# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|20088900|ref|NP_614975.1| - 3.2e-23 81.5 0.4 7.6e-23 80.3 0.4 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|20088900|ref|NP_614975.1| - 2.3e-12 47.3 0.1 8.6e-12 45.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|20088900|ref|NP_614975.1| - 3.1e-09 37.5 0.7 5.8e-08 33.3 0.2 2.5 2 1 0 2 2 1 1 AAA ATPase domain AAA PF00004.29 gi|20088900|ref|NP_614975.1| - 4.6e-09 36.8 0.0 1.2e-08 35.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|20088900|ref|NP_614975.1| - 3.3e-08 33.1 0.7 2.3e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|20088900|ref|NP_614975.1| - 1.2e-06 28.6 1.1 3.8e-06 27.0 1.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea KAP_NTPase PF07693.14 gi|20088900|ref|NP_614975.1| - 4e-05 23.0 1.3 0.028 13.7 0.0 2.2 1 1 1 2 2 2 2 KAP family P-loop domain DEAD PF00270.29 gi|20088900|ref|NP_614975.1| - 0.00017 21.4 0.5 1.2 8.9 0.0 3.2 3 0 0 3 3 3 2 DEAD/DEAH box helicase NACHT PF05729.12 gi|20088900|ref|NP_614975.1| - 0.00028 20.8 0.0 0.00069 19.6 0.0 1.7 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|20088900|ref|NP_614975.1| - 0.00046 19.9 0.0 0.0011 18.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|20088900|ref|NP_614975.1| - 0.0007 18.8 0.2 0.0045 16.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|20088900|ref|NP_614975.1| - 0.0012 18.6 0.3 0.045 13.5 0.0 2.7 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|20088900|ref|NP_614975.1| - 0.0029 18.2 0.0 0.0073 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|20088900|ref|NP_614975.1| - 0.0096 15.9 0.2 0.029 14.4 0.0 1.8 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2075 PF09848.9 gi|20088900|ref|NP_614975.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|20088900|ref|NP_614975.1| - 0.012 15.5 0.8 0.1 12.4 0.8 2.1 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_7 PF12775.7 gi|20088900|ref|NP_614975.1| - 0.027 14.0 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_2 PF07724.14 gi|20088900|ref|NP_614975.1| - 0.04 14.0 0.3 0.21 11.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.12 gi|20088900|ref|NP_614975.1| - 0.068 12.4 0.7 0.19 11.0 0.0 2.0 3 0 0 3 3 3 0 Zeta toxin RNA_helicase PF00910.22 gi|20088900|ref|NP_614975.1| - 0.073 13.5 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|20088900|ref|NP_614975.1| - 0.092 12.1 0.3 0.78 9.0 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF1202 PF06717.11 gi|20088900|ref|NP_614975.1| - 0.11 11.9 0.0 0.65 9.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1202) AAA_24 PF13479.6 gi|20088900|ref|NP_614975.1| - 0.12 12.1 0.6 0.23 11.2 0.6 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|20088900|ref|NP_614975.1| - 0.13 12.6 0.1 0.3 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|20088900|ref|NP_614975.1| - 0.14 12.1 0.1 0.32 11.0 0.1 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|20088900|ref|NP_614975.1| - 0.15 12.0 0.5 0.73 9.8 0.5 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|20088900|ref|NP_614975.1| - 0.15 11.8 0.5 0.8 9.4 0.0 2.2 2 1 0 2 2 2 0 IstB-like ATP binding protein SSF PF00474.17 gi|20088902|ref|NP_614977.1| - 8.8e-104 347.6 27.5 1.2e-103 347.2 27.5 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family IstB_IS21 PF01695.17 gi|20088903|ref|NP_614978.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20088903|ref|NP_614978.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20088903|ref|NP_614978.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20088903|ref|NP_614978.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20088903|ref|NP_614978.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20088903|ref|NP_614978.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20088903|ref|NP_614978.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20088903|ref|NP_614978.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20088903|ref|NP_614978.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20088903|ref|NP_614978.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20088903|ref|NP_614978.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20088903|ref|NP_614978.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20088903|ref|NP_614978.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20088903|ref|NP_614978.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20088903|ref|NP_614978.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20088903|ref|NP_614978.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20088903|ref|NP_614978.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20088903|ref|NP_614978.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20088903|ref|NP_614978.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20088904|ref|NP_614979.1| - 3.6e-24 85.2 0.0 6.4e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20088904|ref|NP_614979.1| - 1.7e-05 24.8 0.2 3.9e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|20088904|ref|NP_614979.1| - 7.7e-05 22.4 0.6 0.00045 19.9 0.0 2.5 2 1 1 3 3 3 1 Homeodomain-like domain rve_3 PF13683.6 gi|20088904|ref|NP_614979.1| - 8.4e-05 22.3 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.6 gi|20088904|ref|NP_614979.1| - 0.00018 21.2 0.2 0.00039 20.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20088904|ref|NP_614979.1| - 0.00081 19.4 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_Tc3_1 PF11427.8 gi|20088904|ref|NP_614979.1| - 0.013 15.4 0.2 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.12 gi|20088904|ref|NP_614979.1| - 0.021 14.7 0.1 0.067 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20088904|ref|NP_614979.1| - 0.023 14.7 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|20088904|ref|NP_614979.1| - 0.024 14.2 0.1 0.064 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20088904|ref|NP_614979.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20088904|ref|NP_614979.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_28 PF13518.6 gi|20088904|ref|NP_614979.1| - 0.16 12.1 0.0 0.5 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Pyridoxal_deC PF00282.19 gi|20088905|ref|NP_614980.1| - 3.9e-32 111.4 0.0 6.2e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|20088905|ref|NP_614980.1| - 1.5e-08 34.0 0.0 3e-07 29.8 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|20088905|ref|NP_614980.1| - 6.4e-07 28.9 0.0 6.8e-06 25.5 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|20088905|ref|NP_614980.1| - 0.075 12.3 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase CBS PF00571.28 gi|20088906|ref|NP_614981.1| - 7.8e-25 87.1 4.4 1.4e-11 44.7 0.8 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|20088906|ref|NP_614981.1| - 5.7e-14 52.0 8.5 3.4e-08 33.1 0.6 3.1 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|20088906|ref|NP_614981.1| - 0.00012 21.8 2.6 0.00012 21.8 2.6 2.3 2 0 0 2 2 2 1 Peptidase M50B-like TraB PF01963.17 gi|20088907|ref|NP_614982.1| - 1.8e-31 110.0 0.0 3e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 TraB family HrpB1_HrpK PF09613.10 gi|20088907|ref|NP_614982.1| - 0.19 11.4 0.0 0.79 9.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF4405 PF14358.6 gi|20088908|ref|NP_614983.1| - 4.2e-14 52.8 12.4 5e-14 52.6 12.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|20088908|ref|NP_614983.1| - 5.7e-05 22.8 3.2 5.9e-05 22.7 3.2 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Ferric_reduct PF01794.19 gi|20088908|ref|NP_614983.1| - 0.0016 18.6 6.0 0.002 18.2 5.6 1.4 1 1 0 1 1 1 1 Ferric reductase like transmembrane component FTR_C PF02741.15 gi|20088909|ref|NP_614984.1| - 2.4e-67 225.6 3.2 4e-67 224.9 3.2 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|20088909|ref|NP_614984.1| - 1.2e-65 219.8 1.2 1.6e-65 219.4 0.2 1.7 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase GPAT_N PF14829.6 gi|20088909|ref|NP_614984.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase N-terminal CheD PF03975.13 gi|20088910|ref|NP_614985.1| - 1.7e-32 111.7 0.1 2.2e-32 111.4 0.1 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|20088911|ref|NP_614986.1| - 7.3e-11 41.8 0.4 0.00023 21.0 0.0 3.1 3 0 0 3 3 3 2 CheC-like family CheX PF13690.6 gi|20088911|ref|NP_614986.1| - 1.1e-05 25.5 0.1 0.00012 22.2 0.0 2.1 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX CheR PF01739.18 gi|20088912|ref|NP_614987.1| - 1.9e-55 187.4 0.3 3.2e-55 186.6 0.1 1.5 2 0 0 2 2 2 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|20088912|ref|NP_614987.1| - 4.8e-13 48.6 1.2 1.1e-12 47.4 0.1 2.1 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_31 PF13847.6 gi|20088912|ref|NP_614987.1| - 1.2e-05 25.1 0.0 0.086 12.6 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20088912|ref|NP_614987.1| - 1.8e-05 25.4 0.0 5.5e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20088912|ref|NP_614987.1| - 0.00048 20.8 0.1 0.067 13.9 0.0 2.8 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20088912|ref|NP_614987.1| - 0.0093 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20088912|ref|NP_614987.1| - 0.018 14.4 3.6 0.95 8.8 0.2 2.8 2 1 1 3 3 3 0 Tellurite resistance protein TehB Methyltransf_11 PF08241.12 gi|20088912|ref|NP_614987.1| - 0.052 14.2 0.1 0.89 10.3 0.1 2.7 2 1 0 2 2 2 0 Methyltransferase domain CheW PF01584.19 gi|20088913|ref|NP_614988.1| - 1.2e-25 89.7 2.0 2.5e-25 88.7 2.0 1.5 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|20088913|ref|NP_614988.1| - 7e-17 61.5 0.1 2.8e-16 59.6 0.1 2.1 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 gi|20088913|ref|NP_614988.1| - 1.3e-16 61.1 0.1 3.2e-16 59.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|20088913|ref|NP_614988.1| - 3.2e-11 43.4 3.5 3.2e-11 43.4 3.5 2.7 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|20088913|ref|NP_614988.1| - 0.0098 15.7 0.0 0.0098 15.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3660 PF12398.8 gi|20088913|ref|NP_614988.1| - 0.076 13.1 0.4 0.076 13.1 0.4 2.7 2 0 0 2 2 2 0 Receptor serine/threonine kinase Hid1 PF12722.7 gi|20088913|ref|NP_614988.1| - 9.6 4.2 13.4 13 3.7 13.4 1.2 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein CheB_methylest PF01339.17 gi|20088914|ref|NP_614989.1| - 7.5e-62 208.0 0.3 4.8e-61 205.4 0.0 2.2 3 1 0 3 3 3 1 CheB methylesterase Response_reg PF00072.24 gi|20088914|ref|NP_614989.1| - 2.5e-22 79.1 0.3 9.7e-22 77.3 0.2 2.0 2 0 0 2 2 2 1 Response regulator receiver domain QRPTase_C PF01729.19 gi|20088914|ref|NP_614989.1| - 0.018 14.9 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Peripla_BP_2 PF01497.18 gi|20088914|ref|NP_614989.1| - 0.058 12.9 0.1 0.094 12.3 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein BDHCT PF08072.11 gi|20088914|ref|NP_614989.1| - 0.084 13.0 0.2 0.37 10.9 0.0 2.1 2 0 0 2 2 2 0 BDHCT (NUC031) domain Response_reg PF00072.24 gi|20088915|ref|NP_614990.1| - 4.4e-27 94.5 2.5 5.1e-27 94.3 2.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Peptidase_M29 PF02073.15 gi|20088915|ref|NP_614990.1| - 0.078 11.7 0.0 3.5 6.3 0.0 2.0 2 0 0 2 2 2 0 Thermophilic metalloprotease (M29) Response_reg PF00072.24 gi|20088917|ref|NP_614992.1| - 5.1e-23 81.4 0.0 5.6e-23 81.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain UL45 PF05473.12 gi|20088917|ref|NP_614992.1| - 0.066 12.8 0.0 0.087 12.4 0.0 1.1 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like MCPsignal PF00015.21 gi|20088918|ref|NP_614993.1| - 5.9e-47 159.7 24.2 5.9e-47 159.7 24.2 5.1 3 1 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|20088918|ref|NP_614993.1| - 3.2e-10 40.2 4.8 1.1e-09 38.5 0.0 4.3 4 2 0 4 4 4 1 HAMP domain cwf21 PF08312.12 gi|20088918|ref|NP_614993.1| - 0.064 13.4 4.0 0.49 10.6 0.1 3.6 3 0 0 3 3 3 0 cwf21 domain DUF948 PF06103.11 gi|20088918|ref|NP_614993.1| - 0.078 13.2 34.1 0.26 11.6 1.1 6.4 4 2 3 7 7 7 0 Bacterial protein of unknown function (DUF948) Baculo_11_kDa PF06143.11 gi|20088918|ref|NP_614993.1| - 0.16 11.6 3.1 0.21 11.2 0.2 2.7 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF5113 PF17140.4 gi|20088918|ref|NP_614993.1| - 0.16 11.8 0.0 0.16 11.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5113) Atg14 PF10186.9 gi|20088918|ref|NP_614993.1| - 0.31 10.1 19.7 3.2 6.8 6.7 2.8 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 T7SS_ESX_EspC PF10824.8 gi|20088918|ref|NP_614993.1| - 0.56 10.7 0.0 0.56 10.7 0.0 5.5 5 1 0 5 5 5 0 Excreted virulence factor EspC, type VII ESX diderm DUF1319 PF07028.11 gi|20088918|ref|NP_614993.1| - 1.9 8.7 17.9 9.3 6.5 0.3 4.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1319) H-kinase_dim PF02895.14 gi|20088918|ref|NP_614993.1| - 3.9 7.9 23.0 90 3.6 0.0 7.1 4 2 0 4 4 4 0 Signal transducing histidine kinase, homodimeric domain DUF1664 PF07889.12 gi|20088918|ref|NP_614993.1| - 5.6 7.0 33.6 0.39 10.8 3.2 5.2 4 2 2 6 6 6 0 Protein of unknown function (DUF1664) CheW PF01584.19 gi|20088919|ref|NP_614994.1| - 2e-35 121.4 1.4 2.4e-35 121.2 1.4 1.1 1 0 0 1 1 1 1 CheW-like domain GntP_permease PF02447.16 gi|20088920|ref|NP_614995.1| - 2e-64 218.0 19.8 1.4e-35 122.9 0.5 2.0 2 0 0 2 2 2 2 GntP family permease DUF2852 PF11014.8 gi|20088920|ref|NP_614995.1| - 0.12 12.6 0.1 1.2 9.3 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2852) DUF1240 PF06836.12 gi|20088920|ref|NP_614995.1| - 0.32 11.5 4.1 0.63 10.6 3.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1240) Fe_dep_repr_C PF02742.15 gi|20088921|ref|NP_614996.1| - 3.6e-17 62.2 0.1 5.9e-17 61.5 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|20088921|ref|NP_614996.1| - 8.3e-13 48.3 0.0 1.3e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|20088921|ref|NP_614996.1| - 1e-06 28.5 0.0 5e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|20088921|ref|NP_614996.1| - 6.5e-05 22.8 0.1 0.00015 21.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|20088921|ref|NP_614996.1| - 0.0011 18.7 0.0 0.1 12.3 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|20088921|ref|NP_614996.1| - 0.0024 17.7 0.1 0.0059 16.5 0.0 1.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|20088921|ref|NP_614996.1| - 0.012 16.1 0.0 0.017 15.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|20088921|ref|NP_614996.1| - 0.013 15.5 0.0 0.028 14.4 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|20088921|ref|NP_614996.1| - 0.02 15.2 0.0 0.038 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 gi|20088921|ref|NP_614996.1| - 0.058 13.5 0.0 0.54 10.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|20088921|ref|NP_614996.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain ZnuA PF01297.17 gi|20088922|ref|NP_614997.1| - 6.1e-67 225.7 0.7 7.3e-67 225.5 0.7 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic FtsH_ext PF06480.15 gi|20088922|ref|NP_614997.1| - 0.0089 16.4 0.0 0.13 12.7 0.0 2.3 2 0 0 2 2 2 1 FtsH Extracellular Aminotran_MocR PF12897.7 gi|20088922|ref|NP_614997.1| - 0.013 14.3 0.0 0.023 13.5 0.0 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase DUF2457 PF10446.9 gi|20088922|ref|NP_614997.1| - 0.37 9.9 12.9 0.54 9.3 12.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) SDA1 PF05285.12 gi|20088922|ref|NP_614997.1| - 7.1 5.9 13.7 9.4 5.5 13.7 1.2 1 0 0 1 1 1 0 SDA1 ABC_tran PF00005.27 gi|20088923|ref|NP_614998.1| - 5.3e-28 98.2 0.0 7.2e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20088923|ref|NP_614998.1| - 2.7e-16 60.2 1.5 1.5e-09 38.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20088923|ref|NP_614998.1| - 9.6e-07 28.5 0.1 4.1e-06 26.4 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20088923|ref|NP_614998.1| - 4.5e-05 23.3 0.3 0.062 13.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|20088923|ref|NP_614998.1| - 0.0023 18.4 0.5 0.0041 17.6 0.1 1.5 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|20088923|ref|NP_614998.1| - 0.0047 17.1 0.0 0.18 12.1 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|20088923|ref|NP_614998.1| - 0.0067 16.8 0.3 0.093 13.2 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|20088923|ref|NP_614998.1| - 0.034 14.4 0.2 0.1 12.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20088923|ref|NP_614998.1| - 0.11 12.7 0.1 3.7 7.7 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|20088923|ref|NP_614998.1| - 0.12 12.1 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Pox_A32 PF04665.12 gi|20088923|ref|NP_614998.1| - 0.17 11.4 0.5 0.47 9.9 0.1 1.8 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_30 PF13604.6 gi|20088923|ref|NP_614998.1| - 0.18 11.5 0.0 0.57 9.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC-3 PF00950.17 gi|20088924|ref|NP_614999.1| - 1e-81 274.2 27.9 1.3e-81 273.9 27.9 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|20088924|ref|NP_614999.1| - 2.1e-07 30.3 24.0 9e-07 28.2 24.0 1.9 1 1 0 1 1 1 1 FecCD transport family DUF3332 PF11810.8 gi|20088924|ref|NP_614999.1| - 5.8 6.5 5.6 0.7 9.5 1.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3332) MULE PF10551.9 gi|20088926|ref|NP_615001.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20088926|ref|NP_615001.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20088926|ref|NP_615001.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20088926|ref|NP_615001.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20088926|ref|NP_615001.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20088926|ref|NP_615001.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20088926|ref|NP_615001.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20088926|ref|NP_615001.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20088926|ref|NP_615001.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20088926|ref|NP_615001.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20088926|ref|NP_615001.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger DUF11 PF01345.18 gi|20088928|ref|NP_615003.1| - 7.6e-14 51.8 0.0 4.1e-06 27.0 0.2 2.7 2 1 0 2 2 2 2 Domain of unknown function DUF11 PGF-CTERM PF18204.1 gi|20088928|ref|NP_615003.1| - 1.6e-07 31.0 1.1 2.6e-07 30.4 1.1 1.3 1 0 0 1 1 1 1 PGF-CTERM motif Methyltransf_31 PF13847.6 gi|20088929|ref|NP_615004.1| - 2.9e-16 59.6 0.0 4.1e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20088929|ref|NP_615004.1| - 6.7e-16 58.8 0.0 6.1e-15 55.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20088929|ref|NP_615004.1| - 2.6e-14 53.7 0.0 4.5e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20088929|ref|NP_615004.1| - 1.6e-13 50.8 0.0 3e-13 50.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20088929|ref|NP_615004.1| - 2e-13 50.8 0.0 3.9e-06 27.4 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain MTS PF05175.14 gi|20088929|ref|NP_615004.1| - 1e-06 28.4 0.0 1.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CheR PF01739.18 gi|20088929|ref|NP_615004.1| - 3.1e-06 26.8 0.0 0.00033 20.2 0.0 2.7 2 1 0 2 2 2 1 CheR methyltransferase, SAM binding domain Ubie_methyltran PF01209.18 gi|20088929|ref|NP_615004.1| - 1.6e-05 24.3 0.0 0.051 12.9 0.0 2.4 3 0 0 3 3 3 2 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|20088929|ref|NP_615004.1| - 6e-05 22.2 0.0 9.4e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|20088929|ref|NP_615004.1| - 0.00017 21.6 0.0 0.00032 20.7 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|20088929|ref|NP_615004.1| - 0.00018 22.5 0.0 0.00071 20.6 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|20088929|ref|NP_615004.1| - 0.00026 20.3 0.0 0.0047 16.2 0.0 2.4 2 2 0 2 2 2 1 O-methyltransferase domain Methyltransf_16 PF10294.9 gi|20088929|ref|NP_615004.1| - 0.00038 20.2 0.0 0.00065 19.5 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase PCMT PF01135.19 gi|20088929|ref|NP_615004.1| - 0.0048 16.7 0.0 0.0081 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.17 gi|20088929|ref|NP_615004.1| - 0.006 15.8 0.1 0.074 12.2 0.0 2.0 2 0 0 2 2 2 1 O-methyltransferase FtsJ PF01728.19 gi|20088929|ref|NP_615004.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase TPP_enzyme_C PF02775.21 gi|20088930|ref|NP_615005.1| - 3.7e-26 91.7 0.1 5.3e-26 91.2 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|20088931|ref|NP_615006.1| - 8.1e-70 235.2 0.2 1.1e-69 234.7 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|20088931|ref|NP_615006.1| - 3.2e-33 114.1 0.1 7.8e-33 112.8 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|20088931|ref|NP_615006.1| - 2e-06 27.7 0.1 4.5e-06 26.6 0.1 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|20088932|ref|NP_615007.1| - 1.5e-13 49.9 17.8 5.3e-08 32.3 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20088932|ref|NP_615007.1| - 6.1e-11 41.9 12.9 9.2e-06 25.5 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20088932|ref|NP_615007.1| - 4.1e-10 39.1 11.1 9.5e-05 22.3 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20088932|ref|NP_615007.1| - 4e-09 36.5 5.6 0.00064 19.8 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20088932|ref|NP_615007.1| - 4.1e-09 36.4 21.4 2.2e-07 30.9 11.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20088932|ref|NP_615007.1| - 4.3e-09 36.8 35.7 1.3e-05 25.7 13.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20088932|ref|NP_615007.1| - 4.1e-08 33.3 21.4 1.9e-06 27.9 11.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20088932|ref|NP_615007.1| - 5.2e-07 30.5 11.2 0.0019 19.1 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|20088932|ref|NP_615007.1| - 2.4e-05 24.8 7.4 0.04 14.5 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20088932|ref|NP_615007.1| - 0.00015 22.2 12.8 0.035 14.6 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20088932|ref|NP_615007.1| - 0.0008 19.7 15.9 0.012 16.1 1.9 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20088932|ref|NP_615007.1| - 0.044 14.6 13.3 0.24 12.2 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20088932|ref|NP_615007.1| - 0.16 12.7 11.1 1.9 9.3 3.6 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|20088932|ref|NP_615007.1| - 0.25 11.9 15.7 0.29 11.7 3.5 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20088932|ref|NP_615007.1| - 5.4 8.2 17.9 14 6.9 4.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|20088933|ref|NP_615008.1| - 1.2e-41 142.7 0.5 1.5e-41 142.4 0.5 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Dus PF01207.17 gi|20088934|ref|NP_615009.1| - 3.9e-82 275.8 0.0 4.6e-82 275.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|20088934|ref|NP_615009.1| - 5.9e-05 22.6 0.0 0.00014 21.4 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Oxidored_FMN PF00724.20 gi|20088934|ref|NP_615009.1| - 0.0014 18.0 0.0 0.0027 17.0 0.0 1.5 1 1 1 2 2 2 1 NADH:flavin oxidoreductase / NADH oxidase family SOR_SNZ PF01680.17 gi|20088934|ref|NP_615009.1| - 0.037 13.8 0.3 0.89 9.3 0.1 2.3 1 1 1 2 2 2 0 SOR/SNZ family ThiG PF05690.14 gi|20088934|ref|NP_615009.1| - 0.048 13.0 0.6 0.12 11.6 0.4 1.7 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|20088934|ref|NP_615009.1| - 0.075 12.2 0.0 0.58 9.3 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|20088934|ref|NP_615009.1| - 0.11 11.8 0.2 0.18 11.1 0.2 1.5 1 1 0 1 1 1 0 Nitronate monooxygenase Peptidase_S24 PF00717.23 gi|20088935|ref|NP_615010.1| - 0.00033 20.6 0.1 0.00056 19.8 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|20088936|ref|NP_615011.1| - 5.7e-16 58.5 0.0 1.2e-15 57.4 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|20088936|ref|NP_615011.1| - 1.5e-12 48.4 0.1 3.5e-12 47.3 0.1 1.6 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20088936|ref|NP_615011.1| - 2.7e-09 37.4 0.1 7.1e-09 36.1 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|20088936|ref|NP_615011.1| - 6.1e-05 22.9 0.0 0.00016 21.6 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TT1725 PF18324.1 gi|20088937|ref|NP_615012.1| - 0.057 13.5 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein TT1725 DUF2099 PF09872.9 gi|20088938|ref|NP_615013.1| - 1.7e-110 368.2 3.9 2e-110 368.0 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) UBA_4 PF14555.6 gi|20088938|ref|NP_615013.1| - 0.22 11.3 0.3 0.72 9.7 0.0 1.9 2 0 0 2 2 2 0 UBA-like domain Wyosine_form PF08608.12 gi|20088939|ref|NP_615014.1| - 1.8e-23 82.6 0.0 3e-23 81.9 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|20088939|ref|NP_615014.1| - 2.2e-21 77.0 0.2 7.9e-20 71.9 0.1 2.5 2 1 0 2 2 2 1 Radical SAM superfamily eRF1_2 PF03464.15 gi|20088941|ref|NP_615016.1| - 4.8e-42 143.4 0.0 8.2e-42 142.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|20088941|ref|NP_615016.1| - 1.5e-31 109.2 0.0 7.5e-31 107.0 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|20088941|ref|NP_615016.1| - 7.7e-14 51.8 0.0 1.4e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|20088941|ref|NP_615016.1| - 1.6e-10 41.3 0.0 3.6e-10 40.2 0.0 1.6 1 1 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|20088941|ref|NP_615016.1| - 2.5e-10 40.8 0.0 4.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 HypA PF01155.19 gi|20088941|ref|NP_615016.1| - 0.015 15.3 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|20088941|ref|NP_615016.1| - 0.042 14.0 1.9 0.31 11.2 0.3 2.5 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|20088941|ref|NP_615016.1| - 0.067 13.1 1.4 12 5.9 0.1 2.8 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|20088941|ref|NP_615016.1| - 0.11 11.9 2.8 0.55 9.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|20088941|ref|NP_615016.1| - 0.28 11.0 3.9 5.2 6.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20088941|ref|NP_615016.1| - 3.8 7.6 5.0 1.6 8.8 1.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|20088941|ref|NP_615016.1| - 4.2 7.4 5.5 6.1 6.8 3.3 2.2 2 1 1 3 3 3 0 Putative transposase DNA-binding domain tRNA-synt_1d PF00750.19 gi|20088942|ref|NP_615017.1| - 1e-38 133.2 0.2 1.4e-38 132.8 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|20088942|ref|NP_615017.1| - 1.3e-32 112.5 0.0 4.1e-32 110.8 0.0 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|20088942|ref|NP_615017.1| - 2.9e-14 53.4 0.1 1e-13 51.7 0.1 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|20088942|ref|NP_615017.1| - 5.2e-07 28.9 0.0 0.018 14.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|20088942|ref|NP_615017.1| - 1.4e-06 27.4 0.0 0.0011 17.9 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|20088942|ref|NP_615017.1| - 4.3e-05 23.0 0.1 8.7e-05 22.0 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|20088942|ref|NP_615017.1| - 0.0061 14.9 0.0 0.0096 14.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Phage_int_SAM_4 PF13495.6 gi|20088944|ref|NP_615019.1| - 0.038 14.4 0.0 0.069 13.6 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 gi|20088945|ref|NP_615020.1| - 0.0015 18.7 0.9 0.0055 16.9 0.1 2.4 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain HBD PF18534.1 gi|20088946|ref|NP_615021.1| - 0.0064 16.6 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Helical bundle domain Phage_int_SAM_5 PF13102.6 gi|20088946|ref|NP_615021.1| - 0.0067 16.7 1.0 0.19 12.1 1.0 2.4 1 1 0 1 1 1 1 Phage integrase SAM-like domain VAPB_antitox PF02697.14 gi|20088947|ref|NP_615022.1| - 0.0033 18.2 7.6 0.0058 17.4 7.6 1.5 1 1 0 1 1 1 1 Putative antitoxin DUF5446 PF17522.2 gi|20088947|ref|NP_615022.1| - 0.042 14.0 1.4 0.042 14.0 1.4 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5446) GrpE PF01025.19 gi|20088947|ref|NP_615022.1| - 0.053 13.2 5.0 0.059 13.0 5.0 1.1 1 0 0 1 1 1 0 GrpE ZnuA PF01297.17 gi|20088947|ref|NP_615022.1| - 0.15 11.5 3.2 0.17 11.3 3.2 1.0 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic RRF PF01765.19 gi|20088947|ref|NP_615022.1| - 0.16 11.9 6.1 0.2 11.6 6.1 1.1 1 0 0 1 1 1 0 Ribosome recycling factor DUF2570 PF10828.8 gi|20088947|ref|NP_615022.1| - 0.25 11.2 3.0 0.19 11.6 1.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) DUF4635 PF15466.6 gi|20088947|ref|NP_615022.1| - 0.55 9.8 5.2 0.37 10.3 3.2 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) RAP80_UIM PF18282.1 gi|20088947|ref|NP_615022.1| - 0.84 9.5 5.0 0.6 9.9 3.1 1.7 1 1 1 2 2 2 0 RAP80 N-terminal ubiquitin interaction motif ParE_toxin PF05016.15 gi|20088948|ref|NP_615023.1| - 6.6e-11 42.7 0.4 7.8e-11 42.4 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ATPase_2 PF01637.18 gi|20088949|ref|NP_615024.1| - 8e-27 94.7 0.0 2.6e-26 93.0 0.0 2.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|20088949|ref|NP_615024.1| - 1.2e-25 89.8 0.8 1.2e-25 89.8 0.8 2.0 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|20088949|ref|NP_615024.1| - 9e-10 38.7 0.0 2.1e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20088949|ref|NP_615024.1| - 2e-05 25.0 0.0 4.1e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|20088949|ref|NP_615024.1| - 5.5e-05 22.9 0.1 0.00019 21.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|20088949|ref|NP_615024.1| - 0.0064 16.5 0.1 0.02 14.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix TniB PF05621.11 gi|20088949|ref|NP_615024.1| - 0.009 15.4 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein AAA_18 PF13238.6 gi|20088949|ref|NP_615024.1| - 0.023 15.3 0.0 0.084 13.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|20088949|ref|NP_615024.1| - 0.026 14.8 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_IclR PF09339.10 gi|20088949|ref|NP_615024.1| - 0.038 13.8 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Asn_synthase PF00733.21 gi|20088950|ref|NP_615025.1| - 1.7e-15 57.6 0.0 2.7e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|20088950|ref|NP_615025.1| - 1.9e-05 24.6 0.0 5.7e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain QueC PF06508.13 gi|20088950|ref|NP_615025.1| - 0.0019 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF3700 PF12481.8 gi|20088950|ref|NP_615025.1| - 0.004 16.6 0.0 0.0071 15.8 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein GATase_6 PF13522.6 gi|20088950|ref|NP_615025.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Glutamine amidotransferase domain Latarcin PF10279.9 gi|20088954|ref|NP_615029.1| - 0.0045 17.4 0.2 0.0052 17.2 0.2 1.1 1 0 0 1 1 1 1 Latarcin precursor RHH_1 PF01402.21 gi|20088954|ref|NP_615029.1| - 0.005 16.7 0.0 0.0086 16.0 0.0 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family BLOC1_2 PF10046.9 gi|20088954|ref|NP_615029.1| - 0.12 12.7 0.0 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TRAM PF01938.20 gi|20088955|ref|NP_615030.1| - 3.6e-17 62.1 0.7 4.1e-17 61.9 0.7 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|20088955|ref|NP_615030.1| - 0.12 12.1 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) TRAM PF01938.20 gi|20088956|ref|NP_615031.1| - 6.3e-17 61.3 1.2 7.1e-17 61.2 1.2 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|20088956|ref|NP_615031.1| - 0.12 12.2 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) TRAM PF01938.20 gi|20088957|ref|NP_615032.1| - 1.4e-16 60.2 1.3 1.6e-16 60.0 1.3 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|20088957|ref|NP_615032.1| - 0.054 13.2 0.1 0.098 12.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) S1 PF00575.23 gi|20088957|ref|NP_615032.1| - 0.48 10.8 4.7 8.6 6.8 0.4 2.3 1 1 1 2 2 2 0 S1 RNA binding domain TRAM PF01938.20 gi|20088958|ref|NP_615033.1| - 6.9e-17 61.2 0.8 7.8e-17 61.0 0.8 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|20088958|ref|NP_615033.1| - 0.058 13.1 0.1 0.098 12.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) S1 PF00575.23 gi|20088958|ref|NP_615033.1| - 0.31 11.4 4.0 8.2 6.9 0.3 2.2 1 1 1 2 2 2 0 S1 RNA binding domain DUF1670 PF07900.11 gi|20088959|ref|NP_615034.1| - 7.1e-99 329.6 4.1 8.3e-99 329.4 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20088959|ref|NP_615034.1| - 1.6e-05 24.5 0.0 0.16 11.8 0.0 4.0 3 1 1 4 4 4 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20088959|ref|NP_615034.1| - 9.1e-05 22.1 0.6 2.9 7.6 0.1 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_17 PF12728.7 gi|20088959|ref|NP_615034.1| - 0.00043 20.4 0.1 0.92 9.7 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|20088959|ref|NP_615034.1| - 0.0007 19.4 0.3 0.073 13.0 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|20088959|ref|NP_615034.1| - 0.0007 19.1 0.0 10 5.8 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|20088959|ref|NP_615034.1| - 0.001 19.0 0.2 0.21 11.6 0.0 3.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20088959|ref|NP_615034.1| - 0.0017 18.2 0.3 0.017 15.0 0.2 2.5 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|20088959|ref|NP_615034.1| - 0.0058 16.6 0.1 7.8 6.6 0.0 3.1 2 1 1 3 3 3 1 Winged helix-turn helix Phage_terminase PF10668.9 gi|20088959|ref|NP_615034.1| - 0.0071 16.3 0.3 2.6 8.1 0.1 2.5 2 0 0 2 2 2 1 Phage terminase small subunit HTH_11 PF08279.12 gi|20088959|ref|NP_615034.1| - 0.0097 15.8 0.4 5.7 7.0 0.1 2.9 3 0 0 3 3 3 1 HTH domain Fe_dep_repress PF01325.19 gi|20088959|ref|NP_615034.1| - 0.018 15.2 0.9 7.1 6.9 0.3 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|20088959|ref|NP_615034.1| - 0.056 13.0 0.3 2.5 7.7 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 GerE PF00196.19 gi|20088959|ref|NP_615034.1| - 0.085 12.4 0.1 10 5.7 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_Tnp_4 PF13613.6 gi|20088959|ref|NP_615034.1| - 0.12 12.1 0.0 0.34 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1670 PF07900.11 gi|20088960|ref|NP_615035.1| - 9.3e-88 293.3 0.2 1.2e-87 292.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20088960|ref|NP_615035.1| - 4.7e-06 26.5 0.1 0.00094 19.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|20088960|ref|NP_615035.1| - 0.0015 18.6 0.1 0.21 11.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20088960|ref|NP_615035.1| - 0.0016 18.0 0.1 0.0089 15.6 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|20088960|ref|NP_615035.1| - 0.0024 17.6 0.0 7.3 6.5 0.0 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|20088960|ref|NP_615035.1| - 0.0034 17.3 0.8 0.01 15.8 0.1 2.1 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|20088960|ref|NP_615035.1| - 0.0041 17.1 0.1 1 9.4 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|20088960|ref|NP_615035.1| - 0.012 15.6 0.1 0.027 14.4 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20088960|ref|NP_615035.1| - 0.017 15.0 0.4 2.2 8.2 0.1 3.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|20088960|ref|NP_615035.1| - 0.027 14.2 0.7 0.11 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20088960|ref|NP_615035.1| - 0.059 13.0 1.4 12 5.7 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.22 gi|20088960|ref|NP_615035.1| - 0.069 13.1 0.2 0.22 11.5 0.1 1.8 2 0 0 2 2 2 0 MarR family TENA_THI-4 PF03070.16 gi|20088960|ref|NP_615035.1| - 0.078 12.8 0.2 2.3 8.0 0.0 2.6 3 0 0 3 3 3 0 TENA/THI-4/PQQC family HTH_20 PF12840.7 gi|20088960|ref|NP_615035.1| - 0.084 13.0 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20088960|ref|NP_615035.1| - 0.11 12.4 0.0 4.8 7.2 0.0 2.4 2 0 0 2 2 2 0 MarR family Bactofilin PF04519.13 gi|20088961|ref|NP_615036.1| - 0.00017 21.8 1.8 0.019 15.3 0.2 2.2 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Phage_spike PF18715.1 gi|20088961|ref|NP_615036.1| - 0.015 15.3 0.3 0.87 9.7 0.0 2.6 2 1 0 2 2 2 0 Phage spike trimer Hexapep PF00132.24 gi|20088961|ref|NP_615036.1| - 0.016 14.9 0.1 0.6 9.9 0.1 2.9 2 1 1 3 3 3 0 Bacterial transferase hexapeptide (six repeats) ABC_tran PF00005.27 gi|20088962|ref|NP_615037.1| - 1.8e-32 112.7 0.0 2.8e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20088962|ref|NP_615037.1| - 1.3e-08 35.1 0.2 0.0012 18.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|20088962|ref|NP_615037.1| - 8.3e-06 26.3 0.6 7.6e-05 23.2 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|20088962|ref|NP_615037.1| - 0.00053 20.3 0.2 0.0028 17.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|20088962|ref|NP_615037.1| - 0.00089 19.0 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|20088962|ref|NP_615037.1| - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|20088962|ref|NP_615037.1| - 0.0011 18.9 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|20088962|ref|NP_615037.1| - 0.0015 18.9 0.2 0.0043 17.5 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|20088962|ref|NP_615037.1| - 0.0022 18.2 0.0 0.0081 16.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|20088962|ref|NP_615037.1| - 0.0071 16.6 0.0 0.036 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|20088962|ref|NP_615037.1| - 0.0081 16.1 0.0 0.26 11.2 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|20088962|ref|NP_615037.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|20088962|ref|NP_615037.1| - 0.015 15.3 0.4 0.084 12.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|20088962|ref|NP_615037.1| - 0.021 15.3 0.1 0.077 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|20088962|ref|NP_615037.1| - 0.023 15.2 0.2 0.04 14.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20088962|ref|NP_615037.1| - 0.028 14.3 0.4 0.093 12.6 0.1 2.0 2 1 0 2 2 2 0 NACHT domain SMC_N PF02463.19 gi|20088962|ref|NP_615037.1| - 0.03 13.8 0.0 2.5 7.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|20088962|ref|NP_615037.1| - 0.036 14.0 0.6 3.7 7.4 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|20088962|ref|NP_615037.1| - 0.075 12.6 0.1 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|20088962|ref|NP_615037.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|20088962|ref|NP_615037.1| - 0.15 11.5 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein BPD_transp_1 PF00528.22 gi|20088963|ref|NP_615038.1| - 6.4e-22 78.2 13.9 6.4e-22 78.2 13.9 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|20088964|ref|NP_615039.1| - 3.9e-36 125.1 0.1 6e-36 124.4 0.1 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|20088964|ref|NP_615039.1| - 1.5e-20 74.0 0.0 2e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|20088964|ref|NP_615039.1| - 1.3e-06 28.2 0.0 2.1e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|20088964|ref|NP_615039.1| - 9.7e-05 21.9 0.0 0.00083 18.9 0.0 2.2 1 1 1 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 gi|20088964|ref|NP_615039.1| - 0.0019 17.7 0.0 0.0056 16.1 0.0 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.20 gi|20088964|ref|NP_615039.1| - 0.019 14.4 0.0 0.035 13.5 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain HTH_3 PF01381.22 gi|20088966|ref|NP_615041.1| - 2e-08 34.2 0.0 5.4e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|20088966|ref|NP_615041.1| - 0.00074 19.5 0.1 0.0032 17.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain PrpR_N PF06506.11 gi|20088966|ref|NP_615041.1| - 0.0042 16.7 1.2 0.0074 15.9 1.2 1.4 1 0 0 1 1 1 1 Propionate catabolism activator CENP-B_N PF04218.13 gi|20088966|ref|NP_615041.1| - 0.05 13.2 2.8 0.61 9.8 0.0 3.3 4 0 0 4 4 4 0 CENP-B N-terminal DNA-binding domain HTH_31 PF13560.6 gi|20088966|ref|NP_615041.1| - 0.073 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|20088966|ref|NP_615041.1| - 0.11 13.0 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain S-layer PF07752.11 gi|20088967|ref|NP_615042.1| - 2.5e-189 626.5 43.7 7.6e-95 316.8 14.9 2.7 2 0 0 2 2 2 2 S-layer protein DUF4198 PF10670.9 gi|20088967|ref|NP_615042.1| - 8.9e-08 32.8 8.9 0.0021 18.4 0.2 5.0 5 0 0 5 5 5 2 Domain of unknown function (DUF4198) CarbopepD_reg_2 PF13715.6 gi|20088967|ref|NP_615042.1| - 7.9e-06 25.8 9.4 0.032 14.2 0.1 4.5 4 0 0 4 4 4 2 CarboxypepD_reg-like domain SH3_16 PF18348.1 gi|20088967|ref|NP_615042.1| - 0.00014 21.6 2.8 0.2 11.4 0.1 2.7 2 0 0 2 2 2 2 Bacterial dipeptidyl-peptidase Sh3 domain CarboxypepD_reg PF13620.6 gi|20088967|ref|NP_615042.1| - 0.0011 19.1 30.7 0.0056 16.9 1.0 6.5 7 1 0 7 7 7 2 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|20088967|ref|NP_615042.1| - 0.0035 17.2 13.8 0.32 10.9 0.2 5.1 5 0 0 5 5 5 2 PEGA domain Cupredoxin_1 PF13473.6 gi|20088967|ref|NP_615042.1| - 0.0056 16.8 5.0 3.6 7.8 0.1 4.3 3 1 1 4 4 4 3 Cupredoxin-like domain tRNA-synt_1c_C PF03950.18 gi|20088967|ref|NP_615042.1| - 0.028 14.3 2.7 1.5 8.6 0.1 3.4 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), anti-codon binding domain PapC_N PF13954.6 gi|20088967|ref|NP_615042.1| - 0.07 13.1 0.0 0.35 10.9 0.0 2.2 1 0 0 1 1 1 0 PapC N-terminal domain YtkA PF13115.6 gi|20088967|ref|NP_615042.1| - 0.13 12.9 12.5 0.29 11.8 0.2 4.6 4 1 0 4 4 4 0 YtkA-like Y_Y_Y PF07495.13 gi|20088967|ref|NP_615042.1| - 0.69 9.9 10.0 2.3 8.2 0.6 4.9 5 0 0 5 5 5 0 Y_Y_Y domain TTR-52 PF01060.23 gi|20088967|ref|NP_615042.1| - 1.2 9.9 6.7 0.35 11.6 0.3 3.5 4 0 0 4 4 4 0 Transthyretin-like family EMP24_GP25L PF01105.24 gi|20088967|ref|NP_615042.1| - 9.7 6.1 13.6 6.5 6.7 0.1 4.5 4 1 1 5 5 5 0 emp24/gp25L/p24 family/GOLD AIRS PF00586.24 gi|20088968|ref|NP_615043.1| - 3e-21 75.9 0.9 5.7e-21 75.0 0.9 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|20088968|ref|NP_615043.1| - 7.4e-10 39.2 0.0 1.3e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain GoLoco PF02188.17 gi|20088969|ref|NP_615044.1| - 0.17 11.4 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 GoLoco motif Radical_SAM PF04055.21 gi|20088970|ref|NP_615045.1| - 6.8e-16 59.1 0.0 9.4e-16 58.6 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20088970|ref|NP_615045.1| - 1.1e-08 35.4 0.0 2.1e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20088970|ref|NP_615045.1| - 5.5e-05 23.3 0.0 0.00012 22.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain NRDD PF13597.6 gi|20088971|ref|NP_615046.1| - 3.5e-158 527.9 0.1 4.4e-158 527.6 0.1 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Rad51 PF08423.11 gi|20088973|ref|NP_615048.1| - 2.2e-33 115.6 0.1 2.7e-33 115.3 0.1 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|20088973|ref|NP_615048.1| - 1.3e-13 50.8 0.3 7e-12 45.2 0.3 2.1 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|20088973|ref|NP_615048.1| - 1.2e-10 41.3 0.1 1.5e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|20088973|ref|NP_615048.1| - 1.2e-08 34.8 0.0 2.7e-08 33.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|20088973|ref|NP_615048.1| - 3e-06 27.0 0.0 3.9e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|20088973|ref|NP_615048.1| - 4.3e-05 23.3 0.0 6.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|20088973|ref|NP_615048.1| - 7.3e-05 21.9 0.2 0.0012 17.8 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|20088973|ref|NP_615048.1| - 0.00023 21.0 0.0 0.00045 20.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein SRP54 PF00448.22 gi|20088973|ref|NP_615048.1| - 0.00052 19.7 0.0 0.00078 19.1 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|20088973|ref|NP_615048.1| - 0.0011 18.4 0.2 0.002 17.6 0.2 1.3 1 0 0 1 1 1 1 PhoH-like protein CbiA PF01656.23 gi|20088973|ref|NP_615048.1| - 0.0015 18.6 0.0 0.0025 17.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.9 gi|20088973|ref|NP_615048.1| - 0.0085 15.4 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|20088973|ref|NP_615048.1| - 0.011 15.1 0.0 0.035 13.4 0.0 1.5 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_31 PF13614.6 gi|20088973|ref|NP_615048.1| - 0.012 15.5 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|20088973|ref|NP_615048.1| - 0.014 14.5 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) UvrD-helicase PF00580.21 gi|20088973|ref|NP_615048.1| - 0.029 13.9 0.1 0.043 13.3 0.1 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain CLP1_P PF16575.5 gi|20088973|ref|NP_615048.1| - 0.066 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA PF00004.29 gi|20088973|ref|NP_615048.1| - 0.11 13.0 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|20088973|ref|NP_615048.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.6 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|20088973|ref|NP_615048.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|20088973|ref|NP_615048.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein Inos-1-P_synth PF01658.17 gi|20088974|ref|NP_615049.1| - 2e-32 111.7 0.0 3.3e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF1611_N PF17396.2 gi|20088974|ref|NP_615049.1| - 0.035 14.3 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain NAD_binding_5 PF07994.12 gi|20088974|ref|NP_615049.1| - 0.083 12.3 0.0 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase IF-2B PF01008.17 gi|20088975|ref|NP_615050.1| - 8e-80 268.0 0.0 9.7e-80 267.8 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Peroxin-22 PF12827.7 gi|20088975|ref|NP_615050.1| - 0.0018 18.2 0.0 0.04 13.8 0.0 2.3 2 0 0 2 2 2 1 Peroxisomal biogenesis protein family AXE1 PF05448.12 gi|20088976|ref|NP_615051.1| - 5e-10 38.6 0.0 2.5e-09 36.3 0.0 1.9 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|20088976|ref|NP_615051.1| - 3.6e-06 26.6 0.0 0.00013 21.5 0.0 2.1 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|20088976|ref|NP_615051.1| - 0.0003 20.4 0.0 0.00058 19.5 0.0 1.4 2 0 0 2 2 2 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|20088976|ref|NP_615051.1| - 0.00068 19.0 0.0 0.002 17.4 0.0 1.5 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 gi|20088976|ref|NP_615051.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|20088976|ref|NP_615051.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal UBM PF14377.6 gi|20088976|ref|NP_615051.1| - 0.17 11.4 1.2 0.51 9.9 0.1 2.4 3 0 0 3 3 3 0 Ubiquitin binding region Abhydrolase_1 PF00561.20 gi|20088976|ref|NP_615051.1| - 0.19 11.4 0.0 0.84 9.2 0.0 1.8 1 1 0 1 1 1 0 alpha/beta hydrolase fold ATPase_2 PF01637.18 gi|20088977|ref|NP_615052.1| - 6e-09 36.2 1.8 1e-08 35.4 1.8 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA-ATPase_like PF09820.9 gi|20088977|ref|NP_615052.1| - 6.5e-05 22.5 0.5 0.00015 21.3 0.5 1.5 1 0 0 1 1 1 1 Predicted AAA-ATPase AAA_16 PF13191.6 gi|20088977|ref|NP_615052.1| - 8.1e-05 23.1 0.0 0.00022 21.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|20088977|ref|NP_615052.1| - 0.0025 17.8 0.6 0.14 12.2 0.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_35 PF14516.6 gi|20088977|ref|NP_615052.1| - 0.074 11.9 0.0 0.19 10.6 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain TPR_1 PF00515.28 gi|20088978|ref|NP_615053.1| - 4.1e-16 58.0 4.6 0.0004 20.1 0.2 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20088978|ref|NP_615053.1| - 8.6e-14 50.5 3.4 0.0011 18.9 0.2 5.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20088978|ref|NP_615053.1| - 1.6e-13 50.9 0.4 4.3e-05 23.9 0.5 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20088978|ref|NP_615053.1| - 6.3e-13 47.8 3.4 0.00028 20.8 0.0 4.7 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20088978|ref|NP_615053.1| - 2.8e-09 37.0 0.3 0.064 14.1 0.1 5.9 3 1 3 6 6 5 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20088978|ref|NP_615053.1| - 4.9e-09 35.7 0.9 0.00081 19.0 0.0 3.9 1 1 2 3 3 3 2 TPR repeat TPR_12 PF13424.6 gi|20088978|ref|NP_615053.1| - 6.4e-08 32.8 1.6 0.00021 21.5 0.1 4.0 2 1 2 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20088978|ref|NP_615053.1| - 9.3e-08 32.2 0.8 8.7e-07 29.1 0.1 2.8 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|20088978|ref|NP_615053.1| - 2.9e-07 31.0 0.0 8.2e-05 23.2 0.0 2.9 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20088978|ref|NP_615053.1| - 3.3e-06 27.1 0.8 0.00042 20.4 0.1 3.2 3 1 2 5 5 4 2 Tetratricopeptide repeat AAA_16 PF13191.6 gi|20088978|ref|NP_615053.1| - 1.3e-05 25.6 0.1 0.00017 22.0 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain HTH_24 PF13412.6 gi|20088978|ref|NP_615053.1| - 2e-05 24.0 0.0 7e-05 22.3 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding SRP_TPR_like PF17004.5 gi|20088978|ref|NP_615053.1| - 4.2e-05 23.6 7.3 0.00014 21.8 0.8 3.7 3 1 1 4 4 3 1 Putative TPR-like repeat TPR_17 PF13431.6 gi|20088978|ref|NP_615053.1| - 0.0003 20.9 0.6 8.6 7.0 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat MarR_2 PF12802.7 gi|20088978|ref|NP_615053.1| - 0.00033 20.5 0.1 0.00081 19.2 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|20088978|ref|NP_615053.1| - 0.00055 19.8 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|20088978|ref|NP_615053.1| - 0.00058 19.7 0.0 0.002 17.9 0.0 2.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|20088978|ref|NP_615053.1| - 0.00073 19.7 0.0 0.0026 17.9 0.0 2.0 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TPR_7 PF13176.6 gi|20088978|ref|NP_615053.1| - 0.00081 19.3 0.1 3.5 7.9 0.1 3.6 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20088978|ref|NP_615053.1| - 0.0035 17.9 0.1 0.16 12.6 0.0 3.7 3 0 0 3 3 2 1 Tetratricopeptide repeat TrmB PF01978.19 gi|20088978|ref|NP_615053.1| - 0.0072 16.2 1.0 0.065 13.1 0.1 2.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_22 PF13401.6 gi|20088978|ref|NP_615053.1| - 0.0081 16.4 0.0 0.028 14.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain Fis1_TPR_C PF14853.6 gi|20088978|ref|NP_615053.1| - 0.015 15.4 0.7 9.5 6.4 0.1 3.5 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|20088978|ref|NP_615053.1| - 0.022 15.2 0.2 3.3 8.1 0.0 2.5 1 1 1 2 2 2 0 Bacterial transcriptional activator domain MIT PF04212.18 gi|20088978|ref|NP_615053.1| - 0.036 14.1 2.7 23 5.1 0.2 4.6 3 1 2 5 5 3 0 MIT (microtubule interacting and transport) domain HTH_11 PF08279.12 gi|20088978|ref|NP_615053.1| - 0.038 13.9 0.0 0.16 11.9 0.0 2.2 1 0 0 1 1 1 0 HTH domain DUF4736 PF15883.5 gi|20088978|ref|NP_615053.1| - 0.056 13.2 1.3 4.7 6.9 0.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4736) DprA_WH PF17782.1 gi|20088978|ref|NP_615053.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 DprA winged helix domain Cyc-maltodext_C PF10438.9 gi|20088978|ref|NP_615053.1| - 0.075 13.1 0.2 0.6 10.2 0.0 2.7 2 0 0 2 2 1 0 Cyclo-malto-dextrinase C-terminal domain HTH_20 PF12840.7 gi|20088978|ref|NP_615053.1| - 0.079 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_14 PF13173.6 gi|20088978|ref|NP_615053.1| - 0.093 12.8 0.2 0.093 12.8 0.2 3.2 4 1 0 4 4 3 0 AAA domain Rrf2 PF02082.20 gi|20088978|ref|NP_615053.1| - 0.12 12.7 0.0 0.33 11.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PaaX PF07848.12 gi|20088978|ref|NP_615053.1| - 0.13 12.5 0.2 0.32 11.3 0.2 1.6 1 0 0 1 1 1 0 PaaX-like protein Imm3 PF14425.6 gi|20088978|ref|NP_615053.1| - 1.1 9.3 8.8 2.3 8.3 1.4 3.6 3 0 0 3 3 3 0 Immunity protein Imm3 MutS_V PF00488.21 gi|20088979|ref|NP_615054.1| - 8.2e-07 29.2 0.0 1.4e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|20088979|ref|NP_615054.1| - 0.00012 22.6 0.2 0.0011 19.6 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|20088979|ref|NP_615054.1| - 0.022 14.8 0.1 0.1 12.7 0.1 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA_23 PF13476.6 gi|20088979|ref|NP_615054.1| - 0.042 14.4 1.9 1.4 9.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain 5_3_exonuc PF01367.20 gi|20088979|ref|NP_615054.1| - 0.12 13.0 0.7 0.6 10.7 0.0 2.5 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold AAA_28 PF13521.6 gi|20088979|ref|NP_615054.1| - 0.19 11.9 0.4 0.93 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain PP_kinase_C_1 PF17941.1 gi|20088980|ref|NP_615055.1| - 1.5e-74 249.1 0.0 2.3e-74 248.5 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|20088980|ref|NP_615055.1| - 5.4e-64 215.5 0.1 1.7e-63 213.9 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_C PF13090.6 gi|20088980|ref|NP_615055.1| - 1.5e-62 210.1 0.1 4.8e-62 208.4 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_N PF13089.6 gi|20088980|ref|NP_615055.1| - 9.1e-36 122.4 0.3 2.6e-35 121.0 0.3 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|20088980|ref|NP_615055.1| - 1.3e-10 41.3 0.0 7.6e-07 29.1 0.0 2.9 2 1 0 2 2 2 2 PLD-like domain Succ_CoA_lig PF13607.6 gi|20088980|ref|NP_615055.1| - 0.096 12.5 0.3 0.19 11.5 0.3 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain MR_MLE_C PF13378.6 gi|20088980|ref|NP_615055.1| - 0.26 10.8 0.8 0.5 9.9 0.8 1.4 1 0 0 1 1 1 0 Enolase C-terminal domain-like Ppx-GppA PF02541.16 gi|20088982|ref|NP_615057.1| - 1.8e-62 211.4 0.1 2.7e-62 210.8 0.1 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.22 gi|20088982|ref|NP_615057.1| - 2.6e-09 37.4 1.6 2.6e-09 37.4 1.6 1.8 2 0 0 2 2 2 1 HD domain FtsA PF14450.6 gi|20088982|ref|NP_615057.1| - 0.011 16.2 0.0 0.17 12.3 0.0 2.5 2 1 0 2 2 2 0 Cell division protein FtsA DDR PF08841.10 gi|20088982|ref|NP_615057.1| - 0.094 11.7 0.0 0.41 9.6 0.0 1.8 1 1 1 2 2 2 0 Diol dehydratase reactivase ATPase-like domain CHAD PF05235.14 gi|20088983|ref|NP_615058.1| - 2.6e-54 184.6 1.0 2.6e-54 184.6 1.0 2.4 3 0 0 3 3 3 1 CHAD domain CYTH PF01928.21 gi|20088983|ref|NP_615058.1| - 1.4e-28 100.0 1.1 1.4e-28 100.0 1.1 2.3 2 1 0 2 2 2 1 CYTH domain DUF2521 PF10730.9 gi|20088983|ref|NP_615058.1| - 0.015 15.3 0.4 0.045 13.8 0.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2521) HD PF01966.22 gi|20088983|ref|NP_615058.1| - 0.12 12.6 0.0 0.47 10.7 0.0 2.0 1 0 0 1 1 1 0 HD domain DUF4404 PF14357.6 gi|20088983|ref|NP_615058.1| - 0.49 11.1 2.8 2 9.1 2.8 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Peptidase_S49_N PF08496.10 gi|20088983|ref|NP_615058.1| - 1.2 9.2 7.2 4 7.5 7.2 1.9 1 0 0 1 1 1 0 Peptidase family S49 N-terminal AAA_16 PF13191.6 gi|20088984|ref|NP_615059.1| - 8.1e-12 45.8 0.0 1.3e-10 42.0 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|20088984|ref|NP_615059.1| - 1.1e-06 29.1 0.0 2.5e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|20088984|ref|NP_615059.1| - 5.7e-06 26.2 0.1 0.00013 21.9 0.0 2.6 2 1 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_7 PF12775.7 gi|20088984|ref|NP_615059.1| - 9.5e-05 22.0 0.0 0.004 16.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_11 PF13086.6 gi|20088984|ref|NP_615059.1| - 0.00015 21.6 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20088984|ref|NP_615059.1| - 0.0004 20.7 0.0 0.00083 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49_C PF17856.1 gi|20088984|ref|NP_615059.1| - 0.013 15.6 0.0 0.035 14.2 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain DUF815 PF05673.13 gi|20088984|ref|NP_615059.1| - 0.016 14.3 0.0 0.077 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|20088984|ref|NP_615059.1| - 0.027 14.4 0.1 0.058 13.3 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.14 gi|20088984|ref|NP_615059.1| - 0.028 14.4 0.0 0.066 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF835 PF05763.12 gi|20088984|ref|NP_615059.1| - 0.03 14.0 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) AAA_30 PF13604.6 gi|20088984|ref|NP_615059.1| - 0.039 13.7 0.0 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|20088984|ref|NP_615059.1| - 0.039 13.7 0.0 2.5 7.8 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_32 PF13654.6 gi|20088984|ref|NP_615059.1| - 0.041 12.7 0.0 2.3 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|20088984|ref|NP_615059.1| - 0.075 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|20088984|ref|NP_615059.1| - 0.097 12.8 0.0 0.26 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|20088984|ref|NP_615059.1| - 0.1 12.9 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20088984|ref|NP_615059.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|20088984|ref|NP_615059.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein NB-ARC PF00931.22 gi|20088984|ref|NP_615059.1| - 0.13 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Penicillinase_R PF03965.16 gi|20088984|ref|NP_615059.1| - 0.15 12.4 0.0 0.38 11.1 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor Cpn60_TCP1 PF00118.24 gi|20088985|ref|NP_615060.1| - 6.1e-182 605.6 20.7 7e-182 605.4 20.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HSP70 PF00012.20 gi|20088986|ref|NP_615061.1| - 9.4e-185 615.2 4.9 3.1e-182 606.9 4.9 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|20088986|ref|NP_615061.1| - 8.6e-15 54.4 1.7 2.2e-14 53.1 1.7 1.6 1 1 0 1 1 1 1 MreB/Mbl protein FtsA PF14450.6 gi|20088986|ref|NP_615061.1| - 2.1e-05 24.9 0.2 0.18 12.3 0.0 3.2 2 2 0 2 2 2 2 Cell division protein FtsA FGGY_C PF02782.16 gi|20088986|ref|NP_615061.1| - 0.0022 17.7 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.11 gi|20088986|ref|NP_615061.1| - 0.0024 17.2 0.8 0.93 8.7 0.1 2.8 2 1 1 3 3 3 2 StbA protein BcrAD_BadFG PF01869.20 gi|20088986|ref|NP_615061.1| - 0.0057 16.2 0.1 0.35 10.3 0.0 2.2 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Hexokinase_1 PF00349.21 gi|20088986|ref|NP_615061.1| - 0.027 14.4 0.1 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 Hexokinase Raco_middle PF17651.1 gi|20088986|ref|NP_615061.1| - 0.077 12.7 0.0 17 5.1 0.0 2.6 2 0 0 2 2 2 0 RACo middle region DnaJ PF00226.31 gi|20088987|ref|NP_615062.1| - 1.1e-19 70.3 6.4 2.3e-19 69.3 6.4 1.5 1 0 0 1 1 1 1 DnaJ domain DUF169 PF02596.15 gi|20088988|ref|NP_615063.1| - 1.3e-26 93.8 0.0 1.5e-26 93.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 tRNA-synt_2d PF01409.20 gi|20088989|ref|NP_615064.1| - 2e-55 188.0 0.0 2e-50 171.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|20088989|ref|NP_615064.1| - 6.8e-13 48.5 0.0 1.8e-12 47.1 0.0 1.8 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|20088989|ref|NP_615064.1| - 5.2e-10 39.1 0.0 1.5e-06 27.8 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|20088989|ref|NP_615064.1| - 0.062 12.4 0.1 3 6.8 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) Lambda_Bor PF06291.11 gi|20088989|ref|NP_615064.1| - 0.11 12.6 0.0 0.31 11.1 0.0 1.8 1 0 0 1 1 1 0 Bor protein Translin PF01997.16 gi|20088990|ref|NP_615065.1| - 1.9e-06 28.0 0.1 1.7e-05 24.9 0.1 2.0 1 1 0 1 1 1 1 Translin family UPF0147 PF03685.13 gi|20088991|ref|NP_615066.1| - 2.2e-34 117.4 1.8 2.6e-34 117.1 1.8 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|20088991|ref|NP_615066.1| - 0.023 14.9 0.1 0.51 10.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) IBN_N PF03810.19 gi|20088991|ref|NP_615066.1| - 0.082 12.8 0.2 8.8 6.3 0.0 2.2 1 1 1 2 2 2 0 Importin-beta N-terminal domain DUF3361 PF11841.8 gi|20088991|ref|NP_615066.1| - 0.3 11.0 1.8 0.95 9.4 1.6 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3361) Auto_anti-p27 PF06677.12 gi|20088992|ref|NP_615067.1| - 3.3e-12 46.4 0.3 5.3e-12 45.7 0.3 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MULE PF10551.9 gi|20088994|ref|NP_615069.1| - 5.4e-07 29.9 0.1 1.5e-06 28.5 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain ADK_lid PF05191.14 gi|20088994|ref|NP_615069.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20088994|ref|NP_615069.1| - 0.022 14.8 0.4 0.063 13.3 0.1 2.0 2 0 0 2 2 2 0 Tumour suppressor protein DUF659 PF04937.15 gi|20088994|ref|NP_615069.1| - 0.033 14.0 1.1 0.059 13.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20088994|ref|NP_615069.1| - 0.043 13.7 0.9 0.12 12.3 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20088994|ref|NP_615069.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20088994|ref|NP_615069.1| - 0.064 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC5 PF18718.1 gi|20088994|ref|NP_615069.1| - 0.2 11.7 3.5 0.44 10.6 3.5 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20088994|ref|NP_615069.1| - 0.24 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20088994|ref|NP_615069.1| - 6.9 6.7 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger ERCC4 PF02732.15 gi|20088995|ref|NP_615070.1| - 1.4e-25 90.4 0.1 5e-25 88.5 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|20088995|ref|NP_615070.1| - 2e-23 82.9 0.4 7.8e-21 74.5 0.0 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|20088995|ref|NP_615070.1| - 2.6e-17 63.1 0.0 1.4e-16 60.8 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|20088995|ref|NP_615070.1| - 6.9e-15 55.5 0.0 3.2e-14 53.3 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|20088995|ref|NP_615070.1| - 5e-12 46.3 0.2 1.4e-11 44.8 0.2 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|20088995|ref|NP_615070.1| - 2.4e-10 40.4 0.0 6.6e-10 38.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|20088995|ref|NP_615070.1| - 1.7e-05 24.5 0.1 0.00013 21.6 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|20088995|ref|NP_615070.1| - 0.0023 18.5 2.6 0.027 15.1 0.1 3.2 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|20088995|ref|NP_615070.1| - 0.036 14.3 0.1 0.23 11.8 0.1 2.5 1 1 0 1 1 1 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|20088995|ref|NP_615070.1| - 0.041 14.3 0.3 0.2 12.0 0.2 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain PGM_PMM_II PF02879.16 gi|20088995|ref|NP_615070.1| - 0.083 13.5 0.0 16 6.2 0.0 3.0 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HGTP_anticodon PF03129.20 gi|20088996|ref|NP_615071.1| - 1.4e-20 73.2 2.6 5.7e-20 71.3 0.1 3.0 4 0 0 4 4 4 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|20088996|ref|NP_615071.1| - 4.7e-08 33.2 0.0 1.1e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|20088996|ref|NP_615071.1| - 8.3 6.6 7.1 12 6.2 4.7 2.4 2 1 0 2 2 2 0 Zinc ribbon domain Polbeta PF18765.1 gi|20088998|ref|NP_615073.1| - 9.8e-16 57.6 0.1 1.3e-15 57.3 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20088998|ref|NP_615073.1| - 5.3e-09 36.3 0.2 6.4e-09 36.0 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 gi|20088998|ref|NP_615073.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NTP_transf_2 PF01909.23 gi|20088999|ref|NP_615074.1| - 9.9e-15 54.6 0.1 1.2e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20088999|ref|NP_615074.1| - 4.3e-14 52.4 0.0 4.9e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|20089000|ref|NP_615075.1| - 6e-27 93.9 0.1 7.4e-27 93.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|20089001|ref|NP_615076.1| - 1.2e-17 63.9 0.6 1.4e-17 63.7 0.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20089001|ref|NP_615076.1| - 8.6e-15 54.6 0.3 1e-14 54.4 0.3 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|20089001|ref|NP_615076.1| - 0.21 11.4 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Gpr1_Fun34_YaaH PF01184.19 gi|20089002|ref|NP_615077.1| - 8.3e-33 113.7 17.0 1.1e-32 113.4 17.0 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Ac81 PF05820.11 gi|20089002|ref|NP_615077.1| - 0.81 9.2 4.1 1.5 8.4 4.1 1.4 1 0 0 1 1 1 0 Baculoviridae AC81 SurE PF01975.17 gi|20089003|ref|NP_615078.1| - 1.6e-51 174.8 0.0 1.9e-51 174.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Radical_SAM PF04055.21 gi|20089004|ref|NP_615079.1| - 2.2e-32 112.8 0.5 6.2e-32 111.3 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|20089004|ref|NP_615079.1| - 3.2e-20 72.4 0.1 5.1e-20 71.7 0.1 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|20089004|ref|NP_615079.1| - 2.3e-08 34.4 0.4 1.7e-07 31.6 0.3 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20089004|ref|NP_615079.1| - 8.3e-05 22.7 0.3 0.00016 21.7 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain GATase_3 PF07685.14 gi|20089005|ref|NP_615080.1| - 5.3e-33 114.3 0.0 7.5e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|20089005|ref|NP_615080.1| - 3.2e-22 79.3 3.6 4e-20 72.5 3.6 2.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|20089005|ref|NP_615080.1| - 6.5e-19 68.3 0.0 1e-18 67.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YHYH PF14240.6 gi|20089005|ref|NP_615080.1| - 0.044 13.7 0.1 1.1 9.1 0.0 2.2 1 1 1 2 2 2 0 YHYH protein DUF1611 PF07755.11 gi|20089005|ref|NP_615080.1| - 0.048 12.9 0.7 0.12 11.7 0.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_31 PF13614.6 gi|20089005|ref|NP_615080.1| - 0.12 12.2 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|20089005|ref|NP_615080.1| - 0.13 12.2 0.2 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 NTPase ParA PF10609.9 gi|20089005|ref|NP_615080.1| - 0.17 11.3 0.4 0.29 10.5 0.4 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_19 PF13245.6 gi|20089005|ref|NP_615080.1| - 0.18 12.2 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain adh_short_C2 PF13561.6 gi|20089006|ref|NP_615081.1| - 1.7e-65 220.8 0.5 2e-65 220.6 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|20089006|ref|NP_615081.1| - 1.6e-57 194.1 1.6 1.9e-57 193.9 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|20089006|ref|NP_615081.1| - 5.2e-15 55.8 0.3 6.9e-15 55.4 0.3 1.2 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|20089006|ref|NP_615081.1| - 8.8e-06 25.1 0.2 1.2e-05 24.6 0.2 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|20089006|ref|NP_615081.1| - 3.6e-05 23.3 0.2 5.4e-05 22.8 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|20089006|ref|NP_615081.1| - 0.0017 18.3 0.1 0.0021 18.0 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding DFP PF04127.15 gi|20089006|ref|NP_615081.1| - 0.0062 16.4 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Pyr_redox PF00070.27 gi|20089006|ref|NP_615081.1| - 0.0072 16.9 0.2 0.0072 16.9 0.2 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 3Beta_HSD PF01073.19 gi|20089006|ref|NP_615081.1| - 0.018 14.0 0.2 0.024 13.7 0.2 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Glyco_trans_4_2 PF13477.6 gi|20089006|ref|NP_615081.1| - 0.02 14.9 0.0 0.044 13.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like NmrA PF05368.13 gi|20089006|ref|NP_615081.1| - 0.029 13.9 0.6 0.05 13.1 0.6 1.4 1 0 0 1 1 1 0 NmrA-like family Pyr_redox_2 PF07992.14 gi|20089006|ref|NP_615081.1| - 0.036 13.3 0.1 0.061 12.5 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase THF_DHG_CYH_C PF02882.19 gi|20089006|ref|NP_615081.1| - 0.048 13.0 0.1 0.15 11.4 0.1 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF3696 PF12476.8 gi|20089006|ref|NP_615081.1| - 0.051 14.0 0.0 1.6 9.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3696) LpxI_N PF17930.1 gi|20089006|ref|NP_615081.1| - 0.062 13.2 0.4 0.21 11.5 0.2 1.9 2 0 0 2 2 2 0 LpxI N-terminal domain 3HCDH_N PF02737.18 gi|20089006|ref|NP_615081.1| - 0.063 13.2 0.9 0.091 12.6 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|20089006|ref|NP_615081.1| - 0.076 13.3 0.2 0.22 11.8 0.2 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|20089006|ref|NP_615081.1| - 0.11 11.6 0.1 0.17 11.0 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain MAM1 PF10434.9 gi|20089006|ref|NP_615081.1| - 0.15 11.7 0.3 0.22 11.1 0.3 1.1 1 0 0 1 1 1 0 Monopolin complex protein MAM1 Glyoxalase_2 PF12681.7 gi|20089007|ref|NP_615082.1| - 2.5e-54 182.2 1.8 3e-54 182.0 1.8 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|20089007|ref|NP_615082.1| - 0.00011 22.4 0.5 0.0013 18.9 0.3 2.2 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF2172 PF09940.9 gi|20089007|ref|NP_615082.1| - 0.09 13.2 0.0 2.1 8.8 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2172) DNA_primase_lrg PF04104.14 gi|20089008|ref|NP_615083.1| - 8e-31 107.4 0.0 1.8e-30 106.2 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.18 gi|20089009|ref|NP_615084.1| - 5.9e-12 45.4 0.5 1.3e-11 44.3 0.1 1.7 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|20089009|ref|NP_615084.1| - 2.9e-10 40.4 0.0 6.4e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|20089009|ref|NP_615084.1| - 0.00052 19.6 0.0 0.0013 18.2 0.0 1.6 2 0 0 2 2 2 1 Rad9 TFIIS_C PF01096.18 gi|20089011|ref|NP_615086.1| - 2.3e-18 65.7 3.9 2.3e-18 65.7 3.9 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|20089011|ref|NP_615086.1| - 2.2e-07 30.6 3.3 2.2e-07 30.6 3.3 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|20089011|ref|NP_615086.1| - 0.00023 21.0 8.6 0.001 19.0 0.6 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|20089011|ref|NP_615086.1| - 0.00057 19.4 9.4 0.06 12.9 1.6 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding zf_UBZ PF18439.1 gi|20089011|ref|NP_615086.1| - 0.00067 19.2 9.3 0.9 9.2 0.1 4.2 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|20089011|ref|NP_615086.1| - 0.0014 18.3 16.9 1.3 8.8 0.2 4.4 4 0 0 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|20089011|ref|NP_615086.1| - 0.0014 18.5 10.6 0.0081 16.1 1.8 2.5 1 1 1 2 2 2 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|20089011|ref|NP_615086.1| - 0.0016 18.3 6.9 0.13 12.2 0.2 3.5 3 1 0 3 3 3 1 Nudix N-terminal Ogr_Delta PF04606.12 gi|20089011|ref|NP_615086.1| - 0.0018 18.2 0.5 0.0018 18.2 0.5 2.3 3 0 0 3 3 2 1 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.6 gi|20089011|ref|NP_615086.1| - 0.0049 16.2 16.3 0.24 10.9 3.2 3.5 3 1 0 3 3 3 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|20089011|ref|NP_615086.1| - 0.0062 16.6 9.9 1.6 8.9 0.1 4.0 4 0 0 4 4 4 1 Zinc ribbon domain zf-ACC PF17848.1 gi|20089011|ref|NP_615086.1| - 0.0089 16.1 15.7 1.1 9.3 0.3 4.1 4 0 0 4 4 4 1 Acetyl-coA carboxylase zinc finger domain TackOD1 PF18551.1 gi|20089011|ref|NP_615086.1| - 0.009 15.7 7.4 0.037 13.7 0.8 2.7 2 1 0 2 2 2 1 Thaumarchaeal output domain 1 IBR PF01485.21 gi|20089011|ref|NP_615086.1| - 0.014 15.6 11.0 1.6 9.1 1.1 2.8 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zinc-ribbons_6 PF07191.12 gi|20089011|ref|NP_615086.1| - 0.017 15.1 9.8 0.027 14.4 1.3 2.6 2 2 0 2 2 2 0 zinc-ribbons Ribosomal_S27e PF01667.17 gi|20089011|ref|NP_615086.1| - 0.025 14.3 6.2 0.35 10.6 0.0 3.4 3 1 0 3 3 3 0 Ribosomal protein S27 zinc_ribbon_4 PF13717.6 gi|20089011|ref|NP_615086.1| - 0.026 14.4 15.2 1.3 9.0 0.9 4.2 3 1 1 4 4 4 0 zinc-ribbon domain FdhE PF04216.12 gi|20089011|ref|NP_615086.1| - 0.029 14.3 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DZR PF12773.7 gi|20089011|ref|NP_615086.1| - 0.044 13.8 13.7 22 5.2 14.1 2.9 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|20089011|ref|NP_615086.1| - 0.045 13.6 7.8 0.68 9.9 1.7 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-AN1 PF01428.16 gi|20089011|ref|NP_615086.1| - 0.048 13.8 10.6 9.3 6.5 3.2 3.3 3 0 0 3 3 3 0 AN1-like Zinc finger HypA PF01155.19 gi|20089011|ref|NP_615086.1| - 0.069 13.2 7.5 0.25 11.4 3.0 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE PF01363.21 gi|20089011|ref|NP_615086.1| - 0.076 13.2 8.3 0.75 10.0 8.3 2.3 1 1 0 1 1 1 0 FYVE zinc finger SelR PF01641.18 gi|20089011|ref|NP_615086.1| - 0.1 12.6 1.5 0.19 11.8 0.4 1.9 1 1 1 2 2 2 0 SelR domain Rubredoxin_2 PF18073.1 gi|20089011|ref|NP_615086.1| - 0.13 12.0 16.1 2.7 7.8 0.8 3.8 4 0 0 4 4 4 0 Rubredoxin metal binding domain Terminase_GpA PF05876.12 gi|20089011|ref|NP_615086.1| - 0.14 10.7 4.9 0.091 11.3 1.6 1.9 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ZPR1 PF03367.13 gi|20089011|ref|NP_615086.1| - 0.14 12.0 0.0 0.14 12.0 0.0 1.9 3 0 0 3 3 2 0 ZPR1 zinc-finger domain zf-SNAP50_C PF12251.8 gi|20089011|ref|NP_615086.1| - 0.17 11.5 4.4 0.58 9.8 0.3 2.1 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal DUF2752 PF10825.8 gi|20089011|ref|NP_615086.1| - 0.19 11.8 3.1 0.54 10.4 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) DNA_RNApol_7kD PF03604.13 gi|20089011|ref|NP_615086.1| - 0.19 11.4 11.1 6.5 6.5 0.1 3.8 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.12 gi|20089011|ref|NP_615086.1| - 0.24 11.9 8.8 1 9.9 3.5 2.7 1 1 1 2 2 2 0 CHY zinc finger DUF2387 PF09526.10 gi|20089011|ref|NP_615086.1| - 0.33 11.1 4.1 0.39 10.9 0.5 2.2 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) DUF3268 PF11672.8 gi|20089011|ref|NP_615086.1| - 0.33 11.3 3.6 1.2 9.5 0.2 2.2 2 1 0 2 2 2 0 zinc-finger-containing domain Baculo_LEF5_C PF11792.8 gi|20089011|ref|NP_615086.1| - 0.36 10.5 0.1 0.36 10.5 0.1 3.6 5 0 0 5 5 4 0 Baculoviridae late expression factor 5 C-terminal domain GFA PF04828.14 gi|20089011|ref|NP_615086.1| - 0.4 11.1 10.9 0.22 11.9 0.3 3.5 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbon_6 PF10005.9 gi|20089011|ref|NP_615086.1| - 0.64 10.7 6.1 3.3 8.5 6.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-3CxxC_2 PF17180.4 gi|20089011|ref|NP_615086.1| - 0.71 10.6 18.0 13 6.7 0.0 4.1 2 2 2 4 4 4 0 Zinc-binding domain Desulfoferrod_N PF06397.12 gi|20089011|ref|NP_615086.1| - 1 9.0 11.4 2.6 7.7 0.1 3.5 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain zf-IS66 PF13005.7 gi|20089011|ref|NP_615086.1| - 1 9.8 5.8 32 5.0 0.0 3.6 4 0 0 4 4 3 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.10 gi|20089011|ref|NP_615086.1| - 1.3 8.9 15.4 0.42 10.4 2.7 3.4 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|20089011|ref|NP_615086.1| - 1.5 9.0 13.9 4.2 7.6 0.8 3.4 3 1 1 4 4 3 0 Zinc-finger of mitochondrial splicing suppressor 51 PADR1 PF08063.12 gi|20089011|ref|NP_615086.1| - 1.5 8.6 10.9 7.3 6.5 2.8 3.2 3 1 0 3 3 3 0 PADR1 (NUC008) domain C1_2 PF03107.16 gi|20089011|ref|NP_615086.1| - 1.6 9.1 12.5 1 9.7 1.9 2.8 2 1 0 2 2 2 0 C1 domain zf-LITAF-like PF10601.9 gi|20089011|ref|NP_615086.1| - 2.4 8.5 8.9 9.6 6.6 0.0 3.4 3 1 0 3 3 3 0 LITAF-like zinc ribbon domain DUF3797 PF12677.7 gi|20089011|ref|NP_615086.1| - 2.6 8.0 13.7 1.8 8.5 5.4 3.1 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) YhfH PF14149.6 gi|20089011|ref|NP_615086.1| - 2.6 8.1 12.7 11 6.1 0.2 3.8 3 1 1 4 4 3 0 YhfH-like protein zf-HIT PF04438.16 gi|20089011|ref|NP_615086.1| - 2.9 7.9 16.8 7.4 6.5 6.0 3.4 3 1 0 3 3 3 0 HIT zinc finger DUF35_N PF12172.8 gi|20089011|ref|NP_615086.1| - 3.4 7.6 10.2 43 4.1 0.1 3.7 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.9 gi|20089011|ref|NP_615086.1| - 4.3 7.5 15.6 3.9 7.6 0.2 3.9 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Baculo_ME53 PF06061.11 gi|20089011|ref|NP_615086.1| - 5.4 6.2 6.4 21 4.2 0.1 2.2 2 1 0 2 2 2 0 Baculoviridae ME53 Zn_ribbon_SprT PF17283.2 gi|20089011|ref|NP_615086.1| - 6 6.9 15.4 59 3.7 0.2 3.8 3 1 0 3 3 3 0 SprT-like zinc ribbon domain CpXC PF14353.6 gi|20089011|ref|NP_615086.1| - 7.5 6.6 8.9 62 3.7 0.1 3.3 2 2 0 2 2 2 0 CpXC protein DUF2318 PF10080.9 gi|20089011|ref|NP_615086.1| - 9.1 6.5 9.3 0.82 9.8 1.6 2.7 1 1 0 3 3 3 0 Predicted membrane protein (DUF2318) NUDIX PF00293.28 gi|20089012|ref|NP_615087.1| - 9e-20 71.0 0.0 1.1e-19 70.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain z-alpha PF02295.17 gi|20089012|ref|NP_615087.1| - 0.042 13.9 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF4916 PF16262.5 gi|20089012|ref|NP_615087.1| - 0.062 12.8 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4916) Exosortase_EpsH PF09721.10 gi|20089013|ref|NP_615088.1| - 3.3e-11 43.2 12.1 7.7e-11 42.0 10.9 1.7 1 1 1 2 2 2 1 Transmembrane exosortase (Exosortase_EpsH) PRCH PF03967.13 gi|20089013|ref|NP_615088.1| - 0.075 13.3 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 Photosynthetic reaction centre, H-chain N-terminal region PS_Dcarbxylase PF02666.15 gi|20089014|ref|NP_615089.1| - 1.5e-28 99.8 1.7 3.7e-24 85.4 0.3 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.6 gi|20089014|ref|NP_615089.1| - 0.0042 17.0 0.4 3.7 7.6 0.0 3.7 1 1 3 4 4 4 1 RnfC Barrel sandwich hybrid domain CDP-OH_P_transf PF01066.21 gi|20089015|ref|NP_615090.1| - 8.9e-14 52.0 0.6 8.9e-14 52.0 0.6 3.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DHNA PF04038.12 gi|20089016|ref|NP_615091.1| - 1.5e-45 154.2 0.0 1.6e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Aminotran_1_2 PF00155.21 gi|20089017|ref|NP_615092.1| - 1.3e-59 202.2 0.0 1.5e-59 202.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|20089017|ref|NP_615092.1| - 1.4e-11 44.3 0.0 2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|20089017|ref|NP_615092.1| - 4.4e-06 25.9 0.0 2.5e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Alliinase_C PF04864.13 gi|20089017|ref|NP_615092.1| - 0.00074 18.5 0.0 0.0012 17.9 0.0 1.3 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|20089017|ref|NP_615092.1| - 0.0033 16.0 0.0 0.0072 14.9 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|20089018|ref|NP_615093.1| - 2.4e-119 398.6 0.6 2.8e-119 398.4 0.6 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|20089018|ref|NP_615093.1| - 3e-06 26.7 0.0 5e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|20089018|ref|NP_615093.1| - 3.1e-05 23.4 0.1 0.00011 21.6 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|20089018|ref|NP_615093.1| - 5.3e-05 22.7 0.1 0.00011 21.6 0.1 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|20089018|ref|NP_615093.1| - 0.00067 18.3 0.0 0.00092 17.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|20089018|ref|NP_615093.1| - 0.0016 17.5 0.0 0.0027 16.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V SeqA PF03925.13 gi|20089018|ref|NP_615093.1| - 0.15 12.0 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 SeqA protein C-terminal domain Bactofilin PF04519.13 gi|20089019|ref|NP_615094.1| - 7.4e-08 32.6 18.6 1.5e-05 25.2 4.0 3.9 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|20089019|ref|NP_615094.1| - 2.3e-06 27.1 19.0 0.0011 18.6 0.0 5.6 6 1 0 6 6 6 4 Bacterial transferase hexapeptide (six repeats) PAAR_motif PF05488.13 gi|20089019|ref|NP_615094.1| - 0.018 15.2 0.1 0.045 13.9 0.1 1.7 1 0 0 1 1 1 0 PAAR motif HGD-D PF06050.13 gi|20089019|ref|NP_615094.1| - 0.066 13.0 0.0 0.097 12.4 0.0 1.1 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component TGT_C2 PF14810.6 gi|20089020|ref|NP_615095.1| - 7.5e-28 96.5 0.1 1.3e-27 95.7 0.1 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|20089020|ref|NP_615095.1| - 4.4e-11 42.6 0.1 8.6e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|20089020|ref|NP_615095.1| - 0.013 15.7 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain Phage_CI_C PF16452.5 gi|20089020|ref|NP_615095.1| - 0.17 12.1 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor C-terminal domain RACo_linker PF17650.1 gi|20089022|ref|NP_615097.1| - 0.0089 15.9 0.0 5.7 6.9 0.0 2.4 2 0 0 2 2 2 2 RACo linker region BPL_N PF09825.9 gi|20089024|ref|NP_615099.1| - 0.061 12.4 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal DUF1894 PF08979.11 gi|20089025|ref|NP_615100.1| - 1.1e-32 112.3 0.1 1.3e-32 112.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) NAD_binding_8 PF13450.6 gi|20089026|ref|NP_615101.1| - 5.4e-14 52.2 0.0 1.5e-13 50.8 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|20089026|ref|NP_615101.1| - 2.7e-13 50.0 0.0 3.8e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.14 gi|20089026|ref|NP_615101.1| - 1.6e-08 33.7 0.0 1.8e-06 27.0 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|20089026|ref|NP_615101.1| - 3.2e-07 29.8 0.0 1.1e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|20089026|ref|NP_615101.1| - 8.8e-07 28.8 0.2 2.4e-05 24.1 0.1 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|20089026|ref|NP_615101.1| - 5e-06 26.0 0.3 0.0017 17.7 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|20089026|ref|NP_615101.1| - 2.1e-05 23.9 0.1 0.011 15.0 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|20089026|ref|NP_615101.1| - 3.3e-05 23.3 0.1 0.00012 21.5 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|20089026|ref|NP_615101.1| - 4.3e-05 23.0 0.1 0.00031 20.2 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase GDI PF00996.18 gi|20089026|ref|NP_615101.1| - 0.00018 20.2 0.2 0.00033 19.3 0.2 1.4 1 0 0 1 1 1 1 GDP dissociation inhibitor GIDA PF01134.22 gi|20089026|ref|NP_615101.1| - 0.00027 20.1 0.2 0.022 13.9 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|20089026|ref|NP_615101.1| - 0.00064 20.2 6.2 0.0013 19.2 0.0 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|20089026|ref|NP_615101.1| - 0.00069 18.9 0.1 0.013 14.7 0.1 2.3 2 0 0 2 2 2 1 Thi4 family DUF4918 PF16265.5 gi|20089026|ref|NP_615101.1| - 0.015 14.9 0.8 0.028 13.9 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) AlaDh_PNT_C PF01262.21 gi|20089026|ref|NP_615101.1| - 0.016 14.5 0.0 0.039 13.3 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1890 PF09001.11 gi|20089027|ref|NP_615102.1| - 2.1e-55 186.9 0.1 2.4e-55 186.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) Polbeta PF18765.1 gi|20089027|ref|NP_615102.1| - 0.086 12.9 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Toprim_2 PF13155.6 gi|20089027|ref|NP_615102.1| - 0.11 12.9 0.0 12 6.4 0.0 2.1 1 1 1 2 2 2 0 Toprim-like DUF1894 PF08979.11 gi|20089028|ref|NP_615103.1| - 9e-37 125.3 0.7 1.1e-36 125.1 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) AIRS_C PF02769.22 gi|20089029|ref|NP_615104.1| - 3.9e-20 72.6 0.0 8.4e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|20089029|ref|NP_615104.1| - 6.2e-15 55.6 0.4 1.1e-14 54.8 0.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.28 gi|20089030|ref|NP_615105.1| - 1.9e-49 168.5 0.2 1.9e-49 168.5 0.2 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|20089030|ref|NP_615105.1| - 1.7e-25 88.6 2.5 8.5e-12 44.7 0.6 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|20089030|ref|NP_615105.1| - 8.1e-24 83.1 0.4 3.6e-12 45.8 0.1 2.9 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|20089030|ref|NP_615105.1| - 2.1e-05 24.4 2.0 0.0016 18.4 0.1 3.5 3 0 0 3 3 3 1 ACT domain HAD_2 PF13419.6 gi|20089030|ref|NP_615105.1| - 0.032 14.3 0.0 12 6.0 0.1 2.5 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PhosphMutase PF10143.9 gi|20089031|ref|NP_615106.1| - 5e-59 199.0 0.0 6.9e-59 198.5 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|20089031|ref|NP_615106.1| - 5.2e-40 137.4 0.0 6.4e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|20089031|ref|NP_615106.1| - 0.058 12.4 0.2 0.14 11.1 0.1 1.6 2 0 0 2 2 2 0 Alkaline phosphatase HSP20 PF00011.21 gi|20089032|ref|NP_615107.1| - 5.9e-23 81.0 1.6 7.1e-23 80.7 1.6 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|20089032|ref|NP_615107.1| - 6.2e-11 41.7 0.0 8.4e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|20089032|ref|NP_615107.1| - 5.9e-06 27.2 0.0 8.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|20089032|ref|NP_615107.1| - 0.0064 16.6 0.4 0.012 15.7 0.3 1.5 1 1 0 1 1 1 1 GvpH DUF1128 PF06569.11 gi|20089033|ref|NP_615108.1| - 0.17 11.9 1.5 3.6 7.6 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1128) F420_ligase PF01996.16 gi|20089034|ref|NP_615109.1| - 7.7e-61 205.5 0.0 9.7e-61 205.2 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.23 gi|20089035|ref|NP_615110.1| - 2.2e-29 101.3 1.7 3.7e-29 100.6 1.7 1.3 1 1 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|20089035|ref|NP_615110.1| - 8.7e-20 70.9 0.5 1.1e-19 70.6 0.5 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|20089035|ref|NP_615110.1| - 0.00038 20.5 0.4 0.001 19.1 0.2 1.6 1 1 1 2 2 2 1 Bd3614-like deaminase APOBEC_N PF08210.11 gi|20089035|ref|NP_615110.1| - 0.00055 19.9 0.6 0.0029 17.5 0.6 1.9 1 1 0 1 1 1 1 APOBEC-like N-terminal domain APOBEC3 PF18771.1 gi|20089035|ref|NP_615110.1| - 0.052 13.7 0.6 0.071 13.2 0.6 1.2 1 0 0 1 1 1 0 APOBEC3 OTT_1508_deam PF14441.6 gi|20089035|ref|NP_615110.1| - 0.073 13.1 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 OTT_1508-like deaminase NAD1 PF18778.1 gi|20089035|ref|NP_615110.1| - 0.1 12.7 0.8 0.15 12.2 0.8 1.2 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 SNAD4 PF18750.1 gi|20089035|ref|NP_615110.1| - 0.13 12.4 0.4 0.21 11.7 0.4 1.4 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 dCMP_cyt_deam_1 PF00383.23 gi|20089036|ref|NP_615111.1| - 1.7e-30 104.9 1.3 2.1e-30 104.6 1.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|20089036|ref|NP_615111.1| - 1.4e-20 73.5 0.1 1.7e-20 73.1 0.1 1.0 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|20089036|ref|NP_615111.1| - 0.0018 18.4 0.7 0.0036 17.4 0.3 1.6 1 1 1 2 2 2 1 Bd3614-like deaminase APOBEC_N PF08210.11 gi|20089036|ref|NP_615111.1| - 0.0031 17.4 0.6 0.015 15.2 0.6 1.9 1 1 0 1 1 1 1 APOBEC-like N-terminal domain OTT_1508_deam PF14441.6 gi|20089036|ref|NP_615111.1| - 0.037 14.0 0.2 0.059 13.4 0.2 1.3 1 0 0 1 1 1 0 OTT_1508-like deaminase ATP-grasp_3 PF02655.14 gi|20089036|ref|NP_615111.1| - 0.045 13.8 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain zf-C3HC4 PF00097.25 gi|20089036|ref|NP_615111.1| - 0.063 13.2 3.5 0.14 12.1 2.7 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) APOBEC3 PF18771.1 gi|20089036|ref|NP_615111.1| - 0.11 12.7 0.3 0.15 12.2 0.3 1.2 1 0 0 1 1 1 0 APOBEC3 SecD_SecF PF02355.16 gi|20089037|ref|NP_615112.1| - 9.6e-35 119.7 14.8 1.5e-34 119.1 14.8 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|20089037|ref|NP_615112.1| - 0.00019 20.8 0.2 0.00053 19.4 0.0 1.9 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.18 gi|20089037|ref|NP_615112.1| - 0.0066 14.6 16.7 0.0097 14.0 16.7 1.1 1 0 0 1 1 1 1 Patched family DUF4396 PF14342.6 gi|20089037|ref|NP_615112.1| - 4.5 7.6 13.7 1.8 8.9 9.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4396) SecD_SecF PF02355.16 gi|20089038|ref|NP_615113.1| - 2.3e-15 56.5 10.4 4.7e-15 55.5 10.4 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|20089038|ref|NP_615113.1| - 0.016 14.7 0.1 0.2 11.2 0.1 2.7 2 0 0 2 2 2 0 SecD/SecF GG Motif CheY-binding PF09078.11 gi|20089038|ref|NP_615113.1| - 0.61 10.2 3.5 0.42 10.8 0.6 2.1 2 0 0 2 2 2 0 CheY binding MMPL PF03176.15 gi|20089038|ref|NP_615113.1| - 0.84 8.5 18.4 1.5 7.7 18.4 1.4 1 0 0 1 1 1 0 MMPL family DNA_pol3_delta2 PF13177.6 gi|20089039|ref|NP_615114.1| - 1.2e-14 54.4 0.0 1.8e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|20089039|ref|NP_615114.1| - 5.4e-14 52.4 0.9 1.3e-13 51.2 0.2 2.0 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|20089039|ref|NP_615114.1| - 9.2e-12 45.5 0.0 2.7e-11 44.0 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|20089039|ref|NP_615114.1| - 8.2e-05 22.6 0.1 0.00037 20.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|20089039|ref|NP_615114.1| - 9.3e-05 22.2 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|20089039|ref|NP_615114.1| - 0.00022 21.2 0.1 0.00086 19.3 0.0 2.0 1 1 2 3 3 3 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|20089039|ref|NP_615114.1| - 0.0014 18.9 0.0 0.0048 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|20089039|ref|NP_615114.1| - 0.0015 17.8 0.0 0.0089 15.3 0.0 1.9 1 1 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|20089039|ref|NP_615114.1| - 0.0025 18.2 0.0 0.024 15.0 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|20089039|ref|NP_615114.1| - 0.003 17.5 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|20089039|ref|NP_615114.1| - 0.0034 17.2 0.4 0.4 10.4 0.0 3.4 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|20089039|ref|NP_615114.1| - 0.009 15.8 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|20089039|ref|NP_615114.1| - 0.011 16.1 3.0 0.032 14.6 0.5 2.5 2 0 0 2 2 2 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|20089039|ref|NP_615114.1| - 0.023 15.1 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|20089039|ref|NP_615114.1| - 0.06 13.5 0.0 0.19 11.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|20089039|ref|NP_615114.1| - 0.065 13.8 0.0 0.19 12.2 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20089039|ref|NP_615114.1| - 0.077 12.6 0.0 0.3 10.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain DUF3400 PF11880.8 gi|20089039|ref|NP_615114.1| - 0.1 12.1 0.1 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) RE_LlaMI PF09562.10 gi|20089039|ref|NP_615114.1| - 0.11 12.1 0.2 0.15 11.6 0.2 1.2 1 0 0 1 1 1 0 LlaMI restriction endonuclease SUR7 PF06687.12 gi|20089040|ref|NP_615115.1| - 0.39 10.3 4.2 0.48 10.0 4.2 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF2207 PF09972.9 gi|20089040|ref|NP_615115.1| - 2.8 6.6 5.1 2.9 6.5 5.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AA_permease PF00324.21 gi|20089041|ref|NP_615116.1| - 3.9e-38 131.3 44.8 5e-38 130.9 44.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|20089041|ref|NP_615116.1| - 5.9e-23 81.4 44.9 9.7e-23 80.7 44.7 1.4 1 1 0 1 1 1 1 Amino acid permease Herpes_LMP1 PF05297.11 gi|20089041|ref|NP_615116.1| - 4.2 6.5 14.8 0.064 12.4 3.3 2.9 3 0 0 3 3 3 0 Herpesvirus latent membrane protein 1 (LMP1) MtmB PF05369.12 gi|20089042|ref|NP_615117.1| - 1.9e-234 778.5 1.1 2.2e-234 778.3 1.1 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.17 gi|20089043|ref|NP_615118.1| - 3.8e-21 75.3 0.1 8.7e-21 74.1 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|20089043|ref|NP_615118.1| - 9.2e-16 58.0 0.4 1.8e-15 57.1 0.2 1.5 2 0 0 2 2 2 1 B12 binding domain RsbU_N PF08673.10 gi|20089043|ref|NP_615118.1| - 0.049 13.7 0.0 0.17 12.0 0.0 2.1 1 1 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain URO-D PF01208.17 gi|20089044|ref|NP_615119.1| - 7.3e-81 272.0 0.1 8.2e-81 271.8 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Flavodoxin_2 PF02525.17 gi|20089045|ref|NP_615120.1| - 1.6e-37 129.1 0.0 1.9e-37 128.9 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|20089045|ref|NP_615120.1| - 1.3e-11 44.5 0.0 1.6e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Methyltransf_25 PF13649.6 gi|20089046|ref|NP_615121.1| - 5.9e-19 68.6 0.0 1e-18 67.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089046|ref|NP_615121.1| - 7e-16 58.4 0.0 1e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089046|ref|NP_615121.1| - 1.3e-15 57.6 0.0 1.6e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089046|ref|NP_615121.1| - 1.5e-15 57.6 0.0 2.7e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089046|ref|NP_615121.1| - 3.9e-14 53.2 0.1 9.3e-14 52.0 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089046|ref|NP_615121.1| - 7.5e-14 51.6 0.1 8.7e-14 51.4 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_PK PF05891.12 gi|20089046|ref|NP_615121.1| - 1.5e-09 37.7 0.2 1.9e-09 37.4 0.2 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.11 gi|20089046|ref|NP_615121.1| - 2.4e-09 37.1 0.0 3.3e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|20089046|ref|NP_615121.1| - 5.5e-08 32.4 0.1 7.2e-08 32.1 0.1 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|20089046|ref|NP_615121.1| - 2.1e-07 30.3 0.1 3e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|20089046|ref|NP_615121.1| - 1.3e-06 28.3 0.0 1.8e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20089046|ref|NP_615121.1| - 5.4e-06 26.1 0.0 6.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|20089046|ref|NP_615121.1| - 2.8e-05 23.7 0.0 4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|20089046|ref|NP_615121.1| - 0.00026 20.1 0.1 0.00039 19.5 0.1 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_18 PF12847.7 gi|20089046|ref|NP_615121.1| - 0.00027 20.9 0.1 0.00041 20.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|20089046|ref|NP_615121.1| - 0.0011 18.1 0.1 0.0016 17.6 0.1 1.5 1 1 0 1 1 1 1 DREV methyltransferase TehB PF03848.14 gi|20089046|ref|NP_615121.1| - 0.0012 18.3 0.6 0.0025 17.3 0.5 1.5 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|20089046|ref|NP_615121.1| - 0.0013 18.2 0.4 0.0021 17.5 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase MethyltransfD12 PF02086.15 gi|20089046|ref|NP_615121.1| - 0.0015 18.3 0.8 0.0047 16.6 0.2 2.0 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase DUF43 PF01861.16 gi|20089046|ref|NP_615121.1| - 0.016 14.4 0.1 0.025 13.8 0.1 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain DUF3419 PF11899.8 gi|20089046|ref|NP_615121.1| - 0.017 14.3 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) DOT1 PF08123.13 gi|20089046|ref|NP_615121.1| - 0.018 14.6 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_32 PF13679.6 gi|20089046|ref|NP_615121.1| - 0.028 14.4 0.1 0.04 13.9 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain FKBP_N_2 PF18023.1 gi|20089046|ref|NP_615121.1| - 0.038 14.1 2.0 0.1 12.7 0.7 1.9 2 0 0 2 2 2 0 BDBT FKBP like N-terminal CheR PF01739.18 gi|20089046|ref|NP_615121.1| - 0.057 12.9 0.2 1.1 8.7 0.0 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Met_10 PF02475.16 gi|20089046|ref|NP_615121.1| - 0.058 13.1 0.0 0.088 12.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein MULE PF10551.9 gi|20089047|ref|NP_615122.1| - 0.0004 20.7 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20089047|ref|NP_615122.1| - 0.069 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20089047|ref|NP_615122.1| - 0.16 12.5 1.7 0.51 10.9 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20089047|ref|NP_615122.1| - 0.19 11.5 1.3 0.58 9.9 1.3 1.8 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20089047|ref|NP_615122.1| - 0.41 10.6 3.0 2 8.4 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger RACo_C_ter PF14574.6 gi|20089048|ref|NP_615123.1| - 1e-70 237.8 0.8 3e-70 236.3 0.8 1.7 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Fer4 PF00037.27 gi|20089048|ref|NP_615123.1| - 2.6e-10 39.7 8.3 2.4e-06 27.1 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20089048|ref|NP_615123.1| - 4e-10 39.3 9.7 3.7e-06 26.8 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Raco_middle PF17651.1 gi|20089048|ref|NP_615123.1| - 4.5e-10 39.5 0.0 9.5e-10 38.4 0.0 1.6 1 1 0 1 1 1 1 RACo middle region Fer4_21 PF14697.6 gi|20089048|ref|NP_615123.1| - 6.3e-09 35.8 9.9 1.2e-08 34.9 9.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20089048|ref|NP_615123.1| - 2.6e-08 34.3 8.2 5.4e-08 33.3 8.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089048|ref|NP_615123.1| - 1.1e-06 28.7 10.4 1.9e-06 27.9 10.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089048|ref|NP_615123.1| - 4.7e-06 26.4 10.0 0.0032 17.5 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20089048|ref|NP_615123.1| - 1.1e-05 26.3 11.0 0.011 16.7 3.3 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|20089048|ref|NP_615123.1| - 1.5e-05 25.0 12.0 4e-05 23.6 12.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20089048|ref|NP_615123.1| - 0.00044 20.7 4.1 0.021 15.3 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089048|ref|NP_615123.1| - 0.0069 17.3 14.8 0.32 12.0 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089048|ref|NP_615123.1| - 0.012 16.0 13.4 0.14 12.7 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089048|ref|NP_615123.1| - 0.014 15.8 10.1 0.038 14.4 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089048|ref|NP_615123.1| - 0.13 12.8 9.0 0.37 11.4 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|20089048|ref|NP_615123.1| - 2.7 8.2 11.0 9.7 6.4 3.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Polysacc_deac_1 PF01522.21 gi|20089049|ref|NP_615124.1| - 0.057 13.3 0.0 0.29 11.0 0.0 2.2 2 1 0 2 2 2 0 Polysaccharide deacetylase NAD_binding_2 PF03446.15 gi|20089050|ref|NP_615125.1| - 0.00083 19.6 0.0 0.0018 18.5 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|20089050|ref|NP_615125.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Mur_ligase PF01225.25 gi|20089050|ref|NP_615125.1| - 0.098 13.0 0.1 1.2 9.5 0.0 2.2 1 1 1 2 2 2 0 Mur ligase family, catalytic domain ATP-grasp_3 PF02655.14 gi|20089051|ref|NP_615126.1| - 1.5e-07 31.6 0.0 2.7e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|20089051|ref|NP_615126.1| - 6.3e-06 26.0 0.0 1.5e-05 24.7 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|20089051|ref|NP_615126.1| - 0.002 17.7 0.0 0.0039 16.7 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|20089051|ref|NP_615126.1| - 0.04 13.7 0.2 0.46 10.2 0.1 2.5 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Radical_SAM PF04055.21 gi|20089052|ref|NP_615127.1| - 6.6e-09 36.4 0.1 1.5e-08 35.2 0.1 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|20089052|ref|NP_615127.1| - 2.5e-05 24.4 0.3 4.5e-05 23.6 0.3 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|20089052|ref|NP_615127.1| - 0.0036 17.6 0.3 0.0059 16.9 0.3 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain BATS PF06968.13 gi|20089052|ref|NP_615127.1| - 0.031 14.4 0.1 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Biotin and Thiamin Synthesis associated domain tRNA-synt_2d PF01409.20 gi|161484944|ref|NP_615128.2| - 8.3e-12 45.1 0.0 1e-08 35.0 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|161484944|ref|NP_615128.2| - 3.3e-09 36.3 0.1 3e-07 29.9 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|161484944|ref|NP_615128.2| - 1.8e-07 30.9 0.0 7.3e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|161484944|ref|NP_615128.2| - 1.9e-05 24.7 0.0 8.3e-05 22.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_His PF13393.6 gi|161484944|ref|NP_615128.2| - 0.15 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase SQHop_cyclase_C PF13243.6 gi|20089054|ref|NP_615129.1| - 4.2e-06 26.1 3.9 7e-05 22.1 0.3 3.1 2 1 1 3 3 3 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|20089054|ref|NP_615129.1| - 0.00051 19.7 3.9 1.3 8.8 0.0 4.3 4 0 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat DUF134 PF02001.16 gi|20089055|ref|NP_615130.1| - 1.1e-17 64.3 0.0 1.4e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|20089055|ref|NP_615130.1| - 3.8e-05 23.3 0.2 6e-05 22.6 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|20089055|ref|NP_615130.1| - 0.00053 19.5 0.2 0.00086 18.8 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|20089055|ref|NP_615130.1| - 0.031 14.2 0.1 0.043 13.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain zf-C4_Topoisom PF01396.19 gi|20089055|ref|NP_615130.1| - 0.14 11.9 0.7 0.14 11.9 0.7 2.5 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger MarR_2 PF12802.7 gi|20089055|ref|NP_615130.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|20089055|ref|NP_615130.1| - 0.18 11.9 0.0 0.18 11.9 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix A2L_zn_ribbon PF08792.10 gi|20089055|ref|NP_615130.1| - 0.2 11.4 5.5 3.9 7.3 0.8 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain HypA PF01155.19 gi|20089055|ref|NP_615130.1| - 3.1 7.9 6.6 2.2 8.3 4.7 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|20089055|ref|NP_615130.1| - 3.9 7.5 6.1 6.9 6.7 6.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|20089055|ref|NP_615130.1| - 6.1 6.9 8.4 14 5.7 8.4 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|20089055|ref|NP_615130.1| - 6.2 6.9 9.3 16 5.6 2.2 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF5320 PF17253.2 gi|20089056|ref|NP_615131.1| - 2.1e-23 83.3 17.1 3.7e-22 79.3 17.1 2.0 1 1 0 1 1 1 1 Family of unknown function (DUF5320) FlxA PF14282.6 gi|20089056|ref|NP_615131.1| - 0.052 13.5 0.7 0.067 13.2 0.7 1.1 1 0 0 1 1 1 0 FlxA-like protein Csm1_N PF18504.1 gi|20089056|ref|NP_615131.1| - 0.11 12.8 1.3 0.14 12.5 1.3 1.1 1 0 0 1 1 1 0 Csm1 N-terminal domain GTP-bdg_M PF16360.5 gi|20089056|ref|NP_615131.1| - 0.75 10.4 3.1 2.2 8.9 3.1 1.8 1 1 0 1 1 1 0 GTP-binding GTPase Middle Region zinc_ribbon_2 PF13240.6 gi|20089057|ref|NP_615132.1| - 0.003 17.2 4.9 0.45 10.3 0.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|20089057|ref|NP_615132.1| - 0.0097 15.7 5.7 0.17 11.7 0.4 2.3 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|20089057|ref|NP_615132.1| - 0.021 14.8 5.9 0.027 14.5 5.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|20089057|ref|NP_615132.1| - 0.098 12.8 4.5 0.42 10.7 0.5 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF5320 PF17253.2 gi|20089057|ref|NP_615132.1| - 0.12 13.4 9.2 0.14 13.2 9.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5320) UPF0547 PF10571.9 gi|20089057|ref|NP_615132.1| - 0.19 11.9 7.5 0.37 10.9 1.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|20089057|ref|NP_615132.1| - 0.4 10.5 5.3 8.4 6.2 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain HypA PF01155.19 gi|20089057|ref|NP_615132.1| - 0.45 10.6 4.8 0.5 10.4 4.8 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADK_lid PF05191.14 gi|20089057|ref|NP_615132.1| - 0.48 10.5 7.2 1.4 9.0 7.2 1.8 1 1 1 2 2 2 0 Adenylate kinase, active site lid zf_UBZ PF18439.1 gi|20089057|ref|NP_615132.1| - 0.72 9.5 5.1 9.7 5.9 0.8 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Auto_anti-p27 PF06677.12 gi|20089057|ref|NP_615132.1| - 0.77 10.0 9.3 0.53 10.5 1.4 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.11 gi|20089057|ref|NP_615132.1| - 1.4 8.9 6.1 1.4 8.9 4.6 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.6 gi|20089057|ref|NP_615132.1| - 1.9 9.1 0.2 1.9 9.1 0.2 2.6 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|20089057|ref|NP_615132.1| - 2.6 8.2 11.3 1.6 8.9 6.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|20089057|ref|NP_615132.1| - 4.9 7.2 10.5 0.82 9.7 1.4 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Radical_SAM PF04055.21 gi|20089058|ref|NP_615133.1| - 1.3e-11 45.1 0.1 4e-11 43.6 0.0 1.8 2 1 1 3 3 3 1 Radical SAM superfamily FliG_N PF14842.6 gi|20089058|ref|NP_615133.1| - 0.00099 19.6 0.5 0.15 12.6 0.1 3.3 3 1 0 3 3 3 1 FliG N-terminal domain Fer4_14 PF13394.6 gi|20089058|ref|NP_615133.1| - 0.023 14.8 0.1 0.14 12.3 0.1 2.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Ferritin PF00210.24 gi|20089059|ref|NP_615134.1| - 9.6e-42 142.3 1.9 1.1e-41 142.1 1.9 1.1 1 0 0 1 1 1 1 Ferritin-like domain EF-G-binding_N PF07299.11 gi|20089059|ref|NP_615134.1| - 0.0091 16.5 1.0 0.019 15.5 1.0 1.5 1 0 0 1 1 1 1 Elongation factor G-binding protein, N-terminal NosL PF05573.12 gi|20089059|ref|NP_615134.1| - 0.036 14.4 0.3 0.063 13.6 0.3 1.4 1 1 0 1 1 1 0 NosL Phage_Integr_2 PF13009.6 gi|20089059|ref|NP_615134.1| - 0.067 12.3 0.1 0.083 12.0 0.1 1.1 1 0 0 1 1 1 0 Putative phage integrase PdaC PF13739.6 gi|20089059|ref|NP_615134.1| - 0.23 12.4 2.2 8.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Deacetylase PdaC Usp PF00582.26 gi|20089060|ref|NP_615135.1| - 2.3e-36 125.4 0.4 2.6e-36 125.2 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|20089060|ref|NP_615135.1| - 0.061 13.3 0.0 0.09 12.8 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase TPR_8 PF13181.6 gi|20089060|ref|NP_615135.1| - 4.5 7.7 5.1 27 5.3 0.3 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TfuA PF07812.12 gi|20089062|ref|NP_615137.1| - 1.7e-46 156.9 0.0 3.1e-46 156.0 0.0 1.4 1 0 0 1 1 1 1 TfuA-like protein YcaO PF02624.16 gi|20089063|ref|NP_615138.1| - 2e-85 286.9 0.0 2.7e-85 286.5 0.0 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding E1-E2_ATPase PF00122.20 gi|20089064|ref|NP_615139.1| - 1.6e-53 181.0 3.1 1.6e-53 181.0 3.1 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|20089064|ref|NP_615139.1| - 4.7e-39 134.9 1.2 5.5e-39 134.6 0.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|20089064|ref|NP_615139.1| - 1e-05 25.4 0.3 0.0018 18.0 0.4 3.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Zip PF02535.22 gi|20089064|ref|NP_615139.1| - 8.2e-05 22.0 0.0 0.00057 19.2 0.0 2.2 1 1 0 1 1 1 1 ZIP Zinc transporter HAD PF12710.7 gi|20089064|ref|NP_615139.1| - 0.045 14.1 0.3 0.13 12.6 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase ProQ_C PF17516.2 gi|20089064|ref|NP_615139.1| - 0.47 9.9 0.0 0.47 9.9 0.0 2.1 3 0 0 3 3 3 0 ProQ C-terminal domain Cytochrom_C PF00034.21 gi|20089065|ref|NP_615140.1| - 1.4e-07 32.5 0.0 2.4e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|20089065|ref|NP_615140.1| - 1.5e-05 25.2 0.0 3.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III PLDc_N PF13396.6 gi|20089066|ref|NP_615141.1| - 5.1e-11 42.3 1.5 5.1e-11 42.3 1.5 1.9 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal HlyIII PF03006.20 gi|20089066|ref|NP_615141.1| - 0.00075 19.3 0.2 0.00089 19.0 0.2 1.1 1 0 0 1 1 1 1 Haemolysin-III related DUF4131 PF13567.6 gi|20089066|ref|NP_615141.1| - 0.014 15.0 0.8 0.017 14.8 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Phage_holin_3_6 PF07332.11 gi|20089066|ref|NP_615141.1| - 0.026 14.5 0.1 0.035 14.2 0.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Sulf_transp PF04143.14 gi|20089066|ref|NP_615141.1| - 0.035 13.7 0.1 0.04 13.5 0.1 1.1 1 0 0 1 1 1 0 Sulphur transport DUF2207 PF09972.9 gi|20089066|ref|NP_615141.1| - 0.051 12.3 0.5 0.052 12.3 0.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TatC PF00902.18 gi|20089066|ref|NP_615141.1| - 0.064 13.1 1.4 0.082 12.7 1.4 1.1 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) DHHC PF01529.20 gi|20089066|ref|NP_615141.1| - 1.7 8.7 5.1 2 8.5 0.3 1.8 1 1 1 2 2 2 0 DHHC palmitoyltransferase Vpu PF00558.19 gi|20089066|ref|NP_615141.1| - 1.9 8.3 4.3 2.1 8.2 2.3 1.8 1 1 1 2 2 2 0 Vpu protein MFS_1 PF07690.16 gi|20089067|ref|NP_615142.1| - 2.8e-45 154.8 36.2 2.8e-45 154.8 36.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|20089067|ref|NP_615142.1| - 5.6e-13 48.5 18.4 7.6e-13 48.1 18.4 1.1 1 0 0 1 1 1 1 MFS_1 like family Mem_trans PF03547.18 gi|20089067|ref|NP_615142.1| - 1.4 7.2 6.1 1.2 7.4 3.1 2.1 1 1 1 2 2 2 0 Membrane transport protein NapE PF06796.11 gi|20089067|ref|NP_615142.1| - 9.6 5.8 7.5 0.82 9.2 1.0 2.6 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE LCM PF04072.14 gi|20089068|ref|NP_615143.1| - 1.1e-39 136.4 0.0 1.4e-39 136.0 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase tRNA-synt_2d PF01409.20 gi|20089069|ref|NP_615144.1| - 3e-89 298.7 0.0 3.9e-89 298.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|20089069|ref|NP_615144.1| - 4.5e-09 36.1 0.0 4.2e-07 29.6 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|20089069|ref|NP_615144.1| - 0.00068 18.8 0.4 0.028 13.5 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_1b PF00579.25 gi|20089070|ref|NP_615145.1| - 6.2e-35 120.9 0.0 5e-18 65.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Polbeta PF18765.1 gi|20089071|ref|NP_615146.1| - 1.2e-18 67.0 0.2 1.7e-18 66.5 0.2 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|20089072|ref|NP_615147.1| - 6e-24 84.2 0.0 6.7e-24 84.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Erp_C PF06780.11 gi|20089072|ref|NP_615147.1| - 0.12 12.4 0.1 0.27 11.3 0.1 1.6 2 0 0 2 2 2 0 Erp protein C-terminus Radical_SAM PF04055.21 gi|20089073|ref|NP_615148.1| - 3.2e-10 40.6 0.1 6.4e-10 39.7 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|20089073|ref|NP_615148.1| - 5.4e-06 26.8 0.0 1e-05 26.0 0.0 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain NAD_binding_2 PF03446.15 gi|20089073|ref|NP_615148.1| - 0.0013 19.0 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase MarR PF01047.22 gi|20089074|ref|NP_615149.1| - 4.2e-11 42.6 0.1 9.8e-11 41.4 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|20089074|ref|NP_615149.1| - 0.0031 17.4 0.0 0.0072 16.2 0.0 1.6 2 0 0 2 2 2 1 MarR family TetR_N PF00440.23 gi|20089076|ref|NP_615151.1| - 3.2e-15 55.7 0.1 5.8e-15 54.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family B12-binding_2 PF02607.17 gi|20089076|ref|NP_615151.1| - 0.033 14.6 0.2 0.12 12.8 0.6 1.7 2 0 0 2 2 2 0 B12 binding domain TBP PF00352.21 gi|20089077|ref|NP_615152.1| - 4.2e-51 170.8 0.2 6.2e-25 87.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|20089077|ref|NP_615152.1| - 0.00011 22.3 0.0 0.079 13.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|20089077|ref|NP_615152.1| - 0.12 12.1 0.0 9 6.0 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S MarR PF01047.22 gi|20089078|ref|NP_615153.1| - 3.9e-13 49.1 0.0 7.8e-13 48.1 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|20089078|ref|NP_615153.1| - 3.2e-10 39.7 0.0 4.3e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20089078|ref|NP_615153.1| - 1.6e-09 38.1 0.0 3e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|20089078|ref|NP_615153.1| - 2.7e-05 24.2 0.0 5.5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|20089078|ref|NP_615153.1| - 0.00063 19.3 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20089078|ref|NP_615153.1| - 0.0013 18.6 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|20089078|ref|NP_615153.1| - 0.0023 18.1 0.0 0.0043 17.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|20089078|ref|NP_615153.1| - 0.0028 18.3 0.0 0.0045 17.6 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_54 PF18607.1 gi|20089078|ref|NP_615153.1| - 0.0032 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 ParA helix turn helix domain HTH_Crp_2 PF13545.6 gi|20089078|ref|NP_615153.1| - 0.0034 17.3 0.0 0.0056 16.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|20089078|ref|NP_615153.1| - 0.0095 15.4 0.1 0.011 15.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_34 PF13601.6 gi|20089078|ref|NP_615153.1| - 0.016 15.4 0.0 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|20089078|ref|NP_615153.1| - 0.038 13.8 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|20089078|ref|NP_615153.1| - 0.042 13.8 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|20089078|ref|NP_615153.1| - 0.058 13.1 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MFS_1 PF07690.16 gi|20089079|ref|NP_615154.1| - 1.5e-55 188.6 34.4 5.6e-51 173.5 30.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|20089079|ref|NP_615154.1| - 5.4e-13 48.2 16.1 6.9e-13 47.8 16.1 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_4 PF06779.14 gi|20089079|ref|NP_615154.1| - 2.1e-06 27.3 21.9 2.7e-06 26.9 21.9 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|20089079|ref|NP_615154.1| - 0.00029 19.3 0.9 0.00029 19.3 0.9 3.3 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|20089079|ref|NP_615154.1| - 1.8 7.3 26.0 98 1.6 26.0 2.1 1 1 0 1 1 1 0 MFS_1 like family eIF-5_eIF-2B PF01873.17 gi|20089080|ref|NP_615155.1| - 3.2e-38 130.2 0.0 4.6e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|20089080|ref|NP_615155.1| - 2.6e-12 46.5 0.8 7.6e-12 45.1 0.8 1.8 1 0 0 1 1 1 1 TRAM domain DUF4265 PF14085.6 gi|20089080|ref|NP_615155.1| - 0.0058 16.6 0.1 0.016 15.1 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4265) Zn-ribbon_8 PF09723.10 gi|20089080|ref|NP_615155.1| - 0.069 13.3 0.4 0.15 12.2 0.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain ZF-HD_dimer PF04770.12 gi|20089080|ref|NP_615155.1| - 0.094 13.1 0.3 0.21 11.9 0.0 1.7 2 0 0 2 2 2 0 ZF-HD protein dimerisation region zf-ribbon_3 PF13248.6 gi|20089080|ref|NP_615155.1| - 0.25 10.8 1.4 8.8 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.18 gi|20089080|ref|NP_615155.1| - 0.43 9.9 0.1 0.43 9.9 0.1 1.7 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF35_N PF12172.8 gi|20089080|ref|NP_615155.1| - 2.6 8.0 4.4 2.2 8.3 0.4 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L16 PF00252.18 gi|20089081|ref|NP_615156.1| - 1.1e-33 116.1 1.0 1.3e-33 115.8 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1786 PF08735.10 gi|20089082|ref|NP_615157.1| - 4e-91 304.8 0.0 4.9e-91 304.5 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) DDR PF08841.10 gi|20089082|ref|NP_615157.1| - 0.013 14.6 0.3 0.058 12.4 0.0 2.1 2 1 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain MFS_1 PF07690.16 gi|20089083|ref|NP_615158.1| - 4.3e-41 141.0 51.1 4.3e-41 141.0 51.1 2.9 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|20089083|ref|NP_615158.1| - 7.9e-08 31.1 13.2 2.5e-05 22.9 2.9 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.24 gi|20089083|ref|NP_615158.1| - 9.5e-06 24.7 11.4 9.5e-06 24.7 11.4 2.9 4 0 0 4 4 4 2 Sugar (and other) transporter OATP PF03137.20 gi|20089083|ref|NP_615158.1| - 2.4 6.3 19.9 0.24 9.6 1.4 3.8 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Cas_Cas02710 PF09670.10 gi|20089084|ref|NP_615159.1| - 0.001 18.0 0.1 0.0015 17.4 0.1 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF4364 PF14277.6 gi|20089084|ref|NP_615159.1| - 0.0024 17.7 0.5 0.12 12.1 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4364) Cas_APE2256 PF09651.10 gi|20089084|ref|NP_615159.1| - 0.0075 16.2 0.2 0.018 14.9 0.0 1.7 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) DUF5603 PF18231.1 gi|20089084|ref|NP_615159.1| - 0.0097 16.2 0.2 0.048 14.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) DUF604 PF04646.12 gi|20089084|ref|NP_615159.1| - 0.023 14.1 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF604 MoCF_biosynth PF00994.24 gi|20089085|ref|NP_615160.1| - 8.1e-35 119.6 0.0 9.6e-35 119.4 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Peptidase_M26_C PF07580.14 gi|20089085|ref|NP_615160.1| - 0.14 10.6 0.0 0.17 10.4 0.0 1.0 1 0 0 1 1 1 0 M26 IgA1-specific Metallo-endopeptidase C-terminal region TPR_12 PF13424.6 gi|20089086|ref|NP_615161.1| - 9.9e-141 458.3 39.6 2.3e-23 82.3 0.3 7.5 3 2 6 9 9 8 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20089086|ref|NP_615161.1| - 1e-105 343.2 9.7 6.8e-14 51.2 0.0 10.9 11 0 0 11 11 10 9 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20089086|ref|NP_615161.1| - 1.3e-56 184.6 17.3 2.5e-06 27.1 0.0 9.9 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20089086|ref|NP_615161.1| - 2.7e-50 166.2 32.5 3e-07 30.0 0.0 9.7 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20089086|ref|NP_615161.1| - 2.6e-36 120.8 35.2 0.00022 21.1 0.3 9.9 10 0 0 10 10 9 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20089086|ref|NP_615161.1| - 8.9e-34 112.9 34.5 4.5e-05 23.3 0.2 10.4 11 0 0 11 11 9 8 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20089086|ref|NP_615161.1| - 5.3e-20 70.3 13.4 0.21 12.1 0.0 10.2 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20089086|ref|NP_615161.1| - 2e-15 56.2 17.6 1 10.4 0.0 10.2 4 3 6 10 10 10 4 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20089086|ref|NP_615161.1| - 1e-14 54.7 13.3 1.5e-05 24.5 1.3 3.6 1 1 3 4 4 4 4 MalT-like TPR region TPR_19 PF14559.6 gi|20089086|ref|NP_615161.1| - 5.1e-14 52.5 16.4 0.018 15.5 0.2 7.1 2 2 2 6 6 6 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20089086|ref|NP_615161.1| - 1.1e-13 50.8 23.4 0.19 12.5 0.5 9.7 9 0 0 9 9 9 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20089086|ref|NP_615161.1| - 1.5e-13 50.7 1.6 0.0054 16.8 0.0 5.6 2 2 2 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20089086|ref|NP_615161.1| - 2.9e-12 47.0 12.7 0.0003 21.4 0.1 7.5 3 2 4 7 7 7 2 Tetratricopeptide repeat SNAP PF14938.6 gi|20089086|ref|NP_615161.1| - 2.5e-11 43.6 0.2 0.019 14.4 0.1 4.5 1 1 1 4 4 4 3 Soluble NSF attachment protein, SNAP MIT PF04212.18 gi|20089086|ref|NP_615161.1| - 2.8e-11 43.3 16.5 0.53 10.4 0.0 8.5 3 2 5 8 8 8 3 MIT (microtubule interacting and transport) domain RPN7 PF10602.9 gi|20089086|ref|NP_615161.1| - 6.2e-10 39.1 14.9 0.22 11.2 0.0 8.6 4 2 5 9 9 8 2 26S proteasome subunit RPN7 DUF2225 PF09986.9 gi|20089086|ref|NP_615161.1| - 9.7e-10 38.5 9.0 0.068 12.9 0.0 6.4 2 1 4 6 6 6 3 Uncharacterized protein conserved in bacteria (DUF2225) ANAPC3 PF12895.7 gi|20089086|ref|NP_615161.1| - 1.2e-09 38.2 14.4 0.51 10.6 0.2 7.8 3 1 6 9 9 8 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|20089086|ref|NP_615161.1| - 2.4e-09 36.7 29.6 0.96 9.2 0.6 9.9 9 1 1 10 10 10 3 TPR repeat TPR_5 PF12688.7 gi|20089086|ref|NP_615161.1| - 2e-07 31.3 0.9 0.58 10.4 0.0 5.7 3 2 1 5 5 5 1 Tetratrico peptide repeat RNA_pol_Rpb6 PF01192.22 gi|20089086|ref|NP_615161.1| - 1.2e-05 25.2 0.4 2 8.4 0.2 6.4 7 1 0 7 7 7 1 RNA polymerase Rpb6 Fis1_TPR_C PF14853.6 gi|20089086|ref|NP_615161.1| - 2e-05 24.6 27.8 0.11 12.5 0.1 8.0 9 0 0 9 9 7 2 Fis1 C-terminal tetratricopeptide repeat Rapsyn_N PF10579.9 gi|20089086|ref|NP_615161.1| - 2e-05 24.6 3.1 9.1 6.5 0.0 6.3 5 1 2 7 7 6 0 Rapsyn N-terminal myristoylation and linker region TPR_4 PF07721.14 gi|20089086|ref|NP_615161.1| - 2.6e-05 24.4 0.1 7 7.6 0.0 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat AAA_16 PF13191.6 gi|20089086|ref|NP_615161.1| - 3.9e-05 24.1 0.0 0.00014 22.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain SHNi-TPR PF10516.9 gi|20089086|ref|NP_615161.1| - 4e-05 23.0 8.1 0.39 10.2 0.0 7.0 8 0 0 8 8 8 1 SHNi-TPR PPR PF01535.20 gi|20089086|ref|NP_615161.1| - 5.8e-05 23.1 2.8 27 5.3 0.0 7.2 6 0 0 6 6 6 0 PPR repeat Tcf25 PF04910.14 gi|20089086|ref|NP_615161.1| - 0.00014 21.0 1.2 6.4 5.7 0.0 5.6 2 2 5 7 7 7 0 Transcriptional repressor TCF25 DUF627 PF04781.12 gi|20089086|ref|NP_615161.1| - 0.00061 19.8 8.1 20 5.3 0.1 6.3 5 4 1 7 7 6 0 Protein of unknown function (DUF627) 14-3-3 PF00244.20 gi|20089086|ref|NP_615161.1| - 0.00076 19.0 8.9 0.047 13.2 0.0 5.8 2 1 1 7 7 7 1 14-3-3 protein DnaGprimase_HBD PF16730.5 gi|20089086|ref|NP_615161.1| - 0.002 18.2 2.3 0.16 12.1 0.2 3.5 3 0 0 3 3 3 1 DnaG-primase C-terminal, helicase-binding domain ATPase_2 PF01637.18 gi|20089086|ref|NP_615161.1| - 0.0049 16.8 0.4 0.037 13.9 0.1 2.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea ANAPC5 PF12862.7 gi|20089086|ref|NP_615161.1| - 0.0065 16.5 2.1 17 5.5 0.5 5.2 2 2 3 5 5 5 0 Anaphase-promoting complex subunit 5 DUF4404 PF14357.6 gi|20089086|ref|NP_615161.1| - 0.0066 17.1 0.4 68 4.2 0.0 5.6 5 0 0 5 5 5 0 Domain of unknown function (DUF4404) Cas_NE0113 PF09623.10 gi|20089086|ref|NP_615161.1| - 0.013 15.2 2.9 15 5.2 0.0 4.9 3 2 1 5 5 5 0 CRISPR-associated protein NE0113 (Cas_NE0113) NACHT PF05729.12 gi|20089086|ref|NP_615161.1| - 0.023 14.6 0.0 3.5 7.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain DUF2753 PF10952.8 gi|20089086|ref|NP_615161.1| - 0.024 14.8 0.1 32 4.7 0.0 4.3 2 1 2 5 5 5 0 Protein of unknown function (DUF2753) AAA_22 PF13401.6 gi|20089086|ref|NP_615161.1| - 0.034 14.4 0.0 0.29 11.4 0.0 2.5 3 0 0 3 3 1 0 AAA domain AAA_24 PF13479.6 gi|20089086|ref|NP_615161.1| - 0.087 12.5 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Wzy_C_2 PF11846.8 gi|20089086|ref|NP_615161.1| - 0.2 11.6 0.8 23 4.8 0.0 3.7 3 1 1 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal BTAD PF03704.17 gi|20089086|ref|NP_615161.1| - 1.6 9.2 3.5 88 3.5 0.0 4.0 3 2 2 5 5 3 0 Bacterial transcriptional activator domain Colicin_immun PF09204.10 gi|20089086|ref|NP_615161.1| - 7.4 7.2 8.8 20 5.8 0.1 4.0 5 0 0 5 5 3 0 Bacterial self-protective colicin-like immunity SNF2_N PF00176.23 gi|20089087|ref|NP_615162.1| - 4e-62 210.0 0.0 5.1e-62 209.6 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.8 gi|20089087|ref|NP_615162.1| - 6.3e-40 136.2 0.6 6.3e-40 136.2 0.6 2.0 2 0 0 2 2 2 1 SNF2 Helicase protein Helicase_C PF00271.31 gi|20089087|ref|NP_615162.1| - 6.9e-18 65.0 0.0 1.8e-17 63.7 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|20089087|ref|NP_615162.1| - 3e-05 24.1 0.0 5.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|20089087|ref|NP_615162.1| - 0.17 11.1 0.0 0.35 10.0 0.0 1.5 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase SWIM PF04434.17 gi|20089088|ref|NP_615163.1| - 5.2e-07 29.2 0.1 9.3e-07 28.4 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF1724 PF08350.10 gi|20089089|ref|NP_615164.1| - 1.1e-19 70.4 0.0 2.1e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.19 gi|20089089|ref|NP_615164.1| - 0.00012 21.9 0.1 0.00022 21.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|20089089|ref|NP_615164.1| - 0.00014 21.6 0.1 0.00025 20.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20089089|ref|NP_615164.1| - 0.016 15.2 0.1 0.034 14.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|20089089|ref|NP_615164.1| - 0.027 14.4 0.1 0.058 13.4 0.1 1.6 1 0 0 1 1 1 0 HTH domain CRS1_YhbY PF01985.21 gi|20089090|ref|NP_615165.1| - 5e-21 74.6 1.3 5.5e-21 74.5 1.3 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain CelTOS PF18659.1 gi|20089090|ref|NP_615165.1| - 0.025 15.0 0.7 0.029 14.8 0.7 1.1 1 0 0 1 1 1 0 Cell-traversal protein for ookinetes and sporozoites DUF4479 PF14794.6 gi|20089090|ref|NP_615165.1| - 0.034 14.0 0.2 0.058 13.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) tRNA-synt_2c PF01411.19 gi|20089092|ref|NP_615167.1| - 1.8e-131 439.4 0.0 2.4e-131 439.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|20089092|ref|NP_615167.1| - 7.8e-21 74.9 0.7 1.7e-20 73.9 0.7 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|20089092|ref|NP_615167.1| - 2.8e-13 49.7 1.5 8.7e-13 48.1 1.5 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Methyltransf_15 PF09445.10 gi|20089093|ref|NP_615168.1| - 2.9e-12 46.5 0.0 5e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|20089093|ref|NP_615168.1| - 2.4e-08 33.9 0.0 4.1e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089093|ref|NP_615168.1| - 2.9e-08 34.3 0.0 5.4e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|20089093|ref|NP_615168.1| - 1e-06 28.3 0.0 1.6e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|20089093|ref|NP_615168.1| - 1.3e-06 28.9 0.0 3.1e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|20089093|ref|NP_615168.1| - 0.00027 20.9 0.0 0.00053 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|20089093|ref|NP_615168.1| - 0.00065 19.5 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein tRNA_U5-meth_tr PF05958.11 gi|20089093|ref|NP_615168.1| - 0.001 18.1 0.0 0.0016 17.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|20089093|ref|NP_615168.1| - 0.0026 17.4 0.0 0.0041 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|20089093|ref|NP_615168.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Peptidase_A25 PF03418.14 gi|20089093|ref|NP_615168.1| - 0.03 13.2 0.0 0.045 12.6 0.0 1.2 1 0 0 1 1 1 0 Germination protease FtsJ PF01728.19 gi|20089093|ref|NP_615168.1| - 0.035 14.2 0.0 0.063 13.4 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase CmcI PF04989.12 gi|20089093|ref|NP_615168.1| - 0.061 13.0 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase DNA_methylase PF00145.17 gi|20089093|ref|NP_615168.1| - 0.072 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.15 gi|20089093|ref|NP_615168.1| - 0.08 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PCMT PF01135.19 gi|20089093|ref|NP_615168.1| - 0.098 12.4 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0242 PF06785.11 gi|20089094|ref|NP_615169.1| - 7.4 6.6 6.0 10 6.2 6.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Acetyltransf_1 PF00583.25 gi|20089096|ref|NP_615171.1| - 1.1e-11 45.0 0.0 1.3e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20089096|ref|NP_615171.1| - 8.7e-09 35.7 0.0 1.3e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20089096|ref|NP_615171.1| - 3e-07 30.6 0.0 3.9e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20089096|ref|NP_615171.1| - 6.1e-07 29.4 0.0 7.6e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20089096|ref|NP_615171.1| - 0.0075 16.4 0.0 0.0096 16.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|20089096|ref|NP_615171.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|20089096|ref|NP_615171.1| - 0.014 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_3 PF13302.7 gi|20089096|ref|NP_615171.1| - 0.047 14.4 0.0 0.064 13.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF5006 PF16397.5 gi|20089096|ref|NP_615171.1| - 0.082 12.1 0.0 0.089 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5006) Acetyltransf_15 PF17013.5 gi|20089096|ref|NP_615171.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase FR47 PF08445.10 gi|20089096|ref|NP_615171.1| - 0.16 11.9 0.0 0.35 10.9 0.0 1.5 1 1 0 1 1 1 0 FR47-like protein LolA_like PF17131.4 gi|20089097|ref|NP_615172.1| - 3.9e-13 49.5 1.0 3.9e-13 49.5 1.0 2.1 2 1 0 2 2 2 1 Outer membrane lipoprotein-sorting protein LolA PF03548.15 gi|20089097|ref|NP_615172.1| - 5.6e-09 35.9 0.6 1.3e-08 34.7 0.6 1.5 1 1 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF4367 PF14285.6 gi|20089097|ref|NP_615172.1| - 7.8e-09 36.0 1.9 7.8e-09 36.0 1.9 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) MucB_RseB PF03888.14 gi|20089097|ref|NP_615172.1| - 6.7e-07 29.0 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 MucB/RseB N-terminal domain DUF2092 PF09865.9 gi|20089097|ref|NP_615172.1| - 1.7e-06 27.6 0.8 0.018 14.4 0.0 2.3 2 0 0 2 2 2 2 Predicted periplasmic protein (DUF2092) DUF1571 PF07608.11 gi|20089097|ref|NP_615172.1| - 9e-06 25.3 0.8 2.5e-05 23.8 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1571) DUF4245 PF14030.6 gi|20089097|ref|NP_615172.1| - 0.097 12.7 0.0 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) DUF190 PF02641.15 gi|20089098|ref|NP_615173.1| - 1.7e-36 124.4 0.2 1.9e-36 124.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 DUF3103 PF11301.8 gi|20089098|ref|NP_615173.1| - 0.03 13.1 0.0 0.037 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) Iso_dh PF00180.20 gi|20089099|ref|NP_615174.1| - 1.8e-94 316.8 0.0 2e-94 316.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2213 PF09979.9 gi|20089099|ref|NP_615174.1| - 0.13 12.3 0.1 0.22 11.5 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2213) Aconitase_C PF00694.19 gi|20089100|ref|NP_615175.1| - 3e-18 66.4 0.0 4.7e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|20089100|ref|NP_615175.1| - 0.017 14.7 0.2 0.19 11.4 0.1 2.0 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus PAS_4 PF08448.10 gi|20089101|ref|NP_615176.1| - 6.9e-65 216.2 0.0 1.2e-13 51.3 0.0 5.7 6 0 0 6 6 5 5 PAS fold PAS_9 PF13426.7 gi|20089101|ref|NP_615176.1| - 5.7e-59 196.8 0.3 9.1e-16 58.0 0.0 6.4 6 0 0 6 6 6 5 PAS domain PAS PF00989.25 gi|20089101|ref|NP_615176.1| - 9.4e-55 183.5 0.0 1.6e-17 63.5 0.0 5.9 5 0 0 5 5 5 5 PAS fold MEDS PF14417.6 gi|20089101|ref|NP_615176.1| - 2.2e-44 151.1 0.0 6.7e-44 149.6 0.0 1.9 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_3 PF08447.12 gi|20089101|ref|NP_615176.1| - 3.8e-40 136.1 0.0 1.8e-18 66.6 0.0 6.3 5 0 0 5 5 5 5 PAS fold HisKA_2 PF07568.12 gi|20089101|ref|NP_615176.1| - 7.6e-31 106.0 2.0 1.4e-30 105.2 0.7 2.3 2 0 0 2 2 1 1 Histidine kinase PAS_8 PF13188.7 gi|20089101|ref|NP_615176.1| - 1.3e-30 104.8 0.0 4.1e-07 29.9 0.0 5.2 5 0 0 5 5 5 4 PAS domain GAF_2 PF13185.6 gi|20089101|ref|NP_615176.1| - 3.8e-19 69.3 0.0 9.3e-19 68.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.6 gi|20089101|ref|NP_615176.1| - 1.6e-10 41.5 0.0 0.0012 19.5 0.0 5.0 4 1 0 4 4 4 2 PAS domain HATPase_c PF02518.26 gi|20089101|ref|NP_615176.1| - 5.8e-08 33.2 0.1 2.8e-07 31.0 0.1 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|20089101|ref|NP_615176.1| - 7.3e-06 26.6 0.0 2.4e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|20089101|ref|NP_615176.1| - 7.2e-05 22.9 5.2 24 5.1 0.0 6.8 6 1 0 6 6 6 0 PAS fold HATPase_c_2 PF13581.6 gi|20089101|ref|NP_615176.1| - 0.0031 17.5 0.0 0.0078 16.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20089101|ref|NP_615176.1| - 0.018 15.7 3.9 0.027 15.2 0.1 2.9 3 0 0 3 3 2 0 HWE histidine kinase GAF_3 PF13492.6 gi|20089101|ref|NP_615176.1| - 0.059 13.7 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 0 GAF domain DUF5344 PF17279.2 gi|20089101|ref|NP_615176.1| - 0.072 13.7 3.4 0.24 12.0 2.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5344) PSK_trans_fac PF07704.11 gi|20089101|ref|NP_615176.1| - 9.6 7.0 8.7 6.7 7.5 5.0 2.8 2 0 0 2 2 1 0 Rv0623-like transcription factor DUF87 PF01935.17 gi|20089102|ref|NP_615177.1| - 2.1e-09 37.8 0.0 3.9e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|20089102|ref|NP_615177.1| - 0.00069 19.0 0.0 1.3 8.3 0.0 2.8 2 1 0 3 3 3 2 FtsK/SpoIIIE family DUF853 PF05872.12 gi|20089102|ref|NP_615177.1| - 0.02 13.5 0.0 0.044 12.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Zot PF05707.12 gi|20089102|ref|NP_615177.1| - 0.03 14.0 0.0 0.081 12.6 0.0 1.7 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) TFIIE_beta PF02186.15 gi|20089102|ref|NP_615177.1| - 0.089 13.1 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 TFIIE beta subunit core domain AAA_10 PF12846.7 gi|20089102|ref|NP_615177.1| - 0.093 11.6 0.0 8.8 5.1 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.29 gi|20089102|ref|NP_615177.1| - 0.1 13.0 0.0 2.6 8.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1724 PF08350.10 gi|20089103|ref|NP_615178.1| - 1.5e-20 73.0 0.4 3.6e-20 71.8 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089103|ref|NP_615178.1| - 0.047 13.6 0.1 0.078 12.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1297 PF06973.12 gi|20089104|ref|NP_615179.1| - 5.1e-56 189.2 0.1 7.1e-56 188.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|20089104|ref|NP_615179.1| - 4.6e-45 152.5 0.0 9.6e-45 151.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|20089104|ref|NP_615179.1| - 0.0034 16.9 0.0 0.0061 16.1 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|20089104|ref|NP_615179.1| - 0.0083 16.2 0.0 0.035 14.1 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain DUF4895 PF16236.5 gi|20089104|ref|NP_615179.1| - 0.024 14.4 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4895) HTH_20 PF12840.7 gi|20089105|ref|NP_615180.1| - 4.4e-10 39.5 0.0 1e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20089105|ref|NP_615180.1| - 4e-06 26.3 0.3 4e-06 26.3 0.3 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.11 gi|20089105|ref|NP_615180.1| - 4.5e-05 23.2 0.0 9.2e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_5 PF01022.20 gi|20089105|ref|NP_615180.1| - 0.00011 21.9 0.3 0.00023 21.0 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|20089105|ref|NP_615180.1| - 0.00055 19.8 0.4 0.0015 18.4 0.4 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Dimerisation2 PF16864.5 gi|20089105|ref|NP_615180.1| - 0.021 14.8 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain HTH_IclR PF09339.10 gi|20089105|ref|NP_615180.1| - 0.028 14.2 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20089105|ref|NP_615180.1| - 0.036 14.0 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|20089105|ref|NP_615180.1| - 0.04 13.8 0.6 0.076 12.9 0.6 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.6 gi|20089105|ref|NP_615180.1| - 0.069 13.1 1.0 0.14 12.1 1.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_40 PF14493.6 gi|20089105|ref|NP_615180.1| - 0.1 13.0 0.6 0.26 11.8 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain PseudoU_synth_1 PF01416.20 gi|20089106|ref|NP_615181.1| - 2.7e-29 101.8 0.0 4e-22 78.7 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase UPF0020 PF01170.18 gi|20089107|ref|NP_615182.1| - 4.7e-28 98.2 0.0 1.8e-27 96.4 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|20089107|ref|NP_615182.1| - 3.5e-13 49.9 0.1 1.2e-12 48.1 0.1 1.8 2 0 0 2 2 2 1 THUMP domain N6_N4_Mtase PF01555.18 gi|20089107|ref|NP_615182.1| - 3.9e-09 36.6 0.0 0.0022 17.8 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.12 gi|20089107|ref|NP_615182.1| - 1.7e-08 35.0 0.0 8.2e-08 32.8 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089107|ref|NP_615182.1| - 1.8e-08 34.9 0.0 6.2e-08 33.3 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089107|ref|NP_615182.1| - 2.1e-07 30.9 0.0 4.4e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|20089107|ref|NP_615182.1| - 7.3e-05 22.3 0.0 0.019 14.5 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Cons_hypoth95 PF03602.15 gi|20089107|ref|NP_615182.1| - 0.00029 20.5 0.0 0.00046 19.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|20089107|ref|NP_615182.1| - 0.0005 19.7 0.0 0.0009 18.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|20089107|ref|NP_615182.1| - 0.0081 15.5 0.0 0.03 13.7 0.0 1.8 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.16 gi|20089107|ref|NP_615182.1| - 0.011 15.0 0.0 0.035 13.4 0.0 1.7 1 1 0 1 1 1 0 N-6 DNA Methylase MTS PF05175.14 gi|20089107|ref|NP_615182.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Mtf2_C PF14061.6 gi|20089107|ref|NP_615182.1| - 0.044 14.0 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 Polycomb-like MTF2 factor 2 NNMT_PNMT_TEMT PF01234.17 gi|20089107|ref|NP_615182.1| - 0.12 11.5 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_8 PF05148.15 gi|20089107|ref|NP_615182.1| - 0.13 12.1 0.0 0.4 10.5 0.0 1.7 2 1 0 2 2 2 0 Hypothetical methyltransferase DUF1805 PF08827.11 gi|20089108|ref|NP_615183.1| - 1.3e-25 89.5 0.8 1.7e-25 89.1 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Peptidase_M24 PF00557.24 gi|20089110|ref|NP_615185.1| - 9.4e-44 149.6 0.0 1.1e-43 149.4 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|20089111|ref|NP_615186.1| - 3.2e-46 157.7 0.3 4.9e-46 157.0 0.3 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Endonuc-BglII PF09195.11 gi|20089111|ref|NP_615186.1| - 0.063 13.1 0.0 0.98 9.2 0.0 2.3 2 1 0 2 2 2 0 Restriction endonuclease BglII DUF2452 PF10504.9 gi|20089111|ref|NP_615186.1| - 0.08 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) BSMAP PF12280.8 gi|20089111|ref|NP_615186.1| - 0.19 12.0 0.0 0.3 11.3 0.0 1.3 1 0 0 1 1 1 0 Brain specific membrane anchored protein Inhibitor_I42 PF09394.10 gi|20089113|ref|NP_615188.1| - 2.6e-20 72.6 0.1 3.2e-20 72.3 0.1 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DUF620 PF04788.12 gi|20089113|ref|NP_615188.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF620) AdoMet_Synthase PF01941.19 gi|20089114|ref|NP_615189.1| - 1.4e-178 593.7 1.3 1.6e-178 593.5 1.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.18 gi|20089115|ref|NP_615190.1| - 2.5e-51 173.8 0.6 3.6e-51 173.3 0.6 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|20089115|ref|NP_615190.1| - 8.6e-27 93.1 0.2 2.1e-26 91.9 0.2 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|20089115|ref|NP_615190.1| - 1.7e-06 28.1 0.1 5.8e-05 23.1 0.1 2.4 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|20089115|ref|NP_615190.1| - 0.0022 17.5 0.0 0.0061 16.0 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF881 PF05949.12 gi|20089115|ref|NP_615190.1| - 0.02 14.8 0.1 1.2 9.0 0.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF881) DUF4665 PF15679.5 gi|20089115|ref|NP_615190.1| - 0.069 13.8 0.3 0.13 12.9 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4665) His_biosynth PF00977.21 gi|20089116|ref|NP_615191.1| - 1.4e-77 260.2 0.2 1.6e-77 260.0 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|20089116|ref|NP_615191.1| - 6.8e-11 41.8 0.0 9.6e-05 21.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|20089116|ref|NP_615191.1| - 9e-09 34.9 0.4 4.4e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase NMO PF03060.15 gi|20089116|ref|NP_615191.1| - 2.9e-07 30.2 2.0 8.6e-06 25.4 0.2 2.1 1 1 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|20089116|ref|NP_615191.1| - 2.5e-06 26.8 0.1 0.036 13.3 0.0 2.1 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|20089116|ref|NP_615191.1| - 2.1e-05 23.7 0.2 0.085 11.8 0.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|20089116|ref|NP_615191.1| - 3.3e-05 23.3 0.7 0.13 11.6 0.0 2.4 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|20089116|ref|NP_615191.1| - 3.4e-05 23.4 0.2 0.008 15.7 0.0 2.1 2 0 0 2 2 2 2 PcrB family TMP-TENI PF02581.17 gi|20089116|ref|NP_615191.1| - 4.3e-05 22.9 0.9 0.00051 19.4 0.1 2.4 1 1 0 2 2 2 1 Thiamine monophosphate synthase IGPS PF00218.21 gi|20089116|ref|NP_615191.1| - 0.00014 21.2 0.2 0.0084 15.3 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|20089116|ref|NP_615191.1| - 0.0007 18.7 0.2 0.27 10.2 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase G3P_antiterm PF04309.12 gi|20089116|ref|NP_615191.1| - 0.0018 17.7 0.8 0.046 13.1 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|20089116|ref|NP_615191.1| - 0.0032 16.4 0.6 0.065 12.1 0.1 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain DUF561 PF04481.12 gi|20089116|ref|NP_615191.1| - 0.0032 16.7 0.2 0.0057 15.9 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF561) IGPD PF00475.18 gi|20089117|ref|NP_615192.1| - 2.9e-62 209.3 1.2 3.6e-62 208.9 1.2 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase FdhD-NarQ PF02634.15 gi|20089118|ref|NP_615193.1| - 8.8e-49 166.3 0.1 3.2e-39 135.0 0.2 2.0 1 1 1 2 2 2 2 FdhD/NarQ family LAP1C PF05609.12 gi|20089119|ref|NP_615194.1| - 0.065 12.3 1.1 1.1 8.3 0.1 2.3 2 0 0 2 2 2 0 Lamina-associated polypeptide 1C (LAP1C) FAM163 PF15069.6 gi|20089119|ref|NP_615194.1| - 0.13 12.7 0.0 0.49 10.8 0.0 2.0 2 0 0 2 2 2 0 FAM163 family Pilin_N PF07790.11 gi|20089121|ref|NP_615196.1| - 1.1e-19 71.1 0.8 2.6e-19 69.9 0.8 1.7 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal WRNPLPNID PF15017.6 gi|20089121|ref|NP_615196.1| - 0.064 14.1 0.2 0.064 14.1 0.2 1.9 2 0 0 2 2 2 0 Putative WW-binding domain and destruction box Helicase_C PF00271.31 gi|20089121|ref|NP_615196.1| - 0.14 12.5 0.7 0.94 9.8 0.7 2.2 1 1 0 1 1 1 0 Helicase conserved C-terminal domain Arch_flagellin PF01917.16 gi|20089121|ref|NP_615196.1| - 0.55 10.4 5.6 1.9 8.6 5.6 2.0 1 1 0 1 1 1 0 Archaebacterial flagellin Pilin_N PF07790.11 gi|20089122|ref|NP_615197.1| - 1.4e-23 83.6 3.1 1.9e-23 83.2 0.6 2.0 1 1 0 2 2 2 1 Archaeal Type IV pilin, N-terminal TRAM PF01938.20 gi|20089122|ref|NP_615197.1| - 0.11 12.5 0.1 0.26 11.3 0.1 1.8 1 1 0 1 1 1 0 TRAM domain Pilin_N PF07790.11 gi|20089123|ref|NP_615198.1| - 1e-13 52.0 0.2 2.3e-13 50.9 0.2 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF1670 PF07900.11 gi|20089125|ref|NP_615200.1| - 2.5e-98 327.8 3.6 2.9e-98 327.6 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20089125|ref|NP_615200.1| - 1.9e-05 24.3 0.1 0.19 11.6 0.0 4.0 3 1 1 4 4 4 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20089125|ref|NP_615200.1| - 8.5e-05 22.2 0.5 2.7 7.7 0.1 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_5 PF01022.20 gi|20089125|ref|NP_615200.1| - 0.00034 20.4 0.5 0.033 14.1 0.1 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|20089125|ref|NP_615200.1| - 0.00056 20.0 0.1 0.96 9.7 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|20089125|ref|NP_615200.1| - 0.0017 17.8 0.0 9.5 5.9 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.12 gi|20089125|ref|NP_615200.1| - 0.002 18.0 0.4 0.024 14.5 0.3 2.6 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 gi|20089125|ref|NP_615200.1| - 0.0021 18.0 0.1 0.58 10.2 0.0 3.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|20089125|ref|NP_615200.1| - 0.0083 16.1 0.1 20 5.3 0.0 3.2 2 1 1 3 3 3 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|20089125|ref|NP_615200.1| - 0.013 15.7 0.7 4.4 7.6 0.3 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|20089125|ref|NP_615200.1| - 0.014 15.4 0.3 6.5 6.8 0.1 2.9 3 0 0 3 3 3 0 HTH domain Phage_terminase PF10668.9 gi|20089125|ref|NP_615200.1| - 0.041 13.9 0.4 14 5.8 0.0 2.5 2 0 0 2 2 2 0 Phage terminase small subunit HTH_10 PF04967.12 gi|20089125|ref|NP_615200.1| - 0.11 12.3 0.1 1.6 8.6 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Tnp_4 PF13613.6 gi|20089125|ref|NP_615200.1| - 0.15 11.8 0.0 0.44 10.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease DUF1670 PF07900.11 gi|20089126|ref|NP_615201.1| - 1.4e-87 292.7 0.2 1.7e-87 292.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20089126|ref|NP_615201.1| - 2.7e-06 27.3 0.1 0.00067 19.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|20089126|ref|NP_615201.1| - 0.00075 19.6 0.1 0.15 12.2 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|20089126|ref|NP_615201.1| - 0.00097 18.9 0.0 5.3 7.0 0.0 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_24 PF13412.6 gi|20089126|ref|NP_615201.1| - 0.0011 18.5 0.1 0.0063 16.0 0.2 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|20089126|ref|NP_615201.1| - 0.0015 18.4 0.4 0.0071 16.3 0.1 2.2 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|20089126|ref|NP_615201.1| - 0.0017 18.3 0.1 0.71 9.9 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix Terminase_5 PF06056.12 gi|20089126|ref|NP_615201.1| - 0.0073 16.2 0.4 1.6 8.7 0.1 3.3 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 gi|20089126|ref|NP_615201.1| - 0.0082 16.1 0.1 0.019 14.9 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|20089126|ref|NP_615201.1| - 0.017 14.9 0.7 0.078 12.8 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20089126|ref|NP_615201.1| - 0.03 14.0 1.5 8.7 6.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.22 gi|20089126|ref|NP_615201.1| - 0.048 13.6 0.2 0.14 12.1 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|20089126|ref|NP_615201.1| - 0.064 13.3 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20089126|ref|NP_615201.1| - 0.065 13.1 0.0 3.3 7.7 0.0 2.3 2 0 0 2 2 2 0 MarR family TENA_THI-4 PF03070.16 gi|20089126|ref|NP_615201.1| - 0.068 13.0 0.1 1.6 8.5 0.1 2.2 2 0 0 2 2 2 0 TENA/THI-4/PQQC family HTH_5 PF01022.20 gi|20089126|ref|NP_615201.1| - 0.12 12.2 0.1 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Trp_repressor PF01371.19 gi|20089126|ref|NP_615201.1| - 0.16 12.1 1.1 7.4 6.8 0.1 2.8 2 1 0 3 3 3 0 Trp repressor protein CHB_HEX_C PF03174.13 gi|20089127|ref|NP_615202.1| - 0.0075 16.2 1.3 0.021 14.8 0.1 2.3 3 0 0 3 3 3 1 Chitobiase/beta-hexosaminidase C-terminal domain Pilin_N PF07790.11 gi|20089128|ref|NP_615203.1| - 3.8e-20 72.6 0.9 3.8e-20 72.6 0.9 1.9 2 1 0 2 2 2 1 Archaeal Type IV pilin, N-terminal HTH_52 PF18576.1 gi|20089128|ref|NP_615203.1| - 0.025 14.8 0.0 0.078 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Pilin_N PF07790.11 gi|20089130|ref|NP_615205.1| - 6e-19 68.7 0.1 8.7e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal T2SSF PF00482.23 gi|20089131|ref|NP_615206.1| - 4.8e-40 136.4 2.4 1.1e-22 80.3 0.0 4.7 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F 7tm_1 PF00001.21 gi|20089131|ref|NP_615206.1| - 0.0069 15.7 1.8 0.14 11.5 1.8 2.9 1 1 0 1 1 1 1 7 transmembrane receptor (rhodopsin family) Pex24p PF06398.11 gi|20089131|ref|NP_615206.1| - 0.012 14.6 10.9 0.3 10.0 0.2 2.9 1 1 1 2 2 2 0 Integral peroxisomal membrane peroxin DUF3169 PF11368.8 gi|20089131|ref|NP_615206.1| - 0.098 12.2 19.5 0.049 13.1 4.6 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3169) DUF2207 PF09972.9 gi|20089131|ref|NP_615206.1| - 0.77 8.4 20.5 0.99 8.1 1.2 3.7 2 1 1 3 3 3 0 Predicted membrane protein (DUF2207) FA_desaturase PF00487.24 gi|20089131|ref|NP_615206.1| - 2.5 7.8 7.8 3.6 7.3 0.4 3.6 4 0 0 4 4 4 0 Fatty acid desaturase T2SSE PF00437.20 gi|20089132|ref|NP_615207.1| - 1.9e-44 151.8 0.0 3e-44 151.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|20089132|ref|NP_615207.1| - 0.013 15.2 0.3 0.062 13.0 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|20089132|ref|NP_615207.1| - 0.074 12.6 0.3 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|20089132|ref|NP_615207.1| - 0.16 11.2 0.0 2.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin ATPase PF06745.13 gi|20089133|ref|NP_615208.1| - 1.1e-13 51.1 0.0 1.3e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 KaiC Aminotran_5 PF00266.19 gi|20089134|ref|NP_615209.1| - 1.9e-126 421.9 0.0 2.2e-126 421.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|20089134|ref|NP_615209.1| - 4.6e-09 36.0 0.0 6.8e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|20089134|ref|NP_615209.1| - 9.5e-08 31.0 0.0 1.5e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|20089134|ref|NP_615209.1| - 2.4e-05 23.8 0.0 2.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase S_100 PF01023.19 gi|20089134|ref|NP_615209.1| - 0.041 13.6 0.0 0.094 12.4 0.0 1.6 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain DUF531 PF04407.12 gi|20089136|ref|NP_615211.1| - 4.3e-81 271.0 0.0 4.9e-81 270.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Acetyltransf_1 PF00583.25 gi|20089137|ref|NP_615212.1| - 2.1e-16 60.2 0.0 2.8e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20089137|ref|NP_615212.1| - 2.8e-15 56.4 0.0 3.7e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20089137|ref|NP_615212.1| - 3.3e-15 56.2 0.0 4.7e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20089137|ref|NP_615212.1| - 3.6e-07 30.3 0.0 4.2e-06 26.9 0.0 2.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20089137|ref|NP_615212.1| - 3.2e-06 27.0 0.0 4.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|20089137|ref|NP_615212.1| - 2.8e-05 24.3 0.0 0.0014 18.8 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20089137|ref|NP_615212.1| - 0.00027 21.0 0.0 0.00039 20.5 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|20089137|ref|NP_615212.1| - 0.011 16.4 0.0 0.027 15.1 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|20089137|ref|NP_615212.1| - 0.033 13.7 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_13 PF13880.6 gi|20089137|ref|NP_615212.1| - 0.083 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|20089137|ref|NP_615212.1| - 0.16 11.7 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ GNAT_acetyltr_2 PF13718.6 gi|20089137|ref|NP_615212.1| - 0.17 11.3 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 NAD_synthase PF02540.17 gi|20089138|ref|NP_615213.1| - 1.4e-06 27.6 0.0 3.1e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|20089138|ref|NP_615213.1| - 2.9e-06 27.2 0.1 6.4e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|20089138|ref|NP_615213.1| - 6.8e-06 25.7 0.1 0.00016 21.3 0.0 2.6 2 1 0 3 3 3 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|20089138|ref|NP_615213.1| - 0.00018 20.4 0.0 0.19 10.5 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.14 gi|20089138|ref|NP_615213.1| - 0.00026 20.6 0.0 0.00096 18.8 0.0 1.9 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|20089138|ref|NP_615213.1| - 0.00028 20.7 0.0 0.0026 17.6 0.0 2.2 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|20089138|ref|NP_615213.1| - 0.0025 17.1 0.0 0.023 14.0 0.0 2.0 1 1 0 1 1 1 1 Arginosuccinate synthase PUB PF09409.10 gi|20089138|ref|NP_615213.1| - 0.015 15.2 0.2 4.1 7.4 0.0 3.0 2 1 1 3 3 3 0 PUB domain PAPS_reduct PF01507.19 gi|20089138|ref|NP_615213.1| - 0.027 14.5 0.0 0.33 11.0 0.0 2.2 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family SpoIIIAH PF12685.7 gi|20089138|ref|NP_615213.1| - 0.084 12.7 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein PGM_PMM_I PF02878.16 gi|20089139|ref|NP_615214.1| - 5.6e-42 142.7 0.0 2.2e-41 140.8 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|20089139|ref|NP_615214.1| - 7.7e-29 100.3 0.0 2.1e-28 98.9 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|20089139|ref|NP_615214.1| - 7.5e-27 93.8 0.1 1.4e-26 92.9 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|20089139|ref|NP_615214.1| - 2.9e-12 46.6 0.1 1.5e-11 44.3 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Radical_SAM PF04055.21 gi|20089140|ref|NP_615215.1| - 1.9e-25 90.2 0.2 6.5e-24 85.2 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|20089140|ref|NP_615215.1| - 3.6e-11 43.2 0.0 1.5e-10 41.1 0.0 2.0 2 0 0 2 2 2 1 B12 binding domain Peptidase_M50 PF02163.22 gi|20089141|ref|NP_615216.1| - 1.3e-11 44.2 12.6 2.2e-07 30.4 0.7 2.5 1 1 1 2 2 2 2 Peptidase family M50 DUF126 PF01989.16 gi|20089142|ref|NP_615217.1| - 5.7e-36 122.2 0.8 9.3e-36 121.5 0.8 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|20089143|ref|NP_615218.1| - 8e-156 518.8 0.1 9e-156 518.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|20089144|ref|NP_615219.1| - 4.9e-116 387.9 1.7 5.5e-116 387.8 1.7 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HTH_Crp_2 PF13545.6 gi|20089144|ref|NP_615219.1| - 0.017 15.1 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain VWA PF00092.28 gi|20089145|ref|NP_615220.1| - 3.9e-22 79.3 0.1 6.9e-22 78.5 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|20089145|ref|NP_615220.1| - 8.3e-14 52.1 0.1 1.7e-13 51.2 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|20089145|ref|NP_615220.1| - 2.8e-08 33.8 0.0 1.9e-07 31.1 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain HYR PF02494.16 gi|20089145|ref|NP_615220.1| - 0.023 15.0 1.1 0.63 10.4 0.1 3.4 3 0 0 3 3 3 0 HYR domain DUF5011 PF16403.5 gi|20089145|ref|NP_615220.1| - 0.027 14.6 0.8 0.19 11.9 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5011) Copine PF07002.16 gi|20089145|ref|NP_615220.1| - 0.11 11.9 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Copine Cadherin-like PF12733.7 gi|20089145|ref|NP_615220.1| - 0.16 12.5 0.2 0.16 12.5 0.2 4.2 4 2 0 4 4 4 0 Cadherin-like beta sandwich domain Citrate_synt PF00285.21 gi|20089147|ref|NP_615222.1| - 7.8e-117 390.4 0.0 8.7e-117 390.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Aconitase PF00330.20 gi|161484943|ref|NP_615223.2| - 7.2e-179 595.6 0.0 9.2e-179 595.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|161484943|ref|NP_615223.2| - 1.3e-39 135.5 0.0 3.3e-39 134.2 0.0 1.7 1 0 0 1 1 1 1 Aconitase C-terminal domain NPCBM_assoc PF10633.9 gi|20089149|ref|NP_615224.1| - 4.5e-09 36.4 3.2 0.0025 18.0 0.0 5.0 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.12 gi|20089149|ref|NP_615224.1| - 3.1e-07 30.5 0.1 0.0058 16.7 0.1 3.6 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF916) DUF11 PF01345.18 gi|20089149|ref|NP_615224.1| - 0.004 17.4 2.9 17 5.8 0.2 4.6 3 2 0 3 3 3 1 Domain of unknown function DUF11 DUF4832 PF16116.5 gi|20089149|ref|NP_615224.1| - 0.0067 16.3 0.0 1.4 8.8 0.0 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4832) FixG_C PF11614.8 gi|20089149|ref|NP_615224.1| - 0.012 15.9 0.0 0.21 11.8 0.0 2.6 2 1 0 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase BsuPI PF12690.7 gi|20089149|ref|NP_615224.1| - 0.027 14.5 0.1 4 7.5 0.0 3.8 4 1 0 4 4 4 0 Intracellular proteinase inhibitor DUF4625 PF15418.6 gi|20089149|ref|NP_615224.1| - 0.029 14.6 0.1 0.51 10.6 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4625) DUF1775 PF07987.11 gi|20089149|ref|NP_615224.1| - 0.13 12.5 0.0 21 5.3 0.0 2.6 2 1 0 2 2 2 0 Domain of unkown function (DUF1775) Inhibitor_I42 PF09394.10 gi|20089149|ref|NP_615224.1| - 1.4 9.3 4.2 21 5.6 0.0 3.3 4 0 0 4 4 4 0 Chagasin family peptidase inhibitor I42 Mfa_like_1 PF13149.6 gi|20089149|ref|NP_615224.1| - 1.8 8.5 10.0 1.2 9.1 1.0 3.5 2 2 1 3 3 3 0 Fimbrillin-like Arg_decarb_HB PF17810.1 gi|20089150|ref|NP_615225.1| - 0.092 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Arginine decarboxylase helical bundle domain CdiI_2 PF18593.1 gi|20089150|ref|NP_615225.1| - 0.095 13.4 0.1 0.26 12.0 0.0 1.7 2 0 0 2 2 2 0 CdiI immunity protein FliT PF05400.13 gi|20089150|ref|NP_615225.1| - 0.19 12.5 0.5 0.55 11.1 0.5 1.7 1 0 0 1 1 1 0 Flagellar protein FliT VWA_2 PF13519.6 gi|20089151|ref|NP_615226.1| - 4.2e-12 46.7 0.1 1.8e-11 44.7 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|20089151|ref|NP_615226.1| - 7.8e-08 32.0 0.0 1.7e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|20089151|ref|NP_615226.1| - 1.8e-07 31.5 0.0 7.1e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|20089151|ref|NP_615226.1| - 1.3e-06 28.5 0.0 2.5e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain TetR_C_16 PF17920.1 gi|20089151|ref|NP_615226.1| - 0.024 14.9 1.1 0.19 12.0 0.2 2.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain CobT_C PF11775.8 gi|20089151|ref|NP_615226.1| - 0.026 14.2 0.1 0.072 12.7 0.1 1.7 1 1 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain DUF2201 PF09967.9 gi|20089151|ref|NP_615226.1| - 0.026 14.7 0.0 0.056 13.6 0.0 1.6 1 0 0 1 1 1 0 VWA-like domain (DUF2201) PRD_Mga PF08270.11 gi|20089151|ref|NP_615226.1| - 0.027 14.1 0.1 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) PRD domain AAA_5 PF07728.14 gi|20089152|ref|NP_615227.1| - 1.3e-28 99.8 0.0 2.2e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|20089152|ref|NP_615227.1| - 1.3e-19 69.8 1.2 1.3e-19 69.8 1.2 2.1 2 0 0 2 2 2 1 AAA lid domain AAA_3 PF07726.11 gi|20089152|ref|NP_615227.1| - 4.8e-07 29.7 0.0 7.8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|20089152|ref|NP_615227.1| - 1.2e-06 28.9 0.0 3.7e-06 27.4 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|20089152|ref|NP_615227.1| - 0.0016 18.9 0.0 0.0045 17.4 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|20089152|ref|NP_615227.1| - 0.0033 16.8 0.3 1.9 7.8 0.0 2.7 2 0 0 2 2 2 2 KaiC AAA_7 PF12775.7 gi|20089152|ref|NP_615227.1| - 0.0083 15.7 0.0 0.054 13.0 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|20089152|ref|NP_615227.1| - 0.0089 15.4 0.1 0.03 13.7 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DASH_Spc34 PF08657.10 gi|20089152|ref|NP_615227.1| - 0.011 15.6 2.9 0.027 14.2 2.9 1.7 1 0 0 1 1 1 0 DASH complex subunit Spc34 Sigma54_activat PF00158.26 gi|20089152|ref|NP_615227.1| - 0.018 14.7 0.0 0.12 12.1 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|20089152|ref|NP_615227.1| - 0.032 14.0 0.0 0.079 12.7 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain zf-UBR PF02207.20 gi|20089152|ref|NP_615227.1| - 0.069 13.3 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) MCM PF00493.23 gi|20089152|ref|NP_615227.1| - 0.081 12.0 0.0 0.39 9.8 0.0 2.1 2 1 1 3 3 3 0 MCM P-loop domain AAA_11 PF13086.6 gi|20089152|ref|NP_615227.1| - 0.16 11.7 0.6 3.5 7.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain UPF0270 PF06794.12 gi|20089152|ref|NP_615227.1| - 1.5 8.9 4.4 16 5.7 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0270) YusW PF14039.6 gi|20089152|ref|NP_615227.1| - 2.4 8.7 7.7 3.6 8.2 3.6 2.9 2 0 0 2 2 2 0 YusW-like protein ThiF PF00899.21 gi|20089153|ref|NP_615228.1| - 3.6e-71 239.4 0.0 4.5e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|20089153|ref|NP_615228.1| - 0.018 15.1 0.2 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|20089153|ref|NP_615228.1| - 0.097 12.0 0.3 5.3 6.4 0.1 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|20089153|ref|NP_615228.1| - 0.14 11.7 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|20089153|ref|NP_615228.1| - 0.16 12.2 0.1 0.65 10.3 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Y1_Tnp PF01797.16 gi|20089155|ref|NP_615230.1| - 1.8e-33 115.2 3.8 2e-33 115.0 3.8 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.19 gi|20089156|ref|NP_615231.1| - 2e-28 99.0 1.2 4.4e-28 97.9 1.2 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|20089156|ref|NP_615231.1| - 2.7e-23 81.6 0.3 5.8e-23 80.6 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|20089156|ref|NP_615231.1| - 3.1e-21 74.6 0.4 5.8e-21 73.7 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|20089156|ref|NP_615231.1| - 0.002 18.2 2.8 0.0032 17.6 1.3 2.0 2 0 0 2 2 2 1 Piccolo Zn-finger HypA PF01155.19 gi|20089156|ref|NP_615231.1| - 0.066 13.2 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|20089156|ref|NP_615231.1| - 0.08 13.0 0.7 0.14 12.2 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|20089156|ref|NP_615231.1| - 0.26 11.4 0.9 0.52 10.5 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.18 gi|20089156|ref|NP_615231.1| - 7.3 6.0 8.3 18 4.8 0.4 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Beta_helix PF13229.6 gi|20089157|ref|NP_615232.1| - 7.8e-13 48.6 16.6 7.8e-13 48.6 16.6 1.8 2 0 0 2 2 2 1 Right handed beta helix region Glyco_hydro_28 PF00295.17 gi|20089157|ref|NP_615232.1| - 0.022 13.8 8.5 0.011 14.8 5.5 2.0 2 1 0 2 2 2 0 Glycosyl hydrolases family 28 Kelch_1 PF01344.25 gi|20089158|ref|NP_615233.1| - 0.0021 17.6 0.9 19 5.0 0.0 4.3 4 0 0 4 4 4 1 Kelch motif Kelch_4 PF13418.6 gi|20089158|ref|NP_615233.1| - 0.01 15.8 2.2 19 5.4 0.0 5.0 6 1 1 7 7 7 0 Galactose oxidase, central domain Kelch_3 PF13415.6 gi|20089158|ref|NP_615233.1| - 0.07 13.4 3.7 28 5.2 0.1 4.8 5 1 1 6 6 6 0 Galactose oxidase, central domain Kelch_6 PF13964.6 gi|20089158|ref|NP_615233.1| - 0.17 12.2 0.8 61 4.1 0.0 4.1 4 0 0 4 4 4 0 Kelch motif NUMOD1 PF07453.13 gi|20089158|ref|NP_615233.1| - 0.77 10.1 3.7 13 6.2 0.4 3.4 3 0 0 3 3 3 0 NUMOD1 domain DUF1522 PF07482.11 gi|20089158|ref|NP_615233.1| - 1.3 9.4 7.1 0.31 11.4 1.0 2.7 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1522) PQQ PF01011.21 gi|20089158|ref|NP_615233.1| - 2.6 8.1 7.4 29 4.8 0.1 4.9 5 0 0 5 5 5 0 PQQ enzyme repeat ThiC_Rad_SAM PF01964.18 gi|161484942|ref|NP_615234.2| - 6.4e-146 486.4 0.8 7.2e-146 486.2 0.8 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family TaqI_C PF12950.7 gi|20089160|ref|NP_615235.1| - 0.00042 20.4 0.5 0.00042 20.4 0.5 1.8 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Aldolase_II PF00596.21 gi|20089161|ref|NP_615236.1| - 4.6e-33 114.7 0.1 5.2e-33 114.5 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CDP-OH_P_transf PF01066.21 gi|20089162|ref|NP_615237.1| - 3.4e-13 50.2 0.4 3.4e-13 50.2 0.4 2.7 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase Archease PF01951.16 gi|20089163|ref|NP_615238.1| - 1.6e-48 164.5 0.5 1.8e-48 164.3 0.5 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) TetR_C_5 PF08360.11 gi|20089163|ref|NP_615238.1| - 0.059 13.6 0.0 0.096 12.9 0.0 1.4 1 0 0 1 1 1 0 QacR-like protein, C-terminal region RtcB PF01139.17 gi|20089164|ref|NP_615239.1| - 1.1e-171 571.6 0.4 1.3e-171 571.4 0.4 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|20089164|ref|NP_615239.1| - 0.18 11.8 0.1 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Complex 1 protein (LYR family) XhlA PF10779.9 gi|20089165|ref|NP_615240.1| - 0.067 13.4 0.3 0.61 10.3 0.1 2.3 2 0 0 2 2 2 0 Haemolysin XhlA MtrH PF02007.18 gi|20089167|ref|NP_615242.1| - 1.3e-155 517.0 0.8 1.5e-155 516.8 0.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit LPD23 PF18838.1 gi|20089167|ref|NP_615242.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Large polyvalent protein associated domain 23 DUF4346 PF14251.6 gi|20089167|ref|NP_615242.1| - 0.14 12.2 0.1 1.5 8.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4346) MtrG PF04210.13 gi|20089168|ref|NP_615243.1| - 3.2e-33 113.4 0.4 3.6e-33 113.2 0.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G ABC_tran_CTD PF16326.5 gi|20089168|ref|NP_615243.1| - 0.08 13.2 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 ABC transporter C-terminal domain TIM PF00121.18 gi|20089168|ref|NP_615243.1| - 0.094 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase MtrF PF09472.10 gi|20089169|ref|NP_615244.1| - 1.6e-30 104.3 1.3 1.8e-30 104.1 1.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|20089170|ref|NP_615245.1| - 6.2e-87 289.7 2.7 8.2e-87 289.3 2.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|20089170|ref|NP_615245.1| - 0.0092 15.4 1.5 0.013 14.9 0.3 1.9 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MerE PF05052.12 gi|20089170|ref|NP_615245.1| - 0.59 10.1 2.2 1.1 9.2 0.1 2.2 2 0 0 2 2 2 0 MerE protein MtrB PF05440.12 gi|20089171|ref|NP_615246.1| - 4.9e-38 129.4 0.0 5.7e-38 129.2 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.13 gi|20089172|ref|NP_615247.1| - 1.6e-108 361.8 31.3 1.9e-108 361.6 31.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C EI24 PF07264.11 gi|20089172|ref|NP_615247.1| - 0.0039 17.4 9.4 0.068 13.4 9.4 2.0 1 1 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) TssN PF17555.2 gi|20089172|ref|NP_615247.1| - 3.1 7.1 4.2 4 6.7 3.3 1.8 1 1 0 1 1 1 0 Type VI secretion system, TssN MtrD PF04207.12 gi|20089173|ref|NP_615248.1| - 7.1e-103 343.0 24.9 8.6e-103 342.7 24.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.12 gi|20089174|ref|NP_615249.1| - 2.9e-137 456.4 11.8 3.3e-137 456.2 11.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E Adeno_E3_CR2 PF02439.15 gi|20089174|ref|NP_615249.1| - 9.9 6.0 7.3 2.4 8.0 2.8 2.4 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 AP_endonuc_2 PF01261.24 gi|20089175|ref|NP_615250.1| - 9.9e-28 97.0 0.0 1.2e-27 96.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1815 PF08844.10 gi|20089175|ref|NP_615250.1| - 0.038 14.0 0.0 0.12 12.4 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1815) HMGL-like PF00682.19 gi|20089175|ref|NP_615250.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 HMGL-like TBP PF00352.21 gi|20089176|ref|NP_615251.1| - 1.3e-54 182.1 0.4 4.1e-26 90.8 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|20089176|ref|NP_615251.1| - 7.1e-08 32.5 0.0 0.0053 16.8 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) SSF PF00474.17 gi|20089177|ref|NP_615252.1| - 1.2e-35 123.2 33.2 1.7e-35 122.7 33.2 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family PSI_PsaJ PF01701.18 gi|20089177|ref|NP_615252.1| - 0.0065 17.0 1.2 0.0065 17.0 1.2 4.3 3 1 1 4 4 4 1 Photosystem I reaction centre subunit IX / PsaJ Nramp PF01566.18 gi|20089177|ref|NP_615252.1| - 0.043 12.8 30.9 0.0087 15.1 14.4 3.0 2 1 0 2 2 2 0 Natural resistance-associated macrophage protein SBP_bac_11 PF13531.6 gi|20089178|ref|NP_615253.1| - 3.3e-36 125.2 0.1 4.8e-36 124.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|20089178|ref|NP_615253.1| - 1.3e-10 41.8 0.3 2.4e-10 40.9 0.3 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|20089178|ref|NP_615253.1| - 0.014 14.9 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|20089179|ref|NP_615254.1| - 1.2e-17 64.2 10.7 1.2e-17 64.2 10.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4668 PF15701.5 gi|20089179|ref|NP_615254.1| - 1.7 8.5 4.8 0.2 11.5 0.6 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4668) ABC_tran PF00005.27 gi|20089180|ref|NP_615255.1| - 1.2e-33 116.5 0.0 2e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|20089180|ref|NP_615255.1| - 5.5e-18 65.0 0.6 2.1e-15 56.7 0.1 3.3 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|20089180|ref|NP_615255.1| - 7.7e-09 35.8 1.6 2.5e-05 24.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|20089180|ref|NP_615255.1| - 7.5e-08 32.4 0.0 2.1e-07 31.0 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|20089180|ref|NP_615255.1| - 0.00014 21.3 0.1 0.0017 17.9 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|20089180|ref|NP_615255.1| - 0.00046 20.7 0.4 0.0019 18.8 0.1 2.3 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE_3 PF12857.7 gi|20089180|ref|NP_615255.1| - 0.0023 17.8 0.0 0.0071 16.2 0.0 1.9 1 0 0 1 1 1 1 TOBE-like domain SbcCD_C PF13558.6 gi|20089180|ref|NP_615255.1| - 0.015 15.5 0.0 0.19 12.0 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|20089180|ref|NP_615255.1| - 0.02 15.4 0.0 0.031 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|20089180|ref|NP_615255.1| - 0.031 14.0 0.1 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein EF_TS PF00889.19 gi|20089180|ref|NP_615255.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Elongation factor TS AAA PF00004.29 gi|20089180|ref|NP_615255.1| - 0.15 12.5 0.7 2 8.8 0.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TOBE PF03459.17 gi|20089181|ref|NP_615256.1| - 1.5e-15 57.2 0.1 2.7e-15 56.4 0.1 1.5 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.27 gi|20089181|ref|NP_615256.1| - 3.2e-12 46.2 0.0 5.4e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|20089181|ref|NP_615256.1| - 0.064 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TOBE_3 PF12857.7 gi|20089181|ref|NP_615256.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 TOBE-like domain NPCBM_assoc PF10633.9 gi|20089182|ref|NP_615257.1| - 2.5e-07 30.9 0.6 0.0098 16.1 0.1 3.1 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|20089182|ref|NP_615257.1| - 0.015 15.6 3.9 0.32 11.3 0.1 3.2 1 1 2 3 3 3 0 CARDB NPCBM_assoc PF10633.9 gi|20089183|ref|NP_615258.1| - 0.00032 20.9 1.3 0.14 12.4 0.0 3.3 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_S13 PF02113.15 gi|20089183|ref|NP_615258.1| - 0.0091 14.8 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family DUF4442 PF14539.6 gi|20089183|ref|NP_615258.1| - 0.063 13.4 0.1 0.63 10.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4442) DUF4832 PF16116.5 gi|20089183|ref|NP_615258.1| - 0.093 12.6 2.3 0.39 10.6 1.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4832) O-ag_pol_Wzy PF14296.6 gi|20089183|ref|NP_615258.1| - 0.31 9.6 0.9 1.8 7.1 0.0 2.2 3 0 0 3 3 3 0 O-antigen polysaccharide polymerase Wzy MMPL PF03176.15 gi|20089184|ref|NP_615259.1| - 3.6e-57 193.8 13.8 1.4e-29 103.1 0.3 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|20089184|ref|NP_615259.1| - 5.4e-14 52.3 3.9 1.2e-06 28.5 0.2 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|20089184|ref|NP_615259.1| - 4.8e-09 35.9 5.9 4.8e-09 35.9 5.9 2.6 3 0 0 3 3 3 1 Protein export membrane protein Patched PF02460.18 gi|20089184|ref|NP_615259.1| - 8.8e-09 34.0 15.8 0.0004 18.6 4.3 3.1 3 0 0 3 3 3 3 Patched family ACR_tran PF00873.19 gi|20089184|ref|NP_615259.1| - 1.2e-07 29.9 20.6 0.00016 19.5 8.0 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family TrmB PF01978.19 gi|20089185|ref|NP_615260.1| - 7.4e-23 80.2 0.6 1.1e-22 79.6 0.6 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|20089185|ref|NP_615260.1| - 0.00024 20.4 0.0 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.6 gi|20089185|ref|NP_615260.1| - 0.0018 18.7 0.2 0.012 16.1 0.1 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.21 gi|20089185|ref|NP_615260.1| - 0.005 16.5 0.0 0.014 15.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|20089185|ref|NP_615260.1| - 0.0071 16.1 0.2 0.016 15.0 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|20089185|ref|NP_615260.1| - 0.008 16.3 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|20089185|ref|NP_615260.1| - 0.032 14.6 0.0 0.07 13.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_46 PF15977.5 gi|20089185|ref|NP_615260.1| - 0.043 13.8 0.0 0.13 12.3 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding PadR PF03551.14 gi|20089185|ref|NP_615260.1| - 0.072 13.1 0.1 0.21 11.6 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family ULD PF16534.5 gi|20089185|ref|NP_615260.1| - 0.12 12.4 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-like oligomerisation domain of SATB LexA_DNA_bind PF01726.16 gi|20089185|ref|NP_615260.1| - 0.16 11.8 0.0 0.41 10.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain MULE PF10551.9 gi|20089186|ref|NP_615261.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20089186|ref|NP_615261.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20089186|ref|NP_615261.1| - 0.023 14.7 0.1 0.063 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20089186|ref|NP_615261.1| - 0.028 14.3 0.6 0.059 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20089186|ref|NP_615261.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20089186|ref|NP_615261.1| - 0.064 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20089186|ref|NP_615261.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20089186|ref|NP_615261.1| - 0.17 12.0 3.3 0.38 10.8 3.3 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20089186|ref|NP_615261.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20089186|ref|NP_615261.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20089186|ref|NP_615261.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger Lactamase_B_3 PF13483.6 gi|20089187|ref|NP_615262.1| - 1.9e-38 131.9 0.0 2.4e-38 131.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|20089187|ref|NP_615262.1| - 1.2e-16 60.8 0.1 2.7e-16 59.7 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20089187|ref|NP_615262.1| - 0.0006 19.9 0.2 0.19 11.7 0.0 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Rpr2 PF04032.16 gi|20089188|ref|NP_615263.1| - 5.9e-17 61.7 0.2 9.1e-17 61.1 0.2 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF4674 PF15719.5 gi|20089188|ref|NP_615263.1| - 0.001 19.1 2.0 0.08 13.0 0.2 2.7 2 1 1 3 3 3 2 Domain of unknown function (DUF4674) DZR PF12773.7 gi|20089188|ref|NP_615263.1| - 0.034 14.2 0.2 0.058 13.4 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon TraT PF05818.12 gi|20089188|ref|NP_615263.1| - 0.18 11.4 0.0 0.24 11.1 0.0 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Ribosomal_L31 PF01197.18 gi|20089189|ref|NP_615264.1| - 0.11 12.8 0.1 0.17 12.1 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L31 UCR_TM PF02921.14 gi|20089189|ref|NP_615264.1| - 0.15 12.6 0.7 0.25 11.9 0.4 1.5 2 0 0 2 2 2 0 Ubiquinol cytochrome reductase transmembrane region SRP19 PF01922.17 gi|20089190|ref|NP_615265.1| - 2.2e-23 83.0 0.1 2.7e-23 82.7 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein DUF3696 PF12476.8 gi|20089192|ref|NP_615267.1| - 0.01 16.2 1.0 0.02 15.3 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3696) Tad PF13400.6 gi|20089192|ref|NP_615267.1| - 1.9 8.8 4.5 2.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Pilin_N PF07790.11 gi|20089193|ref|NP_615268.1| - 5.1e-10 40.1 0.0 1e-08 36.0 0.0 2.2 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF3450 PF11932.8 gi|20089194|ref|NP_615269.1| - 0.003 16.9 0.3 0.003 16.9 0.3 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) S6PP_C PF08472.10 gi|20089194|ref|NP_615269.1| - 0.02 14.7 6.3 0.02 14.7 6.3 1.6 1 1 0 1 1 1 0 Sucrose-6-phosphate phosphohydrolase C-terminal CLN3 PF02487.17 gi|20089194|ref|NP_615269.1| - 0.12 11.4 0.2 0.13 11.3 0.2 1.1 1 0 0 1 1 1 0 CLN3 protein Methyltransf_31 PF13847.6 gi|20089195|ref|NP_615270.1| - 5.4e-22 78.2 0.0 9.2e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089195|ref|NP_615270.1| - 3.1e-21 75.8 0.0 6.7e-21 74.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089195|ref|NP_615270.1| - 4.8e-21 75.3 0.0 9.4e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089195|ref|NP_615270.1| - 5e-15 55.7 0.0 7.6e-15 55.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089195|ref|NP_615270.1| - 5.5e-14 52.1 0.0 1e-13 51.2 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20089195|ref|NP_615270.1| - 4.9e-13 49.7 0.0 1e-12 48.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20089195|ref|NP_615270.1| - 1.1e-05 25.1 0.0 2.9e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|20089195|ref|NP_615270.1| - 3.9e-05 23.3 0.0 7.4e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|20089195|ref|NP_615270.1| - 0.00089 19.0 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.11 gi|20089195|ref|NP_615270.1| - 0.0011 18.0 0.0 0.0025 16.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|20089195|ref|NP_615270.1| - 0.0023 17.9 0.0 0.0034 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20089195|ref|NP_615270.1| - 0.0043 16.5 0.0 0.0061 16.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|20089195|ref|NP_615270.1| - 0.0064 15.9 0.0 0.011 15.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|20089195|ref|NP_615270.1| - 0.0094 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RQC PF09382.10 gi|20089195|ref|NP_615270.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 RQC domain 3HCDH_N PF02737.18 gi|20089195|ref|NP_615270.1| - 0.017 15.0 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NodS PF05401.11 gi|20089195|ref|NP_615270.1| - 0.029 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.19 gi|20089195|ref|NP_615270.1| - 0.037 13.8 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|20089195|ref|NP_615270.1| - 0.042 13.5 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|20089195|ref|NP_615270.1| - 0.047 13.6 0.0 0.084 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 gi|20089195|ref|NP_615270.1| - 0.12 11.8 0.0 12 5.3 0.0 2.6 2 1 0 2 2 2 0 CheR methyltransferase, SAM binding domain ABC_tran PF00005.27 gi|20089196|ref|NP_615271.1| - 6.4e-30 104.5 0.0 8.6e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089196|ref|NP_615271.1| - 3.9e-05 23.6 4.3 0.032 14.0 0.1 2.5 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|20089196|ref|NP_615271.1| - 0.029 13.8 0.0 0.068 12.5 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|20089196|ref|NP_615271.1| - 0.029 13.8 0.4 0.21 11.0 0.4 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|20089196|ref|NP_615271.1| - 0.045 12.4 0.2 2.3 6.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|20089196|ref|NP_615271.1| - 0.053 13.3 0.4 0.099 12.4 0.4 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|20089196|ref|NP_615271.1| - 0.12 12.8 0.1 2.5 8.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|20089196|ref|NP_615271.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.6 gi|20089196|ref|NP_615271.1| - 0.61 10.4 3.0 5.7 7.2 3.0 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|20089197|ref|NP_615272.1| - 6.2e-22 78.6 0.0 8.9e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20089197|ref|NP_615272.1| - 8.5e-15 55.0 0.1 1.9e-14 53.9 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20089197|ref|NP_615272.1| - 6.5e-08 32.7 0.1 8.1e-05 22.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|20089197|ref|NP_615272.1| - 0.00011 22.0 0.0 0.28 10.9 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.6 gi|20089197|ref|NP_615272.1| - 0.0047 16.6 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|20089197|ref|NP_615272.1| - 0.016 15.5 0.0 0.085 13.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|20089197|ref|NP_615272.1| - 0.13 12.7 0.2 0.37 11.2 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.20 gi|20089197|ref|NP_615272.1| - 0.15 12.0 0.1 18 5.2 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase BPD_transp_1 PF00528.22 gi|20089198|ref|NP_615273.1| - 2.6e-30 105.5 7.1 2.6e-30 105.5 7.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20089198|ref|NP_615273.1| - 3.7e-05 23.6 0.3 3.7e-05 23.6 0.3 3.4 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|20089199|ref|NP_615274.1| - 2.3e-45 154.6 11.1 2.3e-45 154.6 11.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|20089200|ref|NP_615275.1| - 9.8e-90 301.2 1.0 1.2e-89 301.0 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.12 gi|20089201|ref|NP_615276.1| - 1.3e-26 93.1 0.0 3.2e-26 91.8 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089201|ref|NP_615276.1| - 9.5e-25 87.1 0.0 4.1e-24 85.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089201|ref|NP_615276.1| - 8.5e-24 84.1 0.0 1.1e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089201|ref|NP_615276.1| - 8e-16 58.6 0.0 1.3e-15 58.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089201|ref|NP_615276.1| - 1.5e-15 57.4 0.0 2.2e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089201|ref|NP_615276.1| - 1.9e-13 50.3 0.0 2.9e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20089201|ref|NP_615276.1| - 4.9e-07 29.5 0.0 8.9e-07 28.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|20089201|ref|NP_615276.1| - 5.3e-06 26.2 0.0 7.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|20089201|ref|NP_615276.1| - 3.4e-05 23.9 0.0 6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20089201|ref|NP_615276.1| - 8.1e-05 22.5 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|20089201|ref|NP_615276.1| - 0.00014 20.9 0.0 0.00032 19.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) CMAS PF02353.20 gi|20089201|ref|NP_615276.1| - 0.00027 20.3 0.1 0.0009 18.6 0.0 1.8 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|20089201|ref|NP_615276.1| - 0.0003 20.4 0.0 0.00046 19.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CheR PF01739.18 gi|20089201|ref|NP_615276.1| - 0.00061 19.3 0.0 0.32 10.5 0.0 2.3 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain TPMT PF05724.11 gi|20089201|ref|NP_615276.1| - 0.0011 18.7 0.0 0.0027 17.4 0.0 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 gi|20089201|ref|NP_615276.1| - 0.0019 17.6 0.0 0.0026 17.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|20089201|ref|NP_615276.1| - 0.0023 17.4 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.18 gi|20089201|ref|NP_615276.1| - 0.0042 16.4 0.0 0.0075 15.6 0.0 1.4 2 0 0 2 2 1 1 O-methyltransferase domain AdoMet_MTase PF07757.13 gi|20089201|ref|NP_615276.1| - 0.0089 16.3 0.0 0.026 14.9 0.0 1.8 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase DREV PF05219.12 gi|20089201|ref|NP_615276.1| - 0.011 14.9 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase NodS PF05401.11 gi|20089201|ref|NP_615276.1| - 0.014 15.0 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|20089201|ref|NP_615276.1| - 0.025 14.5 0.0 0.068 13.1 0.0 1.6 2 0 0 2 2 1 0 Methyltransferase domain Mur_ligase PF01225.25 gi|20089201|ref|NP_615276.1| - 0.06 13.7 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain RrnaAD PF00398.20 gi|20089201|ref|NP_615276.1| - 0.072 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|20089201|ref|NP_615276.1| - 0.073 12.7 0.0 0.18 11.4 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 FmdE PF02663.14 gi|20089202|ref|NP_615277.1| - 1.5e-26 93.0 0.0 2.1e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zinc_ribbon_12 PF11331.8 gi|20089202|ref|NP_615277.1| - 2.5 8.0 6.2 1.5 8.7 0.8 2.3 1 1 1 2 2 2 0 Probable zinc-ribbon domain Fer4 PF00037.27 gi|20089203|ref|NP_615278.1| - 1.2e-50 167.4 86.3 3.5e-07 29.8 7.4 8.1 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089203|ref|NP_615278.1| - 3.6e-37 126.7 92.3 2.5e-09 37.6 11.9 5.4 2 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089203|ref|NP_615278.1| - 1.4e-32 112.4 53.3 1.1e-09 39.0 4.7 7.4 7 1 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|20089203|ref|NP_615278.1| - 4.9e-31 106.6 59.2 1.6e-08 34.6 5.6 6.2 6 0 0 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089203|ref|NP_615278.1| - 2.3e-30 103.4 84.3 3.6e-06 26.8 2.7 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089203|ref|NP_615278.1| - 2.7e-29 101.1 56.0 3.6e-09 36.6 6.2 6.0 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089203|ref|NP_615278.1| - 3.2e-28 97.6 65.3 1.7e-08 34.4 10.6 6.6 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089203|ref|NP_615278.1| - 2.1e-19 68.3 81.1 5e-06 26.3 2.0 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089203|ref|NP_615278.1| - 3.5e-19 69.1 50.9 1.7e-06 28.5 9.1 5.9 5 1 0 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089203|ref|NP_615278.1| - 3.2e-17 61.6 71.7 0.00017 21.9 3.0 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089203|ref|NP_615278.1| - 3.8e-16 59.3 61.1 9.9e-08 32.3 3.7 6.2 3 3 2 5 5 5 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089203|ref|NP_615278.1| - 2.7e-13 49.8 103.4 0.0017 19.1 5.8 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20089203|ref|NP_615278.1| - 6.3e-08 32.8 60.7 0.096 12.9 0.2 7.6 4 1 3 8 8 8 5 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089203|ref|NP_615278.1| - 2.2e-06 28.4 67.2 0.021 15.6 0.6 8.1 4 2 5 9 9 9 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089203|ref|NP_615278.1| - 0.00059 20.3 76.5 0.46 11.1 3.3 7.9 7 1 0 7 7 7 5 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|20089203|ref|NP_615278.1| - 0.03 14.5 37.4 0.046 13.9 2.5 5.7 3 2 3 6 6 6 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|20089203|ref|NP_615278.1| - 0.079 13.7 0.3 0.079 13.7 0.3 9.0 6 2 1 7 7 5 0 4Fe-4S single cluster domain Amidohydro_3 PF07969.11 gi|20089204|ref|NP_615279.1| - 2.2e-98 330.8 0.1 2.6e-98 330.6 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|20089204|ref|NP_615279.1| - 1.3e-07 31.3 0.2 0.00096 18.6 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family GXGXG PF01493.19 gi|20089205|ref|NP_615280.1| - 3.9e-07 29.9 23.5 1.5e-06 28.0 23.4 2.4 1 1 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.21 gi|20089206|ref|NP_615281.1| - 4.3e-10 39.6 0.0 5.8e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|20089207|ref|NP_615282.1| - 1.2e-14 54.2 0.0 8.9e-14 51.3 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|20089207|ref|NP_615282.1| - 0.11 12.2 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain DUF3235 PF11574.8 gi|20089208|ref|NP_615283.1| - 0.04 14.8 0.0 14 6.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) Cdc6_C PF09079.11 gi|20089208|ref|NP_615283.1| - 0.06 13.3 0.2 5.6 7.0 0.0 2.2 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain DAO PF01266.24 gi|20089208|ref|NP_615283.1| - 0.08 12.5 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase AF0941-like PF14591.6 gi|20089208|ref|NP_615283.1| - 0.84 10.2 3.7 10 6.7 0.5 2.4 2 0 0 2 2 2 0 AF0941-like SIMPL PF04402.14 gi|20089209|ref|NP_615284.1| - 1.7e-48 165.8 12.2 2.1e-48 165.5 12.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4448 PF14610.6 gi|20089209|ref|NP_615284.1| - 0.069 12.9 0.3 0.2 11.4 0.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF4448) YbaB_DNA_bd PF02575.16 gi|20089209|ref|NP_615284.1| - 3.1 8.1 8.3 0.48 10.7 1.5 2.9 3 1 0 3 3 3 0 YbaB/EbfC DNA-binding family Acetyltransf_6 PF13480.7 gi|20089211|ref|NP_615286.1| - 8.9e-09 35.6 0.0 2.6e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|20089211|ref|NP_615286.1| - 0.00096 18.1 0.0 0.11 11.3 0.0 2.7 2 1 0 3 3 3 1 FemAB family Acetyltransf_9 PF13527.7 gi|20089211|ref|NP_615286.1| - 0.0065 16.6 0.0 0.034 14.2 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB_like PF04339.12 gi|20089211|ref|NP_615286.1| - 0.026 13.6 0.0 0.2 10.7 0.0 2.1 1 1 0 1 1 1 0 Peptidogalycan biosysnthesis/recognition Benyvirus_P25 PF05744.11 gi|20089211|ref|NP_615286.1| - 0.18 11.1 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Benyvirus P25/P26 protein Methyltransf_25 PF13649.6 gi|20089212|ref|NP_615287.1| - 1.1e-15 58.1 0.0 1.9e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089212|ref|NP_615287.1| - 6.6e-15 55.7 0.0 1.1e-14 54.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20089212|ref|NP_615287.1| - 1.6e-13 50.6 0.1 5.2e-13 48.9 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|20089212|ref|NP_615287.1| - 2.4e-13 50.5 0.0 4.7e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089212|ref|NP_615287.1| - 2e-11 43.9 0.0 2.5e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089212|ref|NP_615287.1| - 4.4e-11 42.9 0.0 6.7e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089212|ref|NP_615287.1| - 1.6e-06 27.7 0.0 3.1e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|20089212|ref|NP_615287.1| - 4.3e-06 26.6 0.0 6.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20089212|ref|NP_615287.1| - 2.8e-05 23.7 0.0 5.1e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20089212|ref|NP_615287.1| - 5.9e-05 22.6 0.0 9.6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|20089212|ref|NP_615287.1| - 0.0001 21.8 0.0 0.0002 20.9 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|20089212|ref|NP_615287.1| - 0.00045 20.2 0.1 0.0017 18.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|20089212|ref|NP_615287.1| - 0.0045 16.6 0.0 0.018 14.6 0.0 1.9 2 1 1 3 3 3 1 Nodulation protein S (NodS) TPMT PF05724.11 gi|20089212|ref|NP_615287.1| - 0.0059 16.3 0.0 0.0082 15.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|20089212|ref|NP_615287.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|20089212|ref|NP_615287.1| - 0.023 14.3 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TRM13 PF05206.14 gi|20089212|ref|NP_615287.1| - 0.057 12.9 0.0 0.099 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase TRM13 Methyltransf_2 PF00891.18 gi|20089212|ref|NP_615287.1| - 0.14 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain DnaI_N PF07319.11 gi|20089213|ref|NP_615288.1| - 0.076 13.7 0.2 0.72 10.6 0.0 2.4 3 0 0 3 3 3 0 Primosomal protein DnaI N-terminus Formyl_trans_N PF00551.19 gi|20089214|ref|NP_615289.1| - 5.7e-52 176.1 0.0 6.6e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Peptidase_C14 PF00656.22 gi|20089214|ref|NP_615289.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Caspase domain Hydrolase_3 PF08282.12 gi|20089215|ref|NP_615290.1| - 8.9e-23 81.3 0.1 9.7e-23 81.2 0.1 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|20089215|ref|NP_615290.1| - 2.7e-05 23.8 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|20089215|ref|NP_615290.1| - 0.012 15.8 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|20089216|ref|NP_615291.1| - 6.2e-22 78.6 0.1 7.2e-22 78.3 0.1 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|20089216|ref|NP_615291.1| - 1.4e-08 34.6 0.1 1.7e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|20089216|ref|NP_615291.1| - 0.031 14.6 0.0 0.041 14.2 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF1314 PF07013.11 gi|20089216|ref|NP_615291.1| - 0.15 12.0 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1314) Acetyltransf_10 PF13673.7 gi|20089218|ref|NP_615293.1| - 8.3e-13 48.4 0.4 9.5e-13 48.2 0.4 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20089218|ref|NP_615293.1| - 1.1e-10 41.8 0.4 1.4e-10 41.4 0.4 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20089218|ref|NP_615293.1| - 1.1e-09 38.6 0.6 1.5e-09 38.2 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20089218|ref|NP_615293.1| - 8.7e-05 22.6 0.0 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|20089218|ref|NP_615293.1| - 0.0001 22.2 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|20089218|ref|NP_615293.1| - 0.00083 19.5 0.5 0.0019 18.3 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20089218|ref|NP_615293.1| - 0.0048 17.0 0.0 0.008 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|20089218|ref|NP_615293.1| - 0.0055 16.5 0.0 0.069 13.0 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 gi|20089218|ref|NP_615293.1| - 0.035 13.8 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 MOZ/SAS family PanZ PF12568.8 gi|20089218|ref|NP_615293.1| - 0.05 13.3 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 gi|20089218|ref|NP_615293.1| - 0.077 13.7 0.1 0.086 13.5 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 gi|20089218|ref|NP_615293.1| - 0.085 12.2 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF364 PF04016.12 gi|20089219|ref|NP_615294.1| - 5.5e-42 142.8 0.0 9.4e-42 142.1 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|20089219|ref|NP_615294.1| - 3.7e-19 68.7 0.0 6.3e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation QRPTase_C PF01729.19 gi|20089220|ref|NP_615295.1| - 6.5e-26 91.1 0.0 1.1e-25 90.4 0.0 1.3 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|20089220|ref|NP_615295.1| - 7.9e-12 45.1 0.0 1.5e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain ABC_tran PF00005.27 gi|20089221|ref|NP_615296.1| - 1.2e-30 106.8 0.0 2.1e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|20089221|ref|NP_615296.1| - 2.2e-16 59.9 0.0 3.1e-13 49.8 0.0 3.4 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|20089221|ref|NP_615296.1| - 3.4e-08 33.7 0.9 0.0074 16.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089221|ref|NP_615296.1| - 8.5e-07 28.6 0.1 6.4e-06 25.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|20089221|ref|NP_615296.1| - 4e-05 23.8 0.1 0.00071 19.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|20089221|ref|NP_615296.1| - 0.00016 22.1 0.0 0.00028 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20089221|ref|NP_615296.1| - 0.0014 18.9 0.0 0.0028 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089221|ref|NP_615296.1| - 0.002 17.8 0.1 0.011 15.4 0.1 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain TOBE_2 PF08402.10 gi|20089221|ref|NP_615296.1| - 0.012 15.7 0.0 0.041 14.0 0.0 2.0 1 1 0 1 1 1 0 TOBE domain Mg_chelatase PF01078.21 gi|20089221|ref|NP_615296.1| - 0.036 13.4 0.0 0.16 11.3 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|20089221|ref|NP_615296.1| - 0.045 13.7 0.2 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|20089221|ref|NP_615296.1| - 0.077 13.2 0.0 0.3 11.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|20089221|ref|NP_615296.1| - 0.12 12.1 0.4 2.8 7.6 0.0 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|20089221|ref|NP_615296.1| - 0.15 12.6 0.3 0.27 11.7 0.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20089221|ref|NP_615296.1| - 0.16 11.7 0.0 0.49 10.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|20089222|ref|NP_615297.1| - 2.6e-17 63.2 12.8 2.6e-17 63.2 12.8 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|20089223|ref|NP_615298.1| - 1.5e-42 145.9 0.0 1.7e-42 145.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|20089223|ref|NP_615298.1| - 0.0017 18.3 0.5 0.064 13.2 0.5 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|20089223|ref|NP_615298.1| - 0.0051 16.3 0.0 0.013 14.9 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 ox_reductase_C PF08635.10 gi|20089223|ref|NP_615298.1| - 0.098 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain Flavodoxin_2 PF02525.17 gi|20089224|ref|NP_615299.1| - 1.2e-57 194.8 0.0 1.3e-57 194.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|20089224|ref|NP_615299.1| - 2.1e-16 60.0 0.0 3.4e-15 56.1 0.0 2.2 1 1 0 1 1 1 1 NADPH-dependent FMN reductase FMN_red PF03358.15 gi|20089225|ref|NP_615300.1| - 3.3e-32 111.4 0.0 4.7e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089225|ref|NP_615300.1| - 8e-10 38.8 0.0 9.2e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|20089225|ref|NP_615300.1| - 0.00076 19.3 0.4 0.0011 18.7 0.4 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Flavodoxin_5 PF12724.7 gi|20089225|ref|NP_615300.1| - 0.085 13.1 0.0 3.5 7.9 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin domain Flavin_Reduct PF01613.18 gi|20089226|ref|NP_615301.1| - 6.8e-18 65.2 0.0 8.6e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain ABM PF03992.16 gi|20089227|ref|NP_615302.1| - 1.3e-19 70.0 0.0 1.7e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF1878 PF08963.10 gi|20089227|ref|NP_615302.1| - 0.09 13.3 1.6 0.16 12.5 0.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1878) Nitroreductase PF00881.24 gi|20089228|ref|NP_615303.1| - 3e-32 112.0 0.3 4.9e-17 62.5 0.2 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|20089228|ref|NP_615303.1| - 2.5e-13 50.1 0.1 2.2e-05 24.2 0.1 3.1 1 1 2 3 3 3 3 Putative TM nitroreductase Fer4 PF00037.27 gi|20089229|ref|NP_615304.1| - 1.4e-08 34.2 10.3 2.5e-06 27.1 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20089229|ref|NP_615304.1| - 1.8e-06 28.0 9.6 0.00029 20.9 11.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089229|ref|NP_615304.1| - 2.3e-06 28.4 10.5 1.7e-05 25.6 10.5 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|20089229|ref|NP_615304.1| - 3.8e-06 26.7 9.9 0.00075 19.5 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089229|ref|NP_615304.1| - 3.4e-05 24.3 8.2 8e-05 23.1 8.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089229|ref|NP_615304.1| - 0.00015 21.7 11.6 0.0044 17.0 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089229|ref|NP_615304.1| - 0.00017 21.7 9.9 0.00099 19.2 10.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089229|ref|NP_615304.1| - 0.0034 17.8 6.7 0.028 14.9 1.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089229|ref|NP_615304.1| - 0.0038 17.7 9.2 0.94 10.1 10.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089229|ref|NP_615304.1| - 0.005 17.3 9.1 0.1 13.1 9.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089229|ref|NP_615304.1| - 0.022 15.6 13.9 0.53 11.4 6.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Dehalogenase PF13486.6 gi|20089229|ref|NP_615304.1| - 0.052 12.9 0.0 0.075 12.4 0.0 1.3 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_13 PF13370.6 gi|20089229|ref|NP_615304.1| - 0.061 13.9 4.7 0.49 11.0 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|20089229|ref|NP_615304.1| - 0.069 13.3 12.0 0.77 9.9 12.0 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089229|ref|NP_615304.1| - 0.24 12.2 4.3 1.3 9.9 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089229|ref|NP_615304.1| - 1.5 9.1 9.7 7.5 6.8 2.0 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain FMN_red PF03358.15 gi|20089230|ref|NP_615305.1| - 3.3e-26 91.9 0.0 4e-26 91.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089230|ref|NP_615305.1| - 1.1e-14 54.6 0.0 1.3e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|20089230|ref|NP_615305.1| - 0.027 14.7 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain HxlR PF01638.17 gi|20089231|ref|NP_615306.1| - 1.5e-33 114.5 0.0 1.8e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|20089231|ref|NP_615306.1| - 0.01 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.22 gi|20089231|ref|NP_615306.1| - 0.095 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF505 PF04458.12 gi|20089231|ref|NP_615306.1| - 0.14 10.5 0.0 0.16 10.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_24 PF13412.6 gi|20089231|ref|NP_615306.1| - 0.15 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MatE PF01554.18 gi|20089232|ref|NP_615307.1| - 1.6e-53 180.6 40.2 1.2e-28 99.8 14.2 2.6 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|20089232|ref|NP_615307.1| - 1.2e-10 41.6 43.1 3.4e-08 33.7 14.7 4.6 3 2 1 4 4 4 3 Polysaccharide biosynthesis C-terminal domain Helicase_C_2 PF13307.6 gi|20089233|ref|NP_615308.1| - 1.6e-29 103.3 0.0 4.7e-29 101.7 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|20089233|ref|NP_615308.1| - 8.7e-16 58.0 1.0 5.3e-15 55.5 1.0 2.1 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|20089233|ref|NP_615308.1| - 5.8e-07 29.7 0.6 5.3e-05 23.3 0.6 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|20089233|ref|NP_615308.1| - 0.0025 17.3 0.2 0.0084 15.6 0.0 1.9 2 0 0 2 2 2 1 PhoH-like protein DEAD PF00270.29 gi|20089233|ref|NP_615308.1| - 0.0035 17.1 0.1 0.099 12.4 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Zot PF05707.12 gi|20089233|ref|NP_615308.1| - 0.0036 17.0 0.2 2.8 7.5 0.0 2.5 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) HBB PF06777.11 gi|20089233|ref|NP_615308.1| - 0.016 14.9 0.0 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 Helical and beta-bridge domain HTH_56 PF18662.1 gi|20089233|ref|NP_615308.1| - 0.078 13.1 3.3 0.13 12.4 0.0 2.6 3 0 0 3 3 3 0 Cch helix turn helix domain DUF2075 PF09848.9 gi|20089233|ref|NP_615308.1| - 0.14 11.3 0.1 5.2 6.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) OmpH PF03938.14 gi|20089233|ref|NP_615308.1| - 0.15 12.4 1.3 0.34 11.2 1.3 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_34 PF13872.6 gi|20089233|ref|NP_615308.1| - 0.19 10.6 0.0 0.36 9.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF5446 PF17522.2 gi|20089233|ref|NP_615308.1| - 4.3 7.6 5.1 1.2 9.3 1.2 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5446) NosD PF05048.13 gi|20089234|ref|NP_615309.1| - 1.9e-61 207.4 30.0 1.9e-61 207.4 30.0 2.2 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PKD PF00801.20 gi|20089234|ref|NP_615309.1| - 5.5e-45 151.1 37.0 7.2e-15 54.6 4.1 4.6 4 0 0 4 4 4 4 PKD domain Beta_helix PF13229.6 gi|20089234|ref|NP_615309.1| - 4.7e-19 68.8 31.1 1.6e-18 67.1 31.1 1.9 1 0 0 1 1 1 1 Right handed beta helix region PKD_3 PF16820.5 gi|20089234|ref|NP_615309.1| - 2.4e-10 40.0 10.9 0.0037 17.0 0.2 4.5 4 0 0 4 4 4 4 PKD-like domain MG2 PF01835.19 gi|20089234|ref|NP_615309.1| - 0.0017 18.8 9.0 4 7.9 0.3 4.7 3 1 1 4 4 4 2 MG2 domain Y_Y_Y PF07495.13 gi|20089234|ref|NP_615309.1| - 0.012 15.5 11.3 3.1 7.8 0.3 5.3 5 0 0 5 5 5 0 Y_Y_Y domain zf-H2C2_5 PF13909.6 gi|20089234|ref|NP_615309.1| - 0.2 11.4 1.7 0.49 10.2 1.7 1.7 1 0 0 1 1 1 0 C2H2-type zinc-finger domain CopC PF04234.12 gi|20089234|ref|NP_615309.1| - 0.31 12.1 12.6 3.7 8.7 0.4 4.2 2 1 2 4 4 4 0 CopC domain Phage_Gp19 PF09355.10 gi|20089234|ref|NP_615309.1| - 7.3 7.1 5.6 35 4.9 0.3 2.7 2 0 0 2 2 2 0 Phage protein Gp19/Gp15/Gp42 Spore_YtfJ PF09579.10 gi|20089235|ref|NP_615310.1| - 1e-20 73.6 2.6 1.6e-20 73.0 2.6 1.3 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.8 gi|20089236|ref|NP_615311.1| - 1e-14 54.3 0.3 2.3e-14 53.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2953) GHMP_kinases_N PF00288.26 gi|20089237|ref|NP_615312.1| - 9.4e-07 29.0 2.7 2e-06 28.0 2.7 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|20089237|ref|NP_615312.1| - 3.1e-06 27.5 0.0 5.8e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Nop PF01798.18 gi|20089238|ref|NP_615313.1| - 1.2e-52 178.7 0.0 6e-52 176.4 0.0 1.8 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|20089239|ref|NP_615314.1| - 8.6e-87 290.0 0.0 1e-86 289.7 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|20089239|ref|NP_615314.1| - 0.14 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase HTH_20 PF12840.7 gi|20089240|ref|NP_615315.1| - 2.4e-08 33.9 0.1 5.8e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20089240|ref|NP_615315.1| - 3.6e-08 33.1 0.3 6.3e-08 32.4 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|20089240|ref|NP_615315.1| - 3.8e-05 23.1 0.1 8.8e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|20089240|ref|NP_615315.1| - 0.00048 20.0 0.0 0.00077 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|20089240|ref|NP_615315.1| - 0.00055 19.8 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|20089240|ref|NP_615315.1| - 0.0013 18.5 0.1 0.0024 17.6 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HxlR PF01638.17 gi|20089240|ref|NP_615315.1| - 0.0098 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF4430 PF14478.6 gi|20089240|ref|NP_615315.1| - 0.032 14.8 0.8 0.11 13.2 0.4 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4430) HTH_IclR PF09339.10 gi|20089240|ref|NP_615315.1| - 0.052 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain ArsR PF09824.9 gi|20089240|ref|NP_615315.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.4 1 1 0 1 1 1 0 ArsR transcriptional regulator Terminase_5 PF06056.12 gi|20089240|ref|NP_615315.1| - 0.078 12.9 0.0 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_45 PF14947.6 gi|20089240|ref|NP_615315.1| - 0.1 12.6 0.0 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2162 PF09930.9 gi|20089241|ref|NP_615316.1| - 4e-72 242.3 21.1 4.5e-72 242.1 21.1 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Abhydrolase_9_N PF15420.6 gi|20089241|ref|NP_615316.1| - 0.42 10.6 4.4 0.38 10.7 0.3 2.3 2 1 1 3 3 3 0 Alpha/beta-hydrolase family N-terminus DUF3180 PF11377.8 gi|20089241|ref|NP_615316.1| - 0.73 10.0 8.5 0.87 9.7 0.1 3.0 2 1 1 4 4 4 0 Protein of unknown function (DUF3180) MotA_ExbB PF01618.16 gi|20089242|ref|NP_615317.1| - 6.6e-13 48.5 0.2 9.7e-13 48.0 0.2 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.19 gi|20089242|ref|NP_615317.1| - 0.033 14.1 0.5 0.049 13.5 0.3 1.4 1 1 0 1 1 1 0 VIT family DUF2149 PF09919.9 gi|20089243|ref|NP_615318.1| - 3.8e-34 116.8 0.2 4.6e-34 116.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) DUF5049 PF16468.5 gi|20089243|ref|NP_615318.1| - 0.16 11.9 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5049) CobN-Mg_chel PF02514.16 gi|20089244|ref|NP_615319.1| - 0 1089.4 6.1 0 1086.5 0.5 2.6 3 0 0 3 3 3 2 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.16 gi|20089246|ref|NP_615321.1| - 0 1097.4 0.0 0 1086.9 0.0 2.3 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF550 PF04447.12 gi|20089246|ref|NP_615321.1| - 0.013 15.6 0.0 4.3 7.5 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF550) Styelin PF17562.2 gi|20089246|ref|NP_615321.1| - 0.039 14.3 0.3 3.6 8.0 0.0 2.7 2 0 0 2 2 2 0 Styelin Arc_trans_TRASH PF08394.10 gi|20089246|ref|NP_615321.1| - 0.28 11.6 3.0 25 5.3 0.0 3.3 3 0 0 3 3 3 0 Archaeal TRASH domain Pico_P1A PF02226.16 gi|20089246|ref|NP_615321.1| - 0.6 10.2 3.8 7.9 6.6 0.3 3.1 2 0 0 2 2 2 0 Picornavirus coat protein (VP4) MULE PF10551.9 gi|20089248|ref|NP_615323.1| - 0.00024 21.4 0.0 0.0006 20.2 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 gi|20089248|ref|NP_615323.1| - 0.012 15.8 0.4 0.019 15.2 0.4 1.4 1 0 0 1 1 1 0 DDE domain YdjO PF14169.6 gi|20089248|ref|NP_615323.1| - 0.038 13.7 0.2 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20089248|ref|NP_615323.1| - 0.11 13.1 1.7 0.31 11.6 1.7 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.16 gi|20089248|ref|NP_615323.1| - 0.2 11.5 2.9 1.3 8.9 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_10 PF10058.9 gi|20089248|ref|NP_615323.1| - 0.48 10.2 3.6 0.35 10.6 1.3 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|20089248|ref|NP_615323.1| - 1.6 8.3 4.0 1.1 8.8 0.5 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding rve PF00665.26 gi|20089249|ref|NP_615324.1| - 2.5e-13 50.2 0.0 4.1e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20089249|ref|NP_615324.1| - 2.5e-05 23.9 0.2 6e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20089249|ref|NP_615324.1| - 9.2e-05 22.1 0.1 0.0049 16.6 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20089249|ref|NP_615324.1| - 0.033 13.6 0.0 0.064 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20089249|ref|NP_615324.1| - 0.038 14.1 0.1 0.1 12.8 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089249|ref|NP_615324.1| - 0.095 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20089249|ref|NP_615324.1| - 0.11 12.3 0.3 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal MMPL PF03176.15 gi|20089250|ref|NP_615325.1| - 2e-25 89.4 4.9 3.3e-25 88.7 4.9 1.2 1 0 0 1 1 1 1 MMPL family SecD_SecF PF02355.16 gi|20089250|ref|NP_615325.1| - 7.3e-10 38.5 6.5 7.3e-10 38.5 6.5 1.6 2 0 0 2 2 2 1 Protein export membrane protein Sterol-sensing PF12349.8 gi|20089250|ref|NP_615325.1| - 9.6e-08 32.0 1.8 2.2e-07 30.9 1.8 1.5 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|20089250|ref|NP_615325.1| - 6.2e-06 24.2 11.1 6.2e-06 24.2 11.1 2.0 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family CD34_antigen PF06365.12 gi|20089250|ref|NP_615325.1| - 0.011 15.3 0.1 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 CD34/Podocalyxin family Patched PF02460.18 gi|20089250|ref|NP_615325.1| - 0.082 11.0 14.0 0.031 12.4 10.0 1.9 2 0 0 2 2 2 0 Patched family DUF4293 PF14126.6 gi|20089250|ref|NP_615325.1| - 0.73 10.1 5.5 0.14 12.4 0.6 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4293) Wzy_C PF04932.15 gi|20089250|ref|NP_615325.1| - 6.7 6.3 8.4 39 3.9 5.9 2.7 2 1 0 2 2 2 0 O-Antigen ligase TetR_C_10 PF16295.5 gi|20089251|ref|NP_615326.1| - 2.1e-06 28.1 0.1 2.2e-06 28.0 0.1 1.1 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_5 PF08360.11 gi|20089251|ref|NP_615326.1| - 0.0084 16.3 0.1 0.0097 16.1 0.1 1.1 1 0 0 1 1 1 1 QacR-like protein, C-terminal region TetR_N PF00440.23 gi|20089252|ref|NP_615327.1| - 6.4e-18 64.3 0.0 9.2e-18 63.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20089252|ref|NP_615327.1| - 0.0061 16.7 0.0 0.013 15.6 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase DUF1724 PF08350.10 gi|20089254|ref|NP_615329.1| - 1.1e-18 67.1 0.0 1.4e-17 63.5 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) TSC22 PF01166.18 gi|20089254|ref|NP_615329.1| - 0.19 12.1 0.0 0.19 12.1 0.0 2.0 3 0 0 3 3 3 0 TSC-22/dip/bun family TrmB PF01978.19 gi|20089256|ref|NP_615331.1| - 6.1e-27 93.3 0.1 8.2e-27 92.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|20089256|ref|NP_615331.1| - 0.00011 21.9 0.0 0.00031 20.5 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain PadR PF03551.14 gi|20089256|ref|NP_615331.1| - 0.00021 21.2 0.0 0.1 12.5 0.0 2.2 1 1 1 2 2 2 2 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|20089256|ref|NP_615331.1| - 0.00032 21.0 0.0 0.00041 20.7 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor Rrf2 PF02082.20 gi|20089256|ref|NP_615331.1| - 0.00063 20.0 0.0 0.0017 18.6 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_24 PF13412.6 gi|20089256|ref|NP_615331.1| - 0.0021 17.6 0.1 0.0054 16.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20089256|ref|NP_615331.1| - 0.0024 17.8 0.0 0.01 15.8 0.0 2.1 2 1 1 3 3 3 1 MarR family GntR PF00392.21 gi|20089256|ref|NP_615331.1| - 0.0026 17.3 0.0 0.0058 16.3 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|20089256|ref|NP_615331.1| - 0.0038 17.1 0.0 0.0071 16.2 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20089256|ref|NP_615331.1| - 0.0099 16.4 0.0 0.037 14.5 0.0 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|20089256|ref|NP_615331.1| - 0.013 15.6 0.0 0.078 13.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|20089256|ref|NP_615331.1| - 0.021 14.6 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|20089256|ref|NP_615331.1| - 0.03 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_29 PF13551.6 gi|20089256|ref|NP_615331.1| - 0.033 14.2 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_46 PF15977.5 gi|20089256|ref|NP_615331.1| - 0.05 13.6 0.3 0.28 11.2 0.1 2.2 1 1 1 2 2 2 0 Winged helix-turn-helix DNA binding HTH_28 PF13518.6 gi|20089256|ref|NP_615331.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UBA_3 PF09288.10 gi|20089256|ref|NP_615331.1| - 0.15 11.9 0.1 2.7 7.8 0.0 2.2 1 1 0 2 2 2 0 Fungal ubiquitin-associated domain Lactamase_B_2 PF12706.7 gi|20089257|ref|NP_615332.1| - 9.1e-41 139.6 0.0 1.3e-40 139.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20089257|ref|NP_615332.1| - 1.8e-13 50.7 0.1 2.9e-13 50.0 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20089257|ref|NP_615332.1| - 0.062 13.3 6.4 0.26 11.3 6.4 2.2 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Flavodoxin_3 PF12641.7 gi|20089258|ref|NP_615333.1| - 1.1e-11 44.7 0.3 2.4e-08 33.9 0.2 2.1 2 0 0 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|20089258|ref|NP_615333.1| - 1.2e-11 45.1 0.0 1.7e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain UDPG_MGDP_dh_N PF03721.14 gi|20089258|ref|NP_615333.1| - 0.055 13.0 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1100 PF06500.11 gi|20089259|ref|NP_615334.1| - 3.5e-09 36.0 0.0 5e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_6 PF12697.7 gi|20089259|ref|NP_615334.1| - 3.4e-08 34.4 0.2 5.9e-08 33.6 0.1 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|20089259|ref|NP_615334.1| - 0.0003 19.6 0.0 0.00078 18.2 0.0 1.8 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|20089259|ref|NP_615334.1| - 0.001 18.6 0.0 0.083 12.4 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF3791 PF12668.7 gi|20089259|ref|NP_615334.1| - 0.024 14.6 0.0 0.055 13.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) Peptidase_S15 PF02129.18 gi|20089259|ref|NP_615334.1| - 0.03 13.9 0.0 1.4 8.5 0.0 2.3 1 1 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|20089259|ref|NP_615334.1| - 0.037 13.9 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Flavodoxin_5 PF12724.7 gi|20089260|ref|NP_615335.1| - 4.1e-11 43.3 0.1 6.2e-11 42.7 0.1 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|20089260|ref|NP_615335.1| - 3.2e-09 36.7 0.5 6e-06 26.0 0.3 2.1 2 0 0 2 2 2 2 Flavodoxin domain UDPG_MGDP_dh_N PF03721.14 gi|20089260|ref|NP_615335.1| - 0.062 12.9 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_106 PF17132.4 gi|20089260|ref|NP_615335.1| - 0.13 10.5 0.3 4.1 5.6 0.0 2.0 2 0 0 2 2 2 0 alpha-L-rhamnosidase TetR_N PF00440.23 gi|20089261|ref|NP_615336.1| - 2.9e-17 62.2 0.1 1.1e-16 60.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family AAA_12 PF13087.6 gi|20089261|ref|NP_615336.1| - 0.049 13.2 0.5 0.069 12.8 0.5 1.2 1 0 0 1 1 1 0 AAA domain HTH_7 PF02796.15 gi|20089261|ref|NP_615336.1| - 0.16 12.1 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Lactamase_B_2 PF12706.7 gi|20089262|ref|NP_615337.1| - 3.2e-39 134.5 0.1 4.2e-39 134.2 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20089262|ref|NP_615337.1| - 8.7e-13 48.5 0.1 1.4e-12 47.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20089262|ref|NP_615337.1| - 0.00044 20.3 2.6 0.00097 19.2 2.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ArsP_1 PF03773.13 gi|20089263|ref|NP_615338.1| - 4.8e-34 117.9 13.4 6.4e-34 117.4 13.4 1.1 1 0 0 1 1 1 1 Predicted permease DUF362 PF04015.12 gi|20089264|ref|NP_615339.1| - 3e-34 119.1 0.1 4.2e-34 118.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|20089264|ref|NP_615339.1| - 0.022 13.9 0.3 0.034 13.3 0.3 1.4 1 0 0 1 1 1 0 Lactate racemase N-terminal domain DUF4969 PF16339.5 gi|20089264|ref|NP_615339.1| - 0.13 12.6 0.0 0.41 11.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) TetR_N PF00440.23 gi|20089265|ref|NP_615340.1| - 6.5e-18 64.3 0.0 1.1e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_10 PF16295.5 gi|20089265|ref|NP_615340.1| - 5.4e-09 36.4 0.1 7e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|20089265|ref|NP_615340.1| - 0.019 15.1 0.0 0.22 11.7 0.0 2.6 1 1 1 2 2 2 0 Helix-turn-helix of insertion element transposase DUF111 PF01969.17 gi|20089266|ref|NP_615341.1| - 9.6e-20 71.0 0.0 1.2e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 RMMBL PF07521.12 gi|20089266|ref|NP_615341.1| - 0.0017 18.3 0.0 0.042 13.8 0.0 2.4 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain AA_kinase PF00696.28 gi|20089269|ref|NP_615344.1| - 2e-25 89.8 1.1 4.4e-25 88.7 1.1 1.5 1 1 0 1 1 1 1 Amino acid kinase family MacB_PCD PF12704.7 gi|20089271|ref|NP_615346.1| - 6.1e-22 78.9 0.4 6.1e-22 78.9 0.4 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20089271|ref|NP_615346.1| - 6.2e-15 55.4 6.4 6.2e-15 55.4 6.4 3.3 4 0 0 4 4 4 1 FtsX-like permease family DUF2613 PF11021.8 gi|20089271|ref|NP_615346.1| - 0.088 12.9 4.1 0.5 10.5 0.1 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DUF4849 PF16141.5 gi|20089271|ref|NP_615346.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 HRG PF16954.5 gi|20089271|ref|NP_615346.1| - 0.32 11.4 0.1 0.32 11.4 0.1 2.9 3 0 0 3 3 3 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene VAPB_antitox PF02697.14 gi|20089272|ref|NP_615347.1| - 0.0028 18.4 0.3 0.011 16.5 0.3 2.1 1 1 0 1 1 1 1 Putative antitoxin BofC_C PF08955.10 gi|20089272|ref|NP_615347.1| - 0.15 12.1 0.0 0.56 10.3 0.0 1.8 2 0 0 2 2 2 0 BofC C-terminal domain ParE_toxin PF05016.15 gi|20089273|ref|NP_615348.1| - 5.3e-12 46.2 1.0 6.1e-12 46.0 1.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|20089273|ref|NP_615348.1| - 2.9e-06 27.2 0.1 8.5e-06 25.6 0.1 1.7 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Gp49 PF05973.14 gi|20089273|ref|NP_615348.1| - 0.034 14.3 0.1 0.044 13.9 0.1 1.2 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) ABC_tran PF00005.27 gi|20089274|ref|NP_615349.1| - 3.8e-33 114.9 0.0 5.6e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20089274|ref|NP_615349.1| - 4e-09 36.2 0.0 2.1e-05 24.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20089274|ref|NP_615349.1| - 1.2e-07 31.8 0.5 0.0019 18.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20089274|ref|NP_615349.1| - 1.5e-05 25.4 0.3 3.7e-05 24.2 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20089274|ref|NP_615349.1| - 0.00017 21.2 0.1 0.00029 20.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|20089274|ref|NP_615349.1| - 0.00043 19.6 0.5 0.56 9.3 0.2 2.0 2 0 0 2 2 2 2 NB-ARC domain AAA_22 PF13401.6 gi|20089274|ref|NP_615349.1| - 0.0032 17.8 0.3 0.0061 16.8 0.3 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|20089274|ref|NP_615349.1| - 0.0068 16.3 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|20089274|ref|NP_615349.1| - 0.0072 16.5 0.4 0.029 14.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|20089274|ref|NP_615349.1| - 0.0074 16.0 0.3 0.037 13.8 0.1 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|20089274|ref|NP_615349.1| - 0.015 15.0 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|20089274|ref|NP_615349.1| - 0.033 13.8 0.1 0.16 11.5 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|20089274|ref|NP_615349.1| - 0.043 14.4 0.2 0.24 11.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|20089274|ref|NP_615349.1| - 0.048 13.4 0.0 5.8 6.5 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|20089274|ref|NP_615349.1| - 0.055 14.0 0.9 0.095 13.2 0.6 1.8 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|20089274|ref|NP_615349.1| - 0.064 12.6 0.2 2.7 7.3 0.1 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATPase PF06745.13 gi|20089274|ref|NP_615349.1| - 0.071 12.4 0.6 3.4 7.0 0.0 2.2 2 0 0 2 2 2 0 KaiC Mg_chelatase PF01078.21 gi|20089274|ref|NP_615349.1| - 0.074 12.4 0.1 0.16 11.3 0.1 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|20089274|ref|NP_615349.1| - 0.098 12.6 0.1 0.2 11.5 0.1 1.6 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_PrkA PF08298.11 gi|20089274|ref|NP_615349.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain ATP_bind_1 PF03029.17 gi|20089274|ref|NP_615349.1| - 0.12 12.1 0.2 2.8 7.7 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.6 gi|20089274|ref|NP_615349.1| - 0.14 12.4 0.1 2.5 8.4 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|20089274|ref|NP_615349.1| - 0.19 11.4 0.4 0.37 10.5 0.2 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|20089274|ref|NP_615349.1| - 0.21 11.5 0.6 0.43 10.5 0.1 1.8 2 1 0 2 2 2 0 NACHT domain Acetyltransf_1 PF00583.25 gi|20089275|ref|NP_615350.1| - 3.8e-15 56.1 0.0 4.6e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20089275|ref|NP_615350.1| - 3.6e-12 46.3 0.3 5.5e-12 45.7 0.3 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20089275|ref|NP_615350.1| - 5.9e-11 42.6 0.1 7.6e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20089275|ref|NP_615350.1| - 1.2e-05 25.2 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|20089275|ref|NP_615350.1| - 0.00012 22.2 0.0 0.00019 21.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|20089275|ref|NP_615350.1| - 0.0011 19.1 0.9 0.0016 18.6 0.9 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|20089275|ref|NP_615350.1| - 0.0022 17.5 0.6 0.0027 17.2 0.6 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|20089275|ref|NP_615350.1| - 0.0037 18.0 0.0 0.0043 17.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20089275|ref|NP_615350.1| - 0.0066 16.5 0.0 0.0095 16.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|20089275|ref|NP_615350.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|20089275|ref|NP_615350.1| - 0.02 14.8 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 gi|20089275|ref|NP_615350.1| - 0.063 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NDUFA12 PF05071.16 gi|20089275|ref|NP_615350.1| - 0.083 13.7 0.1 0.13 13.1 0.0 1.4 1 1 0 1 1 1 0 NADH ubiquinone oxidoreductase subunit NDUFA12 IF-2B PF01008.17 gi|20089276|ref|NP_615351.1| - 1.4e-83 280.4 1.2 1.6e-83 280.2 1.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1724 PF08350.10 gi|20089277|ref|NP_615352.1| - 6.3e-24 83.9 0.2 1.3e-23 82.9 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089277|ref|NP_615352.1| - 2e-05 24.3 0.0 3.7e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20089277|ref|NP_615352.1| - 0.00035 20.5 0.0 0.012 15.6 0.0 2.4 2 0 0 2 2 2 1 HTH domain HxlR PF01638.17 gi|20089277|ref|NP_615352.1| - 0.082 12.8 0.0 0.24 11.3 0.0 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix FmdE PF02663.14 gi|20089278|ref|NP_615353.1| - 1.6e-40 138.2 0.0 2.1e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|20089278|ref|NP_615353.1| - 2.8e-07 30.3 1.5 5.5e-07 29.4 1.5 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger TrmO PF01980.16 gi|20089279|ref|NP_615354.1| - 7.3e-29 100.4 0.0 9e-29 100.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O CobN-Mg_chel PF02514.16 gi|20089280|ref|NP_615355.1| - 9.4e-296 983.9 0.0 7.8e-295 980.9 0.0 1.9 2 0 0 2 2 2 2 CobN/Magnesium Chelatase GUN4_N PF16416.5 gi|20089280|ref|NP_615355.1| - 0.02 14.9 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 ARM-like repeat domain, GUN4-N terminal CobN-Mg_chel PF02514.16 gi|20089281|ref|NP_615356.1| - 0 1119.2 0.0 0 1118.7 0.0 1.2 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.6 gi|20089281|ref|NP_615356.1| - 0.00026 21.2 0.0 0.001 19.3 0.0 2.0 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|20089281|ref|NP_615356.1| - 0.0057 16.6 0.0 0.022 14.7 0.0 2.0 1 0 0 1 1 1 1 CarboxypepD_reg-like domain CobN-Mg_chel PF02514.16 gi|161484941|ref|NP_615357.2| - 0 1074.4 0.1 0 1073.6 0.1 1.3 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Orthopox_F14 PF06076.12 gi|161484941|ref|NP_615357.2| - 1.2 9.4 5.9 0.51 10.6 2.1 2.4 2 0 0 2 2 2 0 Orthopoxvirus F14 protein CobN-Mg_chel PF02514.16 gi|20089283|ref|NP_615358.1| - 0 1024.6 0.0 0 1024.2 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase SMI1_KNR4 PF09346.10 gi|20089283|ref|NP_615358.1| - 0.0033 17.8 1.4 0.02 15.3 0.1 3.0 3 1 0 3 3 3 1 SMI1 / KNR4 family (SUKH-1) Colicin_Pyocin PF01320.18 gi|20089283|ref|NP_615358.1| - 0.082 13.0 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 Colicin immunity protein / pyocin immunity protein SpoIIIAH PF12685.7 gi|20089283|ref|NP_615358.1| - 1.8 8.3 7.5 3.6 7.4 7.5 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein Zip PF02535.22 gi|20089284|ref|NP_615359.1| - 8.2e-25 87.7 28.4 5.3e-21 75.2 9.0 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.20 gi|20089284|ref|NP_615359.1| - 0.13 11.8 0.9 0.81 9.2 0.3 2.4 1 1 1 2 2 2 0 E1-E2 ATPase MULE PF10551.9 gi|20089285|ref|NP_615360.1| - 0.00041 20.7 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20089285|ref|NP_615360.1| - 0.069 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20089285|ref|NP_615360.1| - 0.16 12.5 1.7 0.51 10.9 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20089285|ref|NP_615360.1| - 0.19 11.5 1.3 0.58 9.9 1.3 1.8 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20089285|ref|NP_615360.1| - 0.41 10.6 3.0 2 8.4 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger CbiQ PF02361.16 gi|20089290|ref|NP_615365.1| - 9.8e-36 123.4 4.8 1.3e-35 123.0 4.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|20089291|ref|NP_615366.1| - 6.6e-32 110.9 0.0 1.3e-31 109.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089291|ref|NP_615366.1| - 2.6e-11 43.9 0.9 3.3e-05 23.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089291|ref|NP_615366.1| - 4.4e-07 29.6 0.0 1e-06 28.4 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20089291|ref|NP_615366.1| - 0.0006 19.5 0.2 0.0013 18.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|20089291|ref|NP_615366.1| - 0.0023 17.7 0.3 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|20089291|ref|NP_615366.1| - 0.0068 16.9 0.1 0.01 16.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.8 gi|20089291|ref|NP_615366.1| - 0.027 14.4 0.1 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter RsgA_GTPase PF03193.16 gi|20089291|ref|NP_615366.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|20089291|ref|NP_615366.1| - 0.08 12.7 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|20089291|ref|NP_615366.1| - 0.11 12.2 0.4 0.28 10.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20089291|ref|NP_615366.1| - 0.13 11.8 0.0 0.46 10.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_13 PF13166.6 gi|20089291|ref|NP_615366.1| - 0.15 10.7 0.1 4.9 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20089291|ref|NP_615366.1| - 0.16 11.5 0.1 0.59 9.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|20089291|ref|NP_615366.1| - 0.16 12.3 0.1 0.5 10.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain PhnA_Zn_Ribbon PF08274.12 gi|20089292|ref|NP_615367.1| - 1e-05 25.4 3.6 0.063 13.2 0.5 3.0 2 0 0 2 2 2 2 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.13 gi|20089292|ref|NP_615367.1| - 0.0006 19.4 5.7 0.17 11.6 0.1 3.7 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Desulfoferrod_N PF06397.12 gi|20089292|ref|NP_615367.1| - 0.0055 16.3 31.5 0.12 12.0 2.1 4.4 3 1 0 3 3 3 2 Desulfoferrodoxin, N-terminal domain zf-BED PF02892.15 gi|20089292|ref|NP_615367.1| - 0.15 12.1 0.2 0.15 12.1 0.2 2.7 2 0 0 2 2 2 0 BED zinc finger DrsE PF02635.15 gi|20089293|ref|NP_615368.1| - 9.2e-08 32.5 0.0 1.1e-07 32.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|20089293|ref|NP_615368.1| - 1.5e-07 31.5 0.0 1.5e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family rve PF00665.26 gi|20089294|ref|NP_615369.1| - 2.8e-13 50.1 0.0 4.6e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20089294|ref|NP_615369.1| - 2.7e-05 23.8 0.2 6.5e-05 22.6 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20089294|ref|NP_615369.1| - 0.00011 22.0 0.1 0.0052 16.5 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20089294|ref|NP_615369.1| - 0.036 13.5 0.0 0.068 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20089294|ref|NP_615369.1| - 0.042 14.0 0.1 0.11 12.7 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089294|ref|NP_615369.1| - 0.059 13.4 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20089294|ref|NP_615369.1| - 0.12 12.2 0.3 0.37 10.6 0.1 1.9 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20089294|ref|NP_615369.1| - 0.12 12.1 0.2 0.59 9.9 0.0 2.2 3 0 0 3 3 3 0 Replication initiation and membrane attachment MMPL PF03176.15 gi|20089295|ref|NP_615370.1| - 7.9e-32 110.5 4.4 9.8e-32 110.2 4.4 1.1 1 0 0 1 1 1 1 MMPL family Patched PF02460.18 gi|20089295|ref|NP_615370.1| - 8.1e-09 34.1 7.3 8.1e-09 34.1 7.3 1.4 1 1 1 2 2 2 1 Patched family Sterol-sensing PF12349.8 gi|20089295|ref|NP_615370.1| - 1.6e-07 31.3 0.6 1.6e-07 31.3 0.6 1.5 2 0 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation DUF2614 PF11023.8 gi|20089295|ref|NP_615370.1| - 10 6.3 6.7 1.2 9.2 1.5 2.0 2 0 0 2 2 2 0 Zinc-ribbon containing domain Cupin_2 PF07883.11 gi|20089297|ref|NP_615372.1| - 1.2e-10 41.0 0.8 1.2e-10 41.0 0.8 1.7 3 0 0 3 3 3 1 Cupin domain AraC_binding PF02311.19 gi|20089297|ref|NP_615372.1| - 6.5e-07 29.3 0.6 1e-06 28.7 0.6 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|20089297|ref|NP_615372.1| - 0.0047 16.5 0.0 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|20089297|ref|NP_615372.1| - 0.022 14.5 0.1 0.048 13.4 0.0 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|20089297|ref|NP_615372.1| - 0.06 13.3 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain ADH_N PF08240.12 gi|20089298|ref|NP_615373.1| - 9.1e-30 102.8 6.4 9.1e-30 102.8 6.4 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|20089298|ref|NP_615373.1| - 3.4e-14 52.9 0.0 6.5e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|20089298|ref|NP_615373.1| - 0.0017 17.7 0.0 0.0028 17.0 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|20089298|ref|NP_615373.1| - 0.008 16.4 0.0 0.026 14.7 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|20089298|ref|NP_615373.1| - 0.011 15.1 0.1 0.019 14.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldo_ket_red PF00248.21 gi|20089299|ref|NP_615374.1| - 5.2e-19 68.5 0.0 6.2e-15 55.2 0.0 2.2 1 1 1 2 2 2 2 Aldo/keto reductase family Fer4_17 PF13534.6 gi|20089299|ref|NP_615374.1| - 9.6e-09 35.7 7.7 2.5e-08 34.4 7.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089299|ref|NP_615374.1| - 5.6e-06 26.5 11.7 0.00023 21.3 1.5 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089299|ref|NP_615374.1| - 7.5e-06 26.0 6.5 1.7e-05 24.8 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089299|ref|NP_615374.1| - 1.6e-05 25.3 7.5 3.6e-05 24.1 7.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20089299|ref|NP_615374.1| - 1.9e-05 25.2 4.2 0.0022 18.5 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089299|ref|NP_615374.1| - 0.00028 21.0 11.0 0.00041 20.4 9.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20089299|ref|NP_615374.1| - 0.00062 19.5 2.7 0.00062 19.5 2.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20089299|ref|NP_615374.1| - 0.021 14.9 2.7 0.021 14.9 2.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089299|ref|NP_615374.1| - 0.065 13.8 2.2 0.065 13.8 2.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20089299|ref|NP_615374.1| - 0.13 12.4 10.0 0.5 10.5 10.0 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089299|ref|NP_615374.1| - 0.19 12.7 11.8 2.1 9.3 12.3 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|20089299|ref|NP_615374.1| - 2.8 7.8 9.8 0.2 11.4 1.4 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FMN_red PF03358.15 gi|20089300|ref|NP_615375.1| - 5.5e-24 84.7 0.0 6.6e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089300|ref|NP_615375.1| - 0.0039 16.9 0.0 0.0053 16.5 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_4 PF12682.7 gi|20089301|ref|NP_615376.1| - 6.8e-23 81.1 0.1 1.1e-22 80.4 0.1 1.4 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|20089301|ref|NP_615376.1| - 0.0026 17.5 0.0 0.68 9.6 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.15 gi|20089301|ref|NP_615376.1| - 0.013 15.3 0.0 0.021 14.6 0.0 1.3 1 1 0 1 1 1 0 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089301|ref|NP_615376.1| - 0.079 12.7 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold CMD PF02627.20 gi|20089302|ref|NP_615377.1| - 4.3e-27 94.0 0.0 8.8e-13 48.1 0.0 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family Hexapep PF00132.24 gi|20089303|ref|NP_615378.1| - 9.5e-13 47.3 3.3 8.9e-08 31.6 0.4 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20089303|ref|NP_615378.1| - 2.6e-09 36.7 0.9 2.2e-05 24.1 0.0 2.9 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Mac PF12464.8 gi|20089303|ref|NP_615378.1| - 0.084 13.1 0.0 0.18 12.1 0.0 1.5 2 0 0 2 2 2 0 Maltose acetyltransferase DUF3737 PF12541.8 gi|20089304|ref|NP_615379.1| - 9.3e-24 84.1 0.1 1.7e-23 83.2 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3737) DUF3785 PF12653.7 gi|20089304|ref|NP_615379.1| - 0.052 13.7 0.2 0.11 12.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3785) DUF3737 PF12541.8 gi|20089305|ref|NP_615380.1| - 3.8e-81 272.3 3.7 4.3e-81 272.1 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3737) Cyclophil_like2 PF18050.1 gi|20089306|ref|NP_615381.1| - 2.1e-52 176.0 1.0 2.4e-26 92.0 0.1 2.1 2 0 0 2 2 2 2 Cyclophilin-like family Cyclophil_like PF04126.13 gi|20089306|ref|NP_615381.1| - 2.3e-11 43.6 0.0 3e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 Cyclophilin-like Big_11 PF18200.1 gi|20089306|ref|NP_615381.1| - 0.038 13.9 0.2 0.1 12.5 0.2 1.7 1 0 0 1 1 1 0 Bacterial Ig-like domain DUF824 PF05688.11 gi|20089306|ref|NP_615381.1| - 0.17 11.7 0.1 6.2 6.7 0.0 2.6 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) DUF4162 PF13732.6 gi|20089306|ref|NP_615381.1| - 0.31 11.8 1.4 20 6.0 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) HxlR PF01638.17 gi|20089307|ref|NP_615382.1| - 9.2e-20 70.3 0.0 1.1e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|20089307|ref|NP_615382.1| - 0.0033 17.4 0.1 0.0053 16.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|20089307|ref|NP_615382.1| - 0.0048 16.4 0.1 0.011 15.3 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|20089307|ref|NP_615382.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PapB PF03333.13 gi|20089307|ref|NP_615382.1| - 0.047 13.7 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein LexA_DNA_bind PF01726.16 gi|20089307|ref|NP_615382.1| - 0.053 13.3 0.1 0.095 12.5 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain PadR PF03551.14 gi|20089307|ref|NP_615382.1| - 0.098 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family adh_short_C2 PF13561.6 gi|20089308|ref|NP_615383.1| - 2.5e-73 246.5 0.2 3.1e-73 246.2 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|20089308|ref|NP_615383.1| - 2.7e-59 199.9 1.3 3.4e-59 199.6 1.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|20089308|ref|NP_615383.1| - 2e-13 50.6 0.1 3e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|20089308|ref|NP_615383.1| - 2.8e-05 23.7 0.1 3.6e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Cupin_2 PF07883.11 gi|20089309|ref|NP_615384.1| - 3.8e-10 39.4 1.5 6.5e-10 38.6 1.2 1.6 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|20089309|ref|NP_615384.1| - 7.6e-06 25.9 0.6 9.9e-06 25.5 0.6 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|20089309|ref|NP_615384.1| - 0.031 13.9 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Cupin ADH_N PF08240.12 gi|20089310|ref|NP_615385.1| - 3.1e-29 101.0 0.2 6e-29 100.1 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|20089310|ref|NP_615385.1| - 1e-09 38.4 0.0 9.2e-08 32.1 0.0 2.8 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|20089310|ref|NP_615385.1| - 1.4e-08 34.5 2.4 1.4e-08 34.5 2.4 2.2 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated Glu_dehyd_C PF16912.5 gi|20089310|ref|NP_615385.1| - 1.1e-05 25.1 0.7 0.00023 20.7 0.0 2.9 3 0 0 3 3 3 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|20089310|ref|NP_615385.1| - 1.3e-05 24.6 0.1 2.4e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|20089310|ref|NP_615385.1| - 1.9e-05 23.5 0.0 2.6e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|20089310|ref|NP_615385.1| - 0.0028 16.9 0.0 0.0047 16.2 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|20089310|ref|NP_615385.1| - 0.057 13.0 0.0 0.098 12.2 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|20089310|ref|NP_615385.1| - 0.097 13.1 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding PALP PF00291.25 gi|20089310|ref|NP_615385.1| - 0.11 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme FMN_red PF03358.15 gi|20089311|ref|NP_615386.1| - 2.4e-23 82.6 0.0 3.1e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089311|ref|NP_615386.1| - 6.1e-13 48.9 0.0 8.2e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DLH PF01738.18 gi|20089312|ref|NP_615387.1| - 6.3e-06 25.9 0.2 6.4e-05 22.6 0.2 2.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|20089312|ref|NP_615387.1| - 2.6e-05 24.0 0.1 3.6e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|20089312|ref|NP_615387.1| - 0.00075 18.8 0.0 0.011 15.0 0.1 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|20089312|ref|NP_615387.1| - 0.0081 14.9 0.0 0.014 14.1 0.0 1.3 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|20089312|ref|NP_615387.1| - 0.022 14.2 0.1 0.083 12.4 0.1 1.9 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF2202 PF09968.9 gi|20089313|ref|NP_615388.1| - 1e-57 194.5 0.4 1.2e-57 194.2 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|20089313|ref|NP_615388.1| - 0.001 19.5 0.0 0.0014 19.1 0.0 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|20089313|ref|NP_615388.1| - 0.022 15.0 0.0 0.032 14.5 0.0 1.4 1 1 0 1 1 1 0 Ferritin-like domain Aldo_ket_red PF00248.21 gi|20089314|ref|NP_615389.1| - 3.7e-42 144.5 0.0 9.7e-41 139.9 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|20089314|ref|NP_615389.1| - 5.2e-12 46.1 6.5 1.3e-11 44.9 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089314|ref|NP_615389.1| - 1e-09 38.4 6.8 1.9e-09 37.5 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089314|ref|NP_615389.1| - 6.4e-06 26.3 1.8 0.0039 17.