 13.9 4.6 0.66 9.7 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 MobB PF03205.9 gi|20092793|ref|NP_618868.1| - 0.04 13.6 1.6 2.6 7.7 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Rad50_zn_hook PF04423.9 gi|20092793|ref|NP_618868.1| - 0.11 12.0 0.4 0.36 10.3 0.2 1.9 1 0 0 1 1 1 0 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.11 gi|20092793|ref|NP_618868.1| - 0.13 11.9 0.1 0.4 10.4 0.1 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain KaiC PF06745.8 gi|20092793|ref|NP_618868.1| - 0.14 11.2 3.6 0.44 9.6 0.4 2.9 2 1 0 2 2 2 0 KaiC IstB_IS21 PF01695.12 gi|20092793|ref|NP_618868.1| - 0.16 11.3 0.6 40 3.5 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein zf-FPG_IleRS PF06827.9 gi|20092793|ref|NP_618868.1| - 0.25 11.0 0.1 0.25 11.0 0.0 1.9 2 0 0 2 2 1 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|20092793|ref|NP_618868.1| - 0.27 10.9 1.6 0.48 10.1 0.3 2.0 2 0 0 2 2 1 0 Hydrogenase expression/synthesis hypA family AAA_10 PF12846.2 gi|20092793|ref|NP_618868.1| - 0.28 10.5 2.5 7.8 5.8 0.1 2.5 2 1 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|20092793|ref|NP_618868.1| - 0.3 9.4 0.2 5.2 5.3 0.0 2.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|20092793|ref|NP_618868.1| - 5.1 6.7 5.7 1 8.9 0.3 2.3 2 0 0 2 2 2 0 NACHT domain Hydrolase PF00702.21 gi|20092794|ref|NP_618869.1| - 1e-16 61.9 0.0 2e-16 61.0 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|20092794|ref|NP_618869.1| - 1.2e-06 28.8 0.1 1.4e-06 28.5 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|20092794|ref|NP_618869.1| - 2.2e-05 24.0 0.0 6.1e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.7 gi|20092794|ref|NP_618869.1| - 3.3e-05 23.5 0.1 0.1 12.1 0.0 2.9 3 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase DUF1119 PF06550.6 gi|20092795|ref|NP_618870.1| - 4.2e-132 439.5 29.6 5e-132 439.2 20.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) ORMDL PF04061.9 gi|20092795|ref|NP_618870.1| - 7 6.2 10.7 0.82 9.2 2.6 2.4 2 0 0 2 2 2 0 ORMDL family Peptidase_C11 PF03415.9 gi|20092798|ref|NP_618873.1| - 4.9e-169 562.5 0.0 5.8e-169 562.2 0.0 1.1 1 0 0 1 1 1 1 Clostripain family XPG_I PF00867.13 gi|20092799|ref|NP_618874.1| - 5.8e-28 96.7 0.3 3.9e-27 94.1 0.0 2.3 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|20092799|ref|NP_618874.1| - 2.2e-20 72.7 0.0 5.8e-20 71.4 0.0 1.7 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|20092799|ref|NP_618874.1| - 4.6e-05 23.5 0.2 0.00012 22.2 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|20092799|ref|NP_618874.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Cation_efflux PF01545.16 gi|20092800|ref|NP_618875.1| - 8.2e-59 199.0 5.5 1e-58 198.7 3.8 1.0 1 0 0 1 1 1 1 Cation efflux family Phage_holin_3 PF05106.7 gi|20092800|ref|NP_618875.1| - 0.0081 16.1 0.1 0.22 11.5 0.0 2.5 2 0 0 2 2 2 1 Phage holin family (Lysis protein S) PepSY_TM_3 PF13706.1 gi|20092800|ref|NP_618875.1| - 0.13 11.6 5.3 3.1 7.2 0.3 2.9 2 0 0 2 2 2 0 PepSY-associated TM helix GHMP_kinases_N PF00288.21 gi|20092801|ref|NP_618876.1| - 1.7e-09 37.6 0.2 3e-09 36.7 0.2 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|20092801|ref|NP_618876.1| - 0.00027 21.0 0.0 0.00057 20.0 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal iPGM_N PF06415.8 gi|20092802|ref|NP_618877.1| - 1.9e-90 302.1 0.0 2.6e-90 301.6 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|20092802|ref|NP_618877.1| - 3.2e-90 301.9 0.0 3.7e-90 301.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|20092802|ref|NP_618877.1| - 1.4e-08 34.4 0.0 2e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|20092802|ref|NP_618877.1| - 6.3e-05 22.3 0.0 0.00011 21.5 0.0 1.4 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.7 gi|20092802|ref|NP_618877.1| - 0.078 12.6 0.2 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 PglZ domain Alk_phosphatase PF00245.15 gi|20092802|ref|NP_618877.1| - 0.098 11.3 0.2 0.16 10.6 0.1 1.3 1 0 0 1 1 1 0 Alkaline phosphatase Grp1_Fun34_YaaH PF01184.14 gi|20092803|ref|NP_618878.1| - 2.1e-57 193.8 16.5 2.5e-57 193.5 11.4 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family FAM70 PF14967.1 gi|20092803|ref|NP_618878.1| - 9.9 5.2 11.1 4.7 6.3 2.5 2.0 2 0 0 2 2 2 0 FAM70 protein Methyltransf_18 PF12847.2 gi|20092804|ref|NP_618879.1| - 9.8e-05 22.9 0.0 0.00015 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20092804|ref|NP_618879.1| - 0.0024 16.9 0.0 0.003 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|20092804|ref|NP_618879.1| - 0.0075 16.0 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|20092804|ref|NP_618879.1| - 0.012 14.7 0.0 0.016 14.3 0.0 1.3 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G DREV PF05219.7 gi|20092804|ref|NP_618879.1| - 0.078 11.8 0.0 0.079 11.8 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase UbiA PF01040.13 gi|20092805|ref|NP_618880.1| - 2e-26 92.7 6.8 2.5e-26 92.4 4.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1724 PF08350.5 gi|20092806|ref|NP_618881.1| - 1e-24 85.8 0.4 2.6e-24 84.5 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20092806|ref|NP_618881.1| - 0.0016 18.0 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20092806|ref|NP_618881.1| - 0.021 14.6 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|20092806|ref|NP_618881.1| - 0.028 14.7 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|20092806|ref|NP_618881.1| - 0.045 13.4 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|20092806|ref|NP_618881.1| - 0.049 13.0 0.1 0.16 11.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|20092806|ref|NP_618881.1| - 0.076 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.14 gi|20092806|ref|NP_618881.1| - 0.079 12.6 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AICARFT_IMPCHas PF01808.13 gi|20092807|ref|NP_618882.1| - 3e-89 299.2 0.0 3.9e-89 298.8 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|20092807|ref|NP_618882.1| - 2.8e-27 94.4 0.0 5.9e-27 93.4 0.0 1.6 1 0 0 1 1 1 1 MGS-like domain MgsA_C PF12002.3 gi|20092807|ref|NP_618882.1| - 0.00034 20.3 0.0 0.00086 19.0 0.0 1.6 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal Pyr_redox_2 PF07992.9 gi|20092808|ref|NP_618883.1| - 2.7e-31 109.0 0.0 4.2e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|20092808|ref|NP_618883.1| - 3.1e-18 65.7 0.0 6.1e-18 64.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|20092808|ref|NP_618883.1| - 7.5e-16 58.3 0.4 6.3e-14 52.1 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|20092808|ref|NP_618883.1| - 3.6e-09 36.0 0.4 0.00073 18.5 0.1 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|20092808|ref|NP_618883.1| - 7.3e-09 35.9 0.0 8.1e-06 26.0 0.0 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|20092808|ref|NP_618883.1| - 0.00088 19.6 0.4 1.7 9.1 0.0 2.8 2 1 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent GDI PF00996.13 gi|20092808|ref|NP_618883.1| - 0.0013 17.1 0.0 0.0019 16.5 0.0 1.2 1 0 0 1 1 1 1 GDP dissociation inhibitor AlaDh_PNT_C PF01262.16 gi|20092808|ref|NP_618883.1| - 0.0015 18.0 0.0 0.12 11.9 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|20092808|ref|NP_618883.1| - 0.0018 17.9 0.2 0.25 10.9 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|20092808|ref|NP_618883.1| - 0.011 14.8 2.1 0.58 9.1 0.1 2.7 2 1 1 3 3 3 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|20092808|ref|NP_618883.1| - 0.014 14.5 0.0 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|20092808|ref|NP_618883.1| - 0.029 12.8 0.2 1.5 7.2 0.0 2.8 2 1 1 3 3 3 0 HI0933-like protein TrkA_N PF02254.13 gi|20092808|ref|NP_618883.1| - 0.046 13.7 0.4 1.6 8.7 0.0 3.0 3 1 0 3 3 3 0 TrkA-N domain XdhC_C PF13478.1 gi|20092808|ref|NP_618883.1| - 0.051 13.8 0.0 4 7.7 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain FAD_binding_2 PF00890.19 gi|20092808|ref|NP_618883.1| - 0.061 12.1 1.2 0.16 10.7 0.0 2.2 2 1 1 3 3 3 0 FAD binding domain Amino_oxidase PF01593.19 gi|20092808|ref|NP_618883.1| - 0.084 11.9 0.1 0.53 9.3 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Thi4 PF01946.12 gi|20092808|ref|NP_618883.1| - 0.09 11.8 0.1 0.53 9.3 0.0 2.2 3 0 0 3 3 3 0 Thi4 family NAD_binding_8 PF13450.1 gi|20092808|ref|NP_618883.1| - 0.12 12.4 1.8 1.4 8.9 0.2 2.9 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|20092808|ref|NP_618883.1| - 0.14 11.2 1.2 12 4.7 0.0 2.8 2 1 1 3 3 3 0 FAD binding domain HhH-GPD PF00730.20 gi|20092809|ref|NP_618884.1| - 9.9e-23 80.4 0.1 1.3e-22 80.1 0.1 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|20092809|ref|NP_618884.1| - 1.4e-08 34.0 0.0 3.5e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|20092809|ref|NP_618884.1| - 0.0036 17.4 0.1 0.063 13.4 0.1 2.5 1 1 0 1 1 1 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|20092809|ref|NP_618884.1| - 0.0041 17.2 4.5 0.0041 17.2 3.1 2.1 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III DUF3349 PF11829.3 gi|20092809|ref|NP_618884.1| - 0.0096 16.3 0.0 0.057 13.8 0.0 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF3349) Methyltransf_11 PF08241.7 gi|20092810|ref|NP_618885.1| - 1.1e-26 93.0 0.0 1.8e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092810|ref|NP_618885.1| - 3.4e-23 81.9 0.0 4.8e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092810|ref|NP_618885.1| - 6.9e-18 64.6 0.0 9.5e-18 64.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|20092810|ref|NP_618885.1| - 1.2e-15 58.0 0.0 2.1e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092810|ref|NP_618885.1| - 3.2e-15 56.3 0.0 5.3e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092810|ref|NP_618885.1| - 1.7e-14 53.8 0.0 2.4e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092810|ref|NP_618885.1| - 2.8e-12 46.7 0.0 9.1e-12 45.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092810|ref|NP_618885.1| - 5.6e-12 46.0 0.0 8.6e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20092810|ref|NP_618885.1| - 6.4e-09 35.4 0.0 1.7e-08 34.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|20092810|ref|NP_618885.1| - 9.8e-07 28.1 0.0 1.5e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|20092810|ref|NP_618885.1| - 6.1e-06 25.8 0.0 2.5e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.14 gi|20092810|ref|NP_618885.1| - 1.1e-05 25.0 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|20092810|ref|NP_618885.1| - 4.5e-05 23.1 0.0 7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|20092810|ref|NP_618885.1| - 9.1e-05 21.9 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.5 gi|20092810|ref|NP_618885.1| - 0.00026 20.5 0.0 0.00039 20.0 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase NodS PF05401.6 gi|20092810|ref|NP_618885.1| - 0.00039 19.8 0.0 0.00056 19.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20092810|ref|NP_618885.1| - 0.0016 17.6 0.0 0.0023 17.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|20092810|ref|NP_618885.1| - 0.0048 16.0 0.0 0.0071 15.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|20092810|ref|NP_618885.1| - 0.005 16.4 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 AdoMet_MTase PF07757.8 gi|20092810|ref|NP_618885.1| - 0.0057 16.7 0.0 0.16 12.1 0.0 2.3 2 0 0 2 2 2 1 Predicted AdoMet-dependent methyltransferase RrnaAD PF00398.15 gi|20092810|ref|NP_618885.1| - 0.0069 15.4 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|20092810|ref|NP_618885.1| - 0.011 14.4 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|20092810|ref|NP_618885.1| - 0.025 14.2 0.0 0.043 13.4 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase Mur_ligase PF01225.20 gi|20092810|ref|NP_618885.1| - 0.051 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_16 PF10294.4 gi|20092810|ref|NP_618885.1| - 0.056 12.8 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DREV PF05219.7 gi|20092810|ref|NP_618885.1| - 0.075 11.8 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase GidB PF02527.10 gi|20092810|ref|NP_618885.1| - 0.085 11.9 0.0 0.18 10.9 0.0 1.6 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G 3HCDH_N PF02737.13 gi|20092810|ref|NP_618885.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAS PF03059.11 gi|20092811|ref|NP_618886.1| - 3e-20 72.5 0.0 3.8e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_18 PF12847.2 gi|20092811|ref|NP_618886.1| - 1.1e-06 29.1 0.0 2.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092811|ref|NP_618886.1| - 9.2e-06 25.3 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092811|ref|NP_618886.1| - 0.00081 19.4 0.0 0.0022 18.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|20092811|ref|NP_618886.1| - 0.0042 16.7 0.0 0.0061 16.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|20092811|ref|NP_618886.1| - 0.0082 15.2 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|20092811|ref|NP_618886.1| - 0.0093 14.9 0.0 0.018 14.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_3 PF01596.12 gi|20092811|ref|NP_618886.1| - 0.03 13.3 0.0 0.055 12.5 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_25 PF13649.1 gi|20092811|ref|NP_618886.1| - 0.037 14.3 0.0 0.091 13.1 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092811|ref|NP_618886.1| - 0.04 14.3 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|20092811|ref|NP_618886.1| - 0.064 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|20092811|ref|NP_618886.1| - 0.093 13.2 0.0 0.25 11.8 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_10 PF05971.7 gi|20092811|ref|NP_618886.1| - 0.11 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF890) NAS PF03059.11 gi|20092812|ref|NP_618887.1| - 8e-31 107.2 0.0 1e-30 106.8 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_18 PF12847.2 gi|20092812|ref|NP_618887.1| - 0.027 15.0 0.0 0.086 13.4 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain CbiQ PF02361.11 gi|20092813|ref|NP_618888.1| - 1.1e-31 110.0 8.4 1.4e-31 109.8 5.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein DAD PF02109.11 gi|20092813|ref|NP_618888.1| - 9.2 6.3 8.1 12 5.9 0.4 3.1 3 0 0 3 3 3 0 DAD family ABC_tran PF00005.22 gi|20092814|ref|NP_618889.1| - 5.4e-33 114.2 0.0 7.7e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092814|ref|NP_618889.1| - 3.8e-17 63.1 2.4 4.6e-13 49.7 0.0 2.6 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|20092814|ref|NP_618889.1| - 3.4e-08 32.9 0.0 1.4e-07 30.9 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|20092814|ref|NP_618889.1| - 0.00036 19.7 0.0 0.13 11.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|20092814|ref|NP_618889.1| - 0.0025 17.3 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|20092814|ref|NP_618889.1| - 0.01 15.3 0.0 0.53 9.6 0.0 2.1 1 1 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|20092814|ref|NP_618889.1| - 0.011 15.5 0.1 0.17 11.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|20092814|ref|NP_618889.1| - 0.017 14.3 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|20092814|ref|NP_618889.1| - 0.03 14.6 0.0 0.052 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|20092814|ref|NP_618889.1| - 0.036 14.5 0.0 0.08 13.4 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|20092814|ref|NP_618889.1| - 0.038 13.9 0.0 0.091 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|20092814|ref|NP_618889.1| - 0.056 12.6 0.0 0.094 11.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|20092814|ref|NP_618889.1| - 0.08 12.9 0.2 0.15 12.0 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase G-alpha PF00503.15 gi|20092814|ref|NP_618889.1| - 0.18 10.4 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ABC_tran PF00005.22 gi|20092815|ref|NP_618890.1| - 9.2e-31 106.9 0.0 1.6e-30 106.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092815|ref|NP_618890.1| - 4.1e-19 69.6 3.4 6.4e-17 62.4 2.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20092815|ref|NP_618890.1| - 6.3e-11 41.9 0.0 3.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|20092815|ref|NP_618890.1| - 1.7e-09 37.2 0.0 3.6e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20092815|ref|NP_618890.1| - 6.4e-05 22.4 0.1 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|20092815|ref|NP_618890.1| - 0.0015 18.9 0.1 0.002 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20092815|ref|NP_618890.1| - 0.0028 17.9 0.5 0.014 15.6 0.0 2.2 2 2 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|20092815|ref|NP_618890.1| - 0.008 16.0 0.0 0.12 12.2 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|20092815|ref|NP_618890.1| - 0.013 13.9 0.0 0.36 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|20092815|ref|NP_618890.1| - 0.016 15.1 0.2 0.075 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|20092815|ref|NP_618890.1| - 0.023 14.6 0.0 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|20092815|ref|NP_618890.1| - 0.049 14.1 0.0 0.12 12.8 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|20092815|ref|NP_618890.1| - 0.06 12.5 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|20092815|ref|NP_618890.1| - 0.071 13.9 0.0 0.31 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|20092815|ref|NP_618890.1| - 0.1 12.0 0.0 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family CbiQ PF02361.11 gi|20092816|ref|NP_618891.1| - 4.3e-29 101.6 13.4 5.6e-29 101.3 9.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiM PF01891.11 gi|20092817|ref|NP_618892.1| - 7.9e-61 205.2 16.8 7.9e-61 205.2 11.7 2.1 2 0 0 2 2 2 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.1 gi|20092817|ref|NP_618892.1| - 3.2e-10 39.5 0.4 3.2e-10 39.5 0.3 2.6 3 0 0 3 3 3 1 PDGLE domain DUF3816 PF12822.2 gi|20092817|ref|NP_618892.1| - 0.0017 18.2 24.3 0.0017 18.2 16.8 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF3816) Yip1 PF04893.12 gi|20092817|ref|NP_618892.1| - 0.0081 15.6 1.3 0.0081 15.6 0.9 3.5 1 1 1 2 2 2 1 Yip1 domain E1-E2_ATPase PF00122.15 gi|20092817|ref|NP_618892.1| - 0.63 9.0 7.1 2.3 7.1 0.3 2.5 2 1 0 2 2 2 0 E1-E2 ATPase cwf18 PF08315.7 gi|20092818|ref|NP_618893.1| - 0.58 10.6 3.8 0.65 10.4 2.6 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor MEDS PF14417.1 gi|20092820|ref|NP_618895.1| - 6.8e-85 282.9 0.0 1.4e-84 281.9 0.0 1.5 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_3 PF08447.6 gi|20092820|ref|NP_618895.1| - 1.4e-39 134.1 0.5 3.4e-20 71.9 0.1 2.8 2 0 0 2 2 2 2 PAS fold HisKA_2 PF07568.7 gi|20092820|ref|NP_618895.1| - 2e-33 114.0 1.2 1e-32 111.7 0.9 2.3 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|20092820|ref|NP_618895.1| - 5.1e-18 65.3 0.3 8e-08 32.6 0.0 2.9 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|20092820|ref|NP_618895.1| - 9e-11 41.4 0.1 2.9e-10 39.8 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|20092820|ref|NP_618895.1| - 9.6e-08 31.8 0.0 0.0057 16.4 0.1 3.0 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.1 gi|20092820|ref|NP_618895.1| - 8.5e-05 22.3 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|20092820|ref|NP_618895.1| - 0.0026 17.7 0.0 0.21 11.6 0.0 2.4 2 0 0 2 2 2 1 PAS fold HWE_HK PF07536.9 gi|20092820|ref|NP_618895.1| - 0.0046 17.3 1.0 0.019 15.3 0.1 2.4 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_3 PF13589.1 gi|20092820|ref|NP_618895.1| - 0.026 14.1 1.2 0.042 13.5 0.1 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IMS PF00817.15 gi|20092821|ref|NP_618896.1| - 9.1e-40 135.8 0.0 1.5e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|20092821|ref|NP_618896.1| - 5.2e-17 61.9 0.7 8.2e-17 61.3 0.5 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|20092821|ref|NP_618896.1| - 1.6e-10 40.3 0.0 6.2e-10 38.5 0.0 2.1 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|20092821|ref|NP_618896.1| - 0.001 19.1 0.0 0.0028 17.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|20092821|ref|NP_618896.1| - 0.0012 18.3 0.0 0.0027 17.2 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|20092821|ref|NP_618896.1| - 0.0025 17.6 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_gyraseB PF00204.20 gi|20092821|ref|NP_618896.1| - 0.085 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 DNA gyrase B Inhibitor_I42 PF09394.5 gi|20092822|ref|NP_618897.1| - 8.2e-18 64.5 0.0 9.3e-18 64.3 0.0 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DUF1206 PF06724.6 gi|20092823|ref|NP_618898.1| - 1 9.1 5.1 0.89 9.3 0.3 2.3 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) DDE_Tnp_1_2 PF13586.1 gi|20092824|ref|NP_618899.1| - 2.5e-10 40.4 1.4 2.7e-10 40.2 1.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Elongin_A PF06881.6 gi|20092824|ref|NP_618899.1| - 0.015 15.6 1.6 0.016 15.5 1.1 1.0 1 0 0 1 1 1 0 RNA polymerase II transcription factor SIII (Elongin) subunit A DDE_Tnp_1 PF01609.16 gi|20092824|ref|NP_618899.1| - 0.064 12.7 3.1 0.065 12.7 2.2 1.1 1 0 0 1 1 1 0 Transposase DDE domain DUF1153 PF06627.6 gi|20092824|ref|NP_618899.1| - 0.1 12.5 0.1 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1153) UPF0228 PF05727.6 gi|20092825|ref|NP_618900.1| - 3.6e-55 185.1 6.0 3.6e-55 185.1 4.1 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0228) Lactonase PF10282.4 gi|20092826|ref|NP_618901.1| - 4.6e-16 58.8 6.7 2.7e-05 23.4 0.2 3.3 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller NHL PF01436.16 gi|20092826|ref|NP_618901.1| - 4.4e-09 35.8 14.4 0.03 14.3 0.3 7.0 7 0 0 7 7 7 3 NHL repeat SGL PF08450.7 gi|20092826|ref|NP_618901.1| - 2e-07 30.6 7.0 0.043 13.1 0.0 4.1 1 1 3 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region PD40 PF07676.7 gi|20092826|ref|NP_618901.1| - 3.1e-05 23.5 0.4 5.2 6.8 0.0 4.8 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Kelch_6 PF13964.1 gi|20092826|ref|NP_618901.1| - 7.1e-05 22.8 11.0 3.5 7.9 0.1 6.1 5 2 2 7 7 7 1 Kelch motif Cytochrom_D1 PF02239.11 gi|20092826|ref|NP_618901.1| - 7.2e-05 21.2 8.0 0.019 13.2 0.1 3.2 1 1 2 3 3 3 3 Cytochrome D1 heme domain SBP56 PF05694.6 gi|20092826|ref|NP_618901.1| - 0.00066 18.2 0.1 1.8 6.9 0.0 4.1 2 1 2 4 4 4 1 56kDa selenium binding protein (SBP56) CPSase_L_chain PF00289.17 gi|20092826|ref|NP_618901.1| - 0.025 14.7 0.4 1.6 8.8 0.1 2.7 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF1513 PF07433.6 gi|20092826|ref|NP_618901.1| - 0.027 13.3 1.6 0.85 8.4 0.1 2.9 1 1 3 4 4 4 0 Protein of unknown function (DUF1513) DUF4340 PF14238.1 gi|20092826|ref|NP_618901.1| - 0.3 10.7 5.8 1.6 8.3 0.3 3.4 2 2 0 2 2 2 0 Domain of unknown function (DUF4340) Me-amine-dh_H PF06433.6 gi|20092826|ref|NP_618901.1| - 0.61 8.6 10.7 0.89 8.1 0.8 3.4 1 1 1 3 3 3 0 Methylamine dehydrogenase heavy chain (MADH) Acyl-CoA_dh_M PF02770.14 gi|20092826|ref|NP_618901.1| - 8 6.0 13.4 9.9 5.7 0.5 4.7 3 1 1 4 4 4 0 Acyl-CoA dehydrogenase, middle domain LVIVD PF08309.6 gi|20092827|ref|NP_618902.1| - 8e-263 847.3 120.7 3.4e-22 77.1 1.5 15.2 13 2 2 15 15 15 15 LVIVD repeat Beta_propel PF09826.4 gi|20092827|ref|NP_618902.1| - 5e-17 61.4 10.5 0.0079 14.5 0.0 9.8 1 1 7 9 9 9 8 Beta propeller domain PKD PF00801.15 gi|20092827|ref|NP_618902.1| - 6.2e-14 51.5 3.9 1.6e-13 50.1 2.7 1.7 1 0 0 1 1 1 1 PKD domain PQQ_2 PF13360.1 gi|20092827|ref|NP_618902.1| - 5.5e-08 32.5 9.6 0.66 9.3 0.0 6.8 2 1 4 6 6 6 3 PQQ-like domain PQQ_3 PF13570.1 gi|20092827|ref|NP_618902.1| - 2.3e-06 27.6 67.5 0.27 11.5 0.6 14.0 15 0 0 15 15 15 5 PQQ-like domain SBP56 PF05694.6 gi|20092827|ref|NP_618902.1| - 4.7e-05 22.0 2.8 1.6 7.1 0.0 5.4 4 3 3 7 7 7 2 56kDa selenium binding protein (SBP56) Rhamnogal_lyase PF06045.6 gi|20092827|ref|NP_618902.1| - 0.00055 19.2 2.7 1.7 7.8 0.0 6.0 3 3 3 7 7 7 1 Rhamnogalacturonate lyase family DUF4263 PF14082.1 gi|20092827|ref|NP_618902.1| - 0.0022 17.9 0.0 17 5.3 0.0 6.0 3 3 5 8 8 8 0 Domain of unknown function (DUF4263) CPSF_A PF03178.10 gi|20092827|ref|NP_618902.1| - 0.025 13.6 0.5 8.2 5.4 0.0 3.9 4 2 2 6 6 6 0 CPSF A subunit region Pox_VP8_L4R PF04498.7 gi|20092827|ref|NP_618902.1| - 3.6 6.8 6.5 54 2.9 0.1 4.6 5 3 3 8 8 8 0 Poxvirus nucleic acid binding protein VP8/L4R Gemini_AL2 PF01440.11 gi|20092828|ref|NP_618903.1| - 0.46 10.5 2.4 0.57 10.2 0.2 2.1 2 0 0 2 2 2 0 Geminivirus AL2 protein ABC_tran PF00005.22 gi|20092829|ref|NP_618904.1| - 1.7e-30 106.1 0.1 2.4e-30 105.6 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20092829|ref|NP_618904.1| - 8.7e-18 65.2 1.9 9.8e-13 48.7 0.0 2.5 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|20092829|ref|NP_618904.1| - 0.00025 20.2 0.1 0.055 12.5 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain STAS PF01740.16 gi|20092829|ref|NP_618904.1| - 0.044 13.1 0.1 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 STAS domain AAA_10 PF12846.2 gi|20092829|ref|NP_618904.1| - 0.051 12.9 0.1 7.7 5.8 0.3 2.4 1 1 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|20092829|ref|NP_618904.1| - 0.084 13.0 0.6 1 9.4 0.4 2.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|20092829|ref|NP_618904.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|20092829|ref|NP_618904.1| - 0.25 11.6 3.7 0.61 10.3 2.6 2.1 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|20092830|ref|NP_618905.1| - 3.3e-16 58.9 22.0 4.2e-16 58.6 15.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20092830|ref|NP_618905.1| - 1.6e-12 47.1 40.1 2.1e-12 46.7 27.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20092830|ref|NP_618905.1| - 3.9e-05 22.8 41.7 3.9e-05 22.8 28.9 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20092830|ref|NP_618905.1| - 0.029 13.6 43.3 0.31 10.3 30.1 2.4 1 1 0 1 1 1 0 ABC-2 family transporter protein EIIBC-GUT_C PF07663.6 gi|20092831|ref|NP_618906.1| - 0.14 12.3 1.3 0.3 11.2 0.9 1.8 1 1 0 1 1 1 0 Sorbitol phosphotransferase enzyme II C-terminus zf-DHHC PF01529.15 gi|20092831|ref|NP_618906.1| - 0.74 9.1 3.4 1.3 8.3 2.4 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2231 PF09990.4 gi|20092831|ref|NP_618906.1| - 1.7 9.0 7.0 6.2 7.2 0.3 2.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) Cas_Cas4 PF01930.12 gi|20092832|ref|NP_618907.1| - 2.5e-09 37.2 0.1 1.6e-07 31.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|20092832|ref|NP_618907.1| - 0.26 10.6 0.9 5 6.4 0.1 2.4 2 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily HTH_3 PF01381.17 gi|20092833|ref|NP_618908.1| - 4.6e-08 32.7 0.0 1.6e-07 31.0 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|20092833|ref|NP_618908.1| - 1.6e-07 31.2 0.0 5.2e-07 29.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|20092833|ref|NP_618908.1| - 0.0032 17.6 0.0 0.0068 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain NUMOD1 PF07453.8 gi|20092833|ref|NP_618908.1| - 0.024 14.4 0.9 0.13 12.1 0.0 2.3 2 0 0 2 2 2 0 NUMOD1 domain ACP_syn_III_C PF08541.5 gi|20092834|ref|NP_618909.1| - 7.9e-11 41.8 0.0 2e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|20092834|ref|NP_618909.1| - 6.6e-06 25.7 0.0 0.00029 20.4 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|20092834|ref|NP_618909.1| - 7.4e-05 22.3 0.1 0.0001 21.9 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.5 gi|20092834|ref|NP_618909.1| - 0.0072 15.9 2.5 0.0072 15.9 1.7 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|20092834|ref|NP_618909.1| - 0.027 13.4 0.5 0.04 12.8 0.3 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|20092835|ref|NP_618910.1| - 1.5e-12 46.9 1.8 8.6e-12 44.5 1.2 2.3 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|20092835|ref|NP_618910.1| - 2e-11 43.4 2.0 1.7e-10 40.3 0.3 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|20092835|ref|NP_618910.1| - 1.4e-05 24.7 1.2 3.2e-05 23.5 0.8 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|20092835|ref|NP_618910.1| - 0.023 14.5 4.8 0.05 13.4 0.0 3.2 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|20092835|ref|NP_618910.1| - 0.6 9.8 6.7 0.22 11.1 0.9 2.5 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|20092836|ref|NP_618911.1| - 3.6e-19 68.7 0.1 4.6e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|20092836|ref|NP_618911.1| - 6.8e-11 41.7 1.0 1.1e-10 41.0 0.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|20092836|ref|NP_618911.1| - 0.032 14.0 1.2 0.05 13.4 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|20092836|ref|NP_618911.1| - 0.076 12.7 1.5 0.15 11.7 1.0 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Laminin_EGF PF00053.19 gi|20092836|ref|NP_618911.1| - 0.18 11.7 2.1 0.31 11.0 1.5 1.4 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) CYTH PF01928.16 gi|20092837|ref|NP_618912.1| - 2.8e-46 157.5 1.3 3.1e-46 157.3 0.9 1.0 1 0 0 1 1 1 1 CYTH domain DUF4208 PF13907.1 gi|20092837|ref|NP_618912.1| - 0.12 12.5 0.0 0.37 11.0 0.0 1.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4208) PRE_C2HC PF07530.6 gi|20092837|ref|NP_618912.1| - 0.12 12.2 0.0 12 5.9 0.1 2.3 2 0 0 2 2 2 0 Associated with zinc fingers YoaP PF14268.1 gi|20092838|ref|NP_618913.1| - 4.5e-15 54.5 0.0 8.4e-15 53.7 0.0 1.5 1 0 0 1 1 1 1 YoaP-like Acetyltransf_1 PF00583.19 gi|20092838|ref|NP_618913.1| - 2.9e-06 27.2 0.0 5.9e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|20092838|ref|NP_618913.1| - 0.00012 21.8 0.0 0.0004 20.2 0.0 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.1 gi|20092838|ref|NP_618913.1| - 0.049 13.8 0.1 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF520 PF04461.8 gi|20092838|ref|NP_618913.1| - 0.12 12.2 0.1 0.21 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF520) tRNA-synt_1g PF09334.6 gi|20092839|ref|NP_618914.1| - 5.2e-145 483.0 0.0 6.4e-145 482.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|20092839|ref|NP_618914.1| - 1.1e-26 92.4 0.2 3.5e-26 90.8 0.1 1.9 1 0 0 1 1 1 1 Putative tRNA binding domain Anticodon_1 PF08264.8 gi|20092839|ref|NP_618914.1| - 9.2e-21 74.1 0.2 1.5e-20 73.5 0.1 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1 PF00133.17 gi|20092839|ref|NP_618914.1| - 1.6e-20 72.6 0.0 7.3e-11 40.7 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|20092839|ref|NP_618914.1| - 4.5e-16 58.8 0.0 2.9e-10 39.7 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|20092839|ref|NP_618914.1| - 0.0015 17.3 0.0 0.027 13.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.2 gi|20092839|ref|NP_618914.1| - 0.29 11.0 9.6 1.5 8.6 6.6 2.1 1 1 0 1 1 1 0 Double zinc ribbon Peptidase_S49 PF01343.13 gi|20092840|ref|NP_618915.1| - 5.5e-46 156.1 0.2 8.5e-46 155.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|20092840|ref|NP_618915.1| - 4.4e-05 23.2 1.6 0.0014 18.2 0.3 2.2 2 0 0 2 2 2 1 Clp protease Zip PF02535.17 gi|20092840|ref|NP_618915.1| - 0.0093 15.0 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 1 ZIP Zinc transporter Peptidase_S8 PF00082.17 gi|20092840|ref|NP_618915.1| - 0.018 14.2 1.1 0.027 13.6 0.6 1.4 1 1 0 1 1 1 0 Subtilase family tRNA-synt_2b PF00587.20 gi|20092841|ref|NP_618916.1| - 2.6e-37 128.0 0.0 4e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|20092841|ref|NP_618916.1| - 2.5e-29 101.4 4.2 4.5e-29 100.6 2.9 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Med4 PF10018.4 gi|20092841|ref|NP_618916.1| - 0.042 13.2 0.1 0.075 12.4 0.0 1.3 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 KLRAQ PF10205.4 gi|20092841|ref|NP_618916.1| - 0.062 13.3 0.4 0.12 12.4 0.3 1.4 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein MIP-T3 PF10243.4 gi|20092841|ref|NP_618916.1| - 0.063 11.7 2.6 0.084 11.3 1.8 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 DUF948 PF06103.6 gi|20092841|ref|NP_618916.1| - 0.08 12.8 1.3 0.16 11.8 0.9 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.9 gi|20092841|ref|NP_618916.1| - 0.086 12.1 2.4 0.32 10.2 1.7 1.8 1 1 0 1 1 1 0 Laminin Domain I Cauli_AT PF03233.8 gi|20092841|ref|NP_618916.1| - 0.12 12.0 3.2 0.19 11.4 2.2 1.3 1 0 0 1 1 1 0 Aphid transmission protein Glyco_hydro_15 PF00723.16 gi|20092843|ref|NP_618918.1| - 2.2e-10 39.6 0.1 1.1e-05 24.1 0.1 3.7 2 1 2 4 4 4 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|20092843|ref|NP_618918.1| - 3.3e-05 22.7 0.2 7.2e-05 21.6 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Prenyltrans_2 PF13249.1 gi|20092843|ref|NP_618918.1| - 0.00077 19.8 0.6 0.22 11.9 0.1 3.2 2 1 1 3 3 3 2 Prenyltransferase-like V4R PF02830.13 gi|20092844|ref|NP_618919.1| - 2e-19 69.1 0.1 4.3e-19 68.1 0.1 1.6 1 0 0 1 1 1 1 V4R domain Glyco_hydro_57 PF03065.10 gi|20092845|ref|NP_618920.1| - 2.6e-80 270.0 0.1 1.5e-79 267.5 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|20092845|ref|NP_618920.1| - 0.00023 20.7 0.0 0.00038 20.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|20092846|ref|NP_618921.1| - 8.8e-53 179.4 0.0 2.1e-51 174.9 0.0 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 AIRS_C PF02769.17 gi|20092848|ref|NP_618923.1| - 4.2e-46 156.7 5.1 1.3e-28 99.8 0.2 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|20092848|ref|NP_618923.1| - 1.7e-43 146.7 3.3 1.2e-25 89.5 0.1 3.8 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain rve PF00665.21 gi|20092850|ref|NP_618925.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20092850|ref|NP_618925.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20092850|ref|NP_618925.1| - 6.8e-05 22.9 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20092850|ref|NP_618925.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20092850|ref|NP_618925.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20092850|ref|NP_618925.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal TrmB PF01978.14 gi|20092851|ref|NP_618926.1| - 5.3e-06 26.0 0.4 7.1e-06 25.6 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|20092851|ref|NP_618926.1| - 9.2e-06 25.3 0.8 1.1e-05 25.1 0.5 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|20092851|ref|NP_618926.1| - 2.3e-05 24.6 0.1 2.7e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|20092851|ref|NP_618926.1| - 3.8e-05 23.2 0.2 4.8e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|20092851|ref|NP_618926.1| - 0.00016 21.6 0.2 0.00021 21.2 0.1 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|20092851|ref|NP_618926.1| - 0.00026 20.7 0.0 0.00035 20.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|20092851|ref|NP_618926.1| - 0.00086 19.1 0.9 0.0012 18.7 0.3 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|20092851|ref|NP_618926.1| - 0.0013 18.2 0.4 0.0013 18.1 0.3 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|20092851|ref|NP_618926.1| - 0.0026 17.0 0.3 0.0036 16.6 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4364 PF14277.1 gi|20092851|ref|NP_618926.1| - 0.0058 16.2 0.3 0.0092 15.6 0.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_DeoR PF08220.7 gi|20092851|ref|NP_618926.1| - 0.019 14.4 0.1 0.029 13.8 0.1 1.4 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4423 PF14394.1 gi|20092851|ref|NP_618926.1| - 0.025 14.1 0.5 0.027 13.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|20092851|ref|NP_618926.1| - 0.026 14.4 0.2 0.033 14.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|20092851|ref|NP_618926.1| - 0.028 14.4 0.7 0.032 14.3 0.5 1.2 1 0 0 1 1 1 0 Penicillinase repressor Phage_rep_org_N PF09681.5 gi|20092851|ref|NP_618926.1| - 0.041 13.4 0.1 0.046 13.3 0.1 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DDE_Tnp_2 PF04693.7 gi|20092851|ref|NP_618926.1| - 0.053 12.5 0.1 0.057 12.4 0.1 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DUF3895 PF13034.1 gi|20092851|ref|NP_618926.1| - 0.061 12.8 0.1 0.12 11.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3895) HemN_C PF06969.11 gi|20092851|ref|NP_618926.1| - 0.072 13.1 0.0 0.094 12.7 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_5 PF01022.15 gi|20092851|ref|NP_618926.1| - 0.084 12.5 0.2 0.11 12.1 0.2 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Syntaxin-6_N PF09177.6 gi|20092851|ref|NP_618926.1| - 0.093 13.1 0.1 0.12 12.8 0.1 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal SUI1 PF01253.17 gi|20092852|ref|NP_618927.1| - 6.7e-24 83.5 0.3 7.9e-24 83.2 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Sigma70_r4 PF04545.11 gi|20092853|ref|NP_618928.1| - 0.00043 19.5 0.0 0.001 18.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|20092853|ref|NP_618928.1| - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|20092853|ref|NP_618928.1| - 0.0027 17.1 0.0 0.0052 16.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|20092853|ref|NP_618928.1| - 0.015 15.0 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|20092853|ref|NP_618928.1| - 0.019 14.6 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_19 PF12844.2 gi|20092853|ref|NP_618928.1| - 0.02 14.9 0.0 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|20092853|ref|NP_618928.1| - 0.022 14.1 0.0 0.045 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20092853|ref|NP_618928.1| - 0.032 13.8 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family zf-RanBP PF00641.13 gi|20092853|ref|NP_618928.1| - 0.064 12.3 3.6 0.1 11.7 0.0 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Phage_NinH PF06322.6 gi|20092853|ref|NP_618928.1| - 0.074 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_26 PF13443.1 gi|20092853|ref|NP_618928.1| - 0.091 12.9 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|20092853|ref|NP_618928.1| - 0.1 12.8 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF650 PF04894.7 gi|20092854|ref|NP_618929.1| - 5.5e-102 340.8 0.0 6.8e-102 340.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|20092854|ref|NP_618929.1| - 2.2e-39 133.4 0.0 3.5e-39 132.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF4096 PF13340.1 gi|20092855|ref|NP_618930.1| - 1.6e-27 95.1 0.4 4.1e-27 93.8 0.2 1.7 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.1 gi|20092855|ref|NP_618930.1| - 2.1e-15 56.6 1.2 2.1e-15 56.6 0.9 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20092855|ref|NP_618930.1| - 1.2e-11 44.5 5.3 4.7e-11 42.6 3.7 1.8 1 1 0 1 1 1 1 Transposase DDE domain ATS PF15445.1 gi|20092855|ref|NP_618930.1| - 0.22 10.5 1.0 0.32 10.0 0.7 1.1 1 0 0 1 1 1 0 acidic terminal segments, variant surface antigen of PfEMP1 SAICAR_synt PF01259.13 gi|20092856|ref|NP_618931.1| - 3.5e-58 196.6 0.4 4.1e-58 196.4 0.3 1.0 1 0 0 1 1 1 1 SAICAR synthetase AAA PF00004.24 gi|20092857|ref|NP_618932.1| - 3.3e-38 130.8 0.1 2.1e-37 128.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|20092857|ref|NP_618932.1| - 3.4e-08 34.3 3.1 2.9e-07 31.3 0.0 3.4 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|20092857|ref|NP_618932.1| - 3.8e-06 26.6 0.2 2e-05 24.3 0.0 2.4 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|20092857|ref|NP_618932.1| - 5e-06 26.8 1.0 5.7e-05 23.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092857|ref|NP_618932.1| - 9.8e-05 22.5 1.4 0.0065 16.6 0.1 3.6 2 2 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|20092857|ref|NP_618932.1| - 9.8e-05 22.4 3.2 0.0056 16.6 0.0 3.2 2 1 2 4 4 4 1 AAA ATPase domain AAA_33 PF13671.1 gi|20092857|ref|NP_618932.1| - 0.0001 22.2 0.0 0.00022 21.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|20092857|ref|NP_618932.1| - 0.00018 20.6 0.1 0.00053 19.1 0.1 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|20092857|ref|NP_618932.1| - 0.00028 20.8 2.6 0.00052 19.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|20092857|ref|NP_618932.1| - 0.00047 19.6 0.6 0.047 13.0 0.0 2.6 2 1 1 3 3 3 1 AAA domain DUF815 PF05673.8 gi|20092857|ref|NP_618932.1| - 0.00092 18.2 0.0 0.0023 16.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|20092857|ref|NP_618932.1| - 0.001 19.0 0.1 0.0038 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|20092857|ref|NP_618932.1| - 0.0011 17.7 0.8 0.0034 16.1 0.0 2.2 3 0 0 3 3 3 1 TIP49 C-terminus AAA_14 PF13173.1 gi|20092857|ref|NP_618932.1| - 0.0018 18.1 0.1 0.0071 16.2 0.0 2.1 2 2 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|20092857|ref|NP_618932.1| - 0.0023 17.8 0.0 0.011 15.6 0.0 2.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|20092857|ref|NP_618932.1| - 0.0031 16.7 0.0 0.0092 15.1 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SKI PF01202.17 gi|20092857|ref|NP_618932.1| - 0.0037 17.1 0.0 0.012 15.5 0.0 1.9 1 0 0 1 1 1 1 Shikimate kinase ResIII PF04851.10 gi|20092857|ref|NP_618932.1| - 0.0066 16.3 0.1 0.019 14.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|20092857|ref|NP_618932.1| - 0.0084 15.7 0.2 0.04 13.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|20092857|ref|NP_618932.1| - 0.0086 15.5 0.0 0.025 13.9 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|20092857|ref|NP_618932.1| - 0.012 15.2 0.1 0.049 13.3 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|20092857|ref|NP_618932.1| - 0.025 13.6 0.0 0.15 11.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.1 gi|20092857|ref|NP_618932.1| - 0.043 13.4 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|20092857|ref|NP_618932.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain CPT PF07931.7 gi|20092857|ref|NP_618932.1| - 0.065 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein RNA_helicase PF00910.17 gi|20092857|ref|NP_618932.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|20092857|ref|NP_618932.1| - 0.12 11.8 0.0 0.36 10.2 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|20092857|ref|NP_618932.1| - 0.12 12.6 0.2 0.4 10.9 0.0 2.2 2 1 0 2 2 2 0 ABC transporter AAA_23 PF13476.1 gi|20092857|ref|NP_618932.1| - 0.14 12.5 5.8 5.3 7.3 0.0 3.1 2 2 1 3 3 3 0 AAA domain Herpes_UL31 PF02718.9 gi|20092857|ref|NP_618932.1| - 0.22 10.1 0.6 0.36 9.4 0.4 1.3 1 0 0 1 1 1 0 Herpesvirus UL31-like protein Lactamase_B_2 PF12706.2 gi|20092858|ref|NP_618933.1| - 4.6e-27 94.8 0.2 5.5e-27 94.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|20092858|ref|NP_618933.1| - 3e-22 79.2 0.4 4.5e-22 78.6 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|20092858|ref|NP_618933.1| - 1.9e-10 40.7 0.1 2.7e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FAD_binding_7 PF03441.9 gi|20092859|ref|NP_618934.1| - 4e-45 154.1 0.6 5.2e-44 150.5 0.4 2.0 1 1 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|20092859|ref|NP_618934.1| - 3.9e-32 111.2 0.0 1.4e-31 109.4 0.0 1.8 2 0 0 2 2 2 1 DNA photolyase DUF378 PF04070.7 gi|20092860|ref|NP_618935.1| - 1.4e-24 85.4 7.7 1.7e-24 85.2 5.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF751 PF05421.6 gi|20092860|ref|NP_618935.1| - 0.034 14.4 4.3 2.5 8.4 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF751) PMT_2 PF13231.1 gi|20092860|ref|NP_618935.1| - 0.084 12.7 2.6 0.14 12.0 1.9 1.5 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2304 PF10066.4 gi|20092860|ref|NP_618935.1| - 0.82 9.5 4.0 1.8 8.4 2.9 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) PrgI PF12666.2 gi|20092860|ref|NP_618935.1| - 2.5 8.3 4.4 8.7 6.5 0.7 2.0 1 1 1 2 2 2 0 PrgI family protein AhpC-TSA PF00578.16 gi|20092861|ref|NP_618936.1| - 1.6e-37 127.9 0.0 1.9e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|20092861|ref|NP_618936.1| - 1.5e-19 69.9 0.0 1.9e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.9 gi|20092861|ref|NP_618936.1| - 0.0028 17.2 0.0 0.0046 16.5 0.0 1.3 1 1 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.1 gi|20092861|ref|NP_618936.1| - 0.0046 17.0 0.0 0.0071 16.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.1 gi|20092861|ref|NP_618936.1| - 0.058 13.3 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|20092861|ref|NP_618936.1| - 0.082 12.3 0.0 0.093 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) PPC PF04151.10 gi|20092862|ref|NP_618937.1| - 0.005 17.7 0.3 0.39 11.7 0.1 2.4 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain DUF4131 PF13567.1 gi|20092862|ref|NP_618937.1| - 6 6.2 20.5 6 6.2 2.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Pyr_excise PF03013.9 gi|20092863|ref|NP_618938.1| - 1.3e-10 41.1 0.6 2.2e-10 40.4 0.4 1.5 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase TrmB PF01978.14 gi|20092864|ref|NP_618939.1| - 1.8e-05 24.3 0.1 0.15 11.7 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|20092864|ref|NP_618939.1| - 0.0025 17.9 0.0 0.033 14.2 0.0 2.1 2 0 0 2 2 2 1 Penicillinase repressor LIM PF00412.17 gi|20092864|ref|NP_618939.1| - 0.0026 17.8 0.7 0.0057 16.6 0.5 1.6 1 0 0 1 1 1 1 LIM domain HTH_32 PF13565.1 gi|20092864|ref|NP_618939.1| - 0.063 14.0 0.4 0.31 11.8 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_9 PF08221.6 gi|20092864|ref|NP_618939.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF4428 PF14471.1 gi|20092864|ref|NP_618939.1| - 0.17 11.6 1.7 0.64 9.8 1.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) TFIIS_C PF01096.13 gi|20092864|ref|NP_618939.1| - 0.19 11.4 0.0 0.19 11.4 0.0 1.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) HTH_7 PF02796.10 gi|20092864|ref|NP_618939.1| - 0.2 11.5 0.5 0.87 9.4 0.3 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase CMD PF02627.15 gi|20092865|ref|NP_618940.1| - 2e-19 69.2 0.0 2.4e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family TROVE PF05731.6 gi|20092865|ref|NP_618940.1| - 0.15 10.8 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 TROVE domain AMP-binding PF00501.23 gi|20092867|ref|NP_618942.1| - 9.8e-20 70.3 0.0 1.3e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.1 gi|20092867|ref|NP_618942.1| - 0.11 12.1 0.0 0.36 10.5 0.0 1.8 2 1 0 2 2 2 0 SIS domain NikR_C PF08753.6 gi|20092868|ref|NP_618943.1| - 1.9e-35 120.5 2.3 2.5e-35 120.1 1.6 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|20092868|ref|NP_618943.1| - 3.1e-08 33.1 0.1 3.1e-08 33.1 0.0 2.3 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family HTH_5 PF01022.15 gi|20092869|ref|NP_618944.1| - 4.7e-16 58.1 0.9 7.3e-16 57.5 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20092869|ref|NP_618944.1| - 1.1e-13 50.8 1.2 1.5e-13 50.2 0.4 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2513 PF10711.4 gi|20092869|ref|NP_618944.1| - 0.0044 17.0 0.2 0.0099 15.9 0.0 1.7 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|20092869|ref|NP_618944.1| - 0.0088 16.0 0.1 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|20092869|ref|NP_618944.1| - 0.0099 15.5 0.6 0.024 14.2 0.1 1.9 2 1 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|20092869|ref|NP_618944.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|20092869|ref|NP_618944.1| - 0.032 14.5 0.1 0.076 13.3 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain FAM74 PF15026.1 gi|20092869|ref|NP_618944.1| - 0.036 13.7 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 FAM74 protein HTH_24 PF13412.1 gi|20092869|ref|NP_618944.1| - 0.048 13.0 1.8 0.28 10.5 0.0 2.7 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding LETM1 PF07766.8 gi|20092869|ref|NP_618944.1| - 0.063 12.3 0.1 0.07 12.1 0.1 1.1 1 0 0 1 1 1 0 LETM1-like protein UPF0104 PF03706.8 gi|20092870|ref|NP_618945.1| - 1e-37 130.0 24.8 1.6e-37 129.4 17.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|20092870|ref|NP_618945.1| - 0.049 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF2132 PF09905.4 gi|20092870|ref|NP_618945.1| - 0.11 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2132) DUF2298 PF10060.4 gi|20092871|ref|NP_618946.1| - 2e-149 498.4 43.8 2.6e-149 498.1 30.4 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Aldedh PF00171.17 gi|20092872|ref|NP_618947.1| - 5.4e-164 545.9 0.0 6.5e-164 545.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|20092872|ref|NP_618947.1| - 0.14 10.8 0.0 0.24 10.1 0.0 1.4 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) Amino_oxidase PF01593.19 gi|20092874|ref|NP_618949.1| - 8.5e-23 81.1 0.0 1.4e-22 80.4 0.0 1.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|20092874|ref|NP_618949.1| - 2.1e-12 46.8 0.2 8e-12 45.0 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|20092874|ref|NP_618949.1| - 1.6e-11 43.7 0.0 2.2e-05 23.5 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|20092874|ref|NP_618949.1| - 1.8e-08 33.7 0.2 0.00044 19.2 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|20092874|ref|NP_618949.1| - 0.0002 21.3 0.0 0.0052 16.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|20092874|ref|NP_618949.1| - 0.00023 19.7 0.1 0.5 8.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|20092874|ref|NP_618949.1| - 0.00032 19.8 0.7 0.019 14.0 0.1 2.4 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|20092874|ref|NP_618949.1| - 0.00066 20.0 0.5 0.26 11.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|20092874|ref|NP_618949.1| - 0.00099 18.1 0.0 0.23 10.3 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|20092874|ref|NP_618949.1| - 0.0047 16.6 0.1 0.044 13.5 0.0 2.4 3 0 0 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|20092874|ref|NP_618949.1| - 0.02 13.7 0.2 1.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|20092874|ref|NP_618949.1| - 0.13 11.3 0.0 0.7 8.8 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain E1-E2_ATPase PF00122.15 gi|20092875|ref|NP_618950.1| - 1.9e-74 249.5 0.1 1.9e-74 249.5 0.1 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|20092875|ref|NP_618950.1| - 9e-46 155.6 8.5 9e-46 155.6 5.9 2.7 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|20092875|ref|NP_618950.1| - 1.5e-41 143.1 0.0 4.6e-41 141.5 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|20092875|ref|NP_618950.1| - 4.2e-25 87.5 0.0 1.7e-24 85.5 0.0 2.1 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|20092875|ref|NP_618950.1| - 1.9e-22 78.4 0.1 4.7e-22 77.2 0.1 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|20092875|ref|NP_618950.1| - 1.6e-19 70.8 0.0 3.5e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20092875|ref|NP_618950.1| - 7e-06 25.8 1.9 0.0049 16.4 0.6 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase POTRA_1 PF08478.5 gi|20092875|ref|NP_618950.1| - 0.098 12.7 0.4 3 7.9 0.0 2.8 2 0 0 2 2 2 0 POTRA domain, FtsQ-type Radical_SAM PF04055.16 gi|20092875|ref|NP_618950.1| - 0.18 11.9 0.2 1 9.5 0.0 2.2 1 1 1 2 2 2 0 Radical SAM superfamily Na_H_Exchanger PF00999.16 gi|20092876|ref|NP_618951.1| - 3e-58 197.1 56.6 3.6e-58 196.9 39.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Rab5ip PF07019.7 gi|20092876|ref|NP_618951.1| - 0.12 12.4 0.0 0.12 12.4 0.0 5.0 4 2 1 5 5 5 0 Rab5-interacting protein (Rab5ip) CBS PF00571.23 gi|20092877|ref|NP_618952.1| - 9e-30 102.2 0.9 2.2e-14 52.9 0.0 2.2 2 0 0 2 2 2 2 CBS domain TetR_C PF02909.12 gi|20092877|ref|NP_618952.1| - 0.089 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Tetracyclin repressor, C-terminal all-alpha domain PMT PF02366.13 gi|20092878|ref|NP_618953.1| - 8.6e-12 44.9 12.1 8.6e-12 44.9 8.4 2.2 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.1 gi|20092878|ref|NP_618953.1| - 2.5e-11 43.7 12.0 2.5e-11 43.7 8.3 4.0 4 1 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|20092878|ref|NP_618953.1| - 0.43 9.4 29.1 1.3 7.9 19.8 1.8 1 1 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit ThiS PF02597.15 gi|20092879|ref|NP_618954.1| - 1.4e-18 67.0 0.0 1.6e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family MoeA_N PF03453.12 gi|20092880|ref|NP_618955.1| - 4.4e-45 152.9 0.2 7.2e-45 152.2 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|20092880|ref|NP_618955.1| - 3.3e-28 97.8 0.0 5.3e-28 97.