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089314|ref|NP_615389.1| - 5.1e-05 23.6 5.9 0.00012 22.4 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|20089314|ref|NP_615389.1| - 9.3e-05 22.2 2.4 0.00044 20.0 0.1 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|20089314|ref|NP_615389.1| - 9.6e-05 22.4 5.3 0.12 12.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089314|ref|NP_615389.1| - 0.00048 21.0 3.5 0.024 15.5 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|20089314|ref|NP_615389.1| - 0.0017 18.5 12.4 0.0078 16.3 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089314|ref|NP_615389.1| - 0.0018 19.1 3.6 0.41 11.5 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20089314|ref|NP_615389.1| - 0.0048 16.7 1.5 0.0048 16.7 1.5 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain PA_decarbox PF05870.11 gi|20089314|ref|NP_615389.1| - 0.089 12.4 0.2 1.3 8.6 0.0 2.3 2 1 0 2 2 2 0 Phenolic acid decarboxylase (PAD) Fer4_7 PF12838.7 gi|20089314|ref|NP_615389.1| - 0.64 10.7 14.0 8.1 7.1 14.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089314|ref|NP_615389.1| - 0.82 10.3 12.6 0.9 10.2 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20089314|ref|NP_615389.1| - 0.93 9.7 10.7 0.25 11.5 1.3 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Med27 PF11571.8 gi|20089314|ref|NP_615389.1| - 1.1 9.7 3.7 10 6.6 0.1 2.4 1 1 0 2 2 2 0 Mediator complex subunit 27 Ric8 PF10165.9 gi|20089316|ref|NP_615391.1| - 0.11 11.6 0.0 0.11 11.5 0.0 1.0 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn NHL PF01436.21 gi|20089317|ref|NP_615392.1| - 6.2e-14 51.2 0.2 1.7e-05 24.6 0.0 2.6 2 0 0 2 2 2 2 NHL repeat SBBP PF06739.11 gi|20089317|ref|NP_615392.1| - 7.7e-11 41.8 1.2 5.9e-05 23.0 0.3 2.5 2 0 0 2 2 2 2 Beta-propeller repeat SGL PF08450.12 gi|20089317|ref|NP_615392.1| - 7.5e-06 25.7 0.0 0.0023 17.6 0.0 2.1 1 1 1 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region DUF5128 PF17170.4 gi|20089317|ref|NP_615392.1| - 3.4e-05 23.1 0.7 0.016 14.4 0.1 2.0 1 1 1 2 2 2 2 6-bladed beta-propeller Phytase-like PF13449.6 gi|20089317|ref|NP_615392.1| - 0.00048 20.2 0.0 0.03 14.3 0.0 2.0 1 1 1 2 2 2 1 Esterase-like activity of phytase DUF4144 PF13642.6 gi|20089317|ref|NP_615392.1| - 0.017 15.7 0.0 0.31 11.6 0.0 2.1 1 1 1 2 2 2 0 protein structure with unknown function T_cell_tran_alt PF15128.6 gi|20089317|ref|NP_615392.1| - 0.095 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 T-cell leukemia translocation-altered DUF839 PF05787.13 gi|20089317|ref|NP_615392.1| - 0.11 11.7 0.1 1.7 7.7 0.0 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF839) Glucos_trans_II PF14264.6 gi|20089317|ref|NP_615392.1| - 2.8 7.2 9.7 4.5 6.5 1.9 2.3 1 1 0 2 2 2 0 Glucosyl transferase GtrII Aldo_ket_red PF00248.21 gi|20089319|ref|NP_615394.1| - 9.7e-41 139.9 0.0 4e-39 134.6 0.0 2.1 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|20089319|ref|NP_615394.1| - 1.5e-11 44.7 6.2 3.8e-11 43.4 6.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089319|ref|NP_615394.1| - 6.2e-10 39.1 6.8 1.2e-09 38.2 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089319|ref|NP_615394.1| - 1.2e-05 25.5 4.1 0.006 16.8 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089319|ref|NP_615394.1| - 2.5e-05 24.3 5.8 0.0031 17.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|20089319|ref|NP_615394.1| - 0.0003 20.5 5.2 0.00039 20.2 0.3 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|20089319|ref|NP_615394.1| - 0.00048 20.2 8.3 0.15 12.2 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089319|ref|NP_615394.1| - 0.00061 20.2 9.5 0.0017 18.7 9.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089319|ref|NP_615394.1| - 0.00097 20.0 4.7 0.023 15.6 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20089319|ref|NP_615394.1| - 0.0056 17.2 7.0 0.16 12.6 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20089319|ref|NP_615394.1| - 0.006 16.4 1.8 0.006 16.4 1.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20089319|ref|NP_615394.1| - 0.0088 16.9 6.5 2 9.3 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain PA_decarbox PF05870.11 gi|20089319|ref|NP_615394.1| - 0.11 12.1 0.1 0.51 10.0 0.0 2.0 2 0 0 2 2 2 0 Phenolic acid decarboxylase (PAD) Med27 PF11571.8 gi|20089319|ref|NP_615394.1| - 0.11 12.8 2.4 1.3 9.4 0.2 2.5 2 0 0 2 2 2 0 Mediator complex subunit 27 Fer4_3 PF12798.7 gi|20089319|ref|NP_615394.1| - 5.9 8.1 16.0 1.3 10.2 5.4 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089319|ref|NP_615394.1| - 6.7 7.5 14.4 1.5 9.5 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain AIRC PF00731.20 gi|20089320|ref|NP_615395.1| - 2.8e-17 62.7 2.1 4.8e-17 61.9 2.1 1.4 1 0 0 1 1 1 1 AIR carboxylase RRF PF01765.19 gi|20089320|ref|NP_615395.1| - 0.036 14.0 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Ribosome recycling factor DUF111 PF01969.17 gi|20089321|ref|NP_615396.1| - 1.8e-120 402.5 0.5 2.1e-120 402.3 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Semialdhyde_dhC PF02774.18 gi|20089322|ref|NP_615397.1| - 2.8e-36 125.3 0.0 4.7e-36 124.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|20089322|ref|NP_615397.1| - 2.3e-35 121.7 0.0 3.8e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|20089322|ref|NP_615397.1| - 0.0022 18.8 0.0 0.0037 18.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 gi|20089322|ref|NP_615397.1| - 0.0028 18.3 0.0 0.0057 17.4 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|20089322|ref|NP_615397.1| - 0.0036 17.2 0.0 0.0056 16.6 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|20089322|ref|NP_615397.1| - 0.015 15.6 0.0 0.025 14.8 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|20089322|ref|NP_615397.1| - 0.022 14.9 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Fer4 PF00037.27 gi|20089323|ref|NP_615398.1| - 5e-18 64.1 18.2 2.3e-09 36.7 5.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20089323|ref|NP_615398.1| - 1.8e-12 47.2 25.8 5.2e-09 36.1 14.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089323|ref|NP_615398.1| - 4.4e-12 46.0 11.9 5.1e-12 45.8 11.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20089323|ref|NP_615398.1| - 2.6e-11 43.9 11.7 4.7e-11 43.1 11.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089323|ref|NP_615398.1| - 9.3e-11 41.3 16.9 4.6e-06 26.5 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20089323|ref|NP_615398.1| - 9.4e-11 41.1 14.6 1.6e-05 24.7 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20089323|ref|NP_615398.1| - 5.1e-10 40.1 12.2 6.2e-05 23.9 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|20089323|ref|NP_615398.1| - 1.6e-09 37.7 13.6 3e-09 36.8 13.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089323|ref|NP_615398.1| - 2.5e-08 33.8 15.3 0.00043 20.6 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089323|ref|NP_615398.1| - 8.9e-08 32.6 12.6 2.5e-05 24.7 12.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089323|ref|NP_615398.1| - 4.4e-07 30.3 13.7 0.003 18.1 4.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 gi|20089323|ref|NP_615398.1| - 1.5e-06 28.3 5.9 1.5e-06 28.2 5.9 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089323|ref|NP_615398.1| - 1e-05 25.9 15.0 0.0031 17.9 15.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089323|ref|NP_615398.1| - 3e-05 24.8 7.7 0.04 14.8 0.7 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089323|ref|NP_615398.1| - 3.6e-05 24.4 18.9 0.013 16.4 6.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20089323|ref|NP_615398.1| - 9.2e-05 23.1 16.8 0.00075 20.2 3.0 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|20089323|ref|NP_615398.1| - 0.0015 18.7 9.8 0.0022 18.1 9.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|20089323|ref|NP_615398.1| - 0.17 12.0 6.7 0.74 10.0 1.6 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S HTH_45 PF14947.6 gi|20089324|ref|NP_615399.1| - 0.002 18.0 0.1 0.0032 17.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Scaffolding_pro PF11418.8 gi|20089324|ref|NP_615399.1| - 0.015 15.9 0.0 0.017 15.7 0.0 1.2 1 0 0 1 1 1 0 Phi29 scaffolding protein cobW PF02492.19 gi|20089325|ref|NP_615400.1| - 2.5e-38 131.4 0.2 3.4e-38 131.0 0.2 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|20089325|ref|NP_615400.1| - 0.00087 18.4 0.2 0.0037 16.3 0.2 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|20089325|ref|NP_615400.1| - 0.0034 17.0 0.4 0.0078 15.9 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|20089325|ref|NP_615400.1| - 0.0095 15.9 0.3 0.032 14.2 0.1 2.0 2 0 0 2 2 2 1 NTPase Viral_helicase1 PF01443.18 gi|20089325|ref|NP_615400.1| - 0.016 15.0 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|20089325|ref|NP_615400.1| - 0.018 14.3 0.4 0.051 12.8 0.2 1.8 2 0 0 2 2 2 0 Zeta toxin MobB PF03205.14 gi|20089325|ref|NP_615400.1| - 0.026 14.4 0.1 0.047 13.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|20089325|ref|NP_615400.1| - 0.042 13.6 0.1 0.075 12.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|20089325|ref|NP_615400.1| - 0.044 14.3 0.0 0.18 12.3 0.0 2.1 1 1 0 1 1 1 0 ABC transporter AAA_11 PF13086.6 gi|20089325|ref|NP_615400.1| - 0.097 12.4 0.7 3.7 7.2 0.1 2.4 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|20089325|ref|NP_615400.1| - 0.15 11.9 0.1 0.48 10.2 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein TrwB_AAD_bind PF10412.9 gi|20089325|ref|NP_615400.1| - 0.21 10.4 1.8 0.27 10.1 0.8 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|20089325|ref|NP_615400.1| - 0.23 11.5 1.6 0.58 10.2 1.6 2.2 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain HTH_45 PF14947.6 gi|20089326|ref|NP_615401.1| - 0.00094 19.1 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|20089326|ref|NP_615401.1| - 0.048 13.8 0.0 0.068 13.3 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain Pilin_N PF07790.11 gi|20089327|ref|NP_615402.1| - 0.021 15.8 0.2 0.081 13.9 0.1 2.0 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal MORN_2 PF07661.13 gi|20089327|ref|NP_615402.1| - 0.15 12.4 0.0 24 5.6 0.0 2.8 1 1 1 2 2 2 0 MORN repeat variant Radical_SAM PF04055.21 gi|20089328|ref|NP_615403.1| - 4.1e-10 40.3 0.5 8.8e-10 39.2 0.5 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF4096 PF13340.6 gi|20089329|ref|NP_615404.1| - 3.5e-28 97.6 0.2 9.6e-28 96.2 0.2 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20089329|ref|NP_615404.1| - 1.7e-15 57.3 5.2 5.5e-15 55.6 5.2 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20089329|ref|NP_615404.1| - 9.3e-13 48.4 1.6 1.9e-12 47.4 0.4 2.0 2 0 0 2 2 2 1 Transposase DDE domain DeoC PF01791.9 gi|20089331|ref|NP_615406.1| - 3.4e-61 206.9 0.1 4e-61 206.6 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|20089331|ref|NP_615406.1| - 7.2e-06 25.8 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family dUTPase PF00692.19 gi|20089332|ref|NP_615407.1| - 2.9e-11 43.2 0.0 3.9e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|20089332|ref|NP_615407.1| - 0.011 14.6 0.0 0.022 13.6 0.0 1.7 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF2341 PF10102.9 gi|20089333|ref|NP_615408.1| - 1.3e-24 86.6 0.0 4.9e-24 84.7 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Glyco_hydro_18 PF00704.28 gi|20089333|ref|NP_615408.1| - 1e-05 25.4 1.3 1.3e-05 25.1 0.1 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 Spore_III_AF PF09581.10 gi|20089334|ref|NP_615409.1| - 0.0071 16.4 2.7 0.035 14.2 1.5 2.3 2 0 0 2 2 2 1 Stage III sporulation protein AF (Spore_III_AF) Podoplanin PF05808.11 gi|20089334|ref|NP_615409.1| - 0.038 14.1 5.5 0.062 13.4 5.5 1.4 1 0 0 1 1 1 0 Podoplanin DUF4969 PF16339.5 gi|20089334|ref|NP_615409.1| - 2.2 8.7 0.0 2.2 8.7 0.0 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4969) Hid1 PF12722.7 gi|20089334|ref|NP_615409.1| - 7.1 4.6 6.9 8.7 4.3 6.9 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein PPP4R2 PF09184.11 gi|20089334|ref|NP_615409.1| - 7.9 6.0 12.5 10 5.6 12.5 1.1 1 0 0 1 1 1 0 PPP4R2 SDA1 PF05285.12 gi|20089334|ref|NP_615409.1| - 9.7 5.5 13.5 12 5.2 13.5 1.1 1 0 0 1 1 1 0 SDA1 FMN_red PF03358.15 gi|20089335|ref|NP_615410.1| - 1.8e-27 96.0 0.0 2.2e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089335|ref|NP_615410.1| - 5.9e-19 68.6 0.0 7.3e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|20089335|ref|NP_615410.1| - 0.025 14.8 0.0 0.097 12.9 0.0 1.9 1 1 1 2 2 2 0 Flavodoxin domain FMN_red PF03358.15 gi|20089336|ref|NP_615411.1| - 2.3e-24 85.9 0.0 2.5e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20089336|ref|NP_615411.1| - 1.5e-19 70.5 0.0 1.8e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|20089336|ref|NP_615411.1| - 0.0093 16.2 0.0 0.069 13.4 0.0 1.9 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|20089336|ref|NP_615411.1| - 0.18 12.0 0.1 18 5.5 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin Subtilosin_A PF11420.8 gi|20089336|ref|NP_615411.1| - 0.86 9.6 2.9 2.3 8.3 2.9 1.7 1 0 0 1 1 1 0 Bacteriocin subtilosin A Amelogenin PF02948.15 gi|20089337|ref|NP_615412.1| - 0.069 13.8 0.1 0.074 13.7 0.1 1.1 1 0 0 1 1 1 0 Amelogenin MacB_PCD PF12704.7 gi|20089338|ref|NP_615413.1| - 3e-25 89.7 2.8 5.7e-25 88.8 2.8 1.5 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20089338|ref|NP_615413.1| - 2.4e-11 43.9 5.1 2.4e-11 43.9 5.1 3.1 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|20089338|ref|NP_615413.1| - 6.3 5.5 11.4 8.2 5.2 6.5 2.7 2 1 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG DUF4491 PF14898.6 gi|20089339|ref|NP_615414.1| - 0.013 15.9 4.1 0.013 15.9 4.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4491) Sec20 PF03908.13 gi|20089339|ref|NP_615414.1| - 0.075 13.0 0.9 1.9 8.5 0.1 2.2 2 0 0 2 2 2 0 Sec20 DUF1700 PF08006.11 gi|20089339|ref|NP_615414.1| - 0.18 11.3 5.0 0.35 10.4 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) SelR PF01641.18 gi|20089340|ref|NP_615415.1| - 2.7e-56 188.9 0.4 3.2e-56 188.6 0.4 1.1 1 0 0 1 1 1 1 SelR domain TF_Zn_Ribbon PF08271.12 gi|20089340|ref|NP_615415.1| - 0.0025 17.3 1.8 1.2 8.7 0.0 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|20089340|ref|NP_615415.1| - 0.0031 17.2 1.2 0.1 12.3 0.1 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein ADD_ATRX PF17981.1 gi|20089340|ref|NP_615415.1| - 0.011 15.6 0.1 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 Cysteine Rich ADD domain DUF2318 PF10080.9 gi|20089340|ref|NP_615415.1| - 0.012 15.7 0.6 3 8.0 0.1 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-ribbon_3 PF13248.6 gi|20089340|ref|NP_615415.1| - 0.017 14.5 0.8 3.5 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|20089340|ref|NP_615415.1| - 0.02 14.5 0.5 5.5 6.7 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HNH_5 PF14279.6 gi|20089340|ref|NP_615415.1| - 0.029 14.2 0.1 0.87 9.5 0.0 2.3 2 0 0 2 2 2 0 HNH endonuclease Yippee-Mis18 PF03226.14 gi|20089340|ref|NP_615415.1| - 0.03 14.5 0.2 0.066 13.4 0.2 1.6 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_2 PF13240.6 gi|20089340|ref|NP_615415.1| - 0.069 12.9 1.3 7.8 6.4 0.0 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|20089340|ref|NP_615415.1| - 0.07 13.2 1.0 0.5 10.4 1.0 2.3 1 1 0 1 1 1 0 Double zinc ribbon DUF678 PF05077.12 gi|20089340|ref|NP_615415.1| - 0.11 12.7 0.1 21 5.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) GFA PF04828.14 gi|20089340|ref|NP_615415.1| - 0.11 12.8 1.4 5.3 7.5 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.7 gi|20089340|ref|NP_615415.1| - 0.17 11.8 1.6 16 5.6 0.2 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HAD_2 PF13419.6 gi|20089342|ref|NP_615417.1| - 8.2e-29 100.9 0.0 9.7e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20089342|ref|NP_615417.1| - 1e-13 52.1 0.0 8.4e-12 45.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20089342|ref|NP_615417.1| - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|20089342|ref|NP_615417.1| - 0.013 15.9 0.0 0.025 15.0 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|20089342|ref|NP_615417.1| - 0.12 12.5 0.3 4.4 7.5 0.2 3.1 2 2 1 3 3 3 0 Haloacid dehalogenase-like hydrolase TusA PF01206.17 gi|20089342|ref|NP_615417.1| - 0.14 12.0 0.1 0.37 10.6 0.1 1.7 1 0 0 1 1 1 0 Sulfurtransferase TusA Glyco_trans_1_3 PF13528.6 gi|20089343|ref|NP_615418.1| - 5.1e-20 72.0 0.0 1.8e-11 43.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|20089343|ref|NP_615418.1| - 3.2e-14 53.2 0.0 5.4e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.18 gi|20089343|ref|NP_615418.1| - 9.9e-08 31.2 0.0 9.5e-06 24.7 0.0 2.0 2 0 0 2 2 2 2 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_trans_1_4 PF13692.6 gi|20089343|ref|NP_615418.1| - 2.1e-05 24.9 0.0 5.2e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20089343|ref|NP_615418.1| - 2.4e-05 24.4 0.0 5.6e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 gi|20089343|ref|NP_615418.1| - 7.3e-05 22.8 0.0 0.00026 21.0 0.0 1.9 1 1 1 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.6 gi|20089343|ref|NP_615418.1| - 0.00024 21.1 0.0 0.00044 20.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|20089343|ref|NP_615418.1| - 0.00052 19.6 0.0 0.0013 18.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20089343|ref|NP_615418.1| - 0.18 12.2 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_tran_28_C PF04101.16 gi|20089344|ref|NP_615419.1| - 3.2e-15 56.5 0.0 5e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 gi|20089344|ref|NP_615419.1| - 5.8e-15 55.4 0.0 5.9e-09 35.6 0.0 2.0 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_transf_4 PF13439.6 gi|20089344|ref|NP_615419.1| - 5.4e-06 26.5 0.0 1.1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|20089344|ref|NP_615419.1| - 4.4e-05 23.9 0.0 9e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_28 PF03033.20 gi|20089344|ref|NP_615419.1| - 0.00022 21.3 0.0 0.00044 20.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain UDPGT PF00201.18 gi|20089344|ref|NP_615419.1| - 0.0035 16.2 0.0 0.0088 14.9 0.0 1.5 2 0 0 2 2 2 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_trans_4_4 PF13579.6 gi|20089344|ref|NP_615419.1| - 0.0081 16.6 0.0 0.024 15.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|20089344|ref|NP_615419.1| - 0.045 13.3 0.0 0.3 10.6 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|20089344|ref|NP_615419.1| - 0.14 12.2 0.0 0.38 10.8 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like PHP PF02811.19 gi|20089345|ref|NP_615420.1| - 3e-06 27.6 0.0 5.4e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 PHP domain Transketolase_C PF02780.20 gi|20089345|ref|NP_615420.1| - 0.15 11.9 0.0 0.86 9.5 0.0 2.0 2 0 0 2 2 2 0 Transketolase, C-terminal domain MtaB PF12176.8 gi|20089346|ref|NP_615421.1| - 1.1e-232 772.8 4.3 1.2e-232 772.6 4.3 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.19 gi|20089347|ref|NP_615422.1| - 9.6e-19 67.6 0.4 1.5e-18 67.0 0.4 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20089347|ref|NP_615422.1| - 5.5e-14 52.4 1.0 2e-13 50.6 0.1 2.4 2 1 0 2 2 2 1 B12 binding domain Ocnus PF05005.15 gi|20089347|ref|NP_615422.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) DUF2475 PF10629.9 gi|20089348|ref|NP_615423.1| - 0.033 14.4 0.3 0.04 14.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2475) DUF1724 PF08350.10 gi|20089350|ref|NP_615425.1| - 5.4e-19 68.1 0.1 1.6e-18 66.6 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089350|ref|NP_615425.1| - 0.0026 17.6 1.4 0.0026 17.6 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|20089350|ref|NP_615425.1| - 0.0062 16.5 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|20089350|ref|NP_615425.1| - 0.0089 15.9 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|20089350|ref|NP_615425.1| - 0.015 15.4 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20089350|ref|NP_615425.1| - 0.039 13.8 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family CART PF06373.11 gi|20089350|ref|NP_615425.1| - 0.047 13.9 0.0 0.2 11.9 0.0 2.0 3 0 0 3 3 3 0 Cocaine and amphetamine regulated transcript protein (CART) DUF1670 PF07900.11 gi|20089350|ref|NP_615425.1| - 0.079 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) SepQ PF06622.11 gi|20089350|ref|NP_615425.1| - 0.14 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 SepQ protein DUF1724 PF08350.10 gi|20089351|ref|NP_615426.1| - 2.9e-22 78.6 0.4 6.1e-22 77.5 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089351|ref|NP_615426.1| - 0.00059 19.7 0.1 0.001 18.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20089351|ref|NP_615426.1| - 0.0089 15.9 0.2 0.016 15.1 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|20089351|ref|NP_615426.1| - 0.024 15.1 0.0 0.06 13.8 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|20089351|ref|NP_615426.1| - 0.031 14.1 0.1 0.071 13.0 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|20089351|ref|NP_615426.1| - 0.088 12.4 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|20089351|ref|NP_615426.1| - 0.094 12.7 0.1 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|20089351|ref|NP_615426.1| - 0.14 12.1 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 MarR family SWIM PF04434.17 gi|20089352|ref|NP_615427.1| - 0.023 14.4 0.5 0.039 13.6 0.5 1.4 1 0 0 1 1 1 0 SWIM zinc finger DUF4259 PF14078.6 gi|20089352|ref|NP_615427.1| - 0.1 13.3 0.6 0.63 10.8 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4259) UDG PF03167.19 gi|20089353|ref|NP_615428.1| - 1.5e-12 47.8 0.0 1.8e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Fer4 PF00037.27 gi|20089354|ref|NP_615429.1| - 1.2e-18 66.1 22.8 4.6e-10 38.9 7.5 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089354|ref|NP_615429.1| - 3.3e-11 43.6 30.9 8.6e-09 35.9 18.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089354|ref|NP_615429.1| - 1.9e-10 40.7 15.9 2.3e-10 40.4 15.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089354|ref|NP_615429.1| - 4.7e-10 39.1 23.6 8.3e-06 25.7 10.0 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20089354|ref|NP_615429.1| - 7.7e-10 38.7 30.4 4.6e-07 29.9 17.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089354|ref|NP_615429.1| - 1.7e-09 37.7 18.5 2.8e-09 37.0 18.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089354|ref|NP_615429.1| - 6e-09 35.5 20.5 0.00015 21.6 4.0 2.7 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20089354|ref|NP_615429.1| - 4.7e-08 33.8 16.2 0.00032 21.6 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|20089354|ref|NP_615429.1| - 9.1e-07 28.9 17.6 0.0008 19.7 4.5 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089354|ref|NP_615429.1| - 3.2e-06 27.5 15.1 0.005 17.3 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089354|ref|NP_615429.1| - 1.9e-05 25.1 22.4 0.0095 16.5 6.0 2.9 2 2 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 gi|20089354|ref|NP_615429.1| - 8.5e-05 22.6 9.3 9.2e-05 22.5 9.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089354|ref|NP_615429.1| - 0.00025 21.8 25.1 0.0041 18.0 7.1 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089354|ref|NP_615429.1| - 0.00041 20.8 17.7 0.056 14.0 4.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089354|ref|NP_615429.1| - 0.00079 20.2 11.7 0.094 13.6 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089354|ref|NP_615429.1| - 0.013 15.7 16.9 0.64 10.2 16.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20089354|ref|NP_615429.1| - 0.056 14.2 23.1 99 3.8 23.1 3.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain TPR_20 PF14561.6 gi|20089355|ref|NP_615430.1| - 0.0008 19.7 1.1 0.04 14.3 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat SWIM PF04434.17 gi|20089355|ref|NP_615430.1| - 0.029 14.1 1.5 0.055 13.1 1.5 1.4 1 0 0 1 1 1 0 SWIM zinc finger 4HB_MCP_1 PF12729.7 gi|20089355|ref|NP_615430.1| - 0.081 12.5 4.2 0.32 10.5 4.1 2.1 1 1 0 1 1 1 0 Four helix bundle sensory module for signal transduction PPR PF01535.20 gi|20089355|ref|NP_615430.1| - 0.12 12.6 0.3 88 3.7 0.0 4.4 4 0 0 4 4 4 0 PPR repeat HK_sensor PF16750.5 gi|20089355|ref|NP_615430.1| - 0.17 12.2 1.8 32 4.9 0.0 3.2 2 1 1 3 3 3 0 Sensor domain of 2-component histidine kinase DAO PF01266.24 gi|20089356|ref|NP_615431.1| - 1.3e-39 136.8 0.2 1.6e-39 136.5 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 gi|20089356|ref|NP_615431.1| - 2.4e-12 46.6 0.0 5.2e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_3 PF01494.19 gi|20089356|ref|NP_615431.1| - 5.2e-06 26.0 0.0 7.5e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|20089356|ref|NP_615431.1| - 2.1e-05 24.6 0.3 5.7e-05 23.3 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|20089356|ref|NP_615431.1| - 0.00012 21.4 0.0 0.00022 20.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|20089356|ref|NP_615431.1| - 0.00032 19.9 1.2 0.002 17.3 1.2 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|20089356|ref|NP_615431.1| - 0.00094 19.7 0.3 0.0021 18.6 0.3 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|20089356|ref|NP_615431.1| - 0.0051 15.7 0.9 0.0076 15.2 0.9 1.2 1 0 0 1 1 1 1 Tryptophan halogenase FAD_oxidored PF12831.7 gi|20089356|ref|NP_615431.1| - 0.0061 16.0 0.2 0.009 15.4 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|20089356|ref|NP_615431.1| - 0.0083 15.4 0.2 0.014 14.7 0.2 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|20089356|ref|NP_615431.1| - 0.013 14.7 0.7 0.2 10.9 0.4 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|20089356|ref|NP_615431.1| - 0.023 13.4 0.1 0.067 11.9 0.2 1.6 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.22 gi|20089356|ref|NP_615431.1| - 0.1 11.7 0.4 0.15 11.1 0.4 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A DUF1579 PF07617.11 gi|20089357|ref|NP_615432.1| - 0.00024 21.1 0.1 0.00032 20.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1579) Cas_Cas1 PF01867.16 gi|20089358|ref|NP_615433.1| - 0.00081 18.6 1.4 0.11 11.6 0.0 2.7 3 0 0 3 3 3 1 CRISPR associated protein Cas1 HAUS-augmin3 PF14932.6 gi|20089358|ref|NP_615433.1| - 0.002 17.8 3.5 0.002 17.8 3.5 1.8 2 0 0 2 2 2 1 HAUS augmin-like complex subunit 3 MEKHLA PF08670.11 gi|20089358|ref|NP_615433.1| - 0.024 14.5 0.6 0.024 14.5 0.6 1.5 2 0 0 2 2 2 0 MEKHLA domain DUF445 PF04286.12 gi|20089358|ref|NP_615433.1| - 0.061 13.1 3.2 0.097 12.5 3.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Ecm29 PF13001.7 gi|20089358|ref|NP_615433.1| - 0.089 11.5 3.0 0.21 10.2 1.0 2.1 2 0 0 2 2 2 0 Proteasome stabiliser Prominin PF05478.11 gi|20089358|ref|NP_615433.1| - 0.1 10.6 11.2 0.0084 14.1 3.4 2.4 2 1 1 3 3 3 0 Prominin ALMT PF11744.8 gi|20089358|ref|NP_615433.1| - 0.14 11.0 3.3 0.21 10.4 3.3 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter COMMD1_N PF17221.3 gi|20089358|ref|NP_615433.1| - 0.28 11.5 2.2 1.5 9.2 0.0 2.5 2 1 1 3 3 3 0 COMMD1 N-terminal domain SPACA9 PF15120.6 gi|20089358|ref|NP_615433.1| - 0.42 10.4 8.1 0.85 9.4 4.6 2.6 2 1 1 3 3 3 0 Sperm acrosome-associated protein 9 Wbp11 PF09429.10 gi|20089358|ref|NP_615433.1| - 0.48 10.9 9.7 0.24 11.8 1.5 3.1 2 1 1 3 3 3 0 WW domain binding protein 11 L27 PF02828.16 gi|20089358|ref|NP_615433.1| - 1.4 8.7 6.5 0.77 9.6 0.4 3.2 3 0 0 3 3 3 0 L27 domain DUF5082 PF16888.5 gi|20089358|ref|NP_615433.1| - 1.6 9.0 14.3 3.7 7.9 0.2 3.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) Syntaxin-6_N PF09177.11 gi|20089358|ref|NP_615433.1| - 2 9.0 15.5 3.8 8.1 2.4 3.1 2 1 1 3 3 3 0 Syntaxin 6, N-terminal HHA PF05321.11 gi|20089358|ref|NP_615433.1| - 2.4 8.6 5.7 27 5.2 0.5 3.2 2 1 1 3 3 3 0 Haemolysin expression modulating protein TBCC_N PF16752.5 gi|20089358|ref|NP_615433.1| - 4.7 7.7 11.7 7.5 7.0 0.1 3.4 2 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain YueH PF14166.6 gi|20089358|ref|NP_615433.1| - 6.4 6.7 10.6 0.17 11.8 0.9 2.9 2 1 1 3 3 3 0 YueH-like protein ABC_tran_CTD PF16326.5 gi|20089358|ref|NP_615433.1| - 8.1 6.8 17.6 1.5 9.1 2.4 3.6 2 1 1 3 3 3 0 ABC transporter C-terminal domain Frataxin_Cyay PF01491.16 gi|20089358|ref|NP_615433.1| - 8.7 6.5 11.1 6.8 6.8 0.1 3.4 3 0 0 3 3 3 0 Frataxin-like domain Gag_p6 PF08705.11 gi|20089360|ref|NP_615435.1| - 0.031 14.5 1.2 0.35 11.2 0.1 2.4 2 1 0 2 2 2 0 Gag protein p6 DDE_Tnp_1_6 PF13751.6 gi|20089361|ref|NP_615436.1| - 2.7e-28 98.7 4.2 7.3e-28 97.3 2.8 2.3 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20089361|ref|NP_615436.1| - 9.4e-20 71.2 1.7 2.8e-19 69.6 1.7 1.9 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20089361|ref|NP_615436.1| - 9.4e-16 57.6 0.0 2.6e-15 56.2 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|20089361|ref|NP_615436.1| - 0.015 15.7 0.3 1.6 9.2 0.0 3.0 3 0 0 3 3 3 0 Transposase DDE domain AhpC-TSA PF00578.21 gi|20089361|ref|NP_615436.1| - 0.061 13.2 0.4 0.12 12.3 0.4 1.5 1 0 0 1 1 1 0 AhpC/TSA family RE_XamI PF09572.10 gi|20089361|ref|NP_615436.1| - 0.075 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 XamI restriction endonuclease Spore_YhaL PF14147.6 gi|20089362|ref|NP_615437.1| - 0.0024 17.5 0.3 0.0032 17.1 0.3 1.2 1 0 0 1 1 1 1 Sporulation protein YhaL Wzz PF02706.15 gi|20089362|ref|NP_615437.1| - 0.027 14.8 0.0 0.029 14.7 0.0 1.1 1 0 0 1 1 1 0 Chain length determinant protein She9_MDM33 PF05546.11 gi|20089362|ref|NP_615437.1| - 0.049 13.4 0.0 0.055 13.3 0.0 1.1 1 0 0 1 1 1 0 She9 / Mdm33 family ABC2_membrane_5 PF13346.6 gi|20089365|ref|NP_615440.1| - 0.0077 15.8 0.9 0.011 15.3 0.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein PRC PF05239.16 gi|20089366|ref|NP_615441.1| - 7.3e-16 58.0 0.0 9.4e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain PDZ_2 PF13180.6 gi|20089366|ref|NP_615441.1| - 0.0027 18.0 0.0 0.008 16.5 0.0 1.6 2 0 0 2 2 2 1 PDZ domain adh_short_C2 PF13561.6 gi|20089368|ref|NP_615443.1| - 1.8e-63 214.3 0.6 2e-63 214.1 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|20089368|ref|NP_615443.1| - 3.3e-54 183.3 0.2 4.2e-54 183.0 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|20089368|ref|NP_615443.1| - 4.2e-10 39.8 0.0 7.9e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 KR domain Ub-RnfH PF03658.14 gi|20089368|ref|NP_615443.1| - 0.051 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RnfH family Ubiquitin MoeA_C PF03454.15 gi|20089368|ref|NP_615443.1| - 0.075 13.2 0.0 0.28 11.4 0.0 1.9 2 0 0 2 2 2 0 MoeA C-terminal region (domain IV) UPF0175 PF03683.13 gi|20089370|ref|NP_615445.1| - 0.0078 15.9 0.2 0.061 13.0 0.0 2.5 3 0 0 3 3 3 1 Uncharacterised protein family (UPF0175) DUF4364 PF14277.6 gi|20089370|ref|NP_615445.1| - 0.016 15.0 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) PQQ_2 PF13360.6 gi|20089373|ref|NP_615448.1| - 0.0058 16.2 1.0 3.3 7.2 0.2 2.7 2 1 0 2 2 2 2 PQQ-like domain Kelch_4 PF13418.6 gi|20089373|ref|NP_615448.1| - 0.0062 16.5 1.5 15 5.6 0.1 4.5 4 0 0 4 4 4 2 Galactose oxidase, central domain N6_Mtase PF02384.16 gi|20089374|ref|NP_615449.1| - 1.2e-21 77.3 0.1 1.3e-21 77.2 0.1 1.0 1 0 0 1 1 1 1 N-6 DNA Methylase LigB PF02900.18 gi|20089375|ref|NP_615450.1| - 8e-24 84.1 0.0 1e-23 83.8 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PGF-CTERM PF18204.1 gi|20089376|ref|NP_615451.1| - 4.7e-06 26.4 1.6 1.5e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 PGF-CTERM motif Trypan_PARP PF05887.11 gi|20089376|ref|NP_615451.1| - 0.00011 22.2 8.5 0.00017 21.6 8.5 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) PD40 PF07676.12 gi|20089376|ref|NP_615451.1| - 0.0004 20.2 14.9 2.9 8.0 0.0 7.7 6 3 0 6 6 6 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|20089376|ref|NP_615451.1| - 0.0033 16.2 15.2 1.8 7.2 0.0 5.2 1 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region PSI_PsaH PF03244.14 gi|20089376|ref|NP_615451.1| - 0.011 15.2 2.6 2.8 7.4 0.0 2.8 2 1 0 2 2 2 0 Photosystem I reaction centre subunit VI CarboxypepD_reg PF13620.6 gi|20089376|ref|NP_615451.1| - 0.11 12.8 0.1 1.2 9.5 0.0 2.5 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain Pilin PF00114.19 gi|20089376|ref|NP_615451.1| - 0.38 11.7 4.2 0.58 11.1 0.1 3.0 3 1 0 3 3 3 0 Pilin (bacterial filament) PKD PF00801.20 gi|20089377|ref|NP_615452.1| - 1.2e-09 37.9 2.9 2.2e-09 37.0 2.9 1.4 1 0 0 1 1 1 1 PKD domain PD40 PF07676.12 gi|20089377|ref|NP_615452.1| - 0.0012 18.7 24.8 1.8 8.6 0.1 9.8 10 0 0 10 10 10 3 WD40-like Beta Propeller Repeat ATR13 PF16829.5 gi|20089378|ref|NP_615453.1| - 0.072 13.4 0.1 0.084 13.2 0.1 1.2 1 0 0 1 1 1 0 Avirulence protein ATR13, RxLR effector PocR PF10114.9 gi|20089379|ref|NP_615454.1| - 2.1e-47 160.9 0.1 2.6e-46 157.3 0.0 2.5 2 0 0 2 2 2 1 Sensory domain found in PocR PAS_3 PF08447.12 gi|20089379|ref|NP_615454.1| - 5.1e-41 138.9 2.2 8e-22 77.3 0.1 3.6 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.12 gi|20089379|ref|NP_615454.1| - 4e-33 113.3 1.0 1.8e-32 111.3 1.0 2.2 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 gi|20089379|ref|NP_615454.1| - 3.4e-24 85.1 0.3 6.6e-16 58.4 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|20089379|ref|NP_615454.1| - 6.2e-20 71.5 0.0 2.5e-11 43.8 0.0 3.6 4 0 0 4 4 3 2 PAS fold PAS PF00989.25 gi|20089379|ref|NP_615454.1| - 1e-19 70.6 0.0 2.8e-11 43.4 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|20089379|ref|NP_615454.1| - 8e-10 39.2 0.0 2.6e-09 37.5 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20089379|ref|NP_615454.1| - 8.1e-05 22.5 0.0 0.0003 20.7 0.0 2.0 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.14 gi|20089379|ref|NP_615454.1| - 0.00024 21.8 0.4 0.00096 19.8 0.1 2.3 2 0 0 2 2 1 1 HWE histidine kinase PAS_11 PF14598.6 gi|20089379|ref|NP_615454.1| - 0.00068 19.7 0.0 1.1 9.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain DUF2564 PF10819.8 gi|20089379|ref|NP_615454.1| - 0.0066 16.8 1.4 0.03 14.7 1.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2564) HATPase_c_2 PF13581.6 gi|20089379|ref|NP_615454.1| - 0.0083 16.1 0.0 0.03 14.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|20089379|ref|NP_615454.1| - 0.12 12.1 1.8 0.29 10.9 0.1 2.6 3 1 1 4 4 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain YscO PF07321.12 gi|20089379|ref|NP_615454.1| - 0.26 11.2 7.9 0.039 13.9 2.0 2.2 2 0 0 2 2 2 0 Type III secretion protein YscO Syntaxin_2 PF14523.6 gi|20089379|ref|NP_615454.1| - 0.84 10.0 9.2 1 9.8 2.7 2.6 2 0 0 2 2 2 0 Syntaxin-like protein Baculo_PEP_C PF04513.12 gi|20089379|ref|NP_615454.1| - 0.96 9.5 3.4 9.5 6.3 0.1 2.9 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Pkip-1 PF06878.11 gi|20089379|ref|NP_615454.1| - 2.3 8.3 9.6 0.31 11.1 1.7 2.8 3 0 0 3 3 3 0 Pkip-1 protein DUF5344 PF17279.2 gi|20089379|ref|NP_615454.1| - 3.4 8.3 9.5 0.33 11.6 1.8 2.9 2 1 1 3 3 3 0 Family of unknown function (DUF5344) DUF4164 PF13747.6 gi|20089379|ref|NP_615454.1| - 4.1 7.7 8.7 0.65 10.3 3.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF5315 PF17242.2 gi|20089379|ref|NP_615454.1| - 8.3 6.3 7.3 0.49 10.3 0.1 2.7 4 0 0 4 4 3 0 Disordered region of unknown function (DUF5315) OmpH PF03938.14 gi|20089379|ref|NP_615454.1| - 8.8 6.7 10.2 4.5 7.6 2.5 2.5 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) YkyA PF10368.9 gi|20089379|ref|NP_615454.1| - 9.9 5.8 14.6 0.095 12.4 3.7 2.3 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein SDF PF00375.18 gi|20089380|ref|NP_615455.1| - 4.5e-70 236.6 33.8 2.7e-69 234.1 30.7 2.1 1 1 1 2 2 2 2 Sodium:dicarboxylate symporter family SBP_bac_3 PF00497.20 gi|20089380|ref|NP_615455.1| - 4.2e-28 98.3 0.0 5.4e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|20089380|ref|NP_615455.1| - 0.0079 16.4 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site YoqO PF14037.6 gi|20089381|ref|NP_615456.1| - 0.0023 18.4 5.1 0.0044 17.5 4.3 2.0 1 1 0 1 1 1 1 YoqO-like protein 7TMR-DISM_7TM PF07695.11 gi|20089381|ref|NP_615456.1| - 0.039 13.8 27.3 0.19 11.6 7.3 2.1 1 1 1 2 2 2 0 7TM diverse intracellular signalling Tmemb_55A PF09788.9 gi|20089381|ref|NP_615456.1| - 4.9 6.2 6.3 11 5.0 6.3 1.6 1 0 0 1 1 1 0 Transmembrane protein 55A Ala_racemase_N PF01168.20 gi|20089382|ref|NP_615457.1| - 1.8e-26 93.2 0.0 2.1e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain PPR_2 PF13041.6 gi|20089382|ref|NP_615457.1| - 0.085 13.1 0.1 23 5.3 0.0 2.3 2 0 0 2 2 2 0 PPR repeat family Uteroglobin PF01099.17 gi|20089382|ref|NP_615457.1| - 0.14 12.5 0.0 0.33 11.3 0.0 1.6 1 0 0 1 1 1 0 Uteroglobin family CarboxypepD_reg PF13620.6 gi|20089386|ref|NP_615461.1| - 2.5e-10 40.5 7.9 2.9e-08 33.9 0.2 4.1 4 1 0 4 4 4 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|20089386|ref|NP_615461.1| - 4.8e-07 29.7 2.6 1.6e-06 28.0 0.2 2.9 3 0 0 3 3 3 1 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|20089386|ref|NP_615461.1| - 0.00012 22.2 1.7 0.026 14.8 0.4 3.4 3 0 0 3 3 3 1 SdrD B-like domain Beta_helix PF13229.6 gi|20089386|ref|NP_615461.1| - 0.0019 18.1 28.5 0.0019 18.1 28.5 4.0 2 1 3 5 5 5 2 Right handed beta helix region Gpi16 PF04113.14 gi|20089386|ref|NP_615461.1| - 0.01 14.3 0.1 0.016 13.6 0.1 1.2 1 0 0 1 1 1 0 Gpi16 subunit, GPI transamidase component DUF5305 PF17231.2 gi|20089386|ref|NP_615461.1| - 0.024 14.0 0.1 0.062 12.7 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5305) bMG3 PF11974.8 gi|20089386|ref|NP_615461.1| - 0.028 14.4 0.0 0.61 10.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial alpha-2-macroglobulin MG3 domain GyrI-like PF06445.15 gi|20089388|ref|NP_615463.1| - 2.7e-34 118.7 1.0 3e-34 118.6 1.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|20089388|ref|NP_615463.1| - 4.4e-11 43.2 1.0 5.5e-11 42.8 1.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein Minor_capsid_3 PF12691.7 gi|20089388|ref|NP_615463.1| - 0.054 13.9 0.0 0.091 13.1 0.0 1.4 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage Mpt_N PF09176.11 gi|20089390|ref|NP_615465.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal DUF2104 PF09877.9 gi|20089391|ref|NP_615466.1| - 0.065 13.5 10.7 2.5 8.4 0.2 3.3 2 2 1 3 3 3 0 Predicted membrane protein (DUF2104) DUF1230 PF06799.11 gi|20089391|ref|NP_615466.1| - 0.47 10.5 2.8 0.3 11.2 0.7 1.6 2 0 0 2 2 2 0 Conserved in the green lineage and diatoms 27 CRCB PF02537.15 gi|20089391|ref|NP_615466.1| - 8.9 6.7 9.1 1.2 9.5 2.6 2.6 3 0 0 3 3 3 0 CrcB-like protein, Camphor Resistance (CrcB) Cloacin PF03515.14 gi|20089392|ref|NP_615467.1| - 0.22 11.1 0.0 0.27 10.9 0.0 1.0 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain HTH_20 PF12840.7 gi|20089393|ref|NP_615468.1| - 2.4e-11 43.5 0.0 3.7e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20089393|ref|NP_615468.1| - 1.5e-10 40.8 0.1 3.8e-10 39.5 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|20089393|ref|NP_615468.1| - 5.4e-07 29.4 0.1 9.2e-07 28.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|20089393|ref|NP_615468.1| - 2.2e-06 28.1 0.1 4.2e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|20089393|ref|NP_615468.1| - 4.1e-05 23.4 0.0 7.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20089393|ref|NP_615468.1| - 4.6e-05 22.9 0.3 0.0001 21.8 0.1 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|20089393|ref|NP_615468.1| - 5.5e-05 23.0 1.5 0.00015 21.6 0.1 2.4 2 1 1 3 3 3 1 HTH domain PadR PF03551.14 gi|20089393|ref|NP_615468.1| - 0.00013 21.8 0.1 0.00023 21.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|20089393|ref|NP_615468.1| - 0.00013 21.9 0.7 0.00013 21.9 0.7 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DUF2250 PF10007.9 gi|20089393|ref|NP_615468.1| - 0.00022 21.3 0.8 0.02 15.0 0.8 2.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|20089393|ref|NP_615468.1| - 0.00033 20.5 0.1 0.00064 19.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|20089393|ref|NP_615468.1| - 0.00063 19.9 0.9 0.0023 18.1 0.3 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|20089393|ref|NP_615468.1| - 0.0018 18.0 0.9 0.0032 17.3 0.1 1.8 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|20089393|ref|NP_615468.1| - 0.0031 17.8 0.3 0.013 15.8 0.1 1.9 2 0 0 2 2 2 1 Transcriptional regulator Sulfolobus_pRN PF05584.11 gi|20089393|ref|NP_615468.1| - 0.0043 17.0 0.8 0.02 14.9 0.1 2.2 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein DUF2513 PF10711.9 gi|20089393|ref|NP_615468.1| - 0.0055 17.0 0.2 0.012 15.9 0.1 1.6 2 0 0 2 2 1 1 Hypothetical protein (DUF2513) BLACT_WH PF17778.1 gi|20089393|ref|NP_615468.1| - 0.0057 16.6 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain DUF505 PF04458.12 gi|20089393|ref|NP_615468.1| - 0.0062 15.0 0.2 0.044 12.2 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF505) DUF4364 PF14277.6 gi|20089393|ref|NP_615468.1| - 0.0068 16.2 0.3 0.19 11.5 0.0 2.8 2 2 1 3 3 3 1 Domain of unknown function (DUF4364) B-block_TFIIIC PF04182.12 gi|20089393|ref|NP_615468.1| - 0.0099 16.0 0.1 0.023 14.9 0.1 1.6 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_IclR PF09339.10 gi|20089393|ref|NP_615468.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1495 PF07381.11 gi|20089393|ref|NP_615468.1| - 0.012 15.4 0.5 0.09 12.6 0.3 2.4 2 1 0 2 2 1 0 Winged helix DNA-binding domain (DUF1495) TFIIE_alpha PF02002.17 gi|20089393|ref|NP_615468.1| - 0.023 14.5 2.1 0.066 13.1 1.1 1.9 2 0 0 2 2 2 0 TFIIE alpha subunit Ribosomal_S25 PF03297.15 gi|20089393|ref|NP_615468.1| - 0.026 14.7 0.4 0.05 13.8 0.4 1.4 1 0 0 1 1 1 0 S25 ribosomal protein LexA_DNA_bind PF01726.16 gi|20089393|ref|NP_615468.1| - 0.037 13.8 0.1 0.07 12.9 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_29 PF13551.6 gi|20089393|ref|NP_615468.1| - 0.04 13.9 0.2 0.096 12.7 0.1 1.7 2 0 0 2 2 1 0 Winged helix-turn helix Replic_Relax PF13814.6 gi|20089393|ref|NP_615468.1| - 0.058 13.5 0.0 0.08 13.0 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation CrgA PF06781.12 gi|20089393|ref|NP_615468.1| - 0.064 13.3 0.3 0.1 12.7 0.3 1.4 1 0 0 1 1 1 0 Cell division protein CrgA FUR PF01475.19 gi|20089393|ref|NP_615468.1| - 0.065 13.4 0.2 0.14 12.3 0.2 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_10 PF04967.12 gi|20089393|ref|NP_615468.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF202 PF02656.15 gi|20089393|ref|NP_615468.1| - 0.092 13.2 0.7 0.15 12.5 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF3593 PF12159.8 gi|20089393|ref|NP_615468.1| - 0.11 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3593) HTH_DeoR PF08220.12 gi|20089393|ref|NP_615468.1| - 0.12 12.1 0.2 0.26 11.1 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Endonuclease_NS PF01223.23 gi|20089395|ref|NP_615470.1| - 0.031 14.1 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 DNA/RNA non-specific endonuclease FTP PF07504.13 gi|20089395|ref|NP_615470.1| - 0.032 14.0 1.1 0.083 12.7 0.2 2.1 2 0 0 2 2 2 0 Fungalysin/Thermolysin Propeptide Motif LPAM_1 PF08139.12 gi|20089395|ref|NP_615470.1| - 0.14 12.7 2.6 0.23 12.0 2.6 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Pentapeptide_4 PF13599.6 gi|20089396|ref|NP_615471.1| - 1.1e-20 73.5 27.2 1.5e-11 44.3 7.3 2.6 1 1 1 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|20089396|ref|NP_615471.1| - 1.4e-19 69.4 33.7 3.4e-08 33.0 2.0 4.1 2 2 1 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 gi|20089396|ref|NP_615471.1| - 1.5e-14 53.8 38.0 3.4e-05 23.9 4.3 4.2 2 2 2 4 4 4 4 Pentapeptide repeats (9 copies) CfAFP PF05264.11 gi|20089396|ref|NP_615471.1| - 0.0051 16.8 4.4 0.24 11.4 1.3 2.1 2 0 0 2 2 2 2 Choristoneura fumiferana antifreeze protein (CfAFP) Novirhabdo_Nv PF05554.11 gi|20089396|ref|NP_615471.1| - 5.6 6.7 10.3 3.3 7.5 0.4 2.9 2 1 1 3 3 3 0 Viral hemorrhagic septicemia virus non-virion protein Peptidase_C39_2 PF13529.6 gi|20089397|ref|NP_615472.1| - 3.9e-09 37.2 1.1 1.7e-08 35.2 0.0 2.4 2 1 1 3 3 3 1 Peptidase_C39 like family Peptidase_C70 PF12385.8 gi|20089397|ref|NP_615472.1| - 6.4e-06 26.2 0.0 1.2e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 Lactonase PF10282.9 gi|20089398|ref|NP_615473.1| - 1.7e-20 73.6 6.9 1.4e-08 34.4 0.5 3.9 1 1 3 4 4 4 3 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|20089398|ref|NP_615473.1| - 6.9e-10 38.9 10.3 0.00014 21.5 0.8 4.0 2 2 2 4 4 4 3 SMP-30/Gluconolactonase/LRE-like region Cytochrom_D1 PF02239.16 gi|20089398|ref|NP_615473.1| - 8e-07 27.9 7.1 0.031 12.8 0.4 4.0 1 1 3 4 4 4 4 Cytochrome D1 heme domain NHL PF01436.21 gi|20089398|ref|NP_615473.1| - 1.8e-06 27.7 8.4 2.2 8.5 0.6 6.3 5 0 0 5 5 5 1 NHL repeat Arylesterase PF01731.20 gi|20089398|ref|NP_615473.1| - 9.8e-05 22.5 12.7 0.81 9.9 0.0 6.3 2 2 5 7 7 7 2 Arylesterase Thioredox_DsbH PF03190.15 gi|20089398|ref|NP_615473.1| - 0.00093 19.2 0.6 5 7.0 0.0 4.2 2 1 2 4 4 4 2 Protein of unknown function, DUF255 PQQ PF01011.21 gi|20089398|ref|NP_615473.1| - 0.0037 17.1 0.3 0.0037 17.1 0.3 5.1 7 0 0 7 7 7 1 PQQ enzyme repeat PD40 PF07676.12 gi|20089398|ref|NP_615473.1| - 0.0052 16.7 0.1 35 4.5 0.0 4.5 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat PQQ_3 PF13570.6 gi|20089398|ref|NP_615473.1| - 0.15 12.6 18.6 2.8 8.6 0.0 6.0 6 0 0 6 6 6 0 PQQ-like domain PBCV_basic_adap PF08789.10 gi|20089398|ref|NP_615473.1| - 1 9.6 7.8 56 4.0 0.0 5.0 6 0 0 6 6 6 0 PBCV-specific basic adaptor domain UPF0228 PF05727.11 gi|20089400|ref|NP_615475.1| - 7.3e-52 174.4 4.0 1e-51 173.9 4.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) DUF5031 PF16434.5 gi|20089400|ref|NP_615475.1| - 0.015 14.5 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5031) Mpv17_PMP22 PF04117.12 gi|20089400|ref|NP_615475.1| - 0.077 13.2 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Mpv17 / PMP22 family B5 PF03484.15 gi|20089400|ref|NP_615475.1| - 0.077 13.3 0.0 0.28 11.5 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetase B5 domain Lactonase PF10282.9 gi|20089401|ref|NP_615476.1| - 7.5e-14 51.7 9.2 3e-05 23.4 0.9 3.4 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|20089401|ref|NP_615476.1| - 1.1e-13 51.3 9.4 1.4e-06 28.1 1.8 3.7 1 1 2 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region Cytochrom_D1 PF02239.16 gi|20089401|ref|NP_615476.1| - 1.1e-11 43.9 8.7 1.1e-05 24.2 0.8 3.8 1 1 2 4 4 4 4 Cytochrome D1 heme domain PD40 PF07676.12 gi|20089401|ref|NP_615476.1| - 1.3e-10 40.9 0.1 1.1 9.2 0.0 6.5 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat Arylesterase PF01731.20 gi|20089401|ref|NP_615476.1| - 3.7e-09 36.7 13.2 0.26 11.5 0.1 5.5 2 2 3 5 5 5 4 Arylesterase Str_synth PF03088.16 gi|20089401|ref|NP_615476.1| - 5.3e-09 36.1 0.7 0.95 9.6 0.0 5.1 2 2 3 5 5 5 3 Strictosidine synthase Arm-DNA-bind_3 PF13356.6 gi|20089401|ref|NP_615476.1| - 7.6e-05 23.0 0.2 14 6.1 0.0 5.0 1 1 2 3 3 3 0 Arm DNA-binding domain NHL PF01436.21 gi|20089401|ref|NP_615476.1| - 0.00059 19.8 18.5 0.23 11.6 0.0 7.0 7 0 0 7 7 6 2 NHL repeat SBP56 PF05694.11 gi|20089401|ref|NP_615476.1| - 0.00065 18.6 0.4 24 3.6 0.0 4.8 1 1 5 6 6 6 0 56kDa selenium binding protein (SBP56) DUF1513 PF07433.11 gi|20089401|ref|NP_615476.1| - 0.0017 17.5 1.8 0.44 9.6 0.2 3.1 1 1 1 3 3 3 2 Protein of unknown function (DUF1513) Me-amine-dh_H PF06433.11 gi|20089401|ref|NP_615476.1| - 0.0017 17.3 12.8 0.41 9.5 1.4 3.7 1 1 2 4 4 4 3 Methylamine dehydrogenase heavy chain (MADH) Kelch_6 PF13964.6 gi|20089401|ref|NP_615476.1| - 0.2 12.0 8.9 17 5.9 0.1 5.3 6 1 1 7 7 6 0 Kelch motif PCC_BT PF18140.1 gi|20089401|ref|NP_615476.1| - 0.72 10.2 12.1 3.8 7.9 1.5 3.7 1 1 2 3 3 3 0 Propionyl-coenzyme A carboxylase BT domain DUF1905 PF08922.11 gi|20089401|ref|NP_615476.1| - 2 8.5 6.8 66 3.7 0.1 4.8 4 1 2 6 6 6 0 Domain of unknown function (DUF1905) PBCV_basic_adap PF08789.10 gi|20089401|ref|NP_615476.1| - 4.5 7.5 10.7 91 3.3 0.3 4.9 5 0 0 5 5 5 0 PBCV-specific basic adaptor domain Mac PF12464.8 gi|20089402|ref|NP_615477.1| - 1.8e-16 60.1 0.4 3.3e-16 59.3 0.2 1.5 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.24 gi|20089402|ref|NP_615477.1| - 2.8e-10 39.5 14.2 4.4e-08 32.5 6.8 3.0 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20089402|ref|NP_615477.1| - 9.3e-07 28.5 5.4 9.3e-07 28.5 5.4 2.7 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase YrhK PF14145.6 gi|20089404|ref|NP_615479.1| - 3.5e-06 26.8 35.3 0.078 12.9 12.0 4.2 3 2 0 3 3 3 3 YrhK-like protein DUF4386 PF14329.6 gi|20089404|ref|NP_615479.1| - 0.087 12.7 19.5 0.085 12.7 3.5 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4386) DUF4131 PF13567.6 gi|20089404|ref|NP_615479.1| - 0.37 10.4 13.6 2.1 8.0 3.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2207 PF09972.9 gi|20089404|ref|NP_615479.1| - 2.4 6.8 13.8 3.2 6.4 1.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) GyrI-like PF06445.15 gi|20089405|ref|NP_615480.1| - 4.2e-31 108.3 0.8 4.8e-31 108.2 0.8 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|20089405|ref|NP_615480.1| - 2.2e-12 47.4 0.4 2.8e-12 47.0 0.4 1.2 1 0 0 1 1 1 1 Integron-associated effector binding protein Mis14 PF08641.12 gi|20089406|ref|NP_615481.1| - 0.055 13.8 0.0 0.071 13.4 0.0 1.2 1 0 0 1 1 1 0 Kinetochore protein Mis14 like SelB-wing_2 PF09106.11 gi|20089406|ref|NP_615481.1| - 0.077 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix TBPIP PF07106.13 gi|20089406|ref|NP_615481.1| - 0.077 12.9 0.2 0.14 12.2 0.1 1.5 1 1 1 2 2 2 0 TBPIP/Hop2 winged helix domain ParE_toxin PF05016.15 gi|20089407|ref|NP_615482.1| - 0.023 15.3 0.0 0.029 15.0 0.0 1.1 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE Arc_PepC_II PF06847.11 gi|20089408|ref|NP_615483.1| - 5.9e-31 106.8 0.2 1.6e-30 105.5 0.0 1.8 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|20089408|ref|NP_615483.1| - 1.1e-14 54.8 7.5 1.1e-14 54.8 7.5 2.1 1 1 1 2 2 2 1 Type IV leader peptidase family TP_methylase PF00590.20 gi|20089409|ref|NP_615484.1| - 1.4e-24 87.2 0.2 2.7e-23 83.0 0.2 2.0 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|20089410|ref|NP_615485.1| - 5.6e-52 176.6 0.5 8.3e-52 176.0 0.5 1.3 1 0 0 1 1 1 1 CbiD DNA_mis_repair PF01119.19 gi|20089411|ref|NP_615486.1| - 3.9e-38 129.8 0.0 6.8e-38 129.0 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.11 gi|20089411|ref|NP_615486.1| - 9.1e-34 116.3 0.0 2.1e-33 115.2 0.0 1.6 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.6 gi|20089411|ref|NP_615486.1| - 4.2e-14 52.5 0.9 6.2e-14 52.0 0.1 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|20089411|ref|NP_615486.1| - 6.9e-09 36.2 0.1 1.4e-08 35.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|20089412|ref|NP_615487.1| - 1.1e-85 286.4 0.7 2.2e-85 285.4 0.1 1.8 2 0 0 2 2 2 1 MutS domain V MutS_I PF01624.20 gi|20089412|ref|NP_615487.1| - 2e-44 150.4 0.0 7.6e-44 148.6 0.0 2.0 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.18 gi|20089412|ref|NP_615487.1| - 5.6e-43 147.4 1.8 7e-43 147.1 0.8 1.7 2 0 0 2 2 2 1 MutS domain III MutS_IV PF05190.18 gi|20089412|ref|NP_615487.1| - 1.4e-32 111.9 0.3 4.1e-32 110.4 0.3 1.9 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|20089412|ref|NP_615487.1| - 1.7e-24 86.6 0.0 7e-24 84.7 0.0 2.1 2 0 0 2 2 2 1 MutS domain II AAA_27 PF13514.6 gi|20089412|ref|NP_615487.1| - 0.0038 16.8 0.1 0.027 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20089412|ref|NP_615487.1| - 0.076 12.8 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RR_TM4-6 PF06459.12 gi|20089413|ref|NP_615488.1| - 0.17 11.7 27.2 0.17 11.7 27.2 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Zip PF02535.22 gi|20089413|ref|NP_615488.1| - 0.19 10.9 17.2 0.22 10.7 17.2 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter DUF2052 PF09747.9 gi|20089413|ref|NP_615488.1| - 0.48 10.5 32.1 0.68 10.0 32.1 1.3 1 0 0 1 1 1 0 Coiled-coil domain containing protein (DUF2052) Methyltransf_32 PF13679.6 gi|20089413|ref|NP_615488.1| - 0.49 10.4 4.9 0.65 10.0 4.9 1.3 1 0 0 1 1 1 0 Methyltransferase domain DDHD PF02862.17 gi|20089413|ref|NP_615488.1| - 0.61 10.2 9.7 0.8 9.8 9.7 1.2 1 0 0 1 1 1 0 DDHD domain SelP_N PF04592.14 gi|20089413|ref|NP_615488.1| - 0.78 9.1 14.0 0.94 8.8 14.0 1.1 1 0 0 1 1 1 0 Selenoprotein P, N terminal region NPR3 PF03666.13 gi|20089413|ref|NP_615488.1| - 1.2 7.8 21.5 1.3 7.7 21.5 1.0 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 XRN_M PF17846.1 gi|20089413|ref|NP_615488.1| - 1.9 7.4 14.2 1.9 7.4 14.2 1.0 1 0 0 1 1 1 0 Xrn1 helical domain Rtf2 PF04641.12 gi|20089413|ref|NP_615488.1| - 2.3 7.5 25.5 2.5 7.4 25.5 1.1 1 0 0 1 1 1 0 Rtf2 RING-finger DNA_pol_phi PF04931.13 gi|20089413|ref|NP_615488.1| - 3.7 5.5 39.4 4.5 5.3 39.4 1.1 1 0 0 1 1 1 0 DNA polymerase phi MCM_bind PF09739.9 gi|20089413|ref|NP_615488.1| - 5.1 5.4 18.9 5.8 5.2 18.9 1.0 1 0 0 1 1 1 0 Mini-chromosome maintenance replisome factor Presenilin PF01080.17 gi|20089413|ref|NP_615488.1| - 5.8 5.6 21.9 6.5 5.4 21.9 1.0 1 0 0 1 1 1 0 Presenilin Raftlin PF15250.6 gi|20089413|ref|NP_615488.1| - 5.9 5.5 16.3 6.2 5.5 16.3 1.0 1 0 0 1 1 1 0 Raftlin Folliculin PF11704.8 gi|20089413|ref|NP_615488.1| - 6.6 6.6 13.2 11 5.8 13.2 1.4 1 1 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport CobT PF06213.12 gi|20089413|ref|NP_615488.1| - 6.6 6.0 39.4 7.5 5.9 39.4 1.0 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF5308 PF17233.2 gi|20089413|ref|NP_615488.1| - 7.2 6.8 7.7 10 6.3 7.7 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5308) SID-1_RNA_chan PF13965.6 gi|20089413|ref|NP_615488.1| - 8 4.7 8.0 8.6 4.6 8.0 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 BUD22 PF09073.10 gi|20089413|ref|NP_615488.1| - 8.4 5.6 40.3 9.7 5.4 40.3 1.0 1 0 0 1 1 1 0 BUD22 CDP-OH_P_transf PF01066.21 gi|20089414|ref|NP_615489.1| - 5e-13 49.6 0.4 5e-13 49.6 0.4 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase GerA PF03323.13 gi|20089414|ref|NP_615489.1| - 0.17 10.3 0.8 0.24 9.8 0.8 1.1 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Ca_hom_mod PF14798.6 gi|20089414|ref|NP_615489.1| - 0.23 10.5 0.1 0.32 10.1 0.1 1.3 1 0 0 1 1 1 0 Calcium homeostasis modulator DUF2189 PF09955.9 gi|20089414|ref|NP_615489.1| - 0.23 11.7 7.5 0.051 13.8 1.9 2.3 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2189) CCG PF02754.16 gi|20089415|ref|NP_615490.1| - 2.8e-32 110.8 3.4 4.6e-15 55.6 0.3 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|20089415|ref|NP_615490.1| - 9.5e-08 32.4 13.5 8.3e-07 29.4 5.6 3.1 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089415|ref|NP_615490.1| - 4.4e-06 26.7 17.8 9e-06 25.7 9.1 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089415|ref|NP_615490.1| - 1.2e-05 25.3 18.4 0.0044 17.1 2.2 4.1 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20089415|ref|NP_615490.1| - 3.3e-05 24.4 9.1 3.3e-05 24.4 9.1 3.5 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089415|ref|NP_615490.1| - 3.4e-05 24.0 6.3 0.00063 20.0 0.9 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20089415|ref|NP_615490.1| - 3.5e-05 23.4 11.1 0.00014 21.5 1.8 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20089415|ref|NP_615490.1| - 0.00021 21.2 11.3 0.00074 19.5 2.3 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089415|ref|NP_615490.1| - 0.00027 21.5 24.4 0.00086 19.9 12.5 3.6 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089415|ref|NP_615490.1| - 0.00042 21.2 14.4 0.024 15.6 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|20089415|ref|NP_615490.1| - 0.00052 20.0 2.0 0.00052 20.0 2.0 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|20089415|ref|NP_615490.1| - 0.00088 19.8 7.1 0.28 11.7 1.3 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|20089415|ref|NP_615490.1| - 0.0024 17.9 16.6 0.04 14.0 1.2 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089415|ref|NP_615490.1| - 0.025 14.7 11.5 0.41 10.9 0.6 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089415|ref|NP_615490.1| - 0.074 14.0 4.4 0.074 14.0 4.4 4.4 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20089415|ref|NP_615490.1| - 3.4 8.5 15.6 0.69 10.7 1.1 3.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|20089415|ref|NP_615490.1| - 5 8.0 13.5 6.2 7.7 0.2 3.5 4 0 0 4 4 3 0 4Fe-4S dicluster domain B12-binding PF02310.19 gi|20089416|ref|NP_615491.1| - 1.1e-26 93.2 0.3 1.9e-26 92.5 0.3 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20089416|ref|NP_615491.1| - 2.4e-19 69.5 1.3 6.8e-19 68.1 1.3 1.8 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.11 gi|20089416|ref|NP_615491.1| - 0.047 12.4 0.0 0.058 12.1 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) MTTB PF06253.11 gi|20089417|ref|NP_615492.1| - 5e-96 321.7 0.1 6.6e-96 321.3 0.1 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.19 gi|20089418|ref|NP_615493.1| - 2.8e-23 82.2 0.5 4.8e-23 81.5 0.5 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20089418|ref|NP_615493.1| - 1.6e-20 73.3 1.8 1.6e-20 73.3 1.8 2.3 3 0 0 3 3 3 1 B12 binding domain EamA PF00892.20 gi|20089419|ref|NP_615494.1| - 6.7e-13 49.0 47.5 2.2e-06 27.9 16.7 3.4 3 1 0 3 3 3 3 EamA-like transporter family SepZ PF06066.11 gi|20089419|ref|NP_615494.1| - 0.57 10.4 5.2 2.7 8.3 2.3 2.7 2 0 0 2 2 2 0 SepZ Dimeth_Pyl PF09505.10 gi|20089421|ref|NP_615496.1| - 2.9e-265 880.0 7.4 3.3e-265 879.8 7.4 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) XFP_C PF09363.10 gi|20089421|ref|NP_615496.1| - 0.15 11.6 0.1 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 XFP C-terminal domain PepSY PF03413.19 gi|20089422|ref|NP_615497.1| - 8.2e-26 90.4 6.5 8.9e-13 48.6 0.7 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF5006 PF16397.5 gi|20089422|ref|NP_615497.1| - 0.0001 21.6 0.5 0.00043 19.6 0.1 2.1 2 1 1 3 3 3 1 Domain of unknown function (DUF5006) PepSY_2 PF13670.6 gi|20089422|ref|NP_615497.1| - 0.033 14.2 6.1 1.7 8.7 2.9 3.4 2 2 0 2 2 2 0 Peptidase propeptide and YPEB domain GvpH PF05455.11 gi|20089422|ref|NP_615497.1| - 0.097 12.7 5.2 0.046 13.8 3.0 1.5 1 1 0 1 1 1 0 GvpH tRNA-synt_1f PF01921.18 gi|20089423|ref|NP_615498.1| - 4.6e-132 440.3 0.0 5.8e-132 440.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|20089423|ref|NP_615498.1| - 3.2e-08 32.7 0.0 0.00064 18.6 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|20089423|ref|NP_615498.1| - 7.3e-05 22.3 0.0 0.32 10.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Methyltransf_11 PF08241.12 gi|20089424|ref|NP_615499.1| - 1.3e-16 61.0 0.0 2e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089424|ref|NP_615499.1| - 9e-16 58.4 0.0 1.6e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089424|ref|NP_615499.1| - 1.4e-12 47.7 0.0 1.8e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089424|ref|NP_615499.1| - 1.3e-08 35.5 0.0 2.1e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089424|ref|NP_615499.1| - 8.8e-08 32.1 0.0 1.1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20089424|ref|NP_615499.1| - 0.00033 20.0 0.0 0.00042 19.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|20089424|ref|NP_615499.1| - 0.00043 19.7 0.0 0.00059 19.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20089424|ref|NP_615499.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.12 gi|20089424|ref|NP_615499.1| - 0.18 11.4 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW BofA PF07441.11 gi|20089425|ref|NP_615500.1| - 3e-11 43.3 21.5 4e-11 43.0 21.5 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Nuc_deoxyrib_tr PF05014.15 gi|20089426|ref|NP_615501.1| - 7.4e-07 29.2 0.0 8.8e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Peptidase_U32 PF01136.19 gi|20089427|ref|NP_615502.1| - 1.6e-122 407.1 0.0 8.6e-89 296.7 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|20089427|ref|NP_615502.1| - 2.1e-26 92.7 0.1 4.8e-25 88.3 0.2 2.4 2 0 0 2 2 2 1 Collagenase Radical_SAM PF04055.21 gi|20089427|ref|NP_615502.1| - 0.017 15.5 0.1 2.5 8.4 0.1 3.6 4 1 1 5 5 5 0 Radical SAM superfamily Dus PF01207.17 gi|20089427|ref|NP_615502.1| - 0.048 12.7 0.0 0.32 10.1 0.0 2.3 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) MazG PF03819.17 gi|20089429|ref|NP_615504.1| - 1.9e-16 60.0 0.0 2.3e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|20089429|ref|NP_615504.1| - 0.00027 21.3 0.3 0.00033 21.0 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 gi|20089429|ref|NP_615504.1| - 0.0012 19.1 0.0 0.0018 18.5 0.0 1.2 1 0 0 1 1 1 1 MazG-like family DUF3782 PF12644.7 gi|20089429|ref|NP_615504.1| - 0.0093 16.1 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) His_biosynth PF00977.21 gi|20089430|ref|NP_615505.1| - 2.6e-90 301.9 0.2 3e-90 301.7 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|20089430|ref|NP_615505.1| - 6.7e-06 25.6 0.2 0.061 12.6 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|20089430|ref|NP_615505.1| - 1.2e-05 24.8 0.2 0.0084 15.5 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NMO PF03060.15 gi|20089430|ref|NP_615505.1| - 4.2e-05 23.1 0.1 0.21 10.9 0.1 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.17 gi|20089430|ref|NP_615505.1| - 0.00015 21.2 0.1 0.21 10.9 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase Dus PF01207.17 gi|20089430|ref|NP_615505.1| - 0.00023 20.3 0.0 0.0076 15.4 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|20089430|ref|NP_615505.1| - 0.00043 19.4 0.1 0.22 10.5 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|20089430|ref|NP_615505.1| - 0.0027 17.0 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|20089430|ref|NP_615505.1| - 0.11 12.0 0.1 0.29 10.6 0.1 1.7 1 0 0 1 1 1 0 PcrB family DNase-RNase PF02577.14 gi|20089431|ref|NP_615506.1| - 9.4e-38 128.8 0.1 1.1e-37 128.5 0.1 1.1 1 0 0 1 1 1 1 Bifunctional nuclease PCMT PF01135.19 gi|20089432|ref|NP_615507.1| - 1.1e-71 241.0 0.0 1.3e-71 240.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|20089432|ref|NP_615507.1| - 1.6e-12 47.5 0.0 3e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|20089432|ref|NP_615507.1| - 5.9e-08 32.7 0.0 9.3e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.18 gi|20089432|ref|NP_615507.1| - 4.2e-05 23.0 0.1 0.00029 20.3 0.0 2.2 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Fibrillarin PF01269.17 gi|20089432|ref|NP_615507.1| - 5e-05 22.5 0.0 8.9e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|20089432|ref|NP_615507.1| - 6.5e-05 23.6 0.0 0.00013 22.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|20089432|ref|NP_615507.1| - 0.00084 18.6 0.6 0.0026 17.0 0.0 2.0 3 0 0 3 3 3 1 O-methyltransferase Methyltransf_23 PF13489.6 gi|20089432|ref|NP_615507.1| - 0.001 18.9 0.0 0.0028 17.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|20089432|ref|NP_615507.1| - 0.0011 18.7 0.1 0.0032 17.1 0.0 1.8 2 1 0 2 2 2 1 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|20089432|ref|NP_615507.1| - 0.002 17.3 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|20089432|ref|NP_615507.1| - 0.0029 17.2 0.0 0.0047 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|20089432|ref|NP_615507.1| - 0.0036 18.3 0.0 0.022 15.8 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089432|ref|NP_615507.1| - 0.0047 17.6 0.0 0.021 15.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20089432|ref|NP_615507.1| - 0.0058 16.0 0.0 0.0078 15.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|20089432|ref|NP_615507.1| - 0.02 14.4 0.0 0.052 13.0 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase PrmA PF06325.13 gi|20089432|ref|NP_615507.1| - 0.058 12.8 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF938 PF06080.12 gi|20089432|ref|NP_615507.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_18 PF12847.7 gi|20089432|ref|NP_615507.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain PCMT PF01135.19 gi|20089433|ref|NP_615508.1| - 6.9e-71 238.3 0.0 8.5e-71 238.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|20089433|ref|NP_615508.1| - 6e-11 42.4 0.0 9.6e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|20089433|ref|NP_615508.1| - 1.7e-06 27.9 0.0 4.7e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|20089433|ref|NP_615508.1| - 3.7e-05 24.3 0.0 6.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|20089433|ref|NP_615508.1| - 7.8e-05 21.9 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.20 gi|20089433|ref|NP_615508.1| - 0.00019 20.6 0.0 0.00029 20.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|20089433|ref|NP_615508.1| - 0.00079 18.7 0.1 0.0021 17.2 0.0 1.7 2 0 0 2 2 2 1 O-methyltransferase Ubie_methyltran PF01209.18 gi|20089433|ref|NP_615508.1| - 0.0014 18.0 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|20089433|ref|NP_615508.1| - 0.0015 18.2 0.0 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_11 PF08241.12 gi|20089433|ref|NP_615508.1| - 0.0042 17.7 0.1 0.018 15.7 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20089433|ref|NP_615508.1| - 0.015 14.9 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|20089433|ref|NP_615508.1| - 0.015 15.1 0.0 0.033 14.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|20089433|ref|NP_615508.1| - 0.054 13.5 0.3 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|20089433|ref|NP_615508.1| - 0.063 14.3 0.1 0.27 12.3 0.0 2.1 2 1 0 2 2 1 0 Methyltransferase domain CMAS PF02353.20 gi|20089433|ref|NP_615508.1| - 0.17 11.2 0.0 0.28 10.4 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF3464 PF11947.8 gi|20089433|ref|NP_615508.1| - 0.38 10.5 1.1 0.65 9.7 1.1 1.3 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 zinc_ribbon_4 PF13717.6 gi|20089434|ref|NP_615509.1| - 0.0011 18.8 0.6 0.003 17.5 0.6 1.8 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|20089434|ref|NP_615509.1| - 0.015 15.1 0.2 0.07 12.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|20089434|ref|NP_615509.1| - 0.018 15.1 0.6 0.036 14.1 0.6 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like ATG19_autophagy PF12744.7 gi|20089434|ref|NP_615509.1| - 0.052 12.7 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Autophagy protein Atg19, Atg8-binding Zn_Tnp_IS1 PF03811.13 gi|20089434|ref|NP_615509.1| - 0.56 10.0 2.4 1.8 8.4 2.4 1.8 1 1 0 1 1 1 0 InsA N-terminal domain DUF2387 PF09526.10 gi|20089434|ref|NP_615509.1| - 1.1 9.4 4.2 0.3 11.3 0.8 1.8 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.6 gi|20089435|ref|NP_615510.1| - 0.014 15.8 0.2 0.025 15.0 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|20089435|ref|NP_615510.1| - 0.026 14.4 0.2 0.052 13.5 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Elf1 PF05129.13 gi|20089435|ref|NP_615510.1| - 0.041 13.9 0.1 0.081 13.0 0.1 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2_3 PF13878.6 gi|20089435|ref|NP_615510.1| - 0.28 11.0 1.0 0.79 9.6 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1 PF03811.13 gi|20089435|ref|NP_615510.1| - 3.5 7.4 5.8 9.2 6.1 5.1 2.1 2 1 0 2 2 2 0 InsA N-terminal domain CTP-dep_RFKase PF01982.16 gi|20089436|ref|NP_615511.1| - 2.3e-47 160.1 0.0 3.9e-47 159.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_12 PF08461.10 gi|20089436|ref|NP_615511.1| - 0.046 13.7 2.5 0.085 12.8 0.1 2.4 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain DHBP_synthase PF00926.19 gi|20089437|ref|NP_615512.1| - 2.3e-58 196.9 0.0 2.8e-58 196.6 0.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PEP-utilizers PF00391.23 gi|20089437|ref|NP_615512.1| - 0.066 12.9 0.0 0.37 10.5 0.0 2.0 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain Cation_efflux PF01545.21 gi|20089438|ref|NP_615513.1| - 2.4e-45 154.8 11.2 2.9e-45 154.5 11.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|20089438|ref|NP_615513.1| - 1.3e-21 76.5 0.5 2.1e-21 75.8 0.5 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter AA_permease_2 PF13520.6 gi|20089438|ref|NP_615513.1| - 0.0012 17.8 3.4 0.0017 17.3 3.4 1.1 1 0 0 1 1 1 1 Amino acid permease Chorismate_synt PF01264.21 gi|20089439|ref|NP_615514.1| - 1.3e-144 480.9 0.1 1.5e-144 480.8 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase PAS_9 PF13426.7 gi|20089440|ref|NP_615515.1| - 4.7e-60 200.3 0.1 2.5e-16 59.8 0.0 6.6 6 0 0 6 6 6 5 PAS domain PAS PF00989.25 gi|20089440|ref|NP_615515.1| - 7.7e-57 190.2 0.0 5.1e-16 58.7 0.0 7.1 6 1 0 6 6 6 6 PAS fold PAS_4 PF08448.10 gi|20089440|ref|NP_615515.1| - 6.9e-48 161.5 0.3 7.7e-12 45.4 0.0 6.9 7 0 0 7 7 6 5 PAS fold MEDS PF14417.6 gi|20089440|ref|NP_615515.1| - 9.2e-48 162.1 2.1 6.5e-47 159.4 0.0 3.3 4 0 0 4 4 4 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_3 PF08447.12 gi|20089440|ref|NP_615515.1| - 9.9e-47 157.2 0.0 3.6e-18 65.6 0.1 5.9 5 0 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|20089440|ref|NP_615515.1| - 2.9e-34 116.5 0.0 5.9e-10 38.9 0.0 6.1 5 0 0 5 5 5 4 PAS domain HisKA_2 PF07568.12 gi|20089440|ref|NP_615515.1| - 8.7e-33 112.3 2.5 8.7e-33 112.3 2.5 2.6 2 0 0 2 2 2 1 Histidine kinase GAF_2 PF13185.6 gi|20089440|ref|NP_615515.1| - 8.2e-19 68.3 0.0 1.2e-17 64.5 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|20089440|ref|NP_615515.1| - 5.5e-11 42.6 0.5 0.0018 18.4 0.0 6.9 7 1 0 7 7 7 1 PAS fold HATPase_c PF02518.26 gi|20089440|ref|NP_615515.1| - 2e-09 37.9 0.2 7.8e-09 36.0 0.2 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|20089440|ref|NP_615515.1| - 9.7e-07 29.5 0.0 0.00011 22.8 0.0 3.0 3 0 0 3 3 2 1 GAF domain HATPase_c_2 PF13581.6 gi|20089440|ref|NP_615515.1| - 2e-05 24.6 0.0 4.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20089440|ref|NP_615515.1| - 0.00064 20.4 0.5 0.00064 20.4 0.5 2.2 2 0 0 2 2 1 1 HWE histidine kinase PAS_6 PF08348.11 gi|20089440|ref|NP_615515.1| - 0.0011 18.9 0.0 27 4.7 0.0 4.4 4 0 0 4 4 4 0 YheO-like PAS domain PAS_12 PF18095.1 gi|20089440|ref|NP_615515.1| - 0.013 15.1 0.0 4.2 7.0 0.0 3.4 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain DUF1366 PF07104.11 gi|20089440|ref|NP_615515.1| - 0.044 13.5 0.7 0.27 10.9 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1366) GAF_3 PF13492.6 gi|20089440|ref|NP_615515.1| - 0.054 13.9 0.0 0.31 11.4 0.0 2.4 2 0 0 2 2 2 0 GAF domain SPOB_a PF14689.6 gi|20089440|ref|NP_615515.1| - 0.06 13.1 0.9 0.24 11.2 0.1 2.6 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain sCache_3_3 PF17202.4 gi|20089440|ref|NP_615515.1| - 0.13 12.7 0.0 7.4 7.0 0.0 3.2 3 0 0 3 3 3 0 Single cache domain 3 DUF3268 PF11672.8 gi|20089440|ref|NP_615515.1| - 0.16 12.3 0.0 0.62 10.4 0.0 2.0 2 0 0 2 2 1 0 zinc-finger-containing domain DUF5344 PF17279.2 gi|20089440|ref|NP_615515.1| - 0.16 12.6 6.8 2.5 8.8 1.6 3.1 2 0 0 2 2 2 0 Family of unknown function (DUF5344) Clathrin_lg_ch PF01086.17 gi|20089440|ref|NP_615515.1| - 3.5 7.6 9.6 0.27 11.3 3.8 2.1 2 0 0 2 2 1 0 Clathrin light chain PAS_3 PF08447.12 gi|20089441|ref|NP_615516.1| - 9.1e-67 221.4 1.9 7.3e-21 74.3 0.0 6.6 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.7 gi|20089441|ref|NP_615516.1| - 6.1e-54 180.7 0.4 9.7e-16 57.9 0.1 5.8 5 0 0 5 5 5 5 PAS domain PocR PF10114.9 gi|20089441|ref|NP_615516.1| - 1.1e-48 165.1 0.5 3.6e-48 163.4 0.0 2.3 2 0 0 2 2 2 1 Sensory domain found in PocR PAS PF00989.25 gi|20089441|ref|NP_615516.1| - 2.7e-47 159.4 0.0 7.1e-16 58.2 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|20089441|ref|NP_615516.1| - 2.8e-46 156.3 0.0 2.1e-14 53.7 0.0 5.5 5 0 0 5 5 5 4 PAS fold MEDS PF14417.6 gi|20089441|ref|NP_615516.1| - 2.1e-38 131.7 0.0 1.2e-37 129.2 0.0 2.4 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.12 gi|20089441|ref|NP_615516.1| - 1.3e-30 105.3 0.7 1.3e-30 105.3 0.7 2.9 3 0 0 3 3 3 1 Histidine kinase PAS_8 PF13188.7 gi|20089441|ref|NP_615516.1| - 1.3e-19 69.8 0.0 4.6e-08 32.9 0.0 5.3 5 0 0 5 5 5 3 PAS domain HATPase_c PF02518.26 gi|20089441|ref|NP_615516.1| - 5e-11 43.1 0.1 2.1e-10 41.1 0.1 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20089441|ref|NP_615516.1| - 3.6e-05 23.7 0.0 8.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|20089441|ref|NP_615516.1| - 0.0017 18.5 4.5 2.6 8.2 0.0 5.6 6 2 0 6 6 6 1 PAS fold HWE_HK PF07536.14 gi|20089441|ref|NP_615516.1| - 0.0066 17.1 0.0 0.028 15.1 0.0 2.2 1 0 0 1 1 1 1 HWE histidine kinase MEKHLA PF08670.11 gi|20089441|ref|NP_615516.1| - 0.01 15.8 0.0 3.8 7.4 0.0 2.7 1 1 1 2 2 2 0 MEKHLA domain SPOB_a PF14689.6 gi|20089441|ref|NP_615516.1| - 0.11 12.2 0.2 0.52 10.0 0.1 2.3 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF3160 PF11369.8 gi|20089445|ref|NP_615520.1| - 3.2e-235 782.4 4.6 3.7e-235 782.2 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.8 gi|20089446|ref|NP_615521.1| - 9.5e-229 761.0 0.5 1.1e-228 760.8 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.8 gi|20089447|ref|NP_615522.1| - 3.7e-232 772.3 5.4 4.4e-232 772.0 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) UDPG_MGDP_dh_N PF03721.14 gi|20089448|ref|NP_615523.1| - 0.062 12.9 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF3160 PF11369.8 gi|20089449|ref|NP_615524.1| - 1.1e-240 800.5 8.7 1.3e-240 800.3 8.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) DUF3160 PF11369.8 gi|20089450|ref|NP_615525.1| - 3.5e-238 792.2 12.3 4.1e-238 792.0 12.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) Hat1_N PF10394.9 gi|20089450|ref|NP_615525.1| - 0.13 12.5 3.8 2 8.7 0.2 2.8 3 0 0 3 3 3 0 Histone acetyl transferase HAT1 N-terminus DUF4404 PF14357.6 gi|20089450|ref|NP_615525.1| - 8.1 7.2 8.9 2.5 8.8 2.7 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4404) LolA_like PF17131.4 gi|20089452|ref|NP_615527.1| - 8.7e-13 48.4 0.0 2.1e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 Outer membrane lipoprotein-sorting protein DUF4367 PF14285.6 gi|20089452|ref|NP_615527.1| - 8.6e-06 26.2 4.1 1.4e-05 25.5 0.2 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4367) LolA PF03548.15 gi|20089452|ref|NP_615527.1| - 2.7e-05 23.9 0.0 0.14 11.8 0.0 2.3 2 0 0 2 2 2 2 Outer membrane lipoprotein carrier protein LolA DUF1329 PF07044.11 gi|20089452|ref|NP_615527.1| - 4.1e-05 23.0 0.0 9.1e-05 21.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1329) DUF2092 PF09865.9 gi|20089452|ref|NP_615527.1| - 0.00023 20.6 0.0 0.0048 16.3 0.0 2.3 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MucB_RseB PF03888.14 gi|20089452|ref|NP_615527.1| - 0.005 16.4 0.0 0.0098 15.5 0.0 1.5 1 0 0 1 1 1 1 MucB/RseB N-terminal domain DUF1571 PF07608.11 gi|20089452|ref|NP_615527.1| - 0.014 14.8 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) Peptidase_C39_2 PF13529.6 gi|20089453|ref|NP_615528.1| - 9.4e-20 71.6 1.6 1.2e-19 71.3 0.4 1.8 2 0 0 2 2 2 1 Peptidase_C39 like family F-actin_cap_A PF01267.17 gi|20089454|ref|NP_615529.1| - 0.036 13.5 0.2 0.052 13.0 0.2 1.2 1 0 0 1 1 1 0 F-actin capping protein alpha subunit HKR_ArcB_TM PF18415.1 gi|20089456|ref|NP_615531.1| - 0.18 12.6 0.6 0.18 12.6 0.6 2.2 3 0 0 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain PrgI PF12666.7 gi|20089456|ref|NP_615531.1| - 2.6 8.8 8.8 7.3 7.4 5.2 2.6 1 1 1 2 2 2 0 PrgI family protein DUF4131 PF13567.6 gi|20089460|ref|NP_615535.1| - 0.86 9.2 8.1 3.5 7.2 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Radical_SAM PF04055.21 gi|20089462|ref|NP_615537.1| - 1.5e-25 90.5 0.2 1e-24 87.8 0.0 2.4 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|20089462|ref|NP_615537.1| - 4.9e-10 39.8 1.8 9.3e-10 38.9 1.8 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|20089462|ref|NP_615537.1| - 5.8e-10 39.6 0.0 1.2e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20089462|ref|NP_615537.1| - 1e-06 28.9 0.0 2.1e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glycos_trans_3N PF02885.17 gi|20089462|ref|NP_615537.1| - 0.09 12.6 0.2 0.36 10.7 0.1 2.1 2 1 0 2 2 2 0 Glycosyl transferase family, helical bundle domain Hydrolase_6 PF13344.6 gi|20089462|ref|NP_615537.1| - 0.17 12.0 0.0 2.7 8.2 0.0 2.7 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase AsnC_trans_reg2 PF17805.1 gi|20089463|ref|NP_615538.1| - 2.7e-22 78.7 0.0 5.5e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|20089463|ref|NP_615538.1| - 1.2e-09 37.8 0.1 2.4e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|20089463|ref|NP_615538.1| - 0.0015 18.0 6.5 0.0089 15.6 3.2 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20089463|ref|NP_615538.1| - 0.022 14.8 0.1 0.037 14.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|20089463|ref|NP_615538.1| - 0.033 13.9 0.2 0.081 12.7 0.2 1.6 1 1 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.19 gi|20089463|ref|NP_615538.1| - 0.052 13.4 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AsnC_trans_reg2 PF17805.1 gi|20089464|ref|NP_615539.1| - 1.5e-32 111.6 0.0 3.4e-32 110.4 0.0 1.6 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|20089464|ref|NP_615539.1| - 3.5e-06 26.7 0.0 9.4e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|20089464|ref|NP_615539.1| - 0.0016 17.9 0.4 0.12 11.9 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FERM_f0 PF16511.5 gi|20089464|ref|NP_615539.1| - 0.013 15.8 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 N-terminal or F0 domain of Talin-head FERM MarR_2 PF12802.7 gi|20089464|ref|NP_615539.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family DDRGK PF09756.9 gi|20089464|ref|NP_615539.1| - 0.064 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_20 PF12840.7 gi|20089464|ref|NP_615539.1| - 0.073 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|20089464|ref|NP_615539.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 gi|20089464|ref|NP_615539.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_Tnp_ISL3 PF13542.6 gi|20089464|ref|NP_615539.1| - 0.14 11.6 0.0 0.55 9.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 AsnC_trans_reg PF01037.21 gi|20089464|ref|NP_615539.1| - 0.15 12.0 0.0 0.92 9.5 0.0 2.0 2 0 0 2 2 2 0 Lrp/AsnC ligand binding domain HEPN PF05168.14 gi|20089464|ref|NP_615539.1| - 0.15 12.2 0.0 0.68 10.1 0.0 1.8 2 0 0 2 2 2 0 HEPN domain MarR PF01047.22 gi|20089464|ref|NP_615539.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 MarR family FaeA PF04703.12 gi|20089464|ref|NP_615539.1| - 0.17 12.2 0.0 0.95 9.9 0.0 1.9 2 0 0 2 2 2 0 FaeA-like protein NAD_binding_7 PF13241.6 gi|20089465|ref|NP_615540.1| - 1.9e-18 66.8 0.0 3e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|20089465|ref|NP_615540.1| - 0.00071 19.0 0.0 0.0014 18.0 0.0 1.5 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Sacchrp_dh_NADP PF03435.18 gi|20089465|ref|NP_615540.1| - 0.032 14.5 0.0 0.47 10.7 0.1 2.1 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|20089466|ref|NP_615541.1| - 9.2e-43 145.6 1.0 1.2e-42 145.2 0.1 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|20089466|ref|NP_615541.1| - 1.8e-37 128.3 0.0 5e-37 126.9 0.0 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|20089466|ref|NP_615541.1| - 3.4e-20 72.3 1.5 8.6e-20 71.0 1.5 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|20089466|ref|NP_615541.1| - 2.3e-05 24.0 0.1 4.8e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|20089466|ref|NP_615541.1| - 3.3e-05 23.3 0.0 7e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20089466|ref|NP_615541.1| - 5.1e-05 23.8 0.1 5.1e-05 23.8 0.1 2.6 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|20089466|ref|NP_615541.1| - 0.00066 20.1 0.1 0.0027 18.1 0.0 2.2 2 0 0 2 2 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|20089466|ref|NP_615541.1| - 0.0011 19.3 0.4 0.0011 19.3 0.4 3.2 2 1 1 3 3 3 1 Saccharopine dehydrogenase NADP binding domain OCD_Mu_crystall PF02423.15 gi|20089466|ref|NP_615541.1| - 0.0034 16.4 0.3 0.0085 15.1 0.0 1.7 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.19 gi|20089466|ref|NP_615541.1| - 0.027 13.8 0.0 2.9 7.2 0.0 2.5 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UDPG_MGDP_dh_N PF03721.14 gi|20089466|ref|NP_615541.1| - 0.028 14.0 1.0 6 6.4 0.3 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.21 gi|20089466|ref|NP_615541.1| - 0.033 13.5 0.5 0.085 12.2 0.5 1.6 1 0 0 1 1 1 0 ThiF family TrkA_N PF02254.18 gi|20089466|ref|NP_615541.1| - 0.068 13.4 1.4 0.24 11.7 0.1 2.6 2 0 0 2 2 2 0 TrkA-N domain OrfB_IS605 PF01385.19 gi|20089466|ref|NP_615541.1| - 6.1 7.1 8.7 5.8 7.2 5.8 2.4 2 1 1 3 3 3 0 Probable transposase DUF724 PF05266.14 gi|20089466|ref|NP_615541.1| - 9.6 6.0 10.8 0.18 11.7 3.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) ALAD PF00490.21 gi|20089467|ref|NP_615542.1| - 1.4e-146 487.6 0.1 1.6e-146 487.5 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase rve PF00665.26 gi|20089468|ref|NP_615543.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20089468|ref|NP_615543.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20089468|ref|NP_615543.1| - 7.5e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20089468|ref|NP_615543.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20089468|ref|NP_615543.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089468|ref|NP_615543.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20089468|ref|NP_615543.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20089468|ref|NP_615543.1| - 0.11 12.2 0.5 0.5 10.1 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment Trypan_PARP PF05887.11 gi|20089469|ref|NP_615544.1| - 0.00096 19.1 0.8 0.0012 18.9 0.8 1.1 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Aminotran_3 PF00202.21 gi|20089470|ref|NP_615545.1| - 1.7e-67 227.8 0.0 2.2e-67 227.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.20 gi|20089471|ref|NP_615546.1| - 1.8e-70 236.6 0.0 2.4e-70 236.2 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|20089471|ref|NP_615546.1| - 2.6e-13 50.1 0.0 7.2e-13 48.7 0.0 1.8 1 1 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DHO_dh PF01180.21 gi|20089472|ref|NP_615547.1| - 2.4e-63 214.1 0.3 2.9e-63 213.8 0.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|20089472|ref|NP_615547.1| - 1.1e-11 44.4 0.4 1.7e-10 40.5 0.4 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|20089472|ref|NP_615547.1| - 0.00026 20.5 1.1 0.00037 20.0 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|20089472|ref|NP_615547.1| - 0.00051 19.5 5.4 0.00051 19.5 5.4 1.7 2 1 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.12 gi|20089472|ref|NP_615547.1| - 0.064 12.4 0.9 0.093 11.9 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) DUF2108 PF09881.9 gi|20089472|ref|NP_615547.1| - 0.11 12.5 0.2 0.29 11.1 0.2 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2108) G3P_antiterm PF04309.12 gi|20089472|ref|NP_615547.1| - 0.18 11.2 0.4 3.5 7.0 0.1 2.3 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|20089472|ref|NP_615547.1| - 3.2 6.7 8.1 0.79 8.7 4.8 1.7 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|20089472|ref|NP_615547.1| - 3.5 6.8 7.3 0.29 10.4 0.5 2.4 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG DHODB_Fe-S_bind PF10418.9 gi|20089473|ref|NP_615548.1| - 1.8e-11 43.7 4.6 2.4e-11 43.2 3.7 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|20089473|ref|NP_615548.1| - 7.1e-06 26.6 0.0 2.3e-05 25.0 0.0 1.9 2 1 0 2 2 2 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|20089473|ref|NP_615548.1| - 0.14 12.5 0.0 1.1 9.7 0.0 2.2 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|20089473|ref|NP_615548.1| - 0.22 11.7 0.1 1.7 8.8 0.1 2.1 2 0 0 2 2 2 0 Ferric reductase NAD binding domain FAA_hydrolase PF01557.18 gi|20089474|ref|NP_615549.1| - 2.1e-70 236.8 0.0 2.4e-70 236.6 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|20089474|ref|NP_615549.1| - 0.074 14.0 0.0 0.21 12.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) TrmB PF01978.19 gi|20089475|ref|NP_615550.1| - 0.0035 17.2 0.2 0.013 15.4 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|20089475|ref|NP_615550.1| - 0.01 15.7 0.2 0.019 14.8 0.2 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family RepL PF05732.11 gi|20089475|ref|NP_615550.1| - 0.021 14.3 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.20 gi|20089475|ref|NP_615550.1| - 0.058 13.7 0.0 0.082 13.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|20089475|ref|NP_615550.1| - 0.071 13.0 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|20089475|ref|NP_615550.1| - 0.093 12.3 0.6 0.15 11.6 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20089475|ref|NP_615550.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|20089475|ref|NP_615550.1| - 0.17 12.3 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein tRNA-synt_1c PF00749.21 gi|20089476|ref|NP_615551.1| - 1.5e-66 224.4 0.0 1.9e-66 224.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|20089476|ref|NP_615551.1| - 4.2e-26 91.9 0.0 1.3e-25 90.3 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain NosD PF05048.13 gi|20089477|ref|NP_615552.1| - 2.1e-43 148.3 30.0 3.1e-43 147.8 30.0 1.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20089477|ref|NP_615552.1| - 7.1e-13 48.7 25.7 1.7e-12 47.4 24.9 1.8 1 1 1 2 2 2 1 Right handed beta helix region Pectinesterase PF01095.19 gi|20089477|ref|NP_615552.1| - 0.0022 16.8 0.1 0.0034 16.1 0.1 1.3 1 0 0 1 1 1 1 Pectinesterase EssA PF10661.9 gi|20089477|ref|NP_615552.1| - 0.01 15.7 0.7 0.033 14.0 0.1 2.0 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein EssA tRNA_anti-codon PF01336.25 gi|20089479|ref|NP_615554.1| - 8e-07 29.0 0.1 0.61 10.1 0.0 3.9 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain RPA_C PF08784.11 gi|20089480|ref|NP_615555.1| - 0.13 12.9 0.0 0.22 12.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal 2-Hacid_dh_C PF02826.19 gi|20089481|ref|NP_615556.1| - 1.7e-60 203.5 0.0 2.7e-60 202.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|20089481|ref|NP_615556.1| - 1.8e-41 140.9 0.7 2.7e-40 137.1 0.3 2.5 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|20089481|ref|NP_615556.1| - 2e-06 27.4 1.0 6.4e-06 25.8 0.0 2.4 3 0 0 3 3 3 1 ACT domain IlvN PF07991.12 gi|20089481|ref|NP_615556.1| - 1e-05 25.2 0.1 3.4e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|20089481|ref|NP_615556.1| - 0.023 14.9 1.2 0.056 13.6 0.1 2.2 2 1 1 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|20089481|ref|NP_615556.1| - 0.1 13.2 1.9 3.6 8.2 0.0 3.3 3 1 1 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent DUF2240 PF09999.9 gi|20089482|ref|NP_615557.1| - 7.3e-55 184.6 0.0 8.3e-55 184.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) TPP_enzyme_N PF02776.18 gi|20089483|ref|NP_615558.1| - 2.5e-31 108.6 0.1 6.2e-31 107.3 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|20089483|ref|NP_615558.1| - 8.4e-20 70.9 0.0 3e-19 69.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|20089483|ref|NP_615558.1| - 9.7e-20 70.9 0.0 4.7e-19 68.7 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ribosomal_L18 PF17135.4 gi|20089484|ref|NP_615559.1| - 8.9e-11 41.5 0.0 1.1e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|20089484|ref|NP_615559.1| - 1.1e-07 32.6 0.0 5.8e-07 30.2 0.0 2.0 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Dimerisation PF08100.11 gi|20089484|ref|NP_615559.1| - 0.11 12.5 0.0 0.59 10.2 0.0 2.0 2 0 0 2 2 2 0 Dimerisation domain Trp_Tyr_perm PF03222.13 gi|20089484|ref|NP_615559.1| - 0.22 10.5 0.0 0.29 10.1 0.0 1.1 1 0 0 1 1 1 0 Tryptophan/tyrosine permease family Ribosomal_L13 PF00572.18 gi|161484940|ref|NP_615560.2| - 4.9e-12 46.2 0.0 3.2e-10 40.3 0.0 2.1 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|20089486|ref|NP_615561.1| - 3.9e-32 111.3 0.1 4.4e-32 111.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|20089487|ref|NP_615562.1| - 2.2e-29 101.5 0.3 2.4e-29 101.4 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|20089488|ref|NP_615563.1| - 4.9e-12 45.6 0.1 5.5e-12 45.4 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.20 gi|20089489|ref|NP_615564.1| - 6.9e-24 84.3 0.0 3.2e-14 52.7 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|20089489|ref|NP_615564.1| - 0.16 11.5 0.1 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Memo PF01875.17 gi|20089490|ref|NP_615565.1| - 2e-78 263.3 0.0 2.3e-78 263.1 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|20089490|ref|NP_615565.1| - 0.027 13.5 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase LeuA_dimer PF08502.10 gi|20089490|ref|NP_615565.1| - 0.067 13.1 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain GHMP_kinases_N PF00288.26 gi|20089491|ref|NP_615566.1| - 7.3e-16 58.2 0.7 7.3e-16 58.2 0.7 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|20089491|ref|NP_615566.1| - 2.4e-10 40.6 0.3 5.7e-10 39.4 0.3 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|20089491|ref|NP_615566.1| - 0.012 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|20089492|ref|NP_615567.1| - 8.8e-43 146.6 0.0 1e-42 146.4 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|20089493|ref|NP_615568.1| - 1.6e-30 106.3 1.7 6.2e-21 74.8 1.0 2.4 1 1 2 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|20089493|ref|NP_615568.1| - 1.2e-06 27.7 5.2 0.009 15.0 0.1 3.8 3 1 1 4 4 4 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|20089493|ref|NP_615568.1| - 0.00026 20.3 3.2 0.0067 15.7 0.1 2.5 1 1 1 2 2 2 2 Dihydroorotate dehydrogenase NMO PF03060.15 gi|20089493|ref|NP_615568.1| - 0.00048 19.6 0.2 0.00048 19.6 0.2 2.4 3 0 0 3 3 3 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|20089493|ref|NP_615568.1| - 0.0025 17.0 1.2 0.0038 16.4 0.7 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|20089493|ref|NP_615568.1| - 0.056 12.9 0.9 1.6 8.1 0.1 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|20089493|ref|NP_615568.1| - 0.17 11.3 0.3 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Lactamase_B_2 PF12706.7 gi|20089494|ref|NP_615569.1| - 2.1e-09 37.2 1.7 7.6e-09 35.4 0.1 2.4 3 0 0 3 3 3 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|20089494|ref|NP_615569.1| - 9.9e-09 35.0 0.8 3e-08 33.5 0.1 2.1 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|20089494|ref|NP_615569.1| - 5.6e-08 33.0 0.1 1.2e-07 32.0 0.1 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily polyprenyl_synt PF00348.17 gi|20089495|ref|NP_615570.1| - 2.3e-70 236.6 0.0 2.7e-70 236.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Presenilin PF01080.17 gi|20089496|ref|NP_615571.1| - 8.7 5.0 5.6 9.1 4.9 5.6 1.0 1 0 0 1 1 1 0 Presenilin PEP-utilizers_C PF02896.18 gi|20089497|ref|NP_615572.1| - 9.6e-93 310.5 0.1 1.5e-92 309.8 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|20089497|ref|NP_615572.1| - 1.5e-64 218.4 0.0 3.9e-37 128.3 0.0 3.3 1 1 2 3 3 3 3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|20089497|ref|NP_615572.1| - 6e-28 96.4 1.2 1.3e-27 95.3 1.2 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Gar1 PF04410.14 gi|20089498|ref|NP_615573.1| - 5.6e-09 36.0 0.0 5.8e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|20089499|ref|NP_615574.1| - 1.5e-44 149.9 2.0 3.1e-21 75.2 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|20089499|ref|NP_615574.1| - 1.5e-18 66.0 0.9 1.5e-18 66.0 0.9 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|20089499|ref|NP_615574.1| - 0.00037 20.4 0.7 0.00089 19.1 0.7 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Sigma70_r4 PF04545.16 gi|20089499|ref|NP_615574.1| - 0.0035 16.8 0.5 0.019 14.4 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 Lar_restr_allev PF14354.6 gi|20089499|ref|NP_615574.1| - 0.0052 17.1 1.4 0.049 14.0 0.3 2.7 3 0 0 3 3 3 1 Restriction alleviation protein Lar Cyclin_C PF02984.19 gi|20089499|ref|NP_615574.1| - 0.0062 16.6 0.0 5.3 7.2 0.0 2.6 3 0 0 3 3 2 2 Cyclin, C-terminal domain RPA_interact_C PF14768.6 gi|20089499|ref|NP_615574.1| - 0.0081 16.7 0.0 0.6 10.7 0.0 2.5 2 0 0 2 2 2 1 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|20089499|ref|NP_615574.1| - 0.015 15.1 0.4 0.057 13.3 0.2 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DZR PF12773.7 gi|20089499|ref|NP_615574.1| - 0.067 13.2 1.1 0.37 10.8 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|20089499|ref|NP_615574.1| - 0.12 12.1 1.5 0.49 10.2 1.5 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20089499|ref|NP_615574.1| - 0.16 12.0 0.3 0.16 12.0 0.3 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain HTH_31 PF13560.6 gi|20089499|ref|NP_615574.1| - 0.2 12.0 3.7 7.7 6.9 0.1 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|20089499|ref|NP_615574.1| - 0.32 11.1 6.4 0.19 11.9 0.4 3.1 2 1 1 3 3 3 0 Zinc ribbon domain Methyltransf_13 PF08421.11 gi|20089499|ref|NP_615574.1| - 0.48 10.7 5.6 0.72 10.1 0.1 2.8 2 1 1 3 3 3 0 Putative zinc binding domain Ribosomal_S27e PF01667.17 gi|20089499|ref|NP_615574.1| - 0.5 10.1 1.8 0.5 10.1 0.2 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|20089499|ref|NP_615574.1| - 1.3 8.5 4.6 18 4.9 4.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|20089499|ref|NP_615574.1| - 3 7.8 5.9 3.9 7.5 2.5 3.0 2 1 1 3 3 3 0 Nudix N-terminal LysE PF01810.18 gi|20089500|ref|NP_615575.1| - 9.9e-29 100.2 16.3 1.2e-28 99.9 16.3 1.1 1 0 0 1 1 1 1 LysE type translocator YdjM PF04307.14 gi|20089501|ref|NP_615576.1| - 0.093 12.0 1.6 0.1 11.9 1.6 1.1 1 0 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase Met_10 PF02475.16 gi|20089502|ref|NP_615577.1| - 2.3e-62 210.3 0.0 2.9e-62 210.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|20089502|ref|NP_615577.1| - 2.9e-15 55.9 0.1 6.2e-15 54.8 0.1 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|20089502|ref|NP_615577.1| - 2.4e-08 33.7 0.0 7.8e-08 32.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|20089502|ref|NP_615577.1| - 7.1e-07 29.1 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089502|ref|NP_615577.1| - 1.9e-06 28.5 0.0 9.5e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|20089502|ref|NP_615577.1| - 7e-06 25.6 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|20089502|ref|NP_615577.1| - 7.7e-06 25.7 0.0 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TRM PF02005.16 gi|20089502|ref|NP_615577.1| - 0.00011 21.5 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|20089502|ref|NP_615577.1| - 0.00017 21.2 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 gi|20089502|ref|NP_615577.1| - 0.00021 21.0 0.0 0.0015 18.2 0.0 2.0 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|20089502|ref|NP_615577.1| - 0.00052 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|20089502|ref|NP_615577.1| - 0.0018 18.3 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase RrnaAD PF00398.20 gi|20089502|ref|NP_615577.1| - 0.0022 17.1 0.0 0.0033 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 gi|20089502|ref|NP_615577.1| - 0.0035 18.4 0.0 0.0086 17.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|20089502|ref|NP_615577.1| - 0.0046 16.4 0.0 0.0074 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PRMT5 PF05185.16 gi|20089502|ref|NP_615577.1| - 0.0062 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase FtsJ PF01728.19 gi|20089502|ref|NP_615577.1| - 0.015 15.4 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 gi|20089502|ref|NP_615577.1| - 0.019 15.6 0.0 0.044 14.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|20089502|ref|NP_615577.1| - 0.02 14.2 0.0 0.035 13.4 0.0 1.4 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.12 gi|20089502|ref|NP_615577.1| - 0.024 15.3 0.0 0.048 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089502|ref|NP_615577.1| - 0.034 13.5 0.0 0.05 12.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|20089502|ref|NP_615577.1| - 0.037 13.8 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF43 PF01861.16 gi|20089502|ref|NP_615577.1| - 0.045 13.0 0.0 0.14 11.3 0.0 1.8 1 1 1 2 2 2 0 Branched-chain polyamine synthase A C-terminal domain Methyltrans_SAM PF10672.9 gi|20089502|ref|NP_615577.1| - 0.061 12.5 0.0 0.084 12.0 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase TrkA_N PF02254.18 gi|20089502|ref|NP_615577.1| - 0.071 13.4 0.0 0.74 10.1 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain tRNA_U5-meth_tr PF05958.11 gi|20089502|ref|NP_615577.1| - 0.13 11.2 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N6_N4_Mtase PF01555.18 gi|20089502|ref|NP_615577.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltransf_16 PF10294.9 gi|20089502|ref|NP_615577.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase NAD_binding_2 PF03446.15 gi|20089503|ref|NP_615578.1| - 2.7e-44 151.1 0.0 5.1e-44 150.2 0.1 1.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|20089503|ref|NP_615578.1| - 4e-21 75.5 0.0 7.1e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Shikimate_DH PF01488.20 gi|20089503|ref|NP_615578.1| - 4.8e-08 33.2 0.0 9e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|20089503|ref|NP_615578.1| - 3e-07 30.9 0.0 8.3e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|20089503|ref|NP_615578.1| - 3.3e-07 30.4 0.0 9.2e-06 25.6 0.0 2.6 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|20089503|ref|NP_615578.1| - 7.4e-07 28.7 0.0 1.5e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|20089503|ref|NP_615578.1| - 2.1e-05 24.2 0.0 5.7e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|20089503|ref|NP_615578.1| - 2.2e-05 24.1 0.0 4.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|20089503|ref|NP_615578.1| - 0.0028 17.9 0.0 0.0084 16.4 0.0 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Glyco_trans_4_2 PF13477.6 gi|20089503|ref|NP_615578.1| - 0.0075 16.3 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like NAD_binding_10 PF13460.6 gi|20089503|ref|NP_615578.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|20089503|ref|NP_615578.1| - 0.11 12.9 0.0 1.1 9.7 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding GDP_Man_Dehyd PF16363.5 gi|20089503|ref|NP_615578.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase TrkA_N PF02254.18 gi|20089503|ref|NP_615578.1| - 0.13 12.5 0.0 0.62 10.3 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain MFS_3 PF05977.13 gi|20089504|ref|NP_615579.1| - 4.5e-165 550.0 26.0 5.4e-165 549.7 26.0 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|20089504|ref|NP_615579.1| - 6.7e-25 87.8 54.0 9.2e-25 87.3 54.0 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily ABM PF03992.16 gi|20089504|ref|NP_615579.1| - 0.00091 19.3 0.1 0.0018 18.4 0.1 1.5 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase MFS_1_like PF12832.7 gi|20089504|ref|NP_615579.1| - 0.81 8.5 20.1 0.79 8.5 4.9 2.3 2 0 0 2 2 2 0 MFS_1 like family AhpC-TSA PF00578.21 gi|20089505|ref|NP_615580.1| - 9.1e-29 99.9 0.0 1.1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|20089505|ref|NP_615580.1| - 7.3e-18 64.7 0.0 8e-18 64.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|20089505|ref|NP_615580.1| - 0.027 14.4 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Cation_efflux PF01545.21 gi|20089506|ref|NP_615581.1| - 2.4e-47 161.2 10.3 2.9e-47 161.0 10.3 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|20089506|ref|NP_615581.1| - 1.9e-25 88.8 0.5 3e-25 88.1 0.5 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter AMP-binding_C_2 PF14535.6 gi|20089506|ref|NP_615581.1| - 0.026 14.8 0.1 0.05 13.9 0.1 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain MASE3 PF17159.4 gi|20089507|ref|NP_615582.1| - 6e-85 284.4 18.6 7.7e-85 284.1 18.6 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain HisKA_2 PF07568.12 gi|20089507|ref|NP_615582.1| - 7.7e-33 112.4 0.8 1.8e-32 111.3 0.8 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|20089507|ref|NP_615582.1| - 7.8e-18 64.6 0.0 1.6e-17 63.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|20089507|ref|NP_615582.1| - 1.9e-09 38.0 0.0 4.5e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|20089507|ref|NP_615582.1| - 2.9e-06 27.5 0.0 1.5e-05 25.2 0.0 2.2 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.14 gi|20089507|ref|NP_615582.1| - 0.00083 20.0 1.4 0.0012 19.5 0.1 1.9 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20089507|ref|NP_615582.1| - 0.0098 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain TMF_TATA_bd PF12325.8 gi|20089507|ref|NP_615582.1| - 0.044 14.0 2.1 0.092 13.0 2.1 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding MASE3 PF17159.4 gi|20089508|ref|NP_615583.1| - 6.2e-86 287.7 18.2 8.3e-86 287.3 18.2 1.2 1 0 0 1 1 1 1 Membrane-associated sensor domain HisKA_2 PF07568.12 gi|20089508|ref|NP_615583.1| - 3e-33 113.7 1.0 6.1e-33 112.7 1.0 1.6 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|20089508|ref|NP_615583.1| - 1.2e-16 60.7 0.0 3.7e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|20089508|ref|NP_615583.1| - 5.8e-09 36.4 0.1 1.8e-08 34.8 0.1 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|20089508|ref|NP_615583.1| - 0.00042 20.5 0.0 0.0013 19.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.14 gi|20089508|ref|NP_615583.1| - 0.00077 20.1 0.1 0.0016 19.1 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20089508|ref|NP_615583.1| - 0.0044 17.0 0.0 0.0081 16.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Glyco_hydro_18 PF00704.28 gi|20089509|ref|NP_615584.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 18 DUF1724 PF08350.10 gi|20089510|ref|NP_615585.1| - 1.9e-16 59.9 0.0 4.6e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089510|ref|NP_615585.1| - 0.00012 21.9 0.3 0.00021 21.1 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20089510|ref|NP_615585.1| - 0.0052 16.7 0.2 0.013 15.5 0.2 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|20089510|ref|NP_615585.1| - 0.0056 16.7 0.0 0.0099 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089510|ref|NP_615585.1| - 0.085 12.9 0.0 7.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.19 gi|20089510|ref|NP_615585.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|20089510|ref|NP_615585.1| - 0.2 11.7 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain TackOD1 PF18551.1 gi|20089511|ref|NP_615586.1| - 0.00082 19.1 2.6 0.00082 19.1 2.6 1.6 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 zf-P11 PF03854.14 gi|20089511|ref|NP_615586.1| - 0.011 15.4 1.2 0.024 14.3 1.2 1.5 1 0 0 1 1 1 0 P-11 zinc finger Tam41_Mmp37 PF09139.11 gi|20089511|ref|NP_615586.1| - 0.12 11.8 0.5 0.4 10.1 0.1 1.8 1 1 1 2 2 2 0 Phosphatidate cytidylyltransferase, mitochondrial zf-C3HC4_3 PF13920.6 gi|20089511|ref|NP_615586.1| - 1.7 8.6 10.6 0.35 10.8 2.5 2.8 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|20089511|ref|NP_615586.1| - 3.1 7.9 10.3 2.4 8.2 4.9 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-RING_4 PF14570.6 gi|20089511|ref|NP_615586.1| - 3.6 7.5 8.3 0.36 10.7 1.5 2.6 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain Alpha-2-MRAP_N PF06400.11 gi|20089511|ref|NP_615586.1| - 5.6 7.0 8.7 0.19 11.7 2.7 1.7 2 0 0 2 2 2 0 Alpha-2-macroglobulin RAP, N-terminal domain DnaJ_CXXCXGXG PF00684.19 gi|20089512|ref|NP_615587.1| - 1.1e-05 25.6 15.6 4.1e-05 23.9 15.7 2.0 1 1 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|20089512|ref|NP_615587.1| - 0.00048 20.0 15.3 0.0077 16.2 2.0 2.4 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|20089512|ref|NP_615587.1| - 0.00091 19.2 6.9 0.0027 17.7 7.1 1.7 1 1 1 2 2 2 2 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|20089512|ref|NP_615587.1| - 0.14 11.9 0.2 0.14 11.9 0.2 3.5 4 0 0 4 4 4 0 A2L zinc ribbon domain DUF5351 PF17302.2 gi|20089512|ref|NP_615587.1| - 0.41 10.9 19.4 4.5 7.5 0.4 4.3 3 1 0 3 3 3 0 Family of unknown function (DUF5351) DUF2318 PF10080.9 gi|20089512|ref|NP_615587.1| - 0.44 10.7 6.2 18 5.5 3.4 2.7 1 1 2 3 3 3 0 Predicted membrane protein (DUF2318) Zn-ribbon_8 PF09723.10 gi|20089512|ref|NP_615587.1| - 0.81 9.9 10.1 0.25 11.5 3.1 2.8 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|20089512|ref|NP_615587.1| - 1.1 9.3 5.9 7.9 6.5 3.4 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|20089512|ref|NP_615587.1| - 1.7 8.6 7.4 2.1e+02 1.9 7.4 2.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF4428 PF14471.6 gi|20089512|ref|NP_615587.1| - 3.2 7.8 6.5 7.3 6.6 2.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) PRC PF05239.16 gi|20089514|ref|NP_615589.1| - 2.3e-28 98.1 0.0 1.7e-18 66.5 0.0 2.1 2 0 0 2 2 2 2 PRC-barrel domain PRC PF05239.16 gi|20089515|ref|NP_615590.1| - 1.3e-58 195.0 0.0 7.3e-19 67.6 0.0 3.4 3 0 0 3 3 3 3 PRC-barrel domain Robl_LC7 PF03259.17 gi|20089515|ref|NP_615590.1| - 0.0033 17.2 0.0 11 5.8 0.0 3.3 3 0 0 3 3 3 2 Roadblock/LC7 domain OapA PF04225.12 gi|20089515|ref|NP_615590.1| - 0.057 13.5 1.0 30 4.8 0.0 3.7 4 0 0 4 4 4 0 Opacity-associated protein A LysM-like domain DUF362 PF04015.12 gi|20089516|ref|NP_615591.1| - 3.5e-50 171.1 0.0 5.3e-50 170.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|20089516|ref|NP_615591.1| - 5.7e-07 29.1 19.0 5.2e-05 22.9 6.0 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20089516|ref|NP_615591.1| - 1e-06 28.7 11.9 2.3e-06 27.6 11.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20089516|ref|NP_615591.1| - 2.4e-05 24.8 15.1 5.4e-05 23.7 15.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089516|ref|NP_615591.1| - 4.2e-05 23.4 16.2 0.0091 16.0 2.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20089516|ref|NP_615591.1| - 0.00015 21.8 14.3 0.00044 20.3 14.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089516|ref|NP_615591.1| - 0.00029 20.9 15.4 0.00056 20.0 15.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089516|ref|NP_615591.1| - 0.00073 19.5 1.2 0.00073 19.5 1.2 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20089516|ref|NP_615591.1| - 0.13 13.0 6.9 1.2 10.0 0.2 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain TMEM214 PF10151.9 gi|20089516|ref|NP_615591.1| - 0.3 9.5 0.0 0.4 9.1 0.0 1.1 1 0 0 1 1 1 0 TMEM214, C-terminal, caspase 4 activator Fer4_13 PF13370.6 gi|20089516|ref|NP_615591.1| - 0.38 11.3 11.6 3.1 8.4 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|20089516|ref|NP_615591.1| - 0.91 10.5 14.5 1.1 10.2 2.3 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|20089516|ref|NP_615591.1| - 3.3 8.4 20.0 1 10.0 3.2 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089516|ref|NP_615591.1| - 8.8 6.9 20.7 3.4e+02 1.8 17.9 2.9 3 1 0 3 3 2 0 4Fe-4S dicluster domain HTH_5 PF01022.20 gi|20089517|ref|NP_615592.1| - 1.2e-05 25.1 0.2 2.3e-05 24.2 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20089517|ref|NP_615592.1| - 0.00027 20.9 0.1 0.00056 19.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20089517|ref|NP_615592.1| - 0.00058 19.4 0.3 0.002 17.6 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|20089517|ref|NP_615592.1| - 0.0035 17.4 0.3 0.0063 16.6 0.2 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) RP-C PF03428.13 gi|20089517|ref|NP_615592.1| - 0.007 16.0 0.2 0.015 15.0 0.1 1.6 1 1 0 1 1 1 1 Replication protein C N-terminal domain MarR PF01047.22 gi|20089517|ref|NP_615592.1| - 0.0089 15.9 0.2 0.021 14.8 0.2 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|20089517|ref|NP_615592.1| - 0.014 15.2 0.1 0.029 14.3 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB YojJ PF10372.9 gi|20089517|ref|NP_615592.1| - 0.12 12.5 0.1 0.51 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus z-alpha PF02295.17 gi|20089517|ref|NP_615592.1| - 0.18 11.9 3.3 0.49 10.5 0.3 2.2 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain XhlA PF10779.9 gi|20089517|ref|NP_615592.1| - 2.2 8.5 8.3 29 5.0 0.4 3.1 3 0 0 3 3 3 0 Haemolysin XhlA Cpn10 PF00166.21 gi|161484939|ref|NP_615593.2| - 3e-27 94.5 0.7 3.4e-27 94.3 0.7 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Cpn60_TCP1 PF00118.24 gi|20089519|ref|NP_615594.1| - 3e-100 336.2 18.4 6.4e-100 335.1 18.4 1.5 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family GTP-bdg_M PF16360.5 gi|20089519|ref|NP_615594.1| - 0.023 15.3 0.3 0.055 14.1 0.3 1.6 1 0 0 1 1 1 0 GTP-binding GTPase Middle Region NIBRIN_BRCT_II PF16508.5 gi|20089519|ref|NP_615594.1| - 0.49 10.7 3.9 1.8 8.9 0.8 3.2 2 1 0 2 2 2 0 Second BRCT domain on Nijmegen syndrome breakage protein RNase_H PF00075.24 gi|20089520|ref|NP_615595.1| - 1e-05 25.7 0.0 1.6e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 RNase H Vut_1 PF02592.15 gi|20089521|ref|NP_615596.1| - 1.1e-46 158.9 9.6 1.7e-46 158.2 9.6 1.3 1 0 0 1 1 1 1 Putative vitamin uptake transporter Aminotran_1_2 PF00155.21 gi|20089523|ref|NP_615598.1| - 8.9e-63 212.6 0.0 1e-62 212.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|20089523|ref|NP_615598.1| - 1.7e-10 40.8 0.0 2.4e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|20089523|ref|NP_615598.1| - 6.9e-07 28.1 0.0 1.1e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|20089523|ref|NP_615598.1| - 8.1e-07 28.6 0.0 1.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|20089523|ref|NP_615598.1| - 2.7e-05 23.3 0.0 5.7e-05 22.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|20089523|ref|NP_615598.1| - 0.0015 17.3 0.0 0.002 16.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III OKR_DC_1 PF01276.20 gi|20089523|ref|NP_615598.1| - 0.011 14.4 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain PEGA PF08308.11 gi|20089524|ref|NP_615599.1| - 1.4e-34 117.8 4.8 3.5e-21 74.8 0.5 2.4 1 1 1 2 2 2 2 PEGA domain DUF1533 PF07550.11 gi|20089524|ref|NP_615599.1| - 0.0012 18.7 0.1 0.87 9.5 0.1 2.8 2 0 0 2 2 2 2 Protein of unknown function (DUF1533) CarbopepD_reg_2 PF13715.6 gi|20089524|ref|NP_615599.1| - 0.013 15.4 0.6 9.4 6.3 0.0 3.3 3 0 0 3 3 3 0 CarboxypepD_reg-like domain DUF382 PF04037.13 gi|20089524|ref|NP_615599.1| - 7.3 6.8 8.4 2.1 8.5 4.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF382) Rubrerythrin PF02915.17 gi|20089526|ref|NP_615601.1| - 2.1e-24 86.5 6.9 9.8e-23 81.1 6.9 2.1 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|20089526|ref|NP_615601.1| - 0.0019 18.1 2.1 0.0075 16.2 2.1 1.9 1 1 0 1 1 1 1 Ferritin-like domain Zn-ribbon_8 PF09723.10 gi|20089526|ref|NP_615601.1| - 0.011 15.8 1.8 0.048 13.8 1.6 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|20089526|ref|NP_615601.1| - 0.022 14.8 0.3 0.034 14.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|20089526|ref|NP_615601.1| - 0.066 13.1 0.1 0.099 12.5 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Ogr_Delta PF04606.12 gi|20089526|ref|NP_615601.1| - 0.076 13.0 1.1 5.1 7.2 0.3 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_4 PF14570.6 gi|20089526|ref|NP_615601.1| - 0.12 12.2 0.6 0.22 11.4 0.6 1.4 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain RecR PF02132.15 gi|20089526|ref|NP_615601.1| - 0.21 11.2 0.6 0.45 10.1 0.6 1.6 1 0 0 1 1 1 0 RecR protein DNA_ligase_ZBD PF03119.16 gi|20089526|ref|NP_615601.1| - 0.76 9.9 0.1 0.76 9.9 0.1 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|20089526|ref|NP_615601.1| - 9.1 6.2 8.0 8.4 6.3 0.3 2.9 2 1 1 3 3 3 0 Rad50 zinc hook motif PHP PF02811.19 gi|20089528|ref|NP_615603.1| - 0.00036 20.9 0.1 0.0047 17.2 0.0 2.1 2 0 0 2 2 2 1 PHP domain PHP_C PF13263.6 gi|20089528|ref|NP_615603.1| - 0.0073 16.0 0.0 0.021 14.6 0.0 1.7 1 0 0 1 1 1 1 PHP-associated zinc_ribbon_4 PF13717.6 gi|20089528|ref|NP_615603.1| - 0.051 13.5 2.0 0.082 12.8 1.2 1.9 2 0 0 2 2 2 0 zinc-ribbon domain PHD_4 PF16866.5 gi|20089528|ref|NP_615603.1| - 0.5 10.5 2.9 2.1 8.5 1.0 2.4 2 0 0 2 2 2 0 PHD-finger PAC2 PF09754.9 gi|20089529|ref|NP_615604.1| - 1.6e-51 175.3 0.0 1.8e-51 175.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|20089530|ref|NP_615605.1| - 8.9e-25 86.5 0.9 9.4e-25 86.4 0.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|20089530|ref|NP_615605.1| - 2.7e-05 23.6 0.7 3.7e-05 23.2 0.7 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|20089530|ref|NP_615605.1| - 0.0018 16.2 0.2 0.0018 16.2 0.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-FPG_IleRS PF06827.14 gi|20089530|ref|NP_615605.1| - 0.013 15.4 6.4 0.47 10.4 0.8 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.8 gi|20089530|ref|NP_615605.1| - 0.013 15.4 4.2 0.023 14.6 3.7 1.7 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.11 gi|20089530|ref|NP_615605.1| - 0.013 15.5 1.7 0.015 15.3 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) NRDD PF13597.6 gi|20089530|ref|NP_615605.1| - 0.015 14.1 0.8 0.015 14.1 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TF_Zn_Ribbon PF08271.12 gi|20089530|ref|NP_615605.1| - 0.054 13.0 6.1 1.5 8.4 0.5 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|20089530|ref|NP_615605.1| - 0.16 11.7 3.8 1.9 8.2 0.3 2.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|20089530|ref|NP_615605.1| - 0.18 12.0 4.5 1.3 9.2 4.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|20089530|ref|NP_615605.1| - 0.18 11.8 0.8 0.2 11.7 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|20089530|ref|NP_615605.1| - 0.33 10.4 4.8 5.1 6.7 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|20089530|ref|NP_615605.1| - 0.9 9.3 5.9 0.48 10.2 0.6 2.1 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 EIF_2_alpha PF07541.12 gi|20089531|ref|NP_615606.1| - 4e-26 91.4 0.0 6.6e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|20089531|ref|NP_615606.1| - 1.5e-13 50.9 1.1 2.2e-13 50.4 0.2 1.7 2 0 0 2 2 2 1 S1 RNA binding domain YcaO_C PF18381.1 gi|20089531|ref|NP_615606.1| - 0.046 13.6 0.1 0.082 12.8 0.1 1.4 1 0 0 1 1 1 0 YcaO cyclodehydratase C-terminal domain Ribosomal_S27e PF01667.17 gi|20089532|ref|NP_615607.1| - 4.8e-25 87.0 1.0 5.3e-25 86.9 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-C2H2_12 PF18658.1 gi|20089532|ref|NP_615607.1| - 0.0019 17.7 0.2 0.0035 16.9 0.0 1.5 1 1 1 2 2 2 1 Zinc-finger C2H2-type Zn_Tnp_IS91 PF14319.6 gi|20089532|ref|NP_615607.1| - 0.0079 16.2 0.2 0.0083 16.1 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-RING_10 PF16685.5 gi|20089532|ref|NP_615607.1| - 0.018 15.2 0.2 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 zinc RING finger of MSL2 HypA PF01155.19 gi|20089532|ref|NP_615607.1| - 0.023 14.7 0.3 0.026 14.5 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE PF01363.21 gi|20089532|ref|NP_615607.1| - 0.026 14.6 0.3 0.029 14.5 0.3 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-BED PF02892.15 gi|20089532|ref|NP_615607.1| - 0.034 14.2 0.6 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger zinc_ribbon_6 PF14599.6 gi|20089532|ref|NP_615607.1| - 0.099 12.7 3.0 0.37 10.8 2.9 2.0 2 1 1 3 3 3 0 Zinc-ribbon Ribosomal_L44 PF00935.19 gi|20089533|ref|NP_615608.1| - 4.7e-25 87.9 6.7 6e-25 87.5 6.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Cys_rich_CPXG PF14255.6 gi|20089533|ref|NP_615608.1| - 0.12 12.3 1.2 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF1062 PF06353.12 gi|20089533|ref|NP_615608.1| - 0.73 10.7 2.6 1.5 9.7 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1062) TMCO5 PF14992.6 gi|20089534|ref|NP_615609.1| - 0.12 11.9 2.0 0.15 11.6 2.0 1.1 1 0 0 1 1 1 0 TMCO5 family Phasin PF05597.11 gi|20089534|ref|NP_615609.1| - 0.15 12.1 0.1 0.26 11.3 0.1 1.3 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DNA_primase_S PF01896.19 gi|20089535|ref|NP_615610.1| - 5.1e-22 78.8 0.0 8e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 DNA primase small subunit FGE-sulfatase PF03781.16 gi|20089536|ref|NP_615611.1| - 1.4e-53 182.2 9.3 8.6e-53 179.6 9.3 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DHC PF09626.10 gi|20089536|ref|NP_615611.1| - 0.0078 17.1 0.1 0.017 16.0 0.1 1.5 1 0 0 1 1 1 1 Dihaem cytochrome c I-set PF07679.16 gi|20089537|ref|NP_615612.1| - 0.0096 16.0 0.3 7 6.8 0.1 3.0 2 1 1 3 3 3 2 Immunoglobulin I-set domain DUF11 PF01345.18 gi|20089537|ref|NP_615612.1| - 0.0097 16.2 12.9 0.53 10.6 2.7 2.7 1 1 0 2 2 2 2 Domain of unknown function DUF11 fn3_3 PF14686.6 gi|20089537|ref|NP_615612.1| - 0.014 15.2 0.7 2.2 8.1 0.1 2.6 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II ComP_DUS PF16732.5 gi|20089537|ref|NP_615612.1| - 0.05 14.5 2.3 1.3 10.0 0.2 2.3 2 0 0 2 2 2 0 Type IV minor pilin ComP, DNA uptake sequence receptor FbpA PF05833.11 gi|20089538|ref|NP_615613.1| - 2.3e-120 402.4 2.7 3.1e-120 402.0 2.7 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|20089538|ref|NP_615613.1| - 4.2e-25 88.5 0.0 8.8e-25 87.5 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain Rotamase_2 PF13145.6 gi|20089538|ref|NP_615613.1| - 9.5 7.1 12.6 1.8 9.4 3.3 2.9 2 0 0 2 2 2 0 PPIC-type PPIASE domain eRF1_1 PF03463.15 gi|20089539|ref|NP_615614.1| - 5.5e-29 100.8 0.5 8.6e-29 100.2 0.5 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|20089539|ref|NP_615614.1| - 1.1e-23 83.9 0.7 3.2e-23 82.4 0.4 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|20089539|ref|NP_615614.1| - 1.4e-10 41.6 0.0 1.2e-09 38.5 0.0 2.2 1 1 0 1 1 1 1 eRF1 domain 2 S-layer PF07752.11 gi|20089540|ref|NP_615615.1| - 3e-126 419.7 22.5 6.4e-66 222.0 8.3 2.2 2 0 0 2 2 2 2 S-layer protein AFOR_N PF02730.15 gi|20089540|ref|NP_615615.1| - 0.00012 22.0 0.0 0.21 11.4 0.0 2.4 2 0 0 2 2 2 2 Aldehyde ferredoxin oxidoreductase, N-terminal domain IBV_3C PF03620.13 gi|20089540|ref|NP_615615.1| - 0.0047 17.4 0.3 4.8 7.7 0.0 2.4 2 0 0 2 2 2 2 IBV 3C protein JmjC PF02373.22 gi|20089540|ref|NP_615615.1| - 0.025 15.0 0.0 11 6.5 0.0 2.8 2 0 0 2 2 2 0 JmjC domain, hydroxylase DUF3922 PF13059.6 gi|20089540|ref|NP_615615.1| - 0.039 14.4 7.0 0.51 10.8 0.7 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3992) FTP PF07504.13 gi|20089540|ref|NP_615615.1| - 0.051 13.4 0.1 9.1 6.2 0.0 3.1 2 0 0 2 2 2 0 Fungalysin/Thermolysin Propeptide Motif Lipocalin_4 PF13648.6 gi|20089540|ref|NP_615615.1| - 0.15 13.1 22.1 0.14 13.1 0.4 4.8 4 2 0 4 4 4 0 Lipocalin-like domain Phasin PF05597.11 gi|20089540|ref|NP_615615.1| - 0.16 12.0 0.1 21 5.1 0.0 2.4 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Phage_sheath_1N PF17481.2 gi|20089540|ref|NP_615615.1| - 0.67 10.5 4.4 17 5.9 0.4 3.0 2 0 0 2 2 2 0 Phage tail sheath protein beta-sandwich domain DUF1614 PF07758.11 gi|20089541|ref|NP_615616.1| - 1.6e-57 194.2 13.8 2.5e-57 193.6 13.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) ABC2_membrane_3 PF12698.7 gi|20089541|ref|NP_615616.1| - 0.002 17.3 3.5 0.002 17.3 3.5 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein DisA_N PF02457.16 gi|20089542|ref|NP_615617.1| - 2.9e-21 75.3 6.7 1.3e-20 73.2 0.3 2.5 3 0 0 3 3 3 2 DisA bacterial checkpoint controller nucleotide-binding LigT_PEase PF02834.16 gi|20089543|ref|NP_615618.1| - 1.7e-29 101.9 0.1 6e-17 61.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|20089543|ref|NP_615618.1| - 6.8e-13 48.8 0.0 1.2e-12 48.0 0.0 1.4 1 1 1 2 2 2 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|20089543|ref|NP_615618.1| - 8.5e-08 32.3 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain ApbE PF02424.15 gi|20089544|ref|NP_615619.1| - 2.5e-79 266.5 0.0 2.9e-79 266.2 0.0 1.0 1 0 0 1 1 1 1 ApbE family ETRAMP PF09716.10 gi|20089544|ref|NP_615619.1| - 0.16 12.0 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Cytochrome_C7 PF14522.6 gi|20089545|ref|NP_615620.1| - 2e-05 24.5 22.0 2.3 8.3 15.2 4.7 3 2 1 4 4 4 3 Cytochrome c7 and related cytochrome c EF-hand_5 PF13202.6 gi|20089545|ref|NP_615620.1| - 0.00024 20.4 2.0 0.005 16.3 0.0 2.4 1 1 1 2 2 2 1 EF hand EF-hand_1 PF00036.32 gi|20089545|ref|NP_615620.1| - 0.004 16.6 0.9 0.13 11.9 0.0 2.5 1 1 1 2 2 2 1 EF hand Dockerin_1 PF00404.18 gi|20089545|ref|NP_615620.1| - 0.056 13.7 1.5 0.81 9.9 0.0 2.5 1 1 1 2 2 2 0 Dockerin type I domain EF-hand_6 PF13405.6 gi|20089545|ref|NP_615620.1| - 0.074 13.0 0.4 0.87 9.7 0.0 2.5 1 1 1 2 2 2 0 EF-hand domain CytoC_RC PF02276.18 gi|20089545|ref|NP_615620.1| - 0.12 11.7 1.1 0.65 9.3 0.3 2.4 3 0 0 3 3 3 0 Photosynthetic reaction centre cytochrome C subunit Cytochrom_c3_2 PF14537.6 gi|20089545|ref|NP_615620.1| - 0.16 12.4 24.5 1.2 9.6 2.0 5.0 4 2 1 5 5 5 0 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|20089545|ref|NP_615620.1| - 0.82 9.5 19.3 12 5.7 1.3 5.5 5 0 0 5 5 5 0 Doubled CXXCH motif (Paired_CXXCH_1) TFIIS_C PF01096.18 gi|20089545|ref|NP_615620.1| - 2.4 8.1 5.6 7.9 6.4 0.1 3.3 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Cytochrome_cB PF11783.8 gi|20089545|ref|NP_615620.1| - 2.6 7.9 14.3 0.68 9.8 0.6 4.2 4 1 0 4 4 4 0 Cytochrome c bacterial CCP_MauG PF03150.14 gi|20089545|ref|NP_615620.1| - 2.7 8.6 12.6 33 5.1 0.0 4.6 4 1 2 6 6 6 0 Di-haem cytochrome c peroxidase Complex1_51K PF01512.17 gi|20089546|ref|NP_615621.1| - 2e-25 89.4 0.1 4.1e-25 88.4 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|20089546|ref|NP_615621.1| - 4.2e-18 65.2 0.1 1.3e-17 63.6 0.1 1.8 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|20089546|ref|NP_615621.1| - 2.7e-11 43.1 3.1 7.9e-11 41.7 3.1 1.9 1 0 0 1 1 1 1 SLBB domain Fer4_10 PF13237.6 gi|20089546|ref|NP_615621.1| - 1.1e-07 31.8 12.1 5.7e-06 26.3 13.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089546|ref|NP_615621.1| - 1.7e-07 31.0 13.4 0.0013 18.7 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20089546|ref|NP_615621.1| - 3.2e-07 29.9 14.5 0.0016 18.1 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089546|ref|NP_615621.1| - 1e-06 28.8 21.1 1.2e-05 25.4 12.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089546|ref|NP_615621.1| - 2.1e-06 28.6 7.1 0.011 16.6 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20089546|ref|NP_615621.1| - 2.7e-06 27.9 13.4 2e-05 25.1 13.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20089546|ref|NP_615621.1| - 9.1e-06 26.1 11.8 0.00024 21.6 12.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089546|ref|NP_615621.1| - 1.4e-05 24.9 13.0 0.018 15.1 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20089546|ref|NP_615621.1| - 1.9e-05 24.7 9.5 0.027 14.6 1.0 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089546|ref|NP_615621.1| - 2.6e-05 24.4 14.0 0.0063 16.9 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089546|ref|NP_615621.1| - 0.00011 22.5 12.2 0.0032 17.9 13.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089546|ref|NP_615621.1| - 0.00038 21.2 4.5 0.47 11.3 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089546|ref|NP_615621.1| - 0.0011 19.7 18.8 0.074 14.0 6.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20089546|ref|NP_615621.1| - 0.0063 16.7 12.4 1.1 9.5 12.3 2.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089546|ref|NP_615621.1| - 0.045 14.3 8.4 1.8 9.2 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|20089546|ref|NP_615621.1| - 2.4 8.0 10.2 15 5.4 10.1 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQR2_RnfD_RnfE PF03116.15 gi|20089547|ref|NP_615622.1| - 2.3e-72 243.9 22.5 2.6e-72 243.7 22.5 1.0 1 0 0 1 1 1 1 NQR2, RnfD, RnfE family Cytomega_gL PF01801.16 gi|20089547|ref|NP_615622.1| - 0.096 12.1 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein L FMN_bind PF04205.14 gi|20089548|ref|NP_615623.1| - 1.2e-18 67.4 0.3 3.7e-18 65.8 0.3 1.8 1 0 0 1 1 1 1 FMN-binding domain TCTP PF00838.17 gi|20089548|ref|NP_615623.1| - 0.0035 17.7 0.0 0.0085 16.4 0.0 1.6 2 0 0 2 2 2 1 Translationally controlled tumour protein DUF3659 PF12396.8 gi|20089548|ref|NP_615623.1| - 0.06 13.3 0.2 1.7 8.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Rnf-Nqr PF02508.14 gi|20089549|ref|NP_615624.1| - 6.3e-61 205.4 16.6 8.1e-61 205.0 16.6 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein YwiC PF14256.6 gi|20089549|ref|NP_615624.1| - 0.089 13.1 2.8 0.076 13.3 0.8 1.8 2 0 0 2 2 2 0 YwiC-like protein Rnf-Nqr PF02508.14 gi|20089550|ref|NP_615625.1| - 4.4e-55 186.3 21.4 4.9e-55 186.2 21.4 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Abhydrolase_9_N PF15420.6 gi|20089550|ref|NP_615625.1| - 0.009 16.0 0.8 0.009 16.0 0.8 2.7 2 1 0 2 2 2 1 Alpha/beta-hydrolase family N-terminus DUF1761 PF08570.10 gi|20089550|ref|NP_615625.1| - 1.6 9.0 14.1 87 3.4 14.1 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) Fer4 PF00037.27 gi|20089551|ref|NP_615626.1| - 8.2e-19 66.6 57.1 2.9e-08 33.2 5.2 6.9 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089551|ref|NP_615626.1| - 3e-17 63.0 53.6 2e-08 34.7 13.4 5.1 1 1 3 4 4 3 3 4Fe-4S dicluster domain FeS PF04060.13 gi|20089551|ref|NP_615626.1| - 2e-12 46.5 9.4 2e-12 46.5 9.4 4.1 3 1 1 4 4 3 1 Putative Fe-S cluster Fer4_9 PF13187.6 gi|20089551|ref|NP_615626.1| - 2.4e-12 46.8 44.7 3.1e-09 36.9 13.4 4.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089551|ref|NP_615626.1| - 2.5e-12 46.3 27.0 1.3e-06 28.2 3.6 6.2 6 2 0 6 6 5 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20089551|ref|NP_615626.1| - 5e-09 36.1 54.2 2.2e-05 24.5 16.2 4.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089551|ref|NP_615626.1| - 1.1e-08 35.0 27.3 5.6e-07 29.6 15.7 4.9 2 2 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089551|ref|NP_615626.1| - 1.9e-07 30.7 13.0 2.7e-05 24.0 2.1 6.1 6 1 0 6 6 5 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20089551|ref|NP_615626.1| - 2.4e-07 31.6 44.5 0.0022 18.9 1.8 5.8 5 1 1 6 6 6 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|20089551|ref|NP_615626.1| - 6.7e-05 23.1 13.7 0.00032 21.0 5.0 7.3 7 3 0 7 7 4 3 4Fe-4S binding domain Fer4_13 PF13370.6 gi|20089551|ref|NP_615626.1| - 0.00089 19.8 14.2 0.0061 17.1 4.4 5.4 6 1 1 7 7 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|20089551|ref|NP_615626.1| - 0.0054 17.1 24.9 0.021 15.2 16.1 4.4 3 2 0 3 3 2 2 4Fe-4S dicluster domain FIST PF08495.10 gi|20089551|ref|NP_615626.1| - 0.026 14.5 0.2 0.06 13.4 0.1 1.8 1 1 0 1 1 1 0 FIST N domain Fer4_15 PF13459.6 gi|20089551|ref|NP_615626.1| - 0.031 15.0 1.6 0.031 15.0 1.6 5.7 3 2 2 5 5 5 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|20089551|ref|NP_615626.1| - 0.12 13.0 1.3 0.051 14.1 17.3 5.2 2 1 3 5 5 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089551|ref|NP_615626.1| - 3.5 8.8 71.0 0.2 12.7 7.2 7.0 7 1 0 7 7 5 0 4Fe-4S binding domain TIC20 PF16166.5 gi|20089552|ref|NP_615627.1| - 0.0012 18.6 2.9 0.0015 18.3 2.9 1.2 1 0 0 1 1 1 1 Chloroplast import apparatus Tic20-like DUF4870 PF09685.10 gi|20089552|ref|NP_615627.1| - 0.023 14.8 5.7 0.031 14.4 5.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4870) DUF2284 PF10050.9 gi|20089553|ref|NP_615628.1| - 4.8e-42 143.5 0.4 5.7e-42 143.2 0.4 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF1978 PF09321.10 gi|20089553|ref|NP_615628.1| - 0.082 12.2 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) Fer4_9 PF13187.6 gi|20089554|ref|NP_615629.1| - 0.022 14.9 3.1 0.19 11.9 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089554|ref|NP_615629.1| - 0.053 14.5 4.0 2.1 9.3 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20089554|ref|NP_615629.1| - 0.2 12.3 3.8 2.1e+02 2.6 9.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089554|ref|NP_615629.1| - 4.7 7.4 9.1 0.63 10.2 0.7 2.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089554|ref|NP_615629.1| - 7.1 6.9 8.9 1.1 9.5 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Rep_fac_C PF08542.11 gi|20089555|ref|NP_615630.1| - 2.2e-24 85.7 0.1 5e-24 84.5 0.1 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|20089555|ref|NP_615630.1| - 6.4e-18 65.5 0.0 1.5e-17 64.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|20089555|ref|NP_615630.1| - 1.2e-15 57.7 0.0 1.3e-10 41.3 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|20089555|ref|NP_615630.1| - 3.6e-08 34.0 0.0 0.00015 22.2 0.0 2.5 2 1 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|20089555|ref|NP_615630.1| - 3.9e-07 30.0 0.0 6.3e-06 26.0 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|20089555|ref|NP_615630.1| - 1.5e-06 28.3 0.0 3e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_3 PF07726.11 gi|20089555|ref|NP_615630.1| - 1.9e-05 24.5 0.0 5.5e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|20089555|ref|NP_615630.1| - 0.00014 21.4 0.0 0.022 14.1 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|20089555|ref|NP_615630.1| - 0.00014 22.1 0.0 0.0003 21.1 0.0 1.6 1 0 0 1 1 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|20089555|ref|NP_615630.1| - 0.00036 20.6 0.0 0.0007 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20089555|ref|NP_615630.1| - 0.00087 19.6 0.1 2.1 8.6 0.0 2.9 2 1 1 3 3 3 2 AAA domain DNA_pol3_delta PF06144.13 gi|20089555|ref|NP_615630.1| - 0.00096 19.0 0.0 0.0052 16.6 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit TIP49 PF06068.13 gi|20089555|ref|NP_615630.1| - 0.001 18.4 0.0 0.009 15.3 0.0 2.2 2 1 0 3 3 3 1 TIP49 P-loop domain AAA_5 PF07728.14 gi|20089555|ref|NP_615630.1| - 0.019 15.0 0.0 0.12 12.4 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|20089555|ref|NP_615630.1| - 0.021 14.8 0.0 0.23 11.5 0.0 2.1 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|20089555|ref|NP_615630.1| - 0.033 13.8 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|20089555|ref|NP_615630.1| - 0.036 13.8 0.0 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|20089555|ref|NP_615630.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|20089555|ref|NP_615630.1| - 0.049 13.4 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|20089555|ref|NP_615630.1| - 0.08 13.5 0.0 0.21 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|20089555|ref|NP_615630.1| - 0.1 12.3 0.0 0.5 10.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain MqsR_toxin PF15723.5 gi|20089555|ref|NP_615630.1| - 0.12 12.8 0.0 18 5.8 0.0 3.1 1 1 2 3 3 3 0 Motility quorum-sensing regulator, toxin of MqsA Fer4 PF00037.27 gi|20089556|ref|NP_615631.1| - 1.1e-15 56.7 14.4 7.1e-09 35.1 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089556|ref|NP_615631.1| - 8.3e-13 48.7 18.0 5.4e-10 39.7 8.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089556|ref|NP_615631.1| - 8.4e-13 48.2 6.3 8e-06 25.9 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089556|ref|NP_615631.1| - 1.3e-12 47.6 9.6 4e-07 30.1 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089556|ref|NP_615631.1| - 2.9e-11 42.9 14.4 8.2e-07 28.8 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20089556|ref|NP_615631.1| - 7.9e-11 41.4 11.4 4.1e-06 26.6 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089556|ref|NP_615631.1| - 2.7e-10 40.2 18.8 2.9e-07 30.5 9.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089556|ref|NP_615631.1| - 1e-08 36.0 8.0 8e-05 23.5 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|20089556|ref|NP_615631.1| - 2.1e-08 34.0 13.1 4.2e-05 23.7 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089556|ref|NP_615631.1| - 2.6e-08 34.2 8.8 1.9e-06 28.2 10.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089556|ref|NP_615631.1| - 6e-06 27.0 5.2 0.012 16.4 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089556|ref|NP_615631.1| - 9.9e-06 26.2 16.4 0.011 16.6 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089556|ref|NP_615631.1| - 3.5e-05 24.2 10.4 0.0011 19.5 10.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089556|ref|NP_615631.1| - 0.00012 22.5 13.9 0.0088 16.6 2.6 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|20089556|ref|NP_615631.1| - 0.0021 18.2 11.8 0.019 15.2 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20089556|ref|NP_615631.1| - 0.0029 18.3 5.6 0.063 14.0 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Keratin_matx PF04579.12 gi|20089556|ref|NP_615631.1| - 0.018 15.4 8.9 0.56 10.6 0.8 2.1 1 1 1 2 2 2 0 Keratin, high-sulphur matrix protein YABBY PF04690.13 gi|20089556|ref|NP_615631.1| - 0.38 11.3 3.6 1.7 9.2 0.6 2.1 1 1 1 2 2 2 0 YABBY protein DUF678 PF05077.12 gi|20089556|ref|NP_615631.1| - 1.5 9.0 9.2 4.6 7.4 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zf-C2H2_11 PF16622.5 gi|20089556|ref|NP_615631.1| - 6.9 6.5 11.9 0.74 9.6 2.7 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type CBFD_NFYB_HMF PF00808.23 gi|20089557|ref|NP_615632.1| - 7.4e-16 58.2 0.2 8.7e-16 58.0 0.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|20089557|ref|NP_615632.1| - 9.1e-10 39.0 0.1 1.2e-09 38.6 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|20089557|ref|NP_615632.1| - 5.7e-07 29.6 0.0 6e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|20089557|ref|NP_615632.1| - 6.9e-06 26.0 0.0 8.1e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|20089557|ref|NP_615632.1| - 1.3e-05 25.2 0.0 1.6e-05 24.9 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.6 gi|20089557|ref|NP_615632.1| - 3.3e-05 24.2 0.0 3.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TAF PF02969.17 gi|20089557|ref|NP_615632.1| - 0.0083 16.3 0.1 0.0092 16.1 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.16 gi|20089557|ref|NP_615632.1| - 0.028 14.5 0.0 0.031 14.3 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Peptidase_C39 PF03412.15 gi|20089557|ref|NP_615632.1| - 0.061 13.1 0.1 0.066 13.0 0.1 1.1 1 0 0 1 1 1 0 Peptidase C39 family TFIID_20kDa PF03847.13 gi|20089557|ref|NP_615632.1| - 0.07 13.6 0.0 0.078 13.5 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A PCP_red PF08369.10 gi|20089557|ref|NP_615632.1| - 0.2 11.9 1.9 0.86 9.9 0.5 2.1 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Methyltransf_25 PF13649.6 gi|20089558|ref|NP_615633.1| - 2.2e-05 25.1 0.0 6.5e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089558|ref|NP_615633.1| - 0.00089 19.9 0.0 0.0036 17.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|20089558|ref|NP_615633.1| - 0.019 13.9 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_23 PF13489.6 gi|20089558|ref|NP_615633.1| - 0.046 13.5 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PYC_OADA PF02436.18 gi|20089559|ref|NP_615634.1| - 4e-59 199.7 0.1 7.2e-59 198.9 0.1 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|20089559|ref|NP_615634.1| - 5.3e-48 163.9 0.0 8.4e-48 163.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|20089559|ref|NP_615634.1| - 1.4e-15 56.9 3.7 1.4e-15 56.9 3.7 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|20089559|ref|NP_615634.1| - 6e-09 35.6 0.3 0.00029 20.6 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|20089559|ref|NP_615634.1| - 0.0011 18.8 1.2 0.0058 16.6 0.6 2.4 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|20089559|ref|NP_615634.1| - 0.0016 19.1 0.1 2.2 9.0 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|20089559|ref|NP_615634.1| - 0.0028 16.9 0.3 0.24 10.6 0.0 2.4 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Amidohydro_1 PF01979.20 gi|20089559|ref|NP_615634.1| - 0.0032 16.9 1.2 0.094 12.0 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase family GCV_H PF01597.19 gi|20089559|ref|NP_615634.1| - 0.038 13.9 0.5 0.12 12.2 0.5 1.8 1 0 0 1 1 1 0 Glycine cleavage H-protein NQRA PF05896.11 gi|20089559|ref|NP_615634.1| - 0.15 11.5 0.7 0.47 9.9 0.4 1.9 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF561 PF04481.12 gi|20089559|ref|NP_615634.1| - 0.2 10.8 1.1 6.9 5.8 0.6 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF561) CPSase_L_D2 PF02786.17 gi|20089560|ref|NP_615635.1| - 1.4e-80 269.8 0.2 2.3e-80 269.1 0.2 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|20089560|ref|NP_615635.1| - 1.7e-48 163.7 0.1 2.2e-47 160.2 0.1 2.7 3 0 0 3 3 3 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|20089560|ref|NP_615635.1| - 4.6e-44 148.9 0.0 8.9e-44 148.0 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|20089560|ref|NP_615635.1| - 4e-14 52.6 0.1 1.1e-13 51.2 0.1 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|20089560|ref|NP_615635.1| - 1.1e-07 31.6 0.1 2.1e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|20089560|ref|NP_615635.1| - 2.2e-07 30.7 0.2 1.7e-06 27.7 0.2 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|20089560|ref|NP_615635.1| - 8.9e-07 29.1 0.1 1.5e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|20089560|ref|NP_615635.1| - 0.0022 17.5 0.0 0.0051 16.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|20089560|ref|NP_615635.1| - 0.0038 17.0 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Oxidored_nitro PF00148.19 gi|20089560|ref|NP_615635.1| - 0.0061 15.3 0.1 0.04 12.7 0.0 1.9 1 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase ATP-grasp_4 PF13535.6 gi|20089560|ref|NP_615635.1| - 0.055 13.1 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 ATP-grasp domain baeRF_family3 PF18845.1 gi|20089560|ref|NP_615635.1| - 0.15 12.3 0.2 1 9.6 0.1 2.1 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 3 OAD_gamma PF04277.13 gi|20089560|ref|NP_615635.1| - 0.3 11.7 4.0 0.64 10.6 4.0 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain BPL_LplA_LipB PF03099.19 gi|20089561|ref|NP_615636.1| - 4e-18 65.6 0.0 8e-18 64.6 0.0 1.5 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|20089561|ref|NP_615636.1| - 1.4e-16 60.2 0.1 3.3e-16 59.0 0.1 1.7 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|20089561|ref|NP_615636.1| - 1.4e-09 37.7 0.4 3.9e-09 36.3 0.1 1.9 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|20089561|ref|NP_615636.1| - 1.2e-05 24.9 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 gi|20089561|ref|NP_615636.1| - 0.0008 18.9 0.0 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding S-layer PF07752.11 gi|20089562|ref|NP_615637.1| - 9.4e-12 44.5 0.0 1.2e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 S-layer protein Laminin_I PF06008.14 gi|20089563|ref|NP_615638.1| - 0.00031 20.6 32.7 0.038 13.7 8.5 2.1 2 0 0 2 2 2 2 Laminin Domain I GAS PF13851.6 gi|20089563|ref|NP_615638.1| - 0.00045 19.6 15.3 0.00045 19.6 15.3 3.2 1 1 2 3 3 3 1 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|20089563|ref|NP_615638.1| - 0.0013 18.8 15.2 0.0013 18.8 15.2 3.3 1 1 2 3 3 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|20089563|ref|NP_615638.1| - 0.0037 16.6 3.8 0.0037 16.6 3.8 3.6 1 1 2 3 3 3 1 Protein of unknown function (DUF3450) KASH_CCD PF14662.6 gi|20089563|ref|NP_615638.1| - 0.004 17.0 36.2 0.005 16.7 13.6 2.7 2 1 0 2 2 2 2 Coiled-coil region of CCDC155 or KASH Seryl_tRNA_N PF02403.22 gi|20089563|ref|NP_615638.1| - 0.016 15.4 37.0 0.017 15.4 8.5 4.5 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|20089563|ref|NP_615638.1| - 0.019 15.0 23.7 2 8.5 0.4 4.2 2 2 1 4 4 4 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|20089563|ref|NP_615638.1| - 0.021 14.7 1.6 0.021 14.7 1.6 3.9 2 2 2 4 4 4 0 Sec34-like family DUF948 PF06103.11 gi|20089563|ref|NP_615638.1| - 0.031 14.5 10.4 20 5.5 0.6 4.8 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) FAM76 PF16046.5 gi|20089563|ref|NP_615638.1| - 0.051 12.9 29.7 0.081 12.3 13.8 2.3 2 0 0 2 2 2 0 FAM76 protein DUF1854 PF08909.11 gi|20089563|ref|NP_615638.1| - 0.11 12.3 2.9 0.12 12.2 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1854) IFT57 PF10498.9 gi|20089563|ref|NP_615638.1| - 0.15 11.0 29.8 0.13 11.2 10.9 2.6 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 ERM PF00769.19 gi|20089563|ref|NP_615638.1| - 0.19 11.5 37.8 0.021 14.6 13.1 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family MscS_porin PF12795.7 gi|20089563|ref|NP_615638.1| - 0.2 11.1 36.4 0.014 14.9 21.3 3.7 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain Fez1 PF06818.15 gi|20089563|ref|NP_615638.1| - 0.34 11.4 38.7 0.3 11.5 14.0 2.5 1 1 1 2 2 2 0 Fez1 Spore_YhaL PF14147.6 gi|20089563|ref|NP_615638.1| - 0.42 10.3 1.8 1.8 8.3 1.0 2.5 3 0 0 3 3 2 0 Sporulation protein YhaL IL5 PF02025.15 gi|20089563|ref|NP_615638.1| - 0.48 10.7 7.5 0.32 11.3 0.5 3.0 2 1 0 3 3 3 0 Interleukin 5 V_ATPase_I PF01496.19 gi|20089563|ref|NP_615638.1| - 0.49 8.2 20.5 0.6 7.9 20.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family NPV_P10 PF05531.12 gi|20089563|ref|NP_615638.1| - 0.51 10.8 15.5 0.4 11.2 3.0 4.4 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.8 gi|20089563|ref|NP_615638.1| - 0.62 7.5 38.6 1 6.8 38.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Laminin_II PF06009.12 gi|20089563|ref|NP_615638.1| - 0.68 10.0 27.5 0.07 13.1 4.1 4.1 2 2 2 4 4 4 0 Laminin Domain II FUSC PF04632.12 gi|20089563|ref|NP_615638.1| - 0.81 8.1 6.7 1.4 7.4 0.6 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family HsbA PF12296.8 gi|20089563|ref|NP_615638.1| - 0.93 9.9 6.3 1.7 9.1 0.1 3.7 3 2 1 4 4 4 0 Hydrophobic surface binding protein A MAD PF05557.13 gi|20089563|ref|NP_615638.1| - 1.1 7.6 42.3 0.12 10.7 17.2 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein Spc7 PF08317.11 gi|20089563|ref|NP_615638.1| - 1.1 8.0 43.5 0.021 13.7 17.1 3.1 1 1 0 2 2 2 0 Spc7 kinetochore protein CDPS PF16715.5 gi|20089563|ref|NP_615638.1| - 1.7 8.3 7.6 0.35 10.5 2.0 2.2 2 0 0 2 2 2 0 Cyclodipeptide synthase Atg14 PF10186.9 gi|20089563|ref|NP_615638.1| - 2.7 7.0 43.6 12 4.9 13.9 3.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlaC_arch PF05377.11 gi|20089563|ref|NP_615638.1| - 3.1 8.3 19.1 7.6 7.0 3.1 5.4 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) SseC PF04888.12 gi|20089563|ref|NP_615638.1| - 3.9 7.0 20.1 1.1 8.7 1.8 3.7 3 1 1 4 4 4 0 Secretion system effector C (SseC) like family DUF1798 PF08807.10 gi|20089563|ref|NP_615638.1| - 6.1 7.0 10.7 0.39 10.9 3.0 2.6 2 1 1 3 3 3 0 Bacterial domain of unknown function (DUF1798) DUF5601 PF18151.1 gi|20089564|ref|NP_615639.1| - 0.024 14.9 2.3 0.13 12.6 0.7 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5601) Ubiq_cyt_C_chap PF03981.12 gi|20089564|ref|NP_615639.1| - 0.027 14.6 1.1 0.044 13.9 0.5 1.6 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone Spc7 PF08317.11 gi|20089564|ref|NP_615639.1| - 0.34 9.7 28.5 3.9 6.3 10.5 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein PSI_PsaF PF02507.15 gi|20089564|ref|NP_615639.1| - 0.73 9.7 3.3 13 5.6 0.7 2.3 1 1 1 2 2 2 0 Photosystem I reaction centre subunit III NEMP PF10225.9 gi|20089564|ref|NP_615639.1| - 4.7 6.8 4.8 0.45 10.2 0.3 1.6 2 0 0 2 2 2 0 NEMP family FAM167 PF11652.8 gi|20089564|ref|NP_615639.1| - 7.6 7.1 11.9 46 4.6 5.0 3.6 2 2 1 3 3 3 0 FAM167 DUF424 PF04242.13 gi|20089565|ref|NP_615640.1| - 4.1e-32 110.3 0.2 4.5e-32 110.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.23 gi|20089566|ref|NP_615641.1| - 2e-95 318.2 0.0 2.8e-95 317.7 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|20089566|ref|NP_615641.1| - 8.5e-36 122.6 0.0 1.4e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|20089566|ref|NP_615641.1| - 4e-28 97.7 1.0 8.4e-28 96.6 0.3 2.0 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|20089566|ref|NP_615641.1| - 2.9e-08 34.2 0.1 1.1e-07 32.3 0.1 2.0 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|20089566|ref|NP_615641.1| - 3.1e-06 26.7 0.1 0.00028 20.4 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|20089566|ref|NP_615641.1| - 1.2e-05 25.3 0.0 3.1e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|20089566|ref|NP_615641.1| - 0.0031 17.4 0.0 0.012 15.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|20089566|ref|NP_615641.1| - 0.065 13.7 0.0 0.24 11.8 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Imm74 PF15603.6 gi|20089566|ref|NP_615641.1| - 0.13 12.4 0.1 0.48 10.7 0.1 1.9 1 0 0 1 1 1 0 Immunity protein 74 SpoU_methylase PF00588.19 gi|20089567|ref|NP_615642.1| - 7e-31 107.3 0.0 1.1e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family AdoHcyase_NAD PF00670.21 gi|20089567|ref|NP_615642.1| - 0.17 11.9 0.0 0.38 10.8 0.0 1.6 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain OTCace PF00185.24 gi|20089567|ref|NP_615642.1| - 0.19 11.8 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fer4 PF00037.27 gi|20089568|ref|NP_615643.1| - 4.6e-14 51.6 13.1 1.5e-07 30.9 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20089568|ref|NP_615643.1| - 5.1e-12 45.3 14.9 6.8e-07 29.1 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089568|ref|NP_615643.1| - 6.3e-12 45.9 26.3 4.3e-08 33.6 15.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089568|ref|NP_615643.1| - 2.1e-09 37.3 27.4 9.8e-09 35.2 15.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089568|ref|NP_615643.1| - 2.2e-09 37.3 10.8 2.7e-09 37.0 10.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089568|ref|NP_615643.1| - 7.2e-09 35.2 15.1 2.9e-06 27.0 1.4 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089568|ref|NP_615643.1| - 1.4e-08 34.8 27.7 2.4e-06 27.6 15.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089568|ref|NP_615643.1| - 1.3e-06 28.4 17.3 8.3e-05 22.8 3.6 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20089568|ref|NP_615643.1| - 9.6e-05 23.0 10.8 0.00034 21.3 1.3 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|20089568|ref|NP_615643.1| - 0.00034 21.1 12.4 0.00041 20.8 2.7 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|20089568|ref|NP_615643.1| - 0.00046 20.6 16.7 0.003 17.9 16.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089568|ref|NP_615643.1| - 0.00058 20.7 16.4 0.06 14.3 2.0 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|20089568|ref|NP_615643.1| - 0.0017 18.9 17.2 0.028 15.0 5.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089568|ref|NP_615643.1| - 0.0029 18.4 22.2 0.042 14.8 5.9 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20089568|ref|NP_615643.1| - 0.0033 18.2 14.0 0.0046 17.8 1.7 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089568|ref|NP_615643.1| - 1.5 9.1 12.3 4.7 7.4 3.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Rubrerythrin PF02915.17 gi|20089569|ref|NP_615644.1| - 6.4e-14 52.5 2.3 2.3e-12 47.5 2.3 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|20089569|ref|NP_615644.1| - 3.1e-06 27.2 2.6 0.0001 22.3 2.6 2.0 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|20089569|ref|NP_615644.1| - 0.0094 14.8 0.4 0.8 8.5 0.1 2.0 1 1 1 2 2 2 2 Fatty acid desaturase Phenol_Hydrox PF02332.18 gi|20089569|ref|NP_615644.1| - 0.046 13.2 0.1 6.8 6.2 0.0 2.1 2 0 0 2 2 2 0 Methane/Phenol/Toluene Hydroxylase NIR_SIR PF01077.22 gi|20089570|ref|NP_615645.1| - 7.9e-31 106.7 0.0 1.2e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|20089570|ref|NP_615645.1| - 3.7e-16 58.7 0.0 6.3e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain PMBR PF09373.10 gi|20089570|ref|NP_615645.1| - 0.062 13.5 0.1 0.2 11.9 0.0 1.9 2 0 0 2 2 2 0 Pseudomurein-binding repeat RIG-I_C PF18119.1 gi|20089571|ref|NP_615646.1| - 0.0057 16.7 0.1 0.0067 16.5 0.1 1.1 1 0 0 1 1 1 1 RIG-I receptor C-terminal domain Nitrate_red_gam PF02665.14 gi|20089572|ref|NP_615647.1| - 2.7e-05 23.8 12.5 9.8e-05 22.0 1.4 2.9 3 0 0 3 3 3 2 Nitrate reductase gamma subunit CCG PF02754.16 gi|20089573|ref|NP_615648.1| - 5.6e-32 109.8 1.4 2e-16 59.9 0.0 2.8 4 0 0 4 4 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|20089573|ref|NP_615648.1| - 2.2e-10 40.8 3.1 2.2e-10 40.8 3.1 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20089573|ref|NP_615648.1| - 3e-07 30.9 3.5 3e-07 30.9 3.5 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089573|ref|NP_615648.1| - 7.7e-07 29.2 17.6 2.1e-06 27.8 7.1 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20089573|ref|NP_615648.1| - 1.6e-06 28.6 6.2 1.6e-06 28.6 6.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089573|ref|NP_615648.1| - 9.5e-06 25.6 16.2 4.9e-05 23.4 11.1 3.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089573|ref|NP_615648.1| - 2.1e-05 25.4 6.8 2.1e-05 25.4 6.8 2.6 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|20089573|ref|NP_615648.1| - 0.00012 22.2 3.0 0.22 11.7 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089573|ref|NP_615648.1| - 0.002 18.2 8.9 0.21 11.8 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089573|ref|NP_615648.1| - 0.0033 17.4 1.7 0.0033 17.4 1.7 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20089573|ref|NP_615648.1| - 0.0063 16.6 1.8 0.0063 16.6 1.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20089573|ref|NP_615648.1| - 0.0072 16.1 1.7 0.0072 16.1 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20089573|ref|NP_615648.1| - 0.029 15.3 3.7 0.029 15.3 3.7 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089573|ref|NP_615648.1| - 0.053 14.0 2.4 0.053 14.0 2.4 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20089573|ref|NP_615648.1| - 0.19 12.5 7.9 2.1 9.1 0.0 3.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|20089573|ref|NP_615648.1| - 2 9.3 16.4 0.81 10.6 0.4 3.6 4 0 0 4 4 3 0 4Fe-4S dicluster domain DUF116 PF01976.17 gi|20089574|ref|NP_615649.1| - 6.8e-45 152.4 3.4 8e-45 152.1 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF3683 PF12447.8 gi|20089574|ref|NP_615649.1| - 0.26 11.4 0.4 0.84 9.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3683) DUF116 PF01976.17 gi|20089575|ref|NP_615650.1| - 7.2e-43 145.8 0.4 8.8e-43 145.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF4123 PF13503.6 gi|20089575|ref|NP_615650.1| - 0.19 12.1 0.4 0.3 11.5 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4123) FAD_binding_3 PF01494.19 gi|20089576|ref|NP_615651.1| - 2.3e-10 40.3 0.4 5.2e-08 32.5 0.2 2.7 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|20089576|ref|NP_615651.1| - 2e-09 37.3 0.0 2.8e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|20089576|ref|NP_615651.1| - 2.2e-08 33.7 0.2 0.0046 16.3 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|20089576|ref|NP_615651.1| - 4.2e-07 29.0 0.1 0.0016 17.2 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|20089576|ref|NP_615651.1| - 1.2e-06 28.4 1.0 0.02 14.5 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|20089576|ref|NP_615651.1| - 1.7e-06 27.5 0.3 7.6e-06 25.4 0.3 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|20089576|ref|NP_615651.1| - 3.2e-05 23.1 0.0 0.00013 21.2 0.0 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|20089576|ref|NP_615651.1| - 0.0001 21.3 0.1 0.2 10.5 0.0 2.6 2 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|20089576|ref|NP_615651.1| - 0.00063 18.9 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|20089576|ref|NP_615651.1| - 0.0012 19.0 0.0 0.024 14.8 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|20089576|ref|NP_615651.1| - 0.0017 17.7 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|20089576|ref|NP_615651.1| - 0.0044 16.1 0.1 0.0093 15.1 0.0 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|20089577|ref|NP_615652.1| - 7.4e-10 38.6 0.0 8.8e-09 35.0 0.0 2.4 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|20089577|ref|NP_615652.1| - 1.5e-07 31.0 0.2 0.016 14.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|20089577|ref|NP_615652.1| - 3.4e-07 29.5 0.0 0.00029 19.8 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|20089577|ref|NP_615652.1| - 4.4e-06 26.3 0.0 6.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|20089577|ref|NP_615652.1| - 1.3e-05 24.1 0.1 0.015 14.0 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_2 PF07992.14 gi|20089577|ref|NP_615652.1| - 3.2e-05 23.3 0.0 0.00011 21.6 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|20089577|ref|NP_615652.1| - 0.00034 20.3 0.4 0.53 9.8 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|20089577|ref|NP_615652.1| - 0.0017 18.5 0.3 0.047 13.9 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|20089577|ref|NP_615652.1| - 0.011 14.8 0.0 0.74 8.8 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|20089577|ref|NP_615652.1| - 0.017 14.3 0.0 0.035 13.4 0.0 1.5 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|20089577|ref|NP_615652.1| - 0.018 14.1 0.0 0.024 13.7 0.0 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|20089577|ref|NP_615652.1| - 0.025 13.7 0.1 0.057 12.5 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.27 gi|20089577|ref|NP_615652.1| - 0.04 14.5 0.2 1.5 9.4 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PCNA_N PF00705.18 gi|20089577|ref|NP_615652.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Proliferating cell nuclear antigen, N-terminal domain Dus PF01207.17 gi|20089578|ref|NP_615653.1| - 3.3e-15 56.0 0.1 6.9e-15 54.9 0.1 1.5 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|20089578|ref|NP_615653.1| - 2.4e-06 27.2 0.1 9.1e-06 25.3 0.1 1.8 1 1 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|20089578|ref|NP_615653.1| - 0.024 13.7 0.8 0.032 13.3 0.8 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Lsr2 PF11774.8 gi|20089578|ref|NP_615653.1| - 0.19 11.9 0.0 0.51 10.5 0.0 1.7 2 0 0 2 2 2 0 Lsr2 CitG PF01874.16 gi|20089579|ref|NP_615654.1| - 3.8e-77 259.7 0.1 4.4e-77 259.5 0.1 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|20089580|ref|NP_615655.1| - 1.8e-54 184.2 0.0 2.1e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Hepar_II_III_N PF16889.5 gi|20089580|ref|NP_615655.1| - 0.1 11.9 0.1 1.5 8.0 0.0 2.0 2 0 0 2 2 2 0 Heparinase II/III N-terminus Flavoprotein PF02441.19 gi|20089581|ref|NP_615656.1| - 9.8e-17 61.1 0.0 1.5e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|20089581|ref|NP_615656.1| - 1.7e-07 30.7 12.3 1.7e-06 27.6 2.2 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089581|ref|NP_615656.1| - 3.2e-07 30.8 4.4 0.00032 21.2 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20089581|ref|NP_615656.1| - 2.9e-06 28.1 7.9 0.00078 20.3 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 gi|20089581|ref|NP_615656.1| - 6.4e-05 23.0 2.0 9.7e-05 22.4 2.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089581|ref|NP_615656.1| - 8.3e-05 22.7 10.6 0.00043 20.4 11.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089581|ref|NP_615656.1| - 0.00041 20.4 9.0 0.00067 19.7 9.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089581|ref|NP_615656.1| - 0.00057 19.8 11.2 0.013 15.5 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20089581|ref|NP_615656.1| - 0.0014 18.7 12.7 0.012 15.7 1.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089581|ref|NP_615656.1| - 0.0022 18.0 14.1 0.016 15.3 2.6 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089581|ref|NP_615656.1| - 0.0031 18.0 9.6 0.018 15.6 0.3 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089581|ref|NP_615656.1| - 3.3 8.2 12.9 0.32 11.5 1.3 2.3 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20089581|ref|NP_615656.1| - 4.8 8.0 9.3 4.1 8.2 0.2 3.3 3 1 1 4 4 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|20089581|ref|NP_615656.1| - 9.2 6.9 11.9 2.2 8.9 0.6 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I ABC_tran PF00005.27 gi|20089582|ref|NP_615657.1| - 3.9e-28 98.7 0.0 5.4e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089582|ref|NP_615657.1| - 4.1e-05 23.5 0.9 0.00017 21.5 0.2 1.9 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089582|ref|NP_615657.1| - 0.0014 18.1 0.1 0.0083 15.6 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|20089582|ref|NP_615657.1| - 0.032 13.6 0.2 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|20089582|ref|NP_615657.1| - 0.045 13.5 0.2 0.091 12.5 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain GTF2I PF02946.14 gi|20089582|ref|NP_615657.1| - 0.056 13.5 0.1 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 GTF2I-like repeat RsgA_GTPase PF03193.16 gi|20089582|ref|NP_615657.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|20089583|ref|NP_615658.1| - 1.9e-23 83.5 0.0 2.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20089583|ref|NP_615658.1| - 7.9e-15 55.1 0.2 1.8e-14 54.0 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.6 gi|20089583|ref|NP_615658.1| - 0.00059 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|20089583|ref|NP_615658.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region SMC_N PF02463.19 gi|20089583|ref|NP_615658.1| - 0.0017 17.8 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|20089583|ref|NP_615658.1| - 0.0043 16.8 0.1 0.012 15.4 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|20089583|ref|NP_615658.1| - 0.0057 16.9 0.1 0.019 15.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|20089583|ref|NP_615658.1| - 0.0058 16.0 0.0 0.0099 15.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|20089583|ref|NP_615658.1| - 0.011 16.1 0.1 0.025 15.0 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|20089583|ref|NP_615658.1| - 0.011 15.4 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|20089583|ref|NP_615658.1| - 0.018 15.4 0.1 0.022 15.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain Sigma54_activat PF00158.26 gi|20089583|ref|NP_615658.1| - 0.03 14.0 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|20089583|ref|NP_615658.1| - 0.063 13.2 0.1 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|20089583|ref|NP_615658.1| - 0.086 12.1 0.1 4.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 gi|20089583|ref|NP_615658.1| - 0.17 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase BPD_transp_1 PF00528.22 gi|20089584|ref|NP_615659.1| - 1.2e-16 61.0 10.1 1.2e-16 61.0 10.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20089584|ref|NP_615659.1| - 0.054 13.5 0.1 0.054 13.5 0.1 2.9 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|20089584|ref|NP_615659.1| - 0.29 10.6 2.9 0.31 10.5 1.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) BPD_transp_1 PF00528.22 gi|20089585|ref|NP_615660.1| - 3.3e-35 121.5 11.1 4.9e-35 120.9 11.1 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Lys_export PF03956.13 gi|20089585|ref|NP_615660.1| - 0.0087 15.6 0.3 0.0087 15.6 0.3 1.8 3 0 0 3 3 3 1 Lysine exporter LysO Gly-zipper_YMGG PF13441.6 gi|20089585|ref|NP_615660.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper LapA_dom PF06305.11 gi|20089585|ref|NP_615660.1| - 0.97 9.3 8.3 0.23 11.3 0.6 3.1 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain SBP_bac_5 PF00496.22 gi|20089586|ref|NP_615661.1| - 4.1e-66 223.5 0.6 5.3e-66 223.1 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TRAP_alpha PF03896.16 gi|20089587|ref|NP_615662.1| - 0.015 14.5 0.9 0.016 14.4 0.9 1.0 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Serinc PF03348.15 gi|20089587|ref|NP_615662.1| - 0.069 12.1 2.4 0.069 12.1 2.4 1.0 1 0 0 1 1 1 0 Serine incorporator (Serinc) FAM176 PF14851.6 gi|20089587|ref|NP_615662.1| - 0.092 12.4 3.5 0.12 12.0 3.5 1.2 1 0 0 1 1 1 0 FAM176 family RNA_pol_Rpc4 PF05132.14 gi|20089587|ref|NP_615662.1| - 0.18 12.2 7.2 0.21 12.0 7.2 1.1 1 0 0 1 1 1 0 RNA polymerase III RPC4 V_ATPase_I PF01496.19 gi|20089587|ref|NP_615662.1| - 0.18 9.7 5.1 0.21 9.5 5.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Connexin PF00029.19 gi|20089587|ref|NP_615662.1| - 0.25 11.1 4.8 0.26 11.0 4.8 1.1 1 0 0 1 1 1 0 Connexin DUF789 PF05623.12 gi|20089587|ref|NP_615662.1| - 0.31 10.7 5.8 0.34 10.6 5.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF789) NPR3 PF03666.13 gi|20089587|ref|NP_615662.1| - 0.39 9.5 10.0 0.43 9.3 10.0 1.0 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 CLN3 PF02487.17 gi|20089587|ref|NP_615662.1| - 0.9 8.5 3.7 0.91 8.5 3.7 1.0 1 0 0 1 1 1 0 CLN3 protein CobT PF06213.12 gi|20089587|ref|NP_615662.1| - 0.93 8.8 9.6 1 8.7 9.6 1.0 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT Neur_chan_memb PF02932.16 gi|20089587|ref|NP_615662.1| - 0.96 9.5 4.3 1 9.4 4.3 1.0 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Ureide_permease PF07168.11 gi|20089587|ref|NP_615662.1| - 1 8.0 3.4 1.1 7.9 3.4 1.0 1 0 0 1 1 1 0 Ureide permease AIF_C PF14721.6 gi|20089587|ref|NP_615662.1| - 1.3 9.4 6.9 1.4 9.2 6.9 1.1 1 0 0 1 1 1 0 Apoptosis-inducing factor, mitochondrion-associated, C-term Vfa1 PF08432.10 gi|20089587|ref|NP_615662.1| - 1.3 9.3 15.6 1.5 9.1 15.6 1.0 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Zip PF02535.22 gi|20089587|ref|NP_615662.1| - 2.2 7.4 6.5 2.2 7.4 6.5 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter NARP1 PF12569.8 gi|20089587|ref|NP_615662.1| - 3.7 6.4 12.0 4.1 6.2 12.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 EOS1 PF12326.8 gi|20089587|ref|NP_615662.1| - 5 7.0 5.8 5.3 6.9 5.8 1.0 1 0 0 1 1 1 0 N-glycosylation protein CDC45 PF02724.14 gi|20089587|ref|NP_615662.1| - 5 5.3 14.6 5.9 5.1 14.6 1.0 1 0 0 1 1 1 0 CDC45-like protein Sec62 PF03839.16 gi|20089587|ref|NP_615662.1| - 5.6 6.4 10.6 6.5 6.2 10.6 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 PHP PF02811.19 gi|20089588|ref|NP_615663.1| - 1.8e-05 25.1 0.1 4.7e-05 23.8 0.1 1.9 1 1 0 1 1 1 1 PHP domain EFhand_Ca_insen PF08726.10 gi|20089588|ref|NP_615663.1| - 0.019 15.1 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 Ca2+ insensitive EF hand Mrr_cat_2 PF13156.6 gi|20089589|ref|NP_615664.1| - 0.0042 17.0 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat PF04471.12 gi|20089589|ref|NP_615664.1| - 0.038 14.0 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease Aldedh PF00171.22 gi|20089590|ref|NP_615665.1| - 5.4e-132 440.6 0.0 6.5e-132 440.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|20089590|ref|NP_615665.1| - 0.015 14.4 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) Prefoldin_2 PF01920.20 gi|20089591|ref|NP_615666.1| - 0.0002 21.3 12.5 0.073 13.0 4.0 2.6 2 1 0 2 2 2 2 Prefoldin subunit DUF4795 PF16043.5 gi|20089591|ref|NP_615666.1| - 0.00032 20.3 9.6 0.0009 18.9 9.6 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) FlaC_arch PF05377.11 gi|20089591|ref|NP_615666.1| - 0.00044 20.6 10.1 0.11 12.9 0.4 3.1 1 1 1 2 2 2 2 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|20089591|ref|NP_615666.1| - 0.0013 18.8 5.8 0.32 11.0 0.9 2.8 1 1 2 3 3 3 2 Laminin Domain II Occludin_ELL PF07303.13 gi|20089591|ref|NP_615666.1| - 0.0069 17.1 4.8 0.25 12.1 1.4 2.1 1 1 1 2 2 2 2 Occludin homology domain Baculo_PEP_C PF04513.12 gi|20089591|ref|NP_615666.1| - 0.019 15.0 1.0 0.19 11.7 1.0 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZapB PF06005.12 gi|20089591|ref|NP_615666.1| - 0.02 15.3 8.3 0.99 9.9 5.5 2.8 1 1 1 2 2 2 0 Cell division protein ZapB DUF1798 PF08807.10 gi|20089591|ref|NP_615666.1| - 0.021 15.0 0.5 0.026 14.7 0.5 1.3 1 0 0 1 1 1 0 Bacterial domain of unknown function (DUF1798) CAMP_factor PF07373.11 gi|20089591|ref|NP_615666.1| - 0.022 14.4 0.9 0.029 14.0 0.9 1.3 1 1 0 1 1 1 0 CAMP factor (Cfa) TolA_bind_tri PF16331.5 gi|20089591|ref|NP_615666.1| - 0.031 14.3 3.0 1.3 9.2 1.8 2.3 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF3829 PF12889.7 gi|20089591|ref|NP_615666.1| - 0.032 13.7 0.2 0.032 13.7 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) Rx_N PF18052.1 gi|20089591|ref|NP_615666.1| - 0.046 14.0 5.0 0.62 10.4 0.1 2.5 1 1 1 2 2 2 0 Rx N-terminal domain AAA_13 PF13166.6 gi|20089591|ref|NP_615666.1| - 0.048 12.3 7.6 0.061 12.0 7.6 1.2 1 0 0 1 1 1 0 AAA domain DUF948 PF06103.11 gi|20089591|ref|NP_615666.1| - 0.05 13.9 1.5 0.45 10.8 0.3 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Bacillus_HBL PF05791.11 gi|20089591|ref|NP_615666.1| - 0.052 13.4 4.1 0.4 10.5 3.5 2.0 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) CLZ PF16526.5 gi|20089591|ref|NP_615666.1| - 0.055 13.8 1.2 0.055 13.8 1.2 2.4 1 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF2730 PF10805.8 gi|20089591|ref|NP_615666.1| - 0.057 13.5 5.6 0.61 10.2 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Spc7 PF08317.11 gi|20089591|ref|NP_615666.1| - 0.068 12.0 10.7 0.15 10.9 10.7 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF1843 PF08898.10 gi|20089591|ref|NP_615666.1| - 0.079 13.5 2.3 0.98 10.0 0.0 2.9 2 2 2 4 4 3 0 Domain of unknown function (DUF1843) CorA PF01544.18 gi|20089591|ref|NP_615666.1| - 0.082 12.2 6.7 0.64 9.3 0.5 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Cluap1 PF10234.9 gi|20089591|ref|NP_615666.1| - 0.089 12.2 7.4 0.12 11.7 7.4 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 Snapin_Pallidin PF14712.6 gi|20089591|ref|NP_615666.1| - 0.11 12.9 6.9 2.5 8.6 1.3 2.3 1 1 1 2 2 2 0 Snapin/Pallidin YojJ PF10372.9 gi|20089591|ref|NP_615666.1| - 0.11 12.6 5.5 1 9.5 0.4 2.6 2 1 1 3 3 3 0 Bacterial membrane-spanning protein N-terminus MtrB PF05440.12 gi|20089591|ref|NP_615666.1| - 0.12 12.8 3.0 13 6.2 0.3 3.0 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B Atg14 PF10186.9 gi|20089591|ref|NP_615666.1| - 0.12 11.4 5.9 0.29 10.2 5.9 1.7 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Caps_synth_GfcC PF06251.11 gi|20089591|ref|NP_615666.1| - 0.15 11.7 0.9 0.23 11.1 0.6 1.4 1 1 0 1 1 1 0 Capsule biosynthesis GfcC H-kinase_dim PF02895.14 gi|20089591|ref|NP_615666.1| - 0.15 12.5 3.1 4.2 7.8 0.3 2.9 1 1 2 3 3 3 0 Signal transducing histidine kinase, homodimeric domain DUF1664 PF07889.12 gi|20089591|ref|NP_615666.1| - 0.16 12.0 5.1 0.65 10.0 2.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HAP1_N PF04849.13 gi|20089591|ref|NP_615666.1| - 0.16 11.1 10.7 0.2 10.8 10.7 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Enkurin PF13864.6 gi|20089591|ref|NP_615666.1| - 0.17 12.3 6.9 0.64 10.5 6.4 2.0 1 1 1 2 2 2 0 Calmodulin-binding YtxH PF12732.7 gi|20089591|ref|NP_615666.1| - 0.17 12.4 2.7 4.2 8.0 2.7 2.4 1 1 0 1 1 1 0 YtxH-like protein bZIP_1 PF00170.21 gi|20089591|ref|NP_615666.1| - 0.2 11.8 12.4 0.14 12.2 1.3 3.1 2 1 0 2 2 2 0 bZIP transcription factor DNA_topoisoIV PF00521.20 gi|20089591|ref|NP_615666.1| - 0.22 10.4 7.5 0.24 10.3 7.5 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Fib_alpha PF08702.10 gi|20089591|ref|NP_615666.1| - 0.23 11.6 6.8 1.3 9.2 6.8 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Fzo_mitofusin PF04799.13 gi|20089591|ref|NP_615666.1| - 0.27 10.7 5.0 5.6 6.5 0.8 2.2 1 1 1 2 2 2 0 fzo-like conserved region SpmSyn_N PF17950.1 gi|20089591|ref|NP_615666.1| - 0.28 11.4 5.0 18 5.6 0.2 3.0 1 1 2 3 3 3 0 S-adenosylmethionine decarboxylase N -terminal DASH_Dad3 PF08656.10 gi|20089591|ref|NP_615666.1| - 0.32 11.1 4.3 2.1 8.5 4.3 2.3 1 1 0 1 1 1 0 DASH complex subunit Dad3 DUF2203 PF09969.9 gi|20089591|ref|NP_615666.1| - 0.33 11.7 4.0 0.8 10.4 0.3 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TPR_MLP1_2 PF07926.12 gi|20089591|ref|NP_615666.1| - 0.36 10.9 7.8 0.95 9.5 1.5 2.4 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Spc24 PF08286.11 gi|20089591|ref|NP_615666.1| - 0.41 10.9 7.7 1 9.7 4.2 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DASH_Dam1 PF08653.10 gi|20089591|ref|NP_615666.1| - 0.6 10.0 4.9 12 5.7 1.5 3.6 2 1 2 4 4 4 0 DASH complex subunit Dam1 YabA PF06156.13 gi|20089591|ref|NP_615666.1| - 0.62 10.7 8.5 26 5.5 8.5 2.4 1 1 0 1 1 1 0 Initiation control protein YabA Ax_dynein_light PF10211.9 gi|20089591|ref|NP_615666.1| - 0.71 9.8 10.1 2.3 8.1 1.7 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain XhlA PF10779.9 gi|20089591|ref|NP_615666.1| - 1.2 9.3 8.8 14 6.0 0.2 2.8 1 1 1 2 2 2 0 Haemolysin XhlA APG6_N PF17675.1 gi|20089591|ref|NP_615666.1| - 1.5 9.4 11.8 1.6 9.2 2.1 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Methyltransf_3 PF01596.17 gi|20089592|ref|NP_615667.1| - 1.9e-21 76.2 0.0 5.8e-20 71.4 0.0 2.0 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|20089592|ref|NP_615667.1| - 1e-13 52.2 0.0 1.5e-13 51.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|20089592|ref|NP_615667.1| - 0.00011 22.0 0.0 0.00014 21.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|20089592|ref|NP_615667.1| - 0.00033 20.5 0.0 0.00047 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089592|ref|NP_615667.1| - 0.00039 21.1 0.0 0.00074 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|20089592|ref|NP_615667.1| - 0.003 17.5 0.0 0.0042 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20089592|ref|NP_615667.1| - 0.0031 17.3 0.0 0.0051 16.6 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|20089592|ref|NP_615667.1| - 0.0039 16.7 0.0 0.0059 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase DUF1442 PF07279.11 gi|20089592|ref|NP_615667.1| - 0.016 14.5 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) Methyltransf_11 PF08241.12 gi|20089592|ref|NP_615667.1| - 0.042 14.5 0.0 0.076 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CmcI PF04989.12 gi|20089592|ref|NP_615667.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase MTS PF05175.14 gi|20089592|ref|NP_615667.1| - 0.16 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain NurA PF09376.10 gi|20089593|ref|NP_615668.1| - 0.00014 21.7 0.0 0.00029 20.6 0.0 1.6 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|20089594|ref|NP_615669.1| - 5.9e-12 46.2 0.0 1.4e-11 44.9 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|20089594|ref|NP_615669.1| - 1.8e-06 26.9 0.0 0.0024 16.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|20089594|ref|NP_615669.1| - 2.9e-06 26.4 0.0 0.0062 15.5 0.0 2.6 3 0 0 3 3 3 2 AAA-like domain AAA_22 PF13401.6 gi|20089594|ref|NP_615669.1| - 2.8e-05 24.4 0.0 0.0036 17.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|20089594|ref|NP_615669.1| - 9.8e-05 22.2 0.0 0.32 10.7 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|20089594|ref|NP_615669.1| - 0.00043 20.3 0.0 0.06 13.3 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|20089594|ref|NP_615669.1| - 0.00091 19.7 1.5 0.77 10.2 0.1 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) HAS-barrel PF09378.10 gi|20089594|ref|NP_615669.1| - 0.0045 17.1 0.1 0.05 13.8 0.0 2.5 2 1 0 2 2 2 1 HAS barrel domain AAA_7 PF12775.7 gi|20089594|ref|NP_615669.1| - 0.0049 16.4 0.0 0.0087 15.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|20089594|ref|NP_615669.1| - 0.0071 16.7 0.0 0.24 11.8 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|20089594|ref|NP_615669.1| - 0.022 14.9 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|20089594|ref|NP_615669.1| - 0.028 13.3 0.0 0.052 12.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain RNA_helicase PF00910.22 gi|20089594|ref|NP_615669.1| - 0.058 13.8 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase SopD PF11047.8 gi|20089594|ref|NP_615669.1| - 0.075 12.2 0.2 0.46 9.6 0.0 2.0 2 0 0 2 2 2 0 Salmonella outer protein D T2SSE PF00437.20 gi|20089594|ref|NP_615669.1| - 0.098 11.7 0.0 0.22 10.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|20089594|ref|NP_615669.1| - 0.11 13.1 0.0 0.31 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|20089594|ref|NP_615669.1| - 0.15 11.3 0.0 0.96 8.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.18 gi|20089594|ref|NP_615669.1| - 0.17 11.2 0.0 0.63 9.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family Flavoprotein PF02441.19 gi|20089596|ref|NP_615671.1| - 7.7e-28 97.2 0.0 9.7e-28 96.9 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.22 gi|20089598|ref|NP_615673.1| - 1.3e-11 44.8 1.2 1.3e-11 44.8 1.2 2.4 2 1 0 2 2 2 1 HD domain DUF2482 PF10655.9 gi|20089598|ref|NP_615673.1| - 0.087 13.3 1.1 0.23 12.0 0.1 2.2 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) UPF0052 PF01933.18 gi|20089599|ref|NP_615674.1| - 6.8e-49 166.7 0.0 8.5e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 FmdE PF02663.14 gi|20089600|ref|NP_615675.1| - 7.8e-20 71.3 0.0 1.7e-08 34.6 0.0 2.5 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon SAM_Ste50p PF09235.10 gi|20089600|ref|NP_615675.1| - 0.15 12.3 1.0 7.8 6.8 0.0 3.1 3 0 0 3 3 3 0 Ste50p, sterile alpha motif DUF1344 PF07076.11 gi|20089600|ref|NP_615675.1| - 0.16 11.9 2.5 22 5.1 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1344) TraU PF06834.11 gi|20089601|ref|NP_615676.1| - 0.078 12.2 0.0 0.083 12.2 0.0 1.0 1 0 0 1 1 1 0 TraU protein Rad60-SLD PF11976.8 gi|20089601|ref|NP_615676.1| - 0.12 12.3 1.4 0.16 11.8 1.4 1.2 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like DUF919 PF06034.11 gi|20089601|ref|NP_615676.1| - 3.8 7.4 10.9 7.1 6.5 10.9 1.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Pribosyltran PF00156.27 gi|20089602|ref|NP_615677.1| - 1.1e-19 70.5 0.5 1.3e-19 70.2 0.5 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|20089602|ref|NP_615677.1| - 7.6e-05 22.2 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|20089602|ref|NP_615677.1| - 0.0003 20.4 0.1 0.00043 19.8 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Diphthamide_syn PF01866.17 gi|20089603|ref|NP_615678.1| - 2.6e-84 283.2 0.0 3.2e-84 282.9 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrmA PF06325.13 gi|20089604|ref|NP_615679.1| - 2.4e-15 56.7 0.0 3.3e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|20089604|ref|NP_615679.1| - 1.2e-13 50.9 0.0 1.6e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|20089604|ref|NP_615679.1| - 1.9e-10 41.3 0.1 3.2e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089604|ref|NP_615679.1| - 2.1e-10 40.6 0.1 3.1e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089604|ref|NP_615679.1| - 4.6e-08 33.6 0.0 8.9e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|20089604|ref|NP_615679.1| - 6.5e-08 32.5 0.2 6.7e-07 29.2 0.2 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|20089604|ref|NP_615679.1| - 0.00018 21.4 0.0 0.00022 21.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|20089604|ref|NP_615679.1| - 0.00025 21.1 0.0 0.0003 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|20089604|ref|NP_615679.1| - 0.0012 18.5 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|20089604|ref|NP_615679.1| - 0.0017 18.1 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.19 gi|20089604|ref|NP_615679.1| - 0.0045 16.8 0.0 0.006 16.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|20089604|ref|NP_615679.1| - 0.0084 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|20089604|ref|NP_615679.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|20089604|ref|NP_615679.1| - 0.031 14.2 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain AviRa PF11599.8 gi|20089604|ref|NP_615679.1| - 0.037 13.5 0.0 0.052 13.0 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_12 PF08242.12 gi|20089604|ref|NP_615679.1| - 0.046 14.5 0.0 0.079 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.11 gi|20089604|ref|NP_615679.1| - 0.048 13.2 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF43 PF01861.16 gi|20089604|ref|NP_615679.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain ECR1_N PF14382.6 gi|20089605|ref|NP_615680.1| - 1e-09 38.0 0.9 2e-09 37.1 0.9 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|20089605|ref|NP_615680.1| - 1.1e-07 32.4 1.3 7.1e-06 26.6 0.3 2.6 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|20089605|ref|NP_615680.1| - 0.00089 19.6 5.2 0.13 12.6 0.8 2.6 2 0 0 2 2 2 2 S1 RNA binding domain ALS_ss_C PF10369.9 gi|20089605|ref|NP_615680.1| - 0.097 12.9 0.2 1 9.6 0.0 2.3 1 1 1 2 2 2 0 Small subunit of acetolactate synthase HypA PF01155.19 gi|20089605|ref|NP_615680.1| - 0.11 12.6 0.2 0.17 11.9 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_pol_L_2 PF13656.6 gi|20089606|ref|NP_615681.1| - 9.2e-19 67.0 0.2 1.1e-18 66.7 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|20089606|ref|NP_615681.1| - 9.6e-05 21.7 0.2 0.00035 19.9 0.2 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SepSecS PF05889.13 gi|20089607|ref|NP_615682.1| - 9.2e-56 189.2 0.0 1.8e-55 188.2 0.0 1.4 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|20089607|ref|NP_615682.1| - 2.2e-14 53.2 0.0 3.2e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|20089607|ref|NP_615682.1| - 2.6e-09 36.8 0.0 4.9e-09 35.8 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|20089607|ref|NP_615682.1| - 0.036 12.8 0.0 0.16 10.7 0.0 1.8 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Rib PF08428.10 gi|20089607|ref|NP_615682.1| - 0.068 13.2 0.2 0.16 12.0 0.2 1.5 1 0 0 1 1 1 0 Rib/alpha-like repeat Pyridoxal_deC PF00282.19 gi|20089607|ref|NP_615682.1| - 0.073 11.8 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain HTH_20 PF12840.7 gi|20089608|ref|NP_615683.1| - 0.0001 22.3 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|20089608|ref|NP_615683.1| - 0.00074 19.6 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|20089608|ref|NP_615683.1| - 0.0012 18.7 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|20089608|ref|NP_615683.1| - 0.0043 17.0 0.2 0.0067 16.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|20089608|ref|NP_615683.1| - 0.037 13.9 0.0 0.076 12.9 0.0 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB TrmB PF01978.19 gi|20089609|ref|NP_615684.1| - 1.1e-06 28.5 0.1 0.046 13.6 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB LIM PF00412.22 gi|20089609|ref|NP_615684.1| - 0.0016 18.7 1.1 0.004 17.3 1.1 1.7 1 0 0 1 1 1 1 LIM domain NMD3 PF04981.13 gi|20089609|ref|NP_615684.1| - 0.0032 17.0 0.9 0.0062 16.0 0.9 1.5 1 0 0 1 1 1 1 NMD3 family HTH_24 PF13412.6 gi|20089609|ref|NP_615684.1| - 0.0088 15.6 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20089609|ref|NP_615684.1| - 0.0089 16.1 0.0 0.037 14.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|20089609|ref|NP_615684.1| - 0.011 16.0 0.0 0.065 13.6 0.0 2.0 2 0 0 2 2 2 0 Penicillinase repressor zinc_ribbon_2 PF13240.6 gi|20089609|ref|NP_615684.1| - 0.043 13.5 0.2 0.043 13.5 0.2 2.2 3 0 0 3 3 3 0 zinc-ribbon domain HTH_IclR PF09339.10 gi|20089609|ref|NP_615684.1| - 0.052 13.3 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|20089609|ref|NP_615684.1| - 0.055 13.0 1.8 0.16 11.5 1.8 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding DUF4428 PF14471.6 gi|20089609|ref|NP_615684.1| - 0.094 12.6 0.8 0.094 12.6 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Lar_restr_allev PF14354.6 gi|20089609|ref|NP_615684.1| - 0.13 12.7 0.4 0.13 12.7 0.4 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar PadR PF03551.14 gi|20089609|ref|NP_615684.1| - 0.13 12.2 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2148 PF09918.9 gi|20089610|ref|NP_615685.1| - 2.9e-31 107.3 1.3 2.9e-31 107.3 1.3 1.6 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|20089610|ref|NP_615685.1| - 0.0011 18.6 0.8 0.0024 17.5 0.8 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster zf-UDP PF14569.6 gi|20089610|ref|NP_615685.1| - 0.055 13.6 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger cpYpsA PF12694.7 gi|20089610|ref|NP_615685.1| - 0.074 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Circularly permutated YpsA SLOG family Orn_Arg_deC_N PF02784.16 gi|20089611|ref|NP_615686.1| - 3.1e-32 111.9 0.0 3.9e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|20089611|ref|NP_615686.1| - 3.9e-20 71.9 0.0 4e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|20089611|ref|NP_615686.1| - 0.018 14.7 0.0 0.048 13.3 0.0 1.8 1 1 0 1 1 1 0 Alanine racemase, N-terminal domain DNA_pol_B_thumb PF14791.6 gi|20089612|ref|NP_615687.1| - 1.6e-22 79.4 0.1 6.8e-22 77.4 0.1 2.2 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|20089612|ref|NP_615687.1| - 1.2e-20 73.7 1.3 1.2e-20 73.7 1.3 2.8 3 0 0 3 3 2 1 Helix-hairpin-helix domain PHP PF02811.19 gi|20089612|ref|NP_615687.1| - 1.4e-12 48.2 0.0 8.7e-12 45.7 0.0 2.2 1 1 1 2 2 2 1 PHP domain HHH_5 PF14520.6 gi|20089612|ref|NP_615687.1| - 3.2e-09 37.2 6.8 1.7e-05 25.3 0.4 3.6 3 1 2 5 5 4 3 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|20089612|ref|NP_615687.1| - 1.9e-05 24.8 0.4 0.015 15.5 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|20089612|ref|NP_615687.1| - 5.5e-05 23.2 0.3 0.014 15.5 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.23 gi|20089612|ref|NP_615687.1| - 0.0015 18.3 0.9 0.027 14.3 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|20089612|ref|NP_615687.1| - 0.0018 18.4 0.0 0.0059 16.8 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta palm DUF3701 PF12482.8 gi|20089612|ref|NP_615687.1| - 0.0032 17.5 0.0 0.4 10.8 0.0 2.7 1 1 1 2 2 2 1 Phage integrase protein RNase_P_p30 PF01876.16 gi|20089612|ref|NP_615687.1| - 0.025 14.0 0.0 0.055 12.9 0.0 1.6 1 1 0 1 1 1 0 RNase P subunit p30 Cdd1 PF11731.8 gi|20089612|ref|NP_615687.1| - 0.081 13.2 0.1 0.44 10.8 0.0 2.3 2 1 0 2 2 2 0 Pathogenicity locus HRDC PF00570.23 gi|20089612|ref|NP_615687.1| - 0.11 12.5 0.2 6 6.9 0.0 2.8 2 0 0 2 2 2 0 HRDC domain HHH_6 PF14579.6 gi|20089612|ref|NP_615687.1| - 0.11 12.8 0.0 1 9.7 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|20089612|ref|NP_615687.1| - 0.16 12.3 0.3 16 6.1 0.0 3.0 2 0 0 2 2 2 0 IMS family HHH motif DNA_ligase_A_M PF01068.21 gi|20089613|ref|NP_615688.1| - 2.9e-57 193.6 2.1 4.8e-57 192.9 2.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|20089613|ref|NP_615688.1| - 3.6e-39 134.9 0.5 8.8e-39 133.6 0.2 1.9 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|20089613|ref|NP_615688.1| - 2.3e-21 76.2 0.0 1e-20 74.1 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|20089613|ref|NP_615688.1| - 1.1e-08 35.5 0.8 2.3e-08 34.5 0.8 1.5 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|20089613|ref|NP_615688.1| - 6.5e-06 26.1 0.2 0.0032 17.4 0.0 2.7 2 0 0 2 2 2 2 DNA ligase OB-like domain Vps5 PF09325.10 gi|20089613|ref|NP_615688.1| - 0.0047 16.5 0.3 0.013 15.1 0.3 1.7 1 0 0 1 1 1 1 Vps5 C terminal like DUF1978 PF09321.10 gi|20089613|ref|NP_615688.1| - 4.6 6.5 9.4 0.17 11.2 2.7 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1978) VAPB_antitox PF02697.14 gi|20089614|ref|NP_615689.1| - 0.00028 21.6 0.8 0.00036 21.2 0.1 1.6 2 0 0 2 2 2 1 Putative antitoxin LRR_RI_capping PF18779.1 gi|20089614|ref|NP_615689.1| - 0.084 12.5 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Capping Ribonuclease inhibitor Leucine Rich Repeat IPK PF03770.16 gi|20089616|ref|NP_615691.1| - 3.8e-08 33.4 1.0 5.2e-07 29.7 1.0 2.5 1 1 0 1 1 1 1 Inositol polyphosphate kinase DUF3452 PF11934.8 gi|20089616|ref|NP_615691.1| - 0.013 15.1 0.1 0.033 13.7 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3452) GyrI-like PF06445.15 gi|20089617|ref|NP_615692.1| - 0.00023 21.5 0.0 0.00027 21.3 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain GyrI-like PF06445.15 gi|20089618|ref|NP_615693.1| - 3.7e-14 53.3 0.0 3.9e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain PEMT PF04191.13 gi|20089619|ref|NP_615694.1| - 1.8e-10 41.1 3.2 1.8e-10 41.1 3.2 2.3 2 1 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|20089619|ref|NP_615694.1| - 5.6e-10 39.5 0.9 5.6e-10 39.5 0.9 2.1 3 0 0 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Phage_holin_3_6 PF07332.11 gi|20089619|ref|NP_615694.1| - 0.0063 16.5 4.3 0.0063 16.5 4.3 2.8 3 0 0 3 3 3 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2371 PF10177.9 gi|20089619|ref|NP_615694.1| - 0.029 14.5 0.1 0.051 13.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) 4HBT PF03061.22 gi|20089620|ref|NP_615695.1| - 1.8e-10 41.0 0.1 3.1e-10 40.3 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|20089620|ref|NP_615695.1| - 1.1e-05 25.6 0.5 1.7e-05 25.0 0.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 gi|20089620|ref|NP_615695.1| - 0.057 12.7 0.0 0.13 11.4 0.0 1.5 1 1 0 2 2 2 0 Polyketide synthase dehydratase Hydrolase_4 PF12146.8 gi|20089621|ref|NP_615696.1| - 3.6e-05 23.1 1.0 0.039 13.2 0.2 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|20089621|ref|NP_615696.1| - 0.00016 22.4 0.2 0.0035 18.0 0.1 2.0 1 1 1 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.18 gi|20089621|ref|NP_615696.1| - 0.00021 20.9 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|20089621|ref|NP_615696.1| - 0.00059 19.6 0.3 0.0034 17.1 0.1 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|20089621|ref|NP_615696.1| - 0.00068 19.4 0.0 0.00099 18.9 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|20089621|ref|NP_615696.1| - 0.001 18.6 0.2 0.052 13.0 0.0 2.1 1 1 1 2 2 2 1 Prolyl oligopeptidase family PAF-AH_p_II PF03403.13 gi|20089621|ref|NP_615696.1| - 0.0031 16.1 0.1 0.0043 15.6 0.1 1.3 1 1 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_2 PF02230.16 gi|20089621|ref|NP_615696.1| - 0.012 15.4 0.1 0.017 14.9 0.1 1.2 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase PGAP1 PF07819.13 gi|20089621|ref|NP_615696.1| - 0.033 13.9 0.5 0.059 13.1 0.5 1.3 1 0 0 1 1 1 0 PGAP1-like protein Chlorophyllase2 PF12740.7 gi|20089621|ref|NP_615696.1| - 0.18 10.7 0.1 0.32 9.8 0.1 1.4 1 0 0 1 1 1 0 Chlorophyllase enzyme Palm_thioest PF02089.15 gi|20089621|ref|NP_615696.1| - 0.19 11.5 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase BAAT_C PF08840.11 gi|20089621|ref|NP_615696.1| - 0.31 10.9 2.4 2.3 8.1 0.4 2.1 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Cytomega_UL84 PF06284.11 gi|20089623|ref|NP_615698.1| - 0.084 11.3 0.1 0.094 11.2 0.1 1.0 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein Fer4 PF00037.27 gi|20089624|ref|NP_615699.1| - 1e-12 47.3 13.2 2.8e-06 26.9 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Putative_PNPOx PF01243.20 gi|20089624|ref|NP_615699.1| - 7.2e-10 38.9 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fer4_16 PF13484.6 gi|20089624|ref|NP_615699.1| - 1.1e-07 32.6 11.2 0.0027 18.6 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|20089624|ref|NP_615699.1| - 1.5e-07 31.1 10.2 0.0012 18.8 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089624|ref|NP_615699.1| - 5.6e-07 30.1 21.7 1.4e-05 25.5 11.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089624|ref|NP_615699.1| - 9.1e-07 29.0 21.7 5.2e-06 26.5 11.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089624|ref|NP_615699.1| - 2.1e-06 27.7 6.9 0.0064 16.6 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089624|ref|NP_615699.1| - 3.8e-06 26.7 14.5 0.0003 20.7 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089624|ref|NP_615699.1| - 4.9e-06 26.9 6.2 0.022 15.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089624|ref|NP_615699.1| - 1.2e-05 25.3 13.2 0.0003 20.8 14.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Pyrid_ox_like PF16242.5 gi|20089624|ref|NP_615699.1| - 0.00024 20.7 0.0 0.00033 20.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Fer4_17 PF13534.6 gi|20089624|ref|NP_615699.1| - 0.0009 19.7 13.8 0.11 13.0 3.0 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Pyridox_ox_2 PF12900.7 gi|20089624|ref|NP_615699.1| - 0.002 18.1 0.0 0.0028 17.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fer4_18 PF13746.6 gi|20089624|ref|NP_615699.1| - 0.031 14.5 3.4 0.073 13.3 3.4 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089624|ref|NP_615699.1| - 0.061 13.9 12.7 0.24 12.0 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20089624|ref|NP_615699.1| - 0.064 14.2 15.2 0.14 13.2 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089624|ref|NP_615699.1| - 0.077 13.5 14.8 1.3 9.7 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20089624|ref|NP_615699.1| - 0.51 11.2 13.0 0.64 10.9 2.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20089624|ref|NP_615699.1| - 10 7.0 11.3 14 6.5 1.3 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain DUF3267 PF11667.8 gi|20089625|ref|NP_615700.1| - 3.2e-19 69.2 5.2 3.2e-19 69.2 5.2 1.9 2 0 0 2 2 2 1 Putative zincin peptidase MarR PF01047.22 gi|20089628|ref|NP_615703.1| - 4.3e-14 52.2 0.0 7.6e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|20089628|ref|NP_615703.1| - 9.9e-10 38.2 0.0 2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|20089628|ref|NP_615703.1| - 9.6e-08 32.1 0.3 2.1e-07 31.0 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|20089628|ref|NP_615703.1| - 1.1e-07 32.2 0.0 2.4e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|20089628|ref|NP_615703.1| - 3e-07 29.9 0.0 7.3e-07 28.7 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20089628|ref|NP_615703.1| - 6.2e-06 26.0 0.1 1.2e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|20089628|ref|NP_615703.1| - 2.9e-05 23.9 0.2 0.00011 22.0 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|20089628|ref|NP_615703.1| - 7e-05 22.9 0.1 0.00015 21.9 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|20089628|ref|NP_615703.1| - 0.00053 19.8 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|20089628|ref|NP_615703.1| - 0.00075 19.0 0.0 0.0022 17.5 0.0 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HxlR PF01638.17 gi|20089628|ref|NP_615703.1| - 0.0011 18.8 0.2 0.0028 17.5 0.0 1.8 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|20089628|ref|NP_615703.1| - 0.0012 18.6 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.10 gi|20089628|ref|NP_615703.1| - 0.004 17.2 0.0 0.026 14.6 0.0 2.3 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_CodY PF08222.11 gi|20089628|ref|NP_615703.1| - 0.0058 16.2 0.2 0.014 14.9 0.1 1.6 2 0 0 2 2 1 1 CodY helix-turn-helix domain KORA PF16509.5 gi|20089628|ref|NP_615703.1| - 0.0078 16.5 0.0 0.021 15.1 0.0 1.8 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor Rrf2 PF02082.20 gi|20089628|ref|NP_615703.1| - 0.0079 16.5 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|20089628|ref|NP_615703.1| - 0.01 15.9 0.4 0.033 14.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 gi|20089628|ref|NP_615703.1| - 0.013 15.2 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein HTH_36 PF13730.6 gi|20089628|ref|NP_615703.1| - 0.015 15.2 0.0 0.037 14.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|20089628|ref|NP_615703.1| - 0.018 15.0 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|20089628|ref|NP_615703.1| - 0.028 14.6 0.0 0.074 13.2 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|20089628|ref|NP_615703.1| - 0.052 13.3 0.5 0.25 11.1 0.0 2.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|20089628|ref|NP_615703.1| - 0.058 13.5 0.8 0.13 12.4 0.1 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) RB_A PF01858.17 gi|20089628|ref|NP_615703.1| - 0.081 12.7 0.3 0.14 12.0 0.1 1.5 2 0 0 2 2 2 0 Retinoblastoma-associated protein A domain HTH_10 PF04967.12 gi|20089628|ref|NP_615703.1| - 0.081 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain VirE PF05272.11 gi|20089628|ref|NP_615703.1| - 0.089 12.5 0.0 0.19 11.4 0.0 1.6 1 1 0 1 1 1 0 Virulence-associated protein E HTH_6 PF01418.17 gi|20089628|ref|NP_615703.1| - 0.11 12.5 0.1 0.37 10.8 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family HTH_1 PF00126.27 gi|20089628|ref|NP_615703.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LEM PF03020.15 gi|20089629|ref|NP_615704.1| - 0.003 17.1 0.0 0.013 15.0 0.0 2.2 1 0 0 1 1 1 1 LEM domain RIO1 PF01163.22 gi|20089629|ref|NP_615704.1| - 0.0054 16.3 0.0 0.098 12.2 0.0 2.3 1 1 0 2 2 2 1 RIO1 family ACR_tran PF00873.19 gi|20089630|ref|NP_615705.1| - 0.38 8.3 1.4 0.54 7.8 1.4 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family YdjM PF04307.14 gi|20089630|ref|NP_615705.1| - 4.2 6.7 12.9 3 7.1 10.8 2.1 1 1 1 2 2 2 0 LexA-binding, inner membrane-associated putative hydrolase Rhodanese PF00581.20 gi|20089631|ref|NP_615706.1| - 6.3e-20 71.7 0.0 7.5e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NAD_binding_8 PF13450.6 gi|20089632|ref|NP_615707.1| - 2e-08 34.3 0.0 9.7e-08 32.1 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|20089632|ref|NP_615707.1| - 4.8e-05 22.2 0.0 7.1e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|20089632|ref|NP_615707.1| - 0.00012 22.6 0.4 0.018 15.6 0.1 3.2 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|20089632|ref|NP_615707.1| - 0.00019 20.7 0.1 0.00099 18.4 0.0 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|20089632|ref|NP_615707.1| - 0.0012 18.5 0.0 0.0082 15.8 0.0 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|20089632|ref|NP_615707.1| - 0.02 14.2 0.1 0.041 13.1 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|20089632|ref|NP_615707.1| - 0.022 14.0 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 Thi4 family FAD_binding_2 PF00890.24 gi|20089632|ref|NP_615707.1| - 0.024 13.7 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain FAD_binding_3 PF01494.19 gi|20089632|ref|NP_615707.1| - 0.041 13.1 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|20089632|ref|NP_615707.1| - 0.041 13.7 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|20089632|ref|NP_615707.1| - 0.097 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|20089632|ref|NP_615707.1| - 0.18 11.1 0.0 0.3 10.3 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Maf PF02545.14 gi|20089633|ref|NP_615708.1| - 1.9e-50 170.9 0.0 2.2e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein tRNA-synt_1e PF01406.19 gi|20089634|ref|NP_615709.1| - 2.4e-104 348.9 0.0 3.1e-104 348.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|20089634|ref|NP_615709.1| - 2e-15 57.0 0.1 5.3e-15 55.6 0.0 1.7 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|20089634|ref|NP_615709.1| - 1.1e-12 47.5 0.1 6.6e-06 25.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|20089634|ref|NP_615709.1| - 4.4e-10 39.0 0.0 0.001 18.1 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|20089634|ref|NP_615709.1| - 5.2e-08 31.6 0.0 6.9e-07 27.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|20089634|ref|NP_615709.1| - 0.0043 16.0 0.0 0.011 14.7 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain DUF1447 PF07288.11 gi|20089634|ref|NP_615709.1| - 0.074 13.1 0.1 22 5.2 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) HTH_20 PF12840.7 gi|20089635|ref|NP_615710.1| - 5.2e-06 26.4 0.1 3.2e-05 23.9 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20089635|ref|NP_615710.1| - 5.6e-06 26.1 0.0 2.5e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|20089635|ref|NP_615710.1| - 6.3e-06 26.1 0.1 1.4e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.11 gi|20089635|ref|NP_615710.1| - 0.045 14.0 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 Rio2, N-terminal DUF4364 PF14277.6 gi|20089635|ref|NP_615710.1| - 0.075 12.8 0.3 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) Lon_C PF05362.13 gi|20089637|ref|NP_615712.1| - 2e-11 43.8 1.5 4.4e-11 42.7 1.5 1.7 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain HemX PF04375.14 gi|20089637|ref|NP_615712.1| - 0.001 18.4 0.3 0.0013 18.1 0.3 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase HrpB7 PF09486.10 gi|20089637|ref|NP_615712.1| - 0.0052 17.2 0.0 0.0082 16.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) YscO PF07321.12 gi|20089637|ref|NP_615712.1| - 0.015 15.2 0.4 0.024 14.6 0.4 1.2 1 0 0 1 1 1 0 Type III secretion protein YscO Pox_A_type_inc PF04508.12 gi|20089637|ref|NP_615712.1| - 0.016 15.0 0.2 0.96 9.4 0.0 2.5 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DUF4763 PF15960.5 gi|20089637|ref|NP_615712.1| - 0.017 14.4 0.4 0.025 13.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Laminin_II PF06009.12 gi|20089637|ref|NP_615712.1| - 0.02 14.9 0.2 0.035 14.1 0.2 1.4 1 0 0 1 1 1 0 Laminin Domain II bZIP_2 PF07716.15 gi|20089637|ref|NP_615712.1| - 0.058 13.5 4.1 0.074 13.1 3.3 1.6 1 1 0 1 1 1 0 Basic region leucine zipper Lipocalin_7 PF14651.6 gi|20089637|ref|NP_615712.1| - 0.065 13.2 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Lipocalin / cytosolic fatty-acid binding protein family BLOC1_2 PF10046.9 gi|20089637|ref|NP_615712.1| - 0.17 12.2 2.5 0.45 10.8 2.5 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|20089637|ref|NP_615712.1| - 0.42 10.9 1.7 1 9.6 1.7 1.6 1 1 0 1 1 1 0 Haemolysin XhlA DUF1447 PF07288.11 gi|20089637|ref|NP_615712.1| - 0.53 10.4 5.3 0.14 12.2 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) TSC22 PF01166.18 gi|20089637|ref|NP_615712.1| - 1.7 9.0 4.4 2.7 8.4 3.1 2.0 1 1 1 2 2 2 0 TSC-22/dip/bun family UPF0242 PF06785.11 gi|20089638|ref|NP_615713.1| - 0.0096 16.0 0.2 0.012 15.7 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Vps51 PF08700.11 gi|20089638|ref|NP_615713.1| - 0.043 13.9 0.2 0.074 13.1 0.2 1.4 1 0 0 1 1 1 0 Vps51/Vps67 Claudin_2 PF13903.6 gi|20089638|ref|NP_615713.1| - 0.061 13.1 1.2 3.9 7.2 0.1 2.1 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF1664 PF07889.12 gi|20089638|ref|NP_615713.1| - 0.13 12.3 0.5 0.13 12.3 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|20089638|ref|NP_615713.1| - 0.42 10.8 2.1 0.79 10.0 2.1 1.4 1 0 0 1 1 1 0 Haemolysin XhlA DivIC PF04977.15 gi|20089638|ref|NP_615713.1| - 0.97 9.2 4.4 0.65 9.8 1.2 2.2 2 1 1 3 3 3 0 Septum formation initiator ERAP1_C PF11838.8 gi|20089639|ref|NP_615714.1| - 0.046 13.3 0.0 0.049 13.2 0.0 1.1 1 0 0 1 1 1 0 ERAP1-like C-terminal domain CBAH PF02275.18 gi|20089640|ref|NP_615715.1| - 3.9e-37 128.6 0.0 4e-36 125.3 0.0 1.9 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family DUF5340 PF17275.2 gi|20089641|ref|NP_615716.1| - 9.1 6.5 7.7 3.1e+03 -1.6 7.7 3.6 1 1 0 1 1 1 0 Family of unknown function (DUF5340) Metallophos_2 PF12850.7 gi|20089642|ref|NP_615717.1| - 2.3e-05 24.6 0.1 3.9e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.16 gi|20089642|ref|NP_615717.1| - 0.034 13.5 0.0 0.14 11.5 0.0 1.8 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B PocR PF10114.9 gi|20089643|ref|NP_615718.1| - 7.8e-48 162.3 0.0 2.8e-47 160.5 0.0 2.0 1 0 0 1 1 1 1 Sensory domain found in PocR MEDS PF14417.6 gi|20089643|ref|NP_615718.1| - 3e-37 127.9 0.0 3.2e-36 124.6 0.0 2.7 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.12 gi|20089643|ref|NP_615718.1| - 1.4e-33 114.7 1.4 4.8e-33 113.1 0.5 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.12 gi|20089643|ref|NP_615718.1| - 1.3e-28 99.1 0.0 2.2e-16 59.9 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|20089643|ref|NP_615718.1| - 6.9e-23 81.0 0.0 4.2e-13 49.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|20089643|ref|NP_615718.1| - 3.9e-22 78.4 0.0 7.3e-12 45.3 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|20089643|ref|NP_615718.1| - 2.1e-20 72.9 0.0 4.4e-14 52.6 0.0 3.8 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|20089643|ref|NP_615718.1| - 8.4e-10 39.2 0.1 3.7e-09 37.1 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20089643|ref|NP_615718.1| - 2.8e-05 24.0 0.0 0.0021 18.0 0.0 3.3 4 0 0 4 4 3 1 PAS domain HATPase_c_2 PF13581.6 gi|20089643|ref|NP_615718.1| - 0.00015 21.7 0.0 0.00041 20.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20089643|ref|NP_615718.1| - 0.00048 20.8 1.4 0.0012 19.5 0.1 2.4 2 0 0 2 2 2 1 HWE histidine kinase PAS_7 PF12860.7 gi|20089643|ref|NP_615718.1| - 0.011 15.9 0.4 8.5 6.6 0.0 4.0 4 1 0 4 4 4 0 PAS fold SPOB_a PF14689.6 gi|20089643|ref|NP_615718.1| - 0.075 12.7 0.7 0.71 9.6 0.0 2.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Osmo_CC PF08946.10 gi|20089643|ref|NP_615718.1| - 3.1 8.1 7.6 0.28 11.5 1.7 2.3 2 0 0 2 2 2 0 Osmosensory transporter coiled coil PAS_9 PF13426.7 gi|20089644|ref|NP_615719.1| - 1.2e-64 215.0 1.2 3.3e-16 59.4 0.0 5.8 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|20089644|ref|NP_615719.1| - 4.8e-52 174.2 0.0 1.1e-19 70.5 0.0 5.8 5 0 0 5 5 5 5 PAS fold PocR PF10114.9 gi|20089644|ref|NP_615719.1| - 2.8e-48 163.8 0.0 1.5e-47 161.4 0.0 2.4 2 0 0 2 2 2 1 Sensory domain found in PocR MEDS PF14417.6 gi|20089644|ref|NP_615719.1| - 3.3e-45 153.8 0.0 1.1e-44 152.1 0.0 2.0 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS PF00989.25 gi|20089644|ref|NP_615719.1| - 6.3e-43 145.4 0.0 5.9e-13 48.8 0.0 5.9 6 0 0 6 6 6 4 PAS fold PAS_4 PF08448.10 gi|20089644|ref|NP_615719.1| - 1e-37 128.7 0.0 7.5e-11 42.3 0.0 5.5 5 0 0 5 5 5 4 PAS fold HisKA_2 PF07568.12 gi|20089644|ref|NP_615719.1| - 1.5e-33 114.7 2.7 3.2e-33 113.6 0.3 2.7 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.7 gi|20089644|ref|NP_615719.1| - 4.2e-31 106.4 0.1 1.1e-09 38.1 0.1 5.0 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|20089644|ref|NP_615719.1| - 1.4e-08 35.3 0.4 4.8e-08 33.5 0.4 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20089644|ref|NP_615719.1| - 1.9e-05 24.6 0.0 6.8e-05 22.8 0.1 1.9 2 0 0 2 2 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20089644|ref|NP_615719.1| - 0.00025 21.7 1.2 0.0011 19.6 0.1 2.7 2 0 0 2 2 2 1 HWE histidine kinase MEKHLA PF08670.11 gi|20089644|ref|NP_615719.1| - 0.00065 19.6 0.0 0.036 14.0 0.0 2.6 2 0 0 2 2 2 1 MEKHLA domain PAS_7 PF12860.7 gi|20089644|ref|NP_615719.1| - 0.016 15.4 2.6 81 3.4 0.0 6.0 6 1 0 6 6 6 0 PAS fold PAS_12 PF18095.1 gi|20089644|ref|NP_615719.1| - 0.026 14.2 0.0 7.4 6.2 0.0 4.0 4 0 0 4 4 4 0 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|20089644|ref|NP_615719.1| - 0.027 14.3 0.1 0.075 12.9 0.1 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|20089644|ref|NP_615719.1| - 0.086 12.6 0.0 0.4 10.4 0.0 2.2 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain tRNA-synt_2 PF00152.20 gi|20089645|ref|NP_615720.1| - 5.1e-85 285.3 0.4 6.2e-85 285.0 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|20089645|ref|NP_615720.1| - 4e-15 55.6 0.0 7.8e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|20089645|ref|NP_615720.1| - 1.7e-07 31.0 0.2 0.0011 18.4 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Amidohydro_3 PF07969.11 gi|20089646|ref|NP_615721.1| - 4.7e-119 398.9 0.0 5.4e-119 398.7 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|20089646|ref|NP_615721.1| - 5.1e-11 42.5 0.0 5.9e-08 32.4 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family DEAD_assoc PF08494.11 gi|20089647|ref|NP_615722.1| - 1.2e-33 116.5 0.0 2.4e-33 115.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|20089647|ref|NP_615722.1| - 1e-31 110.1 0.0 3.4e-31 108.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|20089647|ref|NP_615722.1| - 2.3e-22 79.5 0.2 3.7e-19 69.1 0.0 3.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|20089647|ref|NP_615722.1| - 4.9e-09 36.4 0.0 8.9e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.14 gi|20089647|ref|NP_615722.1| - 0.044 12.6 0.0 0.077 11.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_19 PF13245.6 gi|20089647|ref|NP_615722.1| - 0.071 13.4 0.2 0.54 10.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain FAT PF02259.23 gi|20089647|ref|NP_615722.1| - 0.087 12.0 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 FAT domain AAA_25 PF13481.6 gi|20089647|ref|NP_615722.1| - 0.1 12.2 0.2 2.9 7.4 0.0 2.9 2 1 0 2 2 2 0 AAA domain DUF3600 PF12207.8 gi|20089647|ref|NP_615722.1| - 0.18 11.7 0.1 0.51 10.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3600) AAA_22 PF13401.6 gi|20089647|ref|NP_615722.1| - 0.25 11.6 0.6 2.7 8.3 0.5 2.7 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|20089648|ref|NP_615723.1| - 0.00018 22.0 0.0 0.00084 19.8 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain DUF2120 PF09893.9 gi|20089648|ref|NP_615723.1| - 0.11 12.6 0.7 0.67 10.1 0.1 2.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) HEAT_2 PF13646.6 gi|20089648|ref|NP_615723.1| - 0.13 12.7 0.1 2.8 8.4 0.0 3.1 3 0 0 3 3 3 0 HEAT repeats HicB_lk_antitox PF15919.5 gi|20089649|ref|NP_615724.1| - 3.8e-12 46.4 0.0 4.6e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|20089649|ref|NP_615724.1| - 3.6e-05 23.7 0.0 4.7e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) HicA_toxin PF07927.12 gi|20089650|ref|NP_615725.1| - 1.4e-20 73.0 0.4 1.7e-20 72.8 0.4 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, NTP_transf_2 PF01909.23 gi|20089651|ref|NP_615726.1| - 2.8e-17 62.8 0.3 3.2e-17 62.6 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20089651|ref|NP_615726.1| - 4.3e-16 58.8 0.1 4.8e-16 58.6 0.1 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|20089651|ref|NP_615726.1| - 0.0027 17.9 0.0 0.0029 17.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF86 PF01934.17 gi|20089652|ref|NP_615727.1| - 3.1e-25 88.3 0.2 3.6e-25 88.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 ABC2_membrane_3 PF12698.7 gi|20089653|ref|NP_615728.1| - 0.017 14.3 2.4 0.02 14.0 2.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Fib_alpha PF08702.10 gi|20089653|ref|NP_615728.1| - 0.13 12.5 0.7 0.2 11.8 0.7 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Methyltransf_11 PF08241.12 gi|20089654|ref|NP_615729.1| - 9.8e-24 83.8 0.0 2.1e-23 82.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089654|ref|NP_615729.1| - 1.3e-22 80.3 0.0 2.2e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089654|ref|NP_615729.1| - 2.7e-22 79.2 0.0 4e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089654|ref|NP_615729.1| - 3.1e-15 56.7 0.0 5.6e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089654|ref|NP_615729.1| - 4.8e-15 55.8 0.0 7.7e-15 55.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089654|ref|NP_615729.1| - 6.4e-14 51.8 0.0 1.1e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20089654|ref|NP_615729.1| - 3.8e-07 29.8 0.0 8.2e-07 28.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|20089654|ref|NP_615729.1| - 1.1e-05 25.2 0.0 2.2e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|20089654|ref|NP_615729.1| - 0.00064 19.7 0.0 0.00093 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|20089654|ref|NP_615729.1| - 0.0016 18.1 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|20089654|ref|NP_615729.1| - 0.0019 17.7 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|20089654|ref|NP_615729.1| - 0.0022 17.4 0.0 0.0031 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 gi|20089654|ref|NP_615729.1| - 0.0035 16.9 0.0 0.58 9.6 0.0 2.7 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain TPMT PF05724.11 gi|20089654|ref|NP_615729.1| - 0.0055 16.4 0.0 0.0086 15.8 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RQC PF09382.10 gi|20089654|ref|NP_615729.1| - 0.0059 16.4 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 RQC domain CMAS PF02353.20 gi|20089654|ref|NP_615729.1| - 0.019 14.3 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|20089654|ref|NP_615729.1| - 0.022 14.7 0.0 0.06 13.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain DREV PF05219.12 gi|20089654|ref|NP_615729.1| - 0.085 11.9 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_15 PF09445.10 gi|20089654|ref|NP_615729.1| - 0.098 12.2 0.0 4.5 6.8 0.0 2.1 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|20089654|ref|NP_615729.1| - 0.17 11.6 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N_2 PF13602.6 gi|20089655|ref|NP_615730.1| - 5.9e-18 66.2 0.0 1.1e-17 65.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|20089655|ref|NP_615730.1| - 1.7e-10 40.9 0.0 4.9e-10 39.5 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|20089655|ref|NP_615730.1| - 2.1e-10 40.4 0.0 4.9e-09 36.1 0.0 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain Semialdhyde_dh PF01118.24 gi|20089655|ref|NP_615730.1| - 0.026 15.0 0.0 0.054 13.9 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|20089655|ref|NP_615730.1| - 0.095 12.8 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF1232 PF06803.12 gi|20089656|ref|NP_615731.1| - 7.5e-13 48.0 9.5 1.1e-12 47.6 9.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) ADH_zinc_N_2 PF13602.6 gi|20089657|ref|NP_615732.1| - 1e-27 97.8 0.1 1.8e-27 97.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|20089657|ref|NP_615732.1| - 5e-17 62.1 0.0 8.1e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|20089657|ref|NP_615732.1| - 3.8e-09 36.4 0.1 2.7e-08 33.7 0.1 2.1 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Plant_vir_prot PF01307.17 gi|20089658|ref|NP_615733.1| - 0.33 11.2 1.4 0.66 10.2 1.4 1.7 1 1 0 1 1 1 0 Plant viral movement protein Acetyltransf_4 PF13420.7 gi|20089659|ref|NP_615734.1| - 4.9e-17 62.5 0.0 5.9e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20089659|ref|NP_615734.1| - 3.6e-15 56.2 0.0 5.4e-15 55.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|20089659|ref|NP_615734.1| - 9.3e-11 42.6 0.0 1.2e-10 42.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20089659|ref|NP_615734.1| - 7.3e-10 38.9 0.0 1.2e-09 38.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20089659|ref|NP_615734.1| - 1.3e-08 35.1 0.0 2.3e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20089659|ref|NP_615734.1| - 0.00082 19.3 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|20089659|ref|NP_615734.1| - 0.0012 18.9 0.0 0.0032 17.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain TaqI_C PF12950.7 gi|20089660|ref|NP_615735.1| - 0.0015 18.6 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Acetyltransf_10 PF13673.7 gi|20089660|ref|NP_615735.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HisKA_7TM PF16927.5 gi|20089661|ref|NP_615736.1| - 3.1e-52 177.8 24.2 4e-52 177.4 24.2 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|20089661|ref|NP_615736.1| - 6.5e-12 46.0 0.2 3.1e-11 43.8 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|20089661|ref|NP_615736.1| - 2.9e-09 36.9 0.0 6.2e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|20089661|ref|NP_615736.1| - 7.9e-07 29.0 0.0 1.8e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|20089661|ref|NP_615736.1| - 1e-06 28.9 0.2 3.3e-06 27.3 0.1 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|20089661|ref|NP_615736.1| - 7e-05 23.0 0.0 0.0057 16.9 0.0 2.3 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|20089661|ref|NP_615736.1| - 0.00031 20.4 0.4 0.00089 18.9 0.2 1.8 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|20089661|ref|NP_615736.1| - 0.0061 16.5 0.0 0.015 15.3 0.0 1.6 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|20089661|ref|NP_615736.1| - 0.15 11.6 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase DUF2207 PF09972.9 gi|20089661|ref|NP_615736.1| - 0.28 9.9 5.3 0.49 9.1 5.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) 7TM-7TMR_HD PF07698.11 gi|20089662|ref|NP_615737.1| - 0.0016 18.2 0.6 0.002 17.9 0.6 1.1 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase DUF2613 PF11021.8 gi|20089662|ref|NP_615737.1| - 0.01 16.0 0.2 0.017 15.2 0.0 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2613) 7TM_GPCR_Srv PF10323.9 gi|20089662|ref|NP_615737.1| - 0.011 15.1 0.1 0.011 15.1 0.1 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srv TrbC PF04956.13 gi|20089662|ref|NP_615737.1| - 0.021 15.1 2.9 0.096 12.9 2.5 1.9 1 1 1 2 2 2 0 TrbC/VIRB2 family Fumarate_red_C PF02300.17 gi|20089662|ref|NP_615737.1| - 0.063 13.4 0.0 0.08 13.0 0.0 1.2 1 0 0 1 1 1 0 Fumarate reductase subunit C DUF1129 PF06570.11 gi|20089662|ref|NP_615737.1| - 0.065 12.7 0.2 0.066 12.7 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Deltameth_res PF16020.5 gi|20089662|ref|NP_615737.1| - 0.083 12.8 0.9 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 Deltamethrin resistance URO-D PF01208.17 gi|20089663|ref|NP_615738.1| - 1.9e-80 270.6 0.0 2.1e-80 270.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) BIR PF00653.21 gi|20089663|ref|NP_615738.1| - 0.067 13.8 0.2 0.15 12.8 0.1 1.5 2 0 0 2 2 2 0 Inhibitor of Apoptosis domain EamA PF00892.20 gi|20089664|ref|NP_615739.1| - 8.8e-29 100.4 36.9 2e-15 57.1 11.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|20089664|ref|NP_615739.1| - 0.0087 15.4 12.9 0.028 13.8 13.1 1.8 1 1 0 1 1 1 1 Triose-phosphate Transporter family DUF3493 PF11998.8 gi|20089664|ref|NP_615739.1| - 0.044 13.9 2.5 1 9.6 0.1 2.7 2 0 0 2 2 2 0 Low psii accumulation1 / Rep27 YjcB PF15940.5 gi|20089664|ref|NP_615739.1| - 0.33 11.2 10.3 0.8 9.9 0.1 4.2 4 1 0 4 4 4 0 Family of unknown function Cupin_2 PF07883.11 gi|20089665|ref|NP_615740.1| - 1.9e-09 37.1 0.1 4.1e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|20089665|ref|NP_615740.1| - 1.2e-05 24.8 0.2 2.4e-05 23.9 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.14 gi|20089665|ref|NP_615740.1| - 5.6e-05 23.4 0.9 0.00012 22.3 0.1 1.9 2 0 0 2 2 2 1 ARD/ARD' family AraC_binding PF02311.19 gi|20089665|ref|NP_615740.1| - 0.00023 21.1 1.0 0.0009 19.2 0.0 2.4 3 0 0 3 3 3 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|20089665|ref|NP_615740.1| - 0.0012 18.5 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 gi|20089665|ref|NP_615740.1| - 0.017 14.9 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Cupin AraC_binding_2 PF14525.6 gi|20089665|ref|NP_615740.1| - 0.031 13.9 0.0 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 AraC-binding-like domain EutQ PF06249.12 gi|20089665|ref|NP_615740.1| - 0.053 13.3 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Acetyltransf_18 PF18014.1 gi|20089666|ref|NP_615741.1| - 1.7e-32 111.9 0.0 5.7e-32 110.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20089666|ref|NP_615741.1| - 1.6e-10 41.2 0.1 3.2e-09 37.0 0.0 2.6 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20089666|ref|NP_615741.1| - 1.2e-07 31.7 0.0 8.6e-06 25.7 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20089666|ref|NP_615741.1| - 1.9e-06 28.2 0.0 3.9e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20089666|ref|NP_615741.1| - 0.0079 16.3 0.0 1.7 8.8 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20089666|ref|NP_615741.1| - 0.057 13.6 0.0 0.33 11.1 0.0 2.2 2 1 0 2 2 2 0 GCN5-related N-acetyl-transferase DUF5050 PF16472.5 gi|20089667|ref|NP_615742.1| - 1.6e-12 47.3 18.7 2.5e-07 30.2 6.3 2.5 1 1 2 3 3 3 3 Domain of unknown function (DUF5050) PD40 PF07676.12 gi|20089667|ref|NP_615742.1| - 4.9e-12 45.4 14.7 0.13 12.2 0.1 7.2 7 0 0 7 7 7 5 WD40-like Beta Propeller Repeat Kelch_4 PF13418.6 gi|20089667|ref|NP_615742.1| - 0.00024 21.1 1.8 6.2 6.9 0.0 4.9 5 0 0 5 5 5 1 Galactose oxidase, central domain Pectate_lyase22 PF14583.6 gi|20089667|ref|NP_615742.1| - 0.0007 18.4 0.4 0.02 13.5 0.1 2.7 2 1 1 3 3 3 1 Oligogalacturonate lyase DUF3155 PF11352.8 gi|20089667|ref|NP_615742.1| - 0.0083 16.5 0.0 0.88 10.0 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF3155) Aha1_N PF09229.11 gi|20089667|ref|NP_615742.1| - 0.031 14.5 3.5 15 5.8 0.0 3.5 2 1 0 3 3 3 0 Activator of Hsp90 ATPase, N-terminal PNGaseA PF12222.8 gi|20089667|ref|NP_615742.1| - 0.1 11.5 3.9 2.7 6.8 0.6 2.7 2 1 1 3 3 3 0 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A SUKH_6 PF14568.6 gi|20089667|ref|NP_615742.1| - 0.14 12.5 12.6 22 5.5 0.0 5.1 2 1 4 6 6 6 0 SMI1-KNR4 cell-wall Kelch_5 PF13854.6 gi|20089667|ref|NP_615742.1| - 0.28 11.2 4.3 50 4.0 0.1 4.4 4 0 0 4 4 4 0 Kelch motif PQQ PF01011.21 gi|20089667|ref|NP_615742.1| - 0.33 10.9 5.0 12 6.1 0.0 4.7 6 0 0 6 6 6 0 PQQ enzyme repeat Pilin PF00114.19 gi|20089667|ref|NP_615742.1| - 0.86 10.6 6.8 11 7.0 1.6 3.6 2 1 1 3 3 3 0 Pilin (bacterial filament) DUF4811 PF16069.5 gi|20089667|ref|NP_615742.1| - 1.3 8.9 3.6 4.2 7.2 0.5 3.1 2 1 2 4 4 4 0 Domain of unknown function (DUF4811) UPF0029 PF01205.19 gi|20089668|ref|NP_615743.1| - 3.6e-28 98.0 0.0 5e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|20089668|ref|NP_615743.1| - 3.6e-10 39.6 0.3 9.1e-10 38.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) BPD_transp_1 PF00528.22 gi|20089671|ref|NP_615746.1| - 4.5e-18 65.6 7.6 6.1e-18 65.2 7.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|20089672|ref|NP_615747.1| - 9.9e-31 107.1 0.0 1.1e-30 106.9 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089672|ref|NP_615747.1| - 0.00011 22.2 0.0 0.00017 21.5 0.0 1.4 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20089672|ref|NP_615747.1| - 0.00024 20.8 0.0 0.0004 20.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|20089672|ref|NP_615747.1| - 0.00035 20.1 0.1 0.12 11.8 0.1 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20089672|ref|NP_615747.1| - 0.00053 19.8 0.0 0.00055 19.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20089672|ref|NP_615747.1| - 0.0013 18.6 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|20089672|ref|NP_615747.1| - 0.0023 18.3 0.0 0.0028 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|20089672|ref|NP_615747.1| - 0.0024 17.9 0.0 0.0027 17.6 0.0 1.1 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|20089672|ref|NP_615747.1| - 0.0025 18.3 0.0 0.0029 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|20089672|ref|NP_615747.1| - 0.0062 16.7 0.0 0.0065 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20089672|ref|NP_615747.1| - 0.0069 16.7 0.0 0.0095 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|20089672|ref|NP_615747.1| - 0.013 15.2 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|20089672|ref|NP_615747.1| - 0.017 14.3 0.0 0.035 13.3 0.0 1.4 1 1 1 2 2 2 0 G-protein alpha subunit AAA_18 PF13238.6 gi|20089672|ref|NP_615747.1| - 0.017 15.6 0.0 0.024 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|20089672|ref|NP_615747.1| - 0.02 13.9 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|20089672|ref|NP_615747.1| - 0.027 14.4 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain IIGP PF05049.13 gi|20089672|ref|NP_615747.1| - 0.035 13.2 0.0 0.042 12.9 0.0 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_25 PF13481.6 gi|20089672|ref|NP_615747.1| - 0.041 13.5 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20089672|ref|NP_615747.1| - 0.074 12.8 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|20089672|ref|NP_615747.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATPase_2 PF01637.18 gi|20089672|ref|NP_615747.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Spore_IV_A PF09547.10 gi|20089672|ref|NP_615747.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) IstB_IS21 PF01695.17 gi|20089672|ref|NP_615747.1| - 0.15 11.8 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|20089672|ref|NP_615747.1| - 0.17 12.3 0.1 0.82 10.1 0.1 2.1 1 1 1 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|20089672|ref|NP_615747.1| - 0.18 12.0 0.1 0.26 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|20089672|ref|NP_615747.1| - 0.2 11.4 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_21 PF13304.6 gi|20089673|ref|NP_615748.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|20089673|ref|NP_615748.1| - 0.018 13.7 0.0 0.018 13.7 0.0 1.0 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|20089673|ref|NP_615748.1| - 0.035 13.5 0.0 0.041 13.3 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain UbiA PF01040.18 gi|20089674|ref|NP_615749.1| - 2.8e-31 108.7 13.3 3.5e-31 108.4 13.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF373 PF04123.13 gi|20089674|ref|NP_615749.1| - 0.11 11.9 4.2 2.2 7.6 2.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF1516 PF07457.11 gi|20089674|ref|NP_615749.1| - 0.73 10.1 0.1 0.73 10.1 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF1516) UbiA PF01040.18 gi|20089675|ref|NP_615750.1| - 6.1e-32 110.9 12.6 9.1e-32 110.3 12.6 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1516 PF07457.11 gi|20089675|ref|NP_615750.1| - 0.033 14.4 6.9 1.8 8.8 0.4 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1516) Amidinotransf PF02274.17 gi|20089676|ref|NP_615751.1| - 1.9e-32 112.7 0.0 3.6e-31 108.5 0.0 2.0 1 1 0 1 1 1 1 Amidinotransferase HNHc_6 PF16784.5 gi|20089676|ref|NP_615751.1| - 0.043 13.4 0.0 0.15 11.6 0.0 1.8 1 1 1 2 2 2 0 Putative HNHc nuclease DUF1184 PF06683.11 gi|20089676|ref|NP_615751.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) Methyltransf_33 PF10017.9 gi|20089677|ref|NP_615752.1| - 4.6e-26 91.7 0.0 5.8e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Radical_SAM PF04055.21 gi|20089678|ref|NP_615753.1| - 1.9e-14 54.4 0.0 3e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20089678|ref|NP_615753.1| - 9.9e-10 38.8 0.0 5.7e-09 36.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20089678|ref|NP_615753.1| - 6.2e-08 32.8 0.0 1.3e-07 31.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|20089678|ref|NP_615753.1| - 1e-05 26.0 3.3 1.1e-05 25.9 0.9 2.3 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain B12-binding PF02310.19 gi|20089678|ref|NP_615753.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain Radical_SAM PF04055.21 gi|20089679|ref|NP_615754.1| - 7e-09 36.3 0.0 1.1e-08 35.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20089679|ref|NP_615754.1| - 0.055 13.7 0.0 0.093 13.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1848 PF08902.11 gi|20089679|ref|NP_615754.1| - 0.17 11.6 4.8 0.38 10.4 2.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) CMD PF02627.20 gi|20089680|ref|NP_615755.1| - 0.0011 19.0 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Polysacc_deac_1 PF01522.21 gi|20089681|ref|NP_615756.1| - 3.9e-23 81.7 0.0 5.4e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|20089681|ref|NP_615756.1| - 0.00064 19.4 0.1 0.0036 17.0 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF2194 PF09960.9 gi|20089681|ref|NP_615756.1| - 0.24 9.7 0.0 0.3 9.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) Glycos_transf_1 PF00534.20 gi|20089682|ref|NP_615757.1| - 1e-37 129.3 0.1 6.4e-37 126.7 0.1 2.1 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20089682|ref|NP_615757.1| - 4.6e-29 101.6 0.0 2.6e-27 95.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|20089682|ref|NP_615757.1| - 3.6e-26 92.2 0.0 4.9e-25 88.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20089682|ref|NP_615757.1| - 6.2e-21 75.5 0.0 9.2e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|20089682|ref|NP_615757.1| - 2.7e-14 53.4 0.0 5.4e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|20089682|ref|NP_615757.1| - 4.4e-08 33.4 0.0 7.7e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|20089682|ref|NP_615757.1| - 3.2e-05 23.8 0.0 0.0001 22.1 0.0 1.9 2 1 0 2 2 2 1 Starch synthase catalytic domain PIGA PF08288.12 gi|20089682|ref|NP_615757.1| - 0.00038 21.0 0.0 0.00081 19.9 0.0 1.6 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_transf_28 PF03033.20 gi|20089682|ref|NP_615757.1| - 0.048 13.7 0.0 0.15 12.1 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain LPG_synthase_TM PF03706.13 gi|20089683|ref|NP_615758.1| - 5.2e-39 134.6 31.0 6.4e-39 134.3 31.0 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Cupredoxin_1 PF13473.6 gi|20089684|ref|NP_615759.1| - 5.7e-27 93.9 0.8 7.9e-14 51.6 0.1 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain Copper-bind PF00127.20 gi|20089684|ref|NP_615759.1| - 5.3e-07 30.0 5.4 0.0059 17.0 0.3 4.2 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Y_Y_Y PF07495.13 gi|20089684|ref|NP_615759.1| - 0.00013 21.8 0.5 0.59 10.1 0.0 2.9 2 0 0 2 2 2 2 Y_Y_Y domain DUF5640 PF18692.1 gi|20089684|ref|NP_615759.1| - 0.0002 21.3 4.0 0.084 12.9 0.3 2.7 2 0 0 2 2 2 2 Family of unknown function (DUF5640) PKD PF00801.20 gi|20089684|ref|NP_615759.1| - 0.095 12.6 1.6 6.7 6.6 0.1 2.6 2 0 0 2 2 2 0 PKD domain DUF4330 PF14221.6 gi|20089684|ref|NP_615759.1| - 0.22 11.8 1.8 13 6.0 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4330) PPC PF04151.15 gi|20089684|ref|NP_615759.1| - 3.1 8.9 7.5 1.2 10.3 0.1 2.9 3 1 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain DUF1724 PF08350.10 gi|20089686|ref|NP_615761.1| - 1.8e-21 76.0 0.0 5.9e-21 74.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1724 PF08350.10 gi|20089687|ref|NP_615762.1| - 3.4e-22 78.3 0.0 8e-22 77.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089687|ref|NP_615762.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20089687|ref|NP_615762.1| - 0.14 12.2 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_25 PF13649.6 gi|20089688|ref|NP_615763.1| - 6.2e-17 62.1 0.0 1.3e-16 61.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089688|ref|NP_615763.1| - 3.2e-15 56.6 0.0 4.9e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089688|ref|NP_615763.1| - 1.4e-09 37.9 0.0 2e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20089688|ref|NP_615763.1| - 1.3e-07 31.2 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|20089688|ref|NP_615763.1| - 1e-06 28.3 0.0 1.7e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20089688|ref|NP_615763.1| - 1.5e-05 25.6 0.0 2.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089688|ref|NP_615763.1| - 0.00015 21.7 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|20089688|ref|NP_615763.1| - 0.00026 20.9 0.0 0.0071 16.2 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|20089688|ref|NP_615763.1| - 0.039 12.5 0.0 0.049 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF938 PF06080.12 gi|20089688|ref|NP_615763.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Cation_efflux PF01545.21 gi|20089689|ref|NP_615764.1| - 1.5e-40 139.0 11.3 1.9e-40 138.7 11.3 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|20089689|ref|NP_615764.1| - 4.9e-19 68.2 0.3 9.1e-19 67.4 0.3 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF3526 PF12040.8 gi|20089689|ref|NP_615764.1| - 0.14 12.7 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3526) DUF5602 PF18197.1 gi|20089690|ref|NP_615765.1| - 2.9e-20 72.5 0.4 1.2e-14 54.6 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF5602) APC_15aa PF05972.11 gi|20089690|ref|NP_615765.1| - 0.017 15.3 1.1 0.043 14.1 1.1 1.7 1 0 0 1 1 1 0 APC 15 residue motif NpwBP PF12622.7 gi|20089690|ref|NP_615765.1| - 9 7.2 7.7 3.8 8.3 2.5 2.6 1 1 1 2 2 2 0 mRNA biogenesis factor NifU_N PF01592.16 gi|20089691|ref|NP_615766.1| - 6.2e-43 146.0 0.0 1.1e-42 145.3 0.0 1.3 1 0 0 1 1 1 1 NifU-like N terminal domain FeS_assembly_P PF01883.19 gi|20089691|ref|NP_615766.1| - 6.7e-13 48.6 2.9 9.4e-13 48.1 1.4 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein TSCPD PF12637.7 gi|20089691|ref|NP_615766.1| - 0.03 14.6 0.0 0.063 13.5 0.0 1.5 1 0 0 1 1 1 0 TSCPD domain E2F_TDP PF02319.20 gi|20089691|ref|NP_615766.1| - 0.033 14.2 0.0 0.077 13.1 0.0 1.5 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain Aminotran_5 PF00266.19 gi|20089692|ref|NP_615767.1| - 9.9e-69 232.0 0.0 1.4e-68 231.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|20089692|ref|NP_615767.1| - 9.3e-08 31.8 0.1 2.1e-07 30.6 0.1 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|20089692|ref|NP_615767.1| - 0.00031 19.4 0.2 0.00055 18.6 0.1 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|20089692|ref|NP_615767.1| - 0.00041 19.7 0.1 0.00056 19.3 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase B12-binding PF02310.19 gi|20089692|ref|NP_615767.1| - 0.039 14.0 0.0 0.2 11.7 0.0 2.1 1 1 1 2 2 2 0 B12 binding domain Aminotran_1_2 PF00155.21 gi|20089692|ref|NP_615767.1| - 0.051 12.7 0.0 0.066 12.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II SepSecS PF05889.13 gi|20089692|ref|NP_615767.1| - 0.097 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DrsE_2 PF13686.6 gi|20089693|ref|NP_615768.1| - 2.6e-37 128.1 3.4 1.4e-22 80.2 0.6 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|20089693|ref|NP_615768.1| - 6.3e-06 26.6 0.0 1.2e-05 25.7 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.10 gi|20089693|ref|NP_615768.1| - 10 6.1 6.5 21 5.0 0.0 2.9 4 0 0 4 4 4 0 Anti-repressor SinI TusA PF01206.17 gi|20089694|ref|NP_615769.1| - 1.1e-21 76.4 0.2 1.3e-21 76.2 0.2 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA HIT PF01230.23 gi|20089695|ref|NP_615770.1| - 4.6e-31 107.5 0.0 6.2e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|20089695|ref|NP_615770.1| - 3e-18 66.4 0.0 3.8e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|20089695|ref|NP_615770.1| - 7.2e-05 22.7 0.0 0.0001 22.1 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 SipA_VBS PF17985.1 gi|20089695|ref|NP_615770.1| - 0.15 12.0 0.1 0.65 10.0 0.1 2.1 1 0 0 1 1 1 0 SipA vinculin binding site DUF5518 PF17647.1 gi|20089696|ref|NP_615771.1| - 6.9e-10 39.1 33.1 8e-10 38.9 33.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) CARDB PF07705.11 gi|20089697|ref|NP_615772.1| - 9.2e-143 465.8 33.4 1.3e-31 108.9 1.5 6.0 6 0 0 6 6 5 5 CARDB DUF11 PF01345.18 gi|20089697|ref|NP_615772.1| - 4e-07 30.2 10.2 2.5 8.4 0.1 6.9 4 3 0 4 4 4 3 Domain of unknown function DUF11 DUF4832 PF16116.5 gi|20089697|ref|NP_615772.1| - 1.6e-06 28.1 0.0 0.37 10.6 0.0 4.6 5 0 0 5 5 5 2 Domain of unknown function (DUF4832) NPCBM_assoc PF10633.9 gi|20089697|ref|NP_615772.1| - 1.5e-05 25.2 4.1 4.2 7.7 0.0 5.4 5 0 0 5 5 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase ASH PF15780.5 gi|20089697|ref|NP_615772.1| - 0.0012 19.1 6.9 0.57 10.4 0.1 5.2 4 1 2 6 6 6 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Lysyl_oxidase PF01186.17 gi|20089697|ref|NP_615772.1| - 0.0016 18.2 4.2 11 5.6 0.0 4.4 4 0 0 4 4 4 1 Lysyl oxidase CBM60 PF16841.5 gi|20089697|ref|NP_615772.1| - 0.0076 16.6 0.4 15 6.1 0.0 3.7 3 0 0 3 3 3 1 Ca-dependent carbohydrate-binding module xylan-binding DUF3421 PF11901.8 gi|20089697|ref|NP_615772.1| - 0.03 14.3 0.4 41 4.2 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3421) DUF824 PF05688.11 gi|20089697|ref|NP_615772.1| - 0.21 11.4 2.6 29 4.6 0.1 4.0 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) Big_3_5 PF16640.5 gi|20089697|ref|NP_615772.1| - 0.32 11.2 18.9 0.15 12.2 4.4 5.2 5 0 0 5 5 5 0 Bacterial Ig-like domain (group 3) Serglycin PF04360.12 gi|20089697|ref|NP_615772.1| - 0.52 10.3 7.2 0.51 10.3 5.3 1.9 2 0 0 2 2 2 0 Serglycin DUF4891 PF16232.5 gi|20089698|ref|NP_615773.1| - 0.038 14.5 0.2 0.16 12.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4891) tRNA-synt_1b PF00579.25 gi|20089699|ref|NP_615774.1| - 2.6e-56 191.1 0.0 3.1e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|20089699|ref|NP_615774.1| - 0.092 11.6 0.0 4 6.