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|20092880|ref|NP_618955.1| - 3.4e-14 52.5 1.4 6.1e-14 51.7 0.0 2.2 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) MutL PF13941.1 gi|20092880|ref|NP_618955.1| - 0.12 10.6 0.0 0.22 9.8 0.0 1.3 1 0 0 1 1 1 0 MutL protein CRCB PF02537.10 gi|20092881|ref|NP_618956.1| - 3.6e-22 78.4 12.6 4.2e-22 78.2 8.7 1.0 1 0 0 1 1 1 1 CrcB-like protein FUSC_2 PF13515.1 gi|20092881|ref|NP_618956.1| - 7.1 6.5 10.5 13 5.7 7.3 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein-like CRCB PF02537.10 gi|20092882|ref|NP_618957.1| - 3.3e-26 91.4 7.2 3.7e-26 91.2 5.0 1.0 1 0 0 1 1 1 1 CrcB-like protein ATP_synt_I PF03899.10 gi|20092882|ref|NP_618957.1| - 0.11 12.6 3.9 0.18 11.9 2.7 1.3 1 0 0 1 1 1 0 ATP synthase I chain CxxCxxCC PF03692.10 gi|20092884|ref|NP_618959.1| - 9.1e-11 42.0 4.8 1.3e-10 41.5 2.6 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain RibD_C PF01872.12 gi|20092885|ref|NP_618960.1| - 6.6e-54 182.5 0.0 7.4e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF1851 PF08906.6 gi|20092885|ref|NP_618960.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1851) CBS PF00571.23 gi|20092886|ref|NP_618961.1| - 3.8e-47 157.8 12.5 3.2e-15 55.6 0.2 4.1 4 0 0 4 4 4 4 CBS domain H_kinase_N PF12282.3 gi|20092886|ref|NP_618961.1| - 0.035 13.7 1.6 2.7 7.5 0.0 2.9 2 1 1 3 3 3 0 Signal transduction histidine kinase GAF_2 PF13185.1 gi|20092886|ref|NP_618961.1| - 0.12 12.8 0.7 1.9 8.9 0.0 2.5 2 1 1 3 3 3 0 GAF domain Usp PF00582.21 gi|20092887|ref|NP_618962.1| - 6.6e-40 136.5 0.0 7.4e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|20092887|ref|NP_618962.1| - 0.11 12.9 0.1 0.18 12.2 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Amidohydro_1 PF01979.15 gi|20092888|ref|NP_618963.1| - 9.5e-20 71.4 0.1 2.3e-19 70.2 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|20092888|ref|NP_618963.1| - 2.2e-10 41.0 0.0 1.6e-09 38.2 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|20092888|ref|NP_618963.1| - 3.9e-06 26.3 0.0 9.3e-05 21.8 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.17 gi|20092888|ref|NP_618963.1| - 5.7e-06 25.4 0.0 9.9e-06 24.6 0.0 1.4 1 1 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|20092888|ref|NP_618963.1| - 0.00011 21.9 0.0 0.0002 21.1 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Peripla_BP_2 PF01497.13 gi|20092888|ref|NP_618963.1| - 0.028 13.5 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein DUF167 PF02594.11 gi|20092890|ref|NP_618965.1| - 3.1e-21 75.0 0.3 3.8e-21 74.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Phosphoprotein PF00922.12 gi|20092890|ref|NP_618965.1| - 0.02 14.1 0.4 0.031 13.5 0.2 1.3 1 1 0 1 1 1 0 Vesiculovirus phosphoprotein DUF2805 PF10985.3 gi|20092890|ref|NP_618965.1| - 0.15 12.0 0.3 0.34 10.9 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2805) Toprim_4 PF13662.1 gi|20092891|ref|NP_618966.1| - 3.5e-06 26.9 0.0 1.4e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|20092891|ref|NP_618966.1| - 9.7e-06 25.4 0.1 5.3e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|20092891|ref|NP_618966.1| - 0.0076 16.5 0.0 0.013 15.7 0.0 1.5 1 1 0 1 1 1 1 Toprim-like DUF3529 PF12046.3 gi|20092891|ref|NP_618966.1| - 0.077 12.0 0.1 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) DUF356 PF04009.7 gi|20092892|ref|NP_618967.1| - 6.3e-45 151.6 0.1 7.8e-45 151.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Abhydrolase_7 PF12715.2 gi|20092892|ref|NP_618967.1| - 0.0055 15.6 0.0 0.007 15.3 0.0 1.0 1 0 0 1 1 1 1 Abhydrolase family Aldedh PF00171.17 gi|20092893|ref|NP_618968.1| - 3.5e-17 61.9 0.7 7.3e-13 47.6 0.1 2.3 2 1 0 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.23 gi|20092894|ref|NP_618969.1| - 3.3e-35 121.7 0.1 4.2e-35 121.4 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.15 gi|20092894|ref|NP_618969.1| - 9.5e-20 70.1 0.4 2.3e-19 68.8 0.2 1.7 1 0 0 1 1 1 1 PUA domain P5CR_dimer PF14748.1 gi|20092895|ref|NP_618970.1| - 8.9e-42 141.4 1.5 8.9e-42 141.4 1.0 1.9 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|20092895|ref|NP_618970.1| - 1.4e-20 73.4 2.0 4.8e-20 71.7 0.4 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|20092895|ref|NP_618970.1| - 7.2e-07 29.0 4.8 1.6e-05 24.6 3.4 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|20092895|ref|NP_618970.1| - 3.6e-06 26.9 0.6 7.8e-06 25.8 0.4 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|20092895|ref|NP_618970.1| - 0.012 14.5 0.3 0.022 13.6 0.2 1.6 1 1 0 1 1 1 0 Prephenate dehydrogenase ApbA PF02558.11 gi|20092895|ref|NP_618970.1| - 0.18 11.2 1.7 0.46 9.9 1.2 1.8 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AhpC-TSA PF00578.16 gi|20092896|ref|NP_618971.1| - 8.2e-35 119.1 0.0 1.2e-34 118.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|20092896|ref|NP_618971.1| - 6.1e-16 57.7 0.5 1.5e-15 56.5 0.2 1.8 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|20092896|ref|NP_618971.1| - 2.2e-14 53.2 0.0 3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF4511 PF14974.1 gi|20092896|ref|NP_618971.1| - 0.01 15.5 0.1 0.02 14.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4511) DUF1848 PF08902.6 gi|20092896|ref|NP_618971.1| - 0.067 12.7 0.1 0.13 11.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1848) DUF523 PF04463.7 gi|20092897|ref|NP_618972.1| - 1e-40 138.7 0.0 1.6e-40 138.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|20092897|ref|NP_618972.1| - 1.5e-37 128.0 0.1 2.1e-37 127.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Herpes_pp85 PF04637.7 gi|20092897|ref|NP_618972.1| - 0.12 10.6 0.1 0.16 10.2 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) DUF553 PF04473.7 gi|20092898|ref|NP_618973.1| - 0.064 12.5 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Transglutaminase-like domain PspC PF04024.7 gi|20092899|ref|NP_618974.1| - 8.9e-27 92.3 0.4 9.6e-27 92.2 0.2 1.0 1 0 0 1 1 1 1 PspC domain DDE_Tnp_IS1 PF03400.8 gi|20092900|ref|NP_618975.1| - 1.2e-13 51.3 0.3 1.3e-13 51.1 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20092901|ref|NP_618976.1| - 1.5e-06 27.6 0.0 3e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20092901|ref|NP_618976.1| - 8e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20092901|ref|NP_618976.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20092901|ref|NP_618976.1| - 0.00066 19.8 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20092901|ref|NP_618976.1| - 0.004 16.6 0.0 0.022 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092901|ref|NP_618976.1| - 0.0058 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20092901|ref|NP_618976.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20092901|ref|NP_618976.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20092901|ref|NP_618976.1| - 0.019 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20092901|ref|NP_618976.1| - 0.051 13.4 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20092901|ref|NP_618976.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20092901|ref|NP_618976.1| - 0.079 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20092901|ref|NP_618976.1| - 0.13 12.2 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20092901|ref|NP_618976.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|20092901|ref|NP_618976.1| - 5.1 6.8 7.5 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|20092901|ref|NP_618976.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) SRP54 PF00448.17 gi|20092902|ref|NP_618977.1| - 1.5e-71 239.9 0.2 2.4e-71 239.2 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|20092902|ref|NP_618977.1| - 6.9e-10 38.8 0.6 6.9e-10 38.8 0.4 2.9 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|20092902|ref|NP_618977.1| - 5.3e-05 22.9 0.9 0.00018 21.2 0.5 2.0 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|20092902|ref|NP_618977.1| - 0.00017 20.7 0.1 0.00037 19.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|20092902|ref|NP_618977.1| - 0.00034 20.2 0.1 0.00064 19.4 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|20092902|ref|NP_618977.1| - 0.00044 19.8 0.2 0.0011 18.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|20092902|ref|NP_618977.1| - 0.002 18.1 1.0 0.0063 16.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|20092902|ref|NP_618977.1| - 0.0031 16.9 1.8 0.032 13.5 0.0 2.8 3 0 0 3 3 3 1 Thymidylate kinase cobW PF02492.14 gi|20092902|ref|NP_618977.1| - 0.0037 16.7 0.3 0.0087 15.5 0.2 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|20092902|ref|NP_618977.1| - 0.0058 16.7 0.1 0.018 15.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|20092902|ref|NP_618977.1| - 0.0063 16.7 0.1 0.031 14.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|20092902|ref|NP_618977.1| - 0.01 16.1 0.6 0.54 10.5 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_10 PF12846.2 gi|20092902|ref|NP_618977.1| - 0.024 14.0 0.1 0.063 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|20092902|ref|NP_618977.1| - 0.035 14.0 1.5 0.064 13.2 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|20092902|ref|NP_618977.1| - 0.036 13.9 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|20092902|ref|NP_618977.1| - 0.047 13.4 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF2075 PF09848.4 gi|20092902|ref|NP_618977.1| - 0.068 12.1 0.1 0.14 11.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.18 gi|20092902|ref|NP_618977.1| - 0.075 13.0 0.2 0.3 11.0 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.4 gi|20092902|ref|NP_618977.1| - 0.083 11.4 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Arf PF00025.16 gi|20092902|ref|NP_618977.1| - 0.084 12.1 0.0 0.21 10.7 0.0 1.7 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_17 PF13207.1 gi|20092902|ref|NP_618977.1| - 0.099 13.4 0.2 0.44 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|20092902|ref|NP_618977.1| - 1.9 8.1 8.4 0.099 12.3 0.2 2.8 2 2 0 2 2 2 0 Archaeal ATPase Prefoldin PF02996.12 gi|20092903|ref|NP_618978.1| - 1.1e-32 112.2 2.5 1.2e-32 112.0 1.4 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|20092903|ref|NP_618978.1| - 2.7e-07 30.3 7.0 8.8e-05 22.2 0.8 2.1 2 0 0 2 2 2 2 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|20092903|ref|NP_618978.1| - 0.0053 16.6 8.7 0.083 12.7 1.7 2.1 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4515 PF14988.1 gi|20092903|ref|NP_618978.1| - 0.006 16.2 6.9 0.22 11.1 1.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4515) CHDCT2 PF08074.6 gi|20092903|ref|NP_618978.1| - 0.0066 16.2 1.1 0.015 15.0 0.1 1.7 1 1 1 2 2 2 1 CHDCT2 (NUC038) domain DUF4140 PF13600.1 gi|20092903|ref|NP_618978.1| - 0.0075 16.7 8.4 0.24 11.8 0.4 2.2 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) GAS PF13851.1 gi|20092903|ref|NP_618978.1| - 0.0096 15.1 6.2 0.42 9.7 1.1 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|20092903|ref|NP_618978.1| - 0.013 15.1 6.0 0.63 9.5 0.1 2.0 2 0 0 2 2 2 0 IncA protein DUF4200 PF13863.1 gi|20092903|ref|NP_618978.1| - 0.014 15.3 11.0 0.16 11.9 2.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Tropomyosin_1 PF12718.2 gi|20092903|ref|NP_618978.1| - 0.015 15.1 7.0 0.15 11.9 0.9 2.1 2 0 0 2 2 2 0 Tropomyosin like DivIVA PF05103.8 gi|20092903|ref|NP_618978.1| - 0.017 15.1 6.6 0.11 12.4 0.3 2.1 2 0 0 2 2 2 0 DivIVA protein DUF1664 PF07889.7 gi|20092903|ref|NP_618978.1| - 0.017 14.9 1.2 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF2937 PF11157.3 gi|20092903|ref|NP_618978.1| - 0.018 14.3 2.1 1.2 8.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) DUF3287 PF11690.3 gi|20092903|ref|NP_618978.1| - 0.019 15.0 0.6 2.7 8.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) DegS PF05384.6 gi|20092903|ref|NP_618978.1| - 0.023 13.9 3.1 0.25 10.5 0.6 2.1 2 0 0 2 2 2 0 Sensor protein DegS DUF3450 PF11932.3 gi|20092903|ref|NP_618978.1| - 0.028 13.6 8.7 0.18 11.0 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) AAA_13 PF13166.1 gi|20092903|ref|NP_618978.1| - 0.038 12.4 5.3 0.55 8.6 0.3 2.0 2 0 0 2 2 2 0 AAA domain ADIP PF11559.3 gi|20092903|ref|NP_618978.1| - 0.038 13.8 8.5 0.21 11.4 1.0 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Rootletin PF15035.1 gi|20092903|ref|NP_618978.1| - 0.049 13.6 4.2 0.072 13.0 2.9 1.2 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Seryl_tRNA_N PF02403.17 gi|20092903|ref|NP_618978.1| - 0.051 13.5 6.4 0.49 10.4 0.4 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.6 gi|20092903|ref|NP_618978.1| - 0.052 13.4 2.6 0.4 10.5 0.2 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Sec3_C_2 PF15278.1 gi|20092903|ref|NP_618978.1| - 0.056 13.5 1.8 1.9 8.7 0.1 2.2 2 0 0 2 2 2 0 Sec3 exocyst complex subunit DUF342 PF03961.8 gi|20092903|ref|NP_618978.1| - 0.059 11.7 3.8 1.7 7.0 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF342) BLOC1_2 PF10046.4 gi|20092903|ref|NP_618978.1| - 0.076 13.1 5.4 3.1 7.9 0.4 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RmuC PF02646.11 gi|20092903|ref|NP_618978.1| - 0.077 11.8 5.4 0.88 8.3 0.1 2.0 2 0 0 2 2 2 0 RmuC family Nsp1_C PF05064.8 gi|20092903|ref|NP_618978.1| - 0.077 12.6 3.7 2.2 7.9 0.2 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region M_domain PF12938.2 gi|20092903|ref|NP_618978.1| - 0.077 12.7 1.7 0.14 11.9 0.1 1.8 2 0 0 2 2 2 0 M domain of GW182 Baculo_PEP_C PF04513.7 gi|20092903|ref|NP_618978.1| - 0.081 12.7 2.6 2 8.2 0.1 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Vps51 PF08700.6 gi|20092903|ref|NP_618978.1| - 0.086 12.6 3.6 5.3 6.9 0.2 2.7 2 0 0 2 2 2 0 Vps51/Vps67 ATG16 PF08614.6 gi|20092903|ref|NP_618978.1| - 0.089 12.6 7.0 1.9 8.2 0.9 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) RasGAP_C PF03836.10 gi|20092903|ref|NP_618978.1| - 0.097 12.3 2.0 5.1 6.7 0.1 2.1 2 0 0 2 2 2 0 RasGAP C-terminus Effector_1 PF04518.7 gi|20092903|ref|NP_618978.1| - 0.12 11.3 3.8 1.3 7.9 0.2 2.0 2 0 0 2 2 2 0 Effector from type III secretion system MCPsignal PF00015.16 gi|20092903|ref|NP_618978.1| - 0.12 11.8 8.6 0.23 10.9 6.0 1.4 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Bacillus_HBL PF05791.6 gi|20092903|ref|NP_618978.1| - 0.12 11.6 2.7 1.3 8.3 0.2 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) TBPIP PF07106.8 gi|20092903|ref|NP_618978.1| - 0.13 11.7 4.6 2 7.9 0.3 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TMF_DNA_bd PF12329.3 gi|20092903|ref|NP_618978.1| - 0.13 12.0 9.6 1.3 8.8 1.8 2.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Rab5-bind PF09311.6 gi|20092903|ref|NP_618978.1| - 0.14 12.0 8.4 0.44 10.4 0.7 2.1 1 1 1 2 2 2 0 Rabaptin-like protein Reo_sigmaC PF04582.7 gi|20092903|ref|NP_618978.1| - 0.14 11.3 0.6 8.8 5.4 0.1 2.0 2 0 0 2 2 2 0 Reovirus sigma C capsid protein Uds1 PF15456.1 gi|20092903|ref|NP_618978.1| - 0.14 12.1 3.6 0.3 11.0 2.5 1.5 1 1 0 1 1 1 0 Up-regulated During Septation DUF2458 PF10454.4 gi|20092903|ref|NP_618978.1| - 0.15 11.9 2.8 0.99 9.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2458) CDC37_N PF03234.9 gi|20092903|ref|NP_618978.1| - 0.15 12.3 1.9 0.22 11.8 1.3 1.3 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF869 PF05911.6 gi|20092903|ref|NP_618978.1| - 0.2 9.8 5.3 0.42 8.7 3.7 1.5 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF972 PF06156.8 gi|20092903|ref|NP_618978.1| - 0.21 11.9 5.6 4.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Syntaxin-6_N PF09177.6 gi|20092903|ref|NP_618978.1| - 0.22 11.9 2.9 5.1 7.5 0.2 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Laminin_II PF06009.7 gi|20092903|ref|NP_618978.1| - 0.22 11.2 3.8 3.8 7.2 0.2 2.1 2 0 0 2 2 2 0 Laminin Domain II Spc7 PF08317.6 gi|20092903|ref|NP_618978.1| - 0.24 10.0 7.9 0.64 8.6 0.7 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein bZIP_1 PF00170.16 gi|20092903|ref|NP_618978.1| - 0.24 11.3 7.0 1.3 9.0 0.1 2.4 2 0 0 2 2 2 0 bZIP transcription factor DUF1319 PF07028.6 gi|20092903|ref|NP_618978.1| - 0.24 11.5 2.3 1.7 8.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) DUF4635 PF15466.1 gi|20092903|ref|NP_618978.1| - 0.25 10.6 1.8 0.19 11.0 0.1 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4635) DUF148 PF02520.12 gi|20092903|ref|NP_618978.1| - 0.29 10.9 4.7 1.4 8.7 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF148 YlqD PF11068.3 gi|20092903|ref|NP_618978.1| - 0.33 10.9 5.3 8.8 6.3 0.0 2.2 2 0 0 2 2 2 0 YlqD protein Nup54 PF13874.1 gi|20092903|ref|NP_618978.1| - 0.37 10.4 8.2 1.5 8.4 0.4 2.3 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Mer2 PF09074.5 gi|20092903|ref|NP_618978.1| - 0.38 10.6 3.8 0.37 10.6 0.4 2.0 2 0 0 2 2 2 0 Mer2 Med30 PF11315.3 gi|20092903|ref|NP_618978.1| - 0.41 10.7 3.3 2 8.5 1.4 2.0 1 1 0 1 1 1 0 Mediator complex subunit 30 LIF_OSM PF01291.12 gi|20092903|ref|NP_618978.1| - 0.41 10.5 2.3 5.2 6.9 0.3 2.0 1 1 0 2 2 2 0 LIF / OSM family ALIX_LYPXL_bnd PF13949.1 gi|20092903|ref|NP_618978.1| - 0.47 9.3 4.9 0.84 8.5 0.3 2.0 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV DUF4618 PF15397.1 gi|20092903|ref|NP_618978.1| - 0.48 9.7 4.8 1.6 8.0 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) NTR2 PF15458.1 gi|20092903|ref|NP_618978.1| - 0.49 9.5 10.1 0.91 8.7 1.6 2.1 2 0 0 2 2 2 0 Nineteen complex-related protein 2 CENP-Q PF13094.1 gi|20092903|ref|NP_618978.1| - 0.53 10.2 8.3 0.71 9.8 2.3 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3251 PF11622.3 gi|20092903|ref|NP_618978.1| - 0.53 9.6 3.6 0.91 8.9 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) APG6 PF04111.7 gi|20092903|ref|NP_618978.1| - 0.56 9.2 8.0 1.1 8.1 1.0 2.0 2 0 0 2 2 2 0 Autophagy protein Apg6 COG2 PF06148.6 gi|20092903|ref|NP_618978.1| - 0.62 9.9 3.0 5.9 6.7 0.2 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Med4 PF10018.4 gi|20092903|ref|NP_618978.1| - 0.7 9.2 6.7 2.5 7.4 0.1 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Mnd1 PF03962.10 gi|20092903|ref|NP_618978.1| - 0.71 9.5 5.1 6.7 6.3 0.3 2.1 2 0 0 2 2 2 0 Mnd1 family APG17 PF04108.7 gi|20092903|ref|NP_618978.1| - 0.77 8.4 5.2 0.53 9.0 0.6 1.9 2 0 0 2 2 2 0 Autophagy protein Apg17 Cep57_MT_bd PF06657.8 gi|20092903|ref|NP_618978.1| - 0.9 9.5 4.1 3.9 7.5 0.1 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Laminin_I PF06008.9 gi|20092903|ref|NP_618978.1| - 0.92 8.7 9.1 2.6 7.2 0.7 2.1 2 0 0 2 2 2 0 Laminin Domain I WXG100 PF06013.7 gi|20092903|ref|NP_618978.1| - 0.95 9.5 8.2 4.8 7.2 1.3 2.4 2 0 0 2 2 2 0 Proteins of 100 residues with WXG DUF2205 PF10224.4 gi|20092903|ref|NP_618978.1| - 1.1 8.9 5.8 2.1 7.9 0.9 2.2 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) TMF_TATA_bd PF12325.3 gi|20092903|ref|NP_618978.1| - 1.1 8.9 7.9 8.6 6.1 0.2 2.5 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding ERM PF00769.14 gi|20092903|ref|NP_618978.1| - 1.3 8.5 10.3 0.69 9.3 1.7 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family HAUS6_N PF14661.1 gi|20092903|ref|NP_618978.1| - 1.3 8.3 4.7 4.1 6.6 0.5 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus TSC22 PF01166.13 gi|20092903|ref|NP_618978.1| - 1.5 8.8 4.2 0.78 9.7 0.2 2.4 2 1 0 2 2 2 0 TSC-22/dip/bun family DUF2968 PF11180.3 gi|20092903|ref|NP_618978.1| - 1.5 8.1 9.3 1.6 8.1 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Lge1 PF11488.3 gi|20092903|ref|NP_618978.1| - 1.6 8.9 5.3 3.3 7.9 0.5 2.4 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 Ax_dynein_light PF10211.4 gi|20092903|ref|NP_618978.1| - 1.7 8.4 7.7 2.9 7.7 0.5 2.2 2 0 0 2 2 2 0 Axonemal dynein light chain Viral_P18 PF04521.8 gi|20092903|ref|NP_618978.1| - 1.7 8.0 6.2 6.1 6.3 0.1 2.4 2 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Flagellin_N PF00669.15 gi|20092903|ref|NP_618978.1| - 1.8 8.3 7.2 1.9 8.3 1.0 2.1 2 0 0 2 2 2 0 Bacterial flagellin N-terminal helical region EMP24_GP25L PF01105.19 gi|20092903|ref|NP_618978.1| - 1.9 8.2 4.2 2.7 7.6 0.1 2.0 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD HAUS-augmin3 PF14932.1 gi|20092903|ref|NP_618978.1| - 1.9 7.6 8.0 2.3 7.3 0.9 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 HALZ PF02183.13 gi|20092903|ref|NP_618978.1| - 2.7 7.7 5.5 4.1 7.1 0.1 2.6 2 1 0 2 2 2 0 Homeobox associated leucine zipper SlyX PF04102.7 gi|20092903|ref|NP_618978.1| - 3 8.2 12.5 1.9 8.9 2.0 2.5 2 1 0 2 2 2 0 SlyX GrpE PF01025.14 gi|20092903|ref|NP_618978.1| - 3.1 7.3 5.9 6.8 6.2 1.3 2.1 2 0 0 2 2 2 0 GrpE DUF1843 PF08898.5 gi|20092903|ref|NP_618978.1| - 3.2 7.8 6.4 11 6.1 0.7 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) Spc24 PF08286.6 gi|20092903|ref|NP_618978.1| - 3.4 7.4 7.7 4.8 6.8 0.3 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 V_ATPase_I PF01496.14 gi|20092903|ref|NP_618978.1| - 3.6 5.3 6.1 6.4 4.5 0.7 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|20092903|ref|NP_618978.1| - 4.1 6.9 9.9 4 6.9 0.7 2.8 2 2 0 2 2 2 0 Septum formation initiator DUF607 PF04678.8 gi|20092903|ref|NP_618978.1| - 4.4 7.1 6.7 11 5.9 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF607 bZIP_Maf PF03131.12 gi|20092903|ref|NP_618978.1| - 4.4 7.6 7.3 15 5.9 0.4 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF724 PF05266.9 gi|20092903|ref|NP_618978.1| - 4.6 6.8 7.4 5.5 6.5 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF904 PF06005.7 gi|20092903|ref|NP_618978.1| - 4.7 7.5 9.8 2.5 8.4 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF904) M PF02370.11 gi|20092903|ref|NP_618978.1| - 5.9 7.5 10.9 1 9.9 0.4 3.5 3 1 1 4 4 2 0 M protein repeat DASH_Spc19 PF08287.6 gi|20092903|ref|NP_618978.1| - 7.9 6.0 8.7 13 5.4 0.2 2.9 2 2 1 3 3 3 0 Spc19 Ribosomal_L18ae PF01775.12 gi|20092904|ref|NP_618979.1| - 1.4e-11 44.3 0.5 1.5e-11 44.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain SelR PF01641.13 gi|20092904|ref|NP_618979.1| - 0.024 14.3 0.1 0.025 14.2 0.1 1.1 1 0 0 1 1 1 0 SelR domain eIF-6 PF01912.13 gi|20092905|ref|NP_618980.1| - 2e-63 213.0 0.5 2.4e-63 212.8 0.4 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|20092906|ref|NP_618981.1| - 2.1e-27 94.5 0.6 2.5e-27 94.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|20092907|ref|NP_618982.1| - 5.3e-21 73.8 11.2 6e-21 73.6 7.7 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein PGAMP PF07644.6 gi|20092907|ref|NP_618982.1| - 0.048 13.4 0.1 0.072 12.8 0.1 1.3 1 0 0 1 1 1 0 Planctomycete PGAMP Asn_synthase PF00733.16 gi|20092908|ref|NP_618983.1| - 0.00047 19.7 0.0 0.00085 18.8 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|20092908|ref|NP_618983.1| - 0.014 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|20092908|ref|NP_618983.1| - 0.037 13.4 0.0 0.086 12.1 0.0 1.6 2 0 0 2 2 2 0 ATP-binding region tRNA_Me_trans PF03054.11 gi|20092908|ref|NP_618983.1| - 0.055 12.0 0.0 0.082 11.4 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.15 gi|20092909|ref|NP_618984.1| - 8.1e-30 102.9 19.2 9.2e-30 102.7 13.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain 4HB_MCP_1 PF12729.2 gi|20092909|ref|NP_618984.1| - 0.041 13.2 1.9 0.26 10.6 0.2 2.0 1 1 1 2 2 2 0 Four helix bundle sensory module for signal transduction MCPVI PF02993.9 gi|20092909|ref|NP_618984.1| - 1.4 9.0 5.3 1.7 8.7 3.7 1.2 1 0 0 1 1 1 0 Minor capsid protein VI Caps_synth_GfcC PF06251.6 gi|20092909|ref|NP_618984.1| - 1.6 7.8 7.4 1.8 7.6 5.1 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC Ribosomal_S19e PF01090.14 gi|20092910|ref|NP_618985.1| - 2.6e-57 192.1 0.0 3e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|20092910|ref|NP_618985.1| - 0.011 15.2 0.0 4.8 6.8 0.0 2.6 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB C-terminus HTH_27 PF13463.1 gi|20092910|ref|NP_618985.1| - 0.073 13.4 0.0 0.62 10.4 0.0 2.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain Adenylsucc_synt PF00709.16 gi|20092911|ref|NP_618986.1| - 3.1e-160 533.4 0.0 3.5e-160 533.2 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase DUF131 PF01998.12 gi|20092912|ref|NP_618987.1| - 9.7e-27 92.1 0.2 9.7e-27 92.1 0.1 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF2953 PF11167.3 gi|20092912|ref|NP_618987.1| - 0.14 12.0 2.4 1.3 8.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) DUF4097 PF13349.1 gi|20092912|ref|NP_618987.1| - 0.18 11.3 0.0 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) SdpI PF13630.1 gi|20092912|ref|NP_618987.1| - 1.9 8.2 11.9 4.2 7.1 2.1 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF131 PF01998.12 gi|20092913|ref|NP_618988.1| - 2e-15 55.8 6.5 2e-15 55.8 4.5 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF1634 PF07843.6 gi|20092913|ref|NP_618988.1| - 0.016 14.8 2.4 0.02 14.4 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1634) DUF4526 PF15029.1 gi|20092913|ref|NP_618988.1| - 0.19 11.3 0.4 0.2 11.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4526) DUF1049 PF06305.6 gi|20092913|ref|NP_618988.1| - 1.5 8.3 3.8 14 5.2 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Leu_zip PF15294.1 gi|20092914|ref|NP_618989.1| - 0.0043 16.2 0.7 0.0046 16.0 0.5 1.1 1 0 0 1 1 1 1 Leucine zipper CCDC-167 PF15188.1 gi|20092914|ref|NP_618989.1| - 0.019 14.8 0.6 0.03 14.2 0.4 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 KAR9 PF08580.5 gi|20092914|ref|NP_618989.1| - 0.044 12.0 2.0 0.044 12.0 1.4 1.0 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Lzipper-MIP1 PF14389.1 gi|20092914|ref|NP_618989.1| - 0.1 12.7 0.9 0.16 12.0 0.3 1.5 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 MULE PF10551.4 gi|20092915|ref|NP_618990.1| - 9.7e-13 48.1 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20092915|ref|NP_618990.1| - 0.022 13.2 0.0 0.036 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20092915|ref|NP_618990.1| - 0.027 14.2 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20092915|ref|NP_618990.1| - 0.04 13.4 0.4 0.058 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20092915|ref|NP_618990.1| - 0.043 13.4 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20092915|ref|NP_618990.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20092915|ref|NP_618990.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20092915|ref|NP_618990.1| - 9.3 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger AAA PF00004.24 gi|20092916|ref|NP_618991.1| - 2.2e-43 147.6 0.1 5.5e-43 146.3 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|20092916|ref|NP_618991.1| - 5.2e-06 26.2 0.1 1.6e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|20092916|ref|NP_618991.1| - 1.3e-05 25.2 0.1 9.9e-05 22.4 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|20092916|ref|NP_618991.1| - 2.2e-05 24.6 0.1 0.00094 19.3 0.1 2.4 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|20092916|ref|NP_618991.1| - 6.5e-05 22.0 0.0 0.00015 20.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|20092916|ref|NP_618991.1| - 0.00012 21.7 0.1 0.00033 20.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_2 PF07724.9 gi|20092916|ref|NP_618991.1| - 0.00012 22.0 0.0 0.00028 20.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|20092916|ref|NP_618991.1| - 0.00023 21.0 0.0 0.00081 19.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|20092916|ref|NP_618991.1| - 0.0012 19.7 0.1 0.0021 18.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|20092916|ref|NP_618991.1| - 0.0022 17.4 0.0 0.0037 16.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein KaiC PF06745.8 gi|20092916|ref|NP_618991.1| - 0.0035 16.4 0.0 0.022 13.9 0.0 2.1 1 1 1 2 2 2 1 KaiC RNA_helicase PF00910.17 gi|20092916|ref|NP_618991.1| - 0.0042 17.2 0.0 0.0076 16.4 0.0 1.4 1 0 0 1 1 1 1 RNA helicase CPT PF07931.7 gi|20092916|ref|NP_618991.1| - 0.0043 16.6 0.0 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Sigma54_activat PF00158.21 gi|20092916|ref|NP_618991.1| - 0.0047 16.4 0.0 0.035 13.5 0.0 2.3 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|20092916|ref|NP_618991.1| - 0.0047 16.5 0.0 0.0086 15.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Torsin PF06309.6 gi|20092916|ref|NP_618991.1| - 0.0048 16.7 0.0 0.0094 15.8 0.0 1.4 1 0 0 1 1 1 1 Torsin AAA_33 PF13671.1 gi|20092916|ref|NP_618991.1| - 0.0049 16.7 0.0 0.0092 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|20092916|ref|NP_618991.1| - 0.0057 15.4 0.0 0.01 14.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|20092916|ref|NP_618991.1| - 0.007 16.4 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|20092916|ref|NP_618991.1| - 0.012 15.8 0.0 0.025 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|20092916|ref|NP_618991.1| - 0.013 14.4 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|20092916|ref|NP_618991.1| - 0.028 13.5 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|20092916|ref|NP_618991.1| - 0.03 14.2 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|20092916|ref|NP_618991.1| - 0.035 13.2 0.1 0.081 12.0 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|20092916|ref|NP_618991.1| - 0.035 13.6 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF815 PF05673.8 gi|20092916|ref|NP_618991.1| - 0.039 12.8 0.0 0.068 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|20092916|ref|NP_618991.1| - 0.04 13.5 0.3 0.16 11.5 0.1 1.9 1 1 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|20092916|ref|NP_618991.1| - 0.051 12.9 0.3 0.11 11.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain Lum_binding PF00677.12 gi|20092916|ref|NP_618991.1| - 0.057 13.3 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Lumazine binding domain NTPase_1 PF03266.10 gi|20092916|ref|NP_618991.1| - 0.062 13.0 0.2 0.27 10.9 0.0 1.9 1 1 1 2 2 2 0 NTPase PhoH PF02562.11 gi|20092916|ref|NP_618991.1| - 0.081 12.1 0.1 0.31 10.2 0.1 1.9 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.17 gi|20092916|ref|NP_618991.1| - 0.12 11.1 0.0 0.31 9.8 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Parvo_NS1 PF01057.12 gi|20092916|ref|NP_618991.1| - 0.15 10.9 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Phage_integrase PF00589.17 gi|20092917|ref|NP_618992.1| - 5.2e-09 36.0 0.0 5.8e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family UPF0150 PF03681.10 gi|20092918|ref|NP_618993.1| - 1.1e-19 69.7 0.1 1.4e-19 69.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|20092918|ref|NP_618993.1| - 1.1e-05 24.8 0.0 1.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF1993 PF09351.5 gi|20092918|ref|NP_618993.1| - 0.078 12.8 0.0 0.078 12.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) YcfA PF07927.7 gi|20092919|ref|NP_618994.1| - 3.6e-18 65.2 0.1 4.4e-18 64.9 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein Phage_integrase PF00589.17 gi|20092920|ref|NP_618995.1| - 1.5e-23 83.3 0.0 3.1e-23 82.3 0.0 1.5 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|20092920|ref|NP_618995.1| - 2.3e-10 40.6 0.3 1.2e-09 38.4 0.0 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|20092920|ref|NP_618995.1| - 5.4e-06 26.4 0.1 2.4e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DsbB PF02600.11 gi|20092921|ref|NP_618996.1| - 0.025 14.3 0.1 0.028 14.2 0.1 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB DUF2178 PF09946.4 gi|20092921|ref|NP_618996.1| - 0.084 12.6 0.7 0.22 11.2 0.5 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2178) OMP_b-brl PF13505.1 gi|20092921|ref|NP_618996.1| - 0.092 12.6 0.3 0.12 12.3 0.2 1.2 1 0 0 1 1 1 0 Outer membrane protein beta-barrel domain PrgI PF12666.2 gi|20092921|ref|NP_618996.1| - 0.12 12.5 0.1 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 PrgI family protein DUF4200 PF13863.1 gi|20092922|ref|NP_618997.1| - 0.015 15.2 3.6 0.015 15.2 2.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) APG6 PF04111.7 gi|20092922|ref|NP_618997.1| - 0.021 13.8 0.4 0.025 13.6 0.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF3450 PF11932.3 gi|20092922|ref|NP_618997.1| - 0.034 13.4 0.1 0.049 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Angiomotin_C PF12240.3 gi|20092922|ref|NP_618997.1| - 0.036 13.5 0.3 0.038 13.4 0.2 1.2 1 0 0 1 1 1 0 Angiomotin C terminal Lebercilin PF15619.1 gi|20092922|ref|NP_618997.1| - 0.05 13.0 0.4 0.067 12.6 0.3 1.2 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Phasin PF05597.6 gi|20092922|ref|NP_618997.1| - 0.073 12.8 1.8 0.17 11.6 1.2 1.6 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) CENP-H PF05837.7 gi|20092922|ref|NP_618997.1| - 0.085 13.0 1.5 0.15 12.2 1.0 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Fib_alpha PF08702.5 gi|20092922|ref|NP_618997.1| - 0.1 12.7 1.7 0.12 12.4 1.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family V-SNARE PF05008.10 gi|20092922|ref|NP_618997.1| - 0.14 12.3 2.4 0.36 11.0 1.6 1.6 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus AAA_13 PF13166.1 gi|20092922|ref|NP_618997.1| - 0.35 9.2 4.2 0.4 9.0 2.9 1.0 1 0 0 1 1 1 0 AAA domain Coatamer_beta_C PF07718.7 gi|20092924|ref|NP_618999.1| - 0.023 14.3 0.1 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 Coatomer beta C-terminal region rve PF00665.21 gi|20092925|ref|NP_619000.1| - 8.7e-20 71.0 0.0 1.6e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20092925|ref|NP_619000.1| - 8.1e-07 28.5 0.1 2e-06 27.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20092925|ref|NP_619000.1| - 1.4e-05 24.8 0.2 3.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.1 gi|20092925|ref|NP_619000.1| - 2.2e-05 23.8 0.0 6.7e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|20092925|ref|NP_619000.1| - 2.6e-05 23.7 0.5 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|20092925|ref|NP_619000.1| - 0.0087 16.1 0.0 0.23 11.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|20092925|ref|NP_619000.1| - 0.01 15.4 0.2 0.04 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Sigma70_r4 PF04545.11 gi|20092925|ref|NP_619000.1| - 0.012 14.8 0.1 0.03 13.6 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|20092925|ref|NP_619000.1| - 0.018 14.5 0.0 0.054 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.17 gi|20092925|ref|NP_619000.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20092925|ref|NP_619000.1| - 0.021 14.9 0.0 0.078 13.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20092925|ref|NP_619000.1| - 0.025 14.5 0.2 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20092925|ref|NP_619000.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.1 gi|20092925|ref|NP_619000.1| - 0.071 12.5 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|20092925|ref|NP_619000.1| - 0.087 12.3 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 IstB_IS21 PF01695.12 gi|20092926|ref|NP_619001.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20092926|ref|NP_619001.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20092926|ref|NP_619001.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20092926|ref|NP_619001.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20092926|ref|NP_619001.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20092926|ref|NP_619001.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20092926|ref|NP_619001.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20092926|ref|NP_619001.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20092926|ref|NP_619001.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092926|ref|NP_619001.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20092926|ref|NP_619001.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20092926|ref|NP_619001.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20092926|ref|NP_619001.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20092926|ref|NP_619001.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20092926|ref|NP_619001.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20092926|ref|NP_619001.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20092926|ref|NP_619001.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20092926|ref|NP_619001.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20092926|ref|NP_619001.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20092926|ref|NP_619001.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20092926|ref|NP_619001.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20092926|ref|NP_619001.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20092926|ref|NP_619001.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20092926|ref|NP_619001.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20092926|ref|NP_619001.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20092926|ref|NP_619001.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20092926|ref|NP_619001.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20092926|ref|NP_619001.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family MULE PF10551.4 gi|20092928|ref|NP_619003.1| - 9.9e-13 48.0 0.1 2.4e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|20092928|ref|NP_619003.1| - 0.024 13.1 0.0 0.037 12.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family LOH1CR12 PF10158.4 gi|20092928|ref|NP_619003.1| - 0.029 14.1 0.1 0.076 12.8 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DDE_Tnp_ISL3 PF01610.12 gi|20092928|ref|NP_619003.1| - 0.041 13.4 0.4 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 Transposase ADK_lid PF05191.9 gi|20092928|ref|NP_619003.1| - 0.042 13.5 1.3 3.4 7.4 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|20092928|ref|NP_619003.1| - 0.05 13.3 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|20092928|ref|NP_619003.1| - 1.4 9.2 9.5 0.17 12.1 2.3 2.8 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.24 gi|20092928|ref|NP_619003.1| - 9.2 6.0 7.4 3.9 7.2 2.5 2.3 2 1 0 2 2 2 0 PHD-finger DUF927 PF06048.6 gi|20092930|ref|NP_619005.1| - 3.8e-71 239.6 0.1 5.9e-71 239.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF927) HHH_8 PF14716.1 gi|20092931|ref|NP_619006.1| - 0.0024 17.9 0.1 0.0036 17.4 0.1 1.4 1 1 0 1 1 1 1 Helix-hairpin-helix domain MazG PF03819.12 gi|20092931|ref|NP_619006.1| - 0.083 12.8 0.3 0.22 11.4 0.2 1.8 1 1 1 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain FliT PF05400.8 gi|20092931|ref|NP_619006.1| - 0.12 12.7 0.2 1.2 9.6 0.0 2.1 2 0 0 2 2 2 0 Flagellar protein FliT Peptidase_M54 PF07998.6 gi|20092933|ref|NP_619008.1| - 0.038 13.7 0.0 0.88 9.2 0.0 2.1 1 1 1 2 2 2 0 Peptidase family M54 CGGC PF08821.6 gi|20092934|ref|NP_619009.1| - 0.0012 18.8 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 CGGC domain Zn_Tnp_IS1595 PF12760.2 gi|20092935|ref|NP_619010.1| - 0.0076 16.0 4.2 0.011 15.4 2.9 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|20092935|ref|NP_619010.1| - 0.072 12.9 4.7 0.08 12.8 3.2 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family Cys_rich_CPCC PF14206.1 gi|20092935|ref|NP_619010.1| - 0.27 10.8 3.3 0.43 10.1 2.3 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC PhnA_Zn_Ribbon PF08274.7 gi|20092935|ref|NP_619010.1| - 0.34 10.7 4.7 1.7 8.5 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|20092935|ref|NP_619010.1| - 0.48 10.4 4.7 0.36 10.8 0.7 2.1 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|20092935|ref|NP_619010.1| - 0.51 10.0 4.0 0.84 9.3 2.8 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain ADP_ribosyl_GH PF03747.9 gi|20092937|ref|NP_619012.1| - 2.1e-64 218.0 0.1 2.4e-64 217.8 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF123 PF01986.11 gi|20092938|ref|NP_619013.1| - 2.9e-29 101.1 0.0 3.6e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.22 gi|20092940|ref|NP_619015.1| - 1.7e-10 40.8 0.8 9.2e-10 38.4 0.6 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ACT PF01842.20 gi|20092940|ref|NP_619015.1| - 1.2e-05 24.6 0.0 0.0016 17.8 0.0 3.3 3 0 0 3 3 3 1 ACT domain Thr_dehydrat_C PF00585.13 gi|20092940|ref|NP_619015.1| - 5.5e-05 22.6 0.0 0.039 13.5 0.0 2.6 1 1 1 2 2 2 2 C-terminal regulatory domain of Threonine dehydratase Lactamase_B_2 PF12706.2 gi|20092940|ref|NP_619015.1| - 0.024 14.1 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain ACT_4 PF13291.1 gi|20092940|ref|NP_619015.1| - 0.036 14.4 0.0 9.2 6.6 0.0 2.6 2 0 0 2 2 2 0 ACT domain PAP2 PF01569.16 gi|20092941|ref|NP_619016.1| - 1.6e-22 79.5 7.3 1.6e-22 79.5 5.1 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|20092941|ref|NP_619016.1| - 9.6e-05 21.9 3.4 0.00017 21.1 2.4 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|20092941|ref|NP_619016.1| - 0.00026 21.2 2.6 0.00026 21.2 1.8 2.3 2 1 0 2 2 2 1 PAP2 superfamily C-terminal DUF212 PF02681.9 gi|20092941|ref|NP_619016.1| - 0.00047 19.8 0.4 0.0049 16.5 0.1 2.0 1 1 1 2 2 2 1 Divergent PAP2 family CcmE PF03100.10 gi|20092942|ref|NP_619017.1| - 7.7e-11 41.6 0.0 8.1e-11 41.5 0.0 1.0 1 0 0 1 1 1 1 CcmE tRNA_anti-like PF12869.2 gi|20092942|ref|NP_619017.1| - 0.037 13.5 0.7 0.11 11.9 0.1 1.8 1 1 1 2 2 2 0 tRNA_anti-like polyprenyl_synt PF00348.12 gi|20092943|ref|NP_619018.1| - 1.4e-43 148.6 0.0 1.8e-43 148.2 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase Radical_SAM PF04055.16 gi|20092944|ref|NP_619019.1| - 7.2e-18 65.3 0.0 1.5e-17 64.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|20092944|ref|NP_619019.1| - 5.9e-09 36.1 0.0 1.5e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|20092944|ref|NP_619019.1| - 0.0015 18.6 0.0 0.0027 17.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain V-ATPase_G PF03179.10 gi|20092945|ref|NP_619020.1| - 3.7e-05 23.9 13.8 4.4e-05 23.7 9.5 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|20092945|ref|NP_619020.1| - 7.8e-05 22.4 18.5 0.0069 16.1 12.8 2.0 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF2259 PF10016.4 gi|20092945|ref|NP_619020.1| - 0.042 13.5 0.4 0.05 13.3 0.3 1.1 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) DUF3043 PF11241.3 gi|20092945|ref|NP_619020.1| - 0.14 11.7 2.5 0.19 11.2 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) HrpE PF06188.7 gi|20092945|ref|NP_619020.1| - 0.19 11.4 5.4 0.14 11.8 2.4 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|20092945|ref|NP_619020.1| - 1.4 9.3 8.6 2.3 8.6 4.5 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) LUC7 PF03194.10 gi|20092945|ref|NP_619020.1| - 3.8 6.9 9.0 5.2 6.5 6.2 1.3 1 0 0 1 1 1 0 LUC7 N_terminus DUF4398 PF14346.1 gi|20092945|ref|NP_619020.1| - 9.3 6.3 13.4 2 8.4 5.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) V_ATPase_I PF01496.14 gi|20092946|ref|NP_619021.1| - 5.9e-135 451.0 7.9 4e-100 335.8 0.2 2.5 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family Vps51 PF08700.6 gi|20092946|ref|NP_619021.1| - 0.0044 16.8 2.8 0.04 13.7 0.2 2.8 2 1 1 3 3 3 1 Vps51/Vps67 DUF4200 PF13863.1 gi|20092946|ref|NP_619021.1| - 0.0093 15.9 3.2 0.21 11.5 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4200) Spc7 PF08317.6 gi|20092946|ref|NP_619021.1| - 0.014 14.1 2.5 0.098 11.2 0.4 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein BLOC1_2 PF10046.4 gi|20092946|ref|NP_619021.1| - 0.015 15.4 6.3 0.16 12.1 0.2 2.8 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|20092946|ref|NP_619021.1| - 0.038 13.5 0.3 0.038 13.5 0.2 4.9 6 0 0 6 6 4 0 IncA protein Cortex-I_coil PF09304.5 gi|20092946|ref|NP_619021.1| - 0.045 13.7 4.6 2.1 8.4 0.4 2.3 2 0 0 2 2 2 0 Cortexillin I, coiled coil DUF4140 PF13600.1 gi|20092946|ref|NP_619021.1| - 0.089 13.2 2.2 1.5 9.2 0.3 2.6 3 0 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) PspA_IM30 PF04012.7 gi|20092946|ref|NP_619021.1| - 0.11 11.8 2.1 2.8 7.2 0.1 2.2 2 0 0 2 2 2 0 PspA/IM30 family DUF904 PF06005.7 gi|20092946|ref|NP_619021.1| - 0.11 12.7 8.7 1.1 9.6 0.4 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF904) DivIC PF04977.10 gi|20092946|ref|NP_619021.1| - 0.16 11.4 7.8 4 7.0 1.6 2.7 2 0 0 2 2 2 0 Septum formation initiator FlaC_arch PF05377.6 gi|20092946|ref|NP_619021.1| - 0.23 11.3 1.7 30 4.5 0.1 3.1 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) TMF_DNA_bd PF12329.3 gi|20092946|ref|NP_619021.1| - 0.38 10.5 6.7 2.1 8.2 1.2 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Med4 PF10018.4 gi|20092946|ref|NP_619021.1| - 0.47 9.8 4.1 1.8 7.9 0.5 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Fib_alpha PF08702.5 gi|20092946|ref|NP_619021.1| - 0.58 10.2 2.0 26 4.9 0.1 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.15 gi|20092946|ref|NP_619021.1| - 1.1 9.0 8.9 2.1 8.1 1.0 2.5 2 0 0 2 2 2 0 Prefoldin subunit Prefoldin PF02996.12 gi|20092946|ref|NP_619021.1| - 1.3 8.7 6.1 5.9 6.5 0.3 2.7 2 0 0 2 2 2 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|20092946|ref|NP_619021.1| - 1.5 9.2 4.2 29 5.1 0.0 3.0 3 0 0 3 3 2 0 MerR, DNA binding Syntaxin PF00804.20 gi|20092946|ref|NP_619021.1| - 2.9 8.1 6.1 20 5.3 0.6 2.3 2 0 0 2 2 2 0 Syntaxin ATP-synt_C PF00137.16 gi|20092947|ref|NP_619022.1| - 3.4e-17 62.0 9.6 3.9e-17 61.9 6.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit C TraT PF05818.7 gi|20092947|ref|NP_619022.1| - 0.27 10.6 1.3 0.31 10.4 0.9 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein vATP-synt_E PF01991.13 gi|20092948|ref|NP_619023.1| - 2.4e-35 121.6 14.7 8.5e-35 119.8 10.2 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Porphobil_deam PF01379.15 gi|20092948|ref|NP_619023.1| - 0.043 12.7 0.4 0.074 11.9 0.2 1.5 1 1 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain GPCR_chapero_1 PF11904.3 gi|20092948|ref|NP_619023.1| - 0.046 12.8 0.8 0.054 12.6 0.5 1.2 1 0 0 1 1 1 0 GPCR-chaperone Glyco_hydro_17 PF00332.13 gi|20092948|ref|NP_619023.1| - 0.084 11.8 0.2 0.11 11.5 0.2 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 17 ATP-synt_B PF00430.13 gi|20092948|ref|NP_619023.1| - 0.084 12.6 8.1 0.092 12.5 4.8 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF1043 PF06295.7 gi|20092948|ref|NP_619023.1| - 0.12 12.0 3.3 0.11 12.1 1.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF4206 PF13901.1 gi|20092948|ref|NP_619023.1| - 0.14 11.6 0.4 0.17 11.3 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) Prominin PF05478.6 gi|20092948|ref|NP_619023.1| - 0.15 9.5 3.7 0.18 9.2 2.6 1.1 1 0 0 1 1 1 0 Prominin DUF4047 PF13256.1 gi|20092948|ref|NP_619023.1| - 0.19 11.6 4.8 0.34 10.8 3.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) OmpH PF03938.9 gi|20092948|ref|NP_619023.1| - 0.2 11.5 6.7 0.3 11.0 4.7 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Streptin-Immun PF11083.3 gi|20092948|ref|NP_619023.1| - 0.23 11.4 6.4 0.91 9.5 0.7 3.0 1 1 1 2 2 2 0 Lantibiotic streptin immunity protein DUF3887 PF13026.1 gi|20092948|ref|NP_619023.1| - 0.38 11.0 6.1 0.95 9.7 1.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3887) COG5 PF10392.4 gi|20092948|ref|NP_619023.1| - 0.48 10.3 7.3 1.1 9.2 5.0 1.6 1 1 0 1 1 1 0 Golgi transport complex subunit 5 RRF PF01765.14 gi|20092948|ref|NP_619023.1| - 0.7 9.3 11.1 0.7 9.3 4.0 2.3 1 1 1 2 2 2 0 Ribosome recycling factor XhlA PF10779.4 gi|20092948|ref|NP_619023.1| - 1 9.3 4.6 1.2 9.1 1.9 2.1 1 1 0 1 1 1 0 Haemolysin XhlA vATP-synt_AC39 PF01992.11 gi|20092949|ref|NP_619024.1| - 3.4e-103 345.3 8.9 3.9e-103 345.1 6.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|20092950|ref|NP_619025.1| - 5.5e-18 65.1 0.1 6.3e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|20092951|ref|NP_619026.1| - 2.1e-97 324.8 0.0 3.1e-97 324.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|20092951|ref|NP_619026.1| - 2.1e-20 73.2 1.1 4e-20 72.3 0.7 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|20092951|ref|NP_619026.1| - 3.7e-10 39.8 2.2 3.7e-10 39.8 1.6 2.4 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain DUF1932 PF09130.6 gi|20092951|ref|NP_619026.1| - 0.011 15.4 1.6 0.23 11.2 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|20092952|ref|NP_619027.1| - 1.1e-59 201.5 0.0 1.4e-59 201.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|20092952|ref|NP_619027.1| - 8.1e-17 61.7 0.0 1.5e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|20092952|ref|NP_619027.1| - 3.5e-13 49.5 1.9 3.5e-13 49.5 1.3 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|20092952|ref|NP_619027.1| - 4.6e-05 23.2 0.7 0.00013 21.8 0.5 1.8 1 0 0 1 1 1 1 HAS barrel domain DUF561 PF04481.7 gi|20092952|ref|NP_619027.1| - 0.014 14.3 0.0 0.023 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ATP-synt_D PF01813.12 gi|20092953|ref|NP_619028.1| - 5.2e-64 215.4 7.7 5.8e-64 215.2 5.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Ead_Ea22 PF13935.1 gi|20092953|ref|NP_619028.1| - 0.033 14.5 2.6 0.053 13.8 0.2 2.1 1 1 1 2 2 2 0 Ead/Ea22-like protein Syntaxin_2 PF14523.1 gi|20092953|ref|NP_619028.1| - 0.32 11.0 2.7 4.4 7.3 0.4 2.2 2 0 0 2 2 2 0 Syntaxin-like protein Sua5_yciO_yrdC PF01300.13 gi|20092954|ref|NP_619029.1| - 5.5e-42 143.0 0.0 8.5e-42 142.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|20092954|ref|NP_619029.1| - 2e-29 100.6 16.9 5.3e-15 54.5 3.1 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|20092954|ref|NP_619029.1| - 9.6e-23 80.1 0.1 2.3e-22 78.8 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|20092954|ref|NP_619029.1| - 9.7e-05 21.9 0.0 0.00021 20.8 0.0 1.5 1 0 0 1 1 1 1 Glycoprotease family zf-NPL4 PF05020.10 gi|20092954|ref|NP_619029.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 NPL4 family, putative zinc binding region Cys_rich_KTR PF14205.1 gi|20092954|ref|NP_619029.1| - 0.79 9.2 3.8 24 4.4 0.0 3.0 3 0 0 3 3 3 0 Cysteine-rich KTR DUF1699 PF08004.6 gi|20092955|ref|NP_619030.1| - 6.1e-54 181.0 0.2 7e-54 180.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) FA PF08736.6 gi|20092955|ref|NP_619030.1| - 0.061 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 FERM adjacent (FA) ATG16 PF08614.6 gi|20092956|ref|NP_619031.1| - 4.5e-11 42.9 57.1 0.00049 19.9 4.7 5.3 1 1 4 5 5 5 5 Autophagy protein 16 (ATG16) Reo_sigmaC PF04582.7 gi|20092956|ref|NP_619031.1| - 8.8e-10 38.2 11.7 0.00032 19.9 0.1 3.2 1 1 2 3 3 3 3 Reovirus sigma C capsid protein SlyX PF04102.7 gi|20092956|ref|NP_619031.1| - 2.1e-05 24.7 44.4 0.026 14.8 0.2 7.8 1 1 8 9 9 9 6 SlyX AAA_13 PF13166.1 gi|20092956|ref|NP_619031.1| - 0.00075 18.1 53.8 0.0084 14.6 12.7 3.1 1 1 1 2 2 2 1 AAA domain DUF641 PF04859.7 gi|20092956|ref|NP_619031.1| - 0.002 17.8 52.7 0.4 10.4 0.6 7.8 2 1 4 8 8 8 5 Plant protein of unknown function (DUF641) ERM PF00769.14 gi|20092956|ref|NP_619031.1| - 0.0024 17.4 15.9 0.0024 17.4 11.1 4.4 1 1 3 4 4 4 1 Ezrin/radixin/moesin family Fib_alpha PF08702.5 gi|20092956|ref|NP_619031.1| - 0.011 15.8 41.0 0.049 13.7 1.9 5.6 1 1 4 6 6 6 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.7 gi|20092956|ref|NP_619031.1| - 0.011 15.4 0.9 0.011 15.4 0.6 5.0 1 1 4 5 5 5 0 Laminin Domain II IncA PF04156.9 gi|20092956|ref|NP_619031.1| - 0.016 14.8 71.8 0.09 12.3 5.2 4.3 1 1 3 4 4 4 0 IncA protein Lebercilin PF15619.1 gi|20092956|ref|NP_619031.1| - 0.71 9.2 65.1 0.096 12.1 11.5 5.0 1 1 3 4 4 4 0 Ciliary protein causing Leber congenital amaurosis disease DUF4201 PF13870.1 gi|20092956|ref|NP_619031.1| - 1.5 8.2 61.4 0.032 13.6 6.1 5.1 1 1 2 4 4 4 0 Domain of unknown function (DUF4201) ADIP PF11559.3 gi|20092956|ref|NP_619031.1| - 2.1 8.2 57.8 0.67 9.8 4.4 6.1 1 1 3 5 5 5 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.7 gi|20092956|ref|NP_619031.1| - 5.8 7.2 26.6 0.58 10.4 0.1 6.2 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein B12-binding PF02310.14 gi|20092957|ref|NP_619032.1| - 3.1e-21 75.4 0.3 6.4e-21 74.4 0.2 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20092957|ref|NP_619032.1| - 1.8e-14 53.5 5.7 5.8e-12 45.4 0.2 2.5 1 1 1 2 2 2 2 B12 binding domain Beta-lactamase2 PF13354.1 gi|20092957|ref|NP_619032.1| - 0.085 12.2 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase enzyme family URO-D PF01208.12 gi|20092958|ref|NP_619033.1| - 4.8e-72 242.7 0.3 5.4e-72 242.5 0.2 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MFS_1 PF07690.11 gi|20092959|ref|NP_619034.1| - 4.9e-46 157.0 59.9 2.6e-38 131.6 25.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1724 PF08350.5 gi|20092960|ref|NP_619035.1| - 8.3e-23 79.6 0.2 2.1e-22 78.3 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20092960|ref|NP_619035.1| - 0.00012 21.6 0.0 0.00031 20.