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) Msg2_C PF12373.8 gi|20089699|ref|NP_615774.1| - 0.26 10.7 2.0 0.51 9.8 2.0 1.5 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal Thg1C PF14413.6 gi|20089700|ref|NP_615775.1| - 0.0004 20.5 0.1 0.00042 20.5 0.1 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.12 gi|20089701|ref|NP_615776.1| - 5.7e-23 81.3 0.0 6.6e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 tRNAHis guanylyltransferase PRC PF05239.16 gi|20089702|ref|NP_615777.1| - 1.2e-14 54.1 1.1 1.6e-14 53.7 1.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain Ldh_1_N PF00056.23 gi|20089703|ref|NP_615778.1| - 2.9e-37 127.9 1.4 4.5e-37 127.3 1.4 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|20089703|ref|NP_615778.1| - 1.1e-26 93.7 0.0 1.9e-26 93.0 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|20089703|ref|NP_615778.1| - 1.7e-05 24.5 2.2 5.9e-05 22.7 0.1 2.3 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|20089703|ref|NP_615778.1| - 0.00049 19.7 1.6 0.0015 18.1 1.6 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|20089703|ref|NP_615778.1| - 0.036 14.1 0.1 0.085 12.9 0.1 1.8 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|20089703|ref|NP_615778.1| - 0.34 11.5 2.0 0.59 10.8 0.6 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent RNase_H_2 PF13482.6 gi|20089704|ref|NP_615779.1| - 8.7e-37 126.7 0.0 1.2e-36 126.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|20089704|ref|NP_615779.1| - 0.013 15.2 0.0 0.43 10.2 0.0 2.2 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_T PF00929.24 gi|20089704|ref|NP_615779.1| - 0.043 14.4 0.0 0.23 12.0 0.0 2.1 1 1 1 2 2 2 0 Exonuclease HHH_5 PF14520.6 gi|20089704|ref|NP_615779.1| - 0.14 12.7 0.0 0.46 11.1 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain GPI PF06560.11 gi|20089705|ref|NP_615780.1| - 9.7e-48 161.8 0.1 1.2e-47 161.5 0.1 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|20089705|ref|NP_615780.1| - 0.0012 18.5 0.1 0.0036 17.0 0.1 2.0 1 1 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|20089705|ref|NP_615780.1| - 0.037 13.6 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Cupin NRD1_2 PF01995.16 gi|20089706|ref|NP_615781.1| - 1.3e-97 325.7 0.7 1.5e-97 325.6 0.7 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 DHHA1 PF02272.19 gi|20089707|ref|NP_615782.1| - 4.5e-19 69.2 1.0 1.1e-18 67.9 1.0 1.7 1 0 0 1 1 1 1 DHHA1 domain SelA PF03841.13 gi|20089707|ref|NP_615782.1| - 0.011 14.7 0.0 0.028 13.4 0.0 1.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Arm-DNA-bind_2 PF12167.8 gi|20089707|ref|NP_615782.1| - 0.019 14.9 1.0 2.2 8.3 0.4 3.0 3 0 0 3 3 3 0 Arm DNA-binding domain Radical_SAM_C PF16199.5 gi|20089710|ref|NP_615785.1| - 2.7e-27 94.6 0.1 5.7e-27 93.6 0.1 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|20089710|ref|NP_615785.1| - 2.5e-18 67.0 0.0 8.6e-18 65.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|20089710|ref|NP_615785.1| - 9.4e-09 35.5 0.4 2.2e-08 34.3 0.4 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20089710|ref|NP_615785.1| - 2.4e-06 27.5 0.2 5.8e-06 26.3 0.2 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20089710|ref|NP_615785.1| - 0.00085 19.7 0.1 0.0018 18.7 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain zinc_ribbon_4 PF13717.6 gi|20089710|ref|NP_615785.1| - 0.011 15.7 1.4 0.023 14.6 1.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|20089710|ref|NP_615785.1| - 0.018 14.8 1.7 0.058 13.2 1.7 1.8 1 0 0 1 1 1 0 zinc-ribbon domain HMG_box_5 PF14887.6 gi|20089711|ref|NP_615786.1| - 0.13 12.3 0.1 0.26 11.3 0.1 1.5 1 0 0 1 1 1 0 HMG (high mobility group) box 5 S-layer PF07752.11 gi|20089713|ref|NP_615788.1| - 3.7e-156 517.8 38.9 2.1e-79 266.2 13.9 2.0 2 0 0 2 2 2 2 S-layer protein PGF-CTERM PF18204.1 gi|20089713|ref|NP_615788.1| - 1.2e-08 34.6 0.9 1.2e-08 34.6 0.9 1.6 2 0 0 2 2 2 1 PGF-CTERM motif Mtf2_C PF14061.6 gi|20089713|ref|NP_615788.1| - 0.019 15.1 0.0 12 6.1 0.0 2.5 2 0 0 2 2 2 0 Polycomb-like MTF2 factor 2 tRNA-synt_1c_C PF03950.18 gi|20089713|ref|NP_615788.1| - 0.024 14.5 2.6 4.3 7.2 0.2 2.8 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), anti-codon binding domain TbpB_C PF17483.2 gi|20089713|ref|NP_615788.1| - 0.035 14.5 0.6 11 6.5 0.0 3.1 4 0 0 4 4 4 0 C-lobe handle domain of Tf-binding protein B tRNA_bind_4 PF18490.1 gi|20089713|ref|NP_615788.1| - 0.14 12.0 0.6 21 4.9 0.1 2.5 2 0 0 2 2 2 0 tRNA-binding domain SspH PF08141.12 gi|20089713|ref|NP_615788.1| - 0.23 11.6 5.2 11 6.3 0.5 2.9 2 0 0 2 2 2 0 Small acid-soluble spore protein H family DUF4247 PF14042.6 gi|20089713|ref|NP_615788.1| - 1.9 9.2 5.8 1.7e+02 2.9 0.2 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF4247) DUF4367 PF14285.6 gi|20089714|ref|NP_615789.1| - 0.00012 22.4 2.2 0.00028 21.3 2.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4367) DUF4096 PF13340.6 gi|20089715|ref|NP_615790.1| - 3.9e-31 107.1 1.1 7.5e-31 106.2 1.1 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20089715|ref|NP_615790.1| - 2.5e-25 89.4 0.2 3.3e-25 89.0 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20089715|ref|NP_615790.1| - 4.9e-14 52.5 0.1 9.5e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|20089715|ref|NP_615790.1| - 0.042 13.9 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain GXGXG PF01493.19 gi|20089716|ref|NP_615791.1| - 1.3e-09 37.9 16.2 6.4e-07 29.1 14.3 3.5 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|20089717|ref|NP_615792.1| - 2.6e-94 317.4 0.0 3e-94 317.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|20089717|ref|NP_615792.1| - 4.2e-05 23.0 0.0 0.00097 18.5 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase family Molybdopterin PF00384.22 gi|20089718|ref|NP_615793.1| - 1.4e-18 67.1 0.0 5.9e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|20089718|ref|NP_615793.1| - 0.021 14.8 0.2 0.06 13.3 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|20089719|ref|NP_615794.1| - 4.5e-14 52.4 0.0 6.2e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DDE_3 PF13358.6 gi|20089720|ref|NP_615795.1| - 8.8e-24 83.9 0.0 1.2e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF1296 PF06972.11 gi|20089720|ref|NP_615795.1| - 0.0038 17.3 0.2 0.0038 17.3 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1296) RHSP PF07999.11 gi|20089720|ref|NP_615795.1| - 0.022 13.6 0.2 0.027 13.3 0.2 1.1 1 0 0 1 1 1 0 Retrotransposon hot spot protein Thioredoxin_8 PF13905.6 gi|20089720|ref|NP_615795.1| - 0.094 13.0 1.0 3.5 8.0 0.1 2.5 2 1 0 2 2 2 0 Thioredoxin-like rve_3 PF13683.6 gi|20089720|ref|NP_615795.1| - 0.14 11.9 0.0 0.43 10.4 0.0 1.8 1 0 0 1 1 1 0 Integrase core domain DUF1670 PF07900.11 gi|20089721|ref|NP_615796.1| - 7.9e-99 329.5 4.1 9.3e-99 329.2 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20089721|ref|NP_615796.1| - 1.9e-05 24.3 0.0 0.17 11.7 0.0 4.0 3 1 1 4 4 4 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20089721|ref|NP_615796.1| - 0.0001 21.9 0.6 3.1 7.6 0.1 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_17 PF12728.7 gi|20089721|ref|NP_615796.1| - 0.00047 20.3 0.1 0.97 9.7 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|20089721|ref|NP_615796.1| - 0.00077 19.3 0.3 0.076 12.9 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|20089721|ref|NP_615796.1| - 0.00081 18.9 0.0 10 5.7 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|20089721|ref|NP_615796.1| - 0.0012 18.8 0.2 0.22 11.5 0.0 3.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20089721|ref|NP_615796.1| - 0.0019 18.1 0.3 0.018 14.9 0.2 2.5 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|20089721|ref|NP_615796.1| - 0.0065 16.5 0.1 8.4 6.5 0.0 3.1 2 1 1 3 3 3 1 Winged helix-turn helix Phage_terminase PF10668.9 gi|20089721|ref|NP_615796.1| - 0.0078 16.2 0.3 2.8 8.0 0.1 2.5 2 0 0 2 2 2 1 Phage terminase small subunit HTH_11 PF08279.12 gi|20089721|ref|NP_615796.1| - 0.011 15.7 0.4 6 6.9 0.1 2.9 3 0 0 3 3 3 0 HTH domain Fe_dep_repress PF01325.19 gi|20089721|ref|NP_615796.1| - 0.02 15.1 0.9 7.4 6.8 0.3 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|20089721|ref|NP_615796.1| - 0.054 13.0 0.7 11 5.7 0.0 3.7 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|20089721|ref|NP_615796.1| - 0.062 12.8 0.3 2.6 7.6 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_Tnp_4 PF13613.6 gi|20089721|ref|NP_615796.1| - 0.13 12.0 0.0 0.38 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1670 PF07900.11 gi|20089722|ref|NP_615797.1| - 6.5e-88 293.8 0.2 8e-88 293.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20089722|ref|NP_615797.1| - 3.6e-06 26.8 0.1 0.00079 19.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|20089722|ref|NP_615797.1| - 0.0011 19.1 0.1 0.18 12.0 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20089722|ref|NP_615797.1| - 0.0012 18.4 0.1 0.0075 15.8 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|20089722|ref|NP_615797.1| - 0.0015 18.3 0.0 6.2 6.8 0.0 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|20089722|ref|NP_615797.1| - 0.0021 18.0 0.6 0.0084 16.0 0.1 2.2 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|20089722|ref|NP_615797.1| - 0.0026 17.7 0.1 0.85 9.7 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|20089722|ref|NP_615797.1| - 0.0094 15.9 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20089722|ref|NP_615797.1| - 0.011 15.6 0.4 1.9 8.5 0.1 3.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|20089722|ref|NP_615797.1| - 0.02 14.6 0.7 0.091 12.5 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20089722|ref|NP_615797.1| - 0.043 13.5 1.5 10 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 TENA_THI-4 PF03070.16 gi|20089722|ref|NP_615797.1| - 0.048 13.5 0.1 1.9 8.2 0.0 2.6 3 0 0 3 3 3 0 TENA/THI-4/PQQC family MarR PF01047.22 gi|20089722|ref|NP_615797.1| - 0.058 13.3 0.2 0.18 11.7 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|20089722|ref|NP_615797.1| - 0.068 13.2 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20089722|ref|NP_615797.1| - 0.082 12.8 0.0 4 7.4 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|20089722|ref|NP_615797.1| - 0.15 11.9 0.1 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_32 PF13565.6 gi|20089723|ref|NP_615798.1| - 1.7e-11 44.6 0.3 7.7e-10 39.3 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.6 gi|20089723|ref|NP_615798.1| - 6.4e-08 32.2 0.0 4.6e-07 29.4 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|20089723|ref|NP_615798.1| - 4.5e-07 29.9 0.0 1.1e-06 28.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089723|ref|NP_615798.1| - 1.2e-05 25.2 0.0 3.1e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|20089723|ref|NP_615798.1| - 2.8e-05 23.7 0.0 6.9e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 PAX PF00292.18 gi|20089723|ref|NP_615798.1| - 3.6e-05 23.7 0.1 0.00021 21.2 0.1 2.0 1 1 1 2 2 2 1 'Paired box' domain GerE PF00196.19 gi|20089723|ref|NP_615798.1| - 0.0034 16.9 1.8 0.0048 16.4 0.0 2.1 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|20089723|ref|NP_615798.1| - 0.0034 16.9 0.2 0.041 13.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 gi|20089723|ref|NP_615798.1| - 0.0055 16.1 0.1 0.011 15.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|20089723|ref|NP_615798.1| - 0.011 15.6 0.1 0.074 13.0 0.0 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|20089723|ref|NP_615798.1| - 0.014 15.2 0.0 0.034 14.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2089 PF09862.9 gi|20089723|ref|NP_615798.1| - 0.017 15.1 0.0 0.035 14.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_30 PF13556.6 gi|20089723|ref|NP_615798.1| - 0.022 14.6 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|20089723|ref|NP_615798.1| - 0.059 12.9 1.2 0.73 9.4 0.1 2.6 3 0 0 3 3 3 0 Sigma-70, region 4 Trp_repressor PF01371.19 gi|20089723|ref|NP_615798.1| - 0.15 12.2 0.3 0.37 11.0 0.1 1.7 2 0 0 2 2 2 0 Trp repressor protein SBP_bac_5 PF00496.22 gi|20089724|ref|NP_615799.1| - 1.3e-80 271.2 0.0 1.6e-80 270.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_25 PF13649.6 gi|20089725|ref|NP_615800.1| - 1.9e-14 54.1 0.0 3.5e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089725|ref|NP_615800.1| - 3.1e-11 43.8 0.0 5.6e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089725|ref|NP_615800.1| - 1.1e-09 38.3 0.0 2.5e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089725|ref|NP_615800.1| - 1.8e-07 31.1 0.0 4.2e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089725|ref|NP_615800.1| - 1.9e-07 31.7 0.0 4.6e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20089725|ref|NP_615800.1| - 3.1e-07 30.0 0.0 5.5e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|20089725|ref|NP_615800.1| - 4.9e-06 26.3 0.0 6.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 gi|20089725|ref|NP_615800.1| - 1.1e-05 25.0 0.0 1.7e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|20089725|ref|NP_615800.1| - 2.6e-05 23.4 0.0 3.4e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|20089725|ref|NP_615800.1| - 7.2e-05 22.3 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|20089725|ref|NP_615800.1| - 0.00037 19.9 0.0 0.00065 19.1 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|20089725|ref|NP_615800.1| - 0.0004 20.3 0.0 0.00063 19.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20089725|ref|NP_615800.1| - 0.00046 19.6 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|20089725|ref|NP_615800.1| - 0.0039 16.3 0.0 0.007 15.5 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase FtsJ PF01728.19 gi|20089725|ref|NP_615800.1| - 0.016 15.3 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase MetW PF07021.12 gi|20089725|ref|NP_615800.1| - 0.022 14.3 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|20089725|ref|NP_615800.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain BPD_transp_1 PF00528.22 gi|20089726|ref|NP_615801.1| - 3.6e-39 134.4 10.3 3.6e-39 134.4 10.3 1.6 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|20089727|ref|NP_615802.1| - 2.9e-24 85.8 12.1 2.9e-24 85.8 12.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20089727|ref|NP_615802.1| - 0.00075 19.4 0.3 0.00075 19.4 0.3 4.1 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|20089728|ref|NP_615803.1| - 4.3e-55 186.0 0.0 4.8e-28 98.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|20089728|ref|NP_615803.1| - 1.7e-17 63.7 0.0 3.7e-15 56.2 0.0 2.7 3 0 0 3 3 2 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|20089728|ref|NP_615803.1| - 4.5e-15 55.7 0.2 2.4e-07 30.4 0.0 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|20089728|ref|NP_615803.1| - 6.3e-12 45.9 2.5 3.5e-05 24.1 0.1 3.8 2 2 0 2 2 2 2 AAA domain AAA_21 PF13304.6 gi|20089728|ref|NP_615803.1| - 1.5e-10 41.4 3.3 0.00035 20.5 0.0 4.1 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20089728|ref|NP_615803.1| - 6.5e-08 32.2 0.1 0.003 17.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA PF00004.29 gi|20089728|ref|NP_615803.1| - 1.5e-06 28.7 0.6 0.019 15.4 0.0 3.9 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|20089728|ref|NP_615803.1| - 5.1e-06 27.0 0.9 0.015 15.6 0.0 2.6 3 0 0 3 3 2 2 AAA ATPase domain AAA_25 PF13481.6 gi|20089728|ref|NP_615803.1| - 5.8e-06 26.0 0.7 0.024 14.2 0.1 3.6 3 1 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|20089728|ref|NP_615803.1| - 9.5e-06 25.6 0.8 0.18 11.7 0.0 3.3 4 0 0 4 4 3 2 NACHT domain RsgA_GTPase PF03193.16 gi|20089728|ref|NP_615803.1| - 1.1e-05 25.5 0.0 0.016 15.1 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase TrwB_AAD_bind PF10412.9 gi|20089728|ref|NP_615803.1| - 2.1e-05 23.6 0.0 0.0052 15.7 0.0 2.4 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 gi|20089728|ref|NP_615803.1| - 4.4e-05 23.0 0.6 1.5 8.2 0.0 4.0 4 0 0 4 4 4 1 Bacterial TniB protein IstB_IS21 PF01695.17 gi|20089728|ref|NP_615803.1| - 7.2e-05 22.6 0.7 0.6 9.8 0.0 3.8 4 0 0 4 4 4 1 IstB-like ATP binding protein NB-ARC PF00931.22 gi|20089728|ref|NP_615803.1| - 0.00015 21.1 0.6 0.42 9.8 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_23 PF13476.6 gi|20089728|ref|NP_615803.1| - 0.00017 22.2 0.1 0.69 10.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|20089728|ref|NP_615803.1| - 0.00018 21.5 0.8 0.31 11.0 0.0 3.5 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|20089728|ref|NP_615803.1| - 0.00023 20.6 3.0 2.9 7.2 0.1 3.2 3 0 0 3 3 3 1 KaiC Mg_chelatase PF01078.21 gi|20089728|ref|NP_615803.1| - 0.00032 20.1 0.9 1.2 8.4 0.1 3.2 3 1 0 3 3 3 2 Magnesium chelatase, subunit ChlI DUF87 PF01935.17 gi|20089728|ref|NP_615803.1| - 0.00034 20.8 0.4 0.032 14.3 0.0 2.5 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_33 PF13671.6 gi|20089728|ref|NP_615803.1| - 0.00049 20.3 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain APS_kinase PF01583.20 gi|20089728|ref|NP_615803.1| - 0.0011 18.9 0.3 0.2 11.6 0.0 2.4 2 0 0 2 2 2 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|20089728|ref|NP_615803.1| - 0.0011 18.3 0.2 0.044 13.0 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_24 PF13479.6 gi|20089728|ref|NP_615803.1| - 0.0013 18.5 0.1 1 9.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|20089728|ref|NP_615803.1| - 0.0013 18.5 0.1 0.25 11.1 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|20089728|ref|NP_615803.1| - 0.0016 18.4 0.0 0.29 11.0 0.0 2.8 3 1 0 3 3 2 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|20089728|ref|NP_615803.1| - 0.0027 18.3 0.1 1.8 9.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20089728|ref|NP_615803.1| - 0.0028 17.1 0.0 2.4 7.6 0.1 2.4 2 0 0 2 2 2 1 PhoH-like protein CbiA PF01656.23 gi|20089728|ref|NP_615803.1| - 0.0037 17.3 0.5 0.77 9.8 0.3 2.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|20089728|ref|NP_615803.1| - 0.0043 16.8 0.4 1.4 8.6 0.0 3.0 4 0 0 4 4 3 1 AAA domain AAA_7 PF12775.7 gi|20089728|ref|NP_615803.1| - 0.0044 16.6 0.0 3.7 7.0 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region DEAD PF00270.29 gi|20089728|ref|NP_615803.1| - 0.0044 16.8 0.4 3.2 7.5 0.0 3.4 3 1 0 3 3 3 1 DEAD/DEAH box helicase T2SSE PF00437.20 gi|20089728|ref|NP_615803.1| - 0.0066 15.5 0.0 0.49 9.4 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|20089728|ref|NP_615803.1| - 0.0073 16.7 0.1 0.97 9.9 0.0 2.8 2 0 0 2 2 2 1 RNA helicase TsaE PF02367.17 gi|20089728|ref|NP_615803.1| - 0.0084 16.1 0.1 1.1 9.2 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLP1_P PF16575.5 gi|20089728|ref|NP_615803.1| - 0.01 15.7 0.5 0.019 14.8 0.0 1.7 2 0 0 2 2 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MobB PF03205.14 gi|20089728|ref|NP_615803.1| - 0.016 15.1 0.4 1.5 8.7 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TIP49 PF06068.13 gi|20089728|ref|NP_615803.1| - 0.017 14.4 0.1 0.53 9.4 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain NTPase_1 PF03266.15 gi|20089728|ref|NP_615803.1| - 0.018 15.0 1.3 7.9 6.4 0.1 2.9 3 0 0 3 3 3 0 NTPase Sigma54_activat PF00158.26 gi|20089728|ref|NP_615803.1| - 0.036 13.8 0.3 6 6.5 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain SRP54 PF00448.22 gi|20089728|ref|NP_615803.1| - 0.059 13.0 0.5 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|20089728|ref|NP_615803.1| - 0.067 12.9 0.2 3.6 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RecA PF00154.21 gi|20089728|ref|NP_615803.1| - 0.097 12.1 0.4 4.4 6.7 0.2 2.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein MMR_HSR1 PF01926.23 gi|20089728|ref|NP_615803.1| - 0.11 12.6 1.1 1.7 8.7 0.1 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|20089728|ref|NP_615803.1| - 0.11 12.8 1.2 28 5.0 0.2 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Bac_A_amyl_C PF18612.1 gi|20089728|ref|NP_615803.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial Alpha amylase C-terminal domain AAA_14 PF13173.6 gi|20089728|ref|NP_615803.1| - 0.14 12.2 0.1 41 4.2 0.0 3.5 4 0 0 4 4 4 0 AAA domain AAA_19 PF13245.6 gi|20089728|ref|NP_615803.1| - 0.19 12.1 0.3 11 6.4 0.1 2.7 3 0 0 3 3 2 0 AAA domain ResIII PF04851.15 gi|20089728|ref|NP_615803.1| - 0.2 11.6 0.0 8.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Pox_A32 PF04665.12 gi|20089728|ref|NP_615803.1| - 0.21 11.0 0.4 17 4.7 0.2 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein Roc PF08477.13 gi|20089728|ref|NP_615803.1| - 0.21 11.8 0.4 19 5.5 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ABC_ATPase PF09818.9 gi|20089728|ref|NP_615803.1| - 0.33 9.7 5.6 9.3 4.9 0.0 4.1 4 1 0 4 4 4 0 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|20089729|ref|NP_615804.1| - 1.2e-32 113.3 0.0 2e-32 112.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089729|ref|NP_615804.1| - 1.5e-10 41.4 0.4 1.5e-05 25.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|20089729|ref|NP_615804.1| - 2.9e-06 27.9 0.0 5.6e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|20089729|ref|NP_615804.1| - 7.4e-06 26.6 0.0 1e-05 26.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089729|ref|NP_615804.1| - 4.3e-05 23.2 0.1 8.3e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|20089729|ref|NP_615804.1| - 0.00015 21.6 0.0 0.57 9.8 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_27 PF13514.6 gi|20089729|ref|NP_615804.1| - 0.0087 15.7 0.0 0.0087 15.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|20089729|ref|NP_615804.1| - 0.014 14.8 0.0 3.3 7.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|20089729|ref|NP_615804.1| - 0.055 13.9 0.0 0.3 11.5 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|20089729|ref|NP_615804.1| - 0.071 12.7 0.0 0.74 9.4 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.14 gi|20089729|ref|NP_615804.1| - 0.087 12.7 0.1 12 5.7 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|20089729|ref|NP_615804.1| - 0.099 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|20089729|ref|NP_615804.1| - 0.12 12.0 0.1 1 9.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|20089729|ref|NP_615804.1| - 0.13 12.6 0.0 0.6 10.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|20089730|ref|NP_615805.1| - 3.4e-36 124.6 25.6 3.4e-36 124.6 25.6 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20089730|ref|NP_615805.1| - 4.8e-11 42.4 34.7 6.3e-11 42.0 34.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20089730|ref|NP_615805.1| - 2.3e-06 27.1 20.4 3.2e-06 26.6 20.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein URO-D PF01208.17 gi|20089731|ref|NP_615806.1| - 3.9e-70 236.7 0.0 4.5e-70 236.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RACo_C_ter PF14574.6 gi|20089733|ref|NP_615808.1| - 1.5e-70 237.2 4.6 4.9e-70 235.5 4.6 1.7 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|20089733|ref|NP_615808.1| - 3.9e-12 46.1 0.0 1e-11 44.8 0.0 1.7 1 1 0 1 1 1 1 RACo middle region Fer4_21 PF14697.6 gi|20089733|ref|NP_615808.1| - 1.3e-06 28.4 12.6 2.7e-06 27.4 10.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20089733|ref|NP_615808.1| - 9.2e-06 25.3 11.3 0.017 14.9 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20089733|ref|NP_615808.1| - 1.6e-05 25.7 10.9 0.024 15.6 0.9 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20089733|ref|NP_615808.1| - 2.1e-05 24.6 13.6 4.7e-05 23.5 13.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089733|ref|NP_615808.1| - 3.5e-05 23.7 12.9 0.018 15.1 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089733|ref|NP_615808.1| - 0.0001 22.8 12.4 0.0039 17.7 13.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089733|ref|NP_615808.1| - 0.00093 19.3 14.4 0.046 13.8 16.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20089733|ref|NP_615808.1| - 0.0016 19.0 7.1 0.023 15.2 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089733|ref|NP_615808.1| - 0.0052 17.6 14.7 0.52 11.4 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20089733|ref|NP_615808.1| - 0.49 10.9 15.3 0.15 12.5 2.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089733|ref|NP_615808.1| - 0.66 10.6 8.6 1.5 9.5 8.6 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|20089733|ref|NP_615808.1| - 0.87 9.8 16.5 3.6 7.9 3.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089733|ref|NP_615808.1| - 3.2 8.5 13.4 0.82 10.3 2.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain PKD PF00801.20 gi|20089734|ref|NP_615809.1| - 1.1e-120 393.7 106.3 1e-14 54.1 3.6 11.4 10 0 0 10 10 10 10 PKD domain DUF3344 PF11824.8 gi|20089734|ref|NP_615809.1| - 2.9e-74 250.2 14.2 2.9e-74 250.2 14.2 5.7 4 1 0 5 5 3 1 Protein of unknown function (DUF3344) PQQ_3 PF13570.6 gi|20089734|ref|NP_615809.1| - 1.2e-47 159.2 58.7 9.2e-09 35.5 0.2 12.5 14 0 0 14 14 11 8 PQQ-like domain NosD PF05048.13 gi|20089734|ref|NP_615809.1| - 5e-43 147.1 22.9 2e-42 145.1 22.9 2.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) PQQ PF01011.21 gi|20089734|ref|NP_615809.1| - 5.4e-37 124.0 32.8 3.7e-07 29.7 0.3 9.2 8 0 0 8 8 8 7 PQQ enzyme repeat FG-GAP PF01839.23 gi|20089734|ref|NP_615809.1| - 1e-18 67.1 57.1 5.6e-05 23.2 1.6 9.2 8 0 0 8 8 8 5 FG-GAP repeat VCBS PF13517.6 gi|20089734|ref|NP_615809.1| - 4.3e-16 59.2 31.0 1.4e-07 31.9 5.7 12.9 8 4 3 12 12 11 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Beta_helix PF13229.6 gi|20089734|ref|NP_615809.1| - 1.2e-13 51.2 21.8 7.3e-13 48.7 21.8 2.4 1 0 0 1 1 1 1 Right handed beta helix region PKD_3 PF16820.5 gi|20089734|ref|NP_615809.1| - 9.7e-06 25.3 33.3 0.19 11.5 0.4 9.1 10 0 0 10 10 10 4 PKD-like domain MG2 PF01835.19 gi|20089734|ref|NP_615809.1| - 2.8e-05 24.5 22.9 1 9.9 0.1 9.2 8 1 1 9 9 9 1 MG2 domain Itfg2 PF15907.5 gi|20089734|ref|NP_615809.1| - 0.03 13.4 0.4 18 4.2 0.0 4.3 5 0 0 5 5 5 0 Integrin-alpha FG-GAP repeat-containing protein 2 EF-hand_6 PF13405.6 gi|20089734|ref|NP_615809.1| - 0.46 10.5 12.2 0.1 12.6 0.3 5.3 5 0 0 5 5 2 0 EF-hand domain EF-hand_8 PF13833.6 gi|20089734|ref|NP_615809.1| - 3.8 7.4 6.6 1.8 8.5 2.3 2.8 3 0 0 3 3 3 0 EF-hand domain pair DUF5122 PF17164.4 gi|20089734|ref|NP_615809.1| - 6.9 7.1 18.6 6.9 7.1 0.2 7.1 6 0 0 6 6 6 0 Domain of unknown function (DUF5122) beta-propeller DUF3344 PF11824.8 gi|20089735|ref|NP_615810.1| - 4.2e-120 400.6 37.6 3.8e-78 262.9 16.0 7.1 6 2 2 8 8 8 2 Protein of unknown function (DUF3344) PKD PF00801.20 gi|20089735|ref|NP_615810.1| - 3.8e-104 340.6 105.1 2.4e-14 52.9 3.0 11.6 11 0 0 11 11 11 9 PKD domain SBBP PF06739.11 gi|20089735|ref|NP_615810.1| - 1.5e-68 226.5 92.6 1e-10 41.4 5.0 8.4 7 0 0 7 7 7 7 Beta-propeller repeat CARDB PF07705.11 gi|20089735|ref|NP_615810.1| - 1.5e-20 73.3 10.7 1.5e-20 73.3 10.7 7.2 6 1 1 7 7 7 1 CARDB Big_2 PF02368.18 gi|20089735|ref|NP_615810.1| - 1.3e-09 37.8 8.1 1.3e-09 37.8 8.1 5.7 7 0 0 7 7 7 1 Bacterial Ig-like domain (group 2) PKD_3 PF16820.5 gi|20089735|ref|NP_615810.1| - 8.4e-07 28.6 46.2 0.29 10.9 0.3 10.7 11 0 0 11 11 11 6 PKD-like domain MG2 PF01835.19 gi|20089735|ref|NP_615810.1| - 3.9e-05 24.0 17.7 5.3 7.6 0.1 8.5 7 1 0 7 7 7 2 MG2 domain EF-hand_6 PF13405.6 gi|20089735|ref|NP_615810.1| - 0.014 15.2 5.1 0.11 12.4 0.3 4.1 3 0 0 3 3 3 0 EF-hand domain EF-hand_1 PF00036.32 gi|20089735|ref|NP_615810.1| - 0.17 11.5 8.7 0.031 13.8 1.2 3.5 3 0 0 3 3 3 0 EF hand Dockerin_1 PF00404.18 gi|20089735|ref|NP_615810.1| - 2.6 8.3 11.7 2.3 8.5 0.1 4.9 5 0 0 5 5 5 0 Dockerin type I domain ABC2_membrane_4 PF12730.7 gi|20089736|ref|NP_615811.1| - 9.3e-23 81.1 18.6 9.3e-23 81.1 18.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20089736|ref|NP_615811.1| - 2.1e-11 43.6 21.7 3.5e-11 42.9 21.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20089736|ref|NP_615811.1| - 2.3e-06 27.3 19.6 2.3e-06 27.3 19.6 2.2 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|20089737|ref|NP_615812.1| - 1.8e-28 99.8 0.0 3e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089737|ref|NP_615812.1| - 4.9e-08 33.1 1.0 5.1e-07 29.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20089737|ref|NP_615812.1| - 0.09 13.0 0.6 0.57 10.5 0.3 2.4 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|20089737|ref|NP_615812.1| - 0.13 12.7 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain PIN_3 PF13470.6 gi|20089737|ref|NP_615812.1| - 0.16 12.8 0.0 0.41 11.4 0.0 1.8 1 1 1 2 2 2 0 PIN domain Acetyltransf_1 PF00583.25 gi|20089738|ref|NP_615813.1| - 3.2e-15 56.4 0.2 4.2e-15 56.0 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20089738|ref|NP_615813.1| - 8.7e-14 51.6 0.0 1.1e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20089738|ref|NP_615813.1| - 2.9e-12 46.8 0.0 5.5e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20089738|ref|NP_615813.1| - 2.5e-06 27.6 0.0 1.8e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20089738|ref|NP_615813.1| - 0.00065 19.6 0.0 0.0023 17.9 0.0 1.8 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|20089738|ref|NP_615813.1| - 0.00068 19.8 0.0 0.00083 19.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20089738|ref|NP_615813.1| - 0.002 18.2 0.0 0.0044 17.1 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|20089738|ref|NP_615813.1| - 0.0084 16.8 0.0 0.011 16.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20089738|ref|NP_615813.1| - 0.0087 16.2 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain URO-D PF01208.17 gi|20089739|ref|NP_615814.1| - 7.8e-77 258.8 0.0 8.8e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) cobW PF02492.19 gi|20089740|ref|NP_615815.1| - 1.5e-36 125.6 0.0 2.9e-36 124.7 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|20089740|ref|NP_615815.1| - 0.0012 18.5 0.2 0.0024 17.6 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|20089740|ref|NP_615815.1| - 0.0061 16.5 1.5 0.012 15.5 0.1 2.2 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|20089740|ref|NP_615815.1| - 0.0083 15.1 0.4 0.062 12.3 0.3 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB TrwB_AAD_bind PF10412.9 gi|20089740|ref|NP_615815.1| - 0.013 14.4 0.6 0.021 13.7 0.6 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Viral_helicase1 PF01443.18 gi|20089740|ref|NP_615815.1| - 0.025 14.3 1.2 0.098 12.4 0.1 2.3 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|20089740|ref|NP_615815.1| - 0.032 13.5 0.1 0.06 12.6 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|20089740|ref|NP_615815.1| - 0.044 13.5 0.4 0.092 12.5 0.2 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|20089740|ref|NP_615815.1| - 0.047 12.7 1.0 0.064 12.3 0.2 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|20089740|ref|NP_615815.1| - 0.055 13.8 0.4 0.16 12.3 0.4 1.8 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|20089740|ref|NP_615815.1| - 0.06 13.6 0.4 0.13 12.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|20089740|ref|NP_615815.1| - 0.073 12.8 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|20089740|ref|NP_615815.1| - 0.093 12.3 1.0 3.7 7.1 0.1 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain TsaE PF02367.17 gi|20089740|ref|NP_615815.1| - 0.12 12.4 0.3 0.26 11.3 0.3 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CbiA PF01656.23 gi|20089740|ref|NP_615815.1| - 0.37 10.9 1.5 0.95 9.5 1.5 2.2 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Cpn60_TCP1 PF00118.24 gi|20089741|ref|NP_615816.1| - 1.8e-130 435.9 8.1 2e-130 435.7 8.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Hydantoinase_A PF01968.18 gi|20089742|ref|NP_615817.1| - 7.9e-33 114.0 3.4 7.9e-32 110.7 0.4 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20089742|ref|NP_615817.1| - 1.5e-29 103.0 6.4 2.3e-26 92.6 0.6 3.7 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20089742|ref|NP_615817.1| - 3.6e-06 25.9 2.3 0.004 15.8 0.2 2.3 2 0 0 2 2 2 2 MutL protein DprA_WH PF17782.1 gi|20089742|ref|NP_615817.1| - 0.003 17.6 0.1 0.0085 16.2 0.0 1.9 2 0 0 2 2 2 1 DprA winged helix domain StbA PF06406.11 gi|20089742|ref|NP_615817.1| - 0.03 13.6 0.1 0.062 12.5 0.1 1.5 1 0 0 1 1 1 0 StbA protein Sigma70_r4 PF04545.16 gi|20089742|ref|NP_615817.1| - 0.16 11.5 0.2 0.46 10.0 0.2 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 URO-D PF01208.17 gi|20089743|ref|NP_615818.1| - 5.6e-58 196.7 0.0 8.8e-58 196.1 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|20089743|ref|NP_615818.1| - 2.9e-23 82.2 0.2 7.2e-23 80.9 0.2 1.7 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20089743|ref|NP_615818.1| - 4.5e-18 65.5 0.3 1.2e-17 64.1 0.3 1.8 1 0 0 1 1 1 1 B12 binding domain SHIPPO-rpt PF07004.12 gi|20089744|ref|NP_615819.1| - 0.037 15.0 0.1 0.077 13.9 0.1 1.6 1 0 0 1 1 1 0 Sperm-tail PG-rich repeat DUF1724 PF08350.10 gi|20089746|ref|NP_615821.1| - 1.8e-22 79.2 0.8 2.9e-22 78.5 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20089746|ref|NP_615821.1| - 5.1e-06 26.2 0.3 9.2e-06 25.4 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20089746|ref|NP_615821.1| - 0.0027 17.6 0.9 0.0058 16.5 0.9 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|20089746|ref|NP_615821.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|20089746|ref|NP_615821.1| - 0.032 14.2 0.1 0.096 12.6 0.1 1.8 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|20089746|ref|NP_615821.1| - 0.032 14.1 0.0 0.09 12.7 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|20089746|ref|NP_615821.1| - 0.05 13.8 0.1 0.15 12.3 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|20089746|ref|NP_615821.1| - 0.087 12.9 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GAF_2 PF13185.6 gi|20089747|ref|NP_615822.1| - 7.4e-45 152.6 0.0 6e-26 91.4 0.0 2.3 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|20089747|ref|NP_615822.1| - 7.3e-23 81.2 0.6 1.9e-22 79.9 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|20089747|ref|NP_615822.1| - 2.4e-13 50.9 0.0 5.5e-07 30.3 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|20089747|ref|NP_615822.1| - 6.9e-09 35.9 0.1 1.6e-07 31.5 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|20089747|ref|NP_615822.1| - 2.4e-08 34.2 0.0 4.3e-05 23.7 0.0 3.4 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|20089747|ref|NP_615822.1| - 8.2e-08 32.4 0.1 3.9e-06 27.1 0.0 2.8 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|20089747|ref|NP_615822.1| - 5.8e-05 23.4 0.0 0.18 12.2 0.0 3.1 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.7 gi|20089747|ref|NP_615822.1| - 0.0012 18.9 0.0 0.0047 16.9 0.0 2.1 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|20089747|ref|NP_615822.1| - 0.0022 18.0 4.4 0.018 15.1 0.1 3.9 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|20089747|ref|NP_615822.1| - 0.029 14.4 0.1 0.13 12.3 0.0 2.2 2 0 0 2 2 2 0 PAS fold HPTransfase PF10090.9 gi|20089747|ref|NP_615822.1| - 0.12 12.1 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain PAS_3 PF08447.12 gi|20089748|ref|NP_615823.1| - 5.4e-29 100.3 2.3 4.6e-20 71.7 0.2 2.8 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|20089748|ref|NP_615823.1| - 2.4e-07 31.0 0.0 3.1e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|20089748|ref|NP_615823.1| - 3.9e-05 23.6 0.1 0.00095 19.1 0.1 2.3 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|20089748|ref|NP_615823.1| - 0.00016 21.9 0.1 0.031 14.5 0.1 2.2 2 0 0 2 2 2 2 PAS domain DUF2075 PF09848.9 gi|20089748|ref|NP_615823.1| - 0.018 14.3 0.1 1.1 8.4 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoU PF01895.19 gi|20089750|ref|NP_615825.1| - 5.5e-22 78.0 10.8 2.8e-20 72.6 2.0 3.4 3 1 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|20089750|ref|NP_615825.1| - 3.6e-08 33.1 0.0 8.4e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin KORA PF16509.5 gi|20089750|ref|NP_615825.1| - 0.045 14.0 0.7 43 4.5 0.0 3.3 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HAMP PF00672.25 gi|20089750|ref|NP_615825.1| - 0.11 12.9 0.0 5.2 7.5 0.0 2.6 2 0 0 2 2 2 0 HAMP domain ABC2_membrane PF01061.24 gi|20089751|ref|NP_615826.1| - 1.1e-32 113.1 20.3 1.5e-32 112.7 20.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20089751|ref|NP_615826.1| - 1.6e-12 47.2 24.7 2e-12 46.9 24.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|20089752|ref|NP_615827.1| - 1.2e-29 103.5 0.0 2e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089752|ref|NP_615827.1| - 4e-09 36.7 0.3 1.1e-05 25.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20089752|ref|NP_615827.1| - 0.00027 21.5 0.0 0.00037 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089752|ref|NP_615827.1| - 0.0022 17.7 0.4 0.005 16.6 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain KdpD PF02702.17 gi|20089752|ref|NP_615827.1| - 0.0086 15.6 0.0 0.017 14.6 0.0 1.5 1 1 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_15 PF13175.6 gi|20089752|ref|NP_615827.1| - 0.013 15.2 0.1 0.047 13.4 0.0 1.9 2 1 1 3 3 3 0 AAA ATPase domain SMC_N PF02463.19 gi|20089752|ref|NP_615827.1| - 0.029 13.8 0.0 0.31 10.5 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain MukB PF04310.12 gi|20089752|ref|NP_615827.1| - 0.044 13.6 0.2 0.11 12.3 0.2 1.8 1 1 0 1 1 1 0 MukB N-terminal Thymidylate_kin PF02223.17 gi|20089752|ref|NP_615827.1| - 0.055 13.1 0.1 0.31 10.7 0.1 1.9 1 1 0 1 1 1 0 Thymidylate kinase AAA_27 PF13514.6 gi|20089752|ref|NP_615827.1| - 0.056 13.0 0.0 0.15 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|20089752|ref|NP_615827.1| - 0.083 12.5 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|20089752|ref|NP_615827.1| - 0.11 12.9 0.1 0.91 9.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiQ PF02361.16 gi|20089753|ref|NP_615828.1| - 3.9e-23 82.2 10.6 3.9e-23 82.2 10.6 1.5 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|20089754|ref|NP_615829.1| - 4.2e-56 189.3 0.0 5e-27 95.1 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|20089754|ref|NP_615829.1| - 2.3e-11 43.5 1.5 4.3e-06 26.3 0.0 3.0 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20089754|ref|NP_615829.1| - 6.6e-11 41.8 0.3 0.00047 19.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|20089754|ref|NP_615829.1| - 9.5e-11 42.0 5.5 0.006 16.4 0.3 4.2 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 gi|20089754|ref|NP_615829.1| - 1.9e-08 34.1 0.2 0.017 14.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|20089754|ref|NP_615829.1| - 2.3e-08 34.6 0.0 0.00018 21.9 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|20089754|ref|NP_615829.1| - 1.4e-07 31.8 1.0 0.018 15.3 1.2 3.1 2 1 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|20089754|ref|NP_615829.1| - 4.3e-07 30.6 2.9 0.0022 18.5 0.0 3.2 2 1 1 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|20089754|ref|NP_615829.1| - 6.1e-07 30.0 0.2 0.077 13.5 0.0 3.1 3 0 0 3 3 2 2 AAA domain T2SSE PF00437.20 gi|20089754|ref|NP_615829.1| - 1.2e-06 27.8 0.8 0.0012 18.0 0.0 2.5 3 0 0 3 3 2 2 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|20089754|ref|NP_615829.1| - 3.9e-06 26.9 0.6 0.015 15.2 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_28 PF13521.6 gi|20089754|ref|NP_615829.1| - 1.6e-05 25.3 2.6 0.054 13.7 0.1 2.8 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|20089754|ref|NP_615829.1| - 3.9e-05 23.6 0.1 0.36 10.7 0.1 2.5 2 0 0 2 2 2 2 NTPase NACHT PF05729.12 gi|20089754|ref|NP_615829.1| - 4.1e-05 23.5 0.3 0.36 10.7 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_30 PF13604.6 gi|20089754|ref|NP_615829.1| - 6.9e-05 22.7 0.0 0.051 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|20089754|ref|NP_615829.1| - 7e-05 22.7 0.1 0.039 13.7 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|20089754|ref|NP_615829.1| - 7e-05 22.8 0.2 0.0022 17.9 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|20089754|ref|NP_615829.1| - 7.4e-05 22.2 0.2 0.0089 15.4 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|20089754|ref|NP_615829.1| - 0.00013 22.1 0.0 1.2 9.5 0.0 3.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|20089754|ref|NP_615829.1| - 0.00021 21.7 0.0 0.24 11.8 0.0 3.1 3 0 0 3 3 2 1 RNA helicase AAA_7 PF12775.7 gi|20089754|ref|NP_615829.1| - 0.00028 20.5 0.9 0.1 12.1 0.1 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|20089754|ref|NP_615829.1| - 0.00032 20.7 0.1 0.12 12.2 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|20089754|ref|NP_615829.1| - 0.00043 20.3 0.3 0.42 10.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|20089754|ref|NP_615829.1| - 0.00047 20.2 1.1 0.22 11.5 0.1 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20089754|ref|NP_615829.1| - 0.00048 20.6 0.5 0.14 12.6 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|20089754|ref|NP_615829.1| - 0.00059 19.9 0.6 0.0019 18.2 0.0 2.1 2 0 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|20089754|ref|NP_615829.1| - 0.00095 19.2 0.4 1.8 8.7 0.0 2.8 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|20089754|ref|NP_615829.1| - 0.0012 18.6 1.2 0.65 9.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain DAP3 PF10236.9 gi|20089754|ref|NP_615829.1| - 0.0012 18.0 0.9 0.3 10.2 0.1 2.3 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 FtsK_SpoIIIE PF01580.18 gi|20089754|ref|NP_615829.1| - 0.0013 18.1 0.8 0.18 11.1 0.1 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_ATPase PF09818.9 gi|20089754|ref|NP_615829.1| - 0.0025 16.7 3.7 1.5 7.5 0.0 3.2 3 0 0 3 3 3 1 Predicted ATPase of the ABC class cobW PF02492.19 gi|20089754|ref|NP_615829.1| - 0.0034 17.0 1.3 2.2 7.9 0.2 2.5 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|20089754|ref|NP_615829.1| - 0.0038 16.5 0.3 2 7.6 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin NB-ARC PF00931.22 gi|20089754|ref|NP_615829.1| - 0.004 16.4 0.1 0.81 8.8 0.0 2.6 2 0 0 2 2 2 1 NB-ARC domain AAA_33 PF13671.6 gi|20089754|ref|NP_615829.1| - 0.0046 17.1 1.9 2.8 8.1 0.2 2.6 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|20089754|ref|NP_615829.1| - 0.0069 16.0 0.5 0.24 11.0 0.0 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|20089754|ref|NP_615829.1| - 0.0078 15.2 0.3 0.46 9.4 0.0 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB G-alpha PF00503.20 gi|20089754|ref|NP_615829.1| - 0.01 15.0 0.3 4.3 6.4 0.1 2.4 2 0 0 2 2 2 0 G-protein alpha subunit IstB_IS21 PF01695.17 gi|20089754|ref|NP_615829.1| - 0.011 15.5 0.2 2.9 7.6 0.1 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.13 gi|20089754|ref|NP_615829.1| - 0.012 14.8 0.1 0.49 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) PduV-EutP PF10662.9 gi|20089754|ref|NP_615829.1| - 0.017 14.8 0.5 1.6 8.5 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation TniB PF05621.11 gi|20089754|ref|NP_615829.1| - 0.019 14.4 5.7 0.12 11.8 0.2 3.4 4 0 0 4 4 3 0 Bacterial TniB protein APS_kinase PF01583.20 gi|20089754|ref|NP_615829.1| - 0.021 14.7 0.2 4.8 7.1 0.0 2.6 2 0 0 2 2 2 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 gi|20089754|ref|NP_615829.1| - 0.03 14.0 1.3 5.5 6.7 0.3 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Adeno_IVa2 PF02456.15 gi|20089754|ref|NP_615829.1| - 0.038 12.8 0.1 0.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein TsaE PF02367.17 gi|20089754|ref|NP_615829.1| - 0.044 13.8 0.8 1.3 9.0 0.1 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PC4 PF02229.16 gi|20089754|ref|NP_615829.1| - 0.063 12.9 2.2 0.16 11.6 0.4 2.3 2 0 0 2 2 2 0 Transcriptional Coactivator p15 (PC4) TrwB_AAD_bind PF10412.9 gi|20089754|ref|NP_615829.1| - 0.077 11.9 1.1 1.7 7.5 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.14 gi|20089754|ref|NP_615829.1| - 0.08 12.1 0.4 2 7.5 0.1 2.2 2 0 0 2 2 2 0 PIF1-like helicase ATP_bind_1 PF03029.17 gi|20089754|ref|NP_615829.1| - 0.089 12.6 1.9 5.2 6.8 0.1 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|20089754|ref|NP_615829.1| - 0.09 13.1 0.8 12 6.2 0.1 2.6 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|20089754|ref|NP_615829.1| - 0.099 10.1 0.2 0.16 9.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) dNK PF01712.19 gi|20089754|ref|NP_615829.1| - 0.13 12.1 0.1 7.5 6.4 0.1 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase DUF87 PF01935.17 gi|20089754|ref|NP_615829.1| - 0.15 12.1 1.4 4 7.5 0.1 2.8 2 0 0 2 2 2 0 Helicase HerA, central domain Pox_A32 PF04665.12 gi|20089754|ref|NP_615829.1| - 0.16 11.4 0.5 0.97 8.8 0.1 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_27 PF13514.6 gi|20089754|ref|NP_615829.1| - 0.18 11.4 0.3 18 4.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|20089754|ref|NP_615829.1| - 0.28 10.0 1.0 5.7 5.6 0.1 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ATPase PF06745.13 gi|20089754|ref|NP_615829.1| - 1.4 8.2 7.1 3.5 6.9 0.2 3.3 4 1 0 4 4 3 0 KaiC CobN-Mg_chel PF02514.16 gi|20089756|ref|NP_615831.1| - 0 1250.8 0.0 0 1250.6 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF3236 PF11576.8 gi|20089756|ref|NP_615831.1| - 0.066 12.9 0.2 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) PQQ PF01011.21 gi|20089757|ref|NP_615832.1| - 1.8e-18 65.5 3.5 0.022 14.7 0.0 6.1 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|20089757|ref|NP_615832.1| - 1.3e-12 47.9 0.0 2.6e-08 33.8 0.0 3.1 1 1 3 4 4 4 3 PQQ-like domain ANAPC4_WD40 PF12894.7 gi|20089757|ref|NP_615832.1| - 0.00085 19.6 0.0 0.42 11.0 0.0 4.3 4 1 2 6 6 6 2 Anaphase-promoting complex subunit 4 WD40 domain PD40 PF07676.12 gi|20089757|ref|NP_615832.1| - 0.0045 16.9 6.9 5.6 7.0 0.1 5.8 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat TolB_like PF15869.5 gi|20089757|ref|NP_615832.1| - 0.034 13.4 0.0 1.4 8.1 0.0 3.0 4 0 0 4 4 4 0 TolB-like 6-blade propeller-like Arylsulfotrans PF05935.11 gi|20089757|ref|NP_615832.1| - 0.037 12.9 0.1 0.82 8.5 0.0 2.6 2 1 0 2 2 2 0 Arylsulfotransferase (ASST) WD40 PF00400.32 gi|20089757|ref|NP_615832.1| - 0.041 14.8 0.1 23 6.0 0.0 4.7 5 0 0 5 5 5 0 WD domain, G-beta repeat YHS PF04945.13 gi|20089757|ref|NP_615832.1| - 0.063 13.4 0.1 0.18 11.9 0.1 1.7 1 0 0 1 1 1 0 YHS domain PQQ_2 PF13360.6 gi|20089758|ref|NP_615833.1| - 6.5e-10 39.0 2.6 1e-05 25.3 1.5 2.8 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|20089758|ref|NP_615833.1| - 8.6e-09 34.9 1.1 0.00023 20.9 0.0 5.3 6 0 0 6 6 6 1 PQQ enzyme repeat WD40 PF00400.32 gi|20089758|ref|NP_615833.1| - 0.0002 22.1 2.2 0.93 10.5 0.0 4.2 4 0 0 4 4 4 2 WD domain, G-beta repeat PQQ_3 PF13570.6 gi|20089758|ref|NP_615833.1| - 0.00081 19.8 12.8 0.28 11.7 0.2 6.8 8 0 0 8 8 8 2 PQQ-like domain ANAPC4_WD40 PF12894.7 gi|20089758|ref|NP_615833.1| - 0.0056 16.9 0.0 0.058 13.7 0.0 2.4 1 1 1 2 2 2 1 Anaphase-promoting complex subunit 4 WD40 domain PD40 PF07676.12 gi|20089758|ref|NP_615833.1| - 0.11 12.4 2.5 57 3.8 0.0 4.4 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat DUF5478 PF17572.2 gi|20089758|ref|NP_615833.1| - 0.13 12.3 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5478) S-layer PF07752.11 gi|20089760|ref|NP_615835.1| - 1.6e-70 237.1 6.2 5.2e-47 160.1 0.0 3.1 2 1 0 2 2 2 2 S-layer protein S_layer_N PF05123.12 gi|20089760|ref|NP_615835.1| - 0.5 10.2 4.0 4.6 7.0 0.1 2.8 2 1 0 2 2 2 0 S-layer like family, N-terminal region AAA_lid_2 PF17863.1 gi|20089761|ref|NP_615836.1| - 8.6e-24 83.2 0.0 2.1e-23 81.9 0.0 1.7 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|20089761|ref|NP_615836.1| - 1.1e-13 51.1 0.1 1.9e-09 37.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|20089761|ref|NP_615836.1| - 5.5e-13 49.5 0.0 1.2e-12 48.4 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|20089761|ref|NP_615836.1| - 7.5e-09 35.7 0.1 6.6e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|20089761|ref|NP_615836.1| - 1.4e-08 35.2 0.0 2.5e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.23 gi|20089761|ref|NP_615836.1| - 7.9e-08 31.7 0.0 0.00015 21.0 0.0 3.0 2 1 0 2 2 2 2 MCM P-loop domain Sigma54_activat PF00158.26 gi|20089761|ref|NP_615836.1| - 0.0009 19.0 0.0 0.095 12.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain RR_TM4-6 PF06459.12 gi|20089761|ref|NP_615836.1| - 0.0044 16.9 17.2 0.0076 16.1 17.2 1.4 1 0 0 1 1 1 1 Ryanodine Receptor TM 4-6 AAA_3 PF07726.11 gi|20089761|ref|NP_615836.1| - 0.01 15.7 0.0 1.2 9.0 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|20089761|ref|NP_615836.1| - 0.015 15.6 0.7 0.051 14.0 0.0 2.2 3 0 0 3 3 1 0 AAA ATPase domain AAA PF00004.29 gi|20089761|ref|NP_615836.1| - 0.074 13.5 0.0 0.42 11.0 0.0 2.3 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|20089761|ref|NP_615836.1| - 0.13 11.8 0.0 0.38 10.2 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region Zip PF02535.22 gi|20089761|ref|NP_615836.1| - 0.45 9.7 10.1 0.62 9.2 10.1 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Vfa1 PF08432.10 gi|20089761|ref|NP_615836.1| - 0.65 10.3 26.0 1.1 9.5 26.0 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Roughex PF06020.11 gi|20089761|ref|NP_615836.1| - 2.2 7.3 14.8 3.4 6.7 14.8 1.2 1 0 0 1 1 1 0 Drosophila roughex protein FAM76 PF16046.5 gi|20089761|ref|NP_615836.1| - 2.3 7.5 21.6 4.3 6.6 21.6 1.4 1 0 0 1 1 1 0 FAM76 protein DUF913 PF06025.12 gi|20089761|ref|NP_615836.1| - 4.8 6.0 7.9 8 5.3 7.9 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) ALMT PF11744.8 gi|20089761|ref|NP_615836.1| - 5 5.9 10.7 6.9 5.4 10.7 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter Neur_chan_memb PF02932.16 gi|20089761|ref|NP_615836.1| - 5 7.1 11.7 8.3 6.4 11.7 1.4 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region ABC_tran PF00005.27 gi|20089762|ref|NP_615837.1| - 1.2e-30 106.8 0.0 1.7e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20089762|ref|NP_615837.1| - 5.8e-18 65.2 0.1 1.1e-17 64.3 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20089762|ref|NP_615837.1| - 1.9e-07 31.2 0.8 0.00017 21.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089762|ref|NP_615837.1| - 5.8e-05 22.6 0.0 9.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|20089762|ref|NP_615837.1| - 0.0016 17.2 0.0 0.079 11.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|20089762|ref|NP_615837.1| - 0.0019 18.6 0.1 0.007 16.8 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|20089762|ref|NP_615837.1| - 0.0025 18.1 0.2 0.032 14.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain tRNA_lig_kinase PF08303.11 gi|20089762|ref|NP_615837.1| - 0.068 13.3 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 tRNA ligase kinase domain PRK PF00485.18 gi|20089762|ref|NP_615837.1| - 0.097 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|20089762|ref|NP_615837.1| - 0.099 13.0 0.0 0.18 12.2 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|20089762|ref|NP_615837.1| - 0.14 12.1 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|20089762|ref|NP_615837.1| - 0.17 11.5 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|20089763|ref|NP_615838.1| - 1.2e-27 97.1 0.1 1.6e-27 96.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20089763|ref|NP_615838.1| - 1.5e-12 47.8 0.2 3.1e-12 46.8 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|20089763|ref|NP_615838.1| - 2.1e-06 27.3 0.1 2.9e-06 26.9 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20089763|ref|NP_615838.1| - 3e-06 27.3 0.2 5.3e-05 23.2 0.0 2.0 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20089763|ref|NP_615838.1| - 0.00073 19.8 0.3 0.0065 16.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|20089763|ref|NP_615838.1| - 0.04 13.9 0.2 0.14 12.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|20089763|ref|NP_615838.1| - 0.041 13.8 0.1 0.075 12.9 0.0 1.6 2 0 0 2 2 2 0 NACHT domain ATP-synt_ab PF00006.25 gi|20089763|ref|NP_615838.1| - 0.042 13.5 0.2 0.078 12.6 0.2 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.9 gi|20089763|ref|NP_615838.1| - 0.06 12.6 0.1 0.083 12.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|20089763|ref|NP_615838.1| - 0.09 12.8 0.1 0.18 11.8 0.1 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA PF00004.29 gi|20089763|ref|NP_615838.1| - 0.12 12.7 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|20089763|ref|NP_615838.1| - 0.19 11.4 0.0 6.8 6.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|20089764|ref|NP_615839.1| - 8.1e-35 120.2 10.8 8.1e-35 120.2 10.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20089764|ref|NP_615839.1| - 3.1e-14 52.7 0.7 3.1e-14 52.7 0.7 3.3 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C Myco_arth_vir_N PF09610.10 gi|20089764|ref|NP_615839.1| - 0.079 13.1 0.1 0.079 13.1 0.1 2.8 3 0 0 3 3 3 0 Mycoplasma virulence signal region (Myco_arth_vir_N) BPD_transp_1 PF00528.22 gi|20089765|ref|NP_615840.1| - 1.1e-30 106.8 7.3 1.1e-30 106.8 7.3 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component CobN-Mg_chel PF02514.16 gi|20089766|ref|NP_615841.1| - 0 1171.0 0.0 0 1170.7 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF1932 PF09130.11 gi|20089766|ref|NP_615841.1| - 0.084 12.9 0.1 2.8 8.0 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) SBP_bac_5 PF00496.22 gi|20089767|ref|NP_615842.1| - 3.1e-91 306.1 0.1 3.7e-91 305.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle S-layer PF07752.11 gi|20089768|ref|NP_615843.1| - 4.2e-130 432.4 22.7 2.8e-69 233.0 2.5 2.1 2 0 0 2 2 2 2 S-layer protein DUF1391 PF07151.12 gi|20089768|ref|NP_615843.1| - 0.12 12.3 0.1 9.3 6.2 0.0 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1391) DUF4996 PF16387.5 gi|20089768|ref|NP_615843.1| - 0.12 12.9 0.2 18 5.9 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function DNA_pol_B PF00136.21 gi|20089769|ref|NP_615844.1| - 6.2e-108 361.4 0.0 9.3e-108 360.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|20089769|ref|NP_615844.1| - 4.9e-49 167.3 0.0 8.1e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|20089769|ref|NP_615844.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|20089769|ref|NP_615844.1| - 0.085 11.7 0.1 0.46 9.3 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral PBP_like_2 PF12849.7 gi|20089771|ref|NP_615846.1| - 2.1e-46 158.9 0.9 4.8e-46 157.7 0.9 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|20089771|ref|NP_615846.1| - 2.8e-19 69.0 0.1 4e-19 68.5 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|20089771|ref|NP_615846.1| - 2.7e-06 27.3 0.0 5.1e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|20089772|ref|NP_615847.1| - 1.1e-23 83.9 18.0 1.1e-23 83.9 18.0 2.2 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF1295 PF06966.12 gi|20089772|ref|NP_615847.1| - 0.44 10.0 0.0 0.44 10.0 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1295) PKD_channel PF08016.12 gi|20089772|ref|NP_615847.1| - 0.6 8.7 3.8 0.14 10.8 0.3 1.6 2 0 0 2 2 2 0 Polycystin cation channel DUF4227 PF14004.6 gi|20089772|ref|NP_615847.1| - 0.9 9.6 6.3 3.2 7.8 2.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) BPD_transp_1 PF00528.22 gi|20089773|ref|NP_615848.1| - 1.7e-26 93.1 13.5 1.7e-26 93.1 13.5 2.4 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3333 PF11812.8 gi|20089773|ref|NP_615848.1| - 0.035 14.3 1.0 0.035 14.3 1.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF3333) DUF2780 PF11075.8 gi|20089773|ref|NP_615848.1| - 0.087 13.0 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function VcgC/VcgE (DUF2780) TssN PF17555.2 gi|20089773|ref|NP_615848.1| - 1.2 8.5 11.1 0.16 11.3 0.6 3.2 3 1 1 4 4 4 0 Type VI secretion system, TssN ABC_tran PF00005.27 gi|20089774|ref|NP_615849.1| - 3.4e-31 108.6 0.0 4.7e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089774|ref|NP_615849.1| - 5.8e-12 46.0 0.0 2.2e-05 24.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089774|ref|NP_615849.1| - 1.3e-08 34.6 0.0 1.5e-06 27.8 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20089774|ref|NP_615849.1| - 1.4e-05 25.0 0.0 2.8e-05 24.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20089774|ref|NP_615849.1| - 3.5e-05 23.8 0.0 6.9e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|20089774|ref|NP_615849.1| - 0.00087 19.0 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|20089774|ref|NP_615849.1| - 0.00097 19.1 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|20089774|ref|NP_615849.1| - 0.0012 19.3 0.0 0.0029 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|20089774|ref|NP_615849.1| - 0.002 18.7 0.0 0.0037 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20089774|ref|NP_615849.1| - 0.0035 17.6 0.0 0.008 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|20089774|ref|NP_615849.1| - 0.0076 15.8 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|20089774|ref|NP_615849.1| - 0.03 14.7 0.0 0.82 10.1 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|20089774|ref|NP_615849.1| - 0.043 14.0 0.0 0.067 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|20089774|ref|NP_615849.1| - 0.049 14.2 0.0 0.093 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|20089774|ref|NP_615849.1| - 0.051 12.4 0.0 0.08 11.8 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase Gemin6 PF06372.12 gi|20089774|ref|NP_615849.1| - 0.12 11.9 0.1 0.38 10.3 0.0 1.7 2 0 0 2 2 2 0 Gemin6 protein AAA_24 PF13479.6 gi|20089774|ref|NP_615849.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|20089774|ref|NP_615849.1| - 0.15 11.8 0.1 0.4 10.4 0.0 1.7 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PhoU PF01895.19 gi|20089775|ref|NP_615850.1| - 2.9e-37 127.0 7.3 2.8e-21 75.8 0.7 2.1 2 0 0 2 2 2 2 PhoU domain RNA_pol_Rpo13 PF12136.8 gi|20089775|ref|NP_615850.1| - 0.061 13.2 0.2 0.14 12.1 0.2 1.6 1 0 0 1 1 1 0 RNA polymerase Rpo13 subunit HTH domain Amidohydro_1 PF01979.20 gi|20089776|ref|NP_615851.1| - 4.6e-23 82.1 0.0 6.4e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|20089776|ref|NP_615851.1| - 2.6e-15 56.9 0.0 2.6e-06 27.2 0.0 3.0 3 0 0 3 3 3 2 Amidohydrolase family KH_1 PF00013.29 gi|20089777|ref|NP_615852.1| - 2.7e-12 46.3 3.5 2.9e-08 33.4 0.3 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|20089777|ref|NP_615852.1| - 0.0004 20.2 3.8 0.057 13.2 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|20089777|ref|NP_615852.1| - 0.016 15.0 5.0 2.2 8.2 0.2 3.4 2 1 1 3 3 3 0 KH domain RIO1 PF01163.22 gi|20089778|ref|NP_615853.1| - 7.5e-62 208.3 0.2 1e-61 207.8 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|20089778|ref|NP_615853.1| - 1.5e-06 27.8 0.0 2.7e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|20089778|ref|NP_615853.1| - 0.00093 18.1 0.0 0.0017 17.2 0.0 1.4 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|20089778|ref|NP_615853.1| - 0.0029 17.0 0.0 0.79 9.0 0.0 2.3 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|20089778|ref|NP_615853.1| - 0.0037 17.2 0.0 0.088 12.7 0.0 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family eIF-1a PF01176.19 gi|20089779|ref|NP_615854.1| - 2.8e-19 68.7 0.4 4e-19 68.2 0.4 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Med14 PF08638.11 gi|20089779|ref|NP_615854.1| - 0.0016 17.9 0.0 0.002 17.6 0.0 1.1 1 0 0 1 1 1 1 Mediator complex subunit MED14 SNF PF00209.18 gi|20089780|ref|NP_615855.1| - 2e-57 195.1 33.4 3e-33 115.3 15.3 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family NAC PF01849.18 gi|20089781|ref|NP_615856.1| - 5.1e-18 64.8 4.8 9e-18 64.0 4.8 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|20089781|ref|NP_615856.1| - 0.00021 21.0 0.1 0.00032 20.5 0.1 1.2 1 0 0 1 1 1 1 UBA-like domain DUF1257 PF06868.11 gi|20089781|ref|NP_615856.1| - 0.023 14.9 0.2 0.039 14.2 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1257) HOIP-UBA PF16678.5 gi|20089781|ref|NP_615856.1| - 0.033 14.2 0.4 0.063 13.3 0.2 1.5 1 1 0 1 1 1 0 HOIP UBA domain pair DP-EP PF08985.11 gi|20089781|ref|NP_615856.1| - 0.033 14.4 0.7 0.04 14.1 0.7 1.1 1 0 0 1 1 1 0 DP-EP family Cu_amine_oxidN1 PF07833.11 gi|20089781|ref|NP_615856.1| - 0.048 14.2 0.4 0.06 13.8 0.4 1.2 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain DUF3867 PF12983.7 gi|20089781|ref|NP_615856.1| - 0.085 12.9 2.8 0.33 11.0 2.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3867) IL2 PF00715.17 gi|20089781|ref|NP_615856.1| - 0.089 12.7 0.5 0.16 11.9 0.3 1.5 1 1 0 1 1 1 0 Interleukin 2 ANTAR PF03861.14 gi|20089781|ref|NP_615856.1| - 0.38 10.6 2.0 1.7 8.6 0.3 2.8 3 1 0 3 3 3 0 ANTAR domain Fe-S_biosyn PF01521.20 gi|20089782|ref|NP_615857.1| - 7.1e-13 48.7 0.0 8.2e-13 48.5 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Mrr_cat PF04471.12 gi|20089783|ref|NP_615858.1| - 0.0028 17.7 0.0 0.034 14.2 0.0 2.3 1 1 0 1 1 1 1 Restriction endonuclease DUF2652 PF10851.8 gi|20089783|ref|NP_615858.1| - 0.042 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2652) PepSY PF03413.19 gi|20089783|ref|NP_615858.1| - 0.089 13.4 0.8 1.1 9.8 0.2 2.6 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain GDE_C PF06202.14 gi|20089784|ref|NP_615859.1| - 1.9e-140 468.2 0.0 4.3e-140 467.0 0.0 1.5 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|20089784|ref|NP_615859.1| - 2e-68 230.1 0.0 2.8e-68 229.6 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|20089784|ref|NP_615859.1| - 0.00029 19.6 0.1 0.038 12.6 0.0 2.6 2 1 0 2 2 2 2 Alkaline and neutral invertase DUF608 PF04685.13 gi|20089784|ref|NP_615859.1| - 0.0013 18.0 0.1 0.0022 17.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region PKD PF00801.20 gi|20089785|ref|NP_615860.1| - 5.7e-12 45.3 2.5 7.5e-12 44.9 1.4 1.8 2 0 0 2 2 2 1 PKD domain Big_1 PF02369.16 gi|20089785|ref|NP_615860.1| - 0.00031 20.7 1.5 0.00031 20.7 1.5 4.0 2 1 1 4 4 4 1 Bacterial Ig-like domain (group 1) YtkA PF13115.6 gi|20089785|ref|NP_615860.1| - 0.0072 16.9 3.0 0.89 10.2 0.6 2.8 1 1 2 3 3 3 2 YtkA-like DUF807 PF05660.11 gi|20089785|ref|NP_615860.1| - 0.011 15.6 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF807) CarboxypepD_reg PF13620.6 gi|20089785|ref|NP_615860.1| - 0.013 15.8 1.2 0.013 15.8 1.2 3.2 3 1 1 4 4 4 0 Carboxypeptidase regulatory-like domain Secretin_N_2 PF07655.13 gi|20089785|ref|NP_615860.1| - 6 7.5 12.1 0.18 12.4 4.1 2.2 1 1 1 2 2 2 0 Secretin N-terminal domain PRA-CH PF01502.18 gi|20089786|ref|NP_615861.1| - 8.6e-37 124.8 0.8 1.2e-36 124.4 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Sipho_Gp37 PF14594.6 gi|20089786|ref|NP_615861.1| - 0.12 11.4 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Siphovirus ReqiPepy6 Gp37-like protein T2SSE PF00437.20 gi|20089787|ref|NP_615862.1| - 2.1e-11 43.4 0.1 3.7e-11 42.6 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|20089787|ref|NP_615862.1| - 7.9e-05 23.1 0.0 0.00022 21.7 0.0 1.8 1 0 0 1 1 1 1 PIN domain KH_2 PF07650.17 gi|20089787|ref|NP_615862.1| - 0.00017 21.3 1.2 0.00063 19.5 1.2 2.0 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|20089787|ref|NP_615862.1| - 0.00021 21.0 0.4 0.00074 19.3 0.4 2.0 1 0 0 1 1 1 1 KH domain PIN_4 PF13638.6 gi|20089787|ref|NP_615862.1| - 0.00055 20.2 0.0 0.0013 19.0 0.0 1.7 1 0 0 1 1 1 1 PIN domain TIP49 PF06068.13 gi|20089787|ref|NP_615862.1| - 0.0009 18.5 0.8 0.0025 17.1 0.0 2.0 2 1 1 3 3 3 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|20089787|ref|NP_615862.1| - 0.0013 19.1 0.0 0.0025 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain KH_4 PF13083.6 gi|20089787|ref|NP_615862.1| - 0.0043 16.9 0.4 0.016 15.1 0.4 2.0 1 0 0 1 1 1 1 KH domain Zeta_toxin PF06414.12 gi|20089787|ref|NP_615862.1| - 0.0045 16.3 0.0 0.0089 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_11 PF13086.6 gi|20089787|ref|NP_615862.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20089787|ref|NP_615862.1| - 0.012 15.7 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|20089787|ref|NP_615862.1| - 0.013 16.0 0.0 0.029 14.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|20089787|ref|NP_615862.1| - 0.018 15.0 0.0 0.048 13.6 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA PF00004.29 gi|20089787|ref|NP_615862.1| - 0.018 15.5 0.0 0.045 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|20089787|ref|NP_615862.1| - 0.025 14.3 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.20 gi|20089787|ref|NP_615862.1| - 0.032 14.1 0.0 0.29 11.0 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_22 PF13401.6 gi|20089787|ref|NP_615862.1| - 0.033 14.5 0.0 0.55 10.5 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA_24 PF13479.6 gi|20089787|ref|NP_615862.1| - 0.038 13.7 0.0 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|20089787|ref|NP_615862.1| - 0.046 13.4 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|20089787|ref|NP_615862.1| - 0.055 12.8 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 KaiC TsaE PF02367.17 gi|20089787|ref|NP_615862.1| - 0.056 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|20089787|ref|NP_615862.1| - 0.057 13.4 0.0 0.17 11.8 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|20089787|ref|NP_615862.1| - 0.059 13.1 0.1 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|20089787|ref|NP_615862.1| - 0.089 12.4 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|20089787|ref|NP_615862.1| - 0.089 13.1 0.0 3.6 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|20089787|ref|NP_615862.1| - 0.11 12.8 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|20089787|ref|NP_615862.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Thymidylate_kin PF02223.17 gi|20089787|ref|NP_615862.1| - 0.16 11.6 0.0 0.37 10.5 0.0 1.6 1 1 0 1 1 1 0 Thymidylate kinase IstB_IS21 PF01695.17 gi|20089787|ref|NP_615862.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PPV_E1_C PF00519.17 gi|20089787|ref|NP_615862.1| - 0.23 10.2 0.0 0.34 9.7 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase DUF241 PF03087.14 gi|20089788|ref|NP_615863.1| - 0.0019 18.1 2.9 0.48 10.2 0.5 2.1 2 0 0 2 2 2 2 Arabidopsis protein of unknown function Baculo_PEP_C PF04513.12 gi|20089788|ref|NP_615863.1| - 0.0025 17.8 0.2 0.0085 16.1 0.1 1.8 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_2 PF01920.20 gi|20089788|ref|NP_615863.1| - 0.0061 16.5 0.2 4.5 7.3 0.0 2.8 2 1 0 2 2 2 2 Prefoldin subunit FlaC_arch PF05377.11 gi|20089788|ref|NP_615863.1| - 0.053 13.9 1.9 2 8.9 0.1 3.5 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) LPP PF04728.13 gi|20089788|ref|NP_615863.1| - 0.15 12.5 1.0 2.8 8.4 0.1 2.9 2 1 1 3 3 3 0 Lipoprotein leucine-zipper Lebercilin PF15619.6 gi|20089788|ref|NP_615863.1| - 0.17 11.5 0.4 15 5.2 0.0 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease CCDC-167 PF15188.6 gi|20089788|ref|NP_615863.1| - 0.18 12.2 1.8 1 9.7 0.1 2.8 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 Helo_like_N PF17111.5 gi|20089788|ref|NP_615863.1| - 0.19 11.1 0.5 0.45 9.9 0.1 1.7 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins HMMR_N PF15905.5 gi|20089788|ref|NP_615863.1| - 0.36 10.2 2.1 2.2 7.7 0.1 2.0 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal CarboxypepD_reg PF13620.6 gi|20089789|ref|NP_615864.1| - 0.0088 16.3 0.0 0.015 15.5 0.0 1.4 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|20089789|ref|NP_615864.1| - 0.052 13.6 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Big_1 PF02369.16 gi|20089790|ref|NP_615865.1| - 0.00015 21.7 4.1 0.00029 20.8 4.1 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|20089790|ref|NP_615865.1| - 0.0012 19.1 1.1 0.005 17.1 1.1 2.0 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF824 PF05688.11 gi|20089790|ref|NP_615865.1| - 0.023 14.5 0.2 0.049 13.5 0.2 1.5 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) MG4 PF17789.1 gi|20089790|ref|NP_615865.1| - 0.064 13.4 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 Macroglobulin domain MG4 GATase PF00117.28 gi|20089791|ref|NP_615866.1| - 7.1e-22 78.1 0.0 9.2e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|20089791|ref|NP_615866.1| - 1.1e-07 32.0 0.0 5.6e-07 29.6 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|20089791|ref|NP_615866.1| - 2e-06 27.8 0.0 3.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|20089791|ref|NP_615866.1| - 8.7e-05 22.2 0.7 0.00056 19.6 0.1 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|20089791|ref|NP_615866.1| - 0.0083 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family AIRS_C PF02769.22 gi|20089792|ref|NP_615867.1| - 3.7e-16 59.6 1.0 6.9e-16 58.8 1.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|20089792|ref|NP_615867.1| - 2.3e-07 31.4 0.4 5.8e-07 30.1 0.4 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NfeD PF01957.18 gi|20089793|ref|NP_615868.1| - 8e-12 45.4 3.9 1.2e-11 44.8 0.3 3.1 4 0 0 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|20089793|ref|NP_615868.1| - 2.4e-06 27.6 0.5 4e-06 26.8 0.5 1.3 1 0 0 1 1 1 1 Clp protease FMN_dh PF01070.18 gi|20089793|ref|NP_615868.1| - 0.018 14.1 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase SDH_sah PF01972.16 gi|20089793|ref|NP_615868.1| - 0.058 12.4 0.4 0.091 11.7 0.4 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|20089793|ref|NP_615868.1| - 0.071 12.4 0.5 0.79 9.0 0.5 2.1 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Band_7 PF01145.25 gi|20089794|ref|NP_615869.1| - 1.9e-39 135.5 2.0 2.6e-39 135.1 2.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|20089794|ref|NP_615869.1| - 5.1e-05 23.1 0.1 9.6e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family DnaJ_CXXCXGXG PF00684.19 gi|20089795|ref|NP_615870.1| - 1.6e-09 37.9 18.4 5.4e-08 33.1 10.2 2.6 1 1 2 3 3 3 3 DnaJ central domain tRNA_anti-codon PF01336.25 gi|20089795|ref|NP_615870.1| - 4.4e-09 36.2 0.0 1e-08 35.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|20089795|ref|NP_615870.1| - 2.3e-06 27.7 0.2 5.6e-06 26.5 0.2 1.6 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|20089795|ref|NP_615870.1| - 0.00036 20.7 0.0 0.001 19.2 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RMI2 PF16100.5 gi|20089795|ref|NP_615870.1| - 0.0025 17.6 0.0 0.0053 16.6 0.0 1.5 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 S1 PF00575.23 gi|20089795|ref|NP_615870.1| - 0.0039 17.5 0.2 0.0039 17.5 0.2 2.3 3 0 0 3 3 3 1 S1 RNA binding domain zf-CHY PF05495.12 gi|20089795|ref|NP_615870.1| - 0.029 14.9 0.6 0.029 14.9 0.6 2.8 2 1 1 3 3 3 0 CHY zinc finger zf-C4pol PF14260.6 gi|20089795|ref|NP_615870.1| - 3.4 8.2 12.6 9.8 6.7 3.3 2.6 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta C1_2 PF03107.16 gi|20089795|ref|NP_615870.1| - 6.8 7.1 9.2 0.65 10.4 2.5 2.5 2 0 0 2 2 2 0 C1 domain Acetyltransf_10 PF13673.7 gi|20089796|ref|NP_615871.1| - 6.2e-15 55.3 0.0 7.9e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20089796|ref|NP_615871.1| - 1.7e-13 50.8 0.0 2e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20089796|ref|NP_615871.1| - 5.3e-11 42.8 0.0 7.8e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20089796|ref|NP_615871.1| - 1.7e-07 31.4 0.0 3.7e-07 30.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20089796|ref|NP_615871.1| - 0.0029 18.3 0.0 0.0036 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20089796|ref|NP_615871.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein GNAT_acetyltran PF12746.7 gi|20089796|ref|NP_615871.1| - 0.022 14.3 0.1 0.067 12.7 0.1 1.8 1 1 0 1 1 1 0 GNAT acetyltransferase Pribosyltran PF00156.27 gi|20089797|ref|NP_615872.1| - 1.6e-20 73.2 0.7 2.8e-20 72.4 0.7 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|20089797|ref|NP_615872.1| - 8.6e-07 28.6 0.8 3.4e-05 23.4 0.2 2.1 1 1 1 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|20089797|ref|NP_615872.1| - 4.2e-05 23.1 1.7 0.00011 21.7 0.3 2.0 1 1 0 2 2 2 1 Uracil phosphoribosyltransferase HTH_7 PF02796.15 gi|20089797|ref|NP_615872.1| - 0.00088 19.3 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|20089797|ref|NP_615872.1| - 0.008 16.1 0.2 0.044 13.7 0.1 2.2 3 0 0 3 3 2 1 HTH domain GerE PF00196.19 gi|20089797|ref|NP_615872.1| - 0.013 15.1 0.0 0.032 13.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family CBAH PF02275.18 gi|20089797|ref|NP_615872.1| - 0.035 13.7 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Linear amide C-N hydrolases, choloylglycine hydrolase family PAX PF00292.18 gi|20089797|ref|NP_615872.1| - 0.039 13.9 0.2 1.2 9.0 0.0 2.3 2 1 0 2 2 2 0 'Paired box' domain Pribosyl_synth PF14572.6 gi|20089797|ref|NP_615872.1| - 0.047 13.7 0.1 0.072 13.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain HTH_23 PF13384.6 gi|20089797|ref|NP_615872.1| - 0.064 13.1 0.1 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|20089797|ref|NP_615872.1| - 0.076 13.0 0.1 0.24 11.4 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|20089797|ref|NP_615872.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20089797|ref|NP_615872.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|20089797|ref|NP_615872.1| - 0.15 11.6 0.1 0.54 9.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PIN_6 PF17146.4 gi|20089798|ref|NP_615873.1| - 7.1e-14 52.1 0.1 1.3e-13 51.3 0.1 1.4 1 0 0 1 1 1 1 PIN domain of ribonuclease zinc-ribbons_6 PF07191.12 gi|20089798|ref|NP_615873.1| - 0.0051 16.8 0.7 0.011 15.6 0.7 1.6 1 0 0 1 1 1 1 zinc-ribbons PIN_4 PF13638.6 gi|20089798|ref|NP_615873.1| - 0.0073 16.6 0.4 0.013 15.8 0.4 1.5 1 1 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|20089798|ref|NP_615873.1| - 0.011 15.2 0.6 0.033 13.6 0.3 1.7 1 1 1 2 2 2 0 PINc domain ribonuclease Rad50_zn_hook PF04423.14 gi|20089798|ref|NP_615873.1| - 0.013 15.3 2.2 0.013 15.3 2.2 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Prok-RING_1 PF14446.6 gi|20089798|ref|NP_615873.1| - 0.015 15.2 1.6 0.031 14.2 1.6 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 AAA_13 PF13166.6 gi|20089798|ref|NP_615873.1| - 0.041 12.5 1.1 0.051 12.2 1.1 1.1 1 0 0 1 1 1 0 AAA domain DNA_ligase_ZBD PF03119.16 gi|20089798|ref|NP_615873.1| - 0.053 13.6 0.2 0.11 12.5 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.6 gi|20089798|ref|NP_615873.1| - 0.13 12.1 1.2 0.24 11.3 1.2 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF169 PF02596.15 gi|20089799|ref|NP_615874.1| - 3.1e-57 193.8 0.1 3.5e-57 193.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Ribosomal_S8e PF01201.22 gi|20089801|ref|NP_615876.1| - 1.9e-35 122.0 6.0 2.1e-35 121.9 6.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AsnC_trans_reg PF01037.21 gi|20089802|ref|NP_615877.1| - 1.6e-16 60.0 0.1 3.3e-16 59.0 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|20089802|ref|NP_615877.1| - 4.5e-11 42.1 0.1 1.4e-10 40.5 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|20089802|ref|NP_615877.1| - 9.1e-11 41.4 0.6 1.9e-10 40.4 0.2 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|20089802|ref|NP_615877.1| - 3.7e-06 26.9 0.0 6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|20089802|ref|NP_615877.1| - 3.9e-06 26.7 0.1 1.5e-05 24.9 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|20089802|ref|NP_615877.1| - 5.3e-06 26.2 0.0 9.1e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|20089802|ref|NP_615877.1| - 9e-05 22.3 0.1 0.00032 20.6 0.1 1.9 1 1 0 1 1 1 1 HTH domain MarR PF01047.22 gi|20089802|ref|NP_615877.1| - 0.0014 18.5 0.1 0.0026 17.7 0.1 1.5 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|20089802|ref|NP_615877.1| - 0.0029 17.4 0.2 0.0051 16.7 0.2 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit DUF4423 PF14394.6 gi|20089802|ref|NP_615877.1| - 0.0031 17.3 0.1 0.0098 15.6 0.1 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|20089802|ref|NP_615877.1| - 0.0053 16.9 0.1 0.014 15.6 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|20089802|ref|NP_615877.1| - 0.0062 16.6 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_34 PF13601.6 gi|20089802|ref|NP_615877.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|20089802|ref|NP_615877.1| - 0.023 14.6 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|20089802|ref|NP_615877.1| - 0.025 14.9 0.2 0.12 12.8 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator DUF2513 PF10711.9 gi|20089802|ref|NP_615877.1| - 0.025 14.9 0.5 0.065 13.5 0.2 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) DUF2250 PF10007.9 gi|20089802|ref|NP_615877.1| - 0.031 14.4 0.1 0.055 13.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|20089802|ref|NP_615877.1| - 0.033 14.7 0.2 0.095 13.2 0.1 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|20089802|ref|NP_615877.1| - 0.038 13.9 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|20089802|ref|NP_615877.1| - 0.044 13.9 0.3 0.096 12.8 0.3 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 RPA_C PF08784.11 gi|20089802|ref|NP_615877.1| - 0.056 14.1 0.1 0.12 13.0 0.1 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_IclR PF09339.10 gi|20089802|ref|NP_615877.1| - 0.13 12.1 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|20089802|ref|NP_615877.1| - 0.15 11.9 0.0 0.62 9.9 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain Aminotran_1_2 PF00155.21 gi|20089803|ref|NP_615878.1| - 9.9e-61 205.9 0.0 1.2e-60 205.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|20089803|ref|NP_615878.1| - 1.7e-11 44.1 0.7 2.5e-11 43.5 0.7 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|20089803|ref|NP_615878.1| - 5.6e-06 25.5 0.0 8.4e-06 25.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|20089803|ref|NP_615878.1| - 0.0082 14.7 0.1 0.012 14.1 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|20089803|ref|NP_615878.1| - 0.051 12.5 0.0 0.28 10.0 0.0 1.9 2 0 0 2 2 2 0 Allinase OKR_DC_1 PF01276.20 gi|20089803|ref|NP_615878.1| - 0.085 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain TrmB PF01978.19 gi|20089804|ref|NP_615879.1| - 2.2e-19 69.1 0.1 3.6e-19 68.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|20089804|ref|NP_615879.1| - 0.0002 21.3 0.0 0.00032 20.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.17 gi|20089804|ref|NP_615879.1| - 0.00029 20.7 0.4 0.00038 20.3 0.4 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit PvlArgDC PF01862.16 gi|20089804|ref|NP_615879.1| - 0.0054 16.6 0.0 0.0067 16.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) HTH_IclR PF09339.10 gi|20089804|ref|NP_615879.1| - 0.0056 16.5 0.0 0.0094 15.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|20089804|ref|NP_615879.1| - 0.0073 16.2 0.0 0.019 14.9 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|20089804|ref|NP_615879.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|20089804|ref|NP_615879.1| - 0.022 15.3 0.2 0.49 10.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|20089804|ref|NP_615879.1| - 0.052 13.4 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|20089804|ref|NP_615879.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation GntR PF00392.21 gi|20089804|ref|NP_615879.1| - 0.17 11.6 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF5591 PF17884.1 gi|20089805|ref|NP_615880.1| - 8.1e-19 68.0 0.2 1.2e-18 67.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) EamA PF00892.20 gi|20089807|ref|NP_615882.1| - 1.7e-14 54.2 37.5 1.6e-07 31.5 11.5 2.2 2 0 0 2 2 2 2 EamA-like transporter family B12-binding PF02310.19 gi|20089809|ref|NP_615884.1| - 4.8e-24 84.7 1.1 8.5e-24 83.9 0.7 1.6 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|20089809|ref|NP_615884.1| - 3.4e-19 69.0 1.3 9e-19 67.7 1.1 1.8 2 0 0 2 2 2 1 B12 binding domain MTTB PF06253.11 gi|20089810|ref|NP_615885.1| - 2.5e-98 329.2 0.0 3.2e-98 328.9 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) Dimeth_Pyl PF09505.10 gi|20089811|ref|NP_615886.1| - 4e-268 889.4 7.4 4.5e-268 889.2 7.4 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) B12-binding PF02310.19 gi|20089812|ref|NP_615887.1| - 1.5e-27 96.0 0.6 2.4e-27 95.4 0.6 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20089812|ref|NP_615887.1| - 1.7e-19 70.0 0.6 4.6e-19 68.6 0.6 1.8 1 0 0 1 1 1 1 B12 binding domain UPF0051 PF01458.17 gi|20089814|ref|NP_615889.1| - 2e-37 129.0 0.2 2.6e-37 128.6 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|20089815|ref|NP_615890.1| - 3.1e-25 89.3 0.0 4e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20089815|ref|NP_615890.1| - 2.8e-11 43.3 0.0 5.1e-07 29.3 0.0 2.0 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20089815|ref|NP_615890.1| - 4.4e-11 43.1 0.1 5.4e-05 23.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20089815|ref|NP_615890.1| - 0.0066 16.2 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|20089815|ref|NP_615890.1| - 0.0091 16.3 0.1 0.036 14.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|20089815|ref|NP_615890.1| - 0.0095 14.6 0.0 0.31 9.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|20089815|ref|NP_615890.1| - 0.021 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|20089815|ref|NP_615890.1| - 0.025 15.1 0.3 0.041 14.4 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20089815|ref|NP_615890.1| - 0.027 14.6 0.0 0.031 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|20089815|ref|NP_615890.1| - 0.047 13.4 0.0 0.075 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|20089815|ref|NP_615890.1| - 0.1 11.7 0.1 5.5 6.1 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|20089815|ref|NP_615890.1| - 0.18 11.5 0.0 1.2 8.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTP_transf_3 PF12804.7 gi|20089816|ref|NP_615891.1| - 1.2e-14 55.0 0.0 1.5e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|20089816|ref|NP_615891.1| - 2.1e-08 34.2 0.0 3e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|20089816|ref|NP_615891.1| - 2.9e-08 33.9 0.0 8.3e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|20089816|ref|NP_615891.1| - 0.0013 18.4 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 gi|20089816|ref|NP_615891.1| - 0.0064 15.7 0.2 0.0091 15.2 0.2 1.5 1 1 0 1 1 1 1 Guanylyl transferase CofC like DUF2064 PF09837.9 gi|20089816|ref|NP_615891.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) CobS PF02654.15 gi|20089817|ref|NP_615892.1| - 4.7e-38 131.5 8.7 5.4e-38 131.2 8.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CD225 PF04505.12 gi|20089817|ref|NP_615892.1| - 0.1 12.8 0.6 0.36 11.0 0.6 2.0 1 0 0 1 1 1 0 Interferon-induced transmembrane protein PgpA PF04608.13 gi|20089818|ref|NP_615893.1| - 1.5e-09 38.0 0.0 2e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobD_Cbib PF03186.13 gi|20089819|ref|NP_615894.1| - 3.7e-89 298.6 0.1 4.5e-89 298.3 0.1 1.0 1 0 0 1 1 1 1 CobD/Cbib protein XFP PF03894.15 gi|20089819|ref|NP_615894.1| - 0.19 11.4 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Aminotran_1_2 PF00155.21 gi|20089820|ref|NP_615895.1| - 4.3e-45 154.4 0.0 5.2e-45 154.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.12 gi|20089820|ref|NP_615895.1| - 6.8e-26 90.0 7.7 1.4e-25 89.0 7.7 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_5 PF00266.19 gi|20089820|ref|NP_615895.1| - 0.0099 14.9 0.0 0.062 12.2 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V Methyltransf_33 PF10017.9 gi|20089820|ref|NP_615895.1| - 0.029 13.5 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent DUF243 PF03103.17 gi|20089820|ref|NP_615895.1| - 0.17 12.2 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF243) tRNA-synt_His PF13393.6 gi|20089821|ref|NP_615896.1| - 4.5e-59 200.2 0.0 6e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|20089821|ref|NP_615896.1| - 1.5e-15 57.7 0.0 2.3e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|20089821|ref|NP_615896.1| - 2.3e-14 53.3 0.1 3.7e-14 52.6 0.1 1.3 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|20089821|ref|NP_615896.1| - 3.5e-05 23.0 1.3 0.19 10.8 0.1 3.0 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|20089821|ref|NP_615896.1| - 0.036 13.5 0.0 0.19 11.2 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) DDE_Tnp_1_6 PF13751.6 gi|20089822|ref|NP_615897.1| - 2.2e-28 99.0 3.8 6.3e-28 97.5 2.5 2.3 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20089822|ref|NP_615897.1| - 8.2e-20 71.4 1.3 2.5e-19 69.8 1.3 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20089822|ref|NP_615897.1| - 1e-15 57.5 0.0 2.7e-15 56.1 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|20089822|ref|NP_615897.1| - 0.017 15.5 0.3 1.7 9.1 0.0 3.0 3 0 0 3 3 3 0 Transposase DDE domain AhpC-TSA PF00578.21 gi|20089822|ref|NP_615897.1| - 0.059 13.3 0.4 0.13 12.2 0.4 1.5 1 0 0 1 1 1 0 AhpC/TSA family RE_XamI PF09572.10 gi|20089822|ref|NP_615897.1| - 0.08 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 XamI restriction endonuclease Ribosomal_S13_N PF08069.12 gi|20089827|ref|NP_615902.1| - 3.7e-26 91.0 0.2 9.2e-26 89.7 0.2 1.7 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|20089827|ref|NP_615902.1| - 2.7e-16 59.6 0.5 3.7e-16 59.1 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Herpes_UL79 PF03049.14 gi|20089827|ref|NP_615902.1| - 0.049 13.3 0.0 0.062 12.9 0.0 1.1 1 0 0 1 1 1 0 UL79 family ABC_tran PF00005.27 gi|20089828|ref|NP_615903.1| - 3e-30 105.5 0.0 3.9e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089828|ref|NP_615903.1| - 1.4e-11 44.8 0.9 0.00013 21.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20089828|ref|NP_615903.1| - 4.7e-05 24.0 0.0 5.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089828|ref|NP_615903.1| - 6.9e-05 22.5 0.0 0.00021 21.0 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|20089828|ref|NP_615903.1| - 8.5e-05 23.0 0.0 0.0002 21.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|20089828|ref|NP_615903.1| - 0.00024 20.6 0.2 0.41 10.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20089828|ref|NP_615903.1| - 0.00054 19.9 0.0 0.00098 19.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|20089828|ref|NP_615903.1| - 0.0012 17.7 0.3 0.5 9.1 0.1 3.1 2 2 0 2 2 2 1 Predicted ATPase of the ABC class AAA PF00004.29 gi|20089828|ref|NP_615903.1| - 0.0018 18.7 0.0 0.024 15.1 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|20089828|ref|NP_615903.1| - 0.0019 18.5 0.5 0.012 15.9 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|20089828|ref|NP_615903.1| - 0.0026 17.5 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|20089828|ref|NP_615903.1| - 0.0028 17.7 0.1 0.039 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|20089828|ref|NP_615903.1| - 0.0069 16.1 0.0 0.016 15.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|20089828|ref|NP_615903.1| - 0.011 15.5 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20089828|ref|NP_615903.1| - 0.016 15.4 0.0 0.068 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|20089828|ref|NP_615903.1| - 0.026 14.9 0.9 0.17 12.2 0.9 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20089828|ref|NP_615903.1| - 0.026 14.4 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|20089828|ref|NP_615903.1| - 0.027 15.0 0.0 0.062 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|20089828|ref|NP_615903.1| - 0.03 14.3 0.5 0.08 12.9 0.5 2.0 1 1 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|20089828|ref|NP_615903.1| - 0.035 13.3 1.1 0.067 12.4 0.0 1.9 3 0 0 3 3 3 0 NB-ARC domain SRP54 PF00448.22 gi|20089828|ref|NP_615903.1| - 0.048 13.3 0.0 0.081 12.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|20089828|ref|NP_615903.1| - 0.049 12.3 0.0 5 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|20089828|ref|NP_615903.1| - 0.07 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|20089828|ref|NP_615903.1| - 0.079 12.5 0.0 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|20089828|ref|NP_615903.1| - 0.081 12.7 0.1 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|20089828|ref|NP_615903.1| - 0.098 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|20089828|ref|NP_615903.1| - 0.1 12.9 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|20089828|ref|NP_615903.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|20089828|ref|NP_615903.1| - 0.15 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain TniB PF05621.11 gi|20089828|ref|NP_615903.1| - 0.17 11.3 1.4 4.5 6.6 0.5 2.3 1 1 1 2 2 2 0 Bacterial TniB protein TsaE PF02367.17 gi|20089828|ref|NP_615903.1| - 0.18 11.8 0.0 0.35 10.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE FecCD PF01032.18 gi|20089829|ref|NP_615904.1| - 2.6e-89 299.3 33.8 3.3e-89 299.0 33.8 1.0 1 0 0 1 1 1 1 FecCD transport family BPD_transp_1 PF00528.22 gi|20089829|ref|NP_615904.1| - 0.0065 16.2 3.0 0.0065 16.2 3.0 4.5 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component Peripla_BP_2 PF01497.18 gi|20089830|ref|NP_615905.1| - 6.5e-24 84.8 0.0 1.1e-23 84.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Tubulin PF00091.25 gi|20089831|ref|NP_615906.1| - 1.3e-33 116.9 0.5 2.4e-33 116.0 0.5 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|20089831|ref|NP_615906.1| - 0.0087 15.3 0.1 0.021 14.0 0.1 1.8 1 1 0 1 1 1 1 Tubulin like DUF11 PF01345.18 gi|20089832|ref|NP_615907.1| - 4.8e-17 62.1 7.2 4.9e-08 33.2 4.5 3.5 1 1 1 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|20089832|ref|NP_615907.1| - 7.4e-10 38.5 5.9 8.1e-06 25.3 2.5 2.5 1 1 0 2 2 2 2 Translocon-associated protein beta (TRAPB) BatD PF13584.6 gi|20089832|ref|NP_615907.1| - 2.2e-05 23.5 10.7 0.00026 19.9 5.9 3.0 1 1 1 3 3 3 1 Oxygen tolerance ChitinaseA_N PF08329.10 gi|20089832|ref|NP_615907.1| - 0.00039 20.1 0.2 0.003 17.2 0.0 2.4 3 0 0 3 3 3 1 Chitinase A, N-terminal domain NPCBM_assoc PF10633.9 gi|20089832|ref|NP_615907.1| - 0.00043 20.5 1.0 0.52 10.6 0.0 3.4 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|20089832|ref|NP_615907.1| - 0.0011 19.2 14.7 0.031 14.5 1.3 4.2 1 1 3 4 4 4 2 CARDB Big_3_3 PF13750.6 gi|20089832|ref|NP_615907.1| - 0.0026 17.4 9.1 0.26 10.9 0.1 3.4 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 3) DUF1573 PF07610.11 gi|20089832|ref|NP_615907.1| - 0.041 13.9 0.6 14 5.8 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1573) bMG10 PF17973.1 gi|20089832|ref|NP_615907.1| - 0.11 12.7 3.3 29 4.8 0.2 3.9 3 1 1 4 4 4 0 Bacterial Alpha-2-macroglobulin MG10 domain Internalin_N PF12354.8 gi|20089832|ref|NP_615907.1| - 0.15 12.2 3.7 11 6.2 0.0 3.0 3 0 0 3 3 3 0 Bacterial adhesion/invasion protein N terminal FeoB_associated PF12669.7 gi|20089832|ref|NP_615907.1| - 1.2 9.6 2.9 2.7 8.5 2.9 1.5 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein QRPTase_C PF01729.19 gi|20089833|ref|NP_615908.1| - 1.2e-58 197.6 1.1 1.4e-58 197.4 1.1 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|20089833|ref|NP_615908.1| - 4.9e-23 81.0 0.0 1.1e-22 79.9 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|20089833|ref|NP_615908.1| - 0.041 13.3 0.0 0.091 12.1 0.0 1.6 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|20089833|ref|NP_615908.1| - 0.077 12.3 0.2 0.15 11.4 0.2 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase PTPS PF01242.19 gi|20089834|ref|NP_615909.1| - 1.6e-37 128.2 0.2 1.7e-37 128.1 0.2 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Disaggr_repeat PF06848.11 gi|20089835|ref|NP_615910.1| - 5.5e-268 879.8 31.4 2.3e-90 301.1 7.2 3.3 3 0 0 3 3 3 3 Disaggregatase related repeat S-layer PF07752.11 gi|20089835|ref|NP_615910.1| - 7.8e-41 139.8 5.0 1.7e-40 138.7 5.0 1.5 1 0 0 1 1 1 1 S-layer protein PKD PF00801.20 gi|20089835|ref|NP_615910.1| - 3.5e-16 58.8 10.2 1.9e-15 56.5 8.0 3.3 2 0 0 2 2 2 1 PKD domain TGFb_propeptide PF00688.18 gi|20089835|ref|NP_615910.1| - 6.8e-08 32.5 0.0 7.1 6.3 0.0 5.9 6 0 0 6 6 6 2 TGF-beta propeptide DUF3466 PF11949.8 gi|20089835|ref|NP_615910.1| - 7.3e-05 21.6 27.6 0.025 13.2 0.4 6.9 3 2 4 7 7 7 3 Protein of unknown function (DUF3466) DUF3203 PF11462.8 gi|20089835|ref|NP_615910.1| - 0.13 12.5 0.0 0.4 10.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) CUE PF02845.16 gi|20089835|ref|NP_615910.1| - 0.16 11.7 0.1 1 9.2 0.0 2.1 2 0 0 2 2 2 0 CUE domain THDPS_M PF14789.6 gi|20089835|ref|NP_615910.1| - 0.96 9.6 13.2 16 5.7 0.5 3.6 3 0 0 3 3 3 0 Tetrahydrodipicolinate N-succinyltransferase middle DUF108 PF01958.18 gi|20089836|ref|NP_615911.1| - 4.5e-38 129.5 0.3 7e-38 128.9 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|20089836|ref|NP_615911.1| - 6.9e-28 97.7 0.0 1.1e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|20089836|ref|NP_615911.1| - 5.9e-06 27.1 0.0 1.2e-05 26.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|20089836|ref|NP_615911.1| - 2.2e-05 24.9 0.0 3.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20089836|ref|NP_615911.1| - 0.026 15.1 0.1 0.06 13.9 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Peptidase_M42 PF05343.14 gi|20089836|ref|NP_615911.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase NadA PF02445.16 gi|20089837|ref|NP_615912.1| - 2.3e-117 391.5 4.0 2.6e-117 391.3 4.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein UbiA PF01040.18 gi|20089839|ref|NP_615914.1| - 7.5e-44 149.9 15.7 1e-43 149.5 15.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family AdoMet_Synthase PF01941.19 gi|20089840|ref|NP_615915.1| - 1e-164 548.1 0.1 1.2e-164 547.9 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) PIN_5 PF08745.11 gi|20089841|ref|NP_615916.1| - 2.9e-92 307.8 0.1 3.3e-92 307.6 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease zf-CHY PF05495.12 gi|20089842|ref|NP_615917.1| - 0.016 15.7 3.3 10 6.7 0.1 3.1 3 0 0 3 3 3 0 CHY zinc finger zf_UBZ PF18439.1 gi|20089842|ref|NP_615917.1| - 0.02 14.4 6.2 0.28 10.8 0.2 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|20089842|ref|NP_615917.1| - 0.029 14.4 5.2 2.3 8.3 5.2 2.8 1 1 0 1 1 1 0 Double zinc ribbon zf_C2H2_13 PF18508.1 gi|20089842|ref|NP_615917.1| - 0.031 13.9 2.6 1.4 8.5 0.9 2.7 2 0 0 2 2 2 0 Zinc finger domain DUF4428 PF14471.6 gi|20089842|ref|NP_615917.1| - 0.045 13.7 0.2 0.045 13.7 0.2 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4428) A2L_zn_ribbon PF08792.10 gi|20089842|ref|NP_615917.1| - 0.064 13.0 8.0 4.8 7.0 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-CCHC_2 PF13696.6 gi|20089842|ref|NP_615917.1| - 0.071 12.9 6.4 1 9.2 0.1 3.2 3 0 0 3 3 3 0 Zinc knuckle zf-RING_5 PF14634.6 gi|20089842|ref|NP_615917.1| - 0.76 9.8 8.9 6.5 6.8 1.4 3.3 3 0 0 3 3 3 0 zinc-RING finger domain DUF2039 PF10217.9 gi|20089842|ref|NP_615917.1| - 1.1 9.6 6.0 1.1 9.6 3.2 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) ADD_ATRX PF17981.1 gi|20089842|ref|NP_615917.1| - 1.6 8.7 4.7 6.2 6.8 0.0 3.2 4 0 0 4 4 4 0 Cysteine Rich ADD domain PhnA_Zn_Ribbon PF08274.12 gi|20089842|ref|NP_615917.1| - 2.3 8.3 6.9 6.2 6.9 0.1 3.2 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|20089842|ref|NP_615917.1| - 4.4 7.1 10.5 3.4 7.5 0.3 3.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-dskA_traR PF01258.17 gi|20089842|ref|NP_615917.1| - 6.6 6.8 11.0 7.8 6.5 0.1 4.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger Thioredoxin PF00085.20 gi|20089843|ref|NP_615918.1| - 1.1e-21 76.7 0.0 1.3e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|20089843|ref|NP_615918.1| - 3.4e-10 40.3 0.5 2.2e-09 37.7 0.5 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|20089843|ref|NP_615918.1| - 3.2e-05 23.9 0.0 5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|20089843|ref|NP_615918.1| - 4e-05 23.5 0.0 5.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family TraF PF13728.6 gi|20089843|ref|NP_615918.1| - 5.6e-05 23.1 0.0 7.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|20089843|ref|NP_615918.1| - 6.1e-05 23.1 0.0 7.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DSBA PF01323.20 gi|20089843|ref|NP_615918.1| - 0.00048 20.0 1.1 0.095 12.5 0.3 2.2 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|20089843|ref|NP_615918.1| - 0.00056 20.1 0.9 0.028 14.6 0.6 2.1 1 1 1 2 2 2 1 Thioredoxin Redoxin PF08534.10 gi|20089843|ref|NP_615918.1| - 0.0011 18.7 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin Glutaredoxin PF00462.24 gi|20089843|ref|NP_615918.1| - 0.0019 18.4 0.1 0.0028 17.8 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin OST3_OST6 PF04756.13 gi|20089843|ref|NP_615918.1| - 0.051 12.9 0.0 0.055 12.8 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|20089843|ref|NP_615918.1| - 0.059 13.7 0.0 0.2 12.0 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin-like Zn_Tnp_IS1595 PF12760.7 gi|20089843|ref|NP_615918.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Thioredoxin_5 PF13743.6 gi|20089843|ref|NP_615918.1| - 0.1 12.3 0.2 1.1 8.9 0.2 2.0 1 1 1 2 2 2 0 Thioredoxin UPF0014 PF03649.13 gi|20089844|ref|NP_615919.1| - 2.1e-19 69.9 0.2 2.1e-19 69.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) DS PF01916.17 gi|20089845|ref|NP_615920.1| - 1.2e-102 343.1 0.0 1.3e-102 342.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.24 gi|20089846|ref|NP_615921.1| - 2.6e-41 141.7 0.6 3.4e-41 141.3 0.6 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|20089846|ref|NP_615921.1| - 0.013 14.7 1.9 2.1 7.5 0.0 2.7 3 1 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|20089846|ref|NP_615921.1| - 0.025 14.1 0.4 0.95 8.9 0.1 2.3 1 1 1 2 2 2 0 PcrB family Ribul_P_3_epim PF00834.19 gi|20089846|ref|NP_615921.1| - 0.18 11.2 0.3 12 5.2 0.2 2.1 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family HisKA_2 PF07568.12 gi|20089847|ref|NP_615922.1| - 4.9e-29 100.2 2.0 4.9e-29 100.2 2.0 3.6 3 0 0 3 3 3 1 Histidine kinase PAS_9 PF13426.7 gi|20089847|ref|NP_615922.1| - 4.9e-19 68.5 0.0 7.2e-15 55.1 0.0 4.6 4 0 0 4 4 4 1 PAS domain PAS PF00989.25 gi|20089847|ref|NP_615922.1| - 7.6e-18 64.6 0.0 1.7e-15 57.0 0.0 3.6 3 1 0 3 3 3 1 PAS fold PAS_4 PF08448.10 gi|20089847|ref|NP_615922.1| - 1.9e-13 50.6 0.0 9.8e-09 35.4 0.0 3.6 3 0 0 3 3 3 2 PAS fold GAF PF01590.26 gi|20089847|ref|NP_615922.1| - 2.2e-11 44.5 0.0 9.3e-11 42.5 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|20089847|ref|NP_615922.1| - 9e-11 41.6 0.0 3.5e-05 23.7 0.0 4.3 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.26 gi|20089847|ref|NP_615922.1| - 3.4e-10 40.4 0.7 2.7e-09 37.5 0.2 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|20089847|ref|NP_615922.1| - 1.1e-08 35.5 0.2 2.5e-08 34.3 0.2 1.7 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|20089847|ref|NP_615922.1| - 3.3e-07 30.5 0.0 2e-06 28.0 0.0 2.4 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|20089847|ref|NP_615922.1| - 0.0034 17.3 0.0 0.0088 16.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20089847|ref|NP_615922.1| - 0.0073 17.0 0.7 0.045 14.5 0.1 2.7 2 0 0 2 2 2 1 HWE histidine kinase PAS_12 PF18095.1 gi|20089847|ref|NP_615922.1| - 0.059 13.0 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain Sigma_reg_C PF13791.6 gi|20089847|ref|NP_615922.1| - 0.096 12.9 0.1 22 5.2 0.0 2.7 2 0 0 2 2 2 0 Sigma factor regulator C-terminal SPOB_a PF14689.6 gi|20089847|ref|NP_615922.1| - 0.098 12.4 0.3 0.27 11.0 0.3 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1635 PF07795.11 gi|20089847|ref|NP_615922.1| - 0.78 9.6 5.2 1.5 8.6 5.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) PIN_8 PF18476.1 gi|20089847|ref|NP_615922.1| - 6.4 6.6 11.6 1.4 8.8 7.6 1.8 2 0 0 2 2 2 0 PIN like domain FUR PF01475.19 gi|20089848|ref|NP_615923.1| - 5.7e-28 97.5 0.0 6.8e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_11 PF08279.12 gi|20089848|ref|NP_615923.1| - 0.016 15.2 0.0 0.52 10.3 0.0 2.3 2 0 0 2 2 2 0 HTH domain DUF2670 PF10875.8 gi|20089848|ref|NP_615923.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2670) Zn_clus PF00172.18 gi|20089848|ref|NP_615923.1| - 7.7 6.7 10.3 20 5.4 5.7 2.2 2 0 0 2 2 2 0 Fungal Zn(2)-Cys(6) binuclear cluster domain peroxidase PF00141.23 gi|20089849|ref|NP_615924.1| - 7e-87 290.9 0.0 8e-45 153.3 0.0 2.2 2 0 0 2 2 2 2 Peroxidase GST_C_3 PF14497.6 gi|20089849|ref|NP_615924.1| - 0.17 12.1 0.0 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain MULE PF10551.9 gi|20089850|ref|NP_615925.1| - 6.1e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20089850|ref|NP_615925.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20089850|ref|NP_615925.1| - 0.023 14.7 0.2 0.063 13.3 0.1 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF659 PF04937.15 gi|20089850|ref|NP_615925.1| - 0.025 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20089850|ref|NP_615925.1| - 0.043 13.6 0.9 0.12 12.3 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20089850|ref|NP_615925.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20089850|ref|NP_615925.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20089850|ref|NP_615925.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20089850|ref|NP_615925.1| - 0.2 11.7 3.5 0.44 10.6 3.5 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20089850|ref|NP_615925.1| - 0.24 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20089850|ref|NP_615925.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger NiFeSe_Hases PF00374.19 gi|20089852|ref|NP_615927.1| - 1.1e-31 110.3 13.5 3.3e-15 56.0 0.4 5.0 2 2 1 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|20089852|ref|NP_615927.1| - 0.018 14.2 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HycI PF01750.18 gi|20089853|ref|NP_615928.1| - 5.6e-35 120.0 0.0 6.6e-35 119.8 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.22 gi|20089854|ref|NP_615929.1| - 2.5e-28 98.5 0.1 2.5e-28 98.5 0.1 2.2 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|20089854|ref|NP_615929.1| - 1.3e-12 46.9 15.8 7.2e-08 31.9 3.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089854|ref|NP_615929.1| - 2.2e-07 30.9 21.6 7.5e-07 29.2 9.9 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089854|ref|NP_615929.1| - 4.4e-07 29.9 16.4 2.1e-06 27.8 11.1 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089854|ref|NP_615929.1| - 7.3e-07 29.0 17.7 6e-05 22.9 2.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20089854|ref|NP_615929.1| - 9.5e-07 29.7 10.3 0.0014 19.5 1.2 3.2 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20089854|ref|NP_615929.1| - 1.1e-06 29.1 10.8 1.1e-06 29.1 10.8 2.9 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20089854|ref|NP_615929.1| - 1.4e-06 28.3 9.1 0.0029 17.7 1.0 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089854|ref|NP_615929.1| - 6.4e-06 26.0 17.0 0.0027 17.7 3.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20089854|ref|NP_615929.1| - 7e-06 26.2 18.1 0.0046 17.4 3.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20089854|ref|NP_615929.1| - 0.0058 17.1 16.4 0.12 12.9 1.7 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089854|ref|NP_615929.1| - 0.022 15.3 14.1 0.3 11.6 1.2 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|20089854|ref|NP_615929.1| - 0.039 14.4 19.6 0.21 12.0 12.5 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089854|ref|NP_615929.1| - 0.09 13.8 6.3 0.09 13.8 6.3 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20089854|ref|NP_615929.1| - 0.51 11.2 16.9 0.41 11.5 3.4 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20089854|ref|NP_615929.1| - 0.93 9.7 7.7 4.7 7.4 7.7 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20089854|ref|NP_615929.1| - 8.9 7.1 15.3 2.9 8.7 2.9 3.3 3 2 0 3 3 3 0 4Fe-4S single cluster domain FrhB_FdhB_C PF04432.13 gi|20089855|ref|NP_615930.1| - 8.3e-40 136.1 0.1 1.5e-39 135.3 0.0 1.4 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|20089855|ref|NP_615930.1| - 2.6e-28 98.0 0.0 4.2e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Piwi PF02171.17 gi|20089856|ref|NP_615931.1| - 0.0014 17.9 0.0 0.0023 17.2 0.0 1.3 1 0 0 1 1 1 1 Piwi domain Ins134_P3_kin_N PF17927.1 gi|20089856|ref|NP_615931.1| - 0.11 13.0 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain ATE_N PF04376.13 gi|20089857|ref|NP_615932.1| - 0.0082 16.5 0.0 0.018 15.5 0.0 1.5 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, N terminus TraF PF13728.6 gi|20089857|ref|NP_615932.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 F plasmid transfer operon protein ParE_toxin PF05016.15 gi|20089858|ref|NP_615933.1| - 1.3e-06 28.9 0.1 1.5e-06 28.7 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE HLH PF00010.26 gi|20089858|ref|NP_615933.1| - 0.0011 18.9 0.0 0.0011 18.8 0.0 1.3 1 1 0 1 1 1 1 Helix-loop-helix DNA-binding domain Gp49 PF05973.14 gi|20089858|ref|NP_615933.1| - 0.017 15.3 0.1 0.019 15.1 0.1 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) HigB_toxin PF09907.9 gi|20089858|ref|NP_615933.1| - 0.055 13.7 0.0 0.067 13.4 0.0 1.3 1 0 0 1 1 1 0 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system tify PF06200.14 gi|20089858|ref|NP_615933.1| - 0.17 11.2 0.1 1.1 8.6 0.0 2.0 2 0 0 2 2 2 0 tify domain PIN PF01850.21 gi|20089859|ref|NP_615934.1| - 5.9e-15 55.8 0.3 6.9e-15 55.6 0.3 1.0 1 0 0 1 1 1 1 PIN domain SUV3_C PF12513.8 gi|20089860|ref|NP_615935.1| - 0.36 10.8 1.9 0.93 9.5 0.2 2.2 2 0 0 2 2 2 0 Mitochondrial degradasome RNA helicase subunit C terminal DDE_Tnp_1 PF01609.21 gi|20089861|ref|NP_615936.1| - 1.2e-08 34.9 0.8 1.8e-08 34.3 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain HTH_12 PF08461.10 gi|20089861|ref|NP_615936.1| - 0.015 15.2 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF3931 PF13082.6 gi|20089861|ref|NP_615936.1| - 0.041 14.1 0.9 0.24 11.6 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3931) Phage_GP20 PF06810.11 gi|20089861|ref|NP_615936.1| - 0.099 12.4 1.9 2.1 8.1 0.3 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 Stevor PF17410.2 gi|20089862|ref|NP_615937.1| - 0.0079 15.8 0.2 0.0079 15.8 0.2 1.7 2 0 0 2 2 2 1 Subtelomeric Variable Open Reading frame RIFIN PF02009.16 gi|20089862|ref|NP_615937.1| - 0.03 14.2 0.2 0.03 14.2 0.2 1.4 2 0 0 2 2 2 0 Rifin TMEM154 PF15102.6 gi|20089862|ref|NP_615937.1| - 0.076 12.9 0.9 0.079 12.9 0.0 1.5 2 0 0 2 2 2 0 TMEM154 protein family CBP_BcsF PF11120.8 gi|20089862|ref|NP_615937.1| - 0.84 9.8 3.7 0.24 11.6 0.8 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF DUF2070 PF09843.9 gi|20089862|ref|NP_615937.1| - 2.5 6.3 11.6 2.9 6.1 11.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF3810 PF12725.7 gi|20089862|ref|NP_615937.1| - 2.6 7.3 11.7 0.8 9.0 9.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) zf-CDGSH PF09360.10 gi|20089863|ref|NP_615938.1| - 8e-39 131.6 2.2 1.5e-19 70.0 0.2 2.6 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|20089863|ref|NP_615938.1| - 1e-13 51.2 0.0 3.3e-13 49.5 0.0 1.9 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-UBR PF02207.20 gi|20089863|ref|NP_615938.1| - 0.048 13.8 3.3 4.6 7.5 0.5 2.5 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Peptidase_M50 PF02163.22 gi|20089864|ref|NP_615939.1| - 6.3e-09 35.5 12.5 5.1e-05 22.7 0.5 3.2 1 1 1 2 2 2 2 Peptidase family M50 CrgA PF06781.12 gi|20089864|ref|NP_615939.1| - 1.1 9.4 6.1 3.7 7.7 2.5 2.8 2 1 0 2 2 2 0 Cell division protein CrgA CxxCxxCC PF03692.15 gi|20089865|ref|NP_615940.1| - 9.7e-09 35.8 6.0 1.4e-08 35.3 5.7 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TelA PF05816.11 gi|20089865|ref|NP_615940.1| - 0.071 12.2 0.5 0.12 11.4 0.1 1.5 2 0 0 2 2 2 0 Toxic anion resistance protein (TelA) GyrI-like PF06445.15 gi|20089866|ref|NP_615941.1| - 4.3e-25 88.8 0.1 6.3e-25 88.3 0.1 1.3 1 0 0 1 1 1 1 GyrI-like small molecule binding domain MerR_1 PF13411.6 gi|20089866|ref|NP_615941.1| - 7.4e-11 42.0 0.0 1.3e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein Cass2 PF14526.6 gi|20089866|ref|NP_615941.1| - 6.1e-08 33.0 0.1 1.2e-07 32.0 0.1 1.5 1 0 0 1 1 1 1 Integron-associated effector binding protein MerR PF00376.23 gi|20089866|ref|NP_615941.1| - 2e-07 30.7 0.2 3.4e-07 29.9 0.2 1.4 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 gi|20089866|ref|NP_615941.1| - 0.00035 21.1 0.1 0.00066 20.2 0.1 1.5 1 0 0 1 1 1 1 MerR, DNA binding Polysacc_deac_1 PF01522.21 gi|20089867|ref|NP_615942.1| - 1.6e-28 99.1 0.0 2.3e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|20089867|ref|NP_615942.1| - 0.00011 21.6 0.0 0.00037 19.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 SnoaL_2 PF12680.7 gi|20089868|ref|NP_615943.1| - 1.9e-07 31.7 0.0 2.3e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF302 PF03625.14 gi|20089869|ref|NP_615944.1| - 3.9e-05 23.5 0.0 6.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 Abhydrolase_1 PF00561.20 gi|20089870|ref|NP_615945.1| - 1.7e-27 96.7 0.0 6e-26 91.6 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|20089870|ref|NP_615945.1| - 7.1e-27 94.2 0.0 2e-26 92.7 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|20089870|ref|NP_615945.1| - 3.8e-21 76.7 0.0 4.4e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|20089870|ref|NP_615945.1| - 1.6e-08 34.3 0.1 2.7e-05 23.7 0.0 2.3 2 0 0 2 2 2 2 Prolyl oligopeptidase family DUF915 PF06028.11 gi|20089870|ref|NP_615945.1| - 0.00019 20.9 0.0 0.00039 19.8 0.0 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) DLH PF01738.18 gi|20089870|ref|NP_615945.1| - 0.00061 19.4 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.7 gi|20089870|ref|NP_615945.1| - 0.0023 17.7 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|20089870|ref|NP_615945.1| - 0.0028 17.6 0.0 0.057 13.3 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase Abhydrolase_2 PF02230.16 gi|20089870|ref|NP_615945.1| - 0.0039 17.0 0.0 0.011 15.5 0.0 1.7 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.18 gi|20089870|ref|NP_615945.1| - 0.0097 15.5 0.0 0.94 9.0 0.0 2.3 2 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Ndr PF03096.14 gi|20089870|ref|NP_615945.1| - 0.021 13.5 0.0 0.45 9.2 0.0 2.0 2 0 0 2 2 2 0 Ndr family DUF1749 PF08538.10 gi|20089870|ref|NP_615945.1| - 0.14 11.2 0.0 0.33 10.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) Abhydrolase_1 PF00561.20 gi|20089871|ref|NP_615946.1| - 0.15 11.6 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold AAA_15 PF13175.6 gi|20089872|ref|NP_615947.1| - 4.4e-16 59.6 2.6 2e-08 34.4 0.1 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|20089872|ref|NP_615947.1| - 1.8e-15 57.5 3.1 2.9e-08 33.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089872|ref|NP_615947.1| - 1.3e-12 47.7 0.2 6.5e-07 29.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20089872|ref|NP_615947.1| - 6e-10 39.9 0.4 9.2e-10 39.3 0.4 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089872|ref|NP_615947.1| - 2.2e-06 27.3 0.0 4e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|20089872|ref|NP_615947.1| - 3e-05 24.6 0.2 0.0001 22.9 0.2 1.9 1 1 0 1 1 1 1 ABC transporter DUF2075 PF09848.9 gi|20089872|ref|NP_615947.1| - 0.0027 17.0 0.0 0.0043 16.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|20089872|ref|NP_615947.1| - 0.0034 17.7 0.0 0.02 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|20089872|ref|NP_615947.1| - 0.0045 16.6 0.1 0.0072 15.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|20089872|ref|NP_615947.1| - 0.0052 16.7 0.0 0.017 15.0 0.0 1.8 2 0 0 2 2 2 1 NACHT domain ABC_ATPase PF09818.9 gi|20089872|ref|NP_615947.1| - 0.007 15.2 0.0 0.011 14.6 0.0 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_7 PF12775.7 gi|20089872|ref|NP_615947.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|20089872|ref|NP_615947.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|20089872|ref|NP_615947.1| - 0.023 15.1 0.0 0.034 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|20089872|ref|NP_615947.1| - 0.029 14.4 0.0 0.068 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|20089872|ref|NP_615947.1| - 0.035 13.4 0.0 0.094 12.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 gi|20089872|ref|NP_615947.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 1 0 RsgA GTPase DUF2813 PF11398.8 gi|20089872|ref|NP_615947.1| - 0.067 12.4 0.1 0.17 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) Sigma54_activ_2 PF14532.6 gi|20089872|ref|NP_615947.1| - 0.091 12.9 0.0 8.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|20089872|ref|NP_615947.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 gi|20089872|ref|NP_615947.1| - 0.14 12.0 0.0 0.48 10.3 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 FtsK_SpoIIIE PF01580.18 gi|20089872|ref|NP_615947.1| - 0.17 11.2 0.0 0.56 9.5 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family Methyltransf_11 PF08241.12 gi|20089873|ref|NP_615948.1| - 3.2e-17 63.0 0.0 5e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089873|ref|NP_615948.1| - 2.1e-16 60.2 0.0 2.7e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089873|ref|NP_615948.1| - 2.9e-16 59.9 0.1 4.5e-16 59.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089873|ref|NP_615948.1| - 1e-15 57.8 0.1 1.3e-15 57.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089873|ref|NP_615948.1| - 1.1e-11 45.3 0.1 2.1e-11 44.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20089873|ref|NP_615948.1| - 2.8e-08 33.5 0.1 4.2e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|20089873|ref|NP_615948.1| - 2.1e-06 27.4 0.0 3.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|20089873|ref|NP_615948.1| - 2.6e-06 27.0 0.1 3.3e-06 26.6 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|20089873|ref|NP_615948.1| - 5.2e-06 25.9 0.0 8e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|20089873|ref|NP_615948.1| - 1.3e-05 24.3 0.0 1.9e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.11 gi|20089873|ref|NP_615948.1| - 0.00016 21.4 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|20089873|ref|NP_615948.1| - 0.00017 21.1 0.9 0.00024 20.6 0.9 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.19 gi|20089873|ref|NP_615948.1| - 0.0013 18.9 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|20089873|ref|NP_615948.1| - 0.0027 17.5 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|20089873|ref|NP_615948.1| - 0.0056 16.3 0.1 0.011 15.4 0.1 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|20089873|ref|NP_615948.1| - 0.028 14.0 0.4 0.04 13.5 0.4 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DREV PF05219.12 gi|20089873|ref|NP_615948.1| - 0.045 12.9 0.1 0.11 11.5 0.1 1.6 1 1 0 1 1 1 0 DREV methyltransferase NNMT_PNMT_TEMT PF01234.17 gi|20089873|ref|NP_615948.1| - 0.045 12.9 0.0 0.58 9.3 0.0 2.3 3 0 0 3 3 3 0 NNMT/PNMT/TEMT family MIT_LIKE_ACTX PF17556.2 gi|20089873|ref|NP_615948.1| - 0.05 14.2 0.2 0.096 13.3 0.2 1.4 1 0 0 1 1 1 0 MIT-like atracotoxin family Pox_MCEL PF03291.16 gi|20089873|ref|NP_615948.1| - 0.05 12.7 1.3 0.39 9.8 1.3 2.1 1 1 0 1 1 1 0 mRNA capping enzyme TPMT PF05724.11 gi|20089873|ref|NP_615948.1| - 0.095 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_4 PF02390.17 gi|20089873|ref|NP_615948.1| - 0.12 11.9 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_16 PF10294.9 gi|20089873|ref|NP_615948.1| - 0.15 11.8 0.3 0.26 11.0 0.3 1.4 1 1 0 1 1 1 0 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|20089875|ref|NP_615950.1| - 2.7e-24 85.7 0.0 6.8e-24 84.4 0.0 1.6 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089875|ref|NP_615950.1| - 5.2e-13 49.5 0.0 9.1e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089875|ref|NP_615950.1| - 3e-12 47.0 0.0 5.7e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089875|ref|NP_615950.1| - 1.3e-11 45.1 0.0 2.2e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089875|ref|NP_615950.1| - 4.5e-11 42.8 0.0 9.7e-11 41.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20089875|ref|NP_615950.1| - 9.7e-07 28.4 0.0 1.4e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|20089875|ref|NP_615950.1| - 8.8e-06 25.8 0.0 1.4e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20089875|ref|NP_615950.1| - 2.4e-05 23.9 0.0 4.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|20089875|ref|NP_615950.1| - 0.00017 21.4 0.0 0.0007 19.4 0.0 2.0 2 1 1 3 3 3 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|20089875|ref|NP_615950.1| - 0.0016 17.5 0.0 0.0023 16.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.14 gi|20089875|ref|NP_615950.1| - 0.0018 17.7 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB GCD14 PF08704.10 gi|20089875|ref|NP_615950.1| - 0.0019 17.9 0.0 0.0037 17.0 0.0 1.5 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.13 gi|20089875|ref|NP_615950.1| - 0.027 13.8 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.12 gi|20089875|ref|NP_615950.1| - 0.08 12.0 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase ICMT PF04140.14 gi|20089876|ref|NP_615951.1| - 1.7e-12 47.6 0.3 3.7e-12 46.5 0.1 1.7 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 gi|20089876|ref|NP_615951.1| - 2.8e-12 47.0 0.4 2.8e-12 47.0 0.4 2.1 3 0 0 3 3 3 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|20089876|ref|NP_615951.1| - 1.3e-06 28.1 1.0 2.2e-06 27.4 1.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) Steroid_dh PF02544.16 gi|20089876|ref|NP_615951.1| - 0.0033 17.4 2.4 0.0034 17.4 1.6 1.5 1 1 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1345 PF07077.11 gi|20089876|ref|NP_615951.1| - 0.011 15.5 2.0 0.018 14.7 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) DUF1772 PF08592.11 gi|20089876|ref|NP_615951.1| - 0.013 15.8 0.9 0.25 11.7 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) DUF3792 PF12670.7 gi|20089876|ref|NP_615951.1| - 0.083 13.0 0.8 0.083 13.0 0.8 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3792) ERG4_ERG24 PF01222.17 gi|20089876|ref|NP_615951.1| - 0.11 11.2 3.9 0.083 11.6 0.6 2.0 1 1 1 2 2 2 0 Ergosterol biosynthesis ERG4/ERG24 family FA_desaturase PF00487.24 gi|20089876|ref|NP_615951.1| - 0.3 10.9 1.9 0.3 10.9 0.6 1.5 1 1 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.9 gi|20089876|ref|NP_615951.1| - 9.3 4.9 7.3 1.5e+02 0.9 7.3 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Lyase_1 PF00206.20 gi|20089877|ref|NP_615952.1| - 1.5e-100 336.6 0.0 1.9e-100 336.3 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|20089877|ref|NP_615952.1| - 9e-22 77.2 0.0 5.1e-21 74.8 0.0 2.3 2 0 0 2 2 2 1 Fumarase C C-terminus Malic_M PF03949.15 gi|20089878|ref|NP_615953.1| - 1.7e-24 86.5 0.0 1.9e-24 86.3 0.0 1.0 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain Oxidored_FMN PF00724.20 gi|20089879|ref|NP_615954.1| - 1.8e-82 277.4 0.0 2.1e-82 277.2 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family DUF5552 PF17706.1 gi|20089879|ref|NP_615954.1| - 0.16 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5552) PTPlike_phytase PF14566.6 gi|20089880|ref|NP_615955.1| - 0.053 13.6 0.0 13 5.8 0.0 2.2 2 0 0 2 2 2 0 Inositol hexakisphosphate FUR PF01475.19 gi|20089881|ref|NP_615956.1| - 9e-31 106.5 0.2 9e-31 106.5 0.2 1.3 1 1 1 2 2 2 1 Ferric uptake regulator family Penicillinase_R PF03965.16 gi|20089881|ref|NP_615956.1| - 0.00053 20.3 0.0 0.00071 19.9 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor PadR PF03551.14 gi|20089881|ref|NP_615956.1| - 0.0033 17.4 0.1 0.0075 16.2 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|20089881|ref|NP_615956.1| - 0.008 16.2 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20089881|ref|NP_615956.1| - 0.0099 15.7 0.0 0.13 12.1 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|20089881|ref|NP_615956.1| - 0.018 14.8 0.0 0.097 12.5 0.0 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain Prok-RING_4 PF14447.6 gi|20089881|ref|NP_615956.1| - 0.028 14.3 1.7 0.057 13.3 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF2250 PF10007.9 gi|20089881|ref|NP_615956.1| - 0.029 14.5 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|20089881|ref|NP_615956.1| - 0.049 13.6 0.0 0.34 10.9 0.1 2.1 2 0 0 2 2 2 0 HTH domain LexA_DNA_bind PF01726.16 gi|20089881|ref|NP_615956.1| - 0.054 13.3 0.0 0.098 12.4 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.7 gi|20089881|ref|NP_615956.1| - 0.054 13.4 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 MarR family Rubredoxin_2 PF18073.1 gi|20089881|ref|NP_615956.1| - 0.064 13.0 0.6 2.5 7.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TrmB PF01978.19 gi|20089881|ref|NP_615956.1| - 0.066 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|20089881|ref|NP_615956.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|20089881|ref|NP_615956.1| - 0.14 11.8 0.0 0.95 9.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Cyt_bd_oxida_I PF01654.17 gi|20089882|ref|NP_615957.1| - 2.4e-155 517.3 29.6 2.8e-155 517.1 29.6 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 gi|20089883|ref|NP_615958.1| - 3.3e-80 269.7 37.3 3.8e-80 269.5 37.3 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II eRF1_2 PF03464.15 gi|20089884|ref|NP_615959.1| - 2.1e-38 131.6 0.0 3.9e-38 130.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|20089884|ref|NP_615959.1| - 1.4e-27 96.4 0.3 3.3e-27 95.2 0.1 1.7 2 0 0 2 2 2 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|20089884|ref|NP_615959.1| - 5e-12 46.2 0.0 8.8e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|20089884|ref|NP_615959.1| - 2.3e-08 34.4 0.0 4e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|20089884|ref|NP_615959.1| - 4.4e-08 33.2 0.1 2.3e-07 30.8 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 1 HypA PF01155.19 gi|20089884|ref|NP_615959.1| - 0.0088 16.1 0.1 0.017 15.2 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|20089884|ref|NP_615959.1| - 0.031 14.2 0.8 0.77 9.7 0.1 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.16 gi|20089884|ref|NP_615959.1| - 0.06 13.4 0.8 0.19 11.8 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|20089884|ref|NP_615959.1| - 0.23 11.5 2.8 6.3 7.0 0.6 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|20089884|ref|NP_615959.1| - 2 8.2 3.4 12 5.7 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|20089884|ref|NP_615959.1| - 5 7.3 6.9 0.89 9.7 0.4 2.8 3 0 0 3 3 3 0 Zinc ribbon domain OrfB_IS605 PF01385.19 gi|20089885|ref|NP_615960.1| - 4e-26 91.6 1.3 8e-26 90.6 1.3 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|20089885|ref|NP_615960.1| - 9.7e-23 79.9 0.3 2e-22 78.9 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|20089885|ref|NP_615960.1| - 2.8e-20 71.5 0.5 5.1e-20 70.7 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|20089885|ref|NP_615960.1| - 0.0019 18.3 2.8 0.0032 17.6 1.3 2.0 2 0 0 2 2 2 1 Piccolo Zn-finger DZR PF12773.7 gi|20089885|ref|NP_615960.1| - 0.078 13.0 0.7 0.14 12.2 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|20089885|ref|NP_615960.1| - 0.094 12.7 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|20089885|ref|NP_615960.1| - 0.26 11.4 0.9 0.52 10.5 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.18 gi|20089885|ref|NP_615960.1| - 7.4 6.0 8.3 18 4.8 0.4 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others CdhD PF03599.16 gi|20089886|ref|NP_615961.1| - 3.1e-158 526.5 0.1 3.7e-158 526.3 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|20089886|ref|NP_615961.1| - 6.8e-15 54.4 2.3 1.7e-14 53.1 2.3 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster MOFRL PF05161.13 gi|20089886|ref|NP_615961.1| - 0.021 15.0 0.2 0.048 13.9 0.2 1.5 1 0 0 1 1 1 0 MOFRL family Peripla_BP_4 PF13407.6 gi|20089886|ref|NP_615961.1| - 2.4 7.6 5.8 7.9 6.0 0.1 2.5 2 1 1 3 3 3 0 Periplasmic binding protein domain CdhD PF03599.16 gi|20089887|ref|NP_615962.1| - 3.9e-93 312.2 2.3 8.4e-86 288.1 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CbiA PF01656.23 gi|20089888|ref|NP_615963.1| - 5.3e-09 36.2 0.1 1.7e-08 34.6 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20089888|ref|NP_615963.1| - 4.8e-06 26.6 0.0 9.2e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|20089888|ref|NP_615963.1| - 3.1e-05 23.6 0.1 3.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|20089888|ref|NP_615963.1| - 0.00021 20.9 0.1 0.0004 19.9 0.1 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Toprim PF01751.22 gi|20089888|ref|NP_615963.1| - 0.00045 20.4 0.1 0.0012 19.0 0.0 1.9 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.6 gi|20089888|ref|NP_615963.1| - 0.04 14.4 0.0 0.096 13.2 0.0 1.6 1 0 0 1 1 1 0 Toprim domain HTH_19 PF12844.7 gi|20089888|ref|NP_615963.1| - 0.046 13.8 1.2 0.17 11.9 0.1 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain BORCS6 PF10157.9 gi|20089888|ref|NP_615963.1| - 0.051 13.8 0.2 0.076 13.2 0.2 1.2 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 6 PEPcase_2 PF14010.6 gi|20089888|ref|NP_615963.1| - 0.069 11.6 0.7 0.097 11.2 0.7 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase AAA_26 PF13500.6 gi|20089888|ref|NP_615963.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain CdhC PF03598.15 gi|20089889|ref|NP_615964.1| - 3.2e-61 205.7 0.1 4.8e-61 205.2 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.16 gi|20089890|ref|NP_615965.1| - 8.2e-31 107.0 0.0 9.6e-31 106.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|20089890|ref|NP_615965.1| - 1e-07 31.7 0.0 1.6e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|20089891|ref|NP_615966.1| - 6.1e-107 358.4 3.1 1e-88 298.3 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_21 PF14697.6 gi|20089891|ref|NP_615966.1| - 5.1e-06 26.5 6.7 5.1e-06 26.5 6.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089891|ref|NP_615966.1| - 1.2e-05 25.3 11.3 1.2e-05 25.3 11.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20089891|ref|NP_615966.1| - 1.9e-05 25.2 8.3 1.9e-05 25.2 8.3 2.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20089891|ref|NP_615966.1| - 0.0011 19.4 10.0 0.0011 19.4 10.0 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20089891|ref|NP_615966.1| - 0.0086 15.9 24.8 0.018 14.8 2.3 3.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20089891|ref|NP_615966.1| - 0.012 15.7 4.5 0.012 15.7 4.5 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20089891|ref|NP_615966.1| - 0.018 15.2 8.7 0.12 12.6 0.5 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089891|ref|NP_615966.1| - 0.022 15.2 1.0 0.022 15.2 1.0 3.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20089891|ref|NP_615966.1| - 0.067 13.3 24.3 0.064 13.4 1.8 4.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20089891|ref|NP_615966.1| - 0.77 9.9 25.3 0.032 14.3 14.6 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20089891|ref|NP_615966.1| - 2.6 8.9 14.5 0.15 12.9 0.8 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20089891|ref|NP_615966.1| - 4.4 7.9 12.8 5.7 7.6 2.5 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|20089891|ref|NP_615966.1| - 5.2 7.7 28.7 0.032 14.8 13.6 3.6 2 1 1 3 3 2 0 4Fe-4S dicluster domain DUF134 PF02001.16 gi|20089892|ref|NP_615967.1| - 5.8e-24 84.5 0.0 9.4e-24 83.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|20089892|ref|NP_615967.1| - 2.3e-05 23.9 0.0 3.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|20089892|ref|NP_615967.1| - 0.0012 18.6 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Zn-ribbon_8 PF09723.10 gi|20089892|ref|NP_615967.1| - 0.0015 18.6 0.9 0.0015 18.6 0.9 1.7 2 0 0 2 2 1 1 Zinc ribbon domain HypA PF01155.19 gi|20089892|ref|NP_615967.1| - 0.0017 18.4 1.0 0.0026 17.8 0.8 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_1 PF00126.27 gi|20089892|ref|NP_615967.1| - 0.012 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|20089892|ref|NP_615967.1| - 0.02 14.7 0.1 0.037 13.8 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|20089892|ref|NP_615967.1| - 0.024 14.6 0.1 0.042 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_ECF PF07638.11 gi|20089892|ref|NP_615967.1| - 0.08 12.8 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_8 PF02954.19 gi|20089892|ref|NP_615967.1| - 0.16 11.8 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family zf-ACC PF17848.1 gi|20089892|ref|NP_615967.1| - 2.7 8.1 8.8 2.4 8.3 0.3 3.2 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Gp_dh_C PF02800.20 gi|20089893|ref|NP_615968.1| - 1.5e-26 92.9 0.0 2.1e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|20089893|ref|NP_615968.1| - 7.5e-12 45.5 0.1 2.2e-11 43.9 0.1 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|20089893|ref|NP_615968.1| - 1.3e-07 31.9 0.2 1.1e-06 28.9 0.0 2.4 1 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|20089893|ref|NP_615968.1| - 0.00031 20.2 0.1 0.013 14.9 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|20089893|ref|NP_615968.1| - 0.00047 20.8 0.1 0.0013 19.4 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|20089893|ref|NP_615968.1| - 0.00056 20.2 0.1 0.0014 18.9 0.1 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|20089893|ref|NP_615968.1| - 0.0011 19.7 0.1 0.0024 18.7 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|20089893|ref|NP_615968.1| - 0.0099 16.1 0.1 0.026 14.8 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.24 gi|20089893|ref|NP_615968.1| - 0.019 15.4 0.1 0.063 13.7 0.1 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.12 gi|20089893|ref|NP_615968.1| - 0.068 12.7 1.2 0.66 9.5 0.2 2.5 2 1 1 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|20089893|ref|NP_615968.1| - 0.082 13.5 0.2 0.26 11.9 0.2 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|20089894|ref|NP_615969.1| - 6.2e-49 166.8 0.0 8.1e-49 166.4 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|20089894|ref|NP_615969.1| - 8.3e-16 58.2 0.1 2.2e-15 56.9 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|20089894|ref|NP_615969.1| - 1.2e-14 54.6 1.1 8.3e-12 45.5 0.1 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|20089894|ref|NP_615969.1| - 1.9e-10 40.5 1.1 2.2e-09 37.0 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|20089894|ref|NP_615969.1| - 0.001 17.9 0.1 1 8.0 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|20089894|ref|NP_615969.1| - 0.0024 17.1 0.1 0.0071 15.6 0.0 1.8 2 0 0 2 2 2 1 Thi4 family F420_oxidored PF03807.17 gi|20089894|ref|NP_615969.1| - 0.01 16.4 1.4 5 7.8 0.2 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|20089894|ref|NP_615969.1| - 0.028 13.5 0.3 0.22 10.5 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain DAO PF01266.24 gi|20089894|ref|NP_615969.1| - 0.044 13.4 0.7 2.1 7.8 0.0 2.4 2 0 0 2 2 2 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|20089894|ref|NP_615969.1| - 0.066 13.1 0.1 0.99 9.3 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|20089894|ref|NP_615969.1| - 0.22 11.8 0.6 0.71 10.2 0.2 2.1 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain MS_channel PF00924.18 gi|20089895|ref|NP_615970.1| - 4.3e-24 85.2 1.9 7.6e-24 84.4 1.9 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel CbiA PF01656.23 gi|20089896|ref|NP_615971.1| - 9e-11 41.9 0.0 1.3e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|20089896|ref|NP_615971.1| - 2.7e-05 23.5 1.2 4.3e-05 22.9 0.5 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|20089896|ref|NP_615971.1| - 4.9e-05 22.7 0.2 9.4e-05 21.8 0.2 1.3 1 0 0 1 1 1 1 Zeta toxin Fer4_NifH PF00142.18 gi|20089896|ref|NP_615971.1| - 5.3e-05 22.8 1.5 0.0019 17.7 0.3 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|20089896|ref|NP_615971.1| - 6.3e-05 22.5 0.1 0.00023 20.7 0.2 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|20089896|ref|NP_615971.1| - 0.00014 21.9 0.9 0.0017 18.3 0.4 2.4 2 1 1 3 3 3 1 AAA domain DUF87 PF01935.17 gi|20089896|ref|NP_615971.1| - 0.00039 20.6 0.1 0.00072 19.7 0.1 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_24 PF13479.6 gi|20089896|ref|NP_615971.1| - 0.0004 20.2 0.2 0.0015 18.3 0.1 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|20089896|ref|NP_615971.1| - 0.0015 18.6 0.4 0.034 14.2 0.4 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase CBP_BcsQ PF06564.12 gi|20089896|ref|NP_615971.1| - 0.0018 17.8 0.0 0.17 11.3 0.1 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|20089896|ref|NP_615971.1| - 0.003 17.5 0.1 0.0048 16.8 0.1 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase SRP54 PF00448.22 gi|20089896|ref|NP_615971.1| - 0.0032 17.1 0.5 0.089 12.4 0.2 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|20089896|ref|NP_615971.1| - 0.0037 17.8 0.1 0.006 17.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter CLP1_P PF16575.5 gi|20089896|ref|NP_615971.1| - 0.0059 16.4 0.0 0.018 14.8 0.0 1.8 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_18 PF13238.6 gi|20089896|ref|NP_615971.1| - 0.0077 16.8 0.0 0.017 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain TrkA_N PF02254.18 gi|20089896|ref|NP_615971.1| - 0.014 15.7 0.1 0.54 10.5 0.0 2.6 2 1 0 2 2 2 0 TrkA-N domain AAA_33 PF13671.6 gi|20089896|ref|NP_615971.1| - 0.023 14.9 0.1 0.04 14.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|20089896|ref|NP_615971.1| - 0.06 12.9 0.2 0.31 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|20089896|ref|NP_615971.1| - 0.067 12.6 0.0 0.19 11.1 0.1 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20089896|ref|NP_615971.1| - 0.11 13.0 0.1 0.18 12.2 0.1 1.4 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.6 gi|20089896|ref|NP_615971.1| - 0.11 12.9 0.1 0.24 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain PRK PF00485.18 gi|20089896|ref|NP_615971.1| - 0.13 12.0 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MipZ PF09140.11 gi|20089896|ref|NP_615971.1| - 0.14 11.5 1.0 0.83 8.9 0.2 2.0 2 0 0 2 2 2 0 ATPase MipZ PglD_N PF17836.1 gi|20089896|ref|NP_615971.1| - 0.14 12.8 0.0 0.28 11.8 0.0 1.5 1 0 0 1 1 1 0 PglD N-terminal domain Dynamin_N PF00350.23 gi|20089896|ref|NP_615971.1| - 0.15 12.1 0.4 4.2 7.4 0.4 2.5 1 1 0 1 1 1 0 Dynamin family TPP_enzyme_C PF02775.21 gi|20089897|ref|NP_615972.1| - 1.2e-27 96.6 0.2 2.4e-27 95.6 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|20089897|ref|NP_615972.1| - 3.4e-11 43.3 0.1 1.6e-10 41.2 0.1 2.0 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|20089897|ref|NP_615972.1| - 2.8e-07 30.1 16.9 0.00017 21.2 3.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|20089897|ref|NP_615972.1| - 2.5e-05 24.0 0.1 8e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_21 PF14697.6 gi|20089897|ref|NP_615972.1| - 2.8e-05 24.1 9.7 7.6e-05 22.8 9.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089897|ref|NP_615972.1| - 6.3e-05 23.0 11.7 0.00014 21.9 11.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20089897|ref|NP_615972.1| - 0.00012 22.0 16.6 0.0013 18.7 2.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20089897|ref|NP_615972.1| - 0.00034 20.7 11.5 0.00034 20.7 11.5 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20089897|ref|NP_615972.1| - 0.0022 18.4 12.4 0.24 12.0 3.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089897|ref|NP_615972.1| - 0.0062 17.1 12.9 0.072 13.7 12.5 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089897|ref|NP_615972.1| - 0.012 15.6 18.9 0.11 12.6 3.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Transket_pyr PF02779.24 gi|20089897|ref|NP_615972.1| - 0.02 14.6 0.0 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_15 PF13459.6 gi|20089897|ref|NP_615972.1| - 0.42 11.4 12.2 0.19 12.5 1.4 3.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|20089897|ref|NP_615972.1| - 1 10.3 11.0 1.4 9.9 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain POR PF01558.18 gi|20089898|ref|NP_615973.1| - 1.1e-39 136.4 0.4 1.3e-39 136.1 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Lipoprotein_9 PF03180.14 gi|20089898|ref|NP_615973.1| - 0.11 11.6 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 NLPA lipoprotein DUF4277 PF14104.6 gi|20089899|ref|NP_615974.1| - 1.8e-33 115.1 0.0 2.2e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20089900|ref|NP_615975.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain GPS2_interact PF15784.5 gi|20089900|ref|NP_615975.1| - 0.25 11.8 3.0 0.51 10.8 3.0 1.6 1 0 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain DDE_Tnp_1 PF01609.21 gi|20089901|ref|NP_615976.1| - 0.0002 21.1 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain PP-binding PF00550.25 gi|20089902|ref|NP_615977.1| - 2.3e-06 27.9 0.1 2.9e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 gi|20089902|ref|NP_615977.1| - 0.03 14.5 0.0 0.033 14.4 0.0 1.2 1 0 0 1 1 1 0 Acyl-carrier Sec5 PF15469.6 gi|20089902|ref|NP_615977.1| - 0.032 14.1 0.2 0.036 13.9 0.2 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec5 AMP-binding PF00501.28 gi|20089903|ref|NP_615978.1| - 1.4e-67 228.1 0.0 1.7e-67 227.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|20089903|ref|NP_615978.1| - 2.3e-10 41.3 0.0 5.3e-10 40.1 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain tRNA_Me_trans PF03054.16 gi|20089904|ref|NP_615979.1| - 0.00017 20.5 0.4 0.00057 18.8 0.2 1.8 1 1 1 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|20089904|ref|NP_615979.1| - 0.0044 16.5 0.0 0.0074 15.8 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|20089904|ref|NP_615979.1| - 0.01 15.5 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.17 gi|20089904|ref|NP_615979.1| - 0.019 14.1 0.0 0.028 13.6 0.0 1.2 1 0 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.20 gi|20089904|ref|NP_615979.1| - 0.07 12.9 0.0 0.15 11.8 0.0 1.5 2 0 0 2 2 2 0 PP-loop family NAD_synthase PF02540.17 gi|20089905|ref|NP_615980.1| - 3.6e-50 170.4 0.5 2.7e-30 105.3 0.1 2.1 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|20089905|ref|NP_615980.1| - 0.0076 15.8 0.0 0.61 9.5 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC DUF362 PF04015.12 gi|20089906|ref|NP_615981.1| - 3e-55 187.6 0.1 4e-55 187.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|20089906|ref|NP_615981.1| - 8.8e-09 34.8 12.7 0.00011 21.9 4.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20089906|ref|NP_615981.1| - 2.9e-05 23.9 13.8 0.013 15.5 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20089906|ref|NP_615981.1| - 0.00033 21.2 14.2 0.00086 19.8 14.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20089906|ref|NP_615981.1| - 0.00061 19.8 14.3 0.0015 18.6 1.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20089906|ref|NP_615981.1| - 0.00063 19.8 14.4 0.0016 18.5 14.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20089906|ref|NP_615981.1| - 0.0023 18.0 15.4 0.0047 17.1 15.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20089906|ref|NP_615981.1| - 0.0073 16.8 8.1 0.17 12.4 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20089906|ref|NP_615981.1| - 0.017 15.2 16.3 0.086 13.0 5.9 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Lar_N PF09861.9 gi|20089906|ref|NP_615981.1| - 0.036 13.2 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_16 PF13484.6 gi|20089906|ref|NP_615981.1| - 0.06 14.3 14.9 0.87 10.6 4.3 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain ETF_QO PF05187.13 gi|20089906|ref|NP_615981.1| - 0.6 10.3 9.5 8.2 6.6 0.8 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_4 PF12800.7 gi|20089906|ref|NP_615981.1| - 3 8.6 18.8 5.6 7.7 8.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20089906|ref|NP_615981.1| - 5.2 7.3 11.5 75 3.6 11.5 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20089906|ref|NP_615981.1| - 5.2 8.2 19.7 3.4 8.8 6.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Hexapep PF00132.24 gi|20089907|ref|NP_615982.1| - 1.1e-10 40.8 14.6 1.7e-06 27.5 7.4 3.2 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20089907|ref|NP_615982.1| - 8.2e-07 28.7 17.4 0.00096 18.9 8.1 3.3 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase YdjM PF04307.14 gi|20089908|ref|NP_615983.1| - 1.5e-07 30.9 7.5 4.2e-07 29.4 7.5 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase rve PF00665.26 gi|20089909|ref|NP_615984.1| - 2.3e-13 50.4 0.0 3.5e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20089909|ref|NP_615984.1| - 7.5e-05 22.4 0.1 0.0044 16.8 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20089909|ref|NP_615984.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|20089909|ref|NP_615984.1| - 0.018 14.6 0.0 0.041 13.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|20089909|ref|NP_615984.1| - 0.036 13.5 0.0 0.071 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Lsm_C PF14894.6 gi|20089909|ref|NP_615984.1| - 0.099 12.4 0.2 0.33 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal HTH_36 PF13730.6 gi|20089909|ref|NP_615984.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MULE PF10551.9 gi|20089910|ref|NP_615985.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20089910|ref|NP_615985.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20089910|ref|NP_615985.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20089910|ref|NP_615985.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20089910|ref|NP_615985.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20089910|ref|NP_615985.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20089910|ref|NP_615985.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20089910|ref|NP_615985.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20089910|ref|NP_615985.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20089910|ref|NP_615985.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20089910|ref|NP_615985.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger DDE_Tnp_IS1 PF03400.13 gi|20089912|ref|NP_615987.1| - 2.1e-07 31.4 0.1 0.00025 21.4 0.1 2.2 2 0 0 2 2 2 2 IS1 transposase Disaggr_assoc PF08480.10 gi|20089914|ref|NP_615989.1| - 1e-88 296.2 14.9 1e-88 296.2 14.9 3.0 2 1 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.6 gi|20089914|ref|NP_615989.1| - 1.3e-20 73.9 38.6 3.2e-13 49.8 13.8 3.7 2 1 2 4 4 4 3 Right handed beta helix region NosD PF05048.13 gi|20089914|ref|NP_615989.1| - 2.2e-07 30.4 10.4 2.2e-07 30.4 10.4 3.6 1 1 1 3 3 3 1 Periplasmic copper-binding protein (NosD) DUF5123 PF17161.4 gi|20089914|ref|NP_615989.1| - 0.00031 21.8 2.9 0.00031 21.8 2.9 4.1 1 1 3 4 4 4 1 Domain of unknown function (DUF5123) Disaggr_assoc PF08480.10 gi|20089915|ref|NP_615990.1| - 1.9e-33 115.9 19.7 7.6e-33 114.0 8.8 2.7 2 1 1 3 3 3 3 Disaggregatase related Beta_helix PF13229.6 gi|20089915|ref|NP_615990.1| - 5.2e-24 84.9 52.7 3.8e-13 49.6 17.3 2.9 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|20089915|ref|NP_615990.1| - 6.5e-08 32.1 26.6 3.9e-06 26.3 18.3 3.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|20089915|ref|NP_615990.1| - 4.9e-05 23.3 10.8 7.5e-05 22.7 8.0 2.6 1 1 1 2 2 2 2 Pectate lyase superfamily protein DUF1565 PF07602.11 gi|20089915|ref|NP_615990.1| - 0.00017 21.0 12.6 0.059 12.7 0.5 3.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Hexapep PF00132.24 gi|20089915|ref|NP_615990.1| - 7.4 6.5 8.7 0.91 9.4 0.1 3.3 4 0 0 4 4 4 0 Bacterial transferase hexapeptide (six repeats) DUF4096 PF13340.6 gi|20089916|ref|NP_615991.1| - 1.4e-21 76.5 0.0 1.7e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) BTRD1 PF17660.1 gi|20089916|ref|NP_615991.1| - 0.15 11.9 0.0 0.43 10.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial tandem repeat domain 1 DDE_Tnp_1_6 PF13751.6 gi|20089917|ref|NP_615992.1| - 2.7e-28 98.7 4.2 7.3e-28 97.3 2.8 2.3 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20089917|ref|NP_615992.1| - 1.8e-19 70.3 1.6 5.3e-19 68.7 1.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20089917|ref|NP_615992.1| - 2e-15 56.6 0.0 5.2e-15 55.2 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) RE_XamI PF09572.10 gi|20089917|ref|NP_615992.1| - 0.033 13.9 0.0 0.072 12.8 0.0 1.6 1 0 0 1 1 1 0 XamI restriction endonuclease AhpC-TSA PF00578.21 gi|20089917|ref|NP_615992.1| - 0.061 13.2 0.4 0.12 12.2 0.4 1.5 1 0 0 1 1 1 0 AhpC/TSA family DDE_Tnp_1_2 PF13586.6 gi|20089917|ref|NP_615992.1| - 0.085 13.2 0.2 9.4 6.7 0.0 3.0 3 0 0 3 3 3 0 Transposase DDE domain DDE_Tnp_IS1 PF03400.13 gi|20089918|ref|NP_615993.1| - 2e-12 47.6 0.3 2.2e-12 47.4 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase DUF772 PF05598.11 gi|20089919|ref|NP_615994.1| - 1.8e-14 53.5 0.1 3.2e-14 52.7 0.1 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) FliH PF02108.16 gi|20089919|ref|NP_615994.1| - 0.14 12.3 1.4 0.35 10.9 0.2 2.1 2 0 0 2 2 2 0 Flagellar assembly protein FliH DUF3437 PF11919.8 gi|20089919|ref|NP_615994.1| - 0.17 11.8 0.8 0.7 9.9 0.0 2.4 4 0 0 4 4 4 0 Domain of unknown function (DUF3437) IstB_IS21 PF01695.17 gi|20089920|ref|NP_615995.1| - 7.3e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20089920|ref|NP_615995.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20089920|ref|NP_615995.1| - 1.6e-05 25.3 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20089920|ref|NP_615995.1| - 0.00027 20.7 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20089920|ref|NP_615995.1| - 0.0005 20.3 0.0 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20089920|ref|NP_615995.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20089920|ref|NP_615995.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20089920|ref|NP_615995.1| - 0.0058 16.9 0.2 5.5 7.3 0.0 2.7 1 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|20089920|ref|NP_615995.1| - 0.0061 16.9 0.0 0.02 15.3 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20089920|ref|NP_615995.1| - 0.014 14.8 0.0 0.044 13.2 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20089920|ref|NP_615995.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|20089920|ref|NP_615995.1| - 0.015 14.8 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|20089920|ref|NP_615995.1| - 0.016 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20089920|ref|NP_615995.1| - 0.03 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20089920|ref|NP_615995.1| - 0.082 12.6 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20089920|ref|NP_615995.1| - 0.085 12.6 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AAA_11 PF13086.6 gi|20089920|ref|NP_615995.1| - 0.17 11.6 0.9 8.7 6.0 0.0 2.9 1 1 2 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|20089920|ref|NP_615995.1| - 0.18 12.4 0.4 0.83 10.2 0.0 2.1 3 1 0 3 3 3 0 ABC transporter rve PF00665.26 gi|20089921|ref|NP_615996.1| - 5.1e-19 68.6 0.0 8.4e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20089921|ref|NP_615996.1| - 4.3e-05 23.2 0.0 9.9e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20089922|ref|NP_615997.1| - 2.6e-06 27.4 0.5 6.8e-06 26.1 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|20089922|ref|NP_615997.1| - 3.2e-05 23.6 0.2 7e-05 22.5 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|20089922|ref|NP_615997.1| - 3.6e-05 23.4 0.1 7.5e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|20089922|ref|NP_615997.1| - 0.00084 19.3 0.0 0.0018 18.3 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix HTH_3 PF01381.22 gi|20089922|ref|NP_615997.1| - 0.0043 17.1 0.1 0.0074 16.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_Tnp_Tc3_1 PF11427.8 gi|20089922|ref|NP_615997.1| - 0.0053 16.6 0.0 0.0093 15.8 0.0 1.4 1 0 0 1 1 1 1 Tc3 transposase Sigma70_r4 PF04545.16 gi|20089922|ref|NP_615997.1| - 0.0064 16.0 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|20089922|ref|NP_615997.1| - 0.0065 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.12 gi|20089922|ref|NP_615997.1| - 0.026 14.2 0.1 0.044 13.5 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20089922|ref|NP_615997.1| - 0.028 14.3 0.1 0.048 13.6 0.1 1.3 1 0 0 1 1 1 0 Phage NinH protein HTH_28 PF13518.6 gi|20089922|ref|NP_615997.1| - 0.033 14.3 0.3 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20089922|ref|NP_615997.1| - 0.052 13.1 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|20089922|ref|NP_615997.1| - 0.052 14.0 0.0 0.1 13.1 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|20089922|ref|NP_615997.1| - 0.054 12.5 0.0 0.065 12.2 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_36 PF13730.6 gi|20089922|ref|NP_615997.1| - 0.065 13.2 0.0 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 gi|20089922|ref|NP_615997.1| - 0.076 12.8 0.3 0.17 11.7 0.3 1.6 1 0 0 1 1 1 0 MerR family regulatory protein HTH_IclR PF09339.10 gi|20089922|ref|NP_615997.1| - 0.096 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20089922|ref|NP_615997.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family DDE_Tnp_1_6 PF13751.6 gi|20089923|ref|NP_615998.1| - 7.2e-31 107.0 7.4 9.5e-31 106.6 7.4 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20089923|ref|NP_615998.1| - 0.00043 20.0 1.5 0.00063 19.4 1.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF2800 PF10926.8 gi|20089923|ref|NP_615998.1| - 0.033 13.4 1.9 0.042 13.1 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) Polysacc_synt PF01943.17 gi|20089924|ref|NP_615999.1| - 1.5e-28 100.0 35.8 1.5e-28 100.0 35.8 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|20089924|ref|NP_615999.1| - 2.5e-20 72.9 23.1 2.5e-20 72.9 23.1 2.4 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|20089924|ref|NP_615999.1| - 7.4e-18 64.7 35.6 1.7e-16 60.3 15.7 4.4 3 1 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|20089924|ref|NP_615999.1| - 3.8e-16 59.5 25.6 3.8e-16 59.5 25.6 3.5 3 0 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|20089924|ref|NP_615999.1| - 0.00031 19.5 50.3 0.00031 19.5 50.3 2.1 1 1 1 2 2 2 1 Lipid II flippase MurJ PsbW PF07123.12 gi|20089924|ref|NP_615999.1| - 0.071 13.1 0.8 0.23 11.5 0.8 1.8 1 0 0 1 1 1 0 Photosystem II reaction centre W protein (PsbW) DUF2206 PF09971.9 gi|20089925|ref|NP_616000.1| - 1.1e-101 340.3 35.2 1.1e-101 340.3 35.2 3.8 3 2 1 4 4 4 1 Predicted membrane protein (DUF2206) DUF4277 PF14104.6 gi|20089926|ref|NP_616001.1| - 3.2e-38 130.4 0.0 7.7e-38 129.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20089926|ref|NP_616001.1| - 1.6e-11 44.3 0.3 6.4e-11 42.3 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20089926|ref|NP_616001.1| - 0.062 13.6 0.2 11 6.4 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute MULE PF10551.9 gi|20089927|ref|NP_616002.1| - 0.00017 22.0 0.0 0.00039 20.8 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 gi|20089927|ref|NP_616002.1| - 0.0063 16.7 0.1 0.0096 16.1 0.1 1.3 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|20089928|ref|NP_616003.1| - 6.9e-25 87.6 0.0 1.3e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20089928|ref|NP_616003.1| - 5e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20089928|ref|NP_616003.1| - 6.6e-05 22.8 0.1 0.0011 19.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|20089928|ref|NP_616003.1| - 0.0027 16.7 0.0 0.0053 15.8 0.0 1.4 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20089928|ref|NP_616003.1| - 0.0035 17.1 0.1 0.0088 15.8 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20089928|ref|NP_616003.1| - 0.0072 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|20089928|ref|NP_616003.1| - 0.013 15.2 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|20089928|ref|NP_616003.1| - 0.016 15.0 0.3 0.1 12.4 0.0 2.4 2 1 1 3 3 3 0 Homeodomain-like domain HTH_11 PF08279.12 gi|20089928|ref|NP_616003.1| - 0.03 14.3 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|20089928|ref|NP_616003.1| - 0.034 13.9 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MetOD2 PF18548.1 gi|20089928|ref|NP_616003.1| - 0.035 14.2 0.0 5.8 7.1 0.0 3.4 3 1 1 4 4 4 0 Metanogen output domain 2 HTH_7 PF02796.15 gi|20089928|ref|NP_616003.1| - 0.044 13.9 0.3 1.1 9.4 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase MerR_1 PF13411.6 gi|20089928|ref|NP_616003.1| - 0.05 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF746 PF05344.11 gi|20089928|ref|NP_616003.1| - 0.057 13.3 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_36 PF13730.6 gi|20089928|ref|NP_616003.1| - 0.076 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|20089928|ref|NP_616003.1| - 0.084 12.7 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|20089928|ref|NP_616003.1| - 0.1 12.6 0.2 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 gi|20089928|ref|NP_616003.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20089928|ref|NP_616003.1| - 0.13 11.9 0.1 2 8.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) Disaggr_repeat PF06848.11 gi|20089929|ref|NP_616004.1| - 3.5e-176 580.7 19.7 1.2e-88 295.5 5.1 2.6 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|20089929|ref|NP_616004.1| - 3e-83 278.3 13.2 3e-83 278.3 13.2 2.8 2 0 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.6 gi|20089929|ref|NP_616004.1| - 2.3e-16 60.0 46.8 2.9e-11 43.4 18.5 4.7 3 1 1 4 4 4 2 Right handed beta helix region Big_9 PF17963.1 gi|20089929|ref|NP_616004.1| - 2.7e-08 34.4 4.3 1.1e-07 32.5 0.3 3.2 2 0 0 2 2 2 1 Bacterial Ig domain Cadherin_5 PF17892.1 gi|20089929|ref|NP_616004.1| - 0.00055 19.9 0.1 0.0013 18.6 0.1 1.7 1 0 0 1 1 1 1 Cadherin-like domain DUF5123 PF17161.4 gi|20089929|ref|NP_616004.1| - 0.00084 20.4 0.7 0.00084 20.4 0.7 4.4 2 1 3 5 5 5 1 Domain of unknown function (DUF5123) Big_7 PF17957.1 gi|20089929|ref|NP_616004.1| - 0.02 15.6 1.1 1.7 9.4 0.1 3.2 2 0 0 2 2 2 0 Bacterial Ig domain Cadherin_4 PF17803.1 gi|20089929|ref|NP_616004.1| - 0.24 12.1 6.2 0.5 11.0 0.4 3.3 1 1 1 2 2 2 0 Bacterial cadherin-like domain DUF4277 PF14104.6 gi|20089930|ref|NP_616005.1| - 7.9e-39 132.4 0.0 1.9e-38 131.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20089930|ref|NP_616005.1| - 3.2e-11 43.3 0.6 1.7e-10 40.9 0.6 2.0 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20089930|ref|NP_616005.1| - 0.079 13.2 0.2 11 6.3 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute Glyco_trans_1_4 PF13692.6 gi|20089931|ref|NP_616006.1| - 1.4e-26 93.5 0.0 2.2e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20089931|ref|NP_616006.1| - 6.7e-18 65.3 0.0 1.2e-17 64.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|20089931|ref|NP_616006.1| - 2.6e-12 46.6 0.0 4.9e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20089931|ref|NP_616006.1| - 3.6e-08 34.0 0.0 5e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|20089931|ref|NP_616006.1| - 2.1e-07 31.2 0.0 4e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|20089931|ref|NP_616006.1| - 0.00095 19.2 1.1 0.071 13.1 0.2 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_N PF04413.16 gi|20089931|ref|NP_616006.1| - 0.1 12.3 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glycos_transf_1 PF00534.20 gi|20089932|ref|NP_616007.1| - 4.7e-42 143.4 0.0 8.5e-42 142.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20089932|ref|NP_616007.1| - 2.1e-31 109.1 0.0 3.9e-31 108.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20089932|ref|NP_616007.1| - 1.5e-13 51.1 0.1 1.5e-12 47.8 0.4 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|20089932|ref|NP_616007.1| - 6.4e-06 26.7 0.0 1.2e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|20089932|ref|NP_616007.1| - 2.9e-05 24.4 0.0 8e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|20089932|ref|NP_616007.1| - 0.00027 21.0 0.3 0.00074 19.6 0.3 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like DUF3492 PF11997.8 gi|20089932|ref|NP_616007.1| - 0.0031 17.3 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3492) AMP-binding PF00501.28 gi|20089933|ref|NP_616008.1| - 0.0026 16.4 0.0 0.005 15.5 0.0 1.5 2 0 0 2 2 2 1 AMP-binding enzyme DUF354 PF04007.12 gi|20089934|ref|NP_616009.1| - 1.4e-13 50.6 0.1 1.7e-13 50.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Methyltransf_31 PF13847.6 gi|20089935|ref|NP_616010.1| - 7e-15 55.1 0.1 1e-14 54.6 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20089935|ref|NP_616010.1| - 3.9e-12 46.7 0.0 1e-11 45.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089935|ref|NP_616010.1| - 1.7e-10 41.4 0.0 3.3e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20089935|ref|NP_616010.1| - 4.5e-08 33.1 0.0 6.2e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|20089935|ref|NP_616010.1| - 7.5e-08 32.5 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20089935|ref|NP_616010.1| - 6.7e-07 30.0 0.0 1.5e-06 28.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|20089935|ref|NP_616010.1| - 3.8e-06 26.5 0.0 7.7e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|20089935|ref|NP_616010.1| - 1.4e-05 24.7 0.0 4.6e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|20089935|ref|NP_616010.1| - 1.9e-05 24.1 0.0 2.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|20089935|ref|NP_616010.1| - 4.8e-05 22.5 0.0 6.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|20089935|ref|NP_616010.1| - 0.00065 19.5 0.0 0.001 18.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|20089935|ref|NP_616010.1| - 0.0027 17.4 0.0 0.0042 16.7 0.0 1.3 1 1 0 1 1 1 1 Nodulation protein S (NodS) AdoMet_MTase PF07757.13 gi|20089935|ref|NP_616010.1| - 0.0043 17.4 0.1 0.018 15.4 0.0 2.0 2 0 0 2 2 2 1 Predicted AdoMet-dependent methyltransferase Methyltransf_9 PF08003.11 gi|20089935|ref|NP_616010.1| - 0.0047 15.9 0.0 0.0066 15.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_18 PF12847.7 gi|20089935|ref|NP_616010.1| - 0.0064 16.4 0.0 0.0087 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20089935|ref|NP_616010.1| - 0.0072 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Pox_MCEL PF03291.16 gi|20089935|ref|NP_616010.1| - 0.011 14.8 0.1 0.018 14.1 0.1 1.2 1 0 0 1 1 1 0 mRNA capping enzyme MetW PF07021.12 gi|20089935|ref|NP_616010.1| - 0.091 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Polysacc_deac_1 PF01522.21 gi|20089936|ref|NP_616011.1| - 0.00096 19.0 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase EELM2 PF15863.5 gi|20089936|ref|NP_616011.1| - 0.018 15.2 0.8 0.088 12.9 0.0 2.2 2 1 0 2 2 2 0 Extended EGL-27 and MTA1 homology domain DUF1283 PF06932.11 gi|20089936|ref|NP_616011.1| - 0.067 13.4 0.1 0.18 12.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) Polysacc_deac_1 PF01522.21 gi|20089937|ref|NP_616012.1| - 3.8e-19 68.8 0.0 5.2e-16 58.7 0.0 2.4 2 0 0 2 2 2 2 Polysaccharide deacetylase DUF3473 PF11959.8 gi|20089937|ref|NP_616012.1| - 4.4e-09 36.5 0.1 1.2e-08 35.0 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Glycos_transf_2 PF00535.26 gi|20089938|ref|NP_616013.1| - 3.9e-36 124.4 0.0 4.6e-21 75.4 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20089938|ref|NP_616013.1| - 6.6e-06 26.2 0.0 0.014 15.3 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|20089938|ref|NP_616013.1| - 9.9e-06 26.0 0.0 0.0026 18.2 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|20089938|ref|NP_616013.1| - 0.13 11.8 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 CPBP PF02517.16 gi|20089939|ref|NP_616014.1| - 2.4e-15 56.6 6.4 2.4e-15 56.6 6.4 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease VanZ PF04892.12 gi|20089940|ref|NP_616015.1| - 0.00013 22.6 0.4 0.00016 22.3 0.4 1.3 1 0 0 1 1 1 1 VanZ like family DUF5436 PF17504.2 gi|20089940|ref|NP_616015.1| - 0.062 13.6 0.2 0.12 12.7 0.2 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5436) Chordopox_A13L PF05961.11 gi|20089940|ref|NP_616015.1| - 0.11 12.8 0.1 0.24 11.7 0.1 1.6 1 0 0 1 1 1 0 Chordopoxvirus A13L protein Ribosomal_L3 PF00297.22 gi|20089942|ref|NP_616017.1| - 7e-86 288.5 0.2 2.6e-85 286.6 0.2 1.7 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|20089943|ref|NP_616018.1| - 4.9e-50 169.9 0.2 5.6e-50 169.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|20089944|ref|NP_616019.1| - 1.7e-14 53.9 0.7 2e-14 53.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L23 Fur_reg_FbpB PF13040.6 gi|20089944|ref|NP_616019.1| - 0.21 11.2 3.1 0.35 10.4 0.3 2.5 2 1 1 3 3 3 0 Fur-regulated basic protein B Ribosomal_L2_C PF03947.18 gi|20089945|ref|NP_616020.1| - 1e-42 145.3 0.8 1.6e-42 144.6 0.8 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|20089945|ref|NP_616020.1| - 6.5e-16 58.1 0.0 1.4e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|20089946|ref|NP_616021.1| - 1.2e-26 92.4 0.5 1.8e-26 91.8 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|20089946|ref|NP_616021.1| - 0.055 12.5 0.0 0.058 12.4 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|20089947|ref|NP_616022.1| - 1.4e-32 112.0 0.2 1.7e-32 111.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|20089948|ref|NP_616023.1| - 9.7e-22 77.3 0.2 2.2e-21 76.1 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|20089948|ref|NP_616023.1| - 1.9e-15 56.5 0.0 5.1e-15 55.1 0.0 1.8 1 0 0 1 1 1 1 KH domain Mitofilin PF09731.9 gi|20089948|ref|NP_616023.1| - 0.0013 17.7 5.5 0.0018 17.2 5.5 1.2 1 0 0 1 1 1 1 Mitochondrial inner membrane protein KH_1 PF00013.29 gi|20089948|ref|NP_616023.1| - 0.084 12.7 0.2 0.58 10.0 0.1 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.23 gi|20089949|ref|NP_616024.1| - 4.2e-18 65.1 0.3 5.2e-18 64.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.13 gi|20089949|ref|NP_616024.1| - 0.071 13.2 0.6 0.64 10.1 0.2 2.0 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 UPF0086 PF01868.16 gi|20089950|ref|NP_616025.1| - 3e-23 81.5 0.0 3.5e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|20089951|ref|NP_616026.1| - 2.8e-28 97.8 5.6 3.4e-28 97.5 5.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|20089951|ref|NP_616026.1| - 0.0037 17.6 0.1 0.012 16.0 0.0 1.8 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|20089952|ref|NP_616027.1| - 4.2e-36 123.7 1.3 4.6e-36 123.6 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|20089953|ref|NP_616028.1| - 3e-27 94.9 0.1 3.6e-27 94.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|20089953|ref|NP_616028.1| - 6.8e-06 25.9 0.8 1.4e-05 24.8 0.8 1.6 1 0 0 1 1 1 1 KOW motif DUF4150 PF13665.6 gi|20089953|ref|NP_616028.1| - 0.059 13.5 0.2 0.077 13.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) Ribosomal_S4e PF00900.20 gi|20089954|ref|NP_616029.1| - 1.1e-22 79.7 0.4 2e-22 78.8 0.4 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|20089954|ref|NP_616029.1| - 1.2e-09 38.1 2.6 2.9e-09 36.9 2.6 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|20089954|ref|NP_616029.1| - 8.2e-07 28.6 0.3 4.8e-06 26.2 0.1 2.3 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|20089954|ref|NP_616029.1| - 0.00036 20.4 1.3 0.00053 19.8 0.2 2.0 2 0 0 2 2 2 1 KOW motif LYTB PF02401.18 gi|20089954|ref|NP_616029.1| - 0.022 14.0 0.1 0.029 13.6 0.1 1.3 1 0 0 1 1 1 0 LytB protein Ribosomal_L5_C PF00673.21 gi|20089955|ref|NP_616030.1| - 1.7e-26 92.2 0.0 2.3e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|20089955|ref|NP_616030.1| - 3.3e-15 56.1 0.1 7e-15 55.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|20089956|ref|NP_616031.1| - 1.2e-15 57.0 2.1 1.2e-15 57.0 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.14 gi|20089956|ref|NP_616031.1| - 0.00038 20.1 1.6 0.00047 19.7 1.6 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF4428 PF14471.6 gi|20089956|ref|NP_616031.1| - 0.00075 19.4 0.2 0.00093 19.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) zf-UBR PF02207.20 gi|20089956|ref|NP_616031.1| - 0.0059 16.7 0.5 0.0069 16.5 0.5 1.1 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) DUF1451 PF07295.11 gi|20089956|ref|NP_616031.1| - 0.037 14.1 0.6 0.042 13.9 0.6 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Rsm1 PF08600.10 gi|20089956|ref|NP_616031.1| - 1.4 9.1 4.1 11 6.2 0.3 2.0 1 1 1 2 2 2 0 Rsm1-like Ribosomal_S8 PF00410.19 gi|20089957|ref|NP_616032.1| - 3.1e-27 95.0 0.0 3.8e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|20089958|ref|NP_616033.1| - 3.9e-27 94.7 6.2 2.2e-15 57.1 0.2 2.0 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.18 gi|20089959|ref|NP_616034.1| - 1.8e-33 115.2 0.0 2.5e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|20089960|ref|NP_616035.1| - 9.7e-58 194.3 5.6 1.1e-57 194.2 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Lant_dehydr_C PF14028.6 gi|20089960|ref|NP_616035.1| - 0.037 13.6 0.1 0.038 13.5 0.1 1.2 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term DUF1943 PF09172.11 gi|20089960|ref|NP_616035.1| - 0.16 11.2 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1943) Ribosomal_L5e PF17144.4 gi|20089961|ref|NP_616036.1| - 8.6e-28 97.4 0.4 3.7e-18 66.0 0.2 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|20089961|ref|NP_616036.1| - 0.00027 21.3 0.0 0.00036 20.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Lipoprotein_16 PF03923.13 gi|20089961|ref|NP_616036.1| - 0.078 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized lipoprotein Ribosomal_S5 PF00333.20 gi|20089962|ref|NP_616037.1| - 3.3e-25 87.9 0.4 8.2e-25 86.6 0.4 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|20089962|ref|NP_616037.1| - 1.5e-22 78.9 0.4 2.6e-22 78.1 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|20089963|ref|NP_616038.1| - 1.5e-15 56.8 0.2 2.5e-15 56.1 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|20089964|ref|NP_616039.1| - 3.6e-24 85.9 0.6 4.8e-24 85.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|20089964|ref|NP_616039.1| - 0.063 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e SecY PF00344.20 gi|20089965|ref|NP_616040.1| - 8.9e-66 222.2 21.7 1.1e-65 222.0 21.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|20089965|ref|NP_616040.1| - 7.6e-11 41.7 2.3 1.2e-10 41.0 0.9 2.2 2 0 0 2 2 2 1 Plug domain of Sec61p CrgA PF06781.12 gi|20089965|ref|NP_616040.1| - 9.9 6.3 10.1 0.39 10.8 2.1 2.8 3 0 0 3 3 3 0 Cell division protein CrgA ADK PF00406.22 gi|20089966|ref|NP_616041.1| - 1.8e-60 203.4 0.0 2.2e-60 203.2 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|20089966|ref|NP_616041.1| - 5.6e-28 98.1 0.0 8.5e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|20089966|ref|NP_616041.1| - 1.5e-14 53.6 0.9 2.4e-14 53.0 0.9 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 gi|20089966|ref|NP_616041.1| - 2.8e-06 27.8 0.9 0.01 16.1 0.1 2.7 2 1 1 3 3 3 2 Hydin Adenylate kinase-like domain AAA_18 PF13238.6 gi|20089966|ref|NP_616041.1| - 0.00012 22.7 0.0 0.0003 21.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|20089966|ref|NP_616041.1| - 0.0077 16.4 0.0 0.024 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20089966|ref|NP_616041.1| - 0.08 13.2 0.0 0.22 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|20089966|ref|NP_616041.1| - 0.083 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA PF00004.29 gi|20089966|ref|NP_616041.1| - 0.087 13.2 0.0 0.24 11.9 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|20089966|ref|NP_616041.1| - 0.095 12.4 0.0 7.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase Mg_chelatase PF01078.21 gi|20089966|ref|NP_616041.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|20089966|ref|NP_616041.1| - 0.11 12.2 0.1 0.21 11.3 0.1 1.7 1 1 1 2 2 2 0 AAA domain HTH_45 PF14947.6 gi|20089967|ref|NP_616042.1| - 3.3e-06 27.0 0.1 4.9e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|20089967|ref|NP_616042.1| - 1.4e-05 24.9 0.1 2.5e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|20089967|ref|NP_616042.1| - 1.9e-05 24.4 0.0 3.5e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|20089967|ref|NP_616042.1| - 2e-05 24.4 0.0 2.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|20089967|ref|NP_616042.1| - 3.1e-05 23.7 0.3 6e-05 22.8 0.3 1.5 1 1 1 2 2 2 1 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|20089967|ref|NP_616042.1| - 0.00011 20.8 1.1 0.00012 20.6 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_20 PF12840.7 gi|20089967|ref|NP_616042.1| - 0.00014 21.9 0.1 0.0002 21.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|20089967|ref|NP_616042.1| - 0.00029 20.9 0.2 0.0011 19.0 0.2 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|20089967|ref|NP_616042.1| - 0.00031 20.6 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|20089967|ref|NP_616042.1| - 0.00073 19.4 0.2 0.0014 18.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|20089967|ref|NP_616042.1| - 0.00089 19.4 0.2 0.0013 18.9 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|20089967|ref|NP_616042.1| - 0.0011 19.1 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_36 PF13730.6 gi|20089967|ref|NP_616042.1| - 0.0012 18.8 0.0 0.0026 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20089967|ref|NP_616042.1| - 0.0014 18.1 0.1 0.002 17.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|20089967|ref|NP_616042.1| - 0.0016 18.9 0.2 0.0033 17.9 0.1 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.14 gi|20089967|ref|NP_616042.1| - 0.0023 17.8 0.1 0.003 17.5 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|20089967|ref|NP_616042.1| - 0.0024 17.7 0.0 0.0046 16.7 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) FeoC PF09012.10 gi|20089967|ref|NP_616042.1| - 0.0038 17.3 0.1 0.0069 16.4 0.1 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator Rio2_N PF09202.11 gi|20089967|ref|NP_616042.1| - 0.0046 17.1 0.1 0.012 15.9 0.0 1.6 1 1 1 2 2 2 1 Rio2, N-terminal Rrf2 PF02082.20 gi|20089967|ref|NP_616042.1| - 0.0077 16.6 0.1 0.011 16.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Phage_rep_org_N PF09681.10 gi|20089967|ref|NP_616042.1| - 0.02 14.8 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TFIIE_alpha PF02002.17 gi|20089967|ref|NP_616042.1| - 0.025 14.4 0.2 0.034 14.0 0.2 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit Ribosomal_S19e PF01090.19 gi|20089967|ref|NP_616042.1| - 0.026 14.2 0.1 0.029 14.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_28 PF13518.6 gi|20089967|ref|NP_616042.1| - 0.03 14.4 0.1 0.049 13.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3116 PF11313.8 gi|20089967|ref|NP_616042.1| - 0.034 14.0 0.2 0.043 13.7 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) DUF1495 PF07381.11 gi|20089967|ref|NP_616042.1| - 0.038 13.8 0.2 0.66 9.8 0.2 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_12 PF08461.10 gi|20089967|ref|NP_616042.1| - 0.046 13.7 0.1 0.089 12.7 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_DeoR PF08220.12 gi|20089967|ref|NP_616042.1| - 0.081 12.7 0.2 0.17 11.7 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|20089967|ref|NP_616042.1| - 0.11 12.3 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TackOD1 PF18551.1 gi|20089967|ref|NP_616042.1| - 0.11 12.1 0.2 0.14 11.8 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 HrcA_DNA-bdg PF03444.15 gi|20089967|ref|NP_616042.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Hexapep PF00132.24 gi|20089968|ref|NP_616043.1| - 3.9e-13 48.5 11.5 9e-06 25.2 1.2 4.6 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|20089968|ref|NP_616043.1| - 0.00011 21.3 2.5 0.0024 16.9 2.5 2.3 1 1 0 1 1 1 1 L-fucokinase Hexapep_2 PF14602.6 gi|20089968|ref|NP_616043.1| - 0.00021 21.0 12.3 0.11 12.3 0.2 4.2 3 2 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF188 PF02639.14 gi|20089968|ref|NP_616043.1| - 0.0076 15.9 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 DUF745 PF05335.13 gi|20089969|ref|NP_616044.1| - 0.12 12.1 20.8 0.09 12.5 0.6 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF745) Osmo_CC PF08946.10 gi|20089969|ref|NP_616044.1| - 0.43 10.9 8.1 4.6 7.6 0.2 4.1 4 0 0 4 4 4 0 Osmosensory transporter coiled coil DUF4407 PF14362.6 gi|20089969|ref|NP_616044.1| - 0.77 9.1 20.5 1.6e+02 1.5 20.5 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Helitron_like_N PF14214.6 gi|20089969|ref|NP_616044.1| - 5.6 7.1 6.5 0.87 9.8 1.5 2.2 3 0 0 3 3 3 0 Helitron helicase-like domain at N-terminus Syntaxin_2 PF14523.6 gi|20089969|ref|NP_616044.1| - 7.7 7.0 21.3 9.7 6.6 1.0 3.7 3 2 0 3 3 3 0 Syntaxin-like protein MerR-DNA-bind PF09278.11 gi|20089970|ref|NP_616045.1| - 0.00081 19.9 0.0 0.0009 19.7 0.0 1.1 1 0 0 1 1 1 1 MerR, DNA binding FGE-sulfatase PF03781.16 gi|20089971|ref|NP_616046.1| - 3.8e-39 134.8 3.5 2.6e-38 132.1 3.5 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF1566 PF07603.11 gi|20089971|ref|NP_616046.1| - 0.1 13.0 0.4 0.21 12.0 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1566) EMC3_TMCO1 PF01956.16 gi|20089972|ref|NP_616047.1| - 2.2e-50 170.7 7.1 2.7e-50 170.4 7.1 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like HPIH PF13323.6 gi|20089972|ref|NP_616047.1| - 0.0052 16.6 0.8 0.0091 15.9 0.3 1.6 1 1 0 1 1 1 1 N-terminal domain with HPIH motif Cytidylate_kin2 PF13189.6 gi|20089973|ref|NP_616048.1| - 4.2e-22 79.1 0.4 3.4e-21 76.2 0.4 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|20089973|ref|NP_616048.1| - 1.9e-11 44.6 0.0 2.5e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|20089973|ref|NP_616048.1| - 6e-09 36.4 0.1 1.2e-08 35.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|20089973|ref|NP_616048.1| - 9.3e-06 25.5 0.6 0.038 13.7 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase SKI PF01202.22 gi|20089973|ref|NP_616048.1| - 0.00024 21.3 0.2 0.0011 19.1 0.2 1.8 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.22 gi|20089973|ref|NP_616048.1| - 0.0011 19.1 0.0 0.0027 17.8 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|20089973|ref|NP_616048.1| - 0.0023 18.1 0.1 0.038 14.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|20089973|ref|NP_616048.1| - 0.0027 17.6 0.8 1.9 8.3 0.6 2.1 1 1 0 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|20089973|ref|NP_616048.1| - 0.0093 16.2 0.0 0.02 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain Sulfotransfer_3 PF13469.6 gi|20089973|ref|NP_616048.1| - 0.015 15.6 0.0 0.026 14.9 0.0 1.3 1 1 0 1 1 1 0 Sulfotransferase family TruB_C_2 PF16198.5 gi|20089974|ref|NP_616049.1| - 7.6e-29 99.7 0.0 1.3e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|20089974|ref|NP_616049.1| - 1.4e-22 80.7 1.5 2.1e-12 47.7 0.1 3.5 2 1 1 3 3 3 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.12 gi|20089974|ref|NP_616049.1| - 2.3e-18 66.0 0.0 4.6e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|20089974|ref|NP_616049.1| - 2.4e-17 62.7 0.1 4.9e-17 61.7 0.1 1.6 1 0 0 1 1 1 1 PUA domain ABC_tran PF00005.27 gi|20089975|ref|NP_616050.1| - 2.3e-19 70.3 0.0 3.4e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089975|ref|NP_616050.1| - 4.8e-06 26.6 2.8 0.015 15.1 0.3 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20089975|ref|NP_616050.1| - 8.7e-05 23.1 0.3 0.00018 22.1 0.3 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089975|ref|NP_616050.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|20089975|ref|NP_616050.1| - 0.064 12.4 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|20089975|ref|NP_616050.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|20089975|ref|NP_616050.1| - 0.15 11.5 0.6 0.22 10.9 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20089975|ref|NP_616050.1| - 0.16 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|20089975|ref|NP_616050.1| - 1.1 7.8 3.7 0.96 8.0 0.1 2.1 2 1 1 3 3 3 0 AAA domain Ribosomal_S13 PF00416.22 gi|20089977|ref|NP_616052.1| - 1.3e-40 138.7 0.0 1.6e-40 138.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH PF00633.23 gi|20089977|ref|NP_616052.1| - 0.12 12.3 0.2 0.3 11.0 0.2 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|20089977|ref|NP_616052.1| - 0.17 12.3 0.1 0.38 11.2 0.1 1.6 1 0 0 1 1 1 0 IMS family HHH motif S4 PF01479.25 gi|20089978|ref|NP_616053.1| - 8.4e-15 54.2 0.2 9e-14 50.9 0.0 2.4 2 0 0 2 2 2 1 S4 domain Ribosomal_S11 PF00411.19 gi|20089979|ref|NP_616054.1| - 7.7e-47 158.2 3.4 1.1e-46 157.8 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|20089979|ref|NP_616054.1| - 0.0081 15.9 0.1 0.0094 15.7 0.1 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) CBM_25 PF03423.13 gi|20089979|ref|NP_616054.1| - 0.054 13.7 0.1 0.13 12.6 0.0 1.6 2 0 0 2 2 2 0 Carbohydrate binding domain (family 25) Radical_SAM PF04055.21 gi|20089980|ref|NP_616055.1| - 1.8e-15 57.7 3.0 1.9e-14 54.4 2.2 2.7 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20089980|ref|NP_616055.1| - 1.5e-06 28.5 1.8 3e-06 27.6 0.1 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20089980|ref|NP_616055.1| - 8e-06 26.0 1.2 2.1e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-Di19 PF05605.12 gi|20089980|ref|NP_616055.1| - 4 7.8 8.6 12 6.3 4.5 2.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding rve PF00665.26 gi|20089982|ref|NP_616057.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20089982|ref|NP_616057.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20089982|ref|NP_616057.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20089982|ref|NP_616057.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20089982|ref|NP_616057.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089982|ref|NP_616057.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20089982|ref|NP_616057.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal Cation_efflux PF01545.21 gi|20089983|ref|NP_616058.1| - 1.1e-39 136.2 10.3 1.5e-39 135.8 10.3 1.1 1 0 0 1 1 1 1 Cation efflux family UPF0242 PF06785.11 gi|20089983|ref|NP_616058.1| - 0.067 13.3 0.6 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus MacB_PCD PF12704.7 gi|20089984|ref|NP_616059.1| - 2.9e-31 109.4 3.8 2.9e-31 109.4 3.8 2.8 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20089984|ref|NP_616059.1| - 2.1e-13 50.5 14.6 2.9e-13 50.1 4.8 3.2 3 0 0 3 3 3 1 FtsX-like permease family Yip1 PF04893.17 gi|20089984|ref|NP_616059.1| - 0.44 10.3 12.2 1.5 8.5 9.1 2.3 2 0 0 2 2 2 0 Yip1 domain DUF4134 PF13572.6 gi|20089984|ref|NP_616059.1| - 1.5 9.2 8.3 0.21 11.9 0.9 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4134) NPCBM_assoc PF10633.9 gi|20089985|ref|NP_616060.1| - 4.2e-14 52.6 1.2 2.3e-06 27.8 0.0 3.8 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|20089985|ref|NP_616060.1| - 1.4e-07 31.7 18.5 0.01 16.1 0.3 4.2 2 1 2 4 4 4 3 CARDB DUF11 PF01345.18 gi|20089985|ref|NP_616060.1| - 1.6e-06 28.3 10.2 0.0084 16.4 0.1 3.9 2 1 1 3 3 3 2 Domain of unknown function DUF11 Wzt_C PF14524.6 gi|20089985|ref|NP_616060.1| - 0.0018 18.3 1.1 0.081 13.0 0.1 3.6 2 1 0 4 4 4 1 Wzt C-terminal domain A2M PF00207.22 gi|20089985|ref|NP_616060.1| - 0.011 15.6 1.2 0.12 12.2 0.0 3.2 3 1 1 4 4 4 0 Alpha-2-macroglobulin family Ig_GlcNase PF18368.1 gi|20089985|ref|NP_616060.1| - 0.025 14.7 1.9 14 5.9 0.0 3.9 3 1 0 3 3 3 0 Exo-beta-D-glucosaminidase Ig-fold domain FixG_C PF11614.8 gi|20089985|ref|NP_616060.1| - 0.072 13.3 4.4 10 6.3 0.2 4.2 3 2 1 4 4 4 0 IG-like fold at C-terminal of FixG, putative oxidoreductase fn3_6 PF17766.1 gi|20089985|ref|NP_616060.1| - 0.14 12.4 3.7 0.54 10.5 0.1 3.3 2 1 0 3 3 3 0 Fibronectin type-III domain DUF150_C PF17384.2 gi|20089985|ref|NP_616060.1| - 0.39 10.9 2.1 0.88 9.8 0.7 2.4 3 0 0 3 3 3 0 RimP C-terminal SH3 domain ABC_tran PF00005.27 gi|20089986|ref|NP_616061.1| - 3.4e-32 111.8 0.0 6e-32 111.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20089986|ref|NP_616061.1| - 1e-07 31.7 0.0 4.7e-07 29.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20089986|ref|NP_616061.1| - 4.3e-07 30.1 0.5 0.015 15.1 0.3 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20089986|ref|NP_616061.1| - 3.9e-05 24.1 0.0 7.6e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20089986|ref|NP_616061.1| - 0.00048 19.8 0.0 0.00093 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20089986|ref|NP_616061.1| - 0.001 19.0 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_14 PF13173.6 gi|20089986|ref|NP_616061.1| - 0.0019 18.2 0.1 0.016 15.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20089986|ref|NP_616061.1| - 0.003 17.8 0.1 0.029 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|20089986|ref|NP_616061.1| - 0.0033 16.2 0.0 0.15 10.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|20089986|ref|NP_616061.1| - 0.0058 17.2 0.6 0.019 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain SRPRB PF09439.10 gi|20089986|ref|NP_616061.1| - 0.011 15.2 0.4 7.1 6.0 0.0 3.2 4 0 0 4 4 4 0 Signal recognition particle receptor beta subunit IstB_IS21 PF01695.17 gi|20089986|ref|NP_616061.1| - 0.021 14.6 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|20089986|ref|NP_616061.1| - 0.027 15.0 0.4 0.21 12.1 0.4 2.3 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|20089986|ref|NP_616061.1| - 0.042 13.9 0.1 0.4 10.8 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|20089986|ref|NP_616061.1| - 0.046 13.4 0.2 0.14 11.8 0.0 2.1 3 0 0 3 3 3 0 AAA domain ATPase_2 PF01637.18 gi|20089986|ref|NP_616061.1| - 0.047 13.6 0.3 0.15 12.0 0.1 2.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea G-alpha PF00503.20 gi|20089986|ref|NP_616061.1| - 0.052 12.7 0.1 0.08 12.1 0.0 1.4 2 0 0 2 2 2 0 G-protein alpha subunit RNA_helicase PF00910.22 gi|20089986|ref|NP_616061.1| - 0.078 13.4 0.0 0.23 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DUF2119 PF09892.9 gi|20089986|ref|NP_616061.1| - 0.085 12.2 0.1 5.9 6.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) AAA_10 PF12846.7 gi|20089986|ref|NP_616061.1| - 0.093 11.6 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.6 gi|20089986|ref|NP_616061.1| - 0.18 12.0 0.0 0.32 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MatE PF01554.18 gi|20089987|ref|NP_616062.1| - 4.4e-55 185.7 38.4 7.3e-30 103.7 12.4 2.7 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|20089987|ref|NP_616062.1| - 1.4e-08 34.9 33.5 4.9e-07 29.9 19.7 4.3 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|20089987|ref|NP_616062.1| - 0.00038 19.9 33.0 0.51 9.7 10.4 3.3 1 1 2 3 3 3 3 Polysaccharide biosynthesis protein DUF1240 PF06836.12 gi|20089987|ref|NP_616062.1| - 1.8 9.1 6.0 5.6 7.6 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) MarR PF01047.22 gi|20089988|ref|NP_616063.1| - 2.4e-14 53.0 0.0 3.9e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|20089988|ref|NP_616063.1| - 8.4e-13 48.0 0.0 1.4e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20089988|ref|NP_616063.1| - 7.6e-07 28.6 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|20089988|ref|NP_616063.1| - 2.5e-06 27.9 0.1 3.9e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|20089988|ref|NP_616063.1| - 2.5e-06 27.6 0.1 4.4e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|20089988|ref|NP_616063.1| - 3.4e-05 23.7 0.0 5.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|20089988|ref|NP_616063.1| - 0.00011 22.1 0.1 0.00023 21.1 0.0 1.6 2 0 0 2 2 1 1 HTH domain TrmB PF01978.19 gi|20089988|ref|NP_616063.1| - 0.00012 21.9 0.3 0.00026 20.8 0.3 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|20089988|ref|NP_616063.1| - 0.00022 21.1 0.0 0.00038 20.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|20089988|ref|NP_616063.1| - 0.00031 21.4 0.0 0.0005 20.7 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_34 PF13601.6 gi|20089988|ref|NP_616063.1| - 0.00036 20.7 0.1 0.00056 20.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_54 PF18607.1 gi|20089988|ref|NP_616063.1| - 0.00038 20.5 0.3 0.00052 20.0 0.3 1.3 1 0 0 1 1 1 1 ParA helix turn helix domain GntR PF00392.21 gi|20089988|ref|NP_616063.1| - 0.0013 18.4 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|20089988|ref|NP_616063.1| - 0.0037 17.1 0.6 0.0049 16.7 0.6 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_29 PF13551.6 gi|20089988|ref|NP_616063.1| - 0.0062 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix DUF3116 PF11313.8 gi|20089988|ref|NP_616063.1| - 0.0094 15.8 0.2 0.015 15.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) ANT PF03374.14 gi|20089988|ref|NP_616063.1| - 0.011 16.1 0.1 0.022 15.0 0.1 1.5 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_IclR PF09339.10 gi|20089988|ref|NP_616063.1| - 0.012 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mga PF05043.13 gi|20089988|ref|NP_616063.1| - 0.014 16.0 0.1 0.023 15.3 0.1 1.5 1 1 0 1 1 1 0 Mga helix-turn-helix domain HxlR PF01638.17 gi|20089988|ref|NP_616063.1| - 0.019 14.8 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.14 gi|20089988|ref|NP_616063.1| - 0.04 13.9 1.1 0.077 13.0 0.9 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_DeoR PF08220.12 gi|20089988|ref|NP_616063.1| - 0.04 13.7 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|20089988|ref|NP_616063.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|20089988|ref|NP_616063.1| - 0.069 13.5 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 gi|20089988|ref|NP_616063.1| - 0.11 12.6 0.0 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain EAP30 PF04157.16 gi|20089988|ref|NP_616063.1| - 0.11 11.7 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family DUF418 PF04235.12 gi|20089989|ref|NP_616064.1| - 0.042 13.8 0.4 0.07 13.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF418) rve PF00665.26 gi|20089991|ref|NP_616066.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20089991|ref|NP_616066.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20089991|ref|NP_616066.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20089991|ref|NP_616066.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20089991|ref|NP_616066.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20089991|ref|NP_616066.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20089991|ref|NP_616066.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal NPR1_interact PF15699.5 gi|20089992|ref|NP_616067.1| - 4.8e-07 30.4 16.3 6.1 7.5 0.1 6.8 7 0 0 7 7 7 5 NPR1 interacting PGF-CTERM PF18204.1 gi|20089992|ref|NP_616067.1| - 0.0029 17.5 0.0 0.005 16.8 0.0 1.4 1 0 0 1 1 1 1 PGF-CTERM motif Connexin50 PF03509.14 gi|20089992|ref|NP_616067.1| - 0.096 13.5 7.6 2.9e+02 2.4 0.0 6.1 7 0 0 7 7 7 0 Gap junction alpha-8 protein (Cx50) 3-PAP PF12578.8 gi|20089992|ref|NP_616067.1| - 0.18 11.5 0.0 16 5.2 0.0 3.6 4 0 0 4 4 4 0 Myotubularin-associated protein ATP19 PF11022.8 gi|20089992|ref|NP_616067.1| - 0.52 10.7 8.7 2e+02 2.4 0.0 6.0 6 0 0 6 6 6 0 ATP synthase subunit K Methyltransf_25 PF13649.6 gi|20089993|ref|NP_616068.1| - 7.2e-14 52.3 0.0 1.3e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20089993|ref|NP_616068.1| - 1.7e-11 43.7 0.1 6.3e-11 41.8 0.0 1.8 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|20089993|ref|NP_616068.1| - 2e-09 38.1 0.0 3.8e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20089993|ref|NP_616068.1| - 2.1e-09 37.9 0.0 4.2e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20089993|ref|NP_616068.1| - 8.9e-08 32.1 0.0 1.2e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20089993|ref|NP_616068.1| - 7.9e-07 28.8 0.0 3.8e-06 26.6 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase small domain PCMT PF01135.19 gi|20089993|ref|NP_616068.1| - 2.8e-06 27.2 0.0 4.1e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|20089993|ref|NP_616068.1| - 8.9e-06 25.2 0.0 8.9e-06 25.2 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20089993|ref|NP_616068.1| - 1.2e-05 25.2 0.0 1.9e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|20089993|ref|NP_616068.1| - 2.1e-05 23.9 0.0 3.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G DREV PF05219.12 gi|20089993|ref|NP_616068.1| - 4.2e-05 22.8 0.0 7e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_15 PF09445.10 gi|20089993|ref|NP_616068.1| - 0.00016 21.3 0.0 0.00061 19.4 0.0 1.8 1 1 0 2 2 2 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|20089993|ref|NP_616068.1| - 0.00051 19.5 0.1 0.0011 18.4 0.1 1.5 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_16 PF10294.9 gi|20089993|ref|NP_616068.1| - 0.0031 17.3 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase Met_10 PF02475.16 gi|20089993|ref|NP_616068.1| - 0.0042 16.9 0.2 0.012 15.4 0.0 1.9 2 1 0 2 2 2 1 Met-10+ like-protein PrmA PF06325.13 gi|20089993|ref|NP_616068.1| - 0.0042 16.5 0.0 0.0081 15.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|20089993|ref|NP_616068.1| - 0.0058 16.3 0.0 0.014 15.0 0.0 1.6 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|20089993|ref|NP_616068.1| - 0.0084 16.0 0.1 0.018 15.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|20089993|ref|NP_616068.1| - 0.011 15.4 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|20089993|ref|NP_616068.1| - 0.012 15.0 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.11 gi|20089993|ref|NP_616068.1| - 0.017 14.1 0.0 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase MetW PF07021.12 gi|20089993|ref|NP_616068.1| - 0.11 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.15 gi|20089993|ref|NP_616068.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Peripla_BP_2 PF01497.18 gi|20089994|ref|NP_616069.1| - 4.9e-17 62.3 0.1 2.1e-16 60.3 0.1 2.4 1 1 0 1 1 1 1 Periplasmic binding protein DUF5608 PF18356.1 gi|20089994|ref|NP_616069.1| - 0.023 14.7 0.3 0.057 13.4 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5608) DsbD PF02683.15 gi|20089995|ref|NP_616070.1| - 3.2e-11 43.5 17.2 5.5e-11 42.8 17.2 1.4 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|20089995|ref|NP_616070.1| - 0.079 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin domain COX14 PF14880.6 gi|20089995|ref|NP_616070.1| - 0.15 11.9 1.6 0.45 10.4 1.6 1.8 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Peripla_BP_2 PF01497.18 gi|20089996|ref|NP_616071.1| - 4.6e-21 75.5 0.0 7e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Phi-29_GP16_7 PF06720.11 gi|20089996|ref|NP_616071.1| - 0.1 12.5 0.1 0.53 10.1 0.0 2.2 2 0 0 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 MCR_C PF04609.12 gi|20089996|ref|NP_616071.1| - 0.13 11.3 0.1 0.21 10.6 0.1 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein C FecCD PF01032.18 gi|20089997|ref|NP_616072.1| - 4.7e-92 308.3 27.2 5.8e-92 308.0 27.2 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20089997|ref|NP_616072.1| - 1.4e-05 24.7 22.6 1.4e-05 24.7 22.6 2.5 2 1 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|20089998|ref|NP_616073.1| - 1.2e-30 106.9 0.0 1.5e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20089998|ref|NP_616073.1| - 2.3e-13 50.7 0.0 6.3e-08 32.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20089998|ref|NP_616073.1| - 1.9e-10 40.6 0.0 4.2e-09 36.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20089998|ref|NP_616073.1| - 0.00045 20.8 0.4 0.00075 20.0 0.4 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20089998|ref|NP_616073.1| - 0.0028 17.4 0.0 0.014 15.1 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.29 gi|20089998|ref|NP_616073.1| - 0.0092 16.4 0.0 0.021 15.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|20089998|ref|NP_616073.1| - 0.047 14.1 0.0 0.066 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|20089998|ref|NP_616073.1| - 0.11 12.1 0.1 5.6 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|20089998|ref|NP_616073.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|20089998|ref|NP_616073.1| - 0.19 11.3 0.0 1.4 8.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|20089998|ref|NP_616073.1| - 0.21 11.9 0.3 0.72 10.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain GyrI-like PF06445.15 gi|20089999|ref|NP_616074.1| - 2.1e-38 132.0 0.7 2.5e-38 131.8 0.7 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain ABC2_membrane_3 PF12698.7 gi|20089999|ref|NP_616074.1| - 0.043 12.9 0.0 0.049 12.7 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Hexapep PF00132.24 gi|20090000|ref|NP_616075.1| - 7e-20 69.9 16.3 6.8e-10 38.3 1.2 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20090000|ref|NP_616075.1| - 1.2e-10 40.9 12.0 2.6e-07 30.3 1.7 3.1 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF1771 PF08590.10 gi|20090000|ref|NP_616075.1| - 0.035 14.5 1.4 0.078 13.4 1.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Fucokinase PF07959.12 gi|20090000|ref|NP_616075.1| - 0.055 12.4 0.1 0.079 11.9 0.1 1.4 1 1 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|20090000|ref|NP_616075.1| - 0.21 9.7 4.6 0.19 9.8 3.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) AIRS_C PF02769.22 gi|20090002|ref|NP_616077.1| - 5.4e-30 104.6 0.3 7.3e-30 104.2 0.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|20090002|ref|NP_616077.1| - 1.3e-17 64.2 0.6 2.4e-17 63.4 0.1 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain cobW PF02492.19 gi|20090003|ref|NP_616078.1| - 1.5e-25 89.8 1.0 1.8e-25 89.6 1.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|20090003|ref|NP_616078.1| - 9.5e-06 24.8 1.8 0.012 14.6 0.4 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|20090003|ref|NP_616078.1| - 0.00071 20.1 0.1 0.0013 19.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20090003|ref|NP_616078.1| - 0.0027 18.1 0.0 0.0037 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 gi|20090003|ref|NP_616078.1| - 0.0042 17.5 0.2 0.025 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|20090003|ref|NP_616078.1| - 0.0054 16.6 0.1 0.015 15.2 0.1 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|20090003|ref|NP_616078.1| - 0.0066 16.4 0.3 0.027 14.4 0.1 2.0 1 1 1 2 2 2 1 NTPase SRP54 PF00448.22 gi|20090003|ref|NP_616078.1| - 0.0067 16.1 0.0 0.0096 15.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|20090003|ref|NP_616078.1| - 0.0069 15.6 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|20090003|ref|NP_616078.1| - 0.0073 16.3 0.0 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|20090003|ref|NP_616078.1| - 0.01 15.6 0.1 0.022 14.6 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|20090003|ref|NP_616078.1| - 0.014 15.2 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|20090003|ref|NP_616078.1| - 0.018 15.3 0.0 0.046 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20090003|ref|NP_616078.1| - 0.04 14.1 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|20090003|ref|NP_616078.1| - 0.041 13.9 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 gi|20090003|ref|NP_616078.1| - 0.043 13.3 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_19 PF13245.6 gi|20090003|ref|NP_616078.1| - 0.045 14.1 0.0 0.066 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|20090003|ref|NP_616078.1| - 0.053 13.1 0.5 0.5 9.9 0.1 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_29 PF13555.6 gi|20090003|ref|NP_616078.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|20090003|ref|NP_616078.1| - 0.088 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|20090003|ref|NP_616078.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|20090003|ref|NP_616078.1| - 0.15 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region HypA PF01155.19 gi|20090004|ref|NP_616079.1| - 9.8e-28 96.4 1.6 1.1e-27 96.2 1.6 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA T_hemolysin PF12261.8 gi|20090004|ref|NP_616079.1| - 0.14 11.9 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Thermostable hemolysin HypD PF01924.16 gi|20090005|ref|NP_616080.1| - 6e-139 463.0 0.0 7.3e-139 462.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Mu-like_Pro PF10123.9 gi|20090005|ref|NP_616080.1| - 0.18 11.4 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 Mu-like prophage I protein HupF_HypC PF01455.18 gi|20090006|ref|NP_616081.1| - 1.4e-22 79.6 0.2 1.7e-22 79.4 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family NiFe_hyd_SSU_C PF14720.6 gi|20090007|ref|NP_616082.1| - 4.9e-31 106.9 5.7 5e-30 103.7 3.2 2.3 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|20090007|ref|NP_616082.1| - 6.5e-31 106.9 0.1 1.2e-30 106.1 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|20090007|ref|NP_616082.1| - 0.00041 20.1 0.8 0.00041 20.1 0.8 2.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.19 gi|20090008|ref|NP_616083.1| - 2.2e-92 310.6 0.0 1.7e-60 205.4 0.0 3.1 3 0 0 3 3 3 3 Nickel-dependent hydrogenase NLRC4_HD PF17889.1 gi|20090008|ref|NP_616083.1| - 0.0078 16.5 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 NLRC4 helical domain DUF4405 PF14358.6 gi|20090009|ref|NP_616084.1| - 0.00074 20.0 17.0 0.053 14.1 6.5 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|20090009|ref|NP_616084.1| - 0.00098 18.8 20.8 0.003 17.2 20.8 1.7 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 HycI PF01750.18 gi|20090010|ref|NP_616085.1| - 7.5e-17 61.4 1.6 8.7e-17 61.2 1.6 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease PG_binding_1 PF01471.18 gi|20090011|ref|NP_616086.1| - 5.6e-14 52.1 0.0 1.6e-13 50.6 0.0 1.7 2 0 0 2 2 2 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 gi|20090011|ref|NP_616086.1| - 0.00034 20.8 0.2 0.21 11.8 0.0 2.3 1 1 1 2 2 2 2 Predicted Peptidoglycan domain NiFe_hyd_SSU_C PF14720.6 gi|20090012|ref|NP_616087.1| - 8.6e-29 99.7 4.9 1.3e-28 99.2 2.9 2.0 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|20090012|ref|NP_616087.1| - 3.8e-27 94.7 0.0 5.4e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|20090012|ref|NP_616087.1| - 0.041 13.7 0.2 0.041 13.7 0.2 2.9 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.19 gi|20090013|ref|NP_616088.1| - 9.1e-87 292.1 0.0 1.3e-56 192.5 0.0 3.1 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Ni_hydr_CYTB PF01292.20 gi|20090014|ref|NP_616089.1| - 8.5e-05 22.2 20.2 0.00031 20.4 20.2 1.8 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|20090014|ref|NP_616089.1| - 0.00086 19.8 23.6 0.22 12.1 9.7 3.0 2 1 0 2 2 2 2 Domain of unknown function (DUF4405) DUF3481 PF11980.8 gi|20090014|ref|NP_616089.1| - 0.049 13.3 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 C-terminal domain of neuropilin glycoprotein PsbN PF02468.15 gi|20090014|ref|NP_616089.1| - 1 9.2 3.6 22 5.0 0.1 2.4 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) HATPase_c PF02518.26 gi|20090015|ref|NP_616090.1| - 7e-31 107.0 0.0 1.8e-30 105.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|20090015|ref|NP_616090.1| - 2e-28 98.7 0.6 3.4e-11 43.3 0.1 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|20090015|ref|NP_616090.1| - 1.5e-25 89.5 0.0 5.6e-10 39.4 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|20090015|ref|NP_616090.1| - 1.2e-23 83.2 0.0 2.6e-10 40.3 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|20090015|ref|NP_616090.1| - 8.1e-19 67.2 0.0 9.1e-08 32.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 gi|20090015|ref|NP_616090.1| - 1.3e-17 63.5 0.1 3.8e-17 62.1 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain MEDS PF14417.6 gi|20090015|ref|NP_616090.1| - 3.4e-11 43.2 0.0 8.1e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c_5 PF14501.6 gi|20090015|ref|NP_616090.1| - 5.4e-05 23.0 0.0 0.00016 21.5 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|20090015|ref|NP_616090.1| - 0.00031 20.6 0.0 0.00072 19.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|20090015|ref|NP_616090.1| - 0.0046 17.2 0.1 1.1 9.6 0.0 3.3 4 0 0 4 4 4 1 PAS fold HATPase_c_2 PF13581.6 gi|20090015|ref|NP_616090.1| - 0.024 14.6 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|20090015|ref|NP_616090.1| - 0.029 14.5 0.0 14 5.9 0.0 3.5 3 0 0 3 3 3 0 PAS fold CGI-121 PF08617.10 gi|20090016|ref|NP_616091.1| - 8.1e-08 32.6 0.0 9.8e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 GATase PF00117.28 gi|20090017|ref|NP_616092.1| - 3.9e-15 56.1 0.0 5.6e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|20090017|ref|NP_616092.1| - 1.5e-05 24.8 0.0 0.00075 19.3 0.0 2.1 2 0 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|20090017|ref|NP_616092.1| - 0.0065 16.3 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|20090017|ref|NP_616092.1| - 0.0067 16.0 0.0 0.015 14.9 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain FBPase_glpX PF03320.13 gi|20090018|ref|NP_616093.1| - 2.1e-117 391.4 6.5 2.5e-117 391.2 6.5 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Oxidored_nitro PF00148.19 gi|20090018|ref|NP_616093.1| - 0.0089 14.8 0.2 0.015 14.0 0.2 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase UPF0261 PF06792.11 gi|20090018|ref|NP_616093.1| - 0.031 13.2 0.2 0.054 12.4 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0261) LRR_9 PF14580.6 gi|20090018|ref|NP_616093.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Leucine-rich repeat Radical_SAM PF04055.21 gi|20090019|ref|NP_616094.1| - 1.1e-22 81.2 0.1 1.6e-21 77.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|20090019|ref|NP_616094.1| - 1.9e-17 63.1 0.1 4.3e-17 62.0 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|20090019|ref|NP_616094.1| - 1.4e-05 25.0 0.0 2.4e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 TRAM domain M20_dimer PF07687.14 gi|20090019|ref|NP_616094.1| - 0.04 13.8 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Peptidase dimerisation domain Rubrerythrin PF02915.17 gi|20090023|ref|NP_616098.1| - 3.3e-23 82.6 5.4 4.7e-23 82.1 5.4 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|20090023|ref|NP_616098.1| - 0.0056 16.6 3.6 0.0079 16.1 3.6 1.3 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.7 gi|20090023|ref|NP_616098.1| - 0.014 15.4 0.4 0.022 14.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon NRDD PF13597.6 gi|20090023|ref|NP_616098.1| - 0.046 12.5 0.5 0.046 12.5 0.5 1.5 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-C3HC4_3 PF13920.6 gi|20090023|ref|NP_616098.1| - 0.1 12.5 0.3 0.15 11.9 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.6 gi|20090023|ref|NP_616098.1| - 0.25 11.1 1.7 0.55 10.0 1.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|20090023|ref|NP_616098.1| - 0.37 10.5 2.3 2.2 8.1 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin PF00301.20 gi|20090023|ref|NP_616098.1| - 0.71 9.9 5.4 1.7 8.7 0.6 2.4 1 1 1 2 2 2 0 Rubredoxin Acetyltransf_3 PF13302.7 gi|20090024|ref|NP_616099.1| - 5.4e-25 88.7 0.0 6.2e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20090024|ref|NP_616099.1| - 4e-07 30.3 0.0 5.1e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|20090024|ref|NP_616099.1| - 0.00071 19.5 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Glyco_hydro_92N PF17678.1 gi|20090024|ref|NP_616099.1| - 0.012 15.6 0.3 0.014 15.3 0.3 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 92 N-terminal domain DUF4941 PF16299.5 gi|20090024|ref|NP_616099.1| - 0.028 13.7 0.1 0.04 13.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4941) MFS_1 PF07690.16 gi|20090027|ref|NP_616102.1| - 7.1e-34 117.3 62.4 1.2e-30 106.7 30.4 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|20090027|ref|NP_616102.1| - 4.4e-14 51.8 13.7 6e-14 51.3 13.7 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector DUF485 PF04341.12 gi|20090027|ref|NP_616102.1| - 1.4 8.9 0.0 1.4 8.9 0.0 4.8 6 0 0 6 6 6 0 Protein of unknown function, DUF485 CPBP PF02517.16 gi|20090028|ref|NP_616103.1| - 7.3e-14 51.9 15.4 7.3e-14 51.9 15.4 2.5 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease DUF1279 PF06916.13 gi|20090028|ref|NP_616103.1| - 4.8 7.8 10.6 5.1 7.7 0.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1279) Metallophos PF00149.28 gi|20090029|ref|NP_616104.1| - 6.7e-13 49.6 0.2 1.4e-12 48.6 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20090029|ref|NP_616104.1| - 1.7e-08 34.8 0.0 5.6e-08 33.2 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.19 gi|20090030|ref|NP_616105.1| - 1.9e-15 56.9 20.2 5.1e-15 55.5 20.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20090030|ref|NP_616105.1| - 2.8e-09 37.2 5.9 1.6e-05 24.9 0.6 3.2 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20090030|ref|NP_616105.1| - 4.6e-08 33.2 5.2 4.6e-08 33.2 5.2 4.7 1 1 0 2 2 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20090030|ref|NP_616105.1| - 0.00012 21.8 0.0 0.00023 20.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4201 PF13870.6 gi|20090030|ref|NP_616105.1| - 0.0013 18.5 17.9 0.0013 18.5 17.9 7.0 2 1 5 7 7 6 1 Domain of unknown function (DUF4201) DUF5082 PF16888.5 gi|20090030|ref|NP_616105.1| - 0.0061 16.8 13.2 0.0061 16.8 13.2 7.2 5 3 0 7 7 7 1 Domain of unknown function (DUF5082) AAA_23 PF13476.6 gi|20090030|ref|NP_616105.1| - 0.0082 16.7 137.9 1.8e+04 -4.2 20.5 7.5 1 1 1 2 2 0 0 AAA domain zf-HC5HC2H_2 PF13832.6 gi|20090030|ref|NP_616105.1| - 0.14 12.3 0.4 0.36 11.0 0.4 1.6 1 0 0 1 1 1 0 PHD-zinc-finger like domain AAA_16 PF13191.6 gi|20090030|ref|NP_616105.1| - 0.6 10.5 0.0 0.6 10.5 0.0 4.6 4 1 0 4 4 3 0 AAA ATPase domain DUF3763 PF12592.8 gi|20090030|ref|NP_616105.1| - 1.9 8.6 5.4 16 5.6 0.0 3.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3763) zf-TFIIB PF13453.6 gi|20090030|ref|NP_616105.1| - 2.1 7.7 3.8 12 5.3 2.1 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger MCD_N PF17408.2 gi|20090030|ref|NP_616105.1| - 7.2 6.8 11.5 0.43 10.7 3.0 3.6 3 0 0 3 3 3 0 Malonyl-CoA decarboxylase N-terminal domain TPD PF14811.6 gi|20090031|ref|NP_616106.1| - 2.5e-49 166.6 0.2 3.7e-49 166.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif Pal1 PF08316.11 gi|20090032|ref|NP_616107.1| - 2.2 9.0 4.1 14 6.5 0.2 2.2 2 0 0 2 2 2 0 Pal1 cell morphology protein Pribosyltran_N PF13793.6 gi|20090033|ref|NP_616108.1| - 4.1e-28 97.7 0.0 3.8e-26 91.3 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|20090033|ref|NP_616108.1| - 1.6e-14 53.7 0.2 3e-14 52.8 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|20090033|ref|NP_616108.1| - 2.6e-08 34.1 0.7 4.2e-08 33.4 0.7 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|20090033|ref|NP_616108.1| - 4.7e-05 22.9 0.1 7.9e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|20090033|ref|NP_616108.1| - 0.0024 17.4 0.2 0.0071 15.9 0.2 1.6 1 1 1 2 2 2 1 Phosphoribosyl transferase MoaC PF01967.21 gi|20090034|ref|NP_616109.1| - 4.5e-49 166.0 4.2 5.1e-49 165.8 4.2 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|20090036|ref|NP_616111.1| - 7e-52 176.3 0.5 9.5e-52 175.9 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|20090036|ref|NP_616111.1| - 4.1e-39 134.2 1.5 4.8e-38 130.7 0.1 2.2 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|20090036|ref|NP_616111.1| - 5.6e-09 35.7 0.2 3.8e-08 33.0 0.2 2.0 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Peripla_BP_4 PF13407.6 gi|20090036|ref|NP_616111.1| - 0.017 14.7 0.0 0.045 13.3 0.0 1.7 1 0 0 1 1 1 0 Periplasmic binding protein domain TrkA_N PF02254.18 gi|20090037|ref|NP_616112.1| - 3.8e-24 85.2 0.0 8.7e-24 84.0 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain DHHA1 PF02272.19 gi|20090037|ref|NP_616112.1| - 6.4e-15 55.8 0.2 2.1e-14 54.1 0.0 2.0 2 0 0 2 2 1 1 DHHA1 domain DHH PF01368.20 gi|20090037|ref|NP_616112.1| - 1.4e-14 54.2 0.1 1.1e-13 51.2 0.1 2.1 2 0 0 2 2 2 1 DHH family ApbA PF02558.16 gi|20090037|ref|NP_616112.1| - 0.00079 19.1 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|20090037|ref|NP_616112.1| - 0.00085 19.9 0.0 0.0019 18.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|20090037|ref|NP_616112.1| - 0.0027 17.7 0.0 0.007 16.3 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|20090037|ref|NP_616112.1| - 0.0046 16.5 0.0 0.0091 15.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|20090037|ref|NP_616112.1| - 0.01 16.1 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Methyltransf_31 PF13847.6 gi|20090037|ref|NP_616112.1| - 0.018 14.9 0.1 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Epimerase PF01370.21 gi|20090037|ref|NP_616112.1| - 0.021 14.3 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family TyeA PF09059.10 gi|20090037|ref|NP_616112.1| - 0.031 14.4 0.0 0.074 13.2 0.0 1.5 1 0 0 1 1 1 0 TyeA Shikimate_DH PF01488.20 gi|20090037|ref|NP_616112.1| - 0.034 14.2 0.0 0.12 12.4 0.0 2.0 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|20090037|ref|NP_616112.1| - 0.049 12.9 0.0 0.12 11.6 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.27 gi|20090037|ref|NP_616112.1| - 0.078 13.6 0.1 2 9.1 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.25 gi|20090037|ref|NP_616112.1| - 0.098 12.1 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase PrpR_N PF06506.11 gi|20090037|ref|NP_616112.1| - 0.13 11.8 0.0 0.57 9.7 0.0 2.1 2 1 0 2 2 2 0 Propionate catabolism activator IlvN PF07991.12 gi|20090037|ref|NP_616112.1| - 0.16 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AglB_L1 PF18079.1 gi|20090038|ref|NP_616113.1| - 6.2e-22 77.7 2.1 6.2e-22 77.7 2.1 1.9 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|20090038|ref|NP_616113.1| - 7.9e-22 77.8 21.6 3.3e-21 75.8 21.5 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|20090038|ref|NP_616113.1| - 3.9e-08 33.7 2.1 3.9e-08 33.7 2.1 4.8 3 1 3 6 6 6 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Big_6 PF17936.1 gi|20090038|ref|NP_616113.1| - 0.019 15.3 1.8 0.044 14.1 1.8 1.6 1 0 0 1 1 1 0 Bacterial Ig domain NADHdh-2_N PF12155.8 gi|20090038|ref|NP_616113.1| - 0.11 12.9 1.8 0.42 11.0 1.8 2.1 1 0 0 1 1 1 0 NADH dehydrogenase subunit 2 N-terminal CrgA PF06781.12 gi|20090038|ref|NP_616113.1| - 0.46 10.6 7.0 11 6.1 0.0 3.6 3 0 0 3 3 3 0 Cell division protein CrgA GDP_Man_Dehyd PF16363.5 gi|20090039|ref|NP_616114.1| - 3.2e-156 519.8 0.0 3.6e-156 519.7 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|20090039|ref|NP_616114.1| - 4.6e-72 242.3 0.0 5.5e-72 242.1 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|20090039|ref|NP_616114.1| - 4.9e-06 25.9 0.0 7.6e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|20090039|ref|NP_616114.1| - 0.051 13.0 0.0 0.079 12.4 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Polysacc_synt_2 PF02719.15 gi|20090039|ref|NP_616114.1| - 0.16 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|20090040|ref|NP_616115.1| - 4.3e-141 470.1 0.0 4.8e-141 470.0 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|20090040|ref|NP_616115.1| - 2.8e-70 236.5 0.0 3.4e-70 236.3 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|20090040|ref|NP_616115.1| - 2.2e-11 43.4 0.0 2.9e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|20090040|ref|NP_616115.1| - 1.5e-05 24.2 0.0 2e-05 23.8 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|20090040|ref|NP_616115.1| - 0.00011 21.5 0.0 0.00016 20.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|20090040|ref|NP_616115.1| - 0.0016 17.9 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Glycos_transf_1 PF00534.20 gi|20090041|ref|NP_616116.1| - 2.8e-30 105.1 0.2 5.5e-30 104.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20090041|ref|NP_616116.1| - 5.9e-21 75.3 0.0 2.8e-20 73.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|20090041|ref|NP_616116.1| - 5.7e-05 23.4 0.2 0.00018 21.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20090041|ref|NP_616116.1| - 7.6e-05 22.8 0.1 0.00013 22.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_9 PF01075.17 gi|20090041|ref|NP_616116.1| - 0.18 11.1 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) ABC2_membrane PF01061.24 gi|20090042|ref|NP_616117.1| - 5.1e-28 97.9 33.6 5.1e-28 97.9 33.6 1.9 2 0 0 2 2 2 1 ABC-2 type transporter Wzt_C PF14524.6 gi|20090043|ref|NP_616118.1| - 1.3e-29 103.1 0.1 3.4e-29 101.7 0.1 1.8 2 0 0 2 2 2 1 Wzt C-terminal domain ABC_tran PF00005.27 gi|20090043|ref|NP_616118.1| - 3.6e-22 79.4 0.2 1.4e-21 77.5 0.2 2.0 1 1 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|20090043|ref|NP_616118.1| - 1.3e-05 24.9 0.1 3.4e-05 23.5 0.1 1.7 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|20090043|ref|NP_616118.1| - 1.3e-05 25.2 4.3 0.0019 18.1 2.5 2.6 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20090043|ref|NP_616118.1| - 0.0019 18.0 0.0 0.0028 17.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|20090043|ref|NP_616118.1| - 0.0067 16.9 0.1 0.032 14.7 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|20090043|ref|NP_616118.1| - 0.0068 15.9 0.4 0.12 11.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20090043|ref|NP_616118.1| - 0.038 14.4 0.0 0.066 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|20090043|ref|NP_616118.1| - 0.068 13.1 0.3 10 6.0 0.1 2.5 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|20090043|ref|NP_616118.1| - 0.095 12.7 0.2 3.1 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|20090043|ref|NP_616118.1| - 0.13 11.2 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Mg_chelatase PF01078.21 gi|20090043|ref|NP_616118.1| - 0.16 11.3 0.1 0.53 9.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|20090043|ref|NP_616118.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|20090043|ref|NP_616118.1| - 0.2 12.1 6.6 0.037 14.5 1.9 2.3 3 1 0 3 3 3 0 AAA domain MetW PF07021.12 gi|20090044|ref|NP_616119.1| - 1.3e-13 50.9 0.2 2.8e-13 49.9 0.2 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|20090044|ref|NP_616119.1| - 2.5e-08 34.5 0.0 4.6e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090044|ref|NP_616119.1| - 2.9e-08 33.7 0.0 5.5e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090044|ref|NP_616119.1| - 1.9e-07 31.7 0.0 4.2e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090044|ref|NP_616119.1| - 1.5e-05 24.8 0.1 3.5e-05 23.7 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Apolipoprotein PF01442.18 gi|20090044|ref|NP_616119.1| - 3.4e-05 23.8 0.3 6.4e-05 22.9 0.3 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF4795 PF16043.5 gi|20090044|ref|NP_616119.1| - 0.00082 19.0 2.5 0.00082 19.0 2.5 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4795) Methyltransf_12 PF08242.12 gi|20090044|ref|NP_616119.1| - 0.00089 20.0 0.1 0.0025 18.5 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Sds3 PF08598.11 gi|20090044|ref|NP_616119.1| - 0.0019 18.3 1.1 0.0032 17.5 1.1 1.4 1 0 0 1 1 1 1 Sds3-like Phe_tRNA-synt_N PF02912.18 gi|20090044|ref|NP_616119.1| - 0.0036 17.2 0.9 0.011 15.6 0.9 1.8 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain PLC-beta_C PF08703.10 gi|20090044|ref|NP_616119.1| - 0.0042 17.1 2.5 0.0091 16.0 2.5 1.5 1 0 0 1 1 1 1 PLC-beta C terminal Tup_N PF08581.10 gi|20090044|ref|NP_616119.1| - 0.0095 16.2 6.3 0.029 14.7 6.3 1.8 1 0 0 1 1 1 1 Tup N-terminal Exo70 PF03081.15 gi|20090044|ref|NP_616119.1| - 0.011 14.9 0.1 0.018 14.1 0.1 1.3 1 0 0 1 1 1 0 Exo70 exocyst complex subunit Gp58 PF07902.11 gi|20090044|ref|NP_616119.1| - 0.011 14.0 0.4 0.018 13.3 0.4 1.2 1 0 0 1 1 1 0 gp58-like protein Baculo_PEP_C PF04513.12 gi|20090044|ref|NP_616119.1| - 0.012 15.7 1.4 0.012 15.7 1.4 1.8 2 0 0 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF573 PF04504.14 gi|20090044|ref|NP_616119.1| - 0.024 15.3 1.0 0.052 14.2 0.2 1.9 2 0 0 2 2 1 0 Protein of unknown function, DUF573 CCDC158 PF15921.5 gi|20090044|ref|NP_616119.1| - 0.038 11.8 1.6 0.052 11.4 1.6 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 158 ApoLp-III PF07464.11 gi|20090044|ref|NP_616119.1| - 0.042 13.9 0.6 0.042 13.9 0.6 2.2 3 0 0 3 3 2 0 Apolipophorin-III precursor (apoLp-III) DUF883 PF05957.13 gi|20090044|ref|NP_616119.1| - 0.046 14.3 0.2 0.11 13.1 0.2 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) HIP1_clath_bdg PF16515.5 gi|20090044|ref|NP_616119.1| - 0.055 14.1 1.5 0.17 12.5 1.5 1.8 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Utp12 PF04003.12 gi|20090044|ref|NP_616119.1| - 0.07 13.4 0.1 17 5.8 0.0 2.7 2 0 0 2 2 2 0 Dip2/Utp12 Family PhaP_Bmeg PF09602.10 gi|20090044|ref|NP_616119.1| - 0.087 12.7 2.5 0.15 12.0 1.4 2.0 2 0 0 2 2 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Mitofilin PF09731.9 gi|20090044|ref|NP_616119.1| - 0.11 11.3 2.1 0.16 10.7 2.1 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein PIN_8 PF18476.1 gi|20090044|ref|NP_616119.1| - 0.15 11.9 4.0 0.072 12.9 1.7 1.6 2 0 0 2 2 1 0 PIN like domain LCIB_C_CA PF18599.1 gi|20090044|ref|NP_616119.1| - 0.15 11.3 0.4 0.35 10.1 0.4 1.6 1 0 0 1 1 1 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases DUF1664 PF07889.12 gi|20090044|ref|NP_616119.1| - 0.22 11.6 4.0 0.15 12.1 1.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Phasin PF05597.11 gi|20090044|ref|NP_616119.1| - 0.25 11.4 1.7 0.37 10.8 0.6 1.8 2 0 0 2 2 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) T3SS_needle_F PF09392.10 gi|20090044|ref|NP_616119.1| - 0.26 11.5 1.9 13 6.0 0.4 2.7 1 1 2 3 3 3 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF SF-assemblin PF06705.11 gi|20090044|ref|NP_616119.1| - 0.3 10.4 8.8 0.043 13.2 3.0 2.1 2 0 0 2 2 2 0 SF-assemblin/beta giardin OmpH PF03938.14 gi|20090044|ref|NP_616119.1| - 0.36 11.2 7.2 0.058 13.7 2.8 1.9 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) Fib_alpha PF08702.10 gi|20090044|ref|NP_616119.1| - 0.74 10.0 5.5 0.28 11.3 1.9 2.0 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Nbl1_Borealin_N PF10444.9 gi|20090044|ref|NP_616119.1| - 1.2 8.8 11.7 1.5 8.5 0.6 3.2 2 1 1 3 3 3 0 Nbl1 / Borealin N terminal GrpE PF01025.19 gi|20090044|ref|NP_616119.1| - 1.9 8.1 7.9 0.19 11.4 3.1 1.7 2 0 0 2 2 1 0 GrpE DUF4549 PF15082.6 gi|20090044|ref|NP_616119.1| - 4.3 7.1 6.8 6.1 6.6 0.6 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4549) DUF1640 PF07798.11 gi|20090044|ref|NP_616119.1| - 8.6 6.4 12.5 1.3 9.1 6.8 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1640) Glyco_trans_1_4 PF13692.6 gi|20090045|ref|NP_616120.1| - 3.4e-38 131.1 0.0 3e-18 66.5 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|20090045|ref|NP_616120.1| - 1.3e-36 125.7 0.0 6.3e-27 94.2 0.0 2.7 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|20090045|ref|NP_616120.1| - 2.8e-16 59.7 0.0 3.2e-07 30.6 0.0 3.1 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20090045|ref|NP_616120.1| - 3.7e-12 46.6 0.0 2.5e-11 43.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|20090046|ref|NP_616121.1| - 2.6e-14 53.1 0.0 6e-14 51.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|20090046|ref|NP_616121.1| - 3.1e-10 40.3 0.0 1.1e-09 38.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20090046|ref|NP_616121.1| - 1e-09 38.9 0.0 1.7e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3367 PF11847.8 gi|20090047|ref|NP_616122.1| - 0.25 9.2 0.2 0.39 8.5 0.2 1.2 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase LPG_synthase_TM PF03706.13 gi|20090048|ref|NP_616123.1| - 1.2e-42 146.5 18.8 1.4e-42 146.3 18.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF3447 PF11929.8 gi|20090048|ref|NP_616123.1| - 0.015 15.3 1.1 0.015 15.3 1.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3447) DUF3624 PF12292.8 gi|20090048|ref|NP_616123.1| - 3 8.3 10.1 3.2 8.2 0.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) Glycos_transf_1 PF00534.20 gi|20090049|ref|NP_616124.1| - 3.9e-45 153.5 0.3 5.8e-45 152.9 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20090049|ref|NP_616124.1| - 7.1e-29 100.9 0.0 1.1e-28 100.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20090049|ref|NP_616124.1| - 7.2e-14 52.1 0.0 1.2e-13 51.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|20090049|ref|NP_616124.1| - 1.3e-08 34.9 0.1 4.8e-08 33.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|20090049|ref|NP_616124.1| - 1.9e-07 31.7 0.0 2.4e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|20090049|ref|NP_616124.1| - 0.0016 18.8 0.0 0.0032 17.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|20090050|ref|NP_616125.1| - 7.3e-39 133.3 0.1 1e-38 132.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20090050|ref|NP_616125.1| - 7.6e-10 39.1 0.0 1e-09 38.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|20090050|ref|NP_616125.1| - 6.2e-09 35.7 0.0 9.7e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|20090050|ref|NP_616125.1| - 0.0052 17.2 0.0 0.0072 16.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|20090050|ref|NP_616125.1| - 0.031 14.8 0.0 0.051 14.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|20090050|ref|NP_616125.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 CAP59_mtransfer PF11735.8 gi|20090050|ref|NP_616125.1| - 0.11 12.2 0.0 5.9 6.5 0.0 2.1 1 1 1 2 2 2 0 Cryptococcal mannosyltransferase 1 TT1725 PF18324.1 gi|20090050|ref|NP_616125.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein TT1725 GDP_Man_Dehyd PF16363.5 gi|20090051|ref|NP_616126.1| - 6.8e-67 226.2 0.1 1.7e-66 224.9 0.1 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|20090051|ref|NP_616126.1| - 6.6e-61 205.8 0.0 7.9e-61 205.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|20090051|ref|NP_616126.1| - 5.3e-26 91.3 0.0 7.2e-26 90.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|20090051|ref|NP_616126.1| - 2e-21 76.4 0.0 1.2e-20 73.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|20090051|ref|NP_616126.1| - 7.5e-16 58.1 0.0 9.3e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|20090051|ref|NP_616126.1| - 2.2e-11 43.4 0.0 7.6e-11 41.7 0.0 1.9 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|20090051|ref|NP_616126.1| - 3.3e-08 33.6 0.0 8.1e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|20090051|ref|NP_616126.1| - 9.8e-06 25.3 0.0 1.6e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|20090051|ref|NP_616126.1| - 0.00011 21.8 0.1 0.00049 19.6 0.0 2.2 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|20090051|ref|NP_616126.1| - 0.00044 20.2 0.0 0.0029 17.5 0.0 2.0 1 1 0 1 1 1 1 KR domain Latrotoxin_C PF15658.6 gi|20090051|ref|NP_616126.1| - 0.077 12.8 0.2 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 Latrotoxin C-terminal domain Glycos_transf_1 PF00534.20 gi|20090052|ref|NP_616127.1| - 3.5e-37 127.6 0.8 5.3e-37 127.0 0.8 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20090052|ref|NP_616127.1| - 9e-26 90.9 0.8 1.7e-25 90.0 0.3 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20090052|ref|NP_616127.1| - 3.7e-22 79.1 0.0 9.7e-22 77.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|20090052|ref|NP_616127.1| - 4.5e-15 56.4 0.0 1.1e-14 55.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|20090052|ref|NP_616127.1| - 2.1e-08 34.4 0.0 3.9e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|20090052|ref|NP_616127.1| - 0.00038 19.4 0.0 0.00048 19.1 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|20090052|ref|NP_616127.1| - 0.017 15.1 0.1 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|20090053|ref|NP_616128.1| - 1.5e-21 76.9 0.0 2.3e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20090053|ref|NP_616128.1| - 0.0044 16.9 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|20090053|ref|NP_616128.1| - 0.019 14.4 0.0 0.05 13.1 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|20090053|ref|NP_616128.1| - 0.084 13.4 0.0 0.2 12.2 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 FMN_red PF03358.15 gi|20090055|ref|NP_616130.1| - 8.1e-14 51.6 0.0 1.3e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|20090055|ref|NP_616130.1| - 0.0016 18.6 0.1 0.0069 16.6 0.1 2.0 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.17 gi|20090055|ref|NP_616130.1| - 0.0026 17.5 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|20090055|ref|NP_616130.1| - 0.16 12.2 0.0 2.6 8.3 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain Glyco_hydro_15 PF00723.21 gi|20090056|ref|NP_616131.1| - 1.6e-16 60.1 0.1 2.2e-09 36.6 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 Glyco_transf_36 PF06165.11 gi|20090056|ref|NP_616131.1| - 0.064 12.7 0.2 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 36 Acetyltransf_1 PF00583.25 gi|20090057|ref|NP_616132.1| - 8.6e-15 55.0 0.1 1e-14 54.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20090057|ref|NP_616132.1| - 2.2e-11 44.0 0.3 3.3e-11 43.4 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20090057|ref|NP_616132.1| - 1.1e-10 41.5 0.1 1.2e-10 41.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20090057|ref|NP_616132.1| - 1.4e-05 25.1 0.2 2.6e-05 24.2 0.0 1.5 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|20090057|ref|NP_616132.1| - 0.00018 22.2 0.0 0.0002 22.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20090057|ref|NP_616132.1| - 0.004 17.3 0.1 0.0054 16.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|20090057|ref|NP_616132.1| - 0.025 14.3 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20090057|ref|NP_616132.1| - 0.1 12.6 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 FR47-like protein Peptidase_M20 PF01546.28 gi|20090058|ref|NP_616133.1| - 1.2e-24 87.2 0.0 1.4e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|20090058|ref|NP_616133.1| - 5.2e-08 32.8 0.0 1.2e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain NTP_transf_2 PF01909.23 gi|20090059|ref|NP_616134.1| - 9.7e-05 22.6 0.0 0.00027 21.2 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20090059|ref|NP_616134.1| - 0.083 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Condensation PF00668.20 gi|20090060|ref|NP_616135.1| - 8.1e-11 41.3 0.0 1.7e-10 40.2 0.0 1.4 1 1 0 1 1 1 1 Condensation domain PapA_C PF16911.5 gi|20090060|ref|NP_616135.1| - 5.8e-05 23.2 0.0 0.032 14.3 0.0 2.4 1 1 1 2 2 2 2 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus AATase PF07247.12 gi|20090060|ref|NP_616135.1| - 0.0093 14.6 0.0 1 7.9 0.0 2.7 3 0 0 3 3 3 2 Alcohol acetyltransferase PKD PF00801.20 gi|20090061|ref|NP_616136.1| - 1e-08 34.9 3.5 1e-08 34.9 3.5 2.7 2 0 0 2 2 2 1 PKD domain NPCBM_assoc PF10633.9 gi|20090061|ref|NP_616136.1| - 1.7e-05 24.9 3.9 0.014 15.6 0.1 4.1 2 1 2 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase PKD_3 PF16820.5 gi|20090061|ref|NP_616136.1| - 0.0026 17.5 0.6 0.0091 15.7 0.2 2.2 2 0 0 2 2 2 1 PKD-like domain bMG10 PF17973.1 gi|20090061|ref|NP_616136.1| - 0.007 16.6 0.5 0.034 14.3 0.1 2.3 2 1 0 2 2 2 1 Bacterial Alpha-2-macroglobulin MG10 domain NEAT PF05031.12 gi|20090061|ref|NP_616136.1| - 0.0083 16.7 4.0 2.3 8.8 0.2 2.9 3 0 0 3 3 3 2 Iron Transport-associated domain BiPBP_C PF06832.12 gi|20090061|ref|NP_616136.1| - 0.1 12.6 0.2 1.2 9.2 0.0 2.5 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family PGF-CTERM PF18204.1 gi|20090061|ref|NP_616136.1| - 0.12 12.3 0.3 0.12 12.3 0.3 1.8 2 0 0 2 2 2 0 PGF-CTERM motif DUF11 PF01345.18 gi|20090061|ref|NP_616136.1| - 0.36 11.1 6.0 0.37 11.1 0.5 3.2 2 1 1 3 3 3 0 Domain of unknown function DUF11 DUF4139 PF13598.6 gi|20090062|ref|NP_616137.1| - 2.7e-09 37.1 6.4 1.1e-08 35.1 6.4 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) DUF4140 PF13600.6 gi|20090062|ref|NP_616137.1| - 0.0002 21.7 0.4 0.0011 19.4 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) LSM PF01423.22 gi|20090062|ref|NP_616137.1| - 0.009 15.7 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 LSM domain Top6b_C PF18000.1 gi|20090062|ref|NP_616137.1| - 0.047 13.8 1.4 0.21 11.8 1.4 2.1 1 0 0 1 1 1 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain FecR PF04773.13 gi|20090062|ref|NP_616137.1| - 0.062 13.9 0.9 12 6.6 0.0 3.5 4 0 0 4 4 4 0 FecR protein Peripla_BP_2 PF01497.18 gi|20090063|ref|NP_616138.1| - 1.9e-23 83.3 1.1 3.3e-23 82.5 1.1 1.4 1 0 0 1 1 1 1 Periplasmic binding protein B12D PF06522.11 gi|20090063|ref|NP_616138.1| - 0.12 12.2 0.0 0.45 10.4 0.0 2.0 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit ABC_tran PF00005.27 gi|20090064|ref|NP_616139.1| - 1.2e-32 113.3 0.0 1.7e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090064|ref|NP_616139.1| - 2.1e-15 57.3 0.0 1.3e-07 31.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090064|ref|NP_616139.1| - 9.3e-07 28.5 0.0 9.4e-05 21.9 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20090064|ref|NP_616139.1| - 3.5e-06 27.0 0.3 0.016 14.9 0.6 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|20090064|ref|NP_616139.1| - 0.00014 22.3 0.1 0.012 16.0 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|20090064|ref|NP_616139.1| - 0.00043 20.2 0.3 0.00097 19.1 0.3 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|20090064|ref|NP_616139.1| - 0.0029 17.3 0.2 0.0069 16.1 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|20090064|ref|NP_616139.1| - 0.011 15.6 2.5 0.24 11.3 0.2 2.8 2 2 1 3 3 3 0 NTPase AAA_5 PF07728.14 gi|20090064|ref|NP_616139.1| - 0.012 15.6 0.2 0.054 13.5 0.2 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|20090064|ref|NP_616139.1| - 0.015 15.2 0.7 0.046 13.6 0.2 1.9 1 1 1 2 2 2 0 NACHT domain AAA_23 PF13476.6 gi|20090064|ref|NP_616139.1| - 0.015 15.8 0.7 0.021 15.3 0.3 1.4 2 0 0 2 2 1 0 AAA domain AAA_22 PF13401.6 gi|20090064|ref|NP_616139.1| - 0.02 15.2 0.1 0.069 13.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|20090064|ref|NP_616139.1| - 0.025 13.7 0.6 0.067 12.4 0.5 1.7 1 1 1 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 gi|20090064|ref|NP_616139.1| - 0.03 14.4 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|20090064|ref|NP_616139.1| - 0.041 14.3 0.0 0.074 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|20090064|ref|NP_616139.1| - 0.051 13.6 0.2 0.093 12.7 0.2 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|20090064|ref|NP_616139.1| - 0.055 13.2 0.1 0.094 12.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|20090064|ref|NP_616139.1| - 0.06 12.7 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|20090064|ref|NP_616139.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|20090064|ref|NP_616139.1| - 0.21 11.3 0.1 0.49 10.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|20090064|ref|NP_616139.1| - 0.28 11.5 1.1 1.3 9.3 0.2 2.4 2 1 1 3 3 3 0 AAA domain FecCD PF01032.18 gi|20090065|ref|NP_616140.1| - 6.6e-88 294.7 28.7 8.3e-88 294.4 28.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20090065|ref|NP_616140.1| - 1.9e-06 27.6 18.2 1.9e-06 27.6 18.2 1.7 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|20090066|ref|NP_616141.1| - 7e-22 78.1 0.0 9.4e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF4961 PF16328.5 gi|20090066|ref|NP_616141.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4961) E1_DerP2_DerF2 PF02221.15 gi|20090066|ref|NP_616141.1| - 0.15 12.5 0.1 1 9.8 0.0 2.1 2 0 0 2 2 2 0 ML domain Reticulon PF02453.17 gi|20090066|ref|NP_616141.1| - 0.16 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Reticulon Radical_SAM PF04055.21 gi|20090068|ref|NP_616143.1| - 8e-10 39.3 0.0 3.1e-09 37.4 0.0 1.9 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20090068|ref|NP_616143.1| - 1.8e-05 25.1 0.2 3.9e-05 23.9 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Auto_anti-p27 PF06677.12 gi|20090068|ref|NP_616143.1| - 0.015 15.5 2.0 0.064 13.4 0.0 2.9 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Peripla_BP_2 PF01497.18 gi|20090068|ref|NP_616143.1| - 0.042 13.4 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Fer4_NifH PF00142.18 gi|20090069|ref|NP_616144.1| - 1.6e-128 427.8 2.9 1.8e-128 427.7 2.