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|20092960|ref|NP_619035.1| - 0.00083 19.0 0.0 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|20092960|ref|NP_619035.1| - 0.0019 17.8 0.1 0.005 16.5 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|20092960|ref|NP_619035.1| - 0.0058 16.9 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|20092960|ref|NP_619035.1| - 0.0081 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|20092960|ref|NP_619035.1| - 0.015 14.9 0.1 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.7 gi|20092960|ref|NP_619035.1| - 0.027 14.0 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain Reovirus_L2 PF06016.6 gi|20092960|ref|NP_619035.1| - 0.029 11.3 0.0 0.036 11.0 0.0 1.1 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) DUF2271 PF10029.4 gi|20092960|ref|NP_619035.1| - 0.046 13.1 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2271) HTH_34 PF13601.1 gi|20092960|ref|NP_619035.1| - 0.073 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|20092960|ref|NP_619035.1| - 0.1 12.0 0.4 0.18 11.3 0.3 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit MotA_activ PF09114.5 gi|20092960|ref|NP_619035.1| - 0.13 12.0 0.0 0.32 10.7 0.0 1.7 1 1 0 1 1 1 0 Transcription factor MotA, activation domain KASH PF10541.4 gi|20092961|ref|NP_619036.1| - 1.1 9.1 3.5 1.5 8.7 2.4 1.2 1 0 0 1 1 1 0 Nuclear envelope localisation domain DUF1699 PF08004.6 gi|20092962|ref|NP_619037.1| - 6.5e-69 229.4 2.6 7.3e-69 229.3 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.9 gi|20092962|ref|NP_619037.1| - 0.041 14.1 0.1 0.066 13.4 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) LKAAEAR PF15478.1 gi|20092962|ref|NP_619037.1| - 0.046 13.9 0.2 0.085 13.1 0.0 1.5 2 0 0 2 2 2 0 Family of unknown function with LKAAEAR motif PAM2 PF07145.10 gi|20092962|ref|NP_619037.1| - 0.086 12.3 0.2 11 5.7 0.0 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region Rogdi_lz PF10259.4 gi|20092962|ref|NP_619037.1| - 0.1 11.7 0.0 0.12 11.4 0.0 1.0 1 0 0 1 1 1 0 Rogdi leucine zipper containing protein Flavodoxin_5 PF12724.2 gi|20092963|ref|NP_619038.1| - 4.8e-06 26.6 0.0 7.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Fer4_8 PF13183.1 gi|20092963|ref|NP_619038.1| - 7.2e-06 25.9 1.0 0.0031 17.5 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20092963|ref|NP_619038.1| - 1.9e-05 24.0 10.7 0.00015 21.2 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20092963|ref|NP_619038.1| - 2.8e-05 23.8 10.3 0.0001 21.9 7.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20092963|ref|NP_619038.1| - 3.1e-05 23.7 3.3 0.0051 16.6 0.1 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092963|ref|NP_619038.1| - 7.1e-05 23.4 3.6 0.16 12.7 0.3 2.6 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|20092963|ref|NP_619038.1| - 0.00017 21.7 9.0 0.00077 19.6 6.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20092963|ref|NP_619038.1| - 0.00057 20.1 5.0 0.0059 16.9 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20092963|ref|NP_619038.1| - 0.0047 17.2 11.1 0.012 16.0 6.9 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Flavodoxin_1 PF00258.20 gi|20092963|ref|NP_619038.1| - 0.0059 16.6 0.1 0.27 11.2 0.0 2.3 2 1 0 2 2 2 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|20092963|ref|NP_619038.1| - 0.013 14.9 0.1 0.19 11.1 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin-like fold Flavodoxin_4 PF12682.2 gi|20092963|ref|NP_619038.1| - 0.025 13.9 0.1 7.7 5.8 0.0 2.3 1 1 0 2 2 2 0 Flavodoxin FMN_red PF03358.10 gi|20092963|ref|NP_619038.1| - 0.087 12.3 0.1 7.2 6.0 0.1 2.3 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Fer4_18 PF13746.1 gi|20092963|ref|NP_619038.1| - 0.093 13.1 10.6 0.069 13.5 1.6 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092963|ref|NP_619038.1| - 0.26 11.6 11.6 1.4 9.4 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20092963|ref|NP_619038.1| - 0.32 11.6 14.5 1.4 9.6 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20092963|ref|NP_619038.1| - 2 8.4 11.2 0.76 9.7 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20092963|ref|NP_619038.1| - 3.6 7.7 11.4 6.6 6.8 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1699 PF08004.6 gi|20092964|ref|NP_619039.1| - 9.5e-66 219.2 0.1 1.1e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4394 PF14339.1 gi|20092964|ref|NP_619039.1| - 0.16 11.2 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) PAM2 PF07145.10 gi|20092964|ref|NP_619039.1| - 0.16 11.5 0.2 20 4.9 0.0 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region DHH PF01368.15 gi|20092965|ref|NP_619040.1| - 1e-06 28.4 0.0 1.4e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|20092965|ref|NP_619040.1| - 1.7e-05 24.4 0.0 4.9e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 DHHA1 domain DZR PF12773.2 gi|20092966|ref|NP_619041.1| - 0.0013 18.5 1.5 0.0051 16.6 0.1 2.0 2 0 0 2 2 2 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|20092966|ref|NP_619041.1| - 0.017 14.5 4.4 1.5 8.3 0.0 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-dskA_traR PF01258.12 gi|20092966|ref|NP_619041.1| - 0.027 14.1 4.6 4.9 6.9 0.0 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-NADH-PPase PF09297.6 gi|20092966|ref|NP_619041.1| - 0.068 12.6 0.1 0.15 11.6 0.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|20092966|ref|NP_619041.1| - 0.31 11.4 2.8 0.59 10.5 0.0 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C5HC2 PF02928.11 gi|20092966|ref|NP_619041.1| - 0.32 11.0 2.7 1.1 9.4 0.1 2.3 2 1 0 2 2 2 0 C5HC2 zinc finger A2L_zn_ribbon PF08792.5 gi|20092966|ref|NP_619041.1| - 0.32 10.4 6.8 1.5 8.3 0.1 3.3 3 1 0 3 3 3 0 A2L zinc ribbon domain NCD3G PF07562.9 gi|20092966|ref|NP_619041.1| - 1 9.1 4.9 1.5 8.6 0.4 2.2 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR PHD PF00628.24 gi|20092966|ref|NP_619041.1| - 3.1 7.5 6.5 18 5.1 0.2 2.4 2 1 0 2 2 2 0 PHD-finger Nudix_N_2 PF14803.1 gi|20092966|ref|NP_619041.1| - 8.5 6.1 9.7 0.86 9.3 0.2 2.8 3 0 0 3 3 3 0 Nudix N-terminal Fer4 PF00037.22 gi|20092967|ref|NP_619042.1| - 1.3e-53 176.5 87.1 1.2e-07 30.9 2.0 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20092967|ref|NP_619042.1| - 4e-48 161.5 123.6 3.4e-11 43.3 6.7 5.7 2 1 6 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20092967|ref|NP_619042.1| - 5.5e-36 122.6 60.6 2.4e-10 40.4 6.9 5.8 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092967|ref|NP_619042.1| - 1.5e-33 113.2 84.3 4.6e-06 26.2 0.8 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20092967|ref|NP_619042.1| - 3.2e-32 111.0 52.3 2.9e-10 40.7 2.5 7.2 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20092967|ref|NP_619042.1| - 7.3e-28 96.2 63.6 5.5e-08 32.5 5.7 6.3 5 2 0 5 5 5 5 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20092967|ref|NP_619042.1| - 9.2e-28 96.0 114.5 1.4e-09 37.8 3.6 5.6 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20092967|ref|NP_619042.1| - 5.9e-27 93.2 67.3 3.2e-08 33.2 7.6 6.8 2 1 6 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20092967|ref|NP_619042.1| - 1.3e-23 81.4 82.1 2.9e-06 26.8 2.0 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20092967|ref|NP_619042.1| - 2e-23 82.4 53.6 1.9e-07 31.3 6.9 5.9 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092967|ref|NP_619042.1| - 1.6e-20 71.5 77.0 9.3e-05 22.4 2.1 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20092967|ref|NP_619042.1| - 1.3e-16 60.7 67.5 0.00024 21.4 0.4 8.1 6 2 2 8 8 8 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20092967|ref|NP_619042.1| - 4e-15 56.1 55.3 0.013 16.0 0.6 8.6 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20092967|ref|NP_619042.1| - 8.4e-15 54.1 110.3 0.003 17.9 4.3 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20092967|ref|NP_619042.1| - 2.2e-08 34.3 77.9 0.063 13.6 2.4 8.7 8 1 1 9 9 9 6 4Fe-4S single cluster domain Amidohydro_3 PF07969.6 gi|20092968|ref|NP_619043.1| - 6.9e-70 236.2 0.1 8.1e-70 236.0 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|20092968|ref|NP_619043.1| - 6.9e-11 41.8 0.2 6.2e-10 38.7 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|20092968|ref|NP_619043.1| - 1.5e-07 31.7 1.3 5.1e-05 23.4 0.1 2.6 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|20092968|ref|NP_619043.1| - 2.2e-05 24.3 0.4 0.15 11.7 0.2 2.7 2 1 0 2 2 2 2 Amidohydrolase family GXGXG PF01493.14 gi|20092969|ref|NP_619044.1| - 7.6e-41 139.3 24.9 1e-40 138.8 17.2 1.2 1 0 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.16 gi|20092970|ref|NP_619045.1| - 1.1e-15 57.3 0.0 1.3e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|20092971|ref|NP_619046.1| - 1.5e-12 46.9 0.0 7e-12 44.8 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Methyltransf_31 PF13847.1 gi|20092973|ref|NP_619048.1| - 2.5e-19 69.3 0.0 3.5e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092973|ref|NP_619048.1| - 7.5e-18 64.7 0.0 1.1e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092973|ref|NP_619048.1| - 3e-14 53.5 0.0 1.2e-13 51.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092973|ref|NP_619048.1| - 6.4e-14 52.2 0.0 9.7e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20092973|ref|NP_619048.1| - 1.8e-13 50.7 0.0 3e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20092973|ref|NP_619048.1| - 5.3e-10 38.8 0.0 7.9e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|20092973|ref|NP_619048.1| - 6.7e-09 36.0 0.0 1.4e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20092973|ref|NP_619048.1| - 9.6e-08 32.0 0.0 1.3e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|20092973|ref|NP_619048.1| - 1.8e-05 23.8 0.0 3.3e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase NodS PF05401.6 gi|20092973|ref|NP_619048.1| - 3e-05 23.5 0.0 4.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|20092973|ref|NP_619048.1| - 0.00012 21.2 0.0 0.00016 20.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|20092973|ref|NP_619048.1| - 0.00015 20.9 0.0 0.00023 20.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.6 gi|20092973|ref|NP_619048.1| - 0.00017 20.4 0.0 0.00021 20.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|20092973|ref|NP_619048.1| - 0.00022 20.6 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.7 gi|20092973|ref|NP_619048.1| - 0.00031 19.7 0.0 0.00039 19.3 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase PCMT PF01135.14 gi|20092973|ref|NP_619048.1| - 0.00053 19.5 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|20092973|ref|NP_619048.1| - 0.0015 17.7 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.11 gi|20092973|ref|NP_619048.1| - 0.0037 16.8 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TPMT PF05724.6 gi|20092973|ref|NP_619048.1| - 0.0079 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) FmrO PF07091.6 gi|20092973|ref|NP_619048.1| - 0.026 13.5 0.0 0.036 13.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|20092973|ref|NP_619048.1| - 0.034 13.5 0.0 0.052 12.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|20092973|ref|NP_619048.1| - 0.062 12.8 0.1 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF3473 PF11959.3 gi|20092974|ref|NP_619049.1| - 8.4e-40 135.3 0.1 1.3e-39 134.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|20092974|ref|NP_619049.1| - 2.6e-17 62.5 0.0 3.9e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase RVT_1 PF00078.22 gi|20092975|ref|NP_619050.1| - 2.8e-47 160.8 0.0 5.1e-47 159.9 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.6 gi|20092975|ref|NP_619050.1| - 1.8e-17 62.8 6.9 1.8e-17 62.8 4.8 1.9 2 0 0 2 2 2 1 Group II intron, maturase-specific domain Rhodanese PF00581.15 gi|20092975|ref|NP_619050.1| - 0.1 12.9 0.4 2.4 8.5 0.0 2.7 2 1 0 2 2 2 0 Rhodanese-like domain Mga PF05043.8 gi|20092975|ref|NP_619050.1| - 0.13 12.5 0.1 0.44 10.8 0.0 1.9 2 0 0 2 2 2 0 Mga helix-turn-helix domain RVT_1 PF00078.22 gi|20092976|ref|NP_619051.1| - 8.8e-28 97.1 0.0 1.3e-27 96.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.1 gi|20092976|ref|NP_619051.1| - 6.9e-14 51.6 0.1 1.1e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_N PF13655.1 gi|20092977|ref|NP_619052.1| - 1.2e-30 105.3 2.2 2.3e-30 104.5 1.5 1.4 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_1 PF00078.22 gi|20092977|ref|NP_619052.1| - 5.4e-18 65.1 0.0 1.1e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) FliD_N PF02465.13 gi|20092977|ref|NP_619052.1| - 0.052 13.9 0.3 0.087 13.2 0.2 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Myb_DNA-binding PF00249.26 gi|20092977|ref|NP_619052.1| - 0.1 12.6 0.7 3.7 7.6 0.0 2.7 2 1 0 2 2 2 0 Myb-like DNA-binding domain rve PF00665.21 gi|20092978|ref|NP_619053.1| - 5.6e-07 29.6 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain MerR PF00376.18 gi|20092978|ref|NP_619053.1| - 0.00058 19.3 0.5 0.001 18.5 0.1 1.6 2 0 0 2 2 1 1 MerR family regulatory protein HTH_38 PF13936.1 gi|20092978|ref|NP_619053.1| - 0.00068 19.1 0.0 0.0019 17.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20092978|ref|NP_619053.1| - 0.0024 17.3 0.0 0.0066 15.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|20092978|ref|NP_619053.1| - 0.0039 16.8 0.0 0.16 11.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|20092978|ref|NP_619053.1| - 0.0042 16.6 0.0 0.011 15.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|20092978|ref|NP_619053.1| - 0.0057 16.2 0.1 0.013 15.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain MerR_1 PF13411.1 gi|20092978|ref|NP_619053.1| - 0.0075 16.0 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_7 PF02796.10 gi|20092978|ref|NP_619053.1| - 0.0079 16.0 0.5 0.4 10.5 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain of resolvase DUF2312 PF10073.4 gi|20092978|ref|NP_619053.1| - 0.014 14.7 0.0 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_IclR PF09339.5 gi|20092978|ref|NP_619053.1| - 0.017 14.7 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|20092978|ref|NP_619053.1| - 0.022 14.9 0.0 0.049 13.7 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.1 gi|20092978|ref|NP_619053.1| - 0.022 14.1 0.1 0.089 12.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|20092978|ref|NP_619053.1| - 0.024 14.4 0.2 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix DUF746 PF05344.6 gi|20092978|ref|NP_619053.1| - 0.028 13.9 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|20092978|ref|NP_619053.1| - 0.029 14.3 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|20092978|ref|NP_619053.1| - 0.042 13.9 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|20092978|ref|NP_619053.1| - 0.064 13.1 0.1 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 NUMOD1 domain HTH_17 PF12728.2 gi|20092978|ref|NP_619053.1| - 0.085 13.1 0.1 0.24 11.6 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain Methyltransf_12 PF08242.7 gi|20092979|ref|NP_619054.1| - 1.4e-14 54.3 0.1 2.7e-14 53.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092979|ref|NP_619054.1| - 1.5e-13 51.0 0.0 2.5e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092979|ref|NP_619054.1| - 2e-13 50.9 0.0 3.5e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092979|ref|NP_619054.1| - 7.8e-13 48.6 0.0 1.3e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092979|ref|NP_619054.1| - 3.4e-11 42.9 0.0 4.3e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092979|ref|NP_619054.1| - 1.1e-09 38.1 0.0 1.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092979|ref|NP_619054.1| - 5.8e-08 32.1 0.0 1e-07 31.3 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|20092979|ref|NP_619054.1| - 1.2e-07 31.2 0.0 1.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|20092979|ref|NP_619054.1| - 9.5e-07 28.1 0.0 1.4e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|20092979|ref|NP_619054.1| - 9.9e-05 21.4 0.0 0.00019 20.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|20092979|ref|NP_619054.1| - 0.00011 21.3 0.0 0.00016 20.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase NodS PF05401.6 gi|20092979|ref|NP_619054.1| - 0.00053 19.4 0.0 0.00067 19.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|20092979|ref|NP_619054.1| - 0.008 15.5 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|20092979|ref|NP_619054.1| - 0.021 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|20092979|ref|NP_619054.1| - 0.039 12.9 0.0 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_2 PF00891.13 gi|20092979|ref|NP_619054.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase N2227 PF07942.7 gi|20092979|ref|NP_619054.1| - 0.12 11.3 0.1 1.3 7.8 0.0 2.0 1 1 0 2 2 2 0 N2227-like protein DUF98 PF01947.11 gi|20092980|ref|NP_619055.1| - 1.4e-21 76.7 0.0 1.9e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF98) UTRA PF07702.8 gi|20092980|ref|NP_619055.1| - 9.7e-07 28.4 0.1 1.3e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 UTRA domain Chor_lyase PF04345.8 gi|20092980|ref|NP_619055.1| - 0.0019 17.6 0.0 0.0021 17.4 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase DUF2553 PF10830.3 gi|20092981|ref|NP_619056.1| - 0.053 14.0 0.1 0.14 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2553) Pyridox_oxidase PF01243.15 gi|20092982|ref|NP_619057.1| - 6.2e-15 54.9 0.0 8.1e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1428 PF07237.6 gi|20092982|ref|NP_619057.1| - 0.094 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1428) AIRS PF00586.19 gi|20092984|ref|NP_619059.1| - 8e-20 70.8 1.5 1.7e-19 69.8 1.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|20092984|ref|NP_619059.1| - 2.1e-14 53.7 0.0 3.5e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain SH3_3 PF08239.6 gi|20092984|ref|NP_619059.1| - 0.003 17.7 0.1 3.1 8.0 0.0 3.1 3 0 0 3 3 3 2 Bacterial SH3 domain Fer4 PF00037.22 gi|20092985|ref|NP_619060.1| - 5.3e-18 63.8 19.1 1.8e-09 36.8 4.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20092985|ref|NP_619060.1| - 8.7e-15 54.2 24.5 2e-10 40.2 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20092985|ref|NP_619060.1| - 1.8e-13 49.7 18.8 7.9e-07 28.6 4.0 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20092985|ref|NP_619060.1| - 1e-12 48.1 11.9 1.3e-12 47.8 8.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20092985|ref|NP_619060.1| - 1.4e-12 46.7 17.6 3.2e-06 26.7 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20092985|ref|NP_619060.1| - 3.7e-11 43.0 10.4 4.9e-11 42.7 7.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20092985|ref|NP_619060.1| - 8.6e-10 38.1 13.1 0.0001 22.3 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20092985|ref|NP_619060.1| - 1.6e-09 37.4 11.6 2e-09 37.1 8.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20092985|ref|NP_619060.1| - 2e-09 38.0 11.3 6.8e-05 23.5 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|20092985|ref|NP_619060.1| - 5e-09 36.0 10.8 1.1e-08 34.9 7.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20092985|ref|NP_619060.1| - 4.4e-06 26.9 13.1 0.003 17.8 1.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20092985|ref|NP_619060.1| - 8.2e-06 26.3 18.5 0.0004 20.8 3.1 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20092985|ref|NP_619060.1| - 1e-05 25.7 20.4 0.0049 17.3 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20092985|ref|NP_619060.1| - 2.8e-05 24.4 16.4 0.0052 17.1 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20092985|ref|NP_619060.1| - 5.8e-05 23.3 18.0 0.0049 17.2 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|20092985|ref|NP_619060.1| - 0.00013 21.7 4.6 0.00014 21.7 3.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF164 PF02591.10 gi|20092985|ref|NP_619060.1| - 2.2 8.1 6.6 3.6 7.4 3.8 1.8 1 1 1 2 2 2 0 Putative zinc ribbon domain Radical_SAM PF04055.16 gi|20092986|ref|NP_619061.1| - 2.3e-21 76.6 0.1 3.6e-21 76.0 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20092986|ref|NP_619061.1| - 1.6e-05 24.8 0.5 3.9e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20092986|ref|NP_619061.1| - 0.00014 22.0 0.0 0.0003 20.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|20092987|ref|NP_619062.1| - 5e-29 100.4 0.0 6.1e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|20092988|ref|NP_619063.1| - 8.6e-14 52.0 0.2 1.3e-13 51.4 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20092988|ref|NP_619063.1| - 2.7e-13 49.9 0.0 5.6e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20092988|ref|NP_619063.1| - 2.4e-08 34.2 0.2 4.2e-08 33.4 0.1 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.7 gi|20092989|ref|NP_619064.1| - 5.9e-76 253.8 0.5 6.6e-76 253.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) Tox-PL-2 PF15643.1 gi|20092989|ref|NP_619064.1| - 0.0052 16.7 0.0 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 Papain fold toxin 2 QueC PF06508.8 gi|20092990|ref|NP_619065.1| - 7.2e-59 198.5 0.0 8.2e-59 198.3 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|20092990|ref|NP_619065.1| - 1.4e-05 24.6 0.0 0.00089 18.7 0.0 2.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|20092990|ref|NP_619065.1| - 9.5e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|20092990|ref|NP_619065.1| - 0.00041 19.9 0.0 0.0045 16.5 0.0 2.0 2 0 0 2 2 2 1 PP-loop family NAD_synthase PF02540.12 gi|20092990|ref|NP_619065.1| - 0.11 11.3 0.1 0.24 10.2 0.0 1.6 2 0 0 2 2 2 0 NAD synthase Metallophos_2 PF12850.2 gi|20092991|ref|NP_619066.1| - 1.8e-26 92.8 0.1 2.1e-26 92.6 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20092991|ref|NP_619066.1| - 1.4e-05 24.5 0.7 0.0019 17.6 0.5 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|20092991|ref|NP_619066.1| - 0.0063 15.6 0.2 2.5 7.1 0.0 2.3 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DGC PF08859.6 gi|20092992|ref|NP_619067.1| - 2.6e-26 91.6 0.1 3.4e-26 91.2 0.1 1.1 1 0 0 1 1 1 1 DGC domain Tet_JBP PF12851.2 gi|20092992|ref|NP_619067.1| - 0.038 13.2 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 Oxygenase domain of the 2OGFeDO superfamily Metallophos_2 PF12850.2 gi|20092993|ref|NP_619068.1| - 2.2e-28 99.0 0.0 3e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20092993|ref|NP_619068.1| - 8.5e-13 48.1 0.1 1.2e-12 47.6 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|20092993|ref|NP_619068.1| - 0.049 12.7 0.0 0.8 8.7 0.0 2.1 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily BTD PF09270.5 gi|20092993|ref|NP_619068.1| - 0.095 12.4 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Beta-trefoil DNA-binding domain FBPase_2 PF06874.6 gi|20092993|ref|NP_619068.1| - 0.11 10.5 0.0 0.22 9.5 0.0 1.4 1 1 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase Hydantoinase_A PF01968.13 gi|20092994|ref|NP_619069.1| - 5.4e-85 284.9 1.0 3.7e-84 282.2 0.0 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20092994|ref|NP_619069.1| - 6.5e-43 146.2 0.3 3e-40 137.6 0.0 2.7 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20092994|ref|NP_619069.1| - 2.2e-06 26.2 0.8 0.0046 15.3 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20092994|ref|NP_619069.1| - 0.0059 15.9 0.0 0.31 10.2 0.0 2.8 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family Methyltransf_12 PF08242.7 gi|20092995|ref|NP_619070.1| - 7.9e-16 58.3 0.0 1.2e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20092995|ref|NP_619070.1| - 1.9e-13 50.9 0.0 2.9e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20092995|ref|NP_619070.1| - 5.8e-12 45.8 0.0 1.3e-11 44.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20092995|ref|NP_619070.1| - 1.2e-10 41.1 0.0 1.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20092995|ref|NP_619070.1| - 2.3e-09 37.6 0.0 3.4e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20092995|ref|NP_619070.1| - 2.8e-08 33.6 0.0 3.8e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20092995|ref|NP_619070.1| - 8.6e-06 25.0 0.0 1.4e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20092995|ref|NP_619070.1| - 0.0025 17.8 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain ResIII PF04851.10 gi|20092995|ref|NP_619070.1| - 0.01 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMAS PF02353.15 gi|20092995|ref|NP_619070.1| - 0.014 14.4 0.0 0.017 14.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|20092995|ref|NP_619070.1| - 0.015 14.6 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|20092995|ref|NP_619070.1| - 0.036 13.1 0.0 0.15 11.0 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase ABC2_membrane PF01061.19 gi|20092996|ref|NP_619071.1| - 2.4e-26 92.2 23.5 2.4e-26 92.2 16.3 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|20092996|ref|NP_619071.1| - 1.2e-10 40.9 33.7 1.2e-10 40.9 23.4 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20092996|ref|NP_619071.1| - 0.014 14.5 37.1 0.051 12.7 25.7 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|20092997|ref|NP_619072.1| - 2.6e-35 121.6 0.2 6.6e-35 120.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|20092997|ref|NP_619072.1| - 2.3e-14 54.0 0.4 7.4e-12 45.8 0.1 2.5 2 1 0 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|20092997|ref|NP_619072.1| - 3.6e-10 40.2 1.6 8.1e-10 39.0 0.2 2.3 3 0 0 3 3 2 1 Domain of unknown function (DUF4162) DUF258 PF03193.11 gi|20092997|ref|NP_619072.1| - 4.1e-05 22.8 0.4 8.9e-05 21.7 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|20092997|ref|NP_619072.1| - 0.00037 19.6 4.8 0.097 11.7 1.3 2.5 2 1 1 3 3 3 2 AAA ATPase domain AAA_18 PF13238.1 gi|20092997|ref|NP_619072.1| - 0.001 19.3 1.1 0.46 10.8 0.1 2.4 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|20092997|ref|NP_619072.1| - 0.0013 18.2 0.1 0.0026 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20092997|ref|NP_619072.1| - 0.0013 17.9 0.8 0.0082 15.3 0.4 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20092997|ref|NP_619072.1| - 0.0038 17.5 7.0 0.028 14.7 3.8 2.6 1 1 1 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|20092997|ref|NP_619072.1| - 0.0077 14.7 0.4 0.011 14.1 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20092997|ref|NP_619072.1| - 0.0079 16.3 0.8 0.023 14.8 0.4 1.9 1 1 1 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|20092997|ref|NP_619072.1| - 0.014 15.3 1.7 0.047 13.6 0.9 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|20092997|ref|NP_619072.1| - 0.018 15.0 0.0 0.044 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.10 gi|20092997|ref|NP_619072.1| - 0.049 12.3 0.1 0.067 11.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|20092997|ref|NP_619072.1| - 0.05 13.0 0.5 1.2 8.4 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain Spt5-NGN PF03439.8 gi|20092997|ref|NP_619072.1| - 0.062 13.0 0.0 0.24 11.1 0.0 2.1 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section ACT_4 PF13291.1 gi|20092997|ref|NP_619072.1| - 0.062 13.6 0.7 1.2 9.5 0.0 2.6 2 0 0 2 2 2 0 ACT domain RNA_binding PF01877.12 gi|20092997|ref|NP_619072.1| - 0.092 12.7 1.1 0.64 10.0 0.2 2.3 2 0 0 2 2 2 0 RNA binding Ammonium_transp PF00909.16 gi|20092998|ref|NP_619073.1| - 1e-122 409.4 35.7 1.2e-122 409.1 24.8 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|20092999|ref|NP_619074.1| - 1e-39 135.1 1.7 1.1e-39 134.9 1.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PBP5_C PF07943.8 gi|20092999|ref|NP_619074.1| - 0.0042 17.0 0.9 0.0063 16.4 0.6 1.2 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain DUF2007 PF09413.5 gi|20092999|ref|NP_619074.1| - 0.027 14.2 0.2 0.25 11.2 0.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF2007) DUF1059 PF06348.6 gi|20093003|ref|NP_619078.1| - 3.6e-05 23.4 2.9 5.1e-05 23.0 2.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF832 PF05734.6 gi|20093003|ref|NP_619078.1| - 0.057 12.6 0.1 0.061 12.5 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) Glyco_hydro_4C PF11975.3 gi|20093003|ref|NP_619078.1| - 0.1 12.3 0.1 0.12 12.1 0.1 1.0 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Peptidase_S76 PF13611.1 gi|20093003|ref|NP_619078.1| - 0.11 12.5 0.3 0.14 12.2 0.2 1.1 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 TspO_MBR PF03073.10 gi|20093004|ref|NP_619079.1| - 4.5e-54 181.9 20.0 5.1e-54 181.8 13.9 1.0 1 0 0 1 1 1 1 TspO/MBR family Pox_A14 PF05767.7 gi|20093004|ref|NP_619079.1| - 1.6 8.7 5.3 1.7 8.6 0.3 2.6 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 SAYSvFN PF10260.4 gi|20093005|ref|NP_619080.1| - 0.11 12.2 2.4 0.15 11.8 1.7 1.2 1 0 0 1 1 1 0 Uncharacterized conserved domain (SAYSvFN) Gln-synt_C PF00120.19 gi|20093006|ref|NP_619081.1| - 4.9e-103 343.7 0.0 6.2e-103 343.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|20093006|ref|NP_619081.1| - 1.3e-27 95.2 0.0 3.3e-27 93.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain GATase_2 PF00310.16 gi|20093007|ref|NP_619082.1| - 1.1e-23 83.5 0.0 8.6e-21 74.0 0.0 2.0 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|20093007|ref|NP_619082.1| - 5e-17 62.1 0.0 5.8e-16 58.6 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|20093007|ref|NP_619082.1| - 4.2e-09 36.1 0.0 9.8e-08 31.7 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain Glu_synthase PF01645.12 gi|20093008|ref|NP_619083.1| - 1.6e-134 448.4 0.0 2.1e-134 448.0 0.0 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|20093008|ref|NP_619083.1| - 7.6e-12 44.7 5.0 7.4e-09 34.9 1.6 3.2 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|20093008|ref|NP_619083.1| - 4.1e-10 39.0 0.2 1.3e-07 30.8 0.6 2.9 2 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_syn_central PF04898.9 gi|20093008|ref|NP_619083.1| - 3.6e-09 36.2 0.2 8.2e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4_10 PF13237.1 gi|20093008|ref|NP_619083.1| - 4.4e-09 35.9 21.9 5.1e-07 29.3 8.5 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20093008|ref|NP_619083.1| - 6.1e-09 36.1 16.5 8.4e-06 26.0 9.1 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093008|ref|NP_619083.1| - 4.6e-08 33.2 17.6 1.9e-07 31.2 7.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20093008|ref|NP_619083.1| - 4.4e-07 29.2 23.1 2e-05 23.9 1.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20093008|ref|NP_619083.1| - 1e-06 29.3 10.7 0.00069 20.3 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20093008|ref|NP_619083.1| - 1.5e-06 27.9 8.8 1.5e-06 27.9 6.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20093008|ref|NP_619083.1| - 2e-06 27.3 22.3 1.3e-05 24.8 1.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20093008|ref|NP_619083.1| - 2.1e-06 27.9 7.2 0.09 13.1 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain NMO PF03060.10 gi|20093008|ref|NP_619083.1| - 3.6e-06 26.3 7.8 8.3e-06 25.1 5.4 1.7 1 1 0 1 1 1 1 Nitronate monooxygenase Fer4_8 PF13183.1 gi|20093008|ref|NP_619083.1| - 1.7e-05 24.7 15.1 0.0068 16.4 9.0 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|20093008|ref|NP_619083.1| - 4e-05 22.7 0.6 0.00048 19.1 0.2 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_2 PF12797.2 gi|20093008|ref|NP_619083.1| - 0.00057 19.6 22.9 0.0057 16.5 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain His_biosynth PF00977.16 gi|20093008|ref|NP_619083.1| - 0.00081 18.7 0.2 0.0017 17.6 0.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_18 PF13746.1 gi|20093008|ref|NP_619083.1| - 0.0035 17.7 15.9 0.071 13.5 1.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20093008|ref|NP_619083.1| - 0.018 14.9 5.3 0.018 14.9 3.7 2.1 2 1 0 2 2 1 0 4Fe-4S dicluster domain PcrB PF01884.12 gi|20093008|ref|NP_619083.1| - 0.026 13.7 0.8 0.4 9.8 0.3 2.3 1 1 1 2 2 2 0 PcrB family Fer4_4 PF12800.2 gi|20093008|ref|NP_619083.1| - 0.048 14.0 2.0 0.048 14.0 1.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20093008|ref|NP_619083.1| - 0.83 10.2 18.1 3.5 8.2 8.4 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain GXGXG PF01493.14 gi|20093009|ref|NP_619084.1| - 1.8e-34 118.5 13.4 2.1e-34 118.3 9.3 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|20093010|ref|NP_619085.1| - 8.4e-38 129.3 1.0 9.5e-38 129.1 0.0 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|20093010|ref|NP_619085.1| - 1.8e-20 72.5 0.1 3.9e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|20093010|ref|NP_619085.1| - 3.1e-08 32.8 2.7 3.1e-08 32.8 1.9 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20093010|ref|NP_619085.1| - 7.1e-07 28.8 17.9 8.1e-07 28.6 1.0 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20093010|ref|NP_619085.1| - 1e-06 28.4 8.2 2.4e-06 27.2 5.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093010|ref|NP_619085.1| - 9.9e-06 25.7 8.8 9.9e-06 25.7 6.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20093010|ref|NP_619085.1| - 2.7e-05 24.4 11.3 2.7e-05 24.4 7.8 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20093010|ref|NP_619085.1| - 2.8e-05 24.0 14.3 0.0017 18.5 1.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20093010|ref|NP_619085.1| - 3.1e-05 24.2 1.8 0.021 15.1 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20093010|ref|NP_619085.1| - 4.8e-05 23.0 2.8 4.8e-05 23.0 2.0 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20093010|ref|NP_619085.1| - 7.2e-05 22.7 7.1 0.02 14.9 1.3 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20093010|ref|NP_619085.1| - 0.0014 19.3 13.6 0.0064 17.2 7.4 2.8 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|20093010|ref|NP_619085.1| - 0.0025 18.2 0.4 0.0025 18.2 0.3 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20093010|ref|NP_619085.1| - 0.04 14.4 8.9 0.04 14.4 6.2 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20093010|ref|NP_619085.1| - 0.059 13.7 6.8 0.64 10.4 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF1344 PF07076.6 gi|20093010|ref|NP_619085.1| - 0.081 12.4 0.0 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) Fer4_11 PF13247.1 gi|20093010|ref|NP_619085.1| - 0.18 11.6 4.5 0.24 11.3 2.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20093010|ref|NP_619085.1| - 0.54 10.8 11.2 0.16 12.5 1.9 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|20093010|ref|NP_619085.1| - 0.89 9.4 15.4 0.085 12.7 2.0 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain NosD PF05048.8 gi|20093012|ref|NP_619087.1| - 3e-30 105.1 76.8 1.2e-15 57.2 32.4 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20093012|ref|NP_619087.1| - 2.4e-23 82.6 71.2 3.7e-13 49.5 15.6 2.8 1 1 1 2 2 2 2 Right handed beta helix region Pectinesterase PF01095.14 gi|20093012|ref|NP_619087.1| - 0.0058 15.2 0.8 0.011 14.3 0.6 1.4 1 0 0 1 1 1 1 Pectinesterase UPF0228 PF05727.6 gi|20093013|ref|NP_619088.1| - 2.1e-45 153.5 3.4 3.1e-45 153.0 2.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) DDE_Tnp_IS1 PF03400.8 gi|20093014|ref|NP_619089.1| - 2.1e-13 50.4 0.3 2.4e-13 50.3 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|20093015|ref|NP_619090.1| - 1.6e-06 27.5 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|20093015|ref|NP_619090.1| - 7.9e-06 25.3 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|20093015|ref|NP_619090.1| - 1e-05 25.3 0.1 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|20093015|ref|NP_619090.1| - 0.00067 19.7 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|20093015|ref|NP_619090.1| - 0.0061 16.0 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|20093015|ref|NP_619090.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-Mss51 PF13824.1 gi|20093015|ref|NP_619090.1| - 0.011 15.5 2.9 0.023 14.5 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|20093015|ref|NP_619090.1| - 0.017 14.6 9.3 0.029 13.8 6.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|20093015|ref|NP_619090.1| - 0.02 14.8 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF2387 PF09526.5 gi|20093015|ref|NP_619090.1| - 0.051 13.5 0.7 0.095 12.6 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|20093015|ref|NP_619090.1| - 0.054 13.3 7.4 0.083 12.7 5.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|20093015|ref|NP_619090.1| - 0.079 12.9 2.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|20093015|ref|NP_619090.1| - 0.13 12.2 2.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|20093015|ref|NP_619090.1| - 0.71 8.9 6.0 1.3 8.1 3.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|20093015|ref|NP_619090.1| - 5.3 6.7 6.5 9.1 6.0 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|20093015|ref|NP_619090.1| - 5.6 6.7 7.5 6.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain CMV_1a PF12467.3 gi|20093016|ref|NP_619091.1| - 0.00049 20.5 0.1 0.00062 20.1 0.1 1.1 1 0 0 1 1 1 1 Cucumber mosaic virus 1a protein family GST_N_2 PF13409.1 gi|20093016|ref|NP_619091.1| - 0.084 12.8 0.0 0.39 10.7 0.0 1.9 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain DDE_Tnp_1_6 PF13751.1 gi|20093017|ref|NP_619092.1| - 3.2e-28 98.2 6.4 6.8e-28 97.1 3.9 2.1 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|20093017|ref|NP_619092.1| - 2.8e-19 69.5 0.3 5.6e-19 68.5 0.2 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|20093017|ref|NP_619092.1| - 1e-17 63.7 0.0 3.6e-17 62.0 0.0 2.0 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|20093017|ref|NP_619092.1| - 0.0037 17.4 0.1 0.14 12.3 0.0 2.8 2 0 0 2 2 2 1 Transposase DDE domain AhpC-TSA PF00578.16 gi|20093017|ref|NP_619092.1| - 0.022 14.4 0.4 0.05 13.2 0.3 1.5 1 0 0 1 1 1 0 AhpC/TSA family RVT_N PF13655.1 gi|20093018|ref|NP_619093.1| - 1.1e-30 105.5 3.7 1.8e-30 104.8 2.5 1.4 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_1 PF00078.22 gi|20093018|ref|NP_619093.1| - 8.2e-23 80.8 0.0 1.3e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) MipZ PF09140.6 gi|20093018|ref|NP_619093.1| - 0.11 11.6 1.3 0.15 11.0 0.9 1.2 1 0 0 1 1 1 0 ATPase MipZ PHO4 PF01384.15 gi|20093019|ref|NP_619094.1| - 0.18 10.4 4.7 0.061 11.9 0.3 1.9 1 1 0 2 2 2 0 Phosphate transporter family DUF4271 PF14093.1 gi|20093019|ref|NP_619094.1| - 8.9 5.9 21.5 2.1 7.9 3.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) DUF2393 PF09624.5 gi|20093019|ref|NP_619094.1| - 9.7 5.7 7.5 1.2 8.7 0.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2393) Gly-zipper_OmpA PF13436.1 gi|20093020|ref|NP_619095.1| - 0.0013 18.3 4.3 0.0029 17.2 3.0 1.5 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_YMGG PF13441.1 gi|20093020|ref|NP_619095.1| - 0.0018 17.7 17.1 0.0032 16.9 11.9 1.3 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|20093020|ref|NP_619095.1| - 0.0041 16.7 16.2 0.0078 15.8 11.2 1.4 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|20093020|ref|NP_619095.1| - 0.53 9.9 18.0 1.1 8.9 12.4 1.5 1 0 0 1 1 1 0 Glycine zipper 2TM domain End_N_terminal PF12218.3 gi|20093021|ref|NP_619096.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.4 2 0 0 2 2 2 0 N terminal extension of bacteriophage endosialidase Peptidase_M24 PF00557.19 gi|20093022|ref|NP_619097.1| - 3.9e-37 127.8 0.0 5.3e-37 127.4 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|20093022|ref|NP_619097.1| - 1.1e-12 48.5 0.0 1.7e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF2284 PF10050.4 gi|20093023|ref|NP_619098.1| - 4.3e-46 156.5 2.0 4.9e-46 156.3 1.4 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Peptidase_S8 PF00082.17 gi|20093024|ref|NP_619099.1| - 1.4e-21 76.8 0.5 2.3e-19 69.6 0.3 2.2 1 1 0 1 1 1 1 Subtilase family Aegerolysin PF06355.8 gi|20093024|ref|NP_619099.1| - 0.025 14.4 0.1 0.072 12.9 0.1 1.8 1 0 0 1 1 1 0 Aegerolysin F420_oxidored PF03807.12 gi|20093025|ref|NP_619100.1| - 7.6e-21 74.3 0.1 1.5e-20 73.4 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|20093025|ref|NP_619100.1| - 0.0027 17.8 0.1 0.069 13.2 0.0 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Ldh_1_N PF00056.18 gi|20093025|ref|NP_619100.1| - 0.0028 17.4 0.2 0.0051 16.6 0.2 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|20093025|ref|NP_619100.1| - 0.0076 15.2 0.1 0.01 14.8 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DXP_reductoisom PF02670.11 gi|20093025|ref|NP_619100.1| - 0.32 11.5 2.3 22 5.5 0.0 2.7 2 1 1 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Fer4_8 PF13183.1 gi|20093026|ref|NP_619101.1| - 4.2e-14 52.2 6.6 6.9e-14 51.6 4.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20093026|ref|NP_619101.1| - 1.5e-10 41.2 6.8 2.3e-10 40.6 4.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093026|ref|NP_619101.1| - 2.2e-08 34.2 5.2 2.1e-07 31.1 4.4 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20093026|ref|NP_619101.1| - 4.8e-08 32.6 5.1 9.6e-08 31.7 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20093026|ref|NP_619101.1| - 1.8e-07 31.4 7.8 2.6e-07 30.9 4.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20093026|ref|NP_619101.1| - 1e-05 25.1 10.0 0.0062 16.3 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20093026|ref|NP_619101.1| - 4.1e-05 23.9 9.8 0.0026 18.1 0.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20093026|ref|NP_619101.1| - 7e-05 22.5 4.6 0.00014 21.6 3.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20093026|ref|NP_619101.1| - 8e-05 22.0 11.3 0.01 15.4 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20093026|ref|NP_619101.1| - 0.005 17.0 10.2 0.042 14.2 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20093026|ref|NP_619101.1| - 0.032 14.7 16.4 0.17 12.4 2.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20093026|ref|NP_619101.1| - 0.078 13.7 13.3 2.9 8.7 9.5 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|20093026|ref|NP_619101.1| - 0.28 11.1 11.8 0.48 10.3 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20093026|ref|NP_619101.1| - 0.28 11.7 6.7 1 9.9 0.9 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|20093026|ref|NP_619101.1| - 2 8.0 4.9 1.3 8.6 0.1 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|20093026|ref|NP_619101.1| - 5.3 7.5 9.6 13 6.2 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain CCG PF02754.11 gi|20093027|ref|NP_619102.1| - 4e-33 113.2 3.6 1.4e-18 66.6 1.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Prok-RING_4 PF14447.1 gi|20093027|ref|NP_619102.1| - 0.042 13.4 1.2 0.074 12.6 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF1284 PF06935.6 gi|20093028|ref|NP_619103.1| - 2.8e-27 94.8 0.6 3.9e-27 94.4 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) DDE_Tnp_1_6 PF13751.1 gi|20093028|ref|NP_619103.1| - 0.14 12.1 3.5 2.3 8.2 0.2 2.2 2 0 0 2 2 2 0 Transposase DDE domain Whib PF02467.11 gi|20093028|ref|NP_619103.1| - 0.3 11.4 2.9 14 6.0 0.3 2.4 2 0 0 2 2 2 0 Transcription factor WhiB Rdx PF10262.4 gi|20093028|ref|NP_619103.1| - 1.2 9.1 4.7 0.51 10.3 0.9 2.0 2 1 0 2 2 2 0 Rdx family DUF1847 PF08901.6 gi|20093029|ref|NP_619104.1| - 1.1e-50 171.2 0.4 1.3e-50 171.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) DUF169 PF02596.10 gi|20093030|ref|NP_619105.1| - 9.7e-66 221.2 0.0 1.1e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 CbiA PF01656.18 gi|20093031|ref|NP_619106.1| - 1.3e-24 86.7 0.0 1.7e-24 86.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_7 PF12838.2 gi|20093031|ref|NP_619106.1| - 2e-07 31.2 8.8 0.0034 17.7 0.8 3.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20093031|ref|NP_619106.1| - 2.7e-07 30.2 9.4 4.7e-07 29.5 5.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20093031|ref|NP_619106.1| - 3.7e-07 29.6 16.2 0.0017 18.1 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20093031|ref|NP_619106.1| - 7.6e-07 28.7 15.3 0.00094 18.9 0.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20093031|ref|NP_619106.1| - 7.7e-07 28.4 1.4 7.7e-07 28.4 1.0 3.7 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|20093031|ref|NP_619106.1| - 1.4e-06 27.7 0.5 0.00016 20.9 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_16 PF13484.1 gi|20093031|ref|NP_619106.1| - 0.00031 21.4 9.3 0.14 12.9 0.9 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain AAA_19 PF13245.1 gi|20093031|ref|NP_619106.1| - 0.00069 19.3 0.3 0.94 9.2 0.0 2.6 2 0 0 2 2 2 2 Part of AAA domain ParA PF10609.4 gi|20093031|ref|NP_619106.1| - 0.00078 19.2 0.0 0.0018 18.1 0.0 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like Fer4_4 PF12800.2 gi|20093031|ref|NP_619106.1| - 0.0017 18.5 16.3 0.082 13.2 1.7 3.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20093031|ref|NP_619106.1| - 0.0019 18.4 14.4 0.0057 16.8 9.6 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20093031|ref|NP_619106.1| - 0.0027 17.6 14.1 0.23 11.5 9.1 2.8 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20093031|ref|NP_619106.1| - 0.018 15.6 11.7 0.28 11.7 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain FTHFS PF01268.14 gi|20093031|ref|NP_619106.1| - 0.024 12.6 0.0 0.035 12.1 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase ArsA_ATPase PF02374.10 gi|20093031|ref|NP_619106.1| - 0.026 13.5 0.8 0.057 12.4 0.6 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_16 PF13191.1 gi|20093031|ref|NP_619106.1| - 0.039 13.9 0.1 0.24 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|20093031|ref|NP_619106.1| - 0.05 14.4 1.2 1.7 9.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|20093031|ref|NP_619106.1| - 0.069 12.5 0.2 0.52 9.6 0.2 2.0 2 0 0 2 2 2 0 AAA domain Fer4_21 PF14697.1 gi|20093031|ref|NP_619106.1| - 0.077 12.8 21.1 0.29 11.0 3.0 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain YhjQ PF06564.7 gi|20093031|ref|NP_619106.1| - 0.095 12.0 0.0 5.5 6.2 0.0 2.2 2 0 0 2 2 2 0 YhjQ protein AAA_22 PF13401.1 gi|20093031|ref|NP_619106.1| - 0.097 12.8 0.1 1.7 8.8 0.0 2.5 3 0 0 3 3 2 0 AAA domain ABC_tran PF00005.22 gi|20093031|ref|NP_619106.1| - 0.15 12.3 0.2 0.31 11.3 0.1 1.5 1 0 0 1 1 1 0 ABC transporter Fer4_17 PF13534.1 gi|20093031|ref|NP_619106.1| - 0.28 11.5 14.2 0.8 10.1 1.3 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20093031|ref|NP_619106.1| - 0.29 11.7 23.3 0.14 12.8 2.8 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain AAA_29 PF13555.1 gi|20093031|ref|NP_619106.1| - 0.36 10.3 1.8 1.1 8.8 0.3 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain Fer4_13 PF13370.1 gi|20093031|ref|NP_619106.1| - 0.47 10.8 13.8 1.4 9.3 2.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|20093031|ref|NP_619106.1| - 2.6 8.5 17.8 0.58 10.6 1.6 3.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain CbiA PF01656.18 gi|20093032|ref|NP_619107.1| - 1.8e-27 96.0 0.0 2.5e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|20093032|ref|NP_619107.1| - 9.4e-10 37.6 10.7 7.9e-06 25.2 1.1 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20093032|ref|NP_619107.1| - 3.7e-08 33.6 8.7 0.0053 17.1 2.1 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20093032|ref|NP_619107.1| - 6.2e-08 32.1 8.7 1.8e-05 24.3 0.5 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20093032|ref|NP_619107.1| - 2e-06 27.4 15.0 2.1e-05 24.2 5.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20093032|ref|NP_619107.1| - 3.5e-06 26.7 4.7 1.1e-05 25.1 3.2 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20093032|ref|NP_619107.1| - 0.00069 20.3 12.8 0.0048 17.6 1.6 2.8 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|20093032|ref|NP_619107.1| - 0.00086 19.5 13.7 0.089 13.0 2.4 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|20093032|ref|NP_619107.1| - 0.0011 18.4 0.1 0.0035 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|20093032|ref|NP_619107.1| - 0.0011 18.9 0.1 0.051 13.4 0.0 2.7 2 1 1 3 3 3 1 AAA domain Fer4_2 PF12797.2 gi|20093032|ref|NP_619107.1| - 0.0015 18.3 0.7 0.0015 18.3 0.5 3.5 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20093032|ref|NP_619107.1| - 0.0015 18.8 8.5 0.047 14.0 0.3 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|20093032|ref|NP_619107.1| - 0.0018 18.0 0.1 0.061 13.0 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain Fer4_NifH PF00142.13 gi|20093032|ref|NP_619107.1| - 0.0027 16.9 0.0 0.29 10.2 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_8 PF13183.1 gi|20093032|ref|NP_619107.1| - 0.0034 17.3 12.7 0.029 14.3 1.1 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|20093032|ref|NP_619107.1| - 0.0056 15.7 0.3 0.01 14.9 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|20093032|ref|NP_619107.1| - 0.011 15.3 0.0 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|20093032|ref|NP_619107.1| - 0.012 14.7 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ DUF2075 PF09848.4 gi|20093032|ref|NP_619107.1| - 0.076 11.9 0.0 0.098 11.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|20093032|ref|NP_619107.1| - 0.091 11.9 0.2 0.14 11.3 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|20093032|ref|NP_619107.1| - 0.1 13.3 0.0 0.18 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20093032|ref|NP_619107.1| - 0.13 12.5 0.0 1.1 9.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.2 gi|20093032|ref|NP_619107.1| - 0.27 11.6 20.1 0.24 11.8 2.3 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20093032|ref|NP_619107.1| - 0.34 11.3 9.1 0.66 10.4 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20093032|ref|NP_619107.1| - 0.9 10.1 10.1 1.8 9.1 0.8 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20093032|ref|NP_619107.1| - 9.1 7.1 28.3 0.1 13.1 5.2 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.12 gi|20093033|ref|NP_619108.1| - 1.7e-17 63.2 0.0 2.5e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|20093034|ref|NP_619109.1| - 4.7e-18 65.0 0.0 5.8e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF134 PF02001.11 gi|20093035|ref|NP_619110.1| - 3.6e-27 94.3 0.1 4.1e-27 94.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|20093035|ref|NP_619110.1| - 0.0017 17.8 0.1 0.0025 17.2 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|20093035|ref|NP_619110.1| - 0.003 17.1 0.1 0.0044 16.6 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|20093035|ref|NP_619110.1| - 0.0044 16.7 0.3 0.0068 16.1 0.2 1.3 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.11 gi|20093035|ref|NP_619110.1| - 0.081 12.2 0.2 0.12 11.6 0.2 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|20093035|ref|NP_619110.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|20093035|ref|NP_619110.1| - 0.16 11.5 0.4 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain ParA PF10609.4 gi|20093036|ref|NP_619111.1| - 9.7e-32 108.7 0.2 1.6e-31 108.0 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|20093036|ref|NP_619111.1| - 1.1e-22 80.4 0.0 1.5e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|20093036|ref|NP_619111.1| - 1.3e-09 38.1 0.0 2.1e-07 30.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|20093036|ref|NP_619111.1| - 2.3e-07 30.1 0.1 7e-07 28.5 0.0 1.9 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|20093036|ref|NP_619111.1| - 8e-07 28.3 0.0 1.4e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|20093036|ref|NP_619111.1| - 2.2e-06 27.0 0.1 0.00015 21.0 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|20093036|ref|NP_619111.1| - 1.2e-05 24.8 0.0 2.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|20093036|ref|NP_619111.1| - 0.0036 16.1 0.1 0.0058 15.4 0.1 1.3 1 0 0 1 1 1 1 ArgK protein DUF258 PF03193.11 gi|20093036|ref|NP_619111.1| - 0.0043 16.2 0.0 0.0086 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|20093036|ref|NP_619111.1| - 0.0054 16.2 0.2 0.01 15.2 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain YhjQ PF06564.7 gi|20093036|ref|NP_619111.1| - 0.0059 15.9 0.1 0.84 8.9 0.2 2.1 2 0 0 2 2 2 1 YhjQ protein APS_kinase PF01583.15 gi|20093036|ref|NP_619111.1| - 0.01 15.4 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.17 gi|20093036|ref|NP_619111.1| - 0.011 15.2 0.1 0.019 14.