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|20090069|ref|NP_616144.1| - 8e-09 35.6 0.0 1.8e-08 34.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20090069|ref|NP_616144.1| - 4.2e-06 26.8 0.3 4.6e-05 23.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|20090069|ref|NP_616144.1| - 0.00014 21.4 0.1 0.0078 15.7 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|20090069|ref|NP_616144.1| - 0.0032 16.7 0.0 0.0071 15.6 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase DNA_pol3_delta2 PF13177.6 gi|20090069|ref|NP_616144.1| - 0.031 14.1 0.0 0.32 10.8 0.0 2.1 1 1 0 1 1 1 0 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|20090069|ref|NP_616144.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Pyridox_ox_2 PF12900.7 gi|20090070|ref|NP_616145.1| - 3.8e-27 95.0 0.0 4.4e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|20090070|ref|NP_616145.1| - 2e-06 27.9 0.0 3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1838 PF08894.11 gi|20090070|ref|NP_616145.1| - 0.03 14.0 0.1 0.049 13.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1838) AnfO_nitrog PF09582.10 gi|20090071|ref|NP_616146.1| - 3.9e-54 182.9 0.0 6.2e-54 182.2 0.0 1.3 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) Oxidored_nitro PF00148.19 gi|20090072|ref|NP_616147.1| - 8.7e-117 390.2 0.0 9.8e-117 390.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase AnfG_VnfG PF03139.15 gi|20090073|ref|NP_616148.1| - 4.2e-52 174.9 0.2 4.7e-52 174.8 0.2 1.0 1 0 0 1 1 1 1 Vanadium/alternative nitrogenase delta subunit Oxidored_nitro PF00148.19 gi|20090074|ref|NP_616149.1| - 1.2e-97 327.2 0.0 1.3e-97 327.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase HEPN_RES_NTD1 PF18870.1 gi|20090074|ref|NP_616149.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 HEPN/RES N-terminal domain 1 P-II PF00543.22 gi|20090075|ref|NP_616150.1| - 2.5e-35 121.2 0.2 2.8e-35 121.0 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.22 gi|20090076|ref|NP_616151.1| - 1.3e-29 102.7 0.5 1.5e-29 102.6 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|20090076|ref|NP_616151.1| - 0.00096 19.3 0.4 0.018 15.2 0.4 2.4 1 1 0 1 1 1 1 Cyclic-di-AMP receptor Fer4_NifH PF00142.18 gi|20090077|ref|NP_616152.1| - 1.6e-128 427.8 2.9 1.8e-128 427.7 2.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|20090077|ref|NP_616152.1| - 8e-09 35.6 0.0 1.8e-08 34.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20090077|ref|NP_616152.1| - 4.2e-06 26.8 0.3 4.6e-05 23.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|20090077|ref|NP_616152.1| - 0.00014 21.4 0.1 0.0078 15.7 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|20090077|ref|NP_616152.1| - 0.0032 16.7 0.0 0.0071 15.6 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase DNA_pol3_delta2 PF13177.6 gi|20090077|ref|NP_616152.1| - 0.031 14.1 0.0 0.32 10.8 0.0 2.1 1 1 0 1 1 1 0 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|20090077|ref|NP_616152.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain P-II PF00543.22 gi|20090078|ref|NP_616153.1| - 9e-29 100.1 0.1 1e-28 99.9 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|20090078|ref|NP_616153.1| - 0.00023 21.3 0.1 0.0044 17.2 0.1 2.3 1 1 1 2 2 2 1 Cyclic-di-AMP receptor HisG_C PF08029.11 gi|20090078|ref|NP_616153.1| - 0.095 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 HisG, C-terminal domain P-II PF00543.22 gi|20090079|ref|NP_616154.1| - 1.1e-34 119.1 0.3 1.4e-34 118.8 0.3 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|20090080|ref|NP_616155.1| - 1.7e-108 362.9 0.1 1.9e-108 362.7 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peripla_BP_2 PF01497.18 gi|20090080|ref|NP_616155.1| - 0.0068 16.0 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Periplasmic binding protein HEPN_RES_NTD1 PF18870.1 gi|20090080|ref|NP_616155.1| - 0.086 13.0 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 HEPN/RES N-terminal domain 1 AnfG_VnfG PF03139.15 gi|20090081|ref|NP_616156.1| - 4.5e-45 152.3 0.1 5e-45 152.2 0.1 1.0 1 0 0 1 1 1 1 Vanadium/alternative nitrogenase delta subunit Oxidored_nitro PF00148.19 gi|20090082|ref|NP_616157.1| - 1.8e-123 412.3 0.0 2e-123 412.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Lipase_GDSL_2 PF13472.6 gi|20090082|ref|NP_616157.1| - 0.047 14.1 0.0 0.085 13.3 0.0 1.4 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Oxidored_nitro PF00148.19 gi|20090083|ref|NP_616158.1| - 1.9e-73 247.5 0.4 7.2e-73 245.6 0.4 1.9 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|20090084|ref|NP_616159.1| - 4e-95 318.9 0.0 4.5e-95 318.7 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase RNA_pol_Rpb2_7 PF04560.20 gi|20090084|ref|NP_616159.1| - 0.11 12.9 0.1 1.2 9.6 0.0 2.6 2 1 0 2 2 2 0 RNA polymerase Rpb2, domain 7 Nitro_FeMo-Co PF02579.17 gi|20090085|ref|NP_616160.1| - 2.3e-18 66.3 0.0 3.8e-18 65.6 0.0 1.4 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Peripla_BP_2 PF01497.18 gi|20090086|ref|NP_616161.1| - 6.5e-29 101.2 0.1 1e-28 100.6 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein KdpD PF02702.17 gi|20090086|ref|NP_616161.1| - 0.058 12.8 0.2 0.43 10.0 0.1 2.1 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain Aconitase_C PF00694.19 gi|20090087|ref|NP_616162.1| - 4.8e-20 72.2 0.0 6.6e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|20090087|ref|NP_616162.1| - 9.3e-05 22.2 0.0 0.0095 15.6 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus MORN_2 PF07661.13 gi|20090088|ref|NP_616163.1| - 0.00079 19.4 0.0 14 6.3 0.0 4.9 4 0 0 4 4 4 2 MORN repeat variant HMGL-like PF00682.19 gi|20090089|ref|NP_616164.1| - 3e-74 249.9 0.0 3.4e-74 249.8 0.0 1.0 1 0 0 1 1 1 1 HMGL-like HMGL-like PF00682.19 gi|20090090|ref|NP_616165.1| - 5.4e-15 55.7 0.0 8.9e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 HMGL-like ABC_tran PF00005.27 gi|20090091|ref|NP_616166.1| - 6e-17 62.5 0.0 9.3e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090091|ref|NP_616166.1| - 6.6e-10 39.3 0.0 0.0014 18.5 0.2 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090091|ref|NP_616166.1| - 1.6e-06 27.7 0.2 2.7e-06 27.0 0.2 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|20090091|ref|NP_616166.1| - 0.00017 21.9 0.7 0.0014 18.9 0.3 2.4 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|20090091|ref|NP_616166.1| - 0.0014 19.0 0.0 0.0052 17.2 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.6 gi|20090091|ref|NP_616166.1| - 0.0019 18.5 0.1 0.0038 17.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|20090091|ref|NP_616166.1| - 0.0052 16.5 0.0 0.011 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|20090091|ref|NP_616166.1| - 0.0096 15.9 0.0 0.025 14.5 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|20090091|ref|NP_616166.1| - 0.011 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20090091|ref|NP_616166.1| - 0.019 15.5 0.1 0.038 14.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|20090091|ref|NP_616166.1| - 0.02 14.9 0.1 0.82 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.18 gi|20090091|ref|NP_616166.1| - 0.023 14.1 0.0 0.054 12.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.6 gi|20090091|ref|NP_616166.1| - 0.023 14.4 0.0 0.15 11.7 0.0 2.2 2 1 1 3 3 3 0 AAA ATPase domain DUF1858 PF08984.11 gi|20090091|ref|NP_616166.1| - 0.024 14.8 0.0 0.079 13.1 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1858) PhoH PF02562.16 gi|20090091|ref|NP_616166.1| - 0.04 13.4 0.0 0.089 12.2 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein RsgA_GTPase PF03193.16 gi|20090091|ref|NP_616166.1| - 0.054 13.4 0.1 0.37 10.7 0.0 2.3 1 1 2 3 3 3 0 RsgA GTPase ATPase_2 PF01637.18 gi|20090091|ref|NP_616166.1| - 0.096 12.6 1.5 0.97 9.3 0.0 2.4 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|20090091|ref|NP_616166.1| - 0.14 11.9 1.0 0.29 10.9 0.3 2.1 2 1 0 2 2 2 0 DEAD/DEAH box helicase cobW PF02492.19 gi|20090092|ref|NP_616167.1| - 3.4e-10 39.8 0.2 5.6e-10 39.1 0.2 1.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|20090092|ref|NP_616167.1| - 3.1e-05 23.1 0.2 0.0052 15.8 0.1 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|20090092|ref|NP_616167.1| - 0.00038 20.0 0.1 0.00053 19.5 0.1 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MobB PF03205.14 gi|20090092|ref|NP_616167.1| - 0.0027 17.6 0.1 0.0045 16.9 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|20090092|ref|NP_616167.1| - 0.0029 17.5 0.1 0.0053 16.7 0.1 1.4 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.17 gi|20090092|ref|NP_616167.1| - 0.009 15.8 0.0 0.052 13.3 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DnaB_C PF03796.15 gi|20090092|ref|NP_616167.1| - 0.013 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain SRP54 PF00448.22 gi|20090092|ref|NP_616167.1| - 0.022 14.4 0.1 0.27 10.8 0.0 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|20090092|ref|NP_616167.1| - 0.027 14.9 0.0 0.028 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|20090092|ref|NP_616167.1| - 0.059 13.7 0.1 0.091 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|20090092|ref|NP_616167.1| - 0.066 13.1 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_35 PF14516.6 gi|20090092|ref|NP_616167.1| - 0.075 11.8 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.6 gi|20090092|ref|NP_616167.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|20090092|ref|NP_616167.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Redoxin PF08534.10 gi|20090092|ref|NP_616167.1| - 0.14 11.8 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 Redoxin SBP_bac_6 PF13343.6 gi|20090093|ref|NP_616168.1| - 6e-71 238.7 0.0 7e-71 238.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Peripla_BP_2 PF01497.18 gi|20090094|ref|NP_616169.1| - 6e-22 78.4 0.2 8.7e-22 77.8 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|20090095|ref|NP_616170.1| - 1.7e-19 70.3 0.8 2.5e-19 69.8 0.8 1.2 1 0 0 1 1 1 1 Periplasmic binding protein sCache_3_2 PF17203.4 gi|20090095|ref|NP_616170.1| - 0.067 13.3 0.2 0.12 12.5 0.2 1.4 1 0 0 1 1 1 0 Single cache domain 3 Peripla_BP_2 PF01497.18 gi|20090096|ref|NP_616171.1| - 3.9e-21 75.7 1.4 5.3e-21 75.3 1.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF5119 PF17145.4 gi|20090096|ref|NP_616171.1| - 0.013 15.5 0.1 0.023 14.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5119) ABC_tran PF00005.27 gi|20090097|ref|NP_616172.1| - 3.9e-30 105.1 0.0 5.6e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090097|ref|NP_616172.1| - 1.8e-14 54.3 0.6 4.2e-07 30.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090097|ref|NP_616172.1| - 4.1e-09 36.2 0.2 7.8e-09 35.3 0.2 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20090097|ref|NP_616172.1| - 4.2e-06 26.7 1.7 0.00022 21.0 0.8 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|20090097|ref|NP_616172.1| - 1.2e-05 25.9 0.2 1.8e-05 25.3 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090097|ref|NP_616172.1| - 2e-05 24.3 0.0 4.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|20090097|ref|NP_616172.1| - 0.00019 20.9 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|20090097|ref|NP_616172.1| - 0.0027 18.1 0.1 0.0052 17.2 0.1 1.5 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|20090097|ref|NP_616172.1| - 0.0038 17.6 0.4 0.024 15.1 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|20090097|ref|NP_616172.1| - 0.0043 17.0 0.1 0.0091 15.9 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|20090097|ref|NP_616172.1| - 0.0061 16.3 0.2 0.038 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20090097|ref|NP_616172.1| - 0.0067 16.7 0.4 0.03 14.6 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|20090097|ref|NP_616172.1| - 0.0083 16.1 0.0 0.033 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|20090097|ref|NP_616172.1| - 0.015 15.3 0.1 0.25 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|20090097|ref|NP_616172.1| - 0.016 14.1 0.0 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_16 PF13191.6 gi|20090097|ref|NP_616172.1| - 0.019 15.4 0.0 0.031 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|20090097|ref|NP_616172.1| - 0.02 15.4 0.0 0.057 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|20090097|ref|NP_616172.1| - 0.022 14.4 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|20090097|ref|NP_616172.1| - 0.043 13.7 0.1 0.079 12.9 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain PhoH PF02562.16 gi|20090097|ref|NP_616172.1| - 0.052 13.0 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|20090097|ref|NP_616172.1| - 0.052 13.3 0.1 0.37 10.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|20090097|ref|NP_616172.1| - 0.059 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|20090097|ref|NP_616172.1| - 0.066 13.1 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_10 PF12846.7 gi|20090097|ref|NP_616172.1| - 0.066 12.1 0.1 0.1 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.6 gi|20090097|ref|NP_616172.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20090097|ref|NP_616172.1| - 0.16 11.8 0.2 0.31 11.0 0.2 1.4 1 0 0 1 1 1 0 NACHT domain FecCD PF01032.18 gi|20090098|ref|NP_616173.1| - 1.2e-93 313.5 30.1 1.5e-93 313.2 30.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20090098|ref|NP_616173.1| - 2e-05 24.3 18.1 2e-05 24.3 18.1 1.8 2 0 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|20090099|ref|NP_616174.1| - 2e-32 112.6 0.0 3.3e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090099|ref|NP_616174.1| - 1.3e-10 41.6 1.6 0.00035 20.5 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090099|ref|NP_616174.1| - 1.3e-07 31.3 0.1 1.5e-06 27.8 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20090099|ref|NP_616174.1| - 3e-06 27.9 1.1 6.3e-06 26.8 0.9 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|20090099|ref|NP_616174.1| - 0.0023 17.9 0.0 0.0046 16.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|20090099|ref|NP_616174.1| - 0.0024 17.6 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|20090099|ref|NP_616174.1| - 0.0044 17.4 0.5 0.048 14.1 0.5 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|20090099|ref|NP_616174.1| - 0.0051 17.1 0.5 0.081 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|20090099|ref|NP_616174.1| - 0.0058 16.6 0.3 0.014 15.3 0.3 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|20090099|ref|NP_616174.1| - 0.024 15.0 0.0 0.053 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|20090099|ref|NP_616174.1| - 0.025 14.8 0.1 0.13 12.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|20090099|ref|NP_616174.1| - 0.038 12.6 0.0 1.5 7.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|20090099|ref|NP_616174.1| - 0.057 12.8 0.3 1.7 8.0 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein PduV-EutP PF10662.9 gi|20090099|ref|NP_616174.1| - 0.072 12.8 0.1 0.23 11.2 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|20090099|ref|NP_616174.1| - 0.079 12.7 0.1 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|20090099|ref|NP_616174.1| - 0.091 12.1 0.0 0.3 10.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|20090099|ref|NP_616174.1| - 0.091 12.9 0.2 0.19 11.9 0.2 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|20090099|ref|NP_616174.1| - 0.094 11.9 0.0 0.22 10.7 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|20090099|ref|NP_616174.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|20090099|ref|NP_616174.1| - 0.13 12.3 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|20090099|ref|NP_616174.1| - 0.16 12.5 0.4 0.64 10.6 0.3 2.2 1 1 1 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|20090100|ref|NP_616175.1| - 4.4e-21 75.5 15.2 4.4e-21 75.5 15.2 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GNAT_acetyltran PF12746.7 gi|20090100|ref|NP_616175.1| - 0.054 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 GNAT acetyltransferase SBP_bac_11 PF13531.6 gi|20090101|ref|NP_616176.1| - 5.6e-55 186.6 0.1 6.5e-55 186.4 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|20090101|ref|NP_616176.1| - 1.4e-22 81.1 0.2 1.1e-10 41.9 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|20090101|ref|NP_616176.1| - 1.9e-06 27.9 0.0 0.0011 18.9 0.1 2.1 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|20090101|ref|NP_616176.1| - 2.6e-06 27.2 0.1 4e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like_2 PF12849.7 gi|20090101|ref|NP_616176.1| - 3.3e-06 27.0 0.7 9.3e-05 22.2 0.2 2.1 1 1 0 2 2 2 1 PBP superfamily domain SBP_bac_6 PF13343.6 gi|20090101|ref|NP_616176.1| - 6.1e-06 25.8 0.0 9.5e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|20090101|ref|NP_616176.1| - 0.0017 17.5 0.1 0.0076 15.4 0.1 1.9 1 1 0 1 1 1 1 PBP superfamily domain TOBE PF03459.17 gi|20090102|ref|NP_616177.1| - 2.5e-16 59.7 0.0 2.7e-16 59.6 0.0 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|20090102|ref|NP_616177.1| - 0.021 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 TOBE domain p6 PF17548.2 gi|20090102|ref|NP_616177.1| - 0.051 13.5 0.3 0.055 13.4 0.3 1.1 1 0 0 1 1 1 0 Histone-like Protein p6 TOBE PF03459.17 gi|20090103|ref|NP_616178.1| - 7.2e-15 55.0 0.1 8.3e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|20090103|ref|NP_616178.1| - 0.093 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 TOBE domain SLBB PF10531.9 gi|20090103|ref|NP_616178.1| - 0.1 12.5 0.2 0.18 11.7 0.2 1.4 1 0 0 1 1 1 0 SLBB domain Molybdopterin PF00384.22 gi|20090105|ref|NP_616180.1| - 2.7e-14 53.0 0.0 8.8e-11 41.4 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|20090105|ref|NP_616180.1| - 0.028 14.2 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|20090105|ref|NP_616180.1| - 0.047 13.4 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DDE_Tnp_1 PF01609.21 gi|20090106|ref|NP_616181.1| - 3.5e-05 23.5 0.0 6.7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain SIR2_2 PF13289.6 gi|20090107|ref|NP_616182.1| - 3.7e-12 46.6 0.1 1.2e-11 44.9 0.1 1.9 1 0 0 1 1 1 1 SIR2-like domain NACHT PF05729.12 gi|20090107|ref|NP_616182.1| - 0.00016 21.7 0.1 0.0032 17.4 0.1 2.5 1 1 0 1 1 1 1 NACHT domain Tn7_Tnp_TnsA_C PF08721.11 gi|20090107|ref|NP_616182.1| - 0.19 12.4 2.8 4.4 8.0 1.3 4.0 2 0 0 2 2 2 0 TnsA endonuclease C terminal DUF4460 PF14687.6 gi|20090107|ref|NP_616182.1| - 0.88 9.6 8.3 20 5.3 2.4 4.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4460) ABC_tran PF00005.27 gi|20090108|ref|NP_616183.1| - 1e-30 107.0 0.0 1.6e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20090108|ref|NP_616183.1| - 2.5e-09 37.5 0.1 1.2e-08 35.4 0.1 2.1 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|20090108|ref|NP_616183.1| - 1.8e-08 34.8 0.1 3.4e-07 30.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20090108|ref|NP_616183.1| - 9.1e-05 22.9 0.1 0.00018 22.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|20090108|ref|NP_616183.1| - 0.00031 20.2 0.0 0.002 17.6 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20090108|ref|NP_616183.1| - 0.00038 20.4 0.0 0.00067 19.6 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase DUF87 PF01935.17 gi|20090108|ref|NP_616183.1| - 0.00057 20.0 0.0 0.0012 19.0 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|20090108|ref|NP_616183.1| - 0.0016 17.4 0.0 0.007 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain TniB PF05621.11 gi|20090108|ref|NP_616183.1| - 0.002 17.6 0.0 0.21 11.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein NB-ARC PF00931.22 gi|20090108|ref|NP_616183.1| - 0.0024 17.1 0.0 0.0034 16.6 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|20090108|ref|NP_616183.1| - 0.003 18.0 0.1 0.02 15.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|20090108|ref|NP_616183.1| - 0.0036 17.2 0.0 0.011 15.6 0.0 1.8 2 0 0 2 2 1 1 NACHT domain RNA_helicase PF00910.22 gi|20090108|ref|NP_616183.1| - 0.0036 17.7 0.0 0.0063 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase DEAD PF00270.29 gi|20090108|ref|NP_616183.1| - 0.0069 16.2 0.0 0.91 9.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|20090108|ref|NP_616183.1| - 0.008 15.8 0.3 0.023 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20090108|ref|NP_616183.1| - 0.011 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|20090108|ref|NP_616183.1| - 0.014 15.6 0.1 0.027 14.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|20090108|ref|NP_616183.1| - 0.016 15.2 0.0 0.034 14.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|20090108|ref|NP_616183.1| - 0.019 15.5 0.0 0.037 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|20090108|ref|NP_616183.1| - 0.02 14.6 0.1 0.046 13.4 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|20090108|ref|NP_616183.1| - 0.029 14.3 0.0 0.05 13.5 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|20090108|ref|NP_616183.1| - 0.031 13.5 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Rad17 PF03215.15 gi|20090108|ref|NP_616183.1| - 0.032 14.2 0.3 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|20090108|ref|NP_616183.1| - 0.034 13.9 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|20090108|ref|NP_616183.1| - 0.034 13.5 0.0 0.068 12.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|20090108|ref|NP_616183.1| - 0.039 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|20090108|ref|NP_616183.1| - 0.064 13.2 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Hpr_kinase_C PF07475.12 gi|20090108|ref|NP_616183.1| - 0.067 12.7 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain NTPase_1 PF03266.15 gi|20090108|ref|NP_616183.1| - 0.067 13.1 0.1 1.5 8.8 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|20090108|ref|NP_616183.1| - 0.071 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|20090108|ref|NP_616183.1| - 0.071 12.3 0.2 1.8 7.7 0.1 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_28 PF13521.6 gi|20090108|ref|NP_616183.1| - 0.11 12.7 0.0 0.35 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|20090108|ref|NP_616183.1| - 0.13 12.3 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|20090108|ref|NP_616183.1| - 0.13 12.3 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain MobB PF03205.14 gi|20090108|ref|NP_616183.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|20090108|ref|NP_616183.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ADK PF00406.22 gi|20090108|ref|NP_616183.1| - 0.17 12.0 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Adenylate kinase AAA_30 PF13604.6 gi|20090108|ref|NP_616183.1| - 0.17 11.6 0.1 3.5 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|20090108|ref|NP_616183.1| - 0.19 11.7 0.1 0.34 10.9 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|20090109|ref|NP_616184.1| - 8.2e-18 65.2 0.0 1.1e-17 64.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20090109|ref|NP_616184.1| - 6.3e-16 58.7 0.3 1.8e-15 57.2 0.2 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.6 gi|20090109|ref|NP_616184.1| - 3.7e-05 23.4 0.0 6.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|20090109|ref|NP_616184.1| - 0.00069 19.5 0.0 1 9.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|20090109|ref|NP_616184.1| - 0.0096 15.3 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|20090109|ref|NP_616184.1| - 0.023 15.1 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Mersacidin PF16934.5 gi|20090109|ref|NP_616184.1| - 0.049 13.4 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 Two-component Enterococcus faecalis cytolysin (EFC) SMC_N PF02463.19 gi|20090109|ref|NP_616184.1| - 0.061 12.7 0.1 0.22 11.0 0.1 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain HHH_4 PF14490.6 gi|20090109|ref|NP_616184.1| - 0.066 13.2 0.0 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain AAA_22 PF13401.6 gi|20090109|ref|NP_616184.1| - 0.088 13.1 0.0 0.34 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF4466 PF14725.6 gi|20090109|ref|NP_616184.1| - 0.096 12.2 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4466) NACHT PF05729.12 gi|20090109|ref|NP_616184.1| - 0.15 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.22 gi|20090110|ref|NP_616185.1| - 4.4e-30 104.8 11.8 4.4e-30 104.8 11.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20090110|ref|NP_616185.1| - 6.8e-08 32.4 2.0 3.7e-07 30.0 0.1 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Ost5 PF05251.12 gi|20090110|ref|NP_616185.1| - 0.0015 18.8 1.5 0.0015 18.8 1.5 3.5 4 0 0 4 4 4 1 Oligosaccharyltransferase subunit 5 BPD_transp_1 PF00528.22 gi|20090111|ref|NP_616186.1| - 7.6e-39 133.4 13.6 7.6e-39 133.4 13.6 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.12 gi|20090112|ref|NP_616187.1| - 2.9e-24 85.6 0.0 4.7e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090112|ref|NP_616187.1| - 3.8e-22 78.8 0.0 6.6e-22 78.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090112|ref|NP_616187.1| - 8.8e-17 61.3 0.0 1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090112|ref|NP_616187.1| - 3.3e-13 49.5 0.0 9e-13 48.1 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20090112|ref|NP_616187.1| - 1.7e-12 47.5 0.0 2.6e-12 46.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090112|ref|NP_616187.1| - 7.7e-11 42.6 0.0 1.5e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090112|ref|NP_616187.1| - 1.2e-06 28.2 0.0 2.1e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|20090112|ref|NP_616187.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20090112|ref|NP_616187.1| - 0.00051 19.5 0.0 0.00069 19.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|20090112|ref|NP_616187.1| - 0.00069 18.8 0.0 0.00084 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|20090112|ref|NP_616187.1| - 0.001 18.5 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GidB PF02527.15 gi|20090112|ref|NP_616187.1| - 0.0023 17.3 0.0 0.007 15.7 0.0 1.7 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_2 PF00891.18 gi|20090112|ref|NP_616187.1| - 0.0028 17.0 0.0 0.0033 16.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain AdoMet_MTase PF07757.13 gi|20090112|ref|NP_616187.1| - 0.012 16.0 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase TehB PF03848.14 gi|20090112|ref|NP_616187.1| - 0.027 13.9 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|20090112|ref|NP_616187.1| - 0.031 13.9 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase SAM_MT PF04445.13 gi|20090112|ref|NP_616187.1| - 0.047 13.1 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase TPMT PF05724.11 gi|20090112|ref|NP_616187.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.4 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|20090112|ref|NP_616187.1| - 0.18 11.8 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|20090112|ref|NP_616187.1| - 0.21 11.5 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SBP_bac_5 PF00496.22 gi|20090113|ref|NP_616188.1| - 5.7e-90 302.0 2.8 7.2e-90 301.7 2.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_5 PF00496.22 gi|20090114|ref|NP_616189.1| - 4.8e-89 299.0 2.3 5.9e-89 298.7 2.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.12 gi|20090115|ref|NP_616190.1| - 1.4e-23 83.3 0.0 2.9e-23 82.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090115|ref|NP_616190.1| - 4.8e-22 78.5 0.0 1.1e-21 77.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090115|ref|NP_616190.1| - 6.8e-21 74.7 0.0 9.5e-21 74.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090115|ref|NP_616190.1| - 5.4e-15 55.6 0.0 8.2e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090115|ref|NP_616190.1| - 3.6e-12 46.1 0.0 5.4e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20090115|ref|NP_616190.1| - 1.5e-11 44.9 0.0 2.6e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20090115|ref|NP_616190.1| - 1.5e-06 27.8 0.0 2.3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|20090115|ref|NP_616190.1| - 5.2e-06 26.1 0.1 9.4e-06 25.3 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|20090115|ref|NP_616190.1| - 0.00033 20.5 0.0 0.00059 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|20090115|ref|NP_616190.1| - 0.0025 17.3 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|20090115|ref|NP_616190.1| - 0.0037 17.3 0.0 0.0062 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|20090115|ref|NP_616190.1| - 0.0094 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G UPF0020 PF01170.18 gi|20090115|ref|NP_616190.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|20090115|ref|NP_616190.1| - 0.015 14.8 0.0 0.037 13.5 0.0 1.6 1 0 0 1 1 1 0 Putative methyltransferase N2227 PF07942.12 gi|20090115|ref|NP_616190.1| - 0.018 14.3 0.0 0.36 10.0 0.0 2.1 1 1 1 2 2 2 0 N2227-like protein TPMT PF05724.11 gi|20090115|ref|NP_616190.1| - 0.019 14.7 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) MetW PF07021.12 gi|20090115|ref|NP_616190.1| - 0.028 14.0 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Mur_ligase PF01225.25 gi|20090115|ref|NP_616190.1| - 0.031 14.6 0.0 0.091 13.1 0.0 1.8 1 0 0 1 1 1 0 Mur ligase family, catalytic domain RrnaAD PF00398.20 gi|20090115|ref|NP_616190.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|20090115|ref|NP_616190.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HAD_2 PF13419.6 gi|20090116|ref|NP_616191.1| - 2.2e-23 83.3 0.9 4.2e-23 82.3 0.9 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20090116|ref|NP_616191.1| - 7.4e-12 46.0 0.0 1.8e-11 44.7 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20090116|ref|NP_616191.1| - 9.6e-09 35.2 0.0 1.5e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|20090116|ref|NP_616191.1| - 0.015 15.7 0.3 0.098 13.1 0.3 2.2 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|20090116|ref|NP_616191.1| - 0.032 13.9 0.2 0.54 9.9 0.2 2.2 1 1 0 1 1 1 0 Polynucleotide kinase 3 phosphatase Ribosomal_S10 PF00338.22 gi|20090119|ref|NP_616194.1| - 3.3e-27 94.6 0.0 3.7e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|20090119|ref|NP_616194.1| - 0.052 14.4 0.0 0.12 13.2 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|20090120|ref|NP_616195.1| - 1.3e-57 194.5 0.0 1.9e-57 194.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|20090120|ref|NP_616195.1| - 8.5e-37 125.9 0.1 1.9e-36 124.7 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|20090120|ref|NP_616195.1| - 1.6e-15 57.3 2.6 4.5e-15 55.8 1.2 2.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|20090120|ref|NP_616195.1| - 5.9e-06 26.3 0.0 9.7e-05 22.4 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|20090120|ref|NP_616195.1| - 0.0014 18.5 1.0 0.0038 17.1 1.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 FeoB_N PF02421.18 gi|20090120|ref|NP_616195.1| - 0.015 14.8 0.0 0.48 9.9 0.0 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Roc PF08477.13 gi|20090120|ref|NP_616195.1| - 0.023 14.9 0.0 5.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|20090120|ref|NP_616195.1| - 0.027 14.5 0.0 5.6 7.0 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Gtr1_RagA PF04670.12 gi|20090120|ref|NP_616195.1| - 0.04 13.3 0.0 0.22 10.9 0.0 1.9 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|20090120|ref|NP_616195.1| - 0.05 13.5 0.3 1.1 9.1 0.1 2.3 1 1 1 2 2 2 0 RsgA GTPase GTP_EFTU PF00009.27 gi|20090121|ref|NP_616196.1| - 4.3e-65 218.9 0.3 7.1e-65 218.2 0.3 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|20090121|ref|NP_616196.1| - 8.9e-30 103.0 0.4 2.6e-28 98.2 0.0 3.1 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|20090121|ref|NP_616196.1| - 4.4e-25 87.5 0.0 1.3e-24 86.0 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|20090121|ref|NP_616196.1| - 5.4e-24 84.1 1.2 5.4e-24 84.1 1.2 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|20090121|ref|NP_616196.1| - 3.5e-15 56.2 0.4 1.2e-14 54.4 0.4 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|20090121|ref|NP_616196.1| - 5.7e-05 23.2 0.1 0.00021 21.4 0.1 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|20090121|ref|NP_616196.1| - 0.00076 19.3 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|20090121|ref|NP_616196.1| - 0.045 13.2 0.3 0.61 9.5 0.1 2.5 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S7 PF00177.21 gi|20090122|ref|NP_616197.1| - 1.1e-36 125.7 4.9 1.4e-36 125.4 4.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2420 PF10336.9 gi|20090122|ref|NP_616197.1| - 0.031 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) Ribosom_S12_S23 PF00164.25 gi|20090123|ref|NP_616198.1| - 2.3e-47 159.3 0.4 2.8e-47 159.0 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|161484938|ref|NP_616199.2| - 1.1e-19 70.0 2.4 1.5e-13 50.4 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|161484938|ref|NP_616199.2| - 5.1e-17 61.7 0.5 8.8e-15 54.6 0.1 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|161484938|ref|NP_616199.2| - 7.8e-07 28.8 0.3 0.05 13.4 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|161484938|ref|NP_616199.2| - 2.1e-06 27.5 1.3 0.064 13.1 0.0 2.7 2 1 1 3 3 3 2 KH domain RRM_1 PF00076.22 gi|161484938|ref|NP_616199.2| - 0.076 12.8 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Ribosomal_L7Ae PF01248.26 gi|20090125|ref|NP_616200.1| - 1.1e-17 63.6 0.4 1.2e-17 63.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BRCT_3 PF18428.1 gi|20090125|ref|NP_616200.1| - 0.012 15.7 0.1 0.016 15.3 0.1 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain RNA_pol_Rpb1_5 PF04998.17 gi|20090126|ref|NP_616201.1| - 3.4e-54 184.1 0.7 6.5e-54 183.1 0.7 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1947 PF09183.10 gi|20090126|ref|NP_616201.1| - 0.042 14.1 0.1 0.19 12.0 0.1 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) RNA_pol_Rpb1_1 PF04997.12 gi|20090127|ref|NP_616202.1| - 2.3e-106 355.7 0.0 3.8e-106 354.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|20090127|ref|NP_616202.1| - 6.7e-72 241.1 0.1 1.1e-71 240.5 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|20090127|ref|NP_616202.1| - 1.2e-30 105.7 0.0 2.6e-30 104.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|20090127|ref|NP_616202.1| - 2.1e-30 105.7 0.0 4.7e-30 104.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|20090127|ref|NP_616202.1| - 2.9e-28 99.1 0.0 5.1e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Fer4_17 PF13534.6 gi|20090127|ref|NP_616202.1| - 2.5 8.7 11.4 0.27 11.8 0.4 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20090127|ref|NP_616202.1| - 4.5 7.5 9.8 0.17 12.0 0.2 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain RNA_pol_Rpb2_6 PF00562.28 gi|20090128|ref|NP_616203.1| - 7e-125 417.1 0.0 9.1e-125 416.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|20090128|ref|NP_616203.1| - 2.1e-28 98.5 0.2 6.1e-28 97.1 0.1 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|20090128|ref|NP_616203.1| - 2.7e-23 82.0 0.2 5.5e-23 81.0 0.2 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|20090128|ref|NP_616203.1| - 4.9e-13 49.4 1.6 1.4e-12 47.9 1.6 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 YflT PF11181.8 gi|20090128|ref|NP_616203.1| - 0.035 14.6 0.1 0.38 11.3 0.0 2.4 2 0 0 2 2 2 0 Heat induced stress protein YflT DUF1451 PF07295.11 gi|20090128|ref|NP_616203.1| - 0.045 13.8 0.4 0.092 12.8 0.4 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain Nudix_N_2 PF14803.6 gi|20090128|ref|NP_616203.1| - 0.05 13.5 0.5 12 5.9 0.0 2.6 2 0 0 2 2 2 0 Nudix N-terminal RNA_pol_Rpb2_45 PF10385.9 gi|20090128|ref|NP_616203.1| - 0.083 13.2 0.4 0.28 11.5 0.1 2.0 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain zinc_ribbon_2 PF13240.6 gi|20090128|ref|NP_616203.1| - 0.17 11.7 1.3 3.7 7.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb2_1 PF04563.15 gi|20090129|ref|NP_616204.1| - 5.8e-53 179.4 0.2 7.8e-53 179.0 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|20090129|ref|NP_616204.1| - 7.2e-30 104.0 0.2 1.3e-29 103.2 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|20090129|ref|NP_616204.1| - 2.2e-25 88.6 0.0 3.6e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|20090130|ref|NP_616205.1| - 1.2e-28 98.8 0.2 1.3e-28 98.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain HisKA_2 PF07568.12 gi|20090131|ref|NP_616206.1| - 1.3e-33 114.9 0.6 1.3e-33 114.9 0.6 2.9 3 0 0 3 3 3 1 Histidine kinase PAS_3 PF08447.12 gi|20090131|ref|NP_616206.1| - 2.6e-28 98.1 0.0 6.6e-18 64.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|20090131|ref|NP_616206.1| - 1.1e-23 83.4 0.2 1.4e-15 57.4 0.0 3.6 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.24 gi|20090131|ref|NP_616206.1| - 3.2e-20 72.4 0.1 1.2e-19 70.5 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|20090131|ref|NP_616206.1| - 1.9e-16 60.0 0.1 1.9e-11 44.0 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|20090131|ref|NP_616206.1| - 3.8e-14 52.9 0.0 2.2e-11 44.0 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|20090131|ref|NP_616206.1| - 1.2e-06 28.4 0.0 7.8e-06 25.8 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|20090131|ref|NP_616206.1| - 1.6e-06 28.6 0.2 1.8e-05 25.2 0.2 2.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|20090131|ref|NP_616206.1| - 0.0002 22.0 0.1 0.00063 20.4 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20090131|ref|NP_616206.1| - 0.00038 20.4 0.0 0.00082 19.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SHE3 PF17078.5 gi|20090131|ref|NP_616206.1| - 0.012 15.3 3.3 0.03 14.0 3.3 1.6 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF2075 PF09848.9 gi|20090131|ref|NP_616206.1| - 0.015 14.5 0.9 0.015 14.5 0.9 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) SPOB_a PF14689.6 gi|20090131|ref|NP_616206.1| - 0.03 14.0 0.3 0.17 11.6 0.0 2.4 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Gp-FAR-1 PF05823.12 gi|20090131|ref|NP_616206.1| - 0.12 12.8 2.9 0.21 11.9 0.3 2.5 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) TMF_TATA_bd PF12325.8 gi|20090131|ref|NP_616206.1| - 6.6 7.0 12.5 0.076 13.2 2.6 2.8 4 0 0 4 4 3 0 TATA element modulatory factor 1 TATA binding Response_reg PF00072.24 gi|20090132|ref|NP_616207.1| - 3.7e-20 72.2 0.3 4.3e-20 71.9 0.3 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|20090133|ref|NP_616208.1| - 6.1e-20 71.5 0.1 7.2e-20 71.2 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Epimerase_2 PF02350.19 gi|20090133|ref|NP_616208.1| - 0.088 11.6 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase PAS_4 PF08448.10 gi|20090134|ref|NP_616209.1| - 1.2e-80 266.9 0.0 4e-15 56.0 0.0 6.7 7 0 0 7 7 6 5 PAS fold PAS_9 PF13426.7 gi|20090134|ref|NP_616209.1| - 2.9e-73 242.8 1.6 2.9e-16 59.6 0.0 7.1 7 0 0 7 7 6 6 PAS domain PAS PF00989.25 gi|20090134|ref|NP_616209.1| - 1.8e-59 198.7 0.0 3.7e-12 46.2 0.0 7.0 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.12 gi|20090134|ref|NP_616209.1| - 7.9e-55 183.1 0.6 1.8e-23 82.6 0.1 7.0 6 0 0 6 6 6 6 PAS fold MEDS PF14417.6 gi|20090134|ref|NP_616209.1| - 3.3e-51 173.3 0.0 1.3e-50 171.4 0.0 2.1 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_8 PF13188.7 gi|20090134|ref|NP_616209.1| - 1.2e-37 127.4 0.0 1.6e-06 28.0 0.0 6.1 6 0 0 6 6 5 5 PAS domain HATPase_c PF02518.26 gi|20090134|ref|NP_616209.1| - 2e-30 105.6 0.0 5.7e-30 104.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|20090134|ref|NP_616209.1| - 3.2e-13 50.2 0.0 1.3e-12 48.2 0.0 2.2 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|20090134|ref|NP_616209.1| - 5.6e-13 49.7 0.0 2.4e-12 47.6 0.0 2.2 2 0 0 2 2 1 1 GAF domain HisKA PF00512.25 gi|20090134|ref|NP_616209.1| - 6.1e-11 42.2 0.1 6.1e-11 42.2 0.1 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|20090134|ref|NP_616209.1| - 1.5e-08 35.0 0.0 1.2e-07 32.1 0.0 2.6 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.6 gi|20090134|ref|NP_616209.1| - 5.9e-06 26.1 0.0 1.4e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|20090134|ref|NP_616209.1| - 0.00033 21.2 0.0 26 5.5 0.0 4.9 5 0 0 5 5 5 0 PAS domain sCache_3_3 PF17202.4 gi|20090134|ref|NP_616209.1| - 0.0012 19.2 0.0 12 6.4 0.0 4.4 4 0 0 4 4 4 0 Single cache domain 3 HATPase_c_3 PF13589.6 gi|20090134|ref|NP_616209.1| - 0.0035 17.2 0.0 0.0093 15.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VRR_NUC PF08774.11 gi|20090134|ref|NP_616209.1| - 0.018 15.1 0.3 4.4 7.4 0.0 3.0 3 0 0 3 3 2 0 VRR-NUC domain PAS_6 PF08348.11 gi|20090134|ref|NP_616209.1| - 0.052 13.4 0.0 26 4.7 0.0 4.1 4 0 0 4 4 4 0 YheO-like PAS domain HALZ PF02183.18 gi|20090134|ref|NP_616209.1| - 0.057 13.6 11.5 0.59 10.4 1.5 3.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper UPF0058 PF01893.16 gi|20090134|ref|NP_616209.1| - 0.18 12.1 3.1 9.4 6.6 0.5 2.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0058 Rootletin PF15035.6 gi|20090134|ref|NP_616209.1| - 0.68 9.9 16.7 0.051 13.6 2.6 2.9 3 0 0 3 3 2 0 Ciliary rootlet component, centrosome cohesion HGAL PF15666.5 gi|20090134|ref|NP_616209.1| - 0.75 9.9 5.6 1.9 8.6 0.3 3.2 3 0 0 3 3 3 0 Germinal center-associated lymphoma DUF3540 PF12059.8 gi|20090134|ref|NP_616209.1| - 1 9.1 4.5 10 5.9 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3540) Synaptobrevin PF00957.21 gi|20090134|ref|NP_616209.1| - 1.1 9.1 7.4 6.3 6.7 0.8 2.9 2 0 0 2 2 2 0 Synaptobrevin MnmE_helical PF12631.7 gi|20090134|ref|NP_616209.1| - 1.4 9.0 11.2 0.18 11.9 0.8 4.1 3 2 0 3 3 3 0 MnmE helical domain Defensin_propep PF00879.18 gi|20090134|ref|NP_616209.1| - 1.7 9.0 9.2 3.6 7.9 3.2 2.9 2 0 0 2 2 2 0 Defensin propeptide MecA_N PF05223.11 gi|20090134|ref|NP_616209.1| - 2 8.7 5.1 7.6 6.8 0.5 2.7 2 0 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain EMP24_GP25L PF01105.24 gi|20090134|ref|NP_616209.1| - 2.6 7.9 11.9 0.66 9.9 1.0 3.7 3 0 0 3 3 3 0 emp24/gp25L/p24 family/GOLD Sec34 PF04136.15 gi|20090134|ref|NP_616209.1| - 3.5 7.5 18.4 0.41 10.5 3.7 3.8 4 0 0 4 4 4 0 Sec34-like family Sec20 PF03908.13 gi|20090134|ref|NP_616209.1| - 5.3 7.0 8.5 10 6.1 1.3 3.2 3 0 0 3 3 2 0 Sec20 SBP_bac_6 PF13343.6 gi|20090135|ref|NP_616210.1| - 2e-50 171.5 0.0 2.7e-50 171.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1858 PF08984.11 gi|20090135|ref|NP_616210.1| - 1e-11 44.8 0.0 2e-10 40.7 0.1 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF1858) cobW PF02492.19 gi|20090136|ref|NP_616211.1| - 2e-13 50.3 0.0 3e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|20090136|ref|NP_616211.1| - 4.7e-05 22.5 0.2 0.052 12.5 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|20090136|ref|NP_616211.1| - 7.2e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|20090136|ref|NP_616211.1| - 0.0039 17.6 0.0 0.0055 17.1 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|20090136|ref|NP_616211.1| - 0.0062 16.5 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 NTPase KTI12 PF08433.10 gi|20090136|ref|NP_616211.1| - 0.0063 16.0 0.0 0.0088 15.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|20090136|ref|NP_616211.1| - 0.017 15.0 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 ATP_bind_1 PF03029.17 gi|20090136|ref|NP_616211.1| - 0.022 14.6 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|20090136|ref|NP_616211.1| - 0.068 12.8 0.0 0.17 11.5 0.0 1.8 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain RecA PF00154.21 gi|20090136|ref|NP_616211.1| - 0.091 12.2 0.0 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_19 PF13245.6 gi|20090136|ref|NP_616211.1| - 0.12 12.7 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|20090136|ref|NP_616211.1| - 0.14 12.0 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|20090136|ref|NP_616211.1| - 0.15 11.8 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|20090136|ref|NP_616211.1| - 0.17 11.1 0.0 0.55 9.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin ABC_tran PF00005.27 gi|20090137|ref|NP_616212.1| - 1.2e-15 58.2 0.0 2.2e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090137|ref|NP_616212.1| - 1.4e-11 44.8 0.3 4e-05 23.6 0.1 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|20090137|ref|NP_616212.1| - 2.4e-05 24.1 0.3 0.00017 21.4 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20090137|ref|NP_616212.1| - 0.00017 22.1 0.0 0.00029 21.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20090137|ref|NP_616212.1| - 0.00024 21.4 0.3 0.004 17.4 0.2 2.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|20090137|ref|NP_616212.1| - 0.00035 20.1 0.3 0.024 14.1 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20090137|ref|NP_616212.1| - 0.0031 18.0 2.8 0.18 12.3 2.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090137|ref|NP_616212.1| - 0.0039 16.9 0.0 0.0083 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|20090137|ref|NP_616212.1| - 0.0064 16.5 0.0 4.4 7.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|20090137|ref|NP_616212.1| - 0.0088 16.0 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|20090137|ref|NP_616212.1| - 0.019 14.7 0.2 0.42 10.2 0.0 2.6 2 1 1 3 3 3 0 AAA ATPase domain FlgN PF05130.12 gi|20090137|ref|NP_616212.1| - 0.028 14.9 0.5 0.14 12.7 0.3 2.2 2 0 0 2 2 2 0 FlgN protein NACHT PF05729.12 gi|20090137|ref|NP_616212.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|20090137|ref|NP_616212.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.16 gi|20090137|ref|NP_616212.1| - 0.068 12.6 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.6 gi|20090137|ref|NP_616212.1| - 0.071 13.4 0.9 0.7 10.2 0.9 2.3 1 1 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|20090137|ref|NP_616212.1| - 0.074 11.9 0.0 0.16 10.8 0.0 1.5 2 0 0 2 2 2 0 PrkA AAA domain AAA_25 PF13481.6 gi|20090137|ref|NP_616212.1| - 0.089 12.4 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain PAS_3 PF08447.12 gi|20090138|ref|NP_616213.1| - 9.8e-76 250.1 0.1 3.5e-23 81.7 0.1 7.9 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.7 gi|20090138|ref|NP_616213.1| - 5.6e-53 177.6 0.8 1.2e-15 57.6 0.0 7.6 7 0 0 7 7 7 7 PAS domain PAS PF00989.25 gi|20090138|ref|NP_616213.1| - 1.5e-48 163.5 0.5 4.5e-16 58.8 0.0 7.9 7 1 0 7 7 7 7 PAS fold PAS_4 PF08448.10 gi|20090138|ref|NP_616213.1| - 5.7e-47 158.5 0.0 1.9e-14 53.8 0.0 7.3 7 0 0 7 7 7 5 PAS fold MEDS PF14417.6 gi|20090138|ref|NP_616213.1| - 2.2e-45 154.4 0.1 1e-44 152.2 0.0 2.3 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.12 gi|20090138|ref|NP_616213.1| - 6.1e-29 99.9 2.3 6.1e-29 99.9 2.3 2.6 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.7 gi|20090138|ref|NP_616213.1| - 9.1e-26 89.4 0.0 9.5e-10 38.3 0.0 5.7 6 0 0 6 6 6 3 PAS domain PAS_7 PF12860.7 gi|20090138|ref|NP_616213.1| - 4.1e-07 30.2 5.6 0.1 12.7 0.0 7.3 8 1 0 8 8 8 1 PAS fold HATPase_c PF02518.26 gi|20090138|ref|NP_616213.1| - 1.2e-05 25.8 0.2 5.3e-05 23.7 0.2 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|20090138|ref|NP_616213.1| - 1.3e-05 25.7 0.0 0.087 13.4 0.0 4.5 4 0 0 4 4 4 1 PAS domain PAS_11 PF14598.6 gi|20090138|ref|NP_616213.1| - 0.0001 22.4 0.0 0.086 13.0 0.0 3.8 3 0 0 3 3 3 1 PAS domain HWE_HK PF07536.14 gi|20090138|ref|NP_616213.1| - 0.011 16.4 1.5 0.059 14.1 0.1 2.7 2 0 0 2 2 2 0 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20090138|ref|NP_616213.1| - 0.03 14.3 0.0 0.12 12.3 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF1835 PF08874.10 gi|20090138|ref|NP_616213.1| - 0.095 12.9 1.0 0.33 11.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1835) AdoHcyase PF05221.17 gi|20090139|ref|NP_616214.1| - 1.6e-55 188.4 0.0 8.1e-28 97.4 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|20090139|ref|NP_616214.1| - 1.4e-51 174.8 0.8 2.7e-51 173.9 0.8 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|20090139|ref|NP_616214.1| - 9.8e-09 34.8 0.1 1.7e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|20090139|ref|NP_616214.1| - 0.0002 21.0 0.0 0.00036 20.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TSCPD PF12637.7 gi|20090139|ref|NP_616214.1| - 0.15 12.3 0.5 15 6.0 0.1 2.8 3 0 0 3 3 3 0 TSCPD domain Amidohydro_1 PF01979.20 gi|20090140|ref|NP_616215.1| - 2.4e-78 263.8 1.1 3e-78 263.6 1.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|20090140|ref|NP_616215.1| - 2.1e-24 86.8 2.5 3.3e-18 66.4 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family A_deaminase PF00962.22 gi|20090140|ref|NP_616215.1| - 0.019 14.3 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase HD PF01966.22 gi|20090141|ref|NP_616216.1| - 2.9e-15 56.5 0.6 5.4e-15 55.7 0.6 1.4 1 0 0 1 1 1 1 HD domain PPS_PS PF02006.16 gi|20090142|ref|NP_616217.1| - 1e-75 253.1 2.6 1.3e-75 252.8 2.6 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF3837 PF12939.7 gi|20090142|ref|NP_616217.1| - 0.041 14.3 0.1 0.074 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) DUF1836 PF08876.11 gi|20090142|ref|NP_616217.1| - 0.061 13.4 0.3 0.095 12.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1836) TPP_enzyme_M PF00205.22 gi|20090142|ref|NP_616217.1| - 0.11 12.2 0.4 0.49 10.1 0.3 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain GHMP_kinases_N PF00288.26 gi|20090143|ref|NP_616218.1| - 3e-08 33.8 1.8 3e-08 33.8 1.8 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|20090143|ref|NP_616218.1| - 0.00018 21.8 0.1 0.0023 18.3 0.0 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal DFP PF04127.15 gi|20090144|ref|NP_616219.1| - 2e-48 164.7 0.2 5.7e-47 160.0 0.0 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|20090144|ref|NP_616219.1| - 8.5e-37 126.3 0.2 1.3e-36 125.8 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.6 gi|20090144|ref|NP_616219.1| - 0.0041 17.0 0.9 0.0069 16.3 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding Usp PF00582.26 gi|20090144|ref|NP_616219.1| - 0.006 17.1 1.1 1.3 9.5 0.2 2.6 2 0 0 2 2 2 2 Universal stress protein family Glyco_transf_4 PF13439.6 gi|20090144|ref|NP_616219.1| - 0.036 14.1 0.0 0.45 10.5 0.0 2.3 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|20090144|ref|NP_616219.1| - 0.068 13.6 0.8 0.25 11.8 0.8 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain acVLRF1 PF18859.1 gi|20090145|ref|NP_616220.1| - 3.3e-17 63.0 0.1 8.1e-17 61.7 0.0 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|20090145|ref|NP_616220.1| - 3.6e-12 46.7 0.0 7.4e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|20090145|ref|NP_616220.1| - 1.5e-10 41.5 0.1 3.4e-10 40.4 0.1 1.6 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family2 PF18844.1 gi|20090145|ref|NP_616220.1| - 6.1e-05 23.1 3.7 0.00019 21.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 Cep57_CLD_2 PF14197.6 gi|20090145|ref|NP_616220.1| - 0.11 12.6 9.0 0.41 10.8 9.0 1.9 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 ABC_tran_CTD PF16326.5 gi|20090145|ref|NP_616220.1| - 0.12 12.7 7.3 0.62 10.4 7.3 2.3 1 1 0 1 1 1 0 ABC transporter C-terminal domain zf-ZPR1 PF03367.13 gi|20090145|ref|NP_616220.1| - 0.48 10.3 2.2 17 5.2 0.5 2.2 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Pup PF05639.11 gi|20090145|ref|NP_616220.1| - 0.79 10.7 0.0 0.79 10.7 0.0 2.5 3 0 0 3 3 3 0 Pup-like protein HR1 PF02185.16 gi|20090145|ref|NP_616220.1| - 8.7 6.5 12.4 23 5.2 1.1 2.7 1 1 1 2 2 2 0 Hr1 repeat DUF1275 PF06912.11 gi|20090146|ref|NP_616221.1| - 1.5e-50 171.8 13.3 1.7e-50 171.6 13.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) RseC_MucC PF04246.12 gi|20090146|ref|NP_616221.1| - 0.003 17.5 8.6 0.0039 17.1 2.4 2.3 2 0 0 2 2 2 1 Positive regulator of sigma(E), RseC/MucC DUF3397 PF11877.8 gi|20090146|ref|NP_616221.1| - 0.14 12.4 8.3 2.2 8.5 3.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3397) Peptidase_U4 PF03419.13 gi|20090146|ref|NP_616221.1| - 0.35 10.1 8.4 0.2 10.9 6.4 1.6 1 1 0 1 1 1 0 Sporulation factor SpoIIGA NosD PF05048.13 gi|20090150|ref|NP_616225.1| - 4.2e-40 137.5 93.0 2.3e-17 63.1 32.4 3.2 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20090150|ref|NP_616225.1| - 1.4e-34 119.2 92.6 3.1e-22 79.1 39.8 3.5 2 1 2 4 4 4 3 Right handed beta helix region Conotoxin PF02950.17 gi|20090150|ref|NP_616225.1| - 1.5 9.9 4.0 4.1 8.5 0.0 2.5 2 0 0 2 2 2 0 Conotoxin Chordopox_G3 PF06129.12 gi|20090150|ref|NP_616225.1| - 8.5 7.1 17.2 3.5 8.4 1.3 4.5 3 1 2 5 5 5 0 Chordopoxvirus G3 protein FtsJ PF01728.19 gi|20090152|ref|NP_616227.1| - 2.4e-58 197.1 0.0 3.5e-58 196.6 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|20090152|ref|NP_616227.1| - 2.9e-08 33.6 1.5 5.4e-08 32.7 1.5 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|20090152|ref|NP_616227.1| - 7.9e-05 22.6 0.0 0.00039 20.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090152|ref|NP_616227.1| - 0.001 18.9 0.0 0.027 14.3 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090152|ref|NP_616227.1| - 0.041 14.6 0.1 0.55 11.0 0.1 2.5 1 1 1 2 2 2 0 Methyltransferase domain PHP PF02811.19 gi|20090153|ref|NP_616228.1| - 1.1e-09 38.8 0.0 1.7e-09 38.2 0.0 1.5 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|20090153|ref|NP_616228.1| - 0.015 14.8 0.0 0.029 13.8 0.0 1.5 1 1 0 1 1 1 0 RNase P subunit p30 ATPgrasp_N PF18130.1 gi|20090153|ref|NP_616228.1| - 0.016 15.7 0.6 0.16 12.5 0.1 2.5 3 0 0 3 3 3 0 ATP-grasp N-terminal domain DUF4799 PF16056.5 gi|20090153|ref|NP_616228.1| - 0.051 12.7 0.0 0.055 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4799) Mur_ligase PF01225.25 gi|20090153|ref|NP_616228.1| - 0.1 13.0 0.3 2.9 8.3 0.1 2.3 2 0 0 2 2 2 0 Mur ligase family, catalytic domain RBFA PF02033.18 gi|20090154|ref|NP_616229.1| - 0.034 14.6 0.1 0.16 12.5 0.1 2.2 2 0 0 2 2 2 0 Ribosome-binding factor A PHP PF02811.19 gi|20090155|ref|NP_616230.1| - 2e-08 34.7 0.0 2.9e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|20090155|ref|NP_616230.1| - 0.00023 20.7 0.0 0.00058 19.4 0.0 1.6 2 0 0 2 2 2 1 RNase P subunit p30 PKD PF00801.20 gi|20090156|ref|NP_616231.1| - 1.1e-46 156.5 31.3 9.9e-15 54.2 0.9 5.1 5 0 0 5 5 5 4 PKD domain NosD PF05048.13 gi|20090156|ref|NP_616231.1| - 8.2e-41 139.8 31.5 8.2e-41 139.8 31.5 2.1 2 1 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PGF-CTERM PF18204.1 gi|20090156|ref|NP_616231.1| - 3e-06 27.0 0.4 3e-06 27.0 0.4 1.7 2 0 0 2 2 2 1 PGF-CTERM motif PKD_3 PF16820.5 gi|20090156|ref|NP_616231.1| - 8.9e-05 22.2 1.4 5.2 6.9 0.0 4.5 4 0 0 4 4 4 2 PKD-like domain Pectinesterase PF01095.19 gi|20090156|ref|NP_616231.1| - 0.00088 18.1 0.1 0.0021 16.9 0.1 1.6 1 0 0 1 1 1 1 Pectinesterase Y_Y_Y PF07495.13 gi|20090156|ref|NP_616231.1| - 0.051 13.5 4.4 13 5.8 0.1 4.0 3 0 0 3 3 3 0 Y_Y_Y domain DUF4625 PF15418.6 gi|20090156|ref|NP_616231.1| - 0.086 13.1 2.0 16 5.7 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) PKD PF00801.20 gi|20090157|ref|NP_616232.1| - 1.4e-45 153.0 31.3 2.4e-13 49.7 2.1 5.5 5 0 0 5 5 5 4 PKD domain DPPIV_N PF00930.21 gi|20090157|ref|NP_616232.1| - 1.3e-08 34.1 10.2 0.0037 16.1 0.1 5.6 3 1 2 5 5 5 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region PKD_3 PF16820.5 gi|20090157|ref|NP_616232.1| - 0.0024 17.6 3.2 2.9 7.7 0.0 4.4 4 0 0 4 4 4 2 PKD-like domain DUF4625 PF15418.6 gi|20090157|ref|NP_616232.1| - 0.045 14.0 1.2 5 7.4 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) PSI_PsaH PF03244.14 gi|20090157|ref|NP_616232.1| - 3.3 7.2 5.8 1.4 8.4 0.1 3.1 2 1 2 4 4 4 0 Photosystem I reaction centre subunit VI Polbeta PF18765.1 gi|20090159|ref|NP_616234.1| - 1e-15 57.5 0.3 1.2e-15 57.3 0.3 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20090159|ref|NP_616234.1| - 7.2e-15 55.1 0.9 8.6e-15 54.8 0.9 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|20090159|ref|NP_616234.1| - 0.0073 16.5 0.0 0.0078 16.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm PAC2 PF09754.9 gi|20090159|ref|NP_616234.1| - 0.074 13.0 0.0 0.08 12.9 0.0 1.1 1 0 0 1 1 1 0 PAC2 family DUF86 PF01934.17 gi|20090160|ref|NP_616235.1| - 3e-28 98.1 0.3 3.5e-28 97.9 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2117 PF09890.9 gi|20090161|ref|NP_616236.1| - 2.9e-14 53.1 0.0 3.2e-14 52.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) T2SSE PF00437.20 gi|20090163|ref|NP_616238.1| - 1.2e-30 106.5 0.0 1.9e-30 105.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|20090163|ref|NP_616238.1| - 0.00023 20.7 0.0 0.00051 19.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region DEAD PF00270.29 gi|20090163|ref|NP_616238.1| - 0.006 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|20090163|ref|NP_616238.1| - 0.014 15.7 0.1 0.067 13.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|20090163|ref|NP_616238.1| - 0.03 14.6 0.0 0.23 11.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|20090163|ref|NP_616238.1| - 0.4 11.2 0.1 0.4 11.2 0.1 2.6 3 0 0 3 3 3 0 ABC transporter ALMT PF11744.8 gi|20090163|ref|NP_616238.1| - 0.81 8.4 7.2 1.6 7.5 7.2 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter CobT PF06213.12 gi|20090163|ref|NP_616238.1| - 1.4 8.2 15.0 2.5 7.4 15.0 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DDHD PF02862.17 gi|20090163|ref|NP_616238.1| - 2.7 8.1 10.6 0.029 14.5 2.5 1.8 2 0 0 2 2 2 0 DDHD domain Membralin PF09746.9 gi|20090163|ref|NP_616238.1| - 3 6.8 5.8 4.9 6.1 5.8 1.2 1 0 0 1 1 1 0 Tumour-associated protein Eapp_C PF10238.9 gi|20090163|ref|NP_616238.1| - 4.4 7.4 12.3 9.9 6.2 9.5 2.5 2 0 0 2 2 2 0 E2F-associated phosphoprotein NPR3 PF03666.13 gi|20090163|ref|NP_616238.1| - 6.1 5.5 16.1 13 4.5 16.1 1.4 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 DUF913 PF06025.12 gi|20090163|ref|NP_616238.1| - 6.9 5.5 7.3 12 4.8 7.3 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) zf-C3HC4_2 PF13923.6 gi|20090165|ref|NP_616240.1| - 0.42 10.5 6.3 2.3 8.1 1.2 2.9 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Radical_SAM PF04055.21 gi|20090166|ref|NP_616241.1| - 5.5e-20 72.4 0.0 1e-19 71.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|20090166|ref|NP_616241.1| - 7e-09 36.1 0.6 2.5e-08 34.3 0.6 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|20090166|ref|NP_616241.1| - 4.2e-08 33.6 0.4 1.2e-07 32.0 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20090166|ref|NP_616241.1| - 1.8e-05 24.8 0.2 8.8e-05 22.6 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain YfkB PF08756.10 gi|20090166|ref|NP_616241.1| - 0.033 14.0 0.1 0.072 12.9 0.1 1.5 1 0 0 1 1 1 0 YfkB-like domain DUF3659 PF12396.8 gi|20090167|ref|NP_616242.1| - 0.021 14.7 0.8 0.04 13.9 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) DUF2971 PF11185.8 gi|20090168|ref|NP_616243.1| - 1.5e-05 26.0 1.8 7.3e-05 23.9 1.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2971) SLT_beta PF02258.16 gi|20090168|ref|NP_616243.1| - 0.00032 20.7 0.2 0.02 14.9 0.0 2.2 2 0 0 2 2 2 2 Shiga-like toxin beta subunit Polbeta PF18765.1 gi|20090169|ref|NP_616244.1| - 4e-14 52.5 0.5 4.5e-14 52.3 0.5 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20090169|ref|NP_616244.1| - 5.5e-12 45.8 0.6 6.4e-12 45.6 0.6 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2117 PF09890.9 gi|20090170|ref|NP_616245.1| - 8.1e-76 254.2 0.0 1e-75 253.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|20090170|ref|NP_616245.1| - 0.006 15.8 0.1 0.01 15.1 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase AAA_19 PF13245.6 gi|20090170|ref|NP_616245.1| - 0.018 15.4 0.0 22 5.4 0.0 3.3 4 0 0 4 4 4 0 AAA domain Peptidase_M23 PF01551.22 gi|20090170|ref|NP_616245.1| - 0.16 12.2 0.1 11 6.3 0.0 2.9 3 0 0 3 3 3 0 Peptidase family M23 Lactamase_B_3 PF13483.6 gi|20090171|ref|NP_616246.1| - 6.4e-27 94.4 0.0 9.9e-27 93.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|20090171|ref|NP_616246.1| - 1.2e-21 77.1 0.0 1.7e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20090171|ref|NP_616246.1| - 5.6e-08 33.0 0.9 5.6e-08 33.0 0.9 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Prismane PF03063.20 gi|20090172|ref|NP_616247.1| - 7.5e-126 420.8 0.0 8.7e-126 420.6 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Lar_N PF09861.9 gi|20090174|ref|NP_616249.1| - 2.7e-68 229.2 0.0 4.4e-68 228.5 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|20090174|ref|NP_616249.1| - 7.8e-05 23.0 0.0 0.00012 22.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|20090175|ref|NP_616250.1| - 2.3e-72 242.5 0.3 4e-72 241.7 0.0 1.6 2 0 0 2 2 2 1 Lactate racemase N-terminal domain DDE_Tnp_IS1 PF03400.13 gi|20090176|ref|NP_616251.1| - 6.1e-14 52.5 0.2 7.1e-14 52.3 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20090177|ref|NP_616252.1| - 2.3e-06 27.2 0.0 4.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20090177|ref|NP_616252.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20090177|ref|NP_616252.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20090177|ref|NP_616252.1| - 0.0019 17.9 0.4 0.0069 16.1 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20090177|ref|NP_616252.1| - 0.0064 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20090177|ref|NP_616252.1| - 0.007 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20090177|ref|NP_616252.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|20090177|ref|NP_616252.1| - 0.018 14.1 0.1 0.034 13.2 0.2 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20090177|ref|NP_616252.1| - 0.042 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20090177|ref|NP_616252.1| - 0.056 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20090177|ref|NP_616252.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20090177|ref|NP_616252.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20090177|ref|NP_616252.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin SSF PF00474.17 gi|20090178|ref|NP_616253.1| - 3.4e-59 200.7 43.7 5.2e-59 200.1 43.7 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family YoqO PF14037.6 gi|20090178|ref|NP_616253.1| - 0.056 14.0 0.5 0.056 14.0 0.5 3.5 5 1 0 5 5 5 0 YoqO-like protein Asparaginase PF00710.20 gi|20090179|ref|NP_616254.1| - 6.6e-59 198.7 1.9 1.4e-58 197.6 1.3 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|20090179|ref|NP_616254.1| - 6.5e-31 106.9 0.1 2.2e-29 102.0 0.0 2.4 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|20090179|ref|NP_616254.1| - 2.2e-17 62.1 0.1 4.3e-17 61.2 0.1 1.5 1 0 0 1 1 1 1 GatD N-terminal domain Lyase_1 PF00206.20 gi|20090180|ref|NP_616255.1| - 1.6e-62 211.7 0.0 2.7e-62 211.0 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|20090180|ref|NP_616255.1| - 3e-14 53.5 0.1 1.3e-13 51.5 0.0 2.3 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Methyltransf_11 PF08241.12 gi|20090181|ref|NP_616256.1| - 5.2e-25 87.9 0.0 7.1e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090181|ref|NP_616256.1| - 6.3e-23 81.3 0.0 9e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090181|ref|NP_616256.1| - 2.9e-22 79.2 0.0 4e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20090181|ref|NP_616256.1| - 2.5e-21 76.2 0.0 3.1e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090181|ref|NP_616256.1| - 2.5e-20 72.8 0.0 2.9e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090181|ref|NP_616256.1| - 4.1e-17 62.7 0.0 6e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|20090181|ref|NP_616256.1| - 5.8e-07 29.3 0.0 8.7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|20090181|ref|NP_616256.1| - 1.2e-05 25.0 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|20090181|ref|NP_616256.1| - 1.5e-05 24.5 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|20090181|ref|NP_616256.1| - 3.9e-05 22.7 0.0 5.3e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.17 gi|20090181|ref|NP_616256.1| - 0.0035 16.8 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_8 PF05148.15 gi|20090181|ref|NP_616256.1| - 0.061 13.2 0.1 0.081 12.8 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase DREV PF05219.12 gi|20090181|ref|NP_616256.1| - 0.073 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase PCMT PF01135.19 gi|20090181|ref|NP_616256.1| - 0.077 12.7 0.1 0.28 10.9 0.1 1.7 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NNMT_PNMT_TEMT PF01234.17 gi|20090181|ref|NP_616256.1| - 0.11 11.7 0.0 0.2 10.8 0.0 1.4 1 1 0 1 1 1 0 NNMT/PNMT/TEMT family adh_short PF00106.25 gi|20090182|ref|NP_616257.1| - 4.4e-41 140.5 0.1 6.2e-41 140.0 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|20090182|ref|NP_616257.1| - 1e-25 90.7 0.0 1.5e-25 90.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|20090182|ref|NP_616257.1| - 1.2e-07 31.8 0.0 1.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|20090182|ref|NP_616257.1| - 1.2e-05 24.9 0.0 1.4e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Polysacc_synt_2 PF02719.15 gi|20090182|ref|NP_616257.1| - 0.00077 18.7 0.0 0.00097 18.3 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|20090182|ref|NP_616257.1| - 0.043 13.7 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding PAS_9 PF13426.7 gi|20090183|ref|NP_616258.1| - 2.2e-65 217.4 3.7 4.1e-17 62.3 0.1 7.2 7 0 0 7 7 7 6 PAS domain PAS_4 PF08448.10 gi|20090183|ref|NP_616258.1| - 5.5e-54 181.1 0.0 6.9e-13 48.8 0.0 7.2 7 0 0 7 7 7 6 PAS fold PAS_3 PF08447.12 gi|20090183|ref|NP_616258.1| - 7.2e-51 170.4 0.0 8.1e-16 58.1 0.0 7.0 6 0 0 6 6 6 6 PAS fold PAS PF00989.25 gi|20090183|ref|NP_616258.1| - 7.8e-49 164.4 0.4 6e-18 64.9 0.0 7.2 7 0 0 7 7 6 6 PAS fold MEDS PF14417.6 gi|20090183|ref|NP_616258.1| - 3.5e-48 163.5 0.2 1.9e-47 161.1 0.0 2.4 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PocR PF10114.9 gi|20090183|ref|NP_616258.1| - 6.9e-47 159.2 1.2 1.1e-46 158.5 0.0 2.1 2 0 0 2 2 1 1 Sensory domain found in PocR PAS_8 PF13188.7 gi|20090183|ref|NP_616258.1| - 4.8e-32 109.4 0.0 3.3e-08 33.4 0.0 6.2 5 0 0 5 5 5 4 PAS domain HisKA_2 PF07568.12 gi|20090183|ref|NP_616258.1| - 6.8e-30 103.0 1.2 6.8e-30 103.0 1.2 4.4 4 0 0 4 4 4 1 Histidine kinase HATPase_c PF02518.26 gi|20090183|ref|NP_616258.1| - 5.3e-10 39.8 0.9 3.3e-09 37.2 0.5 2.5 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20090183|ref|NP_616258.1| - 1.8e-05 24.7 0.1 4.4e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|20090183|ref|NP_616258.1| - 3.3e-05 24.0 2.9 3.3 7.9 0.1 6.9 7 3 0 7 7 6 1 PAS fold PAS_10 PF13596.6 gi|20090183|ref|NP_616258.1| - 7.3e-05 23.3 0.0 0.78 10.4 0.0 4.7 4 0 0 4 4 4 1 PAS domain dCache_1 PF02743.18 gi|20090183|ref|NP_616258.1| - 0.001 18.9 2.5 0.031 14.0 0.0 3.4 3 1 0 3 3 3 1 Cache domain OmpH PF03938.14 gi|20090183|ref|NP_616258.1| - 0.019 15.3 6.5 0.12 12.8 3.1 3.3 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) HWE_HK PF07536.14 gi|20090183|ref|NP_616258.1| - 0.063 14.0 4.2 0.077 13.7 0.1 3.1 3 0 0 3 3 3 0 HWE histidine kinase SPOB_a PF14689.6 gi|20090183|ref|NP_616258.1| - 0.14 11.9 0.3 0.78 9.5 0.0 2.4 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Lge1 PF11488.8 gi|20090183|ref|NP_616258.1| - 4.8 7.4 8.2 24 5.2 0.2 3.7 3 0 0 3 3 3 0 Transcriptional regulatory protein LGE1 RRXRR PF14239.6 gi|20090184|ref|NP_616259.1| - 0.16 11.8 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 RRXRR protein Gate PF07670.14 gi|20090185|ref|NP_616260.1| - 3.1e-12 46.7 16.5 1.3e-06 28.7 4.3 3.0 2 1 1 3 3 3 2 Nucleoside recognition ABC1 PF03109.16 gi|20090186|ref|NP_616261.1| - 6.3e-27 94.1 0.3 1.5e-26 92.9 0.0 1.8 2 0 0 2 2 2 1 ABC1 family Pkinase PF00069.25 gi|20090186|ref|NP_616261.1| - 2.5e-05 23.8 0.0 0.00089 18.7 0.1 2.3 2 0 0 2 2 2 1 Protein kinase domain WaaY PF06176.11 gi|20090186|ref|NP_616261.1| - 0.00092 18.9 1.5 0.0011 18.6 0.3 1.7 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) APH PF01636.23 gi|20090186|ref|NP_616261.1| - 0.0031 17.5 0.3 0.022 14.7 0.8 2.1 2 0 0 2 2 2 1 Phosphotransferase enzyme family DUF4752 PF15944.5 gi|20090186|ref|NP_616261.1| - 0.019 15.0 1.4 0.047 13.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4752) HMA PF00403.26 gi|20090187|ref|NP_616262.1| - 8.1e-17 61.4 1.3 9.5e-17 61.2 1.3 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain SHOCT PF09851.9 gi|20090188|ref|NP_616263.1| - 9.3e-12 44.3 3.9 1.2e-11 43.9 3.9 1.2 1 0 0 1 1 1 1 Short C-terminal domain RIC3 PF15361.6 gi|20090188|ref|NP_616263.1| - 0.015 15.7 0.0 0.017 15.5 0.0 1.1 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 FAM209 PF15206.6 gi|20090188|ref|NP_616263.1| - 0.073 12.9 0.0 0.082 12.7 0.0 1.1 1 0 0 1 1 1 0 FAM209 family DUF3742 PF12553.8 gi|20090188|ref|NP_616263.1| - 0.08 13.1 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) VbhA PF18495.1 gi|20090188|ref|NP_616263.1| - 0.084 12.8 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Antitoxin VbhA DUF1707 PF08044.11 gi|20090188|ref|NP_616263.1| - 0.19 11.8 0.1 0.23 11.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) AA_permease_2 PF13520.6 gi|20090189|ref|NP_616264.1| - 2.6e-34 118.8 50.6 3.7e-34 118.3 50.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|20090189|ref|NP_616264.1| - 7.4e-16 57.8 50.6 3.3e-15 55.7 50.6 1.9 1 1 0 1 1 1 1 Amino acid permease PHO4 PF01384.20 gi|20090190|ref|NP_616265.1| - 0.63 9.0 4.8 0.79 8.7 4.8 1.2 1 0 0 1 1 1 0 Phosphate transporter family Phageshock_PspG PF09583.10 gi|20090190|ref|NP_616265.1| - 1.2 9.5 10.6 0.27 11.5 1.7 2.1 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) Tetraspanin PF00335.20 gi|20090190|ref|NP_616265.1| - 2.3 7.9 6.0 2.6 7.7 6.0 1.1 1 0 0 1 1 1 0 Tetraspanin family Syndecan PF01034.20 gi|20090190|ref|NP_616265.1| - 9.1 6.3 8.4 1.7 8.6 0.8 2.1 2 0 0 2 2 2 0 Syndecan domain YHS PF04945.13 gi|20090191|ref|NP_616266.1| - 8.2e-10 38.6 0.1 1.1e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 YHS domain DUF3417 PF11897.8 gi|20090191|ref|NP_616266.1| - 0.011 16.2 0.0 0.012 16.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) TauE PF01925.19 gi|20090192|ref|NP_616267.1| - 3.1e-35 121.9 32.5 3.8e-35 121.6 32.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4079 PF13301.6 gi|20090193|ref|NP_616268.1| - 0.23 11.6 11.8 0.04 14.1 7.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4079) SieB PF14163.6 gi|20090193|ref|NP_616268.1| - 2.1 7.8 8.3 0.69 9.4 0.2 2.9 3 0 0 3 3 3 0 Super-infection exclusion protein B YbhQ PF11076.8 gi|20090193|ref|NP_616268.1| - 6.6 6.8 8.2 1.3 9.1 3.3 2.3 2 1 0 2 2 2 0 Putative inner membrane protein YbhQ TOH_N PF12549.8 gi|20090194|ref|NP_616269.1| - 0.21 11.5 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Tyrosine hydroxylase N terminal 2-Hacid_dh_C PF02826.19 gi|20090195|ref|NP_616270.1| - 1.9e-66 222.8 0.1 3.5e-66 222.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|20090195|ref|NP_616270.1| - 4.4e-28 97.6 0.1 5.1e-28 97.4 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|20090195|ref|NP_616270.1| - 0.00051 20.6 0.3 0.0041 17.7 0.0 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|20090195|ref|NP_616270.1| - 0.00074 19.7 0.2 0.0012 19.0 0.2 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|20090195|ref|NP_616270.1| - 0.013 15.6 0.1 0.2 11.7 0.1 2.4 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|20090195|ref|NP_616270.1| - 0.028 14.0 0.1 0.069 12.7 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|20090195|ref|NP_616270.1| - 0.06 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|20090195|ref|NP_616270.1| - 0.069 14.0 0.0 0.13 13.1 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Ferric_reduct PF01794.19 gi|20090196|ref|NP_616271.1| - 0.0036 17.4 4.9 0.0043 17.2 4.9 1.1 1 0 0 1 1 1 1 Ferric reductase like transmembrane component DUF4405 PF14358.6 gi|20090196|ref|NP_616271.1| - 0.0046 17.5 11.5 0.0057 17.2 11.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Sdh_cyt PF01127.22 gi|20090196|ref|NP_616271.1| - 0.72 9.9 12.6 1 9.4 2.2 2.0 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HMA PF00403.26 gi|20090197|ref|NP_616272.1| - 1.2e-05 25.6 1.5 1.6e-05 25.2 1.5 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain HMA PF00403.26 gi|20090198|ref|NP_616273.1| - 1.3e-20 73.5 3.6 1.5e-20 73.4 3.6 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.17 gi|20090198|ref|NP_616273.1| - 0.00013 21.7 0.1 0.00025 20.8 0.1 1.6 1 1 0 1 1 1 1 Sulfurtransferase TusA RRM_3 PF08777.11 gi|20090198|ref|NP_616273.1| - 0.018 15.1 0.3 0.024 14.7 0.3 1.1 1 0 0 1 1 1 0 RNA binding motif Beta_elim_lyase PF01212.21 gi|20090198|ref|NP_616273.1| - 0.022 14.1 0.0 0.022 14.0 0.0 1.0 1 0 0 1 1 1 0 Beta-eliminating lyase DUF2674 PF10879.8 gi|20090198|ref|NP_616273.1| - 0.028 14.0 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2674) Thioredoxin_3 PF13192.6 gi|20090198|ref|NP_616273.1| - 0.038 14.0 0.8 0.049 13.7 0.8 1.3 1 1 0 1 1 1 0 Thioredoxin domain UPF0270 PF06794.12 gi|20090198|ref|NP_616273.1| - 0.095 12.8 0.3 0.11 12.6 0.3 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0270) HMA PF00403.26 gi|20090199|ref|NP_616274.1| - 9.8e-09 35.5 0.2 1.1e-08 35.3 0.2 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain HxlR PF01638.17 gi|20090200|ref|NP_616275.1| - 1.2e-22 79.6 0.1 1.4e-22 79.4 0.1 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|20090200|ref|NP_616275.1| - 5.9e-05 22.9 0.0 0.0001 22.1 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|20090200|ref|NP_616275.1| - 0.00022 21.1 0.0 0.00031 20.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|20090200|ref|NP_616275.1| - 0.0012 18.7 0.1 0.0026 17.7 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|20090200|ref|NP_616275.1| - 0.0025 17.7 0.0 0.0045 16.8 0.0 1.4 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20090200|ref|NP_616275.1| - 0.0031 17.0 0.0 0.0053 16.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|20090200|ref|NP_616275.1| - 0.014 15.4 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|20090200|ref|NP_616275.1| - 0.016 15.4 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.19 gi|20090200|ref|NP_616275.1| - 0.04 14.1 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|20090200|ref|NP_616275.1| - 0.15 12.4 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|20090200|ref|NP_616275.1| - 0.15 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CbiA PF01656.23 gi|20090201|ref|NP_616276.1| - 4e-13 49.5 0.0 6.6e-13 48.8 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20090201|ref|NP_616276.1| - 1.9e-08 34.1 0.9 1.3e-07 31.4 0.7 2.4 1 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|20090201|ref|NP_616276.1| - 1.2e-07 31.8 0.2 2.2e-07 30.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|20090201|ref|NP_616276.1| - 2.7e-07 30.3 0.0 0.00013 21.5 0.1 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|20090201|ref|NP_616276.1| - 6.2e-06 26.2 0.0 9.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.15 gi|20090201|ref|NP_616276.1| - 1.3e-05 24.6 0.4 2.2e-05 23.8 0.4 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|20090201|ref|NP_616276.1| - 3e-05 23.6 0.4 0.00012 21.6 0.2 2.0 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|20090201|ref|NP_616276.1| - 5.7e-05 22.5 0.1 0.00035 20.0 0.1 1.9 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|20090201|ref|NP_616276.1| - 6.3e-05 22.7 0.1 0.00049 19.8 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|20090201|ref|NP_616276.1| - 8.5e-05 22.2 0.0 0.0021 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|20090201|ref|NP_616276.1| - 9.4e-05 22.0 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|20090201|ref|NP_616276.1| - 0.00033 20.0 0.1 0.00054 19.3 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin DUF87 PF01935.17 gi|20090201|ref|NP_616276.1| - 0.00034 20.8 0.2 0.00061 20.0 0.2 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain CLP1_P PF16575.5 gi|20090201|ref|NP_616276.1| - 0.00074 19.4 0.0 0.002 18.0 0.0 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|20090201|ref|NP_616276.1| - 0.0018 18.4 0.1 1.2 9.2 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase ATPase PF06745.13 gi|20090201|ref|NP_616276.1| - 0.003 16.9 0.0 0.0071 15.7 0.0 1.6 2 0 0 2 2 2 1 KaiC AAA_24 PF13479.6 gi|20090201|ref|NP_616276.1| - 0.0037 17.0 0.1 0.012 15.3 0.0 1.9 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|20090201|ref|NP_616276.1| - 0.0056 17.1 0.0 0.037 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|20090201|ref|NP_616276.1| - 0.0058 15.6 0.1 0.047 12.6 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.14 gi|20090201|ref|NP_616276.1| - 0.008 16.1 0.1 0.017 15.0 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|20090201|ref|NP_616276.1| - 0.0088 16.6 0.1 0.021 15.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|20090201|ref|NP_616276.1| - 0.01 15.6 0.2 0.024 14.4 0.1 1.6 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|20090201|ref|NP_616276.1| - 0.011 14.7 0.3 0.023 13.7 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|20090201|ref|NP_616276.1| - 0.019 15.5 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.17 gi|20090201|ref|NP_616276.1| - 0.019 14.6 0.0 0.064 12.9 0.0 1.9 3 0 0 3 3 1 0 Thymidylate kinase AAA_33 PF13671.6 gi|20090201|ref|NP_616276.1| - 0.028 14.6 0.0 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|20090201|ref|NP_616276.1| - 0.029 13.9 0.0 3.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain RNA_helicase PF00910.22 gi|20090201|ref|NP_616276.1| - 0.041 14.3 0.0 0.096 13.1 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_29 PF13555.6 gi|20090201|ref|NP_616276.1| - 0.041 13.6 0.3 0.071 12.9 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|20090201|ref|NP_616276.1| - 0.052 13.3 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|20090201|ref|NP_616276.1| - 0.059 12.9 0.1 0.093 12.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TrkA_N PF02254.18 gi|20090201|ref|NP_616276.1| - 0.083 13.2 0.1 0.98 9.7 0.0 2.3 2 1 1 3 3 2 0 TrkA-N domain NTPase_1 PF03266.15 gi|20090201|ref|NP_616276.1| - 0.087 12.7 0.6 0.23 11.4 0.1 1.9 2 1 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|20090201|ref|NP_616276.1| - 0.089 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|20090201|ref|NP_616276.1| - 0.09 11.9 0.1 0.19 10.8 0.1 1.5 2 0 0 2 2 2 0 G-protein alpha subunit LpxK PF02606.14 gi|20090201|ref|NP_616276.1| - 0.1 11.7 0.1 0.3 10.1 0.1 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_10 PF12846.7 gi|20090201|ref|NP_616276.1| - 0.11 11.5 0.1 0.19 10.6 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain Mur_ligase_M PF08245.12 gi|20090201|ref|NP_616276.1| - 0.12 12.4 0.0 5.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Mur ligase middle domain NB-ARC PF00931.22 gi|20090201|ref|NP_616276.1| - 0.16 11.1 0.1 0.33 10.1 0.1 1.5 2 0 0 2 2 1 0 NB-ARC domain cobW PF02492.19 gi|20090201|ref|NP_616276.1| - 0.18 11.4 0.6 3.4 7.2 0.1 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|20090201|ref|NP_616276.1| - 0.19 11.9 0.0 1.4 9.2 0.1 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase T2SSE PF00437.20 gi|20090201|ref|NP_616276.1| - 0.2 10.7 0.0 0.29 10.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_26 PF13500.6 gi|20090201|ref|NP_616276.1| - 0.22 11.3 0.4 3.9 7.3 0.3 2.2 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|20090201|ref|NP_616276.1| - 0.37 10.1 1.5 0.73 9.1 1.5 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Flavin_Reduct PF01613.18 gi|20090202|ref|NP_616277.1| - 8.2e-17 61.7 0.0 1.1e-16 61.3 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain E1-E2_ATPase PF00122.20 gi|20090203|ref|NP_616278.1| - 5.8e-57 192.1 1.5 1.3e-56 191.0 1.5 1.6 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.26 gi|20090203|ref|NP_616278.1| - 5.9e-44 148.3 3.5 4.2e-14 52.7 0.1 3.6 3 0 0 3 3 3 3 Heavy-metal-associated domain Hydrolase PF00702.26 gi|20090203|ref|NP_616278.1| - 7.9e-44 150.5 3.2 7.9e-44 150.5 3.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|20090203|ref|NP_616278.1| - 7.1e-06 25.9 3.3 0.00039 20.3 1.6 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.6 gi|20090203|ref|NP_616278.1| - 0.0026 17.9 0.1 3.5 7.8 0.0 2.7 2 0 0 2 2 2 2 Papain fold toxin 2 Fer2_BFD PF04324.15 gi|20090203|ref|NP_616278.1| - 0.037 14.4 4.7 2.9 8.3 0.1 3.9 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain SNAD4 PF18750.1 gi|20090203|ref|NP_616278.1| - 0.099 12.8 0.1 30 4.8 0.0 2.9 3 0 0 3 3 3 0 Secreted Novel AID/APOBEC-like Deaminase 4 HAD PF12710.7 gi|20090203|ref|NP_616278.1| - 0.1 13.0 0.0 0.36 11.2 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase ETRAMP PF09716.10 gi|20090204|ref|NP_616279.1| - 0.0019 18.2 0.1 0.0019 18.2 0.1 1.9 3 0 0 3 3 3 1 Malarial early transcribed membrane protein (ETRAMP) DUF2196 PF09962.9 gi|20090205|ref|NP_616280.1| - 1.1e-28 98.9 6.7 1.4e-28 98.7 6.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Beta-lactamase PF00144.24 gi|20090206|ref|NP_616281.1| - 1.7e-65 221.5 0.0 2.5e-65 220.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 gi|20090206|ref|NP_616281.1| - 0.0034 17.0 0.1 0.13 11.9 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase enzyme family DUF4022 PF13214.6 gi|20090206|ref|NP_616281.1| - 0.14 12.4 3.3 0.4 11.0 3.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4022) MFS_1 PF07690.16 gi|20090207|ref|NP_616282.1| - 1.3e-53 182.2 36.3 1.3e-53 182.2 36.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|20090207|ref|NP_616282.1| - 1.7e-12 46.9 23.7 2.7e-12 46.3 23.7 1.3 1 0 0 1 1 1 1 MFS_1 like family MFS_2 PF13347.6 gi|20090207|ref|NP_616282.1| - 1.7e-05 23.6 33.9 4.3e-05 22.3 30.1 2.6 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.24 gi|20090207|ref|NP_616282.1| - 0.0019 17.2 29.1 0.18 10.6 29.1 3.1 1 1 0 1 1 1 1 Sugar (and other) transporter Mem_trans PF03547.18 gi|20090207|ref|NP_616282.1| - 2.5 6.4 15.5 0.054 11.9 2.8 3.0 3 0 0 3 3 3 0 Membrane transport protein Methyltransf_11 PF08241.12 gi|20090208|ref|NP_616283.1| - 3e-23 82.3 0.0 4.7e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090208|ref|NP_616283.1| - 2.3e-22 79.5 0.0 5.9e-22 78.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090208|ref|NP_616283.1| - 4.9e-21 75.1 0.0 6.2e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090208|ref|NP_616283.1| - 3.6e-17 62.5 0.0 4.9e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20090208|ref|NP_616283.1| - 4.1e-14 52.7 0.0 4.8e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090208|ref|NP_616283.1| - 2e-12 47.7 0.0 3e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090208|ref|NP_616283.1| - 1.1e-09 38.0 0.0 1.8e-09 37.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20090208|ref|NP_616283.1| - 5.3e-07 29.3 0.0 7.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|20090208|ref|NP_616283.1| - 2.2e-06 27.2 0.0 2.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|20090208|ref|NP_616283.1| - 9.5e-06 25.7 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|20090208|ref|NP_616283.1| - 6.2e-05 22.7 0.0 9.7e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|20090208|ref|NP_616283.1| - 0.00017 21.1 0.0 0.00024 20.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|20090208|ref|NP_616283.1| - 0.0011 18.9 0.0 0.047 13.5 0.0 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.11 gi|20090208|ref|NP_616283.1| - 0.0013 18.5 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) N6_N4_Mtase PF01555.18 gi|20090208|ref|NP_616283.1| - 0.0027 17.5 0.0 0.23 11.2 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Spermine_synth PF01564.17 gi|20090208|ref|NP_616283.1| - 0.0036 16.8 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_18 PF12847.7 gi|20090208|ref|NP_616283.1| - 0.0042 17.0 0.0 0.0068 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N2227 PF07942.12 gi|20090208|ref|NP_616283.1| - 0.03 13.5 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 N2227-like protein Methyltransf_4 PF02390.17 gi|20090208|ref|NP_616283.1| - 0.046 13.2 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 Putative methyltransferase AdoMet_MTase PF07757.13 gi|20090208|ref|NP_616283.1| - 0.08 13.3 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase NodS PF05401.11 gi|20090208|ref|NP_616283.1| - 0.095 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.19 gi|20090208|ref|NP_616283.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|20090208|ref|NP_616283.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FmrO PF07091.11 gi|20090208|ref|NP_616283.1| - 0.21 11.1 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Multi_Drug_Res PF00893.19 gi|20090209|ref|NP_616284.1| - 2.2e-29 102.0 10.0 2.9e-29 101.6 10.0 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|20090209|ref|NP_616284.1| - 0.0017 18.5 15.8 0.0029 17.8 15.8 1.4 1 1 0 1 1 1 1 EamA-like transporter family TMEM144 PF07857.12 gi|20090209|ref|NP_616284.1| - 0.18 10.8 9.1 0.085 11.8 6.0 1.6 1 1 1 2 2 2 0 Transmembrane family, TMEM144 of transporters SLATT_6 PF18169.1 gi|20090209|ref|NP_616284.1| - 0.39 10.3 2.3 0.35 10.4 1.2 1.4 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF5381 PF17353.2 gi|20090209|ref|NP_616284.1| - 3.5 7.3 10.1 0.072 12.8 2.0 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5381) eIF-1a PF01176.19 gi|20090212|ref|NP_616287.1| - 1.1e-16 60.4 0.4 1.6e-16 59.8 0.4 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DNA_binding_1 PF01035.20 gi|20090213|ref|NP_616288.1| - 0.071 13.2 0.0 0.085 13.0 0.0 1.1 1 0 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, DNA binding domain eIF-1a PF01176.19 gi|20090214|ref|NP_616289.1| - 7.2e-16 57.8 0.4 1.2e-15 57.1 0.2 1.4 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 TPP_enzyme_N PF02776.18 gi|20090215|ref|NP_616290.1| - 3.5e-53 179.7 0.0 2.2e-51 173.9 0.1 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|20090215|ref|NP_616290.1| - 2.4e-36 124.8 0.0 7.6e-36 123.2 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|20090215|ref|NP_616290.1| - 4.4e-27 94.5 0.0 1.5e-26 92.8 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|20090215|ref|NP_616290.1| - 0.0008 19.2 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Molybdopterin PF00384.22 gi|20090215|ref|NP_616290.1| - 0.068 12.1 0.0 2.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Aldedh PF00171.22 gi|20090216|ref|NP_616291.1| - 7.5e-131 436.8 0.0 8.5e-131 436.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF4969 PF16339.5 gi|20090217|ref|NP_616292.1| - 0.17 12.3 0.3 0.17 12.3 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4969) CtaG_Cox11 PF04442.14 gi|20090217|ref|NP_616292.1| - 0.23 11.5 2.1 0.31 11.0 2.1 1.4 1 1 0 1 1 1 0 Cytochrome c oxidase assembly protein CtaG/Cox11 DUF4769 PF15992.5 gi|20090217|ref|NP_616292.1| - 4.1 7.1 6.6 4.9 6.9 6.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4769) Cupredoxin_1 PF13473.6 gi|20090218|ref|NP_616293.1| - 1.6e-11 44.2 0.0 2.5e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|20090218|ref|NP_616293.1| - 5.1e-11 42.9 0.1 0.00036 20.9 0.0 2.2 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Copper-bind PF00127.20 gi|20090219|ref|NP_616294.1| - 2e-10 41.0 4.2 4.6e-09 36.6 0.3 2.8 2 2 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|20090219|ref|NP_616294.1| - 4.3e-10 39.6 0.1 1.4e-09 38.0 0.0 1.9 1 1 0 2 2 2 1 Cupredoxin-like domain CARD_2 PF16739.5 gi|20090219|ref|NP_616294.1| - 2.3 8.2 5.7 65 3.6 0.1 3.6 1 1 2 4 4 4 0 Caspase recruitment domain HTH_ParB PF17762.1 gi|20090219|ref|NP_616294.1| - 2.4 8.0 8.1 48 3.9 0.1 4.6 5 0 0 5 5 5 0 HTH domain found in ParB protein IL4 PF00727.18 gi|20090219|ref|NP_616294.1| - 3.2 8.0 8.9 4.8 7.5 1.0 2.5 1 1 1 2 2 2 0 Interleukin 4 Methyltransf_25 PF13649.6 gi|20090221|ref|NP_616296.1| - 3.4e-12 46.9 0.0 6.8e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090221|ref|NP_616296.1| - 8e-09 35.5 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090221|ref|NP_616296.1| - 6.7e-08 32.5 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20090221|ref|NP_616296.1| - 4.1e-07 29.3 0.0 6.1e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|20090221|ref|NP_616296.1| - 4.4e-07 30.6 0.0 8.5e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090221|ref|NP_616296.1| - 3.7e-06 27.5 0.0 7e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|20090221|ref|NP_616296.1| - 5.2e-06 26.1 0.0 8.3e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|20090221|ref|NP_616296.1| - 6.3e-06 26.1 0.0 9.4e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|20090221|ref|NP_616296.1| - 4.1e-05 22.8 0.0 9.5e-05 21.6 0.0 1.5 1 1 1 2 2 2 1 DREV methyltransferase GidB PF02527.15 gi|20090221|ref|NP_616296.1| - 5.9e-05 22.5 0.0 8.7e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Cons_hypoth95 PF03602.15 gi|20090221|ref|NP_616296.1| - 0.00011 21.9 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|20090221|ref|NP_616296.1| - 0.00011 22.0 0.1 0.00043 20.1 0.1 1.9 1 1 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|20090221|ref|NP_616296.1| - 0.00019 21.0 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|20090221|ref|NP_616296.1| - 0.00026 20.5 0.3 0.00046 19.7 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|20090221|ref|NP_616296.1| - 0.00064 19.1 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|20090221|ref|NP_616296.1| - 0.0019 17.6 0.0 0.0029 16.9 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|20090221|ref|NP_616296.1| - 0.0055 16.4 0.0 0.0095 15.6 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|20090221|ref|NP_616296.1| - 0.0096 15.9 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20090221|ref|NP_616296.1| - 0.025 14.0 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB tRNA_U5-meth_tr PF05958.11 gi|20090221|ref|NP_616296.1| - 0.041 12.9 0.0 0.079 11.9 0.0 1.4 1 1 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Fibrillarin PF01269.17 gi|20090221|ref|NP_616296.1| - 0.051 12.7 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_4 PF02390.17 gi|20090221|ref|NP_616296.1| - 0.074 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase RimK PF08443.11 gi|20090222|ref|NP_616297.1| - 1.6e-45 155.0 0.0 2.2e-45 154.6 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|20090222|ref|NP_616297.1| - 2.2e-17 63.0 0.0 1.2e-16 60.6 0.0 1.9 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain Rimk_N PF18030.1 gi|20090222|ref|NP_616297.1| - 4.1e-16 59.1 0.0 1.2e-15 57.7 0.0 1.8 2 0 0 2 2 2 1 RimK PreATP-grasp domain ATP-grasp_3 PF02655.14 gi|20090222|ref|NP_616297.1| - 1.4e-06 28.5 0.0 2.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|20090222|ref|NP_616297.1| - 2.1e-05 23.9 0.0 0.0025 17.1 0.0 2.5 1 1 2 3 3 3 1 Sugar-transfer associated ATP-grasp Synapsin_C PF02750.14 gi|20090222|ref|NP_616297.1| - 0.00083 18.9 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 Synapsin, ATP binding domain ATP-grasp PF02222.22 gi|20090222|ref|NP_616297.1| - 0.0011 18.6 0.0 0.002 17.7 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|20090222|ref|NP_616297.1| - 0.0021 17.3 0.1 0.017 14.4 0.0 2.3 1 1 0 1 1 1 1 YheC/D like ATP-grasp CPSase_L_D2 PF02786.17 gi|20090222|ref|NP_616297.1| - 0.046 13.2 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Herpes_HEPA PF03324.14 gi|20090222|ref|NP_616297.1| - 0.09 13.2 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Herpesvirus DNA helicase/primase complex associated protein TTL PF03133.15 gi|20090222|ref|NP_616297.1| - 0.14 11.3 0.0 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family TPR_1 PF00515.28 gi|20090223|ref|NP_616298.1| - 8.6e-93 300.7 34.6 1.5e-09 37.3 0.0 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090223|ref|NP_616298.1| - 4.4e-77 248.1 37.5 2.8e-07 30.1 0.0 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090223|ref|NP_616298.1| - 3.5e-72 237.9 41.6 7.9e-09 35.1 0.1 10.1 4 2 6 10 10 10 10 TPR repeat TPR_8 PF13181.6 gi|20090223|ref|NP_616298.1| - 5e-66 213.5 31.2 7.6e-07 28.9 0.0 10.2 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090223|ref|NP_616298.1| - 3.3e-56 183.7 19.8 8.6e-07 28.9 0.0 10.2 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20090223|ref|NP_616298.1| - 1.5e-52 175.8 52.6 1.6e-10 41.1 0.6 7.6 1 1 9 10 10 10 9 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090223|ref|NP_616298.1| - 1.6e-52 175.9 34.6 8.3e-11 42.4 1.7 7.0 1 1 6 8 8 8 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090223|ref|NP_616298.1| - 5.9e-44 145.0 21.0 9.1e-05 23.0 0.1 10.1 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090223|ref|NP_616298.1| - 1.9e-43 146.8 41.5 4.1e-09 36.8 0.2 7.1 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090223|ref|NP_616298.1| - 1.1e-28 98.2 27.2 0.00066 19.5 0.2 10.1 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090223|ref|NP_616298.1| - 1.1e-27 94.0 19.8 0.0003 20.6 0.0 10.1 9 1 1 10 10 10 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090223|ref|NP_616298.1| - 9.3e-26 89.8 5.3 4.4e-05 23.5 0.1 6.6 1 1 6 8 8 8 7 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090223|ref|NP_616298.1| - 3.6e-23 80.6 18.1 0.012 16.2 0.1 10.2 10 0 0 10 10 10 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090223|ref|NP_616298.1| - 1.3e-22 79.8 14.0 4e-07 30.2 0.0 4.7 3 1 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|20090223|ref|NP_616298.1| - 1.3e-15 57.7 14.9 0.0036 17.4 0.4 7.8 1 1 5 6 6 6 4 Domain of Unknown Function (DUF3856) MIT PF04212.18 gi|20090223|ref|NP_616298.1| - 2.9e-15 56.1 30.9 0.023 14.8 0.1 9.9 10 0 0 10 10 10 5 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|20090223|ref|NP_616298.1| - 1.4e-13 50.7 7.6 0.015 14.3 0.1 5.2 2 2 3 5 5 5 4 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|20090223|ref|NP_616298.1| - 2.5e-09 36.7 12.8 0.0047 16.2 1.1 4.6 1 1 4 5 5 5 4 Tetratricopeptide repeat BTAD PF03704.17 gi|20090223|ref|NP_616298.1| - 3e-09 37.5 13.0 0.17 12.3 0.0 4.9 2 2 0 4 4 4 4 Bacterial transcriptional activator domain PPR PF01535.20 gi|20090223|ref|NP_616298.1| - 5.6e-09 35.7 13.8 1 9.8 0.1 8.6 9 0 0 9 9 9 2 PPR repeat SRP_TPR_like PF17004.5 gi|20090223|ref|NP_616298.1| - 1.5e-08 34.7 8.9 0.0059 16.6 1.2 4.9 2 2 1 4 4 4 3 Putative TPR-like repeat Coatomer_E PF04733.14 gi|20090223|ref|NP_616298.1| - 3.1e-08 33.4 10.7 3.7e-05 23.3 0.8 4.3 1 1 3 4 4 4 2 Coatomer epsilon subunit TPR_3 PF07720.12 gi|20090223|ref|NP_616298.1| - 1.1e-07 31.7 21.2 0.35 10.9 0.1 9.4 9 1 1 10 10 9 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|20090223|ref|NP_616298.1| - 6.3e-07 29.6 8.3 1.7 9.0 0.0 5.5 3 1 2 5 5 5 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|20090223|ref|NP_616298.1| - 7.5e-07 28.5 14.4 1.7 8.2 0.5 8.2 10 0 0 10 10 9 1 SHNi-TPR FAT PF02259.23 gi|20090223|ref|NP_616298.1| - 1e-06 28.2 10.4 0.1 11.8 0.4 4.9 1 1 3 4 4 4 3 FAT domain TPR_4 PF07721.14 gi|20090223|ref|NP_616298.1| - 7.4e-06 26.1 0.1 1.3e+02 3.7 0.0 6.6 7 0 0 7 7 6 0 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|20090223|ref|NP_616298.1| - 1.5e-05 25.2 7.7 5.4 7.3 0.1 7.0 5 2 3 8 8 6 0 MIT domain of nuclear receptor-binding factor 2 Fis1_TPR_C PF14853.6 gi|20090223|ref|NP_616298.1| - 1.8e-05 24.7 14.2 17 5.5 0.0 8.0 4 4 5 9 9 8 0 Fis1 C-terminal tetratricopeptide repeat Rapsyn_N PF10579.9 gi|20090223|ref|NP_616298.1| - 0.00079 19.5 0.2 4.9 7.3 0.0 4.6 3 1 2 5 5 5 0 Rapsyn N-terminal myristoylation and linker region TPR_5 PF12688.7 gi|20090223|ref|NP_616298.1| - 0.0013 19.0 9.8 0.76 10.0 0.3 5.8 4 2 1 5 5 4 1 Tetratrico peptide repeat Lambda_Kil PF06301.11 gi|20090223|ref|NP_616298.1| - 0.003 17.1 2.3 16 5.2 0.0 6.2 8 0 0 8 8 7 0 Bacteriophage lambda Kil protein FliJ PF02050.16 gi|20090223|ref|NP_616298.1| - 0.005 17.1 2.2 7.5 6.8 0.0 4.3 4 1 0 4 4 4 0 Flagellar FliJ protein DUF1202 PF06717.11 gi|20090223|ref|NP_616298.1| - 0.0086 15.5 4.6 0.37 10.1 0.2 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF1202) ChAPs PF09295.10 gi|20090223|ref|NP_616298.1| - 0.011 14.8 1.7 0.16 10.9 0.1 2.4 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF627 PF04781.12 gi|20090223|ref|NP_616298.1| - 0.015 15.3 2.2 23 5.1 0.0 4.1 3 2 1 4 4 4 0 Protein of unknown function (DUF627) Alkyl_sulf_dimr PF14863.6 gi|20090223|ref|NP_616298.1| - 0.016 15.7 6.0 16 6.0 0.0 4.5 2 2 2 5 5 5 0 Alkyl sulfatase dimerisation ANAPC5 PF12862.7 gi|20090223|ref|NP_616298.1| - 0.028 14.5 13.0 2.2 8.4 0.3 6.4 4 3 3 7 7 6 0 Anaphase-promoting complex subunit 5 DUF5112 PF17139.4 gi|20090223|ref|NP_616298.1| - 0.041 13.4 5.6 5.6 6.4 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF5112) RPN7 PF10602.9 gi|20090223|ref|NP_616298.1| - 0.17 11.6 14.6 2.9 7.6 0.3 5.4 3 3 2 5 5 5 0 26S proteasome subunit RPN7 Aida_N PF08910.10 gi|20090223|ref|NP_616298.1| - 0.18 12.2 9.6 32 5.0 0.1 5.2 3 1 2 5 5 5 0 Aida N-terminus PknG_TPR PF16918.5 gi|20090223|ref|NP_616298.1| - 0.21 10.2 3.5 0.55 8.9 0.1 2.3 2 0 0 2 2 2 0 Protein kinase G tetratricopeptide repeat NTase_sub_bind PF08780.11 gi|20090223|ref|NP_616298.1| - 0.27 11.2 5.7 3.2 7.7 0.2 3.8 4 0 0 4 4 3 0 Nucleotidyltransferase substrate binding protein like LAL_C2 PF18603.1 gi|20090223|ref|NP_616298.1| - 0.27 11.4 3.0 0.42 10.8 0.0 2.9 3 0 0 3 3 2 0 L-amino acid ligase C-terminal domain 2 Acyl-CoA_ox_N PF14749.6 gi|20090223|ref|NP_616298.1| - 0.38 11.3 2.2 7.5 7.1 0.0 3.5 4 1 1 5 5 3 0 Acyl-coenzyme A oxidase N-terminal HTH_Bact PF18768.1 gi|20090223|ref|NP_616298.1| - 0.76 9.4 11.8 19 5.0 0.0 6.1 8 0 0 8 8 5 0 Helix-turn-helix bacterial domain DUF1510 PF07423.11 gi|20090223|ref|NP_616298.1| - 1.8 8.8 4.7 20 5.4 0.4 4.4 4 1 1 5 5 4 0 Domain of unknown function (DUF1510) Sda PF08970.10 gi|20090223|ref|NP_616298.1| - 5.4 6.8 17.3 18 5.1 0.0 6.9 8 0 0 8 8 7 0 Sporulation inhibitor A HAD_2 PF13419.6 gi|20090224|ref|NP_616299.1| - 2e-29 103.0 0.0 3.2e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20090224|ref|NP_616299.1| - 1.5e-17 64.6 0.0 1.4e-16 61.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20090224|ref|NP_616299.1| - 2.8e-09 36.9 0.0 6.3e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|20090224|ref|NP_616299.1| - 2.1e-06 28.3 0.1 3.1e-06 27.7 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CheR PF01739.18 gi|20090224|ref|NP_616299.1| - 0.025 14.1 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain AcylCoA_dehyd_C PF12186.8 gi|20090224|ref|NP_616299.1| - 0.026 14.6 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase C terminal PGP_phosphatase PF09419.10 gi|20090224|ref|NP_616299.1| - 0.18 11.4 0.0 4 7.0 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase TPR_1 PF00515.28 gi|20090225|ref|NP_616300.1| - 4.7e-76 247.7 24.0 2.8e-11 42.7 0.2 8.1 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090225|ref|NP_616300.1| - 2.2e-58 189.7 22.7 6.9e-09 35.2 0.2 8.1 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090225|ref|NP_616300.1| - 1.4e-49 162.2 20.1 7.2e-08 32.1 0.1 8.1 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090225|ref|NP_616300.1| - 3.4e-41 138.7 23.2 1.4e-09 37.5 0.1 8.5 5 2 3 8 8 8 8 TPR repeat TPR_12 PF13424.6 gi|20090225|ref|NP_616300.1| - 3e-35 120.3 9.8 4.1e-11 43.0 0.0 5.9 3 1 3 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090225|ref|NP_616300.1| - 5.1e-34 114.2 12.3 8.3e-05 22.7 0.1 8.7 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090225|ref|NP_616300.1| - 2.9e-33 114.3 8.8 3e-08 34.2 0.0 5.2 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090225|ref|NP_616300.1| - 6.7e-30 101.2 14.4 0.00061 20.4 0.0 8.1 3 3 5 8 8 8 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090225|ref|NP_616300.1| - 4.7e-26 90.7 3.5 3.1e-07 30.4 1.4 5.6 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090225|ref|NP_616300.1| - 1.5e-23 83.0 15.1 1.1e-05 25.8 0.3 6.5 2 2 3 6 6 6 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090225|ref|NP_616300.1| - 3.5e-22 77.5 14.2 0.0096 16.5 0.3 8.1 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090225|ref|NP_616300.1| - 3.2e-19 68.1 21.5 0.014 15.3 0.2 7.8 8 0 0 8 8 8 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090225|ref|NP_616300.1| - 5.5e-15 55.4 10.1 6.3e-07 29.5 0.5 4.9 1 1 5 6 6 6 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|20090225|ref|NP_616300.1| - 3e-13 48.8 9.2 0.12 12.5 0.0 7.7 7 1 1 8 8 8 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|20090225|ref|NP_616300.1| - 3.6e-13 49.8 7.5 0.00041 20.4 0.1 5.8 1 1 4 6 6 6 2 Domain of Unknown Function (DUF3856) SRP_TPR_like PF17004.5 gi|20090225|ref|NP_616300.1| - 2.6e-09 37.1 6.7 0.0019 18.2 0.2 3.8 1 1 3 4 4 4 2 Putative TPR-like repeat MIT PF04212.18 gi|20090225|ref|NP_616300.1| - 6.5e-09 35.7 21.9 0.44 10.6 0.1 7.7 4 2 4 8 8 8 2 MIT (microtubule interacting and transport) domain TPR_20 PF14561.6 gi|20090225|ref|NP_616300.1| - 1.6e-07 31.6 1.1 0.16 12.3 0.0 5.0 2 2 3 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|20090225|ref|NP_616300.1| - 3.8e-07 29.4 6.6 0.018 14.0 0.1 4.2 1 1 2 4 4 4 2 NMDA receptor-regulated protein 1 ChAPs PF09295.10 gi|20090225|ref|NP_616300.1| - 3e-06 26.5 0.8 0.0019 17.3 0.2 2.1 2 0 0 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) Fis1_TPR_C PF14853.6 gi|20090225|ref|NP_616300.1| - 3.5e-06 27.0 13.0 0.23 11.6 0.1 5.9 6 2 2 8 8 6 2 Fis1 C-terminal tetratricopeptide repeat HTH_Bact PF18768.1 gi|20090225|ref|NP_616300.1| - 4.6e-06 26.1 3.6 7 6.3 0.0 6.8 7 0 0 7 7 6 0 Helix-turn-helix bacterial domain TPR_15 PF13429.6 gi|20090225|ref|NP_616300.1| - 3.8e-05 23.1 9.6 2.6 7.2 0.4 5.0 1 1 4 6 6 6 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|20090225|ref|NP_616300.1| - 0.0001 22.1 4.0 0.011 15.5 0.0 4.2 2 2 2 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 BTAD PF03704.17 gi|20090225|ref|NP_616300.1| - 0.00031 21.2 6.0 0.83 10.1 0.0 4.6 3 1 2 5 5 5 2 Bacterial transcriptional activator domain DUF627 PF04781.12 gi|20090225|ref|NP_616300.1| - 0.00032 20.7 0.9 2.5 8.1 0.0 4.1 3 1 1 5 5 4 1 Protein of unknown function (DUF627) Coatomer_E PF04733.14 gi|20090225|ref|NP_616300.1| - 0.00041 19.9 1.1 0.92 8.9 0.0 3.1 2 1 2 4 4 4 2 Coatomer epsilon subunit FAT PF02259.23 gi|20090225|ref|NP_616300.1| - 0.00054 19.3 1.7 0.75 8.9 0.2 3.7 1 1 2 3 3 3 1 FAT domain DUF2550 PF10739.9 gi|20090225|ref|NP_616300.1| - 0.0019 18.2 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2550) MAS20 PF02064.15 gi|20090225|ref|NP_616300.1| - 0.0066 16.5 0.1 28 4.8 0.0 4.9 4 2 2 6 6 6 0 MAS20 protein import receptor TPR_3 PF07720.12 gi|20090225|ref|NP_616300.1| - 0.011 15.7 19.7 0.039 13.9 0.0 7.0 9 0 0 9 9 7 0 Tetratricopeptide repeat SNAP PF14938.6 gi|20090225|ref|NP_616300.1| - 0.013 15.0 17.2 0.55 9.6 0.6 4.8 2 2 2 5 5 5 0 Soluble NSF attachment protein, SNAP RPN7 PF10602.9 gi|20090225|ref|NP_616300.1| - 0.014 15.1 9.6 0.018 14.7 1.1 4.1 2 2 1 4 4 4 0 26S proteasome subunit RPN7 DUF4919 PF16266.5 gi|20090225|ref|NP_616300.1| - 0.027 14.4 1.3 0.31 11.0 0.1 2.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4919) UPF0122 PF04297.14 gi|20090225|ref|NP_616300.1| - 0.029 14.6 3.3 4.2 7.6 0.0 4.5 3 2 2 5 5 5 0 Putative helix-turn-helix protein, YlxM / p13 like GldM_N PF12081.8 gi|20090225|ref|NP_616300.1| - 0.055 13.5 1.1 26 4.8 0.0 3.9 2 2 2 4 4 4 0 GldM N-terminal domain BofC_C PF08955.10 gi|20090225|ref|NP_616300.1| - 0.11 12.6 0.0 13 5.9 0.0 3.6 4 1 0 4 4 4 0 BofC C-terminal domain Wzy_C_2 PF11846.8 gi|20090225|ref|NP_616300.1| - 0.14 12.1 1.5 5.2 6.9 0.0 2.9 3 1 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal Transcrip_act PF04949.13 gi|20090225|ref|NP_616300.1| - 0.14 12.0 4.0 33 4.3 0.1 3.9 4 0 0 4 4 3 0 Transcriptional activator RIG-I_C PF18119.1 gi|20090225|ref|NP_616300.1| - 0.16 12.0 2.0 45 4.0 0.0 4.0 3 2 1 4 4 4 0 RIG-I receptor C-terminal domain Peptidase_M15_4 PF13539.6 gi|20090225|ref|NP_616300.1| - 0.16 12.5 1.3 61 4.2 0.0 3.9 2 2 2 4 4 4 0 D-alanyl-D-alanine carboxypeptidase HTH_OrfB_IS605 PF12323.8 gi|20090225|ref|NP_616300.1| - 0.24 10.9 2.8 1 8.9 0.1 3.2 4 0 0 4 4 2 0 Helix-turn-helix domain SHNi-TPR PF10516.9 gi|20090225|ref|NP_616300.1| - 0.57 9.7 17.8 0.93 9.0 0.1 5.3 6 0 0 6 6 5 0 SHNi-TPR PMBR PF09373.10 gi|20090225|ref|NP_616300.1| - 3.3 8.0 6.4 95 3.4 0.0 4.4 5 0 0 5 5 4 0 Pseudomurein-binding repeat Sel1 PF08238.12 gi|20090225|ref|NP_616300.1| - 3.9 8.3 8.2 5.8 7.7 0.1 4.4 3 1 1 4 4 3 0 Sel1 repeat FKBP_N_2 PF18023.1 gi|20090226|ref|NP_616301.1| - 0.18 11.9 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 BDBT FKBP like N-terminal Response_reg PF00072.24 gi|20090227|ref|NP_616302.1| - 1.3e-19 70.4 0.0 1.4e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HTH_IclR PF09339.10 gi|20090228|ref|NP_616303.1| - 9.1e-05 22.2 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20090228|ref|NP_616303.1| - 0.00013 21.8 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20090228|ref|NP_616303.1| - 0.0004 19.9 0.1 0.00062 19.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20090228|ref|NP_616303.1| - 0.0022 17.9 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|20090228|ref|NP_616303.1| - 0.0072 16.2 0.0 0.0092 15.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|20090228|ref|NP_616303.1| - 0.0072 16.2 0.1 0.01 15.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|20090228|ref|NP_616303.1| - 0.016 15.1 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|20090228|ref|NP_616303.1| - 0.024 15.0 0.0 0.03 14.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|20090228|ref|NP_616303.1| - 0.038 13.9 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain Phage_rep_O PF04492.13 gi|20090228|ref|NP_616303.1| - 0.059 14.0 0.0 0.07 13.7 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_36 PF13730.6 gi|20090228|ref|NP_616303.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.21 gi|20090228|ref|NP_616303.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_20 PF12840.7 gi|20090228|ref|NP_616303.1| - 0.19 11.8 0.0 0.25 11.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Pyr_redox_2 PF07992.14 gi|20090229|ref|NP_616304.1| - 5.2e-49 167.0 0.9 6.2e-49 166.8 0.9 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|20090229|ref|NP_616304.1| - 1.2e-32 113.4 6.1 8.7e-25 87.6 0.9 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|20090229|ref|NP_616304.1| - 4.6e-15 55.9 7.6 2.6e-13 50.3 0.4 3.3 2 2 2 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|20090229|ref|NP_616304.1| - 1.2e-08 34.1 1.8 0.00048 18.9 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|20090229|ref|NP_616304.1| - 3e-08 33.4 2.5 1.4e-05 24.7 0.1 3.1 2 1 1 3 3 3 2 FAD dependent oxidoreductase DAO PF01266.24 gi|20090229|ref|NP_616304.1| - 1.9e-06 27.7 4.0 0.0097 15.5 0.5 3.5 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|20090229|ref|NP_616304.1| - 6e-06 25.6 4.6 2.9e-05 23.4 0.2 3.3 3 1 1 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.6 gi|20090229|ref|NP_616304.1| - 6.7e-06 26.2 0.4 0.00056 20.1 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|20090229|ref|NP_616304.1| - 8.8e-06 25.0 7.2 0.0035 16.5 0.2 3.9 3 1 1 4 4 4 2 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|20090229|ref|NP_616304.1| - 9.1e-06 25.0 1.1 0.0043 16.3 0.1 2.8 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|20090229|ref|NP_616304.1| - 1.7e-05 24.2 0.5 0.0017 17.6 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|20090229|ref|NP_616304.1| - 0.00027 20.3 3.3 0.014 14.7 0.2 2.8 2 1 1 3 3 3 1 Thi4 family FMO-like PF00743.19 gi|20090229|ref|NP_616304.1| - 0.0097 14.4 0.1 0.032 12.7 0.0 1.8 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_binding_7 PF13241.6 gi|20090229|ref|NP_616304.1| - 0.014 15.9 0.8 0.18 12.3 0.2 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|20090229|ref|NP_616304.1| - 0.016 14.5 0.5 0.99 8.7 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|20090229|ref|NP_616304.1| - 0.039 12.8 3.2 2.4 6.9 0.0 2.8 3 0 0 3 3 3 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|20090229|ref|NP_616304.1| - 0.068 12.2 1.8 0.47 9.4 0.3 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|20090229|ref|NP_616304.1| - 0.35 10.9 4.1 3.8 7.5 0.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thioredoxin_3 PF13192.6 gi|20090230|ref|NP_616305.1| - 5.3e-10 39.2 0.0 6.1e-10 39.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|20090230|ref|NP_616305.1| - 1.9e-06 28.0 0.0 2.6e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|20090230|ref|NP_616305.1| - 0.00011 22.2 0.0 0.00011 22.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|20090230|ref|NP_616305.1| - 0.037 14.5 0.0 0.048 14.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain DSBA PF01323.20 gi|20090230|ref|NP_616305.1| - 0.054 13.3 0.0 0.059 13.1 0.0 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain TP_methylase PF00590.20 gi|20090231|ref|NP_616306.1| - 9.6e-18 64.9 0.0 1.2e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.13 gi|20090232|ref|NP_616307.1| - 3.4e-31 107.1 1.0 4.1e-31 106.9 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF555 PF04475.12 gi|20090233|ref|NP_616308.1| - 2.3e-49 165.9 0.1 2.8e-49 165.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.12 gi|20090233|ref|NP_616308.1| - 0.099 12.9 0.2 1.3 9.4 0.0 2.2 2 0 0 2 2 2 0 Dodecin PfkB PF00294.24 gi|20090234|ref|NP_616309.1| - 1.9e-55 188.3 0.0 2.5e-55 187.9 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HAP2-GCS1 PF10699.9 gi|20090234|ref|NP_616309.1| - 0.057 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Male gamete fusion factor Diphthami_syn_2 PF01902.17 gi|20090235|ref|NP_616310.1| - 2.3e-75 252.8 0.3 2.7e-75 252.7 0.3 1.0 1 0 0 1 1 1 1 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|20090235|ref|NP_616310.1| - 0.14 10.9 0.0 0.57 8.9 0.0 1.8 2 0 0 2 2 2 0 tRNA methyl transferase AIRC PF00731.20 gi|20090237|ref|NP_616312.1| - 1.7e-43 147.7 0.7 2e-43 147.5 0.7 1.0 1 0 0 1 1 1 1 AIR carboxylase DXP_reductoisom PF02670.16 gi|20090237|ref|NP_616312.1| - 0.047 14.4 0.0 0.065 14.0 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase CM_2 PF01817.21 gi|20090238|ref|NP_616313.1| - 7.8e-14 51.8 5.2 8.9e-14 51.6 5.2 1.0 1 0 0 1 1 1 1 Chorismate mutase type II FTCD_C PF04961.12 gi|20090238|ref|NP_616313.1| - 0.0059 16.4 0.2 0.0063 16.3 0.2 1.0 1 0 0 1 1 1 1 Formiminotransferase-cyclodeaminase Osmo_CC PF08946.10 gi|20090238|ref|NP_616313.1| - 0.13 12.5 2.2 0.29 11.4 2.2 1.5 1 0 0 1 1 1 0 Osmosensory transporter coiled coil GHMP_kinases_N PF00288.26 gi|229017562|ref|NP_616314.2| - 2.5e-11 43.6 1.5 6.3e-11 42.3 1.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|229017562|ref|NP_616314.2| - 3.1e-05 24.3 0.1 0.0001 22.6 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal FlpD PF02662.16 gi|229017562|ref|NP_616314.2| - 0.074 13.1 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit rve PF00665.26 gi|20090240|ref|NP_616315.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090240|ref|NP_616315.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20090240|ref|NP_616315.1| - 7.5e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20090240|ref|NP_616315.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20090240|ref|NP_616315.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090240|ref|NP_616315.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20090240|ref|NP_616315.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20090240|ref|NP_616315.1| - 0.11 12.2 0.5 0.5 10.1 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment PhoU PF01895.19 gi|20090241|ref|NP_616316.1| - 7.5e-25 87.2 8.0 4.4e-16 59.1 0.4 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|20090241|ref|NP_616316.1| - 1.7e-09 37.4 0.1 3e-09 36.6 0.1 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Catalase-rel PF06628.12 gi|20090241|ref|NP_616316.1| - 0.053 13.7 0.3 8.4 6.7 0.1 2.8 2 1 0 2 2 2 0 Catalase-related immune-responsive FliS PF02561.14 gi|20090241|ref|NP_616316.1| - 0.064 13.5 0.5 0.13 12.5 0.5 1.5 1 0 0 1 1 1 0 Flagellar protein FliS MMR_HSR1 PF01926.23 gi|20090242|ref|NP_616317.1| - 3.5e-16 59.3 0.1 4.7e-16 58.9 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|20090242|ref|NP_616317.1| - 2.7e-13 49.9 1.4 1.1e-05 25.1 0.1 3.0 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|20090242|ref|NP_616317.1| - 1.5e-06 28.2 0.0 0.0028 17.6 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|20090242|ref|NP_616317.1| - 4.3e-06 26.3 0.0 0.013 14.9 0.0 2.5 2 0 0 2 2 2 2 ADP-ribosylation factor family Septin PF00735.18 gi|20090242|ref|NP_616317.1| - 3.4e-05 23.3 0.0 4.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Septin Roc PF08477.13 gi|20090242|ref|NP_616317.1| - 0.00028 21.1 0.1 0.12 12.6 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|20090242|ref|NP_616317.1| - 0.0011 18.5 0.0 0.078 12.4 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|20090242|ref|NP_616317.1| - 0.0034 16.9 0.1 0.017 14.7 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_18 PF13238.6 gi|20090242|ref|NP_616317.1| - 0.0046 17.5 0.0 0.01 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|20090242|ref|NP_616317.1| - 0.0055 16.4 0.2 0.019 14.7 0.2 1.8 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|20090242|ref|NP_616317.1| - 0.0065 15.7 0.0 0.0072 15.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.27 gi|20090242|ref|NP_616317.1| - 0.011 16.2 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|20090242|ref|NP_616317.1| - 0.02 15.3 0.0 0.029 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|20090242|ref|NP_616317.1| - 0.023 15.1 0.0 0.057 13.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1_Xtn PF16897.5 gi|20090242|ref|NP_616317.1| - 0.023 14.7 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MobB PF03205.14 gi|20090242|ref|NP_616317.1| - 0.035 14.0 0.0 0.077 12.9 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_35 PF14516.6 gi|20090242|ref|NP_616317.1| - 0.058 12.2 0.0 0.079 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.6 gi|20090242|ref|NP_616317.1| - 0.061 13.6 0.0 0.17 12.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|20090242|ref|NP_616317.1| - 0.062 13.2 0.0 0.079 12.9 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|20090242|ref|NP_616317.1| - 0.064 12.8 0.2 1.9 8.1 0.2 2.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|20090242|ref|NP_616317.1| - 0.088 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|20090242|ref|NP_616317.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NTPase Parvo_NS1 PF01057.17 gi|20090242|ref|NP_616317.1| - 0.17 10.9 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TniB PF05621.11 gi|20090242|ref|NP_616317.1| - 0.19 11.1 0.0 0.3 10.5 0.0 1.7 1 1 0 1 1 1 0 Bacterial TniB protein DUF2073 PF09846.9 gi|20090243|ref|NP_616318.1| - 1.1e-46 157.0 0.9 1.3e-46 156.7 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) GatB_Yqey PF02637.18 gi|20090243|ref|NP_616318.1| - 0.0029 17.5 0.9 0.0037 17.2 0.9 1.3 1 0 0 1 1 1 1 GatB domain SIS PF01380.22 gi|20090245|ref|NP_616320.1| - 4.1e-17 62.2 0.0 7e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|20090245|ref|NP_616320.1| - 7.4e-07 29.3 2.6 0.0087 16.1 0.2 2.2 1 1 1 2 2 2 2 SIS domain Glu_dehyd_C PF16912.5 gi|20090245|ref|NP_616320.1| - 0.0018 17.8 0.1 0.0042 16.6 0.1 1.5 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus SCAPER_N PF16501.5 gi|20090245|ref|NP_616320.1| - 0.03 14.3 0.1 0.43 10.6 0.5 2.2 2 0 0 2 2 2 0 S phase cyclin A-associated protein in the endoplasmic reticulum Aminotran_1_2 PF00155.21 gi|20090246|ref|NP_616321.1| - 2.2e-67 227.8 0.0 2.7e-67 227.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|20090246|ref|NP_616321.1| - 1.4e-11 44.3 0.2 2.2e-11 43.7 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|20090246|ref|NP_616321.1| - 4.7e-11 42.3 0.1 9.1e-11 41.3 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|20090246|ref|NP_616321.1| - 2.8e-09 36.0 0.1 4.3e-09 35.4 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|20090246|ref|NP_616321.1| - 0.0012 18.1 0.0 0.0025 17.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Phage_portal PF04860.12 gi|20090246|ref|NP_616321.1| - 0.041 13.1 0.0 7.1 5.7 0.0 2.3 2 0 0 2 2 2 0 Phage portal protein DNA_processg_A PF02481.15 gi|20090246|ref|NP_616321.1| - 0.098 11.9 1.5 1.6 7.9 0.2 2.4 2 0 0 2 2 2 0 DNA recombination-mediator protein A DUF1670 PF07900.11 gi|20090247|ref|NP_616322.1| - 1.7e-47 161.6 2.7 1.9e-47 161.5 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20090247|ref|NP_616322.1| - 2.6e-06 27.0 0.0 0.012 15.4 0.0 3.0 2 1 1 3 3 3 2 Homeodomain-like domain HTH_24 PF13412.6 gi|20090247|ref|NP_616322.1| - 0.00019 20.9 0.3 3.2 7.4 0.0 3.4 3 1 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|20090247|ref|NP_616322.1| - 0.0014 18.5 0.1 0.021 14.7 0.0 2.5 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Terminase_5 PF06056.12 gi|20090247|ref|NP_616322.1| - 0.0016 18.3 0.3 0.014 15.3 0.3 2.1 1 1 1 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.12 gi|20090247|ref|NP_616322.1| - 0.0017 17.9 0.6 1 9.1 0.1 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20090247|ref|NP_616322.1| - 0.002 18.1 0.0 0.28 11.2 0.0 2.9 2 1 1 3 3 3 1 Winged helix-turn helix HTH_17 PF12728.7 gi|20090247|ref|NP_616322.1| - 0.0027 17.8 0.1 1.1 9.5 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20090247|ref|NP_616322.1| - 0.013 15.2 0.0 7.1 6.5 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|20090247|ref|NP_616322.1| - 0.022 14.7 0.3 1.5 8.8 0.1 2.7 2 1 1 3 3 3 0 HTH domain MRP-S23 PF10484.9 gi|20090247|ref|NP_616322.1| - 0.029 14.6 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal protein S23 HTH_28 PF13518.6 gi|20090247|ref|NP_616322.1| - 0.052 13.7 0.1 3 8.0 0.0 2.4 2 1 1 3 3 2 0 Helix-turn-helix domain GerE PF00196.19 gi|20090247|ref|NP_616322.1| - 0.055 13.0 0.2 10 5.8 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family KorB PF08535.10 gi|20090247|ref|NP_616322.1| - 0.064 13.3 0.0 0.37 10.8 0.0 2.2 2 1 0 2 2 2 0 KorB domain Phage_terminase PF10668.9 gi|20090247|ref|NP_616322.1| - 0.065 13.3 0.1 0.75 9.9 0.1 2.2 2 0 0 2 2 2 0 Phage terminase small subunit DUF1670 PF07900.11 gi|20090248|ref|NP_616323.1| - 7.8e-38 130.0 0.1 8.8e-38 129.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) DUF1670 PF07900.11 gi|20090249|ref|NP_616324.1| - 3.2e-85 284.9 0.2 3.8e-85 284.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20090249|ref|NP_616324.1| - 2e-05 24.5 0.0 0.0053 16.7 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_28 PF13518.6 gi|20090249|ref|NP_616324.1| - 0.0046 17.1 0.1 0.81 9.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|20090249|ref|NP_616324.1| - 0.013 15.4 0.4 0.058 13.4 0.0 2.2 3 0 0 3 3 3 0 HTH domain HTH_29 PF13551.6 gi|20090249|ref|NP_616324.1| - 0.019 15.0 0.1 6.9 6.8 0.0 3.1 3 0 0 3 3 3 0 Winged helix-turn helix HTH_24 PF13412.6 gi|20090249|ref|NP_616324.1| - 0.023 14.3 0.1 0.13 11.9 0.2 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|20090249|ref|NP_616324.1| - 0.023 14.5 0.1 14 5.6 0.0 3.1 2 1 1 3 3 3 0 Homeodomain-like domain Terminase_5 PF06056.12 gi|20090249|ref|NP_616324.1| - 0.035 14.0 0.5 1.3 9.0 0.1 3.0 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) DsbD PF02683.15 gi|20090250|ref|NP_616325.1| - 1.2e-15 58.1 16.9 1.4e-15 57.8 16.9 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region NOG1_N PF17835.1 gi|20090251|ref|NP_616326.1| - 9.1e-48 162.2 0.2 1.4e-47 161.7 0.2 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|20090251|ref|NP_616326.1| - 1.5e-22 79.1 0.1 2.9e-22 78.2 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|20090251|ref|NP_616326.1| - 7.1e-19 68.0 0.0 1.7e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|20090251|ref|NP_616326.1| - 1.3e-09 37.8 0.0 2.5e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 gi|20090251|ref|NP_616326.1| - 0.00024 20.6 0.0 0.0045 16.5 0.0 2.6 1 1 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|20090251|ref|NP_616326.1| - 0.00097 19.1 0.1 0.026 14.4 0.0 2.7 2 1 0 2 2 2 1 RsgA GTPase GTP_EFTU PF00009.27 gi|20090251|ref|NP_616326.1| - 0.015 14.9 0.0 0.14 11.7 0.0 2.2 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|20090251|ref|NP_616326.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 AIG1 family AAA_24 PF13479.6 gi|20090251|ref|NP_616326.1| - 0.029 14.1 0.1 2.2 8.0 0.0 2.6 2 1 1 3 3 3 0 AAA domain MeaB PF03308.16 gi|20090251|ref|NP_616326.1| - 0.051 12.6 0.0 2.1 7.2 0.0 2.7 2 1 1 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB HrcA_DNA-bdg PF03444.15 gi|20090252|ref|NP_616327.1| - 2.5e-38 129.6 0.3 6.6e-38 128.2 0.3 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|20090252|ref|NP_616327.1| - 8.3e-23 80.6 0.5 1.6e-10 41.2 0.0 2.6 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|20090252|ref|NP_616327.1| - 2.3e-08 34.3 0.1 8.5e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|20090252|ref|NP_616327.1| - 4.2e-07 29.8 0.1 1.2e-06 28.3 0.1 1.9 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|20090252|ref|NP_616327.1| - 0.0022 17.8 0.0 0.011 15.7 0.0 2.2 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|20090252|ref|NP_616327.1| - 0.076 12.7 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 PRA-PH PF01503.17 gi|20090253|ref|NP_616328.1| - 2.9e-13 50.1 0.1 3.3e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|20090253|ref|NP_616328.1| - 0.0011 19.1 0.9 0.0015 18.7 0.9 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain FCD PF07729.12 gi|20090253|ref|NP_616328.1| - 0.063 13.7 0.0 0.085 13.3 0.0 1.3 1 0 0 1 1 1 0 FCD domain CLTH PF10607.9 gi|20090253|ref|NP_616328.1| - 0.066 13.1 0.2 0.1 12.5 0.2 1.3 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain Aconitase PF00330.20 gi|20090254|ref|NP_616329.1| - 3.5e-93 313.1 0.1 3.5e-91 306.5 0.1 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|20090254|ref|NP_616329.1| - 0.086 11.5 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF521) CxxCxxCC PF03692.15 gi|20090255|ref|NP_616330.1| - 1.2e-12 48.4 6.8 4.6e-11 43.2 4.4 3.0 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|20090255|ref|NP_616330.1| - 0.049 13.4 9.3 0.56 10.0 0.3 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF3109) SRR1 PF07985.12 gi|20090255|ref|NP_616330.1| - 0.12 12.4 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 SRR1 NikR_C PF08753.11 gi|20090256|ref|NP_616331.1| - 2.6e-31 107.6 3.0 3.6e-31 107.1 3.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|20090256|ref|NP_616331.1| - 4e-08 32.9 0.0 8.2e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|20090256|ref|NP_616331.1| - 0.041 14.1 0.0 0.077 13.2 0.0 1.5 1 1 1 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|20090256|ref|NP_616331.1| - 0.077 13.1 0.0 0.28 11.3 0.0 1.8 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system ACT PF01842.25 gi|20090257|ref|NP_616332.1| - 6.6e-06 25.8 0.0 1.8e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 ACT domain Transketolase_C PF02780.20 gi|20090257|ref|NP_616332.1| - 0.02 14.8 0.2 0.27 11.1 0.1 2.1 1 1 1 2 2 2 0 Transketolase, C-terminal domain DUF2117 PF09890.9 gi|20090258|ref|NP_616333.1| - 4.2e-74 248.6 0.0 5.5e-74 248.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|20090258|ref|NP_616333.1| - 0.00097 18.4 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 ATP-NAD kinase RFX5_N PF18326.1 gi|20090259|ref|NP_616334.1| - 0.041 13.6 0.0 0.09 12.5 0.0 1.5 2 0 0 2 2 2 0 RFX5 N-terminal domain DUF2193 PF09959.9 gi|20090261|ref|NP_616336.1| - 4.1e-255 846.9 0.8 4.7e-255 846.7 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) PGF-CTERM PF18204.1 gi|20090262|ref|NP_616337.1| - 1e-08 34.8 0.6 1.9e-08 34.0 0.6 1.4 1 0 0 1 1 1 1 PGF-CTERM motif NT5C PF06941.12 gi|20090263|ref|NP_616338.1| - 4.9e-08 33.1 0.0 1.8e-06 27.9 0.0 2.1 1 1 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) HAD_SAK_2 PF18143.1 gi|20090263|ref|NP_616338.1| - 0.0071 16.7 0.0 0.01 16.1 0.0 1.3 1 1 0 1 1 1 1 HAD domain in Swiss Army Knife RNA repair proteins GDPD_2 PF13653.6 gi|20090263|ref|NP_616338.1| - 0.021 15.3 0.1 0.049 14.1 0.1 1.7 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family ABC_export PF16962.5 gi|20090264|ref|NP_616339.1| - 0.013 14.0 0.8 0.017 13.6 0.8 1.1 1 0 0 1 1 1 0 Putative ABC exporter PsbI PF02532.14 gi|20090264|ref|NP_616339.1| - 0.053 13.5 3.2 0.053 13.5 3.2 1.7 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) SNARE_assoc PF09335.11 gi|20090265|ref|NP_616340.1| - 4.1e-14 53.1 1.9 4.1e-14 53.1 1.9 2.0 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF1286 PF06939.11 gi|20090265|ref|NP_616340.1| - 0.0072 16.6 0.8 0.015 15.6 0.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1286) DUF3487 PF11990.8 gi|20090265|ref|NP_616340.1| - 0.021 14.7 1.9 0.036 13.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) ApoLp-III PF07464.11 gi|20090267|ref|NP_616342.1| - 0.00034 20.7 2.2 0.0015 18.6 2.3 1.8 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) DUF883 PF05957.13 gi|20090267|ref|NP_616342.1| - 0.0008 20.0 2.0 0.083 13.5 0.2 2.3 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF883) CdvA PF18822.1 gi|20090267|ref|NP_616342.1| - 0.0099 15.7 5.4 0.49 10.2 0.1 2.5 1 1 1 2 2 2 2 CdvA-like coiled-coil domain Syntaxin_2 PF14523.6 gi|20090267|ref|NP_616342.1| - 0.012 16.0 2.7 0.25 11.7 2.7 2.2 1 1 0 1 1 1 0 Syntaxin-like protein DUF948 PF06103.11 gi|20090267|ref|NP_616342.1| - 0.015 15.5 1.4 0.57 10.5 1.4 2.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.14 gi|20090267|ref|NP_616342.1| - 0.017 14.8 0.5 0.022 14.5 0.5 1.2 1 0 0 1 1 1 0 Laminin Domain I FlxA PF14282.6 gi|20090267|ref|NP_616342.1| - 0.022 14.7 0.9 0.29 11.1 0.1 2.1 1 1 1 2 2 2 0 FlxA-like protein CLZ PF16526.5 gi|20090267|ref|NP_616342.1| - 0.027 14.8 0.3 3 8.3 0.1 2.3 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1664 PF07889.12 gi|20090267|ref|NP_616342.1| - 0.035 14.1 2.3 0.068 13.2 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) REF PF05755.12 gi|20090267|ref|NP_616342.1| - 0.041 13.7 0.1 0.17 11.7 0.1 1.8 1 1 0 1 1 1 0 Rubber elongation factor protein (REF) YtxH PF12732.7 gi|20090267|ref|NP_616342.1| - 0.12 12.9 11.3 0.5 10.9 3.1 2.4 1 1 1 2 2 2 0 YtxH-like protein XhlA PF10779.9 gi|20090267|ref|NP_616342.1| - 0.45 10.8 5.1 1.2 9.3 0.2 2.5 2 0 0 2 2 2 0 Haemolysin XhlA DUF373 PF04123.13 gi|20090268|ref|NP_616343.1| - 3.1e-116 388.5 11.0 3.6e-116 388.3 11.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PNP_UDP_1 PF01048.20 gi|20090269|ref|NP_616344.1| - 9.9e-44 149.3 0.1 1.1e-43 149.1 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DEAD PF00270.29 gi|20090271|ref|NP_616346.1| - 1.1e-22 80.7 0.0 2.1e-22 79.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|20090271|ref|NP_616346.1| - 4e-16 59.3 0.0 1.1e-15 58.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|20090271|ref|NP_616346.1| - 2.2e-10 40.8 0.0 4.6e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|20090271|ref|NP_616346.1| - 0.013 14.3 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF3467 PF11950.8 gi|20090272|ref|NP_616347.1| - 2.3e-18 66.2 0.0 3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) PCP_red PF08369.10 gi|20090272|ref|NP_616347.1| - 0.044 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit LSM PF01423.22 gi|20090273|ref|NP_616348.1| - 1.8e-20 72.4 2.1 2e-20 72.2 2.1 1.0 1 0 0 1 1 1 1 LSM domain PhoH PF02562.16 gi|20090273|ref|NP_616348.1| - 0.017 14.6 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 PhoH-like protein B-block_TFIIIC PF04182.12 gi|20090274|ref|NP_616349.1| - 0.00017 21.7 0.1 0.00025 21.2 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|20090274|ref|NP_616349.1| - 0.0083 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20090274|ref|NP_616349.1| - 0.0094 15.5 0.2 0.022 14.3 0.1 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20090274|ref|NP_616349.1| - 0.019 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|20090274|ref|NP_616349.1| - 0.03 14.2 0.1 0.044 13.7 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_micro PF17007.5 gi|20090274|ref|NP_616349.1| - 0.045 12.6 0.4 0.056 12.2 0.4 1.1 1 0 0 1 1 1 0 HTH-like HEAT_2 PF13646.6 gi|20090276|ref|NP_616351.1| - 0.15 12.4 4.0 6.7 7.2 0.0 3.7 3 1 0 3 3 3 0 HEAT repeats TrpP PF17099.5 gi|20090277|ref|NP_616352.1| - 5.3e-07 29.6 22.6 7.6e-07 29.1 22.6 1.2 1 0 0 1 1 1 1 Tryptophan transporter TrpP ABC_tran PF00005.27 gi|20090278|ref|NP_616353.1| - 1.4e-57 194.1 0.8 1.2e-29 103.6 0.0 2.6 3 0 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 gi|20090278|ref|NP_616353.1| - 1.5e-17 64.4 4.5 1.3e-07 31.8 0.0 4.2 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090278|ref|NP_616353.1| - 3.3e-16 59.4 5.2 7.1e-08 32.1 0.3 3.1 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20090278|ref|NP_616353.1| - 1.7e-08 35.2 6.1 0.00096 19.7 0.2 3.0 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|20090278|ref|NP_616353.1| - 3.6e-08 33.8 4.9 0.0042 17.4 0.4 3.4 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20090278|ref|NP_616353.1| - 2.1e-07 31.5 4.4 0.015 15.7 0.8 3.2 2 2 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|20090278|ref|NP_616353.1| - 2.6e-07 30.3 0.2 0.013 15.2 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|20090278|ref|NP_616353.1| - 3e-07 30.6 2.3 0.055 13.7 0.1 3.8 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|20090278|ref|NP_616353.1| - 3.4e-07 30.2 1.9 0.67 9.7 0.1 4.2 4 0 0 4 4 4 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|20090278|ref|NP_616353.1| - 1.2e-05 25.1 1.7 0.22 11.3 0.1 4.1 4 0 0 4 4 4 1 AAA domain ATPase PF06745.13 gi|20090278|ref|NP_616353.1| - 2.9e-05 23.5 3.0 0.18 11.1 0.0 3.9 4 0 0 4 4 4 2 KaiC AAA_25 PF13481.6 gi|20090278|ref|NP_616353.1| - 5.3e-05 22.9 4.9 0.017 14.7 0.1 3.8 3 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|20090278|ref|NP_616353.1| - 6.4e-05 22.8 3.7 0.096 12.4 0.0 3.3 2 1 0 3 3 3 1 AAA ATPase domain TniB PF05621.11 gi|20090278|ref|NP_616353.1| - 0.00011 21.7 5.2 1.3 8.4 0.1 4.1 4 0 0 4 4 4 1 Bacterial TniB protein AAA_30 PF13604.6 gi|20090278|ref|NP_616353.1| - 0.0003 20.6 5.4 0.02 14.6 0.0 3.3 2 2 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|20090278|ref|NP_616353.1| - 0.00044 19.0 1.5 0.55 8.8 0.0 3.7 4 0 0 4 4 4 1 AAA domain NACHT PF05729.12 gi|20090278|ref|NP_616353.1| - 0.00046 20.2 0.1 0.015 15.2 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|20090278|ref|NP_616353.1| - 0.00057 20.3 5.1 0.66 10.4 0.0 4.2 3 1 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|20090278|ref|NP_616353.1| - 0.00061 19.8 0.4 0.45 10.5 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|20090278|ref|NP_616353.1| - 0.001 19.4 0.1 1.8 9.0 0.0 3.0 2 1 0 2 2 2 1 RNA helicase PRK PF00485.18 gi|20090278|ref|NP_616353.1| - 0.002 17.9 0.5 1.7 8.4 0.0 3.0 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family DLIC PF05783.11 gi|20090278|ref|NP_616353.1| - 0.002 17.0 0.3 0.26 10.1 0.0 2.3 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) RsgA_GTPase PF03193.16 gi|20090278|ref|NP_616353.1| - 0.0024 17.8 1.1 1.1 9.2 0.1 2.8 3 0 0 3 3 2 1 RsgA GTPase DnaB_C PF03796.15 gi|20090278|ref|NP_616353.1| - 0.0034 16.8 2.9 0.31 10.3 0.0 3.8 4 0 0 4 4 4 1 DnaB-like helicase C terminal domain Zot PF05707.12 gi|20090278|ref|NP_616353.1| - 0.0039 16.9 0.6 0.13 11.9 0.0 3.0 4 0 0 4 4 3 1 Zonular occludens toxin (Zot) ATPase_2 PF01637.18 gi|20090278|ref|NP_616353.1| - 0.0041 17.1 2.7 0.88 9.4 0.0 3.5 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|20090278|ref|NP_616353.1| - 0.0049 16.3 0.3 1.6 8.1 0.0 3.0 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|20090278|ref|NP_616353.1| - 0.0053 16.9 4.1 2 8.6 0.1 3.5 3 1 0 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|20090278|ref|NP_616353.1| - 0.0056 16.6 9.2 0.68 9.8 0.2 3.8 4 0 0 4 4 4 1 NTPase AAA_14 PF13173.6 gi|20090278|ref|NP_616353.1| - 0.0066 16.5 0.4 23 5.0 0.1 3.7 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|20090278|ref|NP_616353.1| - 0.007 16.3 0.0 0.33 10.9 0.0 2.8 3 0 0 3 3 2 1 Rad17 P-loop domain G-alpha PF00503.20 gi|20090278|ref|NP_616353.1| - 0.009 15.2 0.2 0.46 9.6 0.0 2.4 2 1 0 2 2 2 1 G-protein alpha subunit Roc PF08477.13 gi|20090278|ref|NP_616353.1| - 0.012 15.9 0.3 0.74 10.1 0.1 2.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_27 PF13514.6 gi|20090278|ref|NP_616353.1| - 0.02 14.5 0.4 6.6 6.3 0.0 2.6 3 0 0 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|20090278|ref|NP_616353.1| - 0.026 14.8 0.9 1.2 9.4 0.0 2.8 3 0 0 3 3 2 0 AAA domain PduV-EutP PF10662.9 gi|20090278|ref|NP_616353.1| - 0.026 14.3 0.6 2.6 7.8 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.12 gi|20090278|ref|NP_616353.1| - 0.031 13.5 0.4 7.2 5.8 0.1 2.7 3 0 0 3 3 2 0 Zeta toxin DUF87 PF01935.17 gi|20090278|ref|NP_616353.1| - 0.035 14.2 0.1 0.94 9.5 0.0 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain DUF4346 PF14251.6 gi|20090278|ref|NP_616353.1| - 0.04 14.0 0.1 0.1 12.6 0.1 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4346) AAA_5 PF07728.14 gi|20090278|ref|NP_616353.1| - 0.048 13.6 1.7 0.19 11.7 0.1 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|20090278|ref|NP_616353.1| - 0.051 14.1 5.0 7.1 7.2 0.0 3.9 3 1 0 3 3 3 0 AAA domain ABC_ATPase PF09818.9 gi|20090278|ref|NP_616353.1| - 0.054 12.3 10.0 1.2 7.8 0.4 3.9 4 1 0 4 4 4 0 Predicted ATPase of the ABC class APS_kinase PF01583.20 gi|20090278|ref|NP_616353.1| - 0.06 13.2 2.5 0.3 10.9 0.1 2.8 3 0 0 3 3 3 0 Adenylylsulphate kinase PhoH PF02562.16 gi|20090278|ref|NP_616353.1| - 0.061 12.8 4.5 4.6 6.6 0.2 3.7 4 0 0 4 4 4 0 PhoH-like protein MMR_HSR1 PF01926.23 gi|20090278|ref|NP_616353.1| - 0.1 12.7 3.1 11 6.2 0.1 3.0 2 2 0 2 2 2 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|20090278|ref|NP_616353.1| - 0.11 12.2 2.2 5.1 6.8 0.1 3.2 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|20090278|ref|NP_616353.1| - 0.19 11.1 0.8 20 4.5 0.0 2.6 3 0 0 3 3 2 0 Chromatin associated protein KTI12 MobB PF03205.14 gi|20090278|ref|NP_616353.1| - 0.43 10.5 6.1 2.9 7.8 0.1 3.3 4 0 0 4 4 3 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|20090278|ref|NP_616353.1| - 1.2 9.3 3.0 6 6.9 0.3 2.9 3 0 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain CbiQ PF02361.16 gi|20090279|ref|NP_616354.1| - 2.6e-31 109.0 10.8 3e-31 108.7 10.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein OCIA PF07051.11 gi|20090279|ref|NP_616354.1| - 0.046 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) DUF4179 PF13786.6 gi|20090279|ref|NP_616354.1| - 0.63 10.5 1.9 10 6.7 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) CARDB PF07705.11 gi|20090280|ref|NP_616355.1| - 6.6e-28 97.0 11.8 4.2e-26 91.2 0.5 3.9 3 1 0 3 3 3 2 CARDB Big_7 PF17957.1 gi|20090280|ref|NP_616355.1| - 0.056 14.2 0.2 0.056 14.2 0.2 2.9 4 0 0 4 4 4 0 Bacterial Ig domain T4BSS_DotI_IcmL PF11393.8 gi|20090280|ref|NP_616355.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Type-IV b secretion system, inner-membrane complex component SR-25 PF10500.9 gi|20090280|ref|NP_616355.1| - 1.8 8.1 4.8 3.4 7.2 4.8 1.4 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein DUF2769 PF10967.8 gi|20090281|ref|NP_616356.1| - 1.1e-10 42.0 13.7 1.1e-10 42.0 13.7 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) AMP-binding PF00501.28 gi|20090282|ref|NP_616357.1| - 8.6e-111 370.5 0.0 1e-110 370.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|20090282|ref|NP_616357.1| - 8.7e-18 65.1 0.1 1.8e-17 64.1 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT PF03061.22 gi|20090283|ref|NP_616358.1| - 1.2e-09 38.4 0.0 1.8e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|20090283|ref|NP_616358.1| - 9.9e-08 32.5 0.0 1.3e-07 32.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|20090283|ref|NP_616358.1| - 0.00068 19.0 0.0 0.041 13.2 0.0 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase LSPR PF06049.12 gi|20090283|ref|NP_616358.1| - 1.6 8.9 4.0 39 4.7 0.0 3.2 3 0 0 3 3 3 0 Coagulation Factor V LSPD Repeat Cupin_2 PF07883.11 gi|20090284|ref|NP_616359.1| - 1.1e-15 57.1 0.5 1.8e-15 56.4 0.5 1.2 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.22 gi|20090284|ref|NP_616359.1| - 7.2e-11 42.0 0.1 1e-10 41.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|20090284|ref|NP_616359.1| - 1.3e-10 41.4 0.2 2.2e-10 40.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|20090284|ref|NP_616359.1| - 6.1e-06 26.6 0.0 1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|20090284|ref|NP_616359.1| - 0.00047 20.1 0.0 0.0007 19.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|20090284|ref|NP_616359.1| - 0.0014 18.6 0.1 0.0024 17.8 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|20090284|ref|NP_616359.1| - 0.002 17.8 0.1 0.0034 17.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_25 PF13413.6 gi|20090284|ref|NP_616359.1| - 0.0028 17.5 0.7 0.0055 16.5 0.7 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain DUF3248 PF11609.8 gi|20090284|ref|NP_616359.1| - 0.057 13.3 0.4 8.3 6.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3248) DDE_Tnp_IS66 PF03050.14 gi|20090285|ref|NP_616360.1| - 2.7e-76 256.8 0.0 3.3e-76 256.5 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|20090285|ref|NP_616360.1| - 3.1e-10 40.3 4.9 9.6e-10 38.7 4.9 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|20090285|ref|NP_616360.1| - 2.7e-05 24.4 1.9 0.14 12.3 0.1 3.1 3 0 0 3 3 3 2 DDE domain DZR PF12773.7 gi|20090285|ref|NP_616360.1| - 0.012 15.6 1.4 0.07 13.2 0.9 2.5 2 0 0 2 2 2 0 Double zinc ribbon SlyX PF04102.12 gi|20090285|ref|NP_616360.1| - 0.013 16.1 2.9 3.5 8.3 1.1 2.7 2 0 0 2 2 2 0 SlyX Mut7-C PF01927.16 gi|20090285|ref|NP_616360.1| - 0.043 13.9 0.7 0.043 13.9 0.7 1.9 2 0 0 2 2 2 0 Mut7-C RNAse domain KapB PF08810.10 gi|20090285|ref|NP_616360.1| - 0.085 13.0 1.2 3.9 7.7 0.7 2.5 2 0 0 2 2 2 0 Kinase associated protein B zf-RING_7 PF02591.15 gi|20090285|ref|NP_616360.1| - 0.15 12.3 0.1 0.15 12.3 0.1 2.1 2 0 0 2 2 1 0 C4-type zinc ribbon domain GrpE PF01025.19 gi|20090285|ref|NP_616360.1| - 0.2 11.3 3.3 0.2 11.3 0.9 2.2 2 1 0 2 2 2 0 GrpE zinc_ribbon_2 PF13240.6 gi|20090285|ref|NP_616360.1| - 0.25 11.1 6.3 4.3 7.2 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|20090285|ref|NP_616360.1| - 0.37 10.8 6.3 2 8.5 0.0 3.0 2 1 0 2 2 2 0 zinc-RING finger domain Zn-ribbon_8 PF09723.10 gi|20090285|ref|NP_616360.1| - 0.44 10.7 5.7 12 6.1 5.8 3.0 1 1 1 2 2 2 0 Zinc ribbon domain Takusan PF04822.13 gi|20090285|ref|NP_616360.1| - 0.54 10.2 4.2 0.62 10.0 1.9 2.3 2 0 0 2 2 2 0 Takusan Lar_restr_allev PF14354.6 gi|20090285|ref|NP_616360.1| - 0.76 10.2 7.5 0.41 11.1 0.2 3.3 3 1 0 3 3 3 0 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|20090285|ref|NP_616360.1| - 2.3 8.9 5.1 17 6.2 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Fzo_mitofusin PF04799.13 gi|20090285|ref|NP_616360.1| - 3 7.3 5.1 2.3 7.7 0.5 2.6 3 0 0 3 3 3 0 fzo-like conserved region zinc_ribbon_15 PF17032.5 gi|20090285|ref|NP_616360.1| - 3.4 8.5 7.7 0.4 11.5 2.4 2.3 2 1 0 2 2 2 0 zinc-ribbon family DASH_Spc19 PF08287.11 gi|20090285|ref|NP_616360.1| - 4.3 7.2 9.7 2.2 8.2 0.1 2.2 2 0 0 2 2 2 0 Spc19 YhfH PF14149.6 gi|20090285|ref|NP_616360.1| - 5 7.2 7.9 25 4.9 0.1 3.5 3 0 0 3 3 3 0 YhfH-like protein Oxidored_FMN PF00724.20 gi|20090286|ref|NP_616361.1| - 1.1e-70 238.7 0.0 1.3e-70 238.4 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|20090286|ref|NP_616361.1| - 0.00035 19.8 0.0 0.00054 19.2 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|20090286|ref|NP_616361.1| - 0.0011 18.5 0.3 0.0022 17.5 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF1297 PF06973.12 gi|20090286|ref|NP_616361.1| - 0.1 12.1 0.1 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1297) OST_IS PF18246.1 gi|20090286|ref|NP_616361.1| - 0.13 12.5 0.2 0.83 10.0 0.0 2.1 2 0 0 2 2 2 0 Oligosaccharyltransferase Insert domain HMGL-like PF00682.19 gi|20090286|ref|NP_616361.1| - 0.17 11.4 0.0 0.34 10.4 0.0 1.5 1 0 0 1 1 1 0 HMGL-like Cytochrom_C_asm PF01578.20 gi|20090288|ref|NP_616363.1| - 1.9e-30 106.2 13.5 1.9e-30 106.2 13.5 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein BCHF PF07284.11 gi|20090288|ref|NP_616363.1| - 0.0055 16.7 4.9 0.0055 16.7 4.9 1.9 2 0 0 2 2 2 1 2-vinyl bacteriochlorophyllide hydratase (BCHF) DUF373 PF04123.13 gi|20090288|ref|NP_616363.1| - 3.8 6.9 6.9 9.4 5.6 3.4 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF373) CcmB PF03379.13 gi|20090289|ref|NP_616364.1| - 1.4e-31 109.7 16.6 1.6e-31 109.5 16.6 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 gi|20090289|ref|NP_616364.1| - 3.6e-14 52.7 14.3 3.6e-14 52.7 14.3 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20090289|ref|NP_616364.1| - 8.4e-09 35.0 16.3 8.4e-09 35.0 16.3 2.1 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20090289|ref|NP_616364.1| - 1.2e-08 34.6 17.4 8.3e-08 31.9 17.4 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20090289|ref|NP_616364.1| - 7.2e-06 26.1 14.5 3.3e-05 23.9 14.5 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ISK_Channel PF02060.15 gi|20090289|ref|NP_616364.1| - 3.5 7.4 5.6 0.7 9.6 1.1 2.0 2 0 0 2 2 2 0 Slow voltage-gated potassium channel ABC_tran PF00005.27 gi|20090290|ref|NP_616365.1| - 2.4e-33 115.5 0.0 3.2e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090290|ref|NP_616365.1| - 4.5e-11 43.1 3.4 2e-05 24.6 0.3 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|20090290|ref|NP_616365.1| - 2.9e-06 27.0 0.3 0.00036 20.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|20090290|ref|NP_616365.1| - 1.4e-05 25.7 1.3 2.9e-05 24.7 1.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090290|ref|NP_616365.1| - 0.00023 20.9 0.2 0.00038 20.1 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|20090290|ref|NP_616365.1| - 0.0005 20.0 0.0 0.00066 19.7 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|20090290|ref|NP_616365.1| - 0.00053 19.8 0.0 0.00068 19.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20090290|ref|NP_616365.1| - 0.00062 20.1 0.2 0.0025 18.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|20090290|ref|NP_616365.1| - 0.0011 17.7 0.0 0.0013 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|20090290|ref|NP_616365.1| - 0.0012 18.7 0.1 0.0026 17.5 0.1 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|20090290|ref|NP_616365.1| - 0.0019 18.6 0.1 0.0029 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|20090290|ref|NP_616365.1| - 0.0031 17.0 0.1 0.064 12.7 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|20090290|ref|NP_616365.1| - 0.006 16.5 0.1 0.0094 15.9 0.1 1.4 1 1 0 1 1 1 1 NTPase AAA_25 PF13481.6 gi|20090290|ref|NP_616365.1| - 0.0095 15.5 0.1 0.036 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|20090290|ref|NP_616365.1| - 0.012 15.6 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|20090290|ref|NP_616365.1| - 0.019 15.4 0.1 0.077 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|20090290|ref|NP_616365.1| - 0.028 14.3 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|20090290|ref|NP_616365.1| - 0.034 13.3 0.0 0.093 11.9 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|20090290|ref|NP_616365.1| - 0.05 13.5 0.6 0.17 11.8 0.6 2.1 1 1 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|20090290|ref|NP_616365.1| - 0.061 12.7 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|20090290|ref|NP_616365.1| - 0.064 13.2 0.0 0.1 12.6 0.0 1.4 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|20090290|ref|NP_616365.1| - 0.074 12.6 0.0 0.16 11.6 0.0 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|20090290|ref|NP_616365.1| - 0.078 13.5 0.2 0.23 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|20090290|ref|NP_616365.1| - 0.11 12.7 0.1 0.25 11.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|20090290|ref|NP_616365.1| - 0.11 11.2 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF3584 PF12128.8 gi|20090290|ref|NP_616365.1| - 0.13 9.7 0.0 0.22 9.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_14 PF13173.6 gi|20090290|ref|NP_616365.1| - 0.14 12.2 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090290|ref|NP_616365.1| - 0.14 11.9 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain PMSR PF01625.21 gi|20090291|ref|NP_616366.1| - 4.7e-67 224.9 1.1 6.1e-67 224.6 1.1 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PBP PF01161.20 gi|20090292|ref|NP_616367.1| - 1.5e-34 119.2 0.0 1.9e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ETRAMP PF09716.10 gi|20090292|ref|NP_616367.1| - 0.0079 16.2 0.0 0.012 15.6 0.0 1.4 1 1 0 1 1 1 1 Malarial early transcribed membrane protein (ETRAMP) GRP PF07172.11 gi|20090292|ref|NP_616367.1| - 0.083 13.6 0.0 0.13 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycine rich protein family DUF362 PF04015.12 gi|20090293|ref|NP_616368.1| - 1e-35 123.9 0.0 1.3e-35 123.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) rve PF00665.26 gi|20090294|ref|NP_616369.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090294|ref|NP_616369.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20090294|ref|NP_616369.1| - 7.5e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20090294|ref|NP_616369.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20090294|ref|NP_616369.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090294|ref|NP_616369.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20090294|ref|NP_616369.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20090294|ref|NP_616369.1| - 0.11 12.2 0.5 0.5 10.1 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment TrkA_C PF02080.21 gi|20090295|ref|NP_616370.1| - 1.3e-26 92.2 0.1 1.2e-12 47.5 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|20090295|ref|NP_616370.1| - 1.6e-19 70.1 14.5 4.8e-11 43.0 6.1 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|20090295|ref|NP_616370.1| - 0.0021 17.4 6.5 0.2 11.0 0.9 2.3 2 0 0 2 2 2 2 Protein of unknown function DUF47 DUF4363 PF14276.6 gi|20090295|ref|NP_616370.1| - 0.073 13.2 2.0 0.1 12.8 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) MgtE PF01769.16 gi|20090296|ref|NP_616371.1| - 1e-18 67.9 10.6 1e-18 67.9 10.6 1.7 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|20090297|ref|NP_616372.1| - 2e-20 73.4 9.6 2e-20 73.4 9.6 1.8 2 0 0 2 2 2 1 Divalent cation transporter CRCB PF02537.15 gi|20090297|ref|NP_616372.1| - 0.15 12.4 8.9 0.35 11.2 8.8 1.8 1 1 0 1 1 1 0 CrcB-like protein, Camphor Resistance (CrcB) DUF4118 PF13493.6 gi|20090297|ref|NP_616372.1| - 3.8 7.4 17.2 1.2 9.0 13.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) NUDIX PF00293.28 gi|20090298|ref|NP_616373.1| - 1.6e-22 79.9 0.0 4.5e-22 78.5 0.0 1.7 2 0 0 2 2 2 1 NUDIX domain zf-NADH-PPase PF09297.11 gi|20090298|ref|NP_616373.1| - 3.4e-13 49.0 3.6 5.3e-13 48.4 3.6 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.11 gi|20090298|ref|NP_616373.1| - 2.1e-08 34.7 0.0 3.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DZR PF12773.7 gi|20090298|ref|NP_616373.1| - 0.00051 20.0 0.5 0.00091 19.2 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|20090298|ref|NP_616373.1| - 0.001 18.9 1.3 0.0018 18.1 1.3 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|20090298|ref|NP_616373.1| - 0.0052 16.9 1.0 0.016 15.3 0.2 2.0 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|20090298|ref|NP_616373.1| - 0.022 14.2 1.6 2.7 7.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|20090298|ref|NP_616373.1| - 0.043 13.6 3.6 0.33 10.7 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|20090298|ref|NP_616373.1| - 0.073 13.1 0.5 0.13 12.3 0.5 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|20090298|ref|NP_616373.1| - 0.1 12.5 2.4 0.43 10.5 0.2 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|20090298|ref|NP_616373.1| - 0.12 12.4 3.4 0.87 9.6 3.4 2.1 1 1 0 1 1 1 0 Nudix N-terminal Auto_anti-p27 PF06677.12 gi|20090298|ref|NP_616373.1| - 0.16 12.1 1.2 0.28 11.4 1.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C3HC4 PF00097.25 gi|20090298|ref|NP_616373.1| - 0.34 10.8 1.6 0.6 10.0 1.6 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.6 gi|20090298|ref|NP_616373.1| - 0.36 10.8 1.8 0.63 10.1 1.8 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Zn-ribbon_8 PF09723.10 gi|20090298|ref|NP_616373.1| - 1.7 8.8 3.9 17 5.6 4.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|20090298|ref|NP_616373.1| - 6 6.6 8.8 4 7.2 0.2 2.8 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MTS PF05175.14 gi|20090299|ref|NP_616374.1| - 1.2e-10 41.2 0.0 1.6e-07 31.1 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|20090299|ref|NP_616374.1| - 8.3e-07 29.7 0.0 1.7e-05 25.4 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090299|ref|NP_616374.1| - 1.7e-06 27.9 0.0 2.4e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090299|ref|NP_616374.1| - 2.2e-06 28.3 0.0 0.00015 22.4 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090299|ref|NP_616374.1| - 4.2e-06 27.3 0.0 3.8e-05 24.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090299|ref|NP_616374.1| - 6.4e-06 26.1 0.0 0.00014 21.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20090299|ref|NP_616374.1| - 2.9e-05 23.9 0.0 0.0001 22.1 0.0 1.8 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|20090299|ref|NP_616374.1| - 0.00013 21.6 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|20090299|ref|NP_616374.1| - 0.0016 17.9 0.0 0.018 14.5 0.0 2.0 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.12 gi|20090299|ref|NP_616374.1| - 0.0032 16.6 0.0 0.0043 16.2 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase FtsJ PF01728.19 gi|20090299|ref|NP_616374.1| - 0.007 16.5 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.20 gi|20090299|ref|NP_616374.1| - 0.0084 15.4 0.0 0.99 8.6 0.0 2.1 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|20090299|ref|NP_616374.1| - 0.0088 17.1 0.0 0.074 14.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|20090299|ref|NP_616374.1| - 0.013 15.3 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DUF1269 PF06897.12 gi|20090299|ref|NP_616374.1| - 0.019 15.3 0.0 0.063 13.6 0.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1269) Methyltransf_8 PF05148.15 gi|20090299|ref|NP_616374.1| - 0.026 14.4 0.3 0.077 12.8 0.2 1.7 2 0 0 2 2 2 0 Hypothetical methyltransferase Cons_hypoth95 PF03602.15 gi|20090299|ref|NP_616374.1| - 0.039 13.6 0.0 0.097 12.3 0.0 1.6 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|20090299|ref|NP_616374.1| - 0.042 13.6 0.0 0.067 12.9 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_32 PF13679.6 gi|20090299|ref|NP_616374.1| - 0.053 13.5 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|20090299|ref|NP_616374.1| - 0.097 11.8 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase GCD14 PF08704.10 gi|20090299|ref|NP_616374.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit PH_17 PF18012.1 gi|20090299|ref|NP_616374.1| - 0.2 11.4 0.0 0.35 10.6 0.0 1.3 1 0 0 1 1 1 0 PH domain RrnaAD PF00398.20 gi|20090300|ref|NP_616375.1| - 9.9e-60 201.8 0.0 1.2e-59 201.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|20090300|ref|NP_616375.1| - 6e-10 39.7 0.0 1.1e-09 38.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090300|ref|NP_616375.1| - 1.6e-07 31.8 0.0 3.4e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|20090300|ref|NP_616375.1| - 1.5e-05 24.9 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|20090300|ref|NP_616375.1| - 7.4e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|20090300|ref|NP_616375.1| - 0.0007 19.3 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|20090300|ref|NP_616375.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|20090300|ref|NP_616375.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|20090300|ref|NP_616375.1| - 0.0017 19.1 0.0 0.0057 17.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090300|ref|NP_616375.1| - 0.0028 17.5 0.0 0.003 17.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20090300|ref|NP_616375.1| - 0.0042 16.4 0.0 0.0065 15.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|20090300|ref|NP_616375.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase PCMT PF01135.19 gi|20090300|ref|NP_616375.1| - 0.013 15.2 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|20090300|ref|NP_616375.1| - 0.015 14.9 0.1 0.03 14.0 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 gi|20090300|ref|NP_616375.1| - 0.028 14.4 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|20090300|ref|NP_616375.1| - 0.032 13.2 0.0 0.05 12.6 0.0 1.5 1 1 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_2 PF00891.18 gi|20090300|ref|NP_616375.1| - 0.068 12.5 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Spermine_synth PF01564.17 gi|20090300|ref|NP_616375.1| - 0.16 11.3 0.1 0.28 10.6 0.1 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain DUF655 PF04919.12 gi|20090301|ref|NP_616376.1| - 6.2e-67 225.0 0.1 7.1e-67 224.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|20090301|ref|NP_616376.1| - 0.00098 19.3 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|20090301|ref|NP_616376.1| - 0.0059 16.8 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|20090303|ref|NP_616378.1| - 3.5e-11 43.5 1.7 6e-11 42.8 1.7 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb4 FumaraseC_C PF10415.9 gi|20090303|ref|NP_616378.1| - 0.13 12.7 2.8 0.97 9.9 0.0 2.9 2 1 1 3 3 3 0 Fumarase C C-terminus FliG_M PF14841.6 gi|20090303|ref|NP_616378.1| - 0.16 12.2 2.1 0.36 11.1 0.5 2.3 1 1 2 3 3 3 0 FliG middle domain Ribosomal_L21e PF01157.18 gi|20090305|ref|NP_616380.1| - 2e-34 117.4 0.6 2.2e-34 117.3 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|20090306|ref|NP_616381.1| - 1.4e-11 44.6 0.2 4.4e-11 43.1 0.0 1.9 2 0 0 2 2 2 1 THUMP domain DUF2703 PF10865.8 gi|20090306|ref|NP_616381.1| - 0.069 13.3 0.1 0.63 10.2 0.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2703) Methyltrn_RNA_2 PF04013.12 gi|20090307|ref|NP_616382.1| - 1.6e-62 210.8 0.0 1.8e-62 210.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Metallophos_2 PF12850.7 gi|20090308|ref|NP_616383.1| - 3.1e-21 76.3 0.0 5e-21 75.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|20090308|ref|NP_616383.1| - 4.1e-18 66.6 0.0 7.2e-18 65.8 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|20090308|ref|NP_616383.1| - 1.4e-13 50.7 0.4 3.9e-09 36.2 0.1 2.6 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF4010 PF13194.6 gi|20090309|ref|NP_616384.1| - 7e-50 169.6 16.3 7e-50 169.6 16.3 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|20090309|ref|NP_616384.1| - 1.3e-16 61.1 7.6 1.3e-16 61.1 7.6 3.8 2 1 2 4 4 4 1 MgtC family Cupredoxin_1 PF13473.6 gi|20090311|ref|NP_616386.1| - 7e-06 26.1 0.0 7.9e-06 25.9 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|20090311|ref|NP_616386.1| - 0.0007 20.0 0.1 0.019 15.4 0.1 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|20090313|ref|NP_616388.1| - 2.7e-05 24.2 1.6 2.7e-05 24.2 0.1 1.9 2 0 0 2 2 2 1 Cupredoxin-like domain SpoIIIAH PF12685.7 gi|20090313|ref|NP_616388.1| - 0.001 18.9 0.1 0.0013 18.6 0.1 1.3 1 0 0 1 1 1 1 SpoIIIAH-like protein Copper-bind PF00127.20 gi|20090313|ref|NP_616388.1| - 0.031 14.7 0.2 0.89 10.0 0.1 2.6 1 1 1 2 2 2 0 Copper binding proteins, plastocyanin/azurin family Mucin PF01456.17 gi|20090313|ref|NP_616388.1| - 0.075 13.0 4.2 0.049 13.6 2.6 1.4 1 1 0 1 1 1 0 Mucin-like glycoprotein TRM PF02005.16 gi|20090314|ref|NP_616389.1| - 6.3e-104 348.1 0.0 7.7e-104 347.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|20090314|ref|NP_616389.1| - 0.0012 18.6 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|20090314|ref|NP_616389.1| - 0.0034 17.1 0.0 0.0062 16.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF2067 PF09840.9 gi|20090314|ref|NP_616389.1| - 0.023 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) zf-ribbon_3 PF13248.6 gi|20090314|ref|NP_616389.1| - 0.062 12.7 6.7 0.57 9.7 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|20090314|ref|NP_616389.1| - 0.14 12.2 1.5 0.25 11.4 0.2 2.1 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|20090314|ref|NP_616389.1| - 2.3 8.1 8.1 5 7.0 0.9 3.3 3 0 0 3 3 3 0 zinc-ribbon domain HTH_27 PF13463.6 gi|20090315|ref|NP_616390.1| - 0.0028 18.1 0.0 0.0091 16.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|20090315|ref|NP_616390.1| - 0.003 17.5 0.0 0.0076 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_ner PF04546.13 gi|20090315|ref|NP_616390.1| - 0.016 15.1 6.7 0.033 14.1 6.5 1.7 1 1 0 1 1 1 0 Sigma-70, non-essential region HTH_Crp_2 PF13545.6 gi|20090315|ref|NP_616390.1| - 0.022 14.7 0.0 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TetR_C_24 PF17932.1 gi|20090315|ref|NP_616390.1| - 0.031 14.5 0.1 0.12 12.6 0.1 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF2250 PF10007.9 gi|20090315|ref|NP_616390.1| - 0.042 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1664 PF07889.12 gi|20090315|ref|NP_616390.1| - 0.049 13.7 1.3 0.12 12.4 1.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Ribosomal_L6e PF01159.19 gi|20090315|ref|NP_616390.1| - 0.076 13.5 3.0 0.14 12.7 0.4 2.1 1 1 1 2 2 2 0 Ribosomal protein L6e DUF4364 PF14277.6 gi|20090315|ref|NP_616390.1| - 0.11 12.3 0.4 0.22 11.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) TMEM247 PF15444.6 gi|20090315|ref|NP_616390.1| - 0.11 12.5 2.7 0.14 12.2 2.7 1.3 1 0 0 1 1 1 0 Transmembrane protein 247 DUF1192 PF06698.11 gi|20090315|ref|NP_616390.1| - 0.18 11.9 1.9 0.43 10.7 1.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) HEPN_AbiU2 PF18734.1 gi|20090315|ref|NP_616390.1| - 0.52 9.8 3.6 3.8 7.0 3.6 2.4 1 1 0 1 1 1 0 AbiU2 DUF2110 PF09883.9 gi|20090316|ref|NP_616391.1| - 1.6e-89 299.3 0.2 1.9e-89 299.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) V4R PF02830.18 gi|20090317|ref|NP_616392.1| - 3.3e-19 68.6 0.8 6.4e-19 67.7 0.3 1.8 2 0 0 2 2 2 1 V4R domain HTH_5 PF01022.20 gi|20090317|ref|NP_616392.1| - 3.9e-11 42.6 0.0 6.8e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20090317|ref|NP_616392.1| - 1.4e-06 28.1 0.0 2.4e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20090317|ref|NP_616392.1| - 4.9e-06 26.9 0.0 8.2e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|20090317|ref|NP_616392.1| - 5.1e-05 23.3 0.0 0.00013 21.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|20090317|ref|NP_616392.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|20090317|ref|NP_616392.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|20090317|ref|NP_616392.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|20090317|ref|NP_616392.1| - 0.048 13.8 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2744 PF10910.8 gi|20090318|ref|NP_616393.1| - 0.42 10.6 5.8 27 4.7 0.0 4.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2744) PspA_IM30 PF04012.12 gi|20090319|ref|NP_616394.1| - 2.2e-27 96.1 34.5 2.5e-27 95.9 34.5 1.0 1 0 0 1 1 1 1 PspA/IM30 family NOG1 PF06858.14 gi|20090319|ref|NP_616394.1| - 0.0029 17.3 0.7 0.026 14.3 0.0 2.7 2 1 1 3 3 3 1 Nucleolar GTP-binding protein 1 (NOG1) Osmo_CC PF08946.10 gi|20090319|ref|NP_616394.1| - 0.026 14.7 1.6 0.026 14.7 1.6 4.3 4 0 0 4 4 4 0 Osmosensory transporter coiled coil DUF1910 PF08928.10 gi|20090319|ref|NP_616394.1| - 0.062 13.3 5.7 0.024 14.6 1.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) Flagellin_C PF00700.21 gi|20090319|ref|NP_616394.1| - 0.097 13.0 11.7 0.17 12.3 0.4 3.3 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region Sec34 PF04136.15 gi|20090319|ref|NP_616394.1| - 0.33 10.8 13.4 1.2 9.0 1.4 3.3 2 1 1 3 3 3 0 Sec34-like family DUF1664 PF07889.12 gi|20090319|ref|NP_616394.1| - 1.3 9.0 17.5 1.7 8.7 3.9 3.4 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|20090319|ref|NP_616394.1| - 3.6 8.1 10.9 3.8 8.0 0.5 3.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF5082 PF16888.5 gi|20090319|ref|NP_616394.1| - 7.9 6.8 23.0 0.15 12.3 10.5 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) HlyD_2 PF12700.7 gi|20090320|ref|NP_616395.1| - 0.05 12.3 0.1 0.05 12.3 0.1 1.0 1 0 0 1 1 1 0 HlyD family secretion protein Usp PF00582.26 gi|20090321|ref|NP_616396.1| - 1.4e-35 122.9 0.1 1.5e-35 122.7 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family HisKA_2 PF07568.12 gi|20090322|ref|NP_616397.1| - 9.6e-32 108.9 1.8 3.1e-31 107.3 1.8 2.0 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|20090322|ref|NP_616397.1| - 3.1e-18 65.8 0.3 8.2e-18 64.5 0.3 1.7 1 0 0 1 1 1 1 PAS fold HWE_HK PF07536.14 gi|20090322|ref|NP_616397.1| - 5.7e-06 27.0 0.1 2e-05 25.2 0.1 1.9 2 0 0 2 2 2 1 HWE histidine kinase PAS PF00989.25 gi|20090322|ref|NP_616397.1| - 4.9e-05 23.3 0.7 0.00084 19.3 0.1 2.8 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|20090322|ref|NP_616397.1| - 0.00044 20.7 0.0 0.004 17.7 0.0 2.5 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|20090322|ref|NP_616397.1| - 0.001 19.3 0.0 0.24 11.7 0.0 2.7 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|20090322|ref|NP_616397.1| - 0.0017 18.5 0.4 0.77 10.0 0.1 2.9 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|20090322|ref|NP_616397.1| - 0.002 18.1 0.1 0.0079 16.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|20090322|ref|NP_616397.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 PAS domain ChapFlgA PF13144.6 gi|20090323|ref|NP_616398.1| - 0.0016 18.5 0.0 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Chaperone for flagella basal body P-ring formation Pput2613-deam PF14427.6 gi|20090323|ref|NP_616398.1| - 0.16 11.9 1.3 0.31 11.0 0.9 1.8 1 1 1 2 2 2 0 Pput_2613-like deaminase ThiI PF02568.14 gi|20090325|ref|NP_616400.1| - 6.5e-52 176.0 0.0 8.7e-52 175.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|20090325|ref|NP_616400.1| - 3.4e-17 62.9 0.0 1.7e-16 60.6 0.0 2.1 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|20090325|ref|NP_616400.1| - 0.00019 21.0 0.0 0.066 12.7 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|20090325|ref|NP_616400.1| - 0.0004 19.3 0.0 0.001 18.0 0.0 1.7 2 0 0 2 2 2 1 tRNA methyl transferase Response_reg PF00072.24 gi|20090327|ref|NP_616402.1| - 5.4e-20 71.6 0.1 6.6e-20 71.4 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|20090328|ref|NP_616403.1| - 1.4e-23 83.1 0.2 1.7e-23 82.9 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|20090329|ref|NP_616404.1| - 3.6e-97 318.9 17.0 5e-26 90.8 0.7 5.5 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|20090329|ref|NP_616404.1| - 4.7e-34 116.8 1.4 1.6e-05 25.1 0.0 6.8 6 0 0 6 6 6 5 PAS domain HisKA_2 PF07568.12 gi|20090329|ref|NP_616404.1| - 8.3e-32 109.1 3.8 8.3e-32 109.1 3.8 4.2 5 0 0 5 5 3 1 Histidine kinase PAS PF00989.25 gi|20090329|ref|NP_616404.1| - 1.7e-28 98.9 1.8 1.1e-05 25.3 0.0 7.1 6 2 0 6 6 6 6 PAS fold PAS_4 PF08448.10 gi|20090329|ref|NP_616404.1| - 2.2e-19 69.8 0.3 5.1e-10 39.6 0.0 6.1 6 1 0 6 6 6 2 PAS fold PAS_11 PF14598.6 gi|20090329|ref|NP_616404.1| - 5e-13 49.2 0.2 0.013 15.6 0.0 4.6 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|20090329|ref|NP_616404.1| - 7.7e-09 36.0 0.1 9.3e-08 32.6 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20090329|ref|NP_616404.1| - 3e-06 27.1 0.0 0.3 11.1 0.0 5.2 5 0 0 5 5 5 1 PAS domain HWE_HK PF07536.14 gi|20090329|ref|NP_616404.1| - 0.00019 22.1 0.5 0.00058 20.5 0.5 1.9 1 0 0 1 1 1 1 HWE histidine kinase Methyltransf_11 PF08241.12 gi|20090329|ref|NP_616404.1| - 0.0034 18.0 0.0 20 5.9 0.0 4.4 4 0 0 4 4 3 0 Methyltransferase domain CelD_N PF02927.14 gi|20090329|ref|NP_616404.1| - 0.0056 17.5 0.5 6 7.8 0.1 3.7 4 0 0 4 4 3 1 Cellulase N-terminal ig-like domain ZNRF_3_ecto PF18212.1 gi|20090329|ref|NP_616404.1| - 0.012 15.6 0.1 33 4.5 0.0 4.4 4 0 0 4 4 4 0 ZNRF-3 Ectodomain dCache_1 PF02743.18 gi|20090329|ref|NP_616404.1| - 0.025 14.4 0.0 0.19 11.5 0.0 2.5 3 0 0 3 3 3 0 Cache domain YcgL PF05166.13 gi|20090329|ref|NP_616404.1| - 0.048 14.0 0.2 8.6 6.8 0.0 3.4 3 0 0 3 3 3 0 YcgL domain NAC PF01849.18 gi|20090329|ref|NP_616404.1| - 0.068 13.1 0.0 7.1 6.7 0.0 2.9 3 0 0 3 3 3 0 NAC domain Nit_Regul_Hom PF10126.9 gi|20090329|ref|NP_616404.1| - 0.092 12.8 0.0 2.5 8.2 0.0 2.8 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII HAS-barrel PF09378.10 gi|20090329|ref|NP_616404.1| - 0.18 12.0 4.2 1.7 8.8 0.2 3.7 3 0 0 3 3 3 0 HAS barrel domain EF1_GNE PF00736.19 gi|20090330|ref|NP_616405.1| - 1.3e-20 73.3 0.7 1.4e-20 73.2 0.7 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|20090331|ref|NP_616406.1| - 3.3e-11 42.9 15.0 1.1e-10 41.3 2.1 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|20090331|ref|NP_616406.1| - 0.00063 19.4 18.0 0.004 16.8 4.3 3.3 2 2 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|20090331|ref|NP_616406.1| - 0.0012 18.9 12.1 0.24 11.5 12.1 2.5 1 1 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|20090331|ref|NP_616406.1| - 0.0013 18.3 5.3 0.45 10.2 0.1 3.1 3 0 0 3 3 3 2 Ubiquitin-Binding Zinc Finger zf-tcix PF14952.6 gi|20090331|ref|NP_616406.1| - 0.0015 18.1 13.7 0.054 13.1 2.9 3.1 3 0 0 3 3 3 2 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|20090331|ref|NP_616406.1| - 0.0029 17.5 4.0 0.0029 17.5 4.0 2.1 1 1 1 2 2 2 1 Putative transposase DNA-binding domain tRNA-synt_1g PF09334.11 gi|20090331|ref|NP_616406.1| - 0.0071 15.1 3.3 0.0079 15.0 3.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) zf-ribbon_3 PF13248.6 gi|20090331|ref|NP_616406.1| - 0.0084 15.5 14.9 1.1 8.7 0.6 3.4 3 1 0 3 3 3 2 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|20090331|ref|NP_616406.1| - 0.013 15.0 8.0 0.063 12.8 1.3 2.5 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF2039 PF10217.9 gi|20090331|ref|NP_616406.1| - 0.033 14.5 3.9 0.033 14.5 3.9 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) zf-C4_Topoisom PF01396.19 gi|20090331|ref|NP_616406.1| - 0.035 13.9 11.0 3.6 7.4 0.2 3.4 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.19 gi|20090331|ref|NP_616406.1| - 0.037 14.0 10.5 0.083 12.9 0.7 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|20090331|ref|NP_616406.1| - 0.038 14.0 9.0 0.068 13.2 9.0 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-RING_7 PF02591.15 gi|20090331|ref|NP_616406.1| - 0.046 13.9 11.8 4.3 7.6 3.1 3.3 3 1 0 3 3 3 0 C4-type zinc ribbon domain zf-C2HC5 PF06221.13 gi|20090331|ref|NP_616406.1| - 0.057 13.4 9.5 0.088 12.8 1.1 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Auto_anti-p27 PF06677.12 gi|20090331|ref|NP_616406.1| - 0.086 13.0 2.8 0.086 13.0 2.8 2.7 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) C1_2 PF03107.16 gi|20090331|ref|NP_616406.1| - 0.089 13.1 10.7 0.17 12.2 5.5 2.2 1 1 1 2 2 2 0 C1 domain Rhodanese_C PF12368.8 gi|20090331|ref|NP_616406.1| - 0.11 12.9 7.2 0.12 12.7 7.2 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal zinc-ribbons_6 PF07191.12 gi|20090331|ref|NP_616406.1| - 0.11 12.5 9.2 0.81 9.7 9.0 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-Mss51 PF13824.6 gi|20090331|ref|NP_616406.1| - 0.12 12.4 12.1 0.65 10.1 3.7 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|20090331|ref|NP_616406.1| - 0.14 12.0 14.6 0.24 11.3 4.6 3.0 2 1 0 2 2 2 0 HIT zinc finger zf-C3HC4_4 PF15227.6 gi|20090331|ref|NP_616406.1| - 0.15 12.3 9.6 0.26 11.5 1.1 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING zf-TFIIB PF13453.6 gi|20090331|ref|NP_616406.1| - 0.16 11.3 12.4 2.4 7.6 8.8 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger NRDD PF13597.6 gi|20090331|ref|NP_616406.1| - 0.18 10.5 11.7 0.44 9.3 1.1 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-CHY PF05495.12 gi|20090331|ref|NP_616406.1| - 0.18 12.3 11.0 0.65 10.5 6.2 2.1 1 1 1 2 2 2 0 CHY zinc finger Nudix_N_2 PF14803.6 gi|20090331|ref|NP_616406.1| - 0.38 10.7 13.7 4.7 7.2 0.1 3.2 2 1 0 2 2 2 0 Nudix N-terminal zf-RRN7 PF11781.8 gi|20090331|ref|NP_616406.1| - 0.5 10.1 0.3 0.5 10.1 0.3 3.4 4 0 0 4 4 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|20090331|ref|NP_616406.1| - 0.53 10.1 15.1 2.8 7.7 0.1 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-C3HC4 PF00097.25 gi|20090331|ref|NP_616406.1| - 0.54 10.2 12.5 0.25 11.3 1.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.13 gi|20090331|ref|NP_616406.1| - 0.67 7.7 5.8 0.69 7.7 5.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.10 gi|20090331|ref|NP_616406.1| - 0.75 10.0 14.7 7.5 6.8 4.9 3.0 1 1 2 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|20090331|ref|NP_616406.1| - 1.1 9.0 13.0 2.8 7.7 0.2 3.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ACC PF17848.1 gi|20090331|ref|NP_616406.1| - 1.2 9.3 16.7 11 6.2 0.2 3.9 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_SprT PF17283.2 gi|20090331|ref|NP_616406.1| - 1.5 8.8 16.3 27 4.8 0.2 3.7 2 1 0 2 2 2 0 SprT-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|20090331|ref|NP_616406.1| - 1.8 8.7 10.3 4.1 7.5 0.6 3.2 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain CpXC PF14353.6 gi|20090331|ref|NP_616406.1| - 2 8.5 10.2 4.1 7.5 0.7 2.6 1 1 2 3 3 3 0 CpXC protein zinc_ribbon_10 PF10058.9 gi|20090331|ref|NP_616406.1| - 2 8.2 15.0 4.1 7.2 2.7 3.5 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein C1_1 PF00130.22 gi|20090331|ref|NP_616406.1| - 2.2 8.2 9.9 78 3.3 9.9 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-HYPF PF07503.12 gi|20090331|ref|NP_616406.1| - 2.3 8.0 13.2 5.7 6.8 0.1 3.0 2 1 0 2 2 2 0 HypF finger NMD3 PF04981.13 gi|20090331|ref|NP_616406.1| - 2.5 7.5 9.6 3.3 7.1 9.6 1.1 1 0 0 1 1 1 0 NMD3 family YhfH PF14149.6 gi|20090331|ref|NP_616406.1| - 3.7 7.6 12.6 23 5.1 0.1 3.3 3 1 0 3 3 3 0 YhfH-like protein AA_kinase PF00696.28 gi|20090332|ref|NP_616407.1| - 1.2e-09 38.1 0.0 0.0015 18.2 0.0 2.1 1 1 1 2 2 2 2 Amino acid kinase family Hydantoinase_A PF01968.18 gi|20090333|ref|NP_616408.1| - 1.5e-42 145.8 0.1 2.8e-41 141.7 0.3 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|20090333|ref|NP_616408.1| - 0.0013 17.4 0.0 0.029 13.0 0.0 2.2 2 0 0 2 2 2 2 MutL protein EIF_2_alpha PF07541.12 gi|20090333|ref|NP_616408.1| - 0.081 13.0 0.1 0.2 11.8 0.0 1.6 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit ATP-grasp_3 PF02655.14 gi|20090334|ref|NP_616409.1| - 1.8e-51 174.4 0.0 2.7e-51 173.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|20090334|ref|NP_616409.1| - 2e-05 24.8 0.0 4.3e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 pre ATP-grasp 3 domain ATPgrasp_ST PF14397.6 gi|20090334|ref|NP_616409.1| - 0.0024 17.2 0.0 0.08 12.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp DUF5476 PF17570.2 gi|20090334|ref|NP_616409.1| - 0.065 13.6 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5476) DoxX_3 PF13781.6 gi|20090335|ref|NP_616410.1| - 0.015 15.9 2.2 0.016 15.8 0.1 1.8 1 1 0 2 2 2 0 DoxX-like family ABC2_membrane_4 PF12730.7 gi|20090335|ref|NP_616410.1| - 1.2 9.1 9.9 1 9.3 2.5 2.3 2 1 0 2 2 2 0 ABC-2 family transporter protein TrbC PF04956.13 gi|20090335|ref|NP_616410.1| - 1.2 9.4 13.0 0.87 9.8 2.3 3.1 2 1 1 3 3 3 0 TrbC/VIRB2 family GrpE PF01025.19 gi|20090336|ref|NP_616411.1| - 5.2e-45 153.1 3.8 6.7e-45 152.7 3.8 1.2 1 1 0 1 1 1 1 GrpE DUF2605 PF10792.9 gi|20090336|ref|NP_616411.1| - 0.11 12.4 0.6 0.18 11.8 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) HSP70 PF00012.20 gi|20090337|ref|NP_616412.1| - 1.3e-252 839.4 13.5 1.7e-250 832.4 13.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|20090337|ref|NP_616412.1| - 1.4e-16 60.3 1.6 1.4e-16 60.3 1.6 2.4 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 gi|20090337|ref|NP_616412.1| - 7.1e-05 22.6 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 gi|20090337|ref|NP_616412.1| - 0.0005 20.5 5.7 0.74 10.3 0.1 3.7 3 2 0 3 3 3 2 Cell division protein FtsA Phage_connect_1 PF05135.13 gi|20090337|ref|NP_616412.1| - 0.25 11.9 6.9 9.1 6.9 0.9 3.6 3 1 0 3 3 3 0 Phage gp6-like head-tail connector protein Vfa1 PF08432.10 gi|20090337|ref|NP_616412.1| - 0.63 10.3 9.3 1.2 9.4 9.3 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF3347 PF11827.8 gi|20090337|ref|NP_616412.1| - 2.5 8.3 13.2 3.1 7.9 10.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) DnaJ_C PF01556.18 gi|20090338|ref|NP_616413.1| - 2e-38 131.8 0.0 2.6e-38 131.4 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|20090338|ref|NP_616413.1| - 3.7e-28 97.4 2.8 3.7e-28 97.4 2.8 2.3 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|20090338|ref|NP_616413.1| - 1e-14 54.6 16.4 2e-14 53.7 16.4 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|20090338|ref|NP_616413.1| - 9.4e-05 22.3 17.2 0.0022 17.9 4.8 2.5 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein Prim_Zn_Ribbon PF08273.12 gi|20090338|ref|NP_616413.1| - 0.00014 22.1 16.3 0.019 15.3 1.0 3.7 4 0 0 4 4 4 2 Zinc-binding domain of primase-helicase Ogr_Delta PF04606.12 gi|20090338|ref|NP_616413.1| - 0.002 18.0 5.4 0.65 10.0 0.1 2.6 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger Lar_restr_allev PF14354.6 gi|20090338|ref|NP_616413.1| - 0.054 13.9 5.8 3.2 8.2 0.6 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar HypA PF01155.19 gi|20090338|ref|NP_616413.1| - 0.39 10.8 9.1 1.8 8.6 1.3 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|20090338|ref|NP_616413.1| - 1.5 8.8 5.4 13 5.7 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|20090338|ref|NP_616413.1| - 5.7 7.0 11.3 43 4.2 11.3 2.1 1 1 0 1 1 1 0 Double zinc ribbon FdhE PF04216.12 gi|20090338|ref|NP_616413.1| - 6.3 6.6 6.5 3.5 7.4 3.9 1.8 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation TrkA_N PF02254.18 gi|20090339|ref|NP_616414.1| - 2.9e-48 163.0 5.7 9.2e-26 90.4 0.3 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|20090339|ref|NP_616414.1| - 3.5e-32 110.1 3.2 1.5e-15 56.8 0.0 3.9 4 0 0 4 4 4 2 TrkA-C domain Shikimate_DH PF01488.20 gi|20090339|ref|NP_616414.1| - 1.2e-08 35.1 2.2 9.9e-05 22.4 0.3 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|20090339|ref|NP_616414.1| - 2.7e-08 34.2 3.8 0.0029 18.0 0.9 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|20090339|ref|NP_616414.1| - 3.3e-06 27.4 3.2 0.012 15.9 0.3 3.2 2 1 2 4 4 4 2 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|20090339|ref|NP_616414.1| - 2e-05 25.1 1.3 0.021 15.4 0.1 3.1 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|20090339|ref|NP_616414.1| - 4.4e-05 22.9 1.7 0.0029 17.0 1.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|20090339|ref|NP_616414.1| - 0.00055 19.9 0.2 1.2 9.1 0.1 2.6 2 1 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|20090339|ref|NP_616414.1| - 0.0014 18.2 0.2 1.7 8.2 0.0 2.5 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|20090339|ref|NP_616414.1| - 0.0015 18.5 2.0 0.081 12.8 0.5 2.3 2 0 0 2 2 2 1 NAD(P)H-binding ThiF PF00899.21 gi|20090339|ref|NP_616414.1| - 0.0017 17.8 0.3 0.98 8.7 0.0 3.3 3 0 0 3 3 3 1 ThiF family DAO PF01266.24 gi|20090339|ref|NP_616414.1| - 0.0029 17.3 0.1 0.0071 16.0 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|20090339|ref|NP_616414.1| - 0.011 14.9 0.9 0.82 8.8 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|20090339|ref|NP_616414.1| - 0.013 15.4 0.6 0.16 11.8 0.1 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|20090339|ref|NP_616414.1| - 0.021 14.4 1.5 0.11 12.0 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) NAD_binding_8 PF13450.6 gi|20090339|ref|NP_616414.1| - 0.04 14.1 0.1 2.9 8.2 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|20090339|ref|NP_616414.1| - 0.07 12.4 0.0 0.28 10.4 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|20090339|ref|NP_616414.1| - 0.091 12.1 0.2 1.3 8.3 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RNase_PH_C PF03725.15 gi|20090339|ref|NP_616414.1| - 0.1 12.7 1.8 9.4 6.4 0.3 3.0 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 SIS PF01380.22 gi|20090339|ref|NP_616414.1| - 0.11 12.4 0.3 24 4.8 0.0 3.1 3 0 0 3 3 3 0 SIS domain AdoHcyase_NAD PF00670.21 gi|20090339|ref|NP_616414.1| - 0.15 12.1 2.8 0.45 10.6 0.8 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PglD_N PF17836.1 gi|20090339|ref|NP_616414.1| - 0.17 12.6 3.3 7.4 7.3 0.5 2.8 2 1 0 2 2 2 0 PglD N-terminal domain NmrA PF05368.13 gi|20090339|ref|NP_616414.1| - 0.31 10.6 3.8 0.12 11.9 0.8 1.8 2 0 0 2 2 2 0 NmrA-like family NAD_binding_3 PF03447.16 gi|20090339|ref|NP_616414.1| - 0.42 11.3 3.0 10 6.8 0.2 2.6 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain TrkH PF02386.16 gi|20090340|ref|NP_616415.1| - 6.2e-59 199.8 19.5 1.7e-58 198.3 19.5 1.6 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|20090341|ref|NP_616416.1| - 2.7e-46 156.6 7.9 9e-26 90.4 0.6 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|20090341|ref|NP_616416.1| - 7e-33 112.3 2.0 5.7e-15 54.9 0.0 3.4 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.20 gi|20090341|ref|NP_616416.1| - 1.7e-07 31.4 2.4 0.0021 18.1 0.3 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|20090341|ref|NP_616416.1| - 1.3e-06 28.8 3.9 0.023 15.1 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|20090341|ref|NP_616416.1| - 1.5e-05 24.4 4.5 0.0019 17.5 1.9 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|20090341|ref|NP_616416.1| - 0.0003 21.0 6.7 0.11 12.7 0.9 3.2 2 1 0 3 3 3 2 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|20090341|ref|NP_616416.1| - 0.00051 20.0 2.1 0.026 14.4 0.3 2.3 2 0 0 2 2 2 1 NAD(P)H-binding Pyr_redox_2 PF07992.14 gi|20090341|ref|NP_616416.1| - 0.0089 15.3 2.0 0.97 8.6 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase RE_BsaWI PF18643.1 gi|20090341|ref|NP_616416.1| - 0.0091 15.9 1.4 3.6 7.5 0.0 3.2 3 0 0 3 3 3 1 BsaWI restriction endonuclease type 2 Pyr_redox PF00070.27 gi|20090341|ref|NP_616416.1| - 0.015 15.8 3.3 0.14 12.8 0.2 3.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|20090341|ref|NP_616416.1| - 0.021 14.4 0.1 4.2 7.0 0.0 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|20090341|ref|NP_616416.1| - 0.025 14.1 0.8 0.19 11.3 0.2 2.7 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|20090341|ref|NP_616416.1| - 0.028 14.3 0.6 0.22 11.4 0.1 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|20090341|ref|NP_616416.1| - 0.07 12.7 1.5 7.3 6.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DUF4748 PF15932.5 gi|20090341|ref|NP_616416.1| - 0.095 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4748) DAO PF01266.24 gi|20090341|ref|NP_616416.1| - 1.2 8.6 3.5 0.29 10.7 0.3 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.21 gi|20090341|ref|NP_616416.1| - 1.6 8.1 4.3 26 4.1 0.1 3.2 2 1 0 3 3 3 0 ThiF family TrkH PF02386.16 gi|20090342|ref|NP_616417.1| - 1.5e-66 224.9 17.2 1.3e-65 221.8 17.2 1.9 1 1 0 1 1 1 1 Cation transport protein DUF1772 PF08592.11 gi|20090342|ref|NP_616417.1| - 7.4 6.9 10.6 0.27 11.5 0.4 3.1 1 1 1 3 3 3 0 Domain of unknown function (DUF1772) FAD_binding_3 PF01494.19 gi|20090343|ref|NP_616418.1| - 1e-20 74.3 1.9 3.2e-19 69.4 1.9 2.7 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|20090343|ref|NP_616418.1| - 1.4e-12 47.4 0.2 7e-08 32.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|20090343|ref|NP_616418.1| - 1.1e-10 41.5 2.9 3.2e-10 39.9 2.9 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|20090343|ref|NP_616418.1| - 2.8e-10 40.3 1.0 0.00052 19.7 0.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|20090343|ref|NP_616418.1| - 1.5e-08 34.1 0.0 3.2e-06 26.5 0.2 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|20090343|ref|NP_616418.1| - 5e-08 32.5 3.7 3.1e-06 26.7 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|20090343|ref|NP_616418.1| - 6.4e-08 31.7 1.4 1.1e-07 30.9 0.1 2.0 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|20090343|ref|NP_616418.1| - 3.2e-07 30.5 0.1 1e-06 28.9 0.0 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|20090343|ref|NP_616418.1| - 7.7e-06 25.2 0.7 2.5e-05 23.5 0.8 2.0 2 1 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|20090343|ref|NP_616418.1| - 3.4e-05 22.9 4.0 0.046 12.6 0.2 2.5 2 1 1 3 3 3 2 Tryptophan halogenase Thi4 PF01946.17 gi|20090343|ref|NP_616418.1| - 0.00026 20.3 0.3 0.0011 18.2 0.1 2.1 3 0 0 3 3 3 1 Thi4 family Pyr_redox_3 PF13738.6 gi|20090343|ref|NP_616418.1| - 0.0016 17.8 0.2 0.0037 16.6 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|20090343|ref|NP_616418.1| - 0.0027 17.0 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|20090343|ref|NP_616418.1| - 0.013 15.4 0.1 0.058 13.3 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|20090343|ref|NP_616418.1| - 0.036 14.6 0.0 0.036 14.6 0.0 2.4 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|20090343|ref|NP_616418.1| - 0.12 11.4 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase NAD_binding_7 PF13241.6 gi|20090343|ref|NP_616418.1| - 0.24 11.9 0.6 1.4 9.4 0.6 2.4 1 1 0 1 1 1 0 Putative NAD(P)-binding Fer4 PF00037.27 gi|20090344|ref|NP_616419.1| - 2.2e-14 52.5 18.0 2.9e-07 30.0 6.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20090344|ref|NP_616419.1| - 1.6e-11 44.6 33.0 2.9e-06 27.8 13.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20090344|ref|NP_616419.1| - 5.4e-09 35.8 14.0 4.5e-05 23.3 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20090344|ref|NP_616419.1| - 1.6e-08 34.5 6.9 0.00077 19.5 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20090344|ref|NP_616419.1| - 4.4e-08 33.9 9.9 0.00025 21.9 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20090344|ref|NP_616419.1| - 1.1e-07 31.9 20.3 3.7e-05 23.8 11.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20090344|ref|NP_616419.1| - 2.3e-07 30.8 9.8 4e-07 30.1 9.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20090344|ref|NP_616419.1| - 3.8e-06 26.7 13.7 0.0047 16.9 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20090344|ref|NP_616419.1| - 7.3e-05 23.1 10.4 0.046 14.2 2.1 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20090344|ref|NP_616419.1| - 0.0003 21.2 10.3 0.021 15.4 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|20090344|ref|NP_616419.1| - 0.0047 17.6 12.8 0.34 11.7 0.3 3.4 3 1 1 4 4 4 1 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|20090344|ref|NP_616419.1| - 0.013 16.0 13.6 0.25 11.9 2.3 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20090344|ref|NP_616419.1| - 0.023 15.2 13.8 0.69 10.6 3.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20090344|ref|NP_616419.1| - 0.033 15.1 23.3 0.28 12.2 3.5 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|20090344|ref|NP_616419.1| - 0.042 14.0 1.0 0.067 13.3 1.0 1.5 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|20090344|ref|NP_616419.1| - 0.045 14.0 11.1 0.6 10.3 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20090344|ref|NP_616419.1| - 0.045 14.6 10.2 0.26 12.2 0.6 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|20090344|ref|NP_616419.1| - 0.34 11.0 8.3 3.1 7.9 8.3 3.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster zf-CHCC PF10276.9 gi|20090344|ref|NP_616419.1| - 1.1 9.3 13.2 0.24 11.5 1.7 2.4 1 1 1 2 2 2 0 Zinc-finger domain Desulfoferrod_N PF06397.12 gi|20090344|ref|NP_616419.1| - 8.2 6.2 14.0 0.14 11.8 4.4 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Radical_SAM PF04055.21 gi|20090345|ref|NP_616420.1| - 4.7e-16 59.6 2.7 2.7e-15 57.2 0.0 2.4 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20090345|ref|NP_616420.1| - 6.4e-07 29.7 1.5 1.7e-06 28.3 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20090345|ref|NP_616420.1| - 2.6e-05 24.4 1.6 4.4e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain TetR_N PF00440.23 gi|20090346|ref|NP_616421.1| - 4.8e-11 42.3 0.0 1e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family CofC PF01983.16 gi|20090347|ref|NP_616422.1| - 1.6e-48 164.7 0.0 2e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|20090347|ref|NP_616422.1| - 0.0012 19.2 0.0 0.0018 18.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.21 gi|161484937|ref|NP_616423.2| - 1.9e-19 70.7 0.3 3.2e-19 69.9 0.3 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|20090349|ref|NP_616424.1| - 6.2e-20 72.2 0.2 1.1e-19 71.4 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer2 PF00111.27 gi|20090349|ref|NP_616424.1| - 0.051 13.5 0.2 0.12 12.3 0.2 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain HlyD_D23 PF16576.5 gi|20090349|ref|NP_616424.1| - 0.052 12.8 0.0 0.089 12.0 0.0 1.3 1 0 0 1 1 1 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Fer4_14 PF13394.6 gi|20090349|ref|NP_616424.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer2_3 PF13085.6 gi|20090349|ref|NP_616424.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Radical_SAM PF04055.21 gi|20090350|ref|NP_616425.1| - 8.5e-15 55.5 0.0 2.7e-14 53.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Amino_oxidase PF01593.24 gi|20090351|ref|NP_616426.1| - 7.4e-19 68.4 0.0 1.2e-18 67.7 0.0 1.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|20090351|ref|NP_616426.1| - 3.7e-11 43.1 0.1 9.9e-11 41.7 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|20090351|ref|NP_616426.1| - 9.9e-09 34.8 0.1 6e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|20090351|ref|NP_616426.1| - 4.8e-08 33.0 0.3 0.00024 20.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|20090351|ref|NP_616426.1| - 2.3e-07 30.3 0.2 0.0073 15.6 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|20090351|ref|NP_616426.1| - 3.6e-06 25.9 1.7 0.0035 16.1 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|20090351|ref|NP_616426.1| - 0.00042 20.8 1.0 0.057 14.0 0.1 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|20090351|ref|NP_616426.1| - 0.0014 18.1 0.7 0.035 13.4 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|20090351|ref|NP_616426.1| - 0.0014 17.8 0.5 0.025 13.6 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A GMC_oxred_N PF00732.19 gi|20090351|ref|NP_616426.1| - 0.013 14.9 0.5 0.098 12.0 0.1 2.0 2 0 0 2 2 2 0 GMC oxidoreductase ApbA PF02558.16 gi|20090351|ref|NP_616426.1| - 0.081 12.6 0.3 0.2 11.3 0.1 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|20090351|ref|NP_616426.1| - 0.1 11.8 1.7 0.13 11.5 0.6 1.7 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 gi|20090351|ref|NP_616426.1| - 0.28 10.4 2.3 1.3 8.2 0.1 2.4 2 1 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 gi|20090351|ref|NP_616426.1| - 0.52 10.3 2.5 1.6 8.7 0.1 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4 PF00037.27 gi|20090352|ref|NP_616427.1| - 3.1e-13 48.9 16.4 1.1e-06 28.1 5.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20090352|ref|NP_616427.1| - 2.1e-09 37.4 23.6 1.4e-06 28.3 12.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20090352|ref|NP_616427.1| - 4.2e-09 36.2 13.9 0.0001 22.5 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20090352|ref|NP_616427.1| - 8.9e-09 35.8 12.5 0.00033 21.2 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20090352|ref|NP_616427.1| - 1.1e-08 35.0 12.0 1.7e-08 34.4 12.0 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20090352|ref|NP_616427.1| - 1.9e-07 31.9 11.5 0.0018 19.2 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|20090352|ref|NP_616427.1| - 3e-07 30.2 15.7 0.0018 18.2 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20090352|ref|NP_616427.1| - 1.3e-06 28.1 15.0 0.0028 17.7 4.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20090352|ref|NP_616427.1| - 1.7e-05 25.3 12.5 0.0027 18.2 1.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20090352|ref|NP_616427.1| - 5.3e-05 23.9 20.0 0.007 17.2 6.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20090352|ref|NP_616427.1| - 0.00029 20.9 26.9 0.0054 16.8 15.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20090352|ref|NP_616427.1| - 0.00033 21.0 14.2 0.017 15.6 3.1 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20090352|ref|NP_616427.1| - 0.0012 19.6 11.1 0.041 14.7 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20090352|ref|NP_616427.1| - 0.028 14.6 11.1 0.17 12.1 11.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20090352|ref|NP_616427.1| - 0.039 14.5 14.1 0.25 11.9 2.4 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|20090352|ref|NP_616427.1| - 0.088 13.6 15.9 0.32 11.8 2.8 3.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain zf-C2H2_11 PF16622.5 gi|20090352|ref|NP_616427.1| - 2.3 8.0 8.1 0.9 9.4 0.8 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type Oxidored_q4 PF00507.19 gi|20090354|ref|NP_616429.1| - 4.2e-33 113.5 4.6 6.3e-33 112.9 4.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 gi|20090355|ref|NP_616430.1| - 4.1e-23 81.6 0.0 5.6e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Scytalone_dh PF02982.14 gi|20090355|ref|NP_616430.1| - 0.13 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Scytalone dehydratase Complex1_30kDa PF00329.19 gi|20090356|ref|NP_616431.1| - 2.5e-38 131.4 0.0 3.6e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit zf-C2H2_2 PF12756.7 gi|20090356|ref|NP_616431.1| - 0.013 15.8 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) RMI1_C PF16099.5 gi|20090356|ref|NP_616431.1| - 0.095 12.5 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Complex1_49kDa PF00346.19 gi|20090357|ref|NP_616432.1| - 1.5e-88 296.5 0.0 1.1e-86 290.3 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|20090357|ref|NP_616432.1| - 6.2e-07 28.7 0.0 7.5e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Nickel-dependent hydrogenase rve_2 PF13333.6 gi|20090357|ref|NP_616432.1| - 0.087 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain NADHdh PF00146.21 gi|20090358|ref|NP_616433.1| - 7.6e-104 347.2 20.5 8.9e-104 347.0 20.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|20090359|ref|NP_616434.1| - 1.9e-15 55.9 12.8 4.8e-09 35.7 4.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20090359|ref|NP_616434.1| - 1.1e-12 48.4 6.4 1.8e-12 47.6 6.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20090359|ref|NP_616434.1| - 7e-10 38.9 6.4 9.2e-10 38.5 5.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20090359|ref|NP_616434.1| - 2.5e-09 38.0 6.4 0.00056 20.8 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|20090359|ref|NP_616434.1| - 2.3e-08 34.0 9.1 2.3e-08 34.0 9.1 1.7 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20090359|ref|NP_616434.1| - 2.2e-07 30.9 9.2 5e-07 29.7 9.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20090359|ref|NP_616434.1| - 2.8e-07 30.3 13.0 7.7e-05 22.6 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20090359|ref|NP_616434.1| - 5.9e-07 29.8 7.4 1.6e-06 28.4 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20090359|ref|NP_616434.1| - 1e-06 28.5 8.7 7.9e-05 22.5 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20090359|ref|NP_616434.1| - 3.8e-05 24.3 3.4 0.013 16.3 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|20090359|ref|NP_616434.1| - 6.2e-05 23.8 4.9 0.011 16.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20090359|ref|NP_616434.1| - 0.00011 22.7 10.3 0.014 15.9 10.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20090359|ref|NP_616434.1| - 0.00013 22.2 11.4 0.0039 17.6 1.8 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20090359|ref|NP_616434.1| - 0.00056 20.7 19.7 0.0056 17.5 2.9 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20090359|ref|NP_616434.1| - 0.00071 19.8 4.1 0.32 11.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20090359|ref|NP_616434.1| - 0.00081 19.9 10.0 0.002 18.6 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q3 PF00499.20 gi|20090360|ref|NP_616435.1| - 2.9e-19 69.2 14.6 2.9e-19 69.2 14.6 1.6 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SLATT_6 PF18169.1 gi|20090360|ref|NP_616435.1| - 0.23 11.0 5.0 0.11 12.0 3.0 1.4 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF4040 PF13244.6 gi|20090360|ref|NP_616435.1| - 0.67 10.1 17.2 0.19 11.9 14.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF2109 PF09882.9 gi|20090360|ref|NP_616435.1| - 1.6 8.8 11.8 1.8 8.7 10.7 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) DUF3165 PF11364.8 gi|20090360|ref|NP_616435.1| - 4.9 7.6 13.4 8.8 6.7 13.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) Oxidored_q3 PF00499.20 gi|20090361|ref|NP_616436.1| - 3.5e-13 49.5 1.0 3.9e-13 49.3 1.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.24 gi|20090362|ref|NP_616437.1| - 2.6e-25 88.1 5.8 2.9e-25 87.9 5.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BMC PF00936.19 gi|20090362|ref|NP_616437.1| - 0.011 15.8 0.1 0.013 15.4 0.1 1.1 1 0 0 1 1 1 0 BMC domain DUF5392 PF17370.2 gi|20090362|ref|NP_616437.1| - 0.16 12.0 1.5 0.19 11.8 1.5 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5392) Proton_antipo_C PF01010.19 gi|20090362|ref|NP_616437.1| - 0.18 11.4 2.4 0.21 11.2 2.4 1.0 1 0 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|20090363|ref|NP_616438.1| - 9.4e-74 248.2 21.8 9.4e-74 248.2 21.8 2.3 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|20090363|ref|NP_616438.1| - 2.9e-16 59.3 2.3 2.9e-16 59.3 2.3 4.5 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|20090363|ref|NP_616438.1| - 0.094 12.3 6.8 0.7 9.5 6.8 2.4 1 1 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|20090364|ref|NP_616439.1| - 2.9e-71 240.1 29.4 5.8e-71 239.1 29.4 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|20090364|ref|NP_616439.1| - 0.00036 20.6 1.0 0.00036 20.6 1.0 4.6 4 3 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus DUF4500 PF14937.6 gi|20090364|ref|NP_616439.1| - 2.9 8.0 4.0 7.7 6.6 0.1 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4500) Proton_antipo_M PF00361.20 gi|20090365|ref|NP_616440.1| - 4.6e-71 239.4 28.1 4.6e-71 239.4 28.1 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter GET2 PF08690.10 gi|20090365|ref|NP_616440.1| - 0.17 11.5 2.0 0.35 10.5 2.0 1.4 1 0 0 1 1 1 0 GET complex subunit GET2 FpoO PF10621.9 gi|20090366|ref|NP_616441.1| - 3e-52 175.6 3.2 3.7e-52 175.3 3.2 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO zf-C4pol PF14260.6 gi|20090366|ref|NP_616441.1| - 0.0015 18.9 0.1 0.79 10.2 0.0 2.3 1 1 0 2 2 2 2 C4-type zinc-finger of DNA polymerase delta DUF4428 PF14471.6 gi|20090366|ref|NP_616441.1| - 0.0046 16.9 9.4 0.028 14.3 1.2 3.0 2 2 0 2 2 2 2 Domain of unknown function (DUF4428) NosD PF05048.13 gi|20090367|ref|NP_616442.1| - 9.4e-51 172.4 144.5 1.8e-13 50.4 6.6 5.3 2 2 3 5 5 5 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20090367|ref|NP_616442.1| - 1.4e-45 154.9 160.0 1e-14 54.7 32.6 6.5 3 2 3 6 6 6 5 Right handed beta helix region Pectinesterase PF01095.19 gi|20090367|ref|NP_616442.1| - 2.3e-05 23.3 1.2 0.0068 15.2 0.4 2.8 2 0 0 2 2 2 2 Pectinesterase Spt4 PF06093.13 gi|20090367|ref|NP_616442.1| - 0.054 13.6 0.9 0.71 10.0 0.1 2.9 3 0 0 3 3 3 0 Spt4/RpoE2 zinc finger FpoO PF10621.9 gi|20090368|ref|NP_616443.1| - 2.2e-27 95.6 0.6 2.6e-27 95.3 0.6 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO DUF4428 PF14471.6 gi|20090368|ref|NP_616443.1| - 0.003 17.4 0.2 0.038 13.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) LVIVD PF08309.11 gi|20090369|ref|NP_616444.1| - 5e-102 333.0 57.0 2.1e-19 68.6 1.2 7.7 7 0 0 7 7 7 7 LVIVD repeat LGFP PF08310.11 gi|20090369|ref|NP_616444.1| - 2.9e-37 127.0 15.5 5.7e-05 23.6 0.0 9.8 9 0 0 9 9 9 8 LGFP repeat PKD PF00801.20 gi|20090369|ref|NP_616444.1| - 1.2e-09 37.9 10.2 2.3e-09 37.0 3.6 3.5 3 0 0 3 3 3 1 PKD domain Reprolysin_3 PF13582.6 gi|20090369|ref|NP_616444.1| - 0.00067 20.2 0.5 0.011 16.2 0.1 2.9 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|20090369|ref|NP_616444.1| - 0.0034 17.6 0.3 0.011 15.9 0.3 1.8 1 0 0 1 1 1 1 Metallo-peptidase family M12 EF-hand_1 PF00036.32 gi|20090369|ref|NP_616444.1| - 0.004 16.6 3.6 0.68 9.6 1.4 3.3 2 0 0 2 2 2 2 EF hand Reprolysin_4 PF13583.6 gi|20090369|ref|NP_616444.1| - 0.0098 15.6 0.1 0.027 14.1 0.1 1.7 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|20090369|ref|NP_616444.1| - 0.013 15.4 0.5 0.03 14.2 0.5 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like CPSF_A PF03178.15 gi|20090369|ref|NP_616444.1| - 0.013 14.8 1.0 0.22 10.8 0.1 2.9 2 2 2 4 4 4 0 CPSF A subunit region Peptidase_M10 PF00413.24 gi|20090369|ref|NP_616444.1| - 0.034 14.0 0.1 0.15 11.9 0.1 2.0 1 0 0 1 1 1 0 Matrixin EF-hand_6 PF13405.6 gi|20090369|ref|NP_616444.1| - 0.14 12.2 3.0 2.6 8.2 0.6 3.2 2 0 0 2 2 2 0 EF-hand domain PQQ_3 PF13570.6 gi|20090369|ref|NP_616444.1| - 3.8 8.1 44.4 0.34 11.5 0.8 7.6 7 0 0 7 7 7 0 PQQ-like domain Polbeta PF18765.1 gi|20090371|ref|NP_616446.1| - 2.6e-21 75.5 0.0 3.7e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20090371|ref|NP_616446.1| - 4.6e-11 42.9 0.0 8.8e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Lectin_like PF18560.1 gi|20090372|ref|NP_616447.1| - 2.9e-61 206.2 0.1 6.6e-61 205.1 0.1 1.7 1 0 0 1 1 1 1 Lectin like domain Peptidase_C1 PF00112.23 gi|20090372|ref|NP_616447.1| - 4.4e-25 89.1 0.2 6.7e-25 88.5 0.2 1.2 1 0 0 1 1 1 1 Papain family cysteine protease Peptidase_C1_2 PF03051.15 gi|20090372|ref|NP_616447.1| - 0.001 18.0 0.1 0.13 11.0 0.1 2.2 2 0 0 2 2 2 2 Peptidase C1-like family EF-hand_6 PF13405.6 gi|20090372|ref|NP_616447.1| - 0.0021 17.9 3.3 0.52 10.4 0.3 2.9 2 0 0 2 2 2 2 EF-hand domain Arch_fla_DE PF04659.13 gi|20090372|ref|NP_616447.1| - 0.025 14.5 0.0 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 Archaeal flagella protein EF-hand_8 PF13833.6 gi|20090372|ref|NP_616447.1| - 0.56 10.1 5.1 1.7 8.6 0.5 2.5 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|20090372|ref|NP_616447.1| - 1.5 8.6 10.9 1.3 8.7 0.3 2.9 3 0 0 3 3 3 0 EF hand VAPB_antitox PF02697.14 gi|20090373|ref|NP_616448.1| - 1.5e-18 67.3 2.2 1.7e-18 67.1 2.2 1.1 1 0 0 1 1 1 1 Putative antitoxin PIN PF01850.21 gi|20090374|ref|NP_616449.1| - 2.3e-15 57.2 0.1 2.8e-15 56.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain MFS_1 PF07690.16 gi|20090375|ref|NP_616450.1| - 1.2e-48 165.8 27.0 1.2e-48 165.8 27.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|20090375|ref|NP_616450.1| - 9.4e-07 27.7 4.6 9.4e-07 27.7 4.6 3.1 2 1 0 2 2 2 1 MFS/sugar transport protein MFS_3 PF05977.13 gi|20090375|ref|NP_616450.1| - 0.0012 17.4 10.9 0.041 12.3 1.3 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|20090375|ref|NP_616450.1| - 0.0012 17.2 0.2 0.0012 17.2 0.2 2.4 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 gi|20090375|ref|NP_616450.1| - 0.0029 17.0 5.1 0.0029 17.0 5.1 2.5 2 1 0 3 3 3 1 Uncharacterised MFS-type transporter YbfB TRI12 PF06609.13 gi|20090375|ref|NP_616450.1| - 0.0043 15.5 1.0 0.0043 15.5 1.0 2.3 2 1 1 3 3 3 1 Fungal trichothecene efflux pump (TRI12) Pentapeptide PF00805.22 gi|20090375|ref|NP_616450.1| - 0.0055 16.3 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|20090375|ref|NP_616450.1| - 0.066 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) CrgA PF06781.12 gi|20090375|ref|NP_616450.1| - 2.9 8.0 5.7 3.9 7.6 0.0 3.7 3 1 1 4 4 4 0 Cell division protein CrgA NosD PF05048.13 gi|20090376|ref|NP_616451.1| - 2e-59 200.8 47.7 1.1e-53 182.0 31.7 2.8 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20090376|ref|NP_616451.1| - 4.7e-27 94.8 87.4 4.1e-14 52.7 23.8 4.0 2 1 2 4 4 4 3 Right handed beta helix region SNF PF00209.18 gi|20090377|ref|NP_616452.1| - 1.9e-108 363.4 39.6 1.8e-71 241.4 19.4 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family WD40 PF00400.32 gi|20090378|ref|NP_616453.1| - 2.8e-24 84.9 15.3 0.011 16.6 0.1 8.4 8 0 0 8 8 8 8 WD domain, G-beta repeat PQQ PF01011.21 gi|20090378|ref|NP_616453.1| - 6.4e-19 66.9 19.8 0.00053 19.8 0.0 7.1 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.6 gi|20090378|ref|NP_616453.1| - 6.5e-19 67.8 17.0 0.00013 22.4 0.1 8.0 8 0 0 8 8 8 4 PQQ-like domain PQQ_2 PF13360.6 gi|20090378|ref|NP_616453.1| - 5.7e-17 62.1 3.3 5.3e-07 29.5 0.1 3.1 1 1 2 3 3 3 3 PQQ-like domain ANAPC4_WD40 PF12894.7 gi|20090378|ref|NP_616453.1| - 2.9e-12 46.7 0.1 0.00046 20.4 0.0 5.0 2 2 2 5 5 5 3 Anaphase-promoting complex subunit 4 WD40 domain WD40_like PF17005.5 gi|20090378|ref|NP_616453.1| - 1.5e-05 24.5 5.7 0.38 10.0 1.5 4.4 3 2 1 4 4 4 2 WD40-like domain eIF2A PF08662.11 gi|20090378|ref|NP_616453.1| - 6e-05 23.0 3.0 0.099 12.5 0.1 3.6 1 1 2 3 3 3 2 Eukaryotic translation initiation factor eIF2A HPS3_N PF14761.6 gi|20090378|ref|NP_616453.1| - 0.036 13.6 0.0 3.7 7.0 0.0 2.3 2 0 0 2 2 2 0 Hermansky-Pudlak syndrome 3 RAB3GAP2_N PF14655.6 gi|20090378|ref|NP_616453.1| - 0.18 11.0 0.1 69 2.5 0.0 3.6 2 1 1 3 3 3 0 Rab3 GTPase-activating protein regulatory subunit N-terminus DUF3042 PF11240.8 gi|20090378|ref|NP_616453.1| - 0.19 11.8 0.0 2.8 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) Ge1_WD40 PF16529.5 gi|20090378|ref|NP_616453.1| - 0.24 10.3 2.6 55 2.6 0.0 4.1 2 1 3 5 5 5 0 WD40 region of Ge1, enhancer of mRNA-decapping protein Cytochrom_D1 PF02239.16 gi|20090378|ref|NP_616453.1| - 0.45 9.0 4.1 3.1 6.2 1.1 3.1 2 1 2 4 4 4 0 Cytochrome D1 heme domain PPC PF04151.15 gi|20090378|ref|NP_616453.1| - 0.68 11.1 17.6 1.7 9.8 0.6 5.1 1 1 2 4 4 4 0 Bacterial pre-peptidase C-terminal domain Gram_pos_anchor PF00746.21 gi|20090378|ref|NP_616453.1| - 4.1 7.5 5.9 0.82 9.7 0.7 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Radical_SAM PF04055.21 gi|20090379|ref|NP_616454.1| - 3.9e-22 79.4 0.1 4.6e-22 79.2 0.1 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|20090379|ref|NP_616454.1| - 3.8e-08 33.5 0.0 8.6e-08 32.3 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_L7Ae PF01248.26 gi|20090380|ref|NP_616455.1| - 2.7e-26 91.1 0.8 3.1e-26 90.9 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|20090380|ref|NP_616455.1| - 0.0024 17.7 0.0 0.0037 17.1 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|20090380|ref|NP_616455.1| - 0.11 13.0 0.1 0.13 12.7 0.1 1.3 1 1 0 1 1 1 0 eRF1 domain 3 Ribosomal_S28e PF01200.18 gi|20090381|ref|NP_616456.1| - 4e-28 97.2 0.6 4.7e-28 97.0 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|20090382|ref|NP_616457.1| - 1.2e-19 70.3 1.7 1.3e-19 70.2 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|20090382|ref|NP_616457.1| - 4.1e-05 23.6 2.8 5.6e-05 23.2 2.8 1.2 1 0 0 1 1 1 1 YHS domain zf-FLZ PF04570.14 gi|20090382|ref|NP_616457.1| - 0.14 11.7 3.0 0.2 11.1 3.0 1.3 1 0 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 VATC PF18716.1 gi|20090382|ref|NP_616457.1| - 0.24 11.3 5.2 0.44 10.4 5.2 1.5 1 1 0 1 1 1 0 Vms1-associating treble clef domain NDK PF00334.19 gi|20090383|ref|NP_616458.1| - 2.4e-55 186.2 0.0 2.7e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.27 gi|20090384|ref|NP_616459.1| - 6.2e-32 110.7 0.1 2.1e-30 105.7 0.1 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|20090384|ref|NP_616459.1| - 6.1e-30 103.0 2.6 6.1e-30 103.0 2.6 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|20090384|ref|NP_616459.1| - 5.6e-22 77.9 4.1 3.6e-21 75.3 0.3 3.0 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|20090384|ref|NP_616459.1| - 1.4e-13 51.0 5.4 1.1e-10 41.7 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|20090384|ref|NP_616459.1| - 8.5e-09 35.5 0.3 2.6e-08 34.0 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|20090384|ref|NP_616459.1| - 0.012 15.5 0.0 0.034 13.9 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|20090384|ref|NP_616459.1| - 0.038 14.1 0.0 0.93 9.5 0.0 2.4 2 0 0 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|20090384|ref|NP_616459.1| - 0.051 13.3 0.0 0.48 10.2 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|20090384|ref|NP_616459.1| - 0.057 13.0 0.1 7.6 6.1 0.0 2.8 2 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|20090384|ref|NP_616459.1| - 0.076 13.2 0.0 0.22 11.7 0.0 1.9 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Ribosomal_S6e PF01092.19 gi|20090385|ref|NP_616460.1| - 1.2e-41 141.6 0.1 1.3e-41 141.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Ion_trans_2 PF07885.16 gi|20090386|ref|NP_616461.1| - 5.6e-12 45.4 9.4 5.6e-12 45.4 9.4 1.6 1 1 1 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|20090386|ref|NP_616461.1| - 0.00075 18.8 8.0 0.00093 18.5 8.0 1.1 1 0 0 1 1 1 1 Ion transport protein LolA_like PF17131.4 gi|20090387|ref|NP_616462.1| - 3.6e-09 36.6 1.3 1e-08 35.1 1.0 1.8 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein DUF2092 PF09865.9 gi|20090387|ref|NP_616462.1| - 1.2e-05 24.7 0.2 0.029 13.7 0.0 2.2 1 1 1 2 2 2 2 Predicted periplasmic protein (DUF2092) MucB_RseB PF03888.14 gi|20090387|ref|NP_616462.1| - 0.00032 20.3 0.0 0.00043 19.9 0.0 1.3 1 0 0 1 1 1 1 MucB/RseB N-terminal domain DUF1571 PF07608.11 gi|20090387|ref|NP_616462.1| - 0.0036 16.8 0.0 0.0052 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1571) MOSP_C PF02722.15 gi|20090387|ref|NP_616462.1| - 0.016 14.9 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Major Outer Sheath Protein C-terminal domain LolA_2 PF16584.5 gi|20090387|ref|NP_616462.1| - 0.15 11.9 0.7 0.22 11.4 0.7 1.2 1 0 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA RL10P_insert PF17777.1 gi|20090387|ref|NP_616462.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Insertion domain in 60S ribosomal protein L10P HTH_24 PF13412.6 gi|20090388|ref|NP_616463.1| - 1.8e-13 49.8 1.2 3.2e-09 36.2 0.3 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20090388|ref|NP_616463.1| - 1.8e-13 50.3 0.0 1.2e-05 25.3 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|20090388|ref|NP_616463.1| - 2.6e-07 30.5 0.6 0.00064 19.6 0.1 2.4 2 0 0 2 2 2 2 HTH domain HTH_5 PF01022.20 gi|20090388|ref|NP_616463.1| - 8.4e-07 28.8 0.0 0.021 14.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20090388|ref|NP_616463.1| - 2.4e-06 27.4 0.0 0.0043 16.9 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|20090388|ref|NP_616463.1| - 9.4e-05 22.3 0.0 0.09 12.7 0.0 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|20090388|ref|NP_616463.1| - 9.6e-05 22.2 0.1 0.0053 16.6 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|20090388|ref|NP_616463.1| - 0.00048 20.1 0.1 0.0011 18.9 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|20090388|ref|NP_616463.1| - 0.00073 19.3 0.0 0.38 10.6 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|20090388|ref|NP_616463.1| - 0.0021 18.1 0.1 0.058 13.4 0.0 2.3 1 1 1 2 2 2 1 Transposase HTH_36 PF13730.6 gi|20090388|ref|NP_616463.1| - 0.004 17.1 0.5 0.032 14.2 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain TetR_N PF00440.23 gi|20090388|ref|NP_616463.1| - 0.0083 15.9 0.2 0.77 9.6 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family FaeA PF04703.12 gi|20090388|ref|NP_616463.1| - 0.0084 16.5 1.5 2 8.8 0.5 2.3 2 0 0 2 2 2 1 FaeA-like protein RepL PF05732.11 gi|20090388|ref|NP_616463.1| - 0.016 14.6 0.1 0.03 13.8 0.1 1.5 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|20090388|ref|NP_616463.1| - 0.025 14.8 0.0 0.064 13.5 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|20090388|ref|NP_616463.1| - 0.039 13.8 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.16 gi|20090388|ref|NP_616463.1| - 0.043 14.2 0.1 0.14 12.5 0.1 1.9 1 1 1 2 2 2 0 Penicillinase repressor PaaX PF07848.12 gi|20090388|ref|NP_616463.1| - 0.046 13.9 0.1 2.5 8.4 0.0 2.3 2 0 0 2 2 2 0 PaaX-like protein Mrr_N PF14338.6 gi|20090388|ref|NP_616463.1| - 0.062 13.4 0.1 0.21 11.8 0.1 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_28 PF13518.6 gi|20090388|ref|NP_616463.1| - 0.11 12.6 1.4 0.75 10.0 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain GntR PF00392.21 gi|20090388|ref|NP_616463.1| - 0.12 12.1 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PD40 PF07676.12 gi|20090389|ref|NP_616464.1| - 5.2e-16 58.1 25.1 0.0092 15.9 0.0 8.4 8 0 0 8 8 8 6 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|20090389|ref|NP_616464.1| - 4.8e-11 42.0 5.9 0.0026 16.6 0.0 5.9 2 1 3 5 5 5 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF5050 PF16472.5 gi|20090389|ref|NP_616464.1| - 5.7e-09 35.6 0.2 2e-08 33.8 0.2 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF5050) CarboxypepD_reg PF13620.6 gi|20090389|ref|NP_616464.1| - 0.0053 17.0 0.0 0.015 15.6 0.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|20090389|ref|NP_616464.1| - 0.012 15.5 0.0 0.043 13.7 0.0 1.9 2 0 0 2 2 2 0 PEGA domain CarbopepD_reg_2 PF13715.6 gi|20090389|ref|NP_616464.1| - 0.023 14.7 0.0 0.055 13.5 0.0 1.6 1 0 0 1 1 1 0 CarboxypepD_reg-like domain Coatomer_WDAD PF04053.14 gi|20090389|ref|NP_616464.1| - 0.08 12.0 0.3 0.23 10.5 0.3 1.7 2 0 0 2 2 2 0 Coatomer WD associated region DUF4198 PF10670.9 gi|20090389|ref|NP_616464.1| - 0.13 12.6 0.0 0.4 11.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) HTH_24 PF13412.6 gi|20090390|ref|NP_616465.1| - 4.6e-12 45.3 0.7 5e-09 35.6 0.2 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20090390|ref|NP_616465.1| - 2.8e-10 40.1 0.0 0.00038 20.5 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|20090390|ref|NP_616465.1| - 1.6e-05 24.7 0.0 0.2 11.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20090390|ref|NP_616465.1| - 0.00016 21.5 0.1 0.018 15.0 0.0 2.5 2 0 0 2 2 2 1 HTH domain FaeA PF04703.12 gi|20090390|ref|NP_616465.1| - 0.0013 19.0 0.6 1.1 9.7 0.2 2.3 2 0 0 2 2 2 2 FaeA-like protein MarR_2 PF12802.7 gi|20090390|ref|NP_616465.1| - 0.0022 17.8 0.0 0.075 12.9 0.0 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|20090390|ref|NP_616465.1| - 0.011 15.5 0.0 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|20090390|ref|NP_616465.1| - 0.019 15.1 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_IS630 PF01710.16 gi|20090390|ref|NP_616465.1| - 0.023 14.7 0.0 0.83 9.7 0.0 2.3 1 1 1 2 2 2 0 Transposase HTH_Crp_2 PF13545.6 gi|20090390|ref|NP_616465.1| - 0.029 14.3 0.0 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|20090390|ref|NP_616465.1| - 0.042 13.6 0.0 6 6.8 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|20090390|ref|NP_616465.1| - 0.047 13.7 2.6 0.68 9.9 0.1 3.4 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|20090390|ref|NP_616465.1| - 0.062 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TetR_N PF00440.23 gi|20090390|ref|NP_616465.1| - 0.08 12.7 0.3 5 7.0 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family MarR PF01047.22 gi|20090390|ref|NP_616465.1| - 0.084 12.8 0.0 1 9.3 0.0 2.2 2 0 0 2 2 2 0 MarR family Terminase_5 PF06056.12 gi|20090390|ref|NP_616465.1| - 0.13 12.2 0.1 2.2 8.2 0.0 2.7 3 0 0 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) PKD_3 PF16820.5 gi|20090391|ref|NP_616466.1| - 0.03 14.1 0.1 0.046 13.5 0.1 1.3 1 1 0 1 1 1 0 PKD-like domain IstB_IS21 PF01695.17 gi|20090392|ref|NP_616467.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20090392|ref|NP_616467.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20090392|ref|NP_616467.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20090392|ref|NP_616467.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20090392|ref|NP_616467.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20090392|ref|NP_616467.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20090392|ref|NP_616467.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20090392|ref|NP_616467.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20090392|ref|NP_616467.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20090392|ref|NP_616467.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20090392|ref|NP_616467.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20090392|ref|NP_616467.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20090392|ref|NP_616467.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20090392|ref|NP_616467.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090392|ref|NP_616467.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20090392|ref|NP_616467.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20090392|ref|NP_616467.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20090392|ref|NP_616467.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20090392|ref|NP_616467.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20090393|ref|NP_616468.1| - 3.6e-24 85.2 0.0 6.4e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20090393|ref|NP_616468.1| - 1.7e-05 24.8 0.2 3.9e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|20090393|ref|NP_616468.1| - 7.7e-05 22.4 0.6 0.00045 19.9 0.0 2.5 2 1 1 3 3 3 1 Homeodomain-like domain rve_3 PF13683.6 gi|20090393|ref|NP_616468.1| - 8.4e-05 22.3 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.6 gi|20090393|ref|NP_616468.1| - 0.00018 21.2 0.2 0.00039 20.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090393|ref|NP_616468.1| - 0.00081 19.4 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_Tc3_1 PF11427.8 gi|20090393|ref|NP_616468.1| - 0.013 15.4 0.2 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.12 gi|20090393|ref|NP_616468.1| - 0.021 14.7 0.1 0.067 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20090393|ref|NP_616468.1| - 0.023 14.7 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|20090393|ref|NP_616468.1| - 0.024 14.2 0.1 0.064 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20090393|ref|NP_616468.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20090393|ref|NP_616468.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_28 PF13518.6 gi|20090393|ref|NP_616468.1| - 0.16 12.1 0.0 0.5 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4010 PF13194.6 gi|20090394|ref|NP_616469.1| - 0.011 15.4 3.0 0.4 10.3 0.0 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4010) GWT1 PF06423.12 gi|20090394|ref|NP_616469.1| - 0.066 13.3 3.2 0.12 12.5 2.4 1.9 1 1 1 2 2 2 0 GWT1 DUF5392 PF17370.2 gi|20090394|ref|NP_616469.1| - 0.073 13.2 0.1 0.073 13.2 0.1 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5392) TMEM220 PF15071.6 gi|20090394|ref|NP_616469.1| - 0.13 13.0 1.3 26 5.6 1.6 2.8 2 1 0 2 2 2 0 Transmembrane family 220, helix DUF4229 PF14012.6 gi|20090394|ref|NP_616469.1| - 0.17 12.0 18.0 2 8.6 3.8 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) LSR PF05624.14 gi|20090394|ref|NP_616469.1| - 0.19 11.7 0.1 0.19 11.7 0.1 3.0 4 0 0 4 4 4 0 Lipolysis stimulated receptor (LSR) DUF373 PF04123.13 gi|20090394|ref|NP_616469.1| - 1.6 8.1 7.9 0.14 11.6 3.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF2981 PF11200.8 gi|20090394|ref|NP_616469.1| - 4.3 7.0 7.1 7.4 6.2 7.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) DUF2070 PF09843.9 gi|20090394|ref|NP_616469.1| - 9.1 4.4 16.1 0.88 7.8 7.7 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|20090395|ref|NP_616470.1| - 9.3e-27 94.2 0.0 1.7e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090395|ref|NP_616470.1| - 4.8e-13 49.6 0.0 1.3e-07 31.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|20090395|ref|NP_616470.1| - 0.0018 19.0 0.2 0.0049 17.5 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|20090395|ref|NP_616470.1| - 0.0023 17.7 0.0 0.056 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|20090395|ref|NP_616470.1| - 0.0031 18.0 0.1 0.0064 17.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|20090395|ref|NP_616470.1| - 0.0043 16.8 0.2 0.012 15.4 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|20090395|ref|NP_616470.1| - 0.006 17.0 1.1 0.055 13.9 0.3 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|20090395|ref|NP_616470.1| - 0.021 15.2 0.0 0.035 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|20090395|ref|NP_616470.1| - 0.031 13.9 0.0 0.069 12.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|20090395|ref|NP_616470.1| - 0.036 13.1 0.2 3.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|20090395|ref|NP_616470.1| - 0.05 13.9 0.1 0.21 11.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|20090395|ref|NP_616470.1| - 0.063 13.2 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase BAT PF15915.5 gi|20090395|ref|NP_616470.1| - 0.066 13.1 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 GAF and HTH_10 associated domain AAA_29 PF13555.6 gi|20090395|ref|NP_616470.1| - 0.075 12.8 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|20090395|ref|NP_616470.1| - 0.17 11.4 0.0 0.38 10.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region NPCBM_assoc PF10633.9 gi|20090396|ref|NP_616471.1| - 2.7e-29 101.2 0.4 6.3e-07 29.6 0.0 4.6 4 1 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|20090396|ref|NP_616471.1| - 7.2e-09 35.8 5.1 0.00063 20.0 0.6 4.9 3 2 1 4 4 4 2 CARDB DUF11 PF01345.18 gi|20090396|ref|NP_616471.1| - 4e-08 33.4 0.6 0.035 14.4 0.0 4.0 4 1 0 4 4 4 3 Domain of unknown function DUF11 DUF4625 PF15418.6 gi|20090396|ref|NP_616471.1| - 1.5e-05 25.2 0.0 1 9.6 0.0 4.1 3 2 1 5 5 5 2 Domain of unknown function (DUF4625) fn3_5 PF06280.12 gi|20090396|ref|NP_616471.1| - 5.5e-05 23.8 1.0 1.8 9.3 0.1 5.2 2 2 2 4 4 4 1 Fn3-like domain DUF916 PF06030.12 gi|20090396|ref|NP_616471.1| - 0.00035 20.6 1.5 4.6 7.3 0.1 5.2 4 2 1 5 5 5 1 Bacterial protein of unknown function (DUF916) MG2 PF01835.19 gi|20090396|ref|NP_616471.1| - 0.0005 20.5 0.0 2 8.9 0.0 4.3 4 1 0 4 4 4 1 MG2 domain Fn3-like PF14310.6 gi|20090396|ref|NP_616471.1| - 0.00054 20.0 0.1 0.36 11.0 0.0 4.8 4 1 1 5 5 5 1 Fibronectin type III-like domain Transglut_N PF00868.20 gi|20090396|ref|NP_616471.1| - 0.0006 20.2 0.0 0.89 9.9 0.0 4.0 4 0 0 4 4 4 1 Transglutaminase family E1_DerP2_DerF2 PF02221.15 gi|20090396|ref|NP_616471.1| - 0.011 16.1 0.1 20 5.6 0.0 3.6 3 0 0 3 3 3 0 ML domain DoxA PF07680.11 gi|20090396|ref|NP_616471.1| - 0.033 14.1 0.0 2.4 8.1 0.0 3.4 3 1 1 4 4 4 0 TQO small subunit DoxA AP3B1_C PF14796.6 gi|20090396|ref|NP_616471.1| - 0.057 13.7 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal Mfa_like_1 PF13149.6 gi|20090396|ref|NP_616471.1| - 0.081 13.0 0.3 3.3 7.7 0.1 2.6 2 1 1 3 3 3 0 Fimbrillin-like Qn_am_d_aIII PF09099.10 gi|20090396|ref|NP_616471.1| - 0.13 12.7 0.2 12 6.4 0.0 3.3 3 0 0 3 3 3 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III ABC2_membrane_2 PF12679.7 gi|20090397|ref|NP_616472.1| - 1.4e-36 126.3 19.6 1.7e-36 126.0 19.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20090397|ref|NP_616472.1| - 8.9e-10 38.2 18.5 8.9e-10 38.2 18.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20090397|ref|NP_616472.1| - 0.00014 21.5 15.9 0.00014 21.5 15.9 2.4 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20090397|ref|NP_616472.1| - 0.0012 18.8 25.3 0.0014 18.6 18.0 3.0 2 1 1 3 3 3 1 ABC-2 family transporter protein Wzz PF02706.15 gi|20090397|ref|NP_616472.1| - 0.33 11.3 0.1 0.33 11.3 0.1 3.3 3 0 0 3 3 3 0 Chain length determinant protein CPP1-like PF11833.8 gi|20090397|ref|NP_616472.1| - 0.6 9.7 9.5 1.1 8.8 9.5 1.5 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like ABC2_membrane_2 PF12679.7 gi|20090398|ref|NP_616473.1| - 5.6e-35 121.0 13.3 1.5e-33 116.4 13.3 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20090398|ref|NP_616473.1| - 9.4e-08 32.2 13.9 1.9e-07 31.2 13.9 1.6 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20090398|ref|NP_616473.1| - 2.3e-05 24.1 16.3 2.3e-05 24.1 16.3 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20090398|ref|NP_616473.1| - 0.0004 19.6 25.0 0.0004 19.6 25.0 2.1 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|20090398|ref|NP_616473.1| - 0.0011 18.4 16.9 0.0011 18.4 16.9 2.0 3 0 0 3 3 3 1 ABC-2 type transporter DPPIV_N PF00930.21 gi|20090399|ref|NP_616474.1| - 6.3e-12 44.9 5.2 0.0039 16.0 0.0 6.5 2 2 4 6 6 6 5 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.12 gi|20090399|ref|NP_616474.1| - 1.3e-11 44.1 22.0 0.048 13.6 0.0 7.9 8 0 0 8 8 8 6 WD40-like Beta Propeller Repeat DUF5050 PF16472.5 gi|20090399|ref|NP_616474.1| - 2.6e-05 23.6 0.1 0.00012 21.4 0.1 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF5050) Proteasome_A_N PF10584.9 gi|20090399|ref|NP_616474.1| - 0.017 14.8 1.8 57 3.5 0.0 4.9 4 0 0 4 4 4 0 Proteasome subunit A N-terminal signature WW PF00397.26 gi|20090399|ref|NP_616474.1| - 0.14 12.2 0.5 5.4 7.2 0.0 2.8 2 0 0 2 2 2 0 WW domain PD40 PF07676.12 gi|20090401|ref|NP_616476.1| - 4.9e-08 32.7 15.7 0.044 13.7 0.0 6.7 7 0 0 7 7 7 3 WD40-like Beta Propeller Repeat DUF5050 PF16472.5 gi|20090401|ref|NP_616476.1| - 0.011 15.0 0.1 0.075 12.3 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5050) ABC2_membrane_2 PF12679.7 gi|20090402|ref|NP_616477.1| - 2.6e-30 105.7 15.8 3.5e-26 92.2 14.5 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20090402|ref|NP_616477.1| - 6.3e-11 42.0 27.9 8.3e-11 41.6 27.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20090402|ref|NP_616477.1| - 4.4e-05 23.1 16.2 4.4e-05 23.1 16.2 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|20090402|ref|NP_616477.1| - 0.00019 21.0 21.3 0.00019 21.0 21.3 2.7 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|20090402|ref|NP_616477.1| - 0.00078 19.4 12.9 0.00078 19.4 12.9 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein BCLP PF12304.8 gi|20090402|ref|NP_616477.1| - 0.0012 18.4 1.3 0.0018 17.9 0.3 1.7 1 1 0 1 1 1 1 Beta-casein like protein ABC2_membrane_2 PF12679.7 gi|20090403|ref|NP_616478.1| - 1.7e-30 106.3 18.6 4.6e-30 104.9 18.6 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20090403|ref|NP_616478.1| - 6.2e-08 32.1 27.0 6.2e-08 32.1 27.0 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20090403|ref|NP_616478.1| - 4.6e-05 23.1 18.0 4.6e-05 23.1 18.0 2.4 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20090403|ref|NP_616478.1| - 0.0017 18.3 20.3 0.0017 18.3 20.3 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein Cytochrome-c551 PF10643.9 gi|20090403|ref|NP_616478.1| - 4.5 6.8 9.9 7.4 6.1 9.9 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 ABC2_membrane_2 PF12679.7 gi|20090404|ref|NP_616479.1| - 3.1e-32 112.0 19.0 4.9e-32 111.4 19.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20090404|ref|NP_616479.1| - 2.7e-05 23.4 27.3 8.1e-05 21.9 27.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20090404|ref|NP_616479.1| - 0.0016 18.5 19.5 0.0016 18.5 19.5 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20090404|ref|NP_616479.1| - 2.7 7.5 31.6 0.3 10.6 25.0 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20090405|ref|NP_616480.1| - 6e-38 130.8 17.1 3.8e-37 128.1 17.1 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20090405|ref|NP_616480.1| - 6.4e-08 32.8 19.4 9.8e-08 32.1 14.0 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20090405|ref|NP_616480.1| - 2.8e-07 30.3 11.1 2.8e-07 30.3 11.1 3.0 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|20090405|ref|NP_616480.1| - 0.00022 20.7 26.7 0.00027 20.4 19.4 2.2 2 0 0 2 2 2 2 ABC-2 type transporter Mobilization_B PF17511.2 gi|20090405|ref|NP_616480.1| - 0.13 12.6 0.3 0.25 11.7 0.3 1.5 1 0 0 1 1 1 0 Mobilization protein B ABC2_membrane_3 PF12698.7 gi|20090405|ref|NP_616480.1| - 0.2 10.7 41.3 3.3 6.7 41.0 2.6 1 1 0 1 1 1 0 ABC-2 family transporter protein Fig1 PF12351.8 gi|20090405|ref|NP_616480.1| - 0.33 10.9 18.1 0.021 14.7 6.0 2.9 2 1 1 3 3 3 0 Ca2+ regulator and membrane fusion protein Fig1 UPF0542 PF15086.6 gi|20090405|ref|NP_616480.1| - 0.95 9.4 4.2 0.46 10.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 PD40 PF07676.12 gi|20090406|ref|NP_616481.1| - 6.5e-06 25.9 4.4 0.019 14.9 0.0 4.5 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat eIF2A PF08662.11 gi|20090406|ref|NP_616481.1| - 1.3e-05 25.2 2.2 0.0081 16.1 0.7 3.8 2 1 2 4 4 4 3 Eukaryotic translation initiation factor eIF2A ANAPC4_WD40 PF12894.7 gi|20090406|ref|NP_616481.1| - 1.7e-05 25.0 0.0 0.011 16.0 0.0 3.8 4 0 0 4 4 4 1 Anaphase-promoting complex subunit 4 WD40 domain DPPIV_N PF00930.21 gi|20090406|ref|NP_616481.1| - 5.1e-05 22.2 3.5 0.069 11.9 0.2 4.9 2 1 3 6 6 6 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Ion_trans_2 PF07885.16 gi|20090408|ref|NP_616483.1| - 1.8e-11 43.8 10.2 3.6e-11 42.9 10.2 1.6 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|20090408|ref|NP_616483.1| - 0.0033 16.7 4.4 0.0043 16.3 4.4 1.2 1 0 0 1 1 1 1 Ion transport protein DUF5326 PF17260.2 gi|20090408|ref|NP_616483.1| - 0.59 10.3 9.7 4.4 7.5 1.8 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5326) HTH_24 PF13412.6 gi|20090409|ref|NP_616484.1| - 3.1e-16 58.6 0.3 4.8e-08 32.4 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20090409|ref|NP_616484.1| - 3.5e-14 52.6 0.0 2.4e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|20090409|ref|NP_616484.1| - 5.6e-13 48.5 0.0 1.6e-05 24.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|20090409|ref|NP_616484.1| - 6.3e-06 26.0 0.2 0.074 12.9 0.1 2.3 1 1 1 2 2 2 2 TFIIE alpha subunit MarR_2 PF12802.7 gi|20090409|ref|NP_616484.1| - 8.2e-06 25.6 0.0 0.12 12.2 0.0 2.5 3 0 0 3 3 2 2 MarR family HTH_Crp_2 PF13545.6 gi|20090409|ref|NP_616484.1| - 2.8e-05 24.0 0.0 0.01 15.8 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|20090409|ref|NP_616484.1| - 3.4e-05 23.9 0.4 0.41 10.9 0.0 2.6 3 0 0 3 3 2 2 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|20090409|ref|NP_616484.1| - 5.2e-05 22.8 0.0 0.03 14.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|20090409|ref|NP_616484.1| - 5.4e-05 23.0 0.0 0.25 11.3 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_12 PF08461.10 gi|20090409|ref|NP_616484.1| - 0.00019 21.3 0.1 0.006 16.5 0.0 2.4 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.12 gi|20090409|ref|NP_616484.1| - 0.00021 21.4 0.0 0.52 10.5 0.0 2.4 2 0 0 2 2 2 2 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|20090409|ref|NP_616484.1| - 0.00028 20.7 0.0 0.02 14.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|20090409|ref|NP_616484.1| - 0.00076 19.2 0.0 0.029 14.1 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|20090409|ref|NP_616484.1| - 0.0013 18.6 0.0 0.9 9.5 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.12 gi|20090409|ref|NP_616484.1| - 0.0015 18.3 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 2 HTH DNA binding domain HTH_IclR PF09339.10 gi|20090409|ref|NP_616484.1| - 0.0021 17.8 0.0 0.22 11.3 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|20090409|ref|NP_616484.1| - 0.0046 17.3 0.0 0.99 9.8 0.0 2.3 1 1 1 2 2 2 1 Penicillinase repressor Rrf2 PF02082.20 gi|20090409|ref|NP_616484.1| - 0.0067 16.8 0.0 5.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator GntR PF00392.21 gi|20090409|ref|NP_616484.1| - 0.011 15.4 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|20090409|ref|NP_616484.1| - 0.011 15.7 0.3 2.7 8.1 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|20090409|ref|NP_616484.1| - 0.011 16.0 0.2 3.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Mnd1 PF03962.15 gi|20090409|ref|NP_616484.1| - 0.018 15.3 0.0 0.045 14.1 0.0 1.7 1 0 0 1 1 1 0 Mnd1 HTH domain TetR_C_2 PF08361.11 gi|20090409|ref|NP_616484.1| - 0.021 14.9 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Sulfolobus_pRN PF05584.11 gi|20090409|ref|NP_616484.1| - 0.032 14.3 0.0 0.074 13.1 0.0 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein RP-C PF03428.13 gi|20090409|ref|NP_616484.1| - 0.039 13.6 0.0 3.9 7.1 0.0 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_CodY PF08222.11 gi|20090409|ref|NP_616484.1| - 0.045 13.3 0.1 1.4 8.6 0.0 2.8 2 1 1 3 3 3 0 CodY helix-turn-helix domain NUMOD1 PF07453.13 gi|20090409|ref|NP_616484.1| - 0.053 13.8 0.1 0.29 11.4 0.0 2.2 2 0 0 2 2 2 0 NUMOD1 domain HTH_30 PF13556.6 gi|20090409|ref|NP_616484.1| - 0.085 12.7 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain FaeA PF04703.12 gi|20090409|ref|NP_616484.1| - 0.12 12.8 0.0 11 6.5 0.0 2.3 2 0 0 2 2 2 0 FaeA-like protein HTH_8 PF02954.19 gi|20090409|ref|NP_616484.1| - 0.12 12.2 0.0 0.61 9.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Mrr_N PF14338.6 gi|20090409|ref|NP_616484.1| - 0.14 12.3 0.0 0.4 10.8 0.0 1.7 2 0 0 2 2 2 0 Mrr N-terminal domain PPC PF04151.15 gi|20090410|ref|NP_616485.1| - 0.001 20.1 0.5 0.001 20.1 0.5 1.7 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain Yip1 PF04893.17 gi|20090411|ref|NP_616486.1| - 1.2e-30 106.4 17.5 1.6e-30 106.0 17.5 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|20090411|ref|NP_616486.1| - 6.3e-06 26.1 12.8 2.5e-05 24.1 12.8 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) Putative_PNPOx PF01243.20 gi|20090412|ref|NP_616487.1| - 5.6e-16 58.5 0.0 6.8e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|20090412|ref|NP_616487.1| - 0.0051 16.4 0.0 0.0066 16.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF447 PF04289.12 gi|20090412|ref|NP_616487.