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|20093036|ref|NP_619111.1| - 0.012 15.3 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|20093036|ref|NP_619111.1| - 0.019 13.8 0.2 0.041 12.7 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_26 PF13500.1 gi|20093036|ref|NP_619111.1| - 0.025 14.1 1.1 0.74 9.3 0.1 2.4 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20093036|ref|NP_619111.1| - 0.04 14.0 0.1 2.3 8.4 0.1 2.2 2 0 0 2 2 2 0 RNA helicase AAA_19 PF13245.1 gi|20093036|ref|NP_619111.1| - 0.055 13.2 2.0 0.92 9.3 0.1 2.6 2 1 0 2 2 2 0 Part of AAA domain VirC1 PF07015.6 gi|20093036|ref|NP_619111.1| - 0.073 12.1 0.1 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein IstB_IS21 PF01695.12 gi|20093036|ref|NP_619111.1| - 0.094 12.1 0.1 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|20093036|ref|NP_619111.1| - 0.11 13.2 0.1 0.3 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|20093036|ref|NP_619111.1| - 0.13 11.4 0.0 0.47 9.6 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.1 gi|20093036|ref|NP_619111.1| - 0.13 11.7 0.1 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SBP_bac_5 PF00496.17 gi|20093037|ref|NP_619112.1| - 1.1e-92 310.7 0.0 1.4e-92 310.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.7 gi|20093038|ref|NP_619113.1| - 2.9e-24 85.3 0.0 4.9e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093038|ref|NP_619113.1| - 1.1e-20 73.7 0.0 1.7e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093038|ref|NP_619113.1| - 2.6e-16 59.4 0.0 3.6e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20093038|ref|NP_619113.1| - 7.7e-16 58.3 0.0 1.4e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093038|ref|NP_619113.1| - 3.5e-15 56.0 0.0 4.9e-15 55.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093038|ref|NP_619113.1| - 1.4e-14 54.6 0.0 2.5e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20093038|ref|NP_619113.1| - 6.3e-11 42.3 0.1 3.9e-10 39.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093038|ref|NP_619113.1| - 1.9e-10 41.1 0.0 2.9e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093038|ref|NP_619113.1| - 1e-08 34.7 0.0 1.6e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20093038|ref|NP_619113.1| - 1.9e-06 27.5 0.0 3.2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20093038|ref|NP_619113.1| - 5e-06 25.8 0.0 6.8e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|20093038|ref|NP_619113.1| - 0.00019 20.8 0.0 0.0003 20.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|20093038|ref|NP_619113.1| - 0.00019 20.5 0.0 0.00028 20.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|20093038|ref|NP_619113.1| - 0.00035 20.1 0.0 0.00051 19.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|20093038|ref|NP_619113.1| - 0.00085 19.0 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|20093038|ref|NP_619113.1| - 0.0056 15.8 0.0 0.0082 15.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|20093038|ref|NP_619113.1| - 0.0057 16.0 0.0 0.0074 15.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) 3HCDH_N PF02737.13 gi|20093038|ref|NP_619113.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPMT PF05724.6 gi|20093038|ref|NP_619113.1| - 0.057 12.8 0.0 0.13 11.7 0.0 1.6 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) GidB PF02527.10 gi|20093038|ref|NP_619113.1| - 0.061 12.4 0.0 0.12 11.4 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G FtsJ PF01728.14 gi|20093038|ref|NP_619113.1| - 0.15 12.0 0.0 0.55 10.1 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase Fer4_16 PF13484.1 gi|20093039|ref|NP_619114.1| - 1.7e-09 38.3 11.1 3.1e-09 37.4 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|20093039|ref|NP_619114.1| - 2e-06 28.0 9.4 4.6e-06 26.9 6.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20093039|ref|NP_619114.1| - 0.00013 21.6 11.7 0.00084 19.0 8.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20093039|ref|NP_619114.1| - 0.00022 20.6 17.7 0.00068 19.1 2.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain EspA PF03433.8 gi|20093039|ref|NP_619114.1| - 0.00056 19.3 0.0 0.0028 17.1 0.1 1.8 2 0 0 2 2 2 1 EspA-like secreted protein Fer4_8 PF13183.1 gi|20093039|ref|NP_619114.1| - 0.0012 18.7 8.8 0.05 13.6 3.1 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20093039|ref|NP_619114.1| - 0.0013 19.0 5.5 0.018 15.4 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20093039|ref|NP_619114.1| - 0.0038 17.0 3.2 0.0038 17.0 2.2 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20093039|ref|NP_619114.1| - 0.018 15.2 13.8 0.041 14.1 1.8 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20093039|ref|NP_619114.1| - 0.24 11.7 12.4 3.8 7.9 2.3 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|20093039|ref|NP_619114.1| - 0.51 11.0 19.2 1 10.0 0.5 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20093039|ref|NP_619114.1| - 1.2 9.1 18.3 0.96 9.5 3.2 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20093039|ref|NP_619114.1| - 2.4 8.6 13.9 5.8 7.5 0.9 2.9 2 1 1 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|20093039|ref|NP_619114.1| - 4.9 7.0 12.4 0.54 10.1 1.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain BPD_transp_1 PF00528.17 gi|20093040|ref|NP_619115.1| - 3.6e-49 166.8 8.1 3.6e-49 166.8 5.6 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|20093041|ref|NP_619116.1| - 2.1e-24 86.0 9.3 2.1e-24 86.0 6.5 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20093041|ref|NP_619116.1| - 4.5e-06 25.9 0.3 4.5e-06 25.9 0.2 2.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|20093042|ref|NP_619117.1| - 7.3e-24 84.6 0.0 1e-23 84.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20093042|ref|NP_619117.1| - 3.9e-15 55.9 0.4 7.2e-15 55.0 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20093042|ref|NP_619117.1| - 7.6e-13 49.0 2.2 6.7e-11 42.6 1.5 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20093042|ref|NP_619117.1| - 2e-06 27.1 0.1 5.1e-06 25.8 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20093042|ref|NP_619117.1| - 0.0076 16.2 0.4 0.03 14.3 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|20093042|ref|NP_619117.1| - 0.02 15.2 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|20093042|ref|NP_619117.1| - 0.026 14.6 0.5 0.1 12.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|20093042|ref|NP_619117.1| - 0.039 13.4 0.1 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|20093042|ref|NP_619117.1| - 0.041 13.2 0.0 0.36 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|20093042|ref|NP_619117.1| - 0.083 12.0 0.0 2 7.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|20093042|ref|NP_619117.1| - 0.12 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|20093042|ref|NP_619117.1| - 0.23 10.4 0.0 0.3 10.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) zf-CCCH_2 PF14608.1 gi|20093042|ref|NP_619117.1| - 9.9 6.3 10.6 0.22 11.5 2.2 2.1 2 1 0 2 2 1 0 Zinc finger C-x8-C-x5-C-x3-H type ABC_tran PF00005.22 gi|20093043|ref|NP_619118.1| - 4.3e-31 108.0 0.0 5.8e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20093043|ref|NP_619118.1| - 8.5e-13 48.4 0.1 1.5e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20093043|ref|NP_619118.1| - 6.1e-10 39.5 0.6 9.9e-07 28.9 0.2 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20093043|ref|NP_619118.1| - 3.2e-07 29.7 0.4 2.6e-06 26.8 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|20093043|ref|NP_619118.1| - 0.00021 21.4 0.2 0.22 11.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|20093043|ref|NP_619118.1| - 0.0049 16.8 0.3 0.019 14.9 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|20093043|ref|NP_619118.1| - 0.022 13.8 0.0 1.8 7.5 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|20093043|ref|NP_619118.1| - 0.027 13.9 0.1 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|20093043|ref|NP_619118.1| - 0.03 13.5 0.6 0.058 12.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|20093043|ref|NP_619118.1| - 0.044 13.9 0.9 0.95 9.6 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|20093043|ref|NP_619118.1| - 0.11 11.9 0.0 0.25 10.7 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Thioredoxin PF00085.15 gi|20093044|ref|NP_619119.1| - 3.6e-16 58.7 0.0 5e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|20093044|ref|NP_619119.1| - 0.00027 20.8 0.0 0.00055 19.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|20093044|ref|NP_619119.1| - 0.0012 18.9 0.0 0.0025 17.8 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|20093044|ref|NP_619119.1| - 0.0046 17.1 0.0 0.0081 16.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_6 PF13848.1 gi|20093044|ref|NP_619119.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Redoxin PF08534.5 gi|20093044|ref|NP_619119.1| - 0.01 15.3 0.1 0.022 14.2 0.0 1.6 1 1 1 2 2 2 0 Redoxin TraF PF13728.1 gi|20093044|ref|NP_619119.1| - 0.014 14.9 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_3 PF13192.1 gi|20093044|ref|NP_619119.1| - 0.022 14.5 0.1 0.18 11.6 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|20093044|ref|NP_619119.1| - 0.033 13.7 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin DUF836 PF05768.9 gi|20093044|ref|NP_619119.1| - 0.04 14.1 0.0 0.061 13.6 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FliC PF12445.3 gi|20093044|ref|NP_619119.1| - 0.062 13.4 0.2 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Flagellin protein DIM1 PF02966.11 gi|20093044|ref|NP_619119.1| - 0.063 12.8 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Mitosis protein DIM1 NIL PF09383.5 gi|20093044|ref|NP_619119.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 NIL domain AhpC-TSA PF00578.16 gi|20093044|ref|NP_619119.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA family Glutaredoxin PF00462.19 gi|20093044|ref|NP_619119.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin DsbD PF02683.10 gi|20093045|ref|NP_619120.1| - 6.4e-40 137.0 23.2 7.5e-40 136.7 16.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|20093045|ref|NP_619120.1| - 1.9e-13 50.6 24.3 2.8e-13 50.0 16.9 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MerE PF05052.7 gi|20093045|ref|NP_619120.1| - 0.17 11.8 0.3 0.17 11.8 0.2 3.0 1 1 2 3 3 3 0 MerE protein Cas_Csx8 PF09657.5 gi|20093046|ref|NP_619121.1| - 0.0085 14.8 0.2 0.01 14.5 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Csx8 (Cas_Csx8) PgaD PF13994.1 gi|20093046|ref|NP_619121.1| - 0.069 12.6 0.1 0.45 10.0 0.0 2.0 2 0 0 2 2 2 0 PgaD-like protein OppC_N PF12911.2 gi|20093046|ref|NP_619121.1| - 0.07 12.5 0.3 0.11 11.8 0.2 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C FlaA PF04620.7 gi|20093046|ref|NP_619121.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Flagellar filament outer layer protein Flaa G10 PF01125.12 gi|20093047|ref|NP_619122.1| - 0.11 12.0 0.1 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 G10 protein CbiC PF02570.10 gi|20093048|ref|NP_619123.1| - 1.2e-61 207.6 0.8 1.4e-61 207.3 0.5 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase Reductase_C PF14759.1 gi|20093048|ref|NP_619123.1| - 0.081 13.2 0.1 4.2 7.7 0.0 2.7 3 0 0 3 3 3 0 Reductase C-terminal TP_methylase PF00590.15 gi|20093049|ref|NP_619124.1| - 3.6e-34 118.3 0.3 4.2e-34 118.0 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DAGK_cat PF00781.19 gi|20093049|ref|NP_619124.1| - 0.026 13.9 0.1 1.1 8.7 0.1 2.2 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain PGM_PMM_II PF02879.11 gi|20093049|ref|NP_619124.1| - 0.074 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP_methylase PF00590.15 gi|20093050|ref|NP_619125.1| - 1.2e-42 146.0 0.2 1.4e-42 145.8 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|20093050|ref|NP_619125.1| - 0.024 14.8 0.2 0.1 12.7 0.1 1.9 1 1 0 1 1 1 0 Radical SAM superfamily TP_methylase PF00590.15 gi|20093051|ref|NP_619126.1| - 1.4e-32 113.1 0.0 3.4e-32 111.8 0.0 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|20093052|ref|NP_619127.1| - 3e-11 43.8 0.1 3.7e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093052|ref|NP_619127.1| - 7.2e-11 41.8 0.1 8.3e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093052|ref|NP_619127.1| - 8.8e-10 38.2 0.1 1.4e-09 37.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|20093052|ref|NP_619127.1| - 4.4e-07 29.6 0.1 7.4e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|20093052|ref|NP_619127.1| - 1.4e-06 28.6 0.0 2.2e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093052|ref|NP_619127.1| - 1.2e-05 25.7 0.1 2e-05 24.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20093052|ref|NP_619127.1| - 1.2e-05 25.2 0.0 1.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|20093052|ref|NP_619127.1| - 1.6e-05 24.2 0.2 2.5e-05 23.5 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|20093052|ref|NP_619127.1| - 3.3e-05 23.1 0.2 4.2e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|20093052|ref|NP_619127.1| - 3.4e-05 23.4 0.4 0.0002 20.9 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|20093052|ref|NP_619127.1| - 5.9e-05 22.2 0.0 6.5e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|20093052|ref|NP_619127.1| - 6e-05 22.1 0.0 9.1e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|20093052|ref|NP_619127.1| - 0.00019 21.8 0.0 0.00029 21.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|20093052|ref|NP_619127.1| - 0.00068 19.2 0.0 0.00085 18.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Cons_hypoth95 PF03602.10 gi|20093052|ref|NP_619127.1| - 0.0014 18.0 0.2 0.0018 17.6 0.1 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|20093052|ref|NP_619127.1| - 0.0022 17.3 0.0 0.0047 16.2 0.0 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 GidB PF02527.10 gi|20093052|ref|NP_619127.1| - 0.0053 15.9 0.2 0.0069 15.5 0.1 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_23 PF13489.1 gi|20093052|ref|NP_619127.1| - 0.0075 15.9 0.0 0.0098 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|20093052|ref|NP_619127.1| - 0.027 14.0 0.3 0.23 11.0 0.0 2.0 2 0 0 2 2 2 0 Met-10+ like-protein DUF633 PF04816.7 gi|20093052|ref|NP_619127.1| - 0.047 13.0 0.1 0.061 12.6 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF633) HMGL-like PF00682.14 gi|20093053|ref|NP_619128.1| - 4.6e-32 111.5 0.0 6.7e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.15 gi|20093054|ref|NP_619129.1| - 5.6e-83 278.7 0.0 6.8e-83 278.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_CG PF14542.1 gi|20093054|ref|NP_619129.1| - 0.053 13.4 0.0 0.47 10.3 0.0 2.2 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase TatD_DNase PF01026.16 gi|20093055|ref|NP_619130.1| - 9.7e-26 90.4 0.0 1.2e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase HTH_3 PF01381.17 gi|20093056|ref|NP_619131.1| - 6.8e-10 38.6 0.9 1e-09 38.1 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|20093056|ref|NP_619131.1| - 3.8e-08 33.2 0.5 3.8e-08 33.2 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|20093056|ref|NP_619131.1| - 4.5e-07 29.9 0.0 6.8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|20093056|ref|NP_619131.1| - 9.6e-06 25.1 0.6 1.5e-05 24.5 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|20093056|ref|NP_619131.1| - 0.025 14.7 2.3 0.059 13.5 1.6 1.6 1 0 0 1 1 1 0 Archaeal TRASH domain POTRA_1 PF08478.5 gi|20093056|ref|NP_619131.1| - 0.029 14.3 0.4 0.057 13.4 0.3 1.6 1 0 0 1 1 1 0 POTRA domain, FtsQ-type HTH_37 PF13744.1 gi|20093056|ref|NP_619131.1| - 0.051 13.3 0.2 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.24 gi|20093057|ref|NP_619132.1| - 2.8e-44 150.5 0.5 2e-43 147.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|20093057|ref|NP_619132.1| - 8.6e-09 35.2 0.8 2.7e-08 33.6 0.1 2.2 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|20093057|ref|NP_619132.1| - 1.1e-06 28.7 0.4 1.1e-05 25.5 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|20093057|ref|NP_619132.1| - 1.7e-06 27.1 0.0 3.5e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|20093057|ref|NP_619132.1| - 9.5e-06 25.6 0.5 2.4e-05 24.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|20093057|ref|NP_619132.1| - 8.9e-05 22.6 2.6 0.0018 18.3 0.4 2.8 2 1 0 2 2 2 1 AAA domain Filament PF00038.16 gi|20093057|ref|NP_619132.1| - 0.0003 20.3 1.5 0.0003 20.3 1.1 1.7 2 0 0 2 2 1 1 Intermediate filament protein AAA_19 PF13245.1 gi|20093057|ref|NP_619132.1| - 0.0004 20.0 0.4 0.0013 18.4 0.3 1.8 1 1 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|20093057|ref|NP_619132.1| - 0.00047 19.2 0.0 0.0011 18.0 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|20093057|ref|NP_619132.1| - 0.00057 20.6 0.0 0.0019 18.9 0.0 1.9 2 0 0 2 2 1 1 AAA domain KaiC PF06745.8 gi|20093057|ref|NP_619132.1| - 0.0015 17.6 2.3 0.12 11.4 0.0 3.1 2 1 1 3 3 3 1 KaiC CCDC144C PF14915.1 gi|20093057|ref|NP_619132.1| - 0.0028 16.6 2.7 0.005 15.7 1.9 1.3 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region AAA_28 PF13521.1 gi|20093057|ref|NP_619132.1| - 0.0035 17.3 0.0 0.0069 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|20093057|ref|NP_619132.1| - 0.0037 17.1 0.0 0.012 15.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain Phage_GP20 PF06810.6 gi|20093057|ref|NP_619132.1| - 0.0044 16.4 1.8 0.032 13.6 0.0 2.3 2 0 0 2 2 2 1 Phage minor structural protein GP20 AAA_3 PF07726.6 gi|20093057|ref|NP_619132.1| - 0.0047 16.5 0.0 0.0095 15.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Tropomyosin_1 PF12718.2 gi|20093057|ref|NP_619132.1| - 0.0062 16.3 3.9 0.0062 16.3 2.7 1.8 2 0 0 2 2 1 1 Tropomyosin like AAA_33 PF13671.1 gi|20093057|ref|NP_619132.1| - 0.0065 16.3 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|20093057|ref|NP_619132.1| - 0.0069 15.8 1.4 0.48 9.8 0.1 2.9 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|20093057|ref|NP_619132.1| - 0.01 15.2 0.3 0.032 13.6 0.0 1.9 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|20093057|ref|NP_619132.1| - 0.011 16.0 2.1 0.024 14.9 0.0 2.5 3 1 0 3 3 2 0 AAA domain Sipho_Gp157 PF05565.6 gi|20093057|ref|NP_619132.1| - 0.015 14.8 1.5 4.8 6.7 0.1 3.3 3 0 0 3 3 3 0 Siphovirus Gp157 ADIP PF11559.3 gi|20093057|ref|NP_619132.1| - 0.016 15.0 1.5 0.034 14.0 1.1 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Zeta_toxin PF06414.7 gi|20093057|ref|NP_619132.1| - 0.017 14.2 0.8 0.036 13.1 0.0 1.9 2 1 0 2 2 2 0 Zeta toxin Sigma54_activat PF00158.21 gi|20093057|ref|NP_619132.1| - 0.019 14.4 0.1 0.46 9.9 0.0 2.5 2 1 0 2 2 2 0 Sigma-54 interaction domain TIP49 PF06068.8 gi|20093057|ref|NP_619132.1| - 0.019 13.6 0.0 0.032 12.9 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|20093057|ref|NP_619132.1| - 0.027 14.5 0.0 0.28 11.2 0.0 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain APG6 PF04111.7 gi|20093057|ref|NP_619132.1| - 0.032 13.2 0.4 0.065 12.2 0.3 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 bZIP_2 PF07716.10 gi|20093057|ref|NP_619132.1| - 0.042 13.6 0.4 0.042 13.6 0.3 2.9 2 1 1 3 3 2 0 Basic region leucine zipper Tektin PF03148.9 gi|20093057|ref|NP_619132.1| - 0.051 12.1 5.4 0.037 12.5 1.7 2.0 2 0 0 2 2 2 0 Tektin family Mg_chelatase PF01078.16 gi|20093057|ref|NP_619132.1| - 0.059 12.5 0.0 0.16 11.0 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|20093057|ref|NP_619132.1| - 0.064 12.9 3.3 0.66 9.6 0.1 2.9 2 1 0 2 2 2 0 Archaeal ATPase NB-ARC PF00931.17 gi|20093057|ref|NP_619132.1| - 0.077 11.8 0.0 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|20093057|ref|NP_619132.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.14 gi|20093057|ref|NP_619132.1| - 0.11 10.3 0.8 0.14 10.0 0.6 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CCDC155 PF14662.1 gi|20093057|ref|NP_619132.1| - 0.16 11.5 5.5 0.88 9.1 2.8 2.4 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 ABC_tran PF00005.22 gi|20093057|ref|NP_619132.1| - 0.22 11.8 1.2 3.6 7.8 0.0 2.7 3 1 0 3 3 2 0 ABC transporter Nsp1_C PF05064.8 gi|20093057|ref|NP_619132.1| - 0.36 10.4 2.6 0.99 9.0 1.8 1.7 1 0 0 1 1 1 0 Nsp1-like C-terminal region IncA PF04156.9 gi|20093057|ref|NP_619132.1| - 0.61 9.6 6.6 0.56 9.7 2.3 2.1 2 0 0 2 2 2 0 IncA protein Spc7 PF08317.6 gi|20093057|ref|NP_619132.1| - 1.2 7.6 7.5 0.63 8.6 2.3 2.4 2 1 0 3 3 3 0 Spc7 kinetochore protein TMF_TATA_bd PF12325.3 gi|20093057|ref|NP_619132.1| - 2.6 7.7 9.5 1.3 8.7 2.6 2.9 3 0 0 3 3 2 0 TATA element modulatory factor 1 TATA binding CENP-F_leu_zip PF10473.4 gi|20093057|ref|NP_619132.1| - 5 6.9 12.0 0.24 11.2 3.7 2.2 3 0 0 3 3 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V-SNARE PF05008.10 gi|20093057|ref|NP_619132.1| - 7 6.8 10.4 1 9.5 4.1 2.0 2 0 0 2 2 1 0 Vesicle transport v-SNARE protein N-terminus DUF99 PF01949.11 gi|20093058|ref|NP_619133.1| - 4.7e-73 244.2 0.2 5.3e-73 244.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Tubulin PF00091.20 gi|20093060|ref|NP_619135.1| - 2.3e-35 122.3 1.0 8.9e-35 120.4 0.7 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|20093060|ref|NP_619135.1| - 5.3e-35 119.3 0.8 1.7e-34 117.7 0.6 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain SecE PF00584.15 gi|20093061|ref|NP_619136.1| - 0.014 15.0 0.1 0.016 14.7 0.1 1.2 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.8 gi|20093062|ref|NP_619137.1| - 1.2e-24 85.8 0.2 1.7e-24 85.3 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|20093062|ref|NP_619137.1| - 2e-06 27.3 1.0 1.6e-05 24.4 0.2 2.3 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|20093062|ref|NP_619137.1| - 0.00049 20.2 0.0 0.0017 18.5 0.0 1.9 1 1 0 1 1 1 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|20093063|ref|NP_619138.1| - 5e-26 89.9 1.8 5e-26 89.9 1.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|20093063|ref|NP_619138.1| - 4.8e-23 81.0 0.7 4.8e-23 81.0 0.5 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain CTDII PF01556.13 gi|20093063|ref|NP_619138.1| - 0.026 14.4 0.4 0.045 13.6 0.3 1.4 1 0 0 1 1 1 0 DnaJ C terminal domain HGTP_anticodon PF03129.15 gi|20093063|ref|NP_619138.1| - 0.052 13.4 0.1 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 Anticodon binding domain DUF1351 PF07083.6 gi|20093063|ref|NP_619138.1| - 0.094 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) Ribosomal_L1 PF00687.16 gi|20093064|ref|NP_619139.1| - 7.1e-47 159.5 0.3 8.4e-47 159.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|20093065|ref|NP_619140.1| - 2.9e-23 81.6 0.2 6.1e-23 80.6 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|20093065|ref|NP_619140.1| - 1.9e-09 37.7 28.0 1.9e-09 37.7 19.4 2.8 3 1 0 3 3 3 1 60s Acidic ribosomal protein DUF2780 PF11075.3 gi|20093065|ref|NP_619140.1| - 0.53 10.3 0.0 0.53 10.3 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function VcgC/VcgE (DUF2780) FdhE PF04216.7 gi|20093065|ref|NP_619140.1| - 2 8.0 4.5 1.3 8.6 2.0 1.5 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Ribosomal_60s PF00428.14 gi|20093066|ref|NP_619141.1| - 1e-20 73.9 24.6 1.2e-20 73.7 17.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF1631 PF07793.6 gi|20093066|ref|NP_619141.1| - 0.093 10.8 3.9 0.1 10.6 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) CAP_N PF01213.14 gi|20093066|ref|NP_619141.1| - 0.12 11.6 0.9 0.15 11.3 0.6 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Sigma70_ner PF04546.8 gi|20093066|ref|NP_619141.1| - 0.34 10.4 3.6 0.4 10.2 2.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region PepSY_2 PF13670.1 gi|20093066|ref|NP_619141.1| - 2.8 7.9 15.6 1.6 8.6 0.1 2.2 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain Shadoo PF14999.1 gi|20093066|ref|NP_619141.1| - 6.3 6.6 10.3 7 6.5 6.8 1.4 1 1 0 1 1 1 0 Shadow of prion protein, neuroprotective FGE-sulfatase PF03781.11 gi|20093067|ref|NP_619142.1| - 4.7e-53 180.2 6.6 2.2e-52 177.9 4.6 1.8 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Radical_SAM PF04055.16 gi|20093068|ref|NP_619143.1| - 1.3e-15 57.9 0.5 4.2e-15 56.3 0.1 1.9 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|20093068|ref|NP_619143.1| - 0.023 14.7 0.0 0.071 13.1 0.0 1.9 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|20093068|ref|NP_619143.1| - 0.056 13.5 0.1 0.15 12.1 0.1 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Plasmid_stabil PF05016.9 gi|20093069|ref|NP_619144.1| - 0.0005 20.4 0.0 0.00053 20.3 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gag_p15 PF08723.5 gi|20093070|ref|NP_619145.1| - 0.1 12.5 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Gag protein p15 V-ATPase_H_N PF03224.9 gi|20093070|ref|NP_619145.1| - 0.13 11.3 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 V-ATPase subunit H KAP_NTPase PF07693.9 gi|20093072|ref|NP_619147.1| - 4.2e-10 39.1 0.0 4.2e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 KAP family P-loop domain Torsin PF06309.6 gi|20093072|ref|NP_619147.1| - 0.0015 18.4 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 Torsin NACHT PF05729.7 gi|20093072|ref|NP_619147.1| - 0.005 16.5 0.1 0.0056 16.3 0.0 1.1 1 0 0 1 1 1 1 NACHT domain Zeta_toxin PF06414.7 gi|20093072|ref|NP_619147.1| - 0.025 13.7 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|20093072|ref|NP_619147.1| - 0.028 15.2 0.0 0.038 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2791 PF10923.3 gi|20093072|ref|NP_619147.1| - 0.096 11.2 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_14 PF13173.1 gi|20093072|ref|NP_619147.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|20093072|ref|NP_619147.1| - 0.14 12.3 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PKD PF00801.15 gi|20093073|ref|NP_619148.1| - 1.4e-66 220.1 61.3 2e-15 56.2 3.9 6.2 5 0 0 5 5 5 5 PKD domain PQQ_2 PF13360.1 gi|20093073|ref|NP_619148.1| - 3e-64 216.7 23.1 1.3e-21 77.1 0.5 6.9 2 2 4 6 6 6 5 PQQ-like domain PQQ_3 PF13570.1 gi|20093073|ref|NP_619148.1| - 3.5e-58 192.3 65.8 4.4e-06 26.7 0.0 16.7 16 0 0 16 16 16 13 PQQ-like domain PQQ PF01011.16 gi|20093073|ref|NP_619148.1| - 5.4e-37 123.5 43.1 2e-06 27.0 0.0 15.4 18 0 0 18 18 18 10 PQQ enzyme repeat Y_Y_Y PF07495.8 gi|20093073|ref|NP_619148.1| - 0.023 14.4 18.5 3.7 7.3 0.5 5.1 5 0 0 5 5 5 0 Y_Y_Y domain DUF4625 PF15418.1 gi|20093073|ref|NP_619148.1| - 0.029 14.5 5.2 15 5.7 0.0 5.1 6 0 0 6 6 6 0 Domain of unknown function (DUF4625) LRR_5 PF13306.1 gi|20093074|ref|NP_619149.1| - 6.3e-134 439.8 16.6 4e-44 149.4 0.6 4.7 3 1 1 4 4 4 4 Leucine rich repeats (6 copies) LRR_8 PF13855.1 gi|20093074|ref|NP_619149.1| - 2.3e-40 136.1 0.0 0.00015 21.4 0.0 9.9 5 2 5 10 10 10 8 Leucine rich repeat PKD PF00801.15 gi|20093074|ref|NP_619149.1| - 1.3e-39 133.7 58.6 1.1e-11 44.3 5.4 6.0 5 0 0 5 5 5 5 PKD domain PQQ_2 PF13360.1 gi|20093074|ref|NP_619149.1| - 1.6e-26 93.2 9.6 7.5e-15 55.0 1.5 3.5 2 1 2 4 4 4 3 PQQ-like domain PQQ_3 PF13570.1 gi|20093074|ref|NP_619149.1| - 7.6e-18 64.1 47.1 4.5e-05 23.5 0.1 9.6 10 0 0 10 10 10 6 PQQ-like domain PQQ PF01011.16 gi|20093074|ref|NP_619149.1| - 1.4e-08 33.8 20.7 0.0042 16.5 0.1 7.2 8 0 0 8 8 8 3 PQQ enzyme repeat MitoNEET_N PF10660.4 gi|20093074|ref|NP_619149.1| - 0.031 14.1 0.1 16 5.4 0.0 4.9 5 2 3 8 8 7 0 Iron-containing outer mitochondrial membrane protein N-terminus Fucose_iso_N1 PF07881.7 gi|20093074|ref|NP_619149.1| - 0.058 12.9 0.3 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 L-fucose isomerase, first N-terminal domain DUF945 PF06097.6 gi|20093074|ref|NP_619149.1| - 0.23 10.1 1.3 0.43 9.2 0.9 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) Colicin_C PF12106.3 gi|20093074|ref|NP_619149.1| - 0.64 9.6 49.3 4.6 6.8 0.2 11.7 11 0 0 11 11 11 0 Colicin C terminal ribonuclease domain EF-hand_8 PF13833.1 gi|20093074|ref|NP_619149.1| - 2.8 7.6 10.2 0.58 9.8 1.5 3.3 3 0 0 3 3 3 0 EF-hand domain pair PQQ_2 PF13360.1 gi|20093076|ref|NP_619151.1| - 6.7e-107 356.3 42.0 2.5e-22 79.4 0.1 9.9 3 3 7 10 10 10 10 PQQ-like domain PQQ_3 PF13570.1 gi|20093076|ref|NP_619151.1| - 2.7e-85 278.5 104.2 2.2e-06 27.7 0.5 24.4 24 0 0 24 24 24 20 PQQ-like domain PKD PF00801.15 gi|20093076|ref|NP_619151.1| - 4.7e-73 240.8 70.3 9.1e-17 60.5 3.3 7.2 6 0 0 6 6 6 6 PKD domain PQQ PF01011.16 gi|20093076|ref|NP_619151.1| - 3.5e-41 136.7 56.5 1.1e-05 24.7 0.0 19.5 19 0 0 19 19 19 12 PQQ enzyme repeat Kelch_1 PF01344.20 gi|20093076|ref|NP_619151.1| - 0.0035 16.8 0.3 0.0035 16.8 0.2 3.7 3 0 0 3 3 3 1 Kelch motif Tcp10_C PF07202.8 gi|20093076|ref|NP_619151.1| - 0.041 13.4 0.0 1 8.8 0.0 2.8 2 1 0 3 3 3 0 T-complex protein 10 C-terminus EF-hand_8 PF13833.1 gi|20093076|ref|NP_619151.1| - 0.13 11.8 6.4 0.73 9.4 1.5 3.5 3 0 0 3 3 3 0 EF-hand domain pair DUF1727 PF08353.5 gi|20093076|ref|NP_619151.1| - 0.6 9.7 7.6 15 5.2 0.0 4.7 6 0 0 6 6 6 0 Domain of unknown function (DUF1727) EF-hand_1 PF00036.27 gi|20093076|ref|NP_619151.1| - 0.75 9.2 13.2 0.015 14.5 1.0 4.1 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.1 gi|20093076|ref|NP_619151.1| - 3 7.9 10.6 0.16 11.9 0.2 4.2 4 0 0 4 4 4 0 EF-hand domain LRR_5 PF13306.1 gi|20093078|ref|NP_619153.1| - 3.5e-235 767.2 36.1 5.9e-45 152.1 0.2 8.2 3 3 4 7 7 7 7 Leucine rich repeats (6 copies) LRR_8 PF13855.1 gi|20093078|ref|NP_619153.1| - 7.2e-73 240.2 0.0 3.3e-05 23.5 0.0 15.6 5 4 11 16 16 16 15 Leucine rich repeat PKD PF00801.15 gi|20093078|ref|NP_619153.1| - 6.8e-32 109.0 48.5 4.5e-13 48.7 3.0 6.1 6 0 0 6 6 6 3 PKD domain MitoNEET_N PF10660.4 gi|20093078|ref|NP_619153.1| - 0.0016 18.2 4.0 28 4.6 0.0 8.1 11 0 0 11 11 11 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF3620 PF12281.3 gi|20093078|ref|NP_619153.1| - 0.26 10.9 1.2 1.3e+02 2.2 0.0 4.6 4 1 1 5 5 5 0 Protein of unknown function (DUF3620) LRR_6 PF13516.1 gi|20093078|ref|NP_619153.1| - 2.5 8.4 7.4 14 6.1 0.0 6.1 7 0 0 7 7 7 0 Leucine Rich repeat EF-hand_8 PF13833.1 gi|20093078|ref|NP_619153.1| - 3.3 7.3 10.3 0.58 9.8 1.5 3.4 3 0 0 3 3 3 0 EF-hand domain pair PQQ_3 PF13570.1 gi|20093079|ref|NP_619154.1| - 5.3e-21 74.2 37.1 0.00037 20.6 0.4 8.3 8 0 0 8 8 8 6 PQQ-like domain PQQ_2 PF13360.1 gi|20093079|ref|NP_619154.1| - 6.7e-18 65.0 10.2 1.1e-08 34.8 3.0 3.2 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|20093079|ref|NP_619154.1| - 0.047 13.2 2.8 1.4 8.5 0.0 4.5 4 0 0 4 4 4 0 PQQ enzyme repeat RepA_N PF06970.6 gi|20093079|ref|NP_619154.1| - 0.17 11.7 0.1 17 5.3 0.0 3.0 3 0 0 3 3 3 0 Replication initiator protein A (RepA) N-terminus PQQ_2 PF13360.1 gi|20093080|ref|NP_619155.1| - 9.6e-74 247.8 9.8 6.3e-20 71.6 0.1 6.8 2 2 4 6 6 6 6 PQQ-like domain PQQ_3 PF13570.1 gi|20093080|ref|NP_619155.1| - 4.7e-66 217.4 57.6 8.1e-08 32.2 0.1 17.1 17 0 0 17 17 17 13 PQQ-like domain NosD PF05048.8 gi|20093080|ref|NP_619155.1| - 3.9e-63 212.7 34.5 4.8e-38 130.6 11.3 3.9 4 0 0 4 4 4 2 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|20093080|ref|NP_619155.1| - 7.6e-40 134.5 34.4 6.3e-14 51.4 1.6 5.4 4 0 0 4 4 4 3 PKD domain PQQ PF01011.16 gi|20093080|ref|NP_619155.1| - 1.4e-36 122.1 19.7 6.8e-05 22.1 0.0 14.3 14 0 0 14 14 14 11 PQQ enzyme repeat Beta_helix PF13229.1 gi|20093080|ref|NP_619155.1| - 2.1e-10 40.6 36.4 3.7e-07 30.0 5.5 3.6 3 0 0 3 3 3 2 Right handed beta helix region EF-hand_6 PF13405.1 gi|20093080|ref|NP_619155.1| - 0.25 11.3 9.8 0.12 12.3 0.3 4.1 3 0 0 3 3 3 0 EF-hand domain LRR_5 PF13306.1 gi|20093081|ref|NP_619156.1| - 5.2e-196 640.5 31.9 6.7e-42 142.2 2.9 8.4 4 3 4 8 8 8 8 Leucine rich repeats (6 copies) PKD PF00801.15 gi|20093081|ref|NP_619156.1| - 9.4e-64 211.1 84.5 7.4e-14 51.2 2.9 8.4 8 0 0 8 8 8 6 PKD domain LRR_8 PF13855.1 gi|20093081|ref|NP_619156.1| - 9.1e-48 159.8 0.0 4e-05 23.2 0.0 11.7 4 3 12 16 16 16 15 Leucine rich repeat MitoNEET_N PF10660.4 gi|20093081|ref|NP_619156.1| - 1.7e-06 27.8 5.6 2.8 7.8 0.0 8.4 8 2 2 10 10 10 1 Iron-containing outer mitochondrial membrane protein N-terminus Y_Y_Y PF07495.8 gi|20093081|ref|NP_619156.1| - 0.0014 18.2 24.9 4.3 7.1 0.3 7.0 7 0 0 7 7 7 4 Y_Y_Y domain DUF3620 PF12281.3 gi|20093081|ref|NP_619156.1| - 0.067 12.9 8.4 4.1 7.0 0.1 5.6 4 2 1 7 7 7 0 Protein of unknown function (DUF3620) FixG_C PF11614.3 gi|20093082|ref|NP_619157.1| - 0.0013 18.7 0.0 0.0045 17.0 0.0 2.0 2 0 0 2 2 2 1 IG-like fold at C-terminal of FixG, putative oxidoreductase PapD_N PF00345.15 gi|20093082|ref|NP_619157.1| - 0.0048 16.6 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Pili and flagellar-assembly chaperone, PapD N-terminal domain PQQ_3 PF13570.1 gi|20093083|ref|NP_619158.1| - 1.2e-37 127.1 30.3 2e-12 46.9 0.5 8.3 7 2 0 7 7 7 6 PQQ-like domain PQQ_2 PF13360.1 gi|20093083|ref|NP_619158.1| - 5.8e-31 107.7 4.7 7.5e-20 71.3 0.3 3.8 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|20093083|ref|NP_619158.1| - 1.1e-24 84.6 13.7 6.1e-08 31.8 0.1 7.2 6 1 1 7 7 7 5 PQQ enzyme repeat CobN-Mg_chel PF02514.11 gi|20093084|ref|NP_619159.1| - 0 1183.0 0.0 0 1180.4 0.0 1.9 1 1 0 1 1 1 1 CobN/Magnesium Chelatase PKD PF00801.15 gi|20093086|ref|NP_619161.1| - 9.4e-76 249.5 78.6 2.8e-16 58.9 4.8 7.0 6 0 0 6 6 6 6 PKD domain PQQ_2 PF13360.1 gi|20093086|ref|NP_619161.1| - 2.6e-64 216.9 16.9 2.5e-22 79.5 0.5 6.3 2 2 4 6 6 6 5 PQQ-like domain PQQ_3 PF13570.1 gi|20093086|ref|NP_619161.1| - 6e-56 185.2 64.2 1.8e-06 28.0 0.0 16.5 16 0 0 16 16 16 13 PQQ-like domain PQQ PF01011.16 gi|20093086|ref|NP_619161.1| - 1.6e-37 125.1 32.1 9.5e-05 21.7 0.1 14.6 15 0 0 15 15 15 9 PQQ enzyme repeat Y_Y_Y PF07495.8 gi|20093086|ref|NP_619161.1| - 0.086 12.6 13.9 0.47 10.2 0.1 4.8 5 0 0 5 5 5 0 Y_Y_Y domain DUF4625 PF15418.1 gi|20093086|ref|NP_619161.1| - 0.22 11.6 6.0 18 5.4 0.0 5.0 6 0 0 6 6 6 0 Domain of unknown function (DUF4625) SSB PF00436.20 gi|20093086|ref|NP_619161.1| - 0.22 11.3 0.5 4.8 7.1 0.0 2.9 3 0 0 3 3 3 0 Single-strand binding protein family Macoilin PF09726.4 gi|20093087|ref|NP_619162.1| - 1.4 7.0 7.0 1.9 6.6 4.9 1.0 1 0 0 1 1 1 0 Transmembrane protein PKD PF00801.15 gi|20093088|ref|NP_619163.1| - 9.4e-56 185.4 56.5 4.2e-15 55.2 5.4 6.5 6 0 0 6 6 6 4 PKD domain PQQ_2 PF13360.1 gi|20093088|ref|NP_619163.1| - 8.6e-43 146.5 11.9 1e-21 77.4 0.5 3.7 2 1 2 4 4 4 3 PQQ-like domain PQQ_3 PF13570.1 gi|20093088|ref|NP_619163.1| - 4.3e-33 112.6 26.4 5.4e-06 26.5 0.5 9.0 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|20093088|ref|NP_619163.1| - 9.1e-23 78.6 25.0 0.00062 19.1 0.0 9.8 12 0 0 12 12 12 7 PQQ enzyme repeat DUF4625 PF15418.1 gi|20093088|ref|NP_619163.1| - 0.00071 19.7 1.6 17 5.5 0.0 4.7 5 0 0 5 5 5 1 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|20093088|ref|NP_619163.1| - 0.047 13.4 10.4 0.84 9.4 0.6 4.1 4 0 0 4 4 4 0 Y_Y_Y domain Haemocyan_bet_s PF14830.1 gi|20093088|ref|NP_619163.1| - 0.15 11.8 0.5 1.3e+02 2.3 0.0 4.1 4 0 0 4 4 4 0 Haemocyanin beta-sandwich Kelch_6 PF13964.1 gi|20093088|ref|NP_619163.1| - 0.36 11.0 3.5 17 5.7 0.1 4.1 3 0 0 3 3 3 0 Kelch motif NPFF PF15085.1 gi|20093089|ref|NP_619164.1| - 0.11 12.8 0.1 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Neuropeptide FF PQQ_2 PF13360.1 gi|20093090|ref|NP_619165.1| - 1.2e-53 182.0 10.1 5.6e-25 88.1 1.3 6.6 3 2 3 6 6 6 4 PQQ-like domain PKD PF00801.15 gi|20093090|ref|NP_619165.1| - 4.9e-45 151.1 48.7 4.2e-12 45.6 6.8 5.9 5 0 0 5 5 5 4 PKD domain PQQ_3 PF13570.1 gi|20093090|ref|NP_619165.1| - 3.9e-39 131.8 61.5 2e-08 34.2 0.4 16.3 17 2 1 18 18 18 12 PQQ-like domain PQQ PF01011.16 gi|20093090|ref|NP_619165.1| - 6e-28 94.9 10.0 0.00076 18.8 0.0 12.3 12 0 0 12 12 12 6 PQQ enzyme repeat DUF4651 PF15513.1 gi|20093090|ref|NP_619165.1| - 0.05 13.0 0.3 5.1 6.6 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4651) PQQ_3 PF13570.1 gi|20093091|ref|NP_619166.1| - 1.8e-14 53.4 25.2 0.043 14.1 0.2 7.7 8 0 0 8 8 8 6 PQQ-like domain PQQ_2 PF13360.1 gi|20093091|ref|NP_619166.1| - 1.4e-07 31.1 3.5 8e-05 22.2 1.6 3.0 1 1 1 2 2 2 2 PQQ-like domain LVIVD PF08309.6 gi|20093091|ref|NP_619166.1| - 0.0078 15.1 2.8 0.047 12.6 0.9 2.7 2 0 0 2 2 2 1 LVIVD repeat Phage-tail_2 PF09096.5 gi|20093091|ref|NP_619166.1| - 0.086 12.4 0.5 0.18 11.4 0.4 1.5 1 0 0 1 1 1 0 Baseplate structural protein, domain 2 DUF4430 PF14478.1 gi|20093093|ref|NP_619168.1| - 2e-12 46.9 0.2 4.9e-12 45.7 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) DUF3298 PF11738.3 gi|20093093|ref|NP_619168.1| - 0.52 10.8 3.4 7 7.2 2.4 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3298) PQQ_2 PF13360.1 gi|20093094|ref|NP_619169.1| - 4.2e-86 288.2 24.8 6.2e-21 74.9 0.1 7.1 2 2 5 7 7 7 7 PQQ-like domain PQQ_3 PF13570.1 gi|20093094|ref|NP_619169.1| - 5.4e-67 220.4 65.5 3.7e-08 33.3 0.0 17.0 16 0 0 16 16 16 15 PQQ-like domain PKD PF00801.15 gi|20093094|ref|NP_619169.1| - 4.1e-56 186.6 48.5 3e-16 58.9 2.8 6.7 5 0 0 5 5 5 4 PKD domain NosD PF05048.8 gi|20093094|ref|NP_619169.1| - 5.9e-53 179.4 53.9 1.4e-30 106.2 23.2 4.2 5 0 0 5 5 5 2 Periplasmic copper-binding protein (NosD) PQQ PF01011.16 gi|20093094|ref|NP_619169.1| - 2.6e-35 118.1 27.7 0.00045 19.6 0.2 14.3 13 0 0 13 13 13 10 PQQ enzyme repeat Beta_helix PF13229.1 gi|20093094|ref|NP_619169.1| - 2.6e-12 46.7 52.1 3e-06 27.0 6.8 4.5 2 1 0 2 2 2 2 Right handed beta helix region EF-hand_6 PF13405.1 gi|20093094|ref|NP_619169.1| - 0.067 13.1 9.3 0.14 12.0 0.2 4.2 3 0 0 3 3 3 0 EF-hand domain EF-hand_1 PF00036.27 gi|20093094|ref|NP_619169.1| - 0.26 10.6 15.0 0.014 14.6 1.0 4.3 4 0 0 4 4 4 0 EF hand TPR_1 PF00515.23 gi|20093095|ref|NP_619170.1| - 1.1e-160 515.4 80.9 6.3e-11 41.4 0.1 24.8 25 0 0 25 25 25 24 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20093095|ref|NP_619170.1| - 3.9e-141 458.9 77.6 7.2e-13 47.9 1.6 15.3 8 4 6 17 17 17 17 TPR repeat TPR_2 PF07719.12 gi|20093095|ref|NP_619170.1| - 1.3e-135 430.7 69.7 2.1e-08 33.4 0.1 24.9 25 0 0 25 25 25 22 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20093095|ref|NP_619170.1| - 5e-102 332.8 15.3 1.9e-10 41.1 1.5 15.9 7 4 7 16 16 16 14 Tetratricopeptide repeat TPR_8 PF13181.1 gi|20093095|ref|NP_619170.1| - 3.4e-90 289.2 93.7 3.1e-07 29.7 0.2 24.6 20 5 4 24 24 24 19 Tetratricopeptide repeat TPR_14 PF13428.1 gi|20093095|ref|NP_619170.1| - 1.7e-82 264.2 19.9 3.4e-05 24.1 0.1 21.2 6 5 16 22 22 21 18 Tetratricopeptide repeat TPR_12 PF13424.1 gi|20093095|ref|NP_619170.1| - 1.5e-79 261.9 58.4 8.1e-10 38.5 1.0 15.4 3 3 13 17 17 17 15 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20093095|ref|NP_619170.1| - 1.7e-79 255.5 67.4 8.5e-06 25.5 0.0 24.7 24 1 1 25 25 25 15 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20093095|ref|NP_619170.1| - 9e-70 230.5 17.0 3e-08 33.3 0.0 12.9 9 3 4 14 14 14 11 Tetratricopeptide repeat TPR_19 PF14559.1 gi|20093095|ref|NP_619170.1| - 1.1e-58 195.4 39.8 4.4e-07 30.1 0.1 15.1 8 4 8 18 18 18 13 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20093095|ref|NP_619170.1| - 1.3e-51 168.3 51.8 0.019 14.7 0.0 20.8 19 1 2 21 21 21 14 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20093095|ref|NP_619170.1| - 1.7e-41 137.8 55.7 0.0033 17.7 0.1 22.4 23 1 1 24 24 22 9 Tetratricopeptide repeat Apc3 PF12895.2 gi|20093095|ref|NP_619170.1| - 1.3e-37 127.7 56.9 5.9e-05 23.1 0.2 11.7 3 2 13 16 16 16 15 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|20093095|ref|NP_619170.1| - 3.7e-26 91.9 22.6 0.00038 19.3 1.0 9.8 4 2 3 9 9 9 7 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|20093095|ref|NP_619170.1| - 1.1e-20 73.2 72.2 0.02 14.7 0.1 18.7 19 3 0 20 20 19 7 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|20093095|ref|NP_619170.1| - 5.2e-18 64.6 43.9 0.45 10.4 0.0 16.9 20 1 1 21 21 17 5 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|20093095|ref|NP_619170.1| - 1e-12 47.7 24.4 0.00021 20.4 1.3 10.2 3 3 4 8 8 8 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|20093095|ref|NP_619170.1| - 6.3e-11 42.2 24.9 0.16 11.7 0.2 13.8 6 5 4 12 12 12 2 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|20093095|ref|NP_619170.1| - 8.9e-11 41.3 42.1 0.46 10.4 0.1 16.0 18 0 0 18 18 17 2 Tetratricopeptide repeat BTAD PF03704.12 gi|20093095|ref|NP_619170.1| - 4.3e-10 40.0 18.9 0.047 13.9 0.1 8.2 6 2 4 10 10 8 4 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|20093095|ref|NP_619170.1| - 8.3e-10 38.7 19.1 0.0014 18.6 1.0 9.8 7 3 2 10 10 10 2 Tetratrico peptide repeat TPR_20 PF14561.1 gi|20093095|ref|NP_619170.1| - 5.2e-07 29.6 12.0 0.73 9.9 0.0 8.6 4 2 5 10 10 10 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|20093095|ref|NP_619170.1| - 2.8e-06 27.2 10.6 3.2 8.4 0.0 9.9 12 0 0 12 12 9 1 Tetratricopeptide repeat FAT PF02259.18 gi|20093095|ref|NP_619170.1| - 0.00012 21.1 22.1 1.5 7.6 0.0 8.4 3 2 1 7 7 7 2 FAT domain Alkyl_sulf_dimr PF14863.1 gi|20093095|ref|NP_619170.1| - 0.00036 20.7 10.9 6.5 6.9 0.0 7.1 5 2 3 8 8 6 0 Alkyl sulfatase dimerisation ChAPs PF09295.5 gi|20093095|ref|NP_619170.1| - 0.0026 16.5 4.4 6.6 5.3 0.0 4.8 5 1 1 6 6 5 0 ChAPs (Chs5p-Arf1p-binding proteins) DDT PF02791.12 gi|20093095|ref|NP_619170.1| - 0.0026 17.4 0.7 1.4 8.7 0.0 5.5 6 0 0 6 6 4 1 DDT domain PPR PF01535.15 gi|20093095|ref|NP_619170.1| - 0.0034 17.2 23.6 27 5.0 0.0 12.1 15 0 0 15 15 13 0 PPR repeat DUF627 PF04781.7 gi|20093095|ref|NP_619170.1| - 0.034 13.7 11.3 44 3.7 0.0 7.6 9 1 2 11 11 10 0 Protein of unknown function (DUF627) Coatomer_E PF04733.9 gi|20093095|ref|NP_619170.1| - 0.072 12.2 19.6 1.8 7.6 0.1 7.2 6 1 2 8 8 8 0 Coatomer epsilon subunit EF-hand_1 PF00036.27 gi|20093096|ref|NP_619171.1| - 0.00011 21.2 5.4 0.00013 20.9 0.4 2.4 3 0 0 3 3 3 1 EF hand EF-hand_6 PF13405.1 gi|20093096|ref|NP_619171.1| - 0.00022 20.8 1.4 0.0022 17.7 0.1 2.2 2 0 0 2 2 2 1 EF-hand domain EF-hand_8 PF13833.1 gi|20093096|ref|NP_619171.1| - 0.0023 17.4 1.2 0.005 16.4 0.8 1.6 1 0 0 1 1 1 1 EF-hand domain pair EF-hand_5 PF13202.1 gi|20093096|ref|NP_619171.1| - 0.0048 16.1 0.2 0.013 14.7 0.1 1.8 1 0 0 1 1 1 1 EF hand EF-hand_7 PF13499.1 gi|20093096|ref|NP_619171.1| - 0.022 14.8 3.1 0.16 12.0 2.1 2.1 1 1 0 1 1 1 0 EF-hand domain pair Arch_fla_DE PF04659.8 gi|20093096|ref|NP_619171.1| - 0.045 13.5 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Archaeal flagella protein VCBS PF13517.1 gi|20093096|ref|NP_619171.1| - 0.078 13.3 0.9 0.15 12.4 0.2 1.7 1 1 0 1 1 1 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF843 PF05814.6 gi|20093097|ref|NP_619172.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF843) PKD PF00801.15 gi|20093098|ref|NP_619173.1| - 6.7e-50 166.7 42.8 2.9e-18 65.3 3.3 5.4 5 0 0 5 5 5 4 PKD domain PQQ_2 PF13360.1 gi|20093098|ref|NP_619173.1| - 1.9e-44 151.9 16.1 1.2e-20 74.0 1.8 4.2 2 1 3 5 5 5 4 PQQ-like domain PQQ_3 PF13570.1 gi|20093098|ref|NP_619173.1| - 5.4e-32 109.1 42.4 2.9e-06 27.3 0.0 9.9 8 1 1 9 9 9 8 PQQ-like domain NosD PF05048.8 gi|20093098|ref|NP_619173.1| - 5.6e-32 110.7 16.0 5.6e-32 110.7 11.1 2.7 2 1 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PQQ PF01011.16 gi|20093098|ref|NP_619173.1| - 1.4e-16 59.0 12.1 0.013 14.9 0.0 8.3 8 0 0 8 8 8 6 PQQ enzyme repeat Beta_helix PF13229.1 gi|20093098|ref|NP_619173.1| - 3.9e-08 33.1 13.6 3.9e-08 33.1 9.4 3.2 3 1 1 4 4 4 2 Right handed beta helix region A2M_N PF01835.14 gi|20093098|ref|NP_619173.1| - 0.0015 18.6 7.9 13 6.0 0.1 4.7 2 1 2 4 4 4 2 MG2 domain PQQ_2 PF13360.1 gi|20093099|ref|NP_619174.1| - 1.2e-16 60.9 11.2 4.4e-08 32.8 0.4 3.2 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|20093099|ref|NP_619174.1| - 4.5e-15 55.3 34.1 0.00077 19.6 0.1 7.5 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|20093099|ref|NP_619174.1| - 0.0017 17.7 3.3 0.17 11.5 0.0 4.1 4 0 0 4 4 4 2 PQQ enzyme repeat PQQ_2 PF13360.1 gi|20093101|ref|NP_619176.1| - 1.1e-74 250.9 11.3 9.5e-21 74.3 0.1 6.9 2 2 4 6 6 6 6 PQQ-like domain PQQ_3 PF13570.1 gi|20093101|ref|NP_619176.1| - 1.3e-68 225.5 60.3 1.6e-08 34.5 0.0 17.0 16 0 0 16 16 16 15 PQQ-like domain PKD PF00801.15 gi|20093101|ref|NP_619176.1| - 3.1e-66 219.0 61.7 8.3e-16 57.4 5.5 7.2 6 0 0 6 6 6 5 PKD domain NosD PF05048.8 gi|20093101|ref|NP_619176.1| - 1e-60 204.8 62.8 4.8e-32 110.9 13.5 4.5 3 1 1 4 4 4 3 Periplasmic copper-binding protein (NosD) PQQ PF01011.16 gi|20093101|ref|NP_619176.1| - 4.9e-34 114.1 27.5 0.00091 18.6 0.0 15.1 16 0 0 16 16 16 10 PQQ enzyme repeat Beta_helix PF13229.1 gi|20093101|ref|NP_619176.1| - 2.6e-11 43.5 58.4 6.6e-07 29.2 20.5 4.3 3 1 1 4 4 4 3 Right handed beta helix region EF-hand_1 PF00036.27 gi|20093101|ref|NP_619176.1| - 1.9 7.9 17.5 0.014 14.6 1.0 4.8 5 0 0 5 5 5 0 EF hand EspG PF06872.6 gi|20093102|ref|NP_619177.1| - 0.019 13.2 0.0 0.021 13.1 0.0 1.0 1 0 0 1 1 1 0 EspG protein PQQ_3 PF13570.1 gi|20093103|ref|NP_619178.1| - 5e-22 77.4 28.5 4.3e-05 23.6 0.1 8.5 8 1 0 8 8 8 6 PQQ-like domain PQQ_2 PF13360.1 gi|20093103|ref|NP_619178.1| - 1.5e-21 76.9 1.5 7.8e-10 38.6 0.0 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|20093103|ref|NP_619178.1| - 7.2e-08 31.5 10.5 0.023 14.2 0.0 6.4 5 0 0 5 5 5 3 PQQ enzyme repeat Kelch_1 PF01344.20 gi|20093103|ref|NP_619178.1| - 0.032 13.7 0.1 0.032 13.7 0.1 5.1 5 0 0 5 5 5 0 Kelch motif Kelch_6 PF13964.1 gi|20093103|ref|NP_619178.1| - 0.51 10.5 0.0 0.51 10.5 0.0 5.6 7 0 0 7 7 7 0 Kelch motif PKD PF00801.15 gi|20093104|ref|NP_619179.1| - 4.6e-100 327.4 106.8 7.5e-17 60.8 4.3 10.0 9 0 0 9 9 9 8 PKD domain NosD PF05048.8 gi|20093104|ref|NP_619179.1| - 1.1e-42 145.7 22.6 1.1e-42 145.7 15.6 4.8 6 1 0 6 6 6 1 Periplasmic copper-binding protein (NosD) PQQ_2 PF13360.1 gi|20093104|ref|NP_619179.1| - 2.3e-23 82.8 7.3 8.7e-13 48.2 0.2 4.2 2 1 1 3 3 3 2 PQQ-like domain PQQ_3 PF13570.1 gi|20093104|ref|NP_619179.1| - 1.1e-18 66.8 28.2 0.00054 20.1 0.0 9.1 8 0 0 8 8 8 6 PQQ-like domain Beta_helix PF13229.1 gi|20093104|ref|NP_619179.1| - 4.1e-11 42.8 22.5 4.1e-11 42.8 15.6 3.0 2 1 1 3 3 3 1 Right handed beta helix region PQQ PF01011.16 gi|20093104|ref|NP_619179.1| - 2.2e-08 33.2 13.9 0.00037 19.8 0.0 5.6 7 0 0 7 7 7 2 PQQ enzyme repeat SSB PF00436.20 gi|20093104|ref|NP_619179.1| - 3.3 7.6 7.7 6.4 6.7 0.0 4.7 7 0 0 7 7 7 0 Single-strand binding protein family PQQ_2 PF13360.1 gi|20093105|ref|NP_619180.1| - 1.9e-06 27.5 0.1 3.3e-06 26.7 0.1 1.3 1 1 0 1 1 1 1 PQQ-like domain PQQ PF01011.16 gi|20093105|ref|NP_619180.1| - 4.6e-06 25.9 1.4 0.031 13.8 0.1 3.0 3 1 0 3 3 3 2 PQQ enzyme repeat PQQ_3 PF13570.1 gi|20093105|ref|NP_619180.1| - 2e-05 24.6 1.4 2e-05 24.6 1.0 3.0 3 0 0 3 3 3 1 PQQ-like domain HEAT_2 PF13646.1 gi|20093106|ref|NP_619181.1| - 3.2e-75 248.4 20.3 6.3e-22 77.6 0.1 5.4 1 1 4 5 5 5 5 HEAT repeats HEAT PF02985.17 gi|20093106|ref|NP_619181.1| - 2.5e-47 154.7 7.8 0.00011 21.9 0.0 9.6 9 0 0 9 9 9 9 HEAT repeat HEAT_PBS PF03130.11 gi|20093106|ref|NP_619181.1| - 6.6e-45 147.0 34.0 0.0001 22.4 0.0 10.4 10 0 0 10 10 10 9 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|20093106|ref|NP_619181.1| - 6e-37 125.2 21.5 0.00011 22.6 0.0 9.3 8 1 1 9 9 9 9 HEAT-like repeat Arm PF00514.18 gi|20093106|ref|NP_619181.1| - 1.3e-25 88.2 6.4 0.007 16.1 0.0 8.6 2 2 6 8 8 8 7 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|20093106|ref|NP_619181.1| - 1.4e-09 36.8 0.0 0.00019 19.9 0.0 3.2 1 1 2 3 3 3 2 Adaptin N terminal region Cnd1 PF12717.2 gi|20093106|ref|NP_619181.1| - 4.5e-09 36.4 0.1 1.1 9.0 0.0 6.4 2 2 3 5 5 5 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|20093106|ref|NP_619181.1| - 5.1e-08 33.2 0.0 3 8.2 0.0 7.3 4 2 5 9 9 7 1 Vacuolar 14 Fab1-binding region ERAP1_C PF11838.3 gi|20093106|ref|NP_619181.1| - 7.6e-07 28.6 1.5 0.0047 16.2 0.1 3.6 1 1 3 4 4 4 2 ERAP1-like C-terminal domain Cohesin_HEAT PF12765.2 gi|20093106|ref|NP_619181.1| - 8.3e-05 22.4 4.1 0.022 14.6 0.1 4.5 5 0 0 5 5 4 1 HEAT repeat associated with sister chromatid cohesion ALF PF03752.8 gi|20093106|ref|NP_619181.1| - 0.00012 21.8 17.9 5.5 6.9 0.2 7.1 8 1 1 9 9 8 2 Short repeats of unknown function Aconitase_B_N PF11791.3 gi|20093106|ref|NP_619181.1| - 0.00018 21.3 0.2 6.2 6.6 0.1 4.6 2 2 2 5 5 5 1 Aconitate B N-terminal domain RasGEF_N_2 PF14663.1 gi|20093106|ref|NP_619181.1| - 0.00037 20.4 4.2 7.8 6.4 0.0 5.9 5 2 1 6 6 6 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain Vitellogenin_N PF01347.17 gi|20093106|ref|NP_619181.1| - 0.00095 17.5 0.1 0.92 7.6 0.0 3.9 3 2 2 5 5 5 1 Lipoprotein amino terminal region DNA_alkylation PF08713.6 gi|20093106|ref|NP_619181.1| - 0.013 14.9 0.5 0.85 9.0 0.0 3.2 2 1 1 4 4 4 0 DNA alkylation repair enzyme CLASP_N PF12348.3 gi|20093106|ref|NP_619181.1| - 0.014 14.7 1.2 28 3.9 0.0 4.6 3 1 1 4 4 4 0 CLASP N terminal Yip1 PF04893.12 gi|20093106|ref|NP_619181.1| - 0.1 12.0 6.0 0.18 11.2 4.1 1.2 1 0 0 1 1 1 0 Yip1 domain UPF0147 PF03685.8 gi|20093106|ref|NP_619181.1| - 0.34 10.8 2.9 59 3.6 0.0 4.5 4 1 1 5 5 5 0 Uncharacterised protein family (UPF0147) CD20 PF04103.10 gi|20093106|ref|NP_619181.1| - 0.64 9.9 7.5 2 8.3 5.3 1.7 1 1 0 1 1 1 0 CD20-like family SAM_adeno_trans PF01887.11 gi|20093107|ref|NP_619182.1| - 2.5e-86 288.9 0.1 2.8e-86 288.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Fer4_16 PF13484.1 gi|20093108|ref|NP_619183.1| - 0.018 15.7 3.7 0.053 14.2 2.5 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|20093108|ref|NP_619183.1| - 0.037 13.6 0.8 0.037 13.6 0.6 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20093108|ref|NP_619183.1| - 0.8 10.1 6.0 1.7 9.0 4.2 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain ABC2_membrane_3 PF12698.2 gi|20093109|ref|NP_619184.1| - 8.1e-30 104.0 26.3 1.1e-29 103.6 18.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|20093109|ref|NP_619184.1| - 1.2e-14 54.0 9.0 1.2e-14 54.0 6.3 2.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|20093109|ref|NP_619184.1| - 7.9e-10 38.0 7.7 1.6e-09 37.0 5.4 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20093109|ref|NP_619184.1| - 5.6e-08 32.2 25.0 1e-07 31.4 17.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|20093109|ref|NP_619184.1| - 1 8.5 13.1 0.039 13.1 4.6 1.8 2 0 0 2 2 2 0 CcmB protein ABC_tran PF00005.22 gi|20093110|ref|NP_619185.1| - 2e-32 112.3 0.0 3.1e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20093110|ref|NP_619185.1| - 2.5e-17 63.7 1.8 3.5e-15 56.7 0.7 2.4 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|20093110|ref|NP_619185.1| - 1.5e-06 27.5 0.1 0.0032 16.5 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA_16 PF13191.1 gi|20093110|ref|NP_619185.1| - 0.00086 19.3 0.0 0.0066 16.4 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|20093110|ref|NP_619185.1| - 0.0018 17.7 0.1 0.0041 16.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|20093110|ref|NP_619185.1| - 0.0054 16.0 1.1 2.6 7.2 0.1 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20093110|ref|NP_619185.1| - 0.006 16.9 2.4 0.011 16.0 1.0 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20093110|ref|NP_619185.1| - 0.013 14.7 0.1 0.043 13.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|20093110|ref|NP_619185.1| - 0.013 15.4 0.6 0.87 9.5 0.4 2.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|20093110|ref|NP_619185.1| - 0.022 13.5 0.1 0.064 12.0 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA PF00004.24 gi|20093110|ref|NP_619185.1| - 0.028 14.6 0.5 0.15 12.2 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|20093110|ref|NP_619185.1| - 0.047 13.4 0.3 2 8.1 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_13 PF13166.1 gi|20093110|ref|NP_619185.1| - 0.079 11.4 0.3 1.3 7.4 0.2 2.0 1 1 1 2 2 2 0 AAA domain Rad17 PF03215.10 gi|20093110|ref|NP_619185.1| - 0.088 11.4 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|20093110|ref|NP_619185.1| - 0.13 11.8 0.0 0.2 11.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|20093110|ref|NP_619185.1| - 0.14 12.6 0.6 0.84 10.1 0.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) DNA_binding_1 PF01035.15 gi|20093111|ref|NP_619186.1| - 7.3e-33 112.1 0.0 9.6e-33 111.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.10 gi|20093111|ref|NP_619186.1| - 2.7e-10 40.6 0.0 5.4e-10 39.7 0.0 1.5 1 1 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Peptidase_M3 PF01432.15 gi|20093112|ref|NP_619187.1| - 3e-06 26.5 2.4 3.7e-06 26.2 1.7 1.1 1 0 0 1 1 1 1 Peptidase family M3 DUF1679 PF07914.6 gi|20093112|ref|NP_619187.1| - 0.064 11.8 1.5 0.091 11.3 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1679) DUF4367 PF14285.1 gi|20093113|ref|NP_619188.1| - 1.7e-18 66.5 1.9 1.7e-18 66.5 1.3 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) LolA PF03548.10 gi|20093113|ref|NP_619188.1| - 3.6e-08 33.2 0.1 1.6e-07 31.1 0.1 2.0 1 1 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF4412 PF14371.1 gi|20093113|ref|NP_619188.1| - 0.00045 20.6 3.2 0.012 16.1 0.0 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4412) DUF1571 PF07608.6 gi|20093113|ref|NP_619188.1| - 0.0006 19.0 0.0 0.0013 17.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1571) MucB_RseB PF03888.9 gi|20093113|ref|NP_619188.1| - 0.0017 17.4 0.0 0.003 16.6 0.0 1.5 1 0 0 1 1 1 1 MucB/RseB family DUF2092 PF09865.4 gi|20093113|ref|NP_619188.1| - 0.0019 17.3 0.0 1 8.3 0.0 2.2 2 0 0 2 2 2 2 Predicted periplasmic protein (DUF2092) DUF4245 PF14030.1 gi|20093113|ref|NP_619188.1| - 0.008 15.9 0.0 0.051 13.2 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF4245) DUF1329 PF07044.6 gi|20093113|ref|NP_619188.1| - 0.014 14.4 0.7 0.034 13.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1329) Sec62 PF03839.11 gi|20093113|ref|NP_619188.1| - 0.014 14.8 1.0 0.024 14.0 0.7 1.3 1 0 0 1 1 1 0 Translocation protein Sec62 DUF4367 PF14285.1 gi|20093114|ref|NP_619189.1| - 3.7e-18 65.4 8.8 3.7e-18 65.4 1.4 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4367) LolA PF03548.10 gi|20093114|ref|NP_619189.1| - 5.5e-07 29.3 0.1 2e-06 27.5 0.1 1.9 1 1 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF2092 PF09865.4 gi|20093114|ref|NP_619189.1| - 0.00015 20.9 0.1 0.2 10.6 0.1 2.8 3 0 0 3 3 3 2 Predicted periplasmic protein (DUF2092) MucB_RseB PF03888.9 gi|20093114|ref|NP_619189.1| - 0.0015 17.5 0.0 0.0026 16.8 0.0 1.4 1 0 0 1 1 1 1 MucB/RseB family DUF1571 PF07608.6 gi|20093114|ref|NP_619189.1| - 0.006 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1571) Sec62 PF03839.11 gi|20093114|ref|NP_619189.1| - 0.046 13.1 1.3 0.078 12.3 0.9 1.3 1 0 0 1 1 1 0 Translocation protein Sec62 GRP PF07172.6 gi|20093114|ref|NP_619189.1| - 0.17 12.3 0.1 0.29 11.6 0.1 1.4 1 0 0 1 1 1 0 Glycine rich protein family DUF4367 PF14285.1 gi|20093115|ref|NP_619190.1| - 2e-18 66.2 2.9 5.4e-18 64.8 0.4 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) DUF1329 PF07044.6 gi|20093115|ref|NP_619190.1| - 0.0068 15.3 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1329) DUF1571 PF07608.6 gi|20093115|ref|NP_619190.1| - 0.012 14.7 0.0 0.026 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) DUF4367 PF14285.1 gi|20093116|ref|NP_619191.1| - 1.6e-13 50.3 1.5 4.5e-13 48.8 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4367) DUF1571 PF07608.6 gi|20093116|ref|NP_619191.1| - 0.00052 19.2 0.0 0.001 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1571) DUF1329 PF07044.6 gi|20093116|ref|NP_619191.1| - 0.012 14.6 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1329) ThiC PF01964.13 gi|20093117|ref|NP_619192.1| - 5.4e-182 604.9 0.4 6.2e-182 604.7 0.3 1.0 1 0 0 1 1 1 1 ThiC family Glycos_transf_2 PF00535.21 gi|20093118|ref|NP_619193.1| - 3.9e-19 68.9 0.0 5.5e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20093118|ref|NP_619193.1| - 2.9e-07 30.5 0.0 4.3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20093118|ref|NP_619193.1| - 0.0049 17.1 0.0 0.0084 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF1600 PF07667.6 gi|20093118|ref|NP_619193.1| - 0.015 15.3 3.2 0.027 14.5 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1600) CBS PF00571.23 gi|20093118|ref|NP_619193.1| - 0.018 14.8 0.0 0.051 13.3 0.0 1.7 1 0 0 1 1 1 0 CBS domain DUF204 PF02659.10 gi|20093118|ref|NP_619193.1| - 0.064 13.3 4.6 0.046 13.8 1.9 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF Bmp PF02608.9 gi|20093118|ref|NP_619193.1| - 0.072 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Basic membrane protein TBP PF00352.16 gi|20093119|ref|NP_619194.1| - 1.1e-65 217.0 0.2 1.8e-32 110.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|20093119|ref|NP_619194.1| - 7.8e-06 25.8 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|20093119|ref|NP_619194.1| - 0.0025 17.1 0.0 0.72 9.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) DUF387 PF04079.11 gi|20093120|ref|NP_619195.1| - 1.1e-39 135.3 0.0 3.3e-39 133.8 0.0 1.8 2 0 0 2 2 2 1 Putative transcriptional regulators (Ypuh-like) HTH_15 PF12324.3 gi|20093120|ref|NP_619195.1| - 0.001 18.6 0.0 0.016 14.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of alkylmercury lyase HTH_20 PF12840.2 gi|20093120|ref|NP_619195.1| - 0.093 12.5 0.1 9.6 6.1 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain ScpA_ScpB PF02616.9 gi|20093121|ref|NP_619196.1| - 8e-34 117.2 0.4 1.5e-33 116.3 0.3 1.4 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|20093122|ref|NP_619197.1| - 4.2e-71 238.6 0.0 9.6e-71 237.4 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|20093122|ref|NP_619197.1| - 4.3e-32 110.5 0.0 2.8e-31 107.9 0.0 2.5 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|20093122|ref|NP_619197.1| - 6.2e-15 56.0 18.5 6.2e-15 56.0 12.8 6.8 2 2 2 4 4 4 1 AAA domain AAA_21 PF13304.1 gi|20093122|ref|NP_619197.1| - 4.1e-09 36.8 13.2 2.5e-05 24.4 0.2 4.8 4 1 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|20093122|ref|NP_619197.1| - 7e-07 28.6 0.0 1.6e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain BLOC1_2 PF10046.4 gi|20093122|ref|NP_619197.1| - 0.015 15.3 0.2 0.015 15.3 0.1 9.6 5 2 5 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|20093122|ref|NP_619197.1| - 1.6 7.7 33.1 3.2 6.8 2.7 4.9 2 2 1 4 4 4 0 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|20093123|ref|NP_619198.1| - 0.24 11.2 3.5 0.47 10.2 2.5 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|20093123|ref|NP_619198.1| - 9.9 6.0 12.2 0.6 9.9 1.0 2.7 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF2187 PF09953.4 gi|20093124|ref|NP_619199.1| - 0.069 12.8 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) FeoB_N PF02421.13 gi|20093125|ref|NP_619200.1| - 7.5e-55 184.4 0.1 1.3e-54 183.7 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|20093125|ref|NP_619200.1| - 1.9e-28 98.5 25.3 3.1e-15 56.0 5.8 2.9 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.7 gi|20093125|ref|NP_619200.1| - 3.4e-16 58.4 0.9 3.4e-16 58.4 0.6 3.7 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|20093125|ref|NP_619200.1| - 1.5e-14 53.9 0.0 2.6e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.11 gi|20093125|ref|NP_619200.1| - 0.0017 17.4 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|20093125|ref|NP_619200.1| - 0.01 15.6 0.9 0.15 11.8 0.0 2.2 1 1 1 2 2 2 1 Dynamin family ATP_bind_1 PF03029.12 gi|20093125|ref|NP_619200.1| - 0.021 14.3 0.1 0.07 12.6 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Fe_dep_repr_C PF02742.10 gi|20093126|ref|NP_619201.1| - 6.6e-29 99.4 0.8 1.9e-28 97.9 0.1 2.1 3 0 0 3 3 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|20093126|ref|NP_619201.1| - 8.1e-23 80.1 0.3 1.7e-22 79.0 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|20093126|ref|NP_619201.1| - 2.7e-15 56.0 0.5 4.3e-14 52.2 0.1 2.3 2 1 0 2 2 2 1 FeoA domain MarR PF01047.17 gi|20093126|ref|NP_619201.1| - 6.3e-08 32.2 0.0 1.6e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|20093126|ref|NP_619201.1| - 1.5e-07 30.7 0.0 1.4e-06 27.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20093126|ref|NP_619201.1| - 4.8e-07 29.3 0.1 9.8e-07 28.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|20093126|ref|NP_619201.1| - 8.1e-07 29.2 0.0 2e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|20093126|ref|NP_619201.1| - 1.2e-06 28.0 0.0 3e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|20093126|ref|NP_619201.1| - 1.4e-06 27.9 0.0 3.2e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|20093126|ref|NP_619201.1| - 1.8e-05 24.3 0.0 4.8e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|20093126|ref|NP_619201.1| - 3.6e-05 23.3 0.0 6.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|20093126|ref|NP_619201.1| - 9.7e-05 22.2 0.5 0.00021 21.1 0.3 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|20093126|ref|NP_619201.1| - 0.00024 20.6 0.0 0.00047 19.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|20093126|ref|NP_619201.1| - 0.00025 21.0 0.0 0.00087 19.3 0.0 1.8 2 1 0 2 2 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|20093126|ref|NP_619201.1| - 0.00025 20.4 0.1 0.00052 19.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LexA_DNA_bind PF01726.11 gi|20093126|ref|NP_619201.1| - 0.00035 20.0 0.0 0.00075 19.0 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_6 PF01418.12 gi|20093126|ref|NP_619201.1| - 0.00045 19.8 0.0 0.00099 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_45 PF14947.1 gi|20093126|ref|NP_619201.1| - 0.0014 18.4 0.2 0.0031 17.2 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.16 gi|20093126|ref|NP_619201.1| - 0.0025 17.2 0.0 0.0079 15.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|20093126|ref|NP_619201.1| - 0.003 17.2 0.0 0.0063 16.2 0.0 1.6 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF4423 PF14394.1 gi|20093126|ref|NP_619201.1| - 0.0036 16.8 0.1 0.0095 15.4 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_AsnC-type PF13404.1 gi|20093126|ref|NP_619201.1| - 0.009 15.5 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20093126|ref|NP_619201.1| - 0.027 14.2 0.0 0.054 13.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|20093126|ref|NP_619201.1| - 0.029 14.3 0.0 0.068 13.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|20093126|ref|NP_619201.1| - 0.03 14.4 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.12 gi|20093126|ref|NP_619201.1| - 0.052 13.0 0.0 0.1 12.0 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_23 PF13384.1 gi|20093126|ref|NP_619201.1| - 0.076 12.6 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|20093126|ref|NP_619201.1| - 0.082 12.4 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain IF2_N PF04760.10 gi|20093126|ref|NP_619201.1| - 0.099 12.3 0.1 0.39 10.4 0.0 2.0 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_1 PF00126.22 gi|20093126|ref|NP_619201.1| - 0.11 12.2 0.0 0.44 10.3 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_terminase PF10668.4 gi|20093126|ref|NP_619201.1| - 0.12 12.1 0.0 4.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Phage terminase small subunit Acetyltransf_1 PF00583.19 gi|20093127|ref|NP_619202.1| - 4.1e-12 45.9 0.0 5.6e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|20093127|ref|NP_619202.1| - 7.2e-09 35.6 0.0 1.3e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20093127|ref|NP_619202.1| - 1.2e-07 31.8 0.0 1.8e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|20093127|ref|NP_619202.1| - 9.3e-06 25.6 0.0 1.2e-05 25.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20093127|ref|NP_619202.1| - 6.5e-05 22.7 0.0 0.00019 21.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20093127|ref|NP_619202.1| - 0.00096 18.9 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|20093127|ref|NP_619202.1| - 0.0013 18.9 0.0 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|20093127|ref|NP_619202.1| - 0.0045 16.9 0.1 0.0058 16.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20093127|ref|NP_619202.1| - 0.017 14.8 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein BioY PF02632.9 gi|20093128|ref|NP_619203.1| - 9.5e-47 158.3 15.9 9.5e-47 158.3 11.0 1.3 2 0 0 2 2 2 1 BioY family ECF-ribofla_trS PF07155.7 gi|20093128|ref|NP_619203.1| - 0.00095 18.9 12.4 0.19 11.4 8.6 2.6 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|20093128|ref|NP_619203.1| - 0.0035 17.2 16.1 0.0047 16.8 11.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) ABC2_membrane_3 PF12698.2 gi|20093128|ref|NP_619203.1| - 7.1 5.5 11.7 6.4 5.6 7.5 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|20093129|ref|NP_619204.1| - 2.6e-27 95.7 0.0 4.9e-27 94.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.14 gi|20093129|ref|NP_619204.1| - 2.8e-09 36.5 0.9 3.6e-07 29.6 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|20093129|ref|NP_619204.1| - 8.5e-09 35.7 0.0 0.00058 19.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|20093129|ref|NP_619204.1| - 2e-05 24.2 0.0 0.073 12.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_18 PF13238.1 gi|20093129|ref|NP_619204.1| - 0.00031 21.0 0.2 0.057 13.7 0.2 2.3 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|20093129|ref|NP_619204.1| - 0.00069 19.3 0.4 0.04 13.6 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_29 PF13555.1 gi|20093129|ref|NP_619204.1| - 0.00074 18.9 0.1 0.0015 18.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|20093129|ref|NP_619204.1| - 0.0018 17.6 0.0 0.098 12.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20093129|ref|NP_619204.1| - 0.0045 17.1 0.4 2.1 8.4 0.1 2.9 3 0 0 3 3 3 1 AAA domain ArgK PF03308.11 gi|20093129|ref|NP_619204.1| - 0.0057 15.4 0.0 0.0086 14.8 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_23 PF13476.1 gi|20093129|ref|NP_619204.1| - 0.013 15.8 0.2 0.02 15.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|20093129|ref|NP_619204.1| - 0.015 15.2 0.1 3.5 7.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain RecA PF00154.16 gi|20093129|ref|NP_619204.1| - 0.016 14.3 0.8 1.1 8.2 0.1 2.3 1 1 0 2 2 2 0 recA bacterial DNA recombination protein KaiC PF06745.8 gi|20093129|ref|NP_619204.1| - 0.016 14.3 0.4 0.042 12.9 0.1 1.7 2 0 0 2 2 2 0 KaiC CbiA PF01656.18 gi|20093129|ref|NP_619204.1| - 0.025 13.9 0.1 0.05 13.0 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|20093129|ref|NP_619204.1| - 0.032 14.2 0.0 0.059 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|20093129|ref|NP_619204.1| - 0.032 15.0 0.2 0.15 12.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|20093129|ref|NP_619204.1| - 0.047 13.3 0.3 0.18 11.4 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|20093129|ref|NP_619204.1| - 0.083 12.5 0.1 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_31 PF13614.1 gi|20093129|ref|NP_619204.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|20093129|ref|NP_619204.1| - 0.14 11.5 0.2 5.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ABC_ATPase PF09818.4 gi|20093129|ref|NP_619204.1| - 0.56 8.7 1.7 8.7 4.8 0.4 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|20093130|ref|NP_619205.1| - 1.7e-30 106.1 0.0 3.6e-30 105.0 0.0 1.5 1 1 1 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|20093130|ref|NP_619205.1| - 4e-10 40.1 0.1 2e-06 27.9 0.0 2.3 1 1 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|20093130|ref|NP_619205.1| - 0.00046 19.0 0.1 0.0012 17.7 0.0 1.7 2 0 0 2 2 2 1 ArgK protein AAA_23 PF13476.1 gi|20093130|ref|NP_619205.1| - 0.00067 20.0 0.0 0.0014 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|20093130|ref|NP_619205.1| - 0.002 17.6 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|20093130|ref|NP_619205.1| - 0.0051 16.2 0.1 2.7 7.3 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|20093130|ref|NP_619205.1| - 0.0063 15.7 0.1 0.14 11.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|20093130|ref|NP_619205.1| - 0.008 16.1 0.1 0.015 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|20093130|ref|NP_619205.1| - 0.023 14.2 0.1 0.15 11.6 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|20093130|ref|NP_619205.1| - 0.028 13.8 0.0 0.57 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|20093130|ref|NP_619205.1| - 0.029 13.5 0.0 0.058 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|20093130|ref|NP_619205.1| - 0.038 14.1 0.1 0.15 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|20093130|ref|NP_619205.1| - 0.04 12.9 0.0 1.3 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain NTPase_1 PF03266.10 gi|20093130|ref|NP_619205.1| - 0.064 12.9 0.1 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 NTPase Miro PF08477.8 gi|20093130|ref|NP_619205.1| - 0.1 13.0 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein Zeta_toxin PF06414.7 gi|20093130|ref|NP_619205.1| - 0.18 10.8 0.3 1.5 7.8 0.0 2.4 3 0 0 3 3 3 0 Zeta toxin CbiQ PF02361.11 gi|20093131|ref|NP_619206.1| - 4e-38 131.2 11.3 6.4e-38 130.5 7.9 1.3 1 0 0 1 1 1 1 Cobalt transport protein DUF3989 PF13150.1 gi|20093131|ref|NP_619206.1| - 2.2 7.7 8.7 4.7 6.7 0.0 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF3989) HTH_5 PF01022.15 gi|20093132|ref|NP_619207.1| - 5.8e-17 61.0 1.0 9.5e-17 60.4 0.7 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20093132|ref|NP_619207.1| - 5.3e-12 45.3 1.1 1e-11 44.4 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Arg_repressor PF01316.16 gi|20093132|ref|NP_619207.1| - 5.2e-06 25.9 0.1 9.7e-06 25.0 0.1 1.4 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain HTH_34 PF13601.1 gi|20093132|ref|NP_619207.1| - 0.00058 19.8 0.1 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|20093132|ref|NP_619207.1| - 0.0025 17.4 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|20093132|ref|NP_619207.1| - 0.0079 15.8 1.4 0.019 14.5 0.9 1.8 1 1 1 2 2 2 1 MarR family MarR PF01047.17 gi|20093132|ref|NP_619207.1| - 0.0082 15.8 0.3 0.018 14.7 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|20093132|ref|NP_619207.1| - 0.04 13.7 0.3 0.081 12.7 0.2 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4423 PF14394.1 gi|20093132|ref|NP_619207.1| - 0.041 13.4 0.1 0.092 12.2 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_1 PF00126.22 gi|20093132|ref|NP_619207.1| - 0.055 13.2 0.2 0.15 11.8 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|20093132|ref|NP_619207.1| - 0.08 13.2 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF318 PF03773.8 gi|20093133|ref|NP_619208.1| - 2.8e-47 161.1 13.7 1.4e-46 158.9 9.1 2.2 1 1 1 2 2 2 1 Predicted permease PspC PF04024.7 gi|20093134|ref|NP_619209.1| - 6.6e-25 86.3 0.3 8.4e-25 86.0 0.2 1.1 1 0 0 1 1 1 1 PspC domain DNA_ligase_A_C PF04679.10 gi|20093134|ref|NP_619209.1| - 0.47 10.8 2.9 6.3 7.2 0.1 2.2 1 1 1 2 2 2 0 ATP dependent DNA ligase C terminal region US2 PF02476.10 gi|20093134|ref|NP_619209.1| - 0.68 10.4 3.8 5.8 7.4 0.2 2.2 1 1 1 2 2 2 0 US2 family Methyltransf_11 PF08241.7 gi|20093135|ref|NP_619210.1| - 2.3e-27 95.2 0.0 3e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093135|ref|NP_619210.1| - 1.4e-25 89.8 0.0 1.8e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|20093135|ref|NP_619210.1| - 9.9e-25 86.8 0.0 1.1e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093135|ref|NP_619210.1| - 1.8e-20 73.2 0.0 2.3e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093135|ref|NP_619210.1| - 5.7e-17 61.8 0.0 6.7e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093135|ref|NP_619210.1| - 2.1e-16 60.4 0.0 2.8e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093135|ref|NP_619210.1| - 5.7e-16 58.7 0.0 7.6e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20093135|ref|NP_619210.1| - 4.2e-11 42.9 0.0 7.7e-11 42.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|20093135|ref|NP_619210.1| - 1.9e-10 40.6 0.0 2.6e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|20093135|ref|NP_619210.1| - 3.4e-07 29.5 0.0 5.5e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|20093135|ref|NP_619210.1| - 1.1e-06 27.9 0.0 1.4e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|20093135|ref|NP_619210.1| - 1.5e-06 28.2 0.0 1.8e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase MetW PF07021.7 gi|20093135|ref|NP_619210.1| - 1.8e-06 27.4 0.1 7.6e-06 25.4 0.1 1.8 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|20093135|ref|NP_619210.1| - 3e-06 27.0 0.0 1.4e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Hypothetical methyltransferase DREV PF05219.7 gi|20093135|ref|NP_619210.1| - 7.3e-06 25.0 0.0 1.1e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase GCD14 PF08704.5 gi|20093135|ref|NP_619210.1| - 9.7e-06 25.2 0.0 1.2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|20093135|ref|NP_619210.1| - 2.3e-05 23.5 0.0 0.0023 16.9 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Fibrillarin PF01269.12 gi|20093135|ref|NP_619210.1| - 0.00017 20.6 0.0 0.00018 20.5 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.1 gi|20093135|ref|NP_619210.1| - 0.00028 21.6 0.0 0.00045 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093135|ref|NP_619210.1| - 0.00064 19.1 0.0 0.0012 18.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|20093135|ref|NP_619210.1| - 0.0011 17.7 0.0 0.0013 17.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|20093135|ref|NP_619210.1| - 0.0017 16.7 0.0 0.0022 16.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|20093135|ref|NP_619210.1| - 0.0031 16.6 0.0 0.0039 16.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|20093135|ref|NP_619210.1| - 0.0058 16.0 0.0 0.0084 15.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0020 PF01170.13 gi|20093135|ref|NP_619210.1| - 0.078 12.5 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CheR PF01739.13 gi|20093135|ref|NP_619210.1| - 0.084 12.1 0.0 4.2 6.6 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Nol1_Nop2_Fmu PF01189.12 gi|20093135|ref|NP_619210.1| - 0.09 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family Methyltransf_3 PF01596.12 gi|20093135|ref|NP_619210.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Aminotran_4 PF01063.14 gi|20093137|ref|NP_619212.1| - 6.8e-49 166.4 0.0 8.2e-49 166.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV PBP_like PF12727.2 gi|20093138|ref|NP_619213.1| - 1.7e-54 183.6 0.0 3.1e-54 182.8 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|20093138|ref|NP_619213.1| - 4.8e-51 172.3 0.2 8e-51 171.6 0.2 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|20093138|ref|NP_619213.1| - 6.8e-29 100.1 0.1 1.2e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|20093138|ref|NP_619213.1| - 8.4e-15 54.4 0.2 5e-14 52.0 0.0 2.5 2 1 1 3 3 3 1 MoeA C-terminal region (domain IV) Phosphonate-bd PF12974.2 gi|20093138|ref|NP_619213.1| - 0.0066 15.8 0.0 0.025 13.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein T2SE PF00437.15 gi|20093138|ref|NP_619213.1| - 0.016 14.1 0.1 0.026 13.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|20093139|ref|NP_619214.1| - 3.2e-18 65.7 0.0 6.7e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|20093139|ref|NP_619214.1| - 3e-16 59.0 0.0 6.1e-16 57.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|20093139|ref|NP_619214.1| - 7.6e-12 44.7 0.1 2e-11 43.4 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|20093139|ref|NP_619214.1| - 0.00077 19.9 0.1 0.0021 18.5 0.0 1.8 2 0 0 2 2 2 1 Miro-like protein Dynamin_N PF00350.18 gi|20093139|ref|NP_619214.1| - 0.0014 18.4 2.2 0.66 9.7 0.2 3.0 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.11 gi|20093139|ref|NP_619214.1| - 0.027 13.5 0.4 0.042 12.9 0.0 1.5 2 0 0 2 2 2 0 AIG1 family DUF2106 PF09879.4 gi|20093139|ref|NP_619214.1| - 0.062 12.6 0.0 0.27 10.5 0.0 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2106) DUF258 PF03193.11 gi|20093139|ref|NP_619214.1| - 0.069 12.3 0.6 0.16 11.1 0.3 1.8 2 1 0 2 2 2 0 Protein of unknown function, DUF258 DUF1192 PF06698.6 gi|20093139|ref|NP_619214.1| - 0.28 11.0 2.6 0.27 11.0 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Dala_Dala_lig_C PF07478.8 gi|20093140|ref|NP_619215.1| - 2e-24 86.1 0.0 3.1e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_11 PF08241.7 gi|20093140|ref|NP_619215.1| - 2.4e-17 63.2 0.0 6.7e-17 61.7 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093140|ref|NP_619215.1| - 4.7e-17 62.2 0.0 6.8e-16 58.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093140|ref|NP_619215.1| - 8.3e-17 61.1 0.0 3e-16 59.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain ATP-grasp_4 PF13535.1 gi|20093140|ref|NP_619215.1| - 1.6e-16 60.5 0.0 5.9e-15 55.4 0.0 2.8 2 1 0 2 2 2 1 ATP-grasp domain Methyltransf_18 PF12847.2 gi|20093140|ref|NP_619215.1| - 1.8e-16 60.7 0.0 7.5e-16 58.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093140|ref|NP_619215.1| - 2.6e-13 49.6 0.0 4.4e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20093140|ref|NP_619215.1| - 6.3e-10 39.1 0.0 8.9e-09 35.4 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093140|ref|NP_619215.1| - 8.4e-10 38.5 0.0 2e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093140|ref|NP_619215.1| - 4.1e-08 33.6 0.0 4.6e-06 27.0 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain ATPgrasp_Ter PF15632.1 gi|20093140|ref|NP_619215.1| - 2.2e-07 29.9 0.0 0.0065 15.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon TehB PF03848.9 gi|20093140|ref|NP_619215.1| - 6.7e-06 25.3 0.0 1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|20093140|ref|NP_619215.1| - 3.3e-05 23.3 0.0 9.2e-05 21.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|20093140|ref|NP_619215.1| - 0.00034 19.8 0.0 0.00054 19.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Pox_MCEL PF03291.11 gi|20093140|ref|NP_619215.1| - 0.00095 18.1 0.0 0.45 9.3 0.0 2.2 1 1 1 2 2 2 2 mRNA capping enzyme Methyltransf_4 PF02390.12 gi|20093140|ref|NP_619215.1| - 0.0039 16.2 0.0 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase UPF0020 PF01170.13 gi|20093140|ref|NP_619215.1| - 0.0065 16.0 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Alk_phosphatase PF00245.15 gi|20093141|ref|NP_619216.1| - 1.8e-91 306.9 0.0 2.4e-91 306.5 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase Metalloenzyme PF01676.13 gi|20093141|ref|NP_619216.1| - 0.00019 20.9 0.0 0.00075 18.9 0.0 1.9 2 0 0 2 2 2 1 Metalloenzyme superfamily URO-D PF01208.12 gi|20093142|ref|NP_619217.1| - 2.5e-96 322.6 0.0 2.8e-96 322.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) FMN_red PF03358.10 gi|20093143|ref|NP_619218.1| - 1.3e-22 79.9 0.0 1.6e-22 79.6 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|20093143|ref|NP_619218.1| - 2.2e-11 43.6 0.0 2.6e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF3965 PF13112.1 gi|20093143|ref|NP_619218.1| - 0.11 11.6 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3965) MalM PF07148.7 gi|20093144|ref|NP_619219.1| - 0.0002 20.8 0.4 0.0015 18.0 0.0 2.0 2 0 0 2 2 2 1 Maltose operon periplasmic protein precursor (MalM) HTH_24 PF13412.1 gi|20093144|ref|NP_619219.1| - 0.0025 17.1 0.9 0.0052 16.1 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|20093144|ref|NP_619219.1| - 0.0042 16.7 1.3 0.0077 15.9 0.9 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|20093144|ref|NP_619219.1| - 0.0095 15.5 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|20093144|ref|NP_619219.1| - 0.0097 15.5 2.6 0.019 14.6 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|20093144|ref|NP_619219.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1616 PF07760.6 gi|20093145|ref|NP_619220.1| - 0.82 8.7 4.5 6.4 5.8 3.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1616) ABC2_membrane_2 PF12679.2 gi|20093146|ref|NP_619221.1| - 8.9e-44 149.4 17.1 1.1e-43 149.0 11.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20093146|ref|NP_619221.1| - 4.2e-19 68.6 31.5 2.9e-18 65.9 21.2 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|20093146|ref|NP_619221.1| - 4.8e-06 26.0 31.2 2.3e-05 23.7 14.9 3.0 3 0 0 3 3 3 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|20093146|ref|NP_619221.1| - 8.5e-05 21.7 30.9 8.5e-05 21.7 21.4 2.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|20093146|ref|NP_619221.1| - 0.00021 20.5 16.5 0.00021 20.5 11.4 3.3 2 1 1 3 3 3 2 ABC-2 type transporter Bap31 PF05529.7 gi|20093146|ref|NP_619221.1| - 0.07 12.5 0.1 0.07 12.5 0.1 1.8 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like ABC_tran PF00005.22 gi|20093147|ref|NP_619222.1| - 1.6e-32 112.6 0.3 4.9e-31 107.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|20093147|ref|NP_619222.1| - 5.6e-11 42.9 3.6 1.9e-07 31.3 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|20093147|ref|NP_619222.1| - 6.8e-05 22.0 7.3 0.0066 15.5 0.1 3.0 2 1 1 3 3 3 2 AAA ATPase domain Miro PF08477.8 gi|20093147|ref|NP_619222.1| - 0.0037 17.7 0.4 0.032 14.7 0.0 2.3 2 1 0 2 2 2 1 Miro-like protein AAA PF00004.24 gi|20093147|ref|NP_619222.1| - 0.01 16.0 0.9 0.1 12.8 0.7 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|20093147|ref|NP_619222.1| - 0.026 14.8 7.6 0.11 12.7 5.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|20093147|ref|NP_619222.1| - 0.035 13.5 0.0 0.094 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|20093147|ref|NP_619222.1| - 0.036 13.9 0.0 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|20093147|ref|NP_619222.1| - 0.052 12.9 0.5 0.14 11.6 0.3 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|20093147|ref|NP_619222.1| - 0.081 12.4 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|20093147|ref|NP_619222.1| - 0.12 11.9 0.4 0.37 10.4 0.2 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|20093147|ref|NP_619222.1| - 0.23 11.3 2.2 7.1 6.5 0.1 3.1 1 1 1 2 2 2 0 AAA domain NPCBM_assoc PF10633.4 gi|20093148|ref|NP_619223.1| - 4.3e-09 36.2 0.0 3e-06 27.2 0.0 2.9 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4625 PF15418.1 gi|20093148|ref|NP_619223.1| - 1.2e-05 25.4 1.0 0.21 11.7 0.0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF4625) DUF2393 PF09624.5 gi|20093148|ref|NP_619223.1| - 0.0039 16.7 0.2 0.0039 16.7 0.1 4.2 2 2 1 3 3 3 1 Protein of unknown function (DUF2393) A2M_N PF01835.14 gi|20093148|ref|NP_619223.1| - 0.018 15.3 0.0 2.9 8.2 0.0 3.0 3 0 0 3 3 3 0 MG2 domain DUF4051 PF13260.1 gi|20093148|ref|NP_619223.1| - 0.028 13.7 1.1 0.055 12.8 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) UPF0233 PF06781.7 gi|20093148|ref|NP_619223.1| - 0.045 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF3753 PF12575.3 gi|20093148|ref|NP_619223.1| - 0.25 11.1 0.1 0.25 11.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) DUF2648 PF10855.3 gi|20093148|ref|NP_619223.1| - 0.95 8.9 4.1 0.31 10.5 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) PAS_3 PF08447.6 gi|20093149|ref|NP_619224.1| - 3.9e-34 116.6 2.7 8.8e-17 60.9 0.1 2.7 3 0 0 3 3 3 2 PAS fold DUF2111 PF09884.4 gi|20093149|ref|NP_619224.1| - 9.1e-33 111.9 1.6 2.1e-32 110.7 0.4 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2111) GAF_2 PF13185.1 gi|20093149|ref|NP_619224.1| - 3.3e-13 50.3 0.0 2.4e-11 44.3 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|20093149|ref|NP_619224.1| - 3.9e-13 49.6 1.6 2.9e-05 24.3 0.1 3.3 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|20093149|ref|NP_619224.1| - 4e-12 45.8 1.3 1.6e-05 24.6 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|20093149|ref|NP_619224.1| - 6.1e-07 29.4 0.1 0.022 14.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_11 PF14598.1 gi|20093149|ref|NP_619224.1| - 1.2e-05 25.2 0.0 0.17 11.8 0.0 2.5 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|20093149|ref|NP_619224.1| - 3.8e-05 23.7 0.0 0.00034 20.7 0.0 2.3 2 0 0 2 2 2 1 GAF domain DUF3237 PF11578.3 gi|20093149|ref|NP_619224.1| - 0.0079 15.5 0.0 1.2 8.4 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3237) GAF PF01590.21 gi|20093149|ref|NP_619224.1| - 0.023 14.7 0.0 0.063 13.3 0.0 1.7 2 0 0 2 2 2 0 GAF domain NosD PF05048.8 gi|20093150|ref|NP_619225.1| - 3.4e-92 307.8 91.3 8.7e-42 142.8 18.0 4.0 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20093150|ref|NP_619225.1| - 3.5e-48 163.3 94.0 2.8e-18 66.1 10.8 4.2 1 1 3 4 4 4 4 Right handed beta helix region B12-binding PF02310.14 gi|20093151|ref|NP_619226.1| - 1.6e-19 69.9 0.3 2.1e-19 69.5 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|20093151|ref|NP_619226.1| - 0.0044 16.4 0.5 0.0059 16.0 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein PTS_IIB PF02302.12 gi|20093151|ref|NP_619226.1| - 0.0066 16.9 2.2 0.25 11.8 0.1 2.3 1 1 1 2 2 2 2 PTS system, Lactose/Cellobiose specific IIB subunit ABC2_membrane_3 PF12698.2 gi|20093152|ref|NP_619227.1| - 4e-45 154.3 20.2 4.7e-45 154.1 14.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|20093152|ref|NP_619227.1| - 5.6e-19 68.0 3.0 1.2e-18 66.9 2.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|20093152|ref|NP_619227.1| - 5.1e-11 42.1 11.2 9.4e-11 41.3 7.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|20093152|ref|NP_619227.1| - 3.4e-06 26.3 21.0 3.4e-06 26.3 14.5 2.7 2 1 1 3 3 3 1 ABC-2 type transporter Git3 PF11710.3 gi|20093152|ref|NP_619227.1| - 0.00086 18.9 4.2 0.095 12.2 2.3 2.5 2 0 0 2 2 2 2 G protein-coupled glucose receptor regulating Gpa2 ABC_tran PF00005.22 gi|20093153|ref|NP_619228.1| - 2.7e-28 98.9 0.0 6.6e-28 97.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.1 gi|20093153|ref|NP_619228.1| - 1.7e-18 66.9 0.1 4.5e-18 65.5 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.1 gi|20093153|ref|NP_619228.1| - 4.8e-12 46.4 1.1 7e-10 39.3 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|20093153|ref|NP_619228.1| - 0.00068 19.6 0.2 0.0014 18.6 0.0 1.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|20093153|ref|NP_619228.1| - 0.00081 18.5 0.4 0.14 11.1 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|20093153|ref|NP_619228.1| - 0.0014 18.8 0.4 0.03 14.4 0.1 2.7 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20093153|ref|NP_619228.1| - 0.0016 17.6 0.0 0.005 16.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|20093153|ref|NP_619228.1| - 0.0022 17.5 0.0 0.014 14.9 0.0 2.2 2 2 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|20093153|ref|NP_619228.1| - 0.0026 18.1 5.5 0.016 15.5 2.8 2.6 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|20093153|ref|NP_619228.1| - 0.0051 16.0 0.1 1.1 8.4 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|20093153|ref|NP_619228.1| - 0.0051 16.4 0.1 0.024 14.2 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|20093153|ref|NP_619228.1| - 0.01 15.5 0.2 0.081 12.6 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase AAA_29 PF13555.1 gi|20093153|ref|NP_619228.1| - 0.011 15.2 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|20093153|ref|NP_619228.1| - 0.011 14.1 0.0 0.41 9.0 0.0 2.2 1 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|20093153|ref|NP_619228.1| - 0.014 15.1 0.4 2.2 7.9 0.0 2.9 2 1 1 3 3 3 0 NTPase SbcCD_C PF13558.1 gi|20093153|ref|NP_619228.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|20093153|ref|NP_619228.1| - 0.035 13.8 0.0 0.095 12.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|20093153|ref|NP_619228.1| - 0.044 13.9 0.2 0.19 11.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|20093153|ref|NP_619228.1| - 0.052 12.9 0.1 7.7 5.8 0.0 2.9 3 1 0 3 3 3 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|20093153|ref|NP_619228.1| - 0.071 12.8 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|20093153|ref|NP_619228.1| - 0.071 12.5 1.2 0.17 11.3 0.0 2.2 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|20093153|ref|NP_619228.1| - 0.092 13.5 0.6 0.35 11.7 0.2 2.2 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|20093153|ref|NP_619228.1| - 0.095 12.6 1.1 2.4 8.0 0.1 3.0 2 2 1 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|20093153|ref|NP_619228.1| - 0.16 11.8 0.2 1.7 8.5 0.0 2.4 3 0 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.18 gi|20093153|ref|NP_619228.1| - 0.22 11.4 0.6 1.6 8.6 0.4 2.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase RibD_C PF01872.12 gi|20093154|ref|NP_619229.1| - 7.2e-13 48.5 0.0 2.8e-12 46.6 0.0 1.7 1 1 0 1 1 1 1 RibD C-terminal domain IspD PF01128.14 gi|20093154|ref|NP_619229.1| - 0.034 13.6 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Oxidored_q1 PF00361.15 gi|20093155|ref|NP_619230.1| - 2.4e-59 200.8 21.8 2.4e-59 200.8 15.1 2.8 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|20093158|ref|NP_619233.1| - 2.4e-46 158.1 18.9 2.4e-46 158.1 13.1 2.3 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4212 PF13937.1 gi|20093158|ref|NP_619233.1| - 1.2 9.1 6.1 0.73 9.8 1.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) Complex1_49kDa PF00346.14 gi|20093159|ref|NP_619234.1| - 7.9e-22 77.5 0.0 6.8e-21 74.4 0.0 2.0 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|20093159|ref|NP_619234.1| - 3.4e-21 75.4 0.0 6.2e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|20093159|ref|NP_619234.1| - 4.1e-09 35.7 0.1 0.00015 20.6 0.0 2.3 2 0 0 2 2 2 2 Nickel-dependent hydrogenase DUF1144 PF06610.8 gi|20093159|ref|NP_619234.1| - 0.006 16.3 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1144) Oxidored_q6 PF01058.17 gi|20093160|ref|NP_619235.1| - 7.6e-23 80.5 0.0 9.9e-23 80.1 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Methyltransf_11 PF08241.7 gi|20093161|ref|NP_619236.1| - 3.5e-25 88.3 0.0 5.7e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093161|ref|NP_619236.1| - 2e-22 79.4 0.0 2.7e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093161|ref|NP_619236.1| - 1.9e-16 60.6 0.0 2.7e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093161|ref|NP_619236.1| - 1.1e-15 57.4 0.0 1.9e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|20093161|ref|NP_619236.1| - 8.7e-15 54.9 0.1 1.5e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093161|ref|NP_619236.1| - 4.8e-14 52.6 0.0 7.8e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093161|ref|NP_619236.1| - 3.3e-13 49.6 0.0 4.9e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20093161|ref|NP_619236.1| - 7.8e-11 42.0 0.0 2e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093161|ref|NP_619236.1| - 9e-08 31.6 0.0 1.4e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|20093161|ref|NP_619236.1| - 1.5e-07 31.1 0.0 2.2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|20093161|ref|NP_619236.1| - 1.2e-05 24.5 0.0 1.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|20093161|ref|NP_619236.1| - 1.4e-05 24.3 0.0 2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|20093161|ref|NP_619236.1| - 2.1e-05 24.0 0.1 4.7e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_3 PF01596.12 gi|20093161|ref|NP_619236.1| - 2.1e-05 23.6 0.0 3.3e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.13 gi|20093161|ref|NP_619236.1| - 3e-05 23.6 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TehB PF03848.9 gi|20093161|ref|NP_619236.1| - 4.5e-05 22.6 0.0 6.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_24 PF13578.1 gi|20093161|ref|NP_619236.1| - 0.00025 21.8 0.0 0.00043 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.11 gi|20093161|ref|NP_619236.1| - 0.00036 19.5 0.1 0.00056 18.8 0.0 1.2 1 0 0 1 1 1 1 mRNA capping enzyme Methyltransf_32 PF13679.1 gi|20093161|ref|NP_619236.1| - 0.0011 18.5 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|20093161|ref|NP_619236.1| - 0.013 13.9 0.0 0.015 13.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ADH_zinc_N PF00107.21 gi|20093161|ref|NP_619236.1| - 0.016 14.7 0.0 0.033 13.7 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase UPF0146 PF03686.8 gi|20093161|ref|NP_619236.1| - 0.039 13.7 0.1 0.067 13.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) DUF1724 PF08350.5 gi|20093162|ref|NP_619237.1| - 1.2e-26 92.0 0.3 2.4e-26 91.0 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.7 gi|20093162|ref|NP_619237.1| - 0.00097 18.7 0.1 0.0019 17.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain Phage_rep_org_N PF09681.5 gi|20093162|ref|NP_619237.1| - 0.0096 15.4 1.9 0.053 13.0 0.1 2.3 2 1 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.14 gi|20093162|ref|NP_619237.1| - 0.01 15.5 0.1 0.024 14.3 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|20093162|ref|NP_619237.1| - 0.023 15.0 0.0 0.044 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|20093162|ref|NP_619237.1| - 0.061 13.0 0.1 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|20093162|ref|NP_619237.1| - 0.064 13.0 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Response_reg PF00072.19 gi|20093163|ref|NP_619238.1| - 3.5e-28 97.8 0.7 3.8e-28 97.7 0.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain NCD1 PF04904.8 gi|20093163|ref|NP_619238.1| - 0.079 12.7 0.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 NAB conserved region 1 (NCD1) Response_reg PF00072.19 gi|20093164|ref|NP_619239.1| - 1.1e-34 118.8 0.5 2.7e-16 59.5 0.0 2.8 2 0 0 2 2 2 2 Response regulator receiver domain CHASE4 PF05228.8 gi|20093164|ref|NP_619239.1| - 2.1e-33 115.1 0.0 1.1e-32 112.8 0.0 2.1 2 0 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.21 gi|20093164|ref|NP_619239.1| - 6.1e-33 112.8 0.0 1.2e-32 111.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|20093164|ref|NP_619239.1| - 5.4e-20 71.1 0.1 6.3e-19 67.7 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|20093164|ref|NP_619239.1| - 1.5e-12 47.5 0.0 3.3e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|20093164|ref|NP_619239.1| - 1.6e-11 44.5 0.0 4.2e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|20093164|ref|NP_619239.1| - 8.5e-07 28.7 0.0 2.1e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold HAMP PF00672.20 gi|20093164|ref|NP_619239.1| - 0.00047 20.2 0.1 0.00047 20.2 0.1 2.2 3 0 0 3 3 2 1 HAMP domain PAS_10 PF13596.1 gi|20093164|ref|NP_619239.1| - 0.002 18.3 0.0 0.005 17.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|20093164|ref|NP_619239.1| - 0.0058 16.2 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|20093164|ref|NP_619239.1| - 0.013 15.1 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Thioredoxin_6 PF13848.1 gi|20093164|ref|NP_619239.1| - 0.027 14.2 0.0 0.37 10.5 0.0 2.6 2 0 0 2 2 2 0 Thioredoxin-like domain DUF2328 PF10090.4 gi|20093164|ref|NP_619239.1| - 0.12 11.5 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2328) E1-E2_ATPase PF00122.15 gi|20093165|ref|NP_619240.1| - 1e-70 237.4 1.1 4.2e-70 235.3 0.5 2.2 1 1 1 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|20093165|ref|NP_619240.1| - 5.4e-45 153.1 3.3 5.4e-45 153.1 2.3 2.6 2 1 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|20093165|ref|NP_619240.1| - 2e-37 129.6 0.0 8.8e-37 127.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|20093165|ref|NP_619240.1| - 6.3e-19 67.2 0.0 1.9e-18 65.7 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|20093165|ref|NP_619240.1| - 6.7e-19 67.6 0.0 1.4e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|20093165|ref|NP_619240.1| - 6.4e-17 62.3 0.0 1.7e-16 61.0 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20093165|ref|NP_619240.1| - 1.4e-09 37.9 1.7 1.2e-05 25.0 1.1 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|20093165|ref|NP_619240.1| - 0.018 15.2 0.0 0.048 13.8 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF3650 PF12368.3 gi|20093165|ref|NP_619240.1| - 0.039 13.4 2.7 0.19 11.2 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3650) Cir_Bir_Yir PF06022.6 gi|20093165|ref|NP_619240.1| - 0.19 10.9 0.1 0.32 10.1 0.0 1.3 1 0 0 1 1 1 0 Plasmodium variant antigen protein Cir/Yir/Bir URO-D PF01208.12 gi|20093166|ref|NP_619241.1| - 8.4e-90 301.1 0.1 9.5e-90 300.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF4445 PF14574.1 gi|20093167|ref|NP_619242.1| - 3.4e-98 328.5 5.1 4.7e-98 328.1 3.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|20093167|ref|NP_619242.1| - 1.6e-06 28.4 10.5 5.3e-06 26.7 7.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20093167|ref|NP_619242.1| - 4e-06 26.4 10.6 0.0014 18.4 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|20093167|ref|NP_619242.1| - 7.9e-06 26.0 10.1 1.7e-05 24.9 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20093167|ref|NP_619242.1| - 2e-05 24.0 3.8 2e-05 24.0 2.7 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20093167|ref|NP_619242.1| - 4.3e-05 23.2 12.6 0.00046 19.9 9.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20093167|ref|NP_619242.1| - 7.4e-05 23.1 3.1 0.0036 17.6 0.0 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20093167|ref|NP_619242.1| - 8.9e-05 23.1 9.8 0.00039 21.1 1.3 2.5 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|20093167|ref|NP_619242.1| - 0.00018 21.3 12.3 0.0012 18.6 2.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|20093167|ref|NP_619242.1| - 0.00034 20.4 4.1 0.0007 19.4 2.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20093167|ref|NP_619242.1| - 0.00068 19.9 4.3 0.012 15.9 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20093167|ref|NP_619242.1| - 0.0029 17.8 13.3 0.0054 16.9 2.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20093167|ref|NP_619242.1| - 0.0032 17.2 11.6 0.013 15.3 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|20093167|ref|NP_619242.1| - 0.004 17.6 17.7 0.065 13.8 4.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20093167|ref|NP_619242.1| - 0.028 14.4 1.6 0.028 14.4 1.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20093167|ref|NP_619242.1| - 8 7.1 11.0 1.2e+02 3.3 7.6 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain cobW PF02492.14 gi|20093168|ref|NP_619243.1| - 4.4e-36 123.9 1.1 4.4e-36 123.9 0.8 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|20093168|ref|NP_619243.1| - 0.00029 20.3 1.5 0.00077 18.9 1.0 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|20093168|ref|NP_619243.1| - 0.0014 18.1 1.2 0.0022 17.4 0.4 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|20093168|ref|NP_619243.1| - 0.0029 17.3 1.8 0.022 14.4 1.2 2.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|20093168|ref|NP_619243.1| - 0.018 14.2 0.0 0.056 12.6 0.0 1.8 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_31 PF13614.1 gi|20093168|ref|NP_619243.1| - 0.021 14.7 0.0 0.057 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|20093168|ref|NP_619243.1| - 0.027 14.2 0.2 0.055 13.2 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|20093168|ref|NP_619243.1| - 0.11 11.2 3.2 0.049 12.3 0.5 1.6 2 0 0 2 2 2 0 ArgK protein cobW PF02492.14 gi|20093169|ref|NP_619244.1| - 2.1e-34 118.5 1.0 3.4e-34 117.8 0.7 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|20093169|ref|NP_619244.1| - 0.00018 20.9 2.5 0.0008 18.8 0.4 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|20093169|ref|NP_619244.1| - 0.00024 20.5 1.5 0.00079 18.8 1.1 1.9 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|20093169|ref|NP_619244.1| - 0.00081 18.2 0.1 0.0018 17.1 0.1 1.5 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|20093169|ref|NP_619244.1| - 0.0013 18.4 5.4 0.0018 17.9 1.0 3.0 3 1 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.9 gi|20093169|ref|NP_619244.1| - 0.004 16.1 0.2 0.009 14.9 0.1 1.5 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_19 PF13245.1 gi|20093169|ref|NP_619244.1| - 0.014 15.1 1.0 0.025 14.3 0.2 1.7 2 0 0 2 2 2 0 Part of AAA domain AAA_31 PF13614.1 gi|20093169|ref|NP_619244.1| - 0.015 15.2 0.1 0.052 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|20093169|ref|NP_619244.1| - 0.021 14.4 1.7 0.025 14.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF2922 PF11148.3 gi|20093169|ref|NP_619244.1| - 0.11 12.1 0.2 0.11 12.1 0.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2922) KTI12 PF08433.5 gi|20093169|ref|NP_619244.1| - 0.17 11.0 4.4 0.28 10.3 0.0 2.7 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Zip PF02535.17 gi|20093169|ref|NP_619244.1| - 0.39 9.6 4.7 0.55 9.1 3.3 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter DUF1724 PF08350.5 gi|20093170|ref|NP_619245.1| - 1.8e-25 88.2 0.0 3e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|20093170|ref|NP_619245.1| - 0.0019 18.4 0.0 0.0032 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|20093170|ref|NP_619245.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family URO-D PF01208.12 gi|20093171|ref|NP_619246.1| - 7.6e-42 143.4 0.3 3.5e-41 141.2 0.1 2.1 2 1 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|20093171|ref|NP_619246.1| - 1.2e-20 73.5 0.3 3.2e-20 72.2 0.2 1.7 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20093171|ref|NP_619246.1| - 3.7e-17 62.1 0.6 1e-16 60.7 0.4 1.8 1 0 0 1 1 1 1 B12 binding domain Robl_LC7 PF03259.12 gi|20093171|ref|NP_619246.1| - 0.079 12.5 0.1 0.18 11.3 0.1 1.6 1 0 0 1 1 1 0 Roadblock/LC7 domain Cpn60_TCP1 PF00118.19 gi|20093173|ref|NP_619248.1| - 3.7e-119 398.5 8.9 4.3e-119 398.2 6.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dala_Dala_lig_C PF07478.8 gi|20093173|ref|NP_619248.1| - 0.0054 16.1 0.2 0.5 9.7 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus cobW PF02492.14 gi|20093176|ref|NP_619251.1| - 1.3e-35 122.4 0.1 2.2e-35 121.6 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|20093176|ref|NP_619251.1| - 1.6e-05 24.6 0.2 3.5e-05 23.5 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|20093176|ref|NP_619251.1| - 0.0014 17.4 0.5 0.058 12.1 0.2 2.3 2 0 0 2 2 2 1 ArgK protein SRP54 PF00448.17 gi|20093176|ref|NP_619251.1| - 0.0017 17.8 0.2 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|20093176|ref|NP_619251.1| - 0.0028 16.3 0.6 0.0047 15.6 0.4 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|20093176|ref|NP_619251.1| - 0.0031 16.4 0.3 0.0055 15.6 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|20093176|ref|NP_619251.1| - 0.011 15.1 0.1 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|20093176|ref|NP_619251.1| - 0.017 15.4 0.9 0.042 14.1 0.3 1.9 2 0 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.12 gi|20093176|ref|NP_619251.1| - 0.021 14.3 0.1 0.099 12.1 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|20093176|ref|NP_619251.1| - 0.037 13.1 0.1 0.065 12.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|20093176|ref|NP_619251.1| - 0.047 14.5 0.5 0.14 12.9 0.4 1.7 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|20093176|ref|NP_619251.1| - 0.057 12.8 0.0 5.1 6.4 0.0 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Viral_helicase1 PF01443.13 gi|20093176|ref|NP_619251.1| - 0.062 12.8 0.6 0.16 11.4 0.0 1.9 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|20093176|ref|NP_619251.1| - 0.091 12.9 0.1 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|20093176|ref|NP_619251.1| - 0.094 12.4 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain B12-binding PF02310.14 gi|20093178|ref|NP_619253.1| - 5.5e-20 71.4 0.4 9.3e-20 70.7 0.3 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|20093178|ref|NP_619253.1| - 8.1e-15 54.6 0.0 1.9e-14 53.4 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Mut7-C PF01927.11 gi|20093178|ref|NP_619253.1| - 0.06 13.3 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain MtaB PF12176.3 gi|20093179|ref|NP_619254.1| - 1.8e-254 844.3 7.8 2e-254 844.1 5.4 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit DUF1493 PF07377.7 gi|20093179|ref|NP_619254.1| - 0.044 13.8 0.2 4.1 7.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1493) Grp1_Fun34_YaaH PF01184.14 gi|20093180|ref|NP_619255.1| - 1.2e-39 135.7 31.0 1.4e-39 135.5 21.