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Phage_integrase PF00589.22 gi|20090413|ref|NP_616488.1| - 6.5e-08 32.6 0.0 1.5e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 gi|20090413|ref|NP_616488.1| - 5e-06 26.5 0.9 0.00057 19.8 0.1 2.8 2 1 0 3 3 3 2 Archaeal phage integrase Phage_int_SAM_1 PF02899.17 gi|20090413|ref|NP_616488.1| - 4.2e-05 23.8 1.5 0.0058 16.9 0.1 4.2 4 1 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|20090413|ref|NP_616488.1| - 0.012 16.1 0.0 9.8 6.7 0.0 3.2 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain Dynamin_N PF00350.23 gi|20090413|ref|NP_616488.1| - 0.23 11.5 3.5 0.19 11.8 0.6 2.1 2 0 0 2 2 2 0 Dynamin family bacHORMA_1 PF18138.1 gi|20090413|ref|NP_616488.1| - 0.35 10.7 2.0 0.27 11.1 0.2 1.7 2 0 0 2 2 2 0 Bacterial HORMA domain family 1 HTH_24 PF13412.6 gi|20090414|ref|NP_616489.1| - 0.0073 15.8 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 gi|20090414|ref|NP_616489.1| - 0.014 14.8 0.0 0.044 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_6 PF01418.17 gi|20090414|ref|NP_616489.1| - 0.023 14.7 0.2 0.088 12.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family TrmB PF01978.19 gi|20090414|ref|NP_616489.1| - 0.036 14.0 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB VirE_N PF08800.10 gi|20090414|ref|NP_616489.1| - 0.037 14.1 0.0 0.13 12.4 0.0 1.9 1 0 0 1 1 1 0 VirE N-terminal domain Phage_TAC_8 PF10666.9 gi|20090415|ref|NP_616490.1| - 0.14 12.4 0.0 0.26 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage tail assembly chaperone protein Gp14 ()A118 DUF3597 PF12200.8 gi|20090416|ref|NP_616491.1| - 0.014 16.0 0.0 0.019 15.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3597) HTH_3 PF01381.22 gi|20090417|ref|NP_616492.1| - 0.05 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_23 PF13384.6 gi|20090417|ref|NP_616492.1| - 0.1 12.4 0.0 0.3 10.9 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain PhoH PF02562.16 gi|20090417|ref|NP_616492.1| - 0.17 11.3 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein HTH_24 PF13412.6 gi|20090418|ref|NP_616493.1| - 9.4e-05 21.9 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|20090418|ref|NP_616493.1| - 0.0013 18.8 0.0 0.0022 18.0 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|20090418|ref|NP_616493.1| - 0.0029 17.4 0.0 0.0049 16.7 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|20090418|ref|NP_616493.1| - 0.0053 16.7 0.2 0.0073 16.2 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|20090418|ref|NP_616493.1| - 0.0056 16.5 0.0 0.0063 16.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20090418|ref|NP_616493.1| - 0.0068 16.9 0.0 0.0077 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|20090418|ref|NP_616493.1| - 0.01 15.8 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain THOC7 PF05615.13 gi|20090418|ref|NP_616493.1| - 0.013 15.8 2.8 0.016 15.4 2.8 1.2 1 0 0 1 1 1 0 Tho complex subunit 7 HTH_IclR PF09339.10 gi|20090418|ref|NP_616493.1| - 0.014 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|20090418|ref|NP_616493.1| - 0.015 15.2 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|20090418|ref|NP_616493.1| - 0.016 15.1 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|20090418|ref|NP_616493.1| - 0.025 14.9 0.0 0.038 14.3 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PaaX PF07848.12 gi|20090418|ref|NP_616493.1| - 0.025 14.8 0.0 0.033 14.4 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein FeoC PF09012.10 gi|20090418|ref|NP_616493.1| - 0.028 14.5 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF2582 PF10771.9 gi|20090418|ref|NP_616493.1| - 0.035 14.2 0.0 0.045 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) GntR PF00392.21 gi|20090418|ref|NP_616493.1| - 0.045 13.4 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|20090418|ref|NP_616493.1| - 0.047 13.6 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain HHH_6 PF14579.6 gi|20090418|ref|NP_616493.1| - 0.052 13.8 0.3 0.062 13.6 0.3 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_9 PF08221.11 gi|20090418|ref|NP_616493.1| - 0.054 13.6 0.0 0.078 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain IFT20 PF14931.6 gi|20090418|ref|NP_616493.1| - 0.063 13.5 2.3 0.077 13.2 2.3 1.1 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 WXG100 PF06013.12 gi|20090418|ref|NP_616493.1| - 0.065 13.5 0.6 6.5 7.1 0.1 2.1 2 0 0 2 2 2 0 Proteins of 100 residues with WXG RPA_C PF08784.11 gi|20090418|ref|NP_616493.1| - 0.065 13.9 0.0 0.089 13.5 0.0 1.3 1 1 0 1 1 1 0 Replication protein A C terminal PCI PF01399.27 gi|20090418|ref|NP_616493.1| - 0.066 13.7 0.0 0.079 13.5 0.0 1.3 1 1 0 1 1 1 0 PCI domain LexA_DNA_bind PF01726.16 gi|20090418|ref|NP_616493.1| - 0.07 12.9 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_40 PF14493.6 gi|20090418|ref|NP_616493.1| - 0.072 13.6 0.1 0.32 11.5 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain YtxH PF12732.7 gi|20090418|ref|NP_616493.1| - 0.096 13.2 1.5 0.17 12.4 1.5 1.6 1 1 0 1 1 1 0 YtxH-like protein Med9 PF07544.13 gi|20090418|ref|NP_616493.1| - 0.11 12.7 1.9 0.27 11.4 0.2 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Fe_dep_repress PF01325.19 gi|20090418|ref|NP_616493.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|20090418|ref|NP_616493.1| - 0.16 11.7 2.2 1.1 9.0 0.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) DUF2718 PF10918.8 gi|20090419|ref|NP_616494.1| - 0.44 11.1 2.3 1.4 9.4 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2718) Guanylate_cyc PF00211.20 gi|20090420|ref|NP_616495.1| - 2.3e-11 43.6 0.2 4.2e-11 42.8 0.2 1.4 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain FtsH_ext PF06480.15 gi|20090420|ref|NP_616495.1| - 0.038 14.4 1.7 1 9.7 0.2 2.8 3 0 0 3 3 3 0 FtsH Extracellular Sec10 PF07393.11 gi|20090421|ref|NP_616496.1| - 0.64 8.4 3.9 1.1 7.6 0.4 2.0 2 0 0 2 2 2 0 Exocyst complex component Sec10 Orthopox_B11R PF07033.11 gi|20090422|ref|NP_616497.1| - 1.2 8.9 4.8 15 5.5 1.2 2.6 1 1 1 2 2 2 0 Orthopoxvirus B11R protein SNO PF01174.19 gi|20090424|ref|NP_616499.1| - 6.4e-52 176.1 0.0 7.2e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|20090424|ref|NP_616499.1| - 1e-11 44.8 0.0 1.4e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|20090424|ref|NP_616499.1| - 7.1e-10 39.0 0.0 9e-08 32.1 0.0 2.1 2 0 0 2 2 2 2 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|20090424|ref|NP_616499.1| - 1.1e-08 35.0 0.0 1.3e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|20090424|ref|NP_616499.1| - 0.0011 18.8 0.6 0.0017 18.1 0.6 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.9 gi|20090424|ref|NP_616499.1| - 0.0025 17.0 0.0 0.0051 15.9 0.0 1.5 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal Peptidase_C26 PF07722.13 gi|20090424|ref|NP_616499.1| - 0.031 14.1 0.1 0.21 11.3 0.1 2.4 2 1 0 2 2 2 0 Peptidase C26 SOR_SNZ PF01680.17 gi|20090425|ref|NP_616500.1| - 2.1e-104 347.8 9.6 2.9e-104 347.3 9.6 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|20090425|ref|NP_616500.1| - 1.6e-12 47.3 8.8 7.7e-08 32.0 1.9 2.9 2 1 1 3 3 3 2 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|20090425|ref|NP_616500.1| - 0.00075 18.7 0.5 0.045 12.9 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.17 gi|20090425|ref|NP_616500.1| - 0.00099 18.3 2.1 0.31 10.1 0.2 2.7 2 2 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|20090425|ref|NP_616500.1| - 0.001 18.3 4.5 0.019 14.1 0.2 3.0 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase TetR_C_27 PF17935.1 gi|20090425|ref|NP_616500.1| - 0.0011 18.9 0.1 0.044 13.8 0.0 2.7 3 0 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain ABC_sub_bind PF04392.12 gi|20090425|ref|NP_616500.1| - 0.0016 17.8 0.5 0.0016 17.8 0.5 1.7 2 0 0 2 2 2 1 ABC transporter substrate binding protein IGPS PF00218.21 gi|20090425|ref|NP_616500.1| - 0.0029 16.8 0.1 0.083 12.0 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|20090425|ref|NP_616500.1| - 0.0077 15.7 1.0 0.0077 15.7 1.0 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase OMPdecase PF00215.24 gi|20090425|ref|NP_616500.1| - 0.014 15.0 1.7 0.71 9.4 0.0 2.5 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Cucumopine_C PF18631.1 gi|20090425|ref|NP_616500.1| - 0.019 14.9 0.2 0.054 13.4 0.0 1.8 2 0 0 2 2 2 0 Cucumopine synthase C-terminal helical bundle domain His_biosynth PF00977.21 gi|20090425|ref|NP_616500.1| - 0.026 14.0 0.3 0.3 10.5 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein MCM_lid PF17855.1 gi|20090425|ref|NP_616500.1| - 0.18 12.2 0.9 9.1 6.8 0.0 3.0 2 1 1 3 3 3 0 MCM AAA-lid domain PGF-CTERM PF18204.1 gi|20090426|ref|NP_616501.1| - 0.015 15.3 0.2 0.037 14.0 0.2 1.7 1 0 0 1 1 1 0 PGF-CTERM motif PPC PF04151.15 gi|20090426|ref|NP_616501.1| - 0.058 14.5 0.2 0.2 12.8 0.2 1.9 1 0 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Sigma70_r4 PF04545.16 gi|20090426|ref|NP_616501.1| - 0.19 11.3 0.7 2.3 7.8 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 PAP2 PF01569.21 gi|20090427|ref|NP_616502.1| - 1.8e-17 63.4 0.1 1.8e-17 63.4 0.1 2.8 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|20090427|ref|NP_616502.1| - 5.8e-11 42.4 0.5 5.8e-11 42.4 0.5 1.9 2 1 0 2 2 2 1 PAP2 superfamily DLH PF01738.18 gi|20090429|ref|NP_616504.1| - 3.5e-33 115.0 0.1 1.3e-25 90.3 0.0 2.0 1 1 1 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|20090429|ref|NP_616504.1| - 4.4e-10 39.4 0.0 5.2e-06 26.1 0.0 2.7 2 1 1 3 3 3 2 Prolyl oligopeptidase family Chlorophyllase PF07224.11 gi|20090429|ref|NP_616504.1| - 8.2e-09 34.9 0.0 1.6e-08 34.0 0.0 1.5 2 0 0 2 2 2 1 Chlorophyllase Chlorophyllase2 PF12740.7 gi|20090429|ref|NP_616504.1| - 3.6e-08 32.6 0.0 5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Hydrolase_4 PF12146.8 gi|20090429|ref|NP_616504.1| - 1.2e-05 24.8 0.0 0.018 14.3 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 gi|20090429|ref|NP_616504.1| - 0.00091 19.1 0.0 0.12 12.3 0.0 2.2 1 1 0 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|20090429|ref|NP_616504.1| - 0.0013 18.7 0.0 0.049 13.6 0.0 2.6 2 1 1 3 3 3 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.20 gi|20090429|ref|NP_616504.1| - 0.0025 17.5 0.0 1.3 8.6 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|20090429|ref|NP_616504.1| - 0.0041 17.7 0.0 0.011 16.3 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|20090429|ref|NP_616504.1| - 0.0062 16.4 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.13 gi|20090429|ref|NP_616504.1| - 0.0089 14.6 0.0 0.039 12.4 0.0 1.8 1 1 1 2 2 2 1 Platelet-activating factor acetylhydrolase, isoform II PilX_N PF14341.6 gi|20090429|ref|NP_616504.1| - 0.11 12.5 0.2 0.23 11.5 0.2 1.5 1 0 0 1 1 1 0 PilX N-terminal DUF4713 PF15831.5 gi|20090429|ref|NP_616504.1| - 0.61 10.6 2.9 0.96 9.9 2.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4713) YdjM PF04307.14 gi|20090430|ref|NP_616505.1| - 7.4e-22 77.5 5.8 9.7e-22 77.1 5.8 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase YdjM PF04307.14 gi|20090431|ref|NP_616506.1| - 2.2e-19 69.4 2.1 3.4e-19 68.8 2.1 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Sod_Fe_C PF02777.18 gi|20090432|ref|NP_616507.1| - 1.3e-32 112.0 0.2 2.5e-32 111.1 0.1 1.5 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|20090432|ref|NP_616507.1| - 6.5e-28 97.0 2.0 1.1e-27 96.3 2.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain RP1-2 PF12042.8 gi|20090432|ref|NP_616507.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain SnoaL PF07366.12 gi|20090433|ref|NP_616508.1| - 3e-41 140.1 0.1 3.6e-41 139.9 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|20090433|ref|NP_616508.1| - 9.3e-15 55.1 0.2 1.2e-14 54.7 0.2 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|20090433|ref|NP_616508.1| - 0.0032 17.8 0.0 0.0053 17.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) DUF2315 PF10231.9 gi|20090433|ref|NP_616508.1| - 0.024 14.7 0.1 0.034 14.2 0.1 1.2 1 0 0 1 1 1 0 Apoptogenic protein 1 SnoaL_3 PF13474.6 gi|20090433|ref|NP_616508.1| - 0.097 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain YdjM PF04307.14 gi|20090434|ref|NP_616509.1| - 1.4e-20 73.3 7.1 1.9e-20 72.9 7.1 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4267 PF14087.6 gi|20090434|ref|NP_616509.1| - 0.057 13.5 0.8 0.13 12.3 0.2 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4267) Mg-por_mtran_C PF07109.11 gi|20090435|ref|NP_616510.1| - 4.5e-10 39.8 3.0 0.2 12.0 0.0 5.7 2 1 4 6 6 6 3 Magnesium-protoporphyrin IX methyltransferase C-terminus Mistic PF11458.8 gi|20090435|ref|NP_616510.1| - 1.7e-05 24.7 10.1 0.3 11.1 0.1 6.3 2 1 4 6 6 6 1 Membrane-integrating protein Mistic Clp_N PF02861.20 gi|20090435|ref|NP_616510.1| - 4.5e-05 23.5 1.5 24 5.1 0.1 6.0 6 1 1 7 7 7 0 Clp amino terminal domain, pathogenicity island component SNAP PF14938.6 gi|20090435|ref|NP_616510.1| - 0.00023 20.7 1.9 0.019 14.4 0.6 3.3 1 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP HTH_7 PF02796.15 gi|20090435|ref|NP_616510.1| - 0.00051 20.0 1.9 35 4.6 0.0 5.0 5 0 0 5 5 5 0 Helix-turn-helix domain of resolvase DUF1828 PF08861.10 gi|20090435|ref|NP_616510.1| - 0.0019 18.4 0.0 38 4.6 0.0 5.2 3 2 3 6 6 6 0 Domain of unknown function DUF1828 MIT PF04212.18 gi|20090435|ref|NP_616510.1| - 0.012 15.6 0.0 56 3.9 0.0 5.1 5 1 1 6 6 6 0 MIT (microtubule interacting and transport) domain DUF4898 PF16239.5 gi|20090435|ref|NP_616510.1| - 0.02 14.8 0.0 13 5.9 0.0 4.4 6 0 0 6 6 6 0 Domain of unknown function (DUF4898) Ntox46 PF15538.6 gi|20090435|ref|NP_616510.1| - 0.03 14.3 1.2 72 3.3 0.0 4.4 1 1 4 5 5 5 0 Bacterial toxin 46 Phage_Gp15 PF06854.11 gi|20090435|ref|NP_616510.1| - 0.036 14.0 0.1 2.1 8.3 0.0 2.5 1 1 1 2 2 2 0 Bacteriophage Gp15 protein Melibiase_C PF17801.1 gi|20090435|ref|NP_616510.1| - 0.12 12.5 0.0 83 3.4 0.0 3.9 4 0 0 4 4 4 0 Alpha galactosidase C-terminal beta sandwich domain DUF1890 PF09001.11 gi|20090435|ref|NP_616510.1| - 0.16 12.3 0.1 0.51 10.7 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) IstB_IS21 PF01695.17 gi|20090436|ref|NP_616511.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20090436|ref|NP_616511.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20090436|ref|NP_616511.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20090436|ref|NP_616511.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20090436|ref|NP_616511.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20090436|ref|NP_616511.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20090436|ref|NP_616511.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20090436|ref|NP_616511.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20090436|ref|NP_616511.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20090436|ref|NP_616511.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20090436|ref|NP_616511.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20090436|ref|NP_616511.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20090436|ref|NP_616511.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20090436|ref|NP_616511.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090436|ref|NP_616511.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20090436|ref|NP_616511.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20090436|ref|NP_616511.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20090436|ref|NP_616511.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20090436|ref|NP_616511.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20090437|ref|NP_616512.1| - 4.3e-24 85.0 0.0 7.5e-24 84.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20090437|ref|NP_616512.1| - 1.8e-05 24.7 0.2 3.9e-05 23.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.6 gi|20090437|ref|NP_616512.1| - 3.1e-05 23.6 0.0 6.8e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090437|ref|NP_616512.1| - 0.00013 21.6 0.0 0.00045 19.9 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|20090437|ref|NP_616512.1| - 0.0002 21.0 0.2 0.00039 20.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090437|ref|NP_616512.1| - 0.0053 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_Tc3_1 PF11427.8 gi|20090437|ref|NP_616512.1| - 0.013 15.3 0.2 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.12 gi|20090437|ref|NP_616512.1| - 0.021 14.7 0.0 0.067 13.1 0.0 1.8 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20090437|ref|NP_616512.1| - 0.023 14.7 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|20090437|ref|NP_616512.1| - 0.024 14.1 0.1 0.064 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20090437|ref|NP_616512.1| - 0.11 12.2 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 rve_2 PF13333.6 gi|20090437|ref|NP_616512.1| - 0.11 12.7 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 Integrase core domain Phage_NinH PF06322.11 gi|20090437|ref|NP_616512.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein YolD PF08863.10 gi|20090438|ref|NP_616513.1| - 0.0036 17.3 0.5 0.0036 17.3 0.5 2.9 3 0 0 3 3 3 1 YolD-like protein DUF883 PF05957.13 gi|20090438|ref|NP_616513.1| - 0.0039 17.8 0.6 2.2 8.9 0.0 3.8 3 1 1 4 4 4 2 Bacterial protein of unknown function (DUF883) Baculo_PEP_C PF04513.12 gi|20090438|ref|NP_616513.1| - 0.032 14.3 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_7 PF02796.15 gi|20090438|ref|NP_616513.1| - 0.09 12.9 0.0 2.8 8.1 0.0 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Fucokinase PF07959.12 gi|20090438|ref|NP_616513.1| - 0.091 11.7 0.1 0.43 9.5 0.1 2.0 1 1 0 1 1 1 0 L-fucokinase T2SSF PF00482.23 gi|20090438|ref|NP_616513.1| - 0.092 12.7 1.4 1.9 8.5 0.2 2.9 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F Apolipoprotein PF01442.18 gi|20090438|ref|NP_616513.1| - 0.16 11.8 2.5 0.78 9.6 0.1 2.8 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.12 gi|20090438|ref|NP_616513.1| - 0.42 11.1 5.4 0.19 12.2 0.7 2.8 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein AAA_14 PF13173.6 gi|20090439|ref|NP_616514.1| - 1e-33 116.1 0.1 2.6e-33 114.8 0.1 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|20090439|ref|NP_616514.1| - 3.9e-11 43.2 0.2 7.7e-11 42.2 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|20090439|ref|NP_616514.1| - 8.7e-05 22.5 0.1 0.00023 21.1 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|20090439|ref|NP_616514.1| - 0.014 15.8 0.1 0.058 13.8 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|20090439|ref|NP_616514.1| - 0.037 14.5 0.0 0.09 13.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter BPL_LplA_LipB PF03099.19 gi|20090439|ref|NP_616514.1| - 0.12 12.3 0.1 0.68 9.9 0.0 2.0 2 0 0 2 2 2 0 Biotin/lipoate A/B protein ligase family Myb_DNA-bind_5 PF13873.6 gi|20090439|ref|NP_616514.1| - 0.12 12.4 0.3 0.31 11.1 0.3 1.6 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain TPR_12 PF13424.6 gi|20090440|ref|NP_616515.1| - 1.6e-33 114.8 38.0 5.3e-06 26.6 0.2 12.7 9 4 2 12 12 11 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090440|ref|NP_616515.1| - 2.2e-22 77.3 47.9 0.079 13.1 0.3 15.2 15 0 0 15 15 15 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090440|ref|NP_616515.1| - 8.9e-20 69.9 17.9 8.2e-05 22.4 0.3 12.5 14 0 0 14 14 14 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090440|ref|NP_616515.1| - 3.6e-19 67.3 27.1 0.4 10.8 0.1 14.9 16 0 0 16 16 15 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090440|ref|NP_616515.1| - 6.5e-19 66.9 46.9 0.018 14.9 0.4 14.6 14 1 0 14 14 14 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090440|ref|NP_616515.1| - 3.8e-18 64.6 14.0 0.97 10.4 0.0 14.2 15 2 0 15 15 14 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090440|ref|NP_616515.1| - 6e-16 57.3 56.4 0.009 16.2 0.4 15.3 16 0 0 16 16 16 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090440|ref|NP_616515.1| - 8.7e-12 44.9 24.7 4.6 8.1 0.1 14.2 13 2 0 13 13 13 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20090440|ref|NP_616515.1| - 6.5e-09 35.6 0.0 0.087 12.2 0.0 4.6 4 1 0 4 4 4 3 MalT-like TPR region TPR_19 PF14559.6 gi|20090440|ref|NP_616515.1| - 4.3e-08 33.6 23.7 0.27 11.8 0.5 11.4 10 4 4 14 14 12 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090440|ref|NP_616515.1| - 4.7e-07 29.7 12.0 0.9 10.1 0.1 9.6 12 1 0 12 12 7 2 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|20090440|ref|NP_616515.1| - 6.6e-06 25.5 7.3 5.2e-05 22.6 0.1 4.5 5 0 0 5 5 5 1 SHNi-TPR TOM20_plant PF06552.12 gi|20090440|ref|NP_616515.1| - 6.6e-05 22.7 12.1 0.95 9.2 0.8 6.0 5 2 1 6 6 6 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_16 PF13432.6 gi|20090440|ref|NP_616515.1| - 0.00081 20.0 10.7 32 5.3 0.0 9.4 9 3 1 10 10 8 0 Tetratricopeptide repeat Xpo1 PF08389.12 gi|20090440|ref|NP_616515.1| - 0.02 15.0 0.2 1.5 8.8 0.0 2.9 3 0 0 3 3 2 0 Exportin 1-like protein DUF2989 PF11207.8 gi|20090440|ref|NP_616515.1| - 0.028 14.2 7.8 1.7 8.4 0.2 4.6 4 2 2 6 6 6 0 Protein of unknown function (DUF2989) YfdX PF10938.8 gi|20090440|ref|NP_616515.1| - 0.044 13.7 5.2 15 5.5 0.0 3.8 2 1 0 2 2 2 0 YfdX protein Cytidylate_kin2 PF13189.6 gi|20090440|ref|NP_616515.1| - 0.08 13.1 0.6 0.27 11.3 0.6 2.0 1 0 0 1 1 1 0 Cytidylate kinase-like family Pinin_SDK_N PF04697.13 gi|20090440|ref|NP_616515.1| - 0.14 12.8 0.4 10 6.8 0.0 2.7 2 0 0 2 2 2 0 pinin/SDK conserved region TPR_9 PF13371.6 gi|20090440|ref|NP_616515.1| - 0.27 11.4 3.8 2.2 8.5 0.5 4.2 5 0 0 5 5 3 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|20090440|ref|NP_616515.1| - 0.48 10.1 14.5 3.8 7.2 0.0 5.8 6 1 0 6 6 5 0 26S proteasome subunit RPN7 MIT PF04212.18 gi|20090440|ref|NP_616515.1| - 1.4 9.1 0.0 1.4 9.1 0.0 7.8 9 1 1 10 10 10 0 MIT (microtubule interacting and transport) domain FUSC-like PF12805.7 gi|20090440|ref|NP_616515.1| - 1.9 7.5 4.1 4.4 6.3 0.9 2.8 2 1 0 2 2 2 0 FUSC-like inner membrane protein yccS TPR_11 PF13414.6 gi|20090440|ref|NP_616515.1| - 2 8.2 0.0 2 8.2 0.0 9.0 12 0 0 12 12 12 0 TPR repeat Sel1 PF08238.12 gi|20090440|ref|NP_616515.1| - 3 8.6 8.4 2.4 9.0 1.4 4.7 4 0 0 4 4 2 0 Sel1 repeat DNA_topoisoIV PF00521.20 gi|20090441|ref|NP_616516.1| - 2.4e-158 527.5 0.8 3.4e-158 527.0 0.8 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|20090441|ref|NP_616516.1| - 4.2e-77 253.4 13.2 5.5e-15 54.6 0.5 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller Rho_RNA_bind PF07497.12 gi|20090441|ref|NP_616516.1| - 0.033 14.1 0.2 0.37 10.7 0.2 2.5 2 1 0 2 2 2 0 Rho termination factor, RNA-binding domain DNA_gyraseB PF00204.25 gi|20090442|ref|NP_616517.1| - 1.4e-64 216.8 1.5 2.2e-64 216.1 1.5 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|20090442|ref|NP_616517.1| - 1.3e-31 108.6 1.1 2.4e-31 107.7 0.2 1.9 2 0 0 2 2 2 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|20090442|ref|NP_616517.1| - 6.9e-21 74.8 0.1 1.6e-20 73.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|20090442|ref|NP_616517.1| - 3.6e-18 65.7 0.0 1e-17 64.2 0.0 1.9 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|20090442|ref|NP_616517.1| - 0.0018 18.1 0.1 0.0053 16.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP6A_N PF04406.14 gi|20090444|ref|NP_616519.1| - 3.9e-14 52.4 0.2 7.6e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase BtpA PF03437.15 gi|20090444|ref|NP_616519.1| - 0.21 11.0 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 BtpA family Topo-VIb_trans PF09239.11 gi|20090445|ref|NP_616520.1| - 3.1e-66 222.1 0.0 5e-66 221.4 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|20090445|ref|NP_616520.1| - 2.2e-45 153.5 0.2 4.3e-45 152.5 0.2 1.5 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|20090445|ref|NP_616520.1| - 9.5e-11 42.2 0.0 2.3e-10 40.9 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|20090445|ref|NP_616520.1| - 7.9e-08 32.2 0.0 1.6e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MAF_flag10 PF01973.18 gi|20090445|ref|NP_616520.1| - 0.0095 15.7 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF115 FbpA PF05833.11 gi|20090445|ref|NP_616520.1| - 0.029 13.1 0.0 0.059 12.1 0.0 1.5 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) AsnC_trans_reg PF01037.21 gi|20090446|ref|NP_616521.1| - 7.8e-11 41.8 0.2 9e-11 41.6 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|20090446|ref|NP_616521.1| - 2.8e-06 27.2 0.0 3.4e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.6 gi|20090446|ref|NP_616521.1| - 0.03 14.9 0.1 0.63 10.7 0.1 2.0 2 0 0 2 2 2 0 ACT domain NapD PF03927.13 gi|20090446|ref|NP_616521.1| - 0.039 14.0 0.2 0.045 13.8 0.2 1.1 1 0 0 1 1 1 0 NapD protein MIase PF02426.16 gi|20090446|ref|NP_616521.1| - 0.079 13.1 0.0 0.093 12.9 0.0 1.2 1 0 0 1 1 1 0 Muconolactone delta-isomerase UPF0228 PF05727.11 gi|20090447|ref|NP_616522.1| - 4.8e-53 178.2 6.9 6.5e-53 177.8 6.0 1.6 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0228) Lactonase PF10282.9 gi|20090448|ref|NP_616523.1| - 4.6e-12 45.9 5.1 0.00079 18.8 0.1 4.0 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|20090448|ref|NP_616523.1| - 1.6e-08 33.5 2.9 0.00044 18.9 0.1 3.0 1 1 2 3 3 3 3 Cytochrome D1 heme domain NHL PF01436.21 gi|20090448|ref|NP_616523.1| - 2.2e-08 33.7 7.6 0.088 12.9 0.0 5.7 6 0 0 6 6 6 4 NHL repeat PD40 PF07676.12 gi|20090448|ref|NP_616523.1| - 4.4e-07 29.7 0.8 1.7 8.7 0.1 4.5 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat DUF1513 PF07433.11 gi|20090448|ref|NP_616523.1| - 0.024 13.7 3.3 0.96 8.5 0.1 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF1513) Arylesterase PF01731.20 gi|20090448|ref|NP_616523.1| - 0.039 14.2 3.5 42 4.4 0.0 4.5 2 1 3 5 5 5 0 Arylesterase Frtz PF11768.8 gi|20090448|ref|NP_616523.1| - 0.15 10.4 0.1 1.3 7.3 0.0 2.2 2 1 1 3 3 3 0 WD repeat-containing and planar cell polarity effector protein Fritz Cytochrom_D1 PF02239.16 gi|20090449|ref|NP_616524.1| - 1.1e-16 60.4 6.0 1.8e-07 30.1 0.4 3.4 1 1 0 3 3 3 3 Cytochrome D1 heme domain SGL PF08450.12 gi|20090449|ref|NP_616524.1| - 7.8e-14 51.8 9.0 2.6e-05 24.0 0.4 4.0 1 1 3 4 4 4 4 SMP-30/Gluconolactonase/LRE-like region Lactonase PF10282.9 gi|20090449|ref|NP_616524.1| - 3.3e-13 49.6 9.2 0.00037 19.9 0.2 3.4 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller PD40 PF07676.12 gi|20090449|ref|NP_616524.1| - 3.8e-11 42.6 0.5 1 9.4 0.0 5.8 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat Arylesterase PF01731.20 gi|20090449|ref|NP_616524.1| - 9.6e-09 35.3 12.9 0.67 10.2 0.1 6.3 2 2 4 6 6 6 4 Arylesterase Arm-DNA-bind_3 PF13356.6 gi|20090449|ref|NP_616524.1| - 2.9e-07 30.8 0.0 2.6 8.5 0.0 5.0 1 1 3 4 4 4 1 Arm DNA-binding domain NHL PF01436.21 gi|20090449|ref|NP_616524.1| - 4.8e-07 29.5 7.4 2.7 8.2 0.0 6.7 7 0 0 7 7 6 2 NHL repeat Str_synth PF03088.16 gi|20090449|ref|NP_616524.1| - 2.7e-05 24.2 0.4 46 4.2 0.0 5.9 2 2 4 6 6 6 0 Strictosidine synthase SBP56 PF05694.11 gi|20090449|ref|NP_616524.1| - 0.00046 19.1 0.1 8.6 5.1 0.0 4.8 1 1 4 5 5 5 1 56kDa selenium binding protein (SBP56) DUF1513 PF07433.11 gi|20090449|ref|NP_616524.1| - 0.0026 16.9 0.8 2.2 7.3 0.0 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF1513) ThaI PF15514.6 gi|20090449|ref|NP_616524.1| - 0.004 16.9 3.2 2.3 7.8 0.1 4.2 2 2 4 6 6 6 2 Restriction endonuclease ThaI PBCV_basic_adap PF08789.10 gi|20090449|ref|NP_616524.1| - 9.6 6.4 8.3 1.2e+02 2.9 0.0 4.1 4 0 0 4 4 4 0 PBCV-specific basic adaptor domain Inhibitor_I42 PF09394.10 gi|20090451|ref|NP_616526.1| - 8.7e-26 90.2 1.1 1.4e-25 89.5 1.1 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 PA26 PF04636.13 gi|20090451|ref|NP_616526.1| - 0.033 13.1 0.1 0.036 13.0 0.1 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) ABC_tran PF00005.27 gi|20090454|ref|NP_616529.1| - 1.2e-31 110.1 0.0 2e-31 109.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090454|ref|NP_616529.1| - 1.9e-11 44.3 0.5 3.9e-06 26.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20090454|ref|NP_616529.1| - 0.00048 20.7 3.9 0.00097 19.7 3.9 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|20090454|ref|NP_616529.1| - 0.003 16.3 0.1 1.6 7.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.6 gi|20090454|ref|NP_616529.1| - 0.0072 17.0 0.1 0.018 15.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) DUF4754 PF15946.5 gi|20090454|ref|NP_616529.1| - 0.04 14.2 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4754) ABC2_membrane PF01061.24 gi|20090455|ref|NP_616530.1| - 4.1e-24 85.2 19.4 4.1e-24 85.2 19.4 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20090455|ref|NP_616530.1| - 1e-11 44.6 27.7 1e-11 44.6 27.7 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20090455|ref|NP_616530.1| - 0.0048 16.2 21.4 0.0058 16.0 16.1 2.1 1 1 0 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.13 gi|20090455|ref|NP_616530.1| - 0.0065 16.0 6.8 0.0089 15.6 6.8 1.2 1 0 0 1 1 1 1 CcmB protein FtsX_ECD PF18075.1 gi|20090456|ref|NP_616531.1| - 0.082 13.5 0.1 0.1 13.2 0.1 1.4 1 1 0 1 1 1 0 FtsX extracellular domain Inhibitor_I42 PF09394.10 gi|20090457|ref|NP_616532.1| - 7.1e-23 80.8 0.9 1.5e-22 79.8 0.9 1.5 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 PA26 PF04636.13 gi|20090457|ref|NP_616532.1| - 0.014 14.3 0.1 0.017 14.1 0.1 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) FAM176 PF14851.6 gi|20090457|ref|NP_616532.1| - 0.017 14.8 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 FAM176 family HicB_lk_antitox PF15919.5 gi|20090458|ref|NP_616533.1| - 3.1e-06 27.3 0.1 3.3e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system PHD_like PF12910.7 gi|20090458|ref|NP_616533.1| - 0.00031 20.8 0.1 0.00035 20.6 0.1 1.1 1 0 0 1 1 1 1 Antitoxin of toxin-antitoxin, RelE / RelB, TA system TPR_11 PF13414.6 gi|20090458|ref|NP_616533.1| - 0.028 14.1 0.6 0.041 13.6 0.6 1.3 1 0 0 1 1 1 0 TPR repeat NUDIX PF00293.28 gi|20090460|ref|NP_616535.1| - 2.1e-14 53.7 0.0 2.5e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|20090460|ref|NP_616535.1| - 1.2e-10 41.4 0.0 1.4e-10 41.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.6 gi|20090460|ref|NP_616535.1| - 0.011 15.4 0.1 0.013 15.1 0.1 1.1 1 0 0 1 1 1 0 Nucleotide hydrolase Glyco_hydro_18 PF00704.28 gi|20090460|ref|NP_616535.1| - 0.014 15.1 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 18 ResIII PF04851.15 gi|20090461|ref|NP_616536.1| - 1.2e-31 110.0 0.0 2.8e-31 108.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3427 PF11907.8 gi|20090461|ref|NP_616536.1| - 4.7e-18 65.5 0.0 1.4e-17 63.9 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) Helicase_C PF00271.31 gi|20090461|ref|NP_616536.1| - 4.8e-14 52.6 1.4 5.8e-13 49.2 0.1 3.5 5 0 0 5 5 5 1 Helicase conserved C-terminal domain PLDc_2 PF13091.6 gi|20090461|ref|NP_616536.1| - 5.3e-14 52.2 0.1 1.4e-13 50.9 0.1 1.7 1 0 0 1 1 1 1 PLD-like domain SWI2_SNF2 PF18766.1 gi|20090461|ref|NP_616536.1| - 6.2e-08 32.6 0.1 1.6e-07 31.2 0.1 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase RE_NgoFVII PF09565.10 gi|20090461|ref|NP_616536.1| - 0.00019 20.9 0.0 0.00048 19.5 0.0 1.6 1 0 0 1 1 1 1 NgoFVII restriction endonuclease DEAD PF00270.29 gi|20090461|ref|NP_616536.1| - 0.00041 20.1 0.0 0.0017 18.1 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF3427 PF11907.8 gi|20090462|ref|NP_616537.1| - 6.2e-19 68.3 0.2 6.7e-19 68.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) Filo_glycop PF01611.16 gi|20090462|ref|NP_616537.1| - 0.079 11.9 0.0 0.087 11.7 0.0 1.0 1 0 0 1 1 1 0 Filovirus glycoprotein DUF3458_C PF17432.2 gi|20090463|ref|NP_616538.1| - 5e-32 111.5 2.7 8e-32 110.9 2.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3458_C) ARM repeats Peptidase_M1 PF01433.20 gi|20090463|ref|NP_616538.1| - 2.5e-28 99.2 0.0 4.7e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain DUF3458 PF11940.8 gi|20090463|ref|NP_616538.1| - 2.9e-12 46.8 0.0 7.7e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Ig-like fold Peptidase_M1_N PF17900.1 gi|20090463|ref|NP_616538.1| - 4.2e-08 33.6 0.0 8.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain DUF1622 PF07784.11 gi|20090464|ref|NP_616539.1| - 3.3e-22 78.2 0.4 4.5e-22 77.7 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) DUF1622 PF07784.11 gi|20090465|ref|NP_616540.1| - 3.8e-22 78.0 0.5 5.5e-22 77.5 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) YbhQ PF11076.8 gi|20090465|ref|NP_616540.1| - 0.035 14.1 0.1 0.038 14.0 0.1 1.1 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ DUF1622 PF07784.11 gi|20090466|ref|NP_616541.1| - 8.9e-25 86.4 0.2 1.2e-24 86.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) DUF2127 PF09900.9 gi|20090466|ref|NP_616541.1| - 0.043 14.1 0.3 0.077 13.3 0.3 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2127) PALP PF00291.25 gi|20090468|ref|NP_616543.1| - 7.8e-80 268.4 2.6 9.1e-80 268.2 2.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|20090468|ref|NP_616543.1| - 0.19 12.1 1.8 0.45 10.9 1.8 1.6 1 0 0 1 1 1 0 C1 domain zinc_ribbon_2 PF13240.6 gi|20090468|ref|NP_616543.1| - 0.35 10.7 1.9 0.71 9.7 1.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain tRNA-synt_1 PF00133.22 gi|20090469|ref|NP_616544.1| - 7.7e-59 199.5 0.2 7.2e-57 193.0 0.2 3.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|20090469|ref|NP_616544.1| - 2.3e-25 89.2 0.6 1.6e-11 43.6 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|20090469|ref|NP_616544.1| - 1.2e-20 74.1 0.2 1.2e-20 74.1 0.2 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|20090469|ref|NP_616544.1| - 5.4e-10 39.1 0.1 2.9e-06 26.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|20090469|ref|NP_616544.1| - 2.3e-06 27.3 0.0 4.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|20090469|ref|NP_616544.1| - 0.0037 16.2 0.0 0.0098 14.8 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|20090469|ref|NP_616544.1| - 0.0058 15.6 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (R) DUF1858 PF08984.11 gi|20090469|ref|NP_616544.1| - 0.13 12.5 0.0 24 5.2 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) P3A PF08727.11 gi|20090470|ref|NP_616545.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Poliovirus 3A protein like TPR_2 PF07719.17 gi|20090471|ref|NP_616546.1| - 2.3e-274 864.2 155.5 6.9e-08 32.0 0.0 51.0 51 0 0 51 51 51 48 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090471|ref|NP_616546.1| - 1e-271 867.1 131.2 8.5e-08 31.7 0.0 50.5 51 0 0 51 51 51 47 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090471|ref|NP_616546.1| - 3.1e-204 661.4 82.9 4.6e-11 43.2 0.8 31.0 16 7 18 36 36 35 35 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090471|ref|NP_616546.1| - 2.1e-183 579.6 113.6 4.4e-07 29.6 0.1 49.6 51 0 0 51 51 50 37 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090471|ref|NP_616546.1| - 1.3e-158 515.7 100.8 5.1e-09 36.5 0.1 29.3 17 8 10 32 32 31 26 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090471|ref|NP_616546.1| - 8.4e-150 486.3 100.4 2.4e-08 33.5 0.0 45.9 15 11 33 48 48 48 33 TPR repeat TPR_14 PF13428.6 gi|20090471|ref|NP_616546.1| - 6.5e-140 443.7 123.2 5.1e-05 23.7 0.2 48.2 8 6 41 50 50 49 35 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090471|ref|NP_616546.1| - 1.7e-131 428.6 61.0 1.4e-06 28.4 3.5 29.7 17 8 13 30 30 30 23 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090471|ref|NP_616546.1| - 2.2e-117 376.3 113.4 8.7e-05 22.9 0.2 48.6 51 0 0 51 51 48 21 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20090471|ref|NP_616546.1| - 1.7e-113 371.1 119.7 6.3e-07 29.6 0.1 33.6 14 10 22 37 37 37 30 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090471|ref|NP_616546.1| - 9.4e-112 365.5 86.3 3.9e-09 36.6 0.3 25.2 10 8 16 27 27 27 19 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 gi|20090471|ref|NP_616546.1| - 6e-109 348.9 75.5 0.00016 21.8 0.1 40.8 43 1 1 44 44 41 19 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20090471|ref|NP_616546.1| - 1.7e-71 236.1 89.7 0.00041 20.4 0.1 36.9 23 14 20 43 43 39 15 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|20090471|ref|NP_616546.1| - 3e-69 224.1 91.7 0.0009 19.1 0.1 41.2 39 6 6 45 45 41 13 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|20090471|ref|NP_616546.1| - 3.9e-43 146.2 54.9 9.2e-05 22.4 0.0 21.9 6 4 16 22 22 22 9 Putative TPR-like repeat NARP1 PF12569.8 gi|20090471|ref|NP_616546.1| - 1.5e-39 136.3 68.8 1e-05 24.7 0.2 19.7 6 4 9 20 20 20 13 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|20090471|ref|NP_616546.1| - 1.9e-34 119.2 82.2 0.013 16.0 0.4 20.7 9 5 12 22 22 21 9 Bacterial transcriptional activator domain TPR_20 PF14561.6 gi|20090471|ref|NP_616546.1| - 2.8e-30 104.5 69.0 0.048 14.0 0.1 24.7 12 7 12 29 29 25 6 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|20090471|ref|NP_616546.1| - 3.7e-29 102.1 51.8 0.0044 16.5 0.2 18.0 9 6 8 19 19 19 9 Coatomer epsilon subunit TPR_4 PF07721.14 gi|20090471|ref|NP_616546.1| - 1e-22 78.3 32.1 2.5 9.0 0.5 22.5 22 0 0 22 22 21 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|20090471|ref|NP_616546.1| - 2.3e-21 76.2 60.1 0.0037 16.5 0.3 16.9 7 4 7 16 16 16 6 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|20090471|ref|NP_616546.1| - 6.2e-21 74.5 31.2 6.2e-05 21.9 0.2 15.7 11 6 4 16 16 16 4 Protein kinase G tetratricopeptide repeat TPR_10 PF13374.6 gi|20090471|ref|NP_616546.1| - 2.6e-19 68.5 116.6 0.73 9.8 0.0 34.2 43 0 0 43 43 33 5 Tetratricopeptide repeat YfiO PF13525.6 gi|20090471|ref|NP_616546.1| - 8.3e-18 64.8 34.4 0.0023 17.7 0.3 15.1 8 5 5 14 14 14 3 Outer membrane lipoprotein Paf67 PF10255.9 gi|20090471|ref|NP_616546.1| - 9.9e-17 61.0 0.0 3.2 6.7 0.0 13.7 11 5 6 17 17 16 1 RNA polymerase I-associated factor PAF67 HrpB1_HrpK PF09613.10 gi|20090471|ref|NP_616546.1| - 1.1e-16 60.6 23.3 1.4 8.5 0.0 18.0 10 8 8 20 20 19 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_3 PF07720.12 gi|20090471|ref|NP_616546.1| - 5e-15 55.1 49.6 0.17 11.9 0.9 21.6 22 0 0 22 22 20 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|20090471|ref|NP_616546.1| - 3e-11 43.6 57.2 0.38 10.8 0.1 24.4 14 7 10 25 25 22 1 Domain of Unknown Function (DUF3856) Rapsyn_N PF10579.9 gi|20090471|ref|NP_616546.1| - 2e-08 34.2 7.2 10 6.3 0.0 12.5 12 3 2 14 14 10 0 Rapsyn N-terminal myristoylation and linker region FAT PF02259.23 gi|20090471|ref|NP_616546.1| - 4.5e-08 32.7 15.2 0.018 14.3 0.1 9.5 4 4 4 9 9 9 2 FAT domain Alkyl_sulf_dimr PF14863.6 gi|20090471|ref|NP_616546.1| - 1.8e-07 31.7 23.7 0.24 11.8 0.1 11.4 11 2 0 12 12 11 1 Alkyl sulfatase dimerisation DUF4919 PF16266.5 gi|20090471|ref|NP_616546.1| - 2.5e-07 30.8 9.5 16 5.4 0.0 9.3 8 2 0 9 9 9 0 Domain of unknown function (DUF4919) TPR_18 PF13512.6 gi|20090471|ref|NP_616546.1| - 2.3e-05 24.5 9.9 6 7.0 0.1 10.0 10 4 0 10 10 8 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20090471|ref|NP_616546.1| - 3.3e-05 23.7 43.4 0.069 12.9 0.1 13.0 8 5 6 15 15 14 1 Tetratricopeptide repeat-like domain ChAPs PF09295.10 gi|20090471|ref|NP_616546.1| - 7.1e-05 22.0 17.2 0.34 9.9 0.0 8.3 9 1 1 10 10 9 1 ChAPs (Chs5p-Arf1p-binding proteins) DUF627 PF04781.12 gi|20090471|ref|NP_616546.1| - 0.0001 22.3 12.9 4.6 7.3 0.1 10.2 10 2 2 12 12 9 0 Protein of unknown function (DUF627) ANAPC5 PF12862.7 gi|20090471|ref|NP_616546.1| - 0.003 17.6 32.5 17 5.6 0.0 15.5 15 5 2 18 18 12 0 Anaphase-promoting complex subunit 5 DUF5588 PF17826.1 gi|20090471|ref|NP_616546.1| - 0.0041 16.1 2.0 7.4 5.4 0.0 5.0 6 0 0 6 6 5 0 Family of unknown function (DUF5588) HTH_Bact PF18768.1 gi|20090471|ref|NP_616546.1| - 0.0094 15.5 4.1 6.5 6.4 0.0 6.6 7 0 0 7 7 4 0 Helix-turn-helix bacterial domain SHNi-TPR PF10516.9 gi|20090471|ref|NP_616546.1| - 0.012 15.1 44.2 0.058 12.9 0.3 13.1 14 0 0 14 14 11 0 SHNi-TPR MIT PF04212.18 gi|20090471|ref|NP_616546.1| - 0.014 15.4 63.3 32 4.7 0.1 22.7 22 5 4 26 26 22 0 MIT (microtubule interacting and transport) domain DUF2225 PF09986.9 gi|20090471|ref|NP_616546.1| - 0.015 15.1 32.8 0.34 10.6 0.2 10.7 9 3 0 11 11 9 0 Uncharacterized protein conserved in bacteria (DUF2225) PPR_3 PF13812.6 gi|20090471|ref|NP_616546.1| - 0.047 13.8 0.2 9.1 6.4 0.0 4.7 5 0 0 5 5 4 0 Pentatricopeptide repeat domain Wzy_C_2 PF11846.8 gi|20090471|ref|NP_616546.1| - 0.051 13.5 18.1 33 4.3 0.0 9.8 10 2 1 11 11 11 0 Virulence factor membrane-bound polymerase, C-terminal Oxidored-like PF09791.9 gi|20090471|ref|NP_616546.1| - 0.082 12.6 5.3 5.4 6.8 0.0 5.4 6 0 0 6 6 3 0 Oxidoreductase-like protein, N-terminal GATase1_like PF07090.11 gi|20090471|ref|NP_616546.1| - 0.09 12.2 0.2 27 4.1 0.1 3.6 3 0 0 3 3 3 0 Putative glutamine amidotransferase DUF5113 PF17140.4 gi|20090471|ref|NP_616546.1| - 0.15 11.8 26.5 1.8 8.4 0.0 12.0 13 4 2 16 16 10 0 Domain of unknown function (DUF5113) hnRNP_Q_AcD PF18360.1 gi|20090471|ref|NP_616546.1| - 0.23 11.4 1.1 15 5.6 0.1 3.9 3 0 0 3 3 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain SPOB_a PF14689.6 gi|20090471|ref|NP_616546.1| - 0.31 10.8 4.9 47 3.8 0.0 7.4 9 0 0 9 9 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain DDT PF02791.17 gi|20090471|ref|NP_616546.1| - 1.3 9.4 12.5 60 4.1 0.0 8.4 10 0 0 10 10 5 0 DDT domain DUF5112 PF17139.4 gi|20090471|ref|NP_616546.1| - 2 7.8 13.7 8.4 5.8 0.0 5.1 6 0 0 6 6 4 0 Domain of unknown function (DUF5112) TOM20_plant PF06552.12 gi|20090471|ref|NP_616546.1| - 2.3 7.9 30.8 6.8 6.4 0.3 12.1 11 5 3 16 16 11 0 Plant specific mitochondrial import receptor subunit TOM20 PPTA PF01239.22 gi|20090471|ref|NP_616546.1| - 4.8 7.1 13.4 6.3 6.7 0.0 6.4 8 0 0 8 8 5 0 Protein prenyltransferase alpha subunit repeat Macro PF01661.21 gi|20090472|ref|NP_616547.1| - 3.2e-44 149.7 0.0 5e-44 149.1 0.0 1.3 1 0 0 1 1 1 1 Macro domain Paz_1 PF18349.1 gi|20090472|ref|NP_616547.1| - 0.1 12.6 0.0 0.52 10.3 0.0 2.1 2 0 0 2 2 2 0 PAZ domain URO-D PF01208.17 gi|20090473|ref|NP_616548.1| - 2.3e-83 280.2 0.0 2.6e-83 280.1 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MtaB PF12176.8 gi|20090474|ref|NP_616549.1| - 1.4e-230 765.9 8.4 1.6e-230 765.7 8.4 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.19 gi|20090475|ref|NP_616550.1| - 4.3e-18 65.5 0.1 7e-18 64.8 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20090475|ref|NP_616550.1| - 1.5e-15 57.4 0.1 4.3e-15 55.9 0.1 1.8 2 0 0 2 2 2 1 B12 binding domain DUF3734 PF12536.8 gi|20090476|ref|NP_616551.1| - 0.051 13.9 0.0 0.051 13.9 0.0 1.1 1 0 0 1 1 1 0 Patatin phospholipase CbiZ PF01955.18 gi|20090478|ref|NP_616553.1| - 2.5e-36 125.6 0.0 3.2e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase dCache_1 PF02743.18 gi|20090479|ref|NP_616554.1| - 1e-12 48.4 0.2 1.5e-12 47.8 0.2 1.3 1 0 0 1 1 1 1 Cache domain Cache_3-Cache_2 PF17201.4 gi|20090479|ref|NP_616554.1| - 0.0057 16.0 0.0 0.0089 15.3 0.0 1.2 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain DUF3989 PF13150.6 gi|20090479|ref|NP_616554.1| - 3.7 7.4 6.8 3.5 7.4 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3989) DUF2634 PF10934.8 gi|20090481|ref|NP_616556.1| - 0.035 14.2 1.2 2.1 8.5 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2634) LnmK_N_HDF PF18238.1 gi|20090481|ref|NP_616556.1| - 0.14 11.9 1.4 0.29 10.9 0.3 1.9 2 0 0 2 2 2 0 LnmK N-terminal Hot Dog Fold domain PocR PF10114.9 gi|20090482|ref|NP_616557.1| - 4.2e-48 163.2 0.1 2e-47 161.0 0.0 2.2 2 0 0 2 2 2 1 Sensory domain found in PocR HisKA_2 PF07568.12 gi|20090482|ref|NP_616557.1| - 7.5e-33 112.5 0.2 7.5e-33 112.5 0.2 2.3 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.12 gi|20090482|ref|NP_616557.1| - 1.3e-31 108.7 0.1 3.1e-16 59.4 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|20090482|ref|NP_616557.1| - 9.9e-26 90.0 0.0 2.5e-11 43.5 0.0 5.3 6 0 0 6 6 6 4 PAS fold PAS_9 PF13426.7 gi|20090482|ref|NP_616557.1| - 5.5e-23 81.2 0.1 9.2e-15 54.8 0.0 4.8 5 0 0 5 5 5 2 PAS domain PAS_4 PF08448.10 gi|20090482|ref|NP_616557.1| - 2.7e-22 79.1 0.0 1.3e-09 38.3 0.0 4.5 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|20090482|ref|NP_616557.1| - 4.7e-09 36.7 1.0 4.5e-08 33.6 0.3 2.9 3 1 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20090482|ref|NP_616557.1| - 2.7e-07 30.4 0.0 6.4e-05 22.9 0.0 3.4 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|20090482|ref|NP_616557.1| - 0.00042 20.3 0.0 0.0012 18.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20090482|ref|NP_616557.1| - 0.001 19.8 0.0 0.004 17.8 0.0 2.1 1 0 0 1 1 1 1 HWE histidine kinase PAS_10 PF13596.6 gi|20090482|ref|NP_616557.1| - 0.065 13.8 0.1 33 5.1 0.0 3.2 3 0 0 3 3 2 0 PAS domain DUF5344 PF17279.2 gi|20090482|ref|NP_616557.1| - 1.8 9.2 5.1 0.89 10.2 0.7 2.8 3 0 0 3 3 3 0 Family of unknown function (DUF5344) OmpH PF03938.14 gi|20090482|ref|NP_616557.1| - 6 7.2 8.5 0.37 11.1 0.2 2.9 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) PAS_9 PF13426.7 gi|20090483|ref|NP_616558.1| - 1.5e-44 150.5 0.5 1.2e-18 67.2 0.2 5.1 5 0 0 5 5 5 3 PAS domain PAS PF00989.25 gi|20090483|ref|NP_616558.1| - 1.4e-41 141.0 0.0 1.9e-17 63.3 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.12 gi|20090483|ref|NP_616558.1| - 6.9e-41 138.4 0.1 1.2e-19 70.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|20090483|ref|NP_616558.1| - 4.1e-31 107.5 0.0 4.5e-14 52.6 0.0 4.7 4 1 0 4 4 4 3 PAS fold HisKA_2 PF07568.12 gi|20090483|ref|NP_616558.1| - 3.7e-27 94.2 4.0 1e-26 92.8 1.9 3.0 2 0 0 2 2 2 1 Histidine kinase GAF_3 PF13492.6 gi|20090483|ref|NP_616558.1| - 6.1e-17 62.2 0.0 1.2e-16 61.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|20090483|ref|NP_616558.1| - 5.4e-15 55.0 0.0 6.3e-09 35.7 0.0 3.8 5 0 0 5 5 4 2 PAS domain GAF PF01590.26 gi|20090483|ref|NP_616558.1| - 5.9e-10 39.9 0.0 2.4e-09 37.9 0.0 2.0 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|20090483|ref|NP_616558.1| - 7.9e-10 39.2 0.3 5.1e-09 36.6 0.1 2.5 2 1 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|20090483|ref|NP_616558.1| - 3e-09 37.0 0.9 4e-05 23.8 0.0 4.4 4 1 0 4 4 3 2 PAS fold GAF_2 PF13185.6 gi|20090483|ref|NP_616558.1| - 4.6e-09 36.7 0.0 8.9e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|20090483|ref|NP_616558.1| - 0.0009 19.2 0.0 0.0022 18.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|20090483|ref|NP_616558.1| - 0.0046 16.6 0.2 0.029 14.0 0.2 2.4 2 0 0 2 2 2 1 UPF0242 C-terminal PAS-like domain ZT_dimer PF16916.5 gi|20090483|ref|NP_616558.1| - 0.051 13.7 0.1 0.6 10.3 0.1 2.9 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter MEKHLA PF08670.11 gi|20090483|ref|NP_616558.1| - 0.058 13.3 0.0 1 9.2 0.0 2.4 1 1 1 2 2 2 0 MEKHLA domain HWE_HK PF07536.14 gi|20090483|ref|NP_616558.1| - 0.069 13.9 0.1 0.2 12.4 0.1 1.8 1 0 0 1 1 1 0 HWE histidine kinase Jnk-SapK_ap_N PF09744.9 gi|20090483|ref|NP_616558.1| - 6.1 7.0 13.7 3.2 8.0 1.5 3.7 3 0 0 3 3 3 0 JNK_SAPK-associated protein-1 OmpH PF03938.14 gi|20090483|ref|NP_616558.1| - 7.7 6.8 8.9 0.87 9.9 1.1 2.9 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) DUF4277 PF14104.6 gi|20090484|ref|NP_616559.1| - 7.9e-39 132.4 0.0 1.9e-38 131.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20090484|ref|NP_616559.1| - 3.5e-11 43.1 0.7 1.8e-10 40.9 0.7 1.9 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20090484|ref|NP_616559.1| - 0.075 13.3 0.2 11 6.3 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute HisKA_2 PF07568.12 gi|20090485|ref|NP_616560.1| - 9.9e-34 115.3 3.7 9.6e-33 112.1 0.4 3.2 3 0 0 3 3 3 1 Histidine kinase PAS PF00989.25 gi|20090485|ref|NP_616560.1| - 1.2e-33 115.5 0.0 5.2e-07 29.6 0.0 6.8 6 0 0 6 6 6 5 PAS fold PAS_4 PF08448.10 gi|20090485|ref|NP_616560.1| - 2.9e-33 114.4 0.0 3e-11 43.5 0.0 6.3 6 0 0 6 6 6 4 PAS fold PAS_3 PF08447.12 gi|20090485|ref|NP_616560.1| - 9.7e-33 112.3 3.3 3.3e-19 68.9 0.2 6.2 6 0 0 6 6 6 2 PAS fold PAS_9 PF13426.7 gi|20090485|ref|NP_616560.1| - 1.1e-31 109.2 0.0 1e-06 28.9 0.0 6.8 7 0 0 7 7 7 5 PAS domain GAF_2 PF13185.6 gi|20090485|ref|NP_616560.1| - 1.5e-19 70.7 0.0 5.2e-19 68.9 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|20090485|ref|NP_616560.1| - 7.1e-12 45.1 0.1 0.0055 16.7 0.0 5.4 4 1 0 5 5 5 3 PAS domain HATPase_c PF02518.26 gi|20090485|ref|NP_616560.1| - 3.3e-10 40.5 0.1 2.4e-09 37.7 0.1 2.5 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|20090485|ref|NP_616560.1| - 5.3e-06 26.6 1.7 0.32 11.2 0.0 5.2 5 0 0 5 5 5 2 PAS fold HWE_HK PF07536.14 gi|20090485|ref|NP_616560.1| - 9.2e-05 23.1 1.2 0.00025 21.7 0.1 2.3 2 0 0 2 2 2 1 HWE histidine kinase GAF PF01590.26 gi|20090485|ref|NP_616560.1| - 0.00014 22.4 0.0 0.00072 20.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.6 gi|20090485|ref|NP_616560.1| - 0.025 14.4 0.0 0.058 13.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|20090485|ref|NP_616560.1| - 0.12 12.9 0.0 7.7 7.2 0.0 3.8 3 0 0 3 3 2 0 PAS domain FAM25 PF15825.5 gi|20090485|ref|NP_616560.1| - 2.5 8.5 6.9 0.46 10.8 1.7 2.5 2 0 0 2 2 2 0 FAM25 family Oxidored_nitro PF00148.19 gi|20090486|ref|NP_616561.1| - 4.1e-72 243.1 0.0 5.9e-72 242.6 0.0 1.3 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF3782 PF12644.7 gi|20090486|ref|NP_616561.1| - 0.11 12.7 0.2 0.44 10.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) Oxidored_nitro PF00148.19 gi|20090487|ref|NP_616562.1| - 5.7e-75 252.5 0.2 6.5e-75 252.3 0.2 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|20090488|ref|NP_616563.1| - 5.2e-95 318.0 0.0 6.3e-95 317.7 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|20090488|ref|NP_616563.1| - 1.1e-10 41.7 0.0 1.7e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20090488|ref|NP_616563.1| - 1.9e-09 37.4 0.0 3.5e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|20090488|ref|NP_616563.1| - 1.7e-07 31.3 0.0 3.6e-07 30.3 0.0 1.5 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|20090488|ref|NP_616563.1| - 2.7e-06 26.8 0.1 5e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|20090488|ref|NP_616563.1| - 9e-05 22.1 0.0 0.008 15.7 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|20090488|ref|NP_616563.1| - 0.0047 16.2 0.0 0.008 15.5 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|20090488|ref|NP_616563.1| - 0.0096 14.9 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|20090488|ref|NP_616563.1| - 0.011 16.2 0.0 0.028 15.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|20090488|ref|NP_616563.1| - 0.018 14.3 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|20090488|ref|NP_616563.1| - 0.019 15.4 0.0 0.04 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|20090488|ref|NP_616563.1| - 0.026 14.3 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|20090488|ref|NP_616563.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|20090488|ref|NP_616563.1| - 0.12 12.8 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SRP54 PF00448.22 gi|20090488|ref|NP_616563.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Methyltransf_25 PF13649.6 gi|20090489|ref|NP_616564.1| - 9e-21 74.4 0.0 1.5e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090489|ref|NP_616564.1| - 5e-18 65.3 0.0 6.7e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090489|ref|NP_616564.1| - 6e-17 62.1 0.0 9.1e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|20090489|ref|NP_616564.1| - 1.2e-13 51.2 0.0 2e-13 50.5 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|20090489|ref|NP_616564.1| - 8.8e-13 48.4 0.0 1.2e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090489|ref|NP_616564.1| - 1.4e-12 48.2 0.0 2.1e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20090489|ref|NP_616564.1| - 4.3e-11 42.6 0.0 7.2e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|20090489|ref|NP_616564.1| - 2e-07 30.7 0.0 2.9e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|20090489|ref|NP_616564.1| - 9.8e-06 25.1 0.0 1.5e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|20090489|ref|NP_616564.1| - 3.3e-05 23.4 0.0 5.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|20090489|ref|NP_616564.1| - 3.6e-05 23.4 0.0 5.2e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.20 gi|20090489|ref|NP_616564.1| - 0.0006 19.2 0.0 0.00086 18.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|20090489|ref|NP_616564.1| - 0.0035 17.3 0.0 0.0048 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain 7TMR-DISM_7TM PF07695.11 gi|20090490|ref|NP_616565.1| - 0.041 13.8 11.5 0.053 13.4 11.5 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Sacchrp_dh_NADP PF03435.18 gi|20090491|ref|NP_616566.1| - 3.3e-27 95.3 0.0 1.3e-26 93.4 0.0 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Sacchrp_dh_C PF16653.5 gi|20090491|ref|NP_616566.1| - 1e-23 84.8 0.0 1.7e-23 84.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain DUF4096 PF13340.6 gi|20090492|ref|NP_616567.1| - 2.1e-26 92.0 1.0 2.4e-26 91.8 1.0 1.0 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20090493|ref|NP_616568.1| - 3.9e-19 69.2 2.2 2.5e-18 66.5 2.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.11 gi|20090493|ref|NP_616568.1| - 0.023 15.2 4.3 0.29 11.7 0.6 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1410) Ntox15 PF15604.6 gi|20090493|ref|NP_616568.1| - 2.7 8.1 6.5 0.74 9.9 2.1 2.1 1 1 1 2 2 2 0 Novel toxin 15 GDE_N_bis PF14742.6 gi|20090494|ref|NP_616569.1| - 1.5e-44 151.9 0.0 2.1e-44 151.4 0.0 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|20090494|ref|NP_616569.1| - 3.7e-15 55.8 0.0 8e-15 54.6 0.0 1.5 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.16 gi|20090494|ref|NP_616569.1| - 0.00094 18.1 0.1 0.034 12.9 0.1 2.1 1 1 1 2 2 2 2 Glycosyl hydrolase family 63 C-terminal domain Bac_rhamnosid6H PF17389.2 gi|20090494|ref|NP_616569.1| - 0.027 13.7 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Alpha-amylase PF00128.24 gi|20090495|ref|NP_616570.1| - 6.7e-46 157.4 0.1 1.6e-38 133.2 0.0 2.2 2 0 0 2 2 2 2 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|20090495|ref|NP_616570.1| - 0.0011 19.0 0.0 0.0036 17.4 0.0 2.0 1 1 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF4367 PF14285.6 gi|20090495|ref|NP_616570.1| - 0.025 15.0 2.3 17 5.9 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4367) YoeB_toxin PF06769.14 gi|20090495|ref|NP_616570.1| - 0.046 13.7 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 YoeB-like toxin of bacterial type II toxin-antitoxin system PDZ_3 PF17815.1 gi|20090496|ref|NP_616571.1| - 0.076 12.9 0.2 6.4 6.6 0.0 2.3 1 1 1 2 2 2 0 PDZ domain PAS_9 PF13426.7 gi|20090498|ref|NP_616573.1| - 5.2e-60 200.2 0.2 1.9e-18 66.6 0.0 6.4 6 0 0 6 6 6 4 PAS domain PAS PF00989.25 gi|20090498|ref|NP_616573.1| - 8.6e-50 167.5 0.0 1.3e-13 51.0 0.0 5.4 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|20090498|ref|NP_616573.1| - 4.3e-38 129.9 0.0 3.2e-12 46.7 0.0 6.0 5 2 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|20090498|ref|NP_616573.1| - 7.6e-36 121.5 0.0 1.2e-09 38.0 0.0 4.8 4 0 0 4 4 4 4 PAS domain HisKA_2 PF07568.12 gi|20090498|ref|NP_616573.1| - 6.7e-31 106.2 0.5 6.7e-31 106.2 0.5 3.5 3 0 0 3 3 3 1 Histidine kinase PAS_3 PF08447.12 gi|20090498|ref|NP_616573.1| - 8.2e-26 90.1 0.0 8.3e-09 35.6 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS_7 PF12860.7 gi|20090498|ref|NP_616573.1| - 7.7e-10 38.9 0.4 0.037 14.2 0.0 6.7 5 4 0 5 5 5 1 PAS fold HATPase_c PF02518.26 gi|20090498|ref|NP_616573.1| - 3e-09 37.4 0.5 1.9e-08 34.8 0.2 2.4 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_12 PF18095.1 gi|20090498|ref|NP_616573.1| - 4.8e-06 26.3 0.0 0.18 11.4 0.0 3.6 3 0 0 3 3 3 2 UPF0242 C-terminal PAS-like domain PAS_10 PF13596.6 gi|20090498|ref|NP_616573.1| - 3.7e-05 24.2 0.0 0.00026 21.5 0.0 2.6 3 0 0 3 3 1 1 PAS domain MEKHLA PF08670.11 gi|20090498|ref|NP_616573.1| - 7.5e-05 22.7 0.0 0.77 9.6 0.0 3.5 3 0 0 3 3 3 1 MEKHLA domain HATPase_c_2 PF13581.6 gi|20090498|ref|NP_616573.1| - 0.00097 19.1 0.0 0.0024 17.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20090498|ref|NP_616573.1| - 0.0029 18.3 0.5 0.016 15.9 0.0 2.7 3 0 0 3 3 2 1 HWE histidine kinase MLTR_LBD PF17765.1 gi|20090498|ref|NP_616573.1| - 0.027 14.6 0.3 1.4 9.1 0.0 3.2 3 1 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain SPOB_a PF14689.6 gi|20090498|ref|NP_616573.1| - 0.072 12.8 0.2 0.23 11.2 0.2 1.9 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_3 PF08447.12 gi|20090499|ref|NP_616574.1| - 1.2e-50 169.7 0.3 1.2e-20 73.5 0.0 5.3 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.7 gi|20090499|ref|NP_616574.1| - 2.9e-40 136.7 0.3 4.7e-16 58.9 0.0 5.8 6 1 0 6 6 6 4 PAS domain PAS PF00989.25 gi|20090499|ref|NP_616574.1| - 6.3e-34 116.4 0.0 3.8e-10 39.8 0.0 5.9 5 1 0 5 5 5 4 PAS fold PAS_4 PF08448.10 gi|20090499|ref|NP_616574.1| - 8.8e-29 100.0 0.0 4.4e-13 49.5 0.0 5.4 5 1 0 5 5 5 4 PAS fold HisKA_2 PF07568.12 gi|20090499|ref|NP_616574.1| - 3.5e-27 94.3 1.5 1.2e-26 92.6 1.5 2.0 1 0 0 1 1 1 1 Histidine kinase GAF_2 PF13185.6 gi|20090499|ref|NP_616574.1| - 8.9e-21 74.6 0.0 1.9e-20 73.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|20090499|ref|NP_616574.1| - 6.9e-10 38.7 0.1 0.023 14.7 0.0 4.7 5 0 0 5 5 5 2 PAS domain HATPase_c PF02518.26 gi|20090499|ref|NP_616574.1| - 2.2e-09 37.8 0.0 9e-09 35.8 0.0 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|20090499|ref|NP_616574.1| - 1.3e-06 29.1 0.0 2.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|20090499|ref|NP_616574.1| - 3.6e-05 23.7 0.0 0.00014 21.8 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.6 gi|20090499|ref|NP_616574.1| - 0.0012 19.1 0.0 0.0037 17.6 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|20090499|ref|NP_616574.1| - 0.0015 18.7 4.6 0.0073 16.5 0.0 4.2 4 2 0 4 4 4 1 PAS fold PAS_10 PF13596.6 gi|20090499|ref|NP_616574.1| - 0.0016 19.0 0.0 6.5 7.4 0.0 4.4 4 1 0 4 4 3 1 PAS domain HWE_HK PF07536.14 gi|20090499|ref|NP_616574.1| - 0.015 16.0 0.1 0.054 14.2 0.1 2.0 1 0 0 1 1 1 0 HWE histidine kinase Polbeta PF18765.1 gi|20090500|ref|NP_616575.1| - 1.8e-05 24.7 0.0 3.7e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20090500|ref|NP_616575.1| - 5.5e-05 23.4 0.1 0.00015 22.0 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain NUDIX PF00293.28 gi|20090501|ref|NP_616576.1| - 1.6e-09 37.9 0.0 2e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DDE_Tnp_IS1 PF03400.13 gi|20090502|ref|NP_616577.1| - 5.8e-14 52.6 0.4 6.4e-14 52.4 0.4 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20090503|ref|NP_616578.1| - 2.3e-06 27.2 0.0 4.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20090503|ref|NP_616578.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20090503|ref|NP_616578.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20090503|ref|NP_616578.1| - 0.0019 17.9 0.4 0.0069 16.1 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20090503|ref|NP_616578.1| - 0.0064 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20090503|ref|NP_616578.1| - 0.0071 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20090503|ref|NP_616578.1| - 0.0098 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|20090503|ref|NP_616578.1| - 0.02 13.9 0.1 0.032 13.2 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20090503|ref|NP_616578.1| - 0.043 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20090503|ref|NP_616578.1| - 0.056 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20090503|ref|NP_616578.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20090503|ref|NP_616578.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20090503|ref|NP_616578.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin Met_10 PF02475.16 gi|20090504|ref|NP_616579.1| - 5.3e-48 163.4 0.0 6.8e-48 163.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|20090504|ref|NP_616579.1| - 0.00023 20.8 0.0 0.00037 20.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|20090504|ref|NP_616579.1| - 0.0044 16.7 0.0 0.0082 15.8 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 TRM PF02005.16 gi|20090504|ref|NP_616579.1| - 0.014 14.5 0.0 0.034 13.3 0.0 1.5 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase PRMT5 PF05185.16 gi|20090504|ref|NP_616579.1| - 0.023 14.5 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_11 PF08241.12 gi|20090504|ref|NP_616579.1| - 0.038 14.7 0.0 0.12 13.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090504|ref|NP_616579.1| - 0.086 13.6 0.0 0.17 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Pyr_redox_2 PF07992.14 gi|20090505|ref|NP_616580.1| - 2.3e-44 151.8 0.0 3.2e-44 151.3 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|20090505|ref|NP_616580.1| - 4.3e-20 72.0 0.1 2.4e-19 69.6 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|20090505|ref|NP_616580.1| - 3.5e-14 53.1 0.0 7.8e-14 52.0 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|20090505|ref|NP_616580.1| - 2.3e-10 40.2 0.0 4.6e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|20090505|ref|NP_616580.1| - 8e-06 25.2 0.1 0.16 11.1 0.0 2.9 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|20090505|ref|NP_616580.1| - 0.027 13.6 0.0 0.05 12.7 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain DUF92 PF01940.16 gi|20090506|ref|NP_616581.1| - 1e-52 178.9 14.8 1e-52 178.9 14.8 2.6 2 1 0 2 2 2 1 Integral membrane protein DUF92 DUF5316 PF17247.2 gi|20090506|ref|NP_616581.1| - 0.011 15.7 0.1 0.063 13.3 0.1 2.3 1 0 0 1 1 1 0 Family of unknown function (DUF5316) DJ-1_PfpI PF01965.24 gi|20090507|ref|NP_616582.1| - 7.3e-37 126.7 0.1 8.2e-37 126.5 0.1 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|20090507|ref|NP_616582.1| - 0.015 15.0 0.0 0.03 14.1 0.0 1.6 1 1 0 1 1 1 0 Glutamine amidotransferase class-I Nitroreductase PF00881.24 gi|20090508|ref|NP_616583.1| - 1.3e-16 61.1 0.0 6.4e-09 36.1 0.0 2.3 2 0 0 2 2 2 2 Nitroreductase family DUF21 PF01595.20 gi|20090509|ref|NP_616584.1| - 5.7e-35 120.6 1.0 8.3e-35 120.1 1.0 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain MFS_1 PF07690.16 gi|20090510|ref|NP_616585.1| - 6.1e-57 193.1 46.9 6.1e-57 193.1 46.9 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|20090510|ref|NP_616585.1| - 3e-09 36.3 32.3 4.7e-09 35.6 15.0 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|20090510|ref|NP_616585.1| - 2e-08 33.5 28.4 3.5e-06 26.1 12.1 2.5 2 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|20090510|ref|NP_616585.1| - 1.8e-07 29.9 11.4 2.4e-07 29.6 5.0 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.6 gi|20090510|ref|NP_616585.1| - 5.6e-06 25.2 13.1 5.6e-06 25.2 13.1 2.8 2 1 1 3 3 3 2 MFS/sugar transport protein PUCC PF03209.15 gi|20090510|ref|NP_616585.1| - 0.00013 21.1 6.4 0.00013 21.1 6.4 2.3 2 0 0 2 2 2 2 PUCC protein Glutaredoxin PF00462.24 gi|20090511|ref|NP_616586.1| - 4.9e-12 45.9 0.0 7.6e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|20090511|ref|NP_616586.1| - 0.0026 18.2 0.1 0.0048 17.3 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain GST_N_2 PF13409.6 gi|20090511|ref|NP_616586.1| - 0.0058 16.9 0.0 0.0075 16.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 gi|20090511|ref|NP_616586.1| - 0.011 16.1 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 gi|20090511|ref|NP_616586.1| - 0.099 12.7 0.2 0.38 10.8 0.2 1.9 1 1 0 1 1 1 0 Thioredoxin domain GST_N PF02798.20 gi|20090511|ref|NP_616586.1| - 0.1 13.0 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain FeThRed_B PF02943.15 gi|20090512|ref|NP_616587.1| - 9e-25 86.7 0.4 9e-25 86.7 0.4 1.5 2 0 0 2 2 2 1 Ferredoxin thioredoxin reductase catalytic beta chain HypA PF01155.19 gi|20090512|ref|NP_616587.1| - 0.04 13.9 1.1 0.04 13.9 1.1 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin PF00301.20 gi|20090512|ref|NP_616587.1| - 6.6 6.8 13.4 1.3 9.1 0.4 3.2 2 1 1 3 3 3 0 Rubredoxin Lectin_like PF18560.1 gi|20090513|ref|NP_616588.1| - 4.8e-53 179.5 1.0 2.2e-52 177.4 0.6 2.5 2 0 0 2 2 2 1 Lectin like domain Peptidase_C1 PF00112.23 gi|20090513|ref|NP_616588.1| - 3.9e-19 69.6 0.1 6.8e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Papain family cysteine protease Big_3_4 PF13754.6 gi|20090513|ref|NP_616588.1| - 3.5e-11 42.8 3.6 0.023 14.4 0.1 3.5 3 0 0 3 3 3 3 Domain of unknown function TFIIIC_sub6 PF10419.9 gi|20090513|ref|NP_616588.1| - 0.043 13.7 0.4 4.9 7.1 0.0 3.3 2 1 0 3 3 3 0 TFIIIC subunit triple barrel domain LAT PF15234.6 gi|20090513|ref|NP_616588.1| - 0.048 13.4 3.9 4.6 6.9 0.5 3.1 2 1 1 3 3 3 0 Linker for activation of T-cells Big_7 PF17957.1 gi|20090513|ref|NP_616588.1| - 0.072 13.9 30.7 1.9 9.3 4.3 4.5 4 0 0 4 4 4 0 Bacterial Ig domain HYR PF02494.16 gi|20090513|ref|NP_616588.1| - 0.3 11.4 9.4 0.21 11.9 2.0 3.9 3 1 0 3 3 3 0 HYR domain Cauli_AT PF03233.13 gi|20090513|ref|NP_616588.1| - 3 7.8 4.5 28 4.6 0.3 2.4 2 0 0 2 2 2 0 Aphid transmission protein TIG PF01833.24 gi|20090513|ref|NP_616588.1| - 8.8 6.5 18.6 5 7.3 1.3 4.6 4 1 0 4 4 4 0 IPT/TIG domain Pro_isomerase PF00160.21 gi|20090514|ref|NP_616589.1| - 9.7e-53 178.7 0.6 1.1e-52 178.5 0.6 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NTPase_1 PF03266.15 gi|20090516|ref|NP_616591.1| - 0.072 13.0 0.0 0.083 12.8 0.0 1.1 1 0 0 1 1 1 0 NTPase TrmB PF01978.19 gi|20090517|ref|NP_616592.1| - 2.4e-18 65.8 0.0 3.8e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|20090517|ref|NP_616592.1| - 0.0024 17.7 0.0 0.0035 17.2 0.0 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|20090517|ref|NP_616592.1| - 0.015 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|20090517|ref|NP_616592.1| - 0.046 13.5 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|20090517|ref|NP_616592.1| - 0.08 12.9 0.0 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 MarR family Ribonuc_red_lgC PF02867.15 gi|20090518|ref|NP_616593.1| - 3e-142 474.8 0.0 2.5e-100 336.5 0.0 2.9 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|20090518|ref|NP_616593.1| - 1.3e-14 53.9 0.0 5.7e-14 51.9 0.0 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain EamA PF00892.20 gi|20090519|ref|NP_616594.1| - 8e-30 103.8 36.0 5.8e-16 58.9 9.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EamA PF00892.20 gi|20090520|ref|NP_616595.1| - 9.8e-29 100.3 31.8 2.8e-15 56.7 7.3 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|20090520|ref|NP_616595.1| - 0.00067 19.1 3.0 0.0018 17.7 3.0 1.7 1 1 0 1 1 1 1 Triose-phosphate Transporter family YwiC PF14256.6 gi|20090520|ref|NP_616595.1| - 0.24 11.7 9.5 1.1 9.6 1.9 2.9 2 1 1 3 3 3 0 YwiC-like protein DUF2070 PF09843.9 gi|20090520|ref|NP_616595.1| - 1.5 7.0 24.2 0.037 12.3 13.6 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|20090521|ref|NP_616596.1| - 1.3e-32 113.2 0.0 1.7e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20090521|ref|NP_616596.1| - 8.5e-10 38.4 0.0 9.4e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20090521|ref|NP_616596.1| - 9.6e-06 25.6 0.0 0.0089 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20090521|ref|NP_616596.1| - 3.2e-05 23.6 0.1 6.4e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|20090521|ref|NP_616596.1| - 0.0002 21.2 0.0 0.0009 19.0 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|20090521|ref|NP_616596.1| - 0.00032 21.0 0.1 0.0036 17.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20090521|ref|NP_616596.1| - 0.00048 20.5 0.0 0.001 19.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|20090521|ref|NP_616596.1| - 0.0012 18.5 0.1 0.066 12.8 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|20090521|ref|NP_616596.1| - 0.0013 19.3 0.0 0.0025 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|20090521|ref|NP_616596.1| - 0.0031 17.2 0.0 0.33 10.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RNA12 PF10443.9 gi|20090521|ref|NP_616596.1| - 0.0096 14.7 0.0 0.026 13.3 0.0 1.6 2 0 0 2 2 2 1 RNA12 protein RsgA_GTPase PF03193.16 gi|20090521|ref|NP_616596.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|20090521|ref|NP_616596.1| - 0.024 14.4 0.1 0.041 13.6 0.0 1.4 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.7 gi|20090521|ref|NP_616596.1| - 0.024 13.6 0.0 0.55 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.6 gi|20090521|ref|NP_616596.1| - 0.025 14.7 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20090521|ref|NP_616596.1| - 0.038 13.9 0.2 0.24 11.3 0.1 2.1 1 1 1 2 2 2 0 NACHT domain DUF87 PF01935.17 gi|20090521|ref|NP_616596.1| - 0.049 13.7 0.4 0.084 13.0 0.2 1.5 2 0 0 2 2 1 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|20090521|ref|NP_616596.1| - 0.054 12.7 0.1 0.14 11.4 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|20090521|ref|NP_616596.1| - 0.07 12.8 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|20090521|ref|NP_616596.1| - 0.074 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SH3_2 PF07653.17 gi|20090521|ref|NP_616596.1| - 0.095 12.4 0.0 0.46 10.2 0.0 2.1 2 0 0 2 2 2 0 Variant SH3 domain MMR_HSR1 PF01926.23 gi|20090521|ref|NP_616596.1| - 0.11 12.6 0.2 0.31 11.1 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|20090521|ref|NP_616596.1| - 0.16 12.3 0.0 0.38 11.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase T4SS-DNA_transf PF02534.14 gi|20090521|ref|NP_616596.1| - 0.18 10.6 0.0 0.23 10.2 0.0 1.1 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer DUF296 PF03479.15 gi|20090522|ref|NP_616597.1| - 1.8e-14 54.0 0.0 2.1e-14 53.8 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Methyltransf_11 PF08241.12 gi|20090523|ref|NP_616598.1| - 1.7e-15 57.4 0.0 3.3e-15 56.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090523|ref|NP_616598.1| - 6.8e-10 39.5 0.0 1.3e-09 38.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090523|ref|NP_616598.1| - 1.9e-07 31.0 0.0 2.7e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090523|ref|NP_616598.1| - 2.5e-07 30.6 0.0 3.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090523|ref|NP_616598.1| - 9.8e-06 26.2 0.0 3.7e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090523|ref|NP_616598.1| - 0.0038 16.6 0.0 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FmrO PF07091.11 gi|20090523|ref|NP_616598.1| - 0.076 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) TrmB PF01978.19 gi|20090524|ref|NP_616599.1| - 0.0012 18.7 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|20090524|ref|NP_616599.1| - 0.0063 16.4 0.6 0.013 15.4 0.0 1.8 3 0 0 3 3 3 1 Transcriptional regulator PadR-like family SMC_ScpB PF04079.16 gi|20090524|ref|NP_616599.1| - 0.015 14.9 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB Enolase_C PF00113.22 gi|20090525|ref|NP_616600.1| - 1.2e-116 389.2 0.7 1.6e-116 388.8 0.7 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|20090525|ref|NP_616600.1| - 8.7e-61 203.9 0.0 1.7e-60 202.9 0.0 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|20090525|ref|NP_616600.1| - 1.3e-05 24.9 0.0 2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|20090525|ref|NP_616600.1| - 0.0089 15.2 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MacB_PCD PF12704.7 gi|20090527|ref|NP_616602.1| - 1.9e-18 67.6 2.2 1.9e-18 67.6 2.2 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20090527|ref|NP_616602.1| - 3.6e-16 59.4 3.2 3.6e-16 59.4 3.2 3.0 3 0 0 3 3 3 2 FtsX-like permease family TauE PF01925.19 gi|20090528|ref|NP_616603.1| - 1.3e-48 165.7 33.5 1.6e-48 165.4 33.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1474 PF07342.11 gi|20090529|ref|NP_616604.1| - 0.042 14.4 2.2 0.13 12.8 0.6 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1474) E1-E2_ATPase PF00122.20 gi|20090530|ref|NP_616605.1| - 2.2e-54 183.7 1.2 3.6e-53 179.8 1.0 2.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|20090530|ref|NP_616605.1| - 1e-21 78.2 0.4 2.3e-21 77.1 0.4 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|20090530|ref|NP_616605.1| - 5.7e-18 64.4 0.0 5.7e-18 64.4 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|20090530|ref|NP_616605.1| - 2.1e-05 24.4 0.1 0.00028 20.7 0.1 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Rtt106_N PF18215.1 gi|20090530|ref|NP_616605.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Histone chaperone Rtt106 N-terminal domain VIT1 PF01988.19 gi|20090530|ref|NP_616605.1| - 0.12 12.2 3.3 0.5 10.2 0.0 2.7 2 0 0 2 2 2 0 VIT family SET PF00856.28 gi|20090531|ref|NP_616606.1| - 4.7e-15 56.4 0.4 6.2e-14 52.7 0.4 1.9 1 1 0 1 1 1 1 SET domain Fer4_19 PF06902.11 gi|20090532|ref|NP_616607.1| - 9.6e-27 92.9 0.2 2e-26 91.9 0.2 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.10 gi|20090532|ref|NP_616607.1| - 3.7e-16 59.1 0.1 1.3e-15 57.3 0.1 2.0 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Cpn60_TCP1 PF00118.24 gi|20090534|ref|NP_616609.1| - 3.6e-157 523.9 15.7 4.1e-157 523.7 15.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Rib_5-P_isom_A PF06026.14 gi|20090535|ref|NP_616610.1| - 6e-64 214.8 0.2 9.1e-64 214.2 0.2 1.3 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|20090535|ref|NP_616610.1| - 9.8e-07 28.8 0.4 0.0017 18.3 0.0 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain Dppa2_A PF14049.6 gi|20090535|ref|NP_616610.1| - 0.013 15.6 0.2 0.12 12.6 0.0 2.1 2 0 0 2 2 2 0 Dppa2/4 conserved region in higher vertebrates tRNA-synt_2 PF00152.20 gi|20090536|ref|NP_616611.1| - 2.5e-91 306.0 0.3 3.1e-91 305.7 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|20090536|ref|NP_616611.1| - 8.6e-14 51.3 0.1 1.6e-13 50.4 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|20090536|ref|NP_616611.1| - 0.00022 20.8 1.4 0.031 13.8 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|20090536|ref|NP_616611.1| - 0.022 15.0 0.0 0.056 13.6 0.0 1.6 1 1 0 1 1 1 0 Mediator complex subunit 30 Cupredoxin_1 PF13473.6 gi|20090537|ref|NP_616612.1| - 4.7e-12 45.9 0.1 7.1e-12 45.4 0.1 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|20090537|ref|NP_616612.1| - 3.2e-10 40.3 0.5 2.2e-09 37.7 0.1 2.3 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Ac110_PIF PF07280.11 gi|20090537|ref|NP_616612.1| - 1.8 8.4 0.0 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 Per os infectivity factor AC110 Metallophos PF00149.28 gi|20090538|ref|NP_616613.1| - 2.4e-16 60.8 1.7 4.1e-16 60.1 1.7 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20090538|ref|NP_616613.1| - 1.8e-15 57.6 0.1 2.8e-15 56.9 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|20090538|ref|NP_616613.1| - 3.3e-06 26.6 0.3 0.04 13.3 0.1 2.7 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily DUF2124 PF09897.9 gi|20090538|ref|NP_616613.1| - 0.015 15.2 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) MutL PF13941.6 gi|20090538|ref|NP_616613.1| - 0.13 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 MutL protein Pribosyltran PF00156.27 gi|20090539|ref|NP_616614.1| - 1.5e-18 66.8 0.0 2.1e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain RecC_C PF17946.1 gi|20090541|ref|NP_616616.1| - 0.0058 16.4 0.2 0.057 13.2 0.7 2.3 2 1 0 2 2 2 1 RecC C-terminal domain ArdA PF07275.11 gi|20090541|ref|NP_616616.1| - 8.7 6.9 9.1 35 4.9 0.1 2.5 1 1 1 3 3 3 0 Antirestriction protein (ArdA) DUF711 PF05167.12 gi|20090543|ref|NP_616618.1| - 3.3e-181 602.6 10.2 4.1e-181 602.3 10.2 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) BMC PF00936.19 gi|20090543|ref|NP_616618.1| - 0.57 10.2 6.2 5 7.2 1.1 3.1 3 0 0 3 3 3 0 BMC domain Phage_integrase PF00589.22 gi|20090544|ref|NP_616619.1| - 8.6e-25 87.5 0.0 1.8e-24 86.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family zf-ribbon_3 PF13248.6 gi|20090544|ref|NP_616619.1| - 0.00012 21.4 2.5 0.00023 20.5 2.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|20090544|ref|NP_616619.1| - 0.00023 21.1 0.6 0.00055 19.9 0.6 1.6 1 0 0 1 1 1 1 Double zinc ribbon Phage_int_SAM_1 PF02899.17 gi|20090544|ref|NP_616619.1| - 0.00036 20.8 0.6 0.0028 17.9 0.1 2.6 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|20090544|ref|NP_616619.1| - 0.00057 20.3 0.6 0.0081 16.6 0.0 2.7 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_15 PF17032.5 gi|20090544|ref|NP_616619.1| - 0.017 15.9 0.2 0.037 14.8 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|20090544|ref|NP_616619.1| - 0.03 14.0 4.5 0.03 14.0 4.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF4524 PF15025.6 gi|20090544|ref|NP_616619.1| - 0.16 11.7 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4524) Zn_ribbon_2 PF12674.7 gi|20090544|ref|NP_616619.1| - 0.6 10.8 3.6 12 6.6 0.1 3.4 3 1 1 4 4 4 0 Putative zinc ribbon domain ParE_toxin PF05016.15 gi|20090546|ref|NP_616621.1| - 3.5e-10 40.4 0.0 4e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|20090546|ref|NP_616621.1| - 0.00014 21.8 0.0 0.0002 21.3 0.0 1.3 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YafQ_toxin PF15738.5 gi|20090546|ref|NP_616621.1| - 0.0019 18.5 0.1 0.0045 17.3 0.1 1.6 1 1 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ PRD PF00874.20 gi|20090548|ref|NP_616623.1| - 0.014 15.6 0.6 0.014 15.6 0.6 1.6 1 1 1 2 2 2 0 PRD domain DNA_ligase_ZBD PF03119.16 gi|20090548|ref|NP_616623.1| - 0.018 15.1 0.7 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain CxC5 PF18718.1 gi|20090548|ref|NP_616623.1| - 0.098 12.7 0.7 0.27 11.3 0.5 1.8 2 0 0 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_SprT PF17283.2 gi|20090548|ref|NP_616623.1| - 0.13 12.2 2.4 0.32 10.9 2.4 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Transglut_core PF01841.19 gi|20090549|ref|NP_616624.1| - 0.0017 18.8 0.0 0.004 17.6 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4131 PF13567.6 gi|20090549|ref|NP_616624.1| - 0.0094 15.6 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF2542 PF10808.8 gi|20090549|ref|NP_616624.1| - 0.36 11.3 2.0 12 6.5 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2542) AAA_16 PF13191.6 gi|20090550|ref|NP_616625.1| - 4.6e-06 27.1 0.0 1.8e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|20090550|ref|NP_616625.1| - 0.00032 20.7 3.7 0.00099 19.1 3.7 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Mga PF05043.13 gi|20090550|ref|NP_616625.1| - 0.013 16.1 1.3 0.022 15.4 0.0 2.0 3 0 0 3 3 3 0 Mga helix-turn-helix domain AAA_30 PF13604.6 gi|20090550|ref|NP_616625.1| - 0.015 15.0 0.0 0.03 14.0 0.0 1.4 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|20090550|ref|NP_616625.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|20090550|ref|NP_616625.1| - 0.057 13.7 0.0 0.17 12.2 0.0 1.7 1 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|20090550|ref|NP_616625.1| - 0.12 12.8 0.4 0.75 10.2 0.0 2.4 2 2 0 2 2 2 0 RNA helicase TPR_12 PF13424.6 gi|20090551|ref|NP_616626.1| - 6.3e-52 173.8 6.1 2.7e-27 94.9 0.2 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090551|ref|NP_616626.1| - 2e-30 103.8 6.1 2.6e-14 52.5 0.3 4.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090551|ref|NP_616626.1| - 5.5e-18 63.6 1.3 7.4e-08 31.9 0.1 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090551|ref|NP_616626.1| - 1.7e-16 59.3 8.4 7.1e-09 35.1 0.6 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090551|ref|NP_616626.1| - 2e-12 46.2 7.0 1.6e-06 27.8 0.3 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090551|ref|NP_616626.1| - 5e-12 45.0 4.7 1.7e-05 24.6 0.3 2.9 3 0 0 3 3 2 2 Tetratricopeptide repeat MIT PF04212.18 gi|20090551|ref|NP_616626.1| - 2.3e-08 33.9 0.4 0.0041 17.1 0.1 3.0 2 1 1 3 3 3 2 MIT (microtubule interacting and transport) domain TPR_6 PF13174.6 gi|20090551|ref|NP_616626.1| - 3.5e-06 27.3 0.1 0.025 15.2 0.0 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090551|ref|NP_616626.1| - 3.6e-06 26.6 2.2 0.0068 16.1 0.1 2.8 2 1 0 2 2 2 2 TPR repeat TPR_14 PF13428.6 gi|20090551|ref|NP_616626.1| - 3.9e-06 27.2 1.4 0.29 12.0 0.2 3.5 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090551|ref|NP_616626.1| - 2e-05 25.1 0.3 0.13 12.9 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090551|ref|NP_616626.1| - 3.3e-05 24.3 0.9 0.00013 22.5 0.4 2.2 1 1 2 3 3 3 1 Tetratricopeptide repeat EzrA PF06160.12 gi|20090551|ref|NP_616626.1| - 3.9e-05 22.0 0.1 0.074 11.2 0.0 2.2 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA TPR_17 PF13431.6 gi|20090551|ref|NP_616626.1| - 8.8e-05 22.6 5.0 0.015 15.6 0.2 3.4 3 1 0 3 3 3 2 Tetratricopeptide repeat SNAP PF14938.6 gi|20090551|ref|NP_616626.1| - 0.00037 20.0 0.0 0.00068 19.1 0.0 1.3 1 0 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_MalT PF17874.1 gi|20090551|ref|NP_616626.1| - 0.00047 19.6 0.2 0.00076 19.0 0.2 1.2 1 0 0 1 1 1 1 MalT-like TPR region TPR_9 PF13371.6 gi|20090551|ref|NP_616626.1| - 0.0012 18.9 0.1 0.0024 18.0 0.1 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090551|ref|NP_616626.1| - 0.0022 18.2 0.1 0.012 15.8 0.0 2.2 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF5113 PF17140.4 gi|20090551|ref|NP_616626.1| - 0.0024 17.7 1.1 1.2 8.9 0.1 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF5113) RPN7 PF10602.9 gi|20090551|ref|NP_616626.1| - 0.0025 17.5 0.1 2.6 7.7 0.0 2.3 1 1 1 2 2 2 2 26S proteasome subunit RPN7 TPR_5 PF12688.7 gi|20090551|ref|NP_616626.1| - 0.0046 17.2 0.0 0.64 10.3 0.0 2.4 1 1 0 2 2 2 1 Tetratrico peptide repeat TPR_15 PF13429.6 gi|20090551|ref|NP_616626.1| - 0.012 14.8 0.1 3.5 6.7 0.0 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF2225 PF09986.9 gi|20090551|ref|NP_616626.1| - 0.02 14.6 0.0 0.073 12.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Arm_3 PF16186.5 gi|20090551|ref|NP_616626.1| - 0.024 14.2 0.5 34 4.1 0.0 3.4 3 0 0 3 3 3 0 Atypical Arm repeat DUF627 PF04781.12 gi|20090551|ref|NP_616626.1| - 0.066 13.2 0.6 10 6.2 0.1 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF627) 14-3-3 PF00244.20 gi|20090551|ref|NP_616626.1| - 0.098 12.1 0.6 0.29 10.6 0.0 2.0 2 1 0 2 2 2 0 14-3-3 protein Fis1_TPR_C PF14853.6 gi|20090551|ref|NP_616626.1| - 0.11 12.6 0.5 12 6.0 0.1 2.6 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat RNA_pol_Rpb6 PF01192.22 gi|20090551|ref|NP_616626.1| - 0.11 12.4 0.0 18 5.3 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase Rpb6 Acetyltransf_1 PF00583.25 gi|20090553|ref|NP_616628.1| - 2e-09 37.7 0.0 3.3e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20090553|ref|NP_616628.1| - 2.8e-09 37.3 0.0 4.6e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20090553|ref|NP_616628.1| - 2.9e-07 30.6 0.1 5.2e-07 29.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20090553|ref|NP_616628.1| - 6.3e-05 22.9 0.0 0.00016 21.6 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_16 PF05301.11 gi|20090553|ref|NP_616628.1| - 0.043 13.6 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 CAT PF00302.18 gi|20090555|ref|NP_616630.1| - 8e-41 140.2 5.3 9.1e-41 140.0 5.3 1.0 1 0 0 1 1 1 1 Chloramphenicol acetyltransferase 2-oxoacid_dh PF00198.23 gi|20090555|ref|NP_616630.1| - 0.081 12.3 0.1 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HisKA_2 PF07568.12 gi|20090556|ref|NP_616631.1| - 2.3e-27 94.9 0.2 8e-27 93.1 0.2 2.0 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|20090556|ref|NP_616631.1| - 3e-17 62.7 0.0 8.5e-17 61.2 0.0 1.8 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|20090556|ref|NP_616631.1| - 4.8e-11 43.2 0.1 1.8e-10 41.3 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|20090556|ref|NP_616631.1| - 8.7e-07 29.6 0.0 1.8e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|20090556|ref|NP_616631.1| - 0.00084 19.6 0.1 0.0032 17.7 0.1 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|20090556|ref|NP_616631.1| - 0.0024 17.8 0.0 0.0061 16.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain RITA PF17066.5 gi|20090557|ref|NP_616632.1| - 0.02 14.5 0.0 0.027 14.0 0.0 1.1 1 0 0 1 1 1 0 RBPJ-interacting and tubulin associated protein RHH_3 PF12651.7 gi|20090557|ref|NP_616632.1| - 0.075 13.0 0.5 0.49 10.4 0.0 2.4 3 0 0 3 3 3 0 Ribbon-helix-helix domain DNA_ligase_ZBD PF03119.16 gi|20090558|ref|NP_616633.1| - 0.047 13.7 0.6 0.047 13.7 0.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|20090558|ref|NP_616633.1| - 0.071 13.0 0.6 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif Fer4 PF00037.27 gi|20090560|ref|NP_616635.1| - 1e-07 31.4 13.1 4.1e-05 23.2 3.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20090560|ref|NP_616635.1| - 1.1e-07 31.6 12.3 9.7e-05 22.3 5.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20090560|ref|NP_616635.1| - 3.1e-06 27.7 5.8 6.5e-06 26.7 5.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20090560|ref|NP_616635.1| - 4.3e-06 26.8 8.1 0.00011 22.2 0.6 2.4 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20090560|ref|NP_616635.1| - 5.8e-05 24.0 12.4 0.00044 21.1 4.0 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20090560|ref|NP_616635.1| - 0.00012 22.1 20.1 0.003 17.7 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20090560|ref|NP_616635.1| - 0.0002 21.4 11.4 0.0016 18.5 12.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20090560|ref|NP_616635.1| - 0.00088 19.6 10.5 0.066 13.7 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20090560|ref|NP_616635.1| - 0.0013 18.7 12.6 0.027 14.5 2.3 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20090560|ref|NP_616635.1| - 0.0014 19.0 2.4 0.12 12.8 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20090560|ref|NP_616635.1| - 0.0034 17.9 4.1 0.57 10.8 0.4 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20090560|ref|NP_616635.1| - 0.02 15.8 12.2 0.32 12.0 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20090560|ref|NP_616635.1| - 1.6 8.9 9.8 4.1 7.6 2.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20090560|ref|NP_616635.1| - 1.7 9.2 10.2 1 10.0 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Peptidase_U32 PF01136.19 gi|20090561|ref|NP_616636.1| - 5.9e-82 274.3 0.0 8.2e-82 273.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 GTP_EFTU_D2 PF03144.25 gi|20090561|ref|NP_616636.1| - 0.092 13.1 0.6 0.75 10.2 0.6 2.3 1 1 0 1 1 1 0 Elongation factor Tu domain 2 MCH PF02289.16 gi|20090562|ref|NP_616637.1| - 2.6e-133 444.1 0.0 2.9e-133 444.0 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Tautomerase_2 PF14552.6 gi|20090562|ref|NP_616637.1| - 0.2 11.8 0.0 0.41 10.8 0.0 1.4 1 0 0 1 1 1 0 Tautomerase enzyme DUF2124 PF09897.9 gi|20090563|ref|NP_616638.1| - 1.8e-51 173.8 0.1 2e-51 173.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DJ-1_PfpI PF01965.24 gi|20090563|ref|NP_616638.1| - 0.094 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Aminotran_1_2 PF00155.21 gi|20090564|ref|NP_616639.1| - 4.1e-61 207.2 0.0 4.7e-61 207.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|20090564|ref|NP_616639.1| - 0.0015 17.1 0.0 0.0022 16.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ThiS PF02597.20 gi|20090565|ref|NP_616640.1| - 6.4e-20 71.6 0.1 7.3e-20 71.4 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|20090565|ref|NP_616640.1| - 0.2 12.0 0.0 0.22 11.9 0.0 1.5 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) AFOR_C PF01314.18 gi|20090566|ref|NP_616641.1| - 6.3e-141 469.8 0.0 7.8e-141 469.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|20090566|ref|NP_616641.1| - 5.7e-74 248.3 0.1 1.5e-73 246.9 0.0 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ApbE PF02424.15 gi|20090567|ref|NP_616642.1| - 0.0015 18.1 0.0 0.0015 18.1 0.0 2.2 2 1 1 3 3 3 1 ApbE family PAS_3 PF08447.12 gi|20090568|ref|NP_616643.1| - 9e-19 67.6 0.0 1.8e-18 66.6 0.0 1.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|20090568|ref|NP_616643.1| - 0.022 15.0 0.1 0.082 13.2 0.0 1.9 1 1 1 2 2 2 0 PAS domain NosD PF05048.13 gi|20090569|ref|NP_616644.1| - 2.4e-26 92.5 59.2 1.6e-15 57.0 27.3 2.6 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20090569|ref|NP_616644.1| - 1e-24 87.1 49.6 6.6e-13 48.8 26.0 2.3 1 1 1 2 2 2 2 Right handed beta helix region MS_channel PF00924.18 gi|20090570|ref|NP_616645.1| - 1.3e-51 175.1 0.6 1.7e-51 174.7 0.6 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF432 PF04254.13 gi|20090571|ref|NP_616646.1| - 1.2e-42 145.0 0.0 1.9e-42 144.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) CorA PF01544.18 gi|20090573|ref|NP_616648.1| - 6.5e-74 248.9 2.8 9.1e-74 248.4 2.8 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TM_helix PF05552.12 gi|20090574|ref|NP_616649.1| - 8.1e-28 96.2 37.5 2.6e-11 43.3 5.0 4.6 4 0 0 4 4 4 3 Conserved TM helix Fasciclin PF02469.22 gi|20090575|ref|NP_616650.1| - 3.2e-62 208.4 3.3 5.2e-31 107.5 0.1 2.8 2 0 0 2 2 2 2 Fasciclin domain DUF4430 PF14478.6 gi|20090575|ref|NP_616650.1| - 2.6e-13 50.4 4.8 2e-06 28.3 0.3 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF4430) Ribosomal_L5e PF17144.4 gi|20090575|ref|NP_616650.1| - 0.15 12.0 0.9 5.8 6.9 0.2 2.4 2 0 0 2 2 2 0 Ribosomal large subunit proteins 60S L5, and 50S L18 DUF211 PF02680.14 gi|20090575|ref|NP_616650.1| - 0.55 10.4 3.8 19 5.5 1.2 3.0 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 MS_channel PF00924.18 gi|20090576|ref|NP_616651.1| - 1.5e-41 142.2 0.4 2.3e-41 141.6 0.4 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel AMP-binding_C_2 PF14535.6 gi|20090577|ref|NP_616652.1| - 1.8e-23 82.6 0.4 8.3e-23 80.5 0.1 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|20090577|ref|NP_616652.1| - 2.8e-08 32.8 0.0 4.5e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|20090577|ref|NP_616652.1| - 0.00024 20.1 0.0 0.0036 16.2 0.0 2.0 2 0 0 2 2 2 1 GH3 auxin-responsive promoter POR PF01558.18 gi|20090578|ref|NP_616653.1| - 6.8e-40 137.0 0.1 8.2e-40 136.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|20090579|ref|NP_616654.1| - 2.8e-27 95.4 0.7 4.6e-27 94.7 0.7 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|20090579|ref|NP_616654.1| - 9.7e-17 61.5 0.1 1.6e-16 60.8 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|20090579|ref|NP_616654.1| - 7.7e-09 35.0 11.3 2.2e-05 24.0 1.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20090579|ref|NP_616654.1| - 1.4e-06 28.1 11.8 0.0047 16.9 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20090579|ref|NP_616654.1| - 2.8e-06 27.1 13.6 0.003 17.6 1.0 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20090579|ref|NP_616654.1| - 3.3e-06 27.1 7.1 3.3e-06 27.1 7.1 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20090579|ref|NP_616654.1| - 7.4e-06 26.0 9.5 1.4e-05 25.1 7.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20090579|ref|NP_616654.1| - 8.9e-05 22.6 7.6 0.00019 21.6 6.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|20090579|ref|NP_616654.1| - 0.0021 17.7 0.6 0.0052 16.4 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|20090579|ref|NP_616654.1| - 0.0043 16.7 0.2 0.018 14.7 0.0 2.1 2 1 0 2 2 2 1 Transketolase, pyrimidine binding domain Fer4_15 PF13459.6 gi|20090579|ref|NP_616654.1| - 0.0053 17.5 5.4 1.3 9.8 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain PFOR_II PF17147.4 gi|20090579|ref|NP_616654.1| - 0.0081 16.4 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_4 PF12800.7 gi|20090579|ref|NP_616654.1| - 0.026 15.0 17.2 0.029 14.9 2.5 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20090579|ref|NP_616654.1| - 0.045 14.7 1.9 0.045 14.7 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20090579|ref|NP_616654.1| - 0.067 13.8 15.8 0.075 13.6 10.5 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20090579|ref|NP_616654.1| - 0.18 12.3 12.6 0.44 11.0 3.2 2.7 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20090579|ref|NP_616654.1| - 0.38 11.3 8.6 7.5 7.2 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20090579|ref|NP_616654.1| - 0.58 11.2 13.5 0.11 13.5 4.0 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20090579|ref|NP_616654.1| - 2 9.0 14.4 0.49 11.0 2.7 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20090579|ref|NP_616654.1| - 3.8 8.4 11.9 3.4 8.6 0.6 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain PCRF PF03462.18 gi|20090580|ref|NP_616655.1| - 0.09 12.6 2.2 0.23 11.3 2.2 1.6 1 0 0 1 1 1 0 PCRF domain IMS PF00817.20 gi|20090580|ref|NP_616655.1| - 0.16 11.9 2.0 0.35 10.8 0.7 2.1 2 1 1 3 3 3 0 impB/mucB/samB family Yip1 PF04893.17 gi|20090581|ref|NP_616656.1| - 4e-18 65.7 22.6 5.2e-18 65.4 22.6 1.1 1 0 0 1 1 1 1 Yip1 domain PKD PF00801.20 gi|20090582|ref|NP_616657.1| - 4.9e-15 55.1 3.2 1.2e-14 53.8 3.2 1.7 1 0 0 1 1 1 1 PKD domain NUMOD1 PF07453.13 gi|20090582|ref|NP_616657.1| - 0.25 11.7 5.2 8.9 6.7 0.1 3.8 4 0 0 4 4 4 0 NUMOD1 domain FAINT PF04385.15 gi|20090582|ref|NP_616657.1| - 1 9.5 16.5 0.41 10.8 0.2 5.6 5 2 1 7 7 7 0 Domain of unknown function, DUF529 Yip1 PF04893.17 gi|20090583|ref|NP_616658.1| - 5.6e-22 78.3 16.4 6.9e-22 78.0 16.4 1.0 1 0 0 1 1 1 1 Yip1 domain DUF4234 PF14018.6 gi|20090583|ref|NP_616658.1| - 0.057 13.6 2.7 2.5 8.3 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) Methyltransf_25 PF13649.6 gi|20090585|ref|NP_616660.1| - 3.5e-21 75.7 0.0 5.4e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090585|ref|NP_616660.1| - 8.4e-18 64.8 0.0 1.3e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090585|ref|NP_616660.1| - 2.5e-15 57.0 0.0 4e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090585|ref|NP_616660.1| - 4e-13 49.4 0.0 5.4e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090585|ref|NP_616660.1| - 1.1e-11 44.6 0.0 1.5e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|20090585|ref|NP_616660.1| - 2.3e-09 37.3 0.0 3.6e-09 36.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|20090585|ref|NP_616660.1| - 2.3e-09 36.8 0.0 2.9e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Ubie_methyltran PF01209.18 gi|20090585|ref|NP_616660.1| - 2.6e-09 36.8 0.1 4.2e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|20090585|ref|NP_616660.1| - 5.4e-08 32.5 0.0 8.5e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|20090585|ref|NP_616660.1| - 6.9e-08 31.9 0.0 9.9e-08 31.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_PK PF05891.12 gi|20090585|ref|NP_616660.1| - 5.5e-07 29.3 0.0 1.2e-06 28.3 0.0 1.5 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.11 gi|20090585|ref|NP_616660.1| - 5.8e-07 29.3 0.0 7.9e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) GidB PF02527.15 gi|20090585|ref|NP_616660.1| - 2.8e-06 26.8 0.0 4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 gi|20090585|ref|NP_616660.1| - 4.6e-05 23.4 0.0 0.00029 20.8 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Spermine_synth PF01564.17 gi|20090585|ref|NP_616660.1| - 0.00087 18.8 0.1 0.0074 15.7 0.1 2.0 1 1 0 1 1 1 1 Spermine/spermidine synthase domain Rsm22 PF09243.10 gi|20090585|ref|NP_616660.1| - 0.0027 17.0 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 PrmA PF06325.13 gi|20090585|ref|NP_616660.1| - 0.0036 16.7 0.0 0.0049 16.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|20090585|ref|NP_616660.1| - 0.0045 16.7 0.0 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_4 PF02390.17 gi|20090585|ref|NP_616660.1| - 0.035 13.6 0.0 0.069 12.6 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase tRNA-synt_1_2 PF13603.6 gi|20090585|ref|NP_616660.1| - 0.054 13.0 0.1 0.086 12.3 0.1 1.3 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 DUF938 PF06080.12 gi|20090585|ref|NP_616660.1| - 0.067 12.9 0.0 0.21 11.3 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.6 gi|20090585|ref|NP_616660.1| - 0.096 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|20090585|ref|NP_616660.1| - 0.097 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family EspA PF03433.13 gi|20090585|ref|NP_616660.1| - 0.11 12.3 0.7 0.12 12.3 0.1 1.5 2 0 0 2 2 1 0 EspA-like secreted protein malic PF00390.19 gi|20090587|ref|NP_616662.1| - 2.9e-32 111.9 0.1 6.9e-30 104.2 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|20090587|ref|NP_616662.1| - 1e-21 77.4 2.6 1e-20 74.2 2.6 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Prok-JAB PF14464.6 gi|20090588|ref|NP_616663.1| - 1.2e-09 38.0 0.0 1.9e-09 37.3 0.0 1.3 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|20090588|ref|NP_616663.1| - 0.0036 17.3 0.0 0.0047 16.9 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain BssC_TutF PF08201.11 gi|20090589|ref|NP_616664.1| - 0.31 11.1 3.9 0.14 12.2 1.4 1.9 2 1 0 2 2 2 0 BssC/TutF protein NosD PF05048.13 gi|20090590|ref|NP_616665.1| - 2e-62 210.6 58.2 1.6e-60 204.4 39.6 5.0 4 1 1 5 5 5 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20090590|ref|NP_616665.1| - 1.6e-23 83.3 71.2 1.6e-17 63.8 32.2 5.4 2 2 1 3 3 3 2 Right handed beta helix region PKD PF00801.20 gi|20090590|ref|NP_616665.1| - 1.4e-16 60.1 10.0 5.6e-12 45.3 0.6 2.5 2 0 0 2 2 2 2 PKD domain PKD_3 PF16820.5 gi|20090590|ref|NP_616665.1| - 0.079 12.7 0.6 9 6.1 0.1 2.8 2 0 0 2 2 2 0 PKD-like domain CHASE4 PF05228.13 gi|20090591|ref|NP_616666.1| - 9e-40 136.1 0.0 9.4e-37 126.3 0.0 2.3 2 0 0 2 2 2 2 CHASE4 domain HATPase_c PF02518.26 gi|20090591|ref|NP_616666.1| - 3.7e-26 91.8 0.0 8.5e-26 90.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20090591|ref|NP_616666.1| - 3.4e-19 68.6 0.0 7.6e-19 67.5 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|20090591|ref|NP_616666.1| - 3.8e-12 46.4 0.0 9.6e-12 45.1 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|20090591|ref|NP_616666.1| - 2e-09 37.7 0.1 1e-08 35.3 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|20090591|ref|NP_616666.1| - 1.3e-05 25.8 0.0 4.7e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 PAS domain PAS PF00989.25 gi|20090591|ref|NP_616666.1| - 0.00011 22.2 0.0 0.00033 20.6 0.0 1.9 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|20090591|ref|NP_616666.1| - 0.00034 20.5 0.0 0.00095 19.0 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|20090591|ref|NP_616666.1| - 0.0017 18.3 0.0 0.0034 17.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 gi|20090591|ref|NP_616666.1| - 0.0018 18.6 0.1 0.0047 17.3 0.1 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 gi|20090591|ref|NP_616666.1| - 0.0032 17.3 0.0 0.009 15.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20090591|ref|NP_616666.1| - 0.033 14.2 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 PAS domain Fungal_TACC PF12709.7 gi|20090591|ref|NP_616666.1| - 1.7 9.2 6.7 2.7 8.5 4.8 2.3 2 0 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins Pcc1 PF09341.10 gi|20090592|ref|NP_616667.1| - 1.1e-10 41.5 0.1 1.2e-10 41.3 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 FixG_C PF11614.8 gi|20090594|ref|NP_616669.1| - 0.0039 17.4 0.0 0.0094 16.2 0.0 1.6 1 0 0 1 1 1 1 IG-like fold at C-terminal of FixG, putative oxidoreductase NPCBM_assoc PF10633.9 gi|20090594|ref|NP_616669.1| - 0.0047 17.1 0.0 0.012 15.9 0.0 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase ASH PF15780.5 gi|20090594|ref|NP_616669.1| - 0.017 15.3 0.1 0.052 13.8 0.1 1.8 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin ComJ PF11033.8 gi|20090594|ref|NP_616669.1| - 0.049 13.3 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Competence protein J (ComJ) fn3_5 PF06280.12 gi|20090594|ref|NP_616669.1| - 0.16 12.7 0.3 0.16 12.7 0.3 2.6 3 1 0 3 3 3 0 Fn3-like domain DUF2117 PF09890.9 gi|20090595|ref|NP_616670.1| - 8.2e-70 234.6 0.0 1.2e-69 234.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|20090595|ref|NP_616670.1| - 0.049 12.8 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 ATP-NAD kinase MacB_PCD PF12704.7 gi|20090596|ref|NP_616671.1| - 6.7e-19 69.0 0.0 1.1e-18 68.4 0.0 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20090596|ref|NP_616671.1| - 1.9e-12 47.5 1.9 1.9e-12 47.5 1.9 2.9 3 0 0 3 3 3 1 FtsX-like permease family Wzy_C PF04932.15 gi|20090596|ref|NP_616671.1| - 2.8 7.6 7.2 1.9 8.1 0.0 2.9 2 1 0 2 2 2 0 O-Antigen ligase DUF3344 PF11824.8 gi|20090597|ref|NP_616672.1| - 9.5e-27 94.3 0.2 1.2e-26 94.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) MetallophosC PF16370.5 gi|20090597|ref|NP_616672.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 2 0 0 2 2 2 0 C terminal of Calcineurin-like phosphoesterase Trep_Strep PF09605.10 gi|20090598|ref|NP_616673.1| - 0.036 14.0 26.6 0.046 13.7 18.3 2.9 2 1 1 3 3 3 0 Hypothetical bacterial integral membrane protein (Trep_Strep) ABC_cobalt PF09819.9 gi|20090598|ref|NP_616673.1| - 0.036 14.2 18.5 0.067 13.3 15.7 2.6 1 1 1 2 2 2 0 ABC-type cobalt transport system, permease component DUF2070 PF09843.9 gi|20090598|ref|NP_616673.1| - 2.8 6.1 15.0 4.1 5.6 15.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|20090599|ref|NP_616674.1| - 1.6e-63 213.3 0.0 1.8e-31 109.5 0.0 3.1 3 1 1 4 4 3 2 ABC transporter AAA_21 PF13304.6 gi|20090599|ref|NP_616674.1| - 2.1e-12 47.5 6.3 0.00072 19.5 0.1 4.4 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090599|ref|NP_616674.1| - 5.9e-10 39.0 0.0 0.0013 18.3 0.0 3.2 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20090599|ref|NP_616674.1| - 7.8e-09 35.6 0.0 0.00032 20.6 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_16 PF13191.6 gi|20090599|ref|NP_616674.1| - 8.6e-09 36.0 3.4 5.7e-05 23.6 0.1 3.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|20090599|ref|NP_616674.1| - 3.8e-08 33.0 0.0 0.0023 17.6 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20090599|ref|NP_616674.1| - 5.3e-07 30.3 0.0 0.014 15.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|20090599|ref|NP_616674.1| - 7e-07 29.6 2.5 0.031 14.5 0.0 3.9 4 1 0 4 4 3 2 AAA domain AAA_25 PF13481.6 gi|20090599|ref|NP_616674.1| - 1.1e-06 28.4 0.5 0.016 14.7 0.0 3.3 4 0 0 4 4 3 2 AAA domain AAA PF00004.29 gi|20090599|ref|NP_616674.1| - 4.2e-05 24.0 0.1 0.18 12.2 0.0 3.6 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|20090599|ref|NP_616674.1| - 4.6e-05 22.9 0.0 0.017 14.5 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|20090599|ref|NP_616674.1| - 4.6e-05 24.0 0.7 0.027 15.0 0.0 3.5 4 0 0 4 4 3 1 AAA domain Rad17 PF03215.15 gi|20090599|ref|NP_616674.1| - 4.7e-05 23.4 0.0 0.00021 21.3 0.0 2.0 2 0 0 2 2 2 1 Rad17 P-loop domain TsaE PF02367.17 gi|20090599|ref|NP_616674.1| - 0.00014 21.8 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|20090599|ref|NP_616674.1| - 0.00023 21.3 0.0 0.58 10.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|20090599|ref|NP_616674.1| - 0.00032 20.7 0.5 0.072 13.1 0.1 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|20090599|ref|NP_616674.1| - 0.00034 20.6 1.7 0.84 9.5 0.0 3.2 3 0 0 3 3 2 2 NACHT domain NB-ARC PF00931.22 gi|20090599|ref|NP_616674.1| - 0.0006 19.1 0.1 0.37 9.9 0.0 2.6 3 0 0 3 3 2 1 NB-ARC domain AAA_24 PF13479.6 gi|20090599|ref|NP_616674.1| - 0.00066 19.5 0.4 3.3 7.4 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|20090599|ref|NP_616674.1| - 0.00095 18.9 0.0 1.3 8.8 0.0 2.7 2 2 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|20090599|ref|NP_616674.1| - 0.00097 18.9 0.2 4.4 7.0 0.0 3.5 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_15 PF13175.6 gi|20090599|ref|NP_616674.1| - 0.0014 18.4 0.0 1.3 8.7 0.0 2.6 3 0 0 3 3 3 2 AAA ATPase domain RNA_helicase PF00910.22 gi|20090599|ref|NP_616674.1| - 0.0019 18.5 0.0 0.41 11.1 0.0 2.6 2 0 0 2 2 2 1 RNA helicase TniB PF05621.11 gi|20090599|ref|NP_616674.1| - 0.0052 16.2 1.2 22 4.4 0.0 4.5 4 1 1 5 5 5 0 Bacterial TniB protein SbcCD_C PF13558.6 gi|20090599|ref|NP_616674.1| - 0.0083 16.3 0.1 3.2 8.0 0.0 3.6 2 2 1 3 3 3 1 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 gi|20090599|ref|NP_616674.1| - 0.013 14.8 0.1 1.4 8.2 0.0 2.6 3 0 0 3 3 2 0 Zeta toxin AAA_28 PF13521.6 gi|20090599|ref|NP_616674.1| - 0.014 15.7 0.2 1.5 9.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20090599|ref|NP_616674.1| - 0.02 14.4 0.0 0.49 9.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|20090599|ref|NP_616674.1| - 0.021 14.5 0.0 0.55 9.8 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.23 gi|20090599|ref|NP_616674.1| - 0.03 14.4 0.2 4.5 7.4 0.1 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|20090599|ref|NP_616674.1| - 0.038 13.4 0.6 8.1 5.7 0.0 3.2 4 0 0 4 4 3 0 KaiC NTPase_1 PF03266.15 gi|20090599|ref|NP_616674.1| - 0.04 13.8 0.1 5.8 6.8 0.0 3.2 3 0 0 3 3 3 0 NTPase T2SSE PF00437.20 gi|20090599|ref|NP_616674.1| - 0.054 12.6 0.0 3.3 6.7 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|20090599|ref|NP_616674.1| - 0.059 13.1 0.1 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF815 PF05673.13 gi|20090599|ref|NP_616674.1| - 0.064 12.4 0.1 0.16 11.1 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF815) AAA_27 PF13514.6 gi|20090599|ref|NP_616674.1| - 0.073 12.7 0.2 4.4 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|20090599|ref|NP_616674.1| - 0.087 12.9 0.0 9 6.3 0.0 2.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|20090599|ref|NP_616674.1| - 0.1 12.5 0.0 6.4 6.7 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|20090599|ref|NP_616674.1| - 0.11 12.3 0.1 6.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_19 PF13245.6 gi|20090599|ref|NP_616674.1| - 0.12 12.7 0.4 5.7 7.3 0.0 3.0 3 1 0 3 3 2 0 AAA domain ABC_ATPase PF09818.9 gi|20090599|ref|NP_616674.1| - 0.14 11.0 1.3 3.8 6.2 0.0 3.0 4 0 0 4 4 3 0 Predicted ATPase of the ABC class G-alpha PF00503.20 gi|20090599|ref|NP_616674.1| - 0.14 11.3 0.0 3.9 6.5 0.0 2.3 2 0 0 2 2 2 0 G-protein alpha subunit cobW PF02492.19 gi|20090599|ref|NP_616674.1| - 0.17 11.5 0.1 15 5.1 0.1 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.12 gi|20090599|ref|NP_616674.1| - 0.19 11.6 0.0 0.49 10.2 0.0 1.7 2 0 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein CbiQ PF02361.16 gi|20090600|ref|NP_616675.1| - 2.1e-26 92.9 8.7 3.6e-26 92.1 8.7 1.4 1 1 0 1 1 1 1 Cobalt transport protein CPP1-like PF11833.8 gi|20090600|ref|NP_616675.1| - 0.42 10.2 1.6 0.77 9.4 1.6 1.3 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF3344 PF11824.8 gi|20090601|ref|NP_616676.1| - 5.9e-70 236.1 2.9 8.4e-70 235.5 2.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|20090602|ref|NP_616677.1| - 1.9e-39 134.0 0.3 3.4e-19 69.0 0.2 2.7 2 0 0 2 2 2 2 CARDB DUF3344 PF11824.8 gi|20090602|ref|NP_616677.1| - 2.2e-30 106.2 1.0 1.3e-29 103.7 0.9 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3344) Lysyl_oxidase PF01186.17 gi|20090602|ref|NP_616677.1| - 0.00059 19.6 0.4 0.24 11.1 0.0 2.4 2 0 0 2 2 2 2 Lysyl oxidase Big_1 PF02369.16 gi|20090602|ref|NP_616677.1| - 0.033 14.2 0.0 0.15 12.1 0.0 2.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF4131 PF13567.6 gi|20090602|ref|NP_616677.1| - 0.077 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3344 PF11824.8 gi|20090603|ref|NP_616678.1| - 4.1e-69 233.3 3.7 4.7e-69 233.1 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) ABC_tran PF00005.27 gi|20090604|ref|NP_616679.1| - 1.4e-32 113.1 0.0 1.8e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20090604|ref|NP_616679.1| - 6.9e-08 32.2 0.2 9e-06 25.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20090604|ref|NP_616679.1| - 8.1e-05 22.6 0.1 0.071 12.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20090604|ref|NP_616679.1| - 0.00034 20.3 0.0 0.00081 19.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20090604|ref|NP_616679.1| - 0.00042 20.3 0.0 0.00082 19.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|20090604|ref|NP_616679.1| - 0.00093 19.6 0.0 0.0016 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|20090604|ref|NP_616679.1| - 0.057 12.6 0.1 0.48 9.6 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|20090604|ref|NP_616679.1| - 0.1 12.8 0.9 0.29 11.3 0.9 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|20090604|ref|NP_616679.1| - 0.1 12.9 0.0 0.49 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|20090604|ref|NP_616679.1| - 0.15 10.8 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein DUF3344 PF11824.8 gi|20090605|ref|NP_616680.1| - 3e-68 230.5 12.4 3e-68 230.5 12.4 3.7 4 0 0 4 4 4 1 Protein of unknown function (DUF3344) NosD PF05048.13 gi|20090605|ref|NP_616680.1| - 1.4e-35 122.7 22.6 5.8e-35 120.7 22.6 2.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) PKD PF00801.20 gi|20090605|ref|NP_616680.1| - 5.3e-29 99.9 20.9 8e-15 54.4 3.4 3.6 3 0 0 3 3 3 2 PKD domain CARDB PF07705.11 gi|20090605|ref|NP_616680.1| - 7.8e-21 74.2 8.0 7.8e-21 74.2 8.0 3.7 4 1 0 4 4 4 1 CARDB Beta_helix PF13229.6 gi|20090605|ref|NP_616680.1| - 1.1e-11 44.8 24.9 1.1e-11 44.8 24.9 3.7 3 2 1 4 4 4 2 Right handed beta helix region EF-hand_6 PF13405.6 gi|20090605|ref|NP_616680.1| - 0.0079 16.1 0.8 0.047 13.6 0.3 2.6 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.32 gi|20090605|ref|NP_616680.1| - 0.013 15.0 1.2 0.013 15.0 1.2 2.5 3 0 0 3 3 3 0 EF hand PKD_3 PF16820.5 gi|20090605|ref|NP_616680.1| - 0.016 15.0 3.2 1.7 8.4 0.3 2.6 2 0 0 2 2 2 0 PKD-like domain EF-hand_8 PF13833.6 gi|20090605|ref|NP_616680.1| - 0.32 10.9 2.3 0.85 9.5 2.3 1.8 1 0 0 1 1 1 0 EF-hand domain pair DUF3344 PF11824.8 gi|20090606|ref|NP_616681.1| - 1e-114 382.9 47.5 2.1e-64 217.9 19.7 5.3 5 1 1 6 6 6 2 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|20090606|ref|NP_616681.1| - 5.1e-19 68.4 7.2 5.1e-19 68.4 7.2 4.6 3 1 1 4 4 4 1 CARDB PKD PF00801.20 gi|20090606|ref|NP_616681.1| - 6.9e-18 64.3 29.9 3.1e-14 52.6 5.4 4.3 4 0 0 4 4 4 2 PKD domain BNR PF02012.20 gi|20090606|ref|NP_616681.1| - 0.002 17.8 0.7 70 4.1 0.0 4.8 4 0 0 4 4 4 0 BNR/Asp-box repeat KSHV_K1 PF11049.8 gi|20090606|ref|NP_616681.1| - 0.044 13.7 3.4 9 6.3 0.1 3.6 4 0 0 4 4 4 0 Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus PKD_3 PF16820.5 gi|20090606|ref|NP_616681.1| - 2.1 8.1 7.9 2.7 7.8 0.3 3.6 4 0 0 4 4 4 0 PKD-like domain Y_Y_Y PF07495.13 gi|20090606|ref|NP_616681.1| - 3.2 7.8 10.3 1.1 9.3 0.2 3.6 3 0 0 3 3 3 0 Y_Y_Y domain DUF3344 PF11824.8 gi|20090607|ref|NP_616682.1| - 4.6e-70 236.4 17.0 4.6e-70 236.4 17.0 4.0 4 1 0 4 4 3 1 Protein of unknown function (DUF3344) NosD PF05048.13 gi|20090607|ref|NP_616682.1| - 1.6e-40 138.9 26.4 1.6e-40 138.9 26.4 3.3 3 1 0 3 3 3 1 Periplasmic copper-binding protein (NosD) PKD PF00801.20 gi|20090607|ref|NP_616682.1| - 1.1e-37 127.7 36.1 2e-14 53.2 5.2 4.7 4 0 0 4 4 4 3 PKD domain CARDB PF07705.11 gi|20090607|ref|NP_616682.1| - 9e-19 67.6 7.9 9e-19 67.6 7.9 4.8 4 1 0 4 4 4 1 CARDB Beta_helix PF13229.6 gi|20090607|ref|NP_616682.1| - 7.9e-08 32.3 23.1 7.9e-08 32.3 23.1 5.3 4 3 0 4 4 2 1 Right handed beta helix region PKD_3 PF16820.5 gi|20090607|ref|NP_616682.1| - 0.0013 18.4 14.5 0.39 10.5 0.2 4.7 5 0 0 5 5 5 3 PKD-like domain EF-hand_1 PF00036.32 gi|20090607|ref|NP_616682.1| - 0.013 15.0 1.2 0.013 15.0 1.2 3.9 6 0 0 6 6 5 0 EF hand EF-hand_6 PF13405.6 gi|20090607|ref|NP_616682.1| - 0.049 13.6 0.3 0.049 13.6 0.3 3.9 4 0 0 4 4 4 0 EF-hand domain SSB PF00436.25 gi|20090607|ref|NP_616682.1| - 0.089 12.8 3.1 17 5.6 0.1 3.8 3 0 0 3 3 3 0 Single-strand binding protein family DUF1727 PF08353.10 gi|20090607|ref|NP_616682.1| - 0.095 12.6 1.6 17 5.4 0.0 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF1727) CopC PF04234.12 gi|20090607|ref|NP_616682.1| - 0.11 13.5 2.2 36 5.5 0.1 3.9 3 0 0 3 3 3 0 CopC domain DUF1939 PF09154.10 gi|20090607|ref|NP_616682.1| - 0.27 11.4 6.1 5.5 7.2 0.0 4.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1939) Dockerin_1 PF00404.18 gi|20090607|ref|NP_616682.1| - 0.31 11.3 4.0 0.98 9.7 0.1 3.4 3 0 0 3 3 3 0 Dockerin type I domain DDE_Tnp_1 PF01609.21 gi|20090608|ref|NP_616683.1| - 0.0007 19.3 0.1 0.00086 19.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain Adenyl_cycl_N PF12633.7 gi|20090608|ref|NP_616683.1| - 0.031 14.2 0.7 0.042 13.7 0.7 1.3 1 1 0 1 1 1 0 Adenylate cyclase NT domain DUF3344 PF11824.8 gi|20090609|ref|NP_616684.1| - 1.7e-70 237.8 14.7 1.7e-70 237.8 14.7 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3344) Top6b_C PF18000.1 gi|20090610|ref|NP_616685.1| - 6.9e-05 23.0 0.1 0.00021 21.4 0.1 1.9 1 1 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF11 PF01345.18 gi|20090610|ref|NP_616685.1| - 0.0019 18.5 0.1 0.016 15.5 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function DUF11 DUF4139 PF13598.6 gi|20090610|ref|NP_616685.1| - 0.1 12.3 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) DUF4352 PF11611.8 gi|20090610|ref|NP_616685.1| - 0.91 9.8 7.0 16 5.8 0.0 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4352) DUF3344 PF11824.8 gi|20090611|ref|NP_616686.1| - 2.7e-55 188.0 8.7 2.7e-55 188.0 8.7 2.5 1 1 2 3 3 3 1 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|20090611|ref|NP_616686.1| - 4.8e-24 84.6 2.8 1.1e-23 83.4 0.1 3.0 3 1 1 4 4 4 1 CARDB DUF4369 PF14289.6 gi|20090611|ref|NP_616686.1| - 0.007 16.9 0.1 6.3 7.4 0.1 3.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4369) Big_7 PF17957.1 gi|20090611|ref|NP_616686.1| - 0.17 12.7 6.5 0.51 11.1 0.5 3.8 3 1 0 3 3 3 0 Bacterial Ig domain Glucodextran_B PF09136.10 gi|20090611|ref|NP_616686.1| - 0.24 11.8 2.2 0.85 10.0 0.3 2.8 3 1 1 4 4 4 0 Glucodextranase, domain B DUF3344 PF11824.8 gi|20090612|ref|NP_616687.1| - 8.2e-70 235.6 13.7 8.2e-70 235.6 13.7 3.7 3 1 0 3 3 3 1 Protein of unknown function (DUF3344) PKD PF00801.20 gi|20090612|ref|NP_616687.1| - 5.6e-54 179.9 53.2 2.2e-14 53.1 5.1 6.3 6 0 0 6 6 6 5 PKD domain CARDB PF07705.11 gi|20090612|ref|NP_616687.1| - 3.6e-20 72.1 7.3 3.6e-20 72.1 7.3 5.6 6 1 0 6 6 6 1 CARDB PKD_3 PF16820.5 gi|20090612|ref|NP_616687.1| - 1.8e-05 24.4 20.4 0.18 11.6 0.3 5.4 5 0 0 5 5 5 3 PKD-like domain MG2 PF01835.19 gi|20090612|ref|NP_616687.1| - 6.5e-05 23.3 10.6 0.33 11.4 0.1 5.4 6 0 0 6 6 6 2 MG2 domain EF-hand_1 PF00036.32 gi|20090612|ref|NP_616687.1| - 0.012 15.1 1.2 0.012 15.1 1.2 4.9 6 0 0 6 6 6 0 EF hand EF-hand_6 PF13405.6 gi|20090612|ref|NP_616687.1| - 0.044 13.7 0.3 0.044 13.7 0.3 4.7 5 0 0 5 5 5 0 EF-hand domain DUF5325 PF17259.2 gi|20090612|ref|NP_616687.1| - 0.11 12.4 0.6 0.21 11.5 0.6 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5325) TTc_toxin_rep PF18807.1 gi|20090612|ref|NP_616687.1| - 0.14 12.0 3.0 8.4 6.3 0.0 3.7 3 0 0 3 3 3 0 Tripartite Tc toxins repeat VCBS PF13517.6 gi|20090612|ref|NP_616687.1| - 1.8 9.2 21.5 6.2 7.5 0.2 7.1 5 1 1 6 6 6 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PKD PF00801.20 gi|20090613|ref|NP_616688.1| - 3.7e-208 673.9 235.2 1.2e-13 50.7 4.5 20.6 20 0 0 20 20 20 18 PKD domain DUF3344 PF11824.8 gi|20090613|ref|NP_616688.1| - 4.6e-128 426.7 31.9 3.5e-79 266.3 11.6 10.2 11 3 0 11 11 8 2 Protein of unknown function (DUF3344) PQQ_3 PF13570.6 gi|20090613|ref|NP_616688.1| - 3.5e-69 227.7 29.5 3e-08 33.9 0.1 11.1 9 0 0 9 9 9 8 PQQ-like domain DUF2341 PF10102.9 gi|20090613|ref|NP_616688.1| - 4.3e-49 165.0 18.0 1.4e-16 60.8 0.0 6.6 6 0 0 6 6 4 3 Domain of unknown function (DUF2341) PQQ PF01011.21 gi|20090613|ref|NP_616688.1| - 7.8e-41 136.1 28.6 3.9e-06 26.5 0.1 9.8 9 0 0 9 9 9 7 PQQ enzyme repeat CARDB PF07705.11 gi|20090613|ref|NP_616688.1| - 6.7e-21 74.5 4.5 6.7e-21 74.5 4.5 9.9 10 1 1 12 12 11 1 CARDB PKD_3 PF16820.5 gi|20090613|ref|NP_616688.1| - 1.5e-17 63.1 85.8 0.11 12.2 0.5 18.3 18 0 0 18 18 18 13 PKD-like domain Big_2 PF02368.18 gi|20090613|ref|NP_616688.1| - 9.2e-13 47.9 16.6 5.8e-10 38.9 6.9 7.5 7 0 0 7 7 6 2 Bacterial Ig-like domain (group 2) MG2 PF01835.19 gi|20090613|ref|NP_616688.1| - 0.0031 17.9 52.3 15 6.1 0.0 15.8 18 0 0 18 18 16 0 MG2 domain EF-hand_1 PF00036.32 gi|20090613|ref|NP_616688.1| - 0.014 14.9 1.2 0.051 13.1 1.2 2.1 1 0 0 1 1 1 0 EF hand EF-hand_6 PF13405.6 gi|20090613|ref|NP_616688.1| - 0.031 14.2 0.3 0.18 11.8 0.3 2.4 1 0 0 1 1 1 0 EF-hand domain HCV_core PF01542.18 gi|20090613|ref|NP_616688.1| - 0.075 13.4 0.2 1.7 9.1 0.0 3.1 3 0 0 3 3 3 0 Hepatitis C virus core protein fn3_6 PF17766.1 gi|20090613|ref|NP_616688.1| - 2.8 8.2 11.8 1.7 8.9 0.9 5.3 4 0 0 4 4 4 0 Fibronectin type-III domain NikR_C PF08753.11 gi|20090614|ref|NP_616689.1| - 1.4e-27 95.7 1.3 1.8e-27 95.3 1.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|20090614|ref|NP_616689.1| - 2.8e-09 36.5 0.0 5.2e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|20090614|ref|NP_616689.1| - 0.037 14.2 0.0 0.081 13.0 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system PKD PF00801.20 gi|20090615|ref|NP_616690.1| - 2.2e-54 181.2 50.5 3.1e-15 55.8 6.0 6.8 5 1 1 6 6 6 4 PKD domain CARDB PF07705.11 gi|20090615|ref|NP_616690.1| - 1.9e-25 89.1 2.4 1.9e-25 89.1 2.4 5.8 5 1 1 6 6 6 1 CARDB PKD_3 PF16820.5 gi|20090615|ref|NP_616690.1| - 2e-08 33.9 12.6 0.023 14.5 0.6 5.0 4 0 0 4 4 4 4 PKD-like domain MG2 PF01835.19 gi|20090615|ref|NP_616690.1| - 3.9e-05 24.0 10.8 3.2 8.3 0.2 5.8 6 0 0 6 6 6 2 MG2 domain Y_Y_Y PF07495.13 gi|20090615|ref|NP_616690.1| - 5.6e-05 23.0 16.5 3.4 7.7 0.0 5.7 5 0 0 5 5 5 3 Y_Y_Y domain PapC_N PF13954.6 gi|20090615|ref|NP_616690.1| - 0.0035 17.3 2.9 0.64 10.0 0.0 4.4 4 1 1 5 5 5 1 PapC N-terminal domain DUF5640 PF18692.1 gi|20090615|ref|NP_616690.1| - 0.019 15.0 7.6 0.49 10.5 0.2 3.6 4 0 0 4 4 4 0 Family of unknown function (DUF5640) DUF1727 PF08353.10 gi|20090615|ref|NP_616690.1| - 0.029 14.3 9.3 6.5 6.7 0.1 4.4 1 1 2 4 4 4 0 Domain of unknown function (DUF1727) SSB PF00436.25 gi|20090615|ref|NP_616690.1| - 0.056 13.5 9.1 14 5.8 0.1 4.4 4 0 0 4 4 4 0 Single-strand binding protein family VCBS PF13517.6 gi|20090615|ref|NP_616690.1| - 0.071 13.7 0.7 27 5.5 0.1 4.1 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF4625 PF15418.6 gi|20090615|ref|NP_616690.1| - 0.63 10.3 5.2 26 5.1 0.0 4.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4625) LAP1C PF05609.12 gi|20090616|ref|NP_616691.1| - 0.012 14.7 4.7 0.015 14.4 4.7 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) BUD22 PF09073.10 gi|20090616|ref|NP_616691.1| - 2.5 7.4 17.6 3.1 7.0 17.6 1.1 1 0 0 1 1 1 0 BUD22 DUF3344 PF11824.8 gi|20090617|ref|NP_616692.1| - 3.7e-210 696.0 63.4 2.1e-87 293.3 13.2 5.5 6 1 0 6 6 6 3 Protein of unknown function (DUF3344) PKD PF00801.20 gi|20090617|ref|NP_616692.1| - 2.9e-54 180.8 45.5 1.9e-15 56.4 5.1 5.9 5 0 0 5 5 5 4 PKD domain CARDB PF07705.11 gi|20090617|ref|NP_616692.1| - 2.9e-39 133.4 23.2 4.9e-22 78.1 6.6 5.8 6 0 0 6 6 6 2 CARDB PKD_3 PF16820.5 gi|20090617|ref|NP_616692.1| - 2e-05 24.2 20.0 0.45 10.3 0.6 5.5 6 0 0 6 6 6 4 PKD-like domain EF-hand_6 PF13405.6 gi|20090617|ref|NP_616692.1| - 0.01 15.7 4.5 0.075 13.0 0.3 3.2 3 0 0 3 3 3 0 EF-hand domain Dockerin_1 PF00404.18 gi|20090617|ref|NP_616692.1| - 0.11 12.7 1.3 1.6 9.0 0.1 2.9 2 0 0 2 2 2 0 Dockerin type I domain MG2 PF01835.19 gi|20090617|ref|NP_616692.1| - 0.71 10.4 7.7 0.43 11.1 0.1 4.3 5 0 0 5 5 5 0 MG2 domain EF-hand_8 PF13833.6 gi|20090617|ref|NP_616692.1| - 2.7 7.9 6.3 1.3 8.9 2.3 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|20090617|ref|NP_616692.1| - 2.9 7.7 13.4 0.021 14.4 1.2 3.1 3 0 0 3 3 3 0 EF hand DUF3344 PF11824.8 gi|20090618|ref|NP_616693.1| - 1.3e-155 517.1 42.4 1e-86 291.1 11.9 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF3344) PKD PF00801.20 gi|20090618|ref|NP_616693.1| - 9.2e-23 79.9 22.8 4.1e-12 45.8 4.9 4.0 4 0 0 4 4 4 2 PKD domain CARDB PF07705.11 gi|20090618|ref|NP_616693.1| - 4.4e-20 71.8 8.6 4.4e-20 71.8 8.6 4.0 4 0 0 4 4 4 1 CARDB MG2 PF01835.19 gi|20090618|ref|NP_616693.1| - 0.0012 19.3 1.1 0.27 11.7 0.1 3.0 2 0 0 2 2 2 1 MG2 domain PKD_3 PF16820.5 gi|20090618|ref|NP_616693.1| - 0.0028 17.3 7.5 0.8 9.5 0.2 3.6 3 0 0 3 3 3 2 PKD-like domain UPF0560 PF10577.9 gi|20090618|ref|NP_616693.1| - 0.0087 14.6 0.7 0.023 13.3 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0560 MG4 PF17789.1 gi|20090618|ref|NP_616693.1| - 0.086 13.0 0.9 0.65 10.2 0.1 3.0 3 0 0 3 3 3 0 Macroglobulin domain MG4 EF-hand_1 PF00036.32 gi|20090618|ref|NP_616693.1| - 0.4 10.3 2.9 3.4 7.4 0.4 2.7 2 0 0 2 2 2 0 EF hand EF-hand_6 PF13405.6 gi|20090618|ref|NP_616693.1| - 0.46 10.6 3.5 6.7 6.9 0.4 2.9 2 0 0 2 2 2 0 EF-hand domain DUF3344 PF11824.8 gi|20090619|ref|NP_616694.1| - 1.3e-145 484.2 47.7 2.2e-76 257.1 16.3 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|20090619|ref|NP_616694.1| - 3.9e-21 75.2 2.4 3.9e-21 75.2 2.4 3.9 4 0 0 4 4 4 1 CARDB ASH PF15780.5 gi|20090619|ref|NP_616694.1| - 0.034 14.3 4.6 0.071 13.3 0.1 3.5 4 0 0 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin TMEM131_like PF12371.8 gi|20090619|ref|NP_616694.1| - 0.074 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Transmembrane protein 131-like Bactofilin PF04519.13 gi|20090619|ref|NP_616694.1| - 0.081 13.2 2.5 1.3 9.4 0.3 3.7 4 0 0 4 4 4 0 Polymer-forming cytoskeletal DUF1638 PF07796.11 gi|20090620|ref|NP_616695.1| - 6.7e-25 88.0 0.0 8.8e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) CdiA_C PF18451.1 gi|20090620|ref|NP_616695.1| - 0.11 12.7 0.7 5.3 7.3 0.0 3.4 3 2 1 4 4 4 0 Contact-dependent growth inhibition CdiA C-terminal domain DUF1638 PF07796.11 gi|20090621|ref|NP_616696.1| - 3.4e-37 128.0 0.0 4.3e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) TetR_N PF00440.23 gi|20090622|ref|NP_616697.1| - 5.5e-09 35.7 0.0 1e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.12 gi|20090622|ref|NP_616697.1| - 0.002 17.7 0.0 0.0065 16.1 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|20090622|ref|NP_616697.1| - 0.016 15.1 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TetR_C_17 PF17922.1 gi|20090622|ref|NP_616697.1| - 0.051 13.7 0.0 0.62 10.2 0.0 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain GerE PF00196.19 gi|20090622|ref|NP_616697.1| - 0.086 12.4 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|20090622|ref|NP_616697.1| - 0.096 12.5 0.0 0.39 10.6 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain TetR_C_27 PF17935.1 gi|20090622|ref|NP_616697.1| - 0.11 12.6 0.0 2.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain FMN_red PF03358.15 gi|20090623|ref|NP_616698.1| - 2e-16 60.1 0.0 3.3e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Nitroreductase PF00881.24 gi|20090624|ref|NP_616699.1| - 3.1e-33 115.2 0.0 4.8e-33 114.6 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|20090624|ref|NP_616699.1| - 7.1e-18 65.0 0.1 8e-07 28.8 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase SBDS PF01172.18 gi|20090624|ref|NP_616699.1| - 0.028 14.5 0.1 0.048 13.7 0.1 1.4 1 0 0 1 1 1 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein DNA_RNApol_7kD PF03604.13 gi|20090625|ref|NP_616700.1| - 2.8e-09 36.5 8.6 4.1e-09 36.0 8.6 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|20090625|ref|NP_616700.1| - 6.6e-05 22.4 2.2 0.16 11.6 0.6 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|20090625|ref|NP_616700.1| - 0.00023 20.4 0.7 0.0079 15.6 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|20090625|ref|NP_616700.1| - 0.0011 18.9 0.5 0.0011 18.9 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|20090625|ref|NP_616700.1| - 0.0014 18.1 1.0 0.0017 17.8 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|20090625|ref|NP_616700.1| - 0.0018 17.9 2.3 0.0031 17.2 2.3 1.4 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|20090625|ref|NP_616700.1| - 0.0022 17.9 2.5 0.0043 16.9 2.5 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.6 gi|20090625|ref|NP_616700.1| - 0.0074 16.2 2.1 0.048 13.6 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG DZR PF12773.7 gi|20090625|ref|NP_616700.1| - 0.014 15.4 1.1 0.02 14.9 1.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.11 gi|20090625|ref|NP_616700.1| - 0.016 15.1 3.1 0.1 12.5 0.1 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_6 PF14599.6 gi|20090625|ref|NP_616700.1| - 0.027 14.5 1.7 0.037 14.0 1.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon zinc-ribbons_6 PF07191.12 gi|20090625|ref|NP_616700.1| - 0.028 14.4 0.5 0.037 14.0 0.5 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|20090625|ref|NP_616700.1| - 0.035 14.4 0.8 0.047 13.9 0.8 1.2 1 0 0 1 1 1 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|20090625|ref|NP_616700.1| - 0.036 14.2 4.8 0.07 13.3 4.8 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|20090625|ref|NP_616700.1| - 0.04 13.8 4.2 0.81 9.7 4.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|20090625|ref|NP_616700.1| - 0.043 13.7 2.9 4.2 7.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNHCP PF12647.7 gi|20090625|ref|NP_616700.1| - 0.044 13.8 0.2 0.048 13.6 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain CpXC PF14353.6 gi|20090625|ref|NP_616700.1| - 0.047 13.7 1.7 0.5 10.4 0.0 2.0 1 1 1 2 2 2 0 CpXC protein YacG PF03884.14 gi|20090625|ref|NP_616700.1| - 0.049 13.4 0.6 3.3 7.5 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG DUF2072 PF09845.9 gi|20090625|ref|NP_616700.1| - 0.055 13.7 0.5 0.055 13.7 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-Di19 PF05605.12 gi|20090625|ref|NP_616700.1| - 0.064 13.6 0.4 0.45 10.9 0.1 1.9 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Anti-TRAP PF15777.5 gi|20090625|ref|NP_616700.1| - 0.079 12.9 0.1 0.082 12.9 0.1 1.1 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein C1_1 PF00130.22 gi|20090625|ref|NP_616700.1| - 0.089 12.7 1.9 0.18 11.7 2.0 1.5 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FANCL_C PF11793.8 gi|20090625|ref|NP_616700.1| - 0.098 12.8 1.7 0.74 10.0 0.1 2.0 1 1 1 2 2 2 0 FANCL C-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|20090625|ref|NP_616700.1| - 0.11 12.5 5.8 0.14 12.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DiS_P_DiS PF06750.13 gi|20090625|ref|NP_616700.1| - 0.12 12.5 2.5 5.2 7.2 0.3 2.1 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DUF1451 PF07295.11 gi|20090625|ref|NP_616700.1| - 0.13 12.3 0.7 0.15 12.1 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn_ribbon_SprT PF17283.2 gi|20090625|ref|NP_616700.1| - 0.26 11.2 8.0 1 9.3 0.3 2.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|20090625|ref|NP_616700.1| - 0.58 9.9 4.3 14 5.5 4.0 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein UPF0547 PF10571.9 gi|20090625|ref|NP_616700.1| - 0.92 9.6 7.4 6.9 6.9 7.4 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.19 gi|20090626|ref|NP_616701.1| - 1.1e-29 102.3 1.1 1.4e-29 102.0 1.1 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family HalOD2 PF18547.1 gi|20090626|ref|NP_616701.1| - 0.00094 19.0 0.7 0.00094 19.0 0.7 2.1 1 1 1 2 2 2 1 Halobacterial output domain 2 Zn_Tnp_IS1595 PF12760.7 gi|20090626|ref|NP_616701.1| - 0.0011 18.9 1.6 0.0016 18.3 1.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain C1_1 PF00130.22 gi|20090626|ref|NP_616701.1| - 0.0066 16.3 0.7 0.01 15.7 0.7 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|20090626|ref|NP_616701.1| - 0.016 15.3 0.5 3.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|20090626|ref|NP_616701.1| - 0.043 14.2 0.4 2.6 8.6 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger double domain Rep_fac-A_C PF08646.10 gi|20090626|ref|NP_616701.1| - 0.045 13.5 0.0 0.054 13.2 0.0 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain DUF951 PF06107.11 gi|20090626|ref|NP_616701.1| - 0.065 13.2 2.4 0.12 12.3 2.4 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) DUF4379 PF14311.6 gi|20090626|ref|NP_616701.1| - 0.09 13.2 1.9 0.11 12.8 0.3 1.8 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|20090626|ref|NP_616701.1| - 0.13 12.2 0.5 0.13 12.2 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|20090626|ref|NP_616701.1| - 0.24 11.3 3.0 3 7.8 0.6 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.10 gi|20090626|ref|NP_616701.1| - 0.67 9.7 3.8 3.9 7.3 1.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.6 gi|20090626|ref|NP_616701.1| - 0.75 9.8 5.5 11 6.1 0.3 2.5 2 1 1 3 3 3 0 Nudix N-terminal RNase_PH PF01138.21 gi|20090627|ref|NP_616702.1| - 3.4e-30 105.2 0.0 5.4e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|20090627|ref|NP_616702.1| - 1.2e-15 57.3 0.5 2.8e-15 56.1 0.5 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|20090628|ref|NP_616703.1| - 1.6e-09 37.9 0.1 3.1e-09 37.0 0.1 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|20090628|ref|NP_616703.1| - 4e-09 36.1 0.0 9.3e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|20090628|ref|NP_616703.1| - 1.4e-06 28.1 0.6 2.8e-06 27.1 0.6 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|20090628|ref|NP_616703.1| - 4.5e-06 26.9 0.8 9.4e-06 25.9 0.1 2.0 3 0 0 3 3 3 1 S1 RNA binding domain KH_2 PF07650.17 gi|20090628|ref|NP_616703.1| - 0.00011 22.0 0.6 0.00027 20.7 0.4 1.9 1 1 0 1 1 1 1 KH domain BHD_1 PF10403.9 gi|20090628|ref|NP_616703.1| - 0.075 12.9 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 1 SBDS PF01172.18 gi|20090629|ref|NP_616704.1| - 9.1e-24 83.4 0.0 1.6e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|20090629|ref|NP_616704.1| - 7.5e-19 67.9 0.1 1e-18 67.4 0.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|20090629|ref|NP_616704.1| - 0.045 13.8 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus Proteasome PF00227.26 gi|20090630|ref|NP_616705.1| - 1.1e-62 211.0 0.8 1.5e-62 210.5 0.8 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|20090630|ref|NP_616705.1| - 1.2e-14 53.6 0.5 4.1e-14 51.9 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF1134 PF06577.12 gi|20090631|ref|NP_616706.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1134) RNase_P_Rpp14 PF01900.19 gi|20090632|ref|NP_616707.1| - 5.1e-17 62.0 0.0 6.1e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family BMC PF00936.19 gi|20090632|ref|NP_616707.1| - 0.097 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 BMC domain RNase_P_p30 PF01876.16 gi|20090633|ref|NP_616708.1| - 1.9e-43 148.4 0.0 2.2e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.17 gi|20090634|ref|NP_616709.1| - 6.7e-34 116.7 0.7 8e-34 116.5 0.7 1.0 1 0 0 1 1 1 1 RNA binding DUF5063 PF16702.5 gi|20090634|ref|NP_616709.1| - 0.034 14.5 0.1 0.039 14.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) Ribosomal_L15e PF00827.17 gi|20090635|ref|NP_616710.1| - 1.3e-81 272.9 6.4 1.5e-81 272.7 6.4 1.0 1 0 0 1 1 1 1 Ribosomal L15 FXMRP1_C_core PF12235.8 gi|20090635|ref|NP_616710.1| - 0.11 13.1 10.8 0.22 12.2 2.1 2.1 2 0 0 2 2 2 0 Fragile X-related 1 protein core C terminal Fusion_gly PF00523.18 gi|20090636|ref|NP_616711.1| - 0.0018 16.6 2.0 0.2 9.9 0.4 2.7 1 1 2 3 3 3 2 Fusion glycoprotein F0 DUF1664 PF07889.12 gi|20090636|ref|NP_616711.1| - 0.027 14.5 1.2 0.058 13.4 0.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) EMP24_GP25L PF01105.24 gi|20090636|ref|NP_616711.1| - 0.072 13.0 0.2 0.1 12.5 0.2 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD OrfB_IS605 PF01385.19 gi|20090637|ref|NP_616712.1| - 2.8e-28 98.6 1.5 5.1e-28 97.7 1.5 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|20090637|ref|NP_616712.1| - 1.6e-21 75.5 0.5 2.9e-21 74.7 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_Tnp_1 PF01609.21 gi|20090638|ref|NP_616713.1| - 4.9e-05 23.1 0.0 9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_IS1 PF03400.13 gi|20090639|ref|NP_616714.1| - 1.5e-07 31.8 0.1 0.00033 21.0 0.1 2.2 2 0 0 2 2 2 2 IS1 transposase Topoisom_bac PF01131.20 gi|20090640|ref|NP_616715.1| - 4.3e-109 365.3 0.0 5.7e-109 364.9 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|20090640|ref|NP_616715.1| - 4.5e-16 58.9 0.2 8e-15 54.9 0.0 2.8 3 0 0 3 3 3 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|20090640|ref|NP_616715.1| - 1.6e-13 50.2 11.7 1.2e-09 37.8 0.5 3.6 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger OEP PF02321.18 gi|20090640|ref|NP_616715.1| - 0.0037 17.1 0.0 0.0071 16.2 0.0 1.4 1 0 0 1 1 1 1 Outer membrane efflux protein Auto_anti-p27 PF06677.12 gi|20090640|ref|NP_616715.1| - 0.011 15.9 0.1 0.011 15.9 0.1 2.6 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ThiC_Rad_SAM PF01964.18 gi|20090641|ref|NP_616716.1| - 1e-184 614.2 0.1 1.2e-184 614.0 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family TFX_C PF14601.6 gi|20090641|ref|NP_616716.1| - 0.06 13.3 0.1 1.1 9.2 0.1 2.4 1 1 0 1 1 1 0 DNA_binding protein, TFX, C-term Adhesin_Dr PF04619.12 gi|20090641|ref|NP_616716.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 Dr-family adhesin DUF2156 PF09924.9 gi|20090642|ref|NP_616717.1| - 1.7e-53 181.6 0.0 1.9e-53 181.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) Acetyltransf_1 PF00583.25 gi|20090643|ref|NP_616718.1| - 2.1e-17 63.4 0.1 2.6e-17 63.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20090643|ref|NP_616718.1| - 1.5e-10 41.4 0.0 2.1e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20090643|ref|NP_616718.1| - 5.3e-10 39.3 0.0 7e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20090643|ref|NP_616718.1| - 7.1e-05 22.9 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|20090643|ref|NP_616718.1| - 0.0015 18.4 0.0 0.013 15.4 0.0 2.0 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|20090643|ref|NP_616718.1| - 0.0093 16.1 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|20090643|ref|NP_616718.1| - 0.024 14.1 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase DUF3303 PF11746.8 gi|20090644|ref|NP_616719.1| - 0.00061 20.0 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) GYD PF08734.11 gi|20090644|ref|NP_616719.1| - 0.023 14.7 0.0 0.049 13.6 0.0 1.6 1 0 0 1 1 1 0 GYD domain DUF1611 PF07755.11 gi|20090644|ref|NP_616719.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Rhodanese PF00581.20 gi|20090645|ref|NP_616720.1| - 3.7e-16 59.6 0.0 3.9e-11 43.4 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|20090645|ref|NP_616720.1| - 1.1e-14 54.9 1.0 2e-14 54.1 1.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20090645|ref|NP_616720.1| - 0.00056 19.5 0.9 0.0031 17.1 0.9 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF1699 PF08004.11 gi|20090647|ref|NP_616722.1| - 1.4e-62 209.2 1.1 1.6e-62 209.0 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.14 gi|20090647|ref|NP_616722.1| - 0.047 14.0 0.0 0.077 13.3 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PAM2 PF07145.15 gi|20090647|ref|NP_616722.1| - 0.064 13.0 0.1 8.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region DUF4394 PF14339.6 gi|20090647|ref|NP_616722.1| - 0.17 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) DUF1724 PF08350.10 gi|20090648|ref|NP_616723.1| - 1.3e-15 57.3 0.0 3.4e-15 55.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20090648|ref|NP_616723.1| - 0.0084 16.0 0.1 0.019 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2568 PF10823.8 gi|20090649|ref|NP_616724.1| - 0.026 14.8 0.4 0.046 14.0 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2568) bPH_4 PF06713.11 gi|20090649|ref|NP_616724.1| - 0.041 14.0 0.1 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial PH domain Flavodoxin_1 PF00258.25 gi|20090650|ref|NP_616725.1| - 1.4e-12 48.1 0.0 2.2e-12 47.4 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|20090650|ref|NP_616725.1| - 3.7e-08 33.7 0.0 6.2e-08 33.0 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|20090650|ref|NP_616725.1| - 7.4e-05 22.5 0.0 9.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|20090650|ref|NP_616725.1| - 0.14 11.9 0.1 0.96 9.2 0.1 2.0 1 1 0 1 1 1 0 NADPH-dependent FMN reductase PAS_3 PF08447.12 gi|20090651|ref|NP_616726.1| - 2.3e-60 200.9 3.6 1e-19 70.6 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|20090651|ref|NP_616726.1| - 2.2e-17 63.1 1.0 1.4e-07 31.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|20090651|ref|NP_616726.1| - 4.8e-17 62.2 0.2 0.00077 19.7 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|20090651|ref|NP_616726.1| - 1.2e-10 41.6 2.9 0.025 14.8 0.1 3.5 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|20090651|ref|NP_616726.1| - 1e-06 29.1 0.0 2.4e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.6 gi|20090651|ref|NP_616726.1| - 7.2e-06 26.1 0.0 3.1 7.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain VanY PF02557.17 gi|20090651|ref|NP_616726.1| - 0.00013 21.7 0.1 0.04 13.7 0.0 3.3 3 0 0 3 3 3 1 D-alanyl-D-alanine carboxypeptidase R2K_2 PF18299.1 gi|20090651|ref|NP_616726.1| - 0.00082 19.3 1.1 4.2 7.2 0.0 3.5 3 0 0 3 3 3 1 ATP-grasp domain, R2K clade family 2 GAF_3 PF13492.6 gi|20090651|ref|NP_616726.1| - 0.001 19.4 0.0 0.0022 18.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|20090651|ref|NP_616726.1| - 0.0047 17.6 0.0 0.0083 16.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain Thr_dehydrat_C PF00585.18 gi|20090651|ref|NP_616726.1| - 0.012 15.4 0.1 2.8 7.8 0.0 3.6 4 0 0 4 4 4 0 C-terminal regulatory domain of Threonine dehydratase Lip_prot_lig_C PF10437.9 gi|20090651|ref|NP_616726.1| - 0.025 14.5 0.2 22 5.1 0.0 4.0 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus DUF3654 PF12376.8 gi|20090651|ref|NP_616726.1| - 0.037 14.2 1.9 0.68 10.1 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3654) DUF5609 PF18429.1 gi|20090651|ref|NP_616726.1| - 0.042 13.6 0.0 70 3.3 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF5609) Nudix_hydro PF18290.1 gi|20090651|ref|NP_616726.1| - 0.097 12.7 0.1 31 4.7 0.0 3.7 4 0 0 4 4 4 0 Nudix hydrolase domain DUF3237 PF11578.8 gi|20090651|ref|NP_616726.1| - 0.11 12.4 0.0 16 5.3 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3237) Methyltransf_25 PF13649.6 gi|20090652|ref|NP_616727.1| - 6.5e-22 78.1 0.0 9.9e-22 77.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090652|ref|NP_616727.1| - 2e-20 73.1 0.0 2.5e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090652|ref|NP_616727.1| - 3.7e-19 69.2 0.0 5.4e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090652|ref|NP_616727.1| - 1.4e-15 57.8 0.0 2.2e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090652|ref|NP_616727.1| - 2.7e-14 53.3 0.0 4.2e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090652|ref|NP_616727.1| - 5e-12 45.7 0.0 7.3e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|20090652|ref|NP_616727.1| - 3.5e-07 29.9 0.0 6.2e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|20090652|ref|NP_616727.1| - 5.2e-07 29.2 0.0 8e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|20090652|ref|NP_616727.1| - 6.8e-07 29.0 0.0 9.3e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|20090652|ref|NP_616727.1| - 9.8e-07 28.3 0.0 1.2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|20090652|ref|NP_616727.1| - 1.5e-06 27.7 0.0 2.3e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|20090652|ref|NP_616727.1| - 1.6e-06 28.0 0.0 2.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|20090652|ref|NP_616727.1| - 4.1e-05 23.3 0.0 5.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|20090652|ref|NP_616727.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|20090652|ref|NP_616727.1| - 0.00098 18.1 0.0 0.0013 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) FtsJ PF01728.19 gi|20090652|ref|NP_616727.1| - 0.0011 19.2 0.0 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase CheR PF01739.18 gi|20090652|ref|NP_616727.1| - 0.0021 17.6 0.0 0.056 12.9 0.0 2.2 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_32 PF13679.6 gi|20090652|ref|NP_616727.1| - 0.0029 17.6 0.0 0.0043 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|20090652|ref|NP_616727.1| - 0.0042 16.7 0.0 0.0077 15.9 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|20090652|ref|NP_616727.1| - 0.0056 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|20090652|ref|NP_616727.1| - 0.042 12.9 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase TPMT PF05724.11 gi|20090652|ref|NP_616727.1| - 0.082 12.6 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.20 gi|20090652|ref|NP_616727.1| - 0.092 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase ILVD_EDD PF00920.21 gi|20090653|ref|NP_616728.1| - 8e-221 734.1 0.6 9.1e-221 733.9 0.6 1.0 1 0 0 1 1 1 1 Dehydratase family MtrH PF02007.18 gi|161484936|ref|NP_616730.2| - 6.2e-119 396.5 0.1 7.1e-119 396.4 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrA PF04208.14 gi|20090656|ref|NP_616731.1| - 7.2e-57 191.8 0.1 8.6e-57 191.5 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A PTA_PTB PF01515.19 gi|20090657|ref|NP_616732.1| - 0.0011 18.4 0.0 0.55 9.5 0.0 2.2 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase AKAP28 PF14469.6 gi|20090658|ref|NP_616733.1| - 0.047 13.5 0.5 0.085 12.6 0.1 1.6 2 1 1 3 3 3 0 28 kDa A-kinase anchor REV1_C PF16727.5 gi|20090658|ref|NP_616733.1| - 0.094 13.1 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 DNA repair protein REV1 C-terminal domain ATP-cone PF03477.16 gi|20090658|ref|NP_616733.1| - 0.1 13.2 0.7 0.16 12.5 0.6 1.4 1 1 0 1 1 1 0 ATP cone domain AAA PF00004.29 gi|20090661|ref|NP_616736.1| - 6.8e-11 42.7 0.0 1.7e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20090661|ref|NP_616736.1| - 1.5e-07 31.3 0.0 3.1e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|20090661|ref|NP_616736.1| - 1.2e-05 25.4 0.0 2.6e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|20090661|ref|NP_616736.1| - 0.00035 21.0 0.0 0.00095 19.6 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20090661|ref|NP_616736.1| - 0.00038 20.7 0.5 0.47 10.7 0.0 3.6 2 2 1 3 3 3 1 AAA domain AAA_assoc_2 PF16193.5 gi|20090661|ref|NP_616736.1| - 0.00047 20.5 0.1 0.0013 19.0 0.1 1.8 1 0 0 1 1 1 1 AAA C-terminal domain IPT PF01745.16 gi|20090661|ref|NP_616736.1| - 0.0017 17.8 0.0 0.0065 15.9 0.0 1.9 2 0 0 2 2 2 1 Isopentenyl transferase AAA_14 PF13173.6 gi|20090661|ref|NP_616736.1| - 0.0019 18.2 0.0 0.0067 16.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain DNA_pol3_delta2 PF13177.6 gi|20090661|ref|NP_616736.1| - 0.006 16.4 0.1 3.3 7.5 0.0 2.9 2 1 1 3 3 3 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|20090661|ref|NP_616736.1| - 0.014 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_6 PF12774.7 gi|20090661|ref|NP_616736.1| - 0.016 14.2 0.0 0.042 12.8 0.0 1.6 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region KinB_sensor PF16767.5 gi|20090661|ref|NP_616736.1| - 0.034 14.6 0.2 0.11 12.9 0.0 2.0 2 0 0 2 2 1 0 Sensor domain of alginate biosynthesis sensor protein KinB AAA_24 PF13479.6 gi|20090661|ref|NP_616736.1| - 0.035 13.8 0.1 0.18 11.5 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|20090661|ref|NP_616736.1| - 0.042 13.4 0.0 0.18 11.4 0.0 1.8 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|20090661|ref|NP_616736.1| - 0.045 14.1 0.0 0.14 12.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|20090661|ref|NP_616736.1| - 0.045 13.3 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|20090661|ref|NP_616736.1| - 0.061 13.2 0.0 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_2 PF07724.14 gi|20090661|ref|NP_616736.1| - 0.063 13.4 0.0 0.25 11.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_30 PF13604.6 gi|20090661|ref|NP_616736.1| - 0.081 12.6 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|20090661|ref|NP_616736.1| - 0.093 12.7 0.0 0.48 10.4 0.0 2.1 1 1 1 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF1798 PF08807.10 gi|20090661|ref|NP_616736.1| - 0.099 12.8 0.1 0.27 11.4 0.1 1.8 1 0 0 1 1 1 0 Bacterial domain of unknown function (DUF1798) AAA_5 PF07728.14 gi|20090661|ref|NP_616736.1| - 0.11 12.5 0.0 0.36 10.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HTH_45 PF14947.6 gi|20090662|ref|NP_616737.1| - 4.4e-22 77.8 0.9 6.2e-22 77.4 0.9 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix FMN_red PF03358.15 gi|20090663|ref|NP_616738.1| - 8.9e-18 64.5 0.0 1.1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20090663|ref|NP_616738.1| - 0.00012 21.8 0.0 0.00023 21.0 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold AAA PF00004.29 gi|20090664|ref|NP_616739.1| - 3.9e-96 318.5 0.0 1.5e-47 161.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|20090664|ref|NP_616739.1| - 3.3e-30 103.6 1.0 1.3e-14 53.7 0.2 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|20090664|ref|NP_616739.1| - 1.4e-27 95.7 0.0 8.3e-27 93.2 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|20090664|ref|NP_616739.1| - 7.5e-16 59.0 0.1 2.4e-07 31.3 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|20090664|ref|NP_616739.1| - 1.8e-14 53.8 0.0 3.6e-06 26.8 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|20090664|ref|NP_616739.1| - 4e-14 53.1 0.0 5.8e-08 33.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|20090664|ref|NP_616739.1| - 2.4e-13 49.6 0.5 1.8e-12 46.8 0.2 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|20090664|ref|NP_616739.1| - 2.3e-12 47.1 0.7 0.00017 21.6 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|20090664|ref|NP_616739.1| - 1.9e-10 41.1 0.3 0.0058 16.9 0.0 4.4 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|20090664|ref|NP_616739.1| - 2.9e-10 39.9 0.0 0.00035 19.9 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|20090664|ref|NP_616739.1| - 2.9e-10 40.3 0.0 3e-05 24.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|20090664|ref|NP_616739.1| - 9.6e-09 35.5 0.0 0.00077 19.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|20090664|ref|NP_616739.1| - 9.6e-09 35.2 0.0 0.0036 17.1 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|20090664|ref|NP_616739.1| - 1.7e-08 34.3 0.0 0.0035 17.1 0.0 3.4 3 1 0 3 3 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|20090664|ref|NP_616739.1| - 9.1e-08 32.2 0.3 0.065 13.2 0.0 3.9 3 1 1 4 4 4 2 NACHT domain Mg_chelatase PF01078.21 gi|20090664|ref|NP_616739.1| - 1.2e-07 31.3 0.4 0.016 14.6 0.1 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|20090664|ref|NP_616739.1| - 3.4e-07 30.9 0.0 0.042 14.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|20090664|ref|NP_616739.1| - 6.8e-07 29.9 0.0 0.011 16.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter RNA_helicase PF00910.22 gi|20090664|ref|NP_616739.1| - 1.2e-06 28.8 0.0 0.1 13.0 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|20090664|ref|NP_616739.1| - 1.7e-06 27.7 0.0 0.08 12.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 gi|20090664|ref|NP_616739.1| - 1.8e-06 27.8 0.0 0.023 14.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|20090664|ref|NP_616739.1| - 5.1e-06 26.8 0.0 0.11 12.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|20090664|ref|NP_616739.1| - 5.5e-06 26.3 0.7 0.072 13.1 0.0 3.5 3 0 0 3 3 3 2 Vps4 C terminal oligomerisation domain Parvo_NS1 PF01057.17 gi|20090664|ref|NP_616739.1| - 7.8e-06 25.2 0.0 0.022 13.9 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|20090664|ref|NP_616739.1| - 8.9e-06 25.1 0.0 0.13 11.6 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin PhoH PF02562.16 gi|20090664|ref|NP_616739.1| - 1.4e-05 24.6 0.2 0.46 9.9 0.0 3.7 3 0 0 3 3 3 2 PhoH-like protein TsaE PF02367.17 gi|20090664|ref|NP_616739.1| - 1.5e-05 25.0 0.0 0.21 11.6 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|20090664|ref|NP_616739.1| - 2.6e-05 23.7 0.2 0.73 9.1 0.0 3.3 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.11 gi|20090664|ref|NP_616739.1| - 4.7e-05 23.2 0.0 0.29 11.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|20090664|ref|NP_616739.1| - 5.3e-05 23.1 0.0 0.16 11.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|20090664|ref|NP_616739.1| - 8.5e-05 22.0 0.0 0.24 10.6 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|20090664|ref|NP_616739.1| - 0.00018 21.3 0.1 0.34 10.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|20090664|ref|NP_616739.1| - 0.0002 20.6 0.0 0.7 9.0 0.0 2.7 3 0 0 3 3 2 2 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|20090664|ref|NP_616739.1| - 0.00022 21.3 0.0 0.57 10.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_17 PF13207.6 gi|20090664|ref|NP_616739.1| - 0.0004 20.8 0.0 1.2 9.6 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|20090664|ref|NP_616739.1| - 0.00055 19.6 6.0 0.47 10.0 0.2 3.7 2 2 1 3 3 3 1 AAA domain DUF815 PF05673.13 gi|20090664|ref|NP_616739.1| - 0.00069 18.8 0.0 1 8.5 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Guanylate_kin PF00625.21 gi|20090664|ref|NP_616739.1| - 0.00075 19.2 0.1 15 5.2 0.0 4.3 2 2 2 4 4 4 0 Guanylate kinase AAA_19 PF13245.6 gi|20090664|ref|NP_616739.1| - 0.00089 19.6 0.0 1.8 8.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|20090664|ref|NP_616739.1| - 0.0012 18.8 0.7 2.7 7.9 0.0 3.5 3 1 0 3 3 2 1 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|20090664|ref|NP_616739.1| - 0.0014 18.7 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit TniB PF05621.11 gi|20090664|ref|NP_616739.1| - 0.011 15.1 0.0 5.2 6.4 0.0 3.4 4 0 0 4 4 4 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|20090664|ref|NP_616739.1| - 0.017 15.0 0.1 6.7 6.6 0.0 3.2 2 1 1 3 3 3 0 NTPase SKI PF01202.22 gi|20090664|ref|NP_616739.1| - 0.023 14.8 0.1 14 5.8 0.0 3.2 3 0 0 3 3 3 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|20090664|ref|NP_616739.1| - 0.026 14.2 0.1 6.4 6.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|20090664|ref|NP_616739.1| - 0.031 13.2 0.0 4.6 6.0 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Bac_DnaA PF00308.18 gi|20090664|ref|NP_616739.1| - 0.031 14.1 0.0 2.9 7.7 0.0 2.9 2 1 0 2 2 2 0 Bacterial dnaA protein KAP_NTPase PF07693.14 gi|20090664|ref|NP_616739.1| - 0.04 13.1 0.2 11 5.1 0.0 3.3 2 2 1 4 4 4 0 KAP family P-loop domain CPT PF07931.12 gi|20090664|ref|NP_616739.1| - 0.057 13.3 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_29 PF13555.6 gi|20090664|ref|NP_616739.1| - 0.061 13.1 0.0 17 5.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|20090664|ref|NP_616739.1| - 0.067 12.2 0.0 12 4.9 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|20090664|ref|NP_616739.1| - 0.082 12.7 0.0 13 5.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|20090664|ref|NP_616739.1| - 0.14 11.8 0.1 13 5.3 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_6 PF12774.7 gi|20090664|ref|NP_616739.1| - 0.22 10.4 0.2 14 4.5 0.0 2.8 2 1 0 3 3 3 0 Hydrolytic ATP binding site of dynein motor region MULE PF10551.9 gi|20090665|ref|NP_616740.1| - 6.1e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20090665|ref|NP_616740.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20090665|ref|NP_616740.1| - 0.023 14.7 0.2 0.063 13.3 0.1 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF659 PF04937.15 gi|20090665|ref|NP_616740.1| - 0.025 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20090665|ref|NP_616740.1| - 0.043 13.6 0.9 0.12 12.3 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20090665|ref|NP_616740.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20090665|ref|NP_616740.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20090665|ref|NP_616740.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20090665|ref|NP_616740.1| - 0.2 11.7 3.5 0.44 10.6 3.5 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20090665|ref|NP_616740.1| - 0.24 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20090665|ref|NP_616740.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger CBS PF00571.28 gi|20090666|ref|NP_616741.1| - 3.7e-17 62.5 5.4 7.6e-09 35.9 0.3 2.7 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|20090666|ref|NP_616741.1| - 1.6e-15 56.9 0.4 1.6e-14 53.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|20090666|ref|NP_616741.1| - 5.1e-12 46.0 0.1 1.1e-11 44.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|20090666|ref|NP_616741.1| - 2.2e-07 30.8 0.1 7.4e-07 29.1 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|20090666|ref|NP_616741.1| - 9.9e-05 22.1 0.1 0.00022 21.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|20090666|ref|NP_616741.1| - 0.00028 20.8 0.1 0.0017 18.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|20090666|ref|NP_616741.1| - 0.00036 20.9 0.0 0.0011 19.3 0.0 1.8 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Pou PF00157.17 gi|20090666|ref|NP_616741.1| - 0.0049 16.8 0.0 0.02 14.9 0.0 2.0 2 1 0 2 2 2 1 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 gi|20090666|ref|NP_616741.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_24 PF13412.6 gi|20090666|ref|NP_616741.1| - 0.035 13.7 0.3 0.41 10.3 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding LacI PF00356.21 gi|20090666|ref|NP_616741.1| - 0.045 13.6 2.3 4.6 7.1 0.1 2.7 2 1 0 2 2 2 0 Bacterial regulatory proteins, lacI family MarR_2 PF12802.7 gi|20090666|ref|NP_616741.1| - 0.11 12.3 0.0 0.51 10.3 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.6 gi|20090666|ref|NP_616741.1| - 0.14 12.0 0.0 8.9 6.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain Aminotran_5 PF00266.19 gi|20090667|ref|NP_616742.1| - 7.3e-45 153.5 0.0 9e-45 153.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|20090667|ref|NP_616742.1| - 0.0013 18.2 0.3 0.0039 16.6 0.1 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|20090667|ref|NP_616742.1| - 0.033 13.5 0.1 0.071 12.4 0.1 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase DMRL_synthase PF00885.19 gi|20090668|ref|NP_616743.1| - 1.7e-15 57.1 0.1 2.1e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|20090669|ref|NP_616744.1| - 4.2e-29 101.2 0.1 4.5e-29 101.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|20090670|ref|NP_616745.1| - 2.4e-67 227.7 0.0 2.7e-67 227.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|20090670|ref|NP_616745.1| - 0.0013 17.4 0.0 0.002 16.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|20090670|ref|NP_616745.1| - 0.0052 15.8 0.0 0.0087 15.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Rsbr_N PF08678.10 gi|20090670|ref|NP_616745.1| - 0.045 13.8 0.0 0.47 10.5 0.0 2.4 2 1 0 2 2 2 0 Rsbr N terminal CTP_transf_like PF01467.26 gi|20090671|ref|NP_616746.1| - 3.2e-20 72.8 0.0 3.6e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like Urm1 PF09138.11 gi|20090671|ref|NP_616746.1| - 0.006 16.9 0.0 0.0083 16.5 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) FAD_syn PF06574.12 gi|20090671|ref|NP_616746.1| - 0.016 15.1 0.1 0.06 13.2 0.1 2.1 1 1 0 1 1 1 0 FAD synthetase HIGH_NTase1 PF05636.11 gi|20090671|ref|NP_616746.1| - 0.053 12.7 0.0 5.2 6.2 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase DUF3219 PF11514.8 gi|20090671|ref|NP_616746.1| - 0.075 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3219) HcyBio PF01837.16 gi|20090672|ref|NP_616747.1| - 1.5e-141 471.3 0.1 2e-141 470.9 0.1 1.2 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|20090672|ref|NP_616747.1| - 4.6e-23 81.4 3.0 1.4e-10 41.4 0.1 3.2 3 0 0 3 3 3 2 CBS domain Fer4 PF00037.27 gi|20090673|ref|NP_616748.1| - 2.4e-15 55.6 15.8 7e-08 32.0 4.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20090673|ref|NP_616748.1| - 1.9e-10 40.3 14.3 1.4e-05 24.9 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20090673|ref|NP_616748.1| - 3.9e-10 39.2 14.0 1.2e-05 25.1 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20090673|ref|NP_616748.1| - 1.4e-09 38.0 24.9 8.7e-07 29.0 15.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20090673|ref|NP_616748.1| - 5.7e-09 36.0 11.5 0.00012 22.2 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20090673|ref|NP_616748.1| - 8.1e-09 35.9 14.7 2.1e-08 34.6 14.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20090673|ref|NP_616748.1| - 2.9e-08 34.1 6.3 0.0023 18.5 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20090673|ref|NP_616748.1| - 3.6e-08 33.7 4.9 0.0015 19.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20090673|ref|NP_616748.1| - 3.9e-08 34.1 11.9 0.00068 20.5 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|20090673|ref|NP_616748.1| - 1.8e-07 31.1 16.5 1.2e-05 25.4 17.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20090673|ref|NP_616748.1| - 2.7e-07 31.0 10.1 0.0029 18.1 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|20090673|ref|NP_616748.1| - 3.7e-05 23.9 17.7 0.0013 19.1 3.9 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20090673|ref|NP_616748.1| - 6.8e-05 23.0 12.4 0.0033 17.6 12.8 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain NIL PF09383.10 gi|20090673|ref|NP_616748.1| - 0.00019 21.2 0.0 0.00026 20.7 0.0 1.1 1 0 0 1 1 1 1 NIL domain Fer4_3 PF12798.7 gi|20090673|ref|NP_616748.1| - 0.0054 17.6 23.0 0.18 12.8 6.0 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20090673|ref|NP_616748.1| - 0.0065 17.3 13.0 0.099 13.5 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20090673|ref|NP_616748.1| - 0.13 13.1 12.5 1.7 9.5 2.9 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain DUF166 PF02593.14 gi|20090675|ref|NP_616750.1| - 3.8e-70 235.9 0.0 4.4e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function AIM24 PF01987.17 gi|20090676|ref|NP_616751.1| - 4.7e-28 98.4 0.0 5.5e-28 98.1 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF498 PF04430.14 gi|20090677|ref|NP_616752.1| - 5.8e-12 45.6 0.0 6.8e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) MS_channel PF00924.18 gi|20090678|ref|NP_616753.1| - 3e-50 170.6 1.6 4.4e-50 170.1 1.6 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|20090678|ref|NP_616753.1| - 0.022 14.8 5.0 0.022 14.8 5.0 2.3 1 1 1 2 2 2 0 Conserved TM helix DUF1129 PF06570.11 gi|20090678|ref|NP_616753.1| - 0.14 11.7 4.1 0.21 11.1 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3810 PF12725.7 gi|20090678|ref|NP_616753.1| - 1.1 8.5 3.6 1.6 8.0 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Phage_integrase PF00589.22 gi|20090679|ref|NP_616754.1| - 1.1e-22 80.6 0.0 2e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|20090679|ref|NP_616754.1| - 7.9e-10 39.1 5.8 3.3e-07 30.7 0.2 2.8 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|20090679|ref|NP_616754.1| - 3.7e-05 23.9 1.6 7.7e-05 22.9 0.3 2.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|20090679|ref|NP_616754.1| - 0.00033 20.9 3.0 0.00093 19.5 3.0 1.8 1 0 0 1 1 1 1 Phage integrase SAM-like domain DZR PF12773.7 gi|20090679|ref|NP_616754.1| - 0.00078 19.4 0.7 0.0018 18.3 0.7 1.6 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|20090679|ref|NP_616754.1| - 0.0036 16.7 2.0 0.024 14.0 2.4 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|20090679|ref|NP_616754.1| - 0.0085 15.8 0.4 0.018 14.8 0.4 1.6 1 0 0 1 1 1 1 zinc-ribbon domain FBP_C PF16571.5 gi|20090679|ref|NP_616754.1| - 0.021 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 FBP C-terminal treble-clef zinc-finger DUF3435 PF11917.8 gi|20090679|ref|NP_616754.1| - 0.029 13.3 0.0 0.041 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) zinc_ribbon_15 PF17032.5 gi|20090679|ref|NP_616754.1| - 0.057 14.2 0.1 0.16 12.7 0.1 1.8 1 0 0 1 1 1 0 zinc-ribbon family HscB_4_cys PF18256.1 gi|20090679|ref|NP_616754.1| - 2.6 7.9 6.0 0.22 11.4 0.4 2.0 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif MULE PF10551.9 gi|20090680|ref|NP_616755.1| - 2.6e-07 31.0 0.0 6.7e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain LOH1CR12 PF10158.9 gi|20090680|ref|NP_616755.1| - 0.0079 16.2 0.1 0.023 14.7 0.1 1.9 1 1 1 2 2 2 1 Tumour suppressor protein DUF659 PF04937.15 gi|20090680|ref|NP_616755.1| - 0.011 15.6 0.5 0.023 14.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) Transposase_mut PF00872.18 gi|20090680|ref|NP_616755.1| - 0.028 13.3 0.0 0.04 12.8 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_ISL3 PF01610.17 gi|20090680|ref|NP_616755.1| - 0.058 13.1 0.2 0.072 12.8 0.2 1.3 1 0 0 1 1 1 0 Transposase Prenyltransf PF01255.19 gi|20090682|ref|NP_616757.1| - 1.4e-40 139.3 0.0 1.7e-40 139.0 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Methyltransf_25 PF13649.6 gi|20090684|ref|NP_616759.1| - 4.2e-12 46.6 0.0 8.8e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20090684|ref|NP_616759.1| - 1.1e-10 41.3 0.0 1.5e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|20090684|ref|NP_616759.1| - 8.7e-10 39.1 0.0 1.5e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20090684|ref|NP_616759.1| - 2.2e-05 24.0 0.0 3.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|20090684|ref|NP_616759.1| - 2.3e-05 24.3 0.0 3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090684|ref|NP_616759.1| - 0.00014 21.6 0.0 0.00071 19.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090684|ref|NP_616759.1| - 0.0016 19.1 0.0 0.0027 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090684|ref|NP_616759.1| - 0.0018 17.8 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|20090684|ref|NP_616759.1| - 0.006 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|20090684|ref|NP_616759.1| - 0.0099 15.9 0.0 0.047 13.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|20090684|ref|NP_616759.1| - 0.053 14.5 0.0 0.16 13.0 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|20090684|ref|NP_616759.1| - 0.056 12.4 0.0 0.071 12.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.13 gi|20090684|ref|NP_616759.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|20090684|ref|NP_616759.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TrmB PF01978.19 gi|20090685|ref|NP_616760.1| - 5.6e-22 77.4 1.6 1.3e-21 76.2 0.7 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB aGPT-Pplase2 PF18724.1 gi|20090685|ref|NP_616760.1| - 0.0078 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 2 HTH_27 PF13463.6 gi|20090685|ref|NP_616760.1| - 0.08 13.4 0.0 0.22 12.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain LPD37 PF18853.1 gi|20090685|ref|NP_616760.1| - 0.16 11.5 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 37 FMN_red PF03358.15 gi|20090686|ref|NP_616761.1| - 1e-24 87.0 0.0 1.5e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20090686|ref|NP_616761.1| - 6.5e-12 45.6 0.0 9.1e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold T2SSF PF00482.23 gi|20090686|ref|NP_616761.1| - 0.084 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F Methyltransf_9 PF08003.11 gi|20090686|ref|NP_616761.1| - 0.15 11.0 0.0 0.2 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Rif1_N PF12231.8 gi|20090686|ref|NP_616761.1| - 0.27 10.2 0.5 1.2 8.0 0.1 2.1 2 1 1 3 3 3 0 Rap1-interacting factor 1 N terminal Caroten_synth PF04240.12 gi|20090687|ref|NP_616762.1| - 2.1e-08 34.3 18.7 2.1e-08 34.3 18.7 2.0 1 1 2 3 3 3 1 Carotenoid biosynthesis protein DUF131 PF01998.17 gi|20090687|ref|NP_616762.1| - 0.072 12.7 0.1 0.072 12.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF131 PKD PF00801.20 gi|20090688|ref|NP_616763.1| - 6e-26 90.1 13.9 1.6e-09 37.4 1.7 4.3 3 0 0 3 3 3 3 PKD domain Cytochrom_D1 PF02239.16 gi|20090688|ref|NP_616763.1| - 5.6e-16 58.0 7.3 2.1e-06 26.5 0.3 4.0 2 1 2 4 4 4 3 Cytochrome D1 heme domain Lactonase PF10282.9 gi|20090688|ref|NP_616763.1| - 4.1e-12 46.0 3.4 0.00022 20.6 0.0 3.9 2 1 2 4 4 4 3 Lactonase, 7-bladed beta-propeller Arylesterase PF01731.20 gi|20090688|ref|NP_616763.1| - 1.3e-07 31.7 7.3 10 6.4 0.0 6.5 3 2 3 6 6 6 3 Arylesterase NHL PF01436.21 gi|20090688|ref|NP_616763.1| - 1.4e-05 24.9 10.5 8.1 6.7 0.1 6.9 6 0 0 6 6 6 3 NHL repeat Glu_cyclase_2 PF05096.12 gi|20090688|ref|NP_616763.1| - 0.00079 18.9 0.0 0.19 11.1 0.0 3.4 2 1 0 3 3 3 1 Glutamine cyclotransferase Me-amine-dh_H PF06433.11 gi|20090688|ref|NP_616763.1| - 0.0049 15.8 10.9 0.094 11.6 1.5 4.8 2 1 2 5 5 5 1 Methylamine dehydrogenase heavy chain (MADH) Y_Y_Y PF07495.13 gi|20090688|ref|NP_616763.1| - 0.0052 16.7 2.3 2.1 8.4 0.2 3.5 3 0 0 3 3 3 2 Y_Y_Y domain PD40 PF07676.12 gi|20090688|ref|NP_616763.1| - 0.041 13.8 1.7 33 4.6 0.0 4.6 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat DUF1513 PF07433.11 gi|20090688|ref|NP_616763.1| - 0.05 12.7 0.5 2.9 6.9 0.0 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1513) Arm-DNA-bind_3 PF13356.6 gi|20090688|ref|NP_616763.1| - 0.059 13.7 0.2 32 5.0 0.1 4.9 3 1 0 3 3 3 0 Arm DNA-binding domain HEAT_2 PF13646.6 gi|20090689|ref|NP_616764.1| - 5e-120 392.2 68.1 8.8e-22 77.3 2.9 10.6 3 2 9 12 12 12 12 HEAT repeats HEAT_PBS PF03130.16 gi|20090689|ref|NP_616764.1| - 1.8e-55 180.0 25.6 5e-05 23.6 1.0 16.5 17 0 0 17 17 16 12 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20090689|ref|NP_616764.1| - 4.3e-53 172.7 16.9 0.004 17.3 0.0 17.5 17 0 0 17 17 17 11 HEAT repeat HEAT_EZ PF13513.6 gi|20090689|ref|NP_616764.1| - 5.2e-36 122.6 25.2 0.22 12.1 0.0 16.9 15 3 3 18 18 18 12 HEAT-like repeat Arm PF00514.23 gi|20090689|ref|NP_616764.1| - 5.5e-34 115.1 15.5 0.0019 18.2 0.0 16.1 16 1 1 17 17 17 5 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|20090689|ref|NP_616764.1| - 2.2e-20 73.3 48.9 3.8e-05 23.8 0.1 11.1 4 3 8 12 12 12 7 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|20090689|ref|NP_616764.1| - 4.6e-16 59.2 5.2 1.9 9.2 0.0 11.5 4 3 5 10 10 10 2 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.8 gi|20090689|ref|NP_616764.1| - 9.5e-14 51.7 28.9 0.32 11.1 0.0 11.6 4 3 7 12 12 12 6 Aconitate B N-terminal domain RasGEF_N_2 PF14663.6 gi|20090689|ref|NP_616764.1| - 1.9e-09 37.8 24.1 0.033 14.6 0.3 11.3 6 4 7 13 13 13 2 Rapamycin-insensitive companion of mTOR RasGEF_N domain NACHT PF05729.12 gi|20090689|ref|NP_616764.1| - 1.2e-08 35.0 0.0 6.2e-08 32.7 0.0 2.3 2 0 0 2 2 1 1 NACHT domain DUF3247 PF11607.8 gi|20090689|ref|NP_616764.1| - 0.0026 18.0 0.8 13 6.1 0.1 4.8 4 1 2 6 6 5 0 Protein of unknown function (DUF3247) zf-CCCH_6 PF18585.1 gi|20090689|ref|NP_616764.1| - 0.0035 17.2 24.2 20 5.2 0.0 11.6 10 4 4 14 14 13 0 Chromatin remodeling factor Mit1 C-terminal Zn finger 2 Rad17 PF03215.15 gi|20090689|ref|NP_616764.1| - 0.011 15.7 0.0 0.054 13.4 0.0 2.2 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_tran PF00005.27 gi|20090689|ref|NP_616764.1| - 0.019 15.5 5.0 0.023 15.2 0.1 3.4 3 0 0 3 3 3 0 ABC transporter AAA_22 PF13401.6 gi|20090689|ref|NP_616764.1| - 0.024 14.9 3.0 0.11 12.7 0.0 3.6 3 1 0 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|20090689|ref|NP_616764.1| - 0.026 15.0 0.2 0.026 15.0 0.2 5.6 2 2 0 4 4 1 0 AAA domain Wx5_PLAF3D7 PF09688.10 gi|20090689|ref|NP_616764.1| - 0.055 13.5 2.8 0.8 9.7 0.2 3.5 2 1 1 3 3 3 0 Protein of unknown function (Wx5_PLAF3D7) DUF2019 PF09450.10 gi|20090689|ref|NP_616764.1| - 0.1 12.5 8.6 8 6.5 0.0 5.2 5 1 0 6 6 6 0 Domain of unknown function (DUF2019) DUF2551 PF10826.8 gi|20090689|ref|NP_616764.1| - 0.11 12.7 6.1 0.96 9.7 0.0 5.2 6 1 2 8 8 5 0 Protein of unknown function (DUF2551) DUF3368 PF11848.8 gi|20090689|ref|NP_616764.1| - 0.18 11.6 14.6 8.4 6.3 0.0 7.7 9 0 0 9 9 9 0 Domain of unknown function (DUF3368) RNase_3_N PF18497.1 gi|20090689|ref|NP_616764.1| - 0.28 11.4 2.9 1.5 9.1 0.9 3.4 3 0 0 3 3 2 0 Ribonuclease III N-terminal domain GerD PF17898.1 gi|20090689|ref|NP_616764.1| - 0.41 10.6 4.3 0.86 9.6 0.4 3.6 3 0 0 3 3 2 0 Spore germination GerD central core domain Intein_splicing PF14890.6 gi|20090689|ref|NP_616764.1| - 6.4 6.7 7.8 7.5 6.5 0.3 2.9 2 0 0 2 2 2 0 Intein splicing domain PfkB PF00294.24 gi|20090690|ref|NP_616765.1| - 3.9e-44 151.2 0.0 5e-44 150.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|20090690|ref|NP_616765.1| - 0.016 14.6 0.0 0.042 13.2 0.0 1.6 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase MatE PF01554.18 gi|20090692|ref|NP_616767.1| - 1.5e-57 193.7 29.6 3e-29 101.8 10.0 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|20090692|ref|NP_616767.1| - 2.1e-13 50.5 13.3 2.2e-07 31.0 10.0 4.0 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Glyoxalase PF00903.25 gi|20090693|ref|NP_616768.1| - 3.4e-09 37.0 0.0 6.2e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|20090693|ref|NP_616768.1| - 0.0022 18.8 0.0 0.0038 18.0 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|20090693|ref|NP_616768.1| - 0.0033 17.7 0.1 0.078 13.3 0.1 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|20090693|ref|NP_616768.1| - 0.0069 16.3 0.0 0.017 15.0 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain BRCT_2 PF16589.5 gi|20090693|ref|NP_616768.1| - 0.028 14.8 0.0 0.043 14.2 0.0 1.3 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain PAS_3 PF08447.12 gi|20090694|ref|NP_616769.1| - 1.5e-162 528.4 32.6 7.1e-24 83.9 0.6 7.6 7 0 0 7 7 7 7 PAS fold PAS_9 PF13426.7 gi|20090694|ref|NP_616769.1| - 1.1e-56 189.5 9.1 8.4e-11 42.1 0.1 8.6 8 0 0 8 8 8 7 PAS domain PAS PF00989.25 gi|20090694|ref|NP_616769.1| - 5.3e-37 126.3 2.7 2.5e-08 33.9 0.1 8.7 8 1 0 8 8 8 6 PAS fold HisKA_2 PF07568.12 gi|20090694|ref|NP_616769.1| - 1.7e-33 114.6 3.5 5.5e-33 112.9 1.6 2.9 2 0 0 2 2 2 1 Histidine kinase PAS_11 PF14598.6 gi|20090694|ref|NP_616769.1| - 1.9e-23 82.7 0.1 0.0042 17.2 0.0 7.2 7 0 0 7 7 7 6 PAS domain PAS_4 PF08448.10 gi|20090694|ref|NP_616769.1| - 6.9e-20 71.3 0.0 0.031 14.5 0.0 8.5 8 1 0 8 8 8 5 PAS fold HATPase_c PF02518.26 gi|20090694|ref|NP_616769.1| - 1.5e-08 35.1 0.2 2.6e-07 31.2 0.1 2.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_6 PF08348.11 gi|20090694|ref|NP_616769.1| - 3.1e-06 27.0 1.4 1.1 9.1 0.0 5.1 6 0 0 6 6 6 1 YheO-like PAS domain HWE_HK PF07536.14 gi|20090694|ref|NP_616769.1| - 0.00018 22.2 0.5 0.00051 20.7 0.5 1.8 1 0 0 1 1 1 1 HWE histidine kinase Ribosomal_L14 PF00238.19 gi|20090694|ref|NP_616769.1| - 0.0034 17.5 0.6 26 4.9 0.0 5.1 5 0 0 5 5 5 0 Ribosomal protein L14p/L23e DDR PF08841.10 gi|20090694|ref|NP_616769.1| - 0.036 13.0 0.5 0.07 12.1 0.5 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain PAS_8 PF13188.7 gi|20090694|ref|NP_616769.1| - 0.062 13.3 0.0 56 3.9 0.0 4.7 5 0 0 5 5 4 0 PAS domain HATPase_c_2 PF13581.6 gi|20090694|ref|NP_616769.1| - 0.096 12.6 0.0 0.36 10.8 0.0 2.1 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|20090694|ref|NP_616769.1| - 0.11 12.6 0.0 6.4 7.0 0.0 3.9 3 1 0 3 3 3 0 PAS fold PQQ_2 PF13360.6 gi|20090694|ref|NP_616769.1| - 0.13 11.9 0.0 40 3.7 0.0 3.3 3 0 0 3 3 3 0 PQQ-like domain Nit_Regul_Hom PF10126.9 gi|20090694|ref|NP_616769.1| - 0.21 11.6 5.2 16 5.5 0.0 5.2 6 0 0 6 6 5 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII HAS-barrel PF09378.10 gi|20090694|ref|NP_616769.1| - 0.33 11.1 14.1 8.8 6.6 0.1 5.9 6 0 0 6 6 6 0 HAS barrel domain MSA-2c PF12238.8 gi|20090694|ref|NP_616769.1| - 0.77 9.7 8.2 0.081 12.9 1.0 3.0 3 1 0 3 3 3 0 Merozoite surface antigen 2c Viral_P18 PF04521.13 gi|20090694|ref|NP_616769.1| - 1.8 8.4 6.1 13 5.5 0.1 4.0 5 0 0 5 5 3 0 ssRNA positive strand viral 18kD cysteine rich protein Polbeta PF18765.1 gi|20090694|ref|NP_616769.1| - 2.5 8.2 7.2 9.6 6.4 0.1 4.5 5 0 0 5 5 5 0 Polymerase beta, Nucleotidyltransferase DUF1398 PF07166.11 gi|20090694|ref|NP_616769.1| - 3.5 7.7 7.7 17 5.5 0.2 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1398) Nmad4 PF18756.1 gi|20090694|ref|NP_616769.1| - 6.1 7.2 9.3 16 5.9 0.0 4.6 6 0 0 6 6 3 0 Nucleotide modification associated domain 4 YcgL PF05166.13 gi|20090694|ref|NP_616769.1| - 6.2 7.3 17.1 1.1 9.6 0.1 5.4 6 0 0 6 6 4 0 YcgL domain FecCD PF01032.18 gi|20090697|ref|NP_616772.1| - 3.1e-88 295.8 35.2 3.7e-88 295.5 35.2 1.0 1 0 0 1 1 1 1 FecCD transport family Methyltransf_11 PF08241.12 gi|20090698|ref|NP_616773.1| - 3e-24 85.5 0.0 5.2e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090698|ref|NP_616773.1| - 9.1e-22 77.6 0.0 2.5e-21 76.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090698|ref|NP_616773.1| - 1.9e-18 66.7 0.0 2.3e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090698|ref|NP_616773.1| - 3.3e-15 56.1 0.0 7.7e-15 54.9 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20090698|ref|NP_616773.1| - 2e-14 53.8 0.0 2.7e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090698|ref|NP_616773.1| - 4.7e-13 49.7 0.0 2.1e-12 47.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|20090698|ref|NP_616773.1| - 3.7e-08 33.1 0.0 5e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|20090698|ref|NP_616773.1| - 4.3e-06 26.8 0.0 5.2e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20090698|ref|NP_616773.1| - 2.8e-05 23.6 0.0 3.8e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|20090698|ref|NP_616773.1| - 0.00015 21.6 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20090698|ref|NP_616773.1| - 0.00021 20.8 0.0 0.00027 20.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|20090698|ref|NP_616773.1| - 0.00082 19.0 0.0 0.001 18.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|20090698|ref|NP_616773.1| - 0.0012 18.5 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.15 gi|20090698|ref|NP_616773.1| - 0.0013 18.1 0.0 0.0034 16.7 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Mur_ligase PF01225.25 gi|20090698|ref|NP_616773.1| - 0.018 15.3 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_16 PF10294.9 gi|20090698|ref|NP_616773.1| - 0.056 13.2 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase AdoMet_MTase PF07757.13 gi|20090698|ref|NP_616773.1| - 0.079 13.3 0.0 0.18 12.2 0.0 1.6 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase Methyltransf_18 PF12847.7 gi|20090698|ref|NP_616773.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N2227 PF07942.12 gi|20090698|ref|NP_616773.1| - 0.14 11.3 0.0 0.77 8.9 0.0 1.8 1 1 1 2 2 2 0 N2227-like protein DUF4198 PF10670.9 gi|20090699|ref|NP_616774.1| - 1.9e-25 90.5 0.0 2.5e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Peripla_BP_2 PF01497.18 gi|20090700|ref|NP_616775.1| - 6.6e-25 88.1 0.0 8.8e-25 87.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|20090700|ref|NP_616775.1| - 0.0089 16.2 1.4 0.018 15.2 1.4 1.4 1 0 0 1 1 1 1 Dockerin type I domain Cohesin PF00963.18 gi|20090701|ref|NP_616776.1| - 3.5e-12 46.8 0.8 4.9e-12 46.3 0.8 1.2 1 0 0 1 1 1 1 Cohesin domain PGF-CTERM PF18204.1 gi|20090701|ref|NP_616776.1| - 1.7e-06 27.8 0.2 1.7e-06 27.8 0.2 1.9 2 0 0 2 2 2 1 PGF-CTERM motif NPCBM PF08305.11 gi|20090701|ref|NP_616776.1| - 0.005 17.0 0.3 0.01 16.0 0.1 1.6 2 0 0 2 2 2 1 NPCBM/NEW2 domain DUF86 PF01934.17 gi|20090702|ref|NP_616777.1| - 1.1e-27 96.2 0.6 1.3e-27 96.0 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 MLD PF11647.8 gi|20090702|ref|NP_616777.1| - 0.035 14.4 0.9 0.11 12.8 0.3 2.0 3 0 0 3 3 3 0 Membrane Localization Domain FCH PF00611.23 gi|20090702|ref|NP_616777.1| - 0.21 11.9 1.7 0.84 10.0 0.0 2.3 2 1 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain Polbeta PF18765.1 gi|20090703|ref|NP_616778.1| - 3.6e-21 75.0 0.4 5.5e-21 74.5 0.4 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20090703|ref|NP_616778.1| - 2.8e-10 40.3 0.5 5.4e-10 39.4 0.5 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|20090703|ref|NP_616778.1| - 0.055 13.4 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain DUF294 PF03445.13 gi|20090703|ref|NP_616778.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 ATPase_2 PF01637.18 gi|20090704|ref|NP_616779.1| - 1.9e-14 54.1 0.7 1.9e-14 54.1 0.7 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|20090704|ref|NP_616779.1| - 9e-13 49.0 0.0 1.5e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|20090704|ref|NP_616779.1| - 2.7e-10 40.4 1.9 0.00042 20.4 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|20090704|ref|NP_616779.1| - 1.4e-08 35.2 0.0 3.5e-07 30.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|20090704|ref|NP_616779.1| - 0.0011 19.4 0.1 0.062 13.7 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.6 gi|20090704|ref|NP_616779.1| - 0.011 14.6 0.1 0.14 10.9 0.0 2.4 2 1 0 2 2 2 0 AAA-like domain DNA_pol3_finger PF17657.1 gi|20090704|ref|NP_616779.1| - 0.044 13.1 0.0 0.14 11.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial DNA polymerase III alpha subunit finger domain LysE PF01810.18 gi|20090705|ref|NP_616780.1| - 1.4e-31 109.5 12.3 1.7e-31 109.2 12.3 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 gi|20090705|ref|NP_616780.1| - 0.31 10.7 11.4 4.6 6.9 11.4 2.6 1 1 0 1 1 1 0 Integral membrane protein TerC family Phage_holin_3_3 PF16083.5 gi|20090705|ref|NP_616780.1| - 1.1 9.4 8.6 0.17 12.0 1.3 2.6 2 1 0 2 2 2 0 LydA holin phage, holin superfamily III Abhydrolase_1 PF00561.20 gi|20090706|ref|NP_616781.1| - 1.7e-09 37.7 0.0 1.8e-07 31.1 0.0 2.3 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|20090706|ref|NP_616781.1| - 0.0001 21.7 0.0 0.00038 19.8 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|20090706|ref|NP_616781.1| - 0.00032 21.4 0.0 0.00041 21.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|20090706|ref|NP_616781.1| - 0.0082 15.8 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) GHMP_kinases_C PF08544.13 gi|20090706|ref|NP_616781.1| - 0.023 15.1 0.0 0.1 13.0 0.0 2.0 2 0 0 2 2 2 0 GHMP kinases C terminal DUF726 PF05277.12 gi|20090706|ref|NP_616781.1| - 0.023 13.7 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Thioesterase PF00975.20 gi|20090706|ref|NP_616781.1| - 0.066 13.3 0.0 0.089 12.9 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain Sugar-bind PF04198.13 gi|20090706|ref|NP_616781.1| - 0.1 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Putative sugar-binding domain Lipase_3 PF01764.25 gi|20090706|ref|NP_616781.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_1 PF00561.20 gi|20090707|ref|NP_616782.1| - 6.7e-11 42.3 0.0 6.7e-10 39.0 0.0 2.2 2 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|20090707|ref|NP_616782.1| - 1.2e-05 24.8 0.0 9e-05 21.8 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|20090707|ref|NP_616782.1| - 0.013 16.1 0.0 0.02 15.5 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|20090707|ref|NP_616782.1| - 0.025 14.7 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain FSH1 PF03959.13 gi|20090707|ref|NP_616782.1| - 0.062 13.0 0.0 0.15 11.7 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) GHMP_kinases_C PF08544.13 gi|20090707|ref|NP_616782.1| - 0.13 12.7 0.0 0.88 10.0 0.0 2.1 2 1 0 2 2 2 0 GHMP kinases C terminal Abhydrolase_2 PF02230.16 gi|20090707|ref|NP_616782.1| - 0.13 12.0 0.0 0.9 9.3 0.0 2.0 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DLH PF01738.18 gi|20090707|ref|NP_616782.1| - 0.18 11.3 0.0 6.6 6.2 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family MFS_1 PF07690.16 gi|20090708|ref|NP_616783.1| - 1.1e-47 162.7 43.2 1.1e-47 162.7 43.2 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|20090708|ref|NP_616783.1| - 2.5e-11 43.1 5.5 2.5e-11 43.1 5.5 2.1 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|20090708|ref|NP_616783.1| - 1.1e-05 24.1 10.2 1.9e-05 23.3 10.1 1.4 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|20090708|ref|NP_616783.1| - 3.7e-05 22.5 23.6 0.00099 17.8 6.3 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein SecG PF03840.14 gi|20090708|ref|NP_616783.1| - 7.9 6.6 9.8 0.17 12.0 1.4 2.7 2 0 0 2 2 2 0 Preprotein translocase SecG subunit FMN_red PF03358.15 gi|20090710|ref|NP_616785.1| - 1.5e-24 86.5 0.0 1.9e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20090710|ref|NP_616785.1| - 5.5e-15 55.6 0.0 7e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|20090710|ref|NP_616785.1| - 0.00018 21.8 0.0 0.00031 21.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain ABC1 PF03109.16 gi|20090711|ref|NP_616786.1| - 2e-40 137.7 0.0 4.2e-40 136.6 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|20090711|ref|NP_616786.1| - 1.7e-06 28.1 0.0 4.2e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|20090711|ref|NP_616786.1| - 2e-05 24.1 0.0 4.6e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|20090711|ref|NP_616786.1| - 0.021 14.4 0.0 0.051 13.2 0.0 1.6 1 0 0 1 1 1 0 RIO1 family Pkinase_Tyr PF07714.17 gi|20090711|ref|NP_616786.1| - 0.028 13.7 0.0 0.14 11.5 0.0 2.0 1 1 0 1 1 1 0 Protein tyrosine kinase DUF1858 PF08984.11 gi|20090711|ref|NP_616786.1| - 0.077 13.2 0.0 0.38 11.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) DUF3232 PF11554.8 gi|20090711|ref|NP_616786.1| - 0.13 12.6 0.0 1 9.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3232) UBA_3 PF09288.10 gi|20090711|ref|NP_616786.1| - 0.35 10.7 2.1 4.2 7.3 0.0 3.3 3 1 1 4 4 4 0 Fungal ubiquitin-associated domain Lon_C PF05362.13 gi|20090712|ref|NP_616787.1| - 5.5e-91 303.7 1.1 1.1e-90 302.7 1.1 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 gi|20090712|ref|NP_616787.1| - 5.2e-22 78.7 0.2 3.3e-21 76.1 0.0 2.4 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) ChlI PF13541.6 gi|20090712|ref|NP_616787.1| - 2.5e-09 37.0 0.2 7.3e-09 35.5 0.1 1.9 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase LON_substr_bdg PF02190.16 gi|20090712|ref|NP_616787.1| - 3.2e-09 37.0 0.1 6.9e-09 35.9 0.1 1.5 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA_5 PF07728.14 gi|20090712|ref|NP_616787.1| - 5.5e-09 36.1 0.0 1.7e-08 34.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|20090712|ref|NP_616787.1| - 2.3e-07 31.3 0.1 3.4e-05 24.3 0.1 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|20090712|ref|NP_616787.1| - 3.7e-06 27.3 0.0 5.2e-05 23.5 0.0 2.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|20090712|ref|NP_616787.1| - 2.3e-05 24.2 0.1 0.00059 19.6 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein RuvB_N PF05496.12 gi|20090712|ref|NP_616787.1| - 0.00023 20.9 0.0 0.00075 19.3 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_PrkA PF08298.11 gi|20090712|ref|NP_616787.1| - 0.00052 19.0 0.0 0.001 18.1 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain Rad17 PF03215.15 gi|20090712|ref|NP_616787.1| - 0.0009 19.2 0.0 0.0023 17.9 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|20090712|ref|NP_616787.1| - 0.0012 19.4 1.4 0.024 15.2 0.1 3.5 3 1 1 4 4 3 1 AAA domain AAA_3 PF07726.11 gi|20090712|ref|NP_616787.1| - 0.0036 17.1 0.0 0.016 15.1 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|20090712|ref|NP_616787.1| - 0.0059 16.6 0.0 0.028 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|20090712|ref|NP_616787.1| - 0.0062 16.5 1.0 0.045 13.7 0.1 2.9 2 1 2 4 4 3 1 NTPase DUF815 PF05673.13 gi|20090712|ref|NP_616787.1| - 0.0064 15.7 0.0 0.019 14.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|20090712|ref|NP_616787.1| - 0.0081 15.4 0.1 0.0081 15.4 0.1 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|20090712|ref|NP_616787.1| - 0.0094 16.1 0.0 0.022 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|20090712|ref|NP_616787.1| - 0.012 15.6 0.0 0.03 14.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Birna_VP4 PF01768.16 gi|20090712|ref|NP_616787.1| - 0.014 15.2 0.2 0.031 14.1 0.2 1.5 1 0 0 1 1 1 0 Birnavirus VP4 protein AAA_30 PF13604.6 gi|20090712|ref|NP_616787.1| - 0.017 14.8 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20090712|ref|NP_616787.1| - 0.023 14.6 0.0 0.27 11.1 0.0 2.3 2 0 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.18 gi|20090712|ref|NP_616787.1| - 0.029 14.1 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|20090712|ref|NP_616787.1| - 0.039 14.4 0.0 0.21 12.0 0.0 2.4 2 0 0 2 2 1 0 RNA helicase Zeta_toxin PF06414.12 gi|20090712|ref|NP_616787.1| - 0.04 13.2 0.1 0.093 12.0 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|20090712|ref|NP_616787.1| - 0.042 13.6 0.8 0.26 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4899 PF16240.5 gi|20090712|ref|NP_616787.1| - 0.053 12.7 4.5 2.8 7.0 1.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4899) AAA_19 PF13245.6 gi|20090712|ref|NP_616787.1| - 0.055 13.8 0.1 0.15 12.4 0.1 1.8 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|20090712|ref|NP_616787.1| - 0.076 12.1 0.0 0.18 10.9 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|20090712|ref|NP_616787.1| - 0.083 12.1 1.2 0.12 11.5 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain Parvo_NS1 PF01057.17 gi|20090712|ref|NP_616787.1| - 0.13 11.3 0.0 0.33 10.0 0.0 1.6 1 1 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|20090712|ref|NP_616787.1| - 0.13 12.7 0.8 0.51 10.8 0.1 2.3 2 0 0 2 2 2 0 ABC transporter AAA_28 PF13521.6 gi|20090712|ref|NP_616787.1| - 0.14 12.4 0.0 0.37 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|20090712|ref|NP_616787.1| - 0.23 11.2 3.4 0.95 9.2 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase AAA_23 PF13476.6 gi|20090712|ref|NP_616787.1| - 0.63 10.5 9.0 0.89 10.0 0.0 2.9 1 1 1 2 2 1 0 AAA domain MarR PF01047.22 gi|20090713|ref|NP_616788.1| - 1.3e-10 41.1 0.0 2.2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|20090713|ref|NP_616788.1| - 2e-08 34.0 0.0 5.2e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|20090713|ref|NP_616788.1| - 4.5e-08 33.5 0.0 3.8e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|20090713|ref|NP_616788.1| - 0.00042 19.8 0.0 0.0025 17.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20090713|ref|NP_616788.1| - 0.00087 19.1 0.1 0.0026 17.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|20090713|ref|NP_616788.1| - 0.0019 18.3 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RuvB_C PF05491.13 gi|20090713|ref|NP_616788.1| - 0.017 15.0 0.3 1.3 8.9 0.0 2.6 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain KIP1 PF07765.12 gi|20090713|ref|NP_616788.1| - 0.022 14.9 0.5 0.076 13.1 0.0 2.1 2 1 0 2 2 2 0 KIP1-like protein T2SSE PF00437.20 gi|20090713|ref|NP_616788.1| - 0.046 12.8 0.0 0.054 12.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein UvrD-helicase PF00580.21 gi|20090714|ref|NP_616789.1| - 3.7e-21 76.0 0.0 3.7e-21 76.0 0.0 2.2 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|20090714|ref|NP_616789.1| - 1.2e-11 44.6 9.0 1.4e-08 34.5 0.5 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|20090714|ref|NP_616789.1| - 5e-08 33.4 0.0 9.5e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|20090714|ref|NP_616789.1| - 0.0012 18.6 0.0 0.67 9.6 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase UvrD_C_2 PF13538.6 gi|20090714|ref|NP_616789.1| - 0.0014 18.4 0.0 0.0051 16.6 0.0 1.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PhoH PF02562.16 gi|20090714|ref|NP_616789.1| - 0.017 14.6 0.0 0.64 9.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein UvrD-helicase PF00580.21 gi|20090715|ref|NP_616790.1| - 4.8e-11 42.8 0.0 5.4e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|20090715|ref|NP_616790.1| - 1.1e-07 32.3 0.0 1.2e-07 32.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|20090715|ref|NP_616790.1| - 0.11 12.5 0.1 0.18 11.8 0.1 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|20090715|ref|NP_616790.1| - 0.21 11.3 0.0 0.26 11.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|20090716|ref|NP_616791.1| - 4.4e-41 141.8 17.0 4.4e-41 141.8 17.0 3.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|20090716|ref|NP_616791.1| - 8.1e-22 78.4 8.3 8.1e-22 78.4 8.3 2.6 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|20090716|ref|NP_616791.1| - 6.3e-11 42.1 2.1 8.8e-08 31.8 0.1 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.19 gi|20090716|ref|NP_616791.1| - 1e-09 38.1 2.6 7.6e-08 32.1 0.3 2.5 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20090716|ref|NP_616791.1| - 2.6e-09 37.9 32.1 1.4e-07 32.2 32.1 3.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090716|ref|NP_616791.1| - 0.003 17.3 0.1 0.0078 15.9 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|20090716|ref|NP_616791.1| - 0.035 13.7 0.0 0.12 11.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain DSPc PF00782.20 gi|20090717|ref|NP_616792.1| - 2.2e-06 27.5 0.0 2.7e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|20090717|ref|NP_616792.1| - 0.00032 20.3 0.0 0.00042 20.0 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.6 gi|20090717|ref|NP_616792.1| - 0.061 13.3 0.0 0.075 13.0 0.0 1.1 1 0 0 1 1 1 0 Tyrosine phosphatase family PTPlike_phytase PF14566.6 gi|20090717|ref|NP_616792.1| - 0.2 11.8 0.0 0.29 11.2 0.0 1.2 1 0 0 1 1 1 0 Inositol hexakisphosphate Fic PF02661.18 gi|20090718|ref|NP_616793.1| - 7.6e-21 74.8 0.0 7.6e-20 71.6 0.0 2.4 2 0 0 2 2 2 1 Fic/DOC family HTH_DeoR PF08220.12 gi|20090718|ref|NP_616793.1| - 0.00015 21.4 0.0 0.00039 20.1 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF4172 PF13776.6 gi|20090718|ref|NP_616793.1| - 0.00024 21.4 0.1 0.0018 18.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4172) Fic_N PF13784.6 gi|20090718|ref|NP_616793.1| - 0.00052 20.0 1.7 0.00085 19.3 0.3 2.1 2 0 0 2 2 2 1 Fic/DOC family N-terminal HTH_IclR PF09339.10 gi|20090718|ref|NP_616793.1| - 0.021 14.6 0.0 0.063 13.1 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|20090718|ref|NP_616793.1| - 0.047 13.6 0.3 0.16 11.8 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|20090718|ref|NP_616793.1| - 0.061 13.3 0.0 0.2 11.6 0.0 2.0 1 0 0 1 1 1 0 HTH domain Penicillinase_R PF03965.16 gi|20090718|ref|NP_616793.1| - 0.078 13.3 0.0 0.34 11.3 0.0 2.2 1 0 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.16 gi|20090718|ref|NP_616793.1| - 0.12 12.2 0.2 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain Peptidase_M3 PF01432.20 gi|20090720|ref|NP_616795.1| - 2.2e-26 93.1 6.0 3.5e-26 92.5 6.0 1.3 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|20090720|ref|NP_616795.1| - 0.0081 16.4 0.1 0.035 14.4 0.1 2.2 1 0 0 1 1 1 1 Oligopeptidase F TPR_1 PF00515.28 gi|20090723|ref|NP_616798.1| - 3.7e-42 140.5 11.0 2.8e-08 33.2 0.3 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090723|ref|NP_616798.1| - 2.5e-39 130.2 16.4 2.2e-07 30.4 0.3 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090723|ref|NP_616798.1| - 6.2e-34 116.4 7.5 7.6e-13 48.9 1.6 4.9 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090723|ref|NP_616798.1| - 2.6e-31 105.7 3.9 0.00021 21.4 0.0 6.8 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090723|ref|NP_616798.1| - 3e-31 106.8 0.8 1.7e-08 34.0 0.0 6.0 3 2 3 6 6 6 4 TPR repeat TPR_8 PF13181.6 gi|20090723|ref|NP_616798.1| - 5.4e-28 94.8 7.1 1.4e-06 28.1 0.1 6.9 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090723|ref|NP_616798.1| - 2.7e-25 88.3 0.2 1.1e-06 28.6 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090723|ref|NP_616798.1| - 2.7e-24 83.8 11.5 0.00014 22.4 0.1 7.1 2 2 5 7 7 7 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090723|ref|NP_616798.1| - 8.9e-24 83.8 3.1 2.1e-06 28.1 0.1 4.7 2 2 3 5 5 5 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090723|ref|NP_616798.1| - 1.1e-19 70.4 0.1 1.8e-08 34.5 0.0 4.1 2 2 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|20090723|ref|NP_616798.1| - 7.7e-17 61.4 7.8 1.8e-07 31.3 0.3 5.4 2 1 5 7 7 7 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090723|ref|NP_616798.1| - 7.8e-17 60.7 6.4 0.014 16.0 0.0 6.7 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|20090723|ref|NP_616798.1| - 1.9e-08 33.9 2.0 0.071 12.3 0.3 3.8 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090723|ref|NP_616798.1| - 2e-08 33.7 5.0 0.26 11.4 0.1 6.2 7 0 0 7 7 6 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20090723|ref|NP_616798.1| - 2.4e-08 33.9 4.5 0.16 12.0 0.0 4.3 4 1 1 5 5 5 3 Fis1 C-terminal tetratricopeptide repeat ChAPs PF09295.10 gi|20090723|ref|NP_616798.1| - 5.9e-07 28.8 0.0 0.021 13.8 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.6 gi|20090723|ref|NP_616798.1| - 1.9e-06 28.1 0.1 0.08 13.3 0.0 3.7 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090723|ref|NP_616798.1| - 1.9e-06 27.5 9.6 0.062 13.2 0.2 5.5 7 0 0 7 7 7 2 Tetratricopeptide repeat BTAD PF03704.17 gi|20090723|ref|NP_616798.1| - 3.2e-06 27.6 6.7 0.028 14.8 0.0 3.8 3 1 0 4 4 4 2 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|20090723|ref|NP_616798.1| - 4.7e-06 25.8 1.7 0.045 12.7 0.1 3.2 1 1 2 4 4 4 4 NMDA receptor-regulated protein 1 Alkyl_sulf_dimr PF14863.6 gi|20090723|ref|NP_616798.1| - 2.2e-05 24.9 0.0 0.059 13.8 0.0 2.6 2 1 0 2 2 2 2 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|20090723|ref|NP_616798.1| - 3.7e-05 23.7 2.5 9.9 6.2 0.1 4.0 2 1 2 4 4 4 0 Putative TPR-like repeat ANAPC5 PF12862.7 gi|20090723|ref|NP_616798.1| - 0.00063 19.8 0.7 0.16 12.0 0.0 3.3 2 2 1 3 3 3 1 Anaphase-promoting complex subunit 5 DUF3856 PF12968.7 gi|20090723|ref|NP_616798.1| - 0.0043 17.1 5.0 0.71 9.9 0.1 4.3 2 2 2 5 5 5 2 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|20090723|ref|NP_616798.1| - 0.0043 16.8 0.7 0.4 10.3 0.0 3.6 2 2 2 4 4 4 1 Tetratricopeptide repeat-like domain PPR PF01535.20 gi|20090723|ref|NP_616798.1| - 0.005 17.0 6.1 3.7 8.0 0.1 4.9 5 0 0 5 5 5 1 PPR repeat FAT PF02259.23 gi|20090723|ref|NP_616798.1| - 0.038 13.2 2.2 3.6 6.7 2.2 3.5 1 1 0 1 1 1 0 FAT domain MAS20 PF02064.15 gi|20090723|ref|NP_616798.1| - 0.038 14.1 0.6 10 6.2 0.0 3.2 1 1 2 3 3 3 0 MAS20 protein import receptor APP_E2 PF12925.7 gi|20090723|ref|NP_616798.1| - 0.054 13.2 0.0 0.5 10.0 0.0 2.2 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein Paf67 PF10255.9 gi|20090723|ref|NP_616798.1| - 0.11 11.5 0.0 2.8 6.9 0.0 2.1 1 1 1 2 2 2 0 RNA polymerase I-associated factor PAF67 TruB_N PF01509.18 gi|20090723|ref|NP_616798.1| - 0.12 12.7 0.0 1.4 9.3 0.0 2.2 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) Exonuc_VII_S PF02609.16 gi|20090723|ref|NP_616798.1| - 6.7 6.9 10.9 42 4.3 0.0 4.6 6 0 0 6 6 4 0 Exonuclease VII small subunit Phosphorylase PF00343.20 gi|20090724|ref|NP_616799.1| - 5.4e-26 91.1 0.0 5.3e-19 68.0 0.0 2.7 3 1 0 3 3 3 2 Carbohydrate phosphorylase Ribosomal_S25 PF03297.15 gi|20090726|ref|NP_616801.1| - 0.0067 16.6 0.0 0.0067 16.6 0.0 1.1 1 0 0 1 1 1 1 S25 ribosomal protein HisKA_2 PF07568.12 gi|20090728|ref|NP_616803.1| - 7.4e-30 102.9 1.0 7.4e-30 102.9 1.0 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.12 gi|20090728|ref|NP_616803.1| - 1.8e-19 69.8 0.0 1.4e-17 63.8 0.0 2.6 2 1 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|20090728|ref|NP_616803.1| - 1.1e-17 64.7 0.0 1.8e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|20090728|ref|NP_616803.1| - 5.8e-11 42.9 0.1 3e-10 40.6 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20090728|ref|NP_616803.1| - 0.0012 18.8 0.0 0.003 17.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain OEP PF02321.18 gi|20090728|ref|NP_616803.1| - 0.0024 17.7 0.1 0.0049 16.7 0.1 1.5 1 0 0 1 1 1 1 Outer membrane efflux protein ATP-grasp_2 PF08442.10 gi|20090728|ref|NP_616803.1| - 0.013 15.1 0.8 0.024 14.2 0.1 1.7 2 0 0 2 2 2 0 ATP-grasp domain PAS_4 PF08448.10 gi|20090728|ref|NP_616803.1| - 0.019 15.2 0.0 0.064 13.5 0.0 1.9 2 0 0 2 2 2 0 PAS fold GAF_3 PF13492.6 gi|20090728|ref|NP_616803.1| - 0.022 15.1 0.0 0.063 13.6 0.0 1.8 1 1 0 1 1 1 0 GAF domain HWE_HK PF07536.14 gi|20090728|ref|NP_616803.1| - 0.03 15.0 2.0 0.071 13.8 0.3 2.4 2 1 0 2 2 2 0 HWE histidine kinase GAF PF01590.26 gi|20090728|ref|NP_616803.1| - 0.032 14.9 0.0 0.057 14.0 0.0 1.5 1 0 0 1 1 1 0 GAF domain HATPase_c_3 PF13589.6 gi|20090728|ref|NP_616803.1| - 0.052 13.4 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|20090728|ref|NP_616803.1| - 0.18 11.5 0.1 0.18 11.5 0.1 2.3 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HIP1_clath_bdg PF16515.5 gi|20090728|ref|NP_616803.1| - 0.74 10.5 11.4 0.11 13.1 6.3 2.1 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 HemX PF04375.14 gi|20090728|ref|NP_616803.1| - 1.1 8.4 6.6 1.4 8.1 2.1 2.1 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Terminase_5 PF06056.12 gi|20090729|ref|NP_616804.1| - 1.7e-05 24.6 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|20090729|ref|NP_616804.1| - 0.00027 20.6 0.0 0.00055 19.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|20090729|ref|NP_616804.1| - 0.0013 18.9 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20090729|ref|NP_616804.1| - 0.0043 16.8 0.0 0.015 15.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20090729|ref|NP_616804.1| - 0.0064 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20090729|ref|NP_616804.1| - 0.0069 16.0 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20090729|ref|NP_616804.1| - 0.04 13.9 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix zf-Mss51 PF13824.6 gi|20090729|ref|NP_616804.1| - 0.049 13.7 3.4 0.089 12.9 3.4 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20090729|ref|NP_616804.1| - 0.062 13.4 1.8 1.2 9.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20090729|ref|NP_616804.1| - 0.067 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TnsD PF15978.5 gi|20090729|ref|NP_616804.1| - 0.14 11.1 0.0 0.23 10.4 0.0 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D Rubredoxin PF00301.20 gi|20090729|ref|NP_616804.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin DDE_Tnp_IS1 PF03400.13 gi|20090730|ref|NP_616805.1| - 2.9e-13 50.3 0.2 3.2e-13 50.1 0.2 1.0 1 0 0 1 1 1 1 IS1 transposase rve PF00665.26 gi|20090732|ref|NP_616807.1| - 7.2e-25 87.5 0.0 1.3e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20090732|ref|NP_616807.1| - 1.7e-05 24.8 0.2 3.9e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.6 gi|20090732|ref|NP_616807.1| - 5e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090732|ref|NP_616807.1| - 0.00013 21.7 0.6 0.00059 19.5 0.0 2.4 2 1 1 3 3 3 1 Homeodomain-like domain HTH_38 PF13936.6 gi|20090732|ref|NP_616807.1| - 0.00018 21.2 0.2 0.0004 20.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090732|ref|NP_616807.1| - 0.00096 19.1 0.0 0.013 15.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_3 PF01381.22 gi|20090732|ref|NP_616807.1| - 0.011 15.7 0.3 0.04 14.0 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix HTH_Tnp_Tc3_1 PF11427.8 gi|20090732|ref|NP_616807.1| - 0.015 15.1 0.4 0.053 13.4 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.12 gi|20090732|ref|NP_616807.1| - 0.021 14.7 0.1 0.064 13.2 0.0 1.8 2 0 0 2 2 1 0 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4 PF04545.16 gi|20090732|ref|NP_616807.1| - 0.065 12.8 0.1 0.16 11.5 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20090732|ref|NP_616807.1| - 0.11 12.2 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20090732|ref|NP_616807.1| - 0.11 12.4 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_28 PF13518.6 gi|20090732|ref|NP_616807.1| - 0.17 12.1 0.0 0.5 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20090732|ref|NP_616807.1| - 0.2 11.2 0.0 0.43 10.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding IstB_IS21 PF01695.17 gi|20090733|ref|NP_616808.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20090733|ref|NP_616808.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20090733|ref|NP_616808.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20090733|ref|NP_616808.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20090733|ref|NP_616808.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20090733|ref|NP_616808.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20090733|ref|NP_616808.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20090733|ref|NP_616808.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20090733|ref|NP_616808.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20090733|ref|NP_616808.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20090733|ref|NP_616808.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20090733|ref|NP_616808.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20090733|ref|NP_616808.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20090733|ref|NP_616808.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090733|ref|NP_616808.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20090733|ref|NP_616808.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20090733|ref|NP_616808.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20090733|ref|NP_616808.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20090733|ref|NP_616808.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family Molybdopterin PF00384.22 gi|20090734|ref|NP_616809.1| - 0.049 12.6 0.5 0.068 12.1 0.5 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase A2L_zn_ribbon PF08792.10 gi|20090735|ref|NP_616810.1| - 0.2 11.4 0.2 0.2 11.4 0.2 2.8 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.6 gi|20090735|ref|NP_616810.1| - 0.21 12.1 2.9 5.7 7.5 0.0 2.8 3 0 0 3 3 3 0 Zinc-finger double domain DUF202 PF02656.15 gi|20090735|ref|NP_616810.1| - 0.65 10.5 4.0 5.7 7.5 4.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) zf-C2H2_6 PF13912.6 gi|20090735|ref|NP_616810.1| - 1.4 9.0 8.7 3.3 7.8 1.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|20090735|ref|NP_616810.1| - 1.6 9.3 5.1 28 5.4 0.1 2.8 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_1 PF00130.22 gi|20090735|ref|NP_616810.1| - 5.1 7.1 6.9 1.2e+02 2.7 6.9 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RelA_SpoT PF04607.17 gi|20090737|ref|NP_616812.1| - 0.00011 22.4 1.2 0.00024 21.3 0.2 2.1 2 0 0 2 2 2 1 Region found in RelA / SpoT proteins Arena_ncap_C PF17290.2 gi|20090737|ref|NP_616812.1| - 0.049 13.0 0.6 0.073 12.4 0.6 1.3 1 0 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain Replic_Relax PF13814.6 gi|20090738|ref|NP_616813.1| - 0.0017 18.5 0.1 0.0026 17.9 0.1 1.3 1 0 0 1 1 1 1 Replication-relaxation DUF3692 PF12469.8 gi|20090739|ref|NP_616814.1| - 0.013 15.7 0.0 0.39 10.9 0.0 2.2 2 0 0 2 2 2 0 CRISPR-associated protein DUF1565 PF07602.11 gi|20090739|ref|NP_616814.1| - 0.073 12.4 0.2 0.23 10.8 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1565) rve PF00665.26 gi|20090740|ref|NP_616815.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090740|ref|NP_616815.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20090740|ref|NP_616815.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20090740|ref|NP_616815.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20090740|ref|NP_616815.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090740|ref|NP_616815.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20090740|ref|NP_616815.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal AAA_22 PF13401.6 gi|20090741|ref|NP_616816.1| - 0.011 16.0 0.0 0.75 10.1 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090741|ref|NP_616816.1| - 0.027 14.2 0.1 0.069 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|20090741|ref|NP_616816.1| - 0.079 13.5 0.0 0.29 11.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_14 PF13173.6 gi|20090741|ref|NP_616816.1| - 0.1 12.7 0.2 0.1 12.7 0.2 3.1 2 1 1 3 3 3 0 AAA domain Pentapeptide PF00805.22 gi|20090742|ref|NP_616817.1| - 7.6e-86 281.1 50.1 1.5e-15 56.4 0.5 8.2 2 2 4 8 8 8 8 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|20090742|ref|NP_616817.1| - 9.4e-40 134.7 0.0 3.4e-11 43.1 0.0 4.6 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|20090742|ref|NP_616817.1| - 3e-30 104.1 0.0 1.6e-05 25.0 0.0 6.9 1 1 6 7 7 7 7 Pentapeptide repeats (9 copies) DNA_ligase_OB PF03120.16 gi|20090742|ref|NP_616817.1| - 0.00027 20.8 0.1 38 4.3 0.0 5.8 1 1 3 4 4 4 1 NAD-dependent DNA ligase OB-fold domain Adenine_glyco PF03352.13 gi|20090743|ref|NP_616818.1| - 0.039 13.7 0.1 0.062 13.1 0.1 1.3 1 0 0 1 1 1 0 Methyladenine glycosylase Chi-conotoxin PF16981.5 gi|20090744|ref|NP_616819.1| - 0.016 15.4 0.4 0.03 14.5 0.3 1.5 1 1 0 1 1 1 0 chi-Conotoxin or t superfamily Tetraspanin PF00335.20 gi|20090744|ref|NP_616819.1| - 0.022 14.5 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family Mannosyl_trans PF05007.13 gi|20090744|ref|NP_616819.1| - 0.034 14.0 0.6 0.1 12.5 0.1 1.8 1 1 1 2 2 2 0 Mannosyltransferase (PIG-M) Mem_trans PF03547.18 gi|20090744|ref|NP_616819.1| - 0.082 11.3 0.1 0.088 11.2 0.1 1.1 1 0 0 1 1 1 0 Membrane transport protein YjcZ_2 PF09680.10 gi|20090744|ref|NP_616819.1| - 0.41 10.3 6.1 0.67 9.6 6.1 1.3 1 0 0 1 1 1 0 Family of unknown function DUF927 PF06048.11 gi|20090745|ref|NP_616820.1| - 2.3e-71 240.7 0.0 3.5e-71 240.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF927) MULE PF10551.9 gi|20090746|ref|NP_616821.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20090746|ref|NP_616821.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20090746|ref|NP_616821.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20090746|ref|NP_616821.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20090746|ref|NP_616821.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20090746|ref|NP_616821.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20090746|ref|NP_616821.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20090746|ref|NP_616821.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20090746|ref|NP_616821.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20090746|ref|NP_616821.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20090746|ref|NP_616821.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger HTH_29 PF13551.6 gi|20090749|ref|NP_616824.1| - 0.029 14.4 0.2 0.053 13.6 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TipAS PF07739.13 gi|20090749|ref|NP_616824.1| - 0.058 13.9 0.4 0.41 11.2 0.1 2.0 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain DUF2239 PF09998.9 gi|20090749|ref|NP_616824.1| - 0.082 12.7 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2239) MULE PF10551.9 gi|20090750|ref|NP_616825.1| - 5.9e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20090750|ref|NP_616825.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20090750|ref|NP_616825.1| - 0.021 14.8 0.1 0.063 13.3 0.1 1.9 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20090750|ref|NP_616825.1| - 0.026 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20090750|ref|NP_616825.1| - 0.04 13.8 1.1 0.093 12.6 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20090750|ref|NP_616825.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20090750|ref|NP_616825.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20090750|ref|NP_616825.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20090750|ref|NP_616825.1| - 0.17 12.0 3.4 0.39 10.8 3.4 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20090750|ref|NP_616825.1| - 0.25 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20090750|ref|NP_616825.1| - 6.9 6.7 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger ADH_zinc_N PF00107.26 gi|20090751|ref|NP_616826.1| - 4.4e-18 65.5 0.8 6.9e-18 64.9 0.8 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|20090751|ref|NP_616826.1| - 3.4e-13 49.4 0.0 1e-12 47.9 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|20090751|ref|NP_616826.1| - 2.3e-08 35.2 0.0 5e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FMN_red PF03358.15 gi|20090752|ref|NP_616827.1| - 1.5e-25 89.8 0.0 2e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20090752|ref|NP_616827.1| - 6.4e-13 48.8 0.0 1.1e-12 48.1 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold PKD PF00801.20 gi|20090753|ref|NP_616828.1| - 8.8e-144 467.6 103.4 1.4e-13 50.5 1.5 13.0 12 0 0 12 12 12 12 PKD domain Lactonase PF10282.9 gi|20090753|ref|NP_616828.1| - 3.7e-35 121.8 15.9 5.5e-08 32.4 0.0 7.7 3 2 5 8 8 8 5 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|20090753|ref|NP_616828.1| - 3.4e-26 91.7 16.6 2.9e-06 26.0 0.8 6.2 2 2 3 6 6 6 6 Cytochrome D1 heme domain PKD_3 PF16820.5 gi|20090753|ref|NP_616828.1| - 1.2e-22 79.4 41.7 0.13 12.1 0.0 12.7 13 0 0 13 13 13 9 PKD-like domain SGL PF08450.12 gi|20090753|ref|NP_616828.1| - 2.2e-18 66.7 28.3 1.2e-06 28.4 0.8 7.7 3 2 5 8 8 8 7 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|20090753|ref|NP_616828.1| - 1.3e-16 59.7 35.8 0.057 13.5 0.0 12.6 12 0 0 12 12 12 5 NHL repeat Arylesterase PF01731.20 gi|20090753|ref|NP_616828.1| - 9e-12 45.0 23.8 0.0087 16.2 0.0 11.7 3 2 10 13 13 13 2 Arylesterase PD40 PF07676.12 gi|20090753|ref|NP_616828.1| - 4.4e-09 36.0 0.0 3.1 7.9 0.0 7.8 7 0 0 7 7 7 1 WD40-like Beta Propeller Repeat ChitinaseA_N PF08329.10 gi|20090753|ref|NP_616828.1| - 2.8e-08 33.5 9.8 12 5.6 0.0 11.1 13 0 0 13 13 13 0 Chitinase A, N-terminal domain MG2 PF01835.19 gi|20090753|ref|NP_616828.1| - 6e-07 29.8 33.6 10 6.6 0.1 12.0 9 3 3 12 12 12 0 MG2 domain SBP56 PF05694.11 gi|20090753|ref|NP_616828.1| - 2.8e-06 26.4 0.2 0.96 8.2 0.0 5.8 3 2 4 7 7 7 1 56kDa selenium binding protein (SBP56) ThaI PF15514.6 gi|20090753|ref|NP_616828.1| - 1.3e-05 24.9 2.4 1.5 8.4 0.1 4.8 3 1 2 5 5 5 2 Restriction endonuclease ThaI HA1 PF18239.1 gi|20090753|ref|NP_616828.1| - 8.2e-05 22.4 2.8 10 6.1 0.0 7.0 8 0 0 8 8 8 0 Hemagglutinin I DUF1513 PF07433.11 gi|20090753|ref|NP_616828.1| - 9.3e-05 21.7 8.5 0.11 11.5 0.0 5.4 3 2 3 6 6 6 1 Protein of unknown function (DUF1513) Str_synth PF03088.16 gi|20090753|ref|NP_616828.1| - 0.00013 22.0 0.5 74 3.6 0.0 7.5 6 2 3 9 9 9 0 Strictosidine synthase Arm-DNA-bind_3 PF13356.6 gi|20090753|ref|NP_616828.1| - 0.0093 16.3 0.1 24 5.4 0.0 6.0 4 3 0 4 4 3 0 Arm DNA-binding domain PQQ PF01011.21 gi|20090753|ref|NP_616828.1| - 0.017 15.0 15.9 1.8 8.7 0.2 7.7 8 0 0 8 8 8 0 PQQ enzyme repeat Phytase-like PF13449.6 gi|20090753|ref|NP_616828.1| - 0.025 14.5 0.1 49 3.7 0.0 5.2 3 2 1 5 5 5 0 Esterase-like activity of phytase P_proprotein PF01483.20 gi|20090753|ref|NP_616828.1| - 0.036 14.1 0.8 1.4e+02 2.5 0.0 6.6 7 1 1 8 8 7 0 Proprotein convertase P-domain PHBC_N PF12551.8 gi|20090753|ref|NP_616828.1| - 0.23 11.3 0.7 32 4.4 0.0 3.6 3 0 0 3 3 3 0 Poly-beta-hydroxybutyrate polymerase N terminal DUF2381 PF09544.10 gi|20090753|ref|NP_616828.1| - 0.42 10.1 1.3 28 4.1 0.0 4.3 4 1 1 5 5 5 0 Protein of unknown function (DUF2381) CstA PF02554.14 gi|20090754|ref|NP_616829.1| - 1.3e-48 165.8 20.8 1e-32 113.5 3.5 2.8 1 1 2 3 3 3 2 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|20090754|ref|NP_616829.1| - 4.4e-21 75.4 3.2 4.4e-21 75.4 3.2 2.8 2 1 0 2 2 2 1 5TM C-terminal transporter carbon starvation CstA DUF1699 PF08004.11 gi|20090755|ref|NP_616830.1| - 1.1e-60 203.0 2.0 1.3e-60 202.8 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.14 gi|20090755|ref|NP_616830.1| - 0.00038 20.7 0.0 0.00055 20.2 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) TPR_2 PF07719.17 gi|20090756|ref|NP_616831.1| - 2.8e-07 30.2 0.0 6.3e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090756|ref|NP_616831.1| - 3.8e-06 26.5 0.0 7.6e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090756|ref|NP_616831.1| - 0.00011 21.7 0.0 0.00023 20.8 0.0 1.5 1 0 0 1 1 1 1 TPR repeat TPR_12 PF13424.6 gi|20090756|ref|NP_616831.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090756|ref|NP_616831.1| - 0.016 16.0 0.0 0.042 14.7 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090756|ref|NP_616831.1| - 0.017 15.3 0.0 0.046 13.9 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090756|ref|NP_616831.1| - 0.02 15.5 0.0 0.035 14.8 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat dTDP_sugar_isom PF00908.17 gi|20090758|ref|NP_616833.1| - 4.9e-18 65.4 0.0 5.7e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|20090758|ref|NP_616833.1| - 3.9e-10 39.6 0.0 5.8e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|20090758|ref|NP_616833.1| - 0.00054 19.6 0.1 1.2 9.0 0.0 2.2 2 0 0 2 2 2 2 Cupin domain ABC_tran PF00005.27 gi|20090759|ref|NP_616834.1| - 1.3e-23 84.0 0.0 1.9e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|20090759|ref|NP_616834.1| - 0.00032 21.0 0.2 0.0012 19.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|20090759|ref|NP_616834.1| - 0.0017 18.3 0.5 0.0076 16.2 0.1 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 gi|20090759|ref|NP_616834.1| - 0.0023 18.5 0.0 0.008 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|20090759|ref|NP_616834.1| - 0.0035 16.8 0.7 0.12 11.7 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20090759|ref|NP_616834.1| - 0.0065 16.2 0.2 0.0065 16.2 0.2 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|20090759|ref|NP_616834.1| - 0.012 15.4 0.7 0.033 13.9 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|20090759|ref|NP_616834.1| - 0.013 14.5 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|20090759|ref|NP_616834.1| - 0.024 15.0 0.1 0.032 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_21 PF13304.6 gi|20090759|ref|NP_616834.1| - 0.028 14.3 0.0 0.051 13.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 gi|20090759|ref|NP_616834.1| - 0.034 13.6 0.1 6.3 6.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein KAP_NTPase PF07693.14 gi|20090759|ref|NP_616834.1| - 0.063 12.5 0.0 0.083 12.1 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain CLP1_P PF16575.5 gi|20090759|ref|NP_616834.1| - 0.069 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|20090759|ref|NP_616834.1| - 0.084 12.6 0.0 0.35 10.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|20090759|ref|NP_616834.1| - 0.088 11.6 1.0 1.3 7.8 0.1 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ATP-synt_ab PF00006.25 gi|20090759|ref|NP_616834.1| - 0.11 12.2 0.1 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|20090759|ref|NP_616834.1| - 0.17 12.3 0.4 0.65 10.4 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|20090759|ref|NP_616834.1| - 0.17 11.6 0.4 1 9.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|20090760|ref|NP_616835.1| - 3e-21 76.4 0.0 4.3e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20090760|ref|NP_616835.1| - 2.4e-09 37.6 0.0 4.5e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|20090760|ref|NP_616835.1| - 1.3e-05 25.5 0.0 2.8e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|20090760|ref|NP_616835.1| - 0.0023 17.4 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|20090760|ref|NP_616835.1| - 0.0026 17.3 0.4 0.028 13.8 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20090760|ref|NP_616835.1| - 0.0074 16.1 0.0 2.9 7.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20090760|ref|NP_616835.1| - 0.0086 16.5 0.1 0.016 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|20090760|ref|NP_616835.1| - 0.016 14.5 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 gi|20090760|ref|NP_616835.1| - 0.018 14.7 0.1 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|20090760|ref|NP_616835.1| - 0.051 12.7 0.1 0.18 11.0 0.1 1.9 1 1 0 1 1 1 0 NB-ARC domain PI-PLC-C1 PF16670.5 gi|20090760|ref|NP_616835.1| - 0.095 11.8 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide phospholipase C, Ca2+-dependent MMR_HSR1 PF01926.23 gi|20090760|ref|NP_616835.1| - 0.11 12.6 0.0 2.7 8.1 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|20090760|ref|NP_616835.1| - 0.11 12.5 0.2 0.39 10.8 0.1 1.8 2 1 0 2 2 2 0 Helicase HerA, central domain PRK PF00485.18 gi|20090760|ref|NP_616835.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 gi|20090760|ref|NP_616835.1| - 0.12 12.3 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase BPD_transp_1 PF00528.22 gi|20090761|ref|NP_616836.1| - 8e-22 77.9 8.9 8e-22 77.9 8.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PrgI PF12666.7 gi|20090761|ref|NP_616836.1| - 0.79 10.5 0.1 0.79 10.5 0.1 2.9 3 2 0 3 3 3 0 PrgI family protein BPD_transp_1 PF00528.22 gi|20090762|ref|NP_616837.1| - 4.4e-38 130.9 10.8 4.4e-38 130.9 10.8 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|20090763|ref|NP_616838.1| - 3.1e-69 233.7 6.6 4.2e-69 233.3 6.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Acetyltransf_9 PF13527.7 gi|20090763|ref|NP_616838.1| - 0.071 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SBP_bac_5 PF00496.22 gi|20090764|ref|NP_616839.1| - 7.2e-78 262.2 4.6 9.4e-78 261.8 4.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_5 PF00496.22 gi|20090765|ref|NP_616840.1| - 7e-74 249.0 3.5 9.5e-74 248.6 3.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Neurexophilin PF06312.12 gi|20090766|ref|NP_616841.1| - 0.015 14.8 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 Neurexophilin HAD_2 PF13419.6 gi|20090767|ref|NP_616842.1| - 2.6e-16 60.2 0.0 3.5e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20090767|ref|NP_616842.1| - 1.6e-09 37.7 0.0 2.7e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|20090767|ref|NP_616842.1| - 8.7e-05 22.9 0.0 0.00011 22.5 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|20090767|ref|NP_616842.1| - 0.00044 19.9 0.0 0.00071 19.2 0.0 1.3 1 1 0 1 1 1 1 Mitochondrial PGP phosphatase NB-LRR PF12061.8 gi|20090767|ref|NP_616842.1| - 0.062 12.6 0.0 0.092 12.1 0.0 1.2 1 0 0 1 1 1 0 Late blight resistance protein R1 Adenylsucc_synt PF00709.21 gi|20090768|ref|NP_616843.1| - 2.6e-152 507.6 0.0 2.9e-152 507.4 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase zf-DBF PF07535.12 gi|20090768|ref|NP_616843.1| - 0.14 12.2 0.6 0.35 11.0 0.6 1.6 1 0 0 1 1 1 0 DBF zinc finger Methyltransf_11 PF08241.12 gi|20090769|ref|NP_616844.1| - 1e-19 71.0 0.0 1.6e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090769|ref|NP_616844.1| - 1.4e-17 64.2 0.0 2.2e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090769|ref|NP_616844.1| - 1.7e-17 63.6 0.1 2.2e-17 63.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090769|ref|NP_616844.1| - 1.1e-11 44.8 0.0 1.4e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090769|ref|NP_616844.1| - 1.1e-10 42.1 0.0 1.8e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090769|ref|NP_616844.1| - 2.6e-08 33.5 0.0 3.7e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|20090769|ref|NP_616844.1| - 2.5e-06 27.2 0.0 3.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Pox_MCEL PF03291.16 gi|20090769|ref|NP_616844.1| - 0.0016 17.6 0.1 0.0024 17.0 0.1 1.2 1 0 0 1 1 1 1 mRNA capping enzyme Thymidylate_kin PF02223.17 gi|20090769|ref|NP_616844.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase YnfE PF17452.2 gi|20090769|ref|NP_616844.1| - 0.027 14.7 0.8 9.5 6.6 0.0 2.5 2 1 0 2 2 2 0 Uncharacterized YnfE-like PRiA4_ORF3 PF07929.11 gi|20090770|ref|NP_616845.1| - 1.2e-62 210.7 0.3 1.3e-62 210.5 0.3 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein SEC-C PF02810.15 gi|20090771|ref|NP_616846.1| - 1.4e-10 40.9 11.7 2.5e-10 40.1 11.7 1.5 1 0 0 1 1 1 1 SEC-C motif DUF3874 PF12990.7 gi|20090771|ref|NP_616846.1| - 0.0054 17.0 0.1 0.11 12.8 0.0 2.5 2 0 0 2 2 2 1 Domain of unknonw function from B. Theta Gene description (DUF3874) PARP_reg PF02877.14 gi|20090771|ref|NP_616846.1| - 0.13 12.3 1.1 0.31 11.1 0.0 2.2 2 2 0 2 2 2 0 Poly(ADP-ribose) polymerase, regulatory domain PRiA4_ORF3 PF07929.11 gi|20090774|ref|NP_616849.1| - 1.7e-65 220.0 0.6 1.9e-65 219.8 0.6 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DUF2227 PF09988.9 gi|20090775|ref|NP_616850.1| - 6.1e-29 101.1 5.2 3e-27 95.6 5.2 2.0 1 1 0 1 1 1 1 Uncharacterized metal-binding protein (DUF2227) YdjM PF04307.14 gi|20090775|ref|NP_616850.1| - 0.00052 19.4 2.7 0.0019 17.5 2.7 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3792 PF12670.7 gi|20090775|ref|NP_616850.1| - 1.2 9.3 5.7 3.1 8.0 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) Cas6b_C PF17262.2 gi|20090777|ref|NP_616852.1| - 8.7e-40 135.4 1.5 9.1e-40 135.3 0.1 1.7 2 0 0 2 2 2 1 Cas6b C-terminal domain Cas6b_N PF17955.1 gi|20090777|ref|NP_616852.1| - 1.1e-34 118.6 0.6 1.8e-34 117.9 0.6 1.4 1 0 0 1 1 1 1 Cas6b N-terminal domain HD PF01966.22 gi|20090778|ref|NP_616853.1| - 4.1e-06 27.0 0.2 6.7e-06 26.3 0.2 1.4 1 0 0 1 1 1 1 HD domain rve PF00665.26 gi|20090779|ref|NP_616854.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090779|ref|NP_616854.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20090779|ref|NP_616854.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20090779|ref|NP_616854.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20090779|ref|NP_616854.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090779|ref|NP_616854.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20090779|ref|NP_616854.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal Csm1_B PF18211.1 gi|20090780|ref|NP_616855.1| - 5.5e-33 112.7 0.0 9.1e-32 108.8 0.0 2.5 2 0 0 2 2 2 1 Csm1 subunit domain B mCpol PF18182.1 gi|20090780|ref|NP_616855.1| - 0.0029 17.9 0.0 0.044 14.1 0.0 2.5 2 1 1 3 3 3 1 minimal CRISPR polymerase domain Csm2_III-A PF03750.13 gi|20090781|ref|NP_616856.1| - 3.9e-11 43.8 0.1 5.7e-11 43.3 0.1 1.3 1 0 0 1 1 1 1 Csm2 Type III-A Methyltr_RsmB-F PF01189.17 gi|20090781|ref|NP_616856.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF3738 PF12543.8 gi|20090781|ref|NP_616856.1| - 0.11 12.6 0.1 0.23 11.6 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3738) RAMPs PF03787.15 gi|20090782|ref|NP_616857.1| - 2.9e-16 60.1 0.1 4.1e-16 59.7 0.1 1.2 1 0 0 1 1 1 1 RAMP superfamily Csm4_C PF17953.1 gi|20090783|ref|NP_616858.1| - 1.4e-11 44.1 0.0 2.8e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 CRISPR Csm4 C-terminal domain RAMPs PF03787.15 gi|20090783|ref|NP_616858.1| - 1.4e-06 28.6 2.5 2.7e-06 27.6 2.5 1.5 1 0 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|20090784|ref|NP_616859.1| - 8.2e-27 94.6 0.5 8.2e-27 94.6 0.5 1.4 2 0 0 2 2 2 1 RAMP superfamily DUF1660 PF07874.11 gi|20090784|ref|NP_616859.1| - 1.1 9.8 3.9 4.4 7.9 2.0 2.4 2 0 0 2 2 2 0 Prophage protein (DUF1660) TPR_12 PF13424.6 gi|20090785|ref|NP_616860.1| - 3.6e-12 46.4 6.8 1.3e-10 41.4 2.8 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090785|ref|NP_616860.1| - 1.9e-11 43.4 2.9 0.0001 22.0 0.2 3.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090785|ref|NP_616860.1| - 1.7e-08 34.0 5.4 0.0027 17.5 0.1 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090785|ref|NP_616860.1| - 1.9e-07 30.7 11.7 0.0018 18.4 0.4 4.9 5 0 0 5 5 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090785|ref|NP_616860.1| - 2.9e-06 26.9 12.7 0.0046 17.0 0.3 4.5 5 0 0 5 5 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090785|ref|NP_616860.1| - 9.3e-05 22.9 0.1 3.6 8.6 0.0 4.2 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090785|ref|NP_616860.1| - 0.00012 22.2 1.7 0.23 11.9 0.2 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090785|ref|NP_616860.1| - 0.00022 21.1 8.0 0.24 11.5 0.6 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|20090785|ref|NP_616860.1| - 0.00033 20.5 0.7 0.012 15.3 0.1 3.1 2 1 1 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_6 PF13174.6 gi|20090785|ref|NP_616860.1| - 0.00036 21.0 5.8 11 7.0 0.0 5.6 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090785|ref|NP_616860.1| - 0.00085 19.0 14.1 0.33 10.7 0.0 4.7 2 1 3 5 5 5 2 TPR repeat TPR_16 PF13432.6 gi|20090785|ref|NP_616860.1| - 0.0045 17.6 0.5 2.9 8.6 0.1 3.8 3 1 1 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20090785|ref|NP_616860.1| - 0.023 14.8 0.2 0.023 14.8 0.2 4.0 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_19 PF14559.6 gi|20090785|ref|NP_616860.1| - 0.06 13.9 5.7 2.5 8.7 0.5 4.9 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20090785|ref|NP_616860.1| - 0.28 10.9 5.2 19 4.9 0.1 4.1 4 1 1 5 5 5 0 Tetratricopeptide repeat-like domain BTAD PF03704.17 gi|20090785|ref|NP_616860.1| - 0.41 11.1 1.5 7.3 7.0 0.3 2.7 2 1 1 3 3 2 0 Bacterial transcriptional activator domain Katanin_con80 PF13925.6 gi|20090785|ref|NP_616860.1| - 3.4 7.7 7.7 4.3 7.4 0.4 4.0 4 0 0 4 4 4 0 con80 domain of Katanin CN_hydrolase PF00795.22 gi|20090786|ref|NP_616861.1| - 0.031 13.6 0.0 1.1 8.5 0.0 2.6 2 1 0 2 2 2 0 Carbon-nitrogen hydrolase VAPB_antitox PF02697.14 gi|20090787|ref|NP_616862.1| - 0.0053 17.5 1.2 0.011 16.4 0.8 1.8 1 1 0 1 1 1 1 Putative antitoxin AAA_14 PF13173.6 gi|20090790|ref|NP_616865.1| - 1.9e-27 95.9 0.0 3.5e-27 95.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|20090790|ref|NP_616865.1| - 2.9e-10 40.4 0.1 7.1e-10 39.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|20090790|ref|NP_616865.1| - 0.00083 19.3 0.0 0.0019 18.2 0.0 1.7 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|20090790|ref|NP_616865.1| - 0.0034 17.6 0.1 0.08 13.2 0.0 2.6 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|20090790|ref|NP_616865.1| - 0.0084 16.5 0.0 0.017 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|20090790|ref|NP_616865.1| - 0.011 16.1 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|20090790|ref|NP_616865.1| - 0.019 15.4 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|20090790|ref|NP_616865.1| - 0.044 14.3 0.0 0.15 12.5 0.0 2.0 2 1 0 2 2 2 0 ABC transporter AAA_35 PF14516.6 gi|20090790|ref|NP_616865.1| - 0.052 12.4 0.0 0.12 11.2 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain Rho_GDI PF02115.17 gi|20090790|ref|NP_616865.1| - 0.18 11.5 0.2 0.86 9.3 0.0 2.0 2 0 0 2 2 2 0 RHO protein GDP dissociation inhibitor DUF5592 PF17332.2 gi|20090791|ref|NP_616866.1| - 4.9 7.8 9.7 5.3 7.7 0.0 3.3 3 0 0 3 3 3 0 Family of unknown function (DUF5592) TPR_1 PF00515.28 gi|20090792|ref|NP_616867.1| - 3.8e-49 162.6 16.5 8.4e-08 31.7 0.0 8.2 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090792|ref|NP_616867.1| - 2.3e-41 136.6 19.5 2.9e-06 27.0 0.0 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090792|ref|NP_616867.1| - 6.2e-37 125.0 20.2 9.1e-07 28.5 0.1 8.2 4 3 4 8 8 8 8 TPR repeat TPR_17 PF13431.6 gi|20090792|ref|NP_616867.1| - 9.1e-35 116.6 8.0 0.00038 20.6 0.1 8.3 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090792|ref|NP_616867.1| - 6.9e-33 113.0 7.9 8.8e-10 39.1 0.2 5.6 1 1 4 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090792|ref|NP_616867.1| - 3.5e-32 107.9 11.3 1.5e-05 24.8 0.0 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090792|ref|NP_616867.1| - 1.3e-30 103.4 15.0 2.2e-05 24.9 0.3 8.2 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090792|ref|NP_616867.1| - 1e-25 89.6 4.4 2.1e-06 27.8 0.2 4.9 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20090792|ref|NP_616867.1| - 5.7e-25 87.4 9.3 1.5e-05 25.2 0.6 6.2 2 1 5 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090792|ref|NP_616867.1| - 2.8e-23 82.2 10.2 6.1e-07 29.9 0.5 5.2 4 1 1 5 5 5 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090792|ref|NP_616867.1| - 9.7e-20 70.6 4.3 5e-08 33.1 0.1 3.3 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|20090792|ref|NP_616867.1| - 9.2e-11 41.6 8.6 0.1 12.7 0.0 6.6 5 2 2 7 7 7 3 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|20090792|ref|NP_616867.1| - 2.6e-10 39.6 5.1 2.3 8.5 0.0 6.9 5 2 2 7 7 6 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090792|ref|NP_616867.1| - 3e-09 36.4 3.6 7.8 6.5 0.1 7.4 8 0 0 8 8 7 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090792|ref|NP_616867.1| - 5.6e-09 36.1 4.6 9 7.2 0.1 7.8 7 1 1 8 8 8 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|20090792|ref|NP_616867.1| - 6.7e-09 35.4 5.9 1.2e-05 24.6 0.9 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat BTAD PF03704.17 gi|20090792|ref|NP_616867.1| - 7.1e-09 36.3 3.6 0.01 16.3 1.0 3.9 3 1 0 3 3 3 2 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|20090792|ref|NP_616867.1| - 8.4e-08 32.2 0.0 0.0045 17.0 0.0 2.7 1 1 0 2 2 2 2 Putative TPR-like repeat NARP1 PF12569.8 gi|20090792|ref|NP_616867.1| - 1e-07 31.3 8.3 0.1 11.5 0.0 5.1 1 1 6 7 7 7 3 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|20090792|ref|NP_616867.1| - 4e-05 23.7 2.5 24 5.0 0.1 5.6 2 1 1 4 4 4 0 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|20090792|ref|NP_616867.1| - 0.0055 17.0 2.0 12 6.3 0.1 4.2 2 2 1 4 4 4 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|20090792|ref|NP_616867.1| - 0.0067 16.9 0.1 0.81 10.1 0.0 3.1 1 1 2 3 3 3 1 Alkyl sulfatase dimerisation ChAPs PF09295.10 gi|20090792|ref|NP_616867.1| - 0.0084 15.1 0.4 0.84 8.6 0.1 2.4 1 1 2 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) TPR_4 PF07721.14 gi|20090792|ref|NP_616867.1| - 0.0096 16.5 0.4 43 5.2 0.1 4.9 5 0 0 5 5 4 0 Tetratricopeptide repeat Rapsyn_N PF10579.9 gi|20090792|ref|NP_616867.1| - 0.012 15.7 0.0 33 4.7 0.0 3.5 2 1 1 3 3 3 0 Rapsyn N-terminal myristoylation and linker region PPR PF01535.20 gi|20090792|ref|NP_616867.1| - 0.053 13.8 2.6 27 5.3 0.0 5.0 6 0 0 6 6 4 0 PPR repeat Coatomer_E PF04733.14 gi|20090792|ref|NP_616867.1| - 0.2 11.1 0.1 12 5.2 0.0 2.3 1 1 1 2 2 2 0 Coatomer epsilon subunit MIT PF04212.18 gi|20090792|ref|NP_616867.1| - 3 8.0 6.8 62 3.8 0.0 4.9 6 0 0 6 6 5 0 MIT (microtubule interacting and transport) domain DUF389 PF04087.14 gi|20090793|ref|NP_616868.1| - 8.6e-36 123.1 15.7 8.6e-36 123.1 15.7 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF389) DUF5429 PF17494.2 gi|20090793|ref|NP_616868.1| - 0.18 11.9 0.6 0.38 10.8 0.6 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5429) DUF2919 PF11143.8 gi|20090793|ref|NP_616868.1| - 0.76 10.1 4.9 0.27 11.6 1.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) Methyltransf_25 PF13649.6 gi|20090794|ref|NP_616869.1| - 4e-17 62.7 0.0 6.6e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090794|ref|NP_616869.1| - 1.1e-14 54.5 0.0 1.5e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090794|ref|NP_616869.1| - 1.9e-14 54.0 0.0 3.3e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090794|ref|NP_616869.1| - 2.8e-12 46.8 0.0 6.3e-12 45.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090794|ref|NP_616869.1| - 2.2e-08 34.8 0.0 3.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090794|ref|NP_616869.1| - 5.2e-08 32.6 0.0 1.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|20090794|ref|NP_616869.1| - 5.7e-08 32.4 0.0 7.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|20090794|ref|NP_616869.1| - 2.4e-07 30.3 0.0 3.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|20090794|ref|NP_616869.1| - 3.7e-06 26.7 0.0 5.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 gi|20090794|ref|NP_616869.1| - 0.00014 21.2 0.0 0.0002 20.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|20090794|ref|NP_616869.1| - 0.00055 19.9 0.0 0.00076 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20090794|ref|NP_616869.1| - 0.0022 17.4 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.11 gi|20090794|ref|NP_616869.1| - 0.0025 17.5 0.0 0.0059 16.3 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) FtsJ PF01728.19 gi|20090794|ref|NP_616869.1| - 0.0037 17.4 0.0 0.0071 16.5 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_33 PF10017.9 gi|20090794|ref|NP_616869.1| - 0.0057 15.9 0.0 0.34 10.0 0.0 2.1 2 0 0 2 2 2 1 Histidine-specific methyltransferase, SAM-dependent AdoMet_MTase PF07757.13 gi|20090794|ref|NP_616869.1| - 0.009 16.3 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase MetW PF07021.12 gi|20090794|ref|NP_616869.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|20090794|ref|NP_616869.1| - 0.021 14.4 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_9 PF08003.11 gi|20090794|ref|NP_616869.1| - 0.037 12.9 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|20090794|ref|NP_616869.1| - 0.041 12.9 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|20090794|ref|NP_616869.1| - 0.063 13.0 0.0 0.088 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|20090794|ref|NP_616869.1| - 0.074 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Lactamase_B_2 PF12706.7 gi|20090795|ref|NP_616870.1| - 3.1e-07 30.1 0.2 8.1e-07 28.7 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20090795|ref|NP_616870.1| - 9.5e-07 29.0 0.4 1.9e-06 28.0 0.4 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2284 PF10050.9 gi|20090796|ref|NP_616871.1| - 7.9e-46 155.8 0.2 9.4e-46 155.5 0.2 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Pyridoxal_deC PF00282.19 gi|20090797|ref|NP_616872.1| - 9e-68 228.7 0.0 1.1e-67 228.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|20090797|ref|NP_616872.1| - 1.4e-07 30.8 0.0 2.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_5 PF00266.19 gi|20090798|ref|NP_616873.1| - 1.3e-38 133.0 0.0 3e-38 131.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V RecA_dep_nuc PF16786.5 gi|20090798|ref|NP_616873.1| - 0.18 11.9 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease FGE-sulfatase PF03781.16 gi|20090799|ref|NP_616874.1| - 6.1e-50 170.2 2.5 7.9e-49 166.6 2.5 2.0 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF1566 PF07603.11 gi|20090799|ref|NP_616874.1| - 0.042 14.2 0.4 0.078 13.4 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1566) DUF1724 PF08350.10 gi|20090801|ref|NP_616876.1| - 3.4e-18 65.5 0.0 9.1e-18 64.2 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.19 gi|20090801|ref|NP_616876.1| - 0.0044 16.9 0.4 0.011 15.6 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|20090801|ref|NP_616876.1| - 0.0099 15.8 0.5 0.019 14.9 0.5 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|20090801|ref|NP_616876.1| - 0.011 15.6 0.1 0.02 14.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|20090801|ref|NP_616876.1| - 0.021 14.8 0.3 0.04 13.9 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix AdoMet_Synthase PF01941.19 gi|20090801|ref|NP_616876.1| - 0.16 10.7 0.1 0.24 10.2 0.1 1.2 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) DUF429 PF04250.13 gi|20090802|ref|NP_616877.1| - 3.1e-48 164.3 0.0 3.6e-48 164.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) CTC1_2 PF15491.6 gi|20090802|ref|NP_616877.1| - 0.09 12.1 0.1 0.55 9.5 0.1 2.0 1 1 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 AAA_8 PF12780.7 gi|20090803|ref|NP_616878.1| - 0.075 12.3 0.2 0.11 11.8 0.2 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 tRNA_synthFbeta PF17759.1 gi|20090804|ref|NP_616879.1| - 6.6e-43 146.6 0.1 1e-42 146.0 0.1 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|20090804|ref|NP_616879.1| - 3e-18 65.8 0.3 4.7e-17 62.0 0.1 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|20090804|ref|NP_616879.1| - 2e-14 53.6 0.0 4.3e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|20090804|ref|NP_616879.1| - 1.4e-07 31.3 0.1 8.5e-07 28.7 0.1 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|20090804|ref|NP_616879.1| - 0.00098 19.3 0.1 1.4 9.2 0.0 3.2 2 1 0 2 2 2 2 Phe-tRNA synthetase beta subunit B1 domain HATPase_c PF02518.26 gi|20090805|ref|NP_616880.1| - 1.1e-26 93.5 0.0 1.9e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20090805|ref|NP_616880.1| - 1.9e-20 72.6 0.1 4.1e-20 71.6 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|20090805|ref|NP_616880.1| - 1.2e-17 64.2 0.0 1.7e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|20090805|ref|NP_616880.1| - 6.5e-12 45.6 0.0 1.5e-11 44.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|20090805|ref|NP_616880.1| - 2.4e-11 43.6 0.0 4.3e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 gi|20090805|ref|NP_616880.1| - 4.7e-05 23.2 0.0 0.00013 21.8 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|20090805|ref|NP_616880.1| - 0.0014 18.5 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|20090805|ref|NP_616880.1| - 0.052 13.5 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|20090805|ref|NP_616880.1| - 0.067 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 PAS domain E2R135 PF11570.8 gi|20090805|ref|NP_616880.1| - 0.12 12.7 0.2 0.31 11.4 0.1 1.6 2 0 0 2 2 2 0 Coiled-coil receptor-binding R-domain of colicin E2 TPP_enzyme_N PF02776.18 gi|20090806|ref|NP_616881.1| - 3.9e-51 173.1 0.0 1.5e-50 171.2 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|20090806|ref|NP_616881.1| - 4.2e-42 143.5 0.0 8.5e-42 142.5 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|20090806|ref|NP_616881.1| - 2.5e-37 127.7 0.0 4.6e-37 126.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain RNase_HII PF01351.18 gi|20090807|ref|NP_616882.1| - 6.6e-50 169.7 0.4 7.7e-50 169.5 0.4 1.0 1 0 0 1 1 1 1 Ribonuclease HII YqgF PF14639.6 gi|20090807|ref|NP_616882.1| - 0.088 12.6 0.2 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 NosD PF05048.13 gi|20090809|ref|NP_616884.1| - 2.8e-56 190.5 43.1 1.2e-52 178.6 31.6 1.8 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20090809|ref|NP_616884.1| - 2e-21 76.5 34.3 3.5e-19 69.2 18.9 3.1 2 1 1 3 3 3 2 Right handed beta helix region Pectinesterase PF01095.19 gi|20090809|ref|NP_616884.1| - 0.00062 18.6 0.2 0.0013 17.5 0.2 1.5 1 0 0 1 1 1 1 Pectinesterase Lactamase_B PF00753.27 gi|20090810|ref|NP_616885.1| - 2.8e-13 50.3 0.1 9.5e-13 48.6 0.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20090810|ref|NP_616885.1| - 0.00016 21.3 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20090810|ref|NP_616885.1| - 0.0095 15.8 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GATase_5 PF13507.6 gi|20090811|ref|NP_616886.1| - 2.2e-47 161.4 0.0 2.5e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|20090811|ref|NP_616886.1| - 4.5e-09 36.4 0.0 6.5e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|20090811|ref|NP_616886.1| - 5.9e-09 35.9 0.0 8.5e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|20090811|ref|NP_616886.1| - 2.6e-08 33.7 0.0 4.5e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|20090811|ref|NP_616886.1| - 4.6e-05 23.3 0.0 0.00021 21.2 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|20090811|ref|NP_616886.1| - 0.0014 18.5 0.1 0.0019 18.0 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 PurS PF02700.14 gi|20090812|ref|NP_616887.1| - 1.5e-27 95.6 0.4 1.7e-27 95.4 0.4 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Asn_synthase PF00733.21 gi|20090814|ref|NP_616889.1| - 3.9e-56 191.2 0.2 1.2e-31 110.7 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|20090814|ref|NP_616889.1| - 1.2e-17 64.0 0.0 2.5e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|20090814|ref|NP_616889.1| - 2.1e-10 40.9 0.0 4.5e-10 39.8 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 gi|20090814|ref|NP_616889.1| - 0.0023 17.1 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|20090814|ref|NP_616889.1| - 0.079 12.7 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 PP-loop family CbiA PF01656.23 gi|20090815|ref|NP_616890.1| - 5.4e-23 81.4 0.1 7.3e-23 81.0 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20090815|ref|NP_616890.1| - 6.7e-14 52.2 0.0 1.6e-11 44.5 0.0 3.1 3 0 0 3 3 3 1 AAA domain ArsA_ATPase PF02374.15 gi|20090815|ref|NP_616890.1| - 1.9e-10 40.4 0.1 2e-09 37.1 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|20090815|ref|NP_616890.1| - 2.1e-10 40.5 0.6 4.5e-06 26.3 0.1 2.9 2 1 1 3 3 3 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|20090815|ref|NP_616890.1| - 5.3e-08 32.6 0.5 6.4e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|20090815|ref|NP_616890.1| - 3.6e-07 29.9 0.0 7.8e-05 22.3 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|20090815|ref|NP_616890.1| - 5.2e-05 23.1 0.0 0.00021 21.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|20090815|ref|NP_616890.1| - 0.00032 20.6 1.1 0.011 15.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain CLP1_P PF16575.5 gi|20090815|ref|NP_616890.1| - 0.00043 20.1 0.0 0.011 15.5 0.0 2.4 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|20090815|ref|NP_616890.1| - 0.0013 18.7 0.9 0.002 18.0 0.1 1.7 2 0 0 2 2 1 1 NTPase AAA_18 PF13238.6 gi|20090815|ref|NP_616890.1| - 0.0022 18.5 0.0 0.0042 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|20090815|ref|NP_616890.1| - 0.0039 16.9 0.1 0.0068 16.1 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|20090815|ref|NP_616890.1| - 0.0064 15.5 0.7 0.011 14.7 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|20090815|ref|NP_616890.1| - 0.007 16.8 0.1 0.014 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|20090815|ref|NP_616890.1| - 0.01 15.9 0.2 0.046 13.8 0.0 2.1 2 1 1 3 3 3 0 Helicase HerA, central domain APS_kinase PF01583.20 gi|20090815|ref|NP_616890.1| - 0.011 15.6 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.6 gi|20090815|ref|NP_616890.1| - 0.027 14.7 0.0 0.062 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20090815|ref|NP_616890.1| - 0.03 14.0 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20090815|ref|NP_616890.1| - 0.037 13.9 0.4 0.073 13.0 0.2 1.5 2 0 0 2 2 1 0 NACHT domain MobB PF03205.14 gi|20090815|ref|NP_616890.1| - 0.04 13.8 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|20090815|ref|NP_616890.1| - 0.055 14.0 0.6 0.1 13.1 0.2 1.9 1 1 1 2 2 2 0 ABC transporter IstB_IS21 PF01695.17 gi|20090815|ref|NP_616890.1| - 0.058 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein CTP_synth_N PF06418.14 gi|20090815|ref|NP_616890.1| - 0.076 12.3 0.3 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 CTP synthase N-terminus AAA_5 PF07728.14 gi|20090815|ref|NP_616890.1| - 0.077 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) 3HCDH_N PF02737.18 gi|20090815|ref|NP_616890.1| - 0.11 12.4 0.9 4.6 7.1 0.0 2.3 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MipZ PF09140.11 gi|20090815|ref|NP_616890.1| - 0.12 11.7 0.1 0.33 10.2 0.1 1.7 1 0 0 1 1 1 0 ATPase MipZ ATP_bind_1 PF03029.17 gi|20090815|ref|NP_616890.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|20090815|ref|NP_616890.1| - 0.21 11.1 0.6 22 4.5 0.1 2.5 3 0 0 3 3 2 0 Elongation factor Tu GTP binding domain NB-ARC PF00931.22 gi|20090815|ref|NP_616890.1| - 0.26 10.4 1.8 0.2 10.8 0.2 1.6 2 0 0 2 2 2 0 NB-ARC domain TPR_1 PF00515.28 gi|20090816|ref|NP_616891.1| - 8.1e-34 114.1 3.8 1.3e-09 37.5 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090816|ref|NP_616891.1| - 6.3e-28 94.6 2.7 1.7e-08 34.0 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090816|ref|NP_616891.1| - 5.2e-27 91.7 4.4 5e-08 32.5 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090816|ref|NP_616891.1| - 1.3e-25 88.8 1.7 2.9e-06 26.9 0.0 4.2 1 1 3 4 4 4 4 TPR repeat TPR_17 PF13431.6 gi|20090816|ref|NP_616891.1| - 1.5e-21 75.1 0.3 2.1e-05 24.6 0.0 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090816|ref|NP_616891.1| - 4.8e-19 67.4 0.9 1.9e-06 28.2 0.0 4.2 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090816|ref|NP_616891.1| - 1.7e-17 63.3 0.2 1.5e-10 41.0 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090816|ref|NP_616891.1| - 1.2e-15 57.9 0.1 2.8e-09 37.5 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20090816|ref|NP_616891.1| - 2.2e-12 47.1 2.6 3.8e-06 27.1 0.1 3.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090816|ref|NP_616891.1| - 5.5e-12 44.8 1.0 0.027 14.5 0.0 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090816|ref|NP_616891.1| - 5.2e-10 39.7 1.1 0.00011 22.6 0.0 3.2 1 1 1 3 3 3 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|20090816|ref|NP_616891.1| - 8.1e-10 38.2 0.1 0.00028 20.0 0.0 2.2 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|20090816|ref|NP_616891.1| - 1.7e-09 37.7 0.4 0.41 11.4 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090816|ref|NP_616891.1| - 2.3e-09 37.3 2.5 9.4e-06 25.8 0.1 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|20090816|ref|NP_616891.1| - 1.5e-07 31.0 1.7 0.53 10.2 0.1 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat MIT PF04212.18 gi|20090816|ref|NP_616891.1| - 2.4e-07 30.7 4.4 0.23 11.5 0.0 4.3 4 0 0 4 4 4 2 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.6 gi|20090816|ref|NP_616891.1| - 8.6e-06 25.7 1.9 1.6 8.8 0.0 4.0 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.6 gi|20090816|ref|NP_616891.1| - 0.00036 19.8 0.0 0.092 11.9 0.0 2.6 1 1 0 2 2 2 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|20090816|ref|NP_616891.1| - 0.00064 19.8 0.1 1.7 8.7 0.0 2.9 1 1 1 2 2 2 2 Domain of Unknown Function (DUF3856) PPR PF01535.20 gi|20090816|ref|NP_616891.1| - 0.01 16.1 1.4 18 5.9 0.0 4.3 4 0 0 4 4 4 0 PPR repeat TPR_5 PF12688.7 gi|20090816|ref|NP_616891.1| - 0.03 14.5 0.0 12 6.1 0.0 2.5 2 1 0 2 2 2 0 Tetratrico peptide repeat TPR_21 PF09976.9 gi|20090816|ref|NP_616891.1| - 0.034 13.9 0.1 3.1 7.4 0.0 2.7 1 1 2 3 3 3 0 Tetratricopeptide repeat-like domain AICARFT_IMPCHas PF01808.18 gi|20090816|ref|NP_616891.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 AICARFT/IMPCHase bienzyme APP_E2 PF12925.7 gi|20090816|ref|NP_616891.1| - 0.14 11.9 0.0 0.42 10.3 0.0 1.7 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein HTH_Bact PF18768.1 gi|20090816|ref|NP_616891.1| - 0.15 11.7 1.2 6.5 6.4 0.1 3.8 4 2 1 5 5 4 0 Helix-turn-helix bacterial domain Peptidase_S13 PF02113.15 gi|20090817|ref|NP_616892.1| - 1.9e-70 237.8 0.3 2.5e-70 237.4 0.3 1.1 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Transpeptidase PF00905.22 gi|20090817|ref|NP_616892.1| - 0.034 13.4 0.0 6 6.0 0.0 2.2 2 0 0 2 2 2 0 Penicillin binding protein transpeptidase domain TPR_1 PF00515.28 gi|20090818|ref|NP_616893.1| - 2e-48 160.3 1.6 1.6e-08 34.0 0.0 6.6 7 0 0 7 7 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090818|ref|NP_616893.1| - 1.8e-40 133.8 10.5 2.5e-06 27.2 0.0 6.7 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090818|ref|NP_616893.1| - 7e-36 119.4 1.5 4.9e-05 23.2 0.2 7.3 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090818|ref|NP_616893.1| - 2.7e-31 107.0 7.7 1.3e-06 27.9 0.1 7.2 1 1 6 7 7 7 5 TPR repeat TPR_16 PF13432.6 gi|20090818|ref|NP_616893.1| - 2.2e-30 105.0 16.5 1.2e-09 38.7 0.9 3.6 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090818|ref|NP_616893.1| - 5.5e-30 101.6 0.2 0.00017 21.7 0.0 7.3 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090818|ref|NP_616893.1| - 2.2e-24 84.0 22.2 0.00011 22.7 0.1 7.3 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20090818|ref|NP_616893.1| - 5.6e-24 84.2 14.9 3.9e-08 33.5 0.3 5.3 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20090818|ref|NP_616893.1| - 2.3e-22 78.9 29.8 9.6e-09 35.3 0.5 4.5 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090818|ref|NP_616893.1| - 5.1e-22 78.2 13.8 6.9e-07 29.7 0.0 4.4 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090818|ref|NP_616893.1| - 6e-16 57.2 9.3 0.0019 18.1 0.0 6.3 4 2 2 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090818|ref|NP_616893.1| - 1.1e-13 50.8 6.7 0.12 13.0 0.0 5.8 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090818|ref|NP_616893.1| - 2.5e-10 39.9 19.2 0.14 12.1 0.1 7.1 7 1 1 8 8 7 4 Tetratricopeptide repeat BTAD PF03704.17 gi|20090818|ref|NP_616893.1| - 6.7e-10 39.6 10.3 5.7e-06 26.8 0.5 2.8 2 1 0 2 2 2 2 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|20090818|ref|NP_616893.1| - 8.7e-10 38.7 1.5 3.6e-05 23.9 0.0 3.6 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|20090818|ref|NP_616893.1| - 2.6e-09 36.6 1.4 0.057 12.3 0.0 3.6 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|20090818|ref|NP_616893.1| - 4.4e-08 33.1 3.7 0.78 9.9 0.0 5.8 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.6 gi|20090818|ref|NP_616893.1| - 5.1e-07 29.2 7.6 0.024 13.8 0.1 3.5 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20090818|ref|NP_616893.1| - 2.8e-06 27.2 2.3 0.98 9.1 0.1 4.2 2 1 3 5 5 5 2 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|20090818|ref|NP_616893.1| - 1.2e-05 25.5 16.4 0.12 13.0 0.0 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_20 PF14561.6 gi|20090818|ref|NP_616893.1| - 1.2e-05 25.6 5.9 0.0038 17.5 0.3 4.7 3 2 2 5 5 5 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|20090818|ref|NP_616893.1| - 1.6e-05 24.5 0.2 0.056 12.9 0.0 3.1 1 1 2 3 3 3 2 Coatomer epsilon subunit DUF3856 PF12968.7 gi|20090818|ref|NP_616893.1| - 7.3e-05 22.9 4.5 4.2 7.4 0.0 5.3 2 2 0 3 3 3 1 Domain of Unknown Function (DUF3856) SRP_TPR_like PF17004.5 gi|20090818|ref|NP_616893.1| - 0.0001 22.3 0.6 0.67 10.0 0.1 3.8 1 1 1 2 2 2 2 Putative TPR-like repeat ChAPs PF09295.10 gi|20090818|ref|NP_616893.1| - 0.00089 18.4 0.3 0.0039 16.2 0.1 1.9 2 0 0 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) PPR PF01535.20 gi|20090818|ref|NP_616893.1| - 0.00099 19.2 3.8 4.3 7.8 0.0 5.0 5 0 0 5 5 4 1 PPR repeat PPTA PF01239.22 gi|20090818|ref|NP_616893.1| - 0.0048 16.6 0.1 6.7 6.6 0.0 3.1 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat MIT PF04212.18 gi|20090818|ref|NP_616893.1| - 0.028 14.5 8.9 19 5.4 0.2 5.3 6 0 0 6 6 5 0 MIT (microtubule interacting and transport) domain DUF1853 PF08907.11 gi|20090818|ref|NP_616893.1| - 0.045 13.5 0.1 0.076 12.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1853) RPN7 PF10602.9 gi|20090818|ref|NP_616893.1| - 0.068 12.9 1.4 34 4.1 0.0 3.7 2 1 0 3 3 3 0 26S proteasome subunit RPN7 WbqC PF08889.11 gi|20090818|ref|NP_616893.1| - 0.099 12.5 0.1 0.52 10.2 0.0 2.0 2 0 0 2 2 2 0 WbqC-like protein family SNAP PF14938.6 gi|20090818|ref|NP_616893.1| - 0.41 10.0 2.0 6.9 6.0 0.1 2.9 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP PASTA PF03793.19 gi|20090819|ref|NP_616894.1| - 6.6e-12 45.1 0.4 3.1e-11 43.0 0.1 2.1 1 1 1 2 2 2 1 PASTA domain IFT57 PF10498.9 gi|20090819|ref|NP_616894.1| - 0.011 14.7 2.5 0.013 14.5 2.5 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 MscS_porin PF12795.7 gi|20090819|ref|NP_616894.1| - 0.021 14.4 3.7 0.029 13.9 3.7 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Spc7 PF08317.11 gi|20090819|ref|NP_616894.1| - 0.025 13.5 6.3 0.034 13.0 6.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF3847 PF12958.7 gi|20090819|ref|NP_616894.1| - 0.066 13.3 2.5 0.14 12.2 2.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3847) UPF0147 PF03685.13 gi|20090819|ref|NP_616894.1| - 0.091 12.8 0.2 0.61 10.2 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0147) CEP209_CC5 PF16574.5 gi|20090819|ref|NP_616894.1| - 0.099 12.8 4.7 0.16 12.1 4.7 1.3 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 DUF1759 PF03564.15 gi|20090819|ref|NP_616894.1| - 0.12 12.3 0.5 0.17 11.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1759) DUF1664 PF07889.12 gi|20090819|ref|NP_616894.1| - 0.16 12.0 2.3 0.16 12.0 1.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|20090819|ref|NP_616894.1| - 0.17 12.2 1.0 0.34 11.2 1.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein Fmp27_WPPW PF10359.9 gi|20090819|ref|NP_616894.1| - 0.26 10.1 1.5 0.29 9.9 1.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF724 PF05266.14 gi|20090819|ref|NP_616894.1| - 0.49 10.2 3.1 0.73 9.6 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) BRE1 PF08647.11 gi|20090819|ref|NP_616894.1| - 0.75 9.9 7.2 0.14 12.3 3.6 1.7 2 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase zf-C4H2 PF10146.9 gi|20090819|ref|NP_616894.1| - 1.8 8.8 3.8 2.4 8.4 3.8 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DUF169 PF02596.15 gi|20090820|ref|NP_616895.1| - 1.2e-62 211.5 0.2 1.4e-62 211.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 TctA PF01970.16 gi|20090821|ref|NP_616896.1| - 1.4e-79 267.7 29.5 1.7e-79 267.5 29.5 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ATP_bind_3 PF01171.20 gi|20090822|ref|NP_616897.1| - 4.6e-13 49.3 0.0 7.3e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|20090822|ref|NP_616897.1| - 1.6e-05 25.0 0.0 2.5e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|20090822|ref|NP_616897.1| - 0.0002 20.3 0.0 0.00029 19.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|20090822|ref|NP_616897.1| - 0.00049 19.3 0.0 0.00068 18.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|20090822|ref|NP_616897.1| - 0.00067 19.1 4.3 0.00067 19.1 4.3 3.3 3 0 0 3 3 3 1 Zinc-ribbon Diphthami_syn_2 PF01902.17 gi|20090822|ref|NP_616897.1| - 0.00095 18.7 0.1 0.0014 18.1 0.1 1.3 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|20090822|ref|NP_616897.1| - 0.0044 16.5 0.0 0.022 14.2 0.0 2.3 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|20090822|ref|NP_616897.1| - 0.0082 15.8 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase Ribosomal_S27e PF01667.17 gi|20090822|ref|NP_616897.1| - 0.015 15.0 4.3 0.021 14.5 0.5 2.4 2 0 0 2 2 2 0 Ribosomal protein S27 RecR PF02132.15 gi|20090822|ref|NP_616897.1| - 0.02 14.5 2.1 0.02 14.5 2.1 3.3 3 0 0 3 3 3 0 RecR protein ThiI PF02568.14 gi|20090822|ref|NP_616897.1| - 0.022 14.4 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Bac_export_2 PF01312.19 gi|20090823|ref|NP_616898.1| - 2.1 7.5 13.0 0.27 10.4 0.9 2.4 1 1 0 2 2 2 0 FlhB HrpN YscU SpaS Family DUF523 PF04463.12 gi|20090824|ref|NP_616899.1| - 1e-06 28.8 0.0 1.4e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF523) NTP_transf_3 PF12804.7 gi|20090825|ref|NP_616900.1| - 3.5e-31 108.7 0.0 4.3e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|20090825|ref|NP_616900.1| - 0.00029 20.7 0.0 0.00037 20.3 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|20090825|ref|NP_616900.1| - 0.082 12.8 0.0 0.45 10.4 0.0 1.9 1 1 0 1 1 1 0 Cytidylyltransferase RPN6_C_helix PF18503.1 gi|20090825|ref|NP_616900.1| - 0.18 11.5 0.0 0.55 10.0 0.0 1.9 1 0 0 1 1 1 0 26S proteasome subunit RPN6 C-terminal helix domain MoaE PF02391.17 gi|20090826|ref|NP_616901.1| - 7.5e-26 90.6 0.2 1.5e-25 89.7 0.2 1.5 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|20090826|ref|NP_616901.1| - 2.6e-17 63.0 0.0 5.2e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0128 PF03673.13 gi|20090826|ref|NP_616901.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) DUF463 PF04317.12 gi|20090826|ref|NP_616901.1| - 0.028 13.3 0.1 0.049 12.6 0.1 1.3 1 0 0 1 1 1 0 YcjX-like family, DUF463 GBP PF02263.19 gi|20090826|ref|NP_616901.1| - 0.084 12.1 0.5 0.13 11.5 0.5 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, N-terminal domain AAA_16 PF13191.6 gi|20090826|ref|NP_616901.1| - 0.097 13.0 0.2 2.4 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA ATPase domain RadC PF04002.15 gi|20090827|ref|NP_616902.1| - 7.7e-46 155.0 0.0 1.1e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 gi|20090827|ref|NP_616902.1| - 0.0018 18.1 0.0 0.0037 17.0 0.0 1.6 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain HHH_2 PF12826.7 gi|20090827|ref|NP_616902.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|20090827|ref|NP_616902.1| - 0.02 15.5 0.0 0.04 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain RB_A PF01858.17 gi|20090827|ref|NP_616902.1| - 0.021 14.7 0.1 0.028 14.3 0.1 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein A domain HHH PF00633.23 gi|20090827|ref|NP_616902.1| - 0.037 13.9 0.0 0.089 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif FMN_red PF03358.15 gi|20090828|ref|NP_616903.1| - 2.3e-33 115.1 0.0 2.9e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20090828|ref|NP_616903.1| - 3.7e-11 43.1 0.0 4.2e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|20090828|ref|NP_616903.1| - 0.1 12.9 0.0 0.52 10.5 0.0 2.0 1 1 0 2 2 2 0 Flavodoxin domain DUF1743 PF08489.11 gi|20090829|ref|NP_616904.1| - 4.4e-09 36.4 0.4 2.2e-05 24.5 0.0 4.4 3 1 1 4 4 4 1 Domain of unknown function (DUF1743) TPP_enzyme_C PF02775.21 gi|20090830|ref|NP_616905.1| - 2.7e-09 37.0 0.0 9e-09 35.3 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|20090830|ref|NP_616905.1| - 4.4e-05 23.1 0.0 0.16 11.6 0.0 3.2 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|20090830|ref|NP_616905.1| - 0.00037 20.2 0.0 0.00065 19.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain POR_N PF01855.19 gi|20090830|ref|NP_616905.1| - 0.03 14.1 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Phage_holin_3_5 PF16085.5 gi|20090830|ref|NP_616905.1| - 0.061 13.5 2.4 1.4 9.1 0.3 2.3 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III DXP_synthase_N PF13292.6 gi|20090830|ref|NP_616905.1| - 0.075 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase SLATT_5 PF18160.1 gi|20090831|ref|NP_616906.1| - 0.027 13.8 0.9 0.044 13.1 0.9 1.3 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF945 PF06097.11 gi|20090831|ref|NP_616906.1| - 0.15 11.2 0.3 0.17 11.0 0.3 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DYW_deaminase PF14432.6 gi|20090831|ref|NP_616906.1| - 0.19 11.6 0.4 0.25 11.2 0.4 1.2 1 0 0 1 1 1 0 DYW family of nucleic acid deaminases DMRL_synthase PF00885.19 gi|20090832|ref|NP_616907.1| - 0.027 14.3 0.0 1.9 8.3 0.0 2.8 1 1 2 3 3 3 0 6,7-dimethyl-8-ribityllumazine synthase YidC_periplas PF14849.6 gi|20090832|ref|NP_616907.1| - 0.032 14.1 0.8 0.038 13.9 0.8 1.1 1 0 0 1 1 1 0 YidC periplasmic domain YXWGXW PF12779.7 gi|20090832|ref|NP_616907.1| - 1.1 9.5 12.5 1.8 8.8 1.5 2.4 2 0 0 2 2 2 0 YXWGXW repeat (2 copies) MarR PF01047.22 gi|20090833|ref|NP_616908.1| - 0.00012 21.9 0.1 0.0002 21.2 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|20090833|ref|NP_616908.1| - 0.00033 20.5 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20090833|ref|NP_616908.1| - 0.0006 19.3 0.2 0.0011 18.5 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|20090833|ref|NP_616908.1| - 0.0017 18.3 0.2 0.0028 17.6 0.2 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|20090833|ref|NP_616908.1| - 0.0024 18.3 0.2 0.004 17.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|20090833|ref|NP_616908.1| - 0.057 13.3 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CarboxypepD_reg PF13620.6 gi|20090833|ref|NP_616908.1| - 0.092 13.0 0.2 0.26 11.6 0.1 1.9 1 1 1 2 2 2 0 Carboxypeptidase regulatory-like domain DDE_Tnp_1_6 PF13751.6 gi|20090834|ref|NP_616909.1| - 1.7e-27 96.1 2.7 2.8e-27 95.4 2.1 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20090834|ref|NP_616909.1| - 1.7e-17 63.2 0.1 3.8e-17 62.1 0.1 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|20090834|ref|NP_616909.1| - 2.6e-17 63.2 1.3 1.2e-16 61.0 1.3 2.0 1 1 0 1 1 1 1 Transposase DDE domain Yae1_N PF09811.9 gi|20090836|ref|NP_616911.1| - 0.0067 16.1 6.1 0.28 10.9 2.3 2.3 2 0 0 2 2 2 2 Essential protein Yae1, N terminal CheB_methylest PF01339.17 gi|20090837|ref|NP_616912.1| - 8.5e-55 185.1 0.0 1.6e-54 184.1 0.0 1.5 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 gi|20090837|ref|NP_616912.1| - 1.3e-53 181.5 0.0 2.2e-53 180.6 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.6 gi|20090837|ref|NP_616912.1| - 8.8e-29 100.2 0.4 5.7e-28 97.6 0.2 2.6 2 0 0 2 2 1 1 PAS domain CheR_N PF03705.15 gi|20090837|ref|NP_616912.1| - 5.8e-16 58.0 0.1 1.6e-15 56.6 0.1 1.8 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_4 PF08448.10 gi|20090837|ref|NP_616912.1| - 7.6e-11 42.2 0.0 3.1e-05 24.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|20090837|ref|NP_616912.1| - 5.2e-10 39.5 1.7 0.00034 20.8 0.0 3.8 4 0 0 4 4 3 2 PAS domain PAS PF00989.25 gi|20090837|ref|NP_616912.1| - 1.8e-09 37.6 0.1 2.7e-08 33.8 0.0 3.0 4 0 0 4 4 2 1 PAS fold PAS_8 PF13188.7 gi|20090837|ref|NP_616912.1| - 1.7e-05 24.7 0.0 0.00035 20.5 0.0 2.9 2 0 0 2 2 2 1 PAS domain CENP-F_leu_zip PF10473.9 gi|20090837|ref|NP_616912.1| - 2.1e-05 24.6 19.6 2.1e-05 24.6 19.6 2.5 2 1 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PAS_7 PF12860.7 gi|20090837|ref|NP_616912.1| - 2.1e-05 24.6 0.3 0.075 13.2 0.0 3.2 2 0 0 2 2 2 1 PAS fold IFT57 PF10498.9 gi|20090837|ref|NP_616912.1| - 0.0006 18.9 12.4 0.0006 18.9 12.4 2.2 2 0 0 2 2 1 1 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|20090837|ref|NP_616912.1| - 0.00066 18.7 14.8 0.00066 18.7 14.8 2.1 2 0 0 2 2 2 1 Spc7 kinetochore protein Fez1 PF06818.15 gi|20090837|ref|NP_616912.1| - 0.0029 18.1 6.0 0.0029 18.1 6.0 2.6 3 0 0 3 3 2 1 Fez1 Golgin_A5 PF09787.9 gi|20090837|ref|NP_616912.1| - 0.004 16.7 12.7 0.004 16.7 12.7 2.1 2 0 0 2 2 2 1 Golgin subfamily A member 5 Exonuc_VII_L PF02601.15 gi|20090837|ref|NP_616912.1| - 0.0069 16.0 2.9 0.0069 16.0 2.9 2.1 3 0 0 3 3 1 1 Exonuclease VII, large subunit PAS_3 PF08447.12 gi|20090837|ref|NP_616912.1| - 0.0072 16.6 0.0 0.045 14.0 0.0 2.3 2 0 0 2 2 1 1 PAS fold ATG16 PF08614.11 gi|20090837|ref|NP_616912.1| - 0.0085 16.3 15.9 0.0085 16.3 15.9 2.2 3 0 0 3 3 1 1 Autophagy protein 16 (ATG16) DASH_Duo1 PF08651.10 gi|20090837|ref|NP_616912.1| - 0.012 15.3 10.9 0.11 12.3 4.6 3.0 1 1 1 2 2 2 0 DASH complex subunit Duo1 DUF4407 PF14362.6 gi|20090837|ref|NP_616912.1| - 0.035 13.5 8.9 0.065 12.6 8.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4795 PF16043.5 gi|20090837|ref|NP_616912.1| - 0.042 13.5 9.1 0.29 10.7 8.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) CorA PF01544.18 gi|20090837|ref|NP_616912.1| - 0.083 12.2 5.3 0.2 10.9 5.3 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Uds1 PF15456.6 gi|20090837|ref|NP_616912.1| - 0.084 13.0 11.6 0.4 10.8 9.3 2.8 2 0 0 2 2 2 0 Up-regulated During Septation DUF4527 PF15030.6 gi|20090837|ref|NP_616912.1| - 0.09 12.2 5.2 0.16 11.4 5.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) ACP_PD PF04336.12 gi|20090837|ref|NP_616912.1| - 0.093 13.2 3.0 0.82 10.1 0.0 3.1 2 1 0 2 2 2 0 Acyl carrier protein phosphodiesterase LMBR1 PF04791.16 gi|20090837|ref|NP_616912.1| - 0.093 11.6 1.6 0.13 11.1 1.6 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein DDHD PF02862.17 gi|20090837|ref|NP_616912.1| - 0.098 12.8 1.9 1.4 9.0 1.4 2.4 2 0 0 2 2 2 0 DDHD domain BAR PF03114.18 gi|20090837|ref|NP_616912.1| - 0.11 12.1 8.4 0.62 9.7 8.1 2.2 2 0 0 2 2 2 0 BAR domain HAUS-augmin3 PF14932.6 gi|20090837|ref|NP_616912.1| - 0.14 11.7 13.0 0.46 10.0 13.0 1.8 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Atg14 PF10186.9 gi|20090837|ref|NP_616912.1| - 0.14 11.2 9.5 0.29 10.2 9.5 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FapA PF03961.13 gi|20090837|ref|NP_616912.1| - 0.18 10.4 9.4 0.41 9.2 9.4 1.5 1 0 0 1 1 1 0 Flagellar Assembly Protein A TMPIT PF07851.13 gi|20090837|ref|NP_616912.1| - 0.31 10.2 6.2 0.73 9.0 6.2 1.5 1 0 0 1 1 1 0 TMPIT-like protein HemX PF04375.14 gi|20090837|ref|NP_616912.1| - 0.33 10.2 11.3 0.83 8.9 11.3 1.6 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase AAA_13 PF13166.6 gi|20090837|ref|NP_616912.1| - 0.35 9.5 10.2 0.5 9.0 9.1 1.8 2 0 0 2 2 2 0 AAA domain Laminin_II PF06009.12 gi|20090837|ref|NP_616912.1| - 0.35 10.9 14.1 0.5 10.4 8.1 2.6 1 1 1 2 2 2 0 Laminin Domain II Snapin_Pallidin PF14712.6 gi|20090837|ref|NP_616912.1| - 0.36 11.3 12.0 0.37 11.2 5.1 3.1 1 1 1 2 2 2 0 Snapin/Pallidin DUF3450 PF11932.8 gi|20090837|ref|NP_616912.1| - 0.39 10.0 11.3 0.86 8.9 11.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Prominin PF05478.11 gi|20090837|ref|NP_616912.1| - 0.61 8.0 4.0 0.2 9.6 1.0 1.6 2 0 0 2 2 2 0 Prominin Fusion_gly PF00523.18 gi|20090837|ref|NP_616912.1| - 0.68 8.1 7.3 3.4 5.8 7.1 2.0 1 1 0 1 1 1 0 Fusion glycoprotein F0 DUF1664 PF07889.12 gi|20090837|ref|NP_616912.1| - 0.84 9.7 11.1 2.4 8.2 4.4 2.8 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) TMCO5 PF14992.6 gi|20090837|ref|NP_616912.1| - 0.85 9.1 14.3 2.6 7.5 14.3 1.8 1 0 0 1 1 1 0 TMCO5 family Fmp27_WPPW PF10359.9 gi|20090837|ref|NP_616912.1| - 0.98 8.2 8.4 1.9 7.2 8.4 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain NPV_P10 PF05531.12 gi|20090837|ref|NP_616912.1| - 1.1 9.8 8.8 1.1e+02 3.4 8.2 3.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein HrpB7 PF09486.10 gi|20090837|ref|NP_616912.1| - 1.1 9.6 9.8 1.1 9.7 1.1 2.6 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) dCache_2 PF08269.11 gi|20090837|ref|NP_616912.1| - 1.3 8.1 6.2 3.5 6.7 5.9 1.9 2 0 0 2 2 2 0 Cache domain GAS PF13851.6 gi|20090837|ref|NP_616912.1| - 1.3 8.3 20.5 0.028 13.8 11.8 2.3 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|20090837|ref|NP_616912.1| - 1.4 9.0 29.8 0.11 12.6 22.4 2.7 2 1 0 2 2 1 0 TPR/MLP1/MLP2-like protein Rootletin PF15035.6 gi|20090837|ref|NP_616912.1| - 1.4 8.9 15.0 1.7 8.6 13.1 2.2 2 0 0 2 2 1 0 Ciliary rootlet component, centrosome cohesion MbeD_MobD PF04899.12 gi|20090837|ref|NP_616912.1| - 2 8.6 6.7 1.2 9.3 3.8 2.1 2 0 0 2 2 1 0 MbeD/MobD like DUF4201 PF13870.6 gi|20090837|ref|NP_616912.1| - 2.1 8.0 15.3 1.3 8.7 12.6 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF4201) DUF812 PF05667.11 gi|20090837|ref|NP_616912.1| - 2.3 7.0 18.1 0.41 9.5 11.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Seryl_tRNA_N PF02403.22 gi|20090837|ref|NP_616912.1| - 2.4 8.4 23.5 0.44 10.8 3.3 3.9 3 1 1 4 4 3 0 Seryl-tRNA synthetase N-terminal domain FliD_N PF02465.18 gi|20090837|ref|NP_616912.1| - 2.4 8.9 8.3 8.1 7.2 7.9 2.2 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Baculo_PEP_C PF04513.12 gi|20090837|ref|NP_616912.1| - 2.8 8.0 13.6 11 6.1 13.6 2.0 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus OmpH PF03938.14 gi|20090837|ref|NP_616912.1| - 3.2 8.1 19.2 0.069 13.5 11.2 2.4 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) UPF0449 PF15136.6 gi|20090837|ref|NP_616912.1| - 4.9 7.7 19.1 16 6.0 13.3 3.5 3 1 0 3 3 1 0 Uncharacterised protein family UPF0449 DUF745 PF05335.13 gi|20090837|ref|NP_616912.1| - 5.1 6.8 14.0 12 5.6 14.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Sec34 PF04136.15 gi|20090837|ref|NP_616912.1| - 6.5 6.6 10.1 12 5.7 6.3 2.8 2 1 0 2 2 2 0 Sec34-like family ADIP PF11559.8 gi|20090837|ref|NP_616912.1| - 7.5 6.6 21.1 0.14 12.3 13.3 2.0 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding Tho2 PF11262.8 gi|20090837|ref|NP_616912.1| - 7.5 5.6 8.6 1.5e+02 1.4 0.0 2.4 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 CHDCT2 PF08074.11 gi|20090837|ref|NP_616912.1| - 7.7 6.7 10.0 3.8 7.7 5.2 2.6 3 0 0 3 3 2 0 CHDCT2 (NUC038) domain FemAB PF02388.16 gi|20090837|ref|NP_616912.1| - 8.4 5.1 7.5 18 4.1 7.5 1.4 1 0 0 1 1 1 0 FemAB family Jnk-SapK_ap_N PF09744.9 gi|20090837|ref|NP_616912.1| - 8.9 6.5 23.0 0.16 12.2 14.6 2.4 2 1 0 2 2 1 0 JNK_SAPK-associated protein-1 Mod_r PF07200.13 gi|20090837|ref|NP_616912.1| - 8.9 6.4 20.1 0.46 10.6 13.1 2.5 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Leu_zip PF15294.6 gi|20090837|ref|NP_616912.1| - 9.8 5.6 20.2 0.4 10.2 12.2 2.4 2 0 0 2 2 2 0 Leucine zipper PAS_3 PF08447.12 gi|20090839|ref|NP_616914.1| - 5.5e-54 180.4 2.5 4e-19 68.7 0.1 5.2 5 0 0 5 5 4 4 PAS fold MEDS PF14417.6 gi|20090839|ref|NP_616914.1| - 2.5e-48 163.9 0.6 7.2e-48 162.5 0.2 2.1 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_9 PF13426.7 gi|20090839|ref|NP_616914.1| - 3.8e-36 123.5 4.0 4.5e-15 55.8 0.0 5.3 5 0 0 5 5 5 4 PAS domain PAS PF00989.25 gi|20090839|ref|NP_616914.1| - 8.6e-36 122.4 0.9 1.2e-14 54.2 0.1 4.7 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.12 gi|20090839|ref|NP_616914.1| - 2.7e-33 113.9 3.0 4.3e-33 113.2 0.9 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.10 gi|20090839|ref|NP_616914.1| - 2.4e-15 56.8 0.0 1.6e-10 41.2 0.0 4.3 4 0 0 4 4 4 1 PAS fold PAS_8 PF13188.7 gi|20090839|ref|NP_616914.1| - 2.2e-07 30.7 0.0 6.4e-06 26.1 0.0 3.3 4 0 0 4 4 4 1 PAS domain HATPase_c PF02518.26 gi|20090839|ref|NP_616914.1| - 2.3e-07 31.3 0.1 1e-06 29.2 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|20090839|ref|NP_616914.1| - 0.00058 20.5 0.0 0.0015 19.2 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20090839|ref|NP_616914.1| - 0.0081 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|20090839|ref|NP_616914.1| - 0.032 13.9 0.0 1.1 9.0 0.0 3.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain ATP-grasp_4 PF13535.6 gi|20090843|ref|NP_616918.1| - 2.4e-64 215.8 0.1 3.8e-64 215.1 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|20090843|ref|NP_616918.1| - 0.0019 18.3 0.0 0.0034 17.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|20090843|ref|NP_616918.1| - 0.2 11.1 1.7 1.1 8.8 0.3 2.8 3 1 0 3 3 3 0 D-ala D-ala ligase C-terminus Fasciclin PF02469.22 gi|20090844|ref|NP_616919.1| - 4.1e-34 117.6 0.1 8.4e-34 116.5 0.1 1.5 1 0 0 1 1 1 1 Fasciclin domain Atg14 PF10186.9 gi|20090845|ref|NP_616920.1| - 7.2e-07 28.6 10.0 1.2e-06 27.9 10.0 1.3 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 HemX PF04375.14 gi|20090845|ref|NP_616920.1| - 3.4e-05 23.3 0.7 3.7e-05 23.2 0.7 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase FliJ PF02050.16 gi|20090845|ref|NP_616920.1| - 0.00019 21.7 2.9 0.00026 21.2 2.9 1.2 1 0 0 1 1 1 1 Flagellar FliJ protein Spc7 PF08317.11 gi|20090845|ref|NP_616920.1| - 0.00022 20.2 11.7 0.0003 19.8 11.7 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein UPF0242 PF06785.11 gi|20090845|ref|NP_616920.1| - 0.00031 20.9 10.9 0.00094 19.3 10.8 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF2500 PF10694.9 gi|20090845|ref|NP_616920.1| - 0.00036 21.0 1.4 0.015 15.8 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF2500) Exonuc_VII_L PF02601.15 gi|20090845|ref|NP_616920.1| - 0.0005 19.7 5.6 0.0006 19.5 5.6 1.0 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF948 PF06103.11 gi|20090845|ref|NP_616920.1| - 0.00099 19.3 2.3 0.0012 19.0 1.6 1.5 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.8 gi|20090845|ref|NP_616920.1| - 0.0012 18.2 3.1 0.0013 18.1 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF3347 PF11827.8 gi|20090845|ref|NP_616920.1| - 0.0014 18.8 7.4 0.033 14.4 1.8 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3347) Med9 PF07544.13 gi|20090845|ref|NP_616920.1| - 0.0017 18.4 10.1 0.3 11.2 0.4 2.6 1 1 2 3 3 3 3 RNA polymerase II transcription mediator complex subunit 9 IFT57 PF10498.9 gi|20090845|ref|NP_616920.1| - 0.0019 17.2 9.1 0.0026 16.8 9.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 EzrA PF06160.12 gi|20090845|ref|NP_616920.1| - 0.0021 16.3 12.5 0.0026 16.0 12.5 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF3552 PF12072.8 gi|20090845|ref|NP_616920.1| - 0.0024 17.3 14.0 0.0045 16.4 14.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) ATG16 PF08614.11 gi|20090845|ref|NP_616920.1| - 0.0025 18.1 11.0 0.0033 17.7 11.0 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Vps5 PF09325.10 gi|20090845|ref|NP_616920.1| - 0.0027 17.3 4.0 0.0037 16.9 4.0 1.3 1 0 0 1 1 1 1 Vps5 C terminal like Prominin PF05478.11 gi|20090845|ref|NP_616920.1| - 0.0031 15.6 6.0 0.0046 15.0 6.0 1.3 1 0 0 1 1 1 1 Prominin Filament PF00038.21 gi|20090845|ref|NP_616920.1| - 0.0032 17.1 10.5 0.0036 16.9 10.5 1.0 1 0 0 1 1 1 1 Intermediate filament protein DUF4407 PF14362.6 gi|20090845|ref|NP_616920.1| - 0.0037 16.7 1.5 0.0041 16.5 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) HOOK PF05622.12 gi|20090845|ref|NP_616920.1| - 0.0051 15.0 9.8 0.0062 14.7 9.8 1.0 1 0 0 1 1 1 1 HOOK protein DUF1664 PF07889.12 gi|20090845|ref|NP_616920.1| - 0.0058 16.7 6.2 0.0077 16.3 2.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF4201 PF13870.6 gi|20090845|ref|NP_616920.1| - 0.0069 16.1 14.0 0.019 14.7 14.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) DUF3080 PF11279.8 gi|20090845|ref|NP_616920.1| - 0.0099 15.1 4.5 0.012 14.8 4.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3080) TMPIT PF07851.13 gi|20090845|ref|NP_616920.1| - 0.011 15.0 7.5 0.014 14.7 7.5 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF812 PF05667.11 gi|20090845|ref|NP_616920.1| - 0.011 14.6 8.1 0.012 14.5 8.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) HMMR_N PF15905.5 gi|20090845|ref|NP_616920.1| - 0.013 15.0 12.0 0.015 14.8 12.0 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal HAP1_N PF04849.13 gi|20090845|ref|NP_616920.1| - 0.013 14.7 10.3 0.024 13.8 10.3 1.4 1 1 0 1 1 1 0 HAP1 N-terminal conserved region MIP-T3_C PF17749.1 gi|20090845|ref|NP_616920.1| - 0.013 15.4 12.0 0.35 10.8 1.1 2.4 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region YgaB PF14182.6 gi|20090845|ref|NP_616920.1| - 0.014 15.8 6.9 2.1 8.8 1.2 3.0 1 1 2 3 3 3 0 YgaB-like protein YtxH PF12732.7 gi|20090845|ref|NP_616920.1| - 0.014 15.9 3.0 0.3 11.6 3.0 2.3 1 1 0 1 1 1 0 YtxH-like protein Laminin_II PF06009.12 gi|20090845|ref|NP_616920.1| - 0.014 15.4 12.4 0.06 13.4 12.4 1.8 1 1 0 1 1 1 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|20090845|ref|NP_616920.1| - 0.015 15.5 12.8 0.37 11.0 13.4 2.0 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Mod_r PF07200.13 gi|20090845|ref|NP_616920.1| - 0.017 15.3 12.3 0.031 14.4 12.3 1.4 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Fib_alpha PF08702.10 gi|20090845|ref|NP_616920.1| - 0.017 15.3 11.4 0.035 14.3 11.3 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4972 PF16342.5 gi|20090845|ref|NP_616920.1| - 0.017 14.8 1.4 0.054 13.2 1.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4972) NleF_casp_inhib PF16809.5 gi|20090845|ref|NP_616920.1| - 0.019 14.8 8.8 0.029 14.3 8.8 1.3 1 0 0 1 1 1 0 NleF caspase inhibitor I_LWEQ PF01608.17 gi|20090845|ref|NP_616920.1| - 0.02 15.2 6.1 0.024 14.9 6.1 1.0 1 0 0 1 1 1 0 I/LWEQ domain Phage_GPO PF05929.11 gi|20090845|ref|NP_616920.1| - 0.022 14.4 1.9 0.027 14.1 1.9 1.2 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Ly49 PF08391.10 gi|20090845|ref|NP_616920.1| - 0.024 15.0 5.8 0.038 14.4 5.8 1.4 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region Golgin_A5 PF09787.9 gi|20090845|ref|NP_616920.1| - 0.028 13.9 8.7 0.038 13.5 8.7 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF745 PF05335.13 gi|20090845|ref|NP_616920.1| - 0.032 14.0 3.9 0.046 13.4 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) COG2 PF06148.11 gi|20090845|ref|NP_616920.1| - 0.033 14.3 8.8 0.12 12.4 2.1 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 YscO PF07321.12 gi|20090845|ref|NP_616920.1| - 0.035 14.1 5.4 1.3 8.9 0.6 2.0 1 1 1 2 2 2 0 Type III secretion protein YscO PCYCGC PF13798.6 gi|20090845|ref|NP_616920.1| - 0.036 13.9 0.3 0.043 13.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function with PCYCGC motif Sec34 PF04136.15 gi|20090845|ref|NP_616920.1| - 0.04 13.8 10.3 0.13 12.1 4.4 2.0 1 1 1 2 2 2 0 Sec34-like family TarH PF02203.15 gi|20090845|ref|NP_616920.1| - 0.041 13.8 2.6 0.11 12.5 1.1 1.9 1 1 1 2 2 2 0 Tar ligand binding domain homologue DUF2206 PF09971.9 gi|20090845|ref|NP_616920.1| - 0.042 12.6 0.3 0.047 12.4 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) COG5 PF10392.9 gi|20090845|ref|NP_616920.1| - 0.042 14.0 6.0 0.061 13.5 6.0 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 Prefoldin PF02996.17 gi|20090845|ref|NP_616920.1| - 0.043 13.7 8.4 0.61 10.0 2.0 2.3 1 1 1 2 2 2 0 Prefoldin subunit Peptidase_S49_N PF08496.10 gi|20090845|ref|NP_616920.1| - 0.068 13.2 2.4 0.13 12.3 2.4 1.6 1 1 0 1 1 1 0 Peptidase family S49 N-terminal Importin_rep_6 PF18829.1 gi|20090845|ref|NP_616920.1| - 0.07 13.3 5.2 1.1 9.5 0.5 2.1 1 1 1 2 2 2 0 Importin repeat 6 FAM76 PF16046.5 gi|20090845|ref|NP_616920.1| - 0.086 12.2 5.7 0.1 11.9 5.7 1.1 1 0 0 1 1 1 0 FAM76 protein NPV_P10 PF05531.12 gi|20090845|ref|NP_616920.1| - 0.086 13.3 5.1 1.3 9.5 5.1 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein HIP1_clath_bdg PF16515.5 gi|20090845|ref|NP_616920.1| - 0.091 13.4 11.6 1 10.0 3.9 2.1 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 UPF0449 PF15136.6 gi|20090845|ref|NP_616920.1| - 0.099 13.1 11.5 2.5 8.6 5.8 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 DUF16 PF01519.16 gi|20090845|ref|NP_616920.1| - 0.1 13.1 8.0 2.3 8.8 8.0 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 LepB_GAP_C PF18227.1 gi|20090845|ref|NP_616920.1| - 0.11 13.0 2.5 6.8 7.3 0.3 2.3 1 1 1 2 2 2 0 LepB GAP domain C-terminal subdomain Syntaxin_2 PF14523.6 gi|20090845|ref|NP_616920.1| - 0.11 12.8 14.3 0.78 10.1 6.1 2.0 1 1 1 2 2 2 0 Syntaxin-like protein YbbR PF07949.12 gi|20090845|ref|NP_616920.1| - 0.12 12.8 2.9 9.4 6.7 0.4 2.3 1 1 1 2 2 2 0 YbbR-like protein MetOD2 PF18548.1 gi|20090845|ref|NP_616920.1| - 0.15 12.2 11.9 3.9 7.7 2.4 3.0 1 1 2 3 3 3 0 Metanogen output domain 2 DUF848 PF05852.11 gi|20090845|ref|NP_616920.1| - 0.15 12.1 8.8 0.26 11.4 8.8 1.4 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF2730 PF10805.8 gi|20090845|ref|NP_616920.1| - 0.17 12.0 5.8 0.7 10.0 2.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) ETRAMP PF09716.10 gi|20090845|ref|NP_616920.1| - 0.18 11.9 2.0 0.55 10.3 2.0 2.0 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) CC2-LZ PF16516.5 gi|20090845|ref|NP_616920.1| - 0.18 12.2 9.2 0.79 10.1 3.0 2.1 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF4200 PF13863.6 gi|20090845|ref|NP_616920.1| - 0.19 12.1 10.8 1 9.8 1.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Fez1 PF06818.15 gi|20090845|ref|NP_616920.1| - 0.19 12.1 10.6 0.26 11.7 10.6 1.2 1 0 0 1 1 1 0 Fez1 BLOC1_2 PF10046.9 gi|20090845|ref|NP_616920.1| - 0.2 12.0 12.3 0.14 12.5 7.0 1.9 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DHR10 PF18595.1 gi|20090845|ref|NP_616920.1| - 0.21 11.7 11.4 0.17 12.0 8.4 1.8 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain SlyX PF04102.12 gi|20090845|ref|NP_616920.1| - 0.22 12.1 2.7 0.44 11.2 1.4 1.8 1 1 1 2 2 2 0 SlyX FmiP_Thoc5 PF09766.9 gi|20090845|ref|NP_616920.1| - 0.24 10.7 11.5 3.9 6.7 11.5 2.0 1 1 0 1 1 1 0 Fms-interacting protein/Thoc5 DUF724 PF05266.14 gi|20090845|ref|NP_616920.1| - 0.27 11.1 10.3 0.32 10.8 10.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Pinin_SDK_N PF04697.13 gi|20090845|ref|NP_616920.1| - 0.32 11.7 8.7 10 6.7 0.6 3.1 1 1 2 3 3 3 0 pinin/SDK conserved region Prefoldin_2 PF01920.20 gi|20090845|ref|NP_616920.1| - 0.37 10.8 13.1 1.3 9.0 3.3 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF4795 PF16043.5 gi|20090845|ref|NP_616920.1| - 0.37 10.4 9.7 0.97 9.0 9.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) YkyA PF10368.9 gi|20090845|ref|NP_616920.1| - 0.38 10.4 14.6 2 8.1 14.7 1.8 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein LUC7 PF03194.15 gi|20090845|ref|NP_616920.1| - 0.51 10.0 6.9 0.61 9.7 6.9 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Flagellin_C PF00700.21 gi|20090845|ref|NP_616920.1| - 0.53 10.7 7.4 4 7.8 1.7 2.6 1 1 1 2 2 2 0 Bacterial flagellin C-terminal helical region V_ATPase_I PF01496.19 gi|20090845|ref|NP_616920.1| - 0.69 7.8 5.0 0.82 7.5 5.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Conotoxin PF02950.17 gi|20090845|ref|NP_616920.1| - 0.77 10.8 2.4 1.2 10.3 0.3 2.0 1 1 1 2 2 2 0 Conotoxin Fmp27_WPPW PF10359.9 gi|20090845|ref|NP_616920.1| - 0.82 8.4 10.8 0.95 8.2 10.8 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Holin_BhlA PF10960.8 gi|20090845|ref|NP_616920.1| - 0.85 9.6 7.3 4.8 7.2 3.1 2.4 1 1 1 2 2 2 0 BhlA holin family USP8_interact PF08941.10 gi|20090845|ref|NP_616920.1| - 0.89 9.3 5.2 7 6.4 4.9 2.1 1 1 0 1 1 1 0 USP8 interacting DLP_helical PF18709.1 gi|20090845|ref|NP_616920.1| - 0.96 8.6 12.1 1.3 8.2 2.0 2.0 1 1 1 2 2 2 0 Dynamin-like helical domain HalX PF08663.10 gi|20090845|ref|NP_616920.1| - 1.3 9.4 8.0 3.7 7.9 1.5 2.1 1 1 1 2 2 2 0 HalX domain Sec8_exocyst PF04048.14 gi|20090845|ref|NP_616920.1| - 1.5 8.7 9.9 56 3.6 9.9 2.1 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain SID-1_RNA_chan PF13965.6 gi|20090845|ref|NP_616920.1| - 1.5 7.1 3.4 1.7 7.0 3.4 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 GPHR_N PF12537.8 gi|20090845|ref|NP_616920.1| - 2.5 8.3 7.1 15 5.7 0.7 2.6 1 1 1 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal RmuC PF02646.16 gi|20090845|ref|NP_616920.1| - 2.5 7.2 10.4 13 4.8 10.3 1.9 1 1 0 1 1 1 0 RmuC family TMF_DNA_bd PF12329.8 gi|20090845|ref|NP_616920.1| - 3.5 7.7 21.3 2 8.5 12.4 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4446 PF14584.6 gi|20090845|ref|NP_616920.1| - 3.9 7.5 9.8 3.9 7.5 5.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Lectin_N PF03954.14 gi|20090845|ref|NP_616920.1| - 5.8 6.7 8.9 23 4.8 8.9 2.0 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain XhlA PF10779.9 gi|20090845|ref|NP_616920.1| - 7.3 6.9 17.1 10 6.4 6.5 2.4 1 1 1 2 2 2 0 Haemolysin XhlA DUF4061 PF13270.6 gi|20090845|ref|NP_616920.1| - 7.3 7.0 10.8 1.2e+02 3.1 10.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4061) GLE1 PF07817.13 gi|20090845|ref|NP_616920.1| - 7.6 5.7 6.3 21 4.2 6.3 1.7 1 1 0 1 1 1 0 GLE1-like protein SpoIIAA-like PF11964.8 gi|20090846|ref|NP_616921.1| - 5.5e-19 69.0 0.2 6.2e-19 68.9 0.2 1.0 1 0 0 1 1 1 1 SpoIIAA-like Phage_XkdX PF09693.10 gi|20090846|ref|NP_616921.1| - 0.013 15.5 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) Sulfate_transp PF00916.20 gi|20090847|ref|NP_616922.1| - 2e-70 237.5 31.3 3.2e-70 236.8 31.3 1.2 1 0 0 1 1 1 1 Sulfate permease family STAS PF01740.21 gi|20090847|ref|NP_616922.1| - 4.4e-14 52.1 0.2 9.7e-14 51.0 0.2 1.5 1 0 0 1 1 1 1 STAS domain OAD_gamma PF04277.13 gi|20090847|ref|NP_616922.1| - 0.018 15.6 0.7 0.12 13.0 0.7 2.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Alpha-amylase PF00128.24 gi|20090848|ref|NP_616923.1| - 3.6e-22 79.4 0.1 1.4e-16 61.0 0.1 3.3 2 1 1 3 3 3 2 Alpha amylase, catalytic domain CBM_48 PF02922.18 gi|20090848|ref|NP_616923.1| - 1.7e-11 44.3 0.0 0.00034 20.9 0.0 2.8 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Pur_ac_phosph_N PF16656.5 gi|20090848|ref|NP_616923.1| - 0.012 16.2 1.2 0.029 15.0 0.0 2.2 3 0 0 3 3 3 0 Purple acid Phosphatase, N-terminal domain hDGE_amylase PF14701.6 gi|20090848|ref|NP_616923.1| - 0.045 12.9 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain Peptidase_M13_N PF05649.13 gi|20090849|ref|NP_616924.1| - 1.3e-100 337.7 0.4 1.8e-100 337.4 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 gi|20090849|ref|NP_616924.1| - 3.9e-68 229.1 0.0 6.4e-68 228.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 DUF1100 PF06500.11 gi|20090850|ref|NP_616925.1| - 2.5e-12 46.3 0.0 3.5e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S9 PF00326.21 gi|20090850|ref|NP_616925.1| - 2.1e-09 37.1 0.0 5.6e-07 29.2 0.0 2.7 1 1 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|20090850|ref|NP_616925.1| - 6.9e-05 23.5 0.0 0.00022 21.9 0.0 1.8 1 1 1 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|20090850|ref|NP_616925.1| - 0.00045 19.0 0.0 0.025 13.3 0.0 2.4 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|20090850|ref|NP_616925.1| - 0.0016 17.8 0.0 0.0097 15.2 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|20090850|ref|NP_616925.1| - 0.009 16.0 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.20 gi|20090850|ref|NP_616925.1| - 0.012 15.3 0.0 0.059 13.0 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|20090850|ref|NP_616925.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 alpha/beta hydrolase fold SBF PF01758.16 gi|20090851|ref|NP_616926.1| - 1.7e-40 138.8 20.0 3.4e-40 137.8 20.0 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|20090851|ref|NP_616926.1| - 9.9e-18 64.5 23.5 1.2e-17 64.2 23.5 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|20090851|ref|NP_616926.1| - 0.51 8.7 23.0 0.037 12.4 11.8 2.7 1 1 2 3 3 3 0 Membrane transport protein S4 PF01479.25 gi|20090852|ref|NP_616927.1| - 6e-13 48.3 0.6 1.8e-12 46.7 0.2 2.1 2 0 0 2 2 2 1 S4 domain FtsJ PF01728.19 gi|20090852|ref|NP_616927.1| - 2.7e-08 34.1 0.0 5.2e-08 33.2 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|20090852|ref|NP_616927.1| - 1.1e-06 28.5 0.0 7.3e-06 25.9 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090852|ref|NP_616927.1| - 1.8e-06 28.6 0.0 6e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Fibrillarin PF01269.17 gi|20090852|ref|NP_616927.1| - 2.3e-06 26.9 0.0 3.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin S4_2 PF13275.6 gi|20090852|ref|NP_616927.1| - 9.1e-05 22.2 0.1 0.00021 21.0 0.1 1.6 1 0 0 1 1 1 1 S4 domain Methyltransf_11 PF08241.12 gi|20090852|ref|NP_616927.1| - 9.9e-05 22.9 0.0 0.00035 21.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090852|ref|NP_616927.1| - 0.00095 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|20090852|ref|NP_616927.1| - 0.0045 18.0 0.0 0.0082 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|20090852|ref|NP_616927.1| - 0.072 12.7 0.1 0.83 9.2 0.0 2.1 1 1 1 2 2 2 0 Methionine biosynthesis protein MetW DUF2119 PF09892.9 gi|20090853|ref|NP_616928.1| - 3.6e-68 228.7 0.0 4.8e-68 228.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) zf-ribbon_3 PF13248.6 gi|20090854|ref|NP_616929.1| - 4.7e-05 22.7 2.9 8.3e-05 21.9 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|20090854|ref|NP_616929.1| - 0.00057 19.9 0.8 0.0011 18.9 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|20090854|ref|NP_616929.1| - 0.0018 17.9 5.0 0.0036 17.0 5.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain NRN1 PF15056.6 gi|20090854|ref|NP_616929.1| - 0.0028 17.7 0.1 0.0056 16.7 0.1 1.4 1 0 0 1 1 1 1 Neuritin protein family Transglut_core PF01841.19 gi|20090854|ref|NP_616929.1| - 0.016 15.7 0.1 0.033 14.6 0.1 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily DUF2116 PF09889.9 gi|20090854|ref|NP_616929.1| - 1.3 9.1 3.2 3.7 7.6 1.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF4277 PF14104.6 gi|20090855|ref|NP_616930.1| - 3.2e-38 130.4 0.0 7.7e-38 129.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20090855|ref|NP_616930.1| - 1.6e-11 44.3 0.3 6.4e-11 42.3 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20090855|ref|NP_616930.1| - 0.062 13.6 0.2 11 6.4 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute Na_Ca_ex PF01699.24 gi|20090856|ref|NP_616931.1| - 2.1e-58 196.5 43.4 2.3e-29 102.3 16.8 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Wzy_C PF04932.15 gi|20090856|ref|NP_616931.1| - 0.061 13.0 0.2 0.061 13.0 0.2 3.1 3 2 0 3 3 3 0 O-Antigen ligase Flg_bb_rod PF00460.20 gi|20090856|ref|NP_616931.1| - 3.4 7.7 8.0 12 6.0 2.5 2.4 2 0 0 2 2 2 0 Flagella basal body rod protein Lactamase_B PF00753.27 gi|20090857|ref|NP_616932.1| - 4e-27 95.5 1.7 4.9e-27 95.2 1.7 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20090857|ref|NP_616932.1| - 4.7e-05 23.0 0.1 7.3e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|20090857|ref|NP_616932.1| - 0.011 15.1 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|20090857|ref|NP_616932.1| - 0.024 14.1 0.0 0.054 13.0 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|20090857|ref|NP_616932.1| - 0.032 14.1 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|20090857|ref|NP_616932.1| - 0.15 12.0 0.1 6.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain CTP_transf_1 PF01148.20 gi|20090858|ref|NP_616933.1| - 0.00094 19.0 12.6 0.0074 16.1 12.6 2.0 1 1 0 1 1 1 1 Cytidylyltransferase family Glyoxalase_6 PF18029.1 gi|20090859|ref|NP_616934.1| - 1.6e-07 32.0 0.0 2.1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|20090859|ref|NP_616934.1| - 0.0002 21.5 0.0 0.00064 19.9 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Response_reg PF00072.24 gi|20090860|ref|NP_616935.1| - 1.7e-26 92.6 0.0 1.9e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|20090861|ref|NP_616936.1| - 1.2e-37 128.1 0.2 1.1e-16 60.8 0.0 3.8 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|20090861|ref|NP_616936.1| - 5.8e-33 113.7 0.0 1.5e-32 112.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|20090861|ref|NP_616936.1| - 4.5e-27 94.4 0.0 9.6e-27 93.4 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|20090861|ref|NP_616936.1| - 1.6e-22 79.3 1.4 4.3e-22 77.9 0.5 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|20090861|ref|NP_616936.1| - 1.6e-19 70.0 0.0 4.6e-07 29.8 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|20090861|ref|NP_616936.1| - 9.2e-19 67.6 0.0 1.5e-09 38.0 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|20090861|ref|NP_616936.1| - 9.3e-13 48.4 0.1 1.6e-05 25.1 0.1 3.4 3 0 0 3 3 3 2 PAS fold Hpt PF01627.23 gi|20090861|ref|NP_616936.1| - 8.6e-12 45.2 1.0 3e-11 43.4 0.1 2.5 2 0 0 2 2 2 1 Hpt domain PAS_8 PF13188.7 gi|20090861|ref|NP_616936.1| - 0.0076 16.3 0.0 0.026 14.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain tRNA_SAD PF07973.14 gi|20090862|ref|NP_616937.1| - 4.3e-14 52.3 0.5 7.8e-14 51.5 0.5 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|20090862|ref|NP_616937.1| - 5.4e-14 51.6 0.0 8.8e-14 50.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) DUF4199 PF13858.6 gi|20090863|ref|NP_616938.1| - 0.031 14.7 1.3 0.18 12.2 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF4366 PF14283.6 gi|20090863|ref|NP_616938.1| - 0.27 11.3 3.2 7.7 6.5 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4366) DDE_Tnp_1 PF01609.21 gi|20090864|ref|NP_616939.1| - 1.2e-08 34.9 0.8 1.8e-08 34.3 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain HTH_12 PF08461.10 gi|20090864|ref|NP_616939.1| - 0.016 15.2 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF3931 PF13082.6 gi|20090864|ref|NP_616939.1| - 0.041 14.0 1.0 0.24 11.6 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3931) Phage_GP20 PF06810.11 gi|20090864|ref|NP_616939.1| - 0.099 12.4 1.9 2.1 8.1 0.3 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 NosD PF05048.13 gi|20090865|ref|NP_616940.1| - 5.2e-30 104.5 11.5 1.6e-29 102.9 11.5 1.8 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Peptidase_S8 PF00082.22 gi|20090865|ref|NP_616940.1| - 2.3e-17 63.2 0.6 3e-11 43.1 0.1 3.0 2 1 1 3 3 3 2 Subtilase family Beta_helix PF13229.6 gi|20090865|ref|NP_616940.1| - 6.5e-09 35.8 9.5 2.6e-08 33.9 9.5 2.1 1 0 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.11 gi|20090865|ref|NP_616940.1| - 7.7e-05 22.1 1.1 0.0019 17.6 0.6 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF1565) Pectinesterase PF01095.19 gi|20090865|ref|NP_616940.1| - 0.093 11.4 0.0 0.16 10.6 0.0 1.4 1 0 0 1 1 1 0 Pectinesterase Tropomyosin_1 PF12718.7 gi|20090867|ref|NP_616942.1| - 0.0098 16.1 43.1 0.18 11.9 0.7 4.5 3 1 1 4 4 4 3 Tropomyosin like DHR10 PF18595.1 gi|20090867|ref|NP_616942.1| - 0.015 15.4 7.9 0.015 15.4 7.9 4.2 3 1 0 3 3 3 0 Designed helical repeat protein 10 domain DUF1664 PF07889.12 gi|20090867|ref|NP_616942.1| - 0.021 14.8 16.2 0.039 14.0 0.1 4.6 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|20090867|ref|NP_616942.1| - 0.14 12.1 23.8 0.091 12.8 2.7 3.9 2 2 2 4 4 4 0 Laminin Domain II Baculo_PEP_C PF04513.12 gi|20090867|ref|NP_616942.1| - 0.23 11.5 12.0 17 5.4 2.1 4.3 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Terminase_3C PF17288.2 gi|20090867|ref|NP_616942.1| - 0.33 11.3 4.1 0.11 12.9 0.6 2.0 2 0 0 2 2 2 0 Terminase RNAseH like domain ZapB PF06005.12 gi|20090867|ref|NP_616942.1| - 0.33 11.4 0.2 0.33 11.4 0.2 5.0 5 1 0 5 5 5 0 Cell division protein ZapB DUF4407 PF14362.6 gi|20090867|ref|NP_616942.1| - 0.41 10.0 22.3 0.055 12.8 4.2 2.9 2 1 0 3 3 3 0 Domain of unknown function (DUF4407) GAS PF13851.6 gi|20090867|ref|NP_616942.1| - 1.7 8.0 40.7 0.056 12.8 8.2 3.6 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding FUSC PF04632.12 gi|20090867|ref|NP_616942.1| - 5.7 5.4 6.4 1.1 7.7 0.7 2.1 1 1 0 2 2 2 0 Fusaric acid resistance protein family T4SS PF07996.11 gi|20090867|ref|NP_616942.1| - 5.8 7.3 17.7 0.16 12.4 4.2 3.7 2 1 2 4 4 4 0 Type IV secretion system proteins rve PF00665.26 gi|20090868|ref|NP_616943.1| - 3.2e-13 49.9 0.0 5.1e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090868|ref|NP_616943.1| - 3e-05 23.7 0.2 6.9e-05 22.5 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20090868|ref|NP_616943.1| - 0.00012 21.7 0.1 0.0056 16.4 0.1 2.7 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20090868|ref|NP_616943.1| - 0.038 13.4 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20090868|ref|NP_616943.1| - 0.046 13.8 0.1 0.11 12.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090868|ref|NP_616943.1| - 0.065 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20090868|ref|NP_616943.1| - 0.13 12.1 0.3 0.39 10.5 0.1 1.9 2 0 0 2 2 2 0 Lsm C-terminal NHL PF01436.21 gi|20090869|ref|NP_616944.1| - 1.4e-57 188.9 11.5 2.3e-10 40.0 0.1 6.4 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.11 gi|20090869|ref|NP_616944.1| - 1.4e-30 105.0 23.2 3.8e-05 23.6 0.2 6.6 6 0 0 6 6 6 6 Beta-propeller repeat SGL PF08450.12 gi|20090869|ref|NP_616944.1| - 3.5e-25 89.0 5.7 0.00014 21.5 0.1 5.9 1 1 5 6 6 6 6 SMP-30/Gluconolactonase/LRE-like region Phytase-like PF13449.6 gi|20090869|ref|NP_616944.1| - 1.5e-14 54.6 1.5 0.027 14.4 0.0 5.9 2 2 4 6 6 6 4 Esterase-like activity of phytase DUF5128 PF17170.4 gi|20090869|ref|NP_616944.1| - 4.1e-14 52.5 10.4 2.2e-06 27.1 0.3 3.7 1 1 2 4 4 4 3 6-bladed beta-propeller SdiA-regulated PF06977.11 gi|20090869|ref|NP_616944.1| - 3.9e-08 32.8 1.4 0.17 11.0 0.0 5.5 5 1 0 5 5 5 2 SdiA-regulated Reg_prop PF07494.11 gi|20090869|ref|NP_616944.1| - 1.5e-05 24.6 1.1 58 4.4 0.0 6.2 6 0 0 6 6 6 0 Two component regulator propeller US22 PF02393.16 gi|20090869|ref|NP_616944.1| - 1.7e-05 25.1 0.2 64 3.8 0.0 5.7 5 1 0 6 6 6 0 US22 like MRJP PF03022.16 gi|20090869|ref|NP_616944.1| - 0.00087 18.7 1.0 2.7 7.3 0.0 3.6 1 1 3 4 4 4 2 Major royal jelly protein Ntox33 PF15533.6 gi|20090869|ref|NP_616944.1| - 0.00094 19.6 3.6 3.1 8.4 0.1 5.3 5 1 1 6 6 6 1 Bacterial toxin 33 Cytotoxic PF09000.10 gi|20090869|ref|NP_616944.1| - 0.051 13.9 5.4 49 4.4 0.0 4.9 4 1 1 5 5 5 0 Cytotoxic Ldl_recept_b PF00058.17 gi|20090869|ref|NP_616944.1| - 0.11 13.0 4.5 19 5.9 0.0 5.3 6 2 0 6 6 5 0 Low-density lipoprotein receptor repeat class B Antistasin PF02822.14 gi|20090869|ref|NP_616944.1| - 0.2 12.3 0.2 1.9e+02 2.8 0.0 4.4 6 0 0 6 6 5 0 Antistasin family Herpes_LMP2 PF07415.11 gi|20090869|ref|NP_616944.1| - 0.21 10.3 1.3 0.42 9.3 0.2 2.0 3 0 0 3 3 3 0 Gammaherpesvirus latent membrane protein (LMP2) protein BpuJI_N PF11564.8 gi|20090869|ref|NP_616944.1| - 0.34 10.1 0.9 50 3.0 0.0 3.9 5 0 0 5 5 5 0 Restriction endonuclease BpuJI - N terminal Ribosomal_L19 PF01245.20 gi|20090869|ref|NP_616944.1| - 0.49 10.4 1.9 72 3.4 0.0 4.1 6 0 0 6 6 6 0 Ribosomal protein L19 PQQ PF01011.21 gi|20090869|ref|NP_616944.1| - 0.68 10.0 9.0 43 4.3 0.1 4.9 5 0 0 5 5 4 0 PQQ enzyme repeat NINJA_B PF16136.5 gi|20090869|ref|NP_616944.1| - 4 7.9 4.9 41 4.6 0.1 3.4 2 1 2 4 4 4 0 Putative nuclear localisation signal Ribosomal_S17 PF00366.20 gi|20090872|ref|NP_616947.1| - 5.2e-19 68.1 0.4 9.9e-19 67.2 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S17 Glyco_hydro_127 PF07944.12 gi|20090872|ref|NP_616947.1| - 0.0025 16.4 0.0 0.0043 15.6 0.0 1.3 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 DUF2730 PF10805.8 gi|20090872|ref|NP_616947.1| - 0.0033 17.5 0.2 0.046 13.8 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2730) MukB_hinge PF16330.5 gi|20090872|ref|NP_616947.1| - 0.029 14.1 0.1 0.14 11.8 0.0 2.2 2 0 0 2 2 2 0 MukB hinge domain Ribosomal_S17_N PF16205.5 gi|20090872|ref|NP_616947.1| - 0.034 14.5 0.0 0.1 13.0 0.0 1.9 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal DUF4606 PF15379.6 gi|20090872|ref|NP_616947.1| - 0.062 13.6 3.2 5 7.4 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4606) LPP PF04728.13 gi|20090872|ref|NP_616947.1| - 0.29 11.5 3.5 42 4.6 0.1 4.1 4 0 0 4 4 4 0 Lipoprotein leucine-zipper HsbA PF12296.8 gi|20090872|ref|NP_616947.1| - 0.3 11.5 1.7 22 5.5 0.2 3.1 2 1 1 3 3 3 0 Hydrophobic surface binding protein A DUF5082 PF16888.5 gi|20090872|ref|NP_616947.1| - 1.1 9.6 7.6 2.8 8.2 0.2 3.5 5 0 0 5 5 5 0 Domain of unknown function (DUF5082) Phage_integrase PF00589.22 gi|20090874|ref|NP_616949.1| - 2e-11 44.0 0.0 6.3e-10 39.1 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family rve PF00665.26 gi|20090875|ref|NP_616950.1| - 3.4e-24 85.3 0.0 6e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20090875|ref|NP_616950.1| - 1.4e-05 25.0 0.2 3.4e-05 23.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.6 gi|20090875|ref|NP_616950.1| - 9.5e-05 22.1 0.0 0.00021 21.0 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20090875|ref|NP_616950.1| - 9.9e-05 22.0 0.0 0.00039 20.1 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|20090875|ref|NP_616950.1| - 0.00016 21.3 0.2 0.00033 20.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20090875|ref|NP_616950.1| - 0.0029 17.6 0.0 0.0091 16.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix Terminase_5 PF06056.12 gi|20090875|ref|NP_616950.1| - 0.0065 16.3 0.0 0.058 13.3 0.0 2.3 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4 PF04545.16 gi|20090875|ref|NP_616950.1| - 0.01 15.3 0.2 0.055 13.0 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_Tc3_1 PF11427.8 gi|20090875|ref|NP_616950.1| - 0.012 15.5 0.0 0.042 13.7 0.0 1.9 1 0 0 1 1 1 0 Tc3 transposase HTH_3 PF01381.22 gi|20090875|ref|NP_616950.1| - 0.018 15.1 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|20090875|ref|NP_616950.1| - 0.063 13.0 0.1 0.18 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20090875|ref|NP_616950.1| - 0.092 12.6 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein NUMOD1 PF07453.13 gi|20090875|ref|NP_616950.1| - 0.13 12.5 0.0 5.5 7.4 0.0 2.6 2 0 0 2 2 2 0 NUMOD1 domain HTH_28 PF13518.6 gi|20090875|ref|NP_616950.1| - 0.15 12.2 0.0 0.44 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20090875|ref|NP_616950.1| - 0.2 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding IstB_IS21 PF01695.17 gi|20090876|ref|NP_616951.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20090876|ref|NP_616951.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20090876|ref|NP_616951.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20090876|ref|NP_616951.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20090876|ref|NP_616951.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20090876|ref|NP_616951.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20090876|ref|NP_616951.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20090876|ref|NP_616951.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20090876|ref|NP_616951.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20090876|ref|NP_616951.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20090876|ref|NP_616951.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20090876|ref|NP_616951.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20090876|ref|NP_616951.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20090876|ref|NP_616951.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090876|ref|NP_616951.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20090876|ref|NP_616951.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20090876|ref|NP_616951.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20090876|ref|NP_616951.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20090876|ref|NP_616951.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family DDE_Tnp_1 PF01609.21 gi|20090877|ref|NP_616952.1| - 0.0076 15.9 0.0 0.0094 15.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain AA_permease PF00324.21 gi|20090878|ref|NP_616953.1| - 2.5e-06 26.3 1.9 3.7e-05 22.5 1.9 2.0 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|20090878|ref|NP_616953.1| - 0.00012 21.1 3.9 0.00064 18.7 3.9 1.8 1 1 0 1 1 1 1 Amino acid permease Yip1 PF04893.17 gi|20090878|ref|NP_616953.1| - 0.0016 18.2 0.5 0.0016 18.2 0.5 1.9 2 0 0 2 2 2 1 Yip1 domain Fer4_NifH PF00142.18 gi|20090880|ref|NP_616955.1| - 1.7e-87 293.3 0.0 2.5e-87 292.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Oxidored_nitro PF00148.19 gi|20090880|ref|NP_616955.1| - 1.3e-67 228.3 0.0 1.6e-67 228.0 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase CbiA PF01656.23 gi|20090880|ref|NP_616955.1| - 1.7e-13 50.7 0.0 3.7e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20090880|ref|NP_616955.1| - 1e-08 35.3 0.0 7e-08 32.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|20090880|ref|NP_616955.1| - 3.7e-08 33.1 0.0 0.00012 21.6 0.0 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|20090880|ref|NP_616955.1| - 8.7e-08 31.7 0.0 5.4e-07 29.1 0.1 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|20090880|ref|NP_616955.1| - 0.0027 17.6 0.0 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|20090880|ref|NP_616955.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|20090880|ref|NP_616955.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|20090880|ref|NP_616955.1| - 0.15 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Oxidored_nitro PF00148.19 gi|20090881|ref|NP_616956.1| - 3e-42 144.8 0.0 3.5e-42 144.6 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Ion_trans PF00520.31 gi|20090882|ref|NP_616957.1| - 3.5e-30 105.0 17.6 4.6e-30 104.6 17.6 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|20090882|ref|NP_616957.1| - 9.2e-15 54.4 7.1 9.2e-15 54.4 7.1 2.6 2 1 1 3 3 3 1 Ion channel PKD_channel PF08016.12 gi|20090882|ref|NP_616957.1| - 0.0059 15.3 8.3 0.055 12.1 1.8 2.2 1 1 1 2 2 2 2 Polycystin cation channel DZR PF12773.7 gi|20090882|ref|NP_616957.1| - 0.0089 16.0 1.7 0.014 15.4 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|20090882|ref|NP_616957.1| - 0.012 15.3 2.9 0.02 14.6 2.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-CCHC_3 PF13917.6 gi|20090882|ref|NP_616957.1| - 1.2 9.1 6.8 0.63 10.1 0.5 2.2 1 1 1 2 2 2 0 Zinc knuckle pXO2-72 PF17443.2 gi|20090884|ref|NP_616959.1| - 0.084 13.1 0.9 0.24 11.7 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein pXO2-72 Sec8_exocyst PF04048.14 gi|20090885|ref|NP_616960.1| - 0.046 13.6 1.4 0.063 13.2 1.4 1.2 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain HTH_24 PF13412.6 gi|20090886|ref|NP_616961.1| - 0.014 14.9 0.3 0.041 13.5 0.3 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Vps36-NZF-N PF16988.5 gi|20090887|ref|NP_616962.1| - 0.16 11.4 3.0 0.25 10.8 3.0 1.2 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Cys_rich_CPCC PF14206.6 gi|20090887|ref|NP_616962.1| - 0.2 11.5 3.1 0.45 10.4 3.1 1.5 1 1 0 1 1 1 0 Cysteine-rich CPCC zf-piccolo PF05715.13 gi|20090887|ref|NP_616962.1| - 3.4 7.9 8.5 10 6.4 1.0 2.4 1 1 1 2 2 2 0 Piccolo Zn-finger RHS_repeat PF05593.14 gi|20090890|ref|NP_616965.1| - 9.2e-05 22.9 2.4 2.9 8.5 0.0 3.8 3 0 0 3 3 3 3 RHS Repeat Imm64 PF15600.6 gi|20090891|ref|NP_616966.1| - 2.2e-98 327.7 5.5 2.5e-98 327.5 5.5 1.0 1 0 0 1 1 1 1 Immunity protein 64 MATH PF00917.26 gi|20090891|ref|NP_616966.1| - 0.025 14.7 0.1 0.046 13.9 0.1 1.5 1 0 0 1 1 1 0 MATH domain RHS_repeat PF05593.14 gi|20090892|ref|NP_616967.1| - 1.3e-42 143.8 70.6 3.3e-07 30.7 0.8 17.2 14 3 3 17 17 17 10 RHS Repeat Colicin_D PF11429.8 gi|20090892|ref|NP_616967.1| - 2.9e-26 91.7 2.2 2.6e-25 88.7 2.2 2.8 1 0 0 1 1 1 1 Colicin D DUF2341 PF10102.9 gi|20090892|ref|NP_616967.1| - 3.1e-24 85.3 1.3 3.1e-24 85.3 1.3 4.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) TcdB_toxin_midN PF12256.8 gi|20090892|ref|NP_616967.1| - 4.7e-20 71.7 28.3 2e-17 63.1 3.0 7.3 4 2 2 7 7 7 3 Insecticide toxin TcdB middle/N-terminal region SpvB PF03534.13 gi|20090892|ref|NP_616967.1| - 2e-13 50.2 7.8 2.4e-11 43.4 7.8 3.0 1 1 0 1 1 1 1 Salmonella virulence plasmid 65kDa B protein VCBS PF13517.6 gi|20090892|ref|NP_616967.1| - 1.7e-09 38.1 42.3 6.3e-06 26.7 7.3 7.8 8 2 2 10 10 10 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|20090892|ref|NP_616967.1| - 0.00026 21.0 49.1 0.12 12.5 1.4 7.1 6 0 0 6 6 6 5 FG-GAP repeat DUF2283 PF10049.9 gi|20090892|ref|NP_616967.1| - 3.1 8.1 9.7 14 6.0 0.1 5.9 6 0 0 6 6 6 0 Protein of unknown function (DUF2283) EF-hand_5 PF13202.6 gi|20090892|ref|NP_616967.1| - 7.1 6.3 16.6 26 4.5 0.2 6.1 5 0 0 5 5 5 0 EF hand tRNA_deacylase PF04414.12 gi|20090893|ref|NP_616968.1| - 4.5e-70 235.3 0.0 5.6e-70 235.0 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF3147 PF11345.8 gi|20090894|ref|NP_616969.1| - 1.1e-42 144.8 4.8 1.3e-42 144.7 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) ABC_membrane_3 PF13748.6 gi|20090896|ref|NP_616971.1| - 0.033 13.4 0.4 0.044 13.0 0.4 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region DUF2207 PF09972.9 gi|20090896|ref|NP_616971.1| - 0.33 9.7 0.7 0.35 9.6 0.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MatE PF01554.18 gi|20090897|ref|NP_616972.1| - 3.7e-54 182.7 42.1 9.9e-31 106.6 11.3 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|20090897|ref|NP_616972.1| - 3.9e-11 43.2 8.7 3.9e-11 43.2 8.7 4.1 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|20090897|ref|NP_616972.1| - 0.00039 19.9 29.3 0.045 13.1 0.3 3.4 1 1 2 3 3 3 3 Polysaccharide biosynthesis protein MarR PF01047.22 gi|20090898|ref|NP_616973.1| - 5.7e-15 55.0 0.0 2.3e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|20090898|ref|NP_616973.1| - 1.8e-13 50.2 0.0 2.7e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20090898|ref|NP_616973.1| - 2.5e-08 34.3 0.2 4.7e-08 33.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|20090898|ref|NP_616973.1| - 1e-05 24.9 0.0 1.7e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20090898|ref|NP_616973.1| - 2.3e-05 24.2 0.4 8.4e-05 22.4 0.2 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|20090898|ref|NP_616973.1| - 2.3e-05 24.5 0.1 3.9e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|20090898|ref|NP_616973.1| - 4.7e-05 24.0 0.0 7.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal HTH_11 PF08279.12 gi|20090898|ref|NP_616973.1| - 5.1e-05 23.1 0.1 8.4e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|20090898|ref|NP_616973.1| - 6.9e-05 23.0 0.2 0.00011 22.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|20090898|ref|NP_616973.1| - 7.8e-05 22.6 0.0 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|20090898|ref|NP_616973.1| - 0.00042 20.2 0.0 0.00082 19.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|20090898|ref|NP_616973.1| - 0.00093 19.0 0.1 0.002 18.0 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|20090898|ref|NP_616973.1| - 0.0037 17.0 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|20090898|ref|NP_616973.1| - 0.0038 16.8 0.1 0.0075 15.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|20090898|ref|NP_616973.1| - 0.0043 16.9 0.1 0.0057 16.5 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit B-block_TFIIIC PF04182.12 gi|20090898|ref|NP_616973.1| - 0.0058 16.8 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_54 PF18607.1 gi|20090898|ref|NP_616973.1| - 0.0064 16.5 0.2 0.011 15.8 0.2 1.3 1 0 0 1 1 1 1 ParA helix turn helix domain UPF0175 PF03683.13 gi|20090898|ref|NP_616973.1| - 0.013 15.2 0.2 1.5 8.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) DUF3116 PF11313.8 gi|20090898|ref|NP_616973.1| - 0.017 15.0 0.1 0.027 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) PadR PF03551.14 gi|20090898|ref|NP_616973.1| - 0.018 15.0 0.6 0.032 14.2 0.6 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PepSY_2 PF13670.6 gi|20090898|ref|NP_616973.1| - 0.025 14.6 0.2 0.038 14.0 0.2 1.2 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain HTH_23 PF13384.6 gi|20090898|ref|NP_616973.1| - 0.038 13.8 0.2 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain RNA_pol_Rpc34 PF05158.12 gi|20090898|ref|NP_616973.1| - 0.043 13.2 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Mga PF05043.13 gi|20090898|ref|NP_616973.1| - 0.054 14.1 0.0 0.13 12.9 0.0 1.6 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_DeoR PF08220.12 gi|20090898|ref|NP_616973.1| - 0.067 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain ANT PF03374.14 gi|20090898|ref|NP_616973.1| - 0.08 13.3 0.1 0.23 11.8 0.1 1.8 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_20 PF12840.7 gi|20090898|ref|NP_616973.1| - 0.097 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|20090898|ref|NP_616973.1| - 0.12 12.7 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF2157 PF09925.9 gi|20090899|ref|NP_616974.1| - 8e-41 139.3 1.0 8e-41 139.3 1.0 3.7 2 2 1 3 3 3 2 Predicted membrane protein (DUF2157) GDYXXLXY PF14345.6 gi|20090900|ref|NP_616975.1| - 5.3e-36 123.7 0.0 6.2e-36 123.5 0.0 1.0 1 0 0 1 1 1 1 GDYXXLXY protein MarR PF01047.22 gi|20090902|ref|NP_616977.1| - 5.9e-11 42.1 0.1 1.1e-10 41.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20090902|ref|NP_616977.1| - 2.1e-08 34.5 0.0 3.4e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|20090902|ref|NP_616977.1| - 1.2e-07 31.5 0.0 2e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|20090902|ref|NP_616977.1| - 0.00019 21.2 0.7 0.0012 18.6 0.0 2.2 1 1 1 2 2 2 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|20090902|ref|NP_616977.1| - 0.0035 17.3 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|20090902|ref|NP_616977.1| - 0.0057 16.8 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain FtsK_gamma PF09397.10 gi|20090902|ref|NP_616977.1| - 0.02 14.6 0.5 0.039 13.8 0.1 1.7 2 0 0 2 2 2 0 Ftsk gamma domain PadR PF03551.14 gi|20090902|ref|NP_616977.1| - 0.034 14.1 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|20090902|ref|NP_616977.1| - 0.052 13.4 0.2 0.21 11.5 0.1 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|20090902|ref|NP_616977.1| - 0.064 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MMPL PF03176.15 gi|20090903|ref|NP_616978.1| - 8.8e-65 218.8 8.3 1.8e-33 115.9 0.5 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|20090903|ref|NP_616978.1| - 2.2e-11 43.8 22.5 5.4e-07 29.6 4.0 3.3 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|20090903|ref|NP_616978.1| - 4.8e-10 39.1 26.3 2.9e-09 36.6 8.7 3.1 2 1 1 3 3 3 2 Protein export membrane protein ACR_tran PF00873.19 gi|20090903|ref|NP_616978.1| - 2.4e-06 25.6 8.5 2.4e-06 25.6 8.5 3.3 3 1 1 4 4 4 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|20090903|ref|NP_616978.1| - 3.1e-06 25.6 23.2 5.8e-05 21.4 4.5 2.9 3 0 0 3 3 3 2 Patched family TrmB PF01978.19 gi|20090904|ref|NP_616979.1| - 1.1e-22 79.7 0.0 1.4e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|20090904|ref|NP_616979.1| - 2.2e-06 27.3 0.0 1.1e-05 25.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20090904|ref|NP_616979.1| - 0.0011 18.8 0.0 0.0025 17.7 0.0 1.6 1 1 1 2 2 2 1 MarR family MarR PF01047.22 gi|20090904|ref|NP_616979.1| - 0.076 12.9 0.0 0.21 11.5 0.0 1.7 1 1 1 2 2 2 0 MarR family Rrf2 PF02082.20 gi|20090904|ref|NP_616979.1| - 0.087 13.2 0.0 0.17 12.2 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_6 PF01418.17 gi|20090904|ref|NP_616979.1| - 0.16 11.9 0.0 0.5 10.4 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain, rpiR family Aldo_ket_red PF00248.21 gi|20090905|ref|NP_616980.1| - 2.4e-37 128.8 0.1 9.2e-36 123.5 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|20090905|ref|NP_616980.1| - 2.5e-11 44.0 4.8 5.7e-11 42.8 4.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20090905|ref|NP_616980.1| - 8.2e-10 38.7 4.9 1.8e-09 37.6 4.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20090905|ref|NP_616980.1| - 9.8e-09 35.4 0.5 0.00053 20.2 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20090905|ref|NP_616980.1| - 3.5e-06 27.3 4.1 8.2e-06 26.2 4.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20090905|ref|NP_616980.1| - 0.0001 22.8 8.7 0.00052 20.6 8.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20090905|ref|NP_616980.1| - 0.00018 21.6 7.9 0.00064 19.8 8.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20090905|ref|NP_616980.1| - 0.00091 20.1 5.3 0.037 15.0 0.7 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|20090905|ref|NP_616980.1| - 0.019 14.8 15.3 0.048 13.5 6.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20090905|ref|NP_616980.1| - 0.02 15.0 8.3 0.52 10.5 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20090905|ref|NP_616980.1| - 0.033 14.3 3.2 0.033 14.3 3.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20090905|ref|NP_616980.1| - 0.065 14.1 4.3 2.9 8.8 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|20090905|ref|NP_616980.1| - 0.33 10.7 7.7 0.33 10.8 0.9 2.4 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|20090905|ref|NP_616980.1| - 1.3 9.3 15.5 0.23 11.6 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20090905|ref|NP_616980.1| - 8.7 7.5 14.2 0.75 10.9 4.9 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain CMD PF02627.20 gi|20090906|ref|NP_616981.1| - 9.8e-10 38.4 0.0 1.3e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PPR PF01535.20 gi|20090906|ref|NP_616981.1| - 0.026 14.7 0.1 3.9 7.9 0.0 2.5 2 0 0 2 2 2 0 PPR repeat DUF1661 PF07877.11 gi|20090907|ref|NP_616982.1| - 0.019 14.6 0.2 0.044 13.5 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1661) DUF2058 PF09831.9 gi|20090907|ref|NP_616982.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2058) CCDC-167 PF15188.6 gi|20090910|ref|NP_616985.1| - 0.048 14.0 0.4 0.1 13.0 0.4 1.5 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 CBP_BcsF PF11120.8 gi|20090910|ref|NP_616985.1| - 0.09 12.9 1.2 0.18 11.9 1.2 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF Met_10 PF02475.16 gi|20090911|ref|NP_616986.1| - 2.9e-64 216.5 0.0 3.9e-64 216.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|20090911|ref|NP_616986.1| - 2.9e-09 36.7 0.0 6.6e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_15 PF09445.10 gi|20090911|ref|NP_616986.1| - 2.8e-07 30.3 0.0 4.5e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|20090911|ref|NP_616986.1| - 1.6e-05 24.6 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|20090911|ref|NP_616986.1| - 0.00023 21.1 0.0 0.00044 20.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090911|ref|NP_616986.1| - 0.00026 21.6 0.0 0.00053 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|20090911|ref|NP_616986.1| - 0.00038 19.7 0.0 0.00052 19.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase GidB PF02527.15 gi|20090911|ref|NP_616986.1| - 0.0083 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PrmA PF06325.13 gi|20090911|ref|NP_616986.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF5066 PF16728.5 gi|20090911|ref|NP_616986.1| - 0.019 14.3 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5066) Cons_hypoth95 PF03602.15 gi|20090911|ref|NP_616986.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DNA_methylase PF00145.17 gi|20090911|ref|NP_616986.1| - 0.091 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase tRNA_U5-meth_tr PF05958.11 gi|20090911|ref|NP_616986.1| - 0.14 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase AAA PF00004.29 gi|20090913|ref|NP_616988.1| - 0.019 15.4 0.0 0.051 14.0 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Response_reg PF00072.24 gi|20090915|ref|NP_616990.1| - 0.00051 20.2 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAAR_motif PF05488.13 gi|20090916|ref|NP_616991.1| - 4.2e-15 55.7 6.9 3.7e-09 36.6 1.0 2.1 1 1 1 2 2 2 2 PAAR motif DUF4150 PF13665.6 gi|20090916|ref|NP_616991.1| - 0.00045 20.3 0.3 0.00086 19.4 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4150) Transposase_20 PF02371.16 gi|20090917|ref|NP_616992.1| - 7.2e-25 87.1 0.0 1e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family HPS6 PF15702.5 gi|20090917|ref|NP_616992.1| - 0.062 11.3 0.0 0.065 11.2 0.0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 6 protein DEDD_Tnp_IS110 PF01548.17 gi|20090918|ref|NP_616993.1| - 2.5e-10 40.5 0.9 4.9e-10 39.5 0.4 1.7 2 0 0 2 2 2 1 Transposase SeleniumBinding PF11524.8 gi|20090918|ref|NP_616993.1| - 0.093 13.2 0.2 0.45 11.0 0.1 2.0 2 0 0 2 2 2 0 Selenium binding protein YhfT PF10797.9 gi|20090918|ref|NP_616993.1| - 0.16 11.0 0.1 0.21 10.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function AAT PF03417.16 gi|20090919|ref|NP_616994.1| - 2.6e-82 275.9 0.0 4.3e-82 275.2 0.0 1.4 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Clr5 PF14420.6 gi|20090919|ref|NP_616994.1| - 0.04 14.1 0.0 7.6 6.8 0.0 2.5 2 0 0 2 2 2 0 Clr5 domain DDE_Tnp_1 PF01609.21 gi|20090920|ref|NP_616995.1| - 3e-09 36.8 0.5 1.5e-08 34.6 0.5 2.2 1 1 0 1 1 1 1 Transposase DDE domain Peptidase_M4_C PF02868.15 gi|20090921|ref|NP_616996.1| - 2e-51 174.2 0.0 5.8e-51 172.7 0.0 1.8 2 0 0 2 2 2 1 Thermolysin metallopeptidase, alpha-helical domain P_proprotein PF01483.20 gi|20090921|ref|NP_616996.1| - 2.1e-40 136.6 0.1 3.8e-20 71.7 0.0 2.6 2 0 0 2 2 2 2 Proprotein convertase P-domain Peptidase_M4 PF01447.18 gi|20090921|ref|NP_616996.1| - 3.6e-27 95.7 0.4 5.5e-27 95.0 0.4 1.3 1 0 0 1 1 1 1 Thermolysin metallopeptidase, catalytic domain FTP PF07504.13 gi|20090921|ref|NP_616996.1| - 1.6e-07 31.0 0.3 3.7e-07 29.9 0.3 1.6 1 0 0 1 1 1 1 Fungalysin/Thermolysin Propeptide Motif DUF4901 PF16244.5 gi|20090921|ref|NP_616996.1| - 0.00018 21.0 0.0 0.00052 19.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4901) PepSY PF03413.19 gi|20090921|ref|NP_616996.1| - 0.0019 18.7 0.0 0.0089 16.6 0.0 2.3 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain Peptidase_M36 PF02128.15 gi|20090921|ref|NP_616996.1| - 0.0021 17.3 0.1 0.055 12.6 0.0 2.0 2 0 0 2 2 2 1 Fungalysin metallopeptidase (M36) YycI PF09648.10 gi|20090921|ref|NP_616996.1| - 0.0094 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 YycH protein Cupin_2 PF07883.11 gi|20090922|ref|NP_616997.1| - 4.9e-13 48.6 0.0 1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Cupin domain sCache_2 PF17200.4 gi|20090922|ref|NP_616997.1| - 2e-12 47.3 0.0 3.3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|20090922|ref|NP_616997.1| - 4.9e-09 35.8 0.0 6.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Cache domain Cupin_1 PF00190.22 gi|20090922|ref|NP_616997.1| - 2.2e-06 27.3 0.0 4.7e-06 26.3 0.0 1.5 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|20090922|ref|NP_616997.1| - 3.8e-06 26.8 0.0 7.9e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|20090922|ref|NP_616997.1| - 0.00031 20.6 0.0 0.00078 19.4 0.0 1.7 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|20090922|ref|NP_616997.1| - 0.0038 16.9 0.0 0.011 15.4 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|20090922|ref|NP_616997.1| - 0.0046 16.7 0.0 0.0075 16.0 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Exo_endo_phos PF03372.23 gi|20090923|ref|NP_616998.1| - 3.4e-21 75.8 0.0 4.4e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|20090923|ref|NP_616998.1| - 0.0011 18.8 0.0 0.0086 15.9 0.0 2.2 2 1 0 2 2 2 1 Endonuclease-reverse transcriptase Potyvirid-P3 PF13608.6 gi|20090923|ref|NP_616998.1| - 0.21 10.6 0.1 0.28 10.1 0.1 1.1 1 0 0 1 1 1 0 Protein P3 of Potyviral polyprotein Flavodoxin_5 PF12724.7 gi|20090924|ref|NP_616999.1| - 2.7e-31 108.8 0.0 3.5e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|20090924|ref|NP_616999.1| - 5.5e-06 26.6 0.0 8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|20090924|ref|NP_616999.1| - 0.00097 18.9 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain SBP_bac_5 PF00496.22 gi|20090924|ref|NP_616999.1| - 0.05 12.6 0.0 0.059 12.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle IstB_IS21 PF01695.17 gi|20090925|ref|NP_617000.1| - 6.2e-66 221.5 0.0 1.1e-65 220.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20090925|ref|NP_617000.1| - 3.8e-05 23.6 0.0 7.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20090925|ref|NP_617000.1| - 8.9e-05 22.9 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|20090925|ref|NP_617000.1| - 0.00031 21.0 0.2 0.0043 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20090925|ref|NP_617000.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein RNA_helicase PF00910.22 gi|20090925|ref|NP_617000.1| - 0.0021 18.4 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RuvB_N PF05496.12 gi|20090925|ref|NP_617000.1| - 0.0035 17.1 0.0 0.0074 16.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|20090925|ref|NP_617000.1| - 0.017 15.4 0.2 6.6 7.0 0.0 3.0 1 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|20090925|ref|NP_617000.1| - 0.02 15.3 0.0 0.097 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20090925|ref|NP_617000.1| - 0.021 14.7 0.0 0.062 13.2 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|20090925|ref|NP_617000.1| - 0.026 15.0 1.2 0.26 11.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20090925|ref|NP_617000.1| - 0.043 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|20090925|ref|NP_617000.1| - 0.052 13.0 0.0 0.41 10.1 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|20090925|ref|NP_617000.1| - 0.1 13.1 0.7 0.27 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20090925|ref|NP_617000.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|20090925|ref|NP_617000.1| - 0.25 11.1 1.2 36 4.0 0.0 3.0 1 1 2 3 3 3 0 AAA domain rve PF00665.26 gi|20090926|ref|NP_617001.1| - 6.9e-25 87.6 0.0 1.3e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20090926|ref|NP_617001.1| - 5.1e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20090926|ref|NP_617001.1| - 6.5e-05 22.9 0.1 0.0011 19.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|20090926|ref|NP_617001.1| - 0.0027 16.7 0.0 0.0053 15.8 0.0 1.4 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20090926|ref|NP_617001.1| - 0.0035 17.1 0.1 0.0088 15.8 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20090926|ref|NP_617001.1| - 0.0071 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|20090926|ref|NP_617001.1| - 0.013 15.2 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|20090926|ref|NP_617001.1| - 0.016 15.0 0.3 0.1 12.4 0.0 2.4 2 1 1 3 3 3 0 Homeodomain-like domain HTH_5 PF01022.20 gi|20090926|ref|NP_617001.1| - 0.017 15.0 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20090926|ref|NP_617001.1| - 0.029 14.3 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|20090926|ref|NP_617001.1| - 0.034 13.9 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_1 PF13411.6 gi|20090926|ref|NP_617001.1| - 0.052 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_7 PF02796.15 gi|20090926|ref|NP_617001.1| - 0.056 13.5 0.2 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF746 PF05344.11 gi|20090926|ref|NP_617001.1| - 0.057 13.3 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) MetOD2 PF18548.1 gi|20090926|ref|NP_617001.1| - 0.061 13.4 0.0 5.8 7.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 HTH_36 PF13730.6 gi|20090926|ref|NP_617001.1| - 0.073 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|20090926|ref|NP_617001.1| - 0.11 12.6 0.2 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 gi|20090926|ref|NP_617001.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20090926|ref|NP_617001.1| - 0.13 11.9 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) MEDS PF14417.6 gi|20090927|ref|NP_617002.1| - 5.6e-48 162.8 0.1 1.5e-47 161.4 0.1 1.8 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.12 gi|20090927|ref|NP_617002.1| - 6.1e-34 116.0 2.6 2.6e-33 113.9 0.8 2.9 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.12 gi|20090927|ref|NP_617002.1| - 1.5e-24 86.1 0.0 7.5e-21 74.2 0.1 3.2 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|20090927|ref|NP_617002.1| - 5e-20 71.8 0.0 3e-16 59.6 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|20090927|ref|NP_617002.1| - 2.1e-15 56.9 0.0 4.6e-09 36.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|20090927|ref|NP_617002.1| - 2.1e-11 43.8 1.8 7.7e-05 22.7 0.0 3.6 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|20090927|ref|NP_617002.1| - 8.4e-11 42.4 0.2 2.8e-10 40.7 0.2 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20090927|ref|NP_617002.1| - 2.1e-07 30.8 0.0 4.7e-05 23.3 0.0 3.2 3 0 0 3 3 3 1 PAS domain HWE_HK PF07536.14 gi|20090927|ref|NP_617002.1| - 6.4e-05 23.6 1.5 0.00011 22.9 0.2 2.0 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20090927|ref|NP_617002.1| - 0.00037 20.5 0.0 0.001 19.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|20090927|ref|NP_617002.1| - 0.03 14.0 0.1 0.13 12.0 0.1 2.1 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain sCache_3_3 PF17202.4 gi|20090927|ref|NP_617002.1| - 0.074 13.5 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 Single cache domain 3 BLYB PF05289.11 gi|20090927|ref|NP_617002.1| - 0.12 12.6 1.9 0.3 11.3 1.9 1.7 1 0 0 1 1 1 0 Borrelia hemolysin accessory protein OmpH PF03938.14 gi|20090927|ref|NP_617002.1| - 0.5 10.7 6.9 0.14 12.5 1.1 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF4795 PF16043.5 gi|20090927|ref|NP_617002.1| - 4.2 6.9 9.4 5.8 6.5 1.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) MULE PF10551.9 gi|20090928|ref|NP_617003.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20090928|ref|NP_617003.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20090928|ref|NP_617003.1| - 0.022 14.8 0.1 0.063 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20090928|ref|NP_617003.1| - 0.028 14.3 0.6 0.059 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20090928|ref|NP_617003.1| - 0.04 13.8 1.1 0.093 12.6 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20090928|ref|NP_617003.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20090928|ref|NP_617003.1| - 0.064 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20090928|ref|NP_617003.1| - 0.07 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20090928|ref|NP_617003.1| - 0.17 12.0 3.4 0.39 10.8 3.4 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20090928|ref|NP_617003.1| - 0.25 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20090928|ref|NP_617003.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger CobA_CobO_BtuR PF02572.15 gi|20090929|ref|NP_617004.1| - 5e-56 189.7 0.0 5.7e-56 189.5 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.17 gi|20090929|ref|NP_617004.1| - 0.0048 16.6 0.1 0.55 9.9 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|20090929|ref|NP_617004.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.6 1 1 1 2 2 2 0 AAA domain Cation_efflux PF01545.21 gi|20090930|ref|NP_617005.1| - 7.4e-42 143.3 18.8 1.7e-41 142.2 18.8 1.6 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.17 gi|20090930|ref|NP_617005.1| - 1.8e-19 69.9 0.0 3.3e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ZT_dimer PF16916.5 gi|20090930|ref|NP_617005.1| - 4.2e-14 52.4 1.1 4.2e-14 52.4 1.1 1.9 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter CdvA PF18822.1 gi|20090930|ref|NP_617005.1| - 0.027 14.3 0.3 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DUF2627 PF11118.8 gi|20090930|ref|NP_617005.1| - 2.2 8.9 7.5 14 6.3 0.4 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF2627) TPR_12 PF13424.6 gi|20090931|ref|NP_617006.1| - 5.6e-10 39.4 0.4 2.1e-09 37.5 0.2 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090931|ref|NP_617006.1| - 2.2e-05 24.0 0.3 0.00069 19.3 0.6 2.4 2 0 0 2 2 2 1 TPR repeat TPR_2 PF07719.17 gi|20090931|ref|NP_617006.1| - 2.9e-05 23.8 2.1 0.0098 15.9 0.8 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090931|ref|NP_617006.1| - 0.00015 21.4 3.6 0.098 12.5 0.8 3.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090931|ref|NP_617006.1| - 0.00056 19.9 6.1 0.65 10.4 1.3 3.5 3 1 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090931|ref|NP_617006.1| - 0.012 15.8 1.4 0.059 13.6 0.7 2.2 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.9 gi|20090931|ref|NP_617006.1| - 0.017 14.8 0.5 0.039 13.7 0.5 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat-like domain ArnB_C PF18677.1 gi|20090931|ref|NP_617006.1| - 0.032 14.3 0.5 0.065 13.3 0.3 1.6 2 0 0 2 2 1 0 Archaellum regulatory network B, C-terminal domain YfdX PF10938.8 gi|20090931|ref|NP_617006.1| - 0.039 13.9 0.3 0.058 13.3 0.3 1.6 1 1 0 1 1 1 0 YfdX protein TPR_19 PF14559.6 gi|20090931|ref|NP_617006.1| - 0.041 14.4 0.5 1 10.0 0.2 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20090931|ref|NP_617006.1| - 0.048 13.0 0.0 0.082 12.3 0.0 1.3 2 0 0 2 2 2 0 MalT-like TPR region TPR_14 PF13428.6 gi|20090931|ref|NP_617006.1| - 0.065 14.1 0.2 32 5.7 0.0 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat MIT PF04212.18 gi|20090931|ref|NP_617006.1| - 0.076 13.1 2.6 4 7.6 0.0 2.6 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain SRP68 PF16969.5 gi|20090931|ref|NP_617006.1| - 0.093 11.7 0.2 0.14 11.1 0.2 1.3 1 1 0 1 1 1 0 RNA-binding signal recognition particle 68 FAT PF02259.23 gi|20090931|ref|NP_617006.1| - 0.11 11.7 0.8 1 8.5 0.4 2.3 1 1 1 2 2 2 0 FAT domain TPR_10 PF13374.6 gi|20090931|ref|NP_617006.1| - 0.12 12.3 1.0 16 5.5 0.0 3.2 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090931|ref|NP_617006.1| - 0.17 12.6 0.1 1.8 9.3 0.1 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat PTS_IIA PF02255.16 gi|20090931|ref|NP_617006.1| - 0.18 11.9 2.2 0.31 11.1 1.2 1.9 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit MULE PF10551.9 gi|20090932|ref|NP_617007.1| - 0.0004 20.7 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20090932|ref|NP_617007.1| - 0.069 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20090932|ref|NP_617007.1| - 0.16 12.5 1.7 0.51 10.9 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20090932|ref|NP_617007.1| - 0.19 11.5 1.3 0.58 9.9 1.3 1.8 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20090932|ref|NP_617007.1| - 0.41 10.6 3.0 2 8.4 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger TPR_12 PF13424.6 gi|20090933|ref|NP_617008.1| - 2.9e-35 120.4 13.7 0.00037 20.7 0.0 11.1 7 3 1 9 9 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090933|ref|NP_617008.1| - 6.9e-27 91.4 41.4 0.00011 22.1 0.1 12.5 12 2 2 14 14 11 9 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090933|ref|NP_617008.1| - 5.3e-26 89.3 34.3 0.00019 21.1 0.1 12.5 13 1 1 14 14 14 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090933|ref|NP_617008.1| - 1.1e-25 87.6 33.6 0.0027 17.7 0.0 13.1 13 1 0 13 13 12 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090933|ref|NP_617008.1| - 1.1e-23 81.5 12.3 0.00088 19.1 0.0 11.2 11 0 0 11 11 10 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090933|ref|NP_617008.1| - 2.1e-21 75.1 8.9 0.00049 19.9 0.0 9.5 9 0 0 9 9 9 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090933|ref|NP_617008.1| - 9.7e-18 63.4 9.2 1.1 10.3 0.0 12.2 8 4 3 11 11 11 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20090933|ref|NP_617008.1| - 1.6e-13 50.0 3.9 3.2 8.3 0.0 11.1 10 4 1 11 11 10 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090933|ref|NP_617008.1| - 4.1e-12 46.5 6.4 4.8 7.9 0.0 9.7 8 2 1 9 9 9 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090933|ref|NP_617008.1| - 5.7e-12 46.0 10.6 0.12 12.9 0.1 10.2 7 3 5 12 12 10 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20090933|ref|NP_617008.1| - 1.1e-08 35.1 22.0 0.013 16.1 0.0 9.6 9 2 1 10 10 8 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20090933|ref|NP_617008.1| - 4.6e-05 23.0 0.0 0.64 9.3 0.0 3.8 3 0 0 3 3 3 1 MalT-like TPR region TOM20_plant PF06552.12 gi|20090933|ref|NP_617008.1| - 0.00029 20.6 6.6 0.24 11.1 0.4 4.4 2 1 2 4 4 4 2 Plant specific mitochondrial import receptor subunit TOM20 PPR PF01535.20 gi|20090933|ref|NP_617008.1| - 0.00092 19.3 12.7 19 5.8 0.0 8.2 9 1 1 10 10 8 0 PPR repeat DUF2225 PF09986.9 gi|20090933|ref|NP_617008.1| - 0.0012 18.6 17.2 0.11 12.2 0.7 5.0 2 1 2 5 5 5 2 Uncharacterized protein conserved in bacteria (DUF2225) TPR_9 PF13371.6 gi|20090933|ref|NP_617008.1| - 0.0013 18.8 0.0 14 5.9 0.0 4.9 3 1 1 4 4 4 0 Tetratricopeptide repeat NatB_MDM20 PF09797.9 gi|20090933|ref|NP_617008.1| - 0.008 15.2 0.7 0.1 11.5 0.2 2.7 2 0 0 2 2 2 1 N-acetyltransferase B complex (NatB) non catalytic subunit BTAD PF03704.17 gi|20090933|ref|NP_617008.1| - 0.021 15.2 1.4 2.6 8.5 0.0 4.5 4 1 1 5 5 5 0 Bacterial transcriptional activator domain RPN7 PF10602.9 gi|20090933|ref|NP_617008.1| - 0.028 14.1 11.6 0.14 11.9 0.1 6.0 4 2 2 7 7 7 0 26S proteasome subunit RPN7 TPR_4 PF07721.14 gi|20090933|ref|NP_617008.1| - 0.03 14.9 0.3 4.3 8.2 0.1 3.5 3 0 0 3 3 2 0 Tetratricopeptide repeat YfdX PF10938.8 gi|20090933|ref|NP_617008.1| - 0.038 13.9 1.5 67 3.4 0.0 4.3 4 0 0 4 4 4 0 YfdX protein Sel1 PF08238.12 gi|20090933|ref|NP_617008.1| - 0.042 14.5 14.6 13 6.6 0.4 5.8 6 0 0 6 6 5 0 Sel1 repeat TPR_11 PF13414.6 gi|20090933|ref|NP_617008.1| - 0.085 12.6 37.8 0.67 9.7 0.1 11.4 10 3 2 12 12 12 0 TPR repeat Mad3_BUB1_I PF08311.12 gi|20090933|ref|NP_617008.1| - 0.18 11.8 12.9 1.5 8.9 0.8 5.3 5 1 0 5 5 4 0 Mad3/BUB1 homology region 1 ANAPC3 PF12895.7 gi|20090933|ref|NP_617008.1| - 0.26 11.6 6.7 0.91 9.8 0.1 4.9 5 1 1 6 6 4 0 Anaphase-promoting complex, cyclosome, subunit 3 Foie-gras_1 PF11817.8 gi|20090933|ref|NP_617008.1| - 0.28 10.8 2.2 1.6 8.3 0.0 3.0 4 0 0 4 4 4 0 Foie gras liver health family 1 Clat_adaptor_s PF01217.20 gi|20090933|ref|NP_617008.1| - 0.58 10.1 4.3 1.6 8.7 0.3 2.7 3 0 0 3 3 2 0 Clathrin adaptor complex small chain PPR_2 PF13041.6 gi|20090933|ref|NP_617008.1| - 0.69 10.1 2.7 63 3.9 0.0 4.4 4 0 0 4 4 4 0 PPR repeat family TPR_21 PF09976.9 gi|20090933|ref|NP_617008.1| - 0.95 9.1 3.7 22 4.7 0.0 4.1 5 0 0 5 5 4 0 Tetratricopeptide repeat-like domain DUF4386 PF14329.6 gi|20090934|ref|NP_617009.1| - 1.2e-15 58.0 22.6 1.8e-10 41.0 14.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4386) DUF2569 PF10754.9 gi|20090934|ref|NP_617009.1| - 0.69 10.3 9.7 0.2 12.1 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) IBV_3C PF03620.13 gi|20090934|ref|NP_617009.1| - 4.7 7.8 6.4 1.2 9.6 0.9 2.4 2 1 1 3 3 3 0 IBV 3C protein IstB_IS21 PF01695.17 gi|20090935|ref|NP_617010.1| - 2e-06 27.6 0.2 2.5e-06 27.3 0.2 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein adh_short PF00106.25 gi|20090936|ref|NP_617011.1| - 4.7e-48 163.2 0.0 5.8e-48 163.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|20090936|ref|NP_617011.1| - 5.8e-31 107.9 0.0 7e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|20090936|ref|NP_617011.1| - 4.7e-11 42.9 0.0 6.6e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|20090936|ref|NP_617011.1| - 1.8e-06 27.6 0.0 2.4e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) THF_DHG_CYH_C PF02882.19 gi|20090936|ref|NP_617011.1| - 0.00019 20.8 0.1 0.00032 20.0 0.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 gi|20090936|ref|NP_617011.1| - 0.0013 18.2 0.1 0.0064 16.0 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|20090936|ref|NP_617011.1| - 0.012 14.7 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|20090936|ref|NP_617011.1| - 0.036 13.2 0.1 0.066 12.3 0.0 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain Pyr_redox_2 PF07992.14 gi|20090936|ref|NP_617011.1| - 0.2 10.8 0.0 0.38 9.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glug PF07581.12 gi|20090937|ref|NP_617012.1| - 0.096 13.1 5.8 1.6 9.3 2.5 2.5 2 0 0 2 2 2 0 The GLUG motif Phage_holin_2_3 PF16080.5 gi|20090937|ref|NP_617012.1| - 0.18 11.5 0.4 0.18 11.5 0.4 1.5 2 0 0 2 2 2 0 Bacteriophage holin family HP1 MccV PF17508.2 gi|20090937|ref|NP_617012.1| - 6.5 7.4 6.3 11 6.6 1.1 2.1 1 1 1 2 2 2 0 Microcin V bacteriocin PadR PF03551.14 gi|20090938|ref|NP_617013.1| - 1.2e-11 44.4 0.2 2.8e-11 43.2 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|20090938|ref|NP_617013.1| - 0.00012 22.1 0.1 0.0002 21.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|20090938|ref|NP_617013.1| - 0.0003 20.6 0.3 0.00088 19.1 0.1 2.0 2 1 0 2 2 2 1 HxlR-like helix-turn-helix AphA_like PF14557.6 gi|20090938|ref|NP_617013.1| - 0.0032 17.2 0.0 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator Replic_Relax PF13814.6 gi|20090938|ref|NP_617013.1| - 0.0045 17.1 0.0 0.0059 16.7 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation RTP PF02334.16 gi|20090938|ref|NP_617013.1| - 0.031 14.9 0.2 0.1 13.2 0.1 1.9 2 0 0 2 2 2 0 Replication terminator protein Fe_dep_repress PF01325.19 gi|20090938|ref|NP_617013.1| - 0.044 14.0 3.8 0.058 13.6 0.0 2.5 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain FUR PF01475.19 gi|20090938|ref|NP_617013.1| - 0.064 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|20090938|ref|NP_617013.1| - 0.076 12.9 0.1 0.23 11.4 0.1 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.9 gi|20090938|ref|NP_617013.1| - 0.1 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) N6-adenineMlase PF10237.9 gi|20090938|ref|NP_617013.1| - 0.13 12.0 0.1 1.1 9.0 0.0 2.1 2 1 0 2 2 2 0 Probable N6-adenine methyltransferase HTH_5 PF01022.20 gi|20090938|ref|NP_617013.1| - 0.13 12.1 0.0 25 4.8 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Helicase_C_2 PF13307.6 gi|20090941|ref|NP_617016.1| - 1e-18 68.1 0.0 2.3e-18 66.9 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.15 gi|20090941|ref|NP_617016.1| - 3.8e-09 36.8 1.7 2.7e-08 34.0 0.1 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_2 PF06733.15 gi|20090941|ref|NP_617016.1| - 1.2e-05 25.0 0.4 1.2e-05 25.0 0.4 2.1 2 1 0 2 2 2 1 DEAD_2 DEAD PF00270.29 gi|20090941|ref|NP_617016.1| - 0.0086 15.9 0.0 0.024 14.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase T2SSE PF00437.20 gi|20090941|ref|NP_617016.1| - 0.023 13.8 0.2 0.34 9.9 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein Imm12 PF15560.6 gi|20090941|ref|NP_617016.1| - 0.024 14.6 0.0 0.068 13.1 0.0 1.7 1 0 0 1 1 1 0 Immunity protein 12 DnaB_C PF03796.15 gi|20090941|ref|NP_617016.1| - 0.027 13.8 0.0 0.3 10.4 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA PF00004.29 gi|20090941|ref|NP_617016.1| - 0.055 13.9 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|20090941|ref|NP_617016.1| - 0.057 12.7 0.0 2.3 7.4 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin TPR_12 PF13424.6 gi|20090942|ref|NP_617017.1| - 1.7e-15 57.1 14.6 2.3e-05 24.6 3.5 6.9 3 1 4 7 7 7 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090942|ref|NP_617017.1| - 4.9e-08 32.5 19.1 0.43 10.8 0.8 7.5 9 1 0 9 9 8 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090942|ref|NP_617017.1| - 4.2e-07 29.6 10.6 0.0071 16.2 0.4 6.4 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090942|ref|NP_617017.1| - 1.4e-05 25.5 5.3 14 6.8 0.1 6.8 6 2 2 8 8 7 0 Tetratricopeptide repeat SNAP PF14938.6 gi|20090942|ref|NP_617017.1| - 9.9e-05 21.9 2.8 1.2 8.5 0.6 3.7 2 2 1 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_1 PF00515.28 gi|20090942|ref|NP_617017.1| - 0.00012 21.7 19.6 0.25 11.2 1.0 7.4 8 1 0 8 8 8 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090942|ref|NP_617017.1| - 0.00074 19.5 28.3 0.034 14.3 2.0 8.3 10 0 0 10 10 8 1 Tetratricopeptide repeat DUF5112 PF17139.4 gi|20090942|ref|NP_617017.1| - 0.0023 17.4 0.8 0.027 14.0 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF5112) RPN7 PF10602.9 gi|20090942|ref|NP_617017.1| - 0.0028 17.4 10.8 0.18 11.5 0.3 4.6 2 2 2 4 4 4 1 26S proteasome subunit RPN7 TPR_16 PF13432.6 gi|20090942|ref|NP_617017.1| - 0.0059 17.2 0.6 81 4.0 0.0 5.1 6 0 0 6 6 5 0 Tetratricopeptide repeat ArnB_C PF18677.1 gi|20090942|ref|NP_617017.1| - 0.0066 16.5 1.6 0.034 14.2 0.2 2.9 2 0 0 2 2 2 1 Archaellum regulatory network B, C-terminal domain TPR_21 PF09976.9 gi|20090942|ref|NP_617017.1| - 0.0075 16.0 3.1 0.44 10.2 0.1 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat-like domain DUF5113 PF17140.4 gi|20090942|ref|NP_617017.1| - 0.01 15.6 5.4 4.3 7.1 0.2 4.6 4 1 1 5 5 5 0 Domain of unknown function (DUF5113) ANAPC3 PF12895.7 gi|20090942|ref|NP_617017.1| - 0.02 15.1 9.2 4 7.7 0.2 5.2 5 2 2 7 7 7 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF4810 PF16068.5 gi|20090942|ref|NP_617017.1| - 0.054 14.0 2.2 6.8 7.3 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4810) TPR_19 PF14559.6 gi|20090942|ref|NP_617017.1| - 0.064 13.8 14.5 38 4.9 0.8 6.9 6 2 0 6 6 6 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20090942|ref|NP_617017.1| - 0.065 12.6 0.1 0.49 9.7 0.0 2.2 2 1 0 2 2 2 0 MalT-like TPR region TPR_17 PF13431.6 gi|20090942|ref|NP_617017.1| - 0.14 12.6 10.2 12 6.5 0.0 5.6 7 0 0 7 7 5 0 Tetratricopeptide repeat DUF384 PF04064.13 gi|20090942|ref|NP_617017.1| - 0.42 10.5 3.2 4.9 7.1 1.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF384) DUF2225 PF09986.9 gi|20090942|ref|NP_617017.1| - 1.4 8.5 11.3 4.8 6.8 1.3 2.8 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_11 PF13414.6 gi|20090942|ref|NP_617017.1| - 1.5 8.5 15.0 18 5.1 0.1 5.4 6 0 0 6 6 5 0 TPR repeat SHNi-TPR PF10516.9 gi|20090942|ref|NP_617017.1| - 1.6 8.3 7.3 10 5.7 0.0 3.8 4 0 0 4 4 4 0 SHNi-TPR SPO22 PF08631.10 gi|20090942|ref|NP_617017.1| - 3.8 6.9 13.2 3.1 7.2 0.5 3.6 1 1 2 3 3 3 0 Meiosis protein SPO22/ZIP4 like TPR_12 PF13424.6 gi|20090943|ref|NP_617018.1| - 3.9e-29 100.8 36.7 2.6e-06 27.6 0.9 11.1 8 4 2 10 10 9 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20090943|ref|NP_617018.1| - 4.9e-26 89.4 40.4 0.00014 21.6 0.0 12.7 13 1 0 13 13 11 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20090943|ref|NP_617018.1| - 4.1e-24 82.7 48.5 0.0064 16.5 0.0 14.0 14 1 1 15 15 13 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20090943|ref|NP_617018.1| - 7.8e-24 81.9 55.1 0.00067 19.7 0.2 14.5 15 0 0 15 15 14 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20090943|ref|NP_617018.1| - 9.4e-15 54.0 24.9 0.00056 19.7 0.0 11.9 12 0 0 12 12 12 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20090943|ref|NP_617018.1| - 6e-14 51.6 13.9 4.8 8.3 0.0 13.7 10 5 5 15 15 14 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20090943|ref|NP_617018.1| - 1.5e-13 49.7 27.5 1.5 9.0 0.0 13.7 13 3 0 13 13 13 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20090943|ref|NP_617018.1| - 7.6e-12 45.6 21.3 0.0016 18.9 0.7 11.3 10 2 3 13 13 10 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20090943|ref|NP_617018.1| - 1.2e-09 37.7 44.1 0.032 13.9 0.5 14.2 13 3 2 15 15 15 1 TPR repeat TPR_6 PF13174.6 gi|20090943|ref|NP_617018.1| - 2.2e-09 37.4 29.3 1.8 9.3 0.1 13.5 13 1 0 13 13 12 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20090943|ref|NP_617018.1| - 1e-08 35.7 19.3 0.52 11.0 0.1 10.6 7 6 2 9 9 8 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20090943|ref|NP_617018.1| - 2.6e-07 30.8 15.5 0.014 15.6 0.2 7.2 4 2 2 6 6 6 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_MalT PF17874.1 gi|20090943|ref|NP_617018.1| - 3.6e-06 26.6 0.4 1.6 8.0 0.0 5.4 5 2 0 6 6 6 1 MalT-like TPR region DUF2225 PF09986.9 gi|20090943|ref|NP_617018.1| - 5.4e-05 23.0 29.1 0.012 15.4 0.8 6.1 3 2 1 5 5 5 3 Uncharacterized protein conserved in bacteria (DUF2225) TOM20_plant PF06552.12 gi|20090943|ref|NP_617018.1| - 0.00039 20.2 12.8 0.022 14.5 0.4 6.3 3 2 5 9 9 9 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_9 PF13371.6 gi|20090943|ref|NP_617018.1| - 0.00051 20.1 0.0 4.2 7.6 0.0 5.2 4 1 1 5 5 5 1 Tetratricopeptide repeat YfdX PF10938.8 gi|20090943|ref|NP_617018.1| - 0.00058 19.8 7.1 3.6 7.5 0.5 4.7 4 0 0 4 4 4 2 YfdX protein TPR_17 PF13431.6 gi|20090943|ref|NP_617018.1| - 0.00085 19.5 31.3 2.9 8.5 0.0 12.7 14 4 3 17 17 12 1 Tetratricopeptide repeat Sel1 PF08238.12 gi|20090943|ref|NP_617018.1| - 0.038 14.7 14.8 12 6.7 0.3 6.0 6 0 0 6 6 5 0 Sel1 repeat PPR PF01535.20 gi|20090943|ref|NP_617018.1| - 0.048 13.9 8.8 26 5.4 0.1 6.6 6 0 0 6 6 6 0 PPR repeat HTH_Bact PF18768.1 gi|20090943|ref|NP_617018.1| - 0.085 12.4 1.0 29 4.4 0.0 4.0 2 1 1 3 3 3 0 Helix-turn-helix bacterial domain DUF3856 PF12968.7 gi|20090943|ref|NP_617018.1| - 0.13 12.3 16.3 1.6 8.8 0.7 4.9 2 1 1 4 4 4 0 Domain of Unknown Function (DUF3856) Wzy_C_2 PF11846.8 gi|20090943|ref|NP_617018.1| - 0.21 11.5 1.0 45 3.9 0.0 4.6 5 1 2 7 7 7 0 Virulence factor membrane-bound polymerase, C-terminal BTAD PF03704.17 gi|20090943|ref|NP_617018.1| - 0.35 11.3 8.5 0.092 13.2 0.5 4.0 5 1 0 5 5 4 0 Bacterial transcriptional activator domain DUF627 PF04781.12 gi|20090943|ref|NP_617018.1| - 0.64 10.1 9.2 3.5 7.7 0.2 5.6 5 3 0 5 5 5 0 Protein of unknown function (DUF627) HMG_box PF00505.19 gi|20090943|ref|NP_617018.1| - 0.65 10.5 0.0 0.65 10.5 0.0 4.6 5 1 0 5 5 2 0 HMG (high mobility group) box MIT PF04212.18 gi|20090943|ref|NP_617018.1| - 1.2 9.2 35.4 2.4 8.3 0.3 9.0 9 0 0 9 9 8 0 MIT (microtubule interacting and transport) domain TAP_C PF03943.13 gi|20090943|ref|NP_617018.1| - 1.5 8.6 4.4 16 5.2 0.1 3.3 4 0 0 4 4 2 0 TAP C-terminal domain TPR_21 PF09976.9 gi|20090943|ref|NP_617018.1| - 1.7 8.3 20.2 0.12 12.1 0.3 6.1 7 0 0 7 7 6 0 Tetratricopeptide repeat-like domain RVT_1 PF00078.27 gi|20090946|ref|NP_617021.1| - 3.2e-23 82.4 0.2 8.2e-23 81.1 0.2 1.6 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) Methylase_S PF01420.19 gi|20090947|ref|NP_617022.1| - 5.8e-22 78.7 3.7 2.5e-10 40.9 1.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Trypan_glycop PF00913.19 gi|20090947|ref|NP_617022.1| - 0.077 12.2 0.4 0.12 11.7 0.4 1.2 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) MULE PF10551.9 gi|20090948|ref|NP_617023.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20090948|ref|NP_617023.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20090948|ref|NP_617023.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20090948|ref|NP_617023.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20090948|ref|NP_617023.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20090948|ref|NP_617023.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20090948|ref|NP_617023.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20090948|ref|NP_617023.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20090948|ref|NP_617023.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20090948|ref|NP_617023.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20090948|ref|NP_617023.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger Methylase_S PF01420.19 gi|20090949|ref|NP_617024.1| - 2.1e-10 41.1 0.2 2.3e-10 40.9 0.2 1.0 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain ResIII PF04851.15 gi|20090950|ref|NP_617025.1| - 3.1e-34 118.4 0.5 3.4e-33 115.1 0.1 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.10 gi|20090950|ref|NP_617025.1| - 3.4e-18 66.4 0.1 9.2e-17 61.7 0.0 2.9 2 0 0 2 2 2 1 EcoEI R protein C-terminal SWI2_SNF2 PF18766.1 gi|20090950|ref|NP_617025.1| - 8.8e-17 61.5 0.1 1.8e-16 60.5 0.1 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|20090950|ref|NP_617025.1| - 4.3e-11 43.1 0.6 2.8e-09 37.2 0.1 3.1 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|20090950|ref|NP_617025.1| - 1.5e-05 25.3 0.0 6.5e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|20090950|ref|NP_617025.1| - 0.00015 21.6 0.0 0.00033 20.5 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase HSDR_N_2 PF13588.6 gi|20090950|ref|NP_617025.1| - 0.0027 17.7 0.1 0.015 15.3 0.1 2.2 1 1 1 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF2075 PF09848.9 gi|20090950|ref|NP_617025.1| - 0.0034 16.7 0.0 0.0093 15.2 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|20090950|ref|NP_617025.1| - 0.023 15.0 0.0 0.052 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Ribosomal_L38e PF01781.18 gi|20090950|ref|NP_617025.1| - 0.027 14.6 0.6 0.087 12.9 0.2 2.1 2 0 0 2 2 1 0 Ribosomal L38e protein family PhoH PF02562.16 gi|20090950|ref|NP_617025.1| - 0.043 13.2 0.2 0.34 10.3 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.17 gi|20090950|ref|NP_617025.1| - 0.079 12.7 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54_N PF02881.19 gi|20090950|ref|NP_617025.1| - 0.084 13.1 0.2 0.67 10.2 0.0 2.7 3 0 0 3 3 1 0 SRP54-type protein, helical bundle domain TrwB_AAD_bind PF10412.9 gi|20090950|ref|NP_617025.1| - 0.1 11.5 0.2 3.8 6.3 0.0 2.7 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain LysE PF01810.18 gi|20090952|ref|NP_617027.1| - 3.1e-21 75.7 6.7 4.1e-21 75.3 6.7 1.1 1 0 0 1 1 1 1 LysE type translocator TRAM_LAG1_CLN8 PF03798.16 gi|20090952|ref|NP_617027.1| - 0.08 12.7 4.2 0.12 12.2 4.2 1.2 1 0 0 1 1 1 0 TLC domain Phage_holin_3_6 PF07332.11 gi|20090952|ref|NP_617027.1| - 4.3 7.4 7.9 6.9 6.8 0.6 2.8 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane PF01061.24 gi|20090953|ref|NP_617028.1| - 2.5e-42 144.7 20.0 3.4e-42 144.2 20.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20090953|ref|NP_617028.1| - 6.4e-15 55.1 28.2 6.4e-15 55.1 28.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20090953|ref|NP_617028.1| - 1.7e-06 27.6 16.7 2.5e-06 27.0 16.7 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|20090954|ref|NP_617029.1| - 7.7e-35 120.4 0.0 1.4e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20090954|ref|NP_617029.1| - 6.1e-10 39.4 0.2 2.5e-05 24.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20090954|ref|NP_617029.1| - 5.4e-06 26.4 0.2 0.047 13.4 0.1 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|20090954|ref|NP_617029.1| - 6.4e-05 23.5 0.4 9.1e-05 23.0 0.4 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090954|ref|NP_617029.1| - 0.00014 21.5 0.2 0.00025 20.7 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|20090954|ref|NP_617029.1| - 0.0002 21.3 0.0 0.00029 20.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain gp45-slide_C PF09116.10 gi|20090954|ref|NP_617029.1| - 0.002 18.2 0.0 0.0045 17.0 0.0 1.6 1 0 0 1 1 1 1 gp45 sliding clamp, C terminal SMC_N PF02463.19 gi|20090954|ref|NP_617029.1| - 0.011 15.2 0.1 0.062 12.7 0.1 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.7 gi|20090954|ref|NP_617029.1| - 0.011 14.6 0.1 0.056 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain RsgA_GTPase PF03193.16 gi|20090954|ref|NP_617029.1| - 0.019 14.9 0.2 0.078 12.9 0.1 1.9 1 1 1 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|20090954|ref|NP_617029.1| - 0.028 14.7 0.3 0.13 12.6 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20090954|ref|NP_617029.1| - 0.033 13.9 0.0 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|20090954|ref|NP_617029.1| - 0.05 14.0 0.3 0.64 10.4 0.3 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CBM_26 PF16824.5 gi|20090954|ref|NP_617029.1| - 0.056 13.6 0.0 0.096 12.8 0.0 1.3 1 0 0 1 1 1 0 C-terminal carbohydrate-binding module MutS_V PF00488.21 gi|20090954|ref|NP_617029.1| - 0.079 13.0 0.2 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 MutS domain V dNK PF01712.19 gi|20090954|ref|NP_617029.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Deoxynucleoside kinase DUF5442 PF17514.2 gi|20090954|ref|NP_617029.1| - 0.086 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5442) SRP54 PF00448.22 gi|20090954|ref|NP_617029.1| - 0.13 11.8 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|20090954|ref|NP_617029.1| - 0.28 11.4 1.1 1.2 9.4 0.2 2.4 2 1 1 3 3 3 0 AAA domain Peptidase_M48 PF01435.18 gi|20090955|ref|NP_617030.1| - 1.5e-39 135.8 0.0 2.1e-39 135.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|20090955|ref|NP_617030.1| - 3.6e-07 29.7 1.2 1.1e-06 28.1 0.0 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 Sugarporin_N PF11471.8 gi|20090955|ref|NP_617030.1| - 0.12 12.4 0.2 0.45 10.5 0.0 2.1 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension DUF4157 PF13699.6 gi|20090955|ref|NP_617030.1| - 0.17 12.1 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) VKOR PF07884.14 gi|20090955|ref|NP_617030.1| - 0.17 12.0 6.2 2.6 8.2 1.4 2.2 2 0 0 2 2 2 0 Vitamin K epoxide reductase family DUF3953 PF13129.6 gi|20090955|ref|NP_617030.1| - 0.18 11.6 0.2 0.18 11.6 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3953) DUF1129 PF06570.11 gi|20090955|ref|NP_617030.1| - 0.24 10.8 6.6 0.15 11.5 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) YdjM PF04307.14 gi|20090957|ref|NP_617032.1| - 2.1e-15 56.4 4.3 2.7e-15 56.1 4.3 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase TMEMspv1-c74-12 PF11044.8 gi|20090957|ref|NP_617032.1| - 0.0086 16.0 3.1 0.04 13.9 0.1 2.6 2 0 0 2 2 2 1 Plectrovirus spv1-c74 ORF 12 transmembrane protein DUF2273 PF10031.9 gi|20090957|ref|NP_617032.1| - 0.25 11.4 0.4 0.25 11.4 0.4 3.6 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) MacB_PCD PF12704.7 gi|20090958|ref|NP_617033.1| - 0.0019 18.6 0.0 0.0023 18.3 0.0 1.2 1 0 0 1 1 1 1 MacB-like periplasmic core domain AAA_28 PF13521.6 gi|20090958|ref|NP_617033.1| - 0.06 13.6 0.0 0.11 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain N6_Mtase PF02384.16 gi|20090959|ref|NP_617034.1| - 6.5e-70 235.9 0.0 9.2e-70 235.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|20090959|ref|NP_617034.1| - 3.6e-14 53.6 0.0 3.1e-13 50.5 0.0 2.5 1 1 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|20090959|ref|NP_617034.1| - 0.00021 21.1 0.3 0.0048 16.6 0.3 2.7 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|20090959|ref|NP_617034.1| - 0.034 13.7 0.1 0.55 9.8 0.0 2.5 3 0 0 3 3 3 0 Methyltransferase small domain Gly-zipper_OmpA PF13436.6 gi|20090960|ref|NP_617035.1| - 0.067 13.0 1.1 0.099 12.4 1.1 1.1 1 0 0 1 1 1 0 Glycine-zipper domain McrBC PF10117.9 gi|20090961|ref|NP_617036.1| - 5.7e-90 301.7 6.3 7e-90 301.4 6.3 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.14 gi|20090962|ref|NP_617037.1| - 3.6e-16 59.4 0.0 1e-14 54.7 0.0 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20090962|ref|NP_617037.1| - 1.6e-06 28.6 0.5 2.3e-05 24.9 0.5 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|20090962|ref|NP_617037.1| - 0.001 18.7 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20090962|ref|NP_617037.1| - 0.0016 18.8 0.0 0.0056 17.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|20090962|ref|NP_617037.1| - 0.0036 17.1 0.0 0.0083 15.9 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|20090962|ref|NP_617037.1| - 0.045 14.1 0.2 0.35 11.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20090962|ref|NP_617037.1| - 0.096 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain Methylase_S PF01420.19 gi|20090963|ref|NP_617038.1| - 3.9e-27 95.5 0.1 3.5e-18 66.4 0.3 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain BHD_3 PF10405.9 gi|20090963|ref|NP_617038.1| - 0.0088 16.4 0.0 28 5.2 0.0 4.0 3 1 0 3 3 3 1 Rad4 beta-hairpin domain 3 DUF501 PF04417.12 gi|20090963|ref|NP_617038.1| - 0.039 13.8 0.8 0.29 10.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF501) Heme_oxygenase PF01126.20 gi|20090963|ref|NP_617038.1| - 0.3 10.8 1.3 0.33 10.7 0.2 1.6 2 0 0 2 2 2 0 Heme oxygenase HATPase_c_4 PF13749.6 gi|20090964|ref|NP_617039.1| - 4.5e-20 71.6 0.0 1.2e-19 70.2 0.0 1.7 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|20090964|ref|NP_617039.1| - 2.6e-16 60.0 0.3 7.8e-16 58.5 0.3 1.8 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_11 PF08279.12 gi|20090964|ref|NP_617039.1| - 5.4e-09 35.9 0.3 2.7e-08 33.6 0.1 2.3 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.6 gi|20090964|ref|NP_617039.1| - 9.2e-09 34.7 0.3 1.1e-07 31.2 0.3 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DDRGK PF09756.9 gi|20090964|ref|NP_617039.1| - 4.2e-08 33.0 1.2 3.1e-07 30.2 0.3 2.2 2 0 0 2 2 2 1 DDRGK domain HTH_DeoR PF08220.12 gi|20090964|ref|NP_617039.1| - 5.5e-05 22.8 0.0 0.0004 20.1 0.0 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|20090964|ref|NP_617039.1| - 0.00034 20.6 0.3 0.0012 18.8 0.2 2.0 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain AbiEi_4 PF13338.6 gi|20090964|ref|NP_617039.1| - 0.0012 19.0 0.0 0.0026 17.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|20090964|ref|NP_617039.1| - 0.0013 18.6 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|20090964|ref|NP_617039.1| - 0.0014 18.9 0.0 0.0035 17.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|20090964|ref|NP_617039.1| - 0.0015 18.4 0.1 0.0037 17.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|20090964|ref|NP_617039.1| - 0.0034 17.3 0.0 0.011 15.7 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|20090964|ref|NP_617039.1| - 0.0068 16.4 0.0 0.018 15.1 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain FeoC PF09012.10 gi|20090964|ref|NP_617039.1| - 0.0087 16.1 0.3 0.077 13.1 0.0 2.4 3 0 0 3 3 2 1 FeoC like transcriptional regulator HTH_AsnC-type PF13404.6 gi|20090964|ref|NP_617039.1| - 0.012 15.4 0.0 0.052 13.4 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FaeA PF04703.12 gi|20090964|ref|NP_617039.1| - 0.014 15.8 0.1 0.055 13.9 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein TFIIE_alpha PF02002.17 gi|20090964|ref|NP_617039.1| - 0.034 14.0 0.0 0.094 12.6 0.0 1.7 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.19 gi|20090964|ref|NP_617039.1| - 0.035 14.3 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|20090964|ref|NP_617039.1| - 0.065 13.2 0.3 0.2 11.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|20090964|ref|NP_617039.1| - 0.094 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain EcoEI_R_C PF08463.10 gi|20090965|ref|NP_617040.1| - 4.5e-51 173.3 0.7 4.5e-51 173.3 0.7 3.0 3 0 0 3 3 3 1 EcoEI R protein C-terminal ResIII PF04851.15 gi|20090965|ref|NP_617040.1| - 5.2e-42 143.7 0.7 1.4e-41 142.3 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|20090965|ref|NP_617040.1| - 2.7e-20 73.0 1.1 4.5e-20 72.3 0.0 1.9 2 0 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|20090965|ref|NP_617040.1| - 1.1e-09 38.5 2.4 3.1e-06 27.3 0.0 3.3 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.29 gi|20090965|ref|NP_617040.1| - 7.3e-09 35.6 0.0 3.7e-08 33.3 0.0 2.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|20090965|ref|NP_617040.1| - 0.00064 20.0 0.3 0.0042 17.4 0.0 2.6 3 1 1 4 4 4 1 Helicase conserved C-terminal domain DUF3298 PF11738.8 gi|20090967|ref|NP_617042.1| - 0.037 15.1 1.3 0.76 10.8 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3298) Lipocalin_4 PF13648.6 gi|20090972|ref|NP_617047.1| - 0.15 13.0 1.9 0.19 12.7 1.9 1.2 1 0 0 1 1 1 0 Lipocalin-like domain DUF86 PF01934.17 gi|20090973|ref|NP_617048.1| - 9.7e-23 80.3 0.0 1.1e-22 80.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|20090974|ref|NP_617049.1| - 1.6e-12 47.6 0.0 1.9e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20090974|ref|NP_617049.1| - 5.3e-12 45.7 0.0 6.6e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|20090974|ref|NP_617049.1| - 0.036 14.3 0.0 0.038 14.2 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm GnsAB_toxin PF08178.11 gi|20090975|ref|NP_617050.1| - 0.083 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system Fic PF02661.18 gi|20090976|ref|NP_617051.1| - 1.4e-25 90.0 0.2 3.8e-25 88.6 0.1 1.8 2 0 0 2 2 2 1 Fic/DOC family HicB_lk_antitox PF15919.5 gi|20090977|ref|NP_617052.1| - 4.6e-05 23.5 0.0 5.2e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|20090978|ref|NP_617053.1| - 1.2e-23 82.9 0.1 1.3e-23 82.8 0.1 1.0 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|20090979|ref|NP_617054.1| - 3.8e-14 52.9 0.1 3.9e-14 52.8 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|20090979|ref|NP_617054.1| - 0.043 13.8 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) Methyltransf_25 PF13649.6 gi|20090980|ref|NP_617055.1| - 8.4e-21 74.5 0.2 1.1e-20 74.1 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090980|ref|NP_617055.1| - 8.7e-18 64.8 0.1 1.1e-17 64.4 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090980|ref|NP_617055.1| - 1e-17 64.3 0.1 1.3e-17 64.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090980|ref|NP_617055.1| - 2.5e-16 60.2 0.2 3.4e-16 59.8 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|20090980|ref|NP_617055.1| - 3e-14 53.2 0.0 4.4e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|20090980|ref|NP_617055.1| - 4.9e-13 49.2 0.0 6.2e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20090980|ref|NP_617055.1| - 3.1e-10 39.8 0.0 3.8e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|20090980|ref|NP_617055.1| - 1.8e-09 37.3 0.0 2.3e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20090980|ref|NP_617055.1| - 4.5e-08 32.8 0.0 5.7e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|20090980|ref|NP_617055.1| - 1.2e-07 31.3 0.0 1.4e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|20090980|ref|NP_617055.1| - 2.5e-06 27.2 0.0 3.1e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|20090980|ref|NP_617055.1| - 4.7e-05 23.1 0.1 6e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|20090980|ref|NP_617055.1| - 0.00011 21.7 0.0 0.00014 21.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|20090980|ref|NP_617055.1| - 0.00028 20.5 0.2 0.00045 19.8 0.2 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|20090980|ref|NP_617055.1| - 0.0011 18.5 0.3 0.009 15.5 0.2 2.0 1 1 1 2 2 2 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|20090980|ref|NP_617055.1| - 0.0045 16.9 0.2 0.0066 16.4 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|20090980|ref|NP_617055.1| - 0.018 14.0 0.0 0.023 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|20090980|ref|NP_617055.1| - 0.025 14.5 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|20090980|ref|NP_617055.1| - 0.032 13.5 0.1 0.043 13.1 0.1 1.1 1 0 0 1 1 1 0 O-methyltransferase domain PCMT PF01135.19 gi|20090980|ref|NP_617055.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AdoMet_MTase PF07757.13 gi|20090980|ref|NP_617055.1| - 0.15 12.4 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase PulA_N1 PF17999.1 gi|20090981|ref|NP_617056.1| - 0.67 10.7 6.4 0.14 12.9 1.3 2.6 3 0 0 3 3 3 0 Pullulanase N1-terminal domain AAA_15 PF13175.6 gi|20090982|ref|NP_617057.1| - 2.6e-44 152.4 16.3 2.6e-44 152.4 16.3 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|20090982|ref|NP_617057.1| - 1.8e-20 74.0 11.4 4.5e-19 69.4 11.4 2.8 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20090982|ref|NP_617057.1| - 1.1e-13 52.1 6.5 1.1e-13 52.1 6.5 2.1 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.8 gi|20090982|ref|NP_617057.1| - 1e-12 48.0 0.8 2.6e-07 30.2 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.19 gi|20090982|ref|NP_617057.1| - 2.6e-09 36.9 4.9 1.4e-08 34.5 1.0 2.9 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|20090982|ref|NP_617057.1| - 0.00068 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090982|ref|NP_617057.1| - 0.00087 19.0 0.0 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain G-alpha PF00503.20 gi|20090982|ref|NP_617057.1| - 0.0081 15.4 1.2 0.0081 15.4 1.2 1.9 2 1 0 2 2 2 1 G-protein alpha subunit ABC_tran PF00005.27 gi|20090982|ref|NP_617057.1| - 0.062 13.8 0.2 0.22 12.0 0.1 2.0 1 1 0 1 1 1 0 ABC transporter RuvC_1 PF18516.1 gi|20090982|ref|NP_617057.1| - 0.074 12.2 1.2 2.9 7.0 0.3 2.3 2 0 0 2 2 2 0 RuvC nuclease domain AAA_18 PF13238.6 gi|20090982|ref|NP_617057.1| - 0.095 13.3 0.1 0.91 10.1 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|20090982|ref|NP_617057.1| - 0.15 12.4 0.0 0.47 10.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF3073 PF11273.8 gi|20090982|ref|NP_617057.1| - 0.21 12.3 0.5 0.68 10.7 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) UvrD-helicase PF00580.21 gi|20090983|ref|NP_617058.1| - 2.2e-31 109.5 0.1 1.8e-29 103.3 0.1 2.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|20090983|ref|NP_617058.1| - 1.6e-17 64.2 0.0 7.3e-17 62.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|20090983|ref|NP_617058.1| - 2.3e-12 47.0 0.7 8.2e-11 41.9 0.0 2.8 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|20090983|ref|NP_617058.1| - 3.4e-08 33.2 0.0 3.1e-07 30.1 0.0 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|20090983|ref|NP_617058.1| - 3.8e-07 30.1 0.0 0.0037 17.0 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|20090983|ref|NP_617058.1| - 0.0002 21.2 0.0 0.0066 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arginosuc_synth PF00764.19 gi|20090985|ref|NP_617060.1| - 1e-182 607.7 0.2 1.2e-182 607.5 0.2 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|20090985|ref|NP_617060.1| - 0.0003 20.3 0.1 0.0014 18.1 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|20090985|ref|NP_617060.1| - 0.0046 16.1 0.0 0.0076 15.4 0.0 1.5 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|20090985|ref|NP_617060.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.16 gi|20090985|ref|NP_617060.1| - 0.029 13.2 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase CPSase_L_D2 PF02786.17 gi|20090986|ref|NP_617061.1| - 4.8e-105 349.7 1.0 1e-70 237.5 0.3 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|20090986|ref|NP_617061.1| - 5.8e-44 149.3 0.2 1.8e-43 147.8 0.2 1.9 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|20090986|ref|NP_617061.1| - 9.3e-23 80.2 0.3 4.4e-20 71.7 0.0 3.9 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.22 gi|20090986|ref|NP_617061.1| - 4e-16 59.1 0.2 3.5e-07 29.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|20090986|ref|NP_617061.1| - 6.9e-16 58.4 0.0 4.6e-07 29.6 0.0 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|20090986|ref|NP_617061.1| - 2.8e-14 53.0 0.0 2.9e-06 27.0 0.0 3.0 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|20090986|ref|NP_617061.1| - 1.2e-08 35.2 0.4 0.003 17.6 0.2 2.7 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|20090986|ref|NP_617061.1| - 4.4e-07 29.9 0.1 0.021 14.6 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|20090986|ref|NP_617061.1| - 0.00033 20.2 0.0 0.071 12.6 0.0 3.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|20090986|ref|NP_617061.1| - 0.0039 16.8 0.1 4.3 6.8 0.0 3.2 4 0 0 4 4 4 2 ATP-grasp domain HTH_23 PF13384.6 gi|20090986|ref|NP_617061.1| - 0.014 15.1 0.0 1.6 8.6 0.0 3.0 1 1 1 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 gi|20090986|ref|NP_617061.1| - 0.059 13.7 0.2 15 6.0 0.0 3.3 3 0 0 3 3 3 0 Transcriptional regulator B12-binding PF02310.19 gi|20090986|ref|NP_617061.1| - 0.07 13.2 0.0 3.4 7.7 0.0 3.0 3 0 0 3 3 2 0 B12 binding domain Epimerase PF01370.21 gi|20090986|ref|NP_617061.1| - 0.074 12.5 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family HTH_19 PF12844.7 gi|20090986|ref|NP_617061.1| - 0.081 13.0 0.2 0.52 10.4 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain TIR_2 PF13676.6 gi|20090986|ref|NP_617061.1| - 0.099 13.3 0.1 4.2 8.0 0.0 3.4 4 1 0 4 4 3 0 TIR domain CPSase_sm_chain PF00988.22 gi|20090987|ref|NP_617062.1| - 1.4e-48 163.9 0.0 2.2e-48 163.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|20090987|ref|NP_617062.1| - 2.6e-41 141.5 0.0 3.8e-41 141.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|20090987|ref|NP_617062.1| - 6.3e-07 29.4 0.1 0.00077 19.3 0.1 2.4 1 1 0 1 1 1 1 Peptidase C26 ABC_tran PF00005.27 gi|20090988|ref|NP_617063.1| - 4.3e-33 114.7 0.0 7.5e-33 114.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter CBS PF00571.28 gi|20090988|ref|NP_617063.1| - 5e-14 52.5 0.2 3.8e-06 27.3 0.0 2.9 2 0 0 2 2 2 2 CBS domain AAA_21 PF13304.6 gi|20090988|ref|NP_617063.1| - 3.6e-05 23.7 0.4 0.066 13.0 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 gi|20090988|ref|NP_617063.1| - 0.00013 21.0 0.4 0.59 8.9 0.1 3.0 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|20090988|ref|NP_617063.1| - 0.00079 19.9 0.1 0.0017 18.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20090988|ref|NP_617063.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20090988|ref|NP_617063.1| - 0.0014 18.6 0.1 0.0025 17.7 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|20090988|ref|NP_617063.1| - 0.0021 18.6 0.0 0.0043 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20090988|ref|NP_617063.1| - 0.0044 17.3 0.1 0.015 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|20090988|ref|NP_617063.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|20090988|ref|NP_617063.1| - 0.039 12.7 0.0 0.061 12.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_33 PF13671.6 gi|20090988|ref|NP_617063.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|20090988|ref|NP_617063.1| - 0.14 12.4 1.0 0.72 10.1 1.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|20090988|ref|NP_617063.1| - 0.16 12.1 0.0 0.29 11.2 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|20090988|ref|NP_617063.1| - 0.16 12.5 0.0 0.36 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|20090989|ref|NP_617064.1| - 1.2e-26 93.5 7.8 1.2e-26 93.5 7.8 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OpuAC PF04069.12 gi|20090990|ref|NP_617065.1| - 2.8e-68 230.3 2.2 3.3e-68 230.1 2.2 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1 PF09084.11 gi|20090990|ref|NP_617065.1| - 0.068 13.1 0.0 0.16 11.9 0.0 1.6 2 0 0 2 2 2 0 NMT1/THI5 like DUF1205 PF06722.12 gi|20090990|ref|NP_617065.1| - 0.67 10.1 2.6 1.7 8.8 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1205) Peripla_BP_2 PF01497.18 gi|20090991|ref|NP_617066.1| - 3.6e-34 118.4 0.0 4.6e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.6 gi|20090991|ref|NP_617066.1| - 0.001 18.7 0.0 0.0031 17.1 0.0 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain FecCD PF01032.18 gi|20090992|ref|NP_617067.1| - 8.7e-89 297.6 35.2 1.1e-88 297.3 35.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20090992|ref|NP_617067.1| - 6.1e-08 32.5 18.4 6.1e-08 32.5 18.4 1.7 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|20090993|ref|NP_617068.1| - 1.6e-29 103.2 0.3 2.7e-29 102.5 0.1 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|20090993|ref|NP_617068.1| - 1.1e-13 51.6 1.4 2.3e-06 27.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20090993|ref|NP_617068.1| - 3.1e-07 30.1 0.7 9.2e-06 25.2 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20090993|ref|NP_617068.1| - 4e-07 30.1 0.6 0.00099 18.9 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|20090993|ref|NP_617068.1| - 1.6e-06 28.8 0.1 2e-06 28.4 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20090993|ref|NP_617068.1| - 0.0012 18.5 0.1 0.0025 17.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|20090993|ref|NP_617068.1| - 0.0015 17.4 0.5 0.064 12.0 0.1 2.8 2 2 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|20090993|ref|NP_617068.1| - 0.0053 17.2 0.0 0.0066 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20090993|ref|NP_617068.1| - 0.0084 16.4 0.1 0.016 15.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|20090993|ref|NP_617068.1| - 0.027 14.1 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain HSM3_N PF18795.1 gi|20090993|ref|NP_617068.1| - 0.051 13.0 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain MutS_V PF00488.21 gi|20090993|ref|NP_617068.1| - 0.06 13.4 0.1 0.16 12.0 0.0 1.7 2 0 0 2 2 2 0 MutS domain V AAA_30 PF13604.6 gi|20090993|ref|NP_617068.1| - 0.064 13.0 0.2 0.82 9.4 0.2 2.2 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|20090993|ref|NP_617068.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|20090993|ref|NP_617068.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|20090993|ref|NP_617068.1| - 0.13 12.2 0.1 1.9 8.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|20090993|ref|NP_617068.1| - 0.21 11.9 0.6 0.54 10.6 0.6 1.7 1 1 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.12 gi|20090994|ref|NP_617069.1| - 5.5e-28 97.5 0.0 8.4e-28 96.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090994|ref|NP_617069.1| - 1e-25 90.3 0.0 1.5e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090994|ref|NP_617069.1| - 2.2e-22 79.6 0.0 2.9e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|20090994|ref|NP_617069.1| - 4e-20 72.2 0.0 5.4e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090994|ref|NP_617069.1| - 3.6e-16 59.4 0.0 5.5e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090994|ref|NP_617069.1| - 1.8e-15 57.5 0.0 2.6e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20090994|ref|NP_617069.1| - 5.3e-06 26.1 0.0 8.4e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20090994|ref|NP_617069.1| - 8.6e-06 25.3 0.0 1.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|20090994|ref|NP_617069.1| - 2.2e-05 24.2 0.0 3.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|20090994|ref|NP_617069.1| - 9.8e-05 22.0 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|20090994|ref|NP_617069.1| - 0.00051 19.4 0.0 0.00075 18.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain GidB PF02527.15 gi|20090994|ref|NP_617069.1| - 0.0011 18.3 0.0 0.0028 17.0 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|20090994|ref|NP_617069.1| - 0.0025 16.9 0.0 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|20090994|ref|NP_617069.1| - 0.0028 17.1 0.0 0.004 16.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.12 gi|20090994|ref|NP_617069.1| - 0.0062 15.7 0.0 0.0098 15.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_18 PF12847.7 gi|20090994|ref|NP_617069.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|20090994|ref|NP_617069.1| - 0.011 15.4 0.0 0.028 14.2 0.0 1.6 2 0 0 2 2 2 0 Lysine methyltransferase PCMT PF01135.19 gi|20090994|ref|NP_617069.1| - 0.018 14.8 0.0 0.038 13.7 0.0 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Mur_ligase PF01225.25 gi|20090994|ref|NP_617069.1| - 0.02 15.2 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_32 PF13679.6 gi|20090994|ref|NP_617069.1| - 0.084 12.9 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20090995|ref|NP_617070.1| - 5.7e-27 94.2 0.0 9.9e-27 93.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090995|ref|NP_617070.1| - 7.3e-24 84.3 0.0 1.6e-23 83.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090995|ref|NP_617070.1| - 2.3e-22 79.4 0.0 4.2e-22 78.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20090995|ref|NP_617070.1| - 2.1e-20 73.2 0.0 3e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090995|ref|NP_617070.1| - 3.1e-16 59.9 0.0 6.3e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090995|ref|NP_617070.1| - 6e-16 58.5 0.0 9.6e-16 57.8 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|20090995|ref|NP_617070.1| - 3.5e-07 30.0 0.0 5.3e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|20090995|ref|NP_617070.1| - 5.8e-07 28.7 0.0 8.9e-06 24.8 0.0 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|20090995|ref|NP_617070.1| - 5.8e-06 25.9 0.0 1.3e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|20090995|ref|NP_617070.1| - 2.2e-05 24.1 0.0 3.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DREV PF05219.12 gi|20090995|ref|NP_617070.1| - 3.4e-05 23.1 0.0 5.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.6 gi|20090995|ref|NP_617070.1| - 6.5e-05 23.0 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20090995|ref|NP_617070.1| - 0.0001 21.7 0.0 0.0002 20.7 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|20090995|ref|NP_617070.1| - 0.00033 20.5 0.0 0.00062 19.6 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|20090995|ref|NP_617070.1| - 0.00059 19.0 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TPMT PF05724.11 gi|20090995|ref|NP_617070.1| - 0.00064 19.4 0.0 0.0033 17.1 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_2 PF00891.18 gi|20090995|ref|NP_617070.1| - 0.0017 17.7 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain TehB PF03848.14 gi|20090995|ref|NP_617070.1| - 0.0018 17.7 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.18 gi|20090995|ref|NP_617070.1| - 0.0018 17.8 0.0 0.72 9.3 0.0 2.5 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain AdoMet_MTase PF07757.13 gi|20090995|ref|NP_617070.1| - 0.0024 18.2 0.0 0.0047 17.2 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase FtsJ PF01728.19 gi|20090995|ref|NP_617070.1| - 0.0036 17.4 0.0 0.0075 16.4 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase N2227 PF07942.12 gi|20090995|ref|NP_617070.1| - 0.0069 15.6 0.0 0.15 11.2 0.0 2.4 1 1 1 2 2 2 1 N2227-like protein PrmA PF06325.13 gi|20090995|ref|NP_617070.1| - 0.008 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.15 gi|20090995|ref|NP_617070.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Peripla_BP_2 PF01497.18 gi|20090996|ref|NP_617071.1| - 1.2e-36 126.5 0.0 1.6e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.6 gi|20090996|ref|NP_617071.1| - 0.0097 15.5 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain DUF3917 PF13055.6 gi|20090996|ref|NP_617071.1| - 0.032 14.6 0.3 0.055 13.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) Methyltransf_11 PF08241.12 gi|20090998|ref|NP_617073.1| - 1.1e-23 83.7 0.0 2e-23 82.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20090998|ref|NP_617073.1| - 9.1e-22 77.5 0.0 1.2e-21 77.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20090998|ref|NP_617073.1| - 1.7e-19 70.3 0.0 2.9e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20090998|ref|NP_617073.1| - 8.9e-15 54.7 0.0 1.2e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20090998|ref|NP_617073.1| - 2.4e-13 50.3 0.0 3.3e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20090998|ref|NP_617073.1| - 7.2e-09 36.3 0.0 1.3e-08 35.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20090998|ref|NP_617073.1| - 9.1e-09 35.4 0.0 1.7e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20090998|ref|NP_617073.1| - 6.9e-08 32.2 0.0 2.2e-07 30.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|20090998|ref|NP_617073.1| - 7.9e-06 25.1 0.0 1.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|20090998|ref|NP_617073.1| - 5.4e-05 22.9 0.0 8.6e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|20090998|ref|NP_617073.1| - 0.00035 20.6 0.0 0.00048 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|20090998|ref|NP_617073.1| - 0.00051 19.5 0.0 0.00073 19.0 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltransf_9 PF08003.11 gi|20090998|ref|NP_617073.1| - 0.00068 18.7 0.0 0.00094 18.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|20090998|ref|NP_617073.1| - 0.00081 18.9 0.0 0.0011 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.11 gi|20090998|ref|NP_617073.1| - 0.0023 17.6 0.0 0.0049 16.6 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) N2227 PF07942.12 gi|20090998|ref|NP_617073.1| - 0.011 15.0 0.1 0.035 13.3 0.0 1.7 1 1 1 2 2 2 0 N2227-like protein TehB PF03848.14 gi|20090998|ref|NP_617073.1| - 0.012 15.1 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|20090998|ref|NP_617073.1| - 0.012 15.2 0.1 0.056 13.0 0.0 1.8 1 1 1 2 2 2 0 RNA cap guanine-N2 methyltransferase Adeno_E3A PF05248.12 gi|20090998|ref|NP_617073.1| - 0.056 13.5 0.0 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Adenovirus E3A GidB PF02527.15 gi|20090998|ref|NP_617073.1| - 0.17 11.2 0.0 0.33 10.3 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|20090998|ref|NP_617073.1| - 0.19 11.0 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Peripla_BP_2 PF01497.18 gi|20090999|ref|NP_617074.1| - 8.2e-20 71.4 0.0 1.3e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein DUF2683 PF10884.8 gi|20091001|ref|NP_617076.1| - 1.3e-39 134.3 5.4 1.5e-39 134.1 5.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2683) DUF520 PF04461.13 gi|20091001|ref|NP_617076.1| - 0.037 14.2 0.1 0.042 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF520) Ribosomal_L29 PF00831.23 gi|20091002|ref|NP_617077.1| - 0.0053 16.7 0.4 0.0073 16.3 0.4 1.3 1 1 0 1 1 1 1 Ribosomal L29 protein KIP1 PF07765.12 gi|20091002|ref|NP_617077.1| - 0.03 14.4 0.4 0.035 14.2 0.4 1.1 1 0 0 1 1 1 0 KIP1-like protein ParE_toxin PF05016.15 gi|20091002|ref|NP_617077.1| - 0.043 14.4 0.2 0.05 14.2 0.2 1.1 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE DDE_Tnp_IS1 PF03400.13 gi|20091003|ref|NP_617078.1| - 6.6e-13 49.1 0.3 7.3e-13 49.0 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20091004|ref|NP_617079.1| - 1.2e-06 28.2 0.0 2.4e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20091004|ref|NP_617079.1| - 2.7e-06 27.2 0.0 4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20091004|ref|NP_617079.1| - 8.3e-05 22.6 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20091004|ref|NP_617079.1| - 0.0015 18.3 0.3 0.0069 16.1 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20091004|ref|NP_617079.1| - 0.006 16.3 8.3 0.0097 15.6 8.3 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20091004|ref|NP_617079.1| - 0.0075 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20091004|ref|NP_617079.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20091004|ref|NP_617079.1| - 0.02 13.9 0.1 0.029 13.4 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D Zn_Tnp_IS1595 PF12760.7 gi|20091004|ref|NP_617079.1| - 0.047 13.7 6.3 0.074 13.0 6.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|20091004|ref|NP_617079.1| - 0.059 13.5 3.3 0.12 12.5 3.3 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20091004|ref|NP_617079.1| - 0.064 13.4 1.7 1.2 9.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|20091004|ref|NP_617079.1| - 9.4 6.4 8.4 11 6.2 1.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 URO-D PF01208.17 gi|20091005|ref|NP_617080.1| - 3.6e-77 259.8 0.0 4.1e-77 259.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Isochorismatase PF00857.20 gi|20091005|ref|NP_617080.1| - 0.1 12.8 0.0 1.6 8.9 0.1 2.2 2 0 0 2 2 2 0 Isochorismatase family Methyltransf_23 PF13489.6 gi|20091006|ref|NP_617081.1| - 8.7e-14 51.7 0.0 1.6e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091006|ref|NP_617081.1| - 1.5e-07 32.0 0.0 3e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091006|ref|NP_617081.1| - 0.00014 22.5 0.0 0.00031 21.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091006|ref|NP_617081.1| - 0.00015 22.4 0.0 0.00034 21.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20091006|ref|NP_617081.1| - 0.0013 18.3 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|20091006|ref|NP_617081.1| - 0.0025 17.6 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain URO-D PF01208.17 gi|20091008|ref|NP_617083.1| - 2.1e-11 43.6 0.0 2.4e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) FMN_red PF03358.15 gi|20091009|ref|NP_617084.1| - 7.5e-22 77.7 0.0 9.3e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20091009|ref|NP_617084.1| - 8.7e-10 38.6 0.0 1.4e-09 38.0 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Glycos_transf_2 PF00535.26 gi|20091011|ref|NP_617086.1| - 4.4e-22 78.7 0.0 6.5e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20091011|ref|NP_617086.1| - 1.2e-08 35.1 0.0 1.7e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|20091011|ref|NP_617086.1| - 0.013 16.0 0.0 0.024 15.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|20091011|ref|NP_617086.1| - 0.044 13.3 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|20091012|ref|NP_617087.1| - 1.7e-28 99.6 0.1 2.7e-28 98.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20091012|ref|NP_617087.1| - 1.8e-22 80.3 0.0 2.6e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|20091012|ref|NP_617087.1| - 4.7e-11 42.7 0.1 6.4e-11 42.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|20091012|ref|NP_617087.1| - 3.4e-05 23.9 0.0 5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|20091012|ref|NP_617087.1| - 0.00066 19.2 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.6 gi|20091012|ref|NP_617087.1| - 0.002 17.9 0.0 0.014 15.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_7C PF02709.14 gi|20091012|ref|NP_617087.1| - 0.0026 17.4 0.0 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase DDE_3 PF13358.6 gi|20091012|ref|NP_617087.1| - 0.1 12.4 0.0 0.25 11.1 0.0 1.6 2 0 0 2 2 2 0 DDE superfamily endonuclease Alg14 PF08660.11 gi|20091013|ref|NP_617088.1| - 2.7e-21 76.3 0.2 9.7e-19 68.0 0.0 2.1 1 1 1 2 2 2 2 Oligosaccharide biosynthesis protein Alg14 like Glyco_transf_28 PF03033.20 gi|20091013|ref|NP_617088.1| - 1e-06 28.9 0.0 1.5e-06 28.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_tran_28_C PF04101.16 gi|20091014|ref|NP_617089.1| - 1.1e-15 58.1 0.1 1.3e-15 57.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain YfkB PF08756.10 gi|20091014|ref|NP_617089.1| - 0.0038 17.0 0.0 0.0067 16.2 0.0 1.5 1 1 0 1 1 1 1 YfkB-like domain Alpha-amyl_C2 PF07821.12 gi|20091014|ref|NP_617089.1| - 0.038 14.2 0.0 0.077 13.2 0.0 1.5 1 0 0 1 1 1 0 Alpha-amylase C-terminal beta-sheet domain Lact-deh-memb PF09330.11 gi|20091014|ref|NP_617089.1| - 0.061 12.7 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 D-lactate dehydrogenase, membrane binding GyrB_insert PF18053.1 gi|20091014|ref|NP_617089.1| - 0.084 12.8 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 DNA gyrase B subunit insert domain Glycos_transf_1 PF00534.20 gi|20091015|ref|NP_617090.1| - 3.7e-41 140.5 0.0 8.5e-41 139.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20091015|ref|NP_617090.1| - 1.7e-31 109.4 0.0 4.1e-31 108.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20091015|ref|NP_617090.1| - 3.4e-27 95.5 0.0 5.6e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|20091015|ref|NP_617090.1| - 2.6e-14 54.0 0.0 3.7e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|20091015|ref|NP_617090.1| - 7.3e-08 32.7 0.0 1.5e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|20091015|ref|NP_617090.1| - 2.4e-06 27.6 0.3 3.9e-06 26.9 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|20091015|ref|NP_617090.1| - 0.006 16.3 0.0 1.9 8.2 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Hexapep PF00132.24 gi|20091016|ref|NP_617091.1| - 6.3e-13 47.9 18.9 2.6e-10 39.6 4.8 3.3 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20091016|ref|NP_617091.1| - 4.9e-10 39.0 16.6 1.8e-09 37.2 3.7 3.6 2 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Glycos_transf_1 PF00534.20 gi|20091017|ref|NP_617092.1| - 1.4e-19 70.2 0.0 2.3e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20091017|ref|NP_617092.1| - 6.3e-17 62.3 0.0 1.1e-16 61.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|20091017|ref|NP_617092.1| - 9e-06 26.0 0.0 1.8e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20091017|ref|NP_617092.1| - 0.00012 22.2 0.0 0.00026 21.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|20091017|ref|NP_617092.1| - 0.002 18.1 0.1 0.0061 16.6 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Thymidylate_kin PF02223.17 gi|20091018|ref|NP_617093.1| - 0.00011 21.9 2.9 0.0004 20.1 0.1 2.4 2 1 0 2 2 2 1 Thymidylate kinase NTPase_1 PF03266.15 gi|20091018|ref|NP_617093.1| - 0.0015 18.5 0.4 0.0035 17.3 0.1 1.7 2 0 0 2 2 2 1 NTPase AAA_18 PF13238.6 gi|20091018|ref|NP_617093.1| - 0.02 15.5 0.1 0.047 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|20091018|ref|NP_617093.1| - 0.062 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|20091018|ref|NP_617093.1| - 0.072 13.0 0.1 0.13 12.1 0.1 1.7 1 1 0 1 1 1 0 NACHT domain MeaB PF03308.16 gi|20091018|ref|NP_617093.1| - 0.074 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|20091018|ref|NP_617093.1| - 0.094 12.5 0.8 2.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|20091018|ref|NP_617093.1| - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Polbeta PF18765.1 gi|20091019|ref|NP_617094.1| - 1.6e-06 28.1 0.0 3e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20091019|ref|NP_617094.1| - 0.009 16.3 0.0 0.016 15.4 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Glycos_transf_1 PF00534.20 gi|20091020|ref|NP_617095.1| - 8.6e-33 113.3 0.1 2e-32 112.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20091020|ref|NP_617095.1| - 4.4e-19 69.3 0.0 6.9e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20091020|ref|NP_617095.1| - 2.9e-08 33.9 0.0 7.6e-08 32.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|20091020|ref|NP_617095.1| - 5e-07 30.0 0.0 1e-06 29.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|20091020|ref|NP_617095.1| - 8.9e-07 29.0 0.1 1.9e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Mito_fiss_Elm1 PF06258.11 gi|20091020|ref|NP_617095.1| - 0.0025 17.0 0.0 0.0041 16.3 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial fission ELM1 Glyco_transf_20 PF00982.21 gi|20091020|ref|NP_617095.1| - 0.0072 15.0 0.1 0.15 10.7 0.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 20 Glyco_trans_4_4 PF13579.6 gi|20091020|ref|NP_617095.1| - 0.018 15.5 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Polysacc_synt PF01943.17 gi|20091022|ref|NP_617097.1| - 2e-31 109.4 27.8 2e-31 109.4 27.8 2.9 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|20091022|ref|NP_617097.1| - 5.4e-27 94.8 21.3 5.4e-27 94.8 21.3 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|20091022|ref|NP_617097.1| - 3.7e-23 82.2 59.3 3.6e-18 66.0 22.8 3.7 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|20091022|ref|NP_617097.1| - 1.6e-13 50.7 29.5 1.9e-09 37.4 8.9 4.2 4 0 0 4 4 4 2 MatE MurJ PF03023.14 gi|20091022|ref|NP_617097.1| - 2e-12 46.5 41.5 2e-12 46.5 41.5 1.7 1 1 1 2 2 2 1 Lipid II flippase MurJ TAF6_C PF07571.13 gi|20091022|ref|NP_617097.1| - 0.14 12.5 0.2 17 5.9 0.1 3.3 3 0 0 3 3 3 0 TAF6 C-terminal HEAT repeat domain Glyco_transf_4 PF13439.6 gi|20091023|ref|NP_617098.1| - 0.00016 21.8 0.0 0.00044 20.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|20091023|ref|NP_617098.1| - 0.0014 18.2 0.0 0.057 12.9 0.0 2.2 1 1 1 2 2 2 2 Glycosyl transferases group 1 GSHPx PF00255.19 gi|20091023|ref|NP_617098.1| - 0.1 12.2 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Glutathione peroxidase Acyl_transf_3 PF01757.22 gi|20091024|ref|NP_617099.1| - 4.6e-30 104.8 41.0 5.3e-30 104.6 41.0 1.0 1 0 0 1 1 1 1 Acyltransferase family NTP_transferase PF00483.23 gi|20091025|ref|NP_617100.1| - 2.5e-55 187.8 0.0 2.8e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|20091025|ref|NP_617100.1| - 2.7e-12 47.4 0.0 2.9e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|20091025|ref|NP_617100.1| - 0.022 14.7 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Acyl_transf_3 PF01757.22 gi|20091026|ref|NP_617101.1| - 2.2e-07 30.3 36.4 3.6e-05 23.0 36.4 2.1 1 1 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.12 gi|20091026|ref|NP_617101.1| - 1.4e-06 28.0 24.9 1.7e-06 27.7 19.6 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|20091026|ref|NP_617101.1| - 3.4e-05 22.9 12.1 3.8e-05 22.8 1.4 2.6 1 1 0 2 2 2 2 OpgC protein GDP_Man_Dehyd PF16363.5 gi|20091027|ref|NP_617102.1| - 3.3e-83 279.8 0.0 3.8e-83 279.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|20091027|ref|NP_617102.1| - 7.6e-66 222.0 0.0 9.7e-66 221.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|20091027|ref|NP_617102.1| - 6.7e-25 87.8 0.0 2.4e-24 86.0 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|20091027|ref|NP_617102.1| - 9.2e-25 87.2 0.0 1.2e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|20091027|ref|NP_617102.1| - 1.7e-17 63.4 0.1 6.8e-16 58.2 0.1 2.6 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|20091027|ref|NP_617102.1| - 1.9e-14 53.5 0.0 2.6e-14 53.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|20091027|ref|NP_617102.1| - 4e-08 33.4 0.0 5.5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|20091027|ref|NP_617102.1| - 0.0011 18.6 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|20091027|ref|NP_617102.1| - 0.0011 18.5 0.1 0.013 15.0 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|20091027|ref|NP_617102.1| - 0.033 14.1 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 KR domain rve_3 PF13683.6 gi|20091028|ref|NP_617103.1| - 5.5e-06 26.1 0.2 0.00041 20.1 0.2 2.3 1 1 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|20091028|ref|NP_617103.1| - 8.5e-06 26.0 0.0 1.5e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain RBFA PF02033.18 gi|20091029|ref|NP_617104.1| - 0.034 14.6 0.1 0.16 12.5 0.1 2.2 2 0 0 2 2 2 0 Ribosome-binding factor A HTH_23 PF13384.6 gi|20091030|ref|NP_617105.1| - 1.7e-05 24.4 0.2 3.4e-05 23.5 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain rve PF00665.26 gi|20091030|ref|NP_617105.1| - 0.0017 18.5 0.0 0.0029 17.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20091030|ref|NP_617105.1| - 0.02 14.3 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20091030|ref|NP_617105.1| - 0.021 14.9 0.1 0.056 13.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091030|ref|NP_617105.1| - 0.068 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20091030|ref|NP_617105.1| - 0.089 12.6 0.3 0.21 11.4 0.1 1.7 2 0 0 2 2 2 0 Lsm C-terminal URO-D PF01208.17 gi|20091031|ref|NP_617106.1| - 2.1e-09 37.0 0.0 2.3e-09 36.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) FMN_red PF03358.15 gi|20091032|ref|NP_617107.1| - 3.9e-21 75.4 0.0 4.9e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20091032|ref|NP_617107.1| - 1.2e-08 34.9 0.0 4.1e-08 33.2 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin-like fold TPR_1 PF00515.28 gi|20091034|ref|NP_617109.1| - 7.1e-49 161.7 0.2 3.4e-09 36.1 0.1 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091034|ref|NP_617109.1| - 4e-41 135.8 0.6 5.9e-07 29.1 0.1 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091034|ref|NP_617109.1| - 3e-38 129.2 0.2 4.1e-08 32.8 0.0 7.1 4 2 3 7 7 7 6 TPR repeat TPR_8 PF13181.6 gi|20091034|ref|NP_617109.1| - 1.3e-31 106.1 5.2 9.8e-06 25.4 0.1 7.2 5 1 2 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20091034|ref|NP_617109.1| - 1.4e-22 78.4 0.1 0.0078 16.9 0.0 6.3 3 2 3 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20091034|ref|NP_617109.1| - 6.3e-22 77.9 0.1 3e-06 27.6 0.0 4.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20091034|ref|NP_617109.1| - 2.3e-21 76.2 0.0 9.2e-07 29.4 0.0 4.8 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20091034|ref|NP_617109.1| - 2.1e-20 72.7 2.1 2.5e-05 24.5 0.0 6.0 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091034|ref|NP_617109.1| - 1.6e-19 68.5 0.0 0.031 14.3 0.0 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20091034|ref|NP_617109.1| - 7.8e-19 67.6 0.0 4.1e-10 39.7 0.0 4.3 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20091034|ref|NP_617109.1| - 5.8e-17 60.8 0.1 0.017 15.5 0.0 7.1 8 1 0 8 8 6 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20091034|ref|NP_617109.1| - 1.6e-14 53.4 0.4 0.013 16.1 0.0 5.7 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20091034|ref|NP_617109.1| - 3e-14 52.3 0.3 0.11 12.4 0.1 6.2 5 1 1 6 6 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20091034|ref|NP_617109.1| - 5.3e-13 49.0 0.5 0.053 13.8 0.1 4.3 3 1 0 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.9 gi|20091034|ref|NP_617109.1| - 4.3e-08 33.1 0.1 0.52 10.0 0.0 4.0 2 1 2 4 4 4 3 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|20091034|ref|NP_617109.1| - 7.5e-08 31.7 0.1 0.0011 18.0 0.0 3.8 3 1 1 4 4 4 1 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|20091034|ref|NP_617109.1| - 1.9e-07 31.1 3.4 0.02 15.0 0.0 5.3 6 0 0 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.6 gi|20091034|ref|NP_617109.1| - 6e-07 28.9 0.1 0.19 10.9 0.0 4.3 2 2 1 4 4 4 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|20091034|ref|NP_617109.1| - 1.4e-06 28.1 0.6 0.82 9.4 0.1 4.2 2 2 2 4 4 4 2 26S proteasome subunit RPN7 DUF3856 PF12968.7 gi|20091034|ref|NP_617109.1| - 1.5e-06 28.3 1.8 0.019 15.0 1.2 4.3 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) MIT PF04212.18 gi|20091034|ref|NP_617109.1| - 1.2e-05 25.3 6.5 2.2 8.4 0.1 5.6 6 0 0 6 6 6 1 MIT (microtubule interacting and transport) domain BTAD PF03704.17 gi|20091034|ref|NP_617109.1| - 0.00027 21.4 0.4 0.052 14.0 0.0 3.5 3 1 0 4 4 4 1 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|20091034|ref|NP_617109.1| - 0.00048 20.1 0.1 0.24 11.4 0.0 3.2 1 1 1 2 2 2 2 Putative TPR-like repeat TPR_3 PF07720.12 gi|20091034|ref|NP_617109.1| - 0.00051 20.0 2.0 0.086 12.9 0.1 3.9 5 0 0 5 5 5 1 Tetratricopeptide repeat PPR PF01535.20 gi|20091034|ref|NP_617109.1| - 0.0056 16.9 14.5 1 9.8 0.2 5.5 6 0 0 6 6 5 2 PPR repeat DUF5113 PF17140.4 gi|20091034|ref|NP_617109.1| - 0.0078 16.0 0.0 7.9 6.3 0.0 4.2 4 1 1 5 5 5 0 Domain of unknown function (DUF5113) TPR_4 PF07721.14 gi|20091034|ref|NP_617109.1| - 0.008 16.7 0.0 12 6.8 0.0 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|20091034|ref|NP_617109.1| - 0.011 15.2 0.2 7.6 5.9 0.0 3.5 2 1 2 4 4 4 0 Coatomer epsilon subunit DUF4810 PF16068.5 gi|20091034|ref|NP_617109.1| - 0.021 15.4 2.7 16 6.1 0.0 4.3 2 1 2 4 4 3 0 Domain of unknown function (DUF4810) MAS20 PF02064.15 gi|20091034|ref|NP_617109.1| - 0.055 13.6 0.6 1.5 8.9 0.3 2.9 3 1 0 3 3 3 0 MAS20 protein import receptor NRBF2_MIT PF17169.4 gi|20091034|ref|NP_617109.1| - 0.3 11.3 1.6 33 4.8 0.0 2.9 2 1 1 3 3 2 0 MIT domain of nuclear receptor-binding factor 2 SPOB_a PF14689.6 gi|20091034|ref|NP_617109.1| - 0.43 10.3 1.0 6.6 6.5 0.0 3.1 3 0 0 3 3 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain HTH_Bact PF18768.1 gi|20091034|ref|NP_617109.1| - 0.47 10.1 2.8 2 8.1 0.0 3.4 5 0 0 5 5 4 0 Helix-turn-helix bacterial domain Peptidase_M50 PF02163.22 gi|20091035|ref|NP_617110.1| - 0.09 12.0 0.1 0.09 12.0 0.1 2.2 3 0 0 3 3 3 0 Peptidase family M50 Bac_export_2 PF01312.19 gi|20091035|ref|NP_617110.1| - 1.5 8.0 3.8 1.3 8.1 3.1 1.4 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family Ig_4 PF16680.5 gi|20091036|ref|NP_617111.1| - 0.071 13.4 0.2 0.087 13.1 0.2 1.1 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 delta chain YdjM PF04307.14 gi|20091037|ref|NP_617112.1| - 2.2e-09 36.9 7.6 4.5e-08 32.6 7.6 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|20091037|ref|NP_617112.1| - 0.00011 22.3 0.1 0.00014 21.9 0.1 1.0 1 0 0 1 1 1 1 Zinc dependent phospholipase C Pyridox_ox_2 PF12900.7 gi|20091038|ref|NP_617113.1| - 2.2e-22 79.6 0.0 2.5e-22 79.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|20091038|ref|NP_617113.1| - 5.7e-06 26.4 0.0 7.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Peptidase_C39_2 PF13529.6 gi|20091039|ref|NP_617114.1| - 2.1e-17 64.0 0.0 3.1e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase_C39 like family Peptidase_C70 PF12385.8 gi|20091039|ref|NP_617114.1| - 6.3e-14 52.2 0.0 1e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 Peptidase_C39 PF03412.15 gi|20091039|ref|NP_617114.1| - 5.3e-09 36.0 0.0 2.4e-08 33.8 0.0 2.1 2 1 0 2 2 2 1 Peptidase C39 family DUF3335 PF11814.8 gi|20091039|ref|NP_617114.1| - 2.1e-07 30.6 0.5 0.00038 20.0 0.0 2.2 1 1 1 2 2 2 2 Peptidase_C39 like family Guanylate_cyc_2 PF09778.9 gi|20091039|ref|NP_617114.1| - 0.0035 16.7 0.0 0.56 9.5 0.0 2.4 2 1 0 2 2 2 2 Guanylylate cyclase BtrH_N PF14399.6 gi|20091039|ref|NP_617114.1| - 0.062 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal VWA_2 PF13519.6 gi|20091040|ref|NP_617115.1| - 8e-11 42.5 0.2 2e-10 41.3 0.2 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|20091040|ref|NP_617115.1| - 4.1e-08 32.9 0.0 1.6e-06 27.7 0.0 2.2 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|20091040|ref|NP_617115.1| - 1.9e-06 28.2 0.2 4.8e-06 26.9 0.1 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|20091040|ref|NP_617115.1| - 0.0011 18.9 0.0 0.003 17.5 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|20091041|ref|NP_617116.1| - 1.4e-26 93.2 0.0 3e-26 92.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|20091041|ref|NP_617116.1| - 1.9e-19 69.3 1.0 4.5e-19 68.1 1.0 1.7 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|20091041|ref|NP_617116.1| - 1.9e-06 28.3 0.0 1.2e-05 25.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|20091041|ref|NP_617116.1| - 2.5e-05 24.1 0.0 4.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|20091041|ref|NP_617116.1| - 0.0069 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|20091041|ref|NP_617116.1| - 0.0078 16.6 0.0 0.026 14.9 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|20091041|ref|NP_617116.1| - 0.017 14.7 0.0 0.21 11.1 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|20091041|ref|NP_617116.1| - 0.024 14.0 0.0 0.069 12.5 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|20091041|ref|NP_617116.1| - 0.067 12.3 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 MCM P-loop domain DUF2603 PF10788.9 gi|20091041|ref|NP_617116.1| - 0.097 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2603) AAA_PrkA PF08298.11 gi|20091041|ref|NP_617116.1| - 0.11 11.4 0.0 6.8 5.5 0.0 2.9 2 1 1 3 3 3 0 PrkA AAA domain IstB_IS21 PF01695.17 gi|20091042|ref|NP_617117.1| - 6.2e-66 221.5 0.0 1.1e-65 220.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20091042|ref|NP_617117.1| - 3.8e-05 23.6 0.0 7.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20091042|ref|NP_617117.1| - 8.9e-05 22.9 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|20091042|ref|NP_617117.1| - 0.00031 21.0 0.2 0.0043 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20091042|ref|NP_617117.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein RNA_helicase PF00910.22 gi|20091042|ref|NP_617117.1| - 0.0021 18.4 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RuvB_N PF05496.12 gi|20091042|ref|NP_617117.1| - 0.0035 17.1 0.0 0.0074 16.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|20091042|ref|NP_617117.1| - 0.017 15.4 0.2 6.6 7.0 0.0 3.0 1 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|20091042|ref|NP_617117.1| - 0.02 15.3 0.0 0.097 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20091042|ref|NP_617117.1| - 0.021 14.7 0.0 0.062 13.2 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|20091042|ref|NP_617117.1| - 0.026 15.0 1.2 0.26 11.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20091042|ref|NP_617117.1| - 0.043 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|20091042|ref|NP_617117.1| - 0.052 13.0 0.0 0.41 10.1 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|20091042|ref|NP_617117.1| - 0.1 13.1 0.7 0.27 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20091042|ref|NP_617117.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|20091042|ref|NP_617117.1| - 0.25 11.1 1.2 36 4.0 0.0 3.0 1 1 2 3 3 3 0 AAA domain rve PF00665.26 gi|20091043|ref|NP_617118.1| - 6.8e-25 87.6 0.0 1.3e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20091043|ref|NP_617118.1| - 6.5e-05 22.6 0.0 0.00017 21.3 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20091043|ref|NP_617118.1| - 0.00027 20.9 0.0 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|20091043|ref|NP_617118.1| - 0.0025 16.9 0.0 0.0053 15.8 0.0 1.5 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20091043|ref|NP_617118.1| - 0.0035 17.1 0.1 0.0088 15.8 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20091043|ref|NP_617118.1| - 0.0071 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|20091043|ref|NP_617118.1| - 0.014 15.1 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|20091043|ref|NP_617118.1| - 0.017 15.0 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20091043|ref|NP_617118.1| - 0.029 14.3 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|20091043|ref|NP_617118.1| - 0.031 14.1 0.0 0.1 12.4 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|20091043|ref|NP_617118.1| - 0.038 13.8 0.0 0.095 12.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_1 PF13411.6 gi|20091043|ref|NP_617118.1| - 0.053 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_7 PF02796.15 gi|20091043|ref|NP_617118.1| - 0.057 13.5 0.2 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase MetOD2 PF18548.1 gi|20091043|ref|NP_617118.1| - 0.061 13.4 0.0 5.8 7.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 DUF746 PF05344.11 gi|20091043|ref|NP_617118.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_36 PF13730.6 gi|20091043|ref|NP_617118.1| - 0.074 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|20091043|ref|NP_617118.1| - 0.11 12.6 0.2 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 gi|20091043|ref|NP_617118.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20091043|ref|NP_617118.1| - 0.13 11.9 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) CotH PF08757.11 gi|20091044|ref|NP_617119.1| - 3.1e-35 122.3 4.6 6e-32 111.5 0.6 2.2 2 0 0 2 2 2 2 CotH kinase protein DUF4956 PF16316.5 gi|20091045|ref|NP_617120.1| - 2.6e-15 56.5 6.9 3.5e-15 56.1 6.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4956) MgtC PF02308.16 gi|20091045|ref|NP_617120.1| - 0.019 15.3 10.5 0.029 14.7 10.5 1.3 1 0 0 1 1 1 0 MgtC family DUF4271 PF14093.6 gi|20091045|ref|NP_617120.1| - 0.38 10.7 11.3 0.034 14.0 2.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) DUF3810 PF12725.7 gi|20091045|ref|NP_617120.1| - 0.48 9.7 4.9 19 4.5 4.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) Cytochrom_B_C PF00032.17 gi|20091045|ref|NP_617120.1| - 0.56 10.5 3.4 0.47 10.8 1.2 1.9 1 1 1 2 2 2 0 Cytochrome b(C-terminal)/b6/petD DUF3267 PF11667.8 gi|20091045|ref|NP_617120.1| - 6.3 7.1 10.1 4.7 7.5 1.7 2.4 1 1 1 2 2 2 0 Putative zincin peptidase VTC PF09359.10 gi|20091046|ref|NP_617121.1| - 2.6e-44 151.7 3.9 4.2e-44 151.0 3.9 1.3 1 0 0 1 1 1 1 VTC domain AAA_lid_1 PF17857.1 gi|20091046|ref|NP_617121.1| - 0.012 15.9 0.1 0.026 14.7 0.1 1.6 1 0 0 1 1 1 0 AAA+ lid domain U5_2-snRNA_bdg PF10597.9 gi|20091046|ref|NP_617121.1| - 0.041 13.9 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 MarR PF01047.22 gi|20091047|ref|NP_617122.1| - 9.9e-14 51.0 0.0 1.8e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20091047|ref|NP_617122.1| - 2.6e-10 40.7 0.0 4e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|20091047|ref|NP_617122.1| - 3.2e-09 36.5 0.0 5e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|20091047|ref|NP_617122.1| - 0.00013 22.0 0.0 0.00024 21.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|20091047|ref|NP_617122.1| - 0.00026 20.8 0.0 0.00056 19.7 0.0 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|20091047|ref|NP_617122.1| - 0.00067 19.4 0.0 0.0014 18.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|20091047|ref|NP_617122.1| - 0.001 18.9 0.1 0.0026 17.6 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|20091047|ref|NP_617122.1| - 0.0018 18.2 0.1 0.015 15.2 0.0 2.2 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|20091047|ref|NP_617122.1| - 0.0018 18.2 0.0 0.004 17.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|20091047|ref|NP_617122.1| - 0.0088 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Fe_dep_repress PF01325.19 gi|20091047|ref|NP_617122.1| - 0.039 14.2 0.3 0.1 12.8 0.1 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3116 PF11313.8 gi|20091047|ref|NP_617122.1| - 0.044 13.6 0.0 0.13 12.2 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) PadR PF03551.14 gi|20091047|ref|NP_617122.1| - 0.078 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|20091048|ref|NP_617123.1| - 4.5e-26 90.5 0.0 5.7e-26 90.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|20091048|ref|NP_617123.1| - 9.2e-05 22.2 0.0 0.00038 20.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20091048|ref|NP_617123.1| - 0.0004 20.2 0.0 0.00065 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|20091048|ref|NP_617123.1| - 0.0044 17.3 0.0 0.013 15.8 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR PF03551.14 gi|20091048|ref|NP_617123.1| - 0.052 13.5 0.1 3.4 7.7 0.0 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family MarR PF01047.22 gi|20091048|ref|NP_617123.1| - 0.055 13.4 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.16 gi|20091048|ref|NP_617123.1| - 0.065 13.6 0.0 0.088 13.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor GntR PF00392.21 gi|20091048|ref|NP_617123.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|20091048|ref|NP_617123.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MMPL PF03176.15 gi|20091049|ref|NP_617124.1| - 2.1e-54 184.7 20.3 1.7e-28 99.6 4.1 2.7 2 1 1 3 3 3 2 MMPL family SecD_SecF PF02355.16 gi|20091049|ref|NP_617124.1| - 5e-10 39.1 8.6 5e-10 39.1 8.6 3.2 2 1 1 3 3 3 1 Protein export membrane protein Sterol-sensing PF12349.8 gi|20091049|ref|NP_617124.1| - 1.3e-08 34.8 19.5 1.9e-05 24.5 4.4 2.8 2 1 1 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|20091049|ref|NP_617124.1| - 6.8e-08 31.1 16.6 6.6e-05 21.2 6.9 2.8 3 0 0 3 3 3 2 Patched family ACR_tran PF00873.19 gi|20091049|ref|NP_617124.1| - 1.5e-06 26.3 27.0 0.00042 18.1 6.2 2.9 3 0 0 3 3 3 2 AcrB/AcrD/AcrF family HpcH_HpaI PF03328.14 gi|20091049|ref|NP_617124.1| - 0.0039 16.4 0.1 0.0075 15.4 0.1 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family TrkH PF02386.16 gi|20091050|ref|NP_617125.1| - 1.4e-48 165.6 19.7 1.9e-30 105.8 7.0 2.1 1 1 1 2 2 2 2 Cation transport protein TrkA_N PF02254.18 gi|20091051|ref|NP_617126.1| - 2e-26 92.5 1.1 3e-26 92.0 1.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|20091051|ref|NP_617126.1| - 3.1e-11 42.9 0.3 4.8e-10 39.1 0.0 2.7 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_10 PF13460.6 gi|20091051|ref|NP_617126.1| - 3.8e-05 23.7 0.1 4.4e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|20091051|ref|NP_617126.1| - 0.00024 21.6 0.1 0.001 19.6 0.1 2.0 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|20091051|ref|NP_617126.1| - 0.0015 18.9 0.2 0.0035 17.7 0.2 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|20091051|ref|NP_617126.1| - 0.0069 16.9 0.0 0.023 15.2 0.1 1.8 2 0 0 2 2 2 1 XdhC Rossmann domain adh_short PF00106.25 gi|20091051|ref|NP_617126.1| - 0.007 15.8 0.2 0.011 15.2 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase DUF2117 PF09890.9 gi|20091051|ref|NP_617126.1| - 0.012 15.1 0.4 0.018 14.5 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) 3HCDH_N PF02737.18 gi|20091051|ref|NP_617126.1| - 0.016 15.1 0.5 0.024 14.5 0.5 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|20091051|ref|NP_617126.1| - 0.018 15.2 0.2 0.028 14.6 0.2 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|20091051|ref|NP_617126.1| - 0.039 13.9 0.0 0.5 10.3 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|20091051|ref|NP_617126.1| - 0.041 13.1 0.1 0.053 12.8 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|20091051|ref|NP_617126.1| - 0.051 12.8 0.0 0.1 11.8 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain CTP_transf_3 PF02348.19 gi|20091051|ref|NP_617126.1| - 0.056 13.3 0.3 0.65 9.9 0.0 2.1 1 1 1 2 2 2 0 Cytidylyltransferase DUF4342 PF14242.6 gi|20091051|ref|NP_617126.1| - 0.062 13.3 0.3 0.3 11.1 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) HI0933_like PF03486.14 gi|20091051|ref|NP_617126.1| - 0.066 11.9 0.0 0.077 11.7 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein adh_short_C2 PF13561.6 gi|20091051|ref|NP_617126.1| - 0.073 12.6 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.16 gi|20091051|ref|NP_617126.1| - 0.097 12.3 0.0 0.25 11.0 0.0 1.8 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA MazE_antitoxin PF04014.18 gi|20091051|ref|NP_617126.1| - 0.34 10.9 2.2 15 5.7 0.1 2.9 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin MarR PF01047.22 gi|20091052|ref|NP_617127.1| - 5.5e-12 45.4 0.1 1.7e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|20091052|ref|NP_617127.1| - 5.8e-09 36.3 0.0 1.1e-08 35.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|20091052|ref|NP_617127.1| - 6.6e-08 32.3 0.0 1.5e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|20091052|ref|NP_617127.1| - 0.0078 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|20091052|ref|NP_617127.1| - 0.0088 16.0 0.1 0.023 14.7 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HxlR PF01638.17 gi|20091052|ref|NP_617127.1| - 0.0088 15.9 0.0 0.019 14.8 0.0 1.6 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_54 PF18607.1 gi|20091052|ref|NP_617127.1| - 0.044 13.9 0.1 0.22 11.6 0.0 2.1 2 1 0 2 2 2 0 ParA helix turn helix domain TFIIE_alpha PF02002.17 gi|20091052|ref|NP_617127.1| - 0.053 13.4 0.4 0.46 10.4 0.4 2.2 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|20091052|ref|NP_617127.1| - 0.062 13.1 0.0 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|20091052|ref|NP_617127.1| - 0.077 12.9 0.1 0.26 11.2 0.0 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|20091052|ref|NP_617127.1| - 0.082 13.1 0.0 0.2 11.9 0.0 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|20091052|ref|NP_617127.1| - 0.11 12.5 0.1 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF844 PF05815.11 gi|20091052|ref|NP_617127.1| - 0.11 11.7 0.1 0.26 10.4 0.1 1.6 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF844) FtsK_gamma PF09397.10 gi|20091052|ref|NP_617127.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Ftsk gamma domain TrmB PF01978.19 gi|20091053|ref|NP_617128.1| - 3e-24 84.7 0.0 4e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|20091053|ref|NP_617128.1| - 2.8e-05 23.8 0.0 0.00021 21.0 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20091053|ref|NP_617128.1| - 0.00037 20.3 0.0 0.00063 19.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|20091053|ref|NP_617128.1| - 0.0053 16.7 0.0 0.013 15.4 0.0 1.7 1 1 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|20091053|ref|NP_617128.1| - 0.013 15.9 0.0 0.025 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|20091053|ref|NP_617128.1| - 0.055 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|20091053|ref|NP_617128.1| - 0.16 12.0 0.0 15 5.6 0.0 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family TetR_N PF00440.23 gi|20091053|ref|NP_617128.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family TFIIE_alpha PF02002.17 gi|20091054|ref|NP_617129.1| - 0.0082 16.0 0.8 0.009 15.9 0.8 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|20091054|ref|NP_617129.1| - 0.012 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|20091054|ref|NP_617129.1| - 0.02 14.8 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF5635 PF18685.1 gi|20091054|ref|NP_617129.1| - 0.03 14.3 0.0 0.031 14.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5635) HTH_24 PF13412.6 gi|20091054|ref|NP_617129.1| - 0.035 13.7 0.1 0.049 13.2 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DDRGK PF09756.9 gi|20091054|ref|NP_617129.1| - 0.042 13.4 1.7 0.044 13.4 1.7 1.2 1 1 0 1 1 1 0 DDRGK domain DUF1635 PF07795.11 gi|20091054|ref|NP_617129.1| - 0.19 11.6 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) AI-2E_transport PF01594.16 gi|20091055|ref|NP_617130.1| - 3.6e-43 148.0 25.0 4.5e-43 147.7 25.0 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF3488 PF11992.8 gi|20091055|ref|NP_617130.1| - 2.5 7.0 10.2 5.5 5.9 10.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) ABC_tran PF00005.27 gi|20091056|ref|NP_617131.1| - 4.2e-24 85.6 0.0 5.5e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20091056|ref|NP_617131.1| - 3e-09 37.1 0.6 6e-05 23.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20091056|ref|NP_617131.1| - 6.2e-05 22.9 0.3 0.076 12.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|20091056|ref|NP_617131.1| - 0.00086 19.9 0.2 0.0015 19.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|20091056|ref|NP_617131.1| - 0.018 14.5 0.1 0.87 9.0 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|20091056|ref|NP_617131.1| - 0.035 14.5 0.0 0.06 13.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|20091056|ref|NP_617131.1| - 0.043 13.5 0.3 0.075 12.8 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|20091056|ref|NP_617131.1| - 0.072 12.5 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|20091056|ref|NP_617131.1| - 0.092 12.5 0.1 0.18 11.5 0.1 1.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|20091056|ref|NP_617131.1| - 0.12 12.8 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|20091056|ref|NP_617131.1| - 0.16 10.6 1.0 9.5 4.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|20091056|ref|NP_617131.1| - 0.18 11.7 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|20091056|ref|NP_617131.1| - 0.2 12.0 0.1 0.32 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain Ion_trans_2 PF07885.16 gi|20091059|ref|NP_617134.1| - 4.6e-24 84.2 12.7 7e-24 83.6 12.7 1.3 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|20091059|ref|NP_617134.1| - 0.0031 16.8 7.7 0.0076 15.5 7.7 1.7 1 1 0 1 1 1 1 Ion transport protein DUF2254 PF10011.9 gi|20091059|ref|NP_617134.1| - 0.013 14.4 0.4 0.019 13.8 0.0 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) Lig_chan PF00060.26 gi|20091059|ref|NP_617134.1| - 0.057 13.3 0.3 0.088 12.6 0.2 1.4 1 1 0 1 1 1 0 Ligand-gated ion channel DUF2099 PF09872.9 gi|20091060|ref|NP_617135.1| - 1.9e-108 361.5 4.1 2.2e-108 361.4 4.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) MTH865 PF07747.11 gi|20091061|ref|NP_617136.1| - 9.6e-30 102.2 0.1 1.1e-29 102.0 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Phage_integrase PF00589.22 gi|20091064|ref|NP_617139.1| - 1.2e-19 70.8 0.8 1.5e-19 70.5 0.1 1.5 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|20091064|ref|NP_617139.1| - 5.6e-16 58.8 1.1 1.7e-15 57.3 0.5 2.1 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|20091064|ref|NP_617139.1| - 0.00026 20.9 0.7 0.00066 19.6 0.7 1.6 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|20091064|ref|NP_617139.1| - 0.001 18.4 1.1 0.0022 17.3 1.1 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|20091064|ref|NP_617139.1| - 0.0018 18.0 2.0 0.0054 16.4 2.0 1.9 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_5 PF13102.6 gi|20091064|ref|NP_617139.1| - 0.0035 17.7 1.6 0.0035 17.7 1.6 2.1 2 1 0 2 2 2 1 Phage integrase SAM-like domain Lig_C PF18330.1 gi|20091064|ref|NP_617139.1| - 0.0069 16.4 0.4 3.9 7.5 0.0 2.7 3 0 0 3 3 3 2 Ligase Pab1020 C-terminal region zinc_ribbon_15 PF17032.5 gi|20091064|ref|NP_617139.1| - 0.0076 17.0 1.2 0.018 15.8 1.2 1.6 1 0 0 1 1 1 1 zinc-ribbon family Phage_int_SAM_1 PF02899.17 gi|20091064|ref|NP_617139.1| - 0.018 15.3 0.1 0.075 13.3 0.1 2.1 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|20091071|ref|NP_617146.1| - 5.3e-21 75.1 0.1 7.8e-21 74.6 0.1 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|20091071|ref|NP_617146.1| - 1.6e-07 31.7 0.1 4.6e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|20091071|ref|NP_617146.1| - 0.00014 22.1 0.1 0.017 15.4 0.2 2.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain AAA_15 PF13175.6 gi|20091072|ref|NP_617147.1| - 1.1e-24 87.9 4.8 2.2e-11 44.1 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|20091072|ref|NP_617147.1| - 2.2e-24 86.8 0.4 1e-16 61.6 0.1 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20091072|ref|NP_617147.1| - 4.6e-11 43.6 0.4 4.6e-11 43.6 0.4 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|20091072|ref|NP_617147.1| - 4.8e-09 36.0 0.4 0.00011 21.7 0.3 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|20091072|ref|NP_617147.1| - 0.00041 20.0 0.0 0.00088 18.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20091072|ref|NP_617147.1| - 0.00083 19.0 0.1 0.0032 17.2 0.2 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain TniB PF05621.11 gi|20091072|ref|NP_617147.1| - 0.014 14.8 0.2 0.14 11.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 gi|20091072|ref|NP_617147.1| - 0.029 14.9 0.7 0.41 11.2 0.4 2.7 2 1 0 2 2 2 0 ABC transporter AAA_22 PF13401.6 gi|20091072|ref|NP_617147.1| - 0.044 14.1 0.4 3 8.1 0.1 2.3 2 0 0 2 2 2 0 AAA domain DUF2813 PF11398.8 gi|20091072|ref|NP_617147.1| - 0.07 12.4 0.5 2.5 7.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) ABC_ATPase PF09818.9 gi|20091072|ref|NP_617147.1| - 0.077 11.8 0.1 0.11 11.2 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Methylase_S PF01420.19 gi|20091073|ref|NP_617148.1| - 2e-05 24.9 22.9 1 9.6 0.4 6.1 2 2 5 7 7 7 5 Type I restriction modification DNA specificity domain TMP_2 PF06791.13 gi|20091073|ref|NP_617148.1| - 0.00011 21.9 9.0 0.11 12.1 1.4 3.4 1 1 2 3 3 3 2 Prophage tail length tape measure protein DUF918 PF06033.11 gi|20091073|ref|NP_617148.1| - 0.00074 19.6 0.8 13 5.7 0.0 4.5 1 1 4 5 5 5 0 Nucleopolyhedrovirus protein of unknown function (DUF918) Mo25 PF08569.11 gi|20091073|ref|NP_617148.1| - 0.0017 17.8 12.6 0.066 12.6 3.9 2.2 1 1 1 2 2 2 2 Mo25-like FH2 PF02181.23 gi|20091073|ref|NP_617148.1| - 0.0071 15.5 5.1 0.8 8.8 0.4 2.4 1 1 2 3 3 3 3 Formin Homology 2 Domain GCV_H PF01597.19 gi|20091073|ref|NP_617148.1| - 0.0078 16.1 13.8 18 5.2 0.1 6.0 1 1 5 6 6 6 0 Glycine cleavage H-protein HisKA PF00512.25 gi|20091073|ref|NP_617148.1| - 0.0096 15.9 0.4 21 5.3 0.1 3.6 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PSD2 PF07624.11 gi|20091073|ref|NP_617148.1| - 0.025 14.4 3.6 25 4.7 0.0 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF1585) TetR_C_36 PF18598.1 gi|20091073|ref|NP_617148.1| - 0.059 13.3 1.5 0.35 10.8 0.1 2.7 1 1 2 3 3 3 0 Tetracyclin repressor-like, C-terminal domain YkyA PF10368.9 gi|20091073|ref|NP_617148.1| - 0.13 11.9 19.5 0.87 9.2 8.1 2.4 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein DNA_PPF PF02916.15 gi|20091073|ref|NP_617148.1| - 0.22 11.9 15.9 8.3 6.9 1.7 4.4 1 1 4 5 5 5 0 DNA polymerase processivity factor Gam PF06064.11 gi|20091073|ref|NP_617148.1| - 0.33 11.2 7.0 37 4.6 0.2 4.1 2 2 2 4 4 4 0 Host-nuclease inhibitor protein Gam DUF643 PF04867.12 gi|20091073|ref|NP_617148.1| - 0.46 11.1 9.1 17 6.1 1.8 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF643) MutS_III PF05192.18 gi|20091073|ref|NP_617148.1| - 1.1 9.5 4.5 11 6.1 4.5 2.1 1 1 0 1 1 1 0 MutS domain III 2-Hacid_dh PF00389.30 gi|20091073|ref|NP_617148.1| - 2.2 8.0 3.6 1.8e+02 1.7 3.5 3.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Phage_holin_7_1 PF16081.5 gi|20091073|ref|NP_617148.1| - 2.3 8.4 10.1 1.6 8.9 1.3 2.5 1 1 1 3 3 3 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family Leu_zip PF15294.6 gi|20091073|ref|NP_617148.1| - 2.6 7.5 11.6 3.2 7.2 6.0 2.2 1 1 1 2 2 2 0 Leucine zipper TMPIT PF07851.13 gi|20091073|ref|NP_617148.1| - 3.9 6.6 9.8 4.6 6.4 1.6 2.2 1 1 1 2 2 2 0 TMPIT-like protein PAG PF15347.6 gi|20091074|ref|NP_617149.1| - 0.0095 15.0 0.0 0.012 14.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoprotein associated with glycosphingolipid-enriched DUF927 PF06048.11 gi|20091075|ref|NP_617150.1| - 8.1e-81 271.7 0.0 1.1e-80 271.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF927) HTH_56 PF18662.1 gi|20091075|ref|NP_617150.1| - 3.3e-05 23.9 0.3 0.00015 21.8 0.3 2.1 1 0 0 1 1 1 1 Cch helix turn helix domain SapB_1 PF05184.15 gi|20091076|ref|NP_617151.1| - 0.062 13.3 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Saposin-like type B, region 1 Glucos_trans_II PF14264.6 gi|20091076|ref|NP_617151.1| - 0.46 9.8 8.4 1.1 8.6 0.4 2.1 1 1 1 2 2 2 0 Glucosyl transferase GtrII DUF2099 PF09872.9 gi|20091078|ref|NP_617153.1| - 1.4e-115 384.9 1.2 1.6e-115 384.7 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) TPR_12 PF13424.6 gi|20091079|ref|NP_617154.1| - 8.5e-56 186.2 0.9 8.5e-14 51.6 0.4 5.6 2 2 2 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091079|ref|NP_617154.1| - 8.5e-53 172.6 0.1 3.5e-07 29.8 0.0 9.7 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20091079|ref|NP_617154.1| - 2.9e-50 166.1 14.8 2.3e-07 30.3 0.6 8.8 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091079|ref|NP_617154.1| - 3.2e-37 123.6 13.8 5.6e-06 26.1 0.2 9.4 10 0 0 10 10 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20091079|ref|NP_617154.1| - 3.5e-36 120.4 22.7 7.2e-05 22.7 0.1 9.2 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20091079|ref|NP_617154.1| - 4.6e-36 121.7 1.4 0.00038 20.2 0.0 9.0 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20091079|ref|NP_617154.1| - 7.4e-18 65.0 0.0 8.1e-08 32.0 0.0 3.2 1 1 2 3 3 3 3 MalT-like TPR region TPR_14 PF13428.6 gi|20091079|ref|NP_617154.1| - 4.5e-15 55.0 0.0 0.31 12.0 0.0 8.2 7 1 1 8 8 7 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091079|ref|NP_617154.1| - 3.9e-14 52.0 16.4 0.0023 17.6 0.1 7.7 8 0 0 8 8 8 4 TPR repeat TPR_6 PF13174.6 gi|20091079|ref|NP_617154.1| - 4.9e-13 48.8 5.2 2 9.3 0.0 8.1 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20091079|ref|NP_617154.1| - 9.9e-11 42.0 5.1 0.016 15.7 0.1 5.1 4 1 1 5 5 4 3 Tetratricopeptide repeat SNAP PF14938.6 gi|20091079|ref|NP_617154.1| - 5.5e-10 39.1 0.6 0.00014 21.4 0.1 2.6 1 1 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_16 PF13432.6 gi|20091079|ref|NP_617154.1| - 4.6e-09 36.8 0.0 0.042 14.5 0.1 5.7 6 2 0 6 6 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20091079|ref|NP_617154.1| - 4.8e-08 33.1 4.5 0.069 13.4 0.1 6.1 3 3 2 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 Rapsyn_N PF10579.9 gi|20091079|ref|NP_617154.1| - 6.7e-08 32.5 4.1 0.018 15.1 0.1 5.2 3 1 2 5 5 5 2 Rapsyn N-terminal myristoylation and linker region ANAPC5 PF12862.7 gi|20091079|ref|NP_617154.1| - 1e-07 31.9 2.8 0.25 11.4 0.0 6.9 3 2 2 6 6 6 1 Anaphase-promoting complex subunit 5 TPR_15 PF13429.6 gi|20091079|ref|NP_617154.1| - 4.4e-07 29.4 0.7 0.00068 18.9 0.0 4.9 5 2 1 6 6 6 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20091079|ref|NP_617154.1| - 3e-06 27.3 0.0 12 6.2 0.0 6.1 6 1 1 7 7 7 0 Tetratricopeptide repeat ComR_TPR PF18710.1 gi|20091079|ref|NP_617154.1| - 1.1e-05 25.1 5.5 0.039 13.5 0.1 3.9 1 1 1 3 3 3 2 ComR tetratricopeptide RPN7 PF10602.9 gi|20091079|ref|NP_617154.1| - 1.1e-05 25.2 4.6 0.92 9.2 0.1 4.6 1 1 1 3 3 3 2 26S proteasome subunit RPN7 PHM7_cyt PF14703.6 gi|20091079|ref|NP_617154.1| - 0.00055 20.2 0.1 0.055 13.7 0.0 3.4 2 1 1 3 3 3 1 Cytosolic domain of 10TM putative phosphate transporter MIT PF04212.18 gi|20091079|ref|NP_617154.1| - 0.00097 19.2 10.6 9 6.4 0.0 6.3 4 1 2 6 6 6 0 MIT (microtubule interacting and transport) domain DUF4810 PF16068.5 gi|20091079|ref|NP_617154.1| - 0.0014 19.1 8.9 0.33 11.5 0.1 6.0 3 2 4 7 7 6 1 Domain of unknown function (DUF4810) PPR PF01535.20 gi|20091079|ref|NP_617154.1| - 0.0039 17.3 12.3 18 5.9 0.1 8.2 10 0 0 10 10 8 0 PPR repeat DUF3808 PF10300.9 gi|20091079|ref|NP_617154.1| - 0.013 14.3 0.2 0.035 12.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3808) Arch_fla_DE PF04659.13 gi|20091079|ref|NP_617154.1| - 0.015 15.1 0.2 5.1 7.0 0.0 3.3 3 0 0 3 3 3 0 Archaeal flagella protein DUF2225 PF09986.9 gi|20091079|ref|NP_617154.1| - 0.026 14.2 2.5 13 5.5 0.4 3.6 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_21 PF09976.9 gi|20091079|ref|NP_617154.1| - 0.027 14.2 0.5 2.5 7.8 0.0 3.5 3 2 1 4 4 4 0 Tetratricopeptide repeat-like domain TPR_3 PF07720.12 gi|20091079|ref|NP_617154.1| - 0.093 12.7 11.7 0.94 9.5 0.0 5.1 7 0 0 7 7 5 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20091079|ref|NP_617154.1| - 0.099 13.1 3.1 83 3.9 0.1 5.6 6 1 0 6 6 5 0 Tetratricopeptide repeat DUF3336 PF11815.8 gi|20091079|ref|NP_617154.1| - 0.099 12.4 0.1 0.35 10.6 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3336) DUF1107 PF06526.12 gi|20091079|ref|NP_617154.1| - 0.12 12.3 0.8 19 5.2 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1107) HTH_Bact PF18768.1 gi|20091079|ref|NP_617154.1| - 1.9 8.2 5.4 4.6 6.9 0.1 4.0 3 1 1 4 4 4 0 Helix-turn-helix bacterial domain T3SS_needle_F PF09392.10 gi|20091080|ref|NP_617155.1| - 0.0002 21.5 1.1 0.66 10.2 0.1 2.4 2 0 0 2 2 2 2 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF FAST_2 PF08368.12 gi|20091080|ref|NP_617155.1| - 0.13 13.0 0.0 0.22 12.3 0.0 1.3 1 0 0 1 1 1 0 FAST kinase-like protein, subdomain 2 MULE PF10551.9 gi|20091082|ref|NP_617157.1| - 6.5e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091082|ref|NP_617157.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091082|ref|NP_617157.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091082|ref|NP_617157.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091082|ref|NP_617157.1| - 0.044 13.6 0.9 0.12 12.3 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20091082|ref|NP_617157.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20091082|ref|NP_617157.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091082|ref|NP_617157.1| - 0.07 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091082|ref|NP_617157.1| - 0.19 11.8 3.5 0.44 10.6 3.5 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091082|ref|NP_617157.1| - 0.24 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20091082|ref|NP_617157.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger TPR_12 PF13424.6 gi|20091083|ref|NP_617158.1| - 4.3e-36 123.1 11.0 6e-17 61.7 0.3 4.2 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20091083|ref|NP_617158.1| - 4.6e-35 118.0 21.8 9.2e-08 31.6 0.6 5.7 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091083|ref|NP_617158.1| - 2.5e-34 114.8 8.1 5.5e-07 29.2 0.2 6.5 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20091083|ref|NP_617158.1| - 1.6e-28 96.4 15.9 2.9e-06 27.1 0.4 5.8 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091083|ref|NP_617158.1| - 1.3e-27 93.7 17.0 8.6e-06 25.5 0.9 5.4 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20091083|ref|NP_617158.1| - 2e-21 75.1 6.7 7.7e-05 22.4 0.5 5.6 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091083|ref|NP_617158.1| - 1.2e-12 47.3 19.8 0.0011 18.5 0.5 6.0 6 0 0 6 6 6 4 TPR repeat TPR_MalT PF17874.1 gi|20091083|ref|NP_617158.1| - 9.8e-12 44.9 0.4 5.6e-07 29.2 0.0 3.2 1 1 3 4 4 4 3 MalT-like TPR region TPR_6 PF13174.6 gi|20091083|ref|NP_617158.1| - 2.2e-11 43.6 11.9 0.056 14.1 0.4 5.6 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20091083|ref|NP_617158.1| - 5.9e-11 42.2 2.1 0.2 12.5 0.1 5.2 6 0 0 6 6 5 2 Tetratricopeptide repeat Rapsyn_N PF10579.9 gi|20091083|ref|NP_617158.1| - 3.7e-09 36.6 2.5 0.0017 18.4 0.1 3.6 3 0 0 3 3 3 2 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.6 gi|20091083|ref|NP_617158.1| - 5.9e-08 32.5 2.1 4.8e-06 26.2 0.3 2.7 1 1 2 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_3 PF07720.12 gi|20091083|ref|NP_617158.1| - 1.4e-06 28.2 12.1 0.17 11.9 0.2 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat DUF2225 PF09986.9 gi|20091083|ref|NP_617158.1| - 3.8e-06 26.8 1.1 0.00019 21.2 0.3 2.9 1 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_9 PF13371.6 gi|20091083|ref|NP_617158.1| - 4e-06 26.9 0.9 0.097 12.8 0.0 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20091083|ref|NP_617158.1| - 1.3e-05 25.7 5.1 0.005 17.5 1.0 4.1 4 1 0 4 4 3 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|20091083|ref|NP_617158.1| - 3.2e-05 23.3 0.8 0.61 9.2 0.0 3.8 2 1 2 4 4 4 2 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|20091083|ref|NP_617158.1| - 0.00013 22.0 0.0 33 4.6 0.0 4.8 4 1 1 5 5 5 0 Anaphase-promoting complex subunit 5 TPR_19 PF14559.6 gi|20091083|ref|NP_617158.1| - 0.0023 18.4 8.0 0.65 10.6 0.6 4.7 3 2 2 5 5 5 1 Tetratricopeptide repeat DUF4810 PF16068.5 gi|20091083|ref|NP_617158.1| - 0.0025 18.3 6.5 0.44 11.1 0.0 4.6 4 2 1 5 5 5 1 Domain of unknown function (DUF4810) DUF3856 PF12968.7 gi|20091083|ref|NP_617158.1| - 0.0035 17.4 3.9 0.19 11.8 0.2 3.4 2 2 2 4 4 4 1 Domain of Unknown Function (DUF3856) RPN7 PF10602.9 gi|20091083|ref|NP_617158.1| - 0.0036 17.0 7.6 2.3 7.9 0.2 4.3 1 1 3 5 5 5 1 26S proteasome subunit RPN7 MIT PF04212.18 gi|20091083|ref|NP_617158.1| - 0.0037 17.3 14.2 3.7 7.7 0.0 5.4 4 2 1 5 5 5 2 MIT (microtubule interacting and transport) domain Sel1 PF08238.12 gi|20091083|ref|NP_617158.1| - 0.011 16.4 8.0 3 8.6 0.1 4.7 5 0 0 5 5 4 0 Sel1 repeat Terpene_synth PF01397.21 gi|20091083|ref|NP_617158.1| - 0.064 12.9 1.3 4.1 7.0 0.2 2.9 2 2 0 2 2 2 0 Terpene synthase, N-terminal domain NSF PF02071.20 gi|20091083|ref|NP_617158.1| - 0.14 12.9 10.4 3.9 8.7 0.4 4.4 4 0 0 4 4 3 0 Aromatic-di-Alanine (AdAR) repeat Fis1_TPR_C PF14853.6 gi|20091083|ref|NP_617158.1| - 0.3 11.2 2.2 11 6.2 0.0 3.6 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat PPR PF01535.20 gi|20091083|ref|NP_617158.1| - 0.8 10.1 12.3 21 5.7 0.0 5.9 7 0 0 7 7 7 0 PPR repeat BTAD PF03704.17 gi|20091083|ref|NP_617158.1| - 0.94 9.9 4.4 17 5.8 0.3 3.6 2 2 1 3 3 3 0 Bacterial transcriptional activator domain TPR_17 PF13431.6 gi|20091083|ref|NP_617158.1| - 2.9 8.5 8.4 1.4e+02 3.2 0.0 5.5 5 1 1 6 6 5 0 Tetratricopeptide repeat AMP-binding_C_2 PF14535.6 gi|20091084|ref|NP_617159.1| - 7.6e-29 99.9 0.8 1.5e-28 98.9 0.4 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|20091084|ref|NP_617159.1| - 2.5e-16 59.3 0.1 1.4e-15 56.9 0.1 1.9 1 1 0 1 1 1 1 AMP-binding enzyme UPF0565 PF10561.9 gi|20091084|ref|NP_617159.1| - 0.14 11.3 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0565 Fer4 PF00037.27 gi|20091085|ref|NP_617160.1| - 1.2e-07 31.3 20.9 6.1e-05 22.7 7.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20091085|ref|NP_617160.1| - 2.3e-06 27.6 18.7 2.7e-06 27.4 18.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20091085|ref|NP_617160.1| - 6e-06 26.0 16.0 2e-05 24.4 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20091085|ref|NP_617160.1| - 1.8e-05 24.6 20.5 0.00097 19.1 6.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091085|ref|NP_617160.1| - 2.9e-05 24.1 17.0 3.9e-05 23.7 17.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091085|ref|NP_617160.1| - 0.00014 21.9 16.7 0.00023 21.2 16.7 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20091085|ref|NP_617160.1| - 0.00073 20.1 16.7 0.021 15.4 5.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091085|ref|NP_617160.1| - 0.0021 19.0 14.8 0.1 13.6 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|20091085|ref|NP_617160.1| - 0.005 17.3 13.5 0.024 15.1 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20091085|ref|NP_617160.1| - 0.069 13.7 7.5 0.069 13.7 7.5 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20091085|ref|NP_617160.1| - 0.14 13.0 5.3 0.14 13.0 5.3 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20091085|ref|NP_617160.1| - 0.19 12.3 18.7 0.18 12.4 4.9 2.1 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20091085|ref|NP_617160.1| - 1.3 9.2 13.5 1.8 8.8 13.5 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Serpin PF00079.20 gi|20091086|ref|NP_617161.1| - 3.1e-118 395.3 2.2 3.7e-118 395.1 2.2 1.1 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DUF3795 PF12675.7 gi|20091087|ref|NP_617162.1| - 9.8e-10 38.7 25.4 1.4e-09 38.2 16.6 3.1 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) zf-C3HC4_3 PF13920.6 gi|20091087|ref|NP_617162.1| - 0.0014 18.4 2.8 0.0014 18.4 2.8 3.3 3 1 0 3 3 3 2 Zinc finger, C3HC4 type (RING finger) GUN4 PF05419.12 gi|20091087|ref|NP_617162.1| - 0.03 14.4 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 GUN4-like zf-C3HC4_2 PF13923.6 gi|20091087|ref|NP_617162.1| - 0.033 14.0 1.7 0.033 14.0 1.7 3.6 3 2 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-RING_2 PF13639.6 gi|20091087|ref|NP_617162.1| - 0.037 14.4 1.3 0.037 14.4 1.3 3.4 3 0 0 3 3 3 0 Ring finger domain DZR PF12773.7 gi|20091087|ref|NP_617162.1| - 0.54 10.3 23.0 0.58 10.2 2.1 3.2 2 1 1 3 3 3 0 Double zinc ribbon HypA PF01155.19 gi|20091087|ref|NP_617162.1| - 0.68 10.0 19.0 0.022 14.7 7.1 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NnrU PF07298.11 gi|20091088|ref|NP_617163.1| - 8.4e-08 32.0 3.3 1.3e-07 31.4 3.3 1.2 1 0 0 1 1 1 1 NnrU protein PEMT PF04191.13 gi|20091088|ref|NP_617163.1| - 0.0016 18.8 2.1 0.0022 18.3 0.8 2.0 1 1 1 2 2 2 1 Phospholipid methyltransferase Peptidase_S32 PF05579.13 gi|20091089|ref|NP_617164.1| - 0.0082 15.4 0.0 0.013 14.7 0.0 1.3 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Peptidase_S55 PF05580.12 gi|20091089|ref|NP_617164.1| - 0.047 13.6 0.2 0.095 12.6 0.2 1.4 1 0 0 1 1 1 0 SpoIVB peptidase S55 LPG_synthase_TM PF03706.13 gi|20091090|ref|NP_617165.1| - 3.9e-20 72.6 39.7 5e-20 72.2 39.7 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Spc110_C PF18520.1 gi|20091090|ref|NP_617165.1| - 0.13 11.9 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Spindle pole body component 110 C-terminal domain DUF1294 PF06961.13 gi|20091091|ref|NP_617166.1| - 7.8e-23 80.5 0.1 1.2e-22 79.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) Inos-1-P_synth PF01658.17 gi|20091092|ref|NP_617167.1| - 2.1e-32 111.6 0.0 3.9e-32 110.7 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|20091092|ref|NP_617167.1| - 0.00051 19.5 0.0 0.00088 18.7 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase TPR_12 PF13424.6 gi|20091093|ref|NP_617168.1| - 3.9e-117 382.7 31.3 2.1e-24 85.6 0.3 6.3 4 2 4 8 8 7 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20091093|ref|NP_617168.1| - 4.2e-82 268.1 15.2 2e-12 46.5 0.1 9.6 10 0 0 10 10 9 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20091093|ref|NP_617168.1| - 4.7e-54 178.1 25.9 6.7e-08 32.0 0.3 8.4 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091093|ref|NP_617168.1| - 3.2e-43 142.6 17.6 1.8e-07 30.7 0.0 9.0 9 0 0 9 9 9 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091093|ref|NP_617168.1| - 3.3e-42 139.2 25.4 2.3e-05 24.2 0.2 8.5 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20091093|ref|NP_617168.1| - 1.4e-36 121.6 24.8 0.00037 20.5 0.1 8.8 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091093|ref|NP_617168.1| - 1.5e-21 75.8 16.3 0.00037 20.1 0.1 7.7 7 0 0 7 7 7 5 TPR repeat TPR_16 PF13432.6 gi|20091093|ref|NP_617168.1| - 3.7e-19 69.1 4.8 9.6e-06 26.1 0.2 6.9 4 3 2 6 6 6 4 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20091093|ref|NP_617168.1| - 2.2e-17 63.4 1.8 2.7e-05 23.7 2.4 3.4 1 1 2 3 3 3 3 MalT-like TPR region TPR_14 PF13428.6 gi|20091093|ref|NP_617168.1| - 7.8e-17 60.5 8.2 0.11 13.4 0.0 7.9 5 3 3 8 8 7 3 Tetratricopeptide repeat SNAP PF14938.6 gi|20091093|ref|NP_617168.1| - 6.4e-14 52.0 0.0 3e-05 23.6 0.3 3.2 3 0 0 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_19 PF14559.6 gi|20091093|ref|NP_617168.1| - 3.7e-12 46.6 13.7 0.062 13.8 0.1 6.2 2 2 4 7 7 7 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20091093|ref|NP_617168.1| - 2.1e-10 40.2 14.9 0.0075 16.6 0.0 8.5 9 2 1 10 10 8 2 Tetratricopeptide repeat MIT PF04212.18 gi|20091093|ref|NP_617168.1| - 3.4e-09 36.6 19.8 0.081 13.0 0.0 7.9 4 1 4 8 8 8 2 MIT (microtubule interacting and transport) domain DUF2225 PF09986.9 gi|20091093|ref|NP_617168.1| - 7.2e-09 35.7 4.7 0.005 16.6 0.0 4.2 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2225) TPR_6 PF13174.6 gi|20091093|ref|NP_617168.1| - 1.2e-07 31.9 18.2 3 8.7 0.1 8.4 8 0 0 8 8 8 1 Tetratricopeptide repeat 14-3-3 PF00244.20 gi|20091093|ref|NP_617168.1| - 1.1e-06 28.3 4.2 0.074 12.5 0.0 4.6 3 1 3 6 6 6 2 14-3-3 protein RNA_pol_Rpb6 PF01192.22 gi|20091093|ref|NP_617168.1| - 2e-06 27.6 0.1 0.096 12.6 0.0 3.1 3 0 0 3 3 2 2 RNA polymerase Rpb6 SHNi-TPR PF10516.9 gi|20091093|ref|NP_617168.1| - 1.3e-05 24.5 12.4 0.041 13.3 0.0 7.3 8 0 0 8 8 8 1 SHNi-TPR RPN7 PF10602.9 gi|20091093|ref|NP_617168.1| - 1.3e-05 24.9 6.4 8.7 6.0 0.0 6.1 3 2 3 6 6 6 0 26S proteasome subunit RPN7 ANAPC3 PF12895.7 gi|20091093|ref|NP_617168.1| - 1.6e-05 25.0 7.6 0.31 11.3 0.2 5.4 2 1 3 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.12 gi|20091093|ref|NP_617168.1| - 5.2e-05 23.1 5.5 8.1 6.6 0.0 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat PPR PF01535.20 gi|20091093|ref|NP_617168.1| - 0.00024 21.1 11.0 0.41 11.0 0.0 7.1 8 0 0 8 8 7 1 PPR repeat TPR_9 PF13371.6 gi|20091093|ref|NP_617168.1| - 0.00033 20.7 1.7 2.4 8.4 0.0 5.0 3 3 3 6 6 6 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|20091093|ref|NP_617168.1| - 0.00066 19.8 1.2 2.7 8.1 0.0 4.3 5 0 0 5 5 5 1 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|20091093|ref|NP_617168.1| - 0.002 17.9 3.5 5.2 6.7 0.2 4.3 2 1 3 5 5 5 0 Tetratricopeptide repeat-like domain TPR_5 PF12688.7 gi|20091093|ref|NP_617168.1| - 0.0024 18.1 4.4 4 7.7 0.0 5.5 5 2 1 6 6 5 1 Tetratrico peptide repeat ComR_TPR PF18710.1 gi|20091093|ref|NP_617168.1| - 0.0042 16.7 0.6 0.039 13.5 0.8 2.4 2 1 0 2 2 2 1 ComR tetratricopeptide Sel1 PF08238.12 gi|20091093|ref|NP_617168.1| - 0.0044 17.7 8.2 15 6.5 0.0 6.2 7 0 0 7 7 5 0 Sel1 repeat RPN6_N PF18055.1 gi|20091093|ref|NP_617168.1| - 0.014 15.7 3.6 1.2 9.5 0.5 3.6 2 1 1 3 3 3 0 26S proteasome regulatory subunit RPN6 N-terminal domain TAtT PF16811.5 gi|20091093|ref|NP_617168.1| - 0.016 14.5 4.2 3.7 6.8 0.1 5.0 1 1 5 6 6 6 0 TRAP transporter T-component TPR_20 PF14561.6 gi|20091093|ref|NP_617168.1| - 0.018 15.4 0.5 19 5.7 0.0 3.7 4 2 1 5 5 2 0 Tetratricopeptide repeat DUF4404 PF14357.6 gi|20091093|ref|NP_617168.1| - 0.069 13.8 1.2 2.8 8.6 0.1 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF4404) SPO22 PF08631.10 gi|20091093|ref|NP_617168.1| - 0.076 12.5 0.9 7.7 5.9 0.6 2.8 2 1 1 3 3 3 0 Meiosis protein SPO22/ZIP4 like PPR_2 PF13041.6 gi|20091093|ref|NP_617168.1| - 0.19 12.0 1.6 21 5.4 0.0 4.1 5 0 0 5 5 3 0 PPR repeat family HHH_8 PF14716.6 gi|20091093|ref|NP_617168.1| - 0.27 11.6 4.6 82 3.7 0.0 4.9 5 1 0 6 6 3 0 Helix-hairpin-helix domain Vps39_1 PF10366.9 gi|20091093|ref|NP_617168.1| - 0.37 11.1 8.5 3.5 7.9 0.1 4.9 2 2 4 6 6 6 0 Vacuolar sorting protein 39 domain 1 Response_reg PF00072.24 gi|20091094|ref|NP_617169.1| - 1.2e-25 89.8 0.0 1.4e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|20091095|ref|NP_617170.1| - 1.9e-37 127.9 4.9 9.5e-18 64.4 0.1 2.6 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 gi|20091095|ref|NP_617170.1| - 1.6e-30 105.9 0.1 3.8e-30 104.7 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20091095|ref|NP_617170.1| - 2.4e-17 62.7 0.1 8e-17 61.0 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|20091095|ref|NP_617170.1| - 5e-15 55.1 0.0 2e-06 27.7 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 gi|20091095|ref|NP_617170.1| - 1.5e-14 54.1 0.1 1.9e-06 28.1 0.1 3.2 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|20091095|ref|NP_617170.1| - 2.9e-12 46.6 0.2 8.2e-07 29.0 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|20091095|ref|NP_617170.1| - 3.4e-09 36.9 0.0 1.9e-07 31.3 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|20091095|ref|NP_617170.1| - 4e-05 23.8 0.0 0.02 15.1 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.6 gi|20091095|ref|NP_617170.1| - 0.034 14.0 0.0 0.08 12.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20091095|ref|NP_617170.1| - 0.099 12.6 0.0 0.38 10.7 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain TaqI_C PF12950.7 gi|20091096|ref|NP_617171.1| - 0.0033 17.5 2.1 0.0041 17.2 0.2 2.1 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain ALMS_motif PF15309.6 gi|20091096|ref|NP_617171.1| - 0.028 14.9 1.4 0.058 13.9 0.3 1.9 2 0 0 2 2 2 0 ALMS motif DUF72 PF01904.18 gi|20091097|ref|NP_617172.1| - 1.5e-34 120.0 0.7 1.8e-34 119.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF3795 PF12675.7 gi|20091099|ref|NP_617174.1| - 1.6e-14 54.1 13.6 2.3e-14 53.6 13.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) DUF2173 PF09941.9 gi|20091101|ref|NP_617176.1| - 1.8e-33 115.0 0.5 2e-33 114.8 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) Robl_LC7 PF03259.17 gi|20091101|ref|NP_617176.1| - 0.028 14.2 0.0 0.041 13.6 0.0 1.2 1 0 0 1 1 1 0 Roadblock/LC7 domain Proteasome_A_N PF10584.9 gi|20091101|ref|NP_617176.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature MFS_1 PF07690.16 gi|20091102|ref|NP_617177.1| - 3e-30 105.3 62.9 7.6e-28 97.4 31.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|20091102|ref|NP_617177.1| - 2.9e-12 45.8 8.4 4.4e-12 45.2 8.4 1.3 1 1 0 1 1 1 1 Transmembrane secretion effector UDG PF03167.19 gi|20091103|ref|NP_617178.1| - 2.1e-07 31.1 0.0 2.5e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HisKA_2 PF07568.12 gi|20091104|ref|NP_617179.1| - 6.7e-32 109.4 0.8 1.6e-31 108.2 0.8 1.7 1 0 0 1 1 1 1 Histidine kinase GAF_3 PF13492.6 gi|20091104|ref|NP_617179.1| - 9.2e-27 93.9 0.0 2e-26 92.8 0.0 1.6 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|20091104|ref|NP_617179.1| - 4.5e-13 49.2 0.0 1.6e-08 34.5 0.0 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|20091104|ref|NP_617179.1| - 4.1e-11 43.4 0.1 1.2e-10 41.8 0.1 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|20091104|ref|NP_617179.1| - 1.3e-10 41.5 0.0 9.5e-09 35.5 0.0 2.5 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|20091104|ref|NP_617179.1| - 1.1e-06 29.0 0.0 2.2e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|20091104|ref|NP_617179.1| - 3e-06 27.9 0.0 5.7e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|20091104|ref|NP_617179.1| - 0.00012 22.3 0.0 0.0015 18.8 0.0 2.7 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.14 gi|20091104|ref|NP_617179.1| - 0.00044 20.9 0.1 0.0012 19.5 0.1 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20091104|ref|NP_617179.1| - 0.00086 19.3 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|20091104|ref|NP_617179.1| - 0.01 16.1 0.0 0.027 14.7 0.0 1.7 1 0 0 1 1 1 0 PAS fold NDC10_II PF16787.5 gi|20091105|ref|NP_617180.1| - 0.15 11.0 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 Centromere DNA-binding protein complex CBF3 subunit, domain 2 HhH-GPD PF00730.25 gi|20091106|ref|NP_617181.1| - 1.3e-17 64.2 0.0 1.8e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|20091106|ref|NP_617181.1| - 4.2e-07 29.5 0.0 9.2e-07 28.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|20091106|ref|NP_617181.1| - 0.0034 17.9 0.1 0.022 15.3 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|20091106|ref|NP_617181.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif RanGAP1_C PF07834.11 gi|20091106|ref|NP_617181.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 RanGAP1 C-terminal domain PsiE PF06146.12 gi|20091108|ref|NP_617183.1| - 6.2e-11 42.5 6.1 6.2e-11 42.5 6.1 2.0 2 1 0 2 2 2 1 Phosphate-starvation-inducible E DUF3397 PF11877.8 gi|20091108|ref|NP_617183.1| - 0.03 14.5 3.6 0.03 14.5 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3397) Phage_Coat_Gp8 PF05371.12 gi|20091108|ref|NP_617183.1| - 0.22 11.3 1.7 1.2 9.0 0.4 2.3 2 0 0 2 2 2 0 Phage major coat protein, Gp8 DUF3852 PF12963.7 gi|20091108|ref|NP_617183.1| - 1.6 9.1 7.7 0.44 10.9 0.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3852) OAD_gamma PF04277.13 gi|20091108|ref|NP_617183.1| - 6.1 7.5 8.6 22 5.7 0.0 3.0 3 0 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain Nitroreductase PF00881.24 gi|20091109|ref|NP_617184.1| - 8e-11 42.3 0.2 3.7e-07 30.3 0.1 2.6 2 1 0 2 2 2 2 Nitroreductase family MacB_PCD PF12704.7 gi|20091110|ref|NP_617185.1| - 1.7e-29 103.6 0.4 1.7e-29 103.6 0.4 3.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20091110|ref|NP_617185.1| - 1.9e-14 53.9 8.4 1.9e-14 53.9 8.4 3.1 3 0 0 3 3 3 1 FtsX-like permease family DUF4064 PF13273.6 gi|20091110|ref|NP_617185.1| - 0.039 14.2 20.6 2.1 8.7 0.2 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF4064) Yip1 PF04893.17 gi|20091110|ref|NP_617185.1| - 1.2 8.8 12.3 3.3 7.4 8.7 2.2 2 0 0 2 2 2 0 Yip1 domain LptF_LptG PF03739.14 gi|20091110|ref|NP_617185.1| - 1.3 7.8 8.2 0.23 10.3 2.9 2.3 2 1 1 3 3 3 0 Lipopolysaccharide export system permease LptF/LptG NPCBM_assoc PF10633.9 gi|20091111|ref|NP_617186.1| - 1.6e-07 31.4 0.0 0.039 14.2 0.0 3.4 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|20091111|ref|NP_617186.1| - 7.3e-05 23.0 4.3 0.26 11.6 0.2 3.6 2 1 2 4 4 4 2 CARDB DUF2393 PF09624.10 gi|20091111|ref|NP_617186.1| - 0.02 14.9 0.1 3.8 7.5 0.0 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2393) Y_Y_Y PF07495.13 gi|20091111|ref|NP_617186.1| - 0.037 14.0 2.9 9.3 6.3 0.1 3.9 3 1 1 4 4 4 0 Y_Y_Y domain DUF5006 PF16397.5 gi|20091111|ref|NP_617186.1| - 0.047 12.9 0.2 0.12 11.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5006) DUF4397 PF14344.6 gi|20091111|ref|NP_617186.1| - 0.15 12.8 0.7 1.2 10.0 0.5 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4397) ABC_tran PF00005.27 gi|20091113|ref|NP_617188.1| - 3.3e-34 118.3 0.1 5e-34 117.7 0.1 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20091113|ref|NP_617188.1| - 3.1e-06 26.8 0.7 7.8e-05 22.2 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20091113|ref|NP_617188.1| - 1.4e-05 25.6 0.0 3.3e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20091113|ref|NP_617188.1| - 4.4e-05 23.1 0.1 9.6e-05 22.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20091113|ref|NP_617188.1| - 0.0016 18.4 0.1 0.0032 17.4 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|20091113|ref|NP_617188.1| - 0.0021 18.6 0.7 0.0067 17.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|20091113|ref|NP_617188.1| - 0.0049 16.7 0.1 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20091113|ref|NP_617188.1| - 0.0061 16.8 1.0 0.042 14.1 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|20091113|ref|NP_617188.1| - 0.0074 16.0 0.1 0.07 12.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|20091113|ref|NP_617188.1| - 0.015 15.0 0.6 0.061 13.0 0.1 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.7 gi|20091113|ref|NP_617188.1| - 0.016 14.2 0.0 0.14 11.0 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.6 gi|20091113|ref|NP_617188.1| - 0.04 13.5 0.2 0.28 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.6 gi|20091113|ref|NP_617188.1| - 0.11 11.5 0.3 0.18 10.8 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) HTH_3 PF01381.22 gi|20091114|ref|NP_617189.1| - 5.8e-16 58.3 0.1 7e-16 58.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|20091114|ref|NP_617189.1| - 1.8e-08 34.6 0.0 2.1e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|20091114|ref|NP_617189.1| - 3.9e-08 33.2 0.1 4.4e-08 33.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|20091114|ref|NP_617189.1| - 8.3e-07 29.3 0.0 1e-06 29.0 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|20091114|ref|NP_617189.1| - 0.0051 16.8 0.0 0.0089 16.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|20091114|ref|NP_617189.1| - 0.028 14.3 0.1 0.042 13.7 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|20091114|ref|NP_617189.1| - 0.031 14.2 0.0 0.041 13.8 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|20091114|ref|NP_617189.1| - 0.12 12.4 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Phage_CI_repr PF07022.13 gi|20091114|ref|NP_617189.1| - 0.16 12.1 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF1129 PF06570.11 gi|20091115|ref|NP_617190.1| - 0.095 12.2 7.6 0.11 12.0 7.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) TMEM100 PF16311.5 gi|20091115|ref|NP_617190.1| - 0.28 10.8 1.3 0.63 9.6 1.3 1.6 1 1 0 1 1 1 0 Transmembrane protein 100 DUF4190 PF13828.6 gi|20091115|ref|NP_617190.1| - 0.41 10.4 8.1 0.13 12.1 2.6 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) Orai-1 PF07856.12 gi|20091115|ref|NP_617190.1| - 0.45 10.2 12.5 0.84 9.3 4.5 2.1 2 0 0 2 2 2 0 Mediator of CRAC channel activity Cation_ATPase_C PF00689.21 gi|20091115|ref|NP_617190.1| - 1.4 8.5 11.0 2.7 7.7 11.0 1.5 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF1189 PF06691.11 gi|20091115|ref|NP_617190.1| - 1.5 8.4 10.7 1.3 8.6 2.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1189) DUF1616 PF07760.11 gi|20091115|ref|NP_617190.1| - 2.3 7.5 6.9 0.13 11.7 0.9 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF1616) Pirin_C PF05726.13 gi|20091116|ref|NP_617191.1| - 4.8e-38 129.7 0.0 1.7e-36 124.7 0.0 2.3 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Pirin PF02678.16 gi|20091116|ref|NP_617191.1| - 4e-37 126.5 0.1 6.9e-37 125.7 0.1 1.4 1 0 0 1 1 1 1 Pirin Cupin_2 PF07883.11 gi|20091116|ref|NP_617191.1| - 0.00012 21.7 1.0 0.017 14.8 0.1 3.0 3 0 0 3 3 3 1 Cupin domain Cupin_3 PF05899.12 gi|20091116|ref|NP_617191.1| - 0.029 14.1 0.3 0.26 11.0 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF861) Virul_fac_BrkB PF03631.15 gi|20091117|ref|NP_617192.1| - 5.7e-53 180.2 19.0 6.4e-53 180.0 19.0 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Abhydrolase_9_N PF15420.6 gi|20091117|ref|NP_617192.1| - 1.6 8.6 4.7 0.65 10.0 1.3 2.0 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus SBP_bac_11 PF13531.6 gi|20091118|ref|NP_617193.1| - 1.1e-55 188.9 0.1 1.3e-55 188.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|20091118|ref|NP_617193.1| - 2.8e-22 80.1 0.3 1.7e-10 41.4 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|20091118|ref|NP_617193.1| - 2.2e-06 27.6 0.6 6.7e-05 22.7 0.1 2.0 1 1 0 2 2 2 1 PBP superfamily domain SBP_bac_6 PF13343.6 gi|20091118|ref|NP_617193.1| - 3.7e-06 26.6 0.0 5.7e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|20091118|ref|NP_617193.1| - 1.2e-05 25.3 0.1 0.004 17.0 0.1 2.2 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|20091118|ref|NP_617193.1| - 1.6e-05 24.7 0.0 2.4e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 gi|20091118|ref|NP_617193.1| - 0.0011 18.1 0.0 0.0061 15.7 0.0 1.9 2 0 0 2 2 2 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|20091119|ref|NP_617194.1| - 1.1e-20 74.2 15.5 1.1e-20 74.2 15.5 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GNAT_acetyltran PF12746.7 gi|20091119|ref|NP_617194.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 GNAT acetyltransferase ABC_tran PF00005.27 gi|20091120|ref|NP_617195.1| - 2e-33 115.8 0.0 4.4e-33 114.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20091120|ref|NP_617195.1| - 1.7e-07 31.3 4.4 0.00037 20.4 0.2 2.8 2 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20091120|ref|NP_617195.1| - 1.9e-07 30.8 0.1 2e-06 27.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20091120|ref|NP_617195.1| - 8.1e-06 26.5 0.8 1.3e-05 25.8 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20091120|ref|NP_617195.1| - 0.00064 20.0 0.7 0.014 15.7 0.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20091120|ref|NP_617195.1| - 0.0011 18.7 0.1 0.0055 16.4 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20091120|ref|NP_617195.1| - 0.0025 17.7 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 gi|20091120|ref|NP_617195.1| - 0.0069 16.6 0.7 0.52 10.6 0.4 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|20091120|ref|NP_617195.1| - 0.012 15.6 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TOBE_2 PF08402.10 gi|20091120|ref|NP_617195.1| - 0.015 15.5 0.0 0.053 13.7 0.0 2.0 2 0 0 2 2 2 0 TOBE domain AAA_16 PF13191.6 gi|20091120|ref|NP_617195.1| - 0.022 15.1 0.0 0.054 13.9 0.0 1.6 2 0 0 2 2 1 0 AAA ATPase domain AAA PF00004.29 gi|20091120|ref|NP_617195.1| - 0.033 14.6 0.2 0.17 12.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|20091120|ref|NP_617195.1| - 0.073 13.2 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|20091120|ref|NP_617195.1| - 0.075 12.2 0.2 0.21 10.8 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.17 gi|20091120|ref|NP_617195.1| - 0.091 12.5 0.1 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|20091120|ref|NP_617195.1| - 0.11 11.9 0.0 0.31 10.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|20091120|ref|NP_617195.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|20091120|ref|NP_617195.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TOBE PF03459.17 gi|20091120|ref|NP_617195.1| - 0.15 12.4 0.0 0.86 9.9 0.0 2.1 2 0 0 2 2 2 0 TOBE domain TsaE PF02367.17 gi|20091120|ref|NP_617195.1| - 0.16 12.0 0.0 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|20091120|ref|NP_617195.1| - 0.18 12.3 1.0 0.72 10.4 0.5 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|20091120|ref|NP_617195.1| - 0.27 11.5 0.5 1.6 8.9 0.3 2.3 2 0 0 2 2 2 0 AAA domain Isochorismatase PF00857.20 gi|20091121|ref|NP_617196.1| - 1.2e-39 136.3 0.1 1.4e-39 136.1 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family PKD PF00801.20 gi|20091122|ref|NP_617197.1| - 4.6e-05 23.2 0.3 0.00012 21.8 0.3 1.7 1 0 0 1 1 1 1 PKD domain PGF-CTERM PF18204.1 gi|20091122|ref|NP_617197.1| - 0.002 18.0 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 PGF-CTERM motif ComJ PF11033.8 gi|20091122|ref|NP_617197.1| - 0.059 13.1 0.1 0.16 11.7 0.1 1.7 1 0 0 1 1 1 0 Competence protein J (ComJ) DUF928 PF06051.12 gi|20091122|ref|NP_617197.1| - 1.1 9.1 8.5 16 5.3 0.0 5.5 4 1 1 6 6 6 0 Domain of Unknown Function (DUF928) MscL PF01741.18 gi|20091123|ref|NP_617198.1| - 1.8e-21 76.7 4.4 2e-21 76.5 4.4 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL Saf_2TM PF18303.1 gi|20091123|ref|NP_617198.1| - 0.058 13.0 0.9 0.065 12.8 0.9 1.1 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain AA_permease_2 PF13520.6 gi|20091124|ref|NP_617199.1| - 4.4e-34 118.0 44.2 8.3e-34 117.1 44.2 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|20091124|ref|NP_617199.1| - 1.9e-27 96.0 38.9 3.1e-27 95.3 38.9 1.2 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|20091124|ref|NP_617199.1| - 2e-10 40.0 9.9 2e-10 40.0 9.9 2.1 2 0 0 2 2 2 1 Spore germination protein Npa1 PF11707.8 gi|20091125|ref|NP_617200.1| - 0.3 10.4 0.0 0.43 9.9 0.0 1.1 1 0 0 1 1 1 0 Ribosome 60S biogenesis N-terminal CMD PF02627.20 gi|20091127|ref|NP_617202.1| - 4e-14 52.4 0.1 4.4e-14 52.3 0.1 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family SoxZ PF08770.11 gi|20091127|ref|NP_617202.1| - 0.16 11.7 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Sulphur oxidation protein SoxZ DUF1330 PF07045.11 gi|20091128|ref|NP_617203.1| - 2.7e-20 72.5 0.0 3e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) DUF1563 PF07599.11 gi|20091128|ref|NP_617203.1| - 0.079 13.1 1.4 2.1 8.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1563) CTP_transf_like PF01467.26 gi|20091128|ref|NP_617203.1| - 0.19 11.9 0.0 0.21 11.8 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase-like Aldo_ket_red PF00248.21 gi|20091129|ref|NP_617204.1| - 3.5e-41 141.3 0.0 1.3e-39 136.2 0.0 2.1 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|20091129|ref|NP_617204.1| - 5.6e-11 42.8 7.1 1.3e-10 41.6 7.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091129|ref|NP_617204.1| - 2.4e-10 40.4 7.3 4.4e-10 39.6 7.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20091129|ref|NP_617204.1| - 0.00013 22.0 6.8 0.012 15.8 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20091129|ref|NP_617204.1| - 0.00026 21.4 9.3 0.00084 19.7 9.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20091129|ref|NP_617204.1| - 0.00063 19.9 1.4 0.32 11.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20091129|ref|NP_617204.1| - 0.0011 18.7 2.1 0.0011 18.7 2.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091129|ref|NP_617204.1| - 0.0015 18.6 13.6 0.0065 16.6 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091129|ref|NP_617204.1| - 0.0018 19.2 3.8 0.041 14.8 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|20091129|ref|NP_617204.1| - 0.0038 17.0 0.5 0.0038 17.0 0.5 2.2 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|20091129|ref|NP_617204.1| - 0.017 15.9 3.0 1.2 10.0 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DHDPS PF00701.22 gi|20091129|ref|NP_617204.1| - 0.04 12.6 0.0 0.064 12.0 0.0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family Fer4_7 PF12838.7 gi|20091129|ref|NP_617204.1| - 0.12 13.0 13.9 0.9 10.2 14.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain PA_decarbox PF05870.11 gi|20091129|ref|NP_617204.1| - 0.12 12.0 0.1 1.6 8.3 0.0 2.3 2 1 0 2 2 2 0 Phenolic acid decarboxylase (PAD) Fer4_3 PF12798.7 gi|20091129|ref|NP_617204.1| - 1.5 10.0 16.8 0.45 11.6 6.4 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20091129|ref|NP_617204.1| - 2.9 8.6 15.6 0.66 10.6 5.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|20091129|ref|NP_617204.1| - 8.3 7.0 8.7 0.37 11.4 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Aldo_ket_red PF00248.21 gi|20091130|ref|NP_617205.1| - 8.4e-42 143.4 0.0 1.6e-40 139.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|20091130|ref|NP_617205.1| - 5.4e-12 46.1 9.4 1.1e-11 45.1 9.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091130|ref|NP_617205.1| - 9.4e-07 28.9 10.4 2e-06 27.9 10.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|20091130|ref|NP_617205.1| - 0.00053 19.7 0.1 0.00053 19.7 0.1 1.8 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PA_decarbox PF05870.11 gi|20091130|ref|NP_617205.1| - 0.0011 18.7 0.0 0.56 9.8 0.0 2.3 2 0 0 2 2 2 2 Phenolic acid decarboxylase (PAD) Fer4_18 PF13746.6 gi|20091130|ref|NP_617205.1| - 0.0012 19.0 9.1 0.022 14.9 2.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20091130|ref|NP_617205.1| - 0.0023 17.7 3.3 0.0023 17.7 3.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20091130|ref|NP_617205.1| - 0.0025 17.9 5.4 0.26 11.4 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20091130|ref|NP_617205.1| - 0.0033 17.5 1.9 0.0033 17.5 1.9 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091130|ref|NP_617205.1| - 0.0039 18.1 3.5 0.03 15.3 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|20091130|ref|NP_617205.1| - 0.014 15.8 9.9 0.032 14.7 9.9 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091130|ref|NP_617205.1| - 0.039 14.0 2.5 0.039 14.0 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Med27 PF11571.8 gi|20091130|ref|NP_617205.1| - 0.44 10.9 2.2 1.3 9.5 0.1 2.3 2 0 0 2 2 2 0 Mediator complex subunit 27 Fer4_4 PF12800.7 gi|20091130|ref|NP_617205.1| - 1.6 9.5 13.4 0.44 11.2 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20091130|ref|NP_617205.1| - 2 9.0 15.6 11 6.7 15.6 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20091130|ref|NP_617205.1| - 2.6 9.0 10.9 2.8 8.9 1.6 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain HATPase_c PF02518.26 gi|20091132|ref|NP_617207.1| - 3e-29 101.8 0.2 6.8e-29 100.6 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|20091132|ref|NP_617207.1| - 6.3e-25 87.4 0.4 7.8e-15 55.0 0.2 2.8 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|20091132|ref|NP_617207.1| - 5e-20 71.6 0.1 2e-11 43.9 0.0 2.4 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|20091132|ref|NP_617207.1| - 7.2e-18 64.4 0.0 1.6e-17 63.3 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|20091132|ref|NP_617207.1| - 4.3e-16 58.5 0.1 6.4e-07 29.