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Cation_efflux PF01545.16 gi|20093181|ref|NP_619256.1| - 1.7e-47 161.8 0.2 1.9e-47 161.7 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family Hydantoinase_A PF01968.13 gi|20093182|ref|NP_619257.1| - 1.4e-85 286.9 0.4 1.8e-84 283.3 0.0 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20093182|ref|NP_619257.1| - 4.8e-44 149.9 0.3 3.7e-40 137.3 0.0 2.7 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20093182|ref|NP_619257.1| - 3e-06 25.8 0.8 0.033 12.5 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20093182|ref|NP_619257.1| - 0.00057 19.2 0.4 0.44 9.8 0.0 3.6 4 0 0 4 4 4 1 BadF/BadG/BcrA/BcrD ATPase family EutA PF06277.6 gi|20093182|ref|NP_619257.1| - 0.024 13.2 0.1 0.64 8.5 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA KH_5 PF13184.1 gi|20093182|ref|NP_619257.1| - 0.05 13.4 1.1 12 5.8 0.0 3.1 3 1 0 3 3 3 0 NusA-like KH domain FtsA PF14450.1 gi|20093182|ref|NP_619257.1| - 0.24 11.2 1.3 5.3 6.8 0.0 2.7 2 0 0 2 2 2 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|20093183|ref|NP_619258.1| - 1.1e-80 270.9 0.6 7.3e-80 268.1 0.0 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20093183|ref|NP_619258.1| - 1.1e-46 158.5 0.1 8.4e-43 145.9 0.0 2.8 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20093183|ref|NP_619258.1| - 2.8e-06 25.9 1.3 0.0015 16.9 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20093183|ref|NP_619258.1| - 0.0028 17.0 0.1 0.25 10.6 0.0 2.6 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family DDR PF08841.5 gi|20093183|ref|NP_619258.1| - 0.034 12.9 0.3 0.067 12.0 0.2 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain FtsA PF14450.1 gi|20093183|ref|NP_619258.1| - 0.038 13.8 1.8 1.3 8.9 0.1 2.6 2 1 0 2 2 2 0 Cell division protein FtsA DUF1724 PF08350.5 gi|20093184|ref|NP_619259.1| - 2.1e-28 97.6 0.1 4e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|20093184|ref|NP_619259.1| - 0.00087 19.5 0.2 0.0019 18.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|20093184|ref|NP_619259.1| - 0.0018 18.0 0.6 0.0073 16.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix TrmB PF01978.14 gi|20093184|ref|NP_619259.1| - 0.013 15.2 0.1 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|20093184|ref|NP_619259.1| - 0.053 13.2 0.4 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 MarR family AraC_binding PF02311.14 gi|20093184|ref|NP_619259.1| - 0.095 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain DUF1724 PF08350.5 gi|20093185|ref|NP_619260.1| - 1.5e-28 98.1 0.3 4.1e-28 96.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20093185|ref|NP_619260.1| - 0.0016 18.0 0.2 0.0031 17.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20093185|ref|NP_619260.1| - 0.029 14.6 0.1 0.058 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain ParcG PF10274.4 gi|20093185|ref|NP_619260.1| - 0.033 14.0 0.1 0.063 13.1 0.1 1.5 1 0 0 1 1 1 0 Parkin co-regulated protein HTH_20 PF12840.2 gi|20093185|ref|NP_619260.1| - 0.06 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|20093185|ref|NP_619260.1| - 0.13 11.8 1.1 0.23 11.0 0.1 1.9 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Prismane PF03063.15 gi|20093186|ref|NP_619261.1| - 1.1e-118 396.9 3.0 2e-99 333.3 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_21 PF14697.1 gi|20093186|ref|NP_619261.1| - 1.1e-06 28.4 7.2 1.1e-06 28.4 5.0 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20093186|ref|NP_619261.1| - 1.1e-06 28.5 7.3 1.1e-06 28.5 5.1 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093186|ref|NP_619261.1| - 1.9e-06 28.0 9.2 1.9e-06 28.0 6.4 2.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20093186|ref|NP_619261.1| - 5.3e-06 26.1 11.0 5.3e-06 26.1 7.6 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20093186|ref|NP_619261.1| - 1.6e-05 25.2 11.0 0.0033 17.7 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20093186|ref|NP_619261.1| - 1.9e-05 24.9 9.4 1.9e-05 24.9 6.5 2.7 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20093186|ref|NP_619261.1| - 5.8e-05 22.7 1.5 5.8e-05 22.7 1.0 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20093186|ref|NP_619261.1| - 0.00042 19.7 25.3 0.00058 19.3 2.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|20093186|ref|NP_619261.1| - 0.00049 19.8 21.9 0.0047 16.7 2.0 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20093186|ref|NP_619261.1| - 0.0011 19.3 0.2 0.0011 19.3 0.2 3.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|20093186|ref|NP_619261.1| - 0.027 15.0 4.7 2.8 8.5 0.2 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|20093186|ref|NP_619261.1| - 0.065 13.6 26.7 0.28 11.6 2.9 4.0 3 0 0 3 3 3 0 4Fe-4S binding domain DUF1890 PF09001.6 gi|20093186|ref|NP_619261.1| - 0.096 12.6 0.0 6.5 6.7 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) Fer4_20 PF14691.1 gi|20093186|ref|NP_619261.1| - 0.35 10.4 7.2 5.4 6.6 5.1 2.4 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|20093186|ref|NP_619261.1| - 3.5 8.0 9.9 3.4 8.1 0.8 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|20093186|ref|NP_619261.1| - 7 7.4 16.8 0.45 11.2 0.1 3.1 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Y_Y_Y PF07495.8 gi|20093187|ref|NP_619262.1| - 0.058 13.1 0.2 0.13 11.9 0.1 1.6 2 0 0 2 2 2 0 Y_Y_Y domain Exo5 PF09810.4 gi|20093187|ref|NP_619262.1| - 0.089 12.0 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease SH3_1 PF00018.23 gi|20093187|ref|NP_619262.1| - 0.12 11.8 0.1 1.3 8.4 0.1 2.2 1 1 0 1 1 1 0 SH3 domain MMR_HSR1_C PF08438.5 gi|20093188|ref|NP_619263.1| - 4.4e-35 120.2 0.0 7.3e-35 119.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|20093188|ref|NP_619263.1| - 1.6e-15 57.0 0.0 4.1e-15 55.7 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|20093188|ref|NP_619263.1| - 4.7e-14 51.9 0.0 1.2e-13 50.6 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|20093188|ref|NP_619263.1| - 6.9e-09 35.1 0.3 5.6e-07 28.9 0.0 2.8 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|20093188|ref|NP_619263.1| - 0.082 12.3 0.4 4.7 6.5 0.0 2.7 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain Prenyltransf PF01255.14 gi|20093189|ref|NP_619264.1| - 1e-30 106.5 0.0 1.9e-29 102.3 0.0 2.2 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase Zn_Tnp_IS1595 PF12760.2 gi|20093190|ref|NP_619265.1| - 0.0029 17.3 2.1 0.0049 16.6 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF1922 PF09082.5 gi|20093190|ref|NP_619265.1| - 0.0071 16.3 0.5 0.0071 16.3 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1922) DUF2296 PF10058.4 gi|20093190|ref|NP_619265.1| - 0.01 15.5 0.4 0.024 14.3 0.3 1.7 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_S27e PF01667.12 gi|20093190|ref|NP_619265.1| - 0.013 15.0 1.4 0.021 14.3 1.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-BED PF02892.10 gi|20093190|ref|NP_619265.1| - 0.029 14.1 1.0 0.066 12.9 0.7 1.7 1 0 0 1 1 1 0 BED zinc finger DNA_RNApol_7kD PF03604.8 gi|20093190|ref|NP_619265.1| - 0.043 13.2 2.5 0.076 12.5 1.7 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|20093190|ref|NP_619265.1| - 0.051 13.2 0.6 0.1 12.2 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|20093190|ref|NP_619265.1| - 0.064 13.0 3.0 0.095 12.5 1.6 1.6 1 1 1 2 2 2 0 Double zinc ribbon DUF655 PF04919.7 gi|20093190|ref|NP_619265.1| - 0.071 12.8 0.0 0.62 9.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF655) TF_Zn_Ribbon PF08271.7 gi|20093190|ref|NP_619265.1| - 0.081 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|20093190|ref|NP_619265.1| - 0.083 12.4 5.6 0.6 9.6 2.8 2.5 2 1 1 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|20093190|ref|NP_619265.1| - 0.096 12.4 0.8 0.18 11.6 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|20093190|ref|NP_619265.1| - 0.13 11.9 2.7 0.21 11.2 0.9 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain SelB-wing_2 PF09106.6 gi|20093190|ref|NP_619265.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix zf-C4_Topoisom PF01396.14 gi|20093190|ref|NP_619265.1| - 0.95 9.0 3.5 1.8 8.1 0.3 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF164 PF02591.10 gi|20093190|ref|NP_619265.1| - 1 9.2 3.7 1.2 8.9 0.1 2.2 1 1 1 2 2 2 0 Putative zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|20093190|ref|NP_619265.1| - 1 9.3 4.1 15 5.6 3.0 2.2 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|20093190|ref|NP_619265.1| - 1.2 8.9 4.6 3.5 7.4 3.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|20093190|ref|NP_619265.1| - 1.3 8.3 4.1 19 4.6 2.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|20093190|ref|NP_619265.1| - 1.4 8.5 5.3 4.7 6.8 3.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|20093190|ref|NP_619265.1| - 2 8.1 5.5 6.7 6.4 3.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF1610 PF07754.6 gi|20093190|ref|NP_619265.1| - 4.2 7.5 7.0 27 5.0 1.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Mu-like_Com PF10122.4 gi|20093190|ref|NP_619265.1| - 4.7 6.3 8.6 2.2 7.3 1.6 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-H2C2_2 PF13465.1 gi|20093190|ref|NP_619265.1| - 6.6 7.2 7.1 2.7 8.4 0.2 2.5 1 1 1 2 2 2 0 Zinc-finger double domain DUF128 PF01995.11 gi|20093191|ref|NP_619266.1| - 3.3e-95 317.5 0.4 4.4e-95 317.1 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|20093191|ref|NP_619266.1| - 1.3e-31 108.1 0.5 2.5e-31 107.2 0.3 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.1 gi|20093191|ref|NP_619266.1| - 0.07 13.1 0.5 0.14 12.2 0.4 1.5 1 0 0 1 1 1 0 HTH-like domain Lactamase_B PF00753.22 gi|20093192|ref|NP_619267.1| - 1e-13 51.3 0.0 2.6e-13 50.0 0.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|20093192|ref|NP_619267.1| - 8.3e-09 35.2 0.0 9.2e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|20093193|ref|NP_619268.1| - 8.8e-21 74.6 0.0 2.2e-20 73.3 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|20093193|ref|NP_619268.1| - 1.6e-09 38.1 0.1 5.5e-05 23.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|20093193|ref|NP_619268.1| - 2.1e-05 23.8 0.0 0.0045 16.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|20093193|ref|NP_619268.1| - 0.0016 18.7 0.0 0.0038 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|20093193|ref|NP_619268.1| - 0.0037 16.4 0.0 0.0074 15.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|20093193|ref|NP_619268.1| - 0.0057 16.1 0.0 0.013 15.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|20093193|ref|NP_619268.1| - 0.02 13.3 0.0 0.028 12.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|20093193|ref|NP_619268.1| - 0.04 13.3 0.1 0.081 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain EF-hand_10 PF14788.1 gi|20093193|ref|NP_619268.1| - 0.051 13.2 0.0 0.22 11.1 0.0 2.0 2 0 0 2 2 2 0 EF hand Adeno_IVa2 PF02456.10 gi|20093193|ref|NP_619268.1| - 0.06 11.9 0.0 0.08 11.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein MutS_V PF00488.16 gi|20093193|ref|NP_619268.1| - 0.064 12.6 0.0 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 MutS domain V Arch_ATPase PF01637.13 gi|20093193|ref|NP_619268.1| - 0.08 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase Lectin_legB PF00139.14 gi|20093193|ref|NP_619268.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Legume lectin domain AAA_22 PF13401.1 gi|20093193|ref|NP_619268.1| - 0.13 12.3 0.0 0.42 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.12 gi|20093194|ref|NP_619269.1| - 1.5e-55 188.1 0.1 2e-55 187.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) TrmB PF01978.14 gi|20093195|ref|NP_619270.1| - 1.3e-06 27.9 0.0 1.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|20093195|ref|NP_619270.1| - 1.1e-05 25.0 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|20093195|ref|NP_619270.1| - 2.4e-05 24.1 0.0 5.2e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|20093195|ref|NP_619270.1| - 9.5e-05 22.0 0.1 0.0002 21.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|20093195|ref|NP_619270.1| - 0.00027 21.1 0.0 0.00049 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|20093195|ref|NP_619270.1| - 0.00046 19.5 0.0 0.0009 18.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|20093195|ref|NP_619270.1| - 0.0013 18.7 0.2 0.0028 17.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|20093195|ref|NP_619270.1| - 0.0015 18.1 0.0 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|20093195|ref|NP_619270.1| - 0.0043 16.8 0.0 0.012 15.3 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|20093195|ref|NP_619270.1| - 0.0059 16.6 0.0 0.0083 16.2 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor Rio2_N PF09202.6 gi|20093195|ref|NP_619270.1| - 0.015 15.3 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal TFIIE_alpha PF02002.12 gi|20093195|ref|NP_619270.1| - 0.019 14.4 0.4 0.026 14.0 0.3 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit SieB PF14163.1 gi|20093195|ref|NP_619270.1| - 0.025 14.1 0.3 0.15 11.6 0.2 1.9 1 1 0 1 1 1 0 Superinfection exclusion protein B FUR PF01475.14 gi|20093195|ref|NP_619270.1| - 0.056 13.3 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family DUF2250 PF10007.4 gi|20093195|ref|NP_619270.1| - 0.083 12.8 0.1 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.16 gi|20093195|ref|NP_619270.1| - 0.086 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|20093195|ref|NP_619270.1| - 0.089 12.8 0.1 0.28 11.2 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|20093195|ref|NP_619270.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fer4_5 PF12801.2 gi|20093196|ref|NP_619271.1| - 5.9e-14 51.5 12.9 2.3e-11 43.2 3.1 3.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.22 gi|20093196|ref|NP_619271.1| - 1.1e-09 37.5 21.8 4.5e-06 26.0 2.2 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|20093196|ref|NP_619271.1| - 6.1e-09 36.1 12.3 0.00046 20.5 1.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|20093196|ref|NP_619271.1| - 7.1e-09 35.1 17.9 7.4e-05 22.4 2.2 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|20093196|ref|NP_619271.1| - 3e-07 30.1 33.2 4.6e-06 26.3 14.1 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093196|ref|NP_619271.1| - 4.4e-07 30.0 30.7 2e-05 24.7 13.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20093196|ref|NP_619271.1| - 6.3e-07 29.2 21.1 0.00053 20.1 3.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|20093196|ref|NP_619271.1| - 2.5e-06 27.4 17.9 0.00061 19.7 3.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|20093196|ref|NP_619271.1| - 4e-06 26.5 16.5 0.0007 19.4 2.2 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20093196|ref|NP_619271.1| - 1.1e-05 25.0 24.3 0.00021 21.0 1.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|20093196|ref|NP_619271.1| - 0.00015 22.4 17.3 0.0058 17.3 1.9 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|20093196|ref|NP_619271.1| - 0.00018 21.8 19.5 0.011 16.0 3.8 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|20093196|ref|NP_619271.1| - 0.00036 20.9 22.9 0.0073 16.7 3.7 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|20093196|ref|NP_619271.1| - 0.0025 18.1 14.7 0.024 15.0 0.7 2.6 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|20093196|ref|NP_619271.1| - 0.0025 18.2 5.1 0.0025 18.2 3.5 4.1 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|20093196|ref|NP_619271.1| - 0.053 14.0 14.1 0.27 11.8 2.0 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4044 PF13253.1 gi|20093196|ref|NP_619271.1| - 1 8.5 4.7 2.3 7.4 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) FAD_binding_4 PF01565.18 gi|20093197|ref|NP_619272.1| - 1e-34 118.9 0.0 2.1e-34 117.9 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|20093197|ref|NP_619272.1| - 4.4e-31 106.7 1.9 2.2e-15 56.4 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|20093197|ref|NP_619272.1| - 2.7e-08 34.0 7.9 7.3e-08 32.6 5.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20093197|ref|NP_619272.1| - 6.8e-06 26.0 7.0 2.3e-05 24.2 4.9 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|20093197|ref|NP_619272.1| - 3.5e-05 23.2 0.0 0.00012 21.4 0.0 2.0 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain Fer4_7 PF12838.2 gi|20093197|ref|NP_619272.1| - 0.0012 19.1 4.1 0.0035 17.6 2.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093197|ref|NP_619272.1| - 0.0045 17.2 5.2 0.0045 17.2 3.6 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20093197|ref|NP_619272.1| - 0.05 13.4 11.2 0.078 12.7 6.5 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain RRM_1 PF00076.17 gi|20093197|ref|NP_619272.1| - 0.079 12.6 0.0 11 5.7 0.0 2.9 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Isochorismatase PF00857.15 gi|20093198|ref|NP_619273.1| - 5e-42 143.7 0.0 5.7e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Cpn60_TCP1 PF00118.19 gi|20093200|ref|NP_619275.1| - 1.9e-164 547.8 14.1 2.4e-164 547.5 9.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF473 PF04322.7 gi|20093201|ref|NP_619276.1| - 5.5e-43 145.3 0.3 6.3e-43 145.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.4 gi|20093202|ref|NP_619277.1| - 4.7e-52 176.9 0.3 5.9e-52 176.6 0.2 1.0 1 0 0 1 1 1 1 PAC2 family PK_C PF02887.11 gi|20093203|ref|NP_619278.1| - 6.8e-21 74.0 1.4 8.8e-21 73.6 1.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Asp_Glu_race PF01177.17 gi|20093203|ref|NP_619278.1| - 0.0022 17.9 0.3 0.0028 17.6 0.2 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pterin_bind PF00809.17 gi|20093203|ref|NP_619278.1| - 0.013 14.8 0.2 0.02 14.2 0.1 1.2 1 0 0 1 1 1 0 Pterin binding enzyme DUF2855 PF11017.3 gi|20093203|ref|NP_619278.1| - 0.014 14.5 0.1 0.019 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) AP_endonuc_2 PF01261.19 gi|20093203|ref|NP_619278.1| - 0.028 13.7 0.0 0.039 13.2 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Semialdhyde_dh PF01118.19 gi|20093203|ref|NP_619278.1| - 0.053 13.8 0.1 0.081 13.2 0.1 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF86 PF01934.12 gi|20093204|ref|NP_619279.1| - 4e-24 84.5 0.2 4.5e-24 84.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 AceK PF06315.6 gi|20093204|ref|NP_619279.1| - 0.055 11.7 0.0 0.055 11.7 0.0 1.0 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) NTP_transf_2 PF01909.18 gi|20093205|ref|NP_619280.1| - 2.5e-11 43.7 0.3 4.3e-11 42.9 0.2 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain TGT PF01702.13 gi|20093206|ref|NP_619281.1| - 1.2e-51 175.3 0.0 1.5e-51 174.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase UbiA PF01040.13 gi|20093207|ref|NP_619282.1| - 5.9e-34 117.4 26.5 7.2e-34 117.1 18.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DAO PF01266.19 gi|20093208|ref|NP_619283.1| - 2e-15 56.5 0.0 1.4e-10 40.6 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|20093208|ref|NP_619283.1| - 1.4e-09 36.9 0.2 2.4e-07 29.5 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|20093208|ref|NP_619283.1| - 1.1e-07 31.2 0.0 0.00029 20.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|20093208|ref|NP_619283.1| - 1.8e-07 30.4 0.0 2.3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|20093208|ref|NP_619283.1| - 2.6e-05 23.4 0.1 8e-05 21.8 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|20093208|ref|NP_619283.1| - 0.00012 22.1 0.0 0.0013 18.8 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|20093208|ref|NP_619283.1| - 0.00013 21.9 0.0 0.00036 20.4 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|20093208|ref|NP_619283.1| - 0.00017 21.5 0.2 0.0008 19.3 0.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20093208|ref|NP_619283.1| - 0.00021 21.6 0.0 0.068 13.5 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|20093208|ref|NP_619283.1| - 0.00024 20.0 0.0 0.0006 18.7 0.0 1.7 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|20093208|ref|NP_619283.1| - 0.0025 16.9 0.5 0.0065 15.5 0.0 1.9 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.17 gi|20093208|ref|NP_619283.1| - 0.0055 15.6 0.1 0.019 13.8 0.0 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|20093208|ref|NP_619283.1| - 0.069 11.7 0.0 4.3 5.8 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Radical_SAM PF04055.16 gi|20093209|ref|NP_619284.1| - 3.6e-17 63.0 0.0 5.6e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|20093209|ref|NP_619284.1| - 8.3e-06 26.0 0.5 2.2e-05 24.6 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|20093209|ref|NP_619284.1| - 0.00034 20.7 0.0 0.00058 19.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|20093209|ref|NP_619284.1| - 0.029 14.3 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain CobN-Mg_chel PF02514.11 gi|20093210|ref|NP_619285.1| - 0 1321.6 0.0 0 1314.9 0.0 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF2149 PF09919.4 gi|20093211|ref|NP_619286.1| - 1.6e-34 117.8 0.1 1.9e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.11 gi|20093212|ref|NP_619287.1| - 1.1e-10 41.2 1.5 1.2e-10 41.1 0.1 1.9 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family DUF2162 PF09930.4 gi|20093213|ref|NP_619288.1| - 2.2e-76 255.9 19.2 2.5e-76 255.7 13.3 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Costars PF14705.1 gi|20093214|ref|NP_619289.1| - 0.064 13.2 2.7 0.55 10.2 0.2 2.9 2 1 0 2 2 2 0 Costars TBPIP PF07106.8 gi|20093214|ref|NP_619289.1| - 0.084 12.4 36.5 0.061 12.8 5.9 3.3 1 1 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Pepsin-I3 PF06394.8 gi|20093214|ref|NP_619289.1| - 3.6 7.3 8.4 3.4 7.4 0.5 3.4 3 0 0 3 3 3 0 Pepsin inhibitor-3-like repeated domain Bul1_C PF04426.7 gi|20093214|ref|NP_619289.1| - 4.2 6.4 21.1 0.5 9.4 1.4 2.7 1 1 0 2 2 2 0 Bul1 C terminus Acyl-CoA_dh_C PF12806.2 gi|20093214|ref|NP_619289.1| - 7.4 6.4 9.3 10 5.9 1.2 2.7 2 1 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like HAD PF12710.2 gi|20093215|ref|NP_619290.1| - 2.3e-17 63.8 0.2 2.8e-17 63.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|20093215|ref|NP_619290.1| - 5.8e-15 56.2 0.9 3.4e-13 50.5 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|20093215|ref|NP_619290.1| - 6.4e-10 39.0 0.0 4.3e-08 33.0 0.0 2.6 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|20093215|ref|NP_619290.1| - 1.3e-09 38.5 0.0 4.4e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|20093215|ref|NP_619290.1| - 1.4e-05 24.3 0.0 0.0084 15.2 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase S6PP PF05116.8 gi|20093215|ref|NP_619290.1| - 0.0044 16.3 0.1 0.54 9.5 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase DUF705 PF05152.7 gi|20093215|ref|NP_619290.1| - 0.035 13.0 0.1 0.053 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF705) DUF373 PF04123.8 gi|20093215|ref|NP_619290.1| - 0.046 12.7 0.0 0.077 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) MTD PF01993.13 gi|20093216|ref|NP_619291.1| - 9.6e-98 326.6 1.3 1.1e-97 326.4 0.9 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase CheD PF03975.8 gi|20093216|ref|NP_619291.1| - 0.054 13.2 0.1 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 CheD chemotactic sensory transduction DUF2111 PF09884.4 gi|20093217|ref|NP_619292.1| - 5.9e-36 122.1 0.2 9.4e-36 121.5 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) dTMP_synthase PF02593.9 gi|20093218|ref|NP_619293.1| - 3.3e-68 229.3 0.0 3.7e-68 229.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DapB_N PF01113.15 gi|20093218|ref|NP_619293.1| - 0.0048 16.8 0.0 0.015 15.1 0.0 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.1 gi|20093218|ref|NP_619293.1| - 0.012 15.7 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain Thymidylate_kin PF02223.12 gi|20093219|ref|NP_619294.1| - 6.6e-46 156.0 0.0 7.6e-46 155.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|20093219|ref|NP_619294.1| - 4.1e-07 30.1 0.0 5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|20093219|ref|NP_619294.1| - 1.7e-06 28.3 0.0 2.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|20093219|ref|NP_619294.1| - 2.4e-05 24.2 0.0 4.5e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|20093219|ref|NP_619294.1| - 0.00017 22.4 0.1 0.00076 20.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20093219|ref|NP_619294.1| - 0.015 15.4 0.1 0.051 13.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|20093219|ref|NP_619294.1| - 0.052 12.7 0.1 0.1 11.7 0.0 1.6 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|20093219|ref|NP_619294.1| - 0.077 12.8 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain CPT PF07931.7 gi|20093219|ref|NP_619294.1| - 0.079 12.5 0.0 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein APS_kinase PF01583.15 gi|20093219|ref|NP_619294.1| - 0.13 11.9 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase His_biosynth PF00977.16 gi|20093221|ref|NP_619296.1| - 2.7e-37 128.2 0.0 3.1e-37 128.0 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PRAI PF00697.17 gi|20093221|ref|NP_619296.1| - 0.064 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF556 PF04476.8 gi|20093222|ref|NP_619297.1| - 1.6e-98 328.6 0.7 1.8e-98 328.4 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) ComA PF02679.10 gi|20093222|ref|NP_619297.1| - 0.11 11.4 0.0 0.21 10.5 0.0 1.4 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DUF457 PF04307.9 gi|20093223|ref|NP_619298.1| - 2.6e-20 72.3 3.7 3.1e-20 72.1 2.5 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) YbjM PF11045.3 gi|20093223|ref|NP_619298.1| - 0.18 11.5 1.3 0.33 10.7 0.6 1.6 1 1 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae DPM3 PF08285.6 gi|20093224|ref|NP_619299.1| - 4.9 7.0 15.8 0.077 12.8 1.5 3.9 3 1 1 4 4 4 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2973 PF11189.3 gi|20093224|ref|NP_619299.1| - 5.3 6.8 5.9 5.4 6.8 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2973) DUF3473 PF11959.3 gi|20093226|ref|NP_619301.1| - 2e-23 82.3 0.0 5.6e-23 80.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|20093226|ref|NP_619301.1| - 1.4e-18 66.6 0.0 2e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Disaggr_repeat PF06848.6 gi|20093228|ref|NP_619303.1| - 1.7e-93 311.0 4.1 3.5e-93 310.0 2.8 1.5 1 0 0 1 1 1 1 Disaggregatase related repeat Pectate_lyase_3 PF12708.2 gi|20093228|ref|NP_619303.1| - 5e-13 49.6 11.2 5e-13 49.6 7.8 2.5 2 1 1 3 3 3 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|20093228|ref|NP_619303.1| - 1.8e-06 27.8 34.1 1.8e-06 27.8 23.7 3.4 1 1 0 2 2 2 1 Right handed beta helix region TGFb_propeptide PF00688.13 gi|20093228|ref|NP_619303.1| - 0.0036 16.6 0.0 0.15 11.2 0.0 2.2 2 0 0 2 2 2 1 TGF-beta propeptide Phage_integrase PF00589.17 gi|20093228|ref|NP_619303.1| - 0.065 12.8 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Phage integrase family Disaggr_repeat PF06848.6 gi|20093230|ref|NP_619305.1| - 1.2e-92 308.3 3.0 2.2e-92 307.4 2.1 1.5 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|20093230|ref|NP_619305.1| - 4.9e-73 244.7 13.5 4.9e-73 244.7 9.3 2.9 2 1 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.1 gi|20093230|ref|NP_619305.1| - 3.2e-15 56.2 67.3 3.2e-09 36.7 11.2 3.6 1 1 1 2 2 2 2 Right handed beta helix region DUF457 PF04307.9 gi|20093231|ref|NP_619306.1| - 2.1e-06 27.1 2.4 2.6e-06 26.8 1.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Glycos_transf_2 PF00535.21 gi|20093232|ref|NP_619307.1| - 1.1e-27 96.7 0.0 3.5e-23 82.1 0.0 2.6 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20093232|ref|NP_619307.1| - 9.1e-07 28.8 0.1 2.4e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|20093232|ref|NP_619307.1| - 8.9e-06 25.9 0.0 0.00058 20.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 2 GFO_IDH_MocA PF01408.17 gi|20093234|ref|NP_619309.1| - 6.3e-30 104.1 0.1 9.8e-30 103.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|20093234|ref|NP_619309.1| - 1.1e-06 28.3 0.0 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|20093234|ref|NP_619309.1| - 0.00019 21.6 0.0 0.00037 20.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|20093234|ref|NP_619309.1| - 0.039 13.8 0.3 0.11 12.4 0.2 2.0 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_3 PF13440.1 gi|20093236|ref|NP_619311.1| - 2.2e-22 79.7 11.7 2.2e-22 79.7 8.1 2.4 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|20093236|ref|NP_619311.1| - 4.1e-17 62.3 22.9 4.1e-17 62.3 15.9 2.8 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|20093236|ref|NP_619311.1| - 1.7e-06 26.7 15.0 1.7e-06 26.7 10.4 2.9 1 1 1 2 2 2 2 MviN-like protein Glycos_transf_1 PF00534.15 gi|20093238|ref|NP_619313.1| - 1e-31 109.6 0.0 1.8e-31 108.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|20093238|ref|NP_619313.1| - 2.6e-25 89.1 0.1 3.8e-25 88.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|20093238|ref|NP_619313.1| - 2.4e-14 53.3 0.0 4.5e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|20093238|ref|NP_619313.1| - 6.4e-11 42.2 0.0 1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|20093238|ref|NP_619313.1| - 7.3e-08 32.7 0.0 1.2e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|20093238|ref|NP_619313.1| - 1.9e-05 24.5 0.0 4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|20093239|ref|NP_619314.1| - 5.3e-15 55.5 0.0 4.8e-14 52.4 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|20093239|ref|NP_619314.1| - 2.8e-09 37.1 0.0 6.5e-08 32.6 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|20093239|ref|NP_619314.1| - 2.4e-05 24.1 0.0 0.011 15.5 0.0 2.1 1 1 0 2 2 2 2 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|20093239|ref|NP_619314.1| - 0.025 14.9 0.0 0.053 13.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|20093239|ref|NP_619314.1| - 0.063 12.5 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Polysacc_deac_1 PF01522.16 gi|20093240|ref|NP_619315.1| - 0.0029 17.2 0.0 0.012 15.2 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.3 gi|20093240|ref|NP_619315.1| - 0.15 11.4 0.0 0.38 10.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3473) PDEase_I PF00233.14 gi|20093240|ref|NP_619315.1| - 0.18 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase DUF3362 PF11842.3 gi|20093240|ref|NP_619315.1| - 0.18 11.6 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3362) DUF354 PF04007.7 gi|20093241|ref|NP_619316.1| - 2.8e-35 121.7 0.0 3.8e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|20093241|ref|NP_619316.1| - 0.0019 18.0 1.5 0.0036 17.1 0.4 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like BRCA2 PF00634.13 gi|20093241|ref|NP_619316.1| - 0.097 11.9 0.0 0.24 10.7 0.0 1.7 1 0 0 1 1 1 0 BRCA2 repeat UDPG_MGDP_dh_N PF03721.9 gi|20093243|ref|NP_619318.1| - 6.3e-67 224.5 1.0 9.7e-67 223.9 0.7 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|20093243|ref|NP_619318.1| - 5.9e-35 119.3 0.0 1.4e-34 118.1 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|20093243|ref|NP_619318.1| - 1.1e-27 96.3 0.1 3.2e-27 94.7 0.0 1.8 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|20093243|ref|NP_619318.1| - 2.1e-08 34.0 0.1 8.9e-08 32.0 0.0 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|20093243|ref|NP_619318.1| - 4.2e-06 26.5 0.2 9.5e-06 25.3 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|20093243|ref|NP_619318.1| - 1.1e-05 25.7 0.1 0.029 14.7 0.0 3.7 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|20093243|ref|NP_619318.1| - 0.0015 18.8 0.2 0.0065 16.8 0.0 2.2 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|20093243|ref|NP_619318.1| - 0.0018 17.7 0.1 0.0039 16.6 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|20093243|ref|NP_619318.1| - 0.0018 18.1 0.1 0.0085 15.9 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|20093243|ref|NP_619318.1| - 0.0031 17.0 0.0 0.007 15.9 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_11 PF14833.1 gi|20093243|ref|NP_619318.1| - 0.01 15.9 0.1 0.033 14.2 0.1 1.9 1 1 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|20093243|ref|NP_619318.1| - 0.011 14.9 0.1 0.05 12.7 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|20093243|ref|NP_619318.1| - 0.036 14.5 0.0 0.12 12.8 0.0 2.0 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_3 PF01494.14 gi|20093243|ref|NP_619318.1| - 0.051 12.6 0.1 0.082 11.9 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.19 gi|20093243|ref|NP_619318.1| - 0.067 12.0 0.5 0.17 10.7 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|20093243|ref|NP_619318.1| - 0.076 13.0 0.4 0.19 11.7 0.0 1.9 2 0 0 2 2 1 0 TrkA-N domain NAD_binding_8 PF13450.1 gi|20093243|ref|NP_619318.1| - 8.8 6.4 6.0 1.9 8.5 0.2 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DUF4407 PF14362.1 gi|20093244|ref|NP_619319.1| - 1.4 7.7 6.9 1.5 7.7 4.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FA_desaturase PF00487.19 gi|20093244|ref|NP_619319.1| - 5.8 6.2 10.7 6.1 6.2 7.4 1.0 1 0 0 1 1 1 0 Fatty acid desaturase NTP_transferase PF00483.18 gi|20093245|ref|NP_619320.1| - 1.2e-29 103.3 0.0 1.5e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|20093245|ref|NP_619320.1| - 4.3e-09 36.6 0.0 1.1e-08 35.3 0.0 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|20093245|ref|NP_619320.1| - 0.00043 19.9 0.0 0.0007 19.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|20093245|ref|NP_619320.1| - 0.01 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Smr PF01713.16 gi|20093245|ref|NP_619320.1| - 0.011 15.9 0.0 0.074 13.2 0.0 2.2 2 0 0 2 2 2 0 Smr domain CTP_transf_3 PF02348.14 gi|20093245|ref|NP_619320.1| - 0.045 13.3 0.1 0.1 12.2 0.0 1.5 1 1 0 1 1 1 0 Cytidylyltransferase Epimerase PF01370.16 gi|20093246|ref|NP_619321.1| - 9.2e-49 166.0 0.0 1.1e-48 165.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|20093246|ref|NP_619321.1| - 8.3e-21 73.9 0.0 1.1e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|20093246|ref|NP_619321.1| - 7.3e-20 71.0 0.0 8.2e-20 70.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|20093246|ref|NP_619321.1| - 2e-19 69.6 0.0 2.7e-18 65.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|20093246|ref|NP_619321.1| - 6.4e-17 61.2 0.1 5.4e-15 54.9 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|20093246|ref|NP_619321.1| - 7.9e-13 48.8 0.0 1.1e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|20093246|ref|NP_619321.1| - 1.8e-07 31.2 0.0 5.9e-07 29.5 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|20093246|ref|NP_619321.1| - 4.9e-06 25.9 0.1 3.4e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|20093246|ref|NP_619321.1| - 0.003 17.2 0.0 0.0057 16.3 0.0 1.4 1 0 0 1 1 1 1 KR domain TrkA_N PF02254.13 gi|20093246|ref|NP_619321.1| - 0.0062 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|20093246|ref|NP_619321.1| - 0.048 12.6 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|20093246|ref|NP_619321.1| - 0.054 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Polysacc_synt PF01943.12 gi|20093247|ref|NP_619322.1| - 9.3e-25 87.4 31.5 9.3e-25 87.4 21.9 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|20093247|ref|NP_619322.1| - 1.9e-22 79.9 27.0 1.9e-22 79.9 18.7 3.0 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|20093247|ref|NP_619322.1| - 2.1e-18 66.5 21.0 2.1e-18 66.5 14.6 3.8 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|20093247|ref|NP_619322.1| - 2.8e-09 35.9 42.0 3.9e-09 35.4 28.8 1.4 1 1 0 1 1 1 1 MviN-like protein Epiglycanin_C PF14654.1 gi|20093247|ref|NP_619322.1| - 0.18 11.8 5.5 0.29 11.1 0.3 3.3 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region DUF772 PF05598.6 gi|20093248|ref|NP_619323.1| - 1.3e-15 57.0 0.0 2.2e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) rve PF00665.21 gi|20093249|ref|NP_619324.1| - 7.4e-14 51.8 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20093249|ref|NP_619324.1| - 4e-06 26.2 0.1 0.0001 21.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20093249|ref|NP_619324.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20093249|ref|NP_619324.1| - 8.1e-05 22.1 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20093249|ref|NP_619324.1| - 0.025 14.5 0.2 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20093249|ref|NP_619324.1| - 0.073 12.5 0.1 0.25 10.8 0.0 1.9 1 0 0 1 1 1 0 Lsm C-terminal Epimerase PF01370.16 gi|20093250|ref|NP_619325.1| - 2.4e-68 230.1 0.0 2.9e-68 229.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|20093250|ref|NP_619325.1| - 3e-30 104.9 0.0 4.3e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|20093250|ref|NP_619325.1| - 2.4e-26 92.3 0.0 2.8e-25 88.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|20093250|ref|NP_619325.1| - 7.5e-20 70.9 0.0 9e-20 70.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|20093250|ref|NP_619325.1| - 3.8e-17 62.8 0.0 5.9e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|20093250|ref|NP_619325.1| - 2e-13 49.8 0.0 8.8e-11 41.2 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|20093250|ref|NP_619325.1| - 2.5e-10 40.5 0.0 5.6e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|20093250|ref|NP_619325.1| - 9.7e-10 38.0 0.0 1.9e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|20093250|ref|NP_619325.1| - 0.00036 20.2 0.4 0.0024 17.5 0.3 2.2 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|20093250|ref|NP_619325.1| - 0.001 18.7 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|20093250|ref|NP_619325.1| - 0.0026 18.1 0.1 0.081 13.3 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|20093250|ref|NP_619325.1| - 0.0065 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|20093250|ref|NP_619325.1| - 0.036 13.8 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1616 PF07760.6 gi|20093251|ref|NP_619326.1| - 4.3e-106 354.2 2.8 5.5e-106 353.8 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|20093251|ref|NP_619326.1| - 5.7 6.3 7.3 15 4.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Abi PF02517.11 gi|20093252|ref|NP_619327.1| - 7.6e-19 67.6 7.7 7.6e-19 67.6 5.3 2.4 2 1 0 2 2 2 1 CAAX protease self-immunity DUF1212 PF06738.7 gi|20093252|ref|NP_619327.1| - 0.036 13.5 9.1 0.96 8.8 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Y_Y_Y PF07495.8 gi|20093253|ref|NP_619328.1| - 0.05 13.3 0.3 0.1 12.3 0.0 1.8 2 1 0 2 2 2 0 Y_Y_Y domain DUF1624 PF07786.7 gi|20093255|ref|NP_619330.1| - 3.1e-77 258.8 7.2 3.6e-77 258.6 5.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Erv26 PF04148.8 gi|20093255|ref|NP_619330.1| - 0.1 11.9 2.0 0.15 11.3 1.4 1.4 1 0 0 1 1 1 0 Transmembrane adaptor Erv26 DUF4199 PF13858.1 gi|20093256|ref|NP_619331.1| - 0.066 13.1 0.9 0.099 12.5 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Ribosomal_S17e PF00833.13 gi|20093257|ref|NP_619332.1| - 8.1e-16 57.8 2.0 9.2e-16 57.7 1.4 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.17 gi|20093258|ref|NP_619333.1| - 4.9e-101 337.1 0.0 5.5e-101 336.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|20093258|ref|NP_619333.1| - 0.022 13.8 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PA PF02225.17 gi|20093258|ref|NP_619333.1| - 0.1 12.3 0.1 0.32 10.7 0.0 2.0 1 1 0 1 1 1 0 PA domain DapB_C PF05173.9 gi|20093259|ref|NP_619334.1| - 6e-50 168.4 0.1 8.2e-50 167.9 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|20093259|ref|NP_619334.1| - 9e-33 112.8 1.3 1.4e-32 112.2 0.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|20093259|ref|NP_619334.1| - 0.025 14.8 0.3 0.066 13.5 0.1 1.7 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|20093259|ref|NP_619334.1| - 0.033 12.9 0.4 0.043 12.5 0.3 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GFO_IDH_MocA PF01408.17 gi|20093259|ref|NP_619334.1| - 0.067 13.7 0.1 0.28 11.7 0.0 2.0 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold LPAM_2 PF13627.1 gi|20093259|ref|NP_619334.1| - 0.22 11.2 0.2 0.22 11.2 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic lipoprotein-attachment site OppC_N PF12911.2 gi|20093260|ref|NP_619335.1| - 0.072 12.4 0.5 0.11 11.8 0.3 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Spo7_2_N PF15407.1 gi|20093261|ref|NP_619336.1| - 0.055 12.9 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 Sporulation protein family 7 NosD PF05048.8 gi|20093263|ref|NP_619338.1| - 2.9e-19 69.1 10.6 2.5e-18 66.1 7.4 2.1 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20093263|ref|NP_619338.1| - 1.8e-15 57.0 14.6 1.7e-14 53.9 4.4 3.0 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|20093263|ref|NP_619338.1| - 1e-09 37.9 0.7 1.2e-05 24.5 0.5 3.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|20093263|ref|NP_619338.1| - 6.6e-05 23.1 3.2 0.00036 20.7 2.2 2.1 1 1 0 1 1 1 1 Pectate lyase superfamily protein Pectinesterase PF01095.14 gi|20093263|ref|NP_619338.1| - 0.021 13.3 0.0 0.08 11.5 0.0 1.7 2 0 0 2 2 2 0 Pectinesterase HTH_20 PF12840.2 gi|20093264|ref|NP_619339.1| - 8.6e-13 47.8 0.8 1.2e-12 47.4 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20093264|ref|NP_619339.1| - 2.9e-08 32.9 0.7 4.1e-08 32.4 0.5 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|20093264|ref|NP_619339.1| - 3.4e-05 23.4 0.1 5.7e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|20093264|ref|NP_619339.1| - 8.3e-05 22.1 1.4 0.00012 21.6 1.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|20093264|ref|NP_619339.1| - 0.00067 19.1 0.3 0.00078 18.9 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|20093264|ref|NP_619339.1| - 0.0015 18.2 0.1 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|20093264|ref|NP_619339.1| - 0.0046 16.7 0.1 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Sulfolobus_pRN PF05584.6 gi|20093264|ref|NP_619339.1| - 0.0072 16.2 0.3 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_30 PF13556.1 gi|20093264|ref|NP_619339.1| - 0.012 15.1 0.8 0.018 14.6 0.2 1.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DUF742 PF05331.6 gi|20093264|ref|NP_619339.1| - 0.07 12.7 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) SOG2 PF10428.4 gi|20093264|ref|NP_619339.1| - 0.082 11.5 0.2 0.087 11.4 0.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein HTH_IclR PF09339.5 gi|20093264|ref|NP_619339.1| - 0.095 12.3 0.6 0.18 11.4 0.4 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain 2C_adapt PF08793.5 gi|20093264|ref|NP_619339.1| - 0.13 12.1 0.1 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 2-cysteine adaptor domain HTH_20 PF12840.2 gi|20093265|ref|NP_619340.1| - 6.3e-08 32.3 0.0 1.2e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|20093265|ref|NP_619340.1| - 0.0026 17.4 0.0 0.0054 16.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|20093265|ref|NP_619340.1| - 0.024 14.6 0.0 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain SdpI PF13630.1 gi|20093265|ref|NP_619340.1| - 2 8.1 12.8 0.47 10.1 0.1 2.9 3 0 0 3 3 3 0 SdpI/YhfL protein family NosD PF05048.8 gi|20093266|ref|NP_619341.1| - 3.2e-36 124.6 34.6 4.1e-20 71.9 12.0 2.8 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|20093266|ref|NP_619341.1| - 3.4e-26 91.8 24.5 7e-20 71.3 6.6 3.0 2 1 1 3 3 3 2 Right handed beta helix region Pentapeptide_4 PF13599.1 gi|20093266|ref|NP_619341.1| - 0.00015 21.5 0.0 0.00048 19.8 0.0 1.9 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) KcnmB2_inactiv PF09303.5 gi|20093266|ref|NP_619341.1| - 0.0025 17.5 13.8 0.054 13.2 0.1 5.1 5 0 0 5 5 5 1 KCNMB2, ball and chain domain Pectate_lyase_3 PF12708.2 gi|20093266|ref|NP_619341.1| - 0.027 14.5 8.2 7.6 6.5 0.0 3.3 2 1 1 3 3 3 0 Pectate lyase superfamily protein DUF4361 PF14274.1 gi|20093266|ref|NP_619341.1| - 0.048 13.3 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4361) rve PF00665.21 gi|20093268|ref|NP_619343.1| - 9.1e-14 51.5 0.0 2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|20093268|ref|NP_619343.1| - 5.1e-06 25.9 0.1 0.00012 21.5 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|20093268|ref|NP_619343.1| - 8.4e-05 22.6 0.0 0.00019 21.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|20093268|ref|NP_619343.1| - 9.3e-05 21.9 0.2 0.00023 20.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|20093268|ref|NP_619343.1| - 0.029 14.3 0.2 0.062 13.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Lsm_C PF14894.1 gi|20093268|ref|NP_619343.1| - 0.085 12.3 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal HTH_20 PF12840.2 gi|20093269|ref|NP_619344.1| - 1.5e-09 37.5 0.0 2e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|20093269|ref|NP_619344.1| - 1.2e-06 27.7 0.7 2.2e-06 26.9 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|20093269|ref|NP_619344.1| - 2.2e-06 27.2 0.4 4.4e-06 26.2 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|20093269|ref|NP_619344.1| - 4.4e-05 23.0 0.1 6e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|20093269|ref|NP_619344.1| - 0.0021 17.7 0.2 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 MarR family DUF742 PF05331.6 gi|20093269|ref|NP_619344.1| - 0.0025 17.4 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) MarR_2 PF12802.2 gi|20093269|ref|NP_619344.1| - 0.0033 17.0 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|20093269|ref|NP_619344.1| - 0.0038 16.8 0.2 0.0077 15.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|20093269|ref|NP_619344.1| - 0.062 13.3 0.2 0.088 12.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|20093269|ref|NP_619344.1| - 0.062 12.9 0.2 0.11 12.1 0.1 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|20093269|ref|NP_619344.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|20093269|ref|NP_619344.1| - 0.066 12.7 0.3 0.089 12.3 0.2 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF3908 PF13048.1 gi|20093269|ref|NP_619344.1| - 0.11 12.4 0.1 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3908) HTH_Crp_2 PF13545.1 gi|20093270|ref|NP_619345.1| - 0.005 16.6 0.1 0.017 14.9 0.0 2.0 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|20093270|ref|NP_619345.1| - 0.006 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease RE_LlaMI PF09562.5 gi|20093270|ref|NP_619345.1| - 0.0082 15.3 0.0 0.0095 15.1 0.0 1.1 1 0 0 1 1 1 1 LlaMI restriction endonuclease HTH_23 PF13384.1 gi|20093270|ref|NP_619345.1| - 0.0083 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DUF2481 PF10654.4 gi|20093270|ref|NP_619345.1| - 0.02 14.5 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_24 PF13412.1 gi|20093270|ref|NP_619345.1| - 0.062 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|20093270|ref|NP_619345.1| - 0.066 12.8 0.0 0.16 11.6 0.0 1.8 1 1 0 1 1 1 0 HTH domain MarR_2 PF12802.2 gi|20093270|ref|NP_619345.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 MarR family LacI PF00356.16 gi|20093270|ref|NP_619345.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family DUF1673 PF07895.6 gi|20093271|ref|NP_619346.1| - 1.8e-65 220.3 2.5 2.1e-65 220.1 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) ATP_synt_I PF03899.10 gi|20093271|ref|NP_619346.1| - 0.037 14.1 2.1 0.045 13.8 0.6 1.7 1 1 1 2 2 2 0 ATP synthase I chain MFS_1 PF07690.11 gi|20093271|ref|NP_619346.1| - 0.1 11.2 3.5 0.25 10.0 2.5 1.7 1 1 0 1 1 1 0 Major Facilitator Superfamily DUF1673 PF07895.6 gi|20093272|ref|NP_619347.1| - 1.6e-77 259.6 4.1 1.9e-77 259.4 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) ATP_synt_I PF03899.10 gi|20093272|ref|NP_619347.1| - 0.0045 17.1 3.2 0.0045 17.1 2.2 2.4 1 1 1 2 2 2 1 ATP synthase I chain CitMHS PF03600.11 gi|20093272|ref|NP_619347.1| - 0.024 13.2 1.7 0.039 12.5 1.2 1.2 1 0 0 1 1 1 0 Citrate transporter DUF4131 PF13567.1 gi|20093272|ref|NP_619347.1| - 0.35 10.2 8.6 0.34 10.2 4.1 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2418 PF10332.4 gi|20093272|ref|NP_619347.1| - 0.81 10.0 6.6 0.48 10.7 0.2 3.0 1 1 3 4 4 4 0 Protein of unknown function (DUF2418) DUF1673 PF07895.6 gi|20093273|ref|NP_619348.1| - 1.1e-63 214.4 0.6 1.3e-63 214.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF443 PF04276.7 gi|20093273|ref|NP_619348.1| - 0.026 13.9 4.6 0.042 13.2 2.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF443) DUF4131 PF13567.1 gi|20093273|ref|NP_619348.1| - 0.17 11.3 3.6 0.58 9.5 2.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) PrgI PF12666.2 gi|20093273|ref|NP_619348.1| - 4 7.6 8.4 0.77 9.9 0.2 2.2 1 1 1 2 2 2 0 PrgI family protein DUF1673 PF07895.6 gi|20093274|ref|NP_619349.1| - 2.6e-58 196.9 0.1 2.8e-58 196.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) PRA1 PF03208.14 gi|20093274|ref|NP_619349.1| - 0.26 10.5 0.0 0.26 10.5 0.0 2.0 2 0 0 2 2 2 0 PRA1 family protein DsbB PF02600.11 gi|20093274|ref|NP_619349.1| - 2.4 7.9 5.9 3.4 7.4 0.1 2.1 2 0 0 2 2 2 0 Disulfide bond formation protein DsbB DUF4199 PF13858.1 gi|20093274|ref|NP_619349.1| - 4.2 7.2 12.6 3.6 7.4 3.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) CcoS PF03597.10 gi|20093274|ref|NP_619349.1| - 7.9 6.0 8.3 26 4.3 0.2 2.9 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type DUF1673 PF07895.6 gi|20093275|ref|NP_619350.1| - 2e-69 233.2 1.5 2.3e-69 233.0 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) UPF0242 PF06785.6 gi|20093275|ref|NP_619350.1| - 1.8 7.1 4.3 2.6 6.6 3.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) DUF4131 PF13567.1 gi|20093275|ref|NP_619350.1| - 4.6 6.6 7.3 5.2 6.4 2.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF1673 PF07895.6 gi|20093276|ref|NP_619351.1| - 3.5e-61 206.3 6.3 3.9e-61 206.1 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF3661 PF12400.3 gi|20093276|ref|NP_619351.1| - 0.0081 16.2 4.0 0.013 15.6 2.8 1.5 1 1 0 1 1 1 1 Vaculolar membrane protein DUF4097 PF13349.1 gi|20093276|ref|NP_619351.1| - 0.52 9.8 5.3 4.6 6.7 1.4 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4097) DUF2207 PF09972.4 gi|20093276|ref|NP_619351.1| - 0.53 8.7 6.2 0.68 8.4 4.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1673 PF07895.6 gi|20093277|ref|NP_619352.1| - 1.7e-71 240.0 7.1 1.9e-71 239.8 4.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) NMN_transporter PF04973.7 gi|20093277|ref|NP_619352.1| - 0.00091 18.7 5.4 0.0012 18.3 3.8 1.2 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter MFS_1 PF07690.11 gi|20093277|ref|NP_619352.1| - 0.0012 17.6 0.3 0.0015 17.3 0.2 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily H_PPase PF03030.11 gi|20093277|ref|NP_619352.1| - 0.044 12.0 0.8 0.051 11.8 0.6 1.1 1 0 0 1 1 1 0 Inorganic H+ pyrophosphatase DUF4229 PF14012.1 gi|20093277|ref|NP_619352.1| - 0.47 10.3 6.5 15 5.6 2.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) DUF1673 PF07895.6 gi|20093278|ref|NP_619353.1| - 1.3e-73 246.9 4.9 1.4e-73 246.7 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) UPF0104 PF03706.8 gi|20093278|ref|NP_619353.1| - 0.0026 17.0 0.4 0.23 10.6 0.1 2.0 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0104) CitMHS PF03600.11 gi|20093278|ref|NP_619353.1| - 0.028 13.0 0.1 0.088 11.3 0.0 1.7 2 0 0 2 2 2 0 Citrate transporter RDD PF06271.7 gi|20093278|ref|NP_619353.1| - 1.7 8.5 11.2 0.35 10.7 0.8 2.2 2 0 0 2 2 2 0 RDD family DUF4199 PF13858.1 gi|20093278|ref|NP_619353.1| - 9.1 6.1 16.7 0.62 9.9 3.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF1673 PF07895.6 gi|20093279|ref|NP_619354.1| - 2.5e-72 242.7 6.0 2.8e-72 242.5 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF4131 PF13567.1 gi|20093279|ref|NP_619354.1| - 0.64 9.4 7.2 3.8 6.8 5.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) RseC_MucC PF04246.7 gi|20093279|ref|NP_619354.1| - 2.3 7.7 5.0 3.5 7.1 0.3 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF1746 PF08508.5 gi|20093280|ref|NP_619355.1| - 0.077 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1746) DUF1673 PF07895.6 gi|20093281|ref|NP_619356.1| - 2.6e-12 46.7 1.2 2.9e-12 46.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF3159 PF11361.3 gi|20093281|ref|NP_619356.1| - 0.067 12.6 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) DUF1673 PF07895.6 gi|20093282|ref|NP_619357.1| - 8e-48 162.6 7.1 9e-48 162.5 4.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) TauE PF01925.14 gi|20093282|ref|NP_619357.1| - 0.22 10.9 2.9 0.073 12.5 0.4 1.5 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE ATP_synt_I PF03899.10 gi|20093282|ref|NP_619357.1| - 3.3 7.9 8.6 0.091 12.9 0.6 2.1 3 0 0 3 3 3 0 ATP synthase I chain DUF4239 PF14023.1 gi|20093282|ref|NP_619357.1| - 6 6.1 12.0 0.95 8.7 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4239) DUF1673 PF07895.6 gi|20093283|ref|NP_619358.1| - 2.5e-48 164.3 7.7 2.8e-48 164.1 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF4239 PF14023.1 gi|20093283|ref|NP_619358.1| - 0.6 9.4 5.9 3.8 6.8 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) DUF4181 PF13789.1 gi|20093283|ref|NP_619358.1| - 0.93 9.4 12.8 1.2 9.0 2.4 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4181) DUF1673 PF07895.6 gi|20093284|ref|NP_619359.1| - 7.2e-16 58.3 4.7 7.7e-16 58.2 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) SPT2 PF08243.6 gi|20093285|ref|NP_619360.1| - 0.091 13.0 1.5 0.13 12.5 1.0 1.3 1 0 0 1 1 1 0 SPT2 chromatin protein DUF1374 PF07118.6 gi|20093285|ref|NP_619360.1| - 0.14 12.2 1.2 0.73 9.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1374) TPR_MLP1_2 PF07926.7 gi|20093285|ref|NP_619360.1| - 1.4 8.6 6.7 5.7 6.6 4.1 2.2 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein PyrI PF01948.13 gi|20093286|ref|NP_619361.1| - 7.5e-34 115.6 2.1 1e-33 115.1 1.5 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|20093286|ref|NP_619361.1| - 8.3e-18 63.5 3.3 8.3e-18 63.5 2.3 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|20093287|ref|NP_619362.1| - 5.7e-48 162.1 0.0 3.1e-47 159.8 0.0 1.9 2 1 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|20093287|ref|NP_619362.1| - 5.8e-38 130.2 0.0 8.2e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MTBP_N PF14918.1 gi|20093288|ref|NP_619363.1| - 0.022 14.1 0.3 0.029 13.7 0.2 1.3 1 0 0 1 1 1 0 MDM2-binding Drf_FH3 PF06367.11 gi|20093288|ref|NP_619363.1| - 0.068 12.5 1.7 5.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Diaphanous FH3 Domain YflT PF11181.3 gi|20093288|ref|NP_619363.1| - 0.078 13.1 0.2 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 Heat induced stress protein YflT TBPIP_N PF15517.1 gi|20093288|ref|NP_619363.1| - 0.11 12.1 0.2 0.19 11.3 0.2 1.4 1 0 0 1 1 1 0 TBP-interacting protein N-terminus DUF4065 PF13274.1 gi|20093288|ref|NP_619363.1| - 0.67 10.6 3.4 1.5 9.5 2.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) Methyltransf_6 PF03737.10 gi|20093289|ref|NP_619364.1| - 2.7e-33 114.9 3.4 2.7e-33 114.9 2.3 2.2 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|20093289|ref|NP_619364.1| - 3.6e-19 69.0 7.7 3.6e-19 69.0 5.3 2.2 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.14 gi|20093289|ref|NP_619364.1| - 7.3e-06 25.8 1.8 0.00014 21.5 0.0 2.5 1 1 1 2 2 2 2 HMGL-like NanE PF04131.9 gi|20093289|ref|NP_619364.1| - 1e-05 24.5 2.2 1e-05 24.5 1.5 1.9 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|20093289|ref|NP_619364.1| - 5.5e-05 22.5 8.2 0.0022 17.2 1.4 3.4 2 1 0 3 3 3 1 PcrB family Peripla_BP_4 PF13407.1 gi|20093289|ref|NP_619364.1| - 0.00036 19.9 2.1 0.00078 18.8 1.5 1.6 1 0 0 1 1 1 1 Periplasmic binding protein domain IGPS PF00218.16 gi|20093289|ref|NP_619364.1| - 0.00039 19.5 0.9 0.00069 18.7 0.6 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.14 gi|20093289|ref|NP_619364.1| - 0.11 11.5 1.5 0.7 8.9 0.2 2.4 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DUF561 PF04481.7 gi|20093289|ref|NP_619364.1| - 0.21 10.5 2.4 1.3 7.8 0.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF561) Pterin_bind PF00809.17 gi|20093289|ref|NP_619364.1| - 1.1 8.5 7.2 3.1 7.0 1.4 3.1 2 1 1 3 3 3 0 Pterin binding enzyme Arc_PepC_II PF06847.6 gi|20093290|ref|NP_619365.1| - 2.7e-26 91.8 0.0 4.7e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|20093290|ref|NP_619365.1| - 7.8e-14 51.7 9.3 7.8e-14 51.7 6.5 2.0 2 0 0 2 2 2 1 Type IV leader peptidase family AA_permease PF00324.16 gi|20093291|ref|NP_619366.1| - 1.5e-49 168.6 42.6 2.2e-49 168.1 29.5 1.1 1 0 0 1 1 1 1 Amino acid permease RQC PF09382.5 gi|20093292|ref|NP_619367.1| - 6.9e-29 99.6 0.2 2.8e-28 97.7 0.0 2.2 2 0 0 2 2 2 1 RQC domain HRDC PF00570.18 gi|20093292|ref|NP_619367.1| - 1.3e-22 79.2 0.0 3.6e-22 77.8 0.0 1.8 1 0 0 1 1 1 1 HRDC domain DEAD PF00270.24 gi|20093292|ref|NP_619367.1| - 1.4e-20 73.4 0.0 9.1e-19 67.5 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|20093292|ref|NP_619367.1| - 6.7e-19 67.5 0.0 7.6e-18 64.1 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HTH_40 PF14493.1 gi|20093292|ref|NP_619367.1| - 1.3e-09 38.0 0.5 5e-09 36.2 0.3 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain Helicase_Sgs1 PF11408.3 gi|20093292|ref|NP_619367.1| - 8.9e-07 28.6 0.0 2.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.10 gi|20093292|ref|NP_619367.1| - 0.0027 17.5 0.0 0.019 14.8 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit MutS_IV PF05190.13 gi|20093292|ref|NP_619367.1| - 0.027 14.6 0.3 0.16 12.1 0.1 2.3 2 0 0 2 2 2 0 MutS family domain IV Phlebovirus_NSM PF07246.6 gi|20093292|ref|NP_619367.1| - 0.052 12.6 0.1 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DUF2951 PF11166.3 gi|20093295|ref|NP_619370.1| - 0.36 10.6 3.7 0.17 11.7 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) GMP_synt_C PF00958.17 gi|20093296|ref|NP_619371.1| - 8.3e-30 102.3 0.0 1.9e-29 101.2 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|20093296|ref|NP_619371.1| - 3.8e-10 39.0 0.1 4.4e-09 35.5 0.0 2.1 1 1 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|20093296|ref|NP_619371.1| - 0.00021 20.6 0.0 0.00045 19.5 0.0 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|20093296|ref|NP_619371.1| - 0.00081 18.9 0.1 0.0015 18.0 0.0 1.5 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|20093296|ref|NP_619371.1| - 0.00094 17.8 0.0 0.032 12.8 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|20093296|ref|NP_619371.1| - 0.0051 16.6 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|20093296|ref|NP_619371.1| - 0.016 14.7 0.0 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) DUF2674 PF10879.3 gi|20093296|ref|NP_619371.1| - 0.038 13.7 0.4 2.1 8.1 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2674) Acetyltransf_7 PF13508.1 gi|20093297|ref|NP_619372.1| - 1.3e-13 50.8 0.0 1.1e-12 47.9 0.0 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20093297|ref|NP_619372.1| - 6.6e-11 41.8 0.0 1.6e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|20093297|ref|NP_619372.1| - 1.2e-07 31.8 0.1 2.4e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|20093297|ref|NP_619372.1| - 3.2e-07 30.2 0.1 5.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|20093297|ref|NP_619372.1| - 5.4e-05 23.0 0.1 0.00048 19.9 0.0 2.2 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20093297|ref|NP_619372.1| - 0.00015 21.6 0.0 0.00035 20.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20093297|ref|NP_619372.1| - 0.00018 21.6 0.1 0.00035 20.7 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20093297|ref|NP_619372.1| - 0.05 13.4 0.0 0.17 11.7 0.0 1.9 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PSD3 PF07626.6 gi|20093297|ref|NP_619372.1| - 0.11 12.4 0.0 0.86 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1587) Radical_SAM PF04055.16 gi|20093298|ref|NP_619373.1| - 1.1e-07 32.2 0.0 2.9e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|20093299|ref|NP_619374.1| - 1.8e-18 66.3 0.0 2.5e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|20093299|ref|NP_619374.1| - 1.8e-16 60.4 0.0 2.1e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20093299|ref|NP_619374.1| - 2.8e-14 53.4 0.0 3.3e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|20093299|ref|NP_619374.1| - 1.5e-11 44.3 0.0 1.9e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20093299|ref|NP_619374.1| - 7.8e-10 38.8 0.0 9.2e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20093299|ref|NP_619374.1| - 8.5e-10 38.6 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20093299|ref|NP_619374.1| - 1.3e-05 25.0 0.0 3.5e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20093299|ref|NP_619374.1| - 0.0001 21.9 0.1 0.00071 19.2 0.1 2.3 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|20093299|ref|NP_619374.1| - 0.0043 16.9 0.0 0.0065 16.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Tox-SGS PF15651.1 gi|20093299|ref|NP_619374.1| - 0.074 12.8 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Salivary glad secreted protein domain toxin AA_kinase PF00696.23 gi|20093300|ref|NP_619375.1| - 7.7e-41 140.2 5.4 8.8e-41 140.0 3.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family XPG_N PF00752.12 gi|20093300|ref|NP_619375.1| - 0.05 13.8 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 XPG N-terminal domain MC1 PF05854.6 gi|20093301|ref|NP_619376.1| - 4.5e-47 157.9 2.0 4.9e-47 157.8 1.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.9 gi|20093302|ref|NP_619377.1| - 1.5e-93 313.0 2.0 1.7e-93 312.8 1.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|20093302|ref|NP_619377.1| - 0.0062 16.6 0.1 0.56 10.3 0.0 2.9 3 1 0 3 3 3 1 Dihydroneopterin aldolase DUF2098 PF09871.4 gi|20093303|ref|NP_619378.1| - 3.7e-30 103.7 1.1 4.5e-30 103.4 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) DUF2114 PF09887.4 gi|20093304|ref|NP_619379.1| - 3.1e-226 750.9 4.2 3.6e-226 750.6 2.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) FrhB_FdhB_C PF04432.8 gi|20093305|ref|NP_619380.1| - 1.4e-44 151.3 1.1 2e-44 150.8 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|20093305|ref|NP_619380.1| - 3.3e-26 90.9 0.0 7.7e-26 89.7 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term YHS PF04945.8 gi|20093305|ref|NP_619380.1| - 2.2e-11 43.3 0.7 5.2e-11 42.2 0.5 1.6 1 0 0 1 1 1 1 YHS domain Fer4_7 PF12838.2 gi|20093305|ref|NP_619380.1| - 0.00017 21.9 6.3 0.04 14.3 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|20093305|ref|NP_619380.1| - 0.0012 19.0 9.9 0.069 13.4 0.9 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain zf-FCS PF06467.9 gi|20093305|ref|NP_619380.1| - 0.0014 18.2 1.8 0.0014 18.2 1.2 3.1 4 0 0 4 4 3 1 MYM-type Zinc finger with FCS sequence motif Fer4_10 PF13237.1 gi|20093305|ref|NP_619380.1| - 0.0015 18.3 10.8 0.0015 18.3 7.5 2.2 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|20093305|ref|NP_619380.1| - 0.0064 16.4 12.9 0.25 11.3 1.6 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20093305|ref|NP_619380.1| - 0.033 13.7 17.6 0.067 12.8 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|20093305|ref|NP_619380.1| - 0.035 13.9 10.0 0.14 12.1 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|20093305|ref|NP_619380.1| - 0.058 13.7 17.1 0.22 11.9 0.8 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|20093305|ref|NP_619380.1| - 0.081 13.2 16.6 0.16 12.3 1.7 3.0 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20093305|ref|NP_619380.1| - 0.38 11.5 12.4 1.6 9.5 0.5 3.1 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|20093305|ref|NP_619380.1| - 0.54 10.8 8.1 3.7 8.1 0.1 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|20093305|ref|NP_619380.1| - 3.3 7.6 13.0 1.7 8.5 7.0 2.1 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20093305|ref|NP_619380.1| - 7.2 6.7 20.0 0.16 11.9 1.9 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain OsmC PF02566.14 gi|20093306|ref|NP_619381.1| - 1.2e-17 63.9 0.0 2.3e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 OsmC-like protein Phytochelatin PF05023.9 gi|20093306|ref|NP_619381.1| - 0.018 14.0 0.0 0.11 11.4 0.0 1.9 2 0 0 2 2 2 0 Phytochelatin synthase Glu-tRNAGln PF02686.10 gi|20093307|ref|NP_619382.1| - 1.3e-22 79.3 0.6 1.6e-22 79.0 0.4 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Sec34 PF04136.10 gi|20093307|ref|NP_619382.1| - 0.075 12.7 0.0 0.087 12.5 0.0 1.1 1 0 0 1 1 1 0 Sec34-like family Chorion_S16 PF05836.7 gi|20093307|ref|NP_619382.1| - 0.1 12.4 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Chorion protein S16 Amidase PF01425.16 gi|20093308|ref|NP_619383.1| - 3.1e-154 514.0 0.0 3.5e-154 513.8 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|20093309|ref|NP_619384.1| - 6.8e-113 376.3 0.0 9.2e-113 375.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|20093309|ref|NP_619384.1| - 2.5e-48 163.5 0.1 4.1e-48 162.8 0.1 1.3 1 0 0 1 1 1 1 GatB domain CN_hydrolase PF00795.17 gi|20093310|ref|NP_619385.1| - 5.5e-24 84.5 0.0 6.9e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_31 PF13847.1 gi|20093312|ref|NP_619387.1| - 2e-22 79.4 0.0 2.4e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|20093312|ref|NP_619387.1| - 4.6e-16 59.0 0.0 6.4e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093312|ref|NP_619387.1| - 8.7e-13 48.3 0.0 1.1e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093312|ref|NP_619387.1| - 4e-10 39.9 0.0 5.6e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093312|ref|NP_619387.1| - 4.6e-10 39.8 0.0 6.4e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093312|ref|NP_619387.1| - 1.6e-09 38.2 0.0 2.2e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093312|ref|NP_619387.1| - 1.7e-09 37.1 0.0 2.1e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|20093312|ref|NP_619387.1| - 8.8e-09 35.4 0.0 1.3e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093312|ref|NP_619387.1| - 3.2e-07 29.8 0.0 5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|20093312|ref|NP_619387.1| - 2.1e-06 26.8 0.0 2.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin PrmA PF06325.8 gi|20093312|ref|NP_619387.1| - 1.1e-05 24.7 0.0 1.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|20093312|ref|NP_619387.1| - 2.9e-05 23.5 0.0 3.9e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|20093312|ref|NP_619387.1| - 8e-05 22.7 0.0 0.00016 21.6 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|20093312|ref|NP_619387.1| - 9.6e-05 22.0 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|20093312|ref|NP_619387.1| - 0.00084 18.4 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|20093312|ref|NP_619387.1| - 0.0038 16.7 0.0 0.015 14.8 0.0 1.8 1 1 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit TehB PF03848.9 gi|20093312|ref|NP_619387.1| - 0.0082 15.3 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Met_10 PF02475.11 gi|20093312|ref|NP_619387.1| - 0.067 12.7 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_24 PF13578.1 gi|20093312|ref|NP_619387.1| - 0.12 13.2 0.0 0.16 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain IstB_IS21 PF01695.12 gi|20093314|ref|NP_619389.1| - 1.9e-69 232.6 0.0 3e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|20093314|ref|NP_619389.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|20093314|ref|NP_619389.1| - 3.9e-05 23.3 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|20093314|ref|NP_619389.1| - 0.00028 21.6 2.2 0.0012 19.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|20093314|ref|NP_619389.1| - 0.00035 19.8 0.0 0.00057 19.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.1 gi|20093314|ref|NP_619389.1| - 0.00035 20.5 0.1 0.0014 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|20093314|ref|NP_619389.1| - 0.00052 19.1 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|20093314|ref|NP_619389.1| - 0.00062 19.2 0.1 0.0018 17.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|20093314|ref|NP_619389.1| - 0.00065 19.6 0.9 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|20093314|ref|NP_619389.1| - 0.00068 19.7 0.4 0.13 12.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|20093314|ref|NP_619389.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|20093314|ref|NP_619389.1| - 0.0032 16.7 0.0 0.01 15.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|20093314|ref|NP_619389.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|20093314|ref|NP_619389.1| - 0.012 15.8 3.5 0.047 14.0 0.1 2.9 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|20093314|ref|NP_619389.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|20093314|ref|NP_619389.1| - 0.021 14.3 1.5 0.073 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|20093314|ref|NP_619389.1| - 0.031 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|20093314|ref|NP_619389.1| - 0.034 14.0 0.1 0.071 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|20093314|ref|NP_619389.1| - 0.037 13.8 0.0 4.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|20093314|ref|NP_619389.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|20093314|ref|NP_619389.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|20093314|ref|NP_619389.1| - 0.063 12.9 0.4 4.1 7.0 0.0 2.5 1 1 1 2 2 2 0 NTPase ArgK PF03308.11 gi|20093314|ref|NP_619389.1| - 0.065 12.0 0.0 0.15 10.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein YqgF PF14639.1 gi|20093314|ref|NP_619389.1| - 0.069 12.7 0.3 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_5 PF07728.9 gi|20093314|ref|NP_619389.1| - 0.083 12.6 0.2 0.43 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|20093314|ref|NP_619389.1| - 0.14 11.2 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|20093314|ref|NP_619389.1| - 0.15 12.3 0.4 0.51 10.6 0.0 2.1 3 1 0 3 3 1 0 ABC transporter Mlp PF03304.8 gi|20093314|ref|NP_619389.1| - 0.23 11.4 4.0 1.5 8.8 1.1 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.21 gi|20093315|ref|NP_619390.1| - 7.6e-20 71.2 0.0 1.4e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|20093315|ref|NP_619390.1| - 7.2e-07 28.6 0.1 1.7e-06 27.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|20093315|ref|NP_619390.1| - 1.2e-05 25.0 0.2 2.8e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|20093315|ref|NP_619390.1| - 3.4e-05 23.3 0.0 9e-05 21.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.1 gi|20093315|ref|NP_619390.1| - 3.8e-05 23.1 0.0 8.6e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain Sigma70_r4 PF04545.11 gi|20093315|ref|NP_619390.1| - 0.0019 17.4 0.2 0.026 13.8 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|20093315|ref|NP_619390.1| - 0.0068 16.5 0.0 0.2 11.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|20093315|ref|NP_619390.1| - 0.0085 15.6 0.1 0.047 13.2 0.0 2.1 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_Tc3_1 PF11427.3 gi|20093315|ref|NP_619390.1| - 0.0097 15.5 0.0 0.035 13.7 0.0 1.9 1 0 0 1 1 1 1 Tc3 transposase HTH_3 PF01381.17 gi|20093315|ref|NP_619390.1| - 0.015 15.1 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|20093315|ref|NP_619390.1| - 0.032 14.3 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|20093315|ref|NP_619390.1| - 0.033 14.1 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|20093315|ref|NP_619390.1| - 0.05 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4_2 PF08281.7 gi|20093315|ref|NP_619390.1| - 0.052 13.0 0.1 0.15 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|20093315|ref|NP_619390.1| - 0.073 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding rve_2 PF13333.1 gi|20093315|ref|NP_619390.1| - 0.099 12.7 0.0 0.3 11.1 0.0 1.9 1 0 0 1 1 1 0 Integrase core domain MerR_1 PF13411.1 gi|20093315|ref|NP_619390.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein S-layer PF07752.6 gi|20093316|ref|NP_619391.1| - 9.1e-52 175.8 8.6 9.1e-52 175.8 6.0 1.4 2 0 0 2 2 2 1 S-layer protein ABC_tran PF00005.22 gi|20093317|ref|NP_619392.1| - 1.5e-34 119.2 0.0 2e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20093317|ref|NP_619392.1| - 1.3e-13 51.5 0.1 1.3e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|20093317|ref|NP_619392.1| - 8.8e-07 29.4 0.1 1.2e-06 29.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|20093317|ref|NP_619392.1| - 2e-06 27.2 0.2 0.018 14.2 0.1 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|20093317|ref|NP_619392.1| - 2.4e-06 26.9 0.0 5e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|20093317|ref|NP_619392.1| - 1.9e-05 23.9 0.1 3.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|20093317|ref|NP_619392.1| - 2e-05 23.8 0.1 0.056 12.4 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|20093317|ref|NP_619392.1| - 0.001 19.0 2.2 0.0042 17.0 1.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|20093317|ref|NP_619392.1| - 0.0011 17.6 0.1 0.39 9.2 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|20093317|ref|NP_619392.1| - 0.0023 17.4 0.2 0.014 14.8 0.1 1.9 1 1 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|20093317|ref|NP_619392.1| - 0.0032 17.1 0.4 0.022 14.5 0.1 2.5 2 1 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|20093317|ref|NP_619392.1| - 0.0078 15.6 0.1 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20093317|ref|NP_619392.1| - 0.0083 16.2 0.2 0.04 14.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|20093317|ref|NP_619392.1| - 0.0096 15.5 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MutS_V PF00488.16 gi|20093317|ref|NP_619392.1| - 0.012 14.9 0.2 0.028 13.8 0.0 1.6 2 0 0 2 2 1 0 MutS domain V SRP54 PF00448.17 gi|20093317|ref|NP_619392.1| - 0.015 14.7 0.1 0.027 13.9 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|20093317|ref|NP_619392.1| - 0.017 14.2 0.1 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|20093317|ref|NP_619392.1| - 0.021 14.5 0.6 0.09 12.4 0.1 2.0 2 1 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|20093317|ref|NP_619392.1| - 0.021 14.4 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|20093317|ref|NP_619392.1| - 0.021 15.0 0.1 0.066 13.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|20093317|ref|NP_619392.1| - 0.037 13.9 0.0 0.28 11.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|20093317|ref|NP_619392.1| - 0.11 11.6 0.0 0.24 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|20093317|ref|NP_619392.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|20093317|ref|NP_619392.1| - 0.14 11.9 0.2 0.54 9.9 0.0 2.0 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|20093317|ref|NP_619392.1| - 0.14 11.8 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|20093317|ref|NP_619392.1| - 0.16 11.6 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase FecCD PF01032.13 gi|20093318|ref|NP_619393.1| - 7.7e-91 304.1 33.1 9.2e-91 303.8 22.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20093318|ref|NP_619393.1| - 1.6e-05 24.3 18.1 1.6e-05 24.3 12.5 1.7 1 1 0 1 1 1 1 ABC 3 transport family DUF543 PF04418.7 gi|20093318|ref|NP_619393.1| - 0.27 11.2 2.8 0.47 10.4 0.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF543) Radical_SAM PF04055.16 gi|20093319|ref|NP_619394.1| - 2.2e-07 31.2 0.0 7.8e-07 29.4 0.0 1.9 2 1 1 3 3 3 1 Radical SAM superfamily Peripla_BP_2 PF01497.13 gi|20093319|ref|NP_619394.1| - 2.7e-07 29.9 0.0 4.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.1 gi|20093319|ref|NP_619394.1| - 2.2e-05 24.6 0.2 4.9e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|20093319|ref|NP_619394.1| - 0.014 14.8 0.3 2.3 7.7 0.0 2.6 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|20093319|ref|NP_619394.1| - 0.023 14.3 0.2 0.31 10.7 0.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Fer4_14 PF13394.1 gi|20093319|ref|NP_619394.1| - 0.057 13.4 0.3 0.16 12.0 0.2 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain Auto_anti-p27 PF06677.7 gi|20093319|ref|NP_619394.1| - 0.072 12.8 0.1 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Methyltransf_11 PF08241.7 gi|20093320|ref|NP_619395.1| - 5.1e-19 68.5 0.0 8.7e-19 67.8 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093320|ref|NP_619395.1| - 4.1e-13 49.1 0.0 5.1e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093320|ref|NP_619395.1| - 5.1e-13 49.2 0.0 7.6e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093320|ref|NP_619395.1| - 6.2e-10 39.6 0.0 1e-09 38.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093320|ref|NP_619395.1| - 1.8e-09 37.9 0.0 2.7e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20093320|ref|NP_619395.1| - 2e-09 37.4 0.1 4.8e-09 36.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093320|ref|NP_619395.1| - 5.2e-09 35.5 0.0 6.8e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|20093320|ref|NP_619395.1| - 2.5e-07 30.5 0.0 3.1e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093320|ref|NP_619395.1| - 5.3e-05 22.6 0.0 8.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|20093320|ref|NP_619395.1| - 0.00033 19.8 0.0 0.00046 19.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|20093320|ref|NP_619395.1| - 0.00033 20.3 0.0 0.0054 16.3 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase N6_N4_Mtase PF01555.13 gi|20093320|ref|NP_619395.1| - 0.0032 16.9 0.0 0.89 9.0 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.13 gi|20093320|ref|NP_619395.1| - 0.0056 16.2 0.0 0.013 15.0 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.15 gi|20093320|ref|NP_619395.1| - 0.0069 15.4 0.0 0.0072 15.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|20093320|ref|NP_619395.1| - 0.017 14.1 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|20093320|ref|NP_619395.1| - 0.021 14.5 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|20093320|ref|NP_619395.1| - 0.13 11.5 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Met_10 PF02475.11 gi|20093320|ref|NP_619395.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Peripla_BP_2 PF01497.13 gi|20093321|ref|NP_619396.1| - 3.9e-25 88.3 0.0 8.4e-25 87.2 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein RibD_C PF01872.12 gi|20093324|ref|NP_619399.1| - 1e-20 74.1 0.0 2.1e-15 56.8 0.0 2.0 1 1 1 2 2 2 2 RibD C-terminal domain DHFR_1 PF00186.14 gi|20093324|ref|NP_619399.1| - 1.6e-07 31.0 0.0 2.5e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Dihydrofolate reductase Mrr_cat PF04471.7 gi|20093325|ref|NP_619400.1| - 7.3e-36 122.4 0.1 1.2e-35 121.7 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.1 gi|20093325|ref|NP_619400.1| - 1.8e-31 108.0 0.1 3.5e-31 107.1 0.1 1.5 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_45 PF14947.1 gi|20093325|ref|NP_619400.1| - 0.072 12.9 1.1 0.23 11.3 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix Peptidase_M48 PF01435.13 gi|20093326|ref|NP_619401.1| - 1e-39 136.4 0.0 1.3e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|20093326|ref|NP_619401.1| - 4.5e-05 22.5 0.0 8e-05 21.7 0.0 1.5 2 0 0 2 2 2 1 BlaR1 peptidase M56 CitMHS PF03600.11 gi|20093326|ref|NP_619401.1| - 0.0047 15.5 0.0 0.0088 14.6 0.0 1.4 1 1 0 1 1 1 1 Citrate transporter BSP PF04450.7 gi|20093326|ref|NP_619401.1| - 0.056 12.9 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria Peptidase_MA_2 PF13485.1 gi|20093326|ref|NP_619401.1| - 0.1 12.6 0.3 0.36 10.8 0.2 2.0 1 1 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|20093326|ref|NP_619401.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family WLM PF08325.5 gi|20093326|ref|NP_619401.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 WLM domain PrgI PF12666.2 gi|20093326|ref|NP_619401.1| - 7.8 6.7 7.8 8.9 6.5 0.6 2.3 2 0 0 2 2 2 0 PrgI family protein Thymidylat_synt PF00303.14 gi|20093327|ref|NP_619402.1| - 9.7e-37 126.4 0.0 6.1e-36 123.8 0.0 1.9 1 1 0 1 1 1 1 Thymidylate synthase EPSP_synthase PF00275.15 gi|20093328|ref|NP_619403.1| - 4.3e-114 381.1 0.8 5.1e-114 380.9 0.6 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PrmA PF06325.8 gi|20093329|ref|NP_619404.1| - 2.8e-06 26.6 0.0 5.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|20093329|ref|NP_619404.1| - 2.3e-05 23.8 0.0 3.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|20093329|ref|NP_619404.1| - 4.1e-05 23.6 0.0 6.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|20093329|ref|NP_619404.1| - 0.003 16.9 0.0 0.0048 16.3 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CbiA PF01656.18 gi|20093329|ref|NP_619404.1| - 0.018 14.4 0.0 0.14 11.5 0.0 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Methyltransf_31 PF13847.1 gi|20093329|ref|NP_619404.1| - 0.027 14.0 0.2 0.42 10.1 0.1 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093329|ref|NP_619404.1| - 0.074 13.4 0.0 0.16 12.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093329|ref|NP_619404.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|20093329|ref|NP_619404.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase MCR_alpha_N PF02745.10 gi|20093330|ref|NP_619405.1| - 1.6e-147 489.8 1.6 2e-147 489.4 1.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|20093330|ref|NP_619405.1| - 1.9e-66 221.8 4.4 6.1e-66 220.2 3.0 1.9 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain NAD-GH PF10712.4 gi|20093330|ref|NP_619405.1| - 0.09 11.0 0.0 0.13 10.5 0.0 1.1 1 0 0 1 1 1 0 NAD-specific glutamate dehydrogenase MCR_gamma PF02240.11 gi|20093331|ref|NP_619406.1| - 6.9e-124 411.8 0.2 7.8e-124 411.6 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|20093332|ref|NP_619407.1| - 5.7e-43 146.6 4.1 1.5e-36 125.6 0.4 3.1 1 1 2 3 3 3 3 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|20093333|ref|NP_619408.1| - 4.2e-57 191.9 0.1 4.9e-57 191.7 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|20093334|ref|NP_619409.1| - 5.1e-127 422.4 6.2 8e-127 421.7 4.3 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|20093334|ref|NP_619409.1| - 1.3e-82 275.7 3.3 1.3e-82 275.7 2.3 1.5 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF512 PF04459.7 gi|20093335|ref|NP_619410.1| - 1.8e-28 98.9 0.0 2.8e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|20093335|ref|NP_619410.1| - 2e-09 37.8 6.4 7.6e-08 32.6 3.8 3.0 2 1 0 2 2 2 1 Radical SAM superfamily PaRep2b PF07775.6 gi|20093335|ref|NP_619410.1| - 0.025 12.7 0.0 0.035 12.3 0.0 1.1 1 0 0 1 1 1 0 PaRep2b protein PolC_DP2 PF03833.8 gi|20093336|ref|NP_619411.1| - 0 1212.8 0.0 0 1212.1 0.0 1.3 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|20093336|ref|NP_619411.1| - 0.00017 21.5 3.7 0.00017 21.5 2.5 2.4 2 0 0 2 2 2 1 TerY-C metal binding domain DUF2072 PF09845.4 gi|20093336|ref|NP_619411.1| - 0.06 13.2 0.1 0.06 13.2 0.1 3.0 3 0 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) DUF555 PF04475.7 gi|20093336|ref|NP_619411.1| - 0.19 11.7 1.2 2.6 8.1 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF555) HypA PF01155.14 gi|20093336|ref|NP_619411.1| - 3.6 7.2 12.9 0.38 10.4 0.2 3.1 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF4212 PF13937.1 gi|20093337|ref|NP_619412.1| - 0.0051 16.7 0.2 0.0067 16.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF4191 PF13829.1 gi|20093337|ref|NP_619412.1| - 0.011 14.9 0.3 0.013 14.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Tic20 PF09685.5 gi|20093337|ref|NP_619412.1| - 0.015 15.2 0.5 0.019 14.9 0.4 1.2 1 0 0 1 1 1 0 Tic20-like protein DUF2207 PF09972.4 gi|20093337|ref|NP_619412.1| - 0.018 13.6 0.3 0.02 13.4 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4181 PF13789.1 gi|20093337|ref|NP_619412.1| - 0.043 13.7 0.7 0.056 13.3 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) DUF872 PF05915.7 gi|20093337|ref|NP_619412.1| - 0.13 12.0 1.8 0.28 11.0 1.3 1.6 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3899 PF13038.1 gi|20093337|ref|NP_619412.1| - 0.15 12.1 0.1 0.15 12.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) DUF2231 PF09990.4 gi|20093337|ref|NP_619412.1| - 0.19 12.0 4.2 0.51 10.7 0.6 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF3040 PF11239.3 gi|20093337|ref|NP_619412.1| - 0.62 10.1 2.4 0.93 9.5 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) PGG PF13962.1 gi|20093337|ref|NP_619412.1| - 0.89 9.1 3.8 1.1 8.9 2.7 1.3 1 1 0 1 1 1 0 Domain of unknown function IncA PF04156.9 gi|20093337|ref|NP_619412.1| - 0.99 8.9 3.9 1.5 8.3 2.7 1.3 1 0 0 1 1 1 0 IncA protein Sua5_yciO_yrdC PF01300.13 gi|20093338|ref|NP_619413.1| - 4.1e-56 189.0 0.0 6.2e-56 188.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|20093338|ref|NP_619413.1| - 3.1e-24 85.4 0.0 4.8e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding DUF613 PF04764.7 gi|20093338|ref|NP_619413.1| - 0.052 13.4 0.0 0.089 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF613) RuBisCO_large PF00016.15 gi|20093339|ref|NP_619414.1| - 5.5e-83 278.3 0.0 6.5e-83 278.1 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|20093339|ref|NP_619414.1| - 3.6e-23 81.6 0.0 1.6e-22 79.5 0.0 2.0 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain cobW PF02492.14 gi|20093340|ref|NP_619415.1| - 2.8e-38 131.1 0.2 5.5e-38 130.1 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|20093340|ref|NP_619415.1| - 0.024 13.7 0.1 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|20093340|ref|NP_619415.1| - 0.027 13.9 0.2 0.06 12.7 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|20093340|ref|NP_619415.1| - 0.04 14.2 1.7 0.091 13.0 1.2 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|20093340|ref|NP_619415.1| - 0.044 13.2 0.2 0.086 12.3 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase GTP_EFTU PF00009.22 gi|20093340|ref|NP_619415.1| - 0.046 13.1 0.2 6.7 6.1 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|20093340|ref|NP_619415.1| - 0.055 13.1 1.2 0.11 12.1 0.3 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|20093340|ref|NP_619415.1| - 0.06 13.4 0.1 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|20093340|ref|NP_619415.1| - 0.062 12.9 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|20093340|ref|NP_619415.1| - 0.087 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain URO-D PF01208.12 gi|20093342|ref|NP_619417.1| - 4e-66 223.2 0.0 2.5e-63 214.0 0.0 2.2 2 0 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|20093342|ref|NP_619417.1| - 5.3e-22 77.9 0.1 2.7e-21 75.6 0.0 2.2 3 0 0 3 3 3 1 B12 binding domain B12-binding_2 PF02607.12 gi|20093342|ref|NP_619417.1| - 4.6e-14 52.2 0.1 1.5e-13 50.5 0.1 2.0 1 0 0 1 1 1 1 B12 binding domain FtsA PF14450.1 gi|20093342|ref|NP_619417.1| - 0.043 13.6 0.1 0.81 9.5 0.0 2.8 3 1 0 3 3 3 0 Cell division protein FtsA URO-D PF01208.12 gi|20093343|ref|NP_619418.1| - 8.7e-80 268.2 0.0 9.9e-80 268.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF3551 PF12071.3 gi|20093343|ref|NP_619418.1| - 0.53 9.8 3.0 0.73 9.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3551) DUF1724 PF08350.5 gi|20093344|ref|NP_619419.1| - 1e-24 85.8 0.4 3.3e-24 84.2 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|20093344|ref|NP_619419.1| - 0.0006 19.4 0.2 0.0013 18.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20093344|ref|NP_619419.1| - 0.0007 19.3 0.1 0.0012 18.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|20093344|ref|NP_619419.1| - 0.017 15.4 0.1 0.035 14.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TMPIT PF07851.8 gi|20093344|ref|NP_619419.1| - 0.039 13.0 0.3 0.054 12.5 0.2 1.2 1 0 0 1 1 1 0 TMPIT-like protein GAF_2 PF13185.1 gi|20093345|ref|NP_619420.1| - 1.2e-35 123.1 0.0 3.5e-20 72.9 0.0 2.5 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|20093345|ref|NP_619420.1| - 3.6e-34 116.7 1.7 8.4e-17 61.0 0.1 4.5 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|20093345|ref|NP_619420.1| - 1.1e-21 76.5 0.0 2.4e-21 75.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|20093345|ref|NP_619420.1| - 4.9e-17 62.2 0.2 0.00011 22.5 0.0 4.1 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|20093345|ref|NP_619420.1| - 9.5e-13 48.1 0.0 4.6e-06 26.6 0.0 3.7 4 0 0 4 4 4 2 PAS fold PAS PF00989.19 gi|20093345|ref|NP_619420.1| - 2.8e-09 36.7 0.2 8.2e-06 25.5 0.0 3.3 4 0 0 4 4 4 2 PAS fold GAF_3 PF13492.1 gi|20093345|ref|NP_619420.1| - 1.3e-08 35.0 0.0 0.0016 18.5 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.1 gi|20093345|ref|NP_619420.1| - 0.0083 15.9 0.0 0.028 14.2 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_11 PF14598.1 gi|20093345|ref|NP_619420.1| - 0.0091 15.9 0.0 3.8 7.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain Hydantoinase_A PF01968.13 gi|20093346|ref|NP_619421.1| - 3.9e-90 301.8 0.3 4.9e-89 298.2 0.0 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20093346|ref|NP_619421.1| - 2.9e-39 134.3 4.0 2.3e-36 124.9 0.1 2.8 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20093346|ref|NP_619421.1| - 2.2e-06 26.3 1.2 0.0018 16.6 0.0 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20093346|ref|NP_619421.1| - 0.0069 15.7 1.0 0.032 13.5 0.7 2.1 1 1 1 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|20093346|ref|NP_619421.1| - 0.072 12.0 0.3 0.35 9.7 0.0 2.0 2 0 0 2 2 2 0 StbA protein FtsA PF14450.1 gi|20093346|ref|NP_619421.1| - 0.49 10.2 2.5 1.9 8.3 0.3 2.4 2 0 0 2 2 2 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|20093347|ref|NP_619422.1| - 8.9e-93 310.5 0.2 2.9e-92 308.8 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|20093347|ref|NP_619422.1| - 5.6e-39 133.4 1.7 5.5e-35 120.4 0.1 2.8 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|20093347|ref|NP_619422.1| - 3.6e-06 25.5 1.5 0.0048 15.2 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|20093347|ref|NP_619422.1| - 0.00043 19.6 0.1 0.13 11.5 0.1 2.5 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DDR PF08841.5 gi|20093347|ref|NP_619422.1| - 0.032 13.0 0.6 0.075 11.8 0.4 1.6 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Metallophos_2 PF12850.2 gi|20093348|ref|NP_619423.1| - 4.3e-20 72.1 0.0 5.5e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|20093348|ref|NP_619423.1| - 2.9e-14 52.9 3.1 2.5e-13 49.9 2.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|20093348|ref|NP_619423.1| - 0.0019 17.4 0.0 0.0036 16.5 0.0 1.4 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily MutL PF13941.1 gi|20093348|ref|NP_619423.1| - 0.0048 15.2 0.0 0.0066 14.8 0.0 1.1 1 0 0 1 1 1 1 MutL protein DUF2124 PF09897.4 gi|20093348|ref|NP_619423.1| - 0.077 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) PhaG_MnhG_YufB PF03334.9 gi|20093350|ref|NP_619425.1| - 2.2e-25 88.4 7.2 2.9e-25 88.1 5.0 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF973 PF06157.6 gi|20093350|ref|NP_619425.1| - 0.31 9.9 4.3 0.33 9.8 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) KdpA PF03814.10 gi|20093350|ref|NP_619425.1| - 0.31 8.9 10.2 0.039 11.9 1.5 2.0 1 1 1 2 2 2 0 Potassium-transporting ATPase A subunit MrpF_PhaF PF04066.8 gi|20093351|ref|NP_619426.1| - 1.1e-12 48.0 4.9 1.1e-12 48.0 3.4 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.4 gi|20093351|ref|NP_619426.1| - 0.93 9.3 7.6 4.5 7.1 5.3 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) MNHE PF01899.11 gi|20093352|ref|NP_619427.1| - 1.3e-46 158.0 0.3 1.5e-46 157.8 0.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|20093353|ref|NP_619428.1| - 6e-52 176.5 23.8 6e-52 176.5 16.5 2.9 3 2 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|20093353|ref|NP_619428.1| - 0.0014 18.4 1.9 0.0014 18.4 1.3 3.3 3 1 1 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus CybS PF05328.7 gi|20093353|ref|NP_619428.1| - 9.1 5.9 9.7 0.26 10.9 0.5 3.0 3 0 0 3 3 3 0 CybS Oxidored_q2 PF00420.19 gi|20093354|ref|NP_619429.1| - 1.7e-37 126.9 1.4 1.9e-37 126.7 1.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YrhK PF14145.1 gi|20093354|ref|NP_619429.1| - 0.0026 17.3 2.1 0.0044 16.6 1.5 1.4 1 0 0 1 1 1 1 YrhK-like protein PRRSV_2b PF07069.6 gi|20093354|ref|NP_619429.1| - 0.18 12.1 0.1 0.18 12.1 0.0 2.0 2 1 0 2 2 2 0 Porcine reproductive and respiratory syndrome virus 2b MnhB PF04039.8 gi|20093355|ref|NP_619430.1| - 6.6e-20 71.4 9.0 7.5e-20 71.2 6.2 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|20093356|ref|NP_619431.1| - 2.8e-70 236.6 14.6 2.8e-70 236.6 10.1 3.7 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|20093356|ref|NP_619431.1| - 5.6e-18 64.6 4.2 5.6e-18 64.6 2.9 4.6 5 0 0 5 5 5 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|20093356|ref|NP_619431.1| - 6.1e-06 25.7 0.1 6.1e-06 25.7 0.1 2.9 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2108 PF09881.4 gi|20093356|ref|NP_619431.1| - 0.35 10.7 11.7 0.14 12.0 4.4 3.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) HSP20 PF00011.16 gi|20093357|ref|NP_619432.1| - 1.1e-06 28.4 0.3 3.9e-05 23.4 0.0 2.1 1 1 1 2 2 2 2 Hsp20/alpha crystallin family CS PF04969.11 gi|20093357|ref|NP_619432.1| - 0.01 16.3 0.0 0.015 15.7 0.0 1.2 1 0 0 1 1 1 0 CS domain GvpH PF05455.6 gi|20093357|ref|NP_619432.1| - 0.075 12.6 0.1 9.6 5.8 0.0 2.2 2 0 0 2 2 2 0 GvpH HSP20 PF00011.16 gi|20093358|ref|NP_619433.1| - 1.1e-09 38.0 0.6 2.2e-07 30.6 0.4 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|20093358|ref|NP_619433.1| - 0.03 14.8 0.1 0.047 14.2 0.1 1.2 1 0 0 1 1 1 0 CS domain AAA PF00004.24 gi|20093359|ref|NP_619434.1| - 4.9e-100 330.9 0.1 2.3e-49 166.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|20093359|ref|NP_619434.1| - 2.9e-28 97.6 0.7 8.4e-27 92.9 0.7 2.8 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|20093359|ref|NP_619434.1| - 1.6e-16 60.6 0.0 9.7e-07 28.8 0.0 3.1 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|20093359|ref|NP_619434.1| - 6e-16 57.8 0.3 1.9e-15 56.2 0.2 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|20093359|ref|NP_619434.1| - 1.4e-15 56.9 0.1 8.4e-08 31.5 0.0 3.2 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|20093359|ref|NP_619434.1| - 4.3e-15 56.1 0.0 3.5e-06 27.1 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|20093359|ref|NP_619434.1| - 1.4e-13 50.7 1.0 4.7e-05 23.1 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|20093359|ref|NP_619434.1| - 1.3e-12 48.6 0.0 2.4e-05 25.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|20093359|ref|NP_619434.1| - 2.1e-12 47.3 0.2 0.00043 20.4 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|20093359|ref|NP_619434.1| - 5.9e-12 45.5 0.0 6.6e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|20093359|ref|NP_619434.1| - 8.4e-12 44.4 0.0 3.4e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|20093359|ref|NP_619434.1| - 1.5e-11 44.3 0.0 2.4e-05 24.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|20093359|ref|NP_619434.1| - 2.8e-10 39.6 0.0 0.00032 19.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.1 gi|20093359|ref|NP_619434.1| - 8.4e-10 38.2 0.2 0.0024 17.5 0.1 3.1 2 0 0 2 2 2 2 Part of AAA domain Sigma54_activat PF00158.21 gi|20093359|ref|NP_619434.1| - 2.6e-08 33.5 0.1 0.0093 15.4 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|20093359|ref|NP_619434.1| - 3e-08 33.2 0.0 0.0046 16.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|20093359|ref|NP_619434.1| - 3.7e-08 33.7 0.2 0.0064 16.7 0.0 3.1 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.16 gi|20093359|ref|NP_619434.1| - 1.6e-07 30.7 0.1 0.014 14.5 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|20093359|ref|NP_619434.1| - 2.1e-07 31.0 0.0 0.014 15.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|20093359|ref|NP_619434.1| - 5.5e-07 29.2 0.0 0.025 14.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|20093359|ref|NP_619434.1| - 9.9e-07 29.1 0.1 0.056 13.7 0.0 2.9 3 0 0 3 3 2 2 ABC transporter NACHT PF05729.7 gi|20093359|ref|NP_619434.1| - 1.4e-06 28.1 0.1 0.31 10.6 0.0 4.0 4 0 0 4 4 4 2 NACHT domain RNA_helicase PF00910.17 gi|20093359|ref|NP_619434.1| - 3.5e-06 27.1 0.0 0.093 12.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|20093359|ref|NP_619434.1| - 3.9e-06 26.9 0.0 0.083 12.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|20093359|ref|NP_619434.1| - 6.1e-06 25.3 0.0 0.061 12.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|20093359|ref|NP_619434.1| - 9.3e-06 25.1 4.7 0.18 11.1 0.1 3.8 2 2 1 3 3 3 2 AAA domain PhoH PF02562.11 gi|20093359|ref|NP_619434.1| - 1.8e-05 24.0 0.1 0.12 11.6 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Arch_ATPase PF01637.13 gi|20093359|ref|NP_619434.1| - 2.5e-05 24.0 1.2 0.22 11.2 0.0 3.3 3 2 0 3 3 2 2 Archaeal ATPase AAA_11 PF13086.1 gi|20093359|ref|NP_619434.1| - 5.5e-05 22.8 0.2 0.18 11.3 0.0 2.8 2 1 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|20093359|ref|NP_619434.1| - 0.0001 22.0 0.5 0.21 11.4 0.0 3.7 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.20 gi|20093359|ref|NP_619434.1| - 0.00011 21.8 0.0 0.36 10.3 0.0 2.5 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|20093359|ref|NP_619434.1| - 0.00014 21.4 0.1 0.27 10.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|20093359|ref|NP_619434.1| - 0.00023 20.7 0.0 0.72 9.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|20093359|ref|NP_619434.1| - 0.00053 19.5 0.2 1.1 8.9 0.0 2.9 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|20093359|ref|NP_619434.1| - 0.00054 18.9 0.0 0.75 8.6 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|20093359|ref|NP_619434.1| - 0.00055 19.0 0.0 0.49 9.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|20093359|ref|NP_619434.1| - 0.00062 18.7 0.0 0.41 9.4 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain KaiC PF06745.8 gi|20093359|ref|NP_619434.1| - 0.00069 18.7 6.2 1.3 8.1 0.0 4.3 3 2 2 5 5 5 2 KaiC ResIII PF04851.10 gi|20093359|ref|NP_619434.1| - 0.0018 18.1 0.0 0.55 10.0 0.0 2.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|20093359|ref|NP_619434.1| - 0.0022 17.7 5.0 2.2 7.9 0.0 4.2 3 2 1 4 4 3 2 NTPase AFG1_ATPase PF03969.11 gi|20093359|ref|NP_619434.1| - 0.0032 16.3 0.0 1.1 8.0 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase Guanylate_kin PF00625.16 gi|20093359|ref|NP_619434.1| - 0.0033 16.8 0.4 3.5 7.0 0.0 4.0 4 1 1 5 5 3 0 Guanylate kinase AAA_23 PF13476.1 gi|20093359|ref|NP_619434.1| - 0.0035 17.6 1.6 6 7.1 0.0 3.7 4 0 0 4 4 3 0 AAA domain Viral_helicase1 PF01443.13 gi|20093359|ref|NP_619434.1| - 0.0045 16.5 0.0 3.6 7.0 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CPT PF07931.7 gi|20093359|ref|NP_619434.1| - 0.008 15.8 0.0 1.1 8.7 0.0 2.9 3 0 0 3 3 3 1 Chloramphenicol phosphotransferase-like protein SKI PF01202.17 gi|20093359|ref|NP_619434.1| - 0.012 15.4 2.7 2.2 8.1 0.0 3.0 3 0 0 3 3 2 0 Shikimate kinase Cytidylate_kin2 PF13189.1 gi|20093359|ref|NP_619434.1| - 0.017 15.0 2.0 0.81 9.5 0.0 3.0 3 0 0 3 3 3 0 Cytidylate kinase-like family GIDA_assoc_3 PF13932.1 gi|20093359|ref|NP_619434.1| - 0.022 14.8 0.4 0.38 10.8 0.0 3.1 3 0 0 3 3 2 0 GidA associated domain 3 T2SE PF00437.15 gi|20093359|ref|NP_619434.1| - 0.023 13.5 0.0 3.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein KAP_NTPase PF07693.9 gi|20093359|ref|NP_619434.1| - 0.034 13.1 0.1 3.7 6.4 0.0 3.0 2 2 1 3 3 3 0 KAP family P-loop domain KTI12 PF08433.5 gi|20093359|ref|NP_619434.1| - 0.039 13.1 0.0 9.1 5.3 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Bac_DnaA PF00308.13 gi|20093359|ref|NP_619434.1| - 0.042 13.4 0.0 13 5.3 0.0 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein AAA_29 PF13555.1 gi|20093359|ref|NP_619434.1| - 0.044 13.3 0.0 9.9 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF1677 PF07911.8 gi|20093359|ref|NP_619434.1| - 0.048 13.8 0.0 2.3 8.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1677) IPT PF01745.11 gi|20093359|ref|NP_619434.1| - 0.059 12.5 0.1 12 4.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Torsin PF06309.6 gi|20093359|ref|NP_619434.1| - 0.15 11.9 0.0 5 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin HTH_5 PF01022.15 gi|20093360|ref|NP_619435.1| - 5.9e-16 57.8 0.2 8.9e-12 44.4 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|20093360|ref|NP_619435.1| - 2.1e-12 46.6 0.1 1.2e-09 37.8 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|20093360|ref|NP_619435.1| - 1e-09 37.9 0.1 0.0017 17.9 0.0 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|20093360|ref|NP_619435.1| - 3.2e-05 23.5 0.0 0.017 14.8 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|20093360|ref|NP_619435.1| - 3.6e-05 23.6 0.0 0.027 14.4 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|20093360|ref|NP_619435.1| - 0.00053 19.4 0.6 0.17 11.4 0.0 3.1 3 0 0 3 3 3 1 LexA DNA binding domain MarR PF01047.17 gi|20093360|ref|NP_619435.1| - 0.00056 19.5 0.0 0.072 12.8 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|20093360|ref|NP_619435.1| - 0.00075 19.7 0.0 0.065 13.5 0.0 2.6 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|20093360|ref|NP_619435.1| - 0.0016 17.7 0.2 0.012 14.9 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|20093360|ref|NP_619435.1| - 0.0068 16.0 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 HTH domain DUF742 PF05331.6 gi|20093360|ref|NP_619435.1| - 0.016 14.7 0.0 2 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF742) HTH_36 PF13730.1 gi|20093360|ref|NP_619435.1| - 0.022 14.8 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|20093360|ref|NP_619435.1| - 0.029 14.1 0.8 0.33 10.7 0.0 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain PadR PF03551.9 gi|20093360|ref|NP_619435.1| - 0.03 14.0 0.0 3.4 7.5 0.0 2.8 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|20093360|ref|NP_619435.1| - 0.081 13.0 0.0 0.51 10.4 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator SecIII_SopE_N PF05364.9 gi|20093360|ref|NP_619435.1| - 0.12 12.2 0.2 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 Salmonella type III secretion SopE effector N-terminus IstB_IS21 PF01695.12 gi|20093360|ref|NP_619435.1| - 0.14 11.5 0.5 0.28 10.5 0.2 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein Beta_helix PF13229.1 gi|20093361|ref|NP_619436.1| - 9.8e-60 200.8 164.5 2.1e-21 76.3 27.9 3.3 1 1 3 4 4 4 4 Right handed beta helix region NosD PF05048.8 gi|20093361|ref|NP_619436.1| - 9.8e-46 155.8 85.7 6.9e-20 71.2 16.2 3.1 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.6 gi|20093361|ref|NP_619436.1| - 4.7e-13 48.8 60.8 6.2e-09 35.3 11.6 4.5 1 1 3 4 4 4 3 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|20093361|ref|NP_619436.1| - 3.7e-05 23.9 29.4 3.7e-05 23.9 20.3 3.8 1 1 2 3 3 3 2 Pectate lyase superfamily protein Pectinesterase PF01095.14 gi|20093361|ref|NP_619436.1| - 0.0052 15.4 0.4 0.0052 15.4 0.3 2.0 2 0 0 2 2 2 1 Pectinesterase Pep_M12B_propep PF01562.14 gi|20093363|ref|NP_619438.1| - 5.4e-06 26.2 0.2 1.3e-05 25.0 0.1 1.6 1 1 1 2 2 2 1 Reprolysin family propeptide DUF2072 PF09845.4 gi|20093364|ref|NP_619439.1| - 2.4e-50 169.8 0.1 3.2e-50 169.4 0.0 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-ribbon_3 PF13248.1 gi|20093364|ref|NP_619439.1| - 0.0051 15.9 1.7 2.2 7.5 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|20093364|ref|NP_619439.1| - 0.0052 16.2 1.4 0.0097 15.3 1.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|20093364|ref|NP_619439.1| - 0.017 14.4 1.7 1.3 8.4 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding AnfO_nitrog PF09582.5 gi|20093364|ref|NP_619439.1| - 0.019 14.1 0.8 0.039 13.1 0.2 1.6 1 1 1 2 2 2 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) zf-ISL3 PF14690.1 gi|20093364|ref|NP_619439.1| - 0.063 13.3 0.7 11 6.1 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|20093364|ref|NP_619439.1| - 2.6 7.8 4.7 3 7.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|20093364|ref|NP_619439.1| - 2.8 7.7 5.6 11 5.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|20093364|ref|NP_619439.1| - 4.8 6.8 5.6 3.4 7.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Pribosyltran PF00156.22 gi|20093365|ref|NP_619440.1| - 2.6e-23 82.0 0.0 8.2e-23 80.4 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|20093365|ref|NP_619440.1| - 0.0096 15.1 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF1724 PF08350.5 gi|20093366|ref|NP_619441.1| - 1.2e-22 79.1 0.9 2.8e-22 77.9 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|20093366|ref|NP_619441.1| - 0.00024 21.3 0.2 0.0006 20.0 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|20093366|ref|NP_619441.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|20093366|ref|NP_619441.1| - 0.018 14.8 0.6 0.059 13.1 0.3 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_11 PF08279.7 gi|20093366|ref|NP_619441.1| - 0.097 12.3 0.8 0.2 11.3 0.2 1.8 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.1 gi|20093366|ref|NP_619441.1| - 0.27 10.6 2.0 0.42 10.0 0.1 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Formyl_trans_N PF00551.14 gi|20093368|ref|NP_619443.1| - 1.5e-14 53.9 0.0 1.8e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Inhibitor_I42 PF09394.5 gi|20093369|ref|NP_619444.1| - 2.7e-29 101.3 0.5 5.8e-29 100.2 0.1 1.8 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 DUF3244 PF11589.3 gi|20093369|ref|NP_619444.1| - 0.078 12.7 0.4 0.67 9.