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|20091132|ref|NP_617207.1| - 5.2e-14 52.3 0.0 1.4e-12 47.7 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|20091132|ref|NP_617207.1| - 1.6e-11 44.5 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.6 gi|20091132|ref|NP_617207.1| - 8.7e-07 29.1 0.0 1.9e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|20091132|ref|NP_617207.1| - 5.9e-05 22.9 0.0 0.00017 21.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|20091132|ref|NP_617207.1| - 0.00058 19.7 0.1 0.0019 18.1 0.0 1.9 2 0 0 2 2 2 1 GHKL domain GAF PF01590.26 gi|20091132|ref|NP_617207.1| - 0.0059 17.2 0.0 0.013 16.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|20091132|ref|NP_617207.1| - 0.0069 16.5 0.1 0.13 12.5 0.0 2.9 2 2 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|20091132|ref|NP_617207.1| - 0.038 14.3 0.0 0.077 13.3 0.0 1.5 1 0 0 1 1 1 0 GAF domain Flavin_Reduct PF01613.18 gi|20091133|ref|NP_617208.1| - 1.4e-25 90.2 0.0 1.7e-25 89.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF4235 PF14019.6 gi|20091134|ref|NP_617209.1| - 0.12 12.5 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4235) 5TM-5TMR_LYT PF07694.12 gi|20091134|ref|NP_617209.1| - 0.27 10.7 2.5 0.41 10.1 2.5 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT Big_5 PF13205.6 gi|20091135|ref|NP_617210.1| - 4.7e-05 24.1 0.0 6.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain Big_7 PF17957.1 gi|20091135|ref|NP_617210.1| - 0.045 14.5 0.7 4.9 8.0 0.1 2.4 2 0 0 2 2 2 0 Bacterial Ig domain Big_10 PF17964.1 gi|20091135|ref|NP_617210.1| - 0.052 13.5 0.0 0.063 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig domain Big_5 PF13205.6 gi|20091137|ref|NP_617212.1| - 4.7e-06 27.3 0.0 6e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain Hydantoinase_B PF02538.14 gi|20091138|ref|NP_617213.1| - 2.3e-209 696.1 0.1 3.4e-209 695.6 0.1 1.3 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|20091138|ref|NP_617213.1| - 1.9e-134 447.5 0.9 3.4e-134 446.7 0.2 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20091138|ref|NP_617213.1| - 7e-61 205.0 0.0 4.8e-59 199.0 0.0 2.7 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region COR PF16095.5 gi|20091139|ref|NP_617214.1| - 9.2e-52 175.7 0.0 1.6e-51 174.9 0.0 1.3 1 0 0 1 1 1 1 C-terminal of Roc, COR, domain LRR_4 PF12799.7 gi|20091139|ref|NP_617214.1| - 1.1e-34 117.9 61.1 9.1e-09 35.5 5.4 6.9 4 1 5 9 9 8 8 Leucine Rich repeats (2 copies) Roc PF08477.13 gi|20091139|ref|NP_617214.1| - 1e-30 106.4 0.0 1.9e-30 105.6 0.0 1.4 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase LRR_8 PF13855.6 gi|20091139|ref|NP_617214.1| - 3.6e-29 100.3 97.4 1.5e-10 40.7 4.0 5.3 1 1 6 7 7 7 7 Leucine rich repeat Ras PF00071.22 gi|20091139|ref|NP_617214.1| - 1e-20 74.0 0.1 1.8e-20 73.2 0.1 1.4 1 0 0 1 1 1 1 Ras family LRR_1 PF00560.33 gi|20091139|ref|NP_617214.1| - 5.3e-19 65.8 43.1 0.15 12.7 0.3 11.7 11 0 0 11 11 11 7 Leucine Rich Repeat Arf PF00025.21 gi|20091139|ref|NP_617214.1| - 1.6e-07 31.0 0.1 3.6e-07 29.8 0.1 1.6 1 0 0 1 1 1 1 ADP-ribosylation factor family LRR_6 PF13516.6 gi|20091139|ref|NP_617214.1| - 3.1e-07 29.9 46.3 0.51 10.5 0.6 10.4 10 0 0 10 10 10 5 Leucine Rich repeat Gtr1_RagA PF04670.12 gi|20091139|ref|NP_617214.1| - 0.00095 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region DUF4073 PF13285.6 gi|20091139|ref|NP_617214.1| - 0.017 14.8 0.0 4.1 7.0 0.0 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4073) PduV-EutP PF10662.9 gi|20091139|ref|NP_617214.1| - 0.047 13.4 0.0 2.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KKLCAg1 PF15204.6 gi|20091139|ref|NP_617214.1| - 4.7 7.4 11.5 2.7 8.1 0.1 4.3 2 2 2 4 4 4 0 Kita-kyushu lung cancer antigen 1 DUF4404 PF14357.6 gi|20091140|ref|NP_617215.1| - 0.0091 16.6 3.3 0.038 14.6 1.9 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4404) IF-2 PF11987.8 gi|20091140|ref|NP_617215.1| - 0.013 15.7 0.3 0.037 14.1 0.3 1.8 1 0 0 1 1 1 0 Translation-initiation factor 2 ACT_4 PF13291.6 gi|20091140|ref|NP_617215.1| - 0.13 12.9 0.5 0.13 12.9 0.5 2.4 2 1 0 2 2 2 0 ACT domain Bacillus_HBL PF05791.11 gi|20091140|ref|NP_617215.1| - 0.44 10.3 3.3 10 5.9 0.1 2.8 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) MutS_III PF05192.18 gi|20091140|ref|NP_617215.1| - 2.1 8.5 5.7 0.59 10.3 1.4 1.9 1 1 1 2 2 2 0 MutS domain III LsmAD PF06741.13 gi|20091140|ref|NP_617215.1| - 4.7 7.8 6.5 0.41 11.2 0.7 2.2 3 0 0 3 3 3 0 LsmAD domain DUF4401 PF14351.6 gi|20091141|ref|NP_617216.1| - 0.0012 18.2 1.6 0.0018 17.7 1.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) SSP160 PF06933.11 gi|20091141|ref|NP_617216.1| - 0.038 12.2 17.8 0.054 11.7 17.8 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF2207 PF09972.9 gi|20091141|ref|NP_617216.1| - 0.35 9.6 8.1 2.7 6.6 0.1 2.2 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) ETRAMP PF09716.10 gi|20091141|ref|NP_617216.1| - 0.59 10.2 3.6 17 5.5 0.0 2.6 2 1 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF1198 PF06711.11 gi|20091141|ref|NP_617216.1| - 0.64 10.1 5.3 0.21 11.6 1.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1198) Aminotran_5 PF00266.19 gi|20091142|ref|NP_617217.1| - 2.2e-05 23.6 0.0 3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V HNH_3 PF13392.6 gi|20091142|ref|NP_617217.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 HNH endonuclease NPV_P10 PF05531.12 gi|20091143|ref|NP_617218.1| - 0.007 16.8 0.3 0.014 15.8 0.3 1.6 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.9 gi|20091143|ref|NP_617218.1| - 0.015 15.3 0.2 0.017 15.2 0.2 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Endotoxin_C2 PF18449.1 gi|20091143|ref|NP_617218.1| - 0.11 12.8 0.4 0.3 11.4 0.1 1.8 2 0 0 2 2 2 0 Delta endotoxin OrfB_IS605 PF01385.19 gi|20091143|ref|NP_617218.1| - 0.13 12.5 0.1 0.16 12.2 0.1 1.1 1 0 0 1 1 1 0 Probable transposase Cbl_N PF02262.16 gi|20091144|ref|NP_617219.1| - 0.05 13.6 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 HHH_3 PF12836.7 gi|20091145|ref|NP_617220.1| - 2.3e-07 31.0 0.0 2.8e-06 27.5 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|20091145|ref|NP_617220.1| - 0.019 15.6 0.5 7.5 7.3 0.0 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix domain HHH PF00633.23 gi|20091145|ref|NP_617220.1| - 0.031 14.1 0.1 5.7 7.0 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF134 PF02001.16 gi|20091146|ref|NP_617221.1| - 0.00015 22.3 0.0 0.00029 21.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF134 TPR_1 PF00515.28 gi|20091147|ref|NP_617222.1| - 7.2e-44 145.9 15.4 6.4e-09 35.3 0.0 6.7 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091147|ref|NP_617222.1| - 1.4e-41 137.2 10.9 1.5e-07 31.0 0.2 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20091147|ref|NP_617222.1| - 2.2e-31 105.4 8.7 2e-07 30.7 0.0 6.7 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20091147|ref|NP_617222.1| - 5.2e-28 97.4 0.1 3.6e-09 37.1 0.0 4.2 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091147|ref|NP_617222.1| - 1.1e-27 95.4 10.4 8.9e-08 31.7 1.2 7.4 4 2 4 8 8 8 5 TPR repeat TPR_12 PF13424.6 gi|20091147|ref|NP_617222.1| - 2.7e-20 72.4 3.6 2.7e-05 24.4 0.0 5.7 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20091147|ref|NP_617222.1| - 3.5e-18 64.6 8.0 3.1e-06 27.2 0.0 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091147|ref|NP_617222.1| - 4.6e-18 63.9 3.6 0.00072 19.4 0.1 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20091147|ref|NP_617222.1| - 1.6e-17 62.7 0.2 0.0012 19.5 0.0 5.4 3 1 2 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20091147|ref|NP_617222.1| - 6.9e-13 48.6 0.1 0.00023 21.3 0.0 3.8 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20091147|ref|NP_617222.1| - 1.6e-11 44.5 4.7 0.00069 20.1 1.6 4.3 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20091147|ref|NP_617222.1| - 6.9e-11 42.0 7.7 0.19 12.5 0.1 5.8 6 0 0 6 6 5 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20091147|ref|NP_617222.1| - 1.3e-09 38.1 8.3 5.1e-05 23.4 2.5 4.1 2 2 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 Peptidase_S8 PF00082.22 gi|20091147|ref|NP_617222.1| - 3e-09 36.6 1.3 5.1e-08 32.5 1.3 2.1 1 1 0 1 1 1 1 Subtilase family Fis1_TPR_C PF14853.6 gi|20091147|ref|NP_617222.1| - 1.1e-07 31.9 3.6 0.17 12.0 0.0 4.4 4 0 0 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|20091147|ref|NP_617222.1| - 3e-06 26.9 3.8 0.11 12.4 0.3 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|20091147|ref|NP_617222.1| - 0.00013 20.9 0.6 0.012 14.4 0.1 2.5 1 1 2 3 3 3 1 Protein kinase G tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|20091147|ref|NP_617222.1| - 0.00035 20.6 2.9 0.3 11.1 0.1 2.8 2 1 0 2 2 2 2 Putative TPR-like repeat MIT PF04212.18 gi|20091147|ref|NP_617222.1| - 0.0004 20.4 8.3 1.1 9.4 0.6 5.3 6 0 0 6 6 6 1 MIT (microtubule interacting and transport) domain RPN7 PF10602.9 gi|20091147|ref|NP_617222.1| - 0.00099 18.9 0.2 0.57 9.9 0.0 3.2 2 1 0 3 3 3 1 26S proteasome subunit RPN7 NARP1 PF12569.8 gi|20091147|ref|NP_617222.1| - 0.0036 16.3 0.8 0.13 11.1 0.0 2.7 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|20091147|ref|NP_617222.1| - 0.0078 16.3 1.0 1.4 8.9 0.0 3.7 1 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) PPR PF01535.20 gi|20091147|ref|NP_617222.1| - 0.0096 16.1 1.6 18 5.9 0.1 4.1 4 0 0 4 4 4 0 PPR repeat TPR_15 PF13429.6 gi|20091147|ref|NP_617222.1| - 0.036 13.3 1.7 2.2 7.4 0.0 2.9 1 1 1 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.17 gi|20091147|ref|NP_617222.1| - 0.036 14.5 0.0 0.95 9.9 0.0 2.7 3 1 0 3 3 2 0 Bacterial transcriptional activator domain DUF5113 PF17140.4 gi|20091147|ref|NP_617222.1| - 1.3 8.8 5.2 34 4.2 0.3 4.4 3 2 3 6 6 6 0 Domain of unknown function (DUF5113) Adenine_deam_C PF13382.6 gi|20091148|ref|NP_617223.1| - 8.8e-60 200.9 0.1 1.5e-59 200.1 0.1 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|20091148|ref|NP_617223.1| - 9.8e-28 97.5 0.0 8.3e-26 91.1 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|20091148|ref|NP_617223.1| - 0.0011 18.6 0.2 1.2 8.5 0.2 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF2121 PF09894.9 gi|20091149|ref|NP_617224.1| - 6.9e-71 237.9 4.8 8e-71 237.7 4.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) Proteasome PF00227.26 gi|20091149|ref|NP_617224.1| - 0.003 17.1 0.1 0.18 11.3 0.0 2.3 2 0 0 2 2 2 2 Proteasome subunit Coat_X PF07552.11 gi|20091149|ref|NP_617224.1| - 0.15 11.9 2.0 0.28 11.0 0.4 2.0 2 0 0 2 2 2 0 Spore Coat Protein X and V domain Polysacc_synt PF01943.17 gi|20091151|ref|NP_617226.1| - 7.1e-26 91.2 22.1 7.1e-26 91.2 22.1 1.9 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|20091151|ref|NP_617226.1| - 3.3e-21 75.6 26.9 4.2e-14 52.5 11.3 2.7 2 0 0 2 2 2 2 MatE Polysacc_synt_3 PF13440.6 gi|20091151|ref|NP_617226.1| - 5.8e-17 61.8 10.3 5.8e-17 61.8 10.3 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|20091151|ref|NP_617226.1| - 2e-16 60.4 38.9 5.3e-15 55.7 9.2 3.4 3 0 0 3 3 3 3 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|20091151|ref|NP_617226.1| - 1.5e-06 27.1 27.1 1.5e-06 27.1 27.1 1.4 2 0 0 2 2 2 1 Lipid II flippase MurJ SEEK1 PF15357.6 gi|20091154|ref|NP_617229.1| - 0.1 12.7 0.0 0.11 12.6 0.0 1.0 1 0 0 1 1 1 0 Psoriasis susceptibility 1 candidate 1 DUF1015 PF06245.11 gi|20091155|ref|NP_617230.1| - 2.2e-73 247.4 0.0 2.9e-73 247.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) Rhodanese PF00581.20 gi|20091156|ref|NP_617231.1| - 5.5e-25 88.0 0.0 3.8e-16 59.5 0.1 2.6 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|20091156|ref|NP_617231.1| - 2.8e-10 40.5 0.4 1.7e-09 37.9 0.3 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF4157 PF13699.6 gi|20091157|ref|NP_617232.1| - 0.019 15.2 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) HTH_38 PF13936.6 gi|20091158|ref|NP_617233.1| - 0.06 13.1 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|20091158|ref|NP_617233.1| - 0.098 13.1 0.3 1.1 9.7 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MORN_2 PF07661.13 gi|20091159|ref|NP_617234.1| - 0.0019 18.2 0.0 14 6.3 0.0 5.0 6 0 0 6 6 6 2 MORN repeat variant UPF0047 PF01894.17 gi|20091160|ref|NP_617235.1| - 1.1e-29 102.9 0.0 1.3e-29 102.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF1254 PF06863.12 gi|20091161|ref|NP_617236.1| - 1.1e-41 142.0 0.1 1.5e-40 138.4 0.1 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF1254) DUF1214 PF06742.11 gi|20091161|ref|NP_617236.1| - 2.6e-33 114.8 0.7 5.3e-33 113.7 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1214) NBD_C PF17042.5 gi|20091161|ref|NP_617236.1| - 0.18 12.3 0.8 0.37 11.3 0.8 1.5 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain PQQ_2 PF13360.6 gi|20091162|ref|NP_617237.1| - 0.036 13.6 1.8 1 8.9 0.1 2.8 3 1 0 3 3 3 0 PQQ-like domain DUF5074 PF16819.5 gi|20091162|ref|NP_617237.1| - 0.038 14.0 0.8 13 5.8 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF5074) DUF2795 PF11387.8 gi|20091166|ref|NP_617241.1| - 1.2e-32 111.8 1.1 1.8e-15 56.9 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2795) Myb_DNA-bind_3 PF12776.7 gi|20091166|ref|NP_617241.1| - 0.00094 20.1 0.1 1.5 9.9 0.0 2.1 1 1 1 2 2 2 2 Myb/SANT-like DNA-binding domain HEAT_2 PF13646.6 gi|20091166|ref|NP_617241.1| - 0.0015 18.9 0.2 0.13 12.7 0.0 2.3 1 1 1 2 2 2 1 HEAT repeats PTS_IIA PF02255.16 gi|20091166|ref|NP_617241.1| - 0.0063 16.5 0.9 4.6 7.4 0.0 3.4 1 1 3 4 4 4 1 PTS system, Lactose/Cellobiose specific IIA subunit 5_3_exonuc PF01367.20 gi|20091166|ref|NP_617241.1| - 0.012 16.2 0.2 0.029 15.0 0.1 1.6 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold SLT_L PF14718.6 gi|20091166|ref|NP_617241.1| - 0.03 14.4 1.2 3.4 7.9 0.0 2.5 3 0 0 3 3 3 0 Soluble lytic murein transglycosylase L domain HTH_Tnp_Tc5 PF03221.16 gi|20091166|ref|NP_617241.1| - 0.034 14.2 0.6 2.1 8.5 0.1 2.2 2 0 0 2 2 2 0 Tc5 transposase DNA-binding domain HEAT_PBS PF03130.16 gi|20091166|ref|NP_617241.1| - 0.044 14.5 0.0 11 7.1 0.0 3.3 3 1 1 4 4 4 0 PBS lyase HEAT-like repeat Flu_M1_C PF08289.11 gi|20091166|ref|NP_617241.1| - 0.051 13.8 1.2 1.1 9.5 0.1 2.3 1 1 1 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain Drf_FH3 PF06367.16 gi|20091166|ref|NP_617241.1| - 0.057 13.0 0.2 0.12 12.0 0.2 1.7 1 1 0 1 1 1 0 Diaphanous FH3 Domain DUF349 PF03993.12 gi|20091166|ref|NP_617241.1| - 0.062 13.6 3.9 0.96 9.8 1.1 2.4 1 1 1 2 2 2 0 Domain of Unknown Function (DUF349) Stanniocalcin PF03298.13 gi|20091166|ref|NP_617241.1| - 0.077 12.3 0.0 1.1 8.5 0.0 2.0 1 1 1 2 2 2 0 Stanniocalcin family Ish1 PF10281.9 gi|20091166|ref|NP_617241.1| - 0.08 13.3 0.1 6.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Trypsin_2 PF13365.6 gi|20091167|ref|NP_617242.1| - 0.00076 20.4 0.2 0.039 14.9 0.2 2.1 1 1 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|20091167|ref|NP_617242.1| - 0.0035 17.2 0.1 0.052 13.4 0.2 2.1 1 1 0 2 2 2 1 Trypsin Peptidase_S55 PF05580.12 gi|20091167|ref|NP_617242.1| - 0.008 16.1 0.5 0.012 15.6 0.5 1.2 1 0 0 1 1 1 1 SpoIVB peptidase S55 Peptidase_S32 PF05579.13 gi|20091167|ref|NP_617242.1| - 0.0094 15.2 0.0 0.023 13.9 0.0 1.6 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Methyltransf_11 PF08241.12 gi|20091168|ref|NP_617243.1| - 4.6e-20 72.1 0.0 1.1e-19 70.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091168|ref|NP_617243.1| - 6.7e-20 71.6 0.0 2.1e-19 70.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091168|ref|NP_617243.1| - 2e-17 63.4 0.0 4.9e-17 62.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091168|ref|NP_617243.1| - 2.7e-16 59.6 0.0 4.6e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20091168|ref|NP_617243.1| - 8.4e-14 52.1 0.0 2.7e-13 50.5 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091168|ref|NP_617243.1| - 3.2e-13 49.8 0.0 6.5e-13 48.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|20091168|ref|NP_617243.1| - 1.5e-06 28.1 0.0 2.4e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|20091168|ref|NP_617243.1| - 0.00017 21.1 0.0 0.00036 20.0 0.0 1.6 1 1 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|20091168|ref|NP_617243.1| - 0.00054 19.3 0.1 0.00079 18.8 0.1 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|20091168|ref|NP_617243.1| - 0.00054 19.5 0.0 0.0015 18.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|20091168|ref|NP_617243.1| - 0.00089 18.5 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.10 gi|20091168|ref|NP_617243.1| - 0.017 14.8 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.17 gi|20091168|ref|NP_617243.1| - 0.057 12.5 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin DUF3437 PF11919.8 gi|20091168|ref|NP_617243.1| - 0.16 11.9 0.0 9.4 6.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3437) PrmA PF06325.13 gi|20091168|ref|NP_617243.1| - 0.2 11.0 0.0 0.69 9.2 0.0 1.8 2 1 1 3 3 3 0 Ribosomal protein L11 methyltransferase (PrmA) PKD PF00801.20 gi|20091170|ref|NP_617245.1| - 8.3e-34 115.3 25.0 2.5e-12 46.5 2.7 3.7 3 0 0 3 3 3 3 PKD domain Polysacc_deac_1 PF01522.21 gi|20091170|ref|NP_617245.1| - 3.1e-11 43.2 0.0 9.1e-11 41.7 0.0 1.8 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|20091170|ref|NP_617245.1| - 2.7e-07 30.5 0.1 4.9e-07 29.6 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) PGF-CTERM PF18204.1 gi|20091170|ref|NP_617245.1| - 1.1e-06 28.4 0.0 1.1e-06 28.4 0.0 1.7 2 0 0 2 2 2 1 PGF-CTERM motif PKD_3 PF16820.5 gi|20091170|ref|NP_617245.1| - 0.0034 17.1 6.5 1.5 8.6 0.3 3.6 3 0 0 3 3 3 2 PKD-like domain MG2 PF01835.19 gi|20091170|ref|NP_617245.1| - 0.0069 16.8 0.7 0.081 13.4 0.2 2.8 2 1 1 3 3 3 1 MG2 domain DUF943 PF06092.12 gi|20091170|ref|NP_617245.1| - 0.089 12.5 0.2 25 4.5 0.0 3.2 3 0 0 3 3 3 0 Enterobacterial putative membrane protein (DUF943) Disaggr_assoc PF08480.10 gi|20091172|ref|NP_617247.1| - 1.2e-84 283.0 14.4 1.2e-84 283.0 14.4 2.9 2 1 0 3 3 3 1 Disaggregatase related Beta_helix PF13229.6 gi|20091172|ref|NP_617247.1| - 6.6e-12 45.5 57.6 6.5e-08 32.6 28.4 3.6 2 1 1 3 3 3 2 Right handed beta helix region PGF-CTERM PF18204.1 gi|20091172|ref|NP_617247.1| - 3.9e-05 23.5 0.2 3.9e-05 23.5 0.2 1.7 2 0 0 2 2 2 1 PGF-CTERM motif DUF5123 PF17161.4 gi|20091172|ref|NP_617247.1| - 0.00086 20.4 1.7 0.00086 20.4 1.7 3.9 3 1 2 5 5 5 1 Domain of unknown function (DUF5123) Acetyltransf_1 PF00583.25 gi|20091173|ref|NP_617248.1| - 1.7e-11 44.4 0.0 2.1e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20091173|ref|NP_617248.1| - 1.7e-06 28.3 0.0 2.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20091173|ref|NP_617248.1| - 8.8e-05 22.5 0.0 0.0001 22.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20091173|ref|NP_617248.1| - 0.00029 20.7 0.0 0.00037 20.4 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|20091173|ref|NP_617248.1| - 0.00072 19.6 0.0 0.00088 19.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20091173|ref|NP_617248.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4386 PF14329.6 gi|20091174|ref|NP_617249.1| - 5.6e-65 219.2 31.1 6.3e-65 219.0 31.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) GWT1 PF06423.12 gi|20091174|ref|NP_617249.1| - 0.23 11.6 6.2 0.4 10.8 6.1 1.5 1 1 0 1 1 1 0 GWT1 SirB PF04247.12 gi|20091175|ref|NP_617250.1| - 0.62 10.2 11.6 0.087 12.9 5.4 2.1 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB MgtC PF02308.16 gi|20091175|ref|NP_617250.1| - 1.3 9.4 5.5 0.9 9.9 2.0 2.4 1 1 1 2 2 2 0 MgtC family dCMP_cyt_deam_1 PF00383.23 gi|20091176|ref|NP_617251.1| - 6.2e-19 67.7 0.0 8.9e-19 67.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|20091176|ref|NP_617251.1| - 7.2e-13 48.5 0.0 9.2e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|20091176|ref|NP_617251.1| - 0.017 15.2 0.1 0.031 14.3 0.1 1.4 1 1 0 1 1 1 0 Bd3614-like deaminase UPF0552 PF10574.9 gi|20091177|ref|NP_617252.1| - 0.066 12.5 0.2 0.15 11.4 0.1 1.6 1 1 0 1 1 1 0 Arp2/3-interacting proteins Arpin Abhydrolase_1 PF00561.20 gi|20091178|ref|NP_617253.1| - 2.4e-10 40.5 0.1 4.2e-10 39.7 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|20091178|ref|NP_617253.1| - 1.6e-09 38.7 0.3 1.8e-09 38.5 0.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|20091178|ref|NP_617253.1| - 0.00012 21.4 0.0 0.00028 20.2 0.0 1.7 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|20091178|ref|NP_617253.1| - 0.00057 19.6 0.0 0.00094 18.9 0.0 1.5 1 1 0 1 1 1 1 Putative esterase Ndr PF03096.14 gi|20091178|ref|NP_617253.1| - 0.0035 16.1 0.0 0.0044 15.8 0.0 1.1 1 0 0 1 1 1 1 Ndr family PGAP1 PF07819.13 gi|20091178|ref|NP_617253.1| - 0.027 14.2 0.1 1.7 8.3 0.1 2.1 1 1 0 1 1 1 0 PGAP1-like protein Lipase_2 PF01674.18 gi|20091178|ref|NP_617253.1| - 0.081 12.4 0.1 0.47 9.9 0.1 1.9 1 1 0 1 1 1 0 Lipase (class 2) RimK PF08443.11 gi|20091178|ref|NP_617253.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 RimK-like ATP-grasp domain LIDHydrolase PF10230.9 gi|20091178|ref|NP_617253.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase DUF915 PF06028.11 gi|20091178|ref|NP_617253.1| - 0.13 11.6 0.1 0.33 10.2 0.1 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) APH PF01636.23 gi|20091179|ref|NP_617254.1| - 1.4e-08 34.9 0.0 2.8e-08 34.0 0.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family DUF4381 PF14316.6 gi|20091179|ref|NP_617254.1| - 0.14 12.4 0.2 1 9.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Glycos_transf_1 PF00534.20 gi|20091180|ref|NP_617255.1| - 1e-29 103.3 0.0 2e-29 102.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20091180|ref|NP_617255.1| - 4.5e-26 91.9 0.2 7.3e-26 91.2 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|20091180|ref|NP_617255.1| - 2.4e-23 83.1 0.0 4.3e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20091180|ref|NP_617255.1| - 5.3e-21 75.7 0.0 7.6e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|20091180|ref|NP_617255.1| - 7.4e-17 61.8 0.1 2e-14 53.9 0.1 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|20091180|ref|NP_617255.1| - 2e-09 37.6 0.0 3.8e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like LpxK PF02606.14 gi|20091180|ref|NP_617255.1| - 0.003 16.7 0.0 0.0045 16.1 0.0 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase Glyco_trans_1_2 PF13524.6 gi|20091180|ref|NP_617255.1| - 0.014 15.8 0.0 0.038 14.4 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 PhoU PF01895.19 gi|20091181|ref|NP_617256.1| - 7.7e-21 74.4 12.2 4.9e-19 68.6 1.9 3.3 3 1 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|20091181|ref|NP_617256.1| - 0.0027 17.6 0.0 0.0077 16.1 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin APH PF01636.23 gi|20091182|ref|NP_617257.1| - 5e-07 29.9 0.0 8.2e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|20091182|ref|NP_617257.1| - 0.0032 17.1 0.9 2.1 7.9 0.0 2.5 1 1 0 2 2 2 2 RIO1 family Pkinase_Tyr PF07714.17 gi|20091182|ref|NP_617257.1| - 0.02 14.2 0.0 0.049 12.9 0.1 1.6 2 0 0 2 2 2 0 Protein tyrosine kinase Lipoprotein_3 PF00938.17 gi|20091182|ref|NP_617257.1| - 0.12 12.5 0.1 0.68 10.2 0.1 2.0 2 0 0 2 2 2 0 Lipoprotein CHASE4 PF05228.13 gi|20091183|ref|NP_617258.1| - 5.4e-36 123.8 0.0 1.6e-35 122.3 0.0 1.8 2 0 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.26 gi|20091183|ref|NP_617258.1| - 2.4e-28 98.9 0.1 6.2e-28 97.6 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20091183|ref|NP_617258.1| - 5.6e-20 71.1 0.0 1.9e-19 69.5 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|20091183|ref|NP_617258.1| - 5e-17 62.1 0.0 1.4e-16 60.7 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|20091183|ref|NP_617258.1| - 2.6e-07 30.9 0.1 1e-06 28.9 0.1 2.1 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.6 gi|20091183|ref|NP_617258.1| - 1.9e-05 25.2 0.0 5.4e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|20091183|ref|NP_617258.1| - 0.0009 19.1 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|20091183|ref|NP_617258.1| - 0.0032 17.5 0.0 0.0088 16.0 0.0 1.9 1 0 0 1 1 1 1 PAS fold HAMP PF00672.25 gi|20091183|ref|NP_617258.1| - 0.0039 17.5 0.1 0.0072 16.7 0.1 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 gi|20091183|ref|NP_617258.1| - 0.013 15.4 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain UN_NPL4 PF11543.8 gi|20091183|ref|NP_617258.1| - 0.032 14.7 0.3 3.1 8.3 0.0 2.8 2 0 0 2 2 2 0 Nuclear pore localisation protein NPL4 PBP_like_2 PF12849.7 gi|20091184|ref|NP_617259.1| - 3.1e-19 69.7 1.2 4.1e-19 69.3 1.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|20091184|ref|NP_617259.1| - 1.1e-07 31.1 1.2 8.5e-07 28.3 1.2 2.1 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|20091184|ref|NP_617259.1| - 0.13 11.9 0.0 2.2 8.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein SeqA_N PF17206.3 gi|20091184|ref|NP_617259.1| - 0.18 11.2 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 SeqA protein N-terminal domain CHAD PF05235.14 gi|20091185|ref|NP_617260.1| - 6.9e-51 173.4 1.9 1.5e-50 172.3 1.9 1.6 1 0 0 1 1 1 1 CHAD domain CYTH PF01928.21 gi|20091185|ref|NP_617260.1| - 3.8e-19 69.3 0.8 1.2e-18 67.7 0.8 1.9 1 0 0 1 1 1 1 CYTH domain Stealth_CR3 PF17102.5 gi|20091185|ref|NP_617260.1| - 0.026 14.4 0.5 0.67 9.9 0.0 2.7 2 0 0 2 2 2 0 Stealth protein CR3, conserved region 3 Ppx-GppA PF02541.16 gi|20091186|ref|NP_617261.1| - 5.8e-63 213.0 0.3 8.9e-63 212.4 0.3 1.3 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.22 gi|20091186|ref|NP_617261.1| - 2e-10 41.0 1.2 6.4e-10 39.3 1.2 1.9 1 0 0 1 1 1 1 HD domain FtsA PF14450.6 gi|20091186|ref|NP_617261.1| - 0.012 16.0 0.0 0.2 12.1 0.0 2.5 2 1 0 2 2 2 0 Cell division protein FtsA Zn_dep_PLPC PF00882.18 gi|20091186|ref|NP_617261.1| - 0.12 12.3 0.1 0.31 11.0 0.1 1.7 1 0 0 1 1 1 0 Zinc dependent phospholipase C Spc29 PF17082.5 gi|20091187|ref|NP_617262.1| - 0.0062 16.4 4.1 0.0062 16.4 4.1 2.9 1 1 2 3 3 3 1 Spindle Pole Component 29 GCS2 PF04107.13 gi|20091187|ref|NP_617262.1| - 1.2 8.4 6.8 6.9 5.9 1.4 2.4 1 1 1 2 2 2 0 Glutamate-cysteine ligase family 2(GCS2) SUIM_assoc PF16619.5 gi|20091187|ref|NP_617262.1| - 2.3 8.3 9.9 0.079 13.0 2.1 2.6 2 1 1 3 3 3 0 Unstructured region C-term to UIM in Ataxin3 Phage_GPO PF05929.11 gi|20091187|ref|NP_617262.1| - 8.4 5.9 16.2 12 5.5 16.2 1.2 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Pentapeptide PF00805.22 gi|20091188|ref|NP_617263.1| - 2.9e-112 365.5 85.1 2.8e-14 52.4 6.4 9.5 2 1 10 13 13 13 12 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|20091188|ref|NP_617263.1| - 2.1e-39 133.5 4.2 8.4e-11 41.9 0.2 4.8 1 1 4 5 5 5 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|20091188|ref|NP_617263.1| - 6.9e-26 90.1 0.0 0.0011 19.1 0.0 7.6 1 1 7 8 8 8 7 Pentapeptide repeats (9 copies) DNA_ligase_OB PF03120.16 gi|20091188|ref|NP_617263.1| - 0.0007 19.4 8.3 21 5.1 0.0 7.2 2 1 7 9 9 9 1 NAD-dependent DNA ligase OB-fold domain SAM_PNT PF02198.16 gi|20091188|ref|NP_617263.1| - 1.5 8.8 3.7 16 5.6 0.1 4.0 2 2 1 4 4 4 0 Sterile alpha motif (SAM)/Pointed domain UvrD-helicase PF00580.21 gi|20091191|ref|NP_617266.1| - 1.5e-60 205.4 9.5 1.5e-60 205.4 9.5 1.7 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|20091191|ref|NP_617266.1| - 7.3e-34 117.2 0.0 1.9e-33 115.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|20091191|ref|NP_617266.1| - 1.1e-22 81.0 2.9 1.1e-22 81.0 2.9 2.5 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|20091191|ref|NP_617266.1| - 5.6e-09 36.0 0.0 2.8e-06 27.2 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|20091191|ref|NP_617266.1| - 0.00017 21.9 0.7 0.17 12.1 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_11 PF13086.6 gi|20091191|ref|NP_617266.1| - 0.013 15.3 1.2 0.032 14.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain LMP PF04778.12 gi|20091191|ref|NP_617266.1| - 0.78 9.6 8.5 0.37 10.7 5.0 2.2 2 0 0 2 2 2 0 LMP repeated region AAA_12 PF13087.6 gi|20091191|ref|NP_617266.1| - 1.1 8.8 9.0 0.21 11.2 0.6 3.4 3 1 0 3 3 3 0 AAA domain PDDEXK_1 PF12705.7 gi|20091192|ref|NP_617267.1| - 2.1e-26 93.4 0.2 2.1e-26 93.4 0.2 1.8 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.6 gi|20091192|ref|NP_617267.1| - 2.2e-17 63.5 0.1 3.8e-17 62.7 0.1 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|20091192|ref|NP_617267.1| - 9.1e-10 38.2 0.0 0.00099 18.9 0.0 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain DUF2800 PF10926.8 gi|20091192|ref|NP_617267.1| - 1.2e-05 24.8 0.0 2.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Dna2 PF08696.11 gi|20091192|ref|NP_617267.1| - 0.0014 18.5 0.1 0.0048 16.7 0.0 1.8 2 0 0 2 2 2 1 DNA replication factor Dna2 Exo5 PF09810.9 gi|20091192|ref|NP_617267.1| - 0.0017 17.9 0.3 0.0017 17.9 0.3 3.0 2 1 1 3 3 3 1 Exonuclease V - a 5' deoxyribonuclease DUF3799 PF12684.7 gi|20091192|ref|NP_617267.1| - 0.066 13.0 0.7 0.19 11.5 0.7 1.9 1 1 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) Cas_Cas4 PF01930.17 gi|20091192|ref|NP_617267.1| - 0.091 12.9 7.8 0.76 9.9 1.5 3.9 3 1 0 3 3 3 0 Domain of unknown function DUF83 AAA_27 PF13514.6 gi|20091195|ref|NP_617270.1| - 3.5e-19 69.2 0.0 3.5e-19 69.2 0.0 4.4 5 1 0 5 5 5 1 AAA domain SMC_N PF02463.19 gi|20091195|ref|NP_617270.1| - 2.5e-05 23.8 0.0 0.012 15.1 0.0 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20091195|ref|NP_617270.1| - 3.9e-05 24.3 28.1 3.9e-05 24.3 28.1 8.2 2 2 2 4 4 4 1 AAA domain GAS PF13851.6 gi|20091195|ref|NP_617270.1| - 0.0013 18.1 16.8 0.0013 18.1 16.8 9.2 6 3 1 8 8 8 4 Growth-arrest specific micro-tubule binding AAA_29 PF13555.6 gi|20091195|ref|NP_617270.1| - 0.0082 15.9 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF948 PF06103.11 gi|20091195|ref|NP_617270.1| - 7.2 6.9 13.8 2.5 8.4 0.3 6.1 8 0 0 8 8 8 0 Bacterial protein of unknown function (DUF948) DUF4407 PF14362.6 gi|20091195|ref|NP_617270.1| - 9 5.6 47.0 2.8 7.2 6.7 5.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4407) Metallophos PF00149.28 gi|20091196|ref|NP_617271.1| - 2e-12 48.1 0.4 4e-12 47.1 0.4 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20091196|ref|NP_617271.1| - 4.9e-11 43.1 0.0 7.2e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Lon_2 PF13337.6 gi|20091197|ref|NP_617272.1| - 1.3e-206 686.5 0.7 1.6e-206 686.3 0.7 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.13 gi|20091197|ref|NP_617272.1| - 1.4e-07 31.3 0.0 3e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain PglZ PF08665.12 gi|20091198|ref|NP_617273.1| - 2.2e-65 220.1 0.4 4.9e-65 218.9 0.0 1.8 2 0 0 2 2 2 1 PglZ domain Phosphodiest PF01663.22 gi|20091198|ref|NP_617273.1| - 6.9e-06 25.9 0.3 2.1e-05 24.3 0.2 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF234 PF03008.14 gi|20091199|ref|NP_617274.1| - 4.9e-20 71.8 0.2 5.3e-19 68.5 0.2 2.6 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|20091199|ref|NP_617274.1| - 6.7e-20 72.0 0.4 3.5e-18 66.4 0.4 2.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|20091199|ref|NP_617274.1| - 7.7e-12 45.4 0.7 3.4e-11 43.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20091199|ref|NP_617274.1| - 7.2e-05 23.1 0.0 0.00019 21.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20091199|ref|NP_617274.1| - 0.00012 22.6 0.2 0.0062 16.9 0.2 2.7 2 1 0 2 2 2 1 AAA ATPase domain DUF4143 PF13635.6 gi|20091199|ref|NP_617274.1| - 0.00034 20.7 0.1 0.0011 19.2 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) HTH_5 PF01022.20 gi|20091199|ref|NP_617274.1| - 0.012 15.4 0.2 0.028 14.3 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|20091199|ref|NP_617274.1| - 0.073 12.5 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial TniB protein HTH_24 PF13412.6 gi|20091199|ref|NP_617274.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Roc PF08477.13 gi|20091199|ref|NP_617274.1| - 0.16 12.2 0.1 0.63 10.3 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase HicB_lk_antitox PF15919.5 gi|20091200|ref|NP_617275.1| - 4e-06 26.9 0.1 4.4e-06 26.8 0.1 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system PHD_like PF12910.7 gi|20091200|ref|NP_617275.1| - 0.00093 19.2 0.1 0.0014 18.7 0.1 1.3 1 1 0 1 1 1 1 Antitoxin of toxin-antitoxin, RelE / RelB, TA system TPR_11 PF13414.6 gi|20091200|ref|NP_617275.1| - 0.04 13.6 0.3 0.06 13.0 0.3 1.2 1 0 0 1 1 1 0 TPR repeat HATPase_c_4 PF13749.6 gi|20091201|ref|NP_617276.1| - 1.5e-26 92.3 0.0 3.3e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|20091201|ref|NP_617276.1| - 7.2e-23 81.2 0.0 1.3e-22 80.4 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_45 PF14947.6 gi|20091201|ref|NP_617276.1| - 0.032 14.2 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HATPase_c_2 PF13581.6 gi|20091201|ref|NP_617276.1| - 0.046 13.7 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HTH_34 PF13601.6 gi|20091201|ref|NP_617276.1| - 0.071 13.3 0.1 0.21 11.8 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|20091201|ref|NP_617276.1| - 0.13 12.0 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AlbA_2 PF04326.14 gi|20091202|ref|NP_617277.1| - 1.4e-22 80.3 0.2 2.7e-22 79.4 0.2 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain HATPase_c_4 PF13749.6 gi|20091202|ref|NP_617277.1| - 2e-22 79.1 0.0 4.1e-22 78.1 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal DUF334 PF03904.13 gi|20091202|ref|NP_617277.1| - 0.11 12.0 0.3 0.19 11.3 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DUF3800 PF12686.7 gi|20091203|ref|NP_617278.1| - 0.0052 17.4 1.2 0.011 16.4 1.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) N6_Mtase PF02384.16 gi|20091204|ref|NP_617279.1| - 2.3e-09 36.9 0.0 0.00042 19.7 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|20091204|ref|NP_617279.1| - 5.3e-07 30.1 1.6 1.7e-06 28.5 0.1 2.7 2 0 0 2 2 2 1 Eco57I restriction-modification methylase DUF724 PF05266.14 gi|20091204|ref|NP_617279.1| - 0.067 13.0 4.6 0.12 12.2 3.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Dzip-like_N PF13815.6 gi|20091204|ref|NP_617279.1| - 0.13 12.3 2.1 0.16 11.9 0.4 2.0 2 0 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal KAP_NTPase PF07693.14 gi|20091205|ref|NP_617280.1| - 0.0038 16.5 0.2 0.0093 15.2 0.0 1.9 2 0 0 2 2 2 1 KAP family P-loop domain S1_2 PF13509.6 gi|20091205|ref|NP_617280.1| - 0.042 13.9 0.1 0.2 11.7 0.1 2.2 1 0 0 1 1 1 0 S1 domain SMC_N PF02463.19 gi|20091205|ref|NP_617280.1| - 0.88 9.0 9.2 0.019 14.4 1.1 2.4 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF1788 PF08747.11 gi|20091206|ref|NP_617281.1| - 2.4e-41 140.6 0.1 9.5e-41 138.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1788) Zw10 PF06248.13 gi|20091206|ref|NP_617281.1| - 0.045 12.3 1.9 0.056 12.0 1.9 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 G10 PF01125.17 gi|20091206|ref|NP_617281.1| - 0.35 10.6 1.3 0.74 9.6 1.3 1.6 1 1 0 1 1 1 0 G10 protein Lactamase_B_2 PF12706.7 gi|20091207|ref|NP_617282.1| - 2.4e-22 79.5 0.0 3.1e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20091207|ref|NP_617282.1| - 3.6e-10 40.2 1.0 1e-09 38.7 0.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|20091207|ref|NP_617282.1| - 0.032 13.7 0.0 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20091207|ref|NP_617282.1| - 0.076 12.9 0.0 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain NTP_transf_2 PF01909.23 gi|20091208|ref|NP_617283.1| - 7.7e-13 48.6 0.1 1.2e-12 47.9 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20091208|ref|NP_617283.1| - 1.2e-12 47.7 0.0 1.8e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|20091208|ref|NP_617283.1| - 0.0088 16.2 0.0 0.014 15.6 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase beta palm MULE PF10551.9 gi|20091210|ref|NP_617285.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091210|ref|NP_617285.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091210|ref|NP_617285.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091210|ref|NP_617285.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091210|ref|NP_617285.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091210|ref|NP_617285.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091210|ref|NP_617285.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091210|ref|NP_617285.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091210|ref|NP_617285.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20091210|ref|NP_617285.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091210|ref|NP_617285.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger TRAM PF01938.20 gi|20091211|ref|NP_617286.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 TRAM domain MannoseP_isomer PF01050.18 gi|20091212|ref|NP_617287.1| - 1.5e-34 119.1 1.0 2.8e-34 118.2 1.0 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Glycos_transf_1 PF00534.20 gi|20091212|ref|NP_617287.1| - 1.9e-25 89.4 0.1 3.4e-25 88.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20091212|ref|NP_617287.1| - 2e-16 60.6 0.0 4e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20091212|ref|NP_617287.1| - 3.7e-10 40.1 0.0 8.2e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Cupin_2 PF07883.11 gi|20091212|ref|NP_617287.1| - 7.7e-09 35.1 0.1 1.3e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Glyco_trans_1_2 PF13524.6 gi|20091212|ref|NP_617287.1| - 1.3e-06 28.7 0.1 3e-06 27.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20091212|ref|NP_617287.1| - 0.043 14.3 0.0 0.12 12.8 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Auxin_BP PF02041.16 gi|20091212|ref|NP_617287.1| - 0.058 13.1 0.1 0.32 10.6 0.1 2.1 2 0 0 2 2 2 0 Auxin binding protein Glyco_hydro_130 PF04041.13 gi|20091213|ref|NP_617288.1| - 5.4e-56 189.9 0.0 6.7e-56 189.5 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase DUF1861 PF08950.10 gi|20091213|ref|NP_617288.1| - 0.11 11.7 0.0 0.35 10.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1861) Glycos_transf_1 PF00534.20 gi|20091214|ref|NP_617289.1| - 1.3e-16 60.6 0.0 3.5e-16 59.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20091214|ref|NP_617289.1| - 8.2e-08 32.4 0.0 1.4e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_hydro_88 PF07470.13 gi|20091214|ref|NP_617289.1| - 0.00015 21.0 0.4 0.039 13.0 0.2 2.8 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 AATase PF07247.12 gi|20091214|ref|NP_617289.1| - 0.011 14.3 0.0 0.02 13.5 0.0 1.3 1 0 0 1 1 1 0 Alcohol acetyltransferase Glyco_hydro_76 PF03663.14 gi|20091214|ref|NP_617289.1| - 0.032 13.7 0.8 0.058 12.9 0.8 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|20091214|ref|NP_617289.1| - 0.056 12.9 1.5 1.7 8.1 0.1 2.5 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Glyco_trans_1_2 PF13524.6 gi|20091214|ref|NP_617289.1| - 0.076 13.4 0.0 0.22 12.0 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 Disaggr_repeat PF06848.11 gi|20091215|ref|NP_617290.1| - 2.3e-180 594.3 19.1 1.4e-91 305.0 5.9 2.6 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|20091215|ref|NP_617290.1| - 2.3e-86 288.5 9.1 2.3e-86 288.5 9.1 3.1 3 1 0 3 3 3 1 Disaggregatase related Beta_helix PF13229.6 gi|20091215|ref|NP_617290.1| - 1.8e-14 53.9 44.6 7.4e-14 51.9 19.6 3.6 3 1 1 4 4 4 2 Right handed beta helix region He_PIG PF05345.12 gi|20091215|ref|NP_617290.1| - 1.3e-09 38.1 6.5 1.9e-08 34.4 1.7 3.1 2 0 0 2 2 2 1 Putative Ig domain Big_9 PF17963.1 gi|20091215|ref|NP_617290.1| - 2.9e-08 34.4 3.8 2.9e-08 34.4 3.8 2.5 2 0 0 2 2 1 1 Bacterial Ig domain Cadherin_5 PF17892.1 gi|20091215|ref|NP_617290.1| - 6.4e-06 26.1 0.9 1.5e-05 24.9 0.9 1.6 1 0 0 1 1 1 1 Cadherin-like domain TGFb_propeptide PF00688.18 gi|20091215|ref|NP_617290.1| - 0.00019 21.3 0.0 31 4.2 0.0 4.2 4 0 0 4 4 4 0 TGF-beta propeptide DUF5123 PF17161.4 gi|20091215|ref|NP_617290.1| - 0.0002 22.4 0.0 0.0002 22.4 0.0 4.2 3 1 1 4 4 4 1 Domain of unknown function (DUF5123) Big_7 PF17957.1 gi|20091215|ref|NP_617290.1| - 0.09 13.6 4.7 0.12 13.2 1.6 3.0 2 0 0 2 2 2 0 Bacterial Ig domain MORN_2 PF07661.13 gi|20091215|ref|NP_617290.1| - 0.17 12.2 3.6 89 3.8 0.0 4.5 4 0 0 4 4 4 0 MORN repeat variant VCBS PF13517.6 gi|20091215|ref|NP_617290.1| - 1.8 9.2 10.2 36 5.0 0.4 4.9 4 0 0 4 4 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Y_phosphatase3 PF13350.6 gi|20091216|ref|NP_617291.1| - 9.1e-05 22.5 0.1 0.0001 22.3 0.1 1.0 1 0 0 1 1 1 1 Tyrosine phosphatase family DSPc PF00782.20 gi|20091216|ref|NP_617291.1| - 0.014 15.2 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|20091216|ref|NP_617291.1| - 0.018 14.6 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein-tyrosine phosphatase DUF3104 PF11302.8 gi|20091216|ref|NP_617291.1| - 0.057 13.2 0.0 0.087 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) DUF1699 PF08004.11 gi|20091218|ref|NP_617293.1| - 2.9e-61 204.8 0.9 3.3e-61 204.7 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4394 PF14339.6 gi|20091218|ref|NP_617293.1| - 0.063 12.6 0.0 0.071 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) PAM2 PF07145.15 gi|20091218|ref|NP_617293.1| - 0.11 12.2 0.3 13 5.7 0.1 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region TrmB PF01978.19 gi|20091219|ref|NP_617294.1| - 0.0064 16.4 0.0 0.14 12.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2551 PF10826.8 gi|20091220|ref|NP_617295.1| - 2.7e-34 117.2 0.8 3.5e-34 116.9 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|20091220|ref|NP_617295.1| - 0.00076 19.8 0.0 0.0013 19.1 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor zf-ACC PF17848.1 gi|20091221|ref|NP_617296.1| - 0.13 12.3 1.7 3.7 7.7 0.1 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain RNHCP PF12647.7 gi|20091221|ref|NP_617296.1| - 0.14 12.2 0.1 0.21 11.6 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain PPK2 PF03976.14 gi|20091222|ref|NP_617297.1| - 7e-139 460.8 8.6 4.9e-88 294.5 4.9 2.1 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_33 PF13671.6 gi|20091222|ref|NP_617297.1| - 0.047 13.9 0.1 0.27 11.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|20091222|ref|NP_617297.1| - 0.3 11.7 2.4 1.9 9.1 0.5 3.1 2 1 0 2 2 2 0 AAA domain MULE PF10551.9 gi|20091224|ref|NP_617299.1| - 5.8e-07 29.8 0.0 1.5e-06 28.5 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091224|ref|NP_617299.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091224|ref|NP_617299.1| - 0.023 14.7 0.2 0.063 13.3 0.1 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091224|ref|NP_617299.1| - 0.025 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091224|ref|NP_617299.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091224|ref|NP_617299.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091224|ref|NP_617299.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091224|ref|NP_617299.1| - 0.17 12.0 3.3 0.38 10.8 3.3 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091224|ref|NP_617299.1| - 0.3 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20091224|ref|NP_617299.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091224|ref|NP_617299.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger HisKA PF00512.25 gi|20091225|ref|NP_617300.1| - 0.05 13.6 0.2 0.077 13.0 0.2 1.4 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain DUF2719 PF10891.8 gi|20091227|ref|NP_617302.1| - 0.094 12.6 0.3 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2719) PAS_3 PF08447.12 gi|20091228|ref|NP_617303.1| - 1.6e-40 137.2 0.1 3.9e-15 55.9 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|20091228|ref|NP_617303.1| - 3.7e-29 101.0 0.0 1.7e-09 37.7 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|20091228|ref|NP_617303.1| - 2.2e-23 82.5 1.6 5.7e-08 33.0 0.0 4.7 4 1 1 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|20091228|ref|NP_617303.1| - 3e-20 72.5 0.0 8.1e-06 26.1 0.0 4.2 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|20091228|ref|NP_617303.1| - 7.5e-10 38.6 0.0 0.00026 20.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 gi|20091228|ref|NP_617303.1| - 1.6e-06 28.5 0.0 2.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.6 gi|20091228|ref|NP_617303.1| - 7e-05 22.9 0.0 0.21 11.7 0.0 3.9 4 1 1 5 5 5 1 PAS domain dCache_1 PF02743.18 gi|20091228|ref|NP_617303.1| - 0.0022 17.8 0.4 0.068 12.9 0.0 3.3 3 1 0 3 3 3 1 Cache domain Phage_Gp23 PF10669.9 gi|20091228|ref|NP_617303.1| - 0.018 15.4 0.3 0.05 13.9 0.3 1.7 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) FeS_assembly_P PF01883.19 gi|20091229|ref|NP_617304.1| - 3e-23 81.8 0.1 4e-23 81.4 0.1 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Nitroreductase PF00881.24 gi|20091230|ref|NP_617305.1| - 6.4e-34 117.5 0.0 7.3e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|20091230|ref|NP_617305.1| - 1.8e-08 34.2 0.0 0.00047 19.8 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase His_Phos_1 PF00300.22 gi|20091231|ref|NP_617306.1| - 5.5e-40 137.1 0.0 1.9e-19 70.1 0.0 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) HD PF01966.22 gi|20091232|ref|NP_617307.1| - 4e-07 30.3 1.1 6e-07 29.7 1.1 1.3 1 0 0 1 1 1 1 HD domain Cnd3 PF12719.7 gi|20091233|ref|NP_617308.1| - 0.016 14.4 0.2 0.019 14.2 0.2 1.2 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain ResIII PF04851.15 gi|20091234|ref|NP_617309.1| - 2.2e-24 86.4 0.0 1.9e-23 83.3 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|20091234|ref|NP_617309.1| - 2.4e-20 72.8 0.1 3.6e-20 72.2 0.1 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|20091234|ref|NP_617309.1| - 4.1e-20 71.4 0.0 4.2e-19 68.2 0.0 2.7 3 0 0 3 3 3 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|20091234|ref|NP_617309.1| - 1.9e-16 60.4 0.4 4.4e-16 59.2 0.4 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|20091234|ref|NP_617309.1| - 1.4e-06 28.2 0.0 4.3e-06 26.6 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|20091234|ref|NP_617309.1| - 0.07 13.3 0.2 1.5 9.0 0.0 2.4 1 1 1 2 2 2 0 Helicase C-terminal domain DUF2785 PF10978.8 gi|20091234|ref|NP_617309.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) DUF790 PF05626.11 gi|20091235|ref|NP_617310.1| - 6.8e-116 387.2 4.4 1.7e-81 273.9 0.6 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF790) Sigma_reg_N PF13800.6 gi|20091236|ref|NP_617311.1| - 0.055 13.8 3.1 4.6 7.6 0.2 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Tetraspanin PF00335.20 gi|20091236|ref|NP_617311.1| - 0.17 11.6 1.8 0.21 11.3 1.8 1.1 1 0 0 1 1 1 0 Tetraspanin family TssO PF17561.2 gi|20091236|ref|NP_617311.1| - 1.4 9.0 5.3 1.7 8.7 3.9 1.8 2 0 0 2 2 2 0 Type VI secretion system, TssO DDE_Tnp_ISL3 PF01610.17 gi|20091237|ref|NP_617312.1| - 5.6e-78 262.0 3.2 5.6e-78 262.0 3.2 1.5 2 0 0 2 2 2 1 Transposase zf-ISL3 PF14690.6 gi|20091237|ref|NP_617312.1| - 3.6e-10 40.4 5.8 1.6e-09 38.3 6.2 1.9 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.6 gi|20091237|ref|NP_617312.1| - 4.8e-10 38.7 0.1 4.8e-09 35.5 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.9 gi|20091237|ref|NP_617312.1| - 0.0062 16.9 0.0 0.044 14.2 0.0 2.2 1 1 0 2 2 2 1 MULE transposase domain Lar_restr_allev PF14354.6 gi|20091237|ref|NP_617312.1| - 0.025 14.9 1.8 0.054 13.9 1.2 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF1610 PF07754.11 gi|20091237|ref|NP_617312.1| - 0.047 13.7 0.5 0.094 12.7 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) TPP_enzyme_C PF02775.21 gi|20091238|ref|NP_617313.1| - 5e-26 91.3 0.0 7.5e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Methyltransf_25 PF13649.6 gi|20091239|ref|NP_617314.1| - 1.4e-23 83.4 0.0 2.6e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091239|ref|NP_617314.1| - 2.4e-22 79.4 0.0 4e-22 78.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091239|ref|NP_617314.1| - 4e-19 68.9 0.0 1.1e-18 67.5 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|20091239|ref|NP_617314.1| - 2.3e-15 56.7 0.0 2.8e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091239|ref|NP_617314.1| - 4.5e-12 46.6 0.0 7.9e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20091239|ref|NP_617314.1| - 1.3e-10 41.0 0.0 2.2e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|20091239|ref|NP_617314.1| - 3.9e-09 36.6 0.0 5.1e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20091239|ref|NP_617314.1| - 1.8e-08 34.4 0.0 2.3e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.17 gi|20091239|ref|NP_617314.1| - 5.7e-08 32.2 0.0 1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.10 gi|20091239|ref|NP_617314.1| - 1e-05 25.3 0.0 1.4e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.17 gi|20091239|ref|NP_617314.1| - 2.6e-05 23.7 0.0 0.0001 21.8 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase UPF0020 PF01170.18 gi|20091239|ref|NP_617314.1| - 2.9e-05 23.8 0.0 0.00088 19.0 0.0 2.1 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.18 gi|20091239|ref|NP_617314.1| - 0.00018 20.9 0.0 0.00021 20.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Fibrillarin PF01269.17 gi|20091239|ref|NP_617314.1| - 0.0004 19.6 0.0 0.00079 18.6 0.0 1.5 2 0 0 2 2 2 1 Fibrillarin MTS PF05175.14 gi|20091239|ref|NP_617314.1| - 0.00043 19.9 0.0 0.0012 18.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain ADH_zinc_N PF00107.26 gi|20091239|ref|NP_617314.1| - 0.0006 19.8 0.0 0.4 10.7 0.0 2.2 2 0 0 2 2 2 2 Zinc-binding dehydrogenase DOT1 PF08123.13 gi|20091239|ref|NP_617314.1| - 0.0036 16.8 0.0 0.0052 16.3 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.13 gi|20091239|ref|NP_617314.1| - 0.0075 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|20091239|ref|NP_617314.1| - 0.0076 16.1 0.0 0.073 12.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.6 gi|20091239|ref|NP_617314.1| - 0.023 15.7 0.0 0.037 15.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|20091239|ref|NP_617314.1| - 0.023 14.4 0.0 0.22 11.2 0.0 2.0 2 0 0 2 2 2 0 DNA methylase DREV PF05219.12 gi|20091239|ref|NP_617314.1| - 0.066 12.3 0.0 8.6 5.4 0.0 2.1 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_18 PF12847.7 gi|20091239|ref|NP_617314.1| - 0.11 12.5 0.0 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain DUF938 PF06080.12 gi|20091239|ref|NP_617314.1| - 0.12 12.1 0.0 0.63 9.8 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF938) FtsJ PF01728.19 gi|20091239|ref|NP_617314.1| - 0.12 12.5 0.0 0.61 10.2 0.0 1.8 1 1 0 2 2 2 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|20091239|ref|NP_617314.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|20091239|ref|NP_617314.1| - 0.14 11.9 0.1 0.3 10.8 0.1 1.5 1 1 0 1 1 1 0 Lysine methyltransferase RrnaAD PF00398.20 gi|20091239|ref|NP_617314.1| - 0.15 11.1 0.0 0.23 10.5 0.0 1.3 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase SDH_sah PF01972.16 gi|20091240|ref|NP_617315.1| - 7.8e-82 274.5 0.1 8.6e-82 274.3 0.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.18 gi|20091240|ref|NP_617315.1| - 0.00033 20.6 0.0 0.002 18.1 0.0 2.0 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 gi|20091240|ref|NP_617315.1| - 0.0079 16.1 0.0 0.022 14.6 0.0 1.7 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|20091240|ref|NP_617315.1| - 0.13 11.5 0.0 0.49 9.7 0.0 1.9 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase Radical_SAM PF04055.21 gi|20091241|ref|NP_617316.1| - 1.9e-07 31.6 0.3 4.5e-07 30.4 0.3 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20091241|ref|NP_617316.1| - 0.009 16.3 0.8 0.024 14.9 0.4 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain DUF1016_N PF17761.1 gi|20091243|ref|NP_617318.1| - 1.2e-44 151.8 0.2 5.1e-44 149.8 0.1 1.9 2 0 0 2 2 2 1 DUF1016 N-terminal domain YhcG_C PF06250.11 gi|20091243|ref|NP_617318.1| - 1.5e-43 148.3 0.2 2.8e-43 147.4 0.2 1.4 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain HATPase_c_4 PF13749.6 gi|20091244|ref|NP_617319.1| - 1.4e-20 73.2 0.0 3.5e-20 71.9 0.0 1.7 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal DUF4062 PF13271.6 gi|20091244|ref|NP_617319.1| - 3.9e-18 65.6 0.1 2.2e-17 63.2 0.0 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4062) HTH_DeoR PF08220.12 gi|20091244|ref|NP_617319.1| - 0.00021 21.0 0.1 0.00044 19.9 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Phage_rep_O PF04492.13 gi|20091244|ref|NP_617319.1| - 0.14 12.8 0.6 0.78 10.4 0.1 2.5 2 1 0 2 2 2 0 Bacteriophage replication protein O N6_Mtase PF02384.16 gi|20091245|ref|NP_617320.1| - 3.6e-57 194.0 0.0 6.6e-57 193.1 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase UPF0020 PF01170.18 gi|20091245|ref|NP_617320.1| - 1.9e-10 40.7 0.0 3.3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|20091245|ref|NP_617320.1| - 0.047 13.5 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091245|ref|NP_617320.1| - 0.068 13.9 0.2 0.61 10.8 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091245|ref|NP_617320.1| - 0.14 11.4 0.0 0.61 9.4 0.0 1.9 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methylase_S PF01420.19 gi|20091246|ref|NP_617321.1| - 7.9e-33 114.0 0.0 5.8e-22 78.7 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF262 PF03235.14 gi|20091248|ref|NP_617323.1| - 3.1e-35 122.3 0.6 3.1e-35 122.3 0.6 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|20091248|ref|NP_617323.1| - 5.4e-27 94.4 1.7 9.7e-27 93.5 1.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) ResIII PF04851.15 gi|20091249|ref|NP_617324.1| - 2.5e-36 125.3 0.0 7.2e-36 123.8 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.10 gi|20091249|ref|NP_617324.1| - 2.8e-22 79.6 4.4 4.7e-22 78.9 0.0 2.8 2 0 0 2 2 2 1 EcoEI R protein C-terminal SWI2_SNF2 PF18766.1 gi|20091249|ref|NP_617324.1| - 2.3e-18 66.7 0.0 5.1e-18 65.6 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|20091249|ref|NP_617324.1| - 2.3e-11 44.0 0.0 1.2e-05 25.3 0.0 2.8 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) DUF4145 PF13643.6 gi|20091249|ref|NP_617324.1| - 8.5e-11 41.8 0.0 2.7e-10 40.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) Helicase_C PF00271.31 gi|20091249|ref|NP_617324.1| - 8.7e-08 32.5 0.0 2.6e-07 30.9 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|20091249|ref|NP_617324.1| - 1.2e-06 28.4 0.0 3.9e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase HSDR_N_2 PF13588.6 gi|20091249|ref|NP_617324.1| - 9.6e-06 25.6 0.0 2.4e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF2075 PF09848.9 gi|20091249|ref|NP_617324.1| - 0.008 15.5 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) BRE1 PF08647.11 gi|20091249|ref|NP_617324.1| - 0.035 14.2 6.2 0.094 12.8 6.2 1.7 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase Snapin_Pallidin PF14712.6 gi|20091249|ref|NP_617324.1| - 0.085 13.3 2.6 0.3 11.5 2.6 2.0 1 0 0 1 1 1 0 Snapin/Pallidin SAM_KSR1 PF13543.6 gi|20091249|ref|NP_617324.1| - 0.097 12.8 0.8 0.23 11.6 0.8 1.6 1 0 0 1 1 1 0 SAM like domain present in kinase suppressor RAS 1 AAA_11 PF13086.6 gi|20091249|ref|NP_617324.1| - 0.1 12.4 0.2 41 3.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain Fez1 PF06818.15 gi|20091249|ref|NP_617324.1| - 0.3 11.5 4.9 0.068 13.6 0.7 2.0 2 0 0 2 2 2 0 Fez1 APG6_N PF17675.1 gi|20091249|ref|NP_617324.1| - 1.4 9.5 10.3 0.09 13.3 4.2 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4423 PF14394.6 gi|20091250|ref|NP_617325.1| - 0.087 12.5 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|20091252|ref|NP_617327.1| - 1.2e-12 47.6 0.0 1.6e-05 24.7 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|20091252|ref|NP_617327.1| - 6.6e-11 42.1 0.0 5.3e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|20091252|ref|NP_617327.1| - 2.2e-10 40.3 0.1 2.4e-06 27.4 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|20091252|ref|NP_617327.1| - 2.3e-10 40.1 0.0 9.2e-05 22.2 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20091252|ref|NP_617327.1| - 3.2e-10 39.8 0.0 0.00023 21.0 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|20091252|ref|NP_617327.1| - 4.2e-10 39.0 0.0 0.00019 20.9 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|20091252|ref|NP_617327.1| - 1.5e-08 34.7 0.1 0.00045 20.3 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|20091252|ref|NP_617327.1| - 1.7e-08 34.3 0.1 0.0016 18.4 0.0 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|20091252|ref|NP_617327.1| - 1.8e-08 34.1 0.1 0.0076 16.1 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20091252|ref|NP_617327.1| - 1.1e-07 31.7 0.3 0.00077 19.3 0.0 2.4 2 0 0 2 2 2 2 HTH domain HTH_36 PF13730.6 gi|20091252|ref|NP_617327.1| - 3.2e-07 30.2 0.0 0.024 14.6 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.6 gi|20091252|ref|NP_617327.1| - 5.5e-07 30.0 0.0 0.051 14.1 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|20091252|ref|NP_617327.1| - 2.7e-06 27.4 0.0 0.039 14.1 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain GntR PF00392.21 gi|20091252|ref|NP_617327.1| - 4.2e-06 26.3 0.0 0.025 14.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|20091252|ref|NP_617327.1| - 2.7e-05 24.2 0.0 0.046 13.9 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain DUF1441 PF07278.11 gi|20091252|ref|NP_617327.1| - 9.5e-05 22.4 0.0 0.31 10.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1441) Sigma54_DBD PF04552.13 gi|20091252|ref|NP_617327.1| - 0.00022 21.0 0.2 0.011 15.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-54, DNA binding domain HTH_1 PF00126.27 gi|20091252|ref|NP_617327.1| - 0.0003 20.7 0.1 0.15 12.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 gi|20091252|ref|NP_617327.1| - 0.00036 19.9 0.1 0.83 9.1 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 PaaX PF07848.12 gi|20091252|ref|NP_617327.1| - 0.00057 20.1 0.1 1.1 9.6 0.0 2.6 2 1 0 2 2 2 2 PaaX-like protein HTH_AsnC-type PF13404.6 gi|20091252|ref|NP_617327.1| - 0.0014 18.4 0.2 0.14 12.0 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_41 PF14502.6 gi|20091252|ref|NP_617327.1| - 0.0015 18.1 0.1 0.21 11.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|20091252|ref|NP_617327.1| - 0.0018 18.5 0.2 0.35 11.2 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator Cdc6_C PF09079.11 gi|20091252|ref|NP_617327.1| - 0.0023 17.9 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain HTH_23 PF13384.6 gi|20091252|ref|NP_617327.1| - 0.0024 17.6 0.0 2.7 7.9 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_40 PF14493.6 gi|20091252|ref|NP_617327.1| - 0.0024 18.3 0.0 1.1 9.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|20091252|ref|NP_617327.1| - 0.003 18.1 0.1 3.5 8.3 0.0 2.4 2 0 0 2 2 2 1 Bacteriophage replication protein O HTH_54 PF18607.1 gi|20091252|ref|NP_617327.1| - 0.0035 17.4 0.0 0.25 11.4 0.0 2.5 2 0 0 2 2 2 1 ParA helix turn helix domain HTH_29 PF13551.6 gi|20091252|ref|NP_617327.1| - 0.0035 17.3 0.0 3 7.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix DUF4423 PF14394.6 gi|20091252|ref|NP_617327.1| - 0.006 16.3 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_38 PF13936.6 gi|20091252|ref|NP_617327.1| - 0.0079 15.9 0.5 0.041 13.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|20091252|ref|NP_617327.1| - 0.0087 16.4 0.0 1.2 9.5 0.0 2.7 2 1 0 2 2 2 1 Penicillinase repressor Rio2_N PF09202.11 gi|20091252|ref|NP_617327.1| - 0.015 15.5 0.1 1.4 9.2 0.0 2.5 2 0 0 2 2 2 0 Rio2, N-terminal DUF746 PF05344.11 gi|20091252|ref|NP_617327.1| - 0.022 14.6 0.0 4 7.4 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) SMC_ScpB PF04079.16 gi|20091252|ref|NP_617327.1| - 0.033 13.8 0.0 0.081 12.5 0.0 1.6 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_30 PF13556.6 gi|20091252|ref|NP_617327.1| - 0.037 13.8 0.0 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HicA_toxin PF07927.12 gi|20091252|ref|NP_617327.1| - 0.037 14.1 0.1 0.08 13.0 0.1 1.5 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Nup35_RRM PF05172.13 gi|20091252|ref|NP_617327.1| - 0.038 14.0 0.2 0.14 12.1 0.1 1.9 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif FAM91_N PF14647.6 gi|20091252|ref|NP_617327.1| - 0.038 13.3 0.1 0.7 9.1 0.0 2.2 2 0 0 2 2 2 0 FAM91 N-terminus HTH_3 PF01381.22 gi|20091252|ref|NP_617327.1| - 0.04 14.0 0.2 13 5.9 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix DprA_WH PF17782.1 gi|20091252|ref|NP_617327.1| - 0.04 14.0 0.1 6.7 6.9 0.0 2.3 2 0 0 2 2 2 0 DprA winged helix domain Sod_Cu PF00080.20 gi|20091253|ref|NP_617328.1| - 5.7e-42 143.3 1.0 7e-42 143.0 1.0 1.1 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) CTP_transf_like PF01467.26 gi|20091254|ref|NP_617329.1| - 9.6e-09 35.6 0.0 1.5e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like GRASP55_65 PF04495.14 gi|20091254|ref|NP_617329.1| - 0.096 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain B12-binding PF02310.19 gi|20091255|ref|NP_617330.1| - 4.2e-27 94.6 1.3 8.8e-27 93.6 0.5 1.8 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|20091255|ref|NP_617330.1| - 2e-19 69.8 0.7 5.1e-19 68.5 0.7 1.7 1 0 0 1 1 1 1 B12 binding domain Dimeth_Pyl PF09505.10 gi|20091256|ref|NP_617331.1| - 1.3e-261 868.0 9.3 1.4e-261 867.8 9.3 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) AA_permease_2 PF13520.6 gi|20091257|ref|NP_617332.1| - 1e-64 219.0 47.0 1.2e-64 218.7 47.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|20091257|ref|NP_617332.1| - 2.4e-13 49.5 40.1 1.1e-12 47.4 40.2 1.7 1 1 0 1 1 1 1 Amino acid permease AAA_14 PF13173.6 gi|20091258|ref|NP_617333.1| - 6e-23 81.3 0.0 1e-22 80.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|20091258|ref|NP_617333.1| - 2.7e-08 34.0 0.0 5e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|20091258|ref|NP_617333.1| - 0.0014 18.6 0.1 0.011 15.6 0.1 2.2 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|20091258|ref|NP_617333.1| - 0.077 13.4 0.0 0.16 12.4 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1480 PF07351.13 gi|20091258|ref|NP_617333.1| - 0.21 11.9 0.0 0.85 9.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1480) zinc_ribbon_13 PF09855.9 gi|20091259|ref|NP_617334.1| - 1.6e-05 25.0 2.4 0.00013 22.1 2.4 2.1 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF35_N PF12172.8 gi|20091259|ref|NP_617334.1| - 0.007 16.2 0.2 0.84 9.6 0.1 2.3 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|20091259|ref|NP_617334.1| - 0.012 15.3 2.9 0.053 13.3 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|20091259|ref|NP_617334.1| - 0.014 14.9 4.1 0.49 9.9 4.5 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|20091259|ref|NP_617334.1| - 0.025 14.9 1.5 0.049 14.0 1.5 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|20091259|ref|NP_617334.1| - 0.062 12.7 0.2 0.062 12.7 0.2 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-RVT PF13966.6 gi|20091259|ref|NP_617334.1| - 0.073 13.8 0.4 1.4 9.7 0.1 2.0 1 1 1 2 2 2 0 zinc-binding in reverse transcriptase PhnA_Zn_Ribbon PF08274.12 gi|20091259|ref|NP_617334.1| - 0.12 12.4 0.7 0.12 12.4 0.7 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|20091259|ref|NP_617334.1| - 0.26 11.3 1.6 2.1 8.4 0.2 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|20091259|ref|NP_617334.1| - 0.3 11.1 2.9 2.7 8.0 0.3 2.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|20091259|ref|NP_617334.1| - 0.81 9.6 5.6 4.2 7.3 0.6 2.5 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) MAF_flag10 PF01973.18 gi|20091261|ref|NP_617336.1| - 2.3e-29 102.3 0.0 2.9e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 tRNA-synt_1 PF00133.22 gi|20091262|ref|NP_617337.1| - 3.5e-189 629.9 1.5 4.6e-189 629.6 1.5 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|20091262|ref|NP_617337.1| - 6.6e-36 123.6 0.2 1.7e-35 122.2 0.2 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|20091262|ref|NP_617337.1| - 2.1e-22 79.4 0.9 1.2e-09 37.4 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|20091262|ref|NP_617337.1| - 8.7e-05 22.0 0.0 0.00027 20.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|20091262|ref|NP_617337.1| - 0.0066 15.4 0.0 0.066 12.1 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|20091262|ref|NP_617337.1| - 0.011 15.3 0.1 0.011 15.3 0.1 2.4 3 1 0 3 3 3 0 Leucyl-tRNA synthetase, Domain 2 IBR PF01485.21 gi|20091262|ref|NP_617337.1| - 0.09 13.0 1.6 0.59 10.4 0.0 2.7 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain NS3_envE PF02723.14 gi|20091263|ref|NP_617338.1| - 0.04 14.0 1.1 0.04 14.0 1.1 4.4 4 1 1 5 5 5 0 Non-structural protein NS3/Small envelope protein E NDUF_B4 PF07225.12 gi|20091263|ref|NP_617338.1| - 1 9.2 2.6 2.6 8.0 0.0 2.7 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) ATP-synt PF00231.19 gi|20091264|ref|NP_617339.1| - 2.4e-57 194.8 0.0 2.7e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 ATP synthase ATP-synt_ab PF00006.25 gi|20091265|ref|NP_617340.1| - 5.1e-69 232.2 0.0 7.5e-69 231.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 gi|20091265|ref|NP_617340.1| - 2.3e-34 118.4 0.0 3.7e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 gi|20091265|ref|NP_617340.1| - 2.6e-08 34.3 1.0 6.2e-08 33.0 1.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 gi|20091265|ref|NP_617340.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 KaiC ATP-synt_B PF00430.18 gi|20091266|ref|NP_617341.1| - 1.4e-14 54.3 23.7 1.4e-14 54.3 23.7 2.0 2 0 0 2 2 2 1 ATP synthase B/B' CF(0) DUF3435 PF11917.8 gi|20091266|ref|NP_617341.1| - 0.054 12.4 12.1 0.09 11.7 12.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) SLC12 PF03522.15 gi|20091266|ref|NP_617341.1| - 4.1 6.3 14.0 0.83 8.6 3.4 2.1 2 0 0 2 2 2 0 Solute carrier family 12 CPSF100_C PF13299.6 gi|20091266|ref|NP_617341.1| - 5.8 7.1 15.4 7.5 6.7 3.3 2.5 2 0 0 2 2 2 0 Cleavage and polyadenylation factor 2 C-terminal ATP-synt_C PF00137.21 gi|20091267|ref|NP_617342.1| - 8.7e-13 48.4 5.5 8.8e-13 48.4 5.0 1.3 1 1 0 1 1 1 1 ATP synthase subunit C DUF4220 PF13968.6 gi|20091267|ref|NP_617342.1| - 0.11 11.9 1.0 0.11 11.9 1.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4220) DUF1180 PF06679.12 gi|20091267|ref|NP_617342.1| - 0.17 12.3 0.6 0.19 12.1 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) ATP-synt_A PF00119.20 gi|20091268|ref|NP_617343.1| - 1.2e-46 159.4 13.5 1.4e-46 159.2 13.5 1.0 1 0 0 1 1 1 1 ATP synthase A chain AtpR PF12966.7 gi|20091269|ref|NP_617344.1| - 2.3e-31 108.1 12.2 2.7e-31 107.8 12.2 1.0 1 0 0 1 1 1 1 N-ATPase, AtpR subunit DUF2157 PF09925.9 gi|20091269|ref|NP_617344.1| - 0.32 10.8 9.2 0.54 10.0 9.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Peptidase_U4 PF03419.13 gi|20091269|ref|NP_617344.1| - 0.64 9.3 3.0 1.1 8.5 3.0 1.4 1 1 0 1 1 1 0 Sporulation factor SpoIIGA ATPase_gene1 PF09527.10 gi|20091270|ref|NP_617345.1| - 8.4e-15 54.7 9.0 1.1e-14 54.3 9.0 1.2 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter MCU PF04678.13 gi|20091270|ref|NP_617345.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial calcium uniporter DUF4131 PF13567.6 gi|20091270|ref|NP_617345.1| - 0.27 10.9 2.3 0.29 10.8 1.4 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ATP-synt_DE_N PF02823.16 gi|20091271|ref|NP_617346.1| - 8.7e-17 60.8 0.1 1.9e-16 59.7 0.0 1.5 2 0 0 2 2 2 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_ab PF00006.25 gi|20091272|ref|NP_617347.1| - 3.5e-64 216.4 0.0 5.6e-64 215.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|20091272|ref|NP_617347.1| - 2.4e-11 44.0 0.1 4.8e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 gi|20091272|ref|NP_617347.1| - 0.021 14.7 2.9 0.037 13.9 1.2 2.3 2 1 0 2 2 2 0 T3SS EscN ATPase C-terminal domain ABC_tran PF00005.27 gi|20091272|ref|NP_617347.1| - 0.051 14.1 0.0 0.19 12.2 0.0 1.9 2 0 0 2 2 2 0 ABC transporter TrwB_AAD_bind PF10412.9 gi|20091272|ref|NP_617347.1| - 0.071 12.0 0.2 0.22 10.4 0.1 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.6 gi|20091272|ref|NP_617347.1| - 0.089 13.1 0.1 0.25 11.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain DUF1269 PF06897.12 gi|20091273|ref|NP_617348.1| - 5.1e-36 123.0 0.1 8.3e-36 122.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) PTS_EIIC_2 PF13303.6 gi|20091273|ref|NP_617348.1| - 0.044 12.8 0.1 0.054 12.5 0.1 1.1 1 0 0 1 1 1 0 Phosphotransferase system, EIIC Bacteriocin_IIc PF10439.9 gi|20091273|ref|NP_617348.1| - 0.54 10.4 8.9 1 9.5 8.9 1.5 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Acetyltransf_10 PF13673.7 gi|20091274|ref|NP_617349.1| - 7.6e-18 64.7 0.1 9.3e-18 64.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20091274|ref|NP_617349.1| - 2.7e-11 43.7 0.1 3.8e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20091274|ref|NP_617349.1| - 8.6e-10 38.9 0.1 1.2e-09 38.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 gi|20091274|ref|NP_617349.1| - 0.00026 21.6 0.1 0.0012 19.5 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20091274|ref|NP_617349.1| - 0.00049 20.0 0.0 0.00082 19.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein ATPase PF06745.13 gi|20091275|ref|NP_617350.1| - 6.5e-64 215.4 0.0 7.3e-64 215.3 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|20091275|ref|NP_617350.1| - 3.2e-05 22.7 0.0 0.072 11.7 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein RecA PF00154.21 gi|20091275|ref|NP_617350.1| - 0.0001 21.9 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|20091275|ref|NP_617350.1| - 0.00051 19.7 0.0 0.00095 18.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|20091275|ref|NP_617350.1| - 0.0019 17.6 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|20091275|ref|NP_617350.1| - 0.0021 17.4 0.0 0.0026 17.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|20091275|ref|NP_617350.1| - 0.0025 17.9 0.0 0.0033 17.4 0.0 1.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Rad51 PF08423.11 gi|20091275|ref|NP_617350.1| - 0.019 14.2 0.1 0.037 13.3 0.0 1.6 2 0 0 2 2 2 0 Rad51 AAA_14 PF13173.6 gi|20091275|ref|NP_617350.1| - 0.024 14.7 0.1 0.087 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|20091275|ref|NP_617350.1| - 0.049 13.4 0.2 1.3 8.7 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|20091275|ref|NP_617350.1| - 0.061 13.2 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 NTPase Sigma54_activat PF00158.26 gi|20091275|ref|NP_617350.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|20091275|ref|NP_617350.1| - 0.089 13.1 0.6 0.9 9.8 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|20091275|ref|NP_617350.1| - 0.091 12.5 0.0 0.14 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|20091275|ref|NP_617350.1| - 0.16 11.1 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein T2SSE PF00437.20 gi|20091275|ref|NP_617350.1| - 0.17 10.9 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein MEDS PF14417.6 gi|20091275|ref|NP_617350.1| - 0.18 11.6 0.0 0.6 9.9 0.0 1.7 1 1 1 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain MetOD1 PF18546.1 gi|20091276|ref|NP_617351.1| - 8.9e-45 152.4 1.4 1.3e-44 151.9 1.4 1.2 1 0 0 1 1 1 1 Metanogen output domain 1 Response_reg PF00072.24 gi|20091276|ref|NP_617351.1| - 1.2e-29 102.7 0.2 2.3e-29 101.8 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain ATPase PF06745.13 gi|20091277|ref|NP_617352.1| - 2.9e-45 154.4 0.1 3.3e-45 154.2 0.1 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|20091277|ref|NP_617352.1| - 3.4e-07 30.0 0.2 3.3e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 recA bacterial DNA recombination protein NTPase_1 PF03266.15 gi|20091277|ref|NP_617352.1| - 4.5e-06 26.7 0.9 2e-05 24.6 0.9 2.0 1 1 0 1 1 1 1 NTPase DnaB_C PF03796.15 gi|20091277|ref|NP_617352.1| - 5.3e-06 25.9 0.0 4.5e-05 22.9 0.0 2.3 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|20091277|ref|NP_617352.1| - 2.3e-05 23.8 0.0 2.7e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) GvpD PF07088.11 gi|20091277|ref|NP_617352.1| - 2.8e-05 22.9 0.1 5.8e-05 21.9 0.1 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|20091277|ref|NP_617352.1| - 9.7e-05 22.2 0.0 0.0024 17.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|20091277|ref|NP_617352.1| - 0.00013 21.6 0.4 0.0009 18.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|20091277|ref|NP_617352.1| - 0.00014 21.9 0.0 0.00024 21.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|20091277|ref|NP_617352.1| - 0.00015 21.4 0.4 0.00095 18.8 0.2 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|20091277|ref|NP_617352.1| - 0.0003 21.1 0.1 0.00074 19.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20091277|ref|NP_617352.1| - 0.00033 21.1 0.0 0.00043 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DEAD PF00270.29 gi|20091277|ref|NP_617352.1| - 0.00085 19.1 0.0 0.0015 18.3 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA PF00004.29 gi|20091277|ref|NP_617352.1| - 0.0032 17.9 0.5 0.026 14.9 0.5 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|20091277|ref|NP_617352.1| - 0.0034 17.1 0.2 0.0074 16.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.12 gi|20091277|ref|NP_617352.1| - 0.0036 17.1 1.0 0.0079 15.9 0.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF835) ResIII PF04851.15 gi|20091277|ref|NP_617352.1| - 0.0056 16.7 0.0 0.0094 16.0 0.0 1.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|20091277|ref|NP_617352.1| - 0.0079 15.3 0.1 0.023 13.7 0.1 1.7 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|20091277|ref|NP_617352.1| - 0.014 15.5 0.1 0.082 12.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|20091277|ref|NP_617352.1| - 0.019 14.6 0.1 0.073 12.8 0.1 1.9 1 1 0 1 1 1 0 Guanylate kinase AAA_18 PF13238.6 gi|20091277|ref|NP_617352.1| - 0.022 15.3 0.6 0.048 14.2 0.6 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|20091277|ref|NP_617352.1| - 0.026 14.9 0.1 0.043 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|20091277|ref|NP_617352.1| - 0.031 14.1 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DAP3 PF10236.9 gi|20091277|ref|NP_617352.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|20091277|ref|NP_617352.1| - 0.18 11.5 0.0 0.35 10.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|20091277|ref|NP_617352.1| - 0.19 11.5 0.6 0.34 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain TrkA_N PF02254.18 gi|20091278|ref|NP_617353.1| - 1.1e-25 90.2 2.4 1e-24 87.0 0.2 2.2 1 1 1 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|20091278|ref|NP_617353.1| - 8.1e-15 54.4 0.0 1.7e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_2 PF03446.15 gi|20091278|ref|NP_617353.1| - 0.033 14.4 0.2 0.062 13.5 0.1 1.6 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|20091278|ref|NP_617353.1| - 0.037 14.5 0.0 0.36 11.3 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|20091279|ref|NP_617354.1| - 1.9e-23 82.9 0.9 3.7e-23 82.0 0.9 1.5 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|20091279|ref|NP_617354.1| - 1e-14 54.2 9.8 1.6e-14 53.6 9.8 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|20091279|ref|NP_617354.1| - 8.7e-13 47.9 0.1 3.8e-12 45.9 0.0 2.2 3 0 0 3 3 3 1 TrkA-C domain Ion_trans PF00520.31 gi|20091279|ref|NP_617354.1| - 0.00084 18.6 4.0 0.0013 18.0 4.0 1.2 1 0 0 1 1 1 1 Ion transport protein Castor_Poll_mid PF06241.12 gi|20091279|ref|NP_617354.1| - 0.0051 16.8 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Castor and Pollux, part of voltage-gated ion channel ADH_zinc_N PF00107.26 gi|20091279|ref|NP_617354.1| - 0.11 12.4 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Peptidase_A24 PF01478.18 gi|20091279|ref|NP_617354.1| - 0.52 10.7 4.7 0.87 10.0 4.7 1.3 1 0 0 1 1 1 0 Type IV leader peptidase family Peptidase_M50 PF02163.22 gi|20091280|ref|NP_617355.1| - 3e-20 72.6 0.0 1.1e-19 70.7 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|20091280|ref|NP_617355.1| - 1.5e-16 60.5 0.0 5.9e-09 36.1 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|20091280|ref|NP_617355.1| - 1.6e-11 43.8 0.0 0.00014 21.7 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|20091280|ref|NP_617355.1| - 3.9e-06 27.1 0.1 0.043 14.2 0.0 2.5 2 0 0 2 2 2 2 PDZ domain PDZ_1 PF12812.7 gi|20091280|ref|NP_617355.1| - 0.02 14.9 0.0 0.87 9.6 0.0 2.4 2 0 0 2 2 2 0 PDZ-like domain Tricorn_PDZ PF14685.6 gi|20091280|ref|NP_617355.1| - 0.074 13.0 0.1 10 6.1 0.0 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain CutA1 PF03091.15 gi|20091281|ref|NP_617356.1| - 8.5e-32 109.0 0.2 9.5e-32 108.8 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein SWI2_SNF2 PF18766.1 gi|20091282|ref|NP_617357.1| - 2.3e-45 155.0 0.0 3.1e-45 154.6 0.0 1.2 1 0 0 1 1 1 1 SWI2/SNF2 ATPase ResIII PF04851.15 gi|20091282|ref|NP_617357.1| - 2.6e-12 47.1 0.0 3.6e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF1258 PF06869.12 gi|20091282|ref|NP_617357.1| - 0.13 11.7 0.1 0.19 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) DUF2989 PF11207.8 gi|20091283|ref|NP_617358.1| - 0.0004 20.2 0.3 0.1 12.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2989) DUF615 PF04751.14 gi|20091283|ref|NP_617358.1| - 0.035 14.1 0.1 0.19 11.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF615) Glyco_hydro_31 PF01055.26 gi|20091283|ref|NP_617358.1| - 0.16 11.1 4.1 0.083 12.1 1.3 1.7 1 1 1 2 2 2 0 Glycosyl hydrolases family 31 DUF2811 PF10929.8 gi|20091283|ref|NP_617358.1| - 0.18 12.1 0.9 24 5.3 0.1 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2811) TerB_C PF15615.6 gi|20091284|ref|NP_617359.1| - 0.037 14.3 0.5 0.065 13.5 0.5 1.6 1 1 0 1 1 1 0 TerB-C domain L31 PF09784.9 gi|20091284|ref|NP_617359.1| - 0.13 12.7 1.6 0.45 11.0 1.6 2.0 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 VWA PF00092.28 gi|20091285|ref|NP_617360.1| - 3.6e-18 66.4 0.1 7.6e-18 65.4 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain SBP_bac_11 PF13531.6 gi|20091285|ref|NP_617360.1| - 7.7e-12 45.4 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VWA_2 PF13519.6 gi|20091285|ref|NP_617360.1| - 2.7e-11 44.1 0.0 5e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain TelA PF05816.11 gi|20091286|ref|NP_617361.1| - 5.5e-78 262.3 23.9 7.3e-78 261.9 23.9 1.2 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) DUF148 PF02520.17 gi|20091286|ref|NP_617361.1| - 0.064 13.4 0.7 0.064 13.4 0.7 4.6 3 2 1 5 5 5 0 Domain of unknown function DUF148 bPH_4 PF06713.11 gi|20091286|ref|NP_617361.1| - 0.067 13.3 0.4 0.17 12.0 0.4 1.6 1 0 0 1 1 1 0 Bacterial PH domain PMC2NT PF08066.12 gi|20091286|ref|NP_617361.1| - 0.57 10.9 3.7 0.74 10.5 0.7 2.6 2 0 0 2 2 2 0 PMC2NT (NUC016) domain Fib_alpha PF08702.10 gi|20091286|ref|NP_617361.1| - 0.78 9.9 26.9 11 6.1 10.1 4.0 2 1 2 4 4 4 0 Fibrinogen alpha/beta chain family TFA2_Winged_2 PF18121.1 gi|20091286|ref|NP_617361.1| - 1.1 9.0 4.2 1.7 8.4 0.0 3.6 3 2 2 5 5 5 0 TFA2 Winged helix domain 2 DUF2203 PF09969.9 gi|20091286|ref|NP_617361.1| - 3.9 8.2 12.3 10 6.8 0.3 4.6 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) PNK3P PF08645.11 gi|20091286|ref|NP_617361.1| - 6.4 6.5 8.4 0.85 9.3 2.8 2.2 2 1 1 3 3 3 0 Polynucleotide kinase 3 phosphatase NosD PF05048.13 gi|20091288|ref|NP_617363.1| - 2.3e-48 164.6 29.5 2.3e-48 164.6 29.5 1.6 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20091288|ref|NP_617363.1| - 3.3e-20 72.5 55.6 1.4e-13 51.0 22.1 2.6 1 1 2 3 3 3 3 Right handed beta helix region Thioredoxin PF00085.20 gi|20091288|ref|NP_617363.1| - 2.8e-10 40.1 0.0 5.3e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Pectinesterase PF01095.19 gi|20091288|ref|NP_617363.1| - 0.0017 17.2 0.6 0.0029 16.4 0.1 1.6 2 0 0 2 2 2 1 Pectinesterase Thioredoxin_8 PF13905.6 gi|20091288|ref|NP_617363.1| - 0.006 16.9 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like DIM1 PF02966.16 gi|20091288|ref|NP_617363.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredox_DsbH PF03190.15 gi|20091288|ref|NP_617363.1| - 0.058 13.4 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF255 Thioredoxin_3 PF13192.6 gi|20091288|ref|NP_617363.1| - 0.06 13.4 0.0 0.21 11.6 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|20091288|ref|NP_617363.1| - 0.079 13.2 0.0 0.29 11.3 0.0 1.9 2 0 0 2 2 2 0 Thioredoxin-like TraF PF13728.6 gi|20091288|ref|NP_617363.1| - 0.087 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_6 PF13848.6 gi|20091288|ref|NP_617363.1| - 0.098 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|20091288|ref|NP_617363.1| - 0.17 11.8 0.0 0.36 10.8 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family PPDK_N PF01326.19 gi|20091289|ref|NP_617364.1| - 3.6e-90 302.6 0.0 1.1e-89 300.9 0.0 1.7 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|20091289|ref|NP_617364.1| - 3.4e-23 81.1 0.0 1e-22 79.6 0.0 1.8 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain RBFA PF02033.18 gi|20091290|ref|NP_617365.1| - 0.02 15.3 0.1 0.033 14.7 0.1 1.5 1 1 0 1 1 1 0 Ribosome-binding factor A zf-C3H2C3 PF17122.5 gi|20091290|ref|NP_617365.1| - 0.2 11.7 0.4 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger Glycos_transf_2 PF00535.26 gi|20091293|ref|NP_617368.1| - 7e-36 123.6 0.0 9.7e-36 123.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20091293|ref|NP_617368.1| - 4.5e-34 118.3 0.0 5.9e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|20091293|ref|NP_617368.1| - 3.3e-19 69.0 0.0 5.5e-19 68.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|20091293|ref|NP_617368.1| - 2.3e-17 63.6 7.8 1.4e-16 61.0 7.8 2.2 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|20091293|ref|NP_617368.1| - 8.3e-14 51.7 0.0 3.3e-13 49.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|20091293|ref|NP_617368.1| - 0.00062 20.2 0.0 0.0012 19.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Chitin_synth_2 PF03142.15 gi|20091293|ref|NP_617368.1| - 0.055 12.1 12.0 2 6.9 0.0 3.1 3 0 0 3 3 3 0 Chitin synthase GNT-I PF03071.15 gi|20091293|ref|NP_617368.1| - 0.06 12.1 0.1 0.087 11.6 0.1 1.1 1 0 0 1 1 1 0 GNT-I family Glyco_tranf_2_5 PF13712.6 gi|20091293|ref|NP_617368.1| - 0.092 12.4 0.1 2.7 7.6 0.0 2.7 2 1 0 3 3 3 0 Glycosyltransferase like family SPC25 PF06703.11 gi|20091293|ref|NP_617368.1| - 0.12 12.2 1.6 1.9 8.3 0.6 2.4 2 1 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF2070 PF09843.9 gi|20091293|ref|NP_617368.1| - 7.3 4.7 7.0 13 3.9 7.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ATP-grasp_3 PF02655.14 gi|20091294|ref|NP_617369.1| - 6.1e-17 62.1 0.0 8.3e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|20091294|ref|NP_617369.1| - 3e-06 26.9 0.0 7.9e-06 25.5 0.0 1.6 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|20091294|ref|NP_617369.1| - 3.5e-06 26.8 0.0 5.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|20091294|ref|NP_617369.1| - 1.2e-05 24.7 0.0 0.0018 17.6 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|20091294|ref|NP_617369.1| - 1.3e-05 24.9 0.0 7.1e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Epimerase PF01370.21 gi|20091294|ref|NP_617369.1| - 0.0021 17.6 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Dala_Dala_lig_C PF07478.13 gi|20091294|ref|NP_617369.1| - 0.0061 16.1 0.1 0.058 12.9 0.1 2.3 2 1 1 3 3 3 1 D-ala D-ala ligase C-terminus GDP_Man_Dehyd PF16363.5 gi|20091294|ref|NP_617369.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase PIG-L PF02585.17 gi|20091295|ref|NP_617370.1| - 1.2e-24 87.4 0.1 2.3e-24 86.5 0.1 1.5 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glycos_transf_2 PF00535.26 gi|20091296|ref|NP_617371.1| - 1e-19 71.0 0.0 1.3e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20091296|ref|NP_617371.1| - 1.3e-05 25.2 0.0 1.6e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|20091296|ref|NP_617371.1| - 4.7e-05 23.8 0.0 7.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|20091296|ref|NP_617371.1| - 0.012 15.1 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF3149 PF11346.8 gi|20091297|ref|NP_617372.1| - 0.13 11.9 0.0 6.7 6.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) tRNA-synt_1e PF01406.19 gi|20091297|ref|NP_617372.1| - 0.14 11.5 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain PEMT PF04191.13 gi|20091298|ref|NP_617373.1| - 6.1e-17 62.0 2.4 6.1e-17 62.0 2.4 2.1 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|20091298|ref|NP_617373.1| - 8.5e-08 32.5 0.4 8.5e-08 32.5 0.4 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.17 gi|20091298|ref|NP_617373.1| - 0.002 17.0 1.8 0.0029 16.4 0.1 1.9 1 1 0 2 2 2 1 Ergosterol biosynthesis ERG4/ERG24 family NnrU PF07298.11 gi|20091298|ref|NP_617373.1| - 0.0052 16.3 0.7 0.0052 16.3 0.7 2.1 1 1 0 2 2 2 1 NnrU protein LCM PF04072.14 gi|20091299|ref|NP_617374.1| - 7.5e-51 172.8 0.0 1e-50 172.3 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase CMD PF02627.20 gi|20091300|ref|NP_617375.1| - 1e-12 47.9 0.2 4.2e-12 45.9 0.3 1.8 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Terminase_5 PF06056.12 gi|20091301|ref|NP_617376.1| - 1.4e-07 31.3 0.0 2.1e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|20091301|ref|NP_617376.1| - 3.2e-06 26.8 0.0 6.7e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|20091301|ref|NP_617376.1| - 9.5e-05 22.5 0.0 0.00014 21.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20091301|ref|NP_617376.1| - 0.0048 16.6 0.0 0.015 15.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091301|ref|NP_617376.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1670 PF07900.11 gi|20091301|ref|NP_617376.1| - 0.011 15.1 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Zn_Tnp_IS1 PF03811.13 gi|20091301|ref|NP_617376.1| - 0.011 15.4 8.9 0.021 14.6 8.9 1.5 1 0 0 1 1 1 0 InsA N-terminal domain zf-Mss51 PF13824.6 gi|20091301|ref|NP_617376.1| - 0.013 15.5 2.0 0.025 14.7 2.0 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_29 PF13551.6 gi|20091301|ref|NP_617376.1| - 0.022 14.8 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|20091301|ref|NP_617376.1| - 0.029 14.7 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_50 PF18024.1 gi|20091301|ref|NP_617376.1| - 0.05 13.2 0.0 0.095 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|20091301|ref|NP_617376.1| - 0.056 13.6 2.6 0.88 9.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain TnsD PF15978.5 gi|20091301|ref|NP_617376.1| - 0.095 11.7 0.6 0.19 10.7 0.6 1.5 1 1 0 1 1 1 0 Tn7-like transposition protein D Zn_Tnp_IS1595 PF12760.7 gi|20091301|ref|NP_617376.1| - 0.15 12.0 7.2 0.24 11.4 7.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|20091301|ref|NP_617376.1| - 1.8 8.1 5.0 4 7.0 1.3 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.20 gi|20091301|ref|NP_617376.1| - 2.9 8.0 5.7 2.6 8.1 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin DDE_Tnp_IS1 PF03400.13 gi|20091302|ref|NP_617377.1| - 3.4e-14 53.3 0.3 3.9e-14 53.1 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase TERT_thumb PF17984.1 gi|20091302|ref|NP_617377.1| - 0.018 14.9 0.2 0.023 14.6 0.2 1.1 1 0 0 1 1 1 0 Telomerase reverse transcriptase thumb DNA binding domain ABC_tran PF00005.27 gi|20091303|ref|NP_617378.1| - 1.2e-32 113.3 0.0 2.5e-32 112.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|20091303|ref|NP_617378.1| - 1e-15 58.2 9.2 1.5e-15 57.6 9.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|20091303|ref|NP_617378.1| - 9.1e-06 25.3 0.0 7.1e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20091303|ref|NP_617378.1| - 0.00034 21.0 0.2 0.00059 20.3 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|20091303|ref|NP_617378.1| - 0.0015 17.9 0.0 0.003 16.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.6 gi|20091303|ref|NP_617378.1| - 0.037 13.6 0.1 0.89 9.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|20091303|ref|NP_617378.1| - 0.043 13.5 0.1 0.12 12.1 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|20091303|ref|NP_617378.1| - 0.051 13.3 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|20091303|ref|NP_617378.1| - 0.06 13.1 0.0 0.83 9.4 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|20091303|ref|NP_617378.1| - 0.094 13.0 0.2 0.56 10.5 0.2 2.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20091303|ref|NP_617378.1| - 0.11 12.4 0.2 10 6.0 0.0 2.3 2 0 0 2 2 2 0 NACHT domain PixA PF12306.8 gi|20091303|ref|NP_617378.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Inclusion body protein AAA_5 PF07728.14 gi|20091303|ref|NP_617378.1| - 0.13 12.2 0.1 1.9 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|20091303|ref|NP_617378.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|20091303|ref|NP_617378.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|20091304|ref|NP_617379.1| - 2.3e-32 112.3 0.0 3.6e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|20091304|ref|NP_617379.1| - 4e-17 62.7 4.0 5.1e-17 62.4 4.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|20091304|ref|NP_617379.1| - 3.5e-07 29.9 0.1 1.4e-05 24.7 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20091304|ref|NP_617379.1| - 0.012 16.0 0.0 0.027 14.9 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|20091304|ref|NP_617379.1| - 0.014 15.1 0.0 0.038 13.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|20091304|ref|NP_617379.1| - 0.035 13.4 0.0 0.087 12.1 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 gi|20091304|ref|NP_617379.1| - 0.1 12.5 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase oligo_HPY PF08352.12 gi|20091305|ref|NP_617380.1| - 2.1e-17 63.4 0.1 6.2e-17 61.9 0.1 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region ABC_tran PF00005.27 gi|20091305|ref|NP_617380.1| - 1.5e-13 51.5 0.0 2.1e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20091305|ref|NP_617380.1| - 0.00049 19.6 0.0 0.00065 19.2 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20091305|ref|NP_617380.1| - 0.046 13.5 0.0 0.07 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Methyltransf_11 PF08241.12 gi|20091306|ref|NP_617381.1| - 3.3e-24 85.4 0.0 5.1e-24 84.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091306|ref|NP_617381.1| - 8e-19 68.2 0.0 1.5e-18 67.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091306|ref|NP_617381.1| - 1.8e-18 66.8 0.0 2.3e-18 66.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091306|ref|NP_617381.1| - 3.3e-14 53.0 0.0 4.6e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091306|ref|NP_617381.1| - 8.8e-12 45.6 0.0 1.8e-11 44.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091306|ref|NP_617381.1| - 1.4e-10 40.9 0.0 2.2e-10 40.3 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|20091306|ref|NP_617381.1| - 0.0014 18.3 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|20091306|ref|NP_617381.1| - 0.0023 17.6 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|20091306|ref|NP_617381.1| - 0.0054 15.7 0.0 0.012 14.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) DREV PF05219.12 gi|20091306|ref|NP_617381.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase TPMT PF05724.11 gi|20091306|ref|NP_617381.1| - 0.14 11.8 0.0 0.48 10.0 0.0 2.0 2 1 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) SBP_bac_5 PF00496.22 gi|20091307|ref|NP_617382.1| - 2.1e-73 247.5 3.6 3.4e-73 246.8 3.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RRM_1 PF00076.22 gi|20091307|ref|NP_617382.1| - 0.065 13.1 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DUF3993 PF13158.6 gi|20091307|ref|NP_617382.1| - 0.2 11.9 1.7 0.51 10.6 0.0 2.6 4 0 0 4 4 4 0 Protein of unknown function (DUF3993) SBP_bac_5 PF00496.22 gi|20091308|ref|NP_617383.1| - 4.4e-75 253.0 7.9 5.8e-75 252.6 7.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.27 gi|20091309|ref|NP_617384.1| - 2e-27 96.4 0.0 2.7e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20091309|ref|NP_617384.1| - 1.1e-07 32.0 1.3 0.00072 19.5 0.0 2.8 1 1 2 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20091309|ref|NP_617384.1| - 7e-05 23.3 0.1 0.00013 22.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20091309|ref|NP_617384.1| - 0.00037 20.8 0.1 0.0015 18.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|20091309|ref|NP_617384.1| - 0.00073 20.0 0.0 0.0022 18.4 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|20091309|ref|NP_617384.1| - 0.0023 16.9 0.0 0.057 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.19 gi|20091309|ref|NP_617384.1| - 0.0024 17.4 1.6 0.029 13.8 1.6 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20091309|ref|NP_617384.1| - 0.0094 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Zeta_toxin PF06414.12 gi|20091309|ref|NP_617384.1| - 0.013 14.8 0.0 0.053 12.8 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.6 gi|20091309|ref|NP_617384.1| - 0.021 14.9 0.0 0.18 11.8 0.0 2.1 1 1 1 2 2 2 0 AAA domain oligo_HPY PF08352.12 gi|20091309|ref|NP_617384.1| - 0.034 14.7 0.0 0.14 12.7 0.0 2.0 2 0 0 2 2 2 0 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.6 gi|20091309|ref|NP_617384.1| - 0.055 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|20091309|ref|NP_617384.1| - 0.055 13.5 0.1 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|20091309|ref|NP_617384.1| - 0.17 11.1 0.2 0.32 10.1 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|20091309|ref|NP_617384.1| - 0.49 10.3 2.3 9.7 6.1 2.3 2.4 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|20091310|ref|NP_617385.1| - 6e-20 72.2 0.0 9.6e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20091310|ref|NP_617385.1| - 1.3e-12 48.0 0.1 2.8e-12 47.0 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|20091310|ref|NP_617385.1| - 0.00091 18.7 0.0 0.23 10.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20091310|ref|NP_617385.1| - 0.013 15.3 0.1 0.099 12.4 0.0 1.9 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20091310|ref|NP_617385.1| - 0.036 13.8 0.0 0.09 12.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|20091310|ref|NP_617385.1| - 0.054 13.9 0.1 0.12 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|20091310|ref|NP_617385.1| - 0.067 13.5 0.1 0.15 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|20091311|ref|NP_617386.1| - 3.9e-19 69.1 11.0 3.9e-19 69.1 11.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20091311|ref|NP_617386.1| - 5e-07 29.6 0.0 5e-07 29.6 0.0 2.7 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|20091311|ref|NP_617386.1| - 0.1 12.1 5.0 0.1 12.1 2.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) RseC_MucC PF04246.12 gi|20091311|ref|NP_617386.1| - 3.4 7.6 4.5 5 7.1 0.0 2.6 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC BPD_transp_1 PF00528.22 gi|20091312|ref|NP_617387.1| - 1.9e-31 109.2 18.5 1.9e-31 109.2 18.5 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|20091313|ref|NP_617388.1| - 7.4e-70 235.8 7.4 9.4e-70 235.5 7.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|20091315|ref|NP_617390.1| - 5.6e-35 120.7 22.4 5.6e-35 120.7 22.4 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component PIG-P PF08510.12 gi|20091315|ref|NP_617390.1| - 0.19 11.6 2.5 0.45 10.5 2.5 1.8 1 0 0 1 1 1 0 PIG-P Methyltransf_25 PF13649.6 gi|20091316|ref|NP_617391.1| - 2e-11 44.4 0.0 4.1e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091316|ref|NP_617391.1| - 5.1e-08 32.9 0.0 4.3e-07 29.8 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091316|ref|NP_617391.1| - 2.8e-06 27.9 0.0 1e-05 26.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091316|ref|NP_617391.1| - 4.8e-06 26.5 0.0 9e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20091316|ref|NP_617391.1| - 0.00023 20.8 0.0 0.00034 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|20091316|ref|NP_617391.1| - 0.0016 19.1 0.0 0.0031 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20091316|ref|NP_617391.1| - 0.0018 17.7 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|20091316|ref|NP_617391.1| - 0.0079 15.3 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|20091316|ref|NP_617391.1| - 0.018 14.4 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|20091316|ref|NP_617391.1| - 0.058 13.5 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase DUF938 PF06080.12 gi|20091316|ref|NP_617391.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MetW PF07021.12 gi|20091316|ref|NP_617391.1| - 0.14 11.8 0.0 0.19 11.3 0.0 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|20091316|ref|NP_617391.1| - 0.17 11.6 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SBP_bac_5 PF00496.22 gi|20091317|ref|NP_617392.1| - 1.7e-81 274.1 7.8 2.3e-81 273.7 7.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.27 gi|20091319|ref|NP_617394.1| - 2.2e-32 112.4 0.0 3.1e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20091319|ref|NP_617394.1| - 1.1e-09 38.1 0.2 3e-08 33.4 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20091319|ref|NP_617394.1| - 3.7e-06 27.0 0.1 0.0027 17.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20091319|ref|NP_617394.1| - 2e-05 24.2 0.1 4.1e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.7 gi|20091319|ref|NP_617394.1| - 0.00014 20.9 0.0 0.0046 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.6 gi|20091319|ref|NP_617394.1| - 0.00033 20.3 0.1 0.059 12.9 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|20091319|ref|NP_617394.1| - 0.00074 19.3 0.0 0.0031 17.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|20091319|ref|NP_617394.1| - 0.00096 19.4 0.2 0.0068 16.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|20091319|ref|NP_617394.1| - 0.0051 17.3 0.2 0.01 16.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20091319|ref|NP_617394.1| - 0.0074 16.7 0.1 0.014 15.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20091319|ref|NP_617394.1| - 0.0081 16.1 0.0 0.019 14.9 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase Mac PF12464.8 gi|20091319|ref|NP_617394.1| - 0.0081 16.4 0.3 0.087 13.1 0.0 2.2 2 0 0 2 2 2 1 Maltose acetyltransferase DUF87 PF01935.17 gi|20091319|ref|NP_617394.1| - 0.011 15.9 0.4 0.02 15.0 0.4 1.8 1 1 0 1 1 1 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|20091319|ref|NP_617394.1| - 0.016 15.0 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Ecm29 PF13001.7 gi|20091319|ref|NP_617394.1| - 0.035 12.8 0.0 0.052 12.2 0.0 1.2 1 0 0 1 1 1 0 Proteasome stabiliser AAA_24 PF13479.6 gi|20091319|ref|NP_617394.1| - 0.065 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20091319|ref|NP_617394.1| - 0.089 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20091319|ref|NP_617394.1| - 0.13 12.4 0.3 0.29 11.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|20091320|ref|NP_617395.1| - 1.8e-15 57.1 3.6 1.8e-15 57.1 3.6 2.9 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|20091320|ref|NP_617395.1| - 2.8e-15 57.2 3.1 4.2e-15 56.6 3.1 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain MacB_PCD PF12704.7 gi|20091321|ref|NP_617396.1| - 7.6e-15 55.8 0.7 7.6e-15 55.8 0.7 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20091321|ref|NP_617396.1| - 4e-09 36.8 6.4 4e-09 36.8 6.4 2.7 3 0 0 3 3 3 1 FtsX-like permease family DUF2517 PF10725.9 gi|20091321|ref|NP_617396.1| - 0.17 11.7 0.3 0.52 10.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) TcfC PF16967.5 gi|20091322|ref|NP_617397.1| - 1.9e-05 24.0 0.2 0.042 13.3 0.0 3.8 4 0 0 4 4 4 2 E-set like domain Glyco_hydro_2 PF00703.21 gi|20091322|ref|NP_617397.1| - 0.0013 19.4 0.1 1.1 10.0 0.0 2.9 2 1 0 2 2 2 2 Glycosyl hydrolases family 2 BsuPI PF12690.7 gi|20091322|ref|NP_617397.1| - 0.11 12.5 0.0 4.6 7.3 0.0 2.7 2 0 0 2 2 2 0 Intracellular proteinase inhibitor MULE PF10551.9 gi|20091323|ref|NP_617398.1| - 5.8e-07 29.9 0.0 1.4e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091323|ref|NP_617398.1| - 0.013 15.5 0.5 4.2 7.4 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091323|ref|NP_617398.1| - 0.016 15.2 0.1 0.046 13.7 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091323|ref|NP_617398.1| - 0.024 14.5 0.5 0.052 13.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091323|ref|NP_617398.1| - 0.033 14.0 1.2 0.073 12.9 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091323|ref|NP_617398.1| - 0.055 12.3 0.0 0.087 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091323|ref|NP_617398.1| - 0.064 13.1 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091323|ref|NP_617398.1| - 0.13 12.3 3.3 0.34 11.0 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091323|ref|NP_617398.1| - 0.24 12.0 5.1 0.52 10.9 3.3 2.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20091323|ref|NP_617398.1| - 0.29 11.2 2.6 68 3.6 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091323|ref|NP_617398.1| - 5.5 7.0 7.1 1.6 8.6 3.1 2.2 2 1 0 2 2 2 0 PHD-finger TetR_N PF00440.23 gi|20091324|ref|NP_617399.1| - 9.9e-14 50.9 0.0 1.6e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family LacI PF00356.21 gi|20091324|ref|NP_617399.1| - 0.024 14.4 0.1 0.058 13.2 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Phage_TAC_7 PF10109.9 gi|20091324|ref|NP_617399.1| - 0.036 14.2 0.1 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Phage tail assembly chaperone proteins, E, or 41 or 14 MULE PF10551.9 gi|20091325|ref|NP_617400.1| - 0.00038 20.8 0.0 0.0011 19.4 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20091325|ref|NP_617400.1| - 0.07 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20091325|ref|NP_617400.1| - 0.16 12.5 1.7 0.51 10.9 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20091325|ref|NP_617400.1| - 0.21 11.3 1.3 0.58 9.9 1.3 1.7 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20091325|ref|NP_617400.1| - 0.41 10.6 3.0 2 8.4 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger FMN_red PF03358.15 gi|20091326|ref|NP_617401.1| - 3.8e-27 94.9 0.0 5.2e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20091326|ref|NP_617401.1| - 8e-14 51.8 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold RecR PF02132.15 gi|20091326|ref|NP_617401.1| - 0.0073 15.8 2.0 0.018 14.6 2.0 1.6 1 0 0 1 1 1 1 RecR protein DUF169 PF02596.15 gi|20091327|ref|NP_617402.1| - 1.8e-39 135.8 0.1 2.2e-39 135.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Fumerase PF05681.14 gi|20091328|ref|NP_617403.1| - 5.4e-100 334.3 0.0 6e-100 334.1 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) DBI_PRT PF02277.17 gi|20091328|ref|NP_617403.1| - 0.059 12.6 0.1 0.098 11.9 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyltransferase Fumerase_C PF05683.12 gi|20091329|ref|NP_617404.1| - 2.1e-45 154.6 0.0 2.4e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF1860 PF08949.10 gi|20091329|ref|NP_617404.1| - 0.15 11.8 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1860) DUF1724 PF08350.10 gi|20091330|ref|NP_617405.1| - 1.6e-14 53.8 0.0 2.9e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR_2 PF12802.7 gi|20091330|ref|NP_617405.1| - 3.9e-05 23.5 0.0 0.00012 21.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|20091330|ref|NP_617405.1| - 0.008 16.0 0.0 0.022 14.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|20091330|ref|NP_617405.1| - 0.0083 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|20091330|ref|NP_617405.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|20091330|ref|NP_617405.1| - 0.018 15.1 0.0 0.053 13.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20091330|ref|NP_617405.1| - 0.026 14.1 0.1 0.053 13.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rhodanese PF00581.20 gi|20091331|ref|NP_617406.1| - 5.2e-18 65.5 0.0 7.5e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain E1-E2_ATPase PF00122.20 gi|20091332|ref|NP_617407.1| - 3.2e-50 170.2 3.3 3.2e-50 170.2 3.3 3.2 3 0 0 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|20091332|ref|NP_617407.1| - 1.7e-29 102.8 6.1 1.7e-29 102.8 6.1 2.4 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|20091332|ref|NP_617407.1| - 1e-21 78.2 2.1 2e-19 70.7 0.4 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|20091332|ref|NP_617407.1| - 1.8e-20 72.4 0.1 3.5e-20 71.5 0.1 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|20091332|ref|NP_617407.1| - 2.9e-17 62.5 0.0 6.1e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|20091332|ref|NP_617407.1| - 2e-05 24.4 1.6 0.001 18.9 1.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20091332|ref|NP_617407.1| - 0.0017 18.8 0.0 0.0049 17.3 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2970 PF11174.8 gi|20091332|ref|NP_617407.1| - 3.8 7.4 7.5 9.2 6.2 1.0 4.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2970) PPK2 PF03976.14 gi|20091333|ref|NP_617408.1| - 5.7e-68 228.8 3.4 1.1e-67 227.9 3.4 1.4 1 1 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Osmo_CC PF08946.10 gi|20091333|ref|NP_617408.1| - 0.13 12.5 2.6 1.3 9.3 0.4 2.8 2 0 0 2 2 2 0 Osmosensory transporter coiled coil HSBP1 PF06825.12 gi|20091333|ref|NP_617408.1| - 0.52 10.2 4.4 0.42 10.5 1.0 2.3 2 0 0 2 2 2 0 Heat shock factor binding protein 1 MFS_1 PF07690.16 gi|20091334|ref|NP_617409.1| - 1.2e-35 123.1 63.2 2.3e-35 122.2 59.9 2.9 2 1 0 2 2 2 1 Major Facilitator Superfamily PetG PF02529.15 gi|20091334|ref|NP_617409.1| - 0.013 15.4 0.7 0.013 15.4 0.7 4.3 4 0 0 4 4 4 0 Cytochrome B6-F complex subunit 5 EamA PF00892.20 gi|20091335|ref|NP_617410.1| - 0.032 14.4 19.5 0.054 13.7 19.5 1.3 1 1 0 1 1 1 0 EamA-like transporter family DUF962 PF06127.11 gi|20091336|ref|NP_617411.1| - 0.41 10.7 3.6 0.37 10.9 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF962) DUF308 PF03729.13 gi|20091337|ref|NP_617412.1| - 1.8e-18 66.6 58.9 1.2e-09 38.3 23.5 3.1 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) NosD PF05048.13 gi|20091338|ref|NP_617413.1| - 3.3e-89 298.3 102.7 2.4e-36 125.2 36.9 4.5 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Lectin_like PF18560.1 gi|20091338|ref|NP_617413.1| - 5.8e-58 195.5 0.4 2.5e-57 193.5 0.1 2.4 2 0 0 2 2 2 1 Lectin like domain Beta_helix PF13229.6 gi|20091338|ref|NP_617413.1| - 1.5e-52 177.6 96.6 1.5e-18 67.1 21.2 5.3 2 1 2 4 4 4 4 Right handed beta helix region Peptidase_C1 PF00112.23 gi|20091338|ref|NP_617413.1| - 8.8e-22 78.3 0.0 1.8e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 Papain family cysteine protease PKD PF00801.20 gi|20091338|ref|NP_617413.1| - 4.9e-11 42.3 1.0 1.9e-10 40.4 1.0 2.1 1 0 0 1 1 1 1 PKD domain Pectate_lyase_3 PF12708.7 gi|20091338|ref|NP_617413.1| - 0.012 15.5 0.7 0.012 15.5 0.7 5.0 1 1 3 5 5 5 0 Pectate lyase superfamily protein Peptidase_C1_2 PF03051.15 gi|20091338|ref|NP_617413.1| - 0.017 14.0 0.1 1.1 8.0 0.2 2.2 2 0 0 2 2 2 0 Peptidase C1-like family Ribo_biogen_C PF04034.13 gi|20091339|ref|NP_617414.1| - 4.5e-47 158.9 0.0 5.4e-47 158.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|20091339|ref|NP_617414.1| - 7.2e-15 54.5 0.3 7.2e-15 54.5 0.3 1.8 2 0 0 2 2 2 1 Possible Fer4-like domain in RNase L inhibitor, RLI RNA_Me_trans PF04252.13 gi|20091339|ref|NP_617414.1| - 0.023 14.3 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase DTW PF03942.15 gi|20091339|ref|NP_617414.1| - 0.099 12.3 0.0 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 DTW domain ANF_receptor PF01094.28 gi|20091339|ref|NP_617414.1| - 0.2 10.7 0.0 0.2 10.7 0.0 1.1 1 0 0 1 1 1 0 Receptor family ligand binding region LDcluster4 PF18306.1 gi|20091340|ref|NP_617415.1| - 9.2e-44 148.8 2.0 1.1e-43 148.6 2.0 1.0 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|20091340|ref|NP_617415.1| - 2.3e-07 30.3 0.6 0.00013 21.3 0.5 2.1 2 0 0 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.14 gi|20091340|ref|NP_617415.1| - 4.1e-06 26.9 1.1 8.3e-06 25.9 0.1 1.9 2 0 0 2 2 2 1 Possible lysine decarboxylase Topoisom_bac PF01131.20 gi|20091341|ref|NP_617416.1| - 1.8e-121 406.0 0.0 2.6e-121 405.5 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|20091341|ref|NP_617416.1| - 6.8e-15 55.2 0.2 2.7e-14 53.2 0.2 2.1 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|20091341|ref|NP_617416.1| - 2.3e-13 49.7 1.7 2.3e-13 49.7 1.7 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|20091341|ref|NP_617416.1| - 4.3e-07 30.4 0.4 2.4e-06 28.0 0.6 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|20091341|ref|NP_617416.1| - 0.00021 21.4 0.0 0.00048 20.3 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|20091341|ref|NP_617416.1| - 0.00023 21.4 0.0 0.00053 20.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|20091341|ref|NP_617416.1| - 0.0042 16.9 0.0 0.011 15.5 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cas_TM1802 PF09484.10 gi|20091341|ref|NP_617416.1| - 0.063 12.0 0.1 0.12 11.1 0.1 1.4 1 0 0 1 1 1 0 CRISPR-associated protein TM1802 (cas_TM1802) DUF2283 PF10049.9 gi|20091341|ref|NP_617416.1| - 0.07 13.4 0.3 0.28 11.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) DUF2704 PF10866.8 gi|20091341|ref|NP_617416.1| - 0.073 13.0 0.1 6.1 6.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2704) TfoX_C PF04994.13 gi|20091341|ref|NP_617416.1| - 0.13 12.4 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 TfoX C-terminal domain Usp PF00582.26 gi|20091342|ref|NP_617417.1| - 8.7e-34 117.1 0.1 9.8e-34 116.9 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Clr5 PF14420.6 gi|20091342|ref|NP_617417.1| - 0.15 12.3 0.3 0.43 10.8 0.1 1.8 2 0 0 2 2 2 0 Clr5 domain Beta-Casp PF10996.8 gi|20091343|ref|NP_617418.1| - 2.2e-14 53.7 0.0 5.3e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|20091343|ref|NP_617418.1| - 7.5e-13 48.2 0.0 1.5e-11 44.0 0.0 2.4 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|20091343|ref|NP_617418.1| - 8.7e-06 25.9 0.0 0.0002 21.4 0.0 2.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|20091343|ref|NP_617418.1| - 1.1e-05 25.0 0.0 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|20091343|ref|NP_617418.1| - 2.5e-05 23.9 0.0 6.2e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20091343|ref|NP_617418.1| - 0.0019 18.1 0.0 0.0065 16.4 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF2148 PF09918.9 gi|20091344|ref|NP_617419.1| - 1.2e-31 108.5 1.0 2.4e-31 107.6 1.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|20091344|ref|NP_617419.1| - 0.00062 19.4 3.6 0.00086 18.9 2.3 2.0 2 0 0 2 2 2 1 Putative Fe-S cluster zf-RING_4 PF14570.6 gi|20091344|ref|NP_617419.1| - 0.031 14.1 0.1 0.063 13.1 0.1 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Nitroreductase PF00881.24 gi|20091344|ref|NP_617419.1| - 0.048 13.7 0.1 0.066 13.3 0.1 1.3 1 1 0 1 1 1 0 Nitroreductase family DUF460 PF04312.13 gi|20091345|ref|NP_617420.1| - 4.7e-46 156.0 0.0 1.3e-45 154.5 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) DUF2703 PF10865.8 gi|20091345|ref|NP_617420.1| - 0.0058 16.8 0.4 0.012 15.8 0.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) CREPT PF16566.5 gi|20091345|ref|NP_617420.1| - 0.0088 16.2 8.0 4.8 7.3 6.8 2.7 2 0 0 2 2 2 2 Cell-cycle alteration and expression-elevated protein in tumour acVLRF1 PF18859.1 gi|20091345|ref|NP_617420.1| - 0.0093 16.3 0.3 0.0093 16.3 0.3 2.6 3 0 0 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor Nif11 PF07862.11 gi|20091345|ref|NP_617420.1| - 0.032 14.5 0.0 1.2 9.5 0.0 3.3 3 0 0 3 3 3 0 Nif11 domain FAM76 PF16046.5 gi|20091345|ref|NP_617420.1| - 0.042 13.2 7.5 0.084 12.2 7.5 1.5 1 0 0 1 1 1 0 FAM76 protein SlyX PF04102.12 gi|20091345|ref|NP_617420.1| - 0.061 13.9 5.7 2.7 8.7 1.7 2.8 1 1 1 2 2 2 0 SlyX DUF16 PF01519.16 gi|20091345|ref|NP_617420.1| - 0.15 12.6 10.2 0.056 13.9 2.2 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|20091345|ref|NP_617420.1| - 0.42 11.1 2.0 17 6.0 2.0 2.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein L31 PF09784.9 gi|20091345|ref|NP_617420.1| - 0.64 10.5 6.7 8.7 6.8 1.1 3.0 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L31 Fib_alpha PF08702.10 gi|20091345|ref|NP_617420.1| - 0.77 9.9 10.3 0.33 11.1 1.7 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family USP8_interact PF08941.10 gi|20091345|ref|NP_617420.1| - 1.6 8.5 6.0 8.2 6.2 6.0 2.0 1 1 0 1 1 1 0 USP8 interacting TMPIT PF07851.13 gi|20091345|ref|NP_617420.1| - 5 6.3 5.8 8.9 5.5 5.8 1.4 1 0 0 1 1 1 0 TMPIT-like protein FlaC_arch PF05377.11 gi|20091345|ref|NP_617420.1| - 6.3 7.3 7.9 20 5.7 1.0 3.3 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) RIO1 PF01163.22 gi|20091346|ref|NP_617421.1| - 3e-43 147.6 0.1 4.3e-43 147.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|20091346|ref|NP_617421.1| - 6.7e-30 103.1 0.2 1.9e-29 101.7 0.0 1.8 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|20091346|ref|NP_617421.1| - 0.00067 19.6 0.3 0.0074 16.2 0.1 1.8 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|20091346|ref|NP_617421.1| - 0.0018 17.7 0.2 0.0042 16.5 0.2 1.7 1 1 0 1 1 1 1 Protein kinase domain LRR_4 PF12799.7 gi|20091347|ref|NP_617422.1| - 0.00086 19.7 17.4 1.5 9.4 0.1 5.0 4 1 1 5 5 5 3 Leucine Rich repeats (2 copies) LRR_5 PF13306.6 gi|20091347|ref|NP_617422.1| - 0.0014 18.6 0.2 0.0032 17.4 0.2 1.5 1 0 0 1 1 1 1 BspA type Leucine rich repeat region (6 copies) Sigma_reg_N PF13800.6 gi|20091347|ref|NP_617422.1| - 0.042 14.1 0.1 0.084 13.2 0.1 1.4 1 0 0 1 1 1 0 Sigma factor regulator N-terminal LRR_1 PF00560.33 gi|20091347|ref|NP_617422.1| - 4 8.3 7.9 1.3e+02 3.8 0.3 5.2 3 1 0 3 3 3 0 Leucine Rich Repeat Pribosyltran PF00156.27 gi|20091348|ref|NP_617423.1| - 2.7e-17 62.7 0.6 4.6e-17 62.0 0.6 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|20091348|ref|NP_617423.1| - 1.2e-05 24.8 0.9 1.6e-05 24.5 0.2 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|20091348|ref|NP_617423.1| - 2.2e-05 24.0 1.1 0.00025 20.6 1.1 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.15 gi|20091348|ref|NP_617423.1| - 0.00075 19.5 0.0 0.0021 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.19 gi|20091348|ref|NP_617423.1| - 0.0019 17.7 0.0 0.0044 16.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family OmpA_membrane PF01389.17 gi|20091348|ref|NP_617423.1| - 0.016 15.0 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 OmpA-like transmembrane domain HTH_23 PF13384.6 gi|20091348|ref|NP_617423.1| - 0.017 14.9 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|20091348|ref|NP_617423.1| - 0.031 14.2 0.2 0.092 12.7 0.2 1.9 1 1 0 1 1 1 0 HTH domain PAX PF00292.18 gi|20091348|ref|NP_617423.1| - 0.031 14.2 0.1 5.1 7.0 0.0 2.4 2 1 0 2 2 2 0 'Paired box' domain Sigma70_r4 PF04545.16 gi|20091348|ref|NP_617423.1| - 0.077 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|20091348|ref|NP_617423.1| - 0.077 13.0 0.1 0.28 11.2 0.1 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091348|ref|NP_617423.1| - 0.088 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.12 gi|20091348|ref|NP_617423.1| - 0.092 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.6 gi|20091348|ref|NP_617423.1| - 0.12 12.0 0.1 0.27 10.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PRTase_3 PF15610.6 gi|20091348|ref|NP_617423.1| - 0.12 11.6 0.1 0.22 10.8 0.1 1.4 1 0 0 1 1 1 0 PRTase ComF-like YdjM PF04307.14 gi|20091349|ref|NP_617424.1| - 2.6e-16 59.4 4.4 3.2e-16 59.1 4.4 1.0 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|20091349|ref|NP_617424.1| - 0.019 15.0 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C Orf78 PF06024.12 gi|20091350|ref|NP_617425.1| - 0.52 10.6 5.8 0.23 11.8 2.7 2.0 1 1 1 2 2 2 0 Orf78 (ac78) SIR2_2 PF13289.6 gi|20091351|ref|NP_617426.1| - 2.6e-20 73.0 0.0 4.5e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 SIR2-like domain CHAT PF12770.7 gi|20091351|ref|NP_617426.1| - 1.4e-07 31.3 0.0 5.1e-07 29.4 0.0 1.8 1 1 0 1 1 1 1 CHAT domain SIR2_2 PF13289.6 gi|20091352|ref|NP_617427.1| - 0.023 14.8 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 SIR2-like domain WD40 PF00400.32 gi|20091353|ref|NP_617428.1| - 2.3e-104 338.4 42.1 1.1e-05 26.1 0.1 16.5 16 0 0 16 16 16 16 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|20091353|ref|NP_617428.1| - 7.5e-53 176.8 1.6 0.0013 19.0 0.0 15.3 1 1 15 16 16 16 13 Anaphase-promoting complex subunit 4 WD40 domain eIF2A PF08662.11 gi|20091353|ref|NP_617428.1| - 3.6e-44 151.0 22.4 2.6e-09 37.2 1.1 8.6 1 1 7 8 8 8 8 Eukaryotic translation initiation factor eIF2A PD40 PF07676.12 gi|20091353|ref|NP_617428.1| - 3.5e-34 116.0 13.1 0.11 12.5 0.0 15.7 15 1 1 16 16 16 9 WD40-like Beta Propeller Repeat Ge1_WD40 PF16529.5 gi|20091353|ref|NP_617428.1| - 3.8e-33 114.8 14.9 0.025 13.6 0.1 15.4 1 1 15 16 16 16 10 WD40 region of Ge1, enhancer of mRNA-decapping protein Nup160 PF11715.8 gi|20091353|ref|NP_617428.1| - 1.4e-19 70.2 28.7 0.36 9.4 0.1 13.7 4 4 9 14 14 14 8 Nucleoporin Nup120/160 Coatomer_WDAD PF04053.14 gi|20091353|ref|NP_617428.1| - 7.9e-19 68.0 11.3 0.0012 18.0 0.3 7.6 1 1 6 7 7 7 5 Coatomer WD associated region Proteasome_A_N PF10584.9 gi|20091353|ref|NP_617428.1| - 9.4e-19 66.8 11.4 24 4.7 0.0 14.9 16 0 0 16 16 16 0 Proteasome subunit A N-terminal signature NTNH_C PF08470.10 gi|20091353|ref|NP_617428.1| - 3.3e-16 59.6 0.0 0.26 11.1 0.0 7.6 1 1 5 8 8 8 4 Nontoxic nonhaemagglutinin C-terminal PQQ_2 PF13360.6 gi|20091353|ref|NP_617428.1| - 5.7e-16 58.8 28.9 1.1e-05 25.2 6.8 5.9 1 1 5 6 6 6 5 PQQ-like domain DUF5570 PF17731.1 gi|20091353|ref|NP_617428.1| - 5.1e-15 55.7 28.5 0.44 10.6 0.0 13.7 2 1 13 15 15 14 2 Family of unknown function (DUF5570) Cytochrom_D1 PF02239.16 gi|20091353|ref|NP_617428.1| - 6e-13 48.1 9.1 0.76 8.2 0.0 8.0 1 1 9 10 10 10 7 Cytochrome D1 heme domain HPS3_N PF14761.6 gi|20091353|ref|NP_617428.1| - 1.6e-10 40.9 0.0 11 5.5 0.0 8.6 1 1 10 11 11 11 0 Hermansky-Pudlak syndrome 3 Phage_base_V PF04717.12 gi|20091353|ref|NP_617428.1| - 2.8e-06 27.2 3.2 0.55 10.2 0.0 7.0 4 3 3 7 7 7 1 Type VI secretion system, phage-baseplate injector WD40_like PF17005.5 gi|20091353|ref|NP_617428.1| - 0.00011 21.6 4.4 47 3.2 0.0 8.5 5 4 8 13 13 13 0 WD40-like domain DUF3332 PF11810.8 gi|20091353|ref|NP_617428.1| - 0.00029 20.6 0.3 6.3 6.4 0.0 5.1 2 2 1 4 4 4 1 Domain of unknown function (DUF3332) AAA_16 PF13191.6 gi|20091353|ref|NP_617428.1| - 0.00084 19.8 0.1 0.00084 19.8 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain NAGPA PF09992.9 gi|20091353|ref|NP_617428.1| - 0.0027 17.9 14.6 6.4 6.9 0.1 7.1 2 2 7 10 10 10 1 Phosphodiester glycosidase LPD11 PF18824.1 gi|20091353|ref|NP_617428.1| - 0.012 15.7 2.4 58 3.9 0.0 7.3 12 0 0 12 12 8 0 Large polyvalent protein-associated domain 11 AAA_23 PF13476.6 gi|20091353|ref|NP_617428.1| - 0.024 15.1 6.5 0.9 10.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain Toprim_3 PF13362.6 gi|20091353|ref|NP_617428.1| - 0.028 14.8 4.0 8.1 6.9 0.0 5.6 3 2 4 7 7 6 0 Toprim domain RsgA_GTPase PF03193.16 gi|20091353|ref|NP_617428.1| - 0.053 13.4 0.0 0.19 11.6 0.0 2.0 2 0 0 2 2 1 0 RsgA GTPase Ser_hydrolase PF06821.13 gi|20091353|ref|NP_617428.1| - 0.094 12.6 4.9 62 3.4 0.1 5.8 3 2 2 6 6 6 0 Serine hydrolase Copper-bind PF00127.20 gi|20091353|ref|NP_617428.1| - 2.9 8.4 6.7 1e+02 3.4 0.0 6.1 4 3 4 8 8 7 0 Copper binding proteins, plastocyanin/azurin family Crystall PF00030.19 gi|20091354|ref|NP_617429.1| - 3.2e-20 72.1 0.1 4.2e-20 71.7 0.1 1.2 1 0 0 1 1 1 1 Beta/Gamma crystallin Inhibitor_I36 PF03995.13 gi|20091354|ref|NP_617429.1| - 1.7e-07 31.1 0.6 2.2e-07 30.7 0.6 1.2 1 0 0 1 1 1 1 Peptidase inhibitor family I36 Crystall_3 PF08964.10 gi|20091354|ref|NP_617429.1| - 0.009 16.2 0.2 0.018 15.2 0.2 1.5 1 1 0 1 1 1 1 Beta/Gamma crystallin IL4_i_Ig PF18258.1 gi|20091354|ref|NP_617429.1| - 0.03 14.5 0.3 0.21 11.8 0.2 2.0 1 1 1 2 2 2 0 Interleukin-4 inducing immunoglobulin-binding domain DUF973 PF06157.11 gi|20091355|ref|NP_617430.1| - 0.15 11.1 0.0 0.15 11.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Herpes_LMP2 PF07415.11 gi|20091355|ref|NP_617430.1| - 0.25 10.1 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein CotH PF08757.11 gi|20091356|ref|NP_617431.1| - 8.6e-35 120.8 2.1 1.2e-34 120.3 2.1 1.1 1 0 0 1 1 1 1 CotH kinase protein Peptidase_M4_C PF02868.15 gi|20091357|ref|NP_617432.1| - 5.6e-49 166.2 0.1 8.3e-49 165.7 0.1 1.3 1 0 0 1 1 1 1 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4 PF01447.18 gi|20091357|ref|NP_617432.1| - 2e-24 86.7 0.2 3.6e-24 85.9 0.2 1.4 1 0 0 1 1 1 1 Thermolysin metallopeptidase, catalytic domain PLN_propep PF16485.5 gi|20091357|ref|NP_617432.1| - 0.016 14.9 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 Protealysin propeptide DUF1133 PF06576.11 gi|20091357|ref|NP_617432.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1133) DJ-1_PfpI PF01965.24 gi|20091359|ref|NP_617434.1| - 7.6e-59 198.2 0.0 8.5e-59 198.1 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|20091359|ref|NP_617434.1| - 5.5e-05 23.0 0.0 6.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|20091359|ref|NP_617434.1| - 0.0053 16.5 0.0 0.17 11.5 0.0 2.1 1 1 1 2 2 2 1 ThiJ/PfpI family-like Catalase_C PF18011.1 gi|20091359|ref|NP_617434.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|20091359|ref|NP_617434.1| - 0.014 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|20091359|ref|NP_617434.1| - 0.057 13.2 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.6 gi|20091359|ref|NP_617434.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Cys_Met_Meta_PP PF01053.20 gi|20091360|ref|NP_617435.1| - 4.8e-151 502.6 0.0 5.5e-151 502.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 gi|20091360|ref|NP_617435.1| - 7e-10 38.0 0.1 2.9e-09 35.9 0.1 1.8 1 1 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.21 gi|20091360|ref|NP_617435.1| - 1.9e-08 33.9 0.0 2.6e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|20091360|ref|NP_617435.1| - 2.8e-06 26.5 0.0 3.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|20091360|ref|NP_617435.1| - 0.07 12.4 0.1 0.21 10.9 0.1 1.6 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family NAPRTase PF04095.16 gi|20091361|ref|NP_617436.1| - 1.4e-61 208.2 0.0 1.9e-61 207.7 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 gi|20091361|ref|NP_617436.1| - 1.8e-34 118.8 0.2 2.7e-34 118.3 0.2 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DUF2161 PF09929.9 gi|20091361|ref|NP_617436.1| - 0.018 15.2 0.0 0.17 12.0 0.0 2.2 2 0 0 2 2 2 0 Putative PD-(D/E)XK phosphodiesterase (DUF2161) PD40 PF07676.12 gi|20091363|ref|NP_617438.1| - 2.4e-23 81.5 9.2 4.7e-11 42.3 0.2 4.8 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|20091363|ref|NP_617438.1| - 5.5e-05 22.1 2.3 0.013 14.3 0.8 3.7 1 1 1 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 gi|20091363|ref|NP_617438.1| - 0.08 11.6 0.0 5.6 5.5 0.0 3.2 1 1 2 4 4 4 0 Oligogalacturonate lyase Hexapep PF00132.24 gi|20091364|ref|NP_617439.1| - 3.2e-11 42.5 0.7 0.0094 15.6 0.0 4.5 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20091364|ref|NP_617439.1| - 1.5e-06 27.8 4.1 0.0017 18.1 0.8 4.3 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase Methyltransf_31 PF13847.6 gi|20091365|ref|NP_617440.1| - 5e-21 75.1 0.1 6e-21 74.8 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091365|ref|NP_617440.1| - 2.6e-20 72.9 0.0 4e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091365|ref|NP_617440.1| - 5.8e-20 71.8 0.0 8e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091365|ref|NP_617440.1| - 1.5e-12 47.4 0.0 1.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20091365|ref|NP_617440.1| - 1.9e-12 47.8 0.1 2.6e-12 47.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091365|ref|NP_617440.1| - 3.9e-12 46.3 0.0 4.9e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20091365|ref|NP_617440.1| - 9.6e-10 38.2 0.1 1.5e-09 37.5 0.1 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|20091365|ref|NP_617440.1| - 1e-09 38.1 0.0 1.7e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|20091365|ref|NP_617440.1| - 7.1e-07 29.3 0.0 1.3e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20091365|ref|NP_617440.1| - 2.5e-06 27.1 0.0 3.3e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|20091365|ref|NP_617440.1| - 2.7e-05 23.8 0.0 4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|20091365|ref|NP_617440.1| - 3e-05 24.0 0.0 0.00055 19.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|20091365|ref|NP_617440.1| - 4.4e-05 22.9 0.0 5.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|20091365|ref|NP_617440.1| - 0.00037 20.5 0.0 0.00089 19.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_20 PF12147.8 gi|20091365|ref|NP_617440.1| - 0.00084 18.6 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.18 gi|20091365|ref|NP_617440.1| - 0.0017 18.1 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CheR PF01739.18 gi|20091365|ref|NP_617440.1| - 0.0017 17.9 0.1 0.028 13.9 0.0 2.1 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_15 PF09445.10 gi|20091365|ref|NP_617440.1| - 0.0021 17.6 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase NodS PF05401.11 gi|20091365|ref|NP_617440.1| - 0.0031 17.2 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DREV PF05219.12 gi|20091365|ref|NP_617440.1| - 0.0034 16.5 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.17 gi|20091365|ref|NP_617440.1| - 0.017 14.6 0.0 0.056 12.9 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase N2227 PF07942.12 gi|20091365|ref|NP_617440.1| - 0.04 13.1 0.0 0.07 12.3 0.0 1.4 1 0 0 1 1 1 0 N2227-like protein Methyltransf_9 PF08003.11 gi|20091365|ref|NP_617440.1| - 0.05 12.5 0.1 0.094 11.6 0.1 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) DOT1 PF08123.13 gi|20091365|ref|NP_617440.1| - 0.073 12.6 0.3 0.18 11.3 0.0 1.8 3 0 0 3 3 3 0 Histone methylation protein DOT1 TPMT PF05724.11 gi|20091365|ref|NP_617440.1| - 0.098 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_29 PF03141.16 gi|20091365|ref|NP_617440.1| - 0.12 10.9 0.1 1.2 7.6 0.0 1.9 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MULE PF10551.9 gi|20091366|ref|NP_617441.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091366|ref|NP_617441.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091366|ref|NP_617441.1| - 0.022 14.8 0.1 0.063 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091366|ref|NP_617441.1| - 0.028 14.3 0.6 0.059 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091366|ref|NP_617441.1| - 0.04 13.8 1.1 0.093 12.6 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20091366|ref|NP_617441.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20091366|ref|NP_617441.1| - 0.064 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091366|ref|NP_617441.1| - 0.07 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091366|ref|NP_617441.1| - 0.17 12.0 3.4 0.39 10.8 3.4 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091366|ref|NP_617441.1| - 0.25 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20091366|ref|NP_617441.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger HEAT_2 PF13646.6 gi|20091367|ref|NP_617442.1| - 3.9e-129 421.4 63.1 1.9e-17 63.4 2.3 6.7 1 1 10 11 11 11 11 HEAT repeats HEAT_PBS PF03130.16 gi|20091367|ref|NP_617442.1| - 6.8e-48 156.5 27.0 6.9e-05 23.2 0.1 13.9 14 0 0 14 14 14 11 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20091367|ref|NP_617442.1| - 4.2e-42 138.5 6.6 0.00097 19.2 0.0 12.7 13 0 0 13 13 13 8 HEAT repeat HEAT_EZ PF13513.6 gi|20091367|ref|NP_617442.1| - 3.2e-33 113.7 23.1 8.5e-05 23.0 0.1 12.4 11 2 2 13 13 13 7 HEAT-like repeat Arm PF00514.23 gi|20091367|ref|NP_617442.1| - 1.4e-15 56.7 6.7 0.55 10.4 0.1 9.9 9 1 1 10 10 10 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|20091367|ref|NP_617442.1| - 2.2e-14 53.8 3.0 0.0031 17.6 0.2 7.7 1 1 5 7 7 7 4 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|20091367|ref|NP_617442.1| - 2.2e-10 39.7 0.4 0.086 11.4 0.0 5.1 2 2 1 4 4 4 3 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|20091367|ref|NP_617442.1| - 1.2e-06 28.9 1.0 38 4.7 0.0 7.0 4 2 4 8 8 8 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain CLASP_N PF12348.8 gi|20091367|ref|NP_617442.1| - 3.5e-05 23.5 1.2 8.4 5.9 0.0 5.3 4 3 1 5 5 5 0 CLASP N terminal Vac14_Fab1_bd PF12755.7 gi|20091367|ref|NP_617442.1| - 0.00012 22.5 0.0 1.6e+02 3.0 0.0 6.6 2 1 6 8 8 7 0 Vacuolar 14 Fab1-binding region Vitellogenin_N PF01347.22 gi|20091367|ref|NP_617442.1| - 0.00036 19.1 0.4 3.2 6.0 0.0 4.4 2 1 2 5 5 5 1 Lipoprotein amino terminal region Clathrin PF00637.20 gi|20091367|ref|NP_617442.1| - 0.00036 20.4 0.0 1 9.2 0.0 4.0 3 1 1 4 4 4 1 Region in Clathrin and VPS RTP1_C1 PF10363.9 gi|20091367|ref|NP_617442.1| - 0.00044 20.4 0.1 0.83 9.9 0.0 4.8 4 3 0 4 4 4 1 Required for nuclear transport of RNA pol II C-terminus 1 Aconitase_B_N PF11791.8 gi|20091367|ref|NP_617442.1| - 0.00049 20.2 8.9 0.54 10.3 0.1 5.7 2 2 6 8 8 8 1 Aconitate B N-terminal domain RICTOR_V PF14668.6 gi|20091367|ref|NP_617442.1| - 0.00074 19.7 0.0 8.3 6.7 0.0 4.0 3 1 0 3 3 3 0 Rapamycin-insensitive companion of mTOR, domain 5 IFRD PF05004.13 gi|20091367|ref|NP_617442.1| - 0.0017 17.5 2.6 2 7.5 0.1 3.8 4 1 1 5 5 5 2 Interferon-related developmental regulator (IFRD) VWA_CoxE PF05762.14 gi|20091367|ref|NP_617442.1| - 0.0028 17.1 0.5 0.0063 15.9 0.5 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein BAR_2 PF10455.9 gi|20091367|ref|NP_617442.1| - 0.011 14.9 0.0 3 6.9 0.0 3.7 3 2 1 4 4 4 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Cohesin_HEAT PF12765.7 gi|20091367|ref|NP_617442.1| - 0.021 15.1 10.2 30 5.0 0.0 6.3 8 0 0 8 8 5 0 HEAT repeat associated with sister chromatid cohesion Urease_alpha PF00449.20 gi|20091367|ref|NP_617442.1| - 0.03 14.7 1.2 17 5.7 0.0 4.3 3 1 2 5 5 5 0 Urease alpha-subunit, N-terminal domain RICTOR_M PF14666.6 gi|20091367|ref|NP_617442.1| - 0.06 13.1 0.1 1e+02 2.8 0.0 4.7 6 0 0 6 6 5 0 Rapamycin-insensitive companion of mTOR, middle domain Nop52 PF05997.12 gi|20091367|ref|NP_617442.1| - 0.16 11.8 2.8 44 3.8 0.1 4.4 4 1 0 4 4 4 0 Nucleolar protein,Nop52 TetR_C_11 PF16859.5 gi|20091367|ref|NP_617442.1| - 0.17 12.2 3.0 0.28 11.5 0.2 2.7 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Drf_GBD PF06371.13 gi|20091367|ref|NP_617442.1| - 0.18 11.4 0.0 2.8 7.5 0.0 2.8 3 0 0 3 3 3 0 Diaphanous GTPase-binding Domain Tti2 PF10521.9 gi|20091367|ref|NP_617442.1| - 0.22 11.0 1.5 25 4.3 0.0 4.1 4 1 0 4 4 4 0 Tti2 family Tail_P2_I PF09684.10 gi|20091367|ref|NP_617442.1| - 0.35 10.8 2.8 4.6 7.2 0.1 3.7 4 2 0 4 4 4 0 Phage tail protein (Tail_P2_I) MgsA_C PF12002.8 gi|20091367|ref|NP_617442.1| - 0.36 10.8 1.9 3.4 7.6 0.1 3.4 4 0 0 4 4 4 0 MgsA AAA+ ATPase C terminal CHAD PF05235.14 gi|20091367|ref|NP_617442.1| - 0.58 10.1 6.0 3.1 7.7 0.9 2.5 1 1 0 2 2 2 0 CHAD domain HTH_8 PF02954.19 gi|20091367|ref|NP_617442.1| - 4 7.3 8.9 2.5 7.9 0.1 4.4 5 0 0 5 5 4 0 Bacterial regulatory protein, Fis family ALF PF03752.13 gi|20091367|ref|NP_617442.1| - 5.7 7.0 27.7 2.8 8.0 0.2 7.2 9 0 0 9 9 8 0 Short repeats of unknown function Beta_helix PF13229.6 gi|20091368|ref|NP_617443.1| - 9.3e-06 25.6 8.1 9.3e-06 25.6 8.1 2.9 3 0 0 3 3 3 1 Right handed beta helix region DUF4140 PF13600.6 gi|20091368|ref|NP_617443.1| - 0.32 11.5 1.2 2.4 8.7 0.1 2.6 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Apolipoprotein PF01442.18 gi|20091369|ref|NP_617444.1| - 0.00012 22.0 2.1 0.00019 21.4 2.1 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF3482 PF11981.8 gi|20091369|ref|NP_617444.1| - 0.011 15.1 1.1 0.02 14.3 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Snapin_Pallidin PF14712.6 gi|20091369|ref|NP_617444.1| - 0.1 13.0 1.2 0.2 12.1 0.8 1.7 1 1 1 2 2 2 0 Snapin/Pallidin DUF4071 PF13281.6 gi|20091369|ref|NP_617444.1| - 0.18 10.8 0.2 0.22 10.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) Mating_N PF12731.7 gi|20091369|ref|NP_617444.1| - 0.25 11.4 5.3 0.075 13.1 1.5 2.1 2 1 1 3 3 3 0 Mating-type protein beta 1 COG5 PF10392.9 gi|20091369|ref|NP_617444.1| - 0.36 11.0 2.7 2.6 8.2 2.8 1.9 1 1 1 2 2 2 0 Golgi transport complex subunit 5 MIF4G_like_2 PF09090.11 gi|20091369|ref|NP_617444.1| - 1.3 8.4 4.8 1.7 8.0 1.1 2.0 2 0 0 2 2 2 0 MIF4G like Secretin_N_2 PF07655.13 gi|20091369|ref|NP_617444.1| - 1.8 9.2 6.9 0.5 11.0 3.0 2.1 1 1 1 2 2 2 0 Secretin N-terminal domain DUF4611 PF15387.6 gi|20091369|ref|NP_617444.1| - 1.8 8.8 8.9 7.1 6.9 1.2 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4611) DUF573 PF04504.14 gi|20091370|ref|NP_617445.1| - 0.0013 19.3 0.5 3.1 8.5 0.0 3.1 2 1 1 3 3 3 1 Protein of unknown function, DUF573 DUF4407 PF14362.6 gi|20091370|ref|NP_617445.1| - 0.002 17.6 6.4 0.003 17.0 6.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) MMR_HSR1_Xtn PF16897.5 gi|20091370|ref|NP_617445.1| - 0.011 15.7 0.4 0.06 13.4 0.2 2.2 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain DUF1664 PF07889.12 gi|20091370|ref|NP_617445.1| - 0.058 13.4 9.9 1.1 9.3 3.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) AMMECR1 PF01871.17 gi|20091370|ref|NP_617445.1| - 0.14 11.8 0.7 0.56 9.8 0.2 2.0 1 1 1 2 2 2 0 AMMECR1 DUF1690 PF07956.11 gi|20091370|ref|NP_617445.1| - 0.15 12.5 14.8 0.16 12.4 9.9 2.2 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) Syntaxin_2 PF14523.6 gi|20091370|ref|NP_617445.1| - 0.25 11.7 8.1 4.2 7.8 0.4 3.0 3 0 0 3 3 3 0 Syntaxin-like protein Cytochrom_B562 PF07361.11 gi|20091370|ref|NP_617445.1| - 0.42 11.3 8.1 0.93 10.2 4.3 2.7 2 1 0 2 2 2 0 Cytochrome b562 Cas_Cas1 PF01867.16 gi|20091370|ref|NP_617445.1| - 0.62 9.1 10.4 0.84 8.7 0.5 2.6 3 0 0 3 3 3 0 CRISPR associated protein Cas1 GnsAB_toxin PF08178.11 gi|20091370|ref|NP_617445.1| - 0.89 9.5 4.3 3.3 7.7 0.3 2.6 2 0 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system HHA PF05321.11 gi|20091370|ref|NP_617445.1| - 1.1 9.6 4.9 0.81 10.0 0.7 2.6 2 0 0 2 2 2 0 Haemolysin expression modulating protein NPV_P10 PF05531.12 gi|20091370|ref|NP_617445.1| - 1.4 9.5 19.5 26 5.4 0.3 4.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein OmpH PF03938.14 gi|20091370|ref|NP_617445.1| - 2 8.7 20.6 11 6.4 14.6 3.0 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) WXG100 PF06013.12 gi|20091370|ref|NP_617445.1| - 2 8.7 10.7 2.2 8.6 1.0 3.8 3 1 1 4 4 4 0 Proteins of 100 residues with WXG MerR-DNA-bind PF09278.11 gi|20091370|ref|NP_617445.1| - 2.1 9.0 13.3 5.9 7.5 1.8 4.3 3 2 2 5 5 5 0 MerR, DNA binding Pedibin PF08182.11 gi|20091370|ref|NP_617445.1| - 2.5 8.0 9.4 11 5.9 0.6 2.9 2 0 0 2 2 2 0 Pedibin/Hym-346 family Fib_alpha PF08702.10 gi|20091370|ref|NP_617445.1| - 2.9 8.1 15.5 23 5.2 10.7 3.1 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family ABC_tran_CTD PF16326.5 gi|20091370|ref|NP_617445.1| - 3 8.1 30.3 2.1 8.7 0.3 4.9 2 1 4 6 6 6 0 ABC transporter C-terminal domain Baculo_PEP_C PF04513.12 gi|20091370|ref|NP_617445.1| - 3.2 7.8 17.0 11 6.1 5.2 3.2 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DNA_topoisoIV PF00521.20 gi|20091370|ref|NP_617445.1| - 4.1 6.2 8.0 11 4.8 0.0 2.1 2 0 0 2 2 2 0 DNA gyrase/topoisomerase IV, subunit A Z1 PF10593.9 gi|20091370|ref|NP_617445.1| - 4.2 6.8 7.5 8 5.9 3.4 2.3 1 1 1 2 2 2 0 Z1 domain DUF4635 PF15466.6 gi|20091370|ref|NP_617445.1| - 4.7 6.7 7.7 0.65 9.5 1.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) Exonuc_VII_L PF02601.15 gi|20091370|ref|NP_617445.1| - 5.1 6.6 8.0 14 5.1 8.1 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit YpjP PF14005.6 gi|20091370|ref|NP_617445.1| - 5.4 7.1 6.6 16 5.6 0.0 3.0 2 1 1 3 3 3 0 YpjP-like protein TBCC_N PF16752.5 gi|20091370|ref|NP_617445.1| - 5.7 7.4 13.9 4.2 7.9 5.0 3.2 2 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain Syntaxin-6_N PF09177.11 gi|20091370|ref|NP_617445.1| - 8.5 7.0 15.1 26 5.5 10.9 3.0 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DREPP PF05558.12 gi|20091370|ref|NP_617445.1| - 9.7 6.0 9.7 4.2 7.2 0.3 2.7 2 1 0 2 2 2 0 DREPP plasma membrane polypeptide HTH_20 PF12840.7 gi|20091371|ref|NP_617446.1| - 1.5e-13 50.6 0.3 2.2e-13 50.1 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20091371|ref|NP_617446.1| - 2.3e-05 24.1 3.2 5.1e-05 23.0 0.2 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20091371|ref|NP_617446.1| - 9.2e-05 22.3 0.2 0.00016 21.5 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20091371|ref|NP_617446.1| - 9.5e-05 21.9 1.6 0.00013 21.4 0.9 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20091371|ref|NP_617446.1| - 0.00012 21.9 0.3 0.00023 21.0 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|20091371|ref|NP_617446.1| - 0.0011 18.8 0.2 0.0026 17.7 0.2 1.6 1 0 0 1 1 1 1 MarR family DUF742 PF05331.11 gi|20091371|ref|NP_617446.1| - 0.0018 18.1 0.0 0.003 17.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF742) TFIIE_alpha PF02002.17 gi|20091371|ref|NP_617446.1| - 0.0068 16.2 0.7 0.011 15.6 0.7 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|20091371|ref|NP_617446.1| - 0.0082 16.6 0.2 0.018 15.5 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|20091371|ref|NP_617446.1| - 0.1 12.4 0.8 0.84 9.5 0.3 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|20091371|ref|NP_617446.1| - 0.12 12.7 0.1 0.3 11.4 0.1 1.8 1 1 0 1 1 1 0 Transcriptional regulator Methyltr_RsmF_N PF17125.5 gi|20091371|ref|NP_617446.1| - 0.18 12.3 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF GTP_EFTU_D4 PF14578.6 gi|20091372|ref|NP_617447.1| - 0.088 12.7 0.1 0.57 10.1 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu domain 4 CarboxypepD_reg PF13620.6 gi|20091373|ref|NP_617448.1| - 0.00021 21.5 0.2 0.0006 20.0 0.1 1.9 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain MarR PF01047.22 gi|20091373|ref|NP_617448.1| - 0.0011 18.9 0.1 0.0021 18.0 0.1 1.4 1 0 0 1 1 1 1 MarR family BatD PF13584.6 gi|20091373|ref|NP_617448.1| - 0.0013 17.6 0.0 0.0028 16.5 0.0 1.5 1 0 0 1 1 1 1 Oxygen tolerance HTH_24 PF13412.6 gi|20091373|ref|NP_617448.1| - 0.002 17.7 0.6 0.0033 16.9 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|20091373|ref|NP_617448.1| - 0.0064 16.4 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|20091373|ref|NP_617448.1| - 0.023 14.7 0.5 0.039 13.9 0.5 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|20091373|ref|NP_617448.1| - 0.025 15.1 0.1 0.053 14.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain CarbopepD_reg_2 PF13715.6 gi|20091373|ref|NP_617448.1| - 0.098 12.7 0.1 0.098 12.7 0.1 2.4 3 1 1 4 4 4 0 CarboxypepD_reg-like domain Gram_pos_anchor PF00746.21 gi|20091373|ref|NP_617448.1| - 0.16 11.9 0.3 0.32 11.0 0.3 1.5 1 0 0 1 1 1 0 LPXTG cell wall anchor motif TMEM51 PF15345.6 gi|20091373|ref|NP_617448.1| - 3.2 7.5 10.7 19 5.0 10.7 2.1 1 1 0 1 1 1 0 Transmembrane protein 51 DUF4405 PF14358.6 gi|20091374|ref|NP_617449.1| - 1.7e-10 41.3 11.9 2.2e-10 40.9 11.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ferric_reduct PF01794.19 gi|20091374|ref|NP_617449.1| - 0.0013 18.8 0.9 0.0015 18.6 0.9 1.1 1 0 0 1 1 1 1 Ferric reductase like transmembrane component Ni_hydr_CYTB PF01292.20 gi|20091374|ref|NP_617449.1| - 0.016 14.8 3.8 0.019 14.6 3.8 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 ABC_tran PF00005.27 gi|20091375|ref|NP_617450.1| - 1.3e-31 109.9 0.0 2.4e-31 109.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20091375|ref|NP_617450.1| - 2.5e-07 30.4 0.0 1e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20091375|ref|NP_617450.1| - 1.7e-06 28.1 1.2 0.042 13.7 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20091375|ref|NP_617450.1| - 1.3e-05 25.7 0.0 2.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20091375|ref|NP_617450.1| - 0.0011 18.7 0.3 0.0024 17.6 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20091375|ref|NP_617450.1| - 0.0014 18.5 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_14 PF13173.6 gi|20091375|ref|NP_617450.1| - 0.0019 18.3 0.0 0.012 15.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|20091375|ref|NP_617450.1| - 0.0055 15.4 0.0 0.15 10.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20091375|ref|NP_617450.1| - 0.0068 16.7 0.1 0.033 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|20091375|ref|NP_617450.1| - 0.019 15.5 0.0 0.24 11.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|20091375|ref|NP_617450.1| - 0.036 13.8 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|20091375|ref|NP_617450.1| - 0.036 14.6 0.5 0.13 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|20091375|ref|NP_617450.1| - 0.081 12.3 0.1 17 4.8 0.0 3.2 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.22 gi|20091375|ref|NP_617450.1| - 0.084 13.3 0.0 0.23 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DUF2119 PF09892.9 gi|20091375|ref|NP_617450.1| - 0.085 12.2 0.1 6.5 6.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) ATPase_2 PF01637.18 gi|20091375|ref|NP_617450.1| - 0.096 12.6 0.6 0.61 10.0 0.0 2.5 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|20091375|ref|NP_617450.1| - 0.12 12.5 0.9 0.63 10.1 0.9 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|20091375|ref|NP_617450.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.9 gi|20091376|ref|NP_617451.1| - 4.3e-15 55.7 3.9 6.3e-07 29.6 0.0 4.4 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|20091376|ref|NP_617451.1| - 2.8e-10 40.4 4.3 0.00095 19.4 0.2 3.6 2 1 1 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|20091376|ref|NP_617451.1| - 2.5e-08 34.1 17.4 0.0087 16.3 0.1 4.1 3 1 1 4 4 4 3 CARDB Wzt_C PF14524.6 gi|20091376|ref|NP_617451.1| - 0.0015 18.6 1.2 0.033 14.2 0.1 3.4 2 1 0 4 4 4 1 Wzt C-terminal domain A2M PF00207.22 gi|20091376|ref|NP_617451.1| - 0.011 15.5 0.5 0.74 9.7 0.0 3.6 2 1 2 4 4 4 0 Alpha-2-macroglobulin family Ig_GlcNase PF18368.1 gi|20091376|ref|NP_617451.1| - 0.022 14.9 3.4 14 5.9 0.0 3.9 4 0 0 4 4 4 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF1573 PF07610.11 gi|20091376|ref|NP_617451.1| - 0.036 14.1 0.3 18 5.4 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1573) fn3_6 PF17766.1 gi|20091376|ref|NP_617451.1| - 0.073 13.3 3.3 0.58 10.4 0.1 3.5 2 2 2 4 4 4 0 Fibronectin type-III domain FixG_C PF11614.8 gi|20091376|ref|NP_617451.1| - 0.1 12.8 5.2 25 5.1 0.1 4.2 3 2 2 5 5 5 0 IG-like fold at C-terminal of FixG, putative oxidoreductase MacB_PCD PF12704.7 gi|20091377|ref|NP_617452.1| - 8.3e-32 111.1 4.6 8.3e-32 111.1 4.6 2.9 3 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20091377|ref|NP_617452.1| - 3.1e-15 56.4 13.9 7.1e-15 55.3 4.0 3.2 3 0 0 3 3 3 2 FtsX-like permease family Yip1 PF04893.17 gi|20091377|ref|NP_617452.1| - 0.085 12.6 13.5 0.44 10.3 10.8 2.3 2 0 0 2 2 2 0 Yip1 domain SpoV PF08183.11 gi|20091377|ref|NP_617452.1| - 6.9 6.7 6.1 19 5.3 6.1 1.8 1 0 0 1 1 1 0 Stage V sporulation protein family DUF1724 PF08350.10 gi|20091378|ref|NP_617453.1| - 1.9e-15 56.8 0.1 5.6e-15 55.2 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|20091378|ref|NP_617453.1| - 1.1e-09 38.2 0.0 1.2e-08 34.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20091378|ref|NP_617453.1| - 1.1e-07 31.5 0.1 3e-07 30.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20091378|ref|NP_617453.1| - 0.00052 19.8 0.0 0.0014 18.5 0.0 1.7 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|20091378|ref|NP_617453.1| - 0.015 15.0 0.6 0.039 13.6 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2089 PF09862.9 gi|20091378|ref|NP_617453.1| - 0.064 13.3 0.1 0.32 11.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) TrmB PF01978.19 gi|20091378|ref|NP_617453.1| - 0.075 12.9 0.0 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|20091378|ref|NP_617453.1| - 0.078 12.5 2.1 0.21 11.2 0.1 2.7 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3363 PF11843.8 gi|20091378|ref|NP_617453.1| - 0.14 11.0 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) Transglut_core PF01841.19 gi|20091379|ref|NP_617454.1| - 0.00072 20.0 0.0 0.0018 18.7 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like superfamily CHASE4 PF05228.13 gi|20091380|ref|NP_617455.1| - 1.1e-40 139.0 0.1 1.3e-39 135.6 0.1 2.2 2 0 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.26 gi|20091380|ref|NP_617455.1| - 6.7e-30 103.9 0.0 1.4e-29 102.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20091380|ref|NP_617455.1| - 3e-17 62.4 0.4 1.6e-16 60.0 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|20091380|ref|NP_617455.1| - 7.3e-05 23.0 0.1 0.0013 19.0 0.1 2.3 1 1 0 1 1 1 1 PAS fold HAMP PF00672.25 gi|20091380|ref|NP_617455.1| - 0.00041 20.7 0.0 0.00087 19.6 0.0 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 gi|20091380|ref|NP_617455.1| - 0.00065 19.6 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain dCache_3 PF14827.6 gi|20091380|ref|NP_617455.1| - 0.0061 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase HATPase_c_3 PF13589.6 gi|20091380|ref|NP_617455.1| - 0.015 15.2 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20091380|ref|NP_617455.1| - 0.015 15.3 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CxxCxxCC PF03692.15 gi|20091381|ref|NP_617456.1| - 1.2e-05 25.9 2.2 2.7e-05 24.8 0.6 2.3 2 1 1 3 3 3 1 Putative zinc- or iron-chelating domain Kri1_C PF12936.7 gi|20091381|ref|NP_617456.1| - 0.057 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 KRI1-like family C-terminal CCDC92 PF14916.6 gi|20091381|ref|NP_617456.1| - 0.093 12.5 0.2 0.19 11.5 0.2 1.5 1 0 0 1 1 1 0 Coiled-coil domain of unknown function CHASE4 PF05228.13 gi|20091382|ref|NP_617457.1| - 2.6e-40 137.8 0.0 6.9e-37 126.7 0.1 2.3 2 0 0 2 2 2 2 CHASE4 domain HATPase_c PF02518.26 gi|20091382|ref|NP_617457.1| - 8.9e-29 100.3 0.1 1.9e-28 99.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20091382|ref|NP_617457.1| - 1.1e-19 70.2 1.0 7.4e-19 67.5 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|20091382|ref|NP_617457.1| - 2.1e-15 56.9 0.0 3.9e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|20091382|ref|NP_617457.1| - 4.9e-06 26.7 0.1 5.4e-05 23.4 0.0 2.8 2 1 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|20091382|ref|NP_617457.1| - 1.2e-05 25.2 0.0 4.1e-05 23.4 0.0 2.0 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|20091382|ref|NP_617457.1| - 0.00068 19.6 0.0 0.0028 17.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|20091382|ref|NP_617457.1| - 0.0048 16.7 0.0 0.014 15.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|20091382|ref|NP_617457.1| - 0.0055 17.1 0.0 0.013 15.9 0.0 1.6 1 0 0 1 1 1 1 HAMP domain PAS PF00989.25 gi|20091382|ref|NP_617457.1| - 0.13 12.3 0.1 2.7 8.0 0.1 2.8 2 1 0 2 2 2 0 PAS fold Ly49 PF08391.10 gi|20091382|ref|NP_617457.1| - 0.89 9.9 3.1 41 4.6 0.1 3.2 3 0 0 3 3 3 0 Ly49-like protein, N-terminal region Fungal_TACC PF12709.7 gi|20091382|ref|NP_617457.1| - 2.6 8.5 6.1 4.1 7.9 3.7 2.4 2 0 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF1638 PF07796.11 gi|20091383|ref|NP_617458.1| - 4.5e-35 121.1 0.0 6.2e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Putative_PNPOx PF01243.20 gi|20091385|ref|NP_617460.1| - 2.2e-19 69.4 0.0 2.7e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|20091385|ref|NP_617460.1| - 0.0098 15.5 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Pyridox_oxase_2 PF12766.7 gi|20091385|ref|NP_617460.1| - 0.21 12.2 0.0 0.28 11.8 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase dCMP_cyt_deam_1 PF00383.23 gi|20091386|ref|NP_617461.1| - 1.3e-10 41.0 0.0 2.1e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|20091386|ref|NP_617461.1| - 1.2e-06 28.4 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase Putative_PNPOx PF01243.20 gi|20091387|ref|NP_617462.1| - 3.3e-18 65.7 0.0 4.1e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|20091387|ref|NP_617462.1| - 3.4e-10 39.7 0.0 4.2e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 gi|20091387|ref|NP_617462.1| - 1.3e-07 31.7 0.0 1.8e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Aromatic_hydrox PF11723.8 gi|20091387|ref|NP_617462.1| - 0.061 12.8 0.0 0.086 12.3 0.0 1.3 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase DUF1521 PF07481.11 gi|20091387|ref|NP_617462.1| - 0.067 13.2 0.2 0.091 12.8 0.2 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1521) PAS_3 PF08447.12 gi|20091388|ref|NP_617463.1| - 1.1e-19 70.5 0.1 1.8e-19 69.8 0.1 1.4 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|20091388|ref|NP_617463.1| - 4.8e-13 49.6 0.0 6.6e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|20091388|ref|NP_617463.1| - 8.9e-05 22.8 0.0 0.00014 22.2 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|20091388|ref|NP_617463.1| - 0.00082 20.0 0.0 0.0013 19.4 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|20091388|ref|NP_617463.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|20091388|ref|NP_617463.1| - 0.004 17.4 0.0 0.0078 16.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|20091388|ref|NP_617463.1| - 0.014 15.7 0.1 0.028 14.7 0.1 1.5 1 0 0 1 1 1 0 PAS domain SUKH_6 PF14568.6 gi|20091388|ref|NP_617463.1| - 0.082 13.3 2.1 0.12 12.8 0.2 2.2 2 1 0 2 2 2 0 SMI1-KNR4 cell-wall SMI1_KNR4 PF09346.10 gi|20091388|ref|NP_617463.1| - 0.088 13.2 0.1 0.16 12.4 0.1 1.7 1 1 0 1 1 1 0 SMI1 / KNR4 family (SUKH-1) HEAT_2 PF13646.6 gi|20091389|ref|NP_617464.1| - 5.3e-40 135.7 10.3 1.3e-13 51.1 0.7 4.3 2 1 1 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|20091389|ref|NP_617464.1| - 4.4e-17 60.7 13.8 0.21 11.9 0.1 10.0 11 0 0 11 11 10 5 HEAT repeat Cnd1 PF12717.7 gi|20091389|ref|NP_617464.1| - 1.7e-07 31.4 1.6 0.018 15.1 0.0 5.0 2 2 1 4 4 4 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|20091389|ref|NP_617464.1| - 7e-06 24.9 0.1 0.012 14.2 0.0 3.0 1 1 0 2 2 2 2 Adaptin N terminal region RTP1_C1 PF10363.9 gi|20091389|ref|NP_617464.1| - 2.7e-05 24.3 0.4 0.028 14.6 0.1 4.9 1 1 3 4 4 4 1 Required for nuclear transport of RNA pol II C-terminus 1 MIF4G_like_2 PF09090.11 gi|20091389|ref|NP_617464.1| - 0.0041 16.6 0.2 1.9 7.9 0.0 3.9 4 1 0 4 4 4 1 MIF4G like API5 PF05918.11 gi|20091389|ref|NP_617464.1| - 0.0053 15.6 0.4 4.2 6.1 0.0 4.2 4 1 0 5 5 5 1 Apoptosis inhibitory protein 5 (API5) RICTOR_V PF14668.6 gi|20091389|ref|NP_617464.1| - 0.0098 16.1 0.0 13 6.1 0.0 3.7 3 1 1 4 4 4 1 Rapamycin-insensitive companion of mTOR, domain 5 FCH PF00611.23 gi|20091389|ref|NP_617464.1| - 0.093 13.0 2.9 3.1 8.1 0.1 4.0 4 2 0 4 4 4 0 Fes/CIP4, and EFC/F-BAR homology domain DUF4363 PF14276.6 gi|20091389|ref|NP_617464.1| - 0.14 12.3 4.7 1.9 8.7 0.1 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4363) Cohesin_HEAT PF12765.7 gi|20091389|ref|NP_617464.1| - 0.19 12.1 4.5 1.3 9.4 0.0 4.3 4 0 0 4 4 4 0 HEAT repeat associated with sister chromatid cohesion HEAT_EZ PF13513.6 gi|20091389|ref|NP_617464.1| - 0.55 10.8 5.8 31 5.2 0.0 5.0 7 0 0 7 7 6 0 HEAT-like repeat NFRKB_winged PF14465.6 gi|20091389|ref|NP_617464.1| - 3.6 7.8 6.1 1e+02 3.2 0.1 4.5 3 2 3 6 6 6 0 NFRKB Winged Helix-like DDE_Tnp_1_6 PF13751.6 gi|20091390|ref|NP_617465.1| - 6.2e-19 68.5 0.2 7.5e-19 68.2 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20091390|ref|NP_617465.1| - 0.0007 19.3 0.0 0.0009 18.9 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Ribosomal_L11 PF00298.19 gi|20091390|ref|NP_617465.1| - 0.062 13.8 0.4 0.1 13.1 0.4 1.5 1 1 0 1 1 1 0 Ribosomal protein L11, RNA binding domain DUF4096 PF13340.6 gi|20091391|ref|NP_617466.1| - 2.2e-27 95.0 0.2 6e-27 93.7 0.2 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20091391|ref|NP_617466.1| - 1e-15 58.0 6.7 4e-15 56.1 6.7 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20091391|ref|NP_617466.1| - 2e-12 47.3 1.6 4.7e-12 46.1 0.5 2.0 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|20091392|ref|NP_617467.1| - 9.5e-16 57.6 0.0 1.8e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|20091392|ref|NP_617467.1| - 6.3e-15 55.4 0.3 1e-14 54.7 0.3 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|20091392|ref|NP_617467.1| - 0.028 14.7 5.8 0.072 13.3 3.7 2.5 2 1 0 2 2 2 0 Transposase DDE domain AhpC-TSA PF00578.21 gi|20091392|ref|NP_617467.1| - 0.042 13.8 0.4 0.084 12.8 0.4 1.5 1 0 0 1 1 1 0 AhpC/TSA family RE_XamI PF09572.10 gi|20091392|ref|NP_617467.1| - 0.052 13.2 0.0 0.12 12.0 0.0 1.6 1 1 0 1 1 1 0 XamI restriction endonuclease MULE PF10551.9 gi|20091393|ref|NP_617468.1| - 0.0004 20.7 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20091393|ref|NP_617468.1| - 0.069 12.9 0.2 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20091393|ref|NP_617468.1| - 0.2 12.2 2.2 0.64 10.6 2.2 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20091393|ref|NP_617468.1| - 0.2 11.4 1.4 0.6 9.9 1.4 1.8 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20091393|ref|NP_617468.1| - 0.57 10.1 3.5 2 8.3 0.4 2.4 2 0 0 2 2 2 0 HIT zinc finger DUF11 PF01345.18 gi|20091394|ref|NP_617469.1| - 1.8e-19 69.8 6.4 4.1e-13 49.4 0.3 3.6 3 0 0 3 3 3 3 Domain of unknown function DUF11 BatD PF13584.6 gi|20091394|ref|NP_617469.1| - 3.6e-14 52.5 3.8 3.6e-08 32.7 0.6 2.7 2 1 0 3 3 3 2 Oxygen tolerance CARDB PF07705.11 gi|20091394|ref|NP_617469.1| - 3.8e-08 33.5 10.8 0.016 15.5 0.1 3.8 4 0 0 4 4 4 3 CARDB TRAP_beta PF05753.14 gi|20091394|ref|NP_617469.1| - 2.1e-06 27.3 5.4 0.032 13.6 0.2 3.3 2 1 1 3 3 3 3 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.10 gi|20091394|ref|NP_617469.1| - 0.00071 19.6 1.2 0.22 11.5 0.1 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF2393) bMG10 PF17973.1 gi|20091394|ref|NP_617469.1| - 0.0036 17.5 3.3 8.2 6.6 0.1 4.9 2 2 3 5 5 5 1 Bacterial Alpha-2-macroglobulin MG10 domain Top6b_C PF18000.1 gi|20091394|ref|NP_617469.1| - 0.022 14.9 8.8 0.48 10.6 0.2 4.6 4 2 1 5 5 5 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain NPCBM_assoc PF10633.9 gi|20091394|ref|NP_617469.1| - 0.05 13.9 4.7 11 6.4 0.1 4.0 5 0 0 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Glyco_hydro_2 PF00703.21 gi|20091394|ref|NP_617469.1| - 0.056 14.1 8.7 4.1 8.1 0.5 3.9 3 0 0 3 3 3 0 Glycosyl hydrolases family 2 DUF1411 PF07199.11 gi|20091394|ref|NP_617469.1| - 0.074 12.7 3.6 0.33 10.6 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1411) DHHA1 PF02272.19 gi|20091395|ref|NP_617470.1| - 5.2e-16 59.3 0.2 1.2e-15 58.1 0.2 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|20091395|ref|NP_617470.1| - 0.00017 21.8 0.0 0.00029 21.0 0.0 1.3 1 0 0 1 1 1 1 DHH family MMR_HSR1 PF01926.23 gi|20091396|ref|NP_617471.1| - 1.8e-18 66.7 0.0 2.5e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|20091396|ref|NP_617471.1| - 1.9e-11 43.7 0.1 5.9e-10 38.9 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.18 gi|20091396|ref|NP_617471.1| - 0.00015 21.1 0.0 0.0003 20.2 0.0 1.5 1 1 0 1 1 1 1 Septin RsgA_GTPase PF03193.16 gi|20091396|ref|NP_617471.1| - 0.00051 20.0 0.9 0.031 14.2 0.3 2.8 3 1 0 3 3 3 1 RsgA GTPase GTP_EFTU PF00009.27 gi|20091396|ref|NP_617471.1| - 0.00089 18.9 0.0 0.02 14.4 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|20091396|ref|NP_617471.1| - 0.0024 18.0 0.1 0.0046 17.0 0.1 1.4 1 1 0 1 1 1 1 Dynamin family Roc PF08477.13 gi|20091396|ref|NP_617471.1| - 0.025 14.8 0.2 0.05 13.8 0.0 1.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|20091396|ref|NP_617471.1| - 0.091 13.3 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|20091396|ref|NP_617471.1| - 0.15 11.4 0.1 0.35 10.3 0.1 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DNA_ligase_A_M PF01068.21 gi|20091397|ref|NP_617472.1| - 5e-57 192.8 0.1 8.2e-57 192.1 0.1 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|20091397|ref|NP_617472.1| - 4.5e-34 118.2 2.0 2.5e-33 115.8 0.3 2.6 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|20091397|ref|NP_617472.1| - 1.3e-20 73.8 0.0 4e-20 72.2 0.0 1.9 1 1 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|20091397|ref|NP_617472.1| - 8.6e-06 26.1 0.0 1.8e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 RNA ligase mRNA_cap_enzyme PF01331.19 gi|20091397|ref|NP_617472.1| - 0.0026 17.6 0.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 2 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.19 gi|20091398|ref|NP_617473.1| - 6.2e-57 192.3 0.1 1.1e-56 191.4 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|20091398|ref|NP_617473.1| - 6.1e-10 39.8 0.5 1.1e-09 39.0 0.5 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|20091398|ref|NP_617473.1| - 9.4e-05 22.2 0.3 0.00022 21.0 0.3 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|20091398|ref|NP_617473.1| - 0.0017 18.6 0.4 0.0052 17.0 0.4 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DXP_reductoisom PF02670.16 gi|20091398|ref|NP_617473.1| - 0.0058 17.3 0.3 0.013 16.2 0.3 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF2007 PF09413.10 gi|20091399|ref|NP_617474.1| - 0.048 13.8 0.1 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein Sigma70_r1_1 PF03979.14 gi|20091399|ref|NP_617474.1| - 0.094 12.8 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 HTH_24 PF13412.6 gi|20091400|ref|NP_617475.1| - 1e-05 25.0 0.7 1.9e-05 24.1 0.7 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding CarboxypepD_reg PF13620.6 gi|20091400|ref|NP_617475.1| - 0.00011 22.4 0.1 0.0018 18.5 0.1 2.5 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain HTH_Crp_2 PF13545.6 gi|20091400|ref|NP_617475.1| - 0.00027 20.8 0.2 0.00054 19.9 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|20091400|ref|NP_617475.1| - 0.0028 17.5 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|20091400|ref|NP_617475.1| - 0.0033 17.3 0.0 0.008 16.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|20091400|ref|NP_617475.1| - 0.0034 17.3 0.1 0.0073 16.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|20091400|ref|NP_617475.1| - 0.022 14.5 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|20091400|ref|NP_617475.1| - 0.028 14.9 0.0 0.049 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|20091400|ref|NP_617475.1| - 0.03 14.7 0.0 0.059 13.7 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_micro PF17007.5 gi|20091400|ref|NP_617475.1| - 0.077 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 HTH-like CarbopepD_reg_2 PF13715.6 gi|20091400|ref|NP_617475.1| - 0.077 13.0 2.1 1.3 9.1 0.1 3.0 2 2 1 3 3 3 0 CarboxypepD_reg-like domain CD34_antigen PF06365.12 gi|20091400|ref|NP_617475.1| - 0.094 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 CD34/Podocalyxin family MNHE PF01899.16 gi|20091400|ref|NP_617475.1| - 0.13 12.0 0.1 0.34 10.7 0.0 1.7 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit DUF3391 PF11871.8 gi|20091401|ref|NP_617476.1| - 3.1 8.4 7.1 8.7 6.9 3.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) MULE PF10551.9 gi|20091403|ref|NP_617478.1| - 6.2e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091403|ref|NP_617478.1| - 0.017 15.1 0.7 5 7.2 0.4 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091403|ref|NP_617478.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091403|ref|NP_617478.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091403|ref|NP_617478.1| - 0.034 14.0 0.7 0.082 12.7 0.4 1.8 1 1 0 1 1 1 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091403|ref|NP_617478.1| - 0.062 12.1 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091403|ref|NP_617478.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091403|ref|NP_617478.1| - 0.26 11.8 4.8 0.5 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain CxC5 PF18718.1 gi|20091403|ref|NP_617478.1| - 0.33 11.1 4.1 0.84 9.7 4.1 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20091403|ref|NP_617478.1| - 0.4 10.7 2.7 78 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091403|ref|NP_617478.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger IstB_IS21 PF01695.17 gi|20091404|ref|NP_617479.1| - 0.0014 18.4 0.2 0.0032 17.2 0.0 1.6 1 1 1 2 2 2 1 IstB-like ATP binding protein DUF1897 PF09005.10 gi|20091404|ref|NP_617479.1| - 0.16 11.5 0.6 0.25 10.9 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1897) rve PF00665.26 gi|20091405|ref|NP_617480.1| - 6.8e-25 87.6 0.0 1.3e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20091405|ref|NP_617480.1| - 6.5e-05 22.6 0.0 0.00017 21.3 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20091405|ref|NP_617480.1| - 0.00027 20.9 0.0 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|20091405|ref|NP_617480.1| - 0.0025 16.9 0.0 0.0053 15.8 0.0 1.5 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20091405|ref|NP_617480.1| - 0.0035 17.1 0.1 0.0088 15.8 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20091405|ref|NP_617480.1| - 0.0071 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|20091405|ref|NP_617480.1| - 0.014 15.1 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|20091405|ref|NP_617480.1| - 0.017 15.0 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20091405|ref|NP_617480.1| - 0.029 14.3 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|20091405|ref|NP_617480.1| - 0.031 14.1 0.0 0.1 12.4 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|20091405|ref|NP_617480.1| - 0.038 13.8 0.0 0.095 12.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_1 PF13411.6 gi|20091405|ref|NP_617480.1| - 0.053 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_7 PF02796.15 gi|20091405|ref|NP_617480.1| - 0.057 13.5 0.2 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase MetOD2 PF18548.1 gi|20091405|ref|NP_617480.1| - 0.061 13.4 0.0 5.8 7.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 DUF746 PF05344.11 gi|20091405|ref|NP_617480.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_36 PF13730.6 gi|20091405|ref|NP_617480.1| - 0.074 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|20091405|ref|NP_617480.1| - 0.11 12.6 0.2 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 gi|20091405|ref|NP_617480.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20091405|ref|NP_617480.1| - 0.13 11.9 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) WD40 PF00400.32 gi|20091406|ref|NP_617481.1| - 7.2e-94 305.1 50.6 1.3e-06 29.0 0.4 17.2 17 0 0 17 17 17 15 WD domain, G-beta repeat Ge1_WD40 PF16529.5 gi|20091406|ref|NP_617481.1| - 3.6e-40 137.9 22.5 0.015 14.3 0.0 14.9 1 1 13 15 15 15 13 WD40 region of Ge1, enhancer of mRNA-decapping protein ANAPC4_WD40 PF12894.7 gi|20091406|ref|NP_617481.1| - 5.6e-39 132.3 19.0 0.0046 17.2 0.1 14.7 1 1 13 15 15 15 10 Anaphase-promoting complex subunit 4 WD40 domain eIF2A PF08662.11 gi|20091406|ref|NP_617481.1| - 2.7e-35 122.0 24.8 7e-05 22.8 0.1 8.3 1 1 6 7 7 7 7 Eukaryotic translation initiation factor eIF2A PD40 PF07676.12 gi|20091406|ref|NP_617481.1| - 6.8e-23 80.1 12.5 2.9 7.9 0.0 15.7 16 0 0 16 16 16 1 WD40-like Beta Propeller Repeat Nup160 PF11715.8 gi|20091406|ref|NP_617481.1| - 1.3e-13 50.4 33.4 0.12 10.9 0.1 11.4 3 2 7 11 11 11 5 Nucleoporin Nup120/160 DUF5570 PF17731.1 gi|20091406|ref|NP_617481.1| - 2.1e-13 50.4 37.3 0.51 10.4 0.4 14.1 2 2 12 14 14 14 3 Family of unknown function (DUF5570) Cytochrom_D1 PF02239.16 gi|20091406|ref|NP_617481.1| - 2.9e-12 45.8 18.1 0.0034 16.0 0.1 7.1 3 3 2 7 7 7 6 Cytochrome D1 heme domain HPS3_N PF14761.6 gi|20091406|ref|NP_617481.1| - 9.9e-09 35.0 0.7 6.6 6.2 0.0 7.1 2 2 4 8 8 8 1 Hermansky-Pudlak syndrome 3 Big_7 PF17957.1 gi|20091406|ref|NP_617481.1| - 2.4e-05 25.0 59.2 0.33 11.7 0.4 13.6 1 1 11 13 13 13 3 Bacterial Ig domain WD40_3 PF15911.5 gi|20091406|ref|NP_617481.1| - 8.8e-05 22.4 0.6 19 5.3 0.0 5.4 5 1 0 5 5 5 0 WD domain, G-beta repeat WD40_like PF17005.5 gi|20091406|ref|NP_617481.1| - 0.00025 20.5 12.5 0.9 8.8 0.3 7.4 7 2 1 8 8 8 1 WD40-like domain DUF3332 PF11810.8 gi|20091406|ref|NP_617481.1| - 0.00048 19.8 8.0 6.8 6.3 0.0 6.2 1 1 3 6 6 6 2 Domain of unknown function (DUF3332) DUF1797 PF08796.10 gi|20091406|ref|NP_617481.1| - 0.0011 19.0 0.0 13 6.0 0.0 6.6 5 2 3 8 8 8 0 Protein of unknown function (DUF1797) Proteasome_A_N PF10584.9 gi|20091406|ref|NP_617481.1| - 0.0081 15.8 30.5 9.5 6.0 0.0 12.4 14 0 0 14 14 14 1 Proteasome subunit A N-terminal signature CD34_antigen PF06365.12 gi|20091406|ref|NP_617481.1| - 0.0083 15.7 0.2 0.017 14.7 0.2 1.4 1 0 0 1 1 1 1 CD34/Podocalyxin family Tis11B_N PF04553.12 gi|20091406|ref|NP_617481.1| - 0.014 16.0 0.5 7.2 7.2 0.0 3.9 3 0 0 3 3 3 0 Tis11B like protein, N terminus Me-amine-dh_H PF06433.11 gi|20091406|ref|NP_617481.1| - 0.037 12.9 14.4 2 7.2 0.1 6.1 5 1 1 7 7 7 0 Methylamine dehydrogenase heavy chain (MADH) Phage_integrase PF00589.22 gi|20091408|ref|NP_617483.1| - 1.7e-07 31.2 0.0 3e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|20091408|ref|NP_617483.1| - 2.6e-05 24.6 1.1 0.28 11.7 0.1 2.9 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|20091408|ref|NP_617483.1| - 0.00012 22.3 0.1 0.0054 17.0 0.1 2.9 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Lyase_catalyt PF09093.11 gi|20091408|ref|NP_617483.1| - 0.068 12.3 0.2 0.12 11.5 0.2 1.3 1 0 0 1 1 1 0 Lyase, catalytic CAP PF00188.26 gi|20091410|ref|NP_617485.1| - 6.8 7.6 9.4 18 6.2 1.3 3.0 2 1 0 2 2 2 0 Cysteine-rich secretory protein family Laminin_G_3 PF13385.6 gi|20091412|ref|NP_617487.1| - 2.9e-14 53.5 4.0 2.9e-14 53.5 4.0 2.3 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.16 gi|20091412|ref|NP_617487.1| - 5.3e-05 22.8 0.6 5.3e-05 22.8 0.6 2.2 2 0 0 2 2 2 1 Sialidase, N-terminal domain Pentaxin PF00354.17 gi|20091412|ref|NP_617487.1| - 0.0019 17.9 1.3 0.0049 16.6 0.1 2.1 2 0 0 2 2 2 1 Pentaxin family DUF4983 PF16356.5 gi|20091412|ref|NP_617487.1| - 0.049 14.4 1.8 2.3 9.1 0.1 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4983) Imm68 PF15583.6 gi|20091412|ref|NP_617487.1| - 0.14 12.3 0.8 9.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Immunity protein 68 TMEM208_SND2 PF05620.11 gi|20091413|ref|NP_617488.1| - 0.034 13.9 1.9 0.034 13.9 1.9 1.4 1 1 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 DUF2207 PF09972.9 gi|20091414|ref|NP_617489.1| - 0.98 8.1 3.4 1.1 8.0 3.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ATPase_2 PF01637.18 gi|20091417|ref|NP_617492.1| - 0.0013 18.7 0.0 0.0037 17.2 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|20091417|ref|NP_617492.1| - 0.0046 17.5 0.0 0.017 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20091417|ref|NP_617492.1| - 0.0054 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|20091417|ref|NP_617492.1| - 0.0071 16.9 0.0 0.013 16.0 0.0 1.7 1 1 0 1 1 1 1 ABC transporter RNA_helicase PF00910.22 gi|20091417|ref|NP_617492.1| - 0.0079 16.6 0.0 0.019 15.3 0.0 1.7 1 0 0 1 1 1 1 RNA helicase T2SSE PF00437.20 gi|20091417|ref|NP_617492.1| - 0.011 14.9 0.0 0.034 13.2 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|20091417|ref|NP_617492.1| - 0.011 15.6 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.6 gi|20091417|ref|NP_617492.1| - 0.015 15.7 0.0 0.023 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain EPL1 PF10513.9 gi|20091417|ref|NP_617492.1| - 0.039 14.3 0.0 0.27 11.6 0.0 2.1 1 1 0 1 1 1 0 Enhancer of polycomb-like AAA_33 PF13671.6 gi|20091417|ref|NP_617492.1| - 0.045 13.9 0.0 0.083 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|20091417|ref|NP_617492.1| - 0.054 12.7 0.1 0.12 11.6 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|20091417|ref|NP_617492.1| - 0.067 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|20091417|ref|NP_617492.1| - 0.07 13.0 0.0 0.24 11.3 0.0 1.9 1 0 0 1 1 1 0 Adenylylsulphate kinase Sigma54_activ_2 PF14532.6 gi|20091417|ref|NP_617492.1| - 0.093 12.8 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|20091417|ref|NP_617492.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|20091417|ref|NP_617492.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|20091417|ref|NP_617492.1| - 0.19 12.0 0.5 0.58 10.4 0.5 1.8 1 0 0 1 1 1 0 AAA domain EC042_2821 PF18740.1 gi|20091419|ref|NP_617494.1| - 0.012 15.6 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 EC042_2821-lke REase DUF1598 PF07643.11 gi|20091419|ref|NP_617494.1| - 0.017 15.3 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1598) CopG_antitoxin PF12441.8 gi|20091422|ref|NP_617497.1| - 0.16 12.5 0.0 0.21 12.1 0.0 1.1 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system CBM39 PF15886.5 gi|20091423|ref|NP_617498.1| - 0.029 14.2 0.0 0.056 13.4 0.0 1.5 1 1 0 1 1 1 0 Carbohydrate binding domain (family 32) TrkA_C PF02080.21 gi|20091423|ref|NP_617498.1| - 0.044 13.6 0.0 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 TrkA-C domain Cupin_2 PF07883.11 gi|20091423|ref|NP_617498.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Cupin domain Peptidase_A24 PF01478.18 gi|20091424|ref|NP_617499.1| - 2.3e-12 47.3 11.9 3.4e-12 46.7 11.9 1.2 1 0 0 1 1 1 1 Type IV leader peptidase family Phage_integrase PF00589.22 gi|20091425|ref|NP_617500.1| - 8e-10 38.8 0.2 1.3e-09 38.1 0.2 1.3 1 0 0 1 1 1 1 Phage integrase family DUF3278 PF11683.8 gi|20091426|ref|NP_617501.1| - 0.00058 19.9 1.3 0.00058 19.9 1.3 5.2 2 2 2 5 5 5 2 Protein of unknown function (DUF3278) HPS3_C PF14763.6 gi|20091426|ref|NP_617501.1| - 0.031 13.6 2.1 0.032 13.6 0.6 1.7 2 0 0 2 2 2 0 Hermansky-Pudlak syndrome 3, C-terminal DUF3458_C PF17432.2 gi|20091426|ref|NP_617501.1| - 0.2 11.0 0.2 4.2 6.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3458_C) ARM repeats Nitr_red_bet_C PF14711.6 gi|20091426|ref|NP_617501.1| - 0.31 10.8 3.1 2.2 8.1 0.1 3.2 4 0 0 4 4 4 0 Respiratory nitrate reductase beta C-terminal DUF1980 PF09323.10 gi|20091426|ref|NP_617501.1| - 1.6 8.6 12.0 1 9.3 4.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1980) DUF5383 PF17355.2 gi|20091426|ref|NP_617501.1| - 2.7 8.4 15.3 5.6 7.4 0.3 4.7 3 1 2 5 5 5 0 Family of unknown function (DUF5383) Phage_holin_5_2 PF16079.5 gi|20091426|ref|NP_617501.1| - 5.6 7.4 24.7 6 7.3 1.2 5.3 5 0 0 5 5 5 0 Phage holin family Hol44, in holin superfamily V HATPase_c PF02518.26 gi|20091428|ref|NP_617503.1| - 0.0014 19.1 0.1 0.0032 18.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|20091428|ref|NP_617503.1| - 0.0018 18.1 0.2 0.0046 16.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3810 PF12725.7 gi|20091429|ref|NP_617504.1| - 0.076 12.3 1.3 0.095 12.0 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Helitron_like_N PF14214.6 gi|20091430|ref|NP_617505.1| - 0.0055 16.9 1.2 0.89 9.7 0.1 2.5 1 1 0 2 2 2 2 Helitron helicase-like domain at N-terminus Phage_GPA PF05840.13 gi|20091430|ref|NP_617505.1| - 0.0087 15.2 0.2 0.12 11.4 0.2 2.2 1 1 0 1 1 1 1 Bacteriophage replication gene A protein (GPA) DZR PF12773.7 gi|20091431|ref|NP_617506.1| - 0.00066 19.7 4.6 0.042 13.9 3.7 2.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|20091431|ref|NP_617506.1| - 0.065 13.0 7.4 2.5 7.9 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-ACC PF17848.1 gi|20091431|ref|NP_617506.1| - 0.08 13.0 0.0 0.08 13.0 0.0 3.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|20091431|ref|NP_617506.1| - 0.095 13.4 8.0 9.6 7.0 0.3 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|20091431|ref|NP_617506.1| - 0.19 11.9 4.8 4.8 7.4 0.0 3.4 3 0 0 3 3 3 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|20091431|ref|NP_617506.1| - 0.33 11.4 3.2 0.26 11.7 0.8 2.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|20091431|ref|NP_617506.1| - 0.43 10.6 9.8 1.4 9.0 0.8 3.1 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-dskA_traR PF01258.17 gi|20091431|ref|NP_617506.1| - 0.44 10.5 4.8 27 4.8 0.1 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger CpXC PF14353.6 gi|20091431|ref|NP_617506.1| - 0.72 9.9 5.0 0.62 10.1 1.9 2.3 2 1 1 3 3 3 0 CpXC protein zf-IS66 PF13005.7 gi|20091431|ref|NP_617506.1| - 0.78 10.2 11.3 7 7.1 0.1 3.5 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF983 PF06170.12 gi|20091431|ref|NP_617506.1| - 0.83 10.1 3.7 28 5.2 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF983) Sgf11 PF08209.11 gi|20091431|ref|NP_617506.1| - 0.84 9.3 6.8 22 4.7 0.3 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.11 gi|20091431|ref|NP_617506.1| - 1 9.3 13.0 2.2 8.3 0.2 3.2 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|20091431|ref|NP_617506.1| - 1.3 8.5 9.6 0.84 9.1 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|20091431|ref|NP_617506.1| - 1.7 9.0 0.1 1.7 9.0 0.1 3.1 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain zf-Mss51 PF13824.6 gi|20091431|ref|NP_617506.1| - 8.5 6.6 12.8 0.6 10.2 1.3 2.9 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Spc42p PF11544.8 gi|20091432|ref|NP_617507.1| - 0.15 12.0 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Spindle pole body component Spc42p TPR_1 PF00515.28 gi|20091435|ref|NP_617510.1| - 7.6e-11 41.4 0.0 1.4e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20091435|ref|NP_617510.1| - 4.7e-08 32.6 0.2 1.1e-07 31.5 0.2 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091435|ref|NP_617510.1| - 4.5e-07 29.5 0.0 9.1e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091435|ref|NP_617510.1| - 3.3e-05 23.5 0.0 6.4e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 TPR repeat TPR_12 PF13424.6 gi|20091435|ref|NP_617510.1| - 6.2e-05 23.2 0.0 8.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091435|ref|NP_617510.1| - 8e-05 22.4 0.0 0.00021 21.1 0.0 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20091435|ref|NP_617510.1| - 0.00071 19.3 0.3 0.00081 19.1 0.3 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain Mak16 PF04874.14 gi|20091435|ref|NP_617510.1| - 0.0034 17.9 8.0 0.11 13.1 8.0 2.0 1 1 0 1 1 1 1 Mak16 protein C-terminal region RPN7 PF10602.9 gi|20091435|ref|NP_617510.1| - 0.0039 16.9 1.4 0.0059 16.3 1.2 1.5 1 1 0 1 1 1 1 26S proteasome subunit RPN7 DUF2989 PF11207.8 gi|20091435|ref|NP_617510.1| - 0.013 15.3 3.2 0.017 14.9 2.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2989) ParD_antitoxin PF03693.14 gi|20091435|ref|NP_617510.1| - 0.019 15.4 0.0 0.03 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TPR_10 PF13374.6 gi|20091435|ref|NP_617510.1| - 0.027 14.4 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat ST7 PF04184.12 gi|20091435|ref|NP_617510.1| - 0.098 11.1 0.7 0.11 10.9 0.7 1.1 1 0 0 1 1 1 0 ST7 protein TPR_6 PF13174.6 gi|20091435|ref|NP_617510.1| - 0.17 12.6 0.2 0.48 11.2 0.1 1.8 2 0 0 2 2 1 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20091435|ref|NP_617510.1| - 0.2 11.9 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat zf-AN1 PF01428.16 gi|20091436|ref|NP_617511.1| - 9.4e-06 25.7 24.6 0.0049 17.0 8.0 2.4 2 0 0 2 2 2 2 AN1-like Zinc finger FYVE PF01363.21 gi|20091436|ref|NP_617511.1| - 2.5e-05 24.3 9.7 0.014 15.5 0.6 2.4 2 0 0 2 2 2 2 FYVE zinc finger DZR PF12773.7 gi|20091436|ref|NP_617511.1| - 0.051 13.6 20.5 0.57 10.2 7.1 4.0 3 1 0 3 3 3 0 Double zinc ribbon C1_1 PF00130.22 gi|20091436|ref|NP_617511.1| - 0.23 11.4 21.7 0.47 10.4 9.1 2.4 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|20091436|ref|NP_617511.1| - 0.26 10.8 14.5 0.21 11.0 2.4 3.3 2 1 0 2 2 2 0 zinc-ribbon domain IBR PF01485.21 gi|20091436|ref|NP_617511.1| - 0.36 11.1 22.7 0.1 12.9 5.5 2.5 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain DUF3664 PF12406.8 gi|20091436|ref|NP_617511.1| - 0.59 10.8 3.6 1.1 10.0 1.6 2.0 2 0 0 2 2 2 0 Surface protein zf-B_box PF00643.24 gi|20091436|ref|NP_617511.1| - 3.9 7.7 25.2 3 8.1 9.4 2.4 2 0 0 2 2 2 0 B-box zinc finger Sigma70_r1_1 PF03979.14 gi|20091437|ref|NP_617512.1| - 0.19 11.8 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 Serpin PF00079.20 gi|20091438|ref|NP_617513.1| - 6.9e-16 58.5 0.1 7.5e-16 58.4 0.1 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Serpin PF00079.20 gi|20091439|ref|NP_617514.1| - 1e-87 294.8 5.4 1.3e-87 294.6 5.4 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) AIM24 PF01987.17 gi|20091441|ref|NP_617516.1| - 6.9e-36 123.9 1.7 8.8e-36 123.6 1.7 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Baseplate_J PF04865.14 gi|20091442|ref|NP_617517.1| - 0.029 13.5 0.1 0.034 13.3 0.1 1.1 1 0 0 1 1 1 0 Baseplate J-like protein CwsA PF10814.8 gi|20091442|ref|NP_617517.1| - 0.056 13.6 0.2 0.064 13.4 0.2 1.0 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA HEPN PF05168.14 gi|20091443|ref|NP_617518.1| - 1.8e-18 66.8 1.8 2.1e-18 66.6 0.8 1.6 1 1 1 2 2 2 1 HEPN domain NTP_transf_2 PF01909.23 gi|20091444|ref|NP_617519.1| - 4.5e-08 33.3 0.1 7.6e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|20091444|ref|NP_617519.1| - 2.2e-06 27.6 0.0 3.9e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 gi|20091444|ref|NP_617519.1| - 0.023 14.6 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain HTH_11 PF08279.12 gi|20091444|ref|NP_617519.1| - 0.027 14.4 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_6 PF01418.17 gi|20091444|ref|NP_617519.1| - 0.034 14.1 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Mnd1 PF03962.15 gi|20091444|ref|NP_617519.1| - 0.07 13.4 0.0 0.29 11.5 0.0 2.0 1 1 1 2 2 2 0 Mnd1 HTH domain Lyx_isomer PF07385.12 gi|20091444|ref|NP_617519.1| - 0.077 12.2 0.1 0.17 11.1 0.0 1.5 1 1 0 1 1 1 0 D-lyxose isomerase MarR_2 PF12802.7 gi|20091444|ref|NP_617519.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Endotoxin_N PF03945.14 gi|20091447|ref|NP_617522.1| - 2.9e-14 53.3 0.6 3.5e-14 53.0 0.6 1.1 1 0 0 1 1 1 1 delta endotoxin, N-terminal domain Phasin PF05597.11 gi|20091448|ref|NP_617523.1| - 4e-08 33.3 7.5 1.3e-05 25.2 5.0 2.0 1 1 1 2 2 2 2 Poly(hydroxyalcanoate) granule associated protein (phasin) GatB_Yqey PF02637.18 gi|20091448|ref|NP_617523.1| - 0.00051 19.9 4.7 0.00061 19.7 4.7 1.1 1 0 0 1 1 1 1 GatB domain DUF883 PF05957.13 gi|20091448|ref|NP_617523.1| - 0.0042 17.6 2.8 0.0042 17.6 1.6 1.6 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) BMFP PF04380.13 gi|20091448|ref|NP_617523.1| - 0.02 15.4 6.6 0.036 14.6 5.4 1.9 1 1 0 1 1 1 0 Membrane fusogenic activity UvrD-helicase PF00580.21 gi|20091448|ref|NP_617523.1| - 0.037 13.6 1.9 0.038 13.5 1.9 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain FliG_N PF14842.6 gi|20091448|ref|NP_617523.1| - 0.045 14.3 1.7 0.045 14.3 1.7 1.8 1 1 1 2 2 2 0 FliG N-terminal domain PRESAN PF09687.10 gi|20091448|ref|NP_617523.1| - 0.059 13.9 5.6 0.079 13.5 5.6 1.2 1 0 0 1 1 1 0 Plasmodium RESA N-terminal MCU PF04678.13 gi|20091448|ref|NP_617523.1| - 0.16 12.1 3.2 0.21 11.7 3.2 1.1 1 0 0 1 1 1 0 Mitochondrial calcium uniporter HSBP1 PF06825.12 gi|20091448|ref|NP_617523.1| - 0.18 11.7 5.4 4.5 7.2 0.1 2.9 3 0 0 3 3 3 0 Heat shock factor binding protein 1 FAM25 PF15825.5 gi|20091448|ref|NP_617523.1| - 0.24 11.8 3.0 0.39 11.1 3.0 1.4 1 0 0 1 1 1 0 FAM25 family RRF PF01765.19 gi|20091448|ref|NP_617523.1| - 0.27 11.2 9.2 0.23 11.4 8.1 1.4 1 1 0 1 1 1 0 Ribosome recycling factor YtxH PF12732.7 gi|20091448|ref|NP_617523.1| - 0.28 11.7 7.2 0.22 12.1 5.0 1.8 1 1 1 2 2 2 0 YtxH-like protein Lzipper-MIP1 PF14389.6 gi|20091448|ref|NP_617523.1| - 0.5 10.7 8.0 0.097 13.0 4.6 1.5 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Prefoldin PF02996.17 gi|20091448|ref|NP_617523.1| - 1.2 9.1 10.0 3.7 7.5 2.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF2680 PF10925.8 gi|20091448|ref|NP_617523.1| - 7.1 6.7 9.4 0.71 9.9 0.9 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2680) MULE PF10551.9 gi|20091449|ref|NP_617524.1| - 0.0004 20.7 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20091449|ref|NP_617524.1| - 0.07 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20091449|ref|NP_617524.1| - 0.16 12.5 1.7 0.51 10.9 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20091449|ref|NP_617524.1| - 0.21 11.3 1.3 0.58 9.9 1.3 1.7 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20091449|ref|NP_617524.1| - 0.41 10.6 3.0 2 8.4 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger DUF1269 PF06897.12 gi|20091450|ref|NP_617525.1| - 3.6e-39 133.1 0.2 1.1e-38 131.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1269) Gly-zipper_Omp PF13488.6 gi|20091450|ref|NP_617525.1| - 0.0014 18.6 3.8 0.0032 17.4 3.6 1.7 1 1 0 1 1 1 1 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|20091450|ref|NP_617525.1| - 0.0041 16.8 4.9 0.0041 16.8 4.9 1.7 2 1 0 2 2 2 1 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|20091450|ref|NP_617525.1| - 0.015 15.1 3.8 0.031 14.1 3.8 1.5 1 0 0 1 1 1 0 Glycine zipper 2TM domain Bacteriocin_IIc PF10439.9 gi|20091450|ref|NP_617525.1| - 0.049 13.7 9.2 0.095 12.8 9.2 1.4 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide SLC3A2_N PF16028.5 gi|20091450|ref|NP_617525.1| - 5.3 6.7 5.9 2.6 7.7 3.1 1.9 2 0 0 2 2 2 0 Solute carrier family 3 member 2 N-terminus GDE_C PF06202.14 gi|20091451|ref|NP_617526.1| - 4.9e-142 473.4 0.1 1.3e-141 472.0 0.0 1.6 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|20091451|ref|NP_617526.1| - 7.4e-67 225.0 0.0 1.1e-66 224.4 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|20091451|ref|NP_617526.1| - 0.0011 17.7 0.8 0.17 10.5 0.0 2.8 2 1 0 2 2 2 2 Alkaline and neutral invertase DUF608 PF04685.13 gi|20091451|ref|NP_617526.1| - 0.0016 17.7 0.7 0.0027 16.9 0.7 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Bac_rhamnosid6H PF17389.2 gi|20091451|ref|NP_617526.1| - 0.0086 15.4 0.1 0.013 14.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Abhydrolase_3 PF07859.13 gi|20091452|ref|NP_617527.1| - 1.3e-62 211.4 0.1 1.7e-62 211.0 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Chlorophyllase2 PF12740.7 gi|20091452|ref|NP_617527.1| - 0.0035 16.3 0.0 0.0052 15.7 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.21 gi|20091452|ref|NP_617527.1| - 0.005 16.3 0.2 0.019 14.5 0.2 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.12 gi|20091452|ref|NP_617527.1| - 0.01 14.5 0.0 0.66 8.6 0.0 2.2 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) PAF-AH_p_II PF03403.13 gi|20091452|ref|NP_617527.1| - 0.021 13.4 0.0 0.12 10.8 0.0 2.0 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Say1_Mug180 PF10340.9 gi|20091452|ref|NP_617527.1| - 0.057 12.3 0.0 0.083 11.7 0.0 1.2 1 0 0 1 1 1 0 Steryl acetyl hydrolase COesterase PF00135.28 gi|20091452|ref|NP_617527.1| - 0.065 12.1 0.2 0.62 8.9 0.2 2.1 1 1 0 1 1 1 0 Carboxylesterase family DUF2974 PF11187.8 gi|20091452|ref|NP_617527.1| - 0.07 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Chlorophyllase PF07224.11 gi|20091452|ref|NP_617527.1| - 0.08 11.9 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase Fe-ADH PF00465.19 gi|20091453|ref|NP_617528.1| - 2.7e-129 431.1 5.6 3.1e-129 431.0 5.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|20091453|ref|NP_617528.1| - 9.5e-18 64.8 4.8 8.7e-10 38.7 0.0 2.2 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase TetR_C_25 PF17933.1 gi|20091453|ref|NP_617528.1| - 0.021 15.1 0.0 0.066 13.5 0.0 1.8 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peripla_BP_6 PF13458.6 gi|20091453|ref|NP_617528.1| - 0.044 13.4 0.2 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein DUF1508 PF07411.12 gi|20091453|ref|NP_617528.1| - 0.49 10.3 2.9 9.7 6.1 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1508) LOR PF04525.12 gi|20091454|ref|NP_617529.1| - 2.4e-19 69.7 0.2 3.3e-19 69.2 0.2 1.3 1 0 0 1 1 1 1 LURP-one-related PTS_2-RNA PF01885.16 gi|20091454|ref|NP_617529.1| - 0.085 12.9 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 RNA 2'-phosphotransferase, Tpt1 / KptA family SBF PF01758.16 gi|20091455|ref|NP_617530.1| - 2.8e-12 46.7 23.2 2.8e-12 46.7 23.2 2.3 1 1 2 3 3 3 1 Sodium Bile acid symporter family MASE3 PF17159.4 gi|20091455|ref|NP_617530.1| - 0.73 9.4 22.8 0.045 13.4 17.1 1.9 2 1 0 2 2 2 0 Membrane-associated sensor domain DUF1467 PF07330.12 gi|20091455|ref|NP_617530.1| - 2.3 8.2 10.4 0.46 10.5 0.4 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF1467) Na_H_Exchanger PF00999.21 gi|20091456|ref|NP_617531.1| - 7.3e-28 97.4 21.1 8.7e-28 97.2 21.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MULE PF10551.9 gi|20091457|ref|NP_617532.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091457|ref|NP_617532.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091457|ref|NP_617532.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091457|ref|NP_617532.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091457|ref|NP_617532.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091457|ref|NP_617532.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091457|ref|NP_617532.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091457|ref|NP_617532.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091457|ref|NP_617532.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20091457|ref|NP_617532.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091457|ref|NP_617532.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger AI-2E_transport PF01594.16 gi|20091458|ref|NP_617533.1| - 3.5e-45 154.6 42.6 3.9e-45 154.4 42.6 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF1269 PF06897.12 gi|20091459|ref|NP_617534.1| - 2.1e-13 50.4 2.2 3.8e-13 49.6 2.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) RcsC PF09456.10 gi|20091460|ref|NP_617535.1| - 0.18 11.8 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 RcsC Alpha-Beta-Loop (ABL) DUF4386 PF14329.6 gi|20091461|ref|NP_617536.1| - 0.0018 18.2 6.1 0.0018 18.2 6.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4386) Caleosin PF05042.13 gi|20091461|ref|NP_617536.1| - 0.089 12.7 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Caleosin related protein DUF1269 PF06897.12 gi|20091462|ref|NP_617537.1| - 2.3e-09 37.4 1.5 4.1e-09 36.6 1.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) DUF456 PF04306.13 gi|20091462|ref|NP_617537.1| - 0.025 14.9 0.2 2.5 8.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF456) DUF1269 PF06897.12 gi|20091463|ref|NP_617538.1| - 2.5e-09 37.3 3.4 3.9e-09 36.7 3.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) DUF456 PF04306.13 gi|20091463|ref|NP_617538.1| - 0.0031 17.8 1.2 1.7 8.9 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF456) DUF1129 PF06570.11 gi|20091464|ref|NP_617539.1| - 0.017 14.6 0.2 0.022 14.2 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) ATP-synt_S1 PF05827.12 gi|20091464|ref|NP_617539.1| - 1.4 8.7 4.0 14 5.5 0.9 2.2 1 1 1 2 2 2 0 Vacuolar ATP synthase subunit S1 (ATP6S1) MS_channel PF00924.18 gi|20091465|ref|NP_617540.1| - 3.7e-31 108.3 0.6 4e-31 108.2 0.6 1.0 1 0 0 1 1 1 1 Mechanosensitive ion channel PepSY_TM PF03929.16 gi|20091465|ref|NP_617540.1| - 0.058 13.1 0.1 0.063 12.9 0.1 1.1 1 0 0 1 1 1 0 PepSY-associated TM region DUF1269 PF06897.12 gi|20091467|ref|NP_617542.1| - 3.1e-36 123.7 0.5 4.5e-36 123.1 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Gly-zipper_Omp PF13488.6 gi|20091467|ref|NP_617542.1| - 0.00017 21.5 3.6 0.00027 20.9 3.6 1.3 1 0 0 1 1 1 1 Glycine zipper Bacteriocin_IIc PF10439.9 gi|20091467|ref|NP_617542.1| - 0.033 14.3 5.6 0.06 13.5 5.6 1.4 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_YMGG PF13441.6 gi|20091467|ref|NP_617542.1| - 0.044 13.5 5.3 0.2 11.4 5.4 1.9 1 1 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 gi|20091467|ref|NP_617542.1| - 0.17 11.7 5.3 3.8 7.4 0.2 2.2 2 0 0 2 2 2 0 Glycine-zipper domain Sdh5 PF03937.16 gi|20091467|ref|NP_617542.1| - 0.19 11.7 0.2 0.58 10.2 0.0 1.8 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Sulfatase PF00884.23 gi|20091468|ref|NP_617543.1| - 1.4e-90 303.9 0.0 1.7e-90 303.5 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|20091468|ref|NP_617543.1| - 1.7e-06 27.9 0.1 0.00058 19.6 0.0 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|20091468|ref|NP_617543.1| - 0.26 9.8 0.0 0.37 9.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) AI-2E_transport PF01594.16 gi|20091469|ref|NP_617544.1| - 5.4e-47 160.5 44.8 6.1e-47 160.4 44.8 1.0 1 0 0 1 1 1 1 AI-2E family transporter Radical_SAM PF04055.21 gi|20091470|ref|NP_617545.1| - 3.5e-12 47.0 0.0 6.9e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.15 gi|20091470|ref|NP_617545.1| - 1.1e-10 41.2 5.5 1.1e-10 41.2 5.5 1.8 2 0 0 2 2 2 1 SEC-C motif SPASM PF13186.6 gi|20091470|ref|NP_617545.1| - 5.4e-08 33.2 0.2 1.3e-07 32.0 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|20091470|ref|NP_617545.1| - 3.7e-05 24.0 0.0 8.1e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20091470|ref|NP_617545.1| - 0.0026 17.9 0.0 0.0048 17.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Sulfatase PF00884.23 gi|20091471|ref|NP_617546.1| - 4.1e-62 210.3 0.0 6.6e-62 209.7 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Sulfatase_C PF14707.6 gi|20091471|ref|NP_617546.1| - 8.6e-07 29.7 0.0 1.9e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Phosphodiest PF01663.22 gi|20091471|ref|NP_617546.1| - 0.0022 17.6 0.0 0.046 13.3 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase HAD PF12710.7 gi|20091472|ref|NP_617547.1| - 2.8e-13 50.7 0.1 1.6e-12 48.3 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cohesin_HEAT PF12765.7 gi|20091472|ref|NP_617547.1| - 0.043 14.1 0.0 0.31 11.4 0.0 2.2 2 0 0 2 2 2 0 HEAT repeat associated with sister chromatid cohesion GFRP PF06399.13 gi|20091472|ref|NP_617547.1| - 0.16 11.9 0.0 4.9 7.1 0.0 2.3 2 0 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) Sulfatase PF00884.23 gi|20091473|ref|NP_617548.1| - 8.6e-83 278.3 0.1 1.1e-82 277.9 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|20091473|ref|NP_617548.1| - 0.0014 18.3 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4994 PF16385.5 gi|20091473|ref|NP_617548.1| - 0.0066 16.3 0.1 0.017 15.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF4976 PF16347.5 gi|20091473|ref|NP_617548.1| - 0.0077 16.5 0.1 0.027 14.7 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4976) Laminin_G_3 PF13385.6 gi|20091473|ref|NP_617548.1| - 0.0094 16.1 0.0 0.025 14.7 0.0 1.7 1 1 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily DUF229 PF02995.17 gi|20091473|ref|NP_617548.1| - 0.052 12.2 0.0 0.074 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) UPF0114 PF03350.16 gi|20091474|ref|NP_617549.1| - 6.3e-25 87.7 4.7 9.4e-25 87.1 4.7 1.3 1 0 0 1 1 1 1 Uncharacterized protein family, UPF0114 CPBP PF02517.16 gi|20091475|ref|NP_617550.1| - 3.4e-16 59.4 6.9 3.4e-16 59.4 6.9 2.1 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease Peptidase_M20 PF01546.28 gi|20091476|ref|NP_617551.1| - 1.7e-09 37.7 0.0 2.8e-09 37.0 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|20091476|ref|NP_617551.1| - 0.0023 17.8 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|20091476|ref|NP_617551.1| - 0.0067 15.5 0.0 0.33 9.9 0.0 2.7 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase UvrA_DNA-bind PF17755.1 gi|20091477|ref|NP_617552.1| - 0.037 14.4 0.1 0.049 14.0 0.1 1.2 1 0 0 1 1 1 0 UvrA DNA-binding domain GCIP PF13324.6 gi|20091477|ref|NP_617552.1| - 0.07 12.7 0.3 0.079 12.6 0.3 1.1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting NUDIX PF00293.28 gi|20091478|ref|NP_617553.1| - 1.7e-13 50.7 0.0 2.2e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain UPF0228 PF05727.11 gi|20091479|ref|NP_617554.1| - 1.2e-86 286.8 20.4 5.9e-45 152.1 5.9 3.2 1 1 2 3 3 3 2 Uncharacterised protein family (UPF0228) PASTA PF03793.19 gi|20091479|ref|NP_617554.1| - 0.018 14.9 0.2 11 5.9 0.0 2.9 2 0 0 2 2 2 0 PASTA domain Gp138_N PF18352.1 gi|20091479|ref|NP_617554.1| - 0.069 13.2 0.0 2.3 8.3 0.0 2.5 2 0 0 2 2 2 0 Phage protein Gp138 N-terminal domain ATP-grasp_2 PF08442.10 gi|20091479|ref|NP_617554.1| - 0.074 12.6 0.3 12 5.4 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp domain HTH_19 PF12844.7 gi|20091479|ref|NP_617554.1| - 0.12 12.4 2.6 22 5.1 0.5 4.2 2 1 1 3 3 3 0 Helix-turn-helix domain Phage_TAC_10 PF10963.8 gi|20091479|ref|NP_617554.1| - 1.9 8.7 11.2 3.2 8.0 0.2 4.5 4 1 1 5 5 5 0 Phage tail assembly chaperone SFTA2 PF15210.6 gi|20091481|ref|NP_617556.1| - 0.00097 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Surfactant-associated protein 2 SL4P PF17618.2 gi|20091481|ref|NP_617556.1| - 0.032 14.3 1.1 0.39 10.8 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized Strongylid L4 protein DDE_Tnp_IS1 PF03400.13 gi|20091482|ref|NP_617557.1| - 1.1e-07 32.3 0.1 0.00033 21.0 0.1 2.1 2 0 0 2 2 2 2 IS1 transposase MEDS PF14417.6 gi|20091483|ref|NP_617558.1| - 6.4e-29 100.9 0.0 9e-29 100.4 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Acyl_transf_3 PF01757.22 gi|20091484|ref|NP_617559.1| - 3.6e-19 69.0 21.2 4.3e-19 68.8 21.2 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF5083 PF16890.5 gi|20091484|ref|NP_617559.1| - 0.00057 19.6 0.5 0.00088 19.0 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5083) Acyl_transf_3 PF01757.22 gi|20091485|ref|NP_617560.1| - 0.0043 16.1 7.6 0.0058 15.7 7.6 1.2 1 0 0 1 1 1 1 Acyltransferase family DUF2207 PF09972.9 gi|20091486|ref|NP_617561.1| - 4.5e-113 378.6 3.8 6.2e-113 378.2 3.8 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) CoA_binding_3 PF13727.6 gi|20091486|ref|NP_617561.1| - 0.0042 17.1 0.4 0.0093 16.0 0.4 1.5 1 0 0 1 1 1 1 CoA-binding domain DUF4064 PF13273.6 gi|20091486|ref|NP_617561.1| - 0.13 12.6 6.9 0.37 11.1 2.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) LemA PF04011.12 gi|20091487|ref|NP_617562.1| - 6e-64 214.4 6.5 7.4e-64 214.1 6.5 1.1 1 0 0 1 1 1 1 LemA family AI-2E_transport PF01594.16 gi|20091487|ref|NP_617562.1| - 0.075 12.2 3.5 0.04 13.1 1.1 1.7 1 1 1 2 2 2 0 AI-2E family transporter PGM_PMM_I PF02878.16 gi|20091488|ref|NP_617563.1| - 9e-41 138.8 0.2 3.3e-40 137.0 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|20091488|ref|NP_617563.1| - 2.8e-27 95.3 0.0 8.5e-27 93.8 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|20091488|ref|NP_617563.1| - 6.8e-27 93.9 0.0 1.3e-26 93.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|20091488|ref|NP_617563.1| - 5.3e-14 52.1 0.0 2.3e-13 50.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DeoC PF01791.9 gi|20091489|ref|NP_617564.1| - 9.4e-54 182.5 0.0 1.2e-53 182.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PPDK_N PF01326.19 gi|20091490|ref|NP_617565.1| - 1.4e-115 386.1 0.0 1.9e-115 385.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|20091490|ref|NP_617565.1| - 2e-59 201.1 0.0 3.5e-59 200.3 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|20091490|ref|NP_617565.1| - 1.2e-25 89.0 0.6 3.5e-25 87.5 0.6 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DRE2_N PF16803.5 gi|20091490|ref|NP_617565.1| - 0.074 13.3 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus H_kinase_N PF12282.8 gi|20091490|ref|NP_617565.1| - 0.096 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Signal transduction histidine kinase PGK PF00162.19 gi|20091492|ref|NP_617567.1| - 5.2e-107 358.1 0.1 5.9e-107 357.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF4277 PF14104.6 gi|20091493|ref|NP_617568.1| - 3.2e-43 146.5 0.0 6.3e-43 145.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20091493|ref|NP_617568.1| - 6.7e-19 68.4 2.0 3.8e-18 65.9 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.11 gi|20091493|ref|NP_617568.1| - 0.0092 16.5 2.1 0.4 11.2 0.6 2.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1410) Ntox15 PF15604.6 gi|20091493|ref|NP_617568.1| - 4.6 7.3 6.5 1 9.5 2.1 2.0 1 1 1 2 2 2 0 Novel toxin 15 iPGM_N PF06415.13 gi|20091494|ref|NP_617569.1| - 4.6e-86 287.7 0.0 6.6e-86 287.2 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|20091494|ref|NP_617569.1| - 3.3e-81 272.3 0.0 3.8e-81 272.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|20091494|ref|NP_617569.1| - 5.7e-06 26.2 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|20091494|ref|NP_617569.1| - 0.0035 17.5 0.2 0.0075 16.4 0.2 1.5 1 0 0 1 1 1 1 PglZ domain Sulfatase PF00884.23 gi|20091494|ref|NP_617569.1| - 0.0061 16.0 0.0 0.02 14.3 0.0 1.9 3 0 0 3 3 3 1 Sulfatase DEAD PF00270.29 gi|20091495|ref|NP_617570.1| - 2.9e-24 85.8 0.0 6.2e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|20091495|ref|NP_617570.1| - 3.4e-22 79.0 0.0 4.1e-21 75.5 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|20091495|ref|NP_617570.1| - 8.2e-14 51.9 0.0 5.9e-13 49.1 0.0 2.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|20091495|ref|NP_617570.1| - 1.8e-05 24.8 0.0 3.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit MC1 PF05854.11 gi|20091495|ref|NP_617570.1| - 0.04 14.2 0.2 0.11 12.8 0.2 1.8 1 0 0 1 1 1 0 Non-histone chromosomal protein MC1 UPF0239 PF06783.11 gi|20091495|ref|NP_617570.1| - 0.11 12.7 1.0 0.19 11.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0239) NosD PF05048.13 gi|20091496|ref|NP_617571.1| - 3.6e-05 23.2 6.0 5.8e-05 22.5 5.9 1.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20091496|ref|NP_617571.1| - 3.9e-05 23.5 10.2 6.5e-05 22.8 9.8 1.6 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.11 gi|20091496|ref|NP_617571.1| - 0.011 15.1 0.5 0.57 9.5 0.5 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1565) Pectinesterase PF01095.19 gi|20091496|ref|NP_617571.1| - 0.064 12.0 0.2 0.11 11.2 0.1 1.4 2 0 0 2 2 2 0 Pectinesterase Pyrophosphatase PF00719.19 gi|161484935|ref|NP_617572.2| - 3.5e-53 179.7 0.0 4e-53 179.5 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase OKR_DC_1_N PF03709.15 gi|161484935|ref|NP_617572.2| - 0.089 13.1 0.0 0.18 12.1 0.0 1.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Pyr_redox_2 PF07992.14 gi|20091498|ref|NP_617573.1| - 1.9e-17 63.4 1.5 3.1e-06 26.7 0.1 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|20091498|ref|NP_617573.1| - 8e-15 54.8 2.2 1.2e-05 24.6 0.4 3.1 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.22 gi|20091498|ref|NP_617573.1| - 7.9e-14 51.5 2.2 8.5e-05 21.8 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|20091498|ref|NP_617573.1| - 9.5e-11 41.0 0.1 4.9e-07 28.8 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|20091498|ref|NP_617573.1| - 6.1e-08 32.6 0.5 9.5e-05 22.1 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|20091498|ref|NP_617573.1| - 7.3e-07 28.6 0.1 0.0018 17.4 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|20091498|ref|NP_617573.1| - 1.6e-05 24.2 0.8 5.8e-05 22.4 0.2 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|20091498|ref|NP_617573.1| - 4.3e-05 23.7 0.3 0.00016 21.9 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|20091498|ref|NP_617573.1| - 4.4e-05 22.9 0.1 0.0038 16.5 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|20091498|ref|NP_617573.1| - 0.00027 20.3 0.7 0.0014 17.9 0.6 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|20091498|ref|NP_617573.1| - 0.006 16.6 0.0 0.75 9.8 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|20091498|ref|NP_617573.1| - 0.026 13.9 0.8 0.2 10.9 0.3 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase HSDR_N PF04313.14 gi|20091499|ref|NP_617574.1| - 0.086 12.8 0.0 5.3 7.0 0.0 2.0 1 1 1 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) DDE_Tnp_1 PF01609.21 gi|20091500|ref|NP_617575.1| - 2.4e-21 76.4 0.3 2.4e-21 76.4 0.3 2.0 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|20091501|ref|NP_617576.1| - 2.8e-28 98.6 4.2 7.4e-28 97.3 2.8 2.3 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20091501|ref|NP_617576.1| - 1.8e-19 70.3 1.5 5.2e-19 68.7 1.5 1.9 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20091501|ref|NP_617576.1| - 5.2e-15 55.2 0.0 1.3e-14 53.9 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) RE_XamI PF09572.10 gi|20091501|ref|NP_617576.1| - 0.037 13.7 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 XamI restriction endonuclease AhpC-TSA PF00578.21 gi|20091501|ref|NP_617576.1| - 0.062 13.2 0.4 0.13 12.2 0.4 1.5 1 0 0 1 1 1 0 AhpC/TSA family DDE_Tnp_1_2 PF13586.6 gi|20091501|ref|NP_617576.1| - 0.082 13.3 0.2 9.5 6.7 0.0 3.0 3 0 0 3 3 3 0 Transposase DDE domain GIIM PF08388.11 gi|20091502|ref|NP_617577.1| - 3.2e-27 94.4 10.6 3.2e-27 94.4 10.6 1.7 2 0 0 2 2 2 1 Group II intron, maturase-specific domain RVT_1 PF00078.27 gi|20091502|ref|NP_617577.1| - 2e-20 73.3 0.0 4e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) S_4TM PF18159.1 gi|20091503|ref|NP_617578.1| - 0.58 9.4 6.7 1 8.6 0.2 2.1 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain UbiA PF01040.18 gi|20091504|ref|NP_617579.1| - 1.3e-10 41.0 2.4 1.6e-10 40.7 2.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Pribosyltran PF00156.27 gi|20091505|ref|NP_617580.1| - 7.3e-27 93.8 0.1 9.6e-27 93.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|20091505|ref|NP_617580.1| - 0.0064 16.0 0.1 0.0093 15.4 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|20091505|ref|NP_617580.1| - 0.0071 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|20091505|ref|NP_617580.1| - 0.021 14.9 0.1 0.029 14.4 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Unstab_antitox PF09720.10 gi|20091505|ref|NP_617580.1| - 0.064 13.3 0.6 0.15 12.2 0.6 1.6 1 0 0 1 1 1 0 Putative addiction module component adh_short PF00106.25 gi|20091506|ref|NP_617581.1| - 1.1e-59 201.2 0.3 1.3e-59 201.0 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|20091506|ref|NP_617581.1| - 2.4e-47 161.4 0.2 5.2e-47 160.4 0.2 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|20091506|ref|NP_617581.1| - 8.4e-13 48.6 0.1 1.2e-12 48.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|20091506|ref|NP_617581.1| - 9.5e-05 22.0 0.1 0.00012 21.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|20091506|ref|NP_617581.1| - 0.0039 16.4 0.1 0.0048 16.1 0.1 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein UPF0254 PF06787.11 gi|20091506|ref|NP_617581.1| - 0.075 12.8 0.8 0.42 10.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) 3Beta_HSD PF01073.19 gi|20091506|ref|NP_617581.1| - 0.08 11.9 0.5 0.11 11.5 0.5 1.3 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family BAF250_C PF12031.8 gi|20091506|ref|NP_617581.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 SWI/SNF-like complex subunit BAF250/Osa NAD_binding_7 PF13241.6 gi|20091506|ref|NP_617581.1| - 0.11 12.9 0.2 0.17 12.3 0.2 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 gi|20091507|ref|NP_617582.1| - 1.1e-60 204.5 0.0 1.5e-60 204.0 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|20091507|ref|NP_617582.1| - 2.3e-51 174.6 0.0 1.3e-50 172.1 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|20091507|ref|NP_617582.1| - 3.3e-15 56.5 0.0 4.3e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|20091507|ref|NP_617582.1| - 5.5e-05 22.8 0.0 6.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|20091507|ref|NP_617582.1| - 0.0027 16.9 0.1 0.0029 16.8 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|20091507|ref|NP_617582.1| - 0.013 14.6 0.2 0.016 14.2 0.2 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|20091507|ref|NP_617582.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase zf-UBP PF02148.19 gi|20091508|ref|NP_617583.1| - 3.4e-14 52.9 9.6 4.4e-14 52.6 9.6 1.2 1 0 0 1 1 1 1 Zn-finger in ubiquitin-hydrolases and other protein zf-UBP_var PF17807.1 gi|20091508|ref|NP_617583.1| - 0.00056 19.6 3.2 0.00081 19.1 3.2 1.2 1 0 0 1 1 1 1 Variant UBP zinc finger DUF1670 PF07900.11 gi|20091509|ref|NP_617584.1| - 7.1e-99 329.6 4.1 8.3e-99 329.4 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20091509|ref|NP_617584.1| - 1.6e-05 24.5 0.0 0.16 11.8 0.0 4.0 3 1 1 4 4 4 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20091509|ref|NP_617584.1| - 9.1e-05 22.1 0.6 2.9 7.6 0.1 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_17 PF12728.7 gi|20091509|ref|NP_617584.1| - 0.00043 20.4 0.1 0.92 9.7 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|20091509|ref|NP_617584.1| - 0.0007 19.4 0.3 0.073 13.0 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|20091509|ref|NP_617584.1| - 0.0007 19.1 0.0 10 5.8 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|20091509|ref|NP_617584.1| - 0.001 19.0 0.2 0.21 11.6 0.0 3.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20091509|ref|NP_617584.1| - 0.0017 18.2 0.3 0.017 15.0 0.2 2.5 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|20091509|ref|NP_617584.1| - 0.0058 16.6 0.1 7.8 6.6 0.0 3.1 2 1 1 3 3 3 1 Winged helix-turn helix Phage_terminase PF10668.9 gi|20091509|ref|NP_617584.1| - 0.0071 16.3 0.3 2.6 8.1 0.1 2.5 2 0 0 2 2 2 1 Phage terminase small subunit HTH_11 PF08279.12 gi|20091509|ref|NP_617584.1| - 0.0097 15.8 0.4 5.7 7.0 0.1 2.9 3 0 0 3 3 3 1 HTH domain Fe_dep_repress PF01325.19 gi|20091509|ref|NP_617584.1| - 0.018 15.2 0.9 7.1 6.9 0.3 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|20091509|ref|NP_617584.1| - 0.056 13.0 0.3 2.5 7.7 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 GerE PF00196.19 gi|20091509|ref|NP_617584.1| - 0.085 12.4 0.1 10 5.7 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_Tnp_4 PF13613.6 gi|20091509|ref|NP_617584.1| - 0.12 12.1 0.0 0.34 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1670 PF07900.11 gi|20091510|ref|NP_617585.1| - 8e-88 293.5 0.2 9.8e-88 293.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20091510|ref|NP_617585.1| - 3.6e-06 26.8 0.1 0.00079 19.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|20091510|ref|NP_617585.1| - 0.0011 19.1 0.1 0.18 12.0 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20091510|ref|NP_617585.1| - 0.0012 18.4 0.1 0.0075 15.8 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|20091510|ref|NP_617585.1| - 0.0015 18.3 0.0 6.2 6.8 0.0 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|20091510|ref|NP_617585.1| - 0.0021 18.0 0.6 0.0084 16.0 0.1 2.2 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|20091510|ref|NP_617585.1| - 0.0026 17.7 0.1 0.85 9.7 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|20091510|ref|NP_617585.1| - 0.0094 15.9 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20091510|ref|NP_617585.1| - 0.011 15.6 0.4 1.9 8.5 0.1 3.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|20091510|ref|NP_617585.1| - 0.02 14.6 0.7 0.091 12.5 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091510|ref|NP_617585.1| - 0.044 13.5 1.5 10 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.22 gi|20091510|ref|NP_617585.1| - 0.058 13.3 0.2 0.18 11.7 0.1 1.8 2 0 0 2 2 2 0 MarR family TENA_THI-4 PF03070.16 gi|20091510|ref|NP_617585.1| - 0.063 13.1 0.2 1.9 8.2 0.0 2.5 3 0 0 3 3 3 0 TENA/THI-4/PQQC family HTH_20 PF12840.7 gi|20091510|ref|NP_617585.1| - 0.068 13.2 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20091510|ref|NP_617585.1| - 0.082 12.8 0.0 4 7.4 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|20091510|ref|NP_617585.1| - 0.15 11.9 0.1 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family ABC2_membrane PF01061.24 gi|20091511|ref|NP_617586.1| - 3.2e-23 82.3 26.7 3.2e-23 82.3 26.7 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20091511|ref|NP_617586.1| - 5.8e-10 38.8 32.8 5.8e-10 38.8 32.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|20091512|ref|NP_617587.1| - 2.8e-33 115.3 0.0 5.2e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20091512|ref|NP_617587.1| - 1.5e-12 48.0 0.3 6.6e-08 32.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|20091512|ref|NP_617587.1| - 5.5e-11 43.0 0.0 2e-10 41.2 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|20091512|ref|NP_617587.1| - 6.8e-05 23.5 0.2 0.00015 22.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20091512|ref|NP_617587.1| - 0.00011 21.8 0.0 0.00026 20.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|20091512|ref|NP_617587.1| - 0.00024 20.9 0.0 0.28 10.9 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20091512|ref|NP_617587.1| - 0.00049 20.0 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|20091512|ref|NP_617587.1| - 0.0042 16.6 0.0 0.031 13.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|20091512|ref|NP_617587.1| - 0.0078 16.3 0.4 0.15 12.2 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase Rad17 PF03215.15 gi|20091512|ref|NP_617587.1| - 0.0085 16.0 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|20091512|ref|NP_617587.1| - 0.01 16.1 0.1 0.028 14.7 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20091512|ref|NP_617587.1| - 0.024 14.1 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|20091512|ref|NP_617587.1| - 0.064 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|20091512|ref|NP_617587.1| - 0.091 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|20091512|ref|NP_617587.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PEPcase_2 PF14010.6 gi|229017561|ref|NP_617588.2| - 6.7e-117 391.0 0.0 7.7e-117 390.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase TTRAP PF14203.6 gi|229017561|ref|NP_617588.2| - 0.7 9.9 2.3 4.5 7.3 0.1 3.2 4 0 0 4 4 4 0 Putative tranposon-transfer assisting protein Abhydrolase_1 PF00561.20 gi|20091514|ref|NP_617589.1| - 8.2e-24 84.6 0.0 4e-19 69.3 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|20091514|ref|NP_617589.1| - 6.2e-17 61.7 0.0 1.4e-13 50.7 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|20091514|ref|NP_617589.1| - 6.9e-09 36.6 0.0 3.5e-08 34.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|20091514|ref|NP_617589.1| - 0.0047 15.7 0.0 0.0079 14.9 0.0 1.3 1 0 0 1 1 1 1 Ndr family Peptidase_S9 PF00326.21 gi|20091514|ref|NP_617589.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Prolyl oligopeptidase family FSH1 PF03959.13 gi|20091514|ref|NP_617589.1| - 0.013 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) AXE1 PF05448.12 gi|20091514|ref|NP_617589.1| - 0.024 13.3 0.0 0.96 8.1 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 gi|20091514|ref|NP_617589.1| - 0.061 13.4 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.20 gi|20091514|ref|NP_617589.1| - 0.064 12.9 0.0 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Putative esterase Peptidase_U32 PF01136.19 gi|20091515|ref|NP_617590.1| - 6.2e-94 313.5 0.1 4e-78 261.8 0.0 2.4 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|20091515|ref|NP_617590.1| - 1.7e-22 80.1 0.7 5.6e-22 78.4 0.7 2.0 1 0 0 1 1 1 1 Collagenase GTP_EFTU_D4 PF14578.6 gi|20091515|ref|NP_617590.1| - 0.0018 18.2 0.3 0.0062 16.4 0.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 OrfB_Zn_ribbon PF07282.11 gi|20091516|ref|NP_617591.1| - 2e-25 88.5 0.2 5.7e-25 87.0 0.2 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|20091516|ref|NP_617591.1| - 0.0041 17.1 0.1 0.0096 15.9 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_17 PF17120.5 gi|20091516|ref|NP_617591.1| - 0.013 15.1 2.5 0.032 13.9 1.4 2.0 2 0 0 2 2 2 0 Zinc-ribbon, C4HC2 type zf-ribbon_3 PF13248.6 gi|20091516|ref|NP_617591.1| - 0.59 9.6 4.3 0.99 8.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|20091516|ref|NP_617591.1| - 2.1 8.5 6.7 0.63 10.2 1.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MatE PF01554.18 gi|20091518|ref|NP_617593.1| - 1.7e-41 141.5 29.8 3.7e-22 78.7 7.0 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|20091518|ref|NP_617593.1| - 1.1e-08 35.3 27.0 9.6e-08 32.2 14.4 4.5 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF2156 PF09924.9 gi|20091519|ref|NP_617594.1| - 3.3e-90 302.1 0.0 4.4e-90 301.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) LPG_synthase_TM PF03706.13 gi|20091519|ref|NP_617594.1| - 8e-12 45.3 25.5 8e-12 45.3 25.5 3.0 2 1 1 3 3 3 1 Lysylphosphatidylglycerol synthase TM region Holin_BlyA PF05102.12 gi|20091519|ref|NP_617594.1| - 7.8 6.5 6.4 2.2 8.3 1.1 2.7 2 0 0 2 2 2 0 holin, BlyA family GATase PF00117.28 gi|20091520|ref|NP_617595.1| - 3e-22 79.3 0.0 4.6e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|20091520|ref|NP_617595.1| - 1.4e-06 28.3 0.0 1.4e-05 24.9 0.0 2.1 2 0 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|20091520|ref|NP_617595.1| - 1.6e-05 24.6 0.0 2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|20091520|ref|NP_617595.1| - 4.8e-05 23.2 0.0 8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family HTS PF04204.16 gi|20091520|ref|NP_617595.1| - 7.4e-05 21.8 0.0 9.8e-05 21.4 0.0 1.1 1 0 0 1 1 1 1 Homoserine O-succinyltransferase ICMT PF04140.14 gi|20091522|ref|NP_617597.1| - 9.8e-16 58.0 1.4 9.8e-16 58.0 1.4 2.1 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 gi|20091522|ref|NP_617597.1| - 8.3e-11 42.2 3.1 8.8e-11 42.1 0.4 2.1 2 0 0 2 2 2 1 Phospholipid methyltransferase NnrU PF07298.11 gi|20091522|ref|NP_617597.1| - 0.026 14.1 6.4 0.1 12.1 6.1 2.0 1 1 0 1 1 1 0 NnrU protein DUF1295 PF06966.12 gi|20091522|ref|NP_617597.1| - 0.036 13.6 2.9 0.082 12.4 2.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1295) DUF3007 PF11460.8 gi|20091522|ref|NP_617597.1| - 0.14 12.5 1.9 0.37 11.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) DUF1129 PF06570.11 gi|20091522|ref|NP_617597.1| - 0.31 10.5 9.9 0.078 12.5 1.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) Phtf-FEM1B_bdg PF12129.8 gi|20091522|ref|NP_617597.1| - 0.39 10.5 5.4 0.17 11.7 1.1 2.0 1 1 1 2 2 2 0 Male germ-cell putative homeodomain transcription factor DUF3149 PF11346.8 gi|20091522|ref|NP_617597.1| - 0.46 10.1 0.1 0.46 10.1 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3149) Flavodoxin_1 PF00258.25 gi|20091523|ref|NP_617598.1| - 1.8e-29 102.8 0.1 2.1e-29 102.6 0.1 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|20091523|ref|NP_617598.1| - 1.5e-06 28.0 0.0 2.1e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|20091523|ref|NP_617598.1| - 2.1e-06 28.0 0.0 3.1e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|20091523|ref|NP_617598.1| - 0.0055 16.5 0.0 0.015 15.1 0.0 1.6 2 0 0 2 2 2 1 NADPH-dependent FMN reductase DUF2023 PF09633.10 gi|20091524|ref|NP_617599.1| - 1.1e-42 144.2 1.1 1.4e-42 143.9 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2023) PLD_C PF12357.8 gi|20091524|ref|NP_617599.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Phospholipase D C terminal DUF2833 PF11090.8 gi|20091524|ref|NP_617599.1| - 0.2 12.1 1.4 15 6.1 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2833) DUF772 PF05598.11 gi|20091525|ref|NP_617600.1| - 7.1e-21 74.0 0.1 4.5e-20 71.4 0.0 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|20091525|ref|NP_617600.1| - 2.1e-11 43.9 0.4 3.3e-11 43.2 0.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|20091525|ref|NP_617600.1| - 0.0025 17.8 0.1 0.01 15.9 0.0 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|20091525|ref|NP_617600.1| - 0.033 13.9 0.0 0.053 13.2 0.0 1.4 1 1 0 1 1 1 0 DDE superfamily endonuclease DDE_5 PF13546.6 gi|20091526|ref|NP_617601.1| - 1.7e-08 34.1 0.0 1.9e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|20091527|ref|NP_617602.1| - 0.0013 18.5 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF2929 PF11151.8 gi|20091528|ref|NP_617603.1| - 0.4 11.0 6.2 6.1 7.2 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) DUF5455 PF17537.2 gi|20091528|ref|NP_617603.1| - 0.49 10.8 6.8 5.3 7.5 0.4 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5455) Spore_YhaL PF14147.6 gi|20091528|ref|NP_617603.1| - 0.93 9.2 2.4 4.1 7.2 0.2 2.2 2 0 0 2 2 2 0 Sporulation protein YhaL Kelch_4 PF13418.6 gi|20091529|ref|NP_617604.1| - 5.9e-05 23.0 0.0 0.26 11.3 0.0 4.9 5 1 1 6 6 6 1 Galactose oxidase, central domain DUF4934 PF16288.5 gi|20091529|ref|NP_617604.1| - 0.0072 16.2 0.5 0.86 9.6 0.0 3.1 4 1 0 4 4 4 1 Domain of unknown function (DUF4934) Kelch_3 PF13415.6 gi|20091529|ref|NP_617604.1| - 0.016 15.5 0.9 23 5.4 0.0 4.0 5 0 0 5 5 5 0 Galactose oxidase, central domain Kelch_6 PF13964.6 gi|20091529|ref|NP_617604.1| - 0.063 13.6 1.1 93 3.5 0.0 4.8 6 0 0 6 6 6 0 Kelch motif PKD PF00801.20 gi|20091530|ref|NP_617605.1| - 7e-28 96.3 19.8 6e-12 45.2 3.4 3.5 3 0 0 3 3 3 3 PKD domain DPPIV_N PF00930.21 gi|20091530|ref|NP_617605.1| - 1.5e-10 40.4 20.0 8.7e-05 21.4 1.5 6.4 4 2 1 6 6 6 5 Dipeptidyl peptidase IV (DPP IV) N-terminal region PKD_3 PF16820.5 gi|20091530|ref|NP_617605.1| - 0.0027 17.4 4.1 0.96 9.2 0.1 3.6 3 0 0 3 3 3 2 PKD-like domain DUF2606 PF10794.9 gi|20091530|ref|NP_617605.1| - 0.049 13.4 6.1 23 4.7 0.0 4.8 5 1 0 5 5 5 0 Protein of unknown function (DUF2606) Kelch_3 PF13415.6 gi|20091530|ref|NP_617605.1| - 0.76 10.1 17.5 25 5.3 0.0 8.2 11 0 0 11 11 11 0 Galactose oxidase, central domain DUF5011 PF16403.5 gi|20091530|ref|NP_617605.1| - 8 6.7 10.8 3.9 7.7 0.2 3.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) PKD PF00801.20 gi|20091531|ref|NP_617606.1| - 5.7e-13 48.5 1.4 8.9e-13 47.9 1.4 1.3 1 0 0 1 1 1 1 PKD domain PKD_3 PF16820.5 gi|20091531|ref|NP_617606.1| - 0.096 12.4 0.2 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 PKD-like domain Yip1 PF04893.17 gi|20091532|ref|NP_617607.1| - 7.2e-11 42.1 21.0 9.1e-11 41.8 20.7 1.3 1 1 0 1 1 1 1 Yip1 domain DUF3795 PF12675.7 gi|20091533|ref|NP_617608.1| - 1.7e-09 37.9 16.7 3.8e-07 30.4 16.7 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3795) XhlA PF10779.9 gi|20091534|ref|NP_617609.1| - 0.0093 16.2 2.2 0.32 11.2 0.6 2.6 3 0 0 3 3 3 1 Haemolysin XhlA DUF2273 PF10031.9 gi|20091534|ref|NP_617609.1| - 0.021 14.8 3.6 0.031 14.3 3.6 1.3 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) YjhX_toxin PF09857.9 gi|20091534|ref|NP_617609.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 1 0 1 1 1 0 Putative toxin of bacterial toxin-antitoxin pair EIIBC-GUT_C PF07663.11 gi|20091534|ref|NP_617609.1| - 0.17 12.1 0.7 0.3 11.3 0.7 1.3 1 0 0 1 1 1 0 Sorbitol phosphotransferase enzyme II C-terminus UPF0370 PF13980.6 gi|20091534|ref|NP_617609.1| - 9.6 6.3 13.0 11 6.2 7.6 2.7 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0370) Tubulin_2 PF13809.6 gi|20091535|ref|NP_617610.1| - 2.1e-09 37.1 0.7 2.8e-08 33.3 0.0 2.8 3 1 0 3 3 3 1 Tubulin like Tubulin PF00091.25 gi|20091535|ref|NP_617610.1| - 2.3e-05 24.7 0.0 0.0004 20.6 0.1 2.7 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain PI3K_P85_iSH2 PF16454.5 gi|20091535|ref|NP_617610.1| - 0.0024 17.5 12.7 0.14 11.8 2.6 3.8 3 0 0 3 3 3 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Nsp1_C PF05064.13 gi|20091535|ref|NP_617610.1| - 0.017 14.9 2.7 0.071 12.9 1.0 2.9 2 0 0 2 2 2 0 Nsp1-like C-terminal region Baculo_PEP_C PF04513.12 gi|20091535|ref|NP_617610.1| - 0.98 9.5 10.7 0.58 10.2 0.7 4.5 4 1 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.12 gi|20091535|ref|NP_617610.1| - 1.8 8.6 13.3 4.7 7.3 3.9 3.2 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein NPV_P10 PF05531.12 gi|20091535|ref|NP_617610.1| - 2.6 8.5 9.4 0.54 10.8 1.6 3.5 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 gi|20091535|ref|NP_617610.1| - 4.5 7.8 18.9 12 6.5 0.0 4.4 3 1 1 4 4 4 0 Apg6 coiled-coil region Seryl_tRNA_N PF02403.22 gi|20091535|ref|NP_617610.1| - 4.7 7.5 24.4 0.52 10.6 2.4 5.1 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|20091535|ref|NP_617610.1| - 7.5 6.6 10.4 25 4.9 1.3 4.2 4 1 0 5 5 5 0 Protein of unknown function (DUF1664) ABC_tran PF00005.27 gi|20091536|ref|NP_617611.1| - 0.012 16.1 0.1 0.057 13.9 0.0 1.9 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|20091536|ref|NP_617611.1| - 0.026 14.9 0.0 0.056 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ASD2 PF08687.11 gi|20091536|ref|NP_617611.1| - 0.04 13.5 0.1 0.069 12.7 0.1 1.3 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 DUF2075 PF09848.9 gi|20091536|ref|NP_617611.1| - 0.042 13.1 0.0 0.077 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|20091536|ref|NP_617611.1| - 0.045 14.0 0.1 0.51 10.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|20091536|ref|NP_617611.1| - 0.081 13.4 11.5 0.014 15.9 6.1 2.0 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|20091536|ref|NP_617611.1| - 0.094 13.1 0.0 0.27 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.6 gi|20091536|ref|NP_617611.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|20091536|ref|NP_617611.1| - 0.28 11.1 9.8 1.3 8.9 6.6 2.8 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea FliD_C PF07195.12 gi|20091536|ref|NP_617611.1| - 1.3 8.4 8.4 0.058 12.8 2.5 1.7 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Sigma_reg_N PF13800.6 gi|20091537|ref|NP_617612.1| - 0.0054 17.0 0.6 0.12 12.7 0.2 2.7 2 0 0 2 2 2 1 Sigma factor regulator N-terminal CSD2 PF17876.1 gi|20091537|ref|NP_617612.1| - 0.075 13.2 0.0 2.5 8.3 0.0 2.8 2 0 0 2 2 2 0 Cold shock domain YtzH PF14165.6 gi|20091537|ref|NP_617612.1| - 0.61 10.5 3.1 0.75 10.2 0.6 2.7 2 1 1 3 3 3 0 YtzH-like protein Abhydrolase_1 PF00561.20 gi|20091538|ref|NP_617613.1| - 3.9e-35 121.7 0.0 4.9e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|20091538|ref|NP_617613.1| - 9.6e-25 86.8 2.0 2.4e-12 47.1 0.1 2.6 2 0 0 2 2 2 2 CBS domain Hydrolase_4 PF12146.8 gi|20091538|ref|NP_617613.1| - 0.0036 16.6 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|20091538|ref|NP_617613.1| - 0.0064 16.2 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 gi|20091538|ref|NP_617613.1| - 0.14 11.7 0.1 1.3 8.4 0.1 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Cys_Met_Meta_PP PF01053.20 gi|20091539|ref|NP_617614.1| - 4e-146 486.4 0.0 4.6e-146 486.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|20091539|ref|NP_617614.1| - 5.5e-08 32.5 0.0 8.4e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|20091539|ref|NP_617614.1| - 2.5e-06 26.9 0.0 4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|20091539|ref|NP_617614.1| - 0.0002 20.4 0.2 0.00045 19.3 0.1 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|20091539|ref|NP_617614.1| - 0.099 11.9 0.0 0.6 9.3 0.0 1.9 1 1 0 1 1 1 0 Beta-eliminating lyase NadA PF02445.16 gi|20091540|ref|NP_617615.1| - 8.4e-119 396.2 3.0 9.6e-119 396.0 3.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein NifU_N PF01592.16 gi|20091541|ref|NP_617616.1| - 4.2e-48 162.7 0.1 4.7e-48 162.6 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain MazG-like PF12643.7 gi|20091541|ref|NP_617616.1| - 0.035 14.3 0.3 0.061 13.6 0.3 1.4 1 0 0 1 1 1 0 MazG-like family CO_deh_flav_C PF03450.17 gi|20091541|ref|NP_617616.1| - 0.17 12.1 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain Aminotran_5 PF00266.19 gi|20091542|ref|NP_617617.1| - 6e-89 298.6 0.0 7.3e-89 298.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|20091542|ref|NP_617617.1| - 1.2e-05 24.8 0.0 3.1e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|20091542|ref|NP_617617.1| - 0.00028 20.3 0.1 0.00047 19.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 gi|20091542|ref|NP_617617.1| - 0.0045 15.8 0.0 0.007 15.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain YdaS_antitoxin PF15943.5 gi|20091543|ref|NP_617618.1| - 0.0053 16.6 0.1 0.0098 15.7 0.1 1.6 1 1 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 gi|20091543|ref|NP_617618.1| - 0.0079 16.0 0.1 0.028 14.2 0.1 1.8 1 1 1 2 2 2 1 DNA-binding transcriptional regulator Cro HTH_3 PF01381.22 gi|20091543|ref|NP_617618.1| - 0.009 16.1 0.8 0.015 15.4 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 gi|20091543|ref|NP_617618.1| - 0.0096 15.7 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain PaREP1 PF05942.11 gi|20091543|ref|NP_617618.1| - 0.022 14.7 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family HTH_1 PF00126.27 gi|20091543|ref|NP_617618.1| - 0.036 14.0 0.4 0.11 12.4 0.5 1.7 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|20091543|ref|NP_617618.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091543|ref|NP_617618.1| - 0.17 11.9 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix PALP PF00291.25 gi|20091544|ref|NP_617619.1| - 1.2e-70 238.3 1.5 1.3e-70 238.1 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 gi|20091544|ref|NP_617619.1| - 0.041 13.7 0.0 0.071 12.9 0.0 1.5 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein ADH_zinc_N PF00107.26 gi|20091544|ref|NP_617619.1| - 0.054 13.5 0.7 0.27 11.2 0.2 2.3 2 1 0 2 2 2 0 Zinc-binding dehydrogenase FeS_assembly_P PF01883.19 gi|20091545|ref|NP_617620.1| - 1.3e-18 66.9 0.3 2.6e-18 66.0 0.3 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Hexapep PF00132.24 gi|20091545|ref|NP_617620.1| - 3.7e-12 45.4 10.7 1e-06 28.2 2.6 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20091545|ref|NP_617620.1| - 9.6e-09 34.9 11.1 3.8e-05 23.3 2.9 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|20091545|ref|NP_617620.1| - 0.00076 19.8 0.0 0.002 18.5 0.0 1.6 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal TMP-TENI PF02581.17 gi|20091546|ref|NP_617621.1| - 1e-61 207.4 0.6 1.3e-61 207.1 0.6 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|20091546|ref|NP_617621.1| - 0.0005 19.6 1.3 0.0012 18.3 1.3 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase Ribul_P_3_epim PF00834.19 gi|20091546|ref|NP_617621.1| - 0.029 13.8 0.2 0.093 12.1 0.2 1.9 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family BMC PF00936.19 gi|20091546|ref|NP_617621.1| - 0.042 13.8 0.2 0.88 9.6 0.0 2.7 3 0 0 3 3 3 0 BMC domain His_biosynth PF00977.21 gi|20091546|ref|NP_617621.1| - 0.056 12.9 2.0 0.32 10.4 2.0 2.2 1 1 0 1 1 1 0 Histidine biosynthesis protein HK PF02110.15 gi|20091547|ref|NP_617622.1| - 1.5e-78 263.6 3.3 1.7e-78 263.4 3.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|20091547|ref|NP_617622.1| - 7.2e-07 28.8 1.1 8.8e-07 28.5 1.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|20091547|ref|NP_617622.1| - 1.2e-06 28.2 0.6 1.5e-06 27.8 0.6 1.1 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.24 gi|20091547|ref|NP_617622.1| - 0.0016 17.8 0.2 0.002 17.5 0.2 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PKD PF00801.20 gi|20091548|ref|NP_617623.1| - 1.2e-10 41.0 2.5 3.6e-10 39.6 2.5 1.9 1 0 0 1 1 1 1 PKD domain PQQ_2 PF13360.6 gi|20091548|ref|NP_617623.1| - 0.0015 18.1 0.6 0.032 13.8 0.1 2.6 1 1 2 3 3 3 1 PQQ-like domain SGL PF08450.12 gi|20091548|ref|NP_617623.1| - 0.01 15.4 0.7 0.13 11.8 0.1 2.4 1 1 1 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region FAINT PF04385.15 gi|20091548|ref|NP_617623.1| - 0.02 15.0 4.9 0.25 11.4 0.2 3.5 3 0 0 3 3 3 0 Domain of unknown function, DUF529 US22 PF02393.16 gi|20091548|ref|NP_617623.1| - 0.16 12.2 0.0 19 5.5 0.0 2.4 2 0 0 2 2 2 0 US22 like Kelch_3 PF13415.6 gi|20091548|ref|NP_617623.1| - 3.8 7.9 15.1 15 6.0 0.2 6.3 7 1 0 7 7 7 0 Galactose oxidase, central domain PQQ_3 PF13570.6 gi|20091548|ref|NP_617623.1| - 5.6 7.6 9.2 5.8 7.5 0.2 4.8 5 1 1 6 6 6 0 PQQ-like domain MULE PF10551.9 gi|20091549|ref|NP_617624.1| - 0.0004 20.7 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20091549|ref|NP_617624.1| - 0.069 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20091549|ref|NP_617624.1| - 0.16 12.5 1.7 0.51 10.9 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20091549|ref|NP_617624.1| - 0.19 11.5 1.3 0.58 9.9 1.3 1.8 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20091549|ref|NP_617624.1| - 0.41 10.6 3.0 2 8.4 0.3 2.4 2 0 0 2 2 2 0 HIT zinc finger Bac_A_amyl_C PF18612.1 gi|20091550|ref|NP_617625.1| - 0.14 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial Alpha amylase C-terminal domain Orn_Arg_deC_N PF02784.16 gi|20091552|ref|NP_617627.1| - 3.2e-55 187.2 0.0 4e-55 186.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|20091552|ref|NP_617627.1| - 4e-08 33.4 0.0 4.5e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Transposase_20 PF02371.16 gi|20091553|ref|NP_617628.1| - 1.3e-29 102.3 0.0 3.2e-29 101.1 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|20091553|ref|NP_617628.1| - 9.5e-17 61.3 0.6 4.6e-16 59.1 0.0 2.2 3 0 0 3 3 3 1 Transposase 5_3_exonuc PF01367.20 gi|20091553|ref|NP_617628.1| - 0.013 16.0 2.8 1.8 9.2 0.0 3.3 2 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold 23S_rRNA_IVP PF05635.11 gi|20091553|ref|NP_617628.1| - 0.14 12.5 3.7 0.38 11.1 0.2 2.7 2 1 0 2 2 2 0 23S rRNA-intervening sequence protein Methyltransf_31 PF13847.6 gi|20091554|ref|NP_617629.1| - 5.8e-26 91.1 0.0 8e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091554|ref|NP_617629.1| - 1.1e-21 77.2 0.0 2e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091554|ref|NP_617629.1| - 4.2e-20 72.2 0.0 1.2e-19 70.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091554|ref|NP_617629.1| - 2.2e-16 60.1 0.0 2.9e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091554|ref|NP_617629.1| - 2.2e-15 57.2 0.0 4.8e-15 56.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091554|ref|NP_617629.1| - 1.3e-12 47.5 0.0 3e-12 46.4 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|20091554|ref|NP_617629.1| - 2.1e-07 30.2 0.0 4.4e-07 29.1 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|20091554|ref|NP_617629.1| - 3.2e-07 30.0 0.0 6e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|20091554|ref|NP_617629.1| - 7e-07 28.9 0.0 1.3e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase NodS PF05401.11 gi|20091554|ref|NP_617629.1| - 2.6e-06 27.2 0.0 3.6e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|20091554|ref|NP_617629.1| - 4.1e-06 26.7 0.0 6.