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) zf-FCS PF06467.9 gi|20093370|ref|NP_619445.1| - 0.03 13.9 2.9 0.03 13.9 2.0 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Hepcidin PF06446.7 gi|20093370|ref|NP_619445.1| - 0.03 14.7 2.8 0.072 13.5 2.0 1.7 1 0 0 1 1 1 0 Hepcidin SRP54 PF00448.17 gi|20093371|ref|NP_619446.1| - 9.6e-73 243.8 0.4 1.6e-72 243.1 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|20093371|ref|NP_619446.1| - 6.2e-31 106.7 9.2 2.9e-30 104.6 4.6 2.8 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|20093371|ref|NP_619446.1| - 4.9e-21 74.6 0.3 4.6e-17 61.8 0.0 2.8 2 0 0 2 2 2 2 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|20093371|ref|NP_619446.1| - 5.1e-06 26.0 0.6 1.8e-05 24.2 0.2 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|20093371|ref|NP_619446.1| - 0.00019 21.1 0.1 0.00082 19.0 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|20093371|ref|NP_619446.1| - 0.00021 21.1 0.0 0.00044 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|20093371|ref|NP_619446.1| - 0.00022 20.3 0.0 0.00054 19.1 0.0 1.6 1 0 0 1 1 1 1 6-phosphofructo-2-kinase cobW PF02492.14 gi|20093371|ref|NP_619446.1| - 0.00034 20.0 0.3 0.0038 16.7 0.1 2.4 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|20093371|ref|NP_619446.1| - 0.00036 19.6 0.0 0.00072 18.7 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|20093371|ref|NP_619446.1| - 0.00053 19.7 0.1 0.0014 18.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|20093371|ref|NP_619446.1| - 0.0019 18.3 0.1 0.0085 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|20093371|ref|NP_619446.1| - 0.0021 18.0 0.1 0.0046 16.9 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|20093371|ref|NP_619446.1| - 0.0028 17.3 0.1 0.033 13.9 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain KTI12 PF08433.5 gi|20093371|ref|NP_619446.1| - 0.004 16.4 0.0 0.0083 15.3 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|20093371|ref|NP_619446.1| - 0.0041 17.9 0.1 0.012 16.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|20093371|ref|NP_619446.1| - 0.0043 15.8 0.1 0.015 14.0 0.0 1.9 2 0 0 2 2 2 1 ArgK protein Thymidylate_kin PF02223.12 gi|20093371|ref|NP_619446.1| - 0.0064 15.8 0.4 0.032 13.5 0.1 2.2 2 0 0 2 2 2 1 Thymidylate kinase AAA_31 PF13614.1 gi|20093371|ref|NP_619446.1| - 0.0064 16.4 0.0 0.78 9.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF1611 PF07755.6 gi|20093371|ref|NP_619446.1| - 0.012 14.2 0.3 0.021 13.4 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) AAA_5 PF07728.9 gi|20093371|ref|NP_619446.1| - 0.028 14.1 1.8 1.5 8.5 0.1 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|20093371|ref|NP_619446.1| - 0.053 12.9 0.5 0.078 12.4 0.3 1.5 1 1 0 1 1 1 0 AAA-like domain TrwB_AAD_bind PF10412.4 gi|20093371|ref|NP_619446.1| - 0.061 11.9 0.2 0.11 11.0 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ArsA_ATPase PF02374.10 gi|20093371|ref|NP_619446.1| - 0.093 11.7 6.5 0.57 9.1 0.4 2.8 2 1 0 2 2 2 0 Anion-transporting ATPase ATP_bind_1 PF03029.12 gi|20093371|ref|NP_619446.1| - 0.094 12.2 0.7 0.28 10.6 0.0 2.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|20093371|ref|NP_619446.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|20093371|ref|NP_619446.1| - 0.21 11.5 0.6 0.94 9.4 0.2 2.1 1 1 1 2 2 2 0 AAA domain PKD PF00801.15 gi|20093372|ref|NP_619447.1| - 3.6e-187 606.4 173.3 2.5e-18 65.6 6.0 14.1 13 0 0 13 13 13 12 PKD domain DUF3344 PF11824.3 gi|20093372|ref|NP_619447.1| - 2.3e-170 564.9 68.6 1.3e-69 234.6 15.3 8.7 7 4 2 10 10 10 3 Protein of unknown function (DUF3344) DUF2341 PF10102.4 gi|20093372|ref|NP_619447.1| - 6.4e-43 144.8 2.9 4.7e-22 77.9 0.3 6.2 6 0 0 6 6 6 2 Domain of unknown function (DUF2341) CARDB PF07705.6 gi|20093372|ref|NP_619447.1| - 9.4e-40 134.7 23.2 2.7e-23 81.9 7.4 10.5 11 1 1 12 12 12 2 CARDB DUF1918 PF08940.6 gi|20093372|ref|NP_619447.1| - 0.0068 15.7 0.0 13 5.1 0.0 5.8 7 0 0 7 7 7 1 Domain of unknown function (DUF1918) EF-hand_1 PF00036.27 gi|20093372|ref|NP_619447.1| - 0.19 11.0 6.5 0.053 12.8 1.3 2.6 2 0 0 2 2 2 0 EF hand EF-hand_6 PF13405.1 gi|20093372|ref|NP_619447.1| - 0.21 11.5 3.8 0.19 11.7 0.3 2.8 2 0 0 2 2 2 0 EF-hand domain Glyco_hydro_65C PF03633.10 gi|20093372|ref|NP_619447.1| - 0.44 10.6 0.0 1.6e+02 2.4 0.0 4.6 5 0 0 5 5 5 0 Glycosyl hydrolase family 65, C-terminal domain EF-hand_8 PF13833.1 gi|20093372|ref|NP_619447.1| - 2.1 7.9 3.1 6.1 6.5 2.1 1.8 1 0 0 1 1 1 0 EF-hand domain pair PKD PF00801.15 gi|20093373|ref|NP_619448.1| - 7.6e-78 256.2 74.5 5.1e-19 67.7 5.0 6.7 6 0 0 6 6 6 5 PKD domain DUF3344 PF11824.3 gi|20093373|ref|NP_619448.1| - 1.8e-54 184.9 15.4 1.8e-54 184.9 10.6 3.5 4 1 0 4 4 4 1 Protein of unknown function (DUF3344) PQQ_3 PF13570.1 gi|20093373|ref|NP_619448.1| - 1.5e-42 142.6 32.2 3.4e-06 27.1 0.0 9.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|20093373|ref|NP_619448.1| - 3.5e-37 128.1 8.3 6.5e-15 55.2 0.4 4.0 2 1 2 4 4 4 3 PQQ-like domain CARDB PF07705.6 gi|20093373|ref|NP_619448.1| - 5e-23 81.0 2.7 5e-23 81.0 1.9 6.0 8 0 0 8 8 8 1 CARDB PQQ PF01011.16 gi|20093373|ref|NP_619448.1| - 8.2e-15 53.5 27.8 0.0045 16.4 0.1 8.0 8 0 0 8 8 8 5 PQQ enzyme repeat Reg_prop PF07494.6 gi|20093373|ref|NP_619448.1| - 0.00075 19.2 6.0 48 4.4 0.0 7.5 8 0 0 8 8 8 0 Two component regulator propeller EF-hand_1 PF00036.27 gi|20093373|ref|NP_619448.1| - 0.0091 15.2 1.4 0.0091 15.2 1.0 2.2 3 0 0 3 3 3 1 EF hand EF-hand_6 PF13405.1 gi|20093373|ref|NP_619448.1| - 0.015 15.1 0.7 0.096 12.6 0.2 2.6 2 0 0 2 2 2 0 EF-hand domain EF-hand_8 PF13833.1 gi|20093373|ref|NP_619448.1| - 0.2 11.2 2.2 0.44 10.1 1.5 1.6 1 0 0 1 1 1 0 EF-hand domain pair GATase PF00117.23 gi|20093374|ref|NP_619449.1| - 1.3e-41 142.1 0.0 1.5e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|20093374|ref|NP_619449.1| - 5.3e-13 48.9 0.5 8.4e-12 44.9 0.2 2.4 2 1 0 2 2 2 1 Peptidase C26 DeoC PF01791.4 gi|20093375|ref|NP_619450.1| - 7.3e-59 198.9 0.0 8.4e-59 198.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.1 gi|20093375|ref|NP_619450.1| - 0.11 11.7 0.4 2.2 7.4 0.0 2.8 1 1 2 3 3 3 0 Phosphoenolpyruvate phosphomutase DHQS PF01959.11 gi|20093376|ref|NP_619451.1| - 8.6e-155 514.7 1.8 9.9e-155 514.5 1.2 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) QRPTase_C PF01729.14 gi|20093376|ref|NP_619451.1| - 0.0035 16.8 0.1 0.0091 15.5 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Peripla_BP_4 PF13407.1 gi|20093376|ref|NP_619451.1| - 0.0071 15.7 0.9 3.4 6.9 0.0 2.9 3 0 0 3 3 3 2 Periplasmic binding protein domain Response_reg PF00072.19 gi|20093376|ref|NP_619451.1| - 0.018 15.0 0.0 0.18 11.8 0.0 2.3 2 0 0 2 2 2 0 Response regulator receiver domain DHquinase_I PF01487.10 gi|20093377|ref|NP_619452.1| - 5e-61 206.2 0.1 5.6e-61 206.0 0.1 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase HMGL-like PF00682.14 gi|20093377|ref|NP_619452.1| - 0.0019 17.9 0.3 1.6 8.3 0.0 2.3 2 0 0 2 2 2 2 HMGL-like Shikimate_dh_N PF08501.6 gi|20093378|ref|NP_619453.1| - 1.3e-24 86.0 0.0 3.3e-24 84.7 0.0 1.7 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|20093378|ref|NP_619453.1| - 4.9e-16 59.0 0.3 7.5e-16 58.4 0.2 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|20093378|ref|NP_619453.1| - 5.8e-05 23.4 0.4 0.00012 22.4 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|20093378|ref|NP_619453.1| - 0.00012 21.2 0.5 0.00055 19.1 0.3 2.1 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|20093378|ref|NP_619453.1| - 0.00022 21.3 1.2 0.00047 20.2 0.7 1.7 2 0 0 2 2 2 1 NADH(P)-binding TrkA_N PF02254.13 gi|20093378|ref|NP_619453.1| - 0.00022 21.1 0.7 0.00037 20.4 0.5 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|20093378|ref|NP_619453.1| - 0.00054 20.1 0.2 0.00079 19.6 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|20093378|ref|NP_619453.1| - 0.0085 15.5 0.3 0.018 14.4 0.2 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.14 gi|20093378|ref|NP_619453.1| - 0.012 14.6 0.1 0.94 8.5 0.1 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.9 gi|20093378|ref|NP_619453.1| - 0.026 14.3 0.1 0.038 13.8 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ldh_1_N PF00056.18 gi|20093378|ref|NP_619453.1| - 0.041 13.7 0.2 0.084 12.6 0.2 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|20093378|ref|NP_619453.1| - 0.062 12.9 0.7 0.098 12.2 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|20093378|ref|NP_619453.1| - 0.063 13.0 0.3 0.099 12.3 0.2 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|20093378|ref|NP_619453.1| - 0.063 12.6 0.1 0.1 11.9 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_2 PF00890.19 gi|20093378|ref|NP_619453.1| - 0.14 10.9 3.6 0.2 10.4 2.5 1.2 1 0 0 1 1 1 0 FAD binding domain PDH PF02153.12 gi|20093379|ref|NP_619454.1| - 2.3e-54 184.0 0.0 3.2e-54 183.5 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|20093379|ref|NP_619454.1| - 2e-08 34.2 0.0 4.4e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|20093379|ref|NP_619454.1| - 3.6e-06 27.3 0.0 1.4e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|20093379|ref|NP_619454.1| - 1.9e-05 23.9 0.0 5e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|20093379|ref|NP_619454.1| - 0.0081 16.6 0.1 0.035 14.6 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain Epimerase PF01370.16 gi|20093379|ref|NP_619454.1| - 0.013 14.8 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|20093379|ref|NP_619454.1| - 0.017 14.3 0.0 0.036 13.3 0.0 1.6 1 0 0 1 1 1 0 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|20093379|ref|NP_619454.1| - 0.029 14.1 1.4 0.58 9.8 1.0 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HEAT_2 PF13646.1 gi|20093380|ref|NP_619455.1| - 9.2e-55 182.9 18.8 3.1e-17 62.6 0.2 6.4 3 1 3 6 6 6 5 HEAT repeats HEAT_PBS PF03130.11 gi|20093380|ref|NP_619455.1| - 9.8e-45 146.4 16.2 1.6e-05 24.9 0.0 10.8 10 0 0 10 10 10 8 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|20093380|ref|NP_619455.1| - 2.2e-18 66.1 11.0 0.00071 19.9 0.9 7.4 6 2 1 7 7 7 4 HEAT-like repeat HEAT PF02985.17 gi|20093380|ref|NP_619455.1| - 4.9e-18 63.5 0.1 0.0031 17.4 0.0 7.1 7 0 0 7 7 7 3 HEAT repeat Arm PF00514.18 gi|20093380|ref|NP_619455.1| - 4.2e-08 32.7 0.4 1.6 8.6 0.0 6.8 6 1 2 8 8 8 2 Armadillo/beta-catenin-like repeat Vitellogenin_N PF01347.17 gi|20093380|ref|NP_619455.1| - 5.7e-05 21.5 2.3 0.26 9.4 0.0 3.5 1 1 1 4 4 4 2 Lipoprotein amino terminal region Adaptin_N PF01602.15 gi|20093380|ref|NP_619455.1| - 0.00045 18.6 0.5 0.016 13.5 0.0 2.4 1 1 2 3 3 3 2 Adaptin N terminal region IBN_N PF03810.14 gi|20093380|ref|NP_619455.1| - 0.019 14.8 0.0 23 5.0 0.0 4.3 5 0 0 5 5 5 0 Importin-beta N-terminal domain UPF0061 PF02696.9 gi|20093380|ref|NP_619455.1| - 0.098 10.9 0.1 0.15 10.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, YdiU/UPF0061 family ABC_tran PF00005.22 gi|20093381|ref|NP_619456.1| - 7.2e-30 104.0 0.0 9.9e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20093381|ref|NP_619456.1| - 2.8e-09 37.3 2.6 0.00034 20.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|20093381|ref|NP_619456.1| - 0.00016 21.8 0.9 0.0024 18.0 0.4 2.6 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|20093381|ref|NP_619456.1| - 0.00033 20.1 0.1 0.013 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|20093381|ref|NP_619456.1| - 0.002 17.3 0.0 0.0041 16.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|20093381|ref|NP_619456.1| - 0.0049 16.5 0.2 0.012 15.4 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|20093381|ref|NP_619456.1| - 0.0054 17.5 0.1 0.011 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|20093381|ref|NP_619456.1| - 0.0066 16.1 0.1 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|20093381|ref|NP_619456.1| - 0.0067 15.9 0.4 0.012 15.1 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.12 gi|20093381|ref|NP_619456.1| - 0.01 15.6 1.3 0.017 14.9 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|20093381|ref|NP_619456.1| - 0.014 14.3 0.2 0.021 13.7 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|20093381|ref|NP_619456.1| - 0.018 15.3 0.0 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|20093381|ref|NP_619456.1| - 0.019 15.2 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|20093381|ref|NP_619456.1| - 0.022 14.7 0.1 0.034 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|20093381|ref|NP_619456.1| - 0.022 13.6 0.2 0.037 12.8 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|20093381|ref|NP_619456.1| - 0.032 13.3 0.3 0.17 11.0 0.1 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|20093381|ref|NP_619456.1| - 0.036 13.7 0.3 0.063 12.9 0.2 1.3 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|20093381|ref|NP_619456.1| - 0.062 12.4 0.3 0.1 11.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|20093381|ref|NP_619456.1| - 0.085 12.5 0.2 0.25 11.0 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|20093381|ref|NP_619456.1| - 0.085 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|20093381|ref|NP_619456.1| - 0.11 11.7 0.1 0.27 10.4 0.0 1.6 2 0 0 2 2 1 0 PhoH-like protein AAA_13 PF13166.1 gi|20093381|ref|NP_619456.1| - 0.29 9.5 2.4 5.9 5.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|20093382|ref|NP_619457.1| - 6.1e-27 94.5 0.0 8.9e-27 94.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|20093382|ref|NP_619457.1| - 3.8e-14 52.7 0.2 7.8e-14 51.7 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|20093382|ref|NP_619457.1| - 8e-09 35.8 2.2 5.6e-07 29.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|20093382|ref|NP_619457.1| - 0.00029 20.8 0.1 0.00058 19.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|20093382|ref|NP_619457.1| - 0.00047 19.4 1.1 0.0076 15.4 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|20093382|ref|NP_619457.1| - 0.0021 17.5 0.1 0.086 12.2 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|20093382|ref|NP_619457.1| - 0.0026 17.8 0.5 0.011 15.8 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|20093382|ref|NP_619457.1| - 0.0038 16.3 1.4 0.29 10.1 0.3 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|20093382|ref|NP_619457.1| - 0.0044 16.4 0.2 0.025 14.0 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|20093382|ref|NP_619457.1| - 0.01 15.3 0.3 0.025 14.1 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|20093382|ref|NP_619457.1| - 0.018 14.2 0.0 0.018 14.2 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|20093382|ref|NP_619457.1| - 0.022 14.4 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|20093382|ref|NP_619457.1| - 0.025 13.4 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ArgK PF03308.11 gi|20093382|ref|NP_619457.1| - 0.052 12.3 0.0 0.11 11.2 0.0 1.5 2 0 0 2 2 2 0 ArgK protein NACHT PF05729.7 gi|20093382|ref|NP_619457.1| - 0.053 13.1 0.0 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|20093382|ref|NP_619457.1| - 0.1 12.9 0.0 1.5 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|20093383|ref|NP_619458.1| - 2.8e-18 66.0 14.7 2.8e-18 66.0 10.2 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|20093383|ref|NP_619458.1| - 2.3e-06 26.8 0.1 2.3e-06 26.8 0.1 3.3 4 1 1 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|20093384|ref|NP_619459.1| - 3.5e-31 108.1 5.1 5.8e-31 107.4 3.5 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|20093385|ref|NP_619460.1| - 1.3e-88 297.4 4.1 1.6e-88 297.1 2.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3023 PF11224.3 gi|20093385|ref|NP_619460.1| - 0.039 13.5 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3023) F_actin_cap_B PF01115.12 gi|20093385|ref|NP_619460.1| - 0.045 12.9 0.0 0.075 12.2 0.0 1.2 1 0 0 1 1 1 0 F-actin capping protein, beta subunit FmdE PF02663.9 gi|20093386|ref|NP_619461.1| - 3.1e-44 150.0 0.0 4e-44 149.6 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|20093386|ref|NP_619461.1| - 9.6e-09 34.8 1.2 2.2e-08 33.6 0.7 1.8 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger Zn-ribbon_8 PF09723.5 gi|20093386|ref|NP_619461.1| - 0.0059 16.5 0.7 0.023 14.6 0.5 2.0 2 0 0 2 2 2 1 Zinc ribbon domain LIM PF00412.17 gi|20093386|ref|NP_619461.1| - 0.0067 16.4 0.8 0.016 15.2 0.6 1.6 1 0 0 1 1 1 1 LIM domain OrfB_Zn_ribbon PF07282.6 gi|20093386|ref|NP_619461.1| - 0.014 15.0 0.2 0.037 13.6 0.1 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC_2 PF13913.1 gi|20093386|ref|NP_619461.1| - 0.02 14.5 0.1 0.047 13.3 0.1 1.6 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zinc_ribbon_5 PF13719.1 gi|20093386|ref|NP_619461.1| - 0.086 12.4 2.4 0.17 11.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Vps39_2 PF10367.4 gi|20093386|ref|NP_619461.1| - 0.1 12.7 0.8 0.16 12.1 0.5 1.4 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 zinc_ribbon_4 PF13717.1 gi|20093386|ref|NP_619461.1| - 0.11 12.1 2.8 0.23 11.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Peripla_BP_2 PF01497.13 gi|20093388|ref|NP_619463.1| - 5.5e-26 91.1 0.5 7.4e-26 90.7 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Seryl_tRNA_N PF02403.17 gi|20093388|ref|NP_619463.1| - 0.13 12.2 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain FecCD PF01032.13 gi|20093389|ref|NP_619464.1| - 1.3e-90 303.4 26.7 1.5e-90 303.2 18.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|20093389|ref|NP_619464.1| - 1.2e-06 28.0 16.6 1.9e-06 27.3 11.5 1.2 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|20093390|ref|NP_619465.1| - 1.5e-31 109.5 0.0 2.2e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|20093390|ref|NP_619465.1| - 5.4e-16 59.3 0.1 3.4e-07 30.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|20093390|ref|NP_619465.1| - 1.5e-07 30.8 8.0 0.00055 19.0 0.3 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|20093390|ref|NP_619465.1| - 6.5e-07 28.8 0.9 7.4e-05 22.0 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|20093390|ref|NP_619465.1| - 3e-05 23.9 0.0 0.00056 19.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|20093390|ref|NP_619465.1| - 9.5e-05 21.6 0.3 0.00016 20.8 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|20093390|ref|NP_619465.1| - 0.00013 21.7 0.0 0.00023 20.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|20093390|ref|NP_619465.1| - 0.00037 20.8 1.0 0.00082 19.7 0.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|20093390|ref|NP_619465.1| - 0.00074 19.6 1.0 0.0078 16.3 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|20093390|ref|NP_619465.1| - 0.0012 18.2 1.5 0.027 13.8 1.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|20093390|ref|NP_619465.1| - 0.0019 17.9 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|20093390|ref|NP_619465.1| - 0.0019 18.3 0.7 0.013 15.6 0.4 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|20093390|ref|NP_619465.1| - 0.0038 16.7 0.1 0.0094 15.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|20093390|ref|NP_619465.1| - 0.0039 16.8 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|20093390|ref|NP_619465.1| - 0.0064 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|20093390|ref|NP_619465.1| - 0.0081 15.8 0.3 0.017 14.7 0.1 1.6 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.1 gi|20093390|ref|NP_619465.1| - 0.0088 16.0 0.0 0.023 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|20093390|ref|NP_619465.1| - 0.0089 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|20093390|ref|NP_619465.1| - 0.011 14.6 0.1 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.4 gi|20093390|ref|NP_619465.1| - 0.011 15.1 0.0 0.052 13.0 0.0 2.0 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|20093390|ref|NP_619465.1| - 0.014 15.1 0.0 0.056 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|20093390|ref|NP_619465.1| - 0.015 14.3 0.3 0.053 12.6 0.0 2.1 3 0 0 3 3 3 0 KaiC ABC_ATPase PF09818.4 gi|20093390|ref|NP_619465.1| - 0.016 13.8 0.1 0.55 8.7 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|20093390|ref|NP_619465.1| - 0.018 14.9 0.0 0.033 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|20093390|ref|NP_619465.1| - 0.025 14.3 0.4 0.077 12.6 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_35 PF14516.1 gi|20093390|ref|NP_619465.1| - 0.034 12.7 0.0 0.051 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.7 gi|20093390|ref|NP_619465.1| - 0.042 12.9 0.0 0.065 12.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin PIF1 PF05970.9 gi|20093390|ref|NP_619465.1| - 0.043 12.7 0.1 0.062 12.2 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase KAP_NTPase PF07693.9 gi|20093390|ref|NP_619465.1| - 0.044 12.7 0.0 0.063 12.2 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MutS_V PF00488.16 gi|20093390|ref|NP_619465.1| - 0.046 13.1 0.1 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 MutS domain V AAA_10 PF12846.2 gi|20093390|ref|NP_619465.1| - 0.047 13.1 0.0 0.11 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain SbcCD_C PF13558.1 gi|20093390|ref|NP_619465.1| - 0.055 13.3 0.1 0.63 9.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|20093390|ref|NP_619465.1| - 0.055 12.3 0.1 0.098 11.5 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.10 gi|20093390|ref|NP_619465.1| - 0.061 11.9 0.0 0.095 11.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|20093390|ref|NP_619465.1| - 0.076 13.8 0.0 0.18 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|20093390|ref|NP_619465.1| - 0.11 12.7 0.0 0.37 10.9 0.0 1.9 2 0 0 2 2 2 0 RNA helicase NTPase_1 PF03266.10 gi|20093390|ref|NP_619465.1| - 0.11 12.1 0.4 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 NTPase SRP54 PF00448.17 gi|20093390|ref|NP_619465.1| - 0.11 11.8 0.2 0.22 10.9 0.0 1.5 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain TIM PF00121.13 gi|20093391|ref|NP_619466.1| - 5.3e-30 104.2 0.2 9e-28 96.9 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|20093391|ref|NP_619466.1| - 0.00018 20.6 1.0 0.00058 19.0 0.3 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.1 gi|20093391|ref|NP_619466.1| - 0.0035 17.0 0.2 2.7 7.7 0.0 2.3 2 0 0 2 2 2 2 HAD-hyrolase-like NMO PF03060.10 gi|20093391|ref|NP_619466.1| - 0.013 14.7 2.0 0.016 14.3 1.1 1.4 1 1 0 1 1 1 0 Nitronate monooxygenase FMN_dh PF01070.13 gi|20093391|ref|NP_619466.1| - 0.015 14.2 2.1 0.039 12.7 0.5 1.9 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|20093391|ref|NP_619466.1| - 0.017 14.2 0.0 0.035 13.1 0.0 1.5 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|20093391|ref|NP_619466.1| - 0.036 13.3 0.2 0.12 11.6 0.0 1.8 2 0 0 2 2 2 0 Histidine biosynthesis protein Fae PF08714.6 gi|20093392|ref|NP_619467.1| - 1.1e-72 243.0 0.1 2.2e-72 241.9 0.1 1.5 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|20093392|ref|NP_619467.1| - 9.9e-22 77.4 3.1 1.2e-20 73.8 2.1 2.2 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|20093392|ref|NP_619467.1| - 0.00014 21.0 1.6 0.00057 19.0 1.1 2.1 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Cas_csx3 PF09620.5 gi|20093392|ref|NP_619467.1| - 0.0051 16.5 0.1 1.4 8.7 0.0 2.7 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_csx3) PcrB PF01884.12 gi|20093392|ref|NP_619467.1| - 0.018 14.3 2.4 0.024 13.8 0.4 1.9 2 0 0 2 2 2 0 PcrB family QRPTase_C PF01729.14 gi|20093392|ref|NP_619467.1| - 0.022 14.3 0.1 0.041 13.3 0.1 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain HhH-GPD PF00730.20 gi|20093393|ref|NP_619468.1| - 1.4e-21 76.7 0.0 2e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|20093393|ref|NP_619468.1| - 4e-10 38.8 0.0 2.6e-09 36.2 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|20093393|ref|NP_619468.1| - 0.00012 22.1 3.0 0.00012 22.1 2.1 1.7 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|20093393|ref|NP_619468.1| - 0.00015 21.8 0.2 0.0011 19.1 0.1 2.1 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|20093393|ref|NP_619468.1| - 0.0052 16.6 0.0 1.3 9.0 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|20093393|ref|NP_619468.1| - 0.033 13.8 0.0 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) Yip1 PF04893.12 gi|20093394|ref|NP_619469.1| - 1.2e-24 86.7 23.0 1.2e-24 86.7 15.9 1.4 1 1 0 1 1 1 1 Yip1 domain TPR_12 PF13424.1 gi|20093395|ref|NP_619470.1| - 1.1e-42 143.7 10.6 1.7e-18 66.3 0.3 4.5 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|20093395|ref|NP_619470.1| - 4.2e-34 113.7 8.1 9.4e-08 31.4 0.0 6.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|20093395|ref|NP_619470.1| - 1.6e-31 105.5 1.0 2.5e-06 26.8 0.0 5.0 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|20093395|ref|NP_619470.1| - 2e-30 103.1 15.9 1.2e-07 30.9 0.2 6.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|20093395|ref|NP_619470.1| - 2.2e-26 90.9 0.0 2.7e-05 23.9 0.0 4.8 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|20093395|ref|NP_619470.1| - 2.9e-26 90.9 11.5 2.9e-06 26.8 0.1 5.2 3 3 1 4 4 4 4 TPR repeat SHNi-TPR PF10516.4 gi|20093395|ref|NP_619470.1| - 3.4e-15 54.9 3.1 0.0014 17.8 0.0 5.0 5 0 0 5 5 4 4 SHNi-TPR TPR_8 PF13181.1 gi|20093395|ref|NP_619470.1| - 5.3e-15 53.9 25.8 0.00017 21.1 0.1 6.1 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|20093395|ref|NP_619470.1| - 2.2e-14 53.6 0.0 1.2e-05 25.7 0.0 4.6 5 1 0 5 5 3 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|20093395|ref|NP_619470.1| - 2.2e-13 50.1 4.6 3.4e-05 23.9 0.1 4.2 3 1 1 4 4 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|20093395|ref|NP_619470.1| - 2.4e-12 46.3 0.0 0.23 12.1 0.0 6.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|20093395|ref|NP_619470.1| - 4.3e-12 45.6 2.8 0.055 13.9 0.0 5.9 6 1 0 6 6 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|20093395|ref|NP_619470.1| - 4.5e-12 45.1 0.6 0.54 10.5 0.0 5.0 4 0 0 4 4 4 4 Tetratricopeptide repeat SNAP PF14938.1 gi|20093395|ref|NP_619470.1| - 1.2e-10 41.0 4.5 7.2e-06 25.3 0.5 2.7 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_3 PF07720.7 gi|20093395|ref|NP_619470.1| - 1.2e-10 40.9 8.7 0.035 13.9 0.1 5.0 4 0 0 4 4 4 4 Tetratricopeptide repeat Apc5 PF12862.2 gi|20093395|ref|NP_619470.1| - 1.2e-08 34.6 0.0 0.68 9.8 0.0 4.6 1 1 3 4 4 4 3 Anaphase-promoting complex subunit 5 DUF627 PF04781.7 gi|20093395|ref|NP_619470.1| - 6.4e-07 28.9 4.8 0.32 10.6 0.2 5.0 2 1 2 4 4 4 2 Protein of unknown function (DUF627) Phage_min_cap2 PF06152.6 gi|20093395|ref|NP_619470.1| - 6.7e-07 28.6 6.8 0.15 10.9 0.2 4.6 1 1 3 4 4 4 2 Phage minor capsid protein 2 TPR_19 PF14559.1 gi|20093395|ref|NP_619470.1| - 7.5e-07 29.3 4.9 0.027 14.7 0.1 4.4 4 0 0 4 4 3 2 Tetratricopeptide repeat IstB_IS21 PF01695.12 gi|20093395|ref|NP_619470.1| - 1.1e-06 28.2 0.0 2.6e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|20093395|ref|NP_619470.1| - 1.3e-05 25.3 0.4 7.3e-05 22.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain RPN7 PF10602.4 gi|20093395|ref|NP_619470.1| - 1.5e-05 24.4 2.3 1.5e-05 24.4 1.6 4.8 3 1 3 6 6 6 2 26S proteasome subunit RPN7 Rapsyn_N PF10579.4 gi|20093395|ref|NP_619470.1| - 4.4e-05 23.2 4.2 0.0091 15.7 0.1 4.2 3 1 2 5 5 5 1 Rapsyn N-terminal myristoylation and linker region NB-ARC PF00931.17 gi|20093395|ref|NP_619470.1| - 5.2e-05 22.2 0.9 0.062 12.1 0.1 2.6 1 1 1 2 2 2 2 NB-ARC domain NACHT PF05729.7 gi|20093395|ref|NP_619470.1| - 9.4e-05 22.1 0.1 0.0083 15.7 0.1 2.4 1 1 0 1 1 1 1 NACHT domain TPR_4 PF07721.9 gi|20093395|ref|NP_619470.1| - 0.00012 22.1 0.0 32 5.3 0.0 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|20093395|ref|NP_619470.1| - 0.00016 21.4 0.0 0.98 9.3 0.0 4.4 2 1 2 4 4 3 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|20093395|ref|NP_619470.1| - 0.00032 20.6 1.3 0.022 14.6 0.1 2.8 1 1 1 2 2 2 1 Tetratricopeptide repeat AAA_14 PF13173.1 gi|20093395|ref|NP_619470.1| - 0.00038 20.3 0.7 0.0012 18.7 0.5 1.9 1 0 0 1 1 1 1 AAA domain MIT PF04212.13 gi|20093395|ref|NP_619470.1| - 0.00078 19.2 17.6 2.7 7.9 0.1 6.1 4 1 1 5 5 5 1 MIT (microtubule interacting and transport) domain Enolase_C PF00113.17 gi|20093395|ref|NP_619470.1| - 0.0031 16.5 4.5 1.6 7.6 0.0 3.8 2 1 3 5 5 5 1 Enolase, C-terminal TIM barrel domain Uteroglobin PF01099.12 gi|20093395|ref|NP_619470.1| - 0.0035 17.0 10.4 21 5.0 0.0 5.8 6 0 0 6 6 4 0 Uteroglobin family TRL PF13146.1 gi|20093395|ref|NP_619470.1| - 0.0056 16.6 2.3 5.5 7.0 0.0 3.9 1 1 3 4 4 4 0 TRL-like protein family Fis1_TPR_C PF14853.1 gi|20093395|ref|NP_619470.1| - 0.0087 15.9 4.1 6.9 6.6 0.0 4.6 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat AAA_18 PF13238.1 gi|20093395|ref|NP_619470.1| - 0.009 16.3 0.3 0.009 16.3 0.2 3.5 3 1 0 3 3 2 1 AAA domain DUF258 PF03193.11 gi|20093395|ref|NP_619470.1| - 0.016 14.3 0.1 0.044 12.9 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF258 DUF2225 PF09986.4 gi|20093395|ref|NP_619470.1| - 0.063 12.7 12.9 0.095 12.1 1.2 3.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) AAA_25 PF13481.1 gi|20093395|ref|NP_619470.1| - 0.11 11.9 0.0 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain LemA PF04011.7 gi|20093395|ref|NP_619470.1| - 0.24 10.4 4.8 58 2.7 0.0 4.3 4 0 0 4 4 4 0 LemA family HMGL-like PF00682.14 gi|20093396|ref|NP_619471.1| - 2.1e-76 256.7 1.0 4.8e-76 255.5 0.7 1.6 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|20093396|ref|NP_619471.1| - 1.6e-35 121.8 1.4 1.6e-35 121.8 1.0 1.9 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain TatD_DNase PF01026.16 gi|20093397|ref|NP_619472.1| - 1.8e-64 217.4 0.0 2e-64 217.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|20093397|ref|NP_619472.1| - 1.9e-05 24.4 0.0 3.2e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.19 gi|20093397|ref|NP_619472.1| - 0.02 14.1 0.0 0.031 13.5 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Amidohydro_4 PF13147.1 gi|20093397|ref|NP_619472.1| - 0.04 13.9 0.0 1.5 8.7 0.0 2.1 1 1 0 2 2 2 0 Amidohydrolase Lactamase_B PF00753.22 gi|20093398|ref|NP_619473.1| - 7.2e-28 97.5 0.2 8.2e-28 97.3 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|20093398|ref|NP_619473.1| - 5.7e-05 22.7 0.1 0.00012 21.7 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM_N PF08497.5 gi|161484932|ref|NP_619474.2| - 8.2e-131 435.4 0.0 1.1e-130 435.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal Radical_SAM PF04055.16 gi|161484932|ref|NP_619474.2| - 1.2e-18 67.8 0.8 2.9e-17 63.3 0.2 2.7 3 0 0 3 3 3 1 Radical SAM superfamily DUF3362 PF11842.3 gi|161484932|ref|NP_619474.2| - 9.1e-16 58.1 0.1 1.7e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) B12-binding PF02310.14 gi|161484932|ref|NP_619474.2| - 2.1e-05 24.3 0.0 0.33 10.8 0.0 4.0 4 1 0 4 4 4 2 B12 binding domain DGF-1_C PF11040.3 gi|161484932|ref|NP_619474.2| - 0.027 14.3 0.0 0.072 12.9 0.0 1.7 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus EPL1 PF10513.4 gi|161484932|ref|NP_619474.2| - 0.14 12.3 0.0 2.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Enhancer of polycomb-like HTH_20 PF12840.2 gi|20093400|ref|NP_619475.1| - 0.00021 21.0 0.2 0.00035 20.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|20093400|ref|NP_619475.1| - 0.00025 20.7 0.0 0.00054 19.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1724 PF08350.5 gi|20093400|ref|NP_619475.1| - 0.00025 20.4 0.0 0.00068 19.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_34 PF13601.1 gi|20093400|ref|NP_619475.1| - 0.00086 19.2 0.0 0.0036 17.3 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|20093400|ref|NP_619475.1| - 0.0021 17.6 0.1 0.0038 16.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|20093400|ref|NP_619475.1| - 0.018 15.3 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|20093400|ref|NP_619475.1| - 0.046 13.1 0.4 0.093 12.1 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Gluconate_2-dh3 PF13618.1 gi|20093400|ref|NP_619475.1| - 0.16 12.1 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 Methyltransf_11 PF08241.7 gi|20093401|ref|NP_619476.1| - 1.2e-12 48.0 0.0 1.8e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093401|ref|NP_619476.1| - 6.9e-12 45.1 0.0 8.4e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093401|ref|NP_619476.1| - 4.3e-10 39.5 0.0 5.5e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093401|ref|NP_619476.1| - 8.3e-09 34.9 0.0 1.1e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|20093401|ref|NP_619476.1| - 7.4e-08 32.1 0.0 1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|20093401|ref|NP_619476.1| - 1.7e-07 31.7 0.0 2.5e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093401|ref|NP_619476.1| - 1.6e-06 28.5 0.0 2.3e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093401|ref|NP_619476.1| - 1.3e-05 25.4 0.0 1.9e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|20093401|ref|NP_619476.1| - 0.00022 21.2 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|20093401|ref|NP_619476.1| - 0.00027 20.3 0.0 0.00039 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|20093401|ref|NP_619476.1| - 0.00057 18.9 0.0 0.001 18.1 0.0 1.6 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|20093401|ref|NP_619476.1| - 0.0016 18.0 0.0 0.0021 17.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.11 gi|20093401|ref|NP_619476.1| - 0.0018 17.9 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein FtsJ PF01728.14 gi|20093401|ref|NP_619476.1| - 0.0096 15.9 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.10 gi|20093401|ref|NP_619476.1| - 0.032 13.3 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|20093401|ref|NP_619476.1| - 0.061 12.3 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MFS_1 PF07690.11 gi|20093402|ref|NP_619477.1| - 8.4e-49 166.1 48.5 8.4e-49 166.1 33.6 2.2 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|20093402|ref|NP_619477.1| - 9.7e-07 27.7 20.2 9.7e-07 27.7 14.0 3.3 2 1 0 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|20093402|ref|NP_619477.1| - 0.00012 21.8 4.2 0.00012 21.8 2.9 3.2 4 0 0 4 4 4 1 MFS_1 like family MFS_3 PF05977.8 gi|20093402|ref|NP_619477.1| - 0.00042 18.5 4.5 0.00042 18.5 3.1 2.3 2 0 0 2 2 2 1 Transmembrane secretion effector TrmB PF01978.14 gi|20093403|ref|NP_619478.1| - 3.8e-22 77.7 0.0 5e-22 77.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|20093403|ref|NP_619478.1| - 0.0044 16.5 0.0 0.0095 15.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|20093403|ref|NP_619478.1| - 0.031 13.9 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4438 PF14505.1 gi|20093405|ref|NP_619480.1| - 0.055 12.2 0.0 0.061 12.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) RVT_1 PF00078.22 gi|20093406|ref|NP_619481.1| - 1.3e-48 165.2 0.0 2.7e-47 160.8 0.0 2.1 2 0 0 2 2 2 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.6 gi|20093406|ref|NP_619481.1| - 2.2e-17 62.5 6.3 2.2e-17 62.5 4.4 2.0 2 0 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.1 gi|20093407|ref|NP_619482.1| - 3.2e-32 110.4 5.1 3.2e-32 110.4 3.5 1.8 2 0 0 2 2 2 1 N-terminal domain of reverse transcriptase RVT_1 PF00078.22 gi|20093407|ref|NP_619482.1| - 1e-15 57.6 0.0 2e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) FUN14 PF04930.10 gi|20093407|ref|NP_619482.1| - 0.13 12.5 0.6 0.32 11.2 0.4 1.6 1 0 0 1 1 1 0 FUN14 family Med5 PF08689.5 gi|20093408|ref|NP_619483.1| - 0.059 11.0 0.0 0.067 10.8 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit Med5 CCG PF02754.11 gi|20093409|ref|NP_619484.1| - 1.8e-35 120.8 1.6 1.5e-16 60.1 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|20093409|ref|NP_619484.1| - 1.1e-11 44.5 4.4 1.1e-11 44.5 3.1 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|20093409|ref|NP_619484.1| - 1.7e-10 41.0 2.9 1.7e-10 41.0 2.0 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|20093409|ref|NP_619484.1| - 1.4e-06 28.9 9.2 0.0028 18.3 0.7 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|20093409|ref|NP_619484.1| - 5.2e-06 26.6 14.9 0.0013 18.8 0.4 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|20093409|ref|NP_619484.1| - 1.9e-05 24.3 9.9 1.9e-05 24.3 6.9 2.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|20093409|ref|NP_619484.1| - 4.3e-05 23.7 11.3 4.3e-05 23.7 7.8 2.9 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|20093409|ref|NP_619484.1| - 0.00032 20.4 1.7 0.00032 20.4 1.2 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|20093409|ref|NP_619484.1| - 0.0004 20.7 15.1 0.0058 17.0 0.5 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|20093409|ref|NP_619484.1| - 0.00061 19.2 24.6 0.0024 17.4 2.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain UPF0004 PF00919.15 gi|20093409|ref|NP_619484.1| - 0.0043 16.8 0.1 0.68 9.7 0.0 3.0 2 1 1 3 3 3 1 Uncharacterized protein family UPF0004 Fer4_21 PF14697.1 gi|20093409|ref|NP_619484.1| - 0.0063 16.3 16.5 0.0078 16.0 0.4 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|20093409|ref|NP_619484.1| - 0.021 15.1 3.2 0.021 15.1 2.2 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Eapp_C PF10238.4 gi|20093409|ref|NP_619484.1| - 0.098 12.5 0.6 3 7.7 0.2 2.5 2 0 0 2 2 2 0 E2F-associated phosphoprotein Fer4_15 PF13459.1 gi|20093409|ref|NP_619484.1| - 0.68 10.5 9.6 7.1 7.2 1.3 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|20093409|ref|NP_619484.1| - 3.8 7.5 28.1 0.2 11.5 2.4 3.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|20093409|ref|NP_619484.1| - 8.5 6.8 16.6 0.46 10.9 0.6 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain FAD-oxidase_C PF02913.14 gi|20093410|ref|NP_619485.1| - 5.4e-56 189.6 0.0 7.1e-56 189.2 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|20093410|ref|NP_619485.1| - 1e-46 157.8 0.1 1.8e-46 157.0 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain TGT PF01702.13 gi|20093411|ref|NP_619486.1| - 3.3e-23 82.2 0.0 1.6e-22 79.9 0.0 1.9 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|20093411|ref|NP_619486.1| - 4.3e-15 55.3 0.0 1.2e-14 53.8 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|20093411|ref|NP_619486.1| - 8.2e-14 51.0 0.2 1.7e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain Acetyltransf_1 PF00583.19 gi|20093412|ref|NP_619487.1| - 2.3e-20 72.4 0.5 3.6e-20 71.7 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|20093412|ref|NP_619487.1| - 5.5e-12 45.8 0.0 7.3e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|20093412|ref|NP_619487.1| - 2.4e-11 43.6 0.4 4.1e-11 42.8 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|20093412|ref|NP_619487.1| - 5.9e-09 35.5 0.1 9e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|20093412|ref|NP_619487.1| - 1.3e-08 34.9 0.2 2.3e-08 34.1 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|20093412|ref|NP_619487.1| - 1.6e-08 34.4 0.0 5e-08 32.8 0.0 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|20093412|ref|NP_619487.1| - 1.8e-07 31.3 0.3 5.9e-07 29.7 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|20093412|ref|NP_619487.1| - 1.2e-05 25.2 0.0 3e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|20093412|ref|NP_619487.1| - 8.2e-05 22.4 0.1 0.00015 21.5 0.1 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF1999 PF09390.5 gi|20093412|ref|NP_619487.1| - 0.065 12.5 0.0 0.094 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1999) Acetyltransf_6 PF13480.1 gi|20093412|ref|NP_619487.1| - 0.08 12.8 0.1 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0058 PF01893.11 gi|20093413|ref|NP_619488.1| - 7.8e-32 109.1 1.2 8.5e-32 109.0 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Toprim_4 PF13662.1 gi|20093414|ref|NP_619489.1| - 1.2e-09 38.0 0.2 3.5e-09 36.5 0.2 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|20093414|ref|NP_619489.1| - 0.00094 19.1 0.1 0.0046 16.9 0.1 2.2 1 1 0 1 1 1 1 Toprim domain DUF3484 PF11983.3 gi|20093414|ref|NP_619489.1| - 0.47 11.3 4.5 1.6 9.6 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3484) Pyr_redox_2 PF07992.9 gi|20093415|ref|NP_619490.1| - 1.9e-30 106.2 2.7 2.6e-17 63.3 0.0 3.9 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|20093415|ref|NP_619490.1| - 7.4e-19 67.9 6.5 3.3e-15 56.2 0.1 3.8 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|20093415|ref|NP_619490.1| - 1.4e-12 47.2 3.7 0.00013 20.9 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_dim PF02852.17 gi|20093415|ref|NP_619490.1| - 1.7e-12 47.3 0.0 6.4e-12 45.4 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|20093415|ref|NP_619490.1| - 1.8e-11 43.5 1.1 0.00015 20.7 0.8 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|20093415|ref|NP_619490.1| - 5.8e-09 35.2 1.2 0.00012 21.1 0.1 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|20093415|ref|NP_619490.1| - 2.6e-08 34.1 0.0 0.00029 20.9 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|20093415|ref|NP_619490.1| - 8.9e-08 32.0 1.4 0.0014 18.6 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|20093415|ref|NP_619490.1| - 1e-06 27.5 3.6 0.028 12.9 0.1 3.6 4 0 0 4 4 4 2 HI0933-like protein Thi4 PF01946.12 gi|20093415|ref|NP_619490.1| - 3e-06 26.5 1.5 0.0058 15.7 0.0 2.8 3 0 0 3 3 3 2 Thi4 family FAD_binding_3 PF01494.14 gi|20093415|ref|NP_619490.1| - 4e-06 26.1 0.8 0.0015 17.6 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_7 PF13241.1 gi|20093415|ref|NP_619490.1| - 3.4e-05 24.0 0.1 0.26 11.5 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|20093415|ref|NP_619490.1| - 0.00032 19.8 1.0 0.15 11.1 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|20093415|ref|NP_619490.1| - 0.00051 20.1 0.6 0.033 14.2 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|20093415|ref|NP_619490.1| - 0.00078 19.4 0.3 0.65 10.0 0.0 2.4 2 0 0 2 2 2 2 TrkA-N domain Shikimate_DH PF01488.15 gi|20093415|ref|NP_619490.1| - 0.00083 19.4 0.7 0.27 11.3 0.1 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|20093415|ref|NP_619490.1| - 0.0011 17.6 0.1 0.039 12.5 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|20093415|ref|NP_619490.1| - 0.0022 16.9 0.5 0.38 9.6 0.0 2.4 2 0 0 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.1 gi|20093415|ref|NP_619490.1| - 0.0024 16.8 0.0 0.039 12.8 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) ApbA PF02558.11 gi|20093415|ref|NP_619490.1| - 0.0029 17.0 0.0 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|20093415|ref|NP_619490.1| - 0.0033 16.6 1.0 0.2 10.7 0.1 2.4 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|20093415|ref|NP_619490.1| - 0.0043 16.7 0.5 0.038 13.6 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|20093415|ref|NP_619490.1| - 0.0065 16.3 1.5 0.42 10.4 0.2 2.3 2 0 0 2 2 2 1 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|20093415|ref|NP_619490.1| - 0.011 15.5 0.2 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.16 gi|20093415|ref|NP_619490.1| - 0.014 14.9 0.1 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|20093415|ref|NP_619490.1| - 0.016 14.9 1.8 2.1 8.0 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding F420_oxidored PF03807.12 gi|20093415|ref|NP_619490.1| - 0.042 14.2 0.9 2.4 8.6 0.1 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|20093415|ref|NP_619490.1| - 0.068 13.1 0.7 1.5 8.8 0.1 2.5 2 0 0 2 2 2 0 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|20093415|ref|NP_619490.1| - 0.087 12.1 0.9 0.24 10.7 0.1 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|20093415|ref|NP_619490.1| - 0.15 10.9 1.0 0.3 10.0 0.0 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase RTC PF01137.16 gi|20093416|ref|NP_619491.1| - 1.5e-95 318.3 0.0 1.7e-95 318.1 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|20093416|ref|NP_619491.1| - 9.6e-20 70.5 0.2 2.1e-19 69.4 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PTS_2-RNA PF01885.11 gi|20093417|ref|NP_619492.1| - 1.1e-38 132.4 0.0 1.3e-38 132.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Phlebovirus_G1 PF07243.6 gi|20093417|ref|NP_619492.1| - 0.0044 15.2 0.0 0.0061 14.7 0.0 1.1 1 0 0 1 1 1 1 Phlebovirus glycoprotein G1 DUF2162 PF09930.4 gi|20093419|ref|NP_619494.1| - 3.4e-80 268.3 17.7 3.9e-80 268.1 12.3 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) PhaG_MnhG_YufB PF03334.9 gi|20093419|ref|NP_619494.1| - 0.035 14.1 0.8 0.035 14.1 0.6 4.0 1 1 3 4 4 4 0 Na+/H+ antiporter subunit MotA_ExbB PF01618.11 gi|20093420|ref|NP_619495.1| - 1.3e-12 47.5 0.2 1.8e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|20093420|ref|NP_619495.1| - 0.0036 16.8 3.9 0.0063 16.0 2.5 1.5 1 1 0 1 1 1 1 VIT family DUF3169 PF11368.3 gi|20093420|ref|NP_619495.1| - 0.69 9.0 5.7 0.57 9.3 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3169) DUF2149 PF09919.4 gi|20093421|ref|NP_619496.1| - 1.5e-34 117.9 0.1 1.8e-34 117.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) CobN-Mg_chel PF02514.11 gi|20093422|ref|NP_619497.1| - 0 1132.8 3.7 0 1132.6 2.6 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase MFS_1 PF07690.11 gi|20093423|ref|NP_619498.1| - 5.9e-20 71.2 49.9 2.8e-14 52.5 27.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|20093423|ref|NP_619498.1| - 1.5e-05 24.6 4.3 0.0006 19.5 0.2 3.6 3 0 0 3 3 3 2 MFS_1 like family tRNA_anti-codon PF01336.20 gi|20093424|ref|NP_619499.1| - 9.1e-35 118.3 14.4 6.1e-09 35.6 0.1 4.4 4 0 0 4 4 4 4 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|20093424|ref|NP_619499.1| - 1.3e-05 24.9 1.1 4.3 7.0 0.0 4.1 4 0 0 4 4 4 3 Replication factor-A C terminal domain T2SS-T3SS_pil_N PF13629.1 gi|20093424|ref|NP_619499.1| - 0.0044 16.5 4.2 10 5.7 0.0 4.1 4 0 0 4 4 4 2 Pilus formation protein N terminal region DUF3127 PF11325.3 gi|20093424|ref|NP_619499.1| - 0.0085 16.0 1.0 11 6.1 0.0 4.1 4 0 0 4 4 4 1 Domain of unknown function (DUF3127) GTP_EFTU_D2 PF03144.20 gi|20093424|ref|NP_619499.1| - 0.14 12.3 2.2 1.9 8.6 1.5 3.0 1 1 0 1 1 1 0 Elongation factor Tu domain 2 CBS PF00571.23 gi|20093426|ref|NP_619501.1| - 3e-24 84.5 3.6 5e-12 45.4 0.1 2.2 2 0 0 2 2 2 2 CBS domain CBS PF00571.23 gi|20093427|ref|NP_619502.1| - 7.1e-50 166.5 8.3 3.5e-13 49.1 0.0 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|20093428|ref|NP_619503.1| - 3.3e-54 180.4 6.5 2.5e-16 59.1 0.1 4.3 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|20093429|ref|NP_619504.1| - 1.1e-49 165.9 16.6 4.4e-12 45.5 0.3 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|20093429|ref|NP_619504.1| - 0.036 14.1 0.5 4.3 7.4 0.0 3.3 2 1 1 3 3 3 0 Ribosomal protein L9, C-terminal domain CBS PF00571.23 gi|20093430|ref|NP_619505.1| - 3.5e-45 151.5 10.6 1.1e-13 50.7 0.0 4.1 4 0 0 4 4 4 4 CBS domain AIM24 PF01987.12 gi|20093431|ref|NP_619506.1| - 3.3e-72 242.4 0.5 3.8e-72 242.2 0.4 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DNA_ligase_A_M PF01068.16 gi|20093432|ref|NP_619507.1| - 1.4e-22 80.0 0.0 3.7e-22 78.6 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|20093432|ref|NP_619507.1| - 1e-07 31.9 0.0 4.8e-07 29.7 0.0 2.0 1 1 0 1 1 1 1 RNA ligase GTP_EFTU_D4 PF14578.1 gi|20093433|ref|NP_619508.1| - 0.0037 16.8 1.4 0.015 14.9 0.4 2.4 2 1 0 2 2 2 1 Elongation factor Tu domain 4 F420_oxidored PF03807.12 gi|20093433|ref|NP_619508.1| - 0.0074 16.6 0.0 0.076 13.4 0.0 2.4 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GTP_EFTU PF00009.22 gi|20093433|ref|NP_619508.1| - 0.02 14.3 0.1 0.069 12.5 0.0 1.9 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|20093433|ref|NP_619508.1| - 0.064 13.2 0.1 0.38 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sarcoglycan_1 PF04790.8 gi|20093433|ref|NP_619508.1| - 0.08 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein AIG2 PF06094.7 gi|20093434|ref|NP_619509.1| - 1e-08 35.5 0.1 1.5e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 AIG2-like family Methyltransf_11 PF08241.7 gi|20093435|ref|NP_619510.1| - 2.5e-18 66.3 0.0 4.3e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|20093435|ref|NP_619510.1| - 6.3e-18 65.0 0.2 1.7e-17 63.5 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|20093435|ref|NP_619510.1| - 4.1e-16 58.9 0.1 1e-15 57.6 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|20093435|ref|NP_619510.1| - 1e-15 58.2 0.0 1.9e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|20093435|ref|NP_619510.1| - 8.6e-15 54.9 0.0 2.4e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|20093435|ref|NP_619510.1| - 2.2e-14 53.7 0.0 4.5e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|20093435|ref|NP_619510.1| - 2.4e-10 39.9 0.3 1.8e-09 37.1 0.2 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|20093435|ref|NP_619510.1| - 4.4e-10 39.0 0.0 8.2e-10 38.1 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|20093435|ref|NP_619510.1| - 5.1e-10 38.9 0.0 7.7e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|20093435|ref|NP_619510.1| - 5.2e-09 35.7 0.0 1.3e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|20093435|ref|NP_619510.1| - 8.6e-08 32.2 0.0 1.7e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|20093435|ref|NP_619510.1| - 1.1e-07 31.2 0.0 1.9e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|20093435|ref|NP_619510.1| - 3.1e-06 27.2 0.0 1.5e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 FtsJ-like methyltransferase TPMT PF05724.6 gi|20093435|ref|NP_619510.1| - 5.6e-06 25.9 0.0 2.8e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|20093435|ref|NP_619510.1| - 4.5e-05 22.7 0.0 7.1e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|20093435|ref|NP_619510.1| - 0.00031 20.1 0.0 0.00063 19.1 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW tRNA_U5-meth_tr PF05958.6 gi|20093435|ref|NP_619510.1| - 0.00082 18.1 0.0 0.0012 17.6 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_9 PF08003.6 gi|20093435|ref|NP_619510.1| - 0.0012 17.6 0.0 0.003 16.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) AdoMet_MTase PF07757.8 gi|20093435|ref|NP_619510.1| - 0.0012 18.9 0.0 0.0031 17.5 0.0 1.7 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Methyltransf_32 PF13679.1 gi|20093435|ref|NP_619510.1| - 0.0062 16.2 0.0 0.012 15.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|20093435|ref|NP_619510.1| - 0.0069 15.4 0.0 0.01 14.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Pox_MCEL PF03291.11 gi|20093435|ref|NP_619510.1| - 0.022 13.6 0.2 0.043 12.6 0.1 1.7 1 1 0 1 1 1 0 mRNA capping enzyme Methyltransf_24 PF13578.1 gi|20093435|ref|NP_619510.1| - 0.038 14.8 0.0 0.071 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|20093435|ref|NP_619510.1| - 0.085 12.3 0.0 0.23 10.9 0.0 1.7 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AP_endonuc_2 PF01261.19 gi|20093437|ref|NP_619512.1| - 1e-35 122.9 0.0 1.2e-35 122.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ribonuc_P_40 PF08584.6 gi|20093437|ref|NP_619512.1| - 0.018 14.0 0.0 0.026 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribonuclease P 40kDa (Rpp40) subunit HMGL-like PF00682.14 gi|20093437|ref|NP_619512.1| - 0.1 12.2 0.1 0.76 9.3 0.0 2.0 1 1 0 1 1 1 0 HMGL-like RNA_binding PF01877.12 gi|20093438|ref|NP_619513.1| - 5.9e-25 87.6 0.0 7.1e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|161484931|ref|NP_619514.2| - 6.3e-17 62.0 0.0 8.7e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|161484931|ref|NP_619514.2| - 3.5e-12 47.1 0.0 5.3e-12 46.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|161484931|ref|NP_619514.2| - 5e-06 26.4 0.0 7.9e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|161484931|ref|NP_619514.2| - 0.001 18.2 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin ADK PF00406.17 gi|161484931|ref|NP_619514.2| - 0.011 15.5 0.1 0.016 15.0 0.0 1.4 1 1 0 1 1 1 0 Adenylate kinase KTI12 PF08433.5 gi|161484931|ref|NP_619514.2| - 0.05 12.8 0.0 0.3 10.2 0.0 2.3 1 1 0 1 1 1 0 Chromatin associated protein KTI12