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|20091554|ref|NP_617629.1| - 8.1e-05 22.0 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain TehB PF03848.14 gi|20091554|ref|NP_617629.1| - 0.00015 21.3 0.0 0.00022 20.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NAS PF03059.16 gi|20091554|ref|NP_617629.1| - 0.0002 20.8 0.0 0.00027 20.4 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein CMAS PF02353.20 gi|20091554|ref|NP_617629.1| - 0.00025 20.4 0.0 0.00034 20.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|20091554|ref|NP_617629.1| - 0.00027 20.7 0.0 0.00041 20.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit TPMT PF05724.11 gi|20091554|ref|NP_617629.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) N2227 PF07942.12 gi|20091554|ref|NP_617629.1| - 0.0052 16.0 0.1 0.049 12.8 0.0 2.0 1 1 1 2 2 2 1 N2227-like protein MetW PF07021.12 gi|20091554|ref|NP_617629.1| - 0.008 15.8 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|20091554|ref|NP_617629.1| - 0.032 14.2 0.0 0.097 12.7 0.0 1.6 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|20091554|ref|NP_617629.1| - 0.034 14.1 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|20091554|ref|NP_617629.1| - 0.077 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase HTH_37 PF13744.6 gi|20091555|ref|NP_617630.1| - 0.088 12.8 0.0 0.22 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PAS_3 PF08447.12 gi|20091556|ref|NP_617631.1| - 4.4e-34 116.6 0.3 3.5e-18 65.7 0.0 2.4 2 0 0 2 2 2 2 PAS fold HisKA_2 PF07568.12 gi|20091556|ref|NP_617631.1| - 7.4e-30 102.9 1.1 5.9e-29 100.0 1.2 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.7 gi|20091556|ref|NP_617631.1| - 1.2e-15 57.6 0.9 7.7e-07 29.3 0.0 2.8 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|20091556|ref|NP_617631.1| - 3.6e-09 37.1 0.1 5.7e-08 33.2 0.0 2.8 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|20091556|ref|NP_617631.1| - 0.00038 20.6 0.5 0.013 15.6 0.1 2.6 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.14 gi|20091556|ref|NP_617631.1| - 0.00075 20.1 0.1 0.0027 18.4 0.1 2.0 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20091556|ref|NP_617631.1| - 0.0068 16.4 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|20091556|ref|NP_617631.1| - 0.0073 16.3 0.1 2.4 8.2 0.1 2.7 2 1 0 2 2 2 2 PAS fold DDE_Tnp_IS1 PF03400.13 gi|20091557|ref|NP_617632.1| - 6.1e-09 36.3 0.1 6.7e-09 36.2 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20091558|ref|NP_617633.1| - 4.7e-06 26.2 0.0 8e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20091558|ref|NP_617633.1| - 5.1e-06 26.3 0.0 8.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20091558|ref|NP_617633.1| - 0.00019 21.5 0.0 0.00031 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20091558|ref|NP_617633.1| - 0.0037 17.0 0.1 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091558|ref|NP_617633.1| - 0.013 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|20091558|ref|NP_617633.1| - 0.018 15.1 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20091558|ref|NP_617633.1| - 0.036 13.0 0.2 0.054 12.5 0.2 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D Zn_Tnp_IS1 PF03811.13 gi|20091558|ref|NP_617633.1| - 0.055 13.2 11.4 0.098 12.4 11.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain zf-Mss51 PF13824.6 gi|20091558|ref|NP_617633.1| - 0.066 13.3 3.4 0.14 12.3 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.7 gi|20091558|ref|NP_617633.1| - 0.21 11.6 8.2 0.35 10.9 8.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|20091558|ref|NP_617633.1| - 0.28 11.2 6.2 0.22 11.4 3.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain MULE PF10551.9 gi|20091559|ref|NP_617634.1| - 6e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091559|ref|NP_617634.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091559|ref|NP_617634.1| - 0.021 14.8 0.1 0.063 13.3 0.1 1.9 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091559|ref|NP_617634.1| - 0.026 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091559|ref|NP_617634.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091559|ref|NP_617634.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091559|ref|NP_617634.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091559|ref|NP_617634.1| - 0.17 12.0 3.3 0.38 10.8 3.3 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091559|ref|NP_617634.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20091559|ref|NP_617634.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091559|ref|NP_617634.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger Hexapep_2 PF14602.6 gi|20091560|ref|NP_617635.1| - 1.8e-07 30.8 9.1 0.00037 20.2 2.3 2.7 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|20091560|ref|NP_617635.1| - 2.7e-07 30.0 14.1 2.2e-05 24.0 2.1 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) rve PF00665.26 gi|20091561|ref|NP_617636.1| - 6.9e-25 87.6 0.0 1.3e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20091561|ref|NP_617636.1| - 5.1e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20091561|ref|NP_617636.1| - 6.5e-05 22.9 0.1 0.0011 19.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|20091561|ref|NP_617636.1| - 0.0027 16.7 0.0 0.0053 15.8 0.0 1.4 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20091561|ref|NP_617636.1| - 0.0035 17.1 0.1 0.0088 15.8 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20091561|ref|NP_617636.1| - 0.0071 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|20091561|ref|NP_617636.1| - 0.013 15.2 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|20091561|ref|NP_617636.1| - 0.016 15.0 0.3 0.1 12.4 0.0 2.4 2 1 1 3 3 3 0 Homeodomain-like domain HTH_5 PF01022.20 gi|20091561|ref|NP_617636.1| - 0.017 15.0 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20091561|ref|NP_617636.1| - 0.029 14.3 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|20091561|ref|NP_617636.1| - 0.034 13.9 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_1 PF13411.6 gi|20091561|ref|NP_617636.1| - 0.052 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_7 PF02796.15 gi|20091561|ref|NP_617636.1| - 0.056 13.5 0.2 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF746 PF05344.11 gi|20091561|ref|NP_617636.1| - 0.057 13.3 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) MetOD2 PF18548.1 gi|20091561|ref|NP_617636.1| - 0.061 13.4 0.0 5.8 7.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 HTH_36 PF13730.6 gi|20091561|ref|NP_617636.1| - 0.073 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|20091561|ref|NP_617636.1| - 0.11 12.6 0.2 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 gi|20091561|ref|NP_617636.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20091561|ref|NP_617636.1| - 0.13 11.9 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) IstB_IS21 PF01695.17 gi|20091562|ref|NP_617637.1| - 6.2e-66 221.5 0.0 1.1e-65 220.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20091562|ref|NP_617637.1| - 3.8e-05 23.6 0.0 7.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20091562|ref|NP_617637.1| - 8.9e-05 22.9 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|20091562|ref|NP_617637.1| - 0.00031 21.0 0.2 0.0043 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20091562|ref|NP_617637.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein RNA_helicase PF00910.22 gi|20091562|ref|NP_617637.1| - 0.0021 18.4 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RuvB_N PF05496.12 gi|20091562|ref|NP_617637.1| - 0.0035 17.1 0.0 0.0074 16.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|20091562|ref|NP_617637.1| - 0.017 15.4 0.2 6.6 7.0 0.0 3.0 1 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|20091562|ref|NP_617637.1| - 0.02 15.3 0.0 0.097 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20091562|ref|NP_617637.1| - 0.021 14.7 0.0 0.062 13.2 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|20091562|ref|NP_617637.1| - 0.026 15.0 1.2 0.26 11.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20091562|ref|NP_617637.1| - 0.043 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|20091562|ref|NP_617637.1| - 0.052 13.0 0.0 0.41 10.1 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|20091562|ref|NP_617637.1| - 0.1 13.1 0.7 0.27 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20091562|ref|NP_617637.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|20091562|ref|NP_617637.1| - 0.25 11.1 1.2 36 4.0 0.0 3.0 1 1 2 3 3 3 0 AAA domain DUF4277 PF14104.6 gi|20091563|ref|NP_617638.1| - 3.2e-38 130.4 0.0 7.7e-38 129.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20091563|ref|NP_617638.1| - 1.6e-11 44.3 0.3 6.4e-11 42.3 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20091563|ref|NP_617638.1| - 0.062 13.6 0.2 11 6.4 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute DJ-1_PfpI PF01965.24 gi|20091564|ref|NP_617639.1| - 0.00027 20.8 0.0 0.00035 20.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family UxaC PF02614.14 gi|20091564|ref|NP_617639.1| - 0.094 11.6 0.0 1.1 8.0 0.0 1.9 1 1 1 2 2 2 0 Glucuronate isomerase Nitroreductase PF00881.24 gi|20091565|ref|NP_617640.1| - 5e-27 95.0 0.0 9.8e-27 94.1 0.0 1.5 2 0 0 2 2 2 1 Nitroreductase family Fer4 PF00037.27 gi|20091565|ref|NP_617640.1| - 3.1e-10 39.4 16.7 5.7e-08 32.2 4.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091565|ref|NP_617640.1| - 2.9e-09 36.9 7.4 5.2e-09 36.1 7.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091565|ref|NP_617640.1| - 1.4e-08 34.8 6.5 2.4e-08 34.0 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20091565|ref|NP_617640.1| - 3e-08 34.1 8.7 9.8e-08 32.5 9.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091565|ref|NP_617640.1| - 3e-08 34.5 3.7 0.0012 19.8 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|20091565|ref|NP_617640.1| - 3.3e-08 33.1 10.9 2.6e-06 27.2 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20091565|ref|NP_617640.1| - 1.2e-07 31.5 13.7 6e-07 29.3 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain TM1586_NiRdase PF14512.6 gi|20091565|ref|NP_617640.1| - 6.7e-07 29.1 0.0 0.015 14.9 0.0 2.5 2 1 0 2 2 2 2 Putative TM nitroreductase Fer4_4 PF12800.7 gi|20091565|ref|NP_617640.1| - 6.3e-05 23.2 10.7 0.014 15.8 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20091565|ref|NP_617640.1| - 7.4e-05 23.1 7.8 0.1 13.1 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20091565|ref|NP_617640.1| - 7.4e-05 23.2 10.0 0.0024 18.4 10.0 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Phage_cap_E PF03864.15 gi|20091565|ref|NP_617640.1| - 0.0001 21.6 0.0 0.00015 21.1 0.0 1.1 1 0 0 1 1 1 1 Phage major capsid protein E Fer4_21 PF14697.6 gi|20091565|ref|NP_617640.1| - 0.0012 18.9 12.6 0.0078 16.3 3.7 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20091565|ref|NP_617640.1| - 0.0055 17.5 16.3 0.033 15.1 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20091565|ref|NP_617640.1| - 0.05 14.4 1.1 0.05 14.4 1.1 2.0 2 0 0 2 2 1 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|20091565|ref|NP_617640.1| - 0.19 12.3 10.8 0.12 12.9 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|20091565|ref|NP_617640.1| - 0.25 11.5 10.5 9.9 6.4 10.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20091565|ref|NP_617640.1| - 3.5 8.5 12.2 19 6.2 3.4 2.3 1 1 1 3 3 3 0 4Fe-4S dicluster domain Abhydrolase_1 PF00561.20 gi|20091566|ref|NP_617641.1| - 1.1e-11 44.8 0.0 2.9e-05 23.8 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|20091566|ref|NP_617641.1| - 2.5e-07 30.2 0.1 0.0029 16.9 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Esterase PF00756.20 gi|20091566|ref|NP_617641.1| - 0.0014 18.4 0.1 0.0018 18.0 0.1 1.2 1 0 0 1 1 1 1 Putative esterase FSH1 PF03959.13 gi|20091566|ref|NP_617641.1| - 0.087 12.5 0.0 0.3 10.7 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) LCM PF04072.14 gi|20091568|ref|NP_617643.1| - 6e-53 179.6 0.0 8.1e-53 179.2 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.23 gi|20091569|ref|NP_617644.1| - 5.3e-16 58.1 0.1 9.5e-16 57.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|20091569|ref|NP_617644.1| - 0.0021 18.3 0.0 0.0043 17.3 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|20091569|ref|NP_617644.1| - 0.0027 17.8 0.0 0.0051 16.9 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|20091569|ref|NP_617644.1| - 0.059 13.5 0.1 0.21 11.7 0.0 1.8 1 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase ADK_lid PF05191.14 gi|20091570|ref|NP_617645.1| - 0.0012 18.7 0.5 1.1 9.2 0.3 2.3 2 0 0 2 2 2 2 Adenylate kinase, active site lid CxC4 PF18717.1 gi|20091570|ref|NP_617645.1| - 0.0069 16.2 0.4 0.012 15.5 0.4 1.4 1 1 0 1 1 1 1 CxC4 like cysteine cluster associated with KDZ transposases CxC3 PF18804.1 gi|20091570|ref|NP_617645.1| - 0.016 15.0 0.2 0.019 14.8 0.2 1.2 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091570|ref|NP_617645.1| - 0.024 14.7 3.0 0.033 14.3 3.0 1.2 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091570|ref|NP_617645.1| - 0.035 14.6 2.7 0.055 14.0 2.7 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain C1_1 PF00130.22 gi|20091570|ref|NP_617645.1| - 0.052 13.5 1.9 0.14 12.1 1.9 1.6 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|20091570|ref|NP_617645.1| - 0.061 13.4 0.2 0.15 12.1 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-HYPF PF07503.12 gi|20091570|ref|NP_617645.1| - 0.11 12.3 1.1 7.3 6.5 0.1 2.5 2 0 0 2 2 2 0 HypF finger Rubredoxin_2 PF18073.1 gi|20091570|ref|NP_617645.1| - 0.51 10.1 3.4 4.7 7.0 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain PHD PF00628.29 gi|20091570|ref|NP_617645.1| - 0.52 10.2 6.0 1.4 8.9 5.3 1.9 1 1 1 2 2 2 0 PHD-finger Arc_trans_TRASH PF08394.10 gi|20091570|ref|NP_617645.1| - 1 9.8 4.9 3.8 7.9 1.5 2.8 2 1 0 2 2 2 0 Archaeal TRASH domain zf-CCHC_5 PF14787.6 gi|20091570|ref|NP_617645.1| - 3.5 7.4 7.7 2.7 7.8 2.4 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger DDE_Tnp_IS66 PF03050.14 gi|20091571|ref|NP_617646.1| - 4.9e-72 242.8 0.0 7.3e-72 242.2 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|20091571|ref|NP_617646.1| - 5.9e-11 42.6 9.7 3e-10 40.3 9.7 2.3 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|20091571|ref|NP_617646.1| - 0.0041 16.5 2.7 1.9 8.0 0.9 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|20091571|ref|NP_617646.1| - 0.02 14.9 1.2 0.09 12.8 1.2 2.1 1 0 0 1 1 1 0 Double zinc ribbon MitMem_reg PF13012.6 gi|20091571|ref|NP_617646.1| - 0.021 15.3 0.4 1.4 9.4 0.0 2.8 3 0 0 3 3 3 0 Maintenance of mitochondrial structure and function SlyX PF04102.12 gi|20091571|ref|NP_617646.1| - 0.022 15.4 3.9 0.062 13.9 0.1 3.3 3 1 0 3 3 3 0 SlyX Mod_r PF07200.13 gi|20091571|ref|NP_617646.1| - 0.031 14.4 2.1 0.73 9.9 0.2 2.9 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DDE_Tnp_IS240 PF13610.6 gi|20091571|ref|NP_617646.1| - 0.059 13.6 0.4 0.69 10.1 0.2 2.3 2 0 0 2 2 2 0 DDE domain DASH_Spc19 PF08287.11 gi|20091571|ref|NP_617646.1| - 0.097 12.6 0.1 0.097 12.6 0.1 2.2 3 0 0 3 3 3 0 Spc19 DUF2034 PF10356.9 gi|20091571|ref|NP_617646.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) zinc_ribbon_2 PF13240.6 gi|20091571|ref|NP_617646.1| - 0.2 11.4 9.6 2.1 8.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|20091571|ref|NP_617646.1| - 0.26 11.2 4.0 3.5 7.6 0.1 2.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS YhfH PF14149.6 gi|20091571|ref|NP_617646.1| - 0.74 9.8 6.2 8.7 6.4 1.7 2.8 2 0 0 2 2 2 0 YhfH-like protein ABC_tran_CTD PF16326.5 gi|20091571|ref|NP_617646.1| - 3 8.2 7.1 1.1 9.5 0.5 2.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|20091571|ref|NP_617646.1| - 8.8 6.5 7.4 7.5 6.7 0.5 3.1 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family MULE PF10551.9 gi|20091572|ref|NP_617647.1| - 2.9e-07 30.8 0.0 7.1e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain LOH1CR12 PF10158.9 gi|20091572|ref|NP_617647.1| - 0.008 16.2 0.1 0.022 14.8 0.1 1.8 1 1 0 1 1 1 1 Tumour suppressor protein DUF659 PF04937.15 gi|20091572|ref|NP_617647.1| - 0.0094 15.8 0.6 0.025 14.5 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF 659) Transposase_mut PF00872.18 gi|20091572|ref|NP_617647.1| - 0.028 13.3 0.0 0.04 12.8 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_ISL3 PF01610.17 gi|20091572|ref|NP_617647.1| - 0.059 13.1 0.2 0.075 12.7 0.2 1.3 1 0 0 1 1 1 0 Transposase Nitroreductase PF00881.24 gi|20091573|ref|NP_617648.1| - 0.14 12.2 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Nitroreductase family FAD_binding_3 PF01494.19 gi|20091574|ref|NP_617649.1| - 5.2e-13 49.0 0.0 2.4e-12 46.8 0.0 1.9 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|20091574|ref|NP_617649.1| - 1.3e-10 41.4 0.0 6.4e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|20091574|ref|NP_617649.1| - 9.9e-06 25.0 0.1 0.0025 17.1 0.0 2.0 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|20091574|ref|NP_617649.1| - 6.4e-05 22.3 0.1 0.00028 20.2 0.0 2.0 2 1 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|20091574|ref|NP_617649.1| - 0.00012 20.9 0.6 0.0033 16.2 0.0 2.3 2 1 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|20091574|ref|NP_617649.1| - 0.00019 20.4 0.1 0.0034 16.3 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|20091574|ref|NP_617649.1| - 0.0003 21.0 0.0 0.00076 19.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|20091574|ref|NP_617649.1| - 0.00033 19.8 0.0 0.001 18.2 0.0 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|20091574|ref|NP_617649.1| - 0.0038 16.5 0.3 0.5 9.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|20091574|ref|NP_617649.1| - 0.0061 17.1 0.1 2.8 8.6 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|20091574|ref|NP_617649.1| - 0.0073 15.4 0.0 0.16 11.0 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 gi|20091574|ref|NP_617649.1| - 0.0077 16.2 0.0 1 9.4 0.0 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|20091574|ref|NP_617649.1| - 0.027 13.5 0.4 0.1 11.7 0.0 2.0 2 1 1 3 3 3 0 Glucose inhibited division protein A DUF4468 PF14730.6 gi|20091574|ref|NP_617649.1| - 0.036 14.4 2.6 0.1 12.9 1.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4468) with TBP-like fold CoA_binding PF02629.19 gi|20091574|ref|NP_617649.1| - 0.045 14.4 0.0 0.14 12.9 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|20091574|ref|NP_617649.1| - 0.15 12.4 0.2 1.8 8.8 0.2 2.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_oxidored PF12831.7 gi|20091574|ref|NP_617649.1| - 0.2 10.9 0.2 1.8 7.8 0.0 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase ThiS PF02597.20 gi|20091575|ref|NP_617650.1| - 0.018 15.7 0.2 0.022 15.4 0.2 1.1 1 0 0 1 1 1 0 ThiS family E1-E2_ATPase PF00122.20 gi|20091575|ref|NP_617650.1| - 0.044 13.3 0.1 0.047 13.2 0.1 1.2 1 0 0 1 1 1 0 E1-E2 ATPase DUF3795 PF12675.7 gi|20091576|ref|NP_617651.1| - 9e-17 61.3 14.0 1.2e-16 60.8 14.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) LIM PF00412.22 gi|20091577|ref|NP_617652.1| - 0.0063 16.7 1.0 0.011 15.9 1.0 1.4 1 0 0 1 1 1 1 LIM domain NMD3 PF04981.13 gi|20091577|ref|NP_617652.1| - 0.02 14.4 0.6 0.032 13.7 0.6 1.3 1 0 0 1 1 1 0 NMD3 family HTH_5 PF01022.20 gi|20091577|ref|NP_617652.1| - 0.026 14.4 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RNHCP PF12647.7 gi|20091577|ref|NP_617652.1| - 0.035 14.1 0.7 0.055 13.5 0.3 1.5 2 0 0 2 2 2 0 RNHCP domain TFIIE_alpha PF02002.17 gi|20091577|ref|NP_617652.1| - 0.079 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.19 gi|20091577|ref|NP_617652.1| - 0.1 12.8 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sgf11 PF08209.11 gi|20091577|ref|NP_617652.1| - 0.24 11.0 0.0 0.24 11.0 0.0 1.6 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Aldo_ket_red PF00248.21 gi|161484934|ref|NP_617654.2| - 1.5e-41 142.5 0.0 4.7e-40 137.6 0.0 2.1 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|161484934|ref|NP_617654.2| - 7.3e-12 45.6 8.4 1.6e-11 44.6 8.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|161484934|ref|NP_617654.2| - 1.9e-10 40.8 8.4 3.2e-10 40.0 8.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|161484934|ref|NP_617654.2| - 5.6e-05 23.2 9.8 0.00016 21.7 9.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|161484934|ref|NP_617654.2| - 7e-05 23.0 3.3 0.055 13.7 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|161484934|ref|NP_617654.2| - 0.00011 22.6 6.5 0.00025 21.4 6.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|161484934|ref|NP_617654.2| - 0.00048 20.2 8.3 0.14 12.3 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|161484934|ref|NP_617654.2| - 0.00049 19.8 3.8 0.0011 18.8 0.2 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|161484934|ref|NP_617654.2| - 0.00086 19.0 2.7 0.00086 19.0 2.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|161484934|ref|NP_617654.2| - 0.0014 19.4 3.3 0.34 11.8 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|161484934|ref|NP_617654.2| - 0.0048 17.8 6.9 0.03 15.2 0.9 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain PA_decarbox PF05870.11 gi|161484934|ref|NP_617654.2| - 0.013 15.1 0.1 1.7 8.3 0.1 2.5 2 0 0 2 2 2 0 Phenolic acid decarboxylase (PAD) Fer4_7 PF12838.7 gi|161484934|ref|NP_617654.2| - 0.017 15.7 11.9 0.08 13.6 12.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|161484934|ref|NP_617654.2| - 0.049 14.2 0.4 0.049 14.2 0.4 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|161484934|ref|NP_617654.2| - 0.23 12.0 14.1 0.16 12.5 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|161484934|ref|NP_617654.2| - 2 9.6 14.1 0.63 11.1 4.3 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|161484934|ref|NP_617654.2| - 2.6 8.3 15.1 0.42 10.8 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|161484934|ref|NP_617654.2| - 2.6 8.8 5.8 2.1 9.1 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain HisKA_2 PF07568.12 gi|20091580|ref|NP_617655.1| - 8.7e-31 105.8 1.1 2.1e-30 104.6 1.1 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_4 PF08448.10 gi|20091580|ref|NP_617655.1| - 2.1e-14 53.7 0.1 1.5e-06 28.4 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|20091580|ref|NP_617655.1| - 2.6e-11 43.7 0.0 3.1e-09 37.0 0.0 3.2 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 gi|20091580|ref|NP_617655.1| - 5.9e-09 35.9 0.0 1.8e-08 34.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|20091580|ref|NP_617655.1| - 1.9e-08 34.8 0.3 9.7e-08 32.5 0.3 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|20091580|ref|NP_617655.1| - 3.5e-08 33.3 0.0 2.2e-06 27.5 0.0 3.3 3 0 0 3 3 3 1 PAS domain HWE_HK PF07536.14 gi|20091580|ref|NP_617655.1| - 0.0098 16.6 0.1 0.023 15.4 0.1 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20091580|ref|NP_617655.1| - 0.02 14.8 0.0 0.058 13.3 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|20091580|ref|NP_617655.1| - 0.032 13.9 0.1 0.1 12.3 0.1 1.9 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain MULE PF10551.9 gi|20091581|ref|NP_617656.1| - 5.8e-07 29.9 0.0 1.4e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091581|ref|NP_617656.1| - 0.013 15.5 0.5 4.2 7.4 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091581|ref|NP_617656.1| - 0.016 15.2 0.1 0.046 13.7 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091581|ref|NP_617656.1| - 0.024 14.5 0.5 0.052 13.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091581|ref|NP_617656.1| - 0.033 14.0 1.2 0.073 12.9 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20091581|ref|NP_617656.1| - 0.055 12.3 0.0 0.087 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091581|ref|NP_617656.1| - 0.064 13.1 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091581|ref|NP_617656.1| - 0.13 12.3 3.3 0.34 11.0 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091581|ref|NP_617656.1| - 0.24 12.0 5.1 0.52 10.9 3.3 2.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20091581|ref|NP_617656.1| - 0.29 11.2 2.6 68 3.6 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20091581|ref|NP_617656.1| - 5.5 7.0 7.1 1.6 8.6 3.1 2.2 2 1 0 2 2 2 0 PHD-finger LCM PF04072.14 gi|20091583|ref|NP_617658.1| - 3.4e-07 30.4 0.0 7.3e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.23 gi|20091584|ref|NP_617659.1| - 2.2e-16 59.4 0.1 4.7e-16 58.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20091584|ref|NP_617659.1| - 0.0002 21.5 0.1 0.0005 20.2 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Cas_NE0113 PF09623.10 gi|20091584|ref|NP_617659.1| - 0.0017 18.1 0.2 0.16 11.7 0.2 2.3 2 0 0 2 2 2 2 CRISPR-associated protein NE0113 (Cas_NE0113) Phage_NinH PF06322.11 gi|20091584|ref|NP_617659.1| - 0.022 14.7 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein Transposase_20 PF02371.16 gi|20091585|ref|NP_617660.1| - 1.3e-29 102.3 0.0 3.2e-29 101.1 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|20091585|ref|NP_617660.1| - 5e-17 62.2 0.4 2.7e-16 59.8 0.0 2.2 3 0 0 3 3 3 1 Transposase 5_3_exonuc PF01367.20 gi|20091585|ref|NP_617660.1| - 0.014 16.0 2.8 1.8 9.2 0.0 3.3 2 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold 23S_rRNA_IVP PF05635.11 gi|20091585|ref|NP_617660.1| - 0.14 12.5 3.7 0.38 11.1 0.2 2.7 2 1 0 2 2 2 0 23S rRNA-intervening sequence protein LCM PF04072.14 gi|20091586|ref|NP_617661.1| - 2.4e-52 177.6 0.0 3.5e-52 177.1 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase DUF1936 PF09151.10 gi|20091586|ref|NP_617661.1| - 0.095 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) TetR_N PF00440.23 gi|20091587|ref|NP_617662.1| - 6.4e-17 61.1 0.2 6.4e-17 61.1 0.2 2.3 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20091587|ref|NP_617662.1| - 0.0094 16.1 0.0 0.021 15.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase PUB PF09409.10 gi|20091587|ref|NP_617662.1| - 0.011 15.6 0.0 0.037 14.0 0.0 1.9 1 0 0 1 1 1 0 PUB domain LCM PF04072.14 gi|20091588|ref|NP_617663.1| - 4.8e-11 42.9 0.0 9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.23 gi|20091589|ref|NP_617664.1| - 2e-14 53.1 0.1 3.8e-14 52.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20091589|ref|NP_617664.1| - 0.0012 18.9 0.4 0.0023 18.1 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase Phage_NinH PF06322.11 gi|20091589|ref|NP_617664.1| - 0.0046 16.8 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Phage NinH protein HTH_40 PF14493.6 gi|20091589|ref|NP_617664.1| - 0.015 15.7 0.1 1.2 9.7 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain TetR_C_17 PF17922.1 gi|20091589|ref|NP_617664.1| - 0.052 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF3795 PF12675.7 gi|20091591|ref|NP_617666.1| - 1.8e-19 69.9 6.7 2.5e-19 69.5 6.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) MSL2-CXC PF16682.5 gi|20091591|ref|NP_617666.1| - 0.017 15.3 0.8 0.017 15.3 0.8 2.4 3 0 0 3 3 3 0 CXC domain of E3 ubiquitin-protein ligase MSL2 DDE_Tnp_1_6 PF13751.6 gi|20091592|ref|NP_617667.1| - 5.9e-29 100.8 8.3 5.9e-29 100.8 8.3 2.0 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|20091592|ref|NP_617667.1| - 2e-14 53.4 0.1 8.4e-14 51.3 0.1 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|20091592|ref|NP_617667.1| - 3.9e-11 43.0 5.8 4.1e-11 43.0 4.1 1.8 1 1 0 1 1 1 1 Transposase DDE domain Ribosomal_L32p PF01783.23 gi|20091592|ref|NP_617667.1| - 0.081 13.2 1.7 0.1 12.9 0.0 2.0 2 0 0 2 2 2 0 Ribosomal L32p protein family Transposase_mut PF00872.18 gi|20091593|ref|NP_617668.1| - 2.8e-10 39.6 0.7 3.4e-10 39.4 0.7 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MarR PF01047.22 gi|20091594|ref|NP_617669.1| - 3.2e-10 39.8 0.1 2e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|20091594|ref|NP_617669.1| - 3.9e-10 40.1 0.2 2.9e-09 37.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|20091594|ref|NP_617669.1| - 7.2e-09 35.4 0.0 2.1e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 MarR family PadR PF03551.14 gi|20091594|ref|NP_617669.1| - 0.00052 19.9 0.1 0.0028 17.6 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|20091594|ref|NP_617669.1| - 0.00079 19.2 0.3 0.0011 18.7 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|20091594|ref|NP_617669.1| - 0.0012 19.0 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Glu-tRNAGln PF02686.15 gi|20091594|ref|NP_617669.1| - 0.01 16.1 0.7 0.029 14.6 0.7 1.8 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit HxlR PF01638.17 gi|20091594|ref|NP_617669.1| - 0.028 14.3 0.0 0.052 13.4 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF5343 PF17278.2 gi|20091594|ref|NP_617669.1| - 0.045 13.8 0.5 0.086 12.9 0.2 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF5343) HTH_Crp_2 PF13545.6 gi|20091594|ref|NP_617669.1| - 0.086 12.8 0.1 0.44 10.5 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Peripla_BP_2 PF01497.18 gi|20091595|ref|NP_617670.1| - 1.3e-67 227.8 0.6 1.6e-67 227.6 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF3920 PF13058.6 gi|20091595|ref|NP_617670.1| - 0.04 14.1 0.1 0.11 12.7 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3920) Methyltransf_2 PF00891.18 gi|20091596|ref|NP_617671.1| - 1.2e-18 67.2 0.0 1.7e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|20091596|ref|NP_617671.1| - 1.7e-09 37.5 0.0 4.4e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_12 PF08242.12 gi|20091596|ref|NP_617671.1| - 1.7e-06 28.7 0.0 3.2e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091596|ref|NP_617671.1| - 0.00015 22.4 0.0 0.00028 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20091596|ref|NP_617671.1| - 0.00024 20.7 0.0 0.0012 18.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|20091596|ref|NP_617671.1| - 0.00044 20.1 0.0 0.00069 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20091596|ref|NP_617671.1| - 0.0039 16.6 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|20091596|ref|NP_617671.1| - 0.0073 16.1 0.1 0.022 14.6 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|20091596|ref|NP_617671.1| - 0.0094 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_11 PF08241.12 gi|20091596|ref|NP_617671.1| - 0.018 15.7 0.0 0.035 14.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain FecCD PF01032.18 gi|20091597|ref|NP_617672.1| - 8.5e-45 153.1 14.5 1e-44 152.8 14.5 1.0 1 0 0 1 1 1 1 FecCD transport family FecCD PF01032.18 gi|20091598|ref|NP_617673.1| - 2.9e-29 102.1 15.1 3.2e-29 101.9 15.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|20091599|ref|NP_617674.1| - 1.5e-31 109.7 0.0 2.2e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|20091599|ref|NP_617674.1| - 8.4e-09 36.2 0.0 9.4e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|20091599|ref|NP_617674.1| - 2.2e-08 34.3 0.1 6.2e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20091599|ref|NP_617674.1| - 3.1e-08 33.3 0.0 9.7e-08 31.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20091599|ref|NP_617674.1| - 3.3e-06 26.7 0.0 6.9e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|20091599|ref|NP_617674.1| - 3.5e-05 22.8 0.8 0.41 9.4 0.1 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|20091599|ref|NP_617674.1| - 0.00023 21.5 0.9 0.0019 18.5 0.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20091599|ref|NP_617674.1| - 0.0023 18.3 0.1 0.0071 16.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|20091599|ref|NP_617674.1| - 0.0037 16.5 0.4 0.02 14.1 0.0 2.0 2 1 1 3 3 3 1 NB-ARC domain AAA_15 PF13175.6 gi|20091599|ref|NP_617674.1| - 0.0057 16.4 0.0 0.013 15.2 0.0 1.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|20091599|ref|NP_617674.1| - 0.0085 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain HSM3_N PF18795.1 gi|20091599|ref|NP_617674.1| - 0.019 14.4 0.3 0.026 13.9 0.3 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain AAA_30 PF13604.6 gi|20091599|ref|NP_617674.1| - 0.019 14.7 0.0 0.073 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|20091599|ref|NP_617674.1| - 0.036 14.3 0.1 0.42 10.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|20091599|ref|NP_617674.1| - 0.05 13.7 0.1 0.074 13.1 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|20091599|ref|NP_617674.1| - 0.053 12.9 0.0 0.17 11.3 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|20091599|ref|NP_617674.1| - 0.059 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|20091599|ref|NP_617674.1| - 0.076 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|20091599|ref|NP_617674.1| - 0.09 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MeaB PF03308.16 gi|20091599|ref|NP_617674.1| - 0.093 11.7 0.1 0.15 11.0 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|20091599|ref|NP_617674.1| - 0.094 12.7 0.0 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|20091599|ref|NP_617674.1| - 0.11 12.9 0.0 0.69 10.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|20091599|ref|NP_617674.1| - 0.15 11.8 0.0 0.33 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|20091599|ref|NP_617674.1| - 0.19 10.5 0.0 0.3 9.8 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein Rad17 PF03215.15 gi|20091599|ref|NP_617674.1| - 0.2 11.5 0.4 6 6.8 0.1 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|20091599|ref|NP_617674.1| - 0.32 9.6 0.1 1.7 7.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Peripla_BP_2 PF01497.18 gi|20091600|ref|NP_617675.1| - 4.1e-22 78.9 0.0 6e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.12 gi|20091602|ref|NP_617677.1| - 1.1e-15 58.0 0.0 2e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091602|ref|NP_617677.1| - 1.8e-15 57.0 0.0 2.2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091602|ref|NP_617677.1| - 1.4e-14 54.5 0.0 2.7e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091602|ref|NP_617677.1| - 6.7e-14 51.8 0.0 1.6e-13 50.5 0.0 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|20091602|ref|NP_617677.1| - 1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.12 gi|20091602|ref|NP_617677.1| - 3.2e-05 24.6 0.0 5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20091602|ref|NP_617677.1| - 0.00048 19.9 0.0 0.00068 19.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|20091602|ref|NP_617677.1| - 0.00051 19.7 0.0 0.00089 18.9 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|20091602|ref|NP_617677.1| - 0.00074 18.7 0.0 0.00087 18.5 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_8 PF05148.15 gi|20091602|ref|NP_617677.1| - 0.0015 18.5 0.0 0.0052 16.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.19 gi|20091602|ref|NP_617677.1| - 0.0017 18.5 0.0 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|20091602|ref|NP_617677.1| - 0.0018 18.1 0.0 0.02 14.7 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20091602|ref|NP_617677.1| - 0.0038 16.8 0.0 0.011 15.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|20091602|ref|NP_617677.1| - 0.0044 16.4 0.0 0.01 15.2 0.0 1.7 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|20091602|ref|NP_617677.1| - 0.026 14.0 0.0 0.063 12.7 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase GCD14 PF08704.10 gi|20091602|ref|NP_617677.1| - 0.063 12.9 0.0 0.4 10.3 0.0 2.0 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_2 PF00891.18 gi|20091602|ref|NP_617677.1| - 0.083 12.2 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain CbiA PF01656.23 gi|20091603|ref|NP_617678.1| - 3.4e-13 49.8 0.0 5.7e-13 49.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20091603|ref|NP_617678.1| - 3.6e-07 29.9 0.1 2.1e-06 27.4 0.0 2.1 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase DUF87 PF01935.17 gi|20091603|ref|NP_617678.1| - 1.8e-06 28.2 0.3 9.8e-06 25.8 0.1 2.0 2 0 0 2 2 2 1 Helicase HerA, central domain APS_kinase PF01583.20 gi|20091603|ref|NP_617678.1| - 1.9e-06 27.8 0.0 3.2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|20091603|ref|NP_617678.1| - 3.3e-06 26.7 0.0 0.00013 21.5 0.1 2.2 1 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|20091603|ref|NP_617678.1| - 3.7e-06 27.0 0.3 7.3e-06 26.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|20091603|ref|NP_617678.1| - 4.7e-06 26.2 0.5 5.6e-05 22.7 0.0 2.4 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|20091603|ref|NP_617678.1| - 6.8e-06 25.5 0.0 2.4e-05 23.8 0.1 1.7 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|20091603|ref|NP_617678.1| - 9e-06 25.1 0.2 2.4e-05 23.7 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|20091603|ref|NP_617678.1| - 2.9e-05 23.9 0.0 0.00015 21.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|20091603|ref|NP_617678.1| - 0.00011 21.9 0.1 0.0046 16.6 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|20091603|ref|NP_617678.1| - 0.00011 22.0 0.1 0.0015 18.4 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop KTI12 PF08433.10 gi|20091603|ref|NP_617678.1| - 0.00017 21.2 0.0 0.00054 19.5 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 cobW PF02492.19 gi|20091603|ref|NP_617678.1| - 0.00019 21.1 0.2 0.014 15.0 0.0 2.6 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|20091603|ref|NP_617678.1| - 0.00035 20.2 0.0 0.065 12.8 0.0 3.1 3 1 0 3 3 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|20091603|ref|NP_617678.1| - 0.00047 20.2 0.1 0.21 11.7 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|20091603|ref|NP_617678.1| - 0.0012 19.2 0.0 0.11 12.9 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|20091603|ref|NP_617678.1| - 0.0013 18.1 0.1 0.0028 17.0 0.0 1.5 2 0 0 2 2 1 1 Zeta toxin TrkA_N PF02254.18 gi|20091603|ref|NP_617678.1| - 0.0014 18.9 0.2 0.11 12.7 0.0 2.7 2 1 1 3 3 3 1 TrkA-N domain ABC_tran PF00005.27 gi|20091603|ref|NP_617678.1| - 0.0016 19.0 0.2 0.0026 18.3 0.2 1.6 1 1 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.17 gi|20091603|ref|NP_617678.1| - 0.0021 17.8 0.1 0.0055 16.4 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein MeaB PF03308.16 gi|20091603|ref|NP_617678.1| - 0.0031 16.5 0.0 0.0059 15.6 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|20091603|ref|NP_617678.1| - 0.0034 17.7 0.0 0.045 14.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|20091603|ref|NP_617678.1| - 0.0035 17.0 0.0 0.041 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|20091603|ref|NP_617678.1| - 0.0037 17.8 0.1 0.01 16.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|20091603|ref|NP_617678.1| - 0.0095 14.9 0.0 0.072 12.0 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.6 gi|20091603|ref|NP_617678.1| - 0.028 14.6 0.0 0.061 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|20091603|ref|NP_617678.1| - 0.029 14.1 0.0 0.1 12.3 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.15 gi|20091603|ref|NP_617678.1| - 0.031 14.2 0.2 0.31 11.0 0.0 2.3 2 0 0 2 2 2 0 NTPase G-alpha PF00503.20 gi|20091603|ref|NP_617678.1| - 0.039 13.1 0.3 0.15 11.1 0.1 1.8 2 0 0 2 2 2 0 G-protein alpha subunit ATPase PF06745.13 gi|20091603|ref|NP_617678.1| - 0.04 13.3 0.0 0.092 12.1 0.0 1.6 2 0 0 2 2 2 0 KaiC PglD_N PF17836.1 gi|20091603|ref|NP_617678.1| - 0.047 14.3 0.2 3 8.6 0.0 3.2 3 1 0 3 3 3 0 PglD N-terminal domain MobB PF03205.14 gi|20091603|ref|NP_617678.1| - 0.058 13.3 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|20091603|ref|NP_617678.1| - 0.067 13.0 0.1 0.3 10.9 0.0 2.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|20091603|ref|NP_617678.1| - 0.068 12.9 0.4 0.24 11.1 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain CSN4_RPN5_eIF3a PF18420.1 gi|20091603|ref|NP_617678.1| - 0.068 13.4 0.2 0.27 11.4 0.0 2.0 2 0 0 2 2 1 0 CSN4/RPN5/eIF3a helix turn helix domain NB-ARC PF00931.22 gi|20091603|ref|NP_617678.1| - 0.075 12.2 0.1 0.14 11.3 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|20091603|ref|NP_617678.1| - 0.075 13.4 0.0 0.24 11.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.14 gi|20091603|ref|NP_617678.1| - 0.12 12.4 0.1 0.42 10.6 0.0 2.0 3 0 0 3 3 1 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|20091603|ref|NP_617678.1| - 0.13 11.1 0.1 0.34 9.8 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Rad17 PF03215.15 gi|20091603|ref|NP_617678.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.6 2 0 0 2 2 1 0 Rad17 P-loop domain Torsin PF06309.11 gi|20091603|ref|NP_617678.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_30 PF13604.6 gi|20091603|ref|NP_617678.1| - 0.19 11.4 0.2 0.49 10.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20091603|ref|NP_617678.1| - 0.2 11.6 0.2 2.8 7.8 0.1 2.3 2 0 0 2 2 2 0 NACHT domain Methyltransf_31 PF13847.6 gi|20091604|ref|NP_617679.1| - 1.8e-19 70.1 0.0 2.1e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091604|ref|NP_617679.1| - 5e-17 62.4 0.0 7.4e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091604|ref|NP_617679.1| - 1.9e-15 57.3 0.0 2.7e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091604|ref|NP_617679.1| - 5.5e-15 55.3 0.0 6.8e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20091604|ref|NP_617679.1| - 3.8e-13 49.6 0.0 4.8e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091604|ref|NP_617679.1| - 1.6e-10 41.6 0.0 2.3e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20091604|ref|NP_617679.1| - 1.6e-08 34.5 0.0 2e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20091604|ref|NP_617679.1| - 3.5e-07 29.9 0.0 3.3e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|20091604|ref|NP_617679.1| - 8.8e-07 28.6 0.0 1.2e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|20091604|ref|NP_617679.1| - 8.8e-07 29.2 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|20091604|ref|NP_617679.1| - 5.3e-06 26.4 0.0 0.00018 21.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|20091604|ref|NP_617679.1| - 6.1e-06 25.6 0.0 8.3e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltr_RsmB-F PF01189.17 gi|20091604|ref|NP_617679.1| - 1.9e-05 24.4 0.0 4.5e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|20091604|ref|NP_617679.1| - 0.00015 21.1 0.0 0.00019 20.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|20091604|ref|NP_617679.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|20091604|ref|NP_617679.1| - 0.0012 18.8 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|20091604|ref|NP_617679.1| - 0.0028 17.4 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase RrnaAD PF00398.20 gi|20091604|ref|NP_617679.1| - 0.0029 16.7 0.0 0.0033 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.17 gi|20091604|ref|NP_617679.1| - 0.0032 16.6 0.0 0.004 16.3 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|20091604|ref|NP_617679.1| - 0.0039 16.9 0.0 0.0051 16.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit TehB PF03848.14 gi|20091604|ref|NP_617679.1| - 0.0062 16.0 0.0 0.008 15.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|20091604|ref|NP_617679.1| - 0.0094 15.4 0.0 0.045 13.2 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_9 PF08003.11 gi|20091604|ref|NP_617679.1| - 0.011 14.7 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MetW PF07021.12 gi|20091604|ref|NP_617679.1| - 0.018 14.6 0.1 0.045 13.3 0.0 1.6 1 1 1 2 2 2 0 Methionine biosynthesis protein MetW NNMT_PNMT_TEMT PF01234.17 gi|20091604|ref|NP_617679.1| - 0.05 12.8 0.0 0.18 10.9 0.0 1.8 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_15 PF09445.10 gi|20091604|ref|NP_617679.1| - 0.057 13.0 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase GidB PF02527.15 gi|20091604|ref|NP_617679.1| - 0.13 11.6 0.1 0.32 10.3 0.1 1.6 1 1 1 2 2 2 0 rRNA small subunit methyltransferase G Rsm22 PF09243.10 gi|20091604|ref|NP_617679.1| - 0.19 11.0 0.0 0.24 10.7 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 TetR_N PF00440.23 gi|20091605|ref|NP_617680.1| - 2.9e-18 65.4 0.4 7e-18 64.1 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20091605|ref|NP_617680.1| - 0.00029 21.0 0.3 0.0023 18.0 0.3 2.0 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_4 PF08359.11 gi|20091605|ref|NP_617680.1| - 0.00091 19.4 0.0 0.0016 18.6 0.0 1.4 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region PP_M1 PF03012.14 gi|20091605|ref|NP_617680.1| - 0.0047 16.5 0.1 0.0058 16.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoprotein TetR_C_27 PF17935.1 gi|20091605|ref|NP_617680.1| - 0.038 14.0 0.0 0.081 13.0 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Cep57_MT_bd PF06657.13 gi|20091605|ref|NP_617680.1| - 0.056 13.9 0.2 10 6.7 0.1 2.5 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 TetR_C_29 PF17938.1 gi|20091605|ref|NP_617680.1| - 0.056 13.5 0.0 0.23 11.6 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Eisosome1 PF12757.7 gi|20091605|ref|NP_617680.1| - 0.13 12.6 1.3 0.42 10.9 0.1 2.2 2 1 1 3 3 3 0 Eisosome protein 1 DUF234 PF03008.14 gi|20091606|ref|NP_617681.1| - 0.065 13.7 0.1 0.17 12.4 0.1 1.6 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function APP_amyloid PF10515.9 gi|20091606|ref|NP_617681.1| - 0.3 11.6 2.1 6.8 7.3 0.5 2.8 2 0 0 2 2 2 0 Beta-amyloid precursor protein C-terminus PAS_3 PF08447.12 gi|20091607|ref|NP_617682.1| - 1.3e-67 224.1 0.0 1.3e-20 73.4 0.0 6.4 6 1 0 6 6 6 5 PAS fold PAS_9 PF13426.7 gi|20091607|ref|NP_617682.1| - 8.5e-56 186.6 3.7 7.4e-15 55.1 0.0 7.6 7 0 0 7 7 7 5 PAS domain PAS PF00989.25 gi|20091607|ref|NP_617682.1| - 9e-54 180.3 0.0 4e-14 52.6 0.0 6.4 6 0 0 6 6 6 6 PAS fold PAS_4 PF08448.10 gi|20091607|ref|NP_617682.1| - 1.3e-36 125.2 0.0 2.3e-09 37.5 0.0 7.0 6 1 0 6 6 6 5 PAS fold PAS_8 PF13188.7 gi|20091607|ref|NP_617682.1| - 5.5e-32 109.2 0.0 4.6e-08 32.9 0.0 5.4 6 0 0 6 6 5 4 PAS domain HisKA_2 PF07568.12 gi|20091607|ref|NP_617682.1| - 1.3e-30 105.3 2.4 7.2e-30 102.9 2.4 2.4 1 0 0 1 1 1 1 Histidine kinase PAS_7 PF12860.7 gi|20091607|ref|NP_617682.1| - 7.8e-12 45.4 6.5 0.03 14.5 0.0 7.9 9 0 0 9 9 9 2 PAS fold PAS_10 PF13596.6 gi|20091607|ref|NP_617682.1| - 9.7e-10 39.0 0.0 0.0015 19.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|20091607|ref|NP_617682.1| - 1.6e-07 31.8 0.2 7.1e-07 29.7 0.2 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|20091607|ref|NP_617682.1| - 0.0031 18.2 0.6 0.013 16.2 0.2 2.3 2 0 0 2 2 2 1 HWE histidine kinase AcetDehyd-dimer PF09290.11 gi|20091607|ref|NP_617682.1| - 0.0041 17.3 0.4 3.3 7.9 0.0 2.4 2 0 0 2 2 2 2 Prokaryotic acetaldehyde dehydrogenase, dimerisation PAS_12 PF18095.1 gi|20091607|ref|NP_617682.1| - 0.014 15.0 0.0 1.6 8.4 0.0 3.0 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HATPase_c_2 PF13581.6 gi|20091607|ref|NP_617682.1| - 0.078 12.9 0.0 0.29 11.1 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Salt_tol_Pase PF09506.10 gi|20091607|ref|NP_617682.1| - 0.21 10.3 2.2 2.2 7.0 0.1 2.9 3 0 0 3 3 3 0 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) Hydrolase_3 PF08282.12 gi|20091607|ref|NP_617682.1| - 0.72 9.5 4.7 4.2 7.0 0.1 3.2 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase Atg14 PF10186.9 gi|20091607|ref|NP_617682.1| - 0.87 8.6 5.3 2.3 7.2 0.0 2.8 3 0 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 HTH_23 PF13384.6 gi|20091608|ref|NP_617683.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20091608|ref|NP_617683.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20091608|ref|NP_617683.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20091608|ref|NP_617683.1| - 0.002 17.8 0.1 0.0069 16.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20091608|ref|NP_617683.1| - 0.0065 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20091608|ref|NP_617683.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20091608|ref|NP_617683.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20091608|ref|NP_617683.1| - 0.02 13.9 0.1 0.036 13.0 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20091608|ref|NP_617683.1| - 0.043 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20091608|ref|NP_617683.1| - 0.057 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20091608|ref|NP_617683.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20091608|ref|NP_617683.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20091608|ref|NP_617683.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin DDE_Tnp_IS1 PF03400.13 gi|20091609|ref|NP_617684.1| - 6.1e-09 36.3 0.1 6.7e-09 36.2 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20091610|ref|NP_617685.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Pex14_N PF04695.13 gi|20091610|ref|NP_617685.1| - 0.023 15.4 2.7 0.025 15.3 2.7 1.1 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_37 PF13744.6 gi|20091610|ref|NP_617685.1| - 0.034 14.1 0.3 0.074 13.0 0.1 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|20091610|ref|NP_617685.1| - 0.088 12.9 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix YcaO_C PF18381.1 gi|20091610|ref|NP_617685.1| - 0.092 12.6 0.1 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 YcaO cyclodehydratase C-terminal domain Sigma70_r4 PF04545.16 gi|20091610|ref|NP_617685.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.5 2 0 0 2 2 2 0 Sigma-70, region 4 Fib_alpha PF08702.10 gi|20091611|ref|NP_617686.1| - 0.0038 17.4 0.3 0.0045 17.2 0.3 1.1 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family OATP PF03137.20 gi|20091611|ref|NP_617686.1| - 0.14 10.4 1.2 0.21 9.9 1.2 1.2 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family UPF0242 PF06785.11 gi|20091611|ref|NP_617686.1| - 0.66 10.1 6.0 0.1 12.7 2.1 1.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus COG2 PF06148.11 gi|20091613|ref|NP_617688.1| - 0.088 12.9 0.0 0.094 12.8 0.0 1.1 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 RVP PF00077.20 gi|20091614|ref|NP_617689.1| - 5.9e-05 23.3 0.0 7.1e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease_2 PF13650.6 gi|20091614|ref|NP_617689.1| - 0.00018 22.1 0.0 0.00025 21.6 0.0 1.3 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|20091614|ref|NP_617689.1| - 0.00056 20.4 0.0 0.00081 19.9 0.0 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Phage_integrase PF00589.22 gi|20091615|ref|NP_617690.1| - 6.4e-07 29.3 0.0 1.2e-05 25.1 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family PKD PF00801.20 gi|20091616|ref|NP_617691.1| - 2.6e-58 193.8 59.1 1.8e-15 56.5 5.1 7.9 7 1 0 7 7 7 5 PKD domain CHB_HEX_C_1 PF13290.6 gi|20091616|ref|NP_617691.1| - 1.7e-43 146.4 23.2 2.7e-17 62.5 2.9 7.5 9 0 0 9 9 7 3 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 gi|20091616|ref|NP_617691.1| - 5.8e-42 141.7 25.7 4e-14 52.5 3.6 5.2 4 0 0 4 4 4 3 Fn3 associated DUF2341 PF10102.9 gi|20091616|ref|NP_617691.1| - 8.4e-42 141.7 33.7 3.5e-22 78.8 6.4 5.5 4 0 0 4 4 4 2 Domain of unknown function (DUF2341) DUF3344 PF11824.8 gi|20091616|ref|NP_617691.1| - 6.3e-31 108.0 17.1 6.3e-31 108.0 17.1 4.8 6 1 0 6 6 4 1 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|20091616|ref|NP_617691.1| - 5.8e-25 87.5 14.0 5.8e-25 87.5 14.0 5.5 4 1 0 4 4 4 1 CARDB CHB_HEX_C PF03174.13 gi|20091616|ref|NP_617691.1| - 9.7e-08 31.9 5.0 0.15 12.0 0.0 5.3 6 0 0 6 6 5 3 Chitobiase/beta-hexosaminidase C-terminal domain Big_3_4 PF13754.6 gi|20091616|ref|NP_617691.1| - 2.5e-06 27.2 0.3 0.16 11.7 0.0 4.1 3 0 0 3 3 3 1 Domain of unknown function MG2 PF01835.19 gi|20091616|ref|NP_617691.1| - 0.01 16.3 11.5 1.2 9.6 0.2 5.5 5 0 0 5 5 5 0 MG2 domain Lysyl_oxidase PF01186.17 gi|20091616|ref|NP_617691.1| - 0.11 12.1 0.5 0.45 10.1 0.1 2.1 2 0 0 2 2 2 0 Lysyl oxidase Dockerin_1 PF00404.18 gi|20091616|ref|NP_617691.1| - 0.18 12.0 1.3 1.6 9.0 0.1 3.0 2 0 0 2 2 2 0 Dockerin type I domain HAV_VP PF12944.7 gi|20091616|ref|NP_617691.1| - 0.23 11.4 8.0 2.4 8.1 0.3 2.8 3 0 0 3 3 2 0 Hepatitis A virus viral protein VP Big_3_2 PF12245.8 gi|20091616|ref|NP_617691.1| - 0.24 11.7 8.5 4 7.7 0.1 4.9 4 0 0 4 4 4 0 Bacterial Ig-like domain EF-hand_6 PF13405.6 gi|20091616|ref|NP_617691.1| - 0.36 10.9 5.5 0.088 12.8 0.5 2.7 3 0 0 3 3 2 0 EF-hand domain PKD_3 PF16820.5 gi|20091616|ref|NP_617691.1| - 0.45 10.3 23.6 2.4 8.0 0.1 6.9 8 0 0 8 8 7 0 PKD-like domain EF-hand_8 PF13833.6 gi|20091616|ref|NP_617691.1| - 2 8.3 3.8 5.4 6.9 2.8 2.3 2 0 0 2 2 2 0 EF-hand domain pair SoxZ PF08770.11 gi|20091616|ref|NP_617691.1| - 3.1 7.6 6.5 40 4.1 0.2 4.3 4 0 0 4 4 4 0 Sulphur oxidation protein SoxZ Ig_3 PF13927.6 gi|20091616|ref|NP_617691.1| - 4.2 8.0 26.3 3.8 8.2 0.1 8.6 8 0 0 8 8 8 0 Immunoglobulin domain PEGA PF08308.11 gi|20091617|ref|NP_617692.1| - 2.3e-19 69.0 0.0 5.9e-19 67.7 0.0 1.8 1 0 0 1 1 1 1 PEGA domain Kelch_4 PF13418.6 gi|20091617|ref|NP_617692.1| - 0.03 14.3 3.6 14 5.8 0.0 4.6 5 0 0 5 5 5 0 Galactose oxidase, central domain DUF4075 PF13294.6 gi|20091617|ref|NP_617692.1| - 0.075 13.2 0.4 0.19 11.9 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) Peptidase_S49_N PF08496.10 gi|20091618|ref|NP_617693.1| - 2.1 8.4 4.6 0.42 10.7 0.3 2.0 2 0 0 2 2 2 0 Peptidase family S49 N-terminal RVT_1 PF00078.27 gi|20091619|ref|NP_617694.1| - 1.6e-46 158.6 0.0 2.7e-46 157.9 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 gi|20091619|ref|NP_617694.1| - 4.1e-19 68.4 6.6 4.1e-19 68.4 6.6 2.1 2 0 0 2 2 2 1 Group II intron, maturase-specific domain GIIM PF08388.11 gi|20091621|ref|NP_617696.1| - 2.4e-24 85.2 4.2 5.9e-24 83.9 4.2 1.7 1 0 0 1 1 1 1 Group II intron, maturase-specific domain DDE_Tnp_1_6 PF13751.6 gi|20091622|ref|NP_617697.1| - 6.7e-29 100.7 8.3 6.7e-29 100.7 8.3 1.9 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|20091622|ref|NP_617697.1| - 1.7e-13 50.4 0.1 6.8e-13 48.4 0.0 2.0 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|20091622|ref|NP_617697.1| - 2.2e-11 43.8 4.8 3.5e-11 43.2 3.7 1.9 1 1 0 1 1 1 1 Transposase DDE domain Ribosomal_L32p PF01783.23 gi|20091622|ref|NP_617697.1| - 0.093 13.0 1.7 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF3106 PF11304.8 gi|20091625|ref|NP_617700.1| - 0.029 14.9 0.0 0.032 14.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) Fur_reg_FbpA PF13076.6 gi|20091626|ref|NP_617701.1| - 0.028 14.1 0.0 0.13 11.9 0.0 2.3 1 0 0 1 1 1 0 Fur-regulated basic protein A Erp_C PF06780.11 gi|20091628|ref|NP_617703.1| - 0.015 15.3 1.3 0.015 15.3 1.3 1.5 2 0 0 2 2 2 0 Erp protein C-terminus HEAT_2 PF13646.6 gi|20091630|ref|NP_617705.1| - 4.1e-32 110.4 1.1 8.5e-19 67.7 0.9 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|20091630|ref|NP_617705.1| - 9.8e-20 69.2 1.6 9.1e-06 25.9 0.3 5.5 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20091630|ref|NP_617705.1| - 2.3e-15 55.4 0.6 0.0047 17.1 0.0 6.0 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.6 gi|20091630|ref|NP_617705.1| - 4e-12 46.4 0.1 0.0062 17.0 0.2 4.3 2 1 2 4 4 4 4 HEAT-like repeat HEPN_Apea PF18739.1 gi|20091630|ref|NP_617705.1| - 8.8e-10 38.9 5.3 5.8e-09 36.3 0.0 3.8 3 1 0 3 3 3 1 Apea-like HEPN Arm PF00514.23 gi|20091630|ref|NP_617705.1| - 7.3e-06 25.8 0.6 0.13 12.3 0.0 4.5 4 1 1 5 5 5 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|20091630|ref|NP_617705.1| - 1.4e-05 25.2 0.0 0.092 12.8 0.1 3.0 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 Phage_integrase PF00589.22 gi|20091635|ref|NP_617710.1| - 1.1e-17 64.4 0.0 1.6e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|20091635|ref|NP_617710.1| - 6.6e-13 48.9 0.1 2.1e-12 47.4 0.1 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|20091635|ref|NP_617710.1| - 3.7e-08 33.6 0.0 1e-07 32.1 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|20091635|ref|NP_617710.1| - 0.0011 19.2 0.2 0.007 16.7 0.1 2.3 1 1 0 1 1 1 1 Phage integrase SAM-like domain HTH_40 PF14493.6 gi|20091635|ref|NP_617710.1| - 0.041 14.3 0.1 0.13 12.7 0.0 1.9 3 0 0 3 3 3 0 Helix-turn-helix domain FKBP_C PF00254.28 gi|20091637|ref|NP_617712.1| - 1.6e-13 50.8 0.5 1e-10 41.8 0.1 2.6 2 1 0 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|20091637|ref|NP_617712.1| - 2.6e-06 27.4 0.0 6.6e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 FKBP26_C-terminal NikR_C PF08753.11 gi|20091638|ref|NP_617713.1| - 2.1e-28 98.3 0.8 3.1e-28 97.7 0.8 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|20091638|ref|NP_617713.1| - 3.9e-06 26.6 0.0 1.4e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|20091638|ref|NP_617713.1| - 0.042 14.0 0.0 0.11 12.6 0.0 1.7 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Bromo_TP PF07524.13 gi|20091638|ref|NP_617713.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Bromodomain associated Acetyltransf_1 PF00583.25 gi|20091639|ref|NP_617714.1| - 1.2e-18 67.4 0.0 1.7e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20091639|ref|NP_617714.1| - 3.5e-13 49.8 0.2 6.2e-13 49.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20091639|ref|NP_617714.1| - 1.9e-11 44.0 0.3 3.2e-11 43.3 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20091639|ref|NP_617714.1| - 9.5e-10 38.8 2.5 1.1e-09 38.7 2.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20091639|ref|NP_617714.1| - 1.5e-07 31.3 0.0 2.3e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_15 PF17013.5 gi|20091639|ref|NP_617714.1| - 1.1e-06 28.2 2.5 1.5e-06 27.9 2.5 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_9 PF13527.7 gi|20091639|ref|NP_617714.1| - 5.9e-06 26.4 0.0 9.7e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20091639|ref|NP_617714.1| - 0.00027 21.6 0.0 0.00031 21.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20091639|ref|NP_617714.1| - 0.0037 17.4 0.0 0.0069 16.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|20091639|ref|NP_617714.1| - 0.025 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Nudix_hydro PF18290.1 gi|20091639|ref|NP_617714.1| - 0.028 14.4 0.0 0.059 13.4 0.0 1.5 1 0 0 1 1 1 0 Nudix hydrolase domain Acetyltransf_1 PF00583.25 gi|20091640|ref|NP_617715.1| - 1.4e-17 64.0 0.0 2.1e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20091640|ref|NP_617715.1| - 1.9e-12 47.2 0.3 3e-12 46.6 0.3 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20091640|ref|NP_617715.1| - 8.7e-12 45.3 0.1 1.6e-11 44.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20091640|ref|NP_617715.1| - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|20091640|ref|NP_617715.1| - 4.2e-08 33.5 0.9 5.6e-08 33.1 0.9 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20091640|ref|NP_617715.1| - 1.3e-06 28.5 0.0 2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|20091640|ref|NP_617715.1| - 0.00035 20.1 2.7 0.00054 19.5 2.5 1.3 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|20091640|ref|NP_617715.1| - 0.0024 18.6 0.0 0.003 18.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20091640|ref|NP_617715.1| - 0.0026 17.9 0.0 0.0052 16.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|20091640|ref|NP_617715.1| - 0.059 13.1 0.0 0.088 12.5 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Phage_int_SAM_6 PF18644.1 gi|20091640|ref|NP_617715.1| - 0.43 10.6 3.8 0.65 10.0 0.9 2.3 1 1 2 3 3 3 0 Phage integrase SAM-like domain Na_Ca_ex PF01699.24 gi|20091641|ref|NP_617716.1| - 9.4e-53 178.2 43.1 2.8e-26 92.3 16.9 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Trypan_PARP PF05887.11 gi|20091641|ref|NP_617716.1| - 0.15 12.0 1.3 0.27 11.2 1.3 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) ACT_7 PF13840.6 gi|20091642|ref|NP_617717.1| - 3.6e-23 81.1 0.0 5.2e-23 80.6 0.0 1.3 1 0 0 1 1 1 1 ACT domain Castor1_N PF18700.1 gi|20091642|ref|NP_617717.1| - 0.034 14.0 0.1 0.071 12.9 0.1 1.5 1 0 0 1 1 1 0 Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain ACT PF01842.25 gi|20091642|ref|NP_617717.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.5 1 1 0 1 1 1 0 ACT domain DUF2582 PF10771.9 gi|20091643|ref|NP_617718.1| - 5.1e-22 77.8 0.1 5.5e-22 77.7 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) LIX1 PF14954.6 gi|20091643|ref|NP_617718.1| - 0.05 12.9 0.0 0.054 12.8 0.0 1.0 1 0 0 1 1 1 0 Limb expression 1 DDE_Tnp_1_6 PF13751.6 gi|20091644|ref|NP_617719.1| - 1.1e-30 106.4 7.4 1.5e-30 106.0 7.4 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20091644|ref|NP_617719.1| - 0.00068 19.4 1.7 0.001 18.8 1.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF2800 PF10926.8 gi|20091644|ref|NP_617719.1| - 0.02 14.1 1.4 0.025 13.8 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) IstB_IS21 PF01695.17 gi|20091645|ref|NP_617720.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20091645|ref|NP_617720.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20091645|ref|NP_617720.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20091645|ref|NP_617720.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20091645|ref|NP_617720.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20091645|ref|NP_617720.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20091645|ref|NP_617720.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20091645|ref|NP_617720.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20091645|ref|NP_617720.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20091645|ref|NP_617720.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20091645|ref|NP_617720.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20091645|ref|NP_617720.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20091645|ref|NP_617720.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20091645|ref|NP_617720.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20091645|ref|NP_617720.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20091645|ref|NP_617720.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20091645|ref|NP_617720.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20091645|ref|NP_617720.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20091645|ref|NP_617720.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20091646|ref|NP_617721.1| - 3.4e-24 85.3 0.0 6e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20091646|ref|NP_617721.1| - 1.4e-05 25.0 0.2 3.4e-05 23.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|20091646|ref|NP_617721.1| - 5.8e-05 22.8 0.6 0.00039 20.1 0.0 2.6 2 1 1 3 3 3 1 Homeodomain-like domain rve_3 PF13683.6 gi|20091646|ref|NP_617721.1| - 7.4e-05 22.5 0.0 0.00016 21.4 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.6 gi|20091646|ref|NP_617721.1| - 0.00015 21.4 0.2 0.00033 20.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091646|ref|NP_617721.1| - 0.00061 19.8 0.0 0.0091 16.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|20091646|ref|NP_617721.1| - 0.01 15.3 0.2 0.055 13.0 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_Tc3_1 PF11427.8 gi|20091646|ref|NP_617721.1| - 0.012 15.5 0.0 0.042 13.7 0.0 1.9 1 0 0 1 1 1 0 Tc3 transposase Terminase_5 PF06056.12 gi|20091646|ref|NP_617721.1| - 0.017 15.0 0.1 0.058 13.3 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20091646|ref|NP_617721.1| - 0.018 15.1 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|20091646|ref|NP_617721.1| - 0.064 12.9 0.1 0.18 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20091646|ref|NP_617721.1| - 0.095 12.6 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein NUMOD1 PF07453.13 gi|20091646|ref|NP_617721.1| - 0.13 12.5 0.0 5.5 7.4 0.0 2.6 2 0 0 2 2 2 0 NUMOD1 domain HTH_28 PF13518.6 gi|20091646|ref|NP_617721.1| - 0.13 12.4 0.0 0.44 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF772 PF05598.11 gi|20091647|ref|NP_617722.1| - 1.8e-14 53.5 0.1 3.2e-14 52.7 0.1 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) FliH PF02108.16 gi|20091647|ref|NP_617722.1| - 0.14 12.3 1.4 0.35 10.9 0.2 2.1 2 0 0 2 2 2 0 Flagellar assembly protein FliH DUF3437 PF11919.8 gi|20091647|ref|NP_617722.1| - 0.17 11.8 0.8 0.7 9.9 0.0 2.4 4 0 0 4 4 4 0 Domain of unknown function (DUF3437) Desulfoferrod_N PF06397.12 gi|20091649|ref|NP_617724.1| - 0.081 12.6 12.2 1.6 8.4 0.2 3.6 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain MCM_OB PF17207.3 gi|20091649|ref|NP_617724.1| - 0.17 11.7 2.6 0.35 10.7 0.1 2.2 2 0 0 2 2 2 0 MCM OB domain DUF3268 PF11672.8 gi|20091649|ref|NP_617724.1| - 0.29 11.4 4.8 0.86 9.9 0.2 2.8 2 1 1 3 3 3 0 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|20091649|ref|NP_617724.1| - 0.31 10.5 0.1 0.31 10.5 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain DZR PF12773.7 gi|20091649|ref|NP_617724.1| - 0.53 10.4 7.4 48 4.1 7.4 3.0 1 1 0 1 1 1 0 Double zinc ribbon zf-BED PF02892.15 gi|20091649|ref|NP_617724.1| - 0.84 9.7 0.1 0.84 9.7 0.1 4.1 4 0 0 4 4 4 0 BED zinc finger Rubredoxin_2 PF18073.1 gi|20091649|ref|NP_617724.1| - 1.1 9.0 11.0 4.9 7.0 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|20091649|ref|NP_617724.1| - 2.1 8.6 10.2 19 5.5 0.3 4.0 4 0 0 4 4 4 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|20091649|ref|NP_617724.1| - 2.4 8.0 15.1 1.7 8.5 0.1 4.4 4 0 0 4 4 4 0 A2L zinc ribbon domain C1_1 PF00130.22 gi|20091649|ref|NP_617724.1| - 6.8 6.7 10.4 0.44 10.5 1.1 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|20091649|ref|NP_617724.1| - 9.2 6.0 12.3 17 5.2 0.2 4.2 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit TPR_1 PF00515.28 gi|20091650|ref|NP_617725.1| - 5.2e-160 513.5 95.5 3.9e-10 39.1 0.1 24.8 25 0 0 25 25 25 24 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20091650|ref|NP_617725.1| - 7.5e-139 441.0 84.4 4.4e-08 32.7 0.1 25.0 25 0 0 25 25 25 21 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20091650|ref|NP_617725.1| - 6.4e-119 378.5 92.8 9.7e-09 34.8 0.2 24.3 24 0 0 24 24 24 23 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20091650|ref|NP_617725.1| - 5.9e-99 323.5 99.8 6.7e-08 32.1 0.4 23.5 11 8 14 25 25 23 20 TPR repeat TPR_16 PF13432.6 gi|20091650|ref|NP_617725.1| - 8.5e-86 282.4 36.1 2.4e-08 34.5 0.8 15.2 9 4 7 16 16 16 14 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20091650|ref|NP_617725.1| - 1.8e-75 249.1 21.2 6e-09 35.9 0.2 13.1 10 3 4 14 14 14 13 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20091650|ref|NP_617725.1| - 2e-75 242.9 35.3 2.9e-05 24.5 0.1 22.1 8 7 14 22 22 22 18 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20091650|ref|NP_617725.1| - 1.3e-67 219.5 75.3 4.5e-05 23.5 0.2 24.5 26 0 0 26 26 25 15 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20091650|ref|NP_617725.1| - 1.6e-63 210.9 66.8 2.2e-09 37.5 2.1 16.9 7 6 7 15 15 15 13 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20091650|ref|NP_617725.1| - 5.4e-59 196.6 54.9 1.6e-07 31.7 1.2 14.8 9 5 6 17 17 16 12 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20091650|ref|NP_617725.1| - 1.7e-50 165.4 61.1 0.0029 17.5 0.1 21.7 18 3 4 22 22 22 12 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20091650|ref|NP_617725.1| - 2.3e-32 111.1 58.3 1.9e-05 24.8 0.5 10.8 4 3 3 10 10 10 9 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|20091650|ref|NP_617725.1| - 1.2e-29 100.9 58.9 0.015 15.9 0.1 21.8 24 0 0 24 24 23 6 Tetratricopeptide repeat NARP1 PF12569.8 gi|20091650|ref|NP_617725.1| - 1.5e-26 93.4 26.0 0.0016 17.5 0.0 9.9 4 2 4 9 9 9 8 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|20091650|ref|NP_617725.1| - 3.6e-17 61.6 54.1 0.11 12.5 0.2 19.9 22 0 0 22 22 22 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20091650|ref|NP_617725.1| - 2.8e-14 52.9 55.0 0.07 13.2 0.0 18.4 22 0 0 22 22 19 4 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|20091650|ref|NP_617725.1| - 2.3e-12 47.5 32.8 0.0001 22.8 1.9 9.9 4 3 8 12 12 11 3 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|20091650|ref|NP_617725.1| - 1.9e-11 44.2 22.8 0.45 10.6 0.2 13.4 6 3 8 14 14 14 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|20091650|ref|NP_617725.1| - 1.3e-10 40.9 28.0 0.00067 19.0 3.7 9.2 4 3 3 7 7 7 3 Tetratricopeptide repeat MIT PF04212.18 gi|20091650|ref|NP_617725.1| - 5.2e-10 39.2 88.6 0.067 13.3 0.2 19.0 19 1 2 21 21 20 5 MIT (microtubule interacting and transport) domain SRP_TPR_like PF17004.5 gi|20091650|ref|NP_617725.1| - 1.6e-08 34.6 30.0 0.51 10.4 1.4 9.9 4 3 1 6 6 6 2 Putative TPR-like repeat Alkyl_sulf_dimr PF14863.6 gi|20091650|ref|NP_617725.1| - 1.5e-07 32.0 10.8 4.5 7.7 0.3 8.2 5 3 2 8 8 8 1 Alkyl sulfatase dimerisation NRBF2_MIT PF17169.4 gi|20091650|ref|NP_617725.1| - 5.2e-06 26.6 26.1 3.2 8.1 0.1 11.5 12 1 1 13 13 10 1 MIT domain of nuclear receptor-binding factor 2 TPR_5 PF12688.7 gi|20091650|ref|NP_617725.1| - 5.6e-06 26.6 22.8 0.00098 19.3 0.1 9.1 9 3 2 11 11 10 2 Tetratrico peptide repeat TPR_20 PF14561.6 gi|20091650|ref|NP_617725.1| - 1.9e-05 24.9 13.3 1.5 9.2 0.0 7.6 4 1 4 8 8 8 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|20091650|ref|NP_617725.1| - 0.00046 20.5 15.4 4.3 8.3 0.0 9.7 11 0 0 11 11 9 1 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|20091650|ref|NP_617725.1| - 0.001 17.9 9.5 0.097 11.4 0.1 6.3 5 2 3 9 9 9 1 Protein kinase G tetratricopeptide repeat GATase1_like PF07090.11 gi|20091650|ref|NP_617725.1| - 0.0063 16.0 1.3 2.8 7.3 0.1 3.7 3 2 2 5 5 4 1 Putative glutamine amidotransferase FAT PF02259.23 gi|20091650|ref|NP_617725.1| - 0.015 14.5 25.2 0.28 10.4 0.1 7.6 3 3 3 8 8 8 0 FAT domain ChAPs PF09295.10 gi|20091650|ref|NP_617725.1| - 0.1 11.6 7.0 6.6 5.6 0.0 5.5 6 1 0 7 7 7 0 ChAPs (Chs5p-Arf1p-binding proteins) PPR PF01535.20 gi|20091650|ref|NP_617725.1| - 0.15 12.4 24.9 15 6.1 0.1 12.0 15 0 0 15 15 13 0 PPR repeat DUF627 PF04781.12 gi|20091650|ref|NP_617725.1| - 0.28 11.2 7.5 30 4.7 0.0 6.3 6 1 1 8 8 7 0 Protein of unknown function (DUF627) Coatomer_E PF04733.14 gi|20091650|ref|NP_617725.1| - 0.34 10.3 18.1 0.8 9.1 0.4 6.6 5 2 1 7 7 7 0 Coatomer epsilon subunit HD PF01966.22 gi|20091651|ref|NP_617726.1| - 9.4e-08 32.3 0.1 1.6e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 HD domain NIF3 PF01784.18 gi|20091652|ref|NP_617727.1| - 3.4e-55 187.4 0.0 4.2e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) MULE PF10551.9 gi|20091653|ref|NP_617728.1| - 0.00029 21.2 0.0 0.00086 19.7 0.0 1.9 1 0 0 1 1 1 1 MULE transposase domain YdjO PF14169.6 gi|20091653|ref|NP_617728.1| - 0.054 13.2 0.2 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|20091653|ref|NP_617728.1| - 0.13 12.8 1.7 0.42 11.2 1.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|20091653|ref|NP_617728.1| - 0.16 11.7 1.3 0.48 10.2 1.3 1.8 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|20091653|ref|NP_617728.1| - 0.29 11.0 3.0 1.7 8.6 0.3 2.5 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.12 gi|20091653|ref|NP_617728.1| - 2.4 7.7 4.2 1.4 8.5 0.5 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Glyco_hydro_130 PF04041.13 gi|20091655|ref|NP_617730.1| - 2e-51 174.9 0.0 2.3e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_32N PF00251.20 gi|20091655|ref|NP_617730.1| - 0.013 15.0 0.0 0.24 10.9 0.0 2.0 1 1 1 2 2 2 0 Glycosyl hydrolases family 32 N-terminal domain E1-E2_ATPase PF00122.20 gi|20091657|ref|NP_617732.1| - 5.7e-55 185.6 1.0 5.7e-55 185.6 1.0 3.7 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|20091657|ref|NP_617732.1| - 8e-24 85.1 0.5 1.3e-23 84.4 0.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|20091657|ref|NP_617732.1| - 1.3e-15 56.8 0.8 2.8e-15 55.7 0.0 1.9 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|20091657|ref|NP_617732.1| - 9.7e-07 28.8 0.6 0.00017 21.4 0.3 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase BTRD1 PF17660.1 gi|20091657|ref|NP_617732.1| - 0.087 12.6 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 CNV-Replicase_N PF16688.5 gi|20091657|ref|NP_617732.1| - 0.16 12.3 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 Replicase polyprotein N-term from Coronavirus nsp1 Glyco_hydro_130 PF04041.13 gi|20091658|ref|NP_617733.1| - 2.4e-55 187.7 0.0 2.9e-55 187.5 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Imm35 PF15567.6 gi|20091658|ref|NP_617733.1| - 0.02 15.1 0.2 0.37 11.0 0.0 2.6 3 0 0 3 3 3 0 Immunity protein 35 WG_beta_rep PF14903.6 gi|20091658|ref|NP_617733.1| - 0.06 13.6 0.0 4.6 7.6 0.0 2.6 2 0 0 2 2 2 0 WG containing repeat DUF4096 PF13340.6 gi|20091659|ref|NP_617734.1| - 4.3e-31 107.0 1.1 7.9e-31 106.1 1.1 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20091659|ref|NP_617734.1| - 3.9e-26 92.0 0.1 5.2e-26 91.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20091659|ref|NP_617734.1| - 6.5e-14 52.1 0.1 1.2e-13 51.2 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|20091659|ref|NP_617734.1| - 0.025 14.6 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain rve PF00665.26 gi|20091660|ref|NP_617735.1| - 2.7e-13 50.2 0.0 4.3e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20091660|ref|NP_617735.1| - 2.6e-05 23.9 0.2 6.2e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20091660|ref|NP_617735.1| - 9.6e-05 22.1 0.1 0.005 16.6 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20091660|ref|NP_617735.1| - 0.034 13.6 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20091660|ref|NP_617735.1| - 0.04 14.1 0.1 0.1 12.7 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091660|ref|NP_617735.1| - 0.055 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20091660|ref|NP_617735.1| - 0.11 12.3 0.3 0.35 10.7 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20091660|ref|NP_617735.1| - 0.11 12.2 0.2 0.57 10.0 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment Na_Ala_symp PF01235.17 gi|20091661|ref|NP_617736.1| - 2.2e-140 468.4 27.1 2.7e-140 468.1 27.1 1.0 1 0 0 1 1 1 1 Sodium:alanine symporter family CARDB PF07705.11 gi|20091662|ref|NP_617737.1| - 5.4e-17 61.9 0.6 1.3e-05 25.3 0.2 4.3 4 0 0 4 4 4 4 CARDB NPCBM_assoc PF10633.9 gi|20091662|ref|NP_617737.1| - 1.1e-06 28.8 0.0 3.4 8.0 0.0 4.7 3 2 1 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|20091662|ref|NP_617737.1| - 7.7e-06 26.1 0.0 0.043 14.1 0.0 3.4 3 1 0 3 3 3 2 Domain of unknown function DUF11 DUF4352 PF11611.8 gi|20091662|ref|NP_617737.1| - 0.00064 20.0 0.6 0.0063 16.8 0.1 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4352) DUF2393 PF09624.10 gi|20091662|ref|NP_617737.1| - 0.00075 19.5 0.0 1.5 8.8 0.0 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2393) TRAP_beta PF05753.14 gi|20091662|ref|NP_617737.1| - 0.0026 17.2 0.2 0.56 9.6 0.0 3.2 3 0 0 3 3 3 1 Translocon-associated protein beta (TRAPB) Wzt_C PF14524.6 gi|20091662|ref|NP_617737.1| - 0.0044 17.1 0.4 0.5 10.4 0.1 3.2 2 1 1 3 3 3 1 Wzt C-terminal domain DUF4625 PF15418.6 gi|20091662|ref|NP_617737.1| - 0.012 15.9 0.0 0.17 12.1 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4625) N_BRCA1_IG PF16158.5 gi|20091662|ref|NP_617737.1| - 0.015 16.0 0.0 0.38 11.5 0.0 2.9 2 1 1 3 3 3 0 Ig-like domain from next to BRCA1 gene MG2 PF01835.19 gi|20091662|ref|NP_617737.1| - 0.076 13.5 0.0 0.45 11.0 0.0 2.3 2 0 0 2 2 2 0 MG2 domain Arrestin_C PF02752.22 gi|20091662|ref|NP_617737.1| - 0.08 13.4 0.0 2.3 8.7 0.0 2.5 2 1 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain Alpha_adaptinC2 PF02883.20 gi|20091662|ref|NP_617737.1| - 0.14 12.5 0.0 4.4 7.7 0.0 2.6 2 1 0 2 2 2 0 Adaptin C-terminal domain FtsX PF02687.21 gi|20091663|ref|NP_617738.1| - 7.5e-05 23.1 0.7 7.5e-05 23.1 0.7 3.2 3 0 0 3 3 3 2 FtsX-like permease family ABC_tran PF00005.27 gi|20091664|ref|NP_617739.1| - 9.6e-33 113.6 0.0 1.3e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20091664|ref|NP_617739.1| - 2.9e-07 30.6 0.0 0.011 15.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20091664|ref|NP_617739.1| - 3.2e-07 30.0 0.2 4.9e-06 26.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20091664|ref|NP_617739.1| - 1.9e-05 25.1 0.2 4e-05 24.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|20091664|ref|NP_617739.1| - 8.2e-05 23.2 0.2 0.019 15.5 0.1 2.3 1 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|20091664|ref|NP_617739.1| - 9.7e-05 22.0 0.1 0.0054 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20091664|ref|NP_617739.1| - 0.00017 21.2 0.1 0.00036 20.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|20091664|ref|NP_617739.1| - 0.00021 21.6 0.3 0.00097 19.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|20091664|ref|NP_617739.1| - 0.00056 19.9 0.1 0.00097 19.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|20091664|ref|NP_617739.1| - 0.00073 19.8 0.0 0.0019 18.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|20091664|ref|NP_617739.1| - 0.0026 17.5 0.5 0.0063 16.3 0.1 1.8 2 1 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|20091664|ref|NP_617739.1| - 0.0027 17.5 0.0 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|20091664|ref|NP_617739.1| - 0.0045 16.7 0.0 0.12 12.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|20091664|ref|NP_617739.1| - 0.0054 17.3 0.1 0.0068 16.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|20091664|ref|NP_617739.1| - 0.0054 16.9 0.1 0.013 15.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|20091664|ref|NP_617739.1| - 0.0081 15.6 0.0 0.026 13.9 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|20091664|ref|NP_617739.1| - 0.0081 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|20091664|ref|NP_617739.1| - 0.0088 16.3 0.2 0.14 12.4 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SRPRB PF09439.10 gi|20091664|ref|NP_617739.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit SRP54 PF00448.22 gi|20091664|ref|NP_617739.1| - 0.012 15.2 0.1 0.28 10.8 0.0 2.3 2 1 0 3 3 3 0 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|20091664|ref|NP_617739.1| - 0.013 14.6 0.0 0.019 14.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|20091664|ref|NP_617739.1| - 0.015 15.0 0.4 0.046 13.4 0.0 1.9 2 1 1 3 3 3 0 AAA domain ATPase PF06745.13 gi|20091664|ref|NP_617739.1| - 0.017 14.5 0.2 0.79 9.0 0.1 2.6 2 1 1 3 3 3 0 KaiC NACHT PF05729.12 gi|20091664|ref|NP_617739.1| - 0.027 14.4 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.20 gi|20091664|ref|NP_617739.1| - 0.031 13.4 0.1 0.033 13.3 0.1 1.2 1 1 0 1 1 1 0 G-protein alpha subunit ATPase_2 PF01637.18 gi|20091664|ref|NP_617739.1| - 0.036 14.0 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|20091664|ref|NP_617739.1| - 0.038 14.1 0.2 0.049 13.7 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|20091664|ref|NP_617739.1| - 0.041 13.9 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|20091664|ref|NP_617739.1| - 0.048 13.1 0.1 8.1 5.8 0.0 2.2 1 1 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|20091664|ref|NP_617739.1| - 0.055 12.7 0.1 0.098 11.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain RNA12 PF10443.9 gi|20091664|ref|NP_617739.1| - 0.059 12.1 0.0 0.092 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein MobB PF03205.14 gi|20091664|ref|NP_617739.1| - 0.086 12.7 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|20091664|ref|NP_617739.1| - 0.12 12.8 1.0 6.5 7.2 0.2 2.5 2 1 1 3 3 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|20091664|ref|NP_617739.1| - 0.17 12.3 0.1 0.8 10.1 0.1 2.0 2 1 0 2 2 2 0 RNA helicase AAA_3 PF07726.11 gi|20091666|ref|NP_617741.1| - 4.1e-63 211.1 0.1 6.6e-63 210.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|20091666|ref|NP_617741.1| - 4.7e-19 68.0 0.0 7.8e-19 67.3 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|20091666|ref|NP_617741.1| - 1e-09 38.5 0.0 2.7e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20091666|ref|NP_617741.1| - 1.8e-06 28.4 0.0 4e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|20091666|ref|NP_617741.1| - 3.8e-06 26.2 0.1 2.4e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|20091666|ref|NP_617741.1| - 0.00025 20.5 0.4 0.011 15.2 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|20091666|ref|NP_617741.1| - 0.0011 18.7 0.1 0.022 14.5 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|20091666|ref|NP_617741.1| - 0.0015 18.3 0.0 0.29 10.9 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|20091666|ref|NP_617741.1| - 0.012 16.0 0.0 0.41 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|20091666|ref|NP_617741.1| - 0.047 13.8 0.1 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) HTH_ABP1_N PF18107.1 gi|20091666|ref|NP_617741.1| - 0.14 11.9 0.1 0.4 10.4 0.1 1.8 1 0 0 1 1 1 0 Fission yeast centromere protein N-terminal domain DUF58 PF01882.18 gi|20091667|ref|NP_617742.1| - 5.4e-19 68.3 0.0 1e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|20091667|ref|NP_617742.1| - 6.9e-07 29.9 0.1 2e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|20091667|ref|NP_617742.1| - 7.9e-06 25.4 0.4 3.8e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|20091667|ref|NP_617742.1| - 0.073 13.3 0.2 0.18 12.0 0.2 1.9 1 1 0 1 1 1 0 von Willebrand factor type A domain BatA PF07584.11 gi|20091668|ref|NP_617743.1| - 1.6e-11 44.4 1.1 1.6e-11 44.4 1.1 2.0 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|20091668|ref|NP_617743.1| - 0.00052 20.6 0.7 0.0015 19.2 0.7 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|20091668|ref|NP_617743.1| - 0.018 14.5 0.1 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein GATase1_like PF07090.11 gi|20091668|ref|NP_617743.1| - 0.064 12.7 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 Putative glutamine amidotransferase Beta_protein PF14350.6 gi|20091668|ref|NP_617743.1| - 0.066 12.6 1.4 0.14 11.6 1.2 1.4 1 1 0 1 1 1 0 Beta protein GATase1_like PF07090.11 gi|20091669|ref|NP_617744.1| - 8.2e-13 48.4 0.0 9.9e-06 25.2 0.0 2.3 2 0 0 2 2 2 2 Putative glutamine amidotransferase VWA_2 PF13519.6 gi|20091669|ref|NP_617744.1| - 1.6e-08 35.1 0.1 4e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|20091669|ref|NP_617744.1| - 4e-05 23.9 0.1 0.00037 20.8 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain ThuA PF06283.11 gi|20091669|ref|NP_617744.1| - 0.00026 21.3 0.0 0.00086 19.6 0.0 1.8 1 1 0 1 1 1 1 Trehalose utilisation ABC_transp_aux PF09822.9 gi|20091669|ref|NP_617744.1| - 0.0024 17.4 0.1 0.0043 16.6 0.1 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system AI-2E_transport PF01594.16 gi|20091671|ref|NP_617746.1| - 1.5e-37 129.5 41.8 1.9e-37 129.1 41.8 1.0 1 0 0 1 1 1 1 AI-2E family transporter CybS PF05328.12 gi|20091671|ref|NP_617746.1| - 0.3 10.8 11.3 0.098 12.3 2.0 2.8 3 0 0 3 3 3 0 CybS, succinate dehydrogenase cytochrome B small subunit Hid1 PF12722.7 gi|20091671|ref|NP_617746.1| - 7.6 4.5 7.3 8.9 4.3 7.3 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein COG2 PF06148.11 gi|20091672|ref|NP_617747.1| - 0.044 13.9 0.7 0.096 12.8 0.3 1.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Takusan PF04822.13 gi|20091672|ref|NP_617747.1| - 0.058 13.3 2.4 0.15 11.9 0.4 2.4 2 0 0 2 2 2 0 Takusan DUF5418 PF17439.2 gi|20091673|ref|NP_617748.1| - 0.0065 16.6 0.1 0.0078 16.3 0.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5418) Lig_chan PF00060.26 gi|20091673|ref|NP_617748.1| - 0.19 11.6 0.3 0.24 11.2 0.3 1.2 1 0 0 1 1 1 0 Ligand-gated ion channel Radical_SAM PF04055.21 gi|20091674|ref|NP_617749.1| - 2.5e-13 50.8 0.0 4.9e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|20091674|ref|NP_617749.1| - 0.0012 19.0 0.0 0.0028 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Thi4 PF01946.17 gi|20091675|ref|NP_617750.1| - 8.4e-75 251.0 0.2 9.7e-75 250.8 0.2 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|20091675|ref|NP_617750.1| - 8.7e-08 31.9 0.5 1.2e-07 31.5 0.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|20091675|ref|NP_617750.1| - 1.6e-06 27.6 0.1 2e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|20091675|ref|NP_617750.1| - 4.8e-06 26.7 0.1 1.3e-05 25.3 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|20091675|ref|NP_617750.1| - 1.6e-05 24.2 0.8 0.00025 20.2 0.3 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|20091675|ref|NP_617750.1| - 0.00021 20.7 0.2 0.00025 20.4 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|20091675|ref|NP_617750.1| - 0.00077 18.3 0.1 0.001 17.9 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|20091675|ref|NP_617750.1| - 0.0058 15.8 0.6 0.0094 15.1 0.6 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|20091675|ref|NP_617750.1| - 0.036 13.6 1.8 0.19 11.3 0.7 2.0 1 1 1 2 2 2 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|20091675|ref|NP_617750.1| - 0.041 12.9 0.2 0.07 12.2 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|20091675|ref|NP_617750.1| - 0.13 12.8 0.3 0.37 11.4 0.3 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|20091675|ref|NP_617750.1| - 0.15 11.3 0.1 0.24 10.6 0.1 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase DUF5316 PF17247.2 gi|20091676|ref|NP_617751.1| - 2.9e-19 68.8 0.3 2.9e-19 68.8 0.3 1.5 2 0 0 2 2 2 1 Family of unknown function (DUF5316) META PF03724.16 gi|20091677|ref|NP_617752.1| - 1.2e-18 67.0 0.0 1.6e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 META domain DUF5640 PF18692.1 gi|20091677|ref|NP_617752.1| - 0.00064 19.7 0.1 0.001 19.1 0.1 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF5640) Lipocalin_4 PF13648.6 gi|20091677|ref|NP_617752.1| - 0.0044 18.0 0.4 0.0059 17.5 0.4 1.3 1 0 0 1 1 1 1 Lipocalin-like domain TIR_2 PF13676.6 gi|20091678|ref|NP_617753.1| - 7.3e-12 45.9 0.0 1.3e-11 45.1 0.0 1.4 1 0 0 1 1 1 1 TIR domain CpXC PF14353.6 gi|20091678|ref|NP_617753.1| - 0.0052 16.8 0.6 0.044 13.8 0.8 2.1 1 1 1 2 2 2 2 CpXC protein zf-ribbon_3 PF13248.6 gi|20091678|ref|NP_617753.1| - 0.016 14.6 1.5 0.39 10.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|20091678|ref|NP_617753.1| - 0.03 14.2 2.3 0.083 12.8 0.2 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.7 gi|20091678|ref|NP_617753.1| - 0.033 14.2 0.1 0.068 13.2 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon PyrI_C PF02748.15 gi|20091678|ref|NP_617753.1| - 0.034 14.0 3.8 0.64 10.0 0.2 2.4 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Mu-like_Com PF10122.9 gi|20091678|ref|NP_617753.1| - 0.064 12.7 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Mu-like prophage protein Com zf-RING_7 PF02591.15 gi|20091678|ref|NP_617753.1| - 0.16 12.1 0.9 26 5.1 0.0 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain TIR-like PF10137.9 gi|20091678|ref|NP_617753.1| - 0.21 11.6 0.0 0.37 10.8 0.0 1.4 1 1 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain zf-C2H2_10 PF16588.5 gi|20091678|ref|NP_617753.1| - 0.47 10.2 5.5 9 6.1 0.4 2.5 2 0 0 2 2 2 0 C2H2 zinc-finger TF_Zn_Ribbon PF08271.12 gi|20091678|ref|NP_617753.1| - 0.74 9.4 2.8 2.9 7.5 2.7 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|20091678|ref|NP_617753.1| - 0.96 9.3 3.9 1.5 8.7 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|20091678|ref|NP_617753.1| - 1.3 9.1 0.1 1.3 9.1 0.1 2.5 2 1 1 3 3 2 0 BED zinc finger zf-Di19 PF05605.12 gi|20091678|ref|NP_617753.1| - 1.7 9.0 5.1 4.2 7.7 3.2 2.4 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DDE_Tnp_1 PF01609.21 gi|20091681|ref|NP_617756.1| - 5.7e-18 65.4 0.2 9.5e-18 64.6 0.2 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|20091681|ref|NP_617756.1| - 2.2e-05 22.9 0.3 2.5e-05 22.7 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain group 1 BET PF17035.5 gi|20091681|ref|NP_617756.1| - 0.057 13.6 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Bromodomain extra-terminal - transcription regulation SMC_N PF02463.19 gi|20091681|ref|NP_617756.1| - 0.27 10.6 0.7 0.51 9.7 0.7 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain IZUMO PF15005.6 gi|20091681|ref|NP_617756.1| - 0.34 11.4 1.6 0.52 10.8 0.8 1.6 1 1 0 1 1 1 0 Izumo sperm-egg fusion, Ig domain-associated NADH5_C PF06455.11 gi|20091682|ref|NP_617757.1| - 0.0018 17.9 0.9 0.0019 17.9 0.9 1.1 1 0 0 1 1 1 1 NADH dehydrogenase subunit 5 C-terminus Aminotran_3 PF00202.21 gi|20091683|ref|NP_617758.1| - 3e-119 398.3 0.0 3.5e-119 398.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|20091683|ref|NP_617758.1| - 0.032 13.5 0.0 0.058 12.7 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase PG_binding_2 PF08823.11 gi|20091683|ref|NP_617758.1| - 0.15 12.4 0.0 29 5.1 0.0 2.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Aldedh PF00171.22 gi|20091684|ref|NP_617759.1| - 3.9e-182 605.9 0.0 4.8e-182 605.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|20091684|ref|NP_617759.1| - 0.064 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF1487 PF07368.11 gi|20091684|ref|NP_617759.1| - 0.18 11.2 0.0 8 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) Response_reg PF00072.24 gi|20091685|ref|NP_617760.1| - 5.2e-23 81.3 0.1 6.1e-23 81.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ThiG PF05690.14 gi|20091685|ref|NP_617760.1| - 0.12 11.6 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG GatB_N PF02934.15 gi|20091686|ref|NP_617761.1| - 5.1e-69 232.7 0.0 8.4e-69 232.0 0.0 1.4 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|20091686|ref|NP_617761.1| - 7.1e-19 68.2 0.5 7.1e-19 68.2 0.5 2.0 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|20091686|ref|NP_617761.1| - 4.5e-16 58.9 1.4 6.3e-14 52.0 0.2 2.6 2 0 0 2 2 2 2 GAD domain YqeY PF09424.10 gi|20091686|ref|NP_617761.1| - 8.6e-05 22.6 0.1 0.00027 21.0 0.1 1.8 1 1 0 1 1 1 1 Yqey-like protein DUF2999 PF11212.8 gi|20091686|ref|NP_617761.1| - 0.057 13.7 0.1 0.22 11.8 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) HTH_24 PF13412.6 gi|20091686|ref|NP_617761.1| - 0.13 11.9 0.6 4.9 6.8 0.1 3.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding DUF2014 PF09427.10 gi|20091688|ref|NP_617763.1| - 0.031 13.6 0.3 0.041 13.2 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2014) Usp PF00582.26 gi|20091690|ref|NP_617765.1| - 6.4e-33 114.2 0.1 7.1e-33 114.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|20091690|ref|NP_617765.1| - 0.063 13.3 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 DNA photolyase PGM_PMM_I PF02878.16 gi|20091690|ref|NP_617765.1| - 0.16 11.7 0.1 0.35 10.6 0.1 1.5 1 1 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Fer4 PF00037.27 gi|20091691|ref|NP_617766.1| - 1.2e-33 113.6 73.0 2.3e-07 30.4 2.7 8.6 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20091691|ref|NP_617766.1| - 1.3e-31 109.0 60.7 4.5e-11 43.2 7.5 4.9 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20091691|ref|NP_617766.1| - 2.1e-21 75.8 52.5 0.0005 20.2 6.6 6.9 6 2 0 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091691|ref|NP_617766.1| - 2.5e-20 72.4 66.5 6.4e-07 29.4 7.5 5.9 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20091691|ref|NP_617766.1| - 4.3e-20 71.6 69.4 4.3e-05 23.5 6.9 7.2 6 1 2 8 8 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091691|ref|NP_617766.1| - 2.4e-17 62.2 75.2 1.9e-05 24.5 2.6 8.5 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20091691|ref|NP_617766.1| - 1.9e-15 57.6 72.9 0.00082 20.3 0.7 8.2 5 3 3 8 8 7 6 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|20091691|ref|NP_617766.1| - 3.7e-12 45.6 80.3 8e-05 22.5 2.4 9.3 9 0 0 9 9 9 6 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20091691|ref|NP_617766.1| - 1.6e-09 38.1 65.5 0.00017 22.0 8.7 6.4 3 2 5 8 8 8 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20091691|ref|NP_617766.1| - 5.1e-08 33.3 63.9 0.012 16.1 9.9 7.7 4 2 4 8 8 8 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20091691|ref|NP_617766.1| - 0.00017 21.9 76.1 0.00082 19.7 3.7 8.5 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20091691|ref|NP_617766.1| - 0.04 14.7 63.5 0.31 11.8 1.0 8.7 9 1 0 9 9 8 0 4Fe-4S single cluster domain FlpD PF02662.16 gi|20091692|ref|NP_617767.1| - 1.4e-51 173.6 5.6 1.7e-50 170.1 0.1 4.0 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|20091692|ref|NP_617767.1| - 1.2e-17 64.2 0.1 5.3e-17 62.0 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|20091692|ref|NP_617767.1| - 1.1e-16 61.2 34.7 7.5e-05 23.2 7.8 5.5 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20091692|ref|NP_617767.1| - 4.4e-13 49.1 49.5 1.3e-08 34.8 11.8 6.0 7 0 0 7 7 6 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20091692|ref|NP_617767.1| - 6.1e-13 48.0 57.3 1.1e-06 28.1 3.4 6.3 6 1 0 6 6 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20091692|ref|NP_617767.1| - 6.6e-13 47.9 44.0 6.3e-06 26.0 2.2 6.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091692|ref|NP_617767.1| - 9.7e-13 48.0 35.8 2.6e-05 24.3 0.2 5.3 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091692|ref|NP_617767.1| - 3.4e-11 42.7 57.5 6.7e-06 25.9 3.5 6.2 7 0 0 7 7 5 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20091692|ref|NP_617767.1| - 7.9e-10 39.5 28.6 0.011 16.6 0.1 5.6 5 0 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20091692|ref|NP_617767.1| - 2.5e-09 37.2 42.0 1.3e-07 31.6 11.0 5.3 4 1 2 6 6 6 4 4Fe-4S dicluster domain DAO PF01266.24 gi|20091692|ref|NP_617767.1| - 1.5e-08 34.7 0.3 1.7e-05 24.6 0.5 2.6 3 0 0 3 3 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|20091692|ref|NP_617767.1| - 2.1e-07 30.5 0.0 1.4e-06 27.8 0.0 2.2 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|20091692|ref|NP_617767.1| - 6.4e-07 28.8 1.0 1.1e-06 28.0 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|20091692|ref|NP_617767.1| - 1.9e-06 28.2 25.2 0.025 15.0 0.1 5.4 5 1 0 5 5 5 2 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|20091692|ref|NP_617767.1| - 2.1e-06 28.2 0.7 0.00011 22.7 0.3 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|20091692|ref|NP_617767.1| - 2.3e-06 26.9 1.4 9.9e-06 24.9 0.6 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|20091692|ref|NP_617767.1| - 2.6e-06 27.0 0.1 4.8e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|20091692|ref|NP_617767.1| - 9.3e-06 25.8 0.0 2.2e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_17 PF13534.6 gi|20091692|ref|NP_617767.1| - 1.8e-05 25.2 30.7 0.008 16.7 3.9 4.6 4 0 0 4 4 4 3 4Fe-4S dicluster domain HI0933_like PF03486.14 gi|20091692|ref|NP_617767.1| - 0.00014 20.7 1.9 0.00031 19.6 1.5 1.7 1 1 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|20091692|ref|NP_617767.1| - 0.00018 20.9 0.6 0.0003 20.1 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_4 PF12800.7 gi|20091692|ref|NP_617767.1| - 0.00063 20.1 34.6 0.036 14.6 4.0 5.5 4 0 0 4 4 4 2 4Fe-4S binding domain Thi4 PF01946.17 gi|20091692|ref|NP_617767.1| - 0.00081 18.7 0.0 0.0017 17.6 0.0 1.5 1 0 0 1 1 1 1 Thi4 family K_oxygenase PF13434.6 gi|20091692|ref|NP_617767.1| - 0.0014 17.8 0.1 0.59 9.2 0.0 2.6 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|20091692|ref|NP_617767.1| - 0.0023 17.3 0.1 0.0068 15.7 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|20091692|ref|NP_617767.1| - 0.0023 17.3 0.1 0.026 13.8 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|20091692|ref|NP_617767.1| - 0.012 16.1 0.1 0.079 13.4 0.0 2.5 2 0 0 2 2 1 0 Putative NAD(P)-binding Fer4_13 PF13370.6 gi|20091692|ref|NP_617767.1| - 0.02 15.4 28.9 0.58 10.7 4.3 4.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Trp_halogenase PF04820.14 gi|20091692|ref|NP_617767.1| - 0.023 13.6 1.9 0.16 10.8 0.8 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|20091692|ref|NP_617767.1| - 0.029 14.4 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|20091692|ref|NP_617767.1| - 0.13 12.1 0.6 0.34 10.8 0.6 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|20091692|ref|NP_617767.1| - 0.27 10.2 1.5 1 8.3 0.6 2.3 3 0 0 3 3 3 0 Lycopene cyclase protein Fer4_15 PF13459.6 gi|20091692|ref|NP_617767.1| - 0.53 11.0 29.0 0.17 12.7 0.8 4.6 3 1 1 4 4 3 0 4Fe-4S single cluster domain Usher_TcfC PF17271.2 gi|20091693|ref|NP_617768.1| - 0.0031 16.4 1.6 0.0034 16.2 1.6 1.0 1 0 0 1 1 1 1 TcfC Usher-like barrel domain FeThRed_B PF02943.15 gi|20091694|ref|NP_617769.1| - 2.5e-26 91.8 1.5 2.9e-26 91.6 1.5 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Pyr_excise PF03013.14 gi|20091695|ref|NP_617770.1| - 1.6e-06 28.1 0.2 2.9e-06 27.3 0.2 1.6 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase Adeno_hexon PF01065.19 gi|20091695|ref|NP_617770.1| - 0.1 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Hexon, adenovirus major coat protein, N-terminal domain TrmB PF01978.19 gi|20091696|ref|NP_617771.1| - 5.7e-06 26.1 0.0 0.13 12.2 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB LIM PF00412.22 gi|20091696|ref|NP_617771.1| - 0.0014 18.9 0.4 0.0026 17.9 0.4 1.5 1 0 0 1 1 1 1 LIM domain Penicillinase_R PF03965.16 gi|20091696|ref|NP_617771.1| - 0.0029 18.0 0.0 0.072 13.5 0.0 2.1 2 0 0 2 2 2 1 Penicillinase repressor PadR PF03551.14 gi|20091696|ref|NP_617771.1| - 0.0059 16.6 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|20091696|ref|NP_617771.1| - 0.0067 16.5 0.0 0.058 13.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain XPA_N PF01286.18 gi|20091696|ref|NP_617771.1| - 0.022 14.8 0.2 0.046 13.8 0.2 1.5 1 0 0 1 1 1 0 XPA protein N-terminal HTH_IclR PF09339.10 gi|20091696|ref|NP_617771.1| - 0.024 14.4 0.0 0.074 12.9 0.0 2.0 2 1 0 2 2 2 0 IclR helix-turn-helix domain Cdc6_C PF09079.11 gi|20091696|ref|NP_617771.1| - 0.13 12.3 0.1 0.88 9.6 0.0 2.1 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_Crp_2 PF13545.6 gi|20091696|ref|NP_617771.1| - 0.14 12.2 0.0 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|20091696|ref|NP_617771.1| - 0.15 11.6 0.1 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding zf-dskA_traR PF01258.17 gi|20091696|ref|NP_617771.1| - 0.87 9.6 3.8 2.9 7.9 3.8 1.8 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger CMD PF02627.20 gi|20091697|ref|NP_617772.1| - 5.8e-17 61.5 0.0 7e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family FeS PF04060.13 gi|20091699|ref|NP_617774.1| - 8.7e-14 50.9 2.8 8.7e-14 50.9 2.8 2.2 2 0 0 2 2 2 1 Putative Fe-S cluster Fer4 PF00037.27 gi|20091699|ref|NP_617774.1| - 2.1e-06 27.3 22.2 9e-06 25.3 3.8 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091699|ref|NP_617774.1| - 3.8e-05 23.7 14.3 0.00053 20.0 9.6 3.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20091699|ref|NP_617774.1| - 0.00012 22.6 17.2 0.0059 17.2 3.4 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091699|ref|NP_617774.1| - 0.0005 20.2 15.7 0.0013 18.9 7.9 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20091699|ref|NP_617774.1| - 0.00051 20.1 13.5 0.0035 17.4 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20091699|ref|NP_617774.1| - 0.0009 19.9 3.2 0.0097 16.6 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|20091699|ref|NP_617774.1| - 0.0013 19.1 1.2 0.0013 19.1 1.2 3.6 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20091699|ref|NP_617774.1| - 0.0016 18.5 2.6 0.0016 18.5 2.6 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20091699|ref|NP_617774.1| - 0.002 18.1 3.5 0.002 18.1 3.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain YhfH PF14149.6 gi|20091699|ref|NP_617774.1| - 0.0074 16.2 2.5 0.0074 16.2 2.5 2.0 2 0 0 2 2 1 1 YhfH-like protein Fer4_17 PF13534.6 gi|20091699|ref|NP_617774.1| - 0.015 15.8 12.5 0.045 14.3 7.3 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20091699|ref|NP_617774.1| - 0.022 15.2 6.5 0.022 15.2 6.5 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20091699|ref|NP_617774.1| - 0.13 13.3 7.4 0.13 13.3 7.4 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20091699|ref|NP_617774.1| - 0.32 12.0 20.2 0.17 12.8 2.3 3.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|20091699|ref|NP_617774.1| - 0.91 10.1 14.4 2.1 8.9 8.0 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TPP_enzyme_M PF00205.22 gi|20091700|ref|NP_617775.1| - 5e-05 23.0 0.5 0.0043 16.8 0.2 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Cas_GSU0053 PF09617.10 gi|20091700|ref|NP_617775.1| - 0.065 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein GSU0053 (Cas_GSU0053) DUF3443 PF11925.8 gi|20091700|ref|NP_617775.1| - 0.13 11.1 1.6 3.6 6.3 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3443) Molydop_binding PF01568.21 gi|20091701|ref|NP_617776.1| - 4e-17 62.2 0.0 9e-17 61.1 0.0 1.5 1 1 1 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|20091701|ref|NP_617776.1| - 0.0038 17.4 0.0 0.0058 16.8 0.0 1.4 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain SAM_1 PF00536.30 gi|20091701|ref|NP_617776.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) RNA_pol_A_CTD PF03118.15 gi|20091702|ref|NP_617777.1| - 0.089 12.6 0.8 0.13 12.0 0.8 1.2 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Zip PF02535.22 gi|20091703|ref|NP_617778.1| - 2.3e-20 73.1 16.6 1.8e-15 57.0 9.3 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter EpuA PF11772.8 gi|20091703|ref|NP_617778.1| - 0.13 12.0 2.4 0.83 9.4 0.2 2.9 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta Ferritin PF00210.24 gi|20091704|ref|NP_617779.1| - 2.4e-22 79.4 0.0 3.1e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|20091704|ref|NP_617779.1| - 0.11 12.7 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Ferritin-like domain Protoglobin PF11563.8 gi|20091705|ref|NP_617780.1| - 1.7e-39 135.2 0.0 2.1e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 Protoglobin Methyltransf_11 PF08241.12 gi|20091706|ref|NP_617781.1| - 1.8e-11 44.6 0.0 5e-11 43.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091706|ref|NP_617781.1| - 6.8e-07 29.9 0.2 1.7e-06 28.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091706|ref|NP_617781.1| - 2.3e-06 27.1 0.0 2.9e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|20091706|ref|NP_617781.1| - 4.4e-06 26.6 0.0 6.5e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091706|ref|NP_617781.1| - 3.2e-05 24.6 0.0 7.3e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091706|ref|NP_617781.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain SbmA_BacA PF05992.12 gi|20091706|ref|NP_617781.1| - 0.24 10.8 0.0 0.28 10.6 0.0 1.1 1 0 0 1 1 1 0 SbmA/BacA-like family NosD PF05048.13 gi|20091707|ref|NP_617782.1| - 2.5e-108 360.9 134.9 4.8e-57 193.0 45.3 4.2 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20091707|ref|NP_617782.1| - 1.5e-67 226.4 136.9 3.5e-22 78.9 26.4 4.5 1 1 3 4 4 4 4 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|20091707|ref|NP_617782.1| - 0.85 9.4 72.6 0.033 14.0 8.0 6.4 2 1 3 6 6 6 0 Pectate lyase superfamily protein NosD PF05048.13 gi|20091708|ref|NP_617783.1| - 2e-82 276.1 129.5 3.6e-48 164.0 34.1 4.4 2 1 2 4 4 4 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20091708|ref|NP_617783.1| - 4.1e-46 156.7 118.3 2e-22 79.8 32.5 4.0 3 1 2 5 5 5 3 Right handed beta helix region PKD PF00801.20 gi|20091708|ref|NP_617783.1| - 2.3e-17 62.6 9.0 1.2e-09 37.8 0.6 3.0 2 0 0 2 2 2 2 PKD domain PGF-CTERM PF18204.1 gi|20091708|ref|NP_617783.1| - 0.00053 19.9 0.0 0.00053 19.9 0.0 1.7 2 0 0 2 2 2 1 PGF-CTERM motif PKD_3 PF16820.5 gi|20091708|ref|NP_617783.1| - 0.00083 19.1 1.4 0.075 12.8 0.2 2.8 2 0 0 2 2 2 1 PKD-like domain Y_Y_Y PF07495.13 gi|20091708|ref|NP_617783.1| - 1.3 9.1 14.6 0.083 12.9 1.0 4.9 5 0 0 5 5 5 0 Y_Y_Y domain Pectate_lyase_3 PF12708.7 gi|20091708|ref|NP_617783.1| - 1.5 8.7 67.2 0.1 12.5 21.8 6.0 2 2 4 6 6 6 0 Pectate lyase superfamily protein DUF4781 PF16013.5 gi|20091709|ref|NP_617784.1| - 0.089 11.6 3.0 0.13 11.1 3.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4781) Hist_deacetyl PF00850.19 gi|20091710|ref|NP_617785.1| - 3.4e-63 214.0 0.0 5.4e-63 213.3 0.0 1.4 1 1 0 1 1 1 1 Histone deacetylase domain NESP55 PF06390.12 gi|20091710|ref|NP_617785.1| - 0.085 12.5 4.4 0.14 11.7 4.4 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) zf-TFIIB PF13453.6 gi|20091710|ref|NP_617785.1| - 0.22 10.9 1.4 4.1 6.8 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger Hydantoinase_A PF01968.18 gi|20091711|ref|NP_617786.1| - 7.5e-52 176.4 4.8 8.2e-47 159.9 1.6 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20091711|ref|NP_617786.1| - 5.8e-33 114.1 2.8 4.2e-29 101.5 1.0 3.5 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|20091711|ref|NP_617786.1| - 2.7e-06 27.1 1.5 0.00047 19.8 0.0 3.5 2 1 2 4 4 4 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|20091711|ref|NP_617786.1| - 5.6e-05 21.9 0.7 0.041 12.5 0.0 2.4 2 0 0 2 2 2 2 MutL protein DDR PF08841.10 gi|20091711|ref|NP_617786.1| - 7e-05 22.0 4.5 0.049 12.6 0.2 3.3 3 0 0 3 3 3 2 Diol dehydratase reactivase ATPase-like domain FtsA PF14450.6 gi|20091711|ref|NP_617786.1| - 0.00019 21.8 3.5 0.37 11.2 0.1 3.0 3 0 0 3 3 3 2 Cell division protein FtsA EutA PF06277.11 gi|20091711|ref|NP_617786.1| - 0.0012 17.8 1.6 0.87 8.4 0.1 2.6 3 0 0 3 3 3 2 Ethanolamine utilisation protein EutA MreB_Mbl PF06723.13 gi|20091711|ref|NP_617786.1| - 0.0075 15.1 0.3 0.0075 15.1 0.3 2.6 3 0 0 3 3 3 1 MreB/Mbl protein Ppx-GppA PF02541.16 gi|20091711|ref|NP_617786.1| - 0.01 15.3 0.4 0.37 10.2 0.0 2.6 2 0 0 2 2 2 0 Ppx/GppA phosphatase family StbA PF06406.11 gi|20091711|ref|NP_617786.1| - 0.016 14.5 0.9 1.3 8.2 0.0 3.1 3 0 0 3 3 3 0 StbA protein PAS_3 PF08447.12 gi|20091712|ref|NP_617787.1| - 2.5e-40 136.7 0.4 9.1e-22 77.2 0.5 3.6 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.12 gi|20091712|ref|NP_617787.1| - 5.6e-32 109.7 3.5 1.6e-31 108.2 3.3 2.0 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.10 gi|20091712|ref|NP_617787.1| - 8.1e-27 93.6 0.0 2.1e-11 44.1 0.0 4.6 4 1 0 4 4 4 4 PAS fold PAS PF00989.25 gi|20091712|ref|NP_617787.1| - 7.5e-24 83.9 0.0 7.3e-07 29.2 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|20091712|ref|NP_617787.1| - 8.9e-19 67.7 0.1 1.7e-07 31.5 0.1 4.4 4 0 0 4 4 4 3 PAS domain GAF_3 PF13492.6 gi|20091712|ref|NP_617787.1| - 1.5e-11 44.8 0.0 3e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|20091712|ref|NP_617787.1| - 3.7e-07 30.5 0.0 7.9e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|20091712|ref|NP_617787.1| - 2.3e-06 28.1 0.0 8.1e-06 26.3 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|20091712|ref|NP_617787.1| - 7.1e-06 26.7 0.0 1.6e-05 25.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|20091712|ref|NP_617787.1| - 1.4e-05 25.0 0.0 0.44 10.6 0.0 4.4 4 0 0 4 4 4 1 PAS domain HWE_HK PF07536.14 gi|20091712|ref|NP_617787.1| - 7.2e-05 23.4 0.1 0.00016 22.3 0.1 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.6 gi|20091712|ref|NP_617787.1| - 0.0013 18.9 0.0 0.57 10.3 0.1 3.7 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|20091712|ref|NP_617787.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain FAD_binding_3 PF01494.19 gi|20091714|ref|NP_617789.1| - 2.6e-13 50.0 5.1 1.6e-08 34.2 1.0 3.7 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|20091714|ref|NP_617789.1| - 6.3e-10 39.0 0.1 8.3e-10 38.6 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|20091714|ref|NP_617789.1| - 1.6e-07 30.8 0.0 2.9e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|20091714|ref|NP_617789.1| - 3.3e-07 29.8 2.8 7.8e-06 25.3 0.7 2.6 2 2 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|20091714|ref|NP_617789.1| - 1.2e-06 28.4 3.9 1.1e-05 25.2 0.9 2.3 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|20091714|ref|NP_617789.1| - 4.1e-06 26.9 0.2 1e-05 25.6 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|20091714|ref|NP_617789.1| - 9.8e-06 24.5 0.2 1.6e-05 23.8 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|20091714|ref|NP_617789.1| - 0.00022 20.4 0.5 0.00038 19.7 0.5 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|20091714|ref|NP_617789.1| - 0.00028 20.1 0.0 0.013 14.5 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|20091714|ref|NP_617789.1| - 0.00038 19.4 0.3 0.096 11.5 0.5 2.9 2 1 1 3 3 3 1 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|20091714|ref|NP_617789.1| - 0.0027 16.9 0.8 0.0055 15.8 0.8 1.5 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|20091714|ref|NP_617789.1| - 0.031 13.6 2.0 0.031 13.6 0.3 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|20091714|ref|NP_617789.1| - 0.041 14.4 0.7 0.19 12.3 0.2 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|20091714|ref|NP_617789.1| - 0.079 12.8 0.3 0.13 12.1 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|20091714|ref|NP_617789.1| - 0.18 12.3 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding PAPS_reduct PF01507.19 gi|20091715|ref|NP_617790.1| - 9.7e-40 136.4 0.0 2.1e-39 135.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.27 gi|20091715|ref|NP_617790.1| - 5.1e-08 32.4 2.6 5.1e-08 32.4 2.6 3.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091715|ref|NP_617790.1| - 9.5e-07 28.8 11.7 9.5e-07 28.8 11.7 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091715|ref|NP_617790.1| - 4.6e-06 26.5 14.2 8.6e-05 22.4 2.4 3.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20091715|ref|NP_617790.1| - 6.5e-06 26.2 12.9 6.5e-06 26.2 12.9 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20091715|ref|NP_617790.1| - 7e-05 23.0 3.4 7e-05 23.0 3.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20091715|ref|NP_617790.1| - 7.2e-05 22.8 0.4 7.2e-05 22.8 0.4 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20091715|ref|NP_617790.1| - 0.00011 22.7 13.9 0.00011 22.7 13.9 2.8 3 1 0 3 3 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20091715|ref|NP_617790.1| - 0.00015 21.7 21.5 0.00092 19.2 2.2 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20091715|ref|NP_617790.1| - 0.0012 19.2 17.6 0.019 15.4 0.3 3.9 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091715|ref|NP_617790.1| - 0.0017 19.2 13.3 0.0071 17.3 2.9 4.1 2 2 2 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|20091715|ref|NP_617790.1| - 0.0028 18.1 12.8 0.039 14.5 1.8 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain NAD_synthase PF02540.17 gi|20091715|ref|NP_617790.1| - 0.0079 15.3 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Fer4_4 PF12800.7 gi|20091715|ref|NP_617790.1| - 0.016 15.7 3.4 0.016 15.7 3.4 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20091715|ref|NP_617790.1| - 0.029 15.2 0.2 0.029 15.2 0.2 4.0 4 1 0 4 4 2 0 4Fe-4S dicluster domain ATP_bind_3 PF01171.20 gi|20091715|ref|NP_617790.1| - 0.057 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Fer4_3 PF12798.7 gi|20091715|ref|NP_617790.1| - 0.17 12.9 17.8 0.074 14.0 5.2 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain Spem1 PF15670.5 gi|20091715|ref|NP_617790.1| - 0.24 10.9 1.9 0.37 10.3 1.9 1.2 1 0 0 1 1 1 0 Spermatid maturation protein 1 AI-2E_transport PF01594.16 gi|20091716|ref|NP_617791.1| - 8e-42 143.5 42.4 9.7e-42 143.3 42.4 1.0 1 0 0 1 1 1 1 AI-2E family transporter PetG PF02529.15 gi|20091716|ref|NP_617791.1| - 0.41 10.5 4.9 4.1 7.3 0.2 3.2 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 tRNA-Thr_ED PF08915.11 gi|20091717|ref|NP_617792.1| - 3.8e-53 179.2 0.4 7e-53 178.4 0.4 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|20091717|ref|NP_617792.1| - 4.2e-18 65.3 2.5 4.4e-18 65.2 0.6 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|20091717|ref|NP_617792.1| - 2e-16 60.5 0.4 3.2e-16 59.8 0.4 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Heme_oxygenase PF01126.20 gi|20091717|ref|NP_617792.1| - 0.03 14.1 0.1 0.067 13.0 0.1 1.5 1 0 0 1 1 1 0 Heme oxygenase PTPlike_phytase PF14566.6 gi|20091717|ref|NP_617792.1| - 0.6 10.2 4.8 6.1 6.9 0.0 3.4 3 1 0 4 4 4 0 Inositol hexakisphosphate ResIII PF04851.15 gi|20091718|ref|NP_617793.1| - 5.9e-17 62.2 0.1 9.8e-17 61.5 0.1 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|20091718|ref|NP_617793.1| - 9.6e-08 32.4 0.0 1.9e-06 28.2 0.0 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|20091718|ref|NP_617793.1| - 3.7e-05 23.6 0.0 0.0003 20.6 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase SWI2_SNF2 PF18766.1 gi|20091718|ref|NP_617793.1| - 7.5e-05 22.5 0.0 0.00013 21.7 0.0 1.3 1 0 0 1 1 1 1 SWI2/SNF2 ATPase AAA_22 PF13401.6 gi|20091718|ref|NP_617793.1| - 0.019 15.3 0.1 0.074 13.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain Helicase_C_2 PF13307.6 gi|20091718|ref|NP_617793.1| - 0.062 13.5 0.1 5 7.3 0.0 3.2 2 1 1 3 3 3 0 Helicase C-terminal domain DUF2202 PF09968.9 gi|20091718|ref|NP_617793.1| - 0.14 12.0 1.1 0.91 9.4 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized protein domain (DUF2202) DUF4834 PF16118.5 gi|20091719|ref|NP_617794.1| - 0.23 12.5 2.5 0.38 11.7 2.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) Ndc1_Nup PF09531.10 gi|20091719|ref|NP_617794.1| - 2.1 6.9 10.0 2.4 6.7 10.0 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Spo7 PF03907.13 gi|20091719|ref|NP_617794.1| - 4.5 6.7 7.2 1.6 8.1 4.5 1.6 1 1 0 1 1 1 0 Spo7-like protein APH PF01636.23 gi|20091720|ref|NP_617795.1| - 1.1e-11 45.2 0.0 1.5e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|20091720|ref|NP_617795.1| - 5.3e-06 26.2 0.4 1.3e-05 24.9 0.4 1.7 1 1 0 1 1 1 1 Choline/ethanolamine kinase DUF4131 PF13567.6 gi|20091721|ref|NP_617796.1| - 0.072 12.7 0.2 0.072 12.7 0.2 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) DUF2781 PF10914.8 gi|20091721|ref|NP_617796.1| - 0.29 11.5 5.8 0.39 11.1 2.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2781) DUF4231 PF14015.6 gi|20091721|ref|NP_617796.1| - 0.42 11.1 2.4 16 6.0 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF4231) DUF3995 PF13160.6 gi|20091721|ref|NP_617796.1| - 0.47 10.8 5.1 6.4 7.2 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3995) SAYSvFN PF10260.9 gi|20091721|ref|NP_617796.1| - 7.7 6.5 8.5 1.7 8.6 0.1 3.5 3 0 0 3 3 3 0 Uncharacterized conserved domain (SAYSvFN) Zn_protease PF05618.11 gi|20091722|ref|NP_617797.1| - 7.9e-21 74.4 0.1 2.9e-20 72.5 0.1 1.7 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.21 gi|20091722|ref|NP_617797.1| - 9.2e-05 22.1 0.1 0.0023 17.5 0.1 2.1 1 1 0 1 1 1 1 Polypeptide deformylase TetR_N PF00440.23 gi|20091723|ref|NP_617798.1| - 1.2e-17 63.5 0.1 3.4e-17 62.0 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20091723|ref|NP_617798.1| - 0.0033 17.6 0.0 0.006 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_29 PF17938.1 gi|20091723|ref|NP_617798.1| - 0.027 14.6 0.0 0.059 13.5 0.0 1.6 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|20091723|ref|NP_617798.1| - 0.065 13.6 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|20091723|ref|NP_617798.1| - 0.12 12.6 0.4 0.31 11.3 0.0 2.1 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain LCM PF04072.14 gi|20091724|ref|NP_617799.1| - 3.4e-55 186.9 0.0 1.4e-54 184.9 0.0 1.7 2 0 0 2 2 2 1 Leucine carboxyl methyltransferase LCM PF04072.14 gi|20091725|ref|NP_617800.1| - 1.3e-54 185.0 0.0 1.8e-54 184.6 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Methyltransf_11 PF08241.12 gi|20091726|ref|NP_617801.1| - 1e-11 45.3 0.0 1.8e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091726|ref|NP_617801.1| - 1.1e-10 42.1 0.0 2.9e-10 40.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091726|ref|NP_617801.1| - 2.2e-08 34.8 0.0 8.8e-08 32.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091726|ref|NP_617801.1| - 2.8e-08 33.7 0.0 4.5e-08 33.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091726|ref|NP_617801.1| - 0.00068 19.5 0.0 0.00071 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20091726|ref|NP_617801.1| - 0.014 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|20091727|ref|NP_617802.1| - 0.00076 20.1 0.0 0.054 14.2 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091727|ref|NP_617802.1| - 0.033 14.9 0.0 1.7 9.4 0.0 2.7 3 0 0 3 3 3 0 Methyltransferase domain Transposase_20 PF02371.16 gi|20091728|ref|NP_617803.1| - 5.9e-29 100.2 0.0 1.4e-28 99.0 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|20091728|ref|NP_617803.1| - 1e-16 61.2 0.6 4.6e-16 59.1 0.0 2.2 3 0 0 3 3 3 1 Transposase 5_3_exonuc PF01367.20 gi|20091728|ref|NP_617803.1| - 0.21 12.2 3.1 29 5.4 0.0 3.4 2 1 1 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold 23S_rRNA_IVP PF05635.11 gi|20091728|ref|NP_617803.1| - 0.66 10.3 5.8 0.38 11.1 0.2 2.7 3 0 0 3 3 3 0 23S rRNA-intervening sequence protein CCP_MauG PF03150.14 gi|20091729|ref|NP_617804.1| - 2.3e-46 158.1 0.0 1.9e-43 148.7 0.0 2.2 2 0 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.21 gi|20091729|ref|NP_617804.1| - 7.9e-06 26.9 0.0 0.012 16.8 0.1 3.3 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|20091729|ref|NP_617804.1| - 0.0022 18.3 0.0 2.8 8.3 0.0 3.2 3 0 0 3 3 3 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 gi|20091729|ref|NP_617804.1| - 0.0027 17.4 0.9 2.1 8.1 0.1 2.3 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) POR PF01558.18 gi|20091730|ref|NP_617805.1| - 9.7e-38 130.0 1.3 1.2e-37 129.7 0.5 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|20091730|ref|NP_617805.1| - 3.2e-23 82.2 0.2 6.3e-23 81.3 0.1 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|20091731|ref|NP_617806.1| - 1.8e-52 178.4 0.0 2.2e-52 178.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|20091731|ref|NP_617806.1| - 1.1e-27 96.3 0.0 1.9e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|20091731|ref|NP_617806.1| - 1.9e-05 24.6 0.0 3.1e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|20091731|ref|NP_617806.1| - 0.0016 18.1 0.1 0.0025 17.4 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.7 gi|20091732|ref|NP_617807.1| - 1.6e-09 38.2 8.1 2.2e-09 37.7 8.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091732|ref|NP_617807.1| - 2.5e-07 30.7 18.5 1.9e-05 24.7 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20091732|ref|NP_617807.1| - 4.2e-07 30.0 5.2 6.9e-07 29.3 5.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20091732|ref|NP_617807.1| - 2.1e-06 27.5 10.8 0.0025 17.8 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20091732|ref|NP_617807.1| - 5.8e-06 26.7 6.8 0.015 15.9 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20091732|ref|NP_617807.1| - 6.6e-06 26.2 8.2 0.0092 16.4 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20091732|ref|NP_617807.1| - 1.3e-05 24.8 13.1 0.00015 21.4 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091732|ref|NP_617807.1| - 1.4e-05 25.1 9.2 4.9e-05 23.4 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091732|ref|NP_617807.1| - 0.00017 21.5 11.4 0.011 15.7 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20091732|ref|NP_617807.1| - 0.00017 22.3 4.1 0.18 12.7 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091732|ref|NP_617807.1| - 0.00043 21.2 11.1 0.0075 17.2 1.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|20091732|ref|NP_617807.1| - 0.0059 17.0 11.5 0.2 12.1 12.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20091732|ref|NP_617807.1| - 0.017 15.6 12.0 0.16 12.6 2.9 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20091732|ref|NP_617807.1| - 0.046 14.7 15.8 0.17 12.9 4.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20091732|ref|NP_617807.1| - 0.15 12.8 7.5 2.6 8.8 0.9 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|20091732|ref|NP_617807.1| - 1.4 9.1 6.6 4.3 7.6 1.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AMP-binding PF00501.28 gi|20091733|ref|NP_617808.1| - 1.5e-73 247.8 0.0 1.8e-73 247.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|20091733|ref|NP_617808.1| - 1.4e-23 83.7 0.1 3e-23 82.6 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Glyco_transf_17 PF04724.13 gi|20091734|ref|NP_617809.1| - 0.0037 16.3 0.1 1.5 7.8 0.0 2.0 1 1 1 2 2 2 2 Glycosyltransferase family 17 DUF1062 PF06353.12 gi|20091734|ref|NP_617809.1| - 3.7 8.4 6.6 6.7 7.5 0.6 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1062) Tet_res_leader PF08050.12 gi|20091734|ref|NP_617809.1| - 6.6 6.7 12.6 76 3.3 0.1 4.3 4 0 0 4 4 4 0 Tetracycline resistance leader peptide Cupin_2 PF07883.11 gi|20091735|ref|NP_617810.1| - 9.3e-17 60.5 0.3 2.7e-16 59.0 0.1 1.8 1 1 1 2 2 2 1 Cupin domain HTH_19 PF12844.7 gi|20091735|ref|NP_617810.1| - 1.5e-09 37.7 0.0 3.3e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|20091735|ref|NP_617810.1| - 7.9e-09 35.5 0.0 1.5e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|20091735|ref|NP_617810.1| - 1.4e-07 31.7 0.0 2.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|20091735|ref|NP_617810.1| - 0.0017 18.3 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|20091735|ref|NP_617810.1| - 0.0019 18.1 0.1 0.0036 17.2 0.1 1.5 1 1 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|20091735|ref|NP_617810.1| - 0.003 17.2 0.0 0.0053 16.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|20091735|ref|NP_617810.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.5 1 1 0 1 1 1 0 Mif2/CENP-C like HTH_DeoR PF08220.12 gi|20091735|ref|NP_617810.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain NosD PF05048.13 gi|20091736|ref|NP_617811.1| - 1.4e-32 112.9 17.1 1.4e-32 112.9 17.1 1.8 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PKD PF00801.20 gi|20091736|ref|NP_617811.1| - 2e-20 72.4 0.5 2.3e-11 43.4 0.3 2.6 2 0 0 2 2 2 2 PKD domain Beta_helix PF13229.6 gi|20091736|ref|NP_617811.1| - 2.2e-10 40.6 14.5 7.1e-10 39.0 14.5 1.8 1 0 0 1 1 1 1 Right handed beta helix region Y_Y_Y PF07495.13 gi|20091736|ref|NP_617811.1| - 0.31 11.0 3.5 3.9 7.5 0.0 3.0 3 0 0 3 3 3 0 Y_Y_Y domain Phosphodiest PF01663.22 gi|20091737|ref|NP_617812.1| - 1.1e-14 54.9 0.1 2.6e-13 50.3 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|20091737|ref|NP_617812.1| - 1.1e-11 44.8 0.0 1.4e-10 41.1 0.0 2.4 2 1 0 2 2 2 1 Sulfatase Metalloenzyme PF01676.18 gi|20091737|ref|NP_617812.1| - 4.8e-08 32.7 0.2 1.6e-07 30.9 0.2 1.9 1 1 0 1 1 1 1 Metalloenzyme superfamily Tox-HDC PF15656.6 gi|20091737|ref|NP_617812.1| - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Toxin with a H, D/N and C signature OppC_N PF12911.7 gi|20091738|ref|NP_617813.1| - 0.31 11.1 0.2 0.31 11.1 0.2 1.9 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Ntox47 PF15540.6 gi|20091739|ref|NP_617814.1| - 0.02 15.2 0.1 0.063 13.6 0.1 1.8 2 0 0 2 2 2 0 Bacterial toxin 47 PEPCK_N PF17297.2 gi|20091739|ref|NP_617814.1| - 0.11 12.1 0.2 0.16 11.6 0.2 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase N-terminal domain DUF5320 PF17253.2 gi|20091739|ref|NP_617814.1| - 0.14 13.3 3.9 9.1 7.4 4.9 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5320) PepSY PF03413.19 gi|20091739|ref|NP_617814.1| - 0.15 12.7 4.0 0.57 10.8 4.0 1.9 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain VIT PF08487.10 gi|20091739|ref|NP_617814.1| - 0.16 12.2 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 Vault protein inter-alpha-trypsin domain DUF4577 PF15145.6 gi|20091740|ref|NP_617815.1| - 0.0018 18.3 0.1 0.0019 18.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4577) KxDL PF10241.9 gi|20091740|ref|NP_617815.1| - 0.077 13.3 0.0 0.086 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein TraL PF07178.11 gi|20091740|ref|NP_617815.1| - 0.09 13.2 0.5 0.11 13.0 0.5 1.1 1 0 0 1 1 1 0 TraL protein Pox_LP_H2 PF03356.15 gi|20091740|ref|NP_617815.1| - 0.095 12.6 0.0 0.098 12.5 0.0 1.1 1 0 0 1 1 1 0 Viral late protein H2 HTH_5 PF01022.20 gi|20091741|ref|NP_617816.1| - 4.3e-14 52.1 0.4 6.1e-14 51.6 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20091741|ref|NP_617816.1| - 2.1e-11 43.7 0.4 3.1e-11 43.2 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|20091741|ref|NP_617816.1| - 1.1e-06 28.4 0.2 1.5e-06 28.0 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|20091741|ref|NP_617816.1| - 1.7e-06 27.9 0.8 2.2e-05 24.3 0.8 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|20091741|ref|NP_617816.1| - 5.7e-06 26.1 0.2 7.1e-06 25.8 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20091741|ref|NP_617816.1| - 6e-06 25.7 0.2 1.8e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20091741|ref|NP_617816.1| - 1.5e-05 24.8 0.0 2.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|20091741|ref|NP_617816.1| - 3.8e-05 23.5 0.3 6.4e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|20091741|ref|NP_617816.1| - 0.0027 17.9 0.3 0.0035 17.5 0.3 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|20091741|ref|NP_617816.1| - 0.0036 17.6 0.1 0.0052 17.1 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_26 PF13443.6 gi|20091741|ref|NP_617816.1| - 0.0093 16.4 0.2 0.24 11.9 0.0 2.5 2 1 1 3 3 3 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|20091741|ref|NP_617816.1| - 0.013 15.4 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_41 PF14502.6 gi|20091741|ref|NP_617816.1| - 0.015 15.0 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|20091741|ref|NP_617816.1| - 0.042 13.6 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_29 PF13551.6 gi|20091741|ref|NP_617816.1| - 0.045 13.8 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Mga PF05043.13 gi|20091741|ref|NP_617816.1| - 0.063 13.9 0.2 0.16 12.6 0.2 1.7 1 1 1 2 2 2 0 Mga helix-turn-helix domain HxlR PF01638.17 gi|20091741|ref|NP_617816.1| - 0.071 13.0 0.2 0.091 12.6 0.2 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.21 gi|20091741|ref|NP_617816.1| - 0.078 12.6 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|20091741|ref|NP_617816.1| - 0.12 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain sCache_2 PF17200.4 gi|20091742|ref|NP_617817.1| - 3.4e-14 53.0 0.0 6.1e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|20091742|ref|NP_617817.1| - 8.4e-12 44.9 0.0 1.6e-11 43.9 0.0 1.4 1 1 0 1 1 1 1 Cache domain Cupin_2 PF07883.11 gi|20091742|ref|NP_617817.1| - 1.9e-10 40.3 0.4 5.5e-10 38.8 0.0 1.9 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|20091742|ref|NP_617817.1| - 0.00011 22.1 0.0 0.00023 21.1 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|20091742|ref|NP_617817.1| - 0.00033 20.3 0.0 0.00064 19.4 0.0 1.4 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|20091742|ref|NP_617817.1| - 0.0038 17.1 0.0 0.0062 16.4 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|20091742|ref|NP_617817.1| - 0.012 15.3 0.0 0.048 13.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF861) GPI PF06560.11 gi|20091742|ref|NP_617817.1| - 0.17 11.1 0.0 0.37 10.0 0.0 1.5 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) NAS PF03059.16 gi|20091743|ref|NP_617818.1| - 1.3e-47 162.5 0.0 1.9e-47 161.9 0.0 1.2 1 0 0 1 1 1 1 Nicotianamine synthase protein CCP_MauG PF03150.14 gi|20091744|ref|NP_617819.1| - 3.1e-36 125.3 0.0 1.2e-33 116.9 0.0 2.3 2 1 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.21 gi|20091744|ref|NP_617819.1| - 1.4e-05 26.2 0.3 0.25 12.5 0.3 3.5 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|20091744|ref|NP_617819.1| - 0.029 14.7 0.0 17 5.8 0.0 3.2 3 0 0 3 3 3 0 Cytochrome C oxidase, cbb3-type, subunit III DUF5343 PF17278.2 gi|20091744|ref|NP_617819.1| - 0.034 14.2 0.0 0.065 13.3 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5343) Paired_CXXCH_1 PF09699.10 gi|20091744|ref|NP_617819.1| - 0.055 13.2 1.3 8.1 6.3 0.1 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 gi|20091744|ref|NP_617819.1| - 0.092 12.8 0.0 7.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DUF1924 PF09086.11 gi|20091744|ref|NP_617819.1| - 0.2 12.0 0.0 2 8.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1924) PKD PF00801.20 gi|20091745|ref|NP_617820.1| - 2.7e-10 40.0 0.4 1.6e-09 37.4 0.4 2.4 1 0 0 1 1 1 1 PKD domain NHL PF01436.21 gi|20091745|ref|NP_617820.1| - 4.3e-09 35.9 4.9 0.53 10.4 0.0 5.9 6 0 0 6 6 6 4 NHL repeat Herpes_BLLF1 PF05109.13 gi|20091745|ref|NP_617820.1| - 0.0024 16.0 28.1 0.0024 16.0 28.1 3.7 1 1 2 3 3 3 2 Herpes virus major outer envelope glycoprotein (BLLF1) Acyl-CoA_dh_M PF02770.19 gi|20091745|ref|NP_617820.1| - 0.018 15.3 11.1 13 6.0 0.1 5.1 1 1 3 5 5 5 0 Acyl-CoA dehydrogenase, middle domain FlgD_ig PF13860.6 gi|20091745|ref|NP_617820.1| - 0.093 12.6 30.3 1.3 8.9 0.5 6.8 4 1 3 7 7 7 0 FlgD Ig-like domain baeRF_family8 PF18851.1 gi|20091745|ref|NP_617820.1| - 0.13 12.3 0.2 27 4.8 0.0 3.8 2 1 1 4 4 4 0 Bacterial archaeo-eukaryotic release factor family 8 MULE PF10551.9 gi|20091747|ref|NP_617822.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091747|ref|NP_617822.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091747|ref|NP_617822.1| - 0.022 14.8 0.1 0.063 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091747|ref|NP_617822.1| - 0.028 14.3 0.6 0.059 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091747|ref|NP_617822.1| - 0.04 13.8 1.1 0.093 12.6 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20091747|ref|NP_617822.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20091747|ref|NP_617822.1| - 0.064 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091747|ref|NP_617822.1| - 0.07 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091747|ref|NP_617822.1| - 0.17 12.0 3.4 0.39 10.8 3.4 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091747|ref|NP_617822.1| - 0.25 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20091747|ref|NP_617822.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger Aha1_N PF09229.11 gi|20091748|ref|NP_617823.1| - 0.13 12.5 1.5 2.4 8.4 1.5 2.1 1 1 0 1 1 1 0 Activator of Hsp90 ATPase, N-terminal Metallophos PF00149.28 gi|20091749|ref|NP_617824.1| - 6.6e-05 23.5 0.9 0.00017 22.2 0.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20091749|ref|NP_617824.1| - 0.001 19.3 0.0 0.0026 18.0 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain rve PF00665.26 gi|20091750|ref|NP_617825.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20091750|ref|NP_617825.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20091750|ref|NP_617825.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20091750|ref|NP_617825.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20091750|ref|NP_617825.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091750|ref|NP_617825.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20091750|ref|NP_617825.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal Peptidase_S9 PF00326.21 gi|20091752|ref|NP_617827.1| - 8.4e-13 48.3 0.0 1e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|20091752|ref|NP_617827.1| - 1.2e-12 47.7 0.0 9e-10 38.2 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|20091752|ref|NP_617827.1| - 4.2e-10 39.7 0.0 5.9e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|20091752|ref|NP_617827.1| - 7.5e-10 39.1 0.0 4.1e-07 30.1 0.0 2.4 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|20091752|ref|NP_617827.1| - 6.1e-09 36.8 0.0 9.3e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|20091752|ref|NP_617827.1| - 6.3e-08 32.6 0.1 3.9e-07 30.0 0.1 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|20091752|ref|NP_617827.1| - 4.4e-07 29.7 0.0 0.012 15.2 0.0 2.3 1 1 1 2 2 2 2 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 gi|20091752|ref|NP_617827.1| - 2e-05 24.6 0.0 0.00055 19.8 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|20091752|ref|NP_617827.1| - 0.00095 17.9 0.0 0.031 12.9 0.0 2.1 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) DUF1100 PF06500.11 gi|20091752|ref|NP_617827.1| - 0.0015 17.4 0.0 0.0028 16.5 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) PGAP1 PF07819.13 gi|20091752|ref|NP_617827.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 PGAP1-like protein Acyl_transf_2 PF02273.15 gi|20091752|ref|NP_617827.1| - 0.069 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Acyl transferase Esterase_phd PF10503.9 gi|20091752|ref|NP_617827.1| - 0.11 11.9 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase DUF676 PF05057.14 gi|20091752|ref|NP_617827.1| - 0.12 11.9 0.6 0.89 9.0 0.0 2.1 1 1 1 2 2 2 0 Putative serine esterase (DUF676) FSH1 PF03959.13 gi|20091752|ref|NP_617827.1| - 0.21 11.2 0.0 2.1 7.9 0.0 2.1 1 1 0 1 1 1 0 Serine hydrolase (FSH1) PhoU_div PF01865.16 gi|20091753|ref|NP_617828.1| - 6.4e-49 166.2 1.1 7.3e-49 166.0 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PHO4 PF01384.20 gi|20091754|ref|NP_617829.1| - 2.3e-99 332.7 39.4 7.3e-99 331.0 39.4 1.7 1 1 0 1 1 1 1 Phosphate transporter family Nitro_FeMo-Co PF02579.17 gi|20091755|ref|NP_617830.1| - 1.6e-20 73.2 0.0 1.9e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor HTH_32 PF13565.6 gi|20091756|ref|NP_617831.1| - 2.4e-12 47.3 0.1 4.7e-12 46.4 0.0 1.5 1 1 1 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.6 gi|20091756|ref|NP_617831.1| - 7.9e-10 38.3 0.0 1.9e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|20091756|ref|NP_617831.1| - 6.2e-07 29.4 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|20091756|ref|NP_617831.1| - 0.00016 21.7 0.0 0.00029 20.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|20091756|ref|NP_617831.1| - 0.033 14.1 0.0 1.4 8.9 0.1 2.3 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB LZ_Tnp_IS481 PF13011.6 gi|20091756|ref|NP_617831.1| - 0.042 14.4 0.0 0.066 13.7 0.0 1.3 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DDE_3 PF13358.6 gi|20091757|ref|NP_617832.1| - 0.00039 20.2 0.0 0.00043 20.1 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease ABC_tran PF00005.27 gi|20091758|ref|NP_617833.1| - 4.7e-33 114.6 0.1 7.9e-33 113.9 0.1 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|20091758|ref|NP_617833.1| - 5.4e-09 36.1 22.9 8.8e-09 35.4 22.9 1.4 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|20091758|ref|NP_617833.1| - 1.4e-07 31.2 4.1 1.3e-05 24.8 4.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20091758|ref|NP_617833.1| - 0.00059 19.8 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|20091758|ref|NP_617833.1| - 0.0031 17.2 0.2 0.0096 15.6 0.2 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20091758|ref|NP_617833.1| - 0.0041 17.6 0.2 0.0065 17.0 0.2 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20091758|ref|NP_617833.1| - 0.014 15.6 0.2 0.13 12.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|20091758|ref|NP_617833.1| - 0.015 14.5 1.4 0.022 13.9 0.2 1.8 1 1 1 2 2 2 0 G-protein alpha subunit AAA_21 PF13304.6 gi|20091758|ref|NP_617833.1| - 0.031 14.1 1.1 0.58 9.9 0.3 2.7 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|20091758|ref|NP_617833.1| - 0.038 13.2 0.0 0.08 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|20091758|ref|NP_617833.1| - 0.04 13.4 0.1 0.11 11.9 0.1 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region CD52 PF15116.6 gi|20091758|ref|NP_617833.1| - 0.073 13.1 1.2 0.28 11.2 1.2 2.0 1 0 0 1 1 1 0 CAMPATH-1 antigen ResIII PF04851.15 gi|20091758|ref|NP_617833.1| - 0.087 12.8 0.8 0.16 11.9 0.8 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|20091758|ref|NP_617833.1| - 0.12 12.1 0.3 0.36 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|20091758|ref|NP_617833.1| - 0.14 12.6 2.8 2.6 8.5 2.8 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|20091758|ref|NP_617833.1| - 0.16 11.7 0.2 0.91 9.2 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|20091758|ref|NP_617833.1| - 0.19 12.0 0.8 1.3 9.3 0.3 2.5 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit rve PF00665.26 gi|20091759|ref|NP_617834.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20091759|ref|NP_617834.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20091759|ref|NP_617834.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20091759|ref|NP_617834.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20091759|ref|NP_617834.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091759|ref|NP_617834.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20091759|ref|NP_617834.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal Beta-lactamase PF00144.24 gi|20091760|ref|NP_617835.1| - 2.8e-06 26.8 0.0 4e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF3471 PF11954.8 gi|20091760|ref|NP_617835.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3471) DDE_Tnp_1 PF01609.21 gi|20091761|ref|NP_617836.1| - 6.8e-10 39.0 0.4 3.5e-09 36.6 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|20091761|ref|NP_617836.1| - 0.051 13.6 1.2 0.24 11.4 0.1 2.2 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20091762|ref|NP_617837.1| - 3.5e-05 23.6 0.0 6.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain ESP PF16590.5 gi|20091762|ref|NP_617837.1| - 0.83 10.0 3.4 17 5.7 0.2 3.2 3 0 0 3 3 3 0 Exocrine gland-secreting peptide DUF4969 PF16339.5 gi|20091763|ref|NP_617838.1| - 0.064 13.6 0.1 6 7.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4969) HTH_Tnp_Tc3_1 PF11427.8 gi|20091763|ref|NP_617838.1| - 0.1 12.5 0.1 4.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Tc3 transposase DUF1455 PF07306.11 gi|20091764|ref|NP_617839.1| - 0.019 15.0 0.1 7.8 6.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1455) PQQ_3 PF13570.6 gi|20091764|ref|NP_617839.1| - 0.15 12.6 4.3 2.3 8.8 0.0 4.1 4 0 0 4 4 4 0 PQQ-like domain HTH_23 PF13384.6 gi|20091765|ref|NP_617840.1| - 2.3e-06 27.2 0.0 4.6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20091765|ref|NP_617840.1| - 2.9e-06 27.1 0.0 4.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20091765|ref|NP_617840.1| - 0.00012 22.2 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20091765|ref|NP_617840.1| - 0.001 18.8 0.4 0.0069 16.1 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091765|ref|NP_617840.1| - 0.0057 16.3 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20091765|ref|NP_617840.1| - 0.0091 16.0 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|20091765|ref|NP_617840.1| - 0.0098 14.9 0.2 0.016 14.3 0.2 1.3 1 1 0 1 1 1 1 Tn7-like transposition protein D Zn_Tnp_IS1 PF03811.13 gi|20091765|ref|NP_617840.1| - 0.046 13.5 8.2 0.075 12.8 8.2 1.4 1 0 0 1 1 1 0 InsA N-terminal domain zf-Mss51 PF13824.6 gi|20091765|ref|NP_617840.1| - 0.046 13.8 3.4 0.099 12.8 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.7 gi|20091765|ref|NP_617840.1| - 0.056 13.4 6.6 0.088 12.8 6.6 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20091765|ref|NP_617840.1| - 0.094 13.0 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Transposase Zn-ribbon_8 PF09723.10 gi|20091765|ref|NP_617840.1| - 0.14 12.3 1.6 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.20 gi|20091765|ref|NP_617840.1| - 2.6 8.1 5.2 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin TFIIS_C PF01096.18 gi|20091765|ref|NP_617840.1| - 5.4 6.9 6.6 11 6.0 0.6 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DDE_Tnp_1 PF01609.21 gi|20091766|ref|NP_617841.1| - 1.1e-05 25.2 3.7 1.1e-05 25.2 3.7 1.0 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20091766|ref|NP_617841.1| - 0.0063 16.9 1.9 0.011 16.1 1.7 1.6 1 1 0 1 1 1 1 Transposase DDE domain Roughex PF06020.11 gi|20091766|ref|NP_617841.1| - 0.024 13.7 1.7 0.027 13.6 1.7 1.0 1 0 0 1 1 1 0 Drosophila roughex protein TetR_N PF00440.23 gi|20091767|ref|NP_617842.1| - 5.9e-18 64.4 0.1 1e-17 63.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|20091767|ref|NP_617842.1| - 0.0011 19.1 0.1 0.0029 17.7 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase TetR_C_24 PF17932.1 gi|20091767|ref|NP_617842.1| - 0.023 14.9 0.0 0.066 13.5 0.0 1.8 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF3795 PF12675.7 gi|20091768|ref|NP_617843.1| - 6.4e-19 68.2 4.4 8.6e-19 67.7 4.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) MSL2-CXC PF16682.5 gi|20091768|ref|NP_617843.1| - 0.045 13.9 0.3 0.045 13.9 0.3 2.2 3 0 0 3 3 3 0 CXC domain of E3 ubiquitin-protein ligase MSL2 ThiS PF02597.20 gi|20091769|ref|NP_617844.1| - 0.0027 18.3 0.2 0.0034 18.0 0.2 1.1 1 0 0 1 1 1 1 ThiS family E1-E2_ATPase PF00122.20 gi|20091769|ref|NP_617844.1| - 0.076 12.5 0.2 0.082 12.4 0.2 1.2 1 0 0 1 1 1 0 E1-E2 ATPase TetR_N PF00440.23 gi|20091770|ref|NP_617845.1| - 5.6e-18 64.5 0.0 8.9e-18 63.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|20091770|ref|NP_617845.1| - 0.00047 20.4 0.0 0.00081 19.6 0.0 1.4 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal HTH_Tnp_1_2 PF13022.6 gi|20091770|ref|NP_617845.1| - 0.0015 18.7 0.1 0.0025 18.0 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_22 PF13309.6 gi|20091770|ref|NP_617845.1| - 0.0029 17.6 0.1 0.0064 16.6 0.1 1.6 1 1 0 1 1 1 1 HTH domain HTH_3 PF01381.22 gi|20091770|ref|NP_617845.1| - 0.006 16.6 0.0 0.02 15.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_7 PF02796.15 gi|20091770|ref|NP_617845.1| - 0.0099 15.9 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|20091770|ref|NP_617845.1| - 0.017 14.9 0.0 0.044 13.6 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 gi|20091770|ref|NP_617845.1| - 0.034 14.1 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|20091770|ref|NP_617845.1| - 0.055 12.9 0.0 0.3 10.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_4 PF13613.6 gi|20091770|ref|NP_617845.1| - 0.067 12.9 0.0 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_1 PF01527.20 gi|20091770|ref|NP_617845.1| - 0.11 12.8 0.0 0.28 11.5 0.0 1.7 1 1 0 1 1 1 0 Transposase LCM PF04072.14 gi|20091771|ref|NP_617846.1| - 1.4e-52 178.4 0.0 3.5e-52 177.1 0.0 1.6 2 0 0 2 2 2 1 Leucine carboxyl methyltransferase DUF2065 PF09838.9 gi|20091771|ref|NP_617846.1| - 0.035 14.1 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2065) Amidohydro_3 PF07969.11 gi|20091772|ref|NP_617847.1| - 1.8e-105 354.1 0.0 2.1e-105 354.0 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|20091772|ref|NP_617847.1| - 8.6e-09 35.2 0.2 3.4e-06 26.6 0.2 2.7 1 1 0 1 1 1 1 Amidohydrolase family DDE_Tnp_ISL3 PF01610.17 gi|20091773|ref|NP_617848.1| - 2.3e-30 106.1 3.6 2.8e-30 105.8 3.6 1.0 1 0 0 1 1 1 1 Transposase TrmB PF01978.19 gi|20091774|ref|NP_617849.1| - 0.0074 16.1 0.1 0.013 15.4 0.1 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB NosD PF05048.13 gi|20091775|ref|NP_617850.1| - 2.8e-19 69.4 1.1 3.9e-19 68.9 1.1 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) DUF1670 PF07900.11 gi|20091776|ref|NP_617851.1| - 7.9e-99 329.5 4.1 9.3e-99 329.2 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20091776|ref|NP_617851.1| - 1.9e-05 24.3 0.0 0.17 11.7 0.0 4.0 3 1 1 4 4 4 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20091776|ref|NP_617851.1| - 0.0001 21.9 0.6 3.1 7.6 0.1 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_17 PF12728.7 gi|20091776|ref|NP_617851.1| - 0.00047 20.3 0.1 0.97 9.7 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|20091776|ref|NP_617851.1| - 0.00077 19.3 0.3 0.076 12.9 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|20091776|ref|NP_617851.1| - 0.00081 18.9 0.0 10 5.7 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|20091776|ref|NP_617851.1| - 0.0012 18.8 0.2 0.22 11.5 0.0 3.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20091776|ref|NP_617851.1| - 0.0019 18.1 0.3 0.018 14.9 0.2 2.5 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|20091776|ref|NP_617851.1| - 0.0065 16.5 0.1 8.4 6.5 0.0 3.1 2 1 1 3 3 3 1 Winged helix-turn helix Phage_terminase PF10668.9 gi|20091776|ref|NP_617851.1| - 0.0078 16.2 0.3 2.8 8.0 0.1 2.5 2 0 0 2 2 2 1 Phage terminase small subunit HTH_11 PF08279.12 gi|20091776|ref|NP_617851.1| - 0.011 15.7 0.4 6 6.9 0.1 2.9 3 0 0 3 3 3 0 HTH domain Fe_dep_repress PF01325.19 gi|20091776|ref|NP_617851.1| - 0.02 15.1 0.9 7.4 6.8 0.3 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|20091776|ref|NP_617851.1| - 0.054 13.0 0.7 11 5.7 0.0 3.7 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|20091776|ref|NP_617851.1| - 0.062 12.8 0.3 2.6 7.6 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_Tnp_4 PF13613.6 gi|20091776|ref|NP_617851.1| - 0.13 12.0 0.0 0.38 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1670 PF07900.11 gi|20091777|ref|NP_617852.1| - 8e-88 293.5 0.2 9.8e-88 293.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20091777|ref|NP_617852.1| - 3.6e-06 26.8 0.1 0.00079 19.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|20091777|ref|NP_617852.1| - 0.0011 19.1 0.1 0.18 12.0 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20091777|ref|NP_617852.1| - 0.0012 18.4 0.1 0.0075 15.8 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|20091777|ref|NP_617852.1| - 0.0015 18.3 0.0 6.2 6.8 0.0 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|20091777|ref|NP_617852.1| - 0.0021 18.0 0.6 0.0084 16.0 0.1 2.2 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|20091777|ref|NP_617852.1| - 0.0026 17.7 0.1 0.85 9.7 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|20091777|ref|NP_617852.1| - 0.0094 15.9 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20091777|ref|NP_617852.1| - 0.011 15.6 0.4 1.9 8.5 0.1 3.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|20091777|ref|NP_617852.1| - 0.02 14.6 0.7 0.091 12.5 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091777|ref|NP_617852.1| - 0.044 13.5 1.5 10 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.22 gi|20091777|ref|NP_617852.1| - 0.058 13.3 0.2 0.18 11.7 0.1 1.8 2 0 0 2 2 2 0 MarR family TENA_THI-4 PF03070.16 gi|20091777|ref|NP_617852.1| - 0.063 13.1 0.2 1.9 8.2 0.0 2.5 3 0 0 3 3 3 0 TENA/THI-4/PQQC family HTH_20 PF12840.7 gi|20091777|ref|NP_617852.1| - 0.068 13.2 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20091777|ref|NP_617852.1| - 0.082 12.8 0.0 4 7.4 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|20091777|ref|NP_617852.1| - 0.15 11.9 0.1 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Beta_helix PF13229.6 gi|20091778|ref|NP_617853.1| - 2.5e-11 43.7 43.2 4.4e-07 29.9 15.9 2.9 2 1 1 3 3 3 2 Right handed beta helix region DUF756 PF05506.12 gi|20091778|ref|NP_617853.1| - 7.1 7.6 11.0 63 4.6 0.1 4.4 2 1 1 3 3 3 0 Domain of unknown function (DUF756) SDF PF00375.18 gi|20091779|ref|NP_617854.1| - 1.6e-116 389.6 46.4 1.8e-116 389.4 46.4 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family AFOR_C PF01314.18 gi|20091780|ref|NP_617855.1| - 7.7e-67 225.9 0.2 1e-66 225.5 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|20091780|ref|NP_617855.1| - 7.7e-63 212.0 0.0 1.2e-62 211.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fer4 PF00037.27 gi|20091781|ref|NP_617856.1| - 8.1e-14 50.8 35.6 1.5e-05 24.6 4.8 5.1 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20091781|ref|NP_617856.1| - 6.8e-13 49.0 20.9 0.00034 21.1 8.2 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091781|ref|NP_617856.1| - 2.2e-10 40.5 28.1 2.1e-05 24.6 12.6 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091781|ref|NP_617856.1| - 2.8e-10 39.8 35.2 0.00034 20.6 3.6 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20091781|ref|NP_617856.1| - 6e-10 38.6 32.9 0.00073 19.5 1.2 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20091781|ref|NP_617856.1| - 7.9e-10 38.7 30.2 0.0023 18.0 1.2 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091781|ref|NP_617856.1| - 9.4e-09 36.1 26.4 0.0026 18.7 0.7 4.4 1 1 4 5 5 5 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|20091781|ref|NP_617856.1| - 3e-08 33.7 27.2 0.00037 20.6 8.1 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20091781|ref|NP_617856.1| - 7e-06 26.2 30.6 0.0015 18.9 0.6 4.8 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|20091781|ref|NP_617856.1| - 1.5e-05 25.0 12.0 1.5e-05 25.0 12.0 2.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20091781|ref|NP_617856.1| - 0.00022 21.7 27.3 0.23 12.0 1.9 3.7 2 2 3 5 5 5 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20091781|ref|NP_617856.1| - 0.00037 21.2 42.4 0.12 13.4 4.8 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20091781|ref|NP_617856.1| - 0.02 15.4 29.0 0.17 12.3 7.8 3.6 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20091781|ref|NP_617856.1| - 0.23 12.2 21.5 5.2 7.9 0.2 4.1 3 1 0 3 3 3 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|20091781|ref|NP_617856.1| - 0.45 10.7 0.1 0.45 10.7 0.1 3.1 1 1 2 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|20091781|ref|NP_617856.1| - 3 8.5 23.0 0.35 11.4 1.6 3.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|20091781|ref|NP_617856.1| - 9.8 7.1 28.5 3.5 8.5 0.3 3.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain DDE_Tnp_1 PF01609.21 gi|20091783|ref|NP_617858.1| - 1.5e-11 44.4 4.1 4.8e-11 42.7 4.1 1.7 1 1 0 1 1 1 1 Transposase DDE domain GATase PF00117.28 gi|20091784|ref|NP_617859.1| - 1.4e-17 64.0 0.0 2e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|20091784|ref|NP_617859.1| - 1.6e-05 24.6 0.0 2.6e-05 23.9 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.16 gi|20091784|ref|NP_617859.1| - 1.6e-05 24.0 0.0 2.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|20091784|ref|NP_617859.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|20091784|ref|NP_617859.1| - 0.028 14.2 0.1 0.088 12.5 0.0 1.9 2 1 0 2 2 2 0 Peptidase C26 HAD_2 PF13419.6 gi|20091785|ref|NP_617860.1| - 4.3e-40 137.7 0.3 5.3e-40 137.4 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20091785|ref|NP_617860.1| - 1.6e-14 54.7 0.6 1.6e-13 51.5 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20091785|ref|NP_617860.1| - 3.5e-07 30.2 0.0 6e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|20091785|ref|NP_617860.1| - 1.5e-05 25.5 0.0 2.3e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Amino_oxidase PF01593.24 gi|20091786|ref|NP_617861.1| - 2.2e-18 66.8 0.0 4.2e-18 65.9 0.0 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|20091786|ref|NP_617861.1| - 6.3e-18 64.8 0.1 1.3e-17 63.8 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|20091786|ref|NP_617861.1| - 1.1e-11 44.5 0.1 2.7e-09 36.6 0.3 2.7 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 gi|20091786|ref|NP_617861.1| - 7.1e-10 39.0 0.0 3.8e-07 30.0 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|20091786|ref|NP_617861.1| - 8.9e-10 38.5 0.0 1.7e-09 37.6 0.0 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|20091786|ref|NP_617861.1| - 6.9e-08 31.6 0.2 5.1e-07 28.7 0.1 2.2 2 1 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|20091786|ref|NP_617861.1| - 1.7e-06 27.6 0.1 3.1e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|20091786|ref|NP_617861.1| - 3.3e-06 26.5 0.1 7e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|20091786|ref|NP_617861.1| - 1.2e-05 24.7 0.0 2.1e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.18 gi|20091786|ref|NP_617861.1| - 2.2e-05 23.2 0.4 4.6e-05 22.1 0.4 1.5 1 0 0 1 1 1 1 GDP dissociation inhibitor GIDA PF01134.22 gi|20091786|ref|NP_617861.1| - 0.0001 21.6 0.9 0.00068 18.8 0.3 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|20091786|ref|NP_617861.1| - 0.00019 21.9 1.4 0.00031 21.2 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|20091786|ref|NP_617861.1| - 0.00025 20.4 0.0 0.0041 16.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|20091786|ref|NP_617861.1| - 0.0071 15.7 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|20091786|ref|NP_617861.1| - 0.027 13.5 0.1 0.04 13.0 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|20091786|ref|NP_617861.1| - 0.083 11.7 0.1 0.16 10.8 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase Rieske PF00355.26 gi|20091787|ref|NP_617862.1| - 1.8e-18 66.3 0.0 2.2e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|20091787|ref|NP_617862.1| - 7.7e-09 35.4 0.0 9.4e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain B12-binding_2 PF02607.17 gi|20091789|ref|NP_617864.1| - 1.4e-21 76.7 0.0 3.1e-21 75.6 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|20091789|ref|NP_617864.1| - 5.7e-16 58.7 0.2 1.1e-15 57.7 0.2 1.4 1 0 0 1 1 1 1 B12 binding domain MtmB PF05369.12 gi|20091790|ref|NP_617865.1| - 1.1e-235 782.6 2.4 1.2e-235 782.4 2.4 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB DUF2769 PF10967.8 gi|20091791|ref|NP_617866.1| - 1.9e-16 60.4 15.0 2.2e-16 60.3 15.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) TerY_C PF15616.6 gi|20091791|ref|NP_617866.1| - 2.9 8.0 11.9 3.3 7.8 11.9 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Mon2_C PF16206.5 gi|20091792|ref|NP_617867.1| - 0.11 10.7 0.3 0.13 10.4 0.3 1.1 1 0 0 1 1 1 0 C-terminal region of Mon2 protein HutP PF09021.11 gi|20091793|ref|NP_617868.1| - 0.0074 16.6 1.4 0.015 15.6 1.4 1.5 1 0 0 1 1 1 1 HutP NIT PF08376.10 gi|20091793|ref|NP_617868.1| - 0.076 13.5 1.2 0.12 12.8 0.4 1.7 1 1 0 1 1 1 0 Nitrate and nitrite sensing SPT_ssu-like PF11779.8 gi|20091794|ref|NP_617869.1| - 0.037 13.6 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Small subunit of serine palmitoyltransferase-like Beta_helix PF13229.6 gi|20091797|ref|NP_617872.1| - 1.8e-45 154.6 102.9 2.2e-19 69.9 30.4 3.1 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|20091797|ref|NP_617872.1| - 1.5e-36 125.9 69.8 1e-19 70.8 33.2 2.8 1 1 2 3 3 3 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|20091797|ref|NP_617872.1| - 0.0036 17.2 31.4 0.0054 16.6 8.0 3.6 1 1 1 2 2 2 1 Pectate lyase superfamily protein OppC_N PF12911.7 gi|20091797|ref|NP_617872.1| - 0.076 13.0 0.0 0.076 13.0 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Peptidase_C70 PF12385.8 gi|20091798|ref|NP_617873.1| - 1.3e-10 41.4 0.1 2.3e-10 40.6 0.1 1.4 1 1 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 gi|20091798|ref|NP_617873.1| - 2.2e-09 38.0 0.1 7.7e-09 36.3 0.1 2.1 1 1 0 1 1 1 1 Peptidase_C39 like family FGFR3_TM PF18123.1 gi|20091799|ref|NP_617874.1| - 1.7 8.3 6.5 2.9 7.5 6.5 1.3 1 0 0 1 1 1 0 Fibroblast growth factor receptor 3 transmembrane domain rve PF00665.26 gi|20091801|ref|NP_617876.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20091801|ref|NP_617876.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20091801|ref|NP_617876.1| - 7.5e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20091801|ref|NP_617876.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20091801|ref|NP_617876.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091801|ref|NP_617876.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20091801|ref|NP_617876.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20091801|ref|NP_617876.1| - 0.11 12.2 0.5 0.5 10.1 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment Retrotran_gag_2 PF14223.6 gi|20091802|ref|NP_617877.1| - 0.18 11.4 0.4 1.3 8.6 0.1 2.5 3 1 0 3 3 3 0 gag-polypeptide of LTR copia-type Vps5 PF09325.10 gi|20091803|ref|NP_617878.1| - 0.009 15.6 0.8 0.023 14.3 0.6 1.8 1 1 0 1 1 1 1 Vps5 C terminal like GATase PF00117.28 gi|20091804|ref|NP_617879.1| - 1.4e-46 158.7 0.0 1.7e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|20091804|ref|NP_617879.1| - 2e-18 67.0 0.2 7.6e-18 65.0 0.2 1.8 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|20091805|ref|NP_617880.1| - 1.3e-93 313.3 0.0 1.8e-91 306.3 0.0 2.3 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|20091805|ref|NP_617880.1| - 1.9e-20 73.5 1.5 3e-19 69.6 0.0 2.9 2 2 1 3 3 3 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|20091806|ref|NP_617881.1| - 5.5e-34 117.6 0.0 2.1e-33 115.7 0.0 1.7 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|20091806|ref|NP_617881.1| - 0.0069 15.7 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine monophosphate synthase His_biosynth PF00977.21 gi|20091806|ref|NP_617881.1| - 0.012 15.1 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein BtpA PF03437.15 gi|20091806|ref|NP_617881.1| - 0.046 13.1 0.1 5.4 6.4 0.0 2.1 1 1 1 2 2 2 0 BtpA family NMO PF03060.15 gi|20091806|ref|NP_617881.1| - 0.048 13.1 0.1 0.3 10.4 0.1 2.0 1 1 0 1 1 1 0 Nitronate monooxygenase Glycos_transf_3 PF00591.21 gi|20091807|ref|NP_617882.1| - 1.7e-100 335.8 1.5 2.3e-100 335.4 1.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|20091807|ref|NP_617882.1| - 3.6e-17 61.9 0.7 9.2e-17 60.7 0.4 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Trp_syntA PF00290.20 gi|20091808|ref|NP_617883.1| - 3.9e-93 311.0 0.1 4.7e-93 310.8 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|20091808|ref|NP_617883.1| - 0.00028 20.4 0.2 0.00075 19.0 0.3 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|20091808|ref|NP_617883.1| - 0.00063 19.3 0.2 0.0091 15.5 0.3 2.2 2 0 0 2 2 2 1 PcrB family DHO_dh PF01180.21 gi|20091808|ref|NP_617883.1| - 0.014 14.6 0.1 0.022 14.0 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|20091808|ref|NP_617883.1| - 0.017 14.3 0.0 0.026 13.7 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase PA PF02225.22 gi|20091808|ref|NP_617883.1| - 0.022 14.8 0.1 1.1 9.3 0.1 2.4 2 0 0 2 2 2 0 PA domain NanE PF04131.14 gi|20091808|ref|NP_617883.1| - 0.026 13.7 0.1 0.52 9.5 0.1 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|20091808|ref|NP_617883.1| - 0.048 13.0 0.0 0.31 10.3 0.0 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|20091808|ref|NP_617883.1| - 0.11 11.5 0.8 0.26 10.3 0.9 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase ALF PF03752.13 gi|20091808|ref|NP_617883.1| - 2.1 8.4 5.7 0.49 10.4 1.0 2.3 2 0 0 2 2 2 0 Short repeats of unknown function PALP PF00291.25 gi|20091809|ref|NP_617884.1| - 4.6e-42 144.4 1.4 6.1e-42 144.0 1.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|20091810|ref|NP_617885.1| - 2.2e-65 220.3 0.0 2.7e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|20091810|ref|NP_617885.1| - 3.5e-06 26.4 0.1 0.00043 19.5 0.0 2.9 3 1 1 4 4 4 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|20091810|ref|NP_617885.1| - 0.0019 17.6 0.0 0.0095 15.3 0.0 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|20091810|ref|NP_617885.1| - 0.002 17.6 0.0 0.0046 16.4 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|20091810|ref|NP_617885.1| - 0.0094 15.2 0.0 0.12 11.5 0.0 2.3 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 gi|20091810|ref|NP_617885.1| - 0.026 13.6 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|20091810|ref|NP_617885.1| - 0.031 13.3 0.0 0.057 12.4 0.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain QRPTase_C PF01729.19 gi|20091810|ref|NP_617885.1| - 0.038 13.8 0.1 0.068 12.9 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF45 PF01863.17 gi|20091811|ref|NP_617886.1| - 5.8e-38 131.0 2.6 6.7e-38 130.8 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|20091811|ref|NP_617886.1| - 4e-06 27.0 0.1 6e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 WLM domain YhcG_C PF06250.11 gi|20091812|ref|NP_617887.1| - 5.7e-59 198.4 4.5 1.2e-58 197.3 4.5 1.5 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|20091812|ref|NP_617887.1| - 1e-43 148.8 2.8 1.6e-43 148.1 2.8 1.3 1 0 0 1 1 1 1 DUF1016 N-terminal domain HTH_ParB PF17762.1 gi|20091812|ref|NP_617887.1| - 0.012 15.4 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 HTH domain found in ParB protein CAS_CSE1 PF03378.15 gi|20091812|ref|NP_617887.1| - 0.017 13.6 0.0 0.029 12.9 0.0 1.3 1 0 0 1 1 1 0 CAS/CSE protein, C-terminus HSDR_N_2 PF13588.6 gi|20091812|ref|NP_617887.1| - 0.073 13.1 0.0 0.28 11.2 0.0 2.0 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) FtsX_ECD PF18075.1 gi|20091814|ref|NP_617889.1| - 0.11 13.1 0.1 0.13 12.9 0.1 1.3 1 1 0 1 1 1 0 FtsX extracellular domain Ceramidase PF05875.12 gi|20091816|ref|NP_617891.1| - 0.01 15.3 0.2 0.01 15.3 0.2 1.0 1 0 0 1 1 1 1 Ceramidase Glyco_transf_8 PF01501.20 gi|20091817|ref|NP_617892.1| - 0.033 13.7 0.1 0.035 13.6 0.1 1.0 1 0 0 1 1 1 0 Glycosyl transferase family 8 DUF1724 PF08350.10 gi|20091818|ref|NP_617893.1| - 1.7e-18 66.5 0.0 3.1e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20091818|ref|NP_617893.1| - 0.0089 15.9 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PKD PF00801.20 gi|20091819|ref|NP_617894.1| - 1.2e-11 44.2 1.9 2.2e-11 43.4 1.9 1.4 1 0 0 1 1 1 1 PKD domain DUF4336 PF14234.6 gi|20091820|ref|NP_617895.1| - 0.19 10.9 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4336) DDE_Tnp_IS1 PF03400.13 gi|20091822|ref|NP_617897.1| - 6.1e-09 36.3 0.1 6.7e-09 36.2 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20091823|ref|NP_617898.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20091823|ref|NP_617898.1| - 3.3e-06 26.9 0.0 4.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20091823|ref|NP_617898.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20091823|ref|NP_617898.1| - 0.0013 18.5 0.1 0.0069 16.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20091823|ref|NP_617898.1| - 0.0065 16.2 8.6 0.01 15.5 8.6 1.3 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20091823|ref|NP_617898.1| - 0.0076 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20091823|ref|NP_617898.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20091823|ref|NP_617898.1| - 0.022 13.8 0.1 0.032 13.2 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20091823|ref|NP_617898.1| - 0.042 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20091823|ref|NP_617898.1| - 0.056 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20091823|ref|NP_617898.1| - 0.067 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20091823|ref|NP_617898.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20091823|ref|NP_617898.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin Fae PF08714.11 gi|20091824|ref|NP_617899.1| - 2.7e-72 241.9 1.0 3.1e-72 241.7 1.0 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) DUF3349 PF11829.8 gi|20091824|ref|NP_617899.1| - 0.1 13.4 0.1 0.24 12.2 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3349) His_Phos_1 PF00300.22 gi|20091826|ref|NP_617901.1| - 4e-33 114.7 0.0 4.6e-33 114.5 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.22 gi|20091826|ref|NP_617901.1| - 0.0034 16.8 0.2 0.0051 16.2 0.1 1.5 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) CN_hydrolase PF00795.22 gi|20091827|ref|NP_617902.1| - 5.2e-45 153.8 0.0 2.5e-28 99.2 0.0 2.0 2 0 0 2 2 2 2 Carbon-nitrogen hydrolase DUF16 PF01519.16 gi|20091828|ref|NP_617903.1| - 0.049 14.1 0.0 0.093 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 PvlArgDC PF01862.16 gi|20091830|ref|NP_617905.1| - 2.6e-56 189.9 0.0 2.9e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DS PF01916.17 gi|20091831|ref|NP_617906.1| - 8.9e-102 340.2 0.1 1e-101 340.0 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CdAMP_rec PF06153.11 gi|20091831|ref|NP_617906.1| - 0.011 16.0 0.1 0.035 14.3 0.0 1.9 2 0 0 2 2 2 0 Cyclic-di-AMP receptor SSL_OB PF09199.10 gi|20091831|ref|NP_617906.1| - 0.27 11.6 1.1 0.99 9.8 0.1 2.2 2 0 0 2 2 2 0 Staphylococcal superantigen-like OB-fold domain ArsR PF09824.9 gi|20091832|ref|NP_617907.1| - 2e-66 222.5 0.0 2.3e-66 222.3 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator SMC_ScpB PF04079.16 gi|20091832|ref|NP_617907.1| - 0.0073 15.9 0.0 0.2 11.3 0.0 2.1 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|20091832|ref|NP_617907.1| - 0.035 14.2 0.0 0.99 9.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20091833|ref|NP_617908.1| - 1.4e-10 40.5 0.1 4.9e-10 38.8 0.0 2.0 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|20091833|ref|NP_617908.1| - 1.7e-10 40.6 0.0 4.2e-10 39.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|20091833|ref|NP_617908.1| - 5.1e-08 32.8 0.4 4e-06 26.7 0.0 3.0 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|20091833|ref|NP_617908.1| - 7.3e-07 29.0 0.2 2.9e-06 27.1 0.0 2.1 3 0 0 3 3 2 1 MarR family HTH_3 PF01381.22 gi|20091833|ref|NP_617908.1| - 5.1e-05 23.2 0.0 0.0036 17.3 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.12 gi|20091833|ref|NP_617908.1| - 9.8e-05 22.2 0.1 0.00024 21.0 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|20091833|ref|NP_617908.1| - 0.0001 22.2 0.0 0.00023 21.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix Mnd1 PF03962.15 gi|20091833|ref|NP_617908.1| - 0.00017 21.8 0.1 0.0011 19.3 0.0 2.3 3 0 0 3 3 1 1 Mnd1 HTH domain Rrf2 PF02082.20 gi|20091833|ref|NP_617908.1| - 0.00023 21.5 0.0 0.00059 20.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|20091833|ref|NP_617908.1| - 0.00048 20.6 0.0 0.0014 19.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|20091833|ref|NP_617908.1| - 0.0012 19.0 0.0 0.0044 17.2 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|20091833|ref|NP_617908.1| - 0.0027 17.5 0.0 0.0056 16.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|20091833|ref|NP_617908.1| - 0.0033 17.5 0.0 0.02 15.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|20091833|ref|NP_617908.1| - 0.0073 16.0 0.1 0.014 15.2 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|20091833|ref|NP_617908.1| - 0.0081 16.1 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|20091833|ref|NP_617908.1| - 0.0096 15.7 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HxlR PF01638.17 gi|20091833|ref|NP_617908.1| - 0.012 15.5 0.2 0.034 14.0 0.1 1.9 2 0 0 2 2 1 0 HxlR-like helix-turn-helix GntR PF00392.21 gi|20091833|ref|NP_617908.1| - 0.024 14.3 0.0 0.084 12.5 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4364 PF14277.6 gi|20091833|ref|NP_617908.1| - 0.026 14.3 0.1 0.045 13.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_10 PF04967.12 gi|20091833|ref|NP_617908.1| - 0.032 14.0 0.0 0.096 12.5 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_5 PF01022.20 gi|20091833|ref|NP_617908.1| - 0.038 13.8 0.0 0.09 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_13 PF11972.8 gi|20091833|ref|NP_617908.1| - 0.042 13.9 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Mrr_N PF14338.6 gi|20091833|ref|NP_617908.1| - 0.046 13.9 0.2 0.66 10.1 0.0 2.6 1 1 2 3 3 3 0 Mrr N-terminal domain Phage_rep_O PF04492.13 gi|20091833|ref|NP_617908.1| - 0.049 14.2 0.0 0.12 13.0 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage replication protein O TrmB PF01978.19 gi|20091833|ref|NP_617908.1| - 0.082 12.8 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 gi|20091833|ref|NP_617908.1| - 0.13 12.4 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin TetR_C_7 PF14246.6 gi|20091833|ref|NP_617908.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain Metallophos_2 PF12850.7 gi|20091834|ref|NP_617909.1| - 2.1e-27 96.3 0.0 2.6e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|20091834|ref|NP_617909.1| - 0.00053 20.5 0.2 0.14 12.6 0.0 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Flt3_lig PF02947.14 gi|20091836|ref|NP_617911.1| - 0.076 13.2 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 flt3 ligand HH_signal PF01085.18 gi|20091837|ref|NP_617912.1| - 1.7e-05 24.5 0.1 0.77 9.4 0.0 3.2 3 0 0 3 3 3 3 Hedgehog amino-terminal signalling domain tRNA_anti-codon PF01336.25 gi|20091837|ref|NP_617912.1| - 0.00088 19.2 0.1 0.33 11.0 0.0 2.7 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain POT1 PF02765.17 gi|20091837|ref|NP_617912.1| - 0.0026 17.6 0.0 0.98 9.2 0.0 2.3 2 0 0 2 2 2 2 Telomeric single stranded DNA binding POT1/CDC13 DUF4046 PF13255.6 gi|20091837|ref|NP_617912.1| - 0.055 14.0 0.2 5.8 7.6 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4046) Na_H_Exchanger PF00999.21 gi|20091838|ref|NP_617913.1| - 1.3e-42 146.0 48.8 1.8e-42 145.5 48.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|20091838|ref|NP_617913.1| - 6.9e-26 90.8 0.1 1.4e-25 89.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|20091838|ref|NP_617913.1| - 9.7e-13 47.8 0.5 4.3e-12 45.7 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|20091838|ref|NP_617913.1| - 4.1e-07 30.4 0.9 7.8e-07 29.5 0.2 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|20091838|ref|NP_617913.1| - 0.00038 20.1 0.4 0.00077 19.1 0.4 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SepA PF17080.5 gi|20091838|ref|NP_617913.1| - 0.00051 20.4 1.6 0.00051 20.4 1.6 2.3 2 0 0 2 2 2 1 Multidrug Resistance efflux pump Sacchrp_dh_NADP PF03435.18 gi|20091838|ref|NP_617913.1| - 0.001 19.3 0.2 0.002 18.4 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|20091838|ref|NP_617913.1| - 0.0013 18.4 0.1 0.0024 17.5 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|20091838|ref|NP_617913.1| - 0.0026 18.3 0.1 0.0074 16.8 0.1 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|20091838|ref|NP_617913.1| - 0.0029 17.8 0.1 0.0061 16.7 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|20091838|ref|NP_617913.1| - 0.0031 17.4 0.2 0.0062 16.4 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|20091838|ref|NP_617913.1| - 0.0078 15.8 0.2 0.012 15.1 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family FAD_binding_3 PF01494.19 gi|20091838|ref|NP_617913.1| - 0.012 14.9 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|20091838|ref|NP_617913.1| - 0.014 14.7 0.1 0.029 13.7 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|20091838|ref|NP_617913.1| - 0.026 13.8 0.6 0.055 12.8 0.6 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|20091838|ref|NP_617913.1| - 0.11 13.0 0.6 0.42 11.2 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Na_Ca_ex PF01699.24 gi|20091839|ref|NP_617914.1| - 3.9e-50 169.7 27.4 2.5e-25 89.2 7.7 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein NTP_transferase PF00483.23 gi|20091840|ref|NP_617915.1| - 1.7e-39 135.9 0.0 2.2e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|20091840|ref|NP_617915.1| - 1.6e-14 53.0 27.1 2.7e-08 33.2 4.3 5.1 4 2 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|20091840|ref|NP_617915.1| - 4.8e-13 49.8 0.0 6.8e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|20091840|ref|NP_617915.1| - 2e-07 30.6 22.1 8.8e-06 25.4 2.0 4.8 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|20091840|ref|NP_617915.1| - 1.4e-05 25.0 0.0 3.4e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|20091840|ref|NP_617915.1| - 0.0047 15.1 1.5 0.0066 14.6 1.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) SIS PF01380.22 gi|20091841|ref|NP_617916.1| - 8.4e-59 197.1 0.6 3.1e-28 98.3 0.1 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|20091841|ref|NP_617916.1| - 9.1e-21 74.5 0.0 2.2e-20 73.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|20091841|ref|NP_617916.1| - 7e-16 58.3 0.0 2e-15 56.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|20091841|ref|NP_617916.1| - 0.0026 16.7 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF5124 PF17160.4 gi|20091841|ref|NP_617916.1| - 0.02 15.7 0.0 0.044 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5124) PGM_PMM_I PF02878.16 gi|20091842|ref|NP_617917.1| - 8.2e-38 129.2 0.0 1.6e-37 128.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|20091842|ref|NP_617917.1| - 8.5e-28 97.0 0.1 2.9e-27 95.3 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|20091842|ref|NP_617917.1| - 1e-20 74.0 0.0 1.9e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|20091842|ref|NP_617917.1| - 1e-11 44.8 0.5 2.7e-11 43.5 0.5 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|20091842|ref|NP_617917.1| - 0.004 17.3 0.6 4.1 7.6 0.2 2.9 2 0 0 2 2 2 2 Damage-inducible protein CinA KH domain Methyltransf_23 PF13489.6 gi|20091842|ref|NP_617917.1| - 0.079 12.8 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain NTP_transferase PF00483.23 gi|20091843|ref|NP_617918.1| - 1.1e-46 159.5 0.0 2.6e-46 158.2 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.24 gi|20091843|ref|NP_617918.1| - 6.3e-14 51.1 17.3 3.4e-09 36.1 0.7 4.6 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|20091843|ref|NP_617918.1| - 3.8e-12 46.8 0.0 5e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|20091843|ref|NP_617918.1| - 3.4e-06 26.7 12.2 3.1e-05 23.6 2.7 4.1 3 1 2 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|20091843|ref|NP_617918.1| - 0.00018 21.3 0.0 0.0013 18.6 0.0 2.2 3 0 0 3 3 3 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|20091843|ref|NP_617918.1| - 0.0035 15.6 0.1 0.0052 15.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|20091843|ref|NP_617918.1| - 0.061 12.3 0.4 1.4 7.8 0.3 2.5 2 1 1 3 3 3 0 L-fucokinase ODV-E18 PF10717.9 gi|20091844|ref|NP_617919.1| - 0.15 12.0 0.5 0.25 11.2 0.5 1.3 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 AAA PF00004.29 gi|20091847|ref|NP_617922.1| - 3.1e-36 124.7 0.0 5.5e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|20091847|ref|NP_617922.1| - 2e-09 37.8 0.0 5.5e-09 36.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|20091847|ref|NP_617922.1| - 1.3e-05 25.5 0.5 0.0012 19.1 0.0 2.7 2 1 1 3 3 2 1 AAA domain TIP49 PF06068.13 gi|20091847|ref|NP_617922.1| - 1.5e-05 24.4 0.0 3.1e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_lid_3 PF17862.1 gi|20091847|ref|NP_617922.1| - 3.9e-05 23.4 0.1 8.8e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|20091847|ref|NP_617922.1| - 5.4e-05 23.2 0.0 0.00019 21.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|20091847|ref|NP_617922.1| - 0.00012 22.6 0.1 0.018 15.4 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|20091847|ref|NP_617922.1| - 0.00035 20.8 0.0 0.00092 19.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.12 gi|20091847|ref|NP_617922.1| - 0.00036 20.3 0.0 0.0013 18.5 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|20091847|ref|NP_617922.1| - 0.00042 20.1 0.0 0.00065 19.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF815 PF05673.13 gi|20091847|ref|NP_617922.1| - 0.0011 18.2 0.0 0.0046 16.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|20091847|ref|NP_617922.1| - 0.0015 19.1 0.0 0.0035 17.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|20091847|ref|NP_617922.1| - 0.0018 17.7 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|20091847|ref|NP_617922.1| - 0.0023 17.5 0.1 0.022 14.2 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|20091847|ref|NP_617922.1| - 0.0023 18.1 0.0 0.0041 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain IPT PF01745.16 gi|20091847|ref|NP_617922.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase TsaE PF02367.17 gi|20091847|ref|NP_617922.1| - 0.022 14.7 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|20091847|ref|NP_617922.1| - 0.025 14.3 0.1 0.062 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|20091847|ref|NP_617922.1| - 0.027 13.9 0.0 0.098 12.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|20091847|ref|NP_617922.1| - 0.027 14.9 0.0 0.068 13.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|20091847|ref|NP_617922.1| - 0.027 14.2 0.0 0.071 12.8 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|20091847|ref|NP_617922.1| - 0.034 13.2 0.0 0.06 12.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|20091847|ref|NP_617922.1| - 0.039 13.8 0.0 0.086 12.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein PduV-EutP PF10662.9 gi|20091847|ref|NP_617922.1| - 0.043 13.6 0.0 0.091 12.5 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Torsin PF06309.11 gi|20091847|ref|NP_617922.1| - 0.048 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Torsin ABC_tran PF00005.27 gi|20091847|ref|NP_617922.1| - 0.067 13.7 0.0 0.2 12.1 0.0 1.7 2 0 0 2 2 1 0 ABC transporter PhoH PF02562.16 gi|20091847|ref|NP_617922.1| - 0.084 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RsgA_GTPase PF03193.16 gi|20091847|ref|NP_617922.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|20091847|ref|NP_617922.1| - 0.14 12.0 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Lactamase_B_2 PF12706.7 gi|20091849|ref|NP_617924.1| - 3.9e-21 75.5 0.0 1.6e-19 70.2 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20091849|ref|NP_617924.1| - 4.8e-08 33.2 0.0 1.5e-07 31.6 0.0 2.1 1 1 2 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|20091849|ref|NP_617924.1| - 0.00015 21.3 0.0 0.00026 20.6 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease EFP_N PF08207.12 gi|20091849|ref|NP_617924.1| - 0.081 13.0 0.0 0.59 10.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain Alpha-amylase PF00128.24 gi|20091850|ref|NP_617925.1| - 2.6e-26 93.0 0.0 6.8e-16 58.7 0.0 2.3 1 1 0 2 2 2 2 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.18 gi|20091850|ref|NP_617925.1| - 0.012 16.1 0.0 0.032 14.7 0.0 1.7 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain DUF3459 PF11941.8 gi|20091850|ref|NP_617925.1| - 0.059 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) TP_methylase PF00590.20 gi|20091851|ref|NP_617926.1| - 5e-53 180.2 0.1 5.8e-53 180.0 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|20091851|ref|NP_617926.1| - 0.15 12.5 0.2 1.1 9.7 0.1 2.0 1 1 1 2 2 2 0 Radical SAM superfamily HEM4 PF02602.15 gi|20091852|ref|NP_617927.1| - 4.6e-44 150.5 0.1 5.9e-44 150.2 0.1 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Radical_SAM PF04055.21 gi|20091853|ref|NP_617928.1| - 2.8e-24 86.4 0.0 3.5e-23 82.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20091853|ref|NP_617928.1| - 3.4e-11 43.6 0.0 6e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20091853|ref|NP_617928.1| - 2.3e-07 30.9 0.0 4.1e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|20091853|ref|NP_617928.1| - 6.1e-06 26.6 0.1 1.7e-05 25.2 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DUF3334 PF11813.8 gi|20091855|ref|NP_617930.1| - 1.1 9.0 5.0 7.8 6.2 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3334) Trypsin_2 PF13365.6 gi|20091856|ref|NP_617931.1| - 0.00039 21.3 0.2 0.028 15.3 0.0 3.0 1 1 1 2 2 2 1 Trypsin-like peptidase domain Oxidored_molyb PF00174.19 gi|20091857|ref|NP_617932.1| - 2e-38 131.7 0.0 2.8e-38 131.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain APH PF01636.23 gi|20091858|ref|NP_617933.1| - 7.8e-32 111.1 0.0 9.9e-32 110.8 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|20091858|ref|NP_617933.1| - 0.0041 16.4 0.0 0.011 14.9 0.0 1.6 1 1 0 1 1 1 1 Fructosamine kinase Kdo PF06293.14 gi|20091858|ref|NP_617933.1| - 0.0092 15.4 0.0 2.3 7.5 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Fungal_lectin_2 PF18647.1 gi|20091858|ref|NP_617933.1| - 0.059 13.8 0.1 0.15 12.5 0.1 1.6 1 0 0 1 1 1 0 Alpha-galactosyl-binding fungal lectin APH PF01636.23 gi|20091860|ref|NP_617935.1| - 7.2e-06 26.1 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|20091860|ref|NP_617935.1| - 0.071 12.4 0.0 0.17 11.2 0.1 1.5 2 0 0 2 2 2 0 Protein tyrosine kinase HAD_2 PF13419.6 gi|20091861|ref|NP_617936.1| - 4.5e-14 52.9 0.0 9.6e-14 51.9 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20091861|ref|NP_617936.1| - 2.4e-05 24.7 0.0 4e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|20091861|ref|NP_617936.1| - 0.029 13.8 0.6 2.7 7.3 0.1 2.2 1 1 1 2 2 2 0 Putative Phosphatase Hydrolase_like PF13242.6 gi|20091861|ref|NP_617936.1| - 0.094 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 HAD-hyrolase-like Methyltransf_25 PF13649.6 gi|20091862|ref|NP_617937.1| - 2.3e-09 37.9 0.0 5.5e-09 36.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091862|ref|NP_617937.1| - 3.3e-06 27.7 0.0 6.3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091862|ref|NP_617937.1| - 6e-06 26.1 0.0 9.2e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091862|ref|NP_617937.1| - 7.2e-06 25.9 0.0 8.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|20091862|ref|NP_617937.1| - 4e-05 23.3 0.0 5.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|20091862|ref|NP_617937.1| - 0.00012 21.6 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|20091862|ref|NP_617937.1| - 0.002 17.3 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|20091862|ref|NP_617937.1| - 0.0049 17.6 0.0 0.0088 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|20091862|ref|NP_617937.1| - 0.0083 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase DUF938 PF06080.12 gi|20091862|ref|NP_617937.1| - 0.032 14.0 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_15 PF09445.10 gi|20091862|ref|NP_617937.1| - 0.034 13.7 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|20091862|ref|NP_617937.1| - 0.039 13.7 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|20091862|ref|NP_617937.1| - 0.064 12.2 0.0 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_25 PF13649.6 gi|20091863|ref|NP_617938.1| - 3.4e-10 40.5 0.0 6.7e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091863|ref|NP_617938.1| - 7.7e-07 29.7 0.0 1.8e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091863|ref|NP_617938.1| - 5.1e-06 26.4 0.0 9.8e-06 25.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091863|ref|NP_617938.1| - 5.5e-06 26.3 0.0 7.3e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20091863|ref|NP_617938.1| - 7e-06 25.3 0.0 1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|20091863|ref|NP_617938.1| - 9e-05 22.1 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|20091863|ref|NP_617938.1| - 0.00042 21.0 0.0 0.0016 19.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain GidB PF02527.15 gi|20091863|ref|NP_617938.1| - 0.0045 16.3 0.0 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G DREV PF05219.12 gi|20091863|ref|NP_617938.1| - 0.0072 15.5 0.0 0.013 14.6 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Ubie_methyltran PF01209.18 gi|20091863|ref|NP_617938.1| - 0.0094 15.3 0.0 0.018 14.4 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF938 PF06080.12 gi|20091863|ref|NP_617938.1| - 0.015 15.0 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) NodS PF05401.11 gi|20091863|ref|NP_617938.1| - 0.066 12.8 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_15 PF09445.10 gi|20091863|ref|NP_617938.1| - 0.15 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase ABC_tran PF00005.27 gi|20091864|ref|NP_617939.1| - 2.6e-19 70.1 0.0 3.5e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20091864|ref|NP_617939.1| - 8.1e-13 48.7 0.1 1.3e-12 48.0 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20091864|ref|NP_617939.1| - 0.00057 19.8 3.2 0.44 10.3 0.0 2.7 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20091864|ref|NP_617939.1| - 0.0016 18.2 0.1 0.003 17.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|20091864|ref|NP_617939.1| - 0.0017 17.8 0.0 0.0037 16.7 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|20091864|ref|NP_617939.1| - 0.0081 16.4 0.2 0.14 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|20091864|ref|NP_617939.1| - 0.012 15.4 0.1 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|20091864|ref|NP_617939.1| - 0.061 12.7 0.3 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|20091864|ref|NP_617939.1| - 0.18 11.7 0.0 0.69 9.8 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase ATPase PF06745.13 gi|20091864|ref|NP_617939.1| - 0.77 9.1 3.6 2.3 7.5 0.1 2.4 3 0 0 3 3 3 0 KaiC ABC_tran PF00005.27 gi|20091865|ref|NP_617940.1| - 2.2e-29 102.7 0.0 4.7e-29 101.6 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|20091865|ref|NP_617940.1| - 1.8e-06 28.0 0.2 0.0077 16.1 0.2 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20091865|ref|NP_617940.1| - 4.5e-05 23.9 0.4 9e-05 22.9 0.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20091865|ref|NP_617940.1| - 0.00014 22.1 0.5 0.0052 17.1 0.5 2.2 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.12 gi|20091865|ref|NP_617940.1| - 0.00034 21.1 2.5 0.0015 19.0 2.5 2.1 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_25 PF13481.6 gi|20091865|ref|NP_617940.1| - 0.00068 19.3 0.2 0.42 10.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|20091865|ref|NP_617940.1| - 0.0009 18.9 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|20091865|ref|NP_617940.1| - 0.002 17.6 0.0 0.088 12.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|20091865|ref|NP_617940.1| - 0.003 17.0 0.0 0.0075 15.7 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|20091865|ref|NP_617940.1| - 0.014 15.3 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|20091865|ref|NP_617940.1| - 0.019 14.9 0.1 0.043 13.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|20091865|ref|NP_617940.1| - 0.17 12.0 0.0 1.2 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain SBP_bac_5 PF00496.22 gi|20091866|ref|NP_617941.1| - 8.3e-101 337.7 0.3 1.1e-100 337.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Ins134_P3_kin_N PF17927.1 gi|20091866|ref|NP_617941.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain BPD_transp_1 PF00528.22 gi|20091867|ref|NP_617942.1| - 3.6e-37 127.9 12.0 3.6e-37 127.9 12.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2484 PF10658.9 gi|20091867|ref|NP_617942.1| - 0.05 13.9 0.3 0.05 13.9 0.3 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) BPD_transp_1 PF00528.22 gi|20091868|ref|NP_617943.1| - 8.1e-23 81.1 11.2 8.1e-23 81.1 11.2 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20091868|ref|NP_617943.1| - 1.7 8.7 0.0 1.7 8.7 0.0 3.3 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C HAD_2 PF13419.6 gi|20091869|ref|NP_617944.1| - 8.5e-15 55.3 0.0 1.3e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20091869|ref|NP_617944.1| - 1.1e-06 29.0 0.0 5.7e-06 26.8 0.0 2.0 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20091869|ref|NP_617944.1| - 0.00012 22.1 0.0 0.00019 21.4 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like DUF3206 PF11472.8 gi|20091869|ref|NP_617944.1| - 0.15 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) Put_Phosphatase PF06888.12 gi|20091869|ref|NP_617944.1| - 0.17 11.3 0.0 0.62 9.4 0.0 1.8 2 0 0 2 2 2 0 Putative Phosphatase tRNA-synt_1 PF00133.22 gi|20091870|ref|NP_617945.1| - 2.2e-132 442.4 3.0 5.9e-131 437.6 3.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|20091870|ref|NP_617945.1| - 7.8e-37 126.6 0.0 1.5e-36 125.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|20091870|ref|NP_617945.1| - 5.3e-22 78.1 0.1 8.7e-13 47.8 0.0 3.0 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|20091870|ref|NP_617945.1| - 9.3e-06 25.2 0.0 0.025 13.9 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|20091870|ref|NP_617945.1| - 2e-05 24.2 0.0 6.5e-05 22.5 0.0 1.8 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 Peptidase_M48_N PF16491.5 gi|20091871|ref|NP_617946.1| - 0.14 12.0 2.5 0.14 12.0 2.5 1.0 1 0 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices T2SSF PF00482.23 gi|20091873|ref|NP_617948.1| - 6.3e-16 58.5 0.9 1.5e-06 28.1 0.1 3.4 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Spore_III_AB PF09548.10 gi|20091873|ref|NP_617948.1| - 0.00028 21.0 0.2 0.03 14.4 0.5 2.4 2 0 0 2 2 2 2 Stage III sporulation protein AB (spore_III_AB) LMF1 PF06762.14 gi|20091873|ref|NP_617948.1| - 0.34 10.0 4.3 0.072 12.2 0.7 1.7 2 0 0 2 2 2 0 Lipase maturation factor T2SSE PF00437.20 gi|20091874|ref|NP_617949.1| - 4.3e-44 150.6 0.0 6.4e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|20091874|ref|NP_617949.1| - 0.023 15.2 0.1 0.08 13.4 0.1 1.8 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|20091874|ref|NP_617949.1| - 0.087 12.3 0.0 5.2 6.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|20091874|ref|NP_617949.1| - 0.19 12.2 1.5 0.21 12.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|20091875|ref|NP_617950.1| - 5.6e-25 88.0 0.2 6.4e-25 87.9 0.2 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|20091875|ref|NP_617950.1| - 5e-11 42.4 1.2 1.8e-07 30.6 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein Rad51 PF08423.11 gi|20091875|ref|NP_617950.1| - 3.5e-07 29.8 0.2 9.5e-07 28.3 0.2 1.7 1 1 0 1 1 1 1 Rad51 DUF835 PF05763.12 gi|20091875|ref|NP_617950.1| - 0.00072 19.3 0.2 0.0012 18.6 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_25 PF13481.6 gi|20091875|ref|NP_617950.1| - 0.0009 18.9 0.0 0.0089 15.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|20091875|ref|NP_617950.1| - 0.0013 19.1 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Elong_Iki1 PF10483.9 gi|20091875|ref|NP_617950.1| - 0.0026 17.3 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Elongator subunit Iki1 Rsd_AlgQ PF04353.13 gi|20091875|ref|NP_617950.1| - 0.0066 16.4 0.2 0.011 15.7 0.2 1.4 1 0 0 1 1 1 1 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AAA_14 PF13173.6 gi|20091875|ref|NP_617950.1| - 0.014 15.4 0.5 0.23 11.5 0.4 2.3 1 1 0 1 1 1 0 AAA domain RecA PF00154.21 gi|20091875|ref|NP_617950.1| - 0.014 14.9 0.2 0.025 14.0 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Arch_flagellin PF01917.16 gi|20091876|ref|NP_617951.1| - 3.6e-06 27.3 4.9 5.1e-06 26.8 4.9 1.2 1 1 0 1 1 1 1 Archaebacterial flagellin GDE_N PF12439.8 gi|20091876|ref|NP_617951.1| - 0.015 14.7 0.1 0.021 14.2 0.1 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme N terminal TMEM240 PF15207.6 gi|20091876|ref|NP_617951.1| - 0.052 13.2 0.2 0.071 12.8 0.2 1.2 1 0 0 1 1 1 0 TMEM240 family Olfactory_mark PF06554.12 gi|20091876|ref|NP_617951.1| - 0.07 12.9 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 Olfactory marker protein Arch_flagellin PF01917.16 gi|20091877|ref|NP_617952.1| - 6.8e-14 52.4 0.1 8.4e-14 52.1 0.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Sugarporin_N PF11471.8 gi|20091878|ref|NP_617953.1| - 0.02 14.8 0.2 0.036 14.0 0.2 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension CLZ PF16526.5 gi|20091878|ref|NP_617953.1| - 0.044 14.2 0.3 1 9.8 0.0 2.4 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF948 PF06103.11 gi|20091878|ref|NP_617953.1| - 0.13 12.5 0.0 0.49 10.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Merozoite_SPAM PF07133.11 gi|20091878|ref|NP_617953.1| - 0.69 9.9 7.5 4.3 7.3 0.3 2.4 3 0 0 3 3 3 0 Merozoite surface protein (SPAM) FlaC_arch PF05377.11 gi|20091878|ref|NP_617953.1| - 1.5 9.2 7.0 1 9.8 0.2 2.8 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Arch_flagellin PF01917.16 gi|20091879|ref|NP_617954.1| - 9.6e-44 149.4 2.2 1.1e-43 149.2 2.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|20091880|ref|NP_617955.1| - 2e-46 158.2 6.6 2.4e-46 157.9 6.6 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4244 PF14029.6 gi|20091880|ref|NP_617955.1| - 0.027 13.9 2.6 0.67 9.4 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) CheR PF01739.18 gi|20091881|ref|NP_617956.1| - 1.2e-57 194.6 0.0 1.5e-57 194.3 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|20091881|ref|NP_617956.1| - 9.8e-12 44.4 1.2 1.7e-11 43.7 1.2 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|20091881|ref|NP_617956.1| - 3.4e-05 24.5 0.0 0.00012 22.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20091881|ref|NP_617956.1| - 6.5e-05 23.6 0.0 0.0017 19.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091881|ref|NP_617956.1| - 0.0013 19.3 0.0 0.0071 17.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091881|ref|NP_617956.1| - 0.0013 18.5 0.0 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091881|ref|NP_617956.1| - 0.0037 17.1 0.0 0.0053 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CheD PF03975.13 gi|20091882|ref|NP_617957.1| - 1.3e-29 102.5 0.2 2e-29 101.9 0.2 1.3 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|20091883|ref|NP_617958.1| - 1.6e-23 82.3 0.2 1.1e-12 47.7 0.0 2.8 2 1 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|20091883|ref|NP_617958.1| - 1.6e-12 47.4 0.4 9.9e-07 28.9 0.0 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX DsrD PF08679.11 gi|20091883|ref|NP_617958.1| - 0.063 13.5 0.0 0.5 10.7 0.0 2.2 2 0 0 2 2 2 0 Dissimilatory sulfite reductase D (DsrD) CheW PF01584.19 gi|20091884|ref|NP_617959.1| - 6.6e-26 90.6 2.0 5e-25 87.8 0.5 2.7 2 1 0 2 2 2 1 CheW-like domain HATPase_c PF02518.26 gi|20091884|ref|NP_617959.1| - 2.8e-18 66.5 0.2 8.8e-18 64.9 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|20091884|ref|NP_617959.1| - 4.5e-15 55.7 0.0 1.1e-14 54.5 0.0 1.6 1 0 0 1 1 1 1 Hpt domain P2 PF07194.11 gi|20091884|ref|NP_617959.1| - 2.1e-13 50.1 0.1 2.1e-13 50.1 0.1 2.8 3 0 0 3 3 3 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|20091884|ref|NP_617959.1| - 2.8e-13 50.1 1.2 9e-13 48.4 1.2 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|20091884|ref|NP_617959.1| - 3.1e-05 23.8 1.6 0.00077 19.3 1.6 2.5 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|20091884|ref|NP_617959.1| - 0.0021 18.0 0.9 0.0021 18.0 0.9 2.7 2 1 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|20091884|ref|NP_617959.1| - 0.044 13.8 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF2683 PF10884.8 gi|20091884|ref|NP_617959.1| - 0.66 10.3 4.1 0.48 10.7 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2683) CheB_methylest PF01339.17 gi|20091885|ref|NP_617960.1| - 5.9e-54 182.3 0.1 8.7e-54 181.8 0.1 1.2 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|20091885|ref|NP_617960.1| - 3.6e-24 85.1 1.3 1.4e-23 83.2 0.4 2.2 2 1 0 2 2 2 1 Response regulator receiver domain MTD PF01993.18 gi|20091885|ref|NP_617960.1| - 0.0029 17.0 0.6 0.014 14.8 0.2 2.0 1 1 1 2 2 2 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Lipase_GDSL PF00657.22 gi|20091885|ref|NP_617960.1| - 0.059 13.3 0.0 0.094 12.7 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase Glyco_transf_88 PF16849.5 gi|20091885|ref|NP_617960.1| - 0.18 10.7 0.1 0.25 10.2 0.1 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 88 Response_reg PF00072.24 gi|20091886|ref|NP_617961.1| - 1.5e-30 105.7 0.9 1.6e-30 105.5 0.9 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.12 gi|20091887|ref|NP_617962.1| - 2.3e-16 60.2 0.1 5.7e-16 58.9 0.1 1.6 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea HTH_45 PF14947.6 gi|20091887|ref|NP_617962.1| - 0.0091 16.0 0.1 0.16 12.0 0.1 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|20091887|ref|NP_617962.1| - 0.11 12.1 0.0 8.9 6.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 CheW PF01584.19 gi|20091888|ref|NP_617963.1| - 1.3e-37 128.5 0.3 1.6e-37 128.2 0.3 1.1 1 0 0 1 1 1 1 CheW-like domain Phage_TAC_3 PF06896.11 gi|20091888|ref|NP_617963.1| - 0.0089 16.6 0.1 0.29 11.7 0.0 2.3 1 1 1 2 2 2 1 Phage tail assembly chaperone proteins, TAC MCPsignal PF00015.21 gi|20091889|ref|NP_617964.1| - 1.6e-38 132.2 44.2 1.2e-37 129.4 19.3 4.1 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_3 PF08447.12 gi|20091889|ref|NP_617964.1| - 1.1e-16 60.9 0.1 5.8e-16 58.6 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|20091889|ref|NP_617964.1| - 5.7e-13 49.1 0.0 2.5e-06 27.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|20091889|ref|NP_617964.1| - 1.2e-11 44.7 0.0 3.7e-06 27.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|20091889|ref|NP_617964.1| - 4.1e-09 36.4 0.0 0.00044 20.2 0.0 2.8 2 0 0 2 2 2 2 PAS fold DUF948 PF06103.11 gi|20091889|ref|NP_617964.1| - 8.6e-05 22.7 32.6 0.099 12.9 4.0 6.1 5 2 1 6 6 6 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|20091889|ref|NP_617964.1| - 0.001 19.4 4.9 0.29 11.5 0.0 4.6 5 0 0 5 5 4 1 HAMP domain PAS_6 PF08348.11 gi|20091889|ref|NP_617964.1| - 0.028 14.3 0.2 1 9.3 0.0 3.4 3 0 0 3 3 3 0 YheO-like PAS domain Methyltransf_28 PF02636.17 gi|20091889|ref|NP_617964.1| - 0.036 13.7 2.4 0.043 13.4 0.0 2.2 2 1 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Imm7 PF15585.6 gi|20091889|ref|NP_617964.1| - 0.44 10.8 3.4 6.7 7.0 0.2 3.5 3 0 0 3 3 3 0 Immunity protein 7 Vps53_N PF04100.12 gi|20091889|ref|NP_617964.1| - 1.8 7.4 26.5 0.89 8.4 2.2 3.6 2 1 1 3 3 3 0 Vps53-like, N-terminal Abi_C PF14355.6 gi|20091889|ref|NP_617964.1| - 3.3 7.9 8.3 8.7 6.5 0.7 4.1 3 1 1 4 4 4 0 Abortive infection C-terminus Prominin PF05478.11 gi|20091889|ref|NP_617964.1| - 7.3 4.4 19.1 0.22 9.5 3.0 2.4 2 0 0 2 2 2 0 Prominin Fib_alpha PF08702.10 gi|20091889|ref|NP_617964.1| - 7.4 6.8 25.0 1 9.6 5.4 4.4 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family DrsE PF02635.15 gi|20091890|ref|NP_617965.1| - 2.8e-10 40.6 0.0 3.4e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|20091890|ref|NP_617965.1| - 3.6e-09 36.7 0.1 3.6e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family HMG-CoA_red PF00368.18 gi|20091891|ref|NP_617966.1| - 4.8e-136 453.6 2.4 5.5e-136 453.4 2.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Ub-Mut7C PF14451.6 gi|20091891|ref|NP_617966.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin Baculo_11_kDa PF06143.11 gi|20091892|ref|NP_617967.1| - 0.1 12.2 0.6 0.19 11.3 0.6 1.5 1 1 0 1 1 1 0 Baculovirus 11 kDa family DUF898 PF05987.13 gi|20091892|ref|NP_617967.1| - 0.14 11.2 1.0 0.16 11.0 1.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF3955 PF13127.6 gi|20091892|ref|NP_617967.1| - 0.5 10.2 9.3 0.24 11.3 1.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3955) POR_N PF01855.19 gi|20091893|ref|NP_617968.1| - 4.4e-53 180.4 0.0 7e-53 179.7 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|20091893|ref|NP_617968.1| - 1.4e-41 142.5 0.1 2.5e-41 141.7 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|20091893|ref|NP_617968.1| - 9.8e-07 28.5 0.0 1.9e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|20091893|ref|NP_617968.1| - 5.7e-05 23.4 0.0 0.00011 22.4 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|20091894|ref|NP_617969.1| - 3.1e-30 105.0 0.0 4.3e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|20091894|ref|NP_617969.1| - 3e-28 97.7 2.2 3.5e-28 97.5 1.2 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Arch_flagellin PF01917.16 gi|20091895|ref|NP_617970.1| - 2.9e-29 102.4 9.3 3.4e-29 102.1 9.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Pilin_N PF07790.11 gi|20091895|ref|NP_617970.1| - 0.017 16.0 1.7 0.017 16.0 1.7 1.8 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Arch_fla_DE PF04659.13 gi|20091896|ref|NP_617971.1| - 0.007 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal flagella protein Arch_flagellin PF01917.16 gi|20091897|ref|NP_617972.1| - 3.9e-05 23.9 0.0 8.1e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|20091898|ref|NP_617973.1| - 1.3e-06 28.7 0.7 1.7e-06 28.3 0.7 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin ATPase PF06745.13 gi|20091899|ref|NP_617974.1| - 1.6e-20 73.4 0.0 1.9e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|20091899|ref|NP_617974.1| - 4.8e-05 23.0 0.0 7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|20091899|ref|NP_617974.1| - 0.00018 20.8 0.7 0.00097 18.4 0.1 1.9 2 0 0 2 2 2 1 PAXNEB protein Rad51 PF08423.11 gi|20091899|ref|NP_617974.1| - 0.00023 20.5 0.1 0.00044 19.6 0.1 1.5 1 1 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|20091899|ref|NP_617974.1| - 0.015 14.7 0.0 0.034 13.5 0.0 1.6 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain RecA PF00154.21 gi|20091899|ref|NP_617974.1| - 0.021 14.3 0.0 0.062 12.8 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein DAP3 PF10236.9 gi|20091899|ref|NP_617974.1| - 0.028 13.6 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATPase_2 PF01637.18 gi|20091899|ref|NP_617974.1| - 0.051 13.5 0.1 0.074 12.9 0.1 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CobU PF02283.16 gi|20091899|ref|NP_617974.1| - 0.09 12.3 0.0 3.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.6 gi|20091899|ref|NP_617974.1| - 0.1 12.6 0.2 1.4 8.9 0.2 2.3 1 1 0 1 1 1 0 AAA domain Elong_Iki1 PF10483.9 gi|20091899|ref|NP_617974.1| - 0.15 11.5 0.0 0.21 11.1 0.0 1.3 1 1 0 1 1 1 0 Elongator subunit Iki1 NPP PF08384.10 gi|20091899|ref|NP_617974.1| - 0.32 11.1 3.1 1.5 9.0 0.4 2.7 3 0 0 3 3 3 0 Pro-opiomelanocortin, N-terminal region T2SSE PF00437.20 gi|20091900|ref|NP_617975.1| - 8.1e-46 156.3 0.0 1.3e-45 155.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|20091900|ref|NP_617975.1| - 0.00023 20.8 0.0 0.00058 19.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|20091900|ref|NP_617975.1| - 0.021 15.3 0.0 0.081 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|20091900|ref|NP_617975.1| - 0.087 12.3 0.0 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region T2SSF PF00482.23 gi|20091901|ref|NP_617976.1| - 4.6e-09 36.3 3.4 4.7e-05 23.3 0.0 3.5 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F AgrB PF04647.15 gi|20091901|ref|NP_617976.1| - 0.008 15.5 11.8 0.008 15.5 11.8 2.2 2 0 0 2 2 2 1 Accessory gene regulator B Ac81 PF05820.11 gi|20091901|ref|NP_617976.1| - 1.4 8.4 6.1 0.43 10.1 0.5 2.9 3 0 0 3 3 3 0 Baculoviridae AC81 E1-E2_ATPase PF00122.20 gi|20091901|ref|NP_617976.1| - 4.1 6.9 8.7 7.4 6.0 2.1 2.7 1 1 0 2 2 2 0 E1-E2 ATPase MRPL52 PF18699.1 gi|20091902|ref|NP_617977.1| - 0.27 11.4 6.1 0.92 9.7 6.1 1.9 1 0 0 1 1 1 0 Mitoribosomal protein mL52 DUF4337 PF14235.6 gi|20091902|ref|NP_617977.1| - 0.37 10.9 3.4 0.82 9.8 3.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DivIC PF04977.15 gi|20091902|ref|NP_617977.1| - 1.9 8.3 7.0 4.1 7.2 7.0 1.5 1 0 0 1 1 1 0 Septum formation initiator Aconitase PF00330.20 gi|20091903|ref|NP_617978.1| - 2.6e-102 343.2 3.9 6.7e-67 226.5 0.1 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) PEGA PF08308.11 gi|20091904|ref|NP_617979.1| - 5.5e-21 74.2 0.8 9.5e-21 73.5 0.2 1.8 2 0 0 2 2 2 1 PEGA domain CarboxypepD_reg PF13620.6 gi|20091904|ref|NP_617979.1| - 0.0012 19.1 0.1 0.0037 17.5 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|20091904|ref|NP_617979.1| - 0.06 13.1 0.0 1.5 8.6 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II Disaggr_repeat PF06848.11 gi|20091905|ref|NP_617980.1| - 2.8e-167 551.7 5.3 2e-87 291.5 0.4 2.4 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|20091905|ref|NP_617980.1| - 2.5e-87 291.6 16.7 2.5e-87 291.6 16.7 3.2 2 1 1 3 3 3 1 Disaggregatase related Beta_helix PF13229.6 gi|20091905|ref|NP_617980.1| - 2e-14 53.7 46.2 3.2e-13 49.8 16.4 4.1 3 1 1 4 4 4 2 Right handed beta helix region DUF5123 PF17161.4 gi|20091905|ref|NP_617980.1| - 8.2e-06 26.9 1.3 8.2e-06 26.9 1.3 4.1 3 1 1 4 4 4 1 Domain of unknown function (DUF5123) Pectate_lyase_3 PF12708.7 gi|20091905|ref|NP_617980.1| - 2.2e-05 24.4 3.0 2.2e-05 24.4 3.0 3.5 2 1 2 4 4 4 1 Pectate lyase superfamily protein TGFb_propeptide PF00688.18 gi|20091905|ref|NP_617980.1| - 0.00015 21.6 0.0 2.1 8.0 0.0 3.8 4 0 0 4 4 4 2 TGF-beta propeptide PhoU PF01895.19 gi|20091906|ref|NP_617981.1| - 1.2e-14 54.6 5.6 2.3e-13 50.4 1.2 3.1 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|20091906|ref|NP_617981.1| - 7e-06 25.8 0.0 2e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin SUR7 PF06687.12 gi|20091907|ref|NP_617982.1| - 0.002 17.8 0.5 0.0029 17.3 0.5 1.2 1 0 0 1 1 1 1 SUR7/PalI family DUF2721 PF11026.8 gi|20091907|ref|NP_617982.1| - 1.5 8.7 7.4 1 9.3 2.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) MIG-14_Wnt-bd PF06664.12 gi|20091908|ref|NP_617983.1| - 0.0017 17.6 1.8 0.0018 17.5 1.8 1.0 1 0 0 1 1 1 1 Wnt-binding factor required for Wnt secretion DUF4131 PF13567.6 gi|20091908|ref|NP_617983.1| - 0.074 12.7 1.4 0.1 12.2 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Polysacc_synt_C PF14667.6 gi|20091908|ref|NP_617983.1| - 0.42 10.7 9.4 0.45 10.6 9.4 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Baculo_11_kDa PF06143.11 gi|20091908|ref|NP_617983.1| - 0.42 10.2 3.7 0.24 11.0 0.6 1.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF11 PF01345.18 gi|20091909|ref|NP_617984.1| - 5.5e-06 26.6 0.2 0.00011 22.4 0.1 2.7 3 0 0 3 3 3 1 Domain of unknown function DUF11 Top6b_C PF18000.1 gi|20091909|ref|NP_617984.1| - 0.0016 18.6 0.2 0.0089 16.2 0.1 2.4 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF4352 PF11611.8 gi|20091909|ref|NP_617984.1| - 0.015 15.6 0.3 5.3 7.4 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4352) bMG10 PF17973.1 gi|20091909|ref|NP_617984.1| - 0.15 12.3 0.6 16 5.7 0.0 2.9 1 1 1 2 2 2 0 Bacterial Alpha-2-macroglobulin MG10 domain Tafi-CsgC PF10610.9 gi|20091909|ref|NP_617984.1| - 0.17 12.1 0.0 0.91 9.8 0.0 2.2 1 1 1 2 2 2 0 Thin aggregative fimbriae synthesis protein FGE-sulfatase PF03781.16 gi|20091910|ref|NP_617985.1| - 1.2e-49 169.3 3.1 9.8e-49 166.3 3.1 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 PBP_like_2 PF12849.7 gi|20091911|ref|NP_617986.1| - 5.1e-19 69.0 7.3 6.7e-19 68.6 7.3 1.1 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|20091911|ref|NP_617986.1| - 9.1e-08 31.4 0.7 2.1e-07 30.2 0.7 1.6 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|20091911|ref|NP_617986.1| - 1.8e-05 24.9 0.9 3.9e-05 23.7 0.9 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|20091911|ref|NP_617986.1| - 0.00038 20.3 1.0 0.00057 19.7 1.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Pilin_N PF07790.11 gi|20091911|ref|NP_617986.1| - 0.0012 19.7 7.5 0.0043 17.9 7.5 2.1 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4392 PF14336.6 gi|20091911|ref|NP_617986.1| - 0.0014 18.1 0.1 0.0024 17.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4392) SfLAP PF11139.8 gi|20091911|ref|NP_617986.1| - 3.4 7.0 7.3 51 3.2 7.3 2.1 1 1 0 1 1 1 0 Sap, sulfolipid-1-addressing protein BPD_transp_1 PF00528.22 gi|20091912|ref|NP_617987.1| - 5.1e-19 68.7 14.5 5.1e-19 68.7 14.5 2.7 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|20091913|ref|NP_617988.1| - 7.5e-21 74.7 13.2 7.5e-21 74.7 13.2 2.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component T2SSE PF00437.20 gi|20091914|ref|NP_617989.1| - 8e-48 162.9 0.0 1.2e-47 162.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Rib_5-P_isom_A PF06026.14 gi|20091914|ref|NP_617989.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) T2SSF PF00482.23 gi|20091915|ref|NP_617990.1| - 1.4e-15 57.4 2.1 1.4e-15 57.4 2.1 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|20091915|ref|NP_617990.1| - 0.026 13.3 3.3 1.5 7.5 0.4 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) T2SSF PF00482.23 gi|20091916|ref|NP_617991.1| - 1.3e-13 51.0 0.9 3.3e-13 49.7 0.3 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Big_1 PF02369.16 gi|20091916|ref|NP_617991.1| - 7e-06 26.0 0.8 1.6e-05 24.8 0.8 1.6 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|20091916|ref|NP_617991.1| - 8.9e-05 22.7 1.4 8.9e-05 22.7 1.4 1.9 2 0 0 2 2 2 1 Invasin, domain 3 MG4 PF17789.1 gi|20091916|ref|NP_617991.1| - 0.0003 20.9 0.5 0.0019 18.3 0.2 2.3 2 0 0 2 2 2 1 Macroglobulin domain MG4 CarboxypepD_reg PF13620.6 gi|20091916|ref|NP_617991.1| - 0.0071 16.6 4.3 0.0089 16.3 3.2 1.7 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|20091916|ref|NP_617991.1| - 0.011 15.7 0.1 0.027 14.5 0.1 1.6 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain ATPase PF06745.13 gi|20091917|ref|NP_617992.1| - 9.9e-13 48.0 0.0 2.1e-12 46.9 0.0 1.4 1 1 0 1 1 1 1 KaiC GvpD PF07088.11 gi|20091917|ref|NP_617992.1| - 0.0013 17.5 0.0 0.27 9.8 0.0 2.1 1 1 1 2 2 2 2 GvpD gas vesicle protein Elong_Iki1 PF10483.9 gi|20091917|ref|NP_617992.1| - 0.13 11.7 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 NosD PF05048.13 gi|20091919|ref|NP_617994.1| - 2.7e-130 432.8 119.1 1.1e-54 185.3 40.1 4.4 2 2 2 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20091919|ref|NP_617994.1| - 2.8e-50 170.3 130.2 5.4e-27 94.6 33.1 5.9 3 2 3 6 6 6 5 Right handed beta helix region PKD PF00801.20 gi|20091919|ref|NP_617994.1| - 9.1e-10 38.3 2.8 3.2e-09 36.5 2.8 2.0 1 0 0 1 1 1 1 PKD domain Arc_PepC_II PF06847.11 gi|20091920|ref|NP_617995.1| - 1.1e-30 105.9 0.1 1.1e-30 105.9 0.1 1.7 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|20091920|ref|NP_617995.1| - 8.5e-15 55.1 8.5 8.5e-15 55.1 8.5 2.2 1 1 1 2 2 2 1 Type IV leader peptidase family LMWPc PF01451.21 gi|20091921|ref|NP_617996.1| - 1.5e-18 67.6 0.1 1.9e-18 67.2 0.1 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PhoU PF01895.19 gi|20091922|ref|NP_617997.1| - 2e-20 73.0 14.0 3.7e-18 65.8 2.3 3.3 3 1 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|20091922|ref|NP_617997.1| - 9.6e-08 31.8 0.0 3e-07 30.2 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin KORA PF16509.5 gi|20091922|ref|NP_617997.1| - 0.11 12.8 0.2 47 4.3 0.0 3.3 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor DUF2795 PF11387.8 gi|20091923|ref|NP_617998.1| - 3.3e-12 46.4 0.0 4.8e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) DUF2795 PF11387.8 gi|20091925|ref|NP_618000.1| - 1.4e-13 50.8 0.0 1.9e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) Na_H_Exchanger PF00999.21 gi|20091926|ref|NP_618001.1| - 1.4e-61 208.4 55.4 2e-61 207.9 55.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|20091926|ref|NP_618001.1| - 2.3e-24 85.9 0.6 5.5e-24 84.7 0.6 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|20091926|ref|NP_618001.1| - 4.3e-17 61.7 0.1 9.6e-17 60.6 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain DUF3270 PF11674.8 gi|20091926|ref|NP_618001.1| - 0.06 13.5 6.0 2.5 8.3 2.6 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) DUF308 PF03729.13 gi|20091928|ref|NP_618003.1| - 0.066 13.6 6.3 0.083 13.2 6.3 1.1 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) YdjM PF04307.14 gi|20091929|ref|NP_618004.1| - 1e-12 47.7 1.0 1.2e-12 47.5 1.0 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2227 PF09988.9 gi|20091929|ref|NP_618004.1| - 0.019 14.9 3.2 2.2 8.1 0.1 2.7 1 1 1 2 2 2 0 Uncharacterized metal-binding protein (DUF2227) Putative_PNPOx PF01243.20 gi|20091931|ref|NP_618006.1| - 1.2e-08 35.0 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Acetyltransf_10 PF13673.7 gi|20091932|ref|NP_618007.1| - 1.3e-13 51.0 0.0 1.6e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20091932|ref|NP_618007.1| - 2.3e-10 40.7 0.0 3.3e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20091932|ref|NP_618007.1| - 2.4e-10 40.7 0.0 4e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20091932|ref|NP_618007.1| - 0.00011 22.1 0.0 0.00023 21.1 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|20091932|ref|NP_618007.1| - 0.044 13.5 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ MULE PF10551.9 gi|20091933|ref|NP_618008.1| - 5.9e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20091933|ref|NP_618008.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20091933|ref|NP_618008.1| - 0.021 14.8 0.1 0.063 13.3 0.1 1.9 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20091933|ref|NP_618008.1| - 0.026 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20091933|ref|NP_618008.1| - 0.04 13.8 1.1 0.093 12.6 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20091933|ref|NP_618008.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20091933|ref|NP_618008.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20091933|ref|NP_618008.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20091933|ref|NP_618008.1| - 0.17 12.0 3.4 0.39 10.8 3.4 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20091933|ref|NP_618008.1| - 0.25 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20091933|ref|NP_618008.1| - 6.9 6.7 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger UPF0228 PF05727.11 gi|20091935|ref|NP_618010.1| - 8.2e-42 141.9 7.3 1.3e-41 141.3 5.3 1.9 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0228) Lactonase PF10282.9 gi|20091936|ref|NP_618011.1| - 3.4e-12 46.3 0.3 6.6e-08 32.2 0.1 2.7 2 1 0 2 2 2 2 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|20091936|ref|NP_618011.1| - 1.6e-06 27.9 3.1 0.0072 15.9 1.0 2.8 1 1 0 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region Cytochrom_D1 PF02239.16 gi|20091936|ref|NP_618011.1| - 7.7e-06 24.7 0.4 0.031 12.8 0.1 2.3 1 1 1 2 2 2 2 Cytochrome D1 heme domain PQQ PF01011.21 gi|20091936|ref|NP_618011.1| - 0.00018 21.3 4.8 0.015 15.2 0.3 3.9 4 0 0 4 4 4 1 PQQ enzyme repeat PQQ_3 PF13570.6 gi|20091936|ref|NP_618011.1| - 0.0021 18.5 8.0 0.41 11.2 1.1 3.7 3 0 0 3 3 3 2 PQQ-like domain Arylesterase PF01731.20 gi|20091936|ref|NP_618011.1| - 0.0071 16.5 3.0 8.6 6.6 0.1 3.8 2 2 2 4 4 4 1 Arylesterase Me-amine-dh_H PF06433.11 gi|20091936|ref|NP_618011.1| - 0.0076 15.2 0.6 0.57 9.0 0.0 2.8 2 1 1 3 3 3 1 Methylamine dehydrogenase heavy chain (MADH) WD40_3 PF15911.5 gi|20091936|ref|NP_618011.1| - 0.017 15.1 0.6 11 6.1 0.1 3.0 2 0 0 2 2 2 0 WD domain, G-beta repeat PD40 PF07676.12 gi|20091936|ref|NP_618011.1| - 0.023 14.6 0.0 0.85 9.6 0.1 2.7 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat ANAPC4_WD40 PF12894.7 gi|20091936|ref|NP_618011.1| - 0.028 14.7 0.0 0.37 11.1 0.0 2.6 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain DUF1513 PF07433.11 gi|20091936|ref|NP_618011.1| - 0.068 12.2 0.1 0.39 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1513) PBCV_basic_adap PF08789.10 gi|20091936|ref|NP_618011.1| - 0.29 11.3 1.7 19 5.5 0.0 3.9 4 1 0 4 4 4 0 PBCV-specific basic adaptor domain NHL PF01436.21 gi|20091936|ref|NP_618011.1| - 0.3 11.2 12.4 1.7 8.8 0.2 5.1 6 0 0 6 6 6 0 NHL repeat Kelch_1 PF01344.25 gi|20091936|ref|NP_618011.1| - 0.69 9.6 3.5 13 5.4 0.4 4.0 4 1 0 4 4 4 0 Kelch motif Kelch_3 PF13415.6 gi|20091936|ref|NP_618011.1| - 4.8 7.6 6.8 7.5 7.0 0.0 4.0 5 0 0 5 5 5 0 Galactose oxidase, central domain UPF0228 PF05727.11 gi|20091937|ref|NP_618012.1| - 1.2e-53 180.2 5.8 1.7e-53 179.7 5.8 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) DUF963 PF06131.11 gi|20091937|ref|NP_618012.1| - 2.4e-12 46.0 24.7 2.4e-12 46.0 24.7 2.2 1 1 1 2 2 2 2 Schizosaccharomyces pombe repeat of unknown function (DUF963) DUF2140 PF09911.9 gi|20091937|ref|NP_618012.1| - 0.038 13.5 0.3 0.073 12.6 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) ExbD PF02472.16 gi|20091937|ref|NP_618012.1| - 1.6 8.9 4.5 38 4.5 4.5 2.3 1 1 0 1 1 1 0 Biopolymer transport protein ExbD/TolR Lactonase PF10282.9 gi|20091938|ref|NP_618013.1| - 2.9e-19 69.6 5.5 5.7e-07 29.1 1.0 4.4 2 2 2 4 4 4 3 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|20091938|ref|NP_618013.1| - 1.1e-11 43.9 5.3 0.00098 17.7 1.2 3.5 1 1 2 3 3 3 3 Cytochrome D1 heme domain SGL PF08450.12 gi|20091938|ref|NP_618013.1| - 3.1e-11 43.3 9.1 0.00022 20.9 1.2 5.0 1 1 2 4 4 4 4 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|20091938|ref|NP_618013.1| - 2.6e-08 33.5 25.7 0.25 11.4 0.0 8.0 9 0 0 9 9 8 4 NHL repeat Arylesterase PF01731.20 gi|20091938|ref|NP_618013.1| - 6.8e-07 29.4 10.9 0.84 9.9 0.0 6.1 1 1 4 7 7 7 3 Arylesterase ANAPC4_WD40 PF12894.7 gi|20091938|ref|NP_618013.1| - 2.1e-05 24.7 0.6 0.59 10.5 0.0 4.6 2 1 3 5 5 5 2 Anaphase-promoting complex subunit 4 WD40 domain PD40 PF07676.12 gi|20091938|ref|NP_618013.1| - 2.5e-05 24.1 0.4 0.93 9.5 0.1 4.1 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat Me-amine-dh_H PF06433.11 gi|20091938|ref|NP_618013.1| - 0.0032 16.4 10.4 0.24 10.2 0.1 4.6 1 1 3 6 6 6 2 Methylamine dehydrogenase heavy chain (MADH) WD40_3 PF15911.5 gi|20091938|ref|NP_618013.1| - 0.0072 16.3 2.4 5.4 7.1 0.1 3.9 3 0 0 3 3 3 1 WD domain, G-beta repeat Kelch_3 PF13415.6 gi|20091938|ref|NP_618013.1| - 0.016 15.5 8.8 12 6.4 0.0 6.2 7 0 0 7 7 7 0 Galactose oxidase, central domain SBP56 PF05694.11 gi|20091938|ref|NP_618013.1| - 0.018 13.9 0.1 1.5 7.6 0.0 3.5 2 1 2 4 4 4 0 56kDa selenium binding protein (SBP56) PQQ_3 PF13570.6 gi|20091938|ref|NP_618013.1| - 0.035 14.6 19.7 0.71 10.4 1.3 5.6 6 0 0 6 6 5 0 PQQ-like domain PQQ PF01011.21 gi|20091938|ref|NP_618013.1| - 0.038 13.9 0.3 0.038 13.9 0.3 5.9 7 0 0 7 7 6 0 PQQ enzyme repeat Glu_cyclase_2 PF05096.12 gi|20091938|ref|NP_618013.1| - 0.047 13.1 1.4 0.44 10.0 0.5 2.9 2 1 0 2 2 2 0 Glutamine cyclotransferase Coatomer_WDAD PF04053.14 gi|20091938|ref|NP_618013.1| - 0.061 12.3 8.6 1.4 7.9 8.6 2.5 1 1 0 1 1 1 0 Coatomer WD associated region DUF5130 PF17174.4 gi|20091938|ref|NP_618013.1| - 0.087 13.0 13.0 0.22 11.7 1.0 3.5 2 1 2 4 4 4 0 Domain of unknown function (DUF5130) Arm-DNA-bind_3 PF13356.6 gi|20091938|ref|NP_618013.1| - 0.09 13.2 0.0 45 4.5 0.0 3.9 3 1 0 3 3 3 0 Arm DNA-binding domain DUF1513 PF07433.11 gi|20091938|ref|NP_618013.1| - 0.55 9.3 4.3 8.1 5.4 0.1 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF1513) FlaG PF03646.15 gi|20091938|ref|NP_618013.1| - 0.64 10.2 23.9 1.1 9.5 0.1 6.6 8 0 0 8 8 7 0 FlaG protein HEV_ORF1 PF02444.16 gi|20091938|ref|NP_618013.1| - 9.7 6.8 9.2 6.8 7.3 0.3 3.6 2 1 2 4 4 4 0 Hepatitis E virus ORF-2 (Putative capsid protein) Peptidase_C39_2 PF13529.6 gi|20091939|ref|NP_618014.1| - 9.4e-17 61.9 0.8 9.4e-17 61.9 0.8 2.3 2 1 1 3 3 3 1 Peptidase_C39 like family Peptidase_C70 PF12385.8 gi|20091939|ref|NP_618014.1| - 1.7e-05 24.8 0.0 4.1e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 Peptidase_C39 PF03412.15 gi|20091939|ref|NP_618014.1| - 0.075 12.8 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Peptidase C39 family Lactonase PF10282.9 gi|20091940|ref|NP_618015.1| - 1.4e-19 70.5 5.3 1.3e-09 37.8 0.7 4.3 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|20091940|ref|NP_618015.1| - 1.9e-10 39.8 5.6 1.8e-05 23.5 0.9 2.7 1 1 2 3 3 3 2 Cytochrome D1 heme domain SGL PF08450.12 gi|20091940|ref|NP_618015.1| - 1.7e-08 34.3 7.6 0.0017 18.0 0.3 4.1 1 1 2 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|20091940|ref|NP_618015.1| - 3.2e-08 33.2 13.9 0.18 11.9 0.0 7.4 8 0 0 8 8 8 3 NHL repeat Arylesterase PF01731.20 gi|20091940|ref|NP_618015.1| - 0.00021 21.4 8.8 0.81 9.9 0.2 4.9 2 2 3 5 5 5 3 Arylesterase PD40 PF07676.12 gi|20091940|ref|NP_618015.1| - 0.0052 16.7 0.0 22 5.1 0.0 4.1 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat PCC_BT PF18140.1 gi|20091940|ref|NP_618015.1| - 0.018 15.4 6.3 0.16 12.3 0.3 3.5 1 1 4 5 5 5 0 Propionyl-coenzyme A carboxylase BT domain PQQ PF01011.21 gi|20091940|ref|NP_618015.1| - 1.3 9.1 17.0 5.9 7.0 0.1 6.2 7 0 0 7 7 7 0 PQQ enzyme repeat IstB_IS21 PF01695.17 gi|20091941|ref|NP_618016.1| - 1.5e-66 223.5 0.0 2.4e-66 222.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20091941|ref|NP_618016.1| - 3.5e-05 23.8 0.0 7e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20091941|ref|NP_618016.1| - 9.4e-05 22.8 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|20091941|ref|NP_618016.1| - 0.00076 19.8 0.1 0.0043 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20091941|ref|NP_618016.1| - 0.0015 18.0 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein RNA_helicase PF00910.22 gi|20091941|ref|NP_618016.1| - 0.002 18.5 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RuvB_N PF05496.12 gi|20091941|ref|NP_618016.1| - 0.0026 17.5 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain RsgA_GTPase PF03193.16 gi|20091941|ref|NP_618016.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|20091941|ref|NP_618016.1| - 0.022 15.1 0.0 0.1 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.6 gi|20091941|ref|NP_618016.1| - 0.034 14.6 1.4 0.26 11.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|20091941|ref|NP_618016.1| - 0.035 14.4 0.0 6.1 7.1 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20091941|ref|NP_618016.1| - 0.047 13.3 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|20091941|ref|NP_618016.1| - 0.089 12.2 0.0 0.39 10.1 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|20091941|ref|NP_618016.1| - 0.13 12.8 0.6 0.27 11.8 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|20091941|ref|NP_618016.1| - 0.4 10.4 1.3 33 4.1 0.1 2.9 1 1 2 3 3 3 0 AAA domain rve PF00665.26 gi|20091942|ref|NP_618017.1| - 1.2e-24 86.8 0.0 2.2e-24 85.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20091942|ref|NP_618017.1| - 8.7e-05 22.2 0.0 0.00022 20.9 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20091942|ref|NP_618017.1| - 0.00013 21.9 0.2 0.0017 18.3 0.0 2.5 2 1 0 2 2 2 1 Winged helix-turn helix HTH_38 PF13936.6 gi|20091942|ref|NP_618017.1| - 0.014 15.1 0.1 0.034 13.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20091942|ref|NP_618017.1| - 0.018 14.7 0.0 0.046 13.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 TnsD PF15978.5 gi|20091942|ref|NP_618017.1| - 0.02 13.9 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D MerR PF00376.23 gi|20091942|ref|NP_618017.1| - 0.022 14.5 0.1 0.055 13.3 0.1 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_5 PF01022.20 gi|20091942|ref|NP_618017.1| - 0.023 14.5 0.0 0.73 9.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|20091942|ref|NP_618017.1| - 0.043 13.6 0.3 0.25 11.2 0.0 2.3 2 1 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 gi|20091942|ref|NP_618017.1| - 0.057 13.5 0.2 1.7 8.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|20091942|ref|NP_618017.1| - 0.086 12.8 0.1 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|20091942|ref|NP_618017.1| - 0.092 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.11 gi|20091942|ref|NP_618017.1| - 0.094 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_IclR PF09339.10 gi|20091942|ref|NP_618017.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MetOD2 PF18548.1 gi|20091942|ref|NP_618017.1| - 0.13 12.4 0.0 12 6.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 UPF0228 PF05727.11 gi|20091943|ref|NP_618018.1| - 6e-52 174.7 5.7 9.2e-52 174.1 5.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) ETRAMP PF09716.10 gi|20091943|ref|NP_618018.1| - 0.063 13.3 0.4 0.35 11.0 0.4 2.1 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) CCG PF02754.16 gi|20091944|ref|NP_618019.1| - 1.8e-17 63.3 6.9 4.7e-08 33.1 2.3 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Qua1 PF16274.5 gi|20091944|ref|NP_618019.1| - 0.062 13.1 0.1 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 Qua1 domain Fer4_8 PF13183.6 gi|20091945|ref|NP_618020.1| - 8.4e-11 42.2 6.4 2e-10 41.0 6.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20091945|ref|NP_618020.1| - 1.8e-08 34.3 5.4 4.2e-08 33.2 5.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20091945|ref|NP_618020.1| - 2.1e-08 34.2 7.6 4.6e-08 33.1 7.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20091945|ref|NP_618020.1| - 3.2e-07 30.8 8.9 6.8e-07 29.7 8.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20091945|ref|NP_618020.1| - 3.4e-07 30.7 7.8 6.8e-07 29.8 7.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20091945|ref|NP_618020.1| - 2.7e-05 24.3 2.0 2.7e-05 24.3 2.0 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20091945|ref|NP_618020.1| - 0.00019 21.3 3.2 0.00019 21.3 3.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20091945|ref|NP_618020.1| - 0.00049 20.1 2.8 0.00049 20.1 2.8 2.0 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20091945|ref|NP_618020.1| - 0.00058 20.8 12.6 0.0025 18.7 10.8 2.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|20091945|ref|NP_618020.1| - 0.00085 20.1 2.3 0.045 14.6 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20091945|ref|NP_618020.1| - 0.0012 18.6 11.6 0.0015 18.3 3.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20091945|ref|NP_618020.1| - 0.015 15.4 8.3 0.068 13.3 8.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20091945|ref|NP_618020.1| - 0.16 12.5 0.7 0.16 12.5 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20091945|ref|NP_618020.1| - 0.49 11.5 15.9 0.73 10.9 5.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain FlpD PF02662.16 gi|20091946|ref|NP_618021.1| - 1.6e-15 57.2 0.0 1.7e-13 50.6 0.0 3.7 3 1 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|20091946|ref|NP_618021.1| - 1.8e-15 57.0 0.1 1.1e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|20091946|ref|NP_618021.1| - 1.6e-10 40.3 36.9 0.00021 21.0 2.8 5.6 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20091946|ref|NP_618021.1| - 9.6e-10 38.9 32.1 0.00059 20.4 1.4 5.7 4 2 3 7 7 7 5 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|20091946|ref|NP_618021.1| - 3.5e-09 36.5 0.1 5.4e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|20091946|ref|NP_618021.1| - 5.1e-09 36.2 0.2 5.9e-06 26.1 0.1 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase Fer4_2 PF12797.7 gi|20091946|ref|NP_618021.1| - 9.8e-09 34.8 33.6 0.0024 17.8 4.0 5.0 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20091946|ref|NP_618021.1| - 6.5e-08 32.3 39.2 0.00026 20.9 3.5 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain NAD_binding_8 PF13450.6 gi|20091946|ref|NP_618021.1| - 2.6e-07 30.8 0.1 6.3e-07 29.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_16 PF13484.6 gi|20091946|ref|NP_618021.1| - 3e-07 31.3 22.1 0.067 14.1 0.7 5.1 5 0 0 5 5 4 3 4Fe-4S double cluster binding domain FAD_binding_2 PF00890.24 gi|20091946|ref|NP_618021.1| - 2e-06 27.2 3.0 6.9e-06 25.4 3.2 1.7 2 0 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.6 gi|20091946|ref|NP_618021.1| - 3.9e-06 27.3 22.6 0.0051 17.3 1.4 5.2 5 0 0 5 5 4 3 4Fe-4S dicluster domain GIDA PF01134.22 gi|20091946|ref|NP_618021.1| - 2.1e-05 23.8 0.3 3.7e-05 23.0 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_9 PF13187.6 gi|20091946|ref|NP_618021.1| - 5.5e-05 23.3 6.8 5.5e-05 23.3 6.8 4.3 3 2 3 6 6 4 3 4Fe-4S dicluster domain Thi4 PF01946.17 gi|20091946|ref|NP_618021.1| - 8.7e-05 21.9 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|20091946|ref|NP_618021.1| - 0.0001 22.8 0.5 0.028 14.9 0.2 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_21 PF14697.6 gi|20091946|ref|NP_618021.1| - 0.00023 21.2 39.1 0.0045 17.1 4.5 4.7 4 1 0 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20091946|ref|NP_618021.1| - 0.00079 19.8 1.6 0.00079 19.8 1.6 5.0 4 1 1 5 5 3 1 4Fe-4S dicluster domain HI0933_like PF03486.14 gi|20091946|ref|NP_618021.1| - 0.0011 17.8 1.8 0.0022 16.8 1.8 1.5 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|20091946|ref|NP_618021.1| - 0.0013 18.1 0.7 0.0023 17.2 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_10 PF13237.6 gi|20091946|ref|NP_618021.1| - 0.0019 18.2 46.4 0.0042 17.2 9.5 4.9 4 2 2 6 6 4 3 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|20091946|ref|NP_618021.1| - 0.0044 16.3 0.8 0.082 12.1 1.4 2.6 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|20091946|ref|NP_618021.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|20091946|ref|NP_618021.1| - 0.32 10.0 2.0 4.1 6.3 0.8 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein Fer4_22 PF17179.4 gi|20091946|ref|NP_618021.1| - 0.6 11.0 22.4 0.12 13.2 1.3 4.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20091946|ref|NP_618021.1| - 3.5 8.4 39.1 0.24 12.0 4.6 5.3 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20091946|ref|NP_618021.1| - 7.5 6.8 20.9 0.49 10.6 0.4 4.1 3 1 0 4 4 4 0 4Fe-4S dicluster domain SMC_ScpB PF04079.16 gi|20091947|ref|NP_618022.1| - 0.014 15.0 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB MRP-L20 PF12824.7 gi|20091947|ref|NP_618022.1| - 0.029 14.5 0.0 0.04 14.1 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 SMC_ScpB PF04079.16 gi|20091948|ref|NP_618023.1| - 0.003 17.2 0.1 0.0039 16.8 0.1 1.2 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB PadR PF03551.14 gi|20091948|ref|NP_618023.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family NosD PF05048.13 gi|20091951|ref|NP_618026.1| - 1.8e-42 145.3 13.2 1.8e-42 145.3 13.2 3.1 4 0 0 4 4 4 1 Periplasmic copper-binding protein (NosD) PKD PF00801.20 gi|20091951|ref|NP_618026.1| - 1.1e-34 118.1 37.8 1.4e-07 31.3 2.3 6.1 5 1 0 5 5 5 5 PKD domain PKD_3 PF16820.5 gi|20091951|ref|NP_618026.1| - 3.7e-09 36.2 19.0 0.1 12.4 0.5 5.6 5 0 0 5 5 5 5 PKD-like domain Dockerin_1 PF00404.18 gi|20091951|ref|NP_618026.1| - 0.0019 18.3 4.8 8 6.7 0.1 4.2 4 0 0 4 4 4 2 Dockerin type I domain LRR_5 PF13306.6 gi|20091951|ref|NP_618026.1| - 0.0055 16.7 1.7 0.012 15.6 1.7 1.5 1 0 0 1 1 1 1 BspA type Leucine rich repeat region (6 copies) ACTH_assoc PF16102.5 gi|20091951|ref|NP_618026.1| - 0.0067 17.1 6.3 60 4.7 0.0 6.2 6 0 0 6 6 6 0 ACTH-associated domain TTc_toxin_rep PF18807.1 gi|20091951|ref|NP_618026.1| - 0.11 12.4 2.7 21 5.0 0.0 3.9 5 0 0 5 5 5 0 Tripartite Tc toxins repeat Y_Y_Y PF07495.13 gi|20091951|ref|NP_618026.1| - 5 7.2 24.3 10 6.1 0.1 6.8 6 3 2 8 8 8 0 Y_Y_Y domain DUF308 PF03729.13 gi|20091952|ref|NP_618027.1| - 2e-22 79.3 45.5 2.4e-12 47.0 17.3 3.1 3 0 0 3 3 3 3 Short repeat of unknown function (DUF308) DUF1648 PF07853.11 gi|20091953|ref|NP_618028.1| - 6.2e-20 70.6 0.6 6.2e-20 70.6 0.6 3.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) SdpI PF13630.6 gi|20091953|ref|NP_618028.1| - 5.4e-19 68.1 11.3 7.6e-18 64.4 1.9 3.2 2 1 0 2 2 2 2 SdpI/YhfL protein family Ni_hydr_CYTB PF01292.20 gi|20091953|ref|NP_618028.1| - 0.0056 16.3 5.4 0.0094 15.6 2.3 2.1 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 Cytochrom_B_C PF00032.17 gi|20091953|ref|NP_618028.1| - 0.14 12.4 5.0 0.1 12.9 2.6 2.0 1 1 1 2 2 2 0 Cytochrome b(C-terminal)/b6/petD DUF5336 PF17270.2 gi|20091953|ref|NP_618028.1| - 0.2 11.3 2.9 9.4 5.8 0.0 2.8 1 1 2 3 3 3 0 Family of unknown function (DUF5336) DUF3671 PF12420.8 gi|20091953|ref|NP_618028.1| - 0.44 10.6 9.3 1.8 8.7 1.0 3.1 2 1 1 3 3 3 0 Protein of unknown function Bap31 PF05529.12 gi|20091953|ref|NP_618028.1| - 5.6 6.8 7.3 2.4 8.0 3.4 2.3 3 0 0 3 3 3 0 Bap31/Bap29 transmembrane region DUF996 PF06195.13 gi|20091953|ref|NP_618028.1| - 8 6.7 12.9 14 6.0 9.0 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF996) DUF2208 PF09973.9 gi|20091953|ref|NP_618028.1| - 9.4 5.8 13.2 6.6 6.3 0.2 3.0 2 1 1 3 3 3 0 Predicted membrane protein (DUF2208) FKBP_C PF00254.28 gi|20091954|ref|NP_618029.1| - 9.3e-31 106.0 0.7 1.2e-30 105.6 0.7 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase VPR PF00522.18 gi|20091954|ref|NP_618029.1| - 0.17 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 VPR/VPX protein FKBP_C PF00254.28 gi|20091955|ref|NP_618030.1| - 7.1e-30 103.2 0.5 1.1e-29 102.5 0.5 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP_C PF00254.28 gi|20091956|ref|NP_618031.1| - 1.3e-19 70.3 0.0 2e-19 69.7 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase tRNA_anti-codon PF01336.25 gi|20091957|ref|NP_618032.1| - 1e-05 25.4 0.1 1.6e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain NTP_transferase PF00483.23 gi|20091958|ref|NP_618033.1| - 3e-49 167.8 0.0 4.4e-49 167.3 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|20091958|ref|NP_618033.1| - 1.4e-19 69.0 26.2 3e-08 33.1 1.3 4.8 2 2 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20091958|ref|NP_618033.1| - 3.2e-09 36.4 26.6 0.0032 17.2 5.4 4.9 2 2 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|20091958|ref|NP_618033.1| - 7.7e-09 36.1 0.0 1.2e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|20091958|ref|NP_618033.1| - 0.0058 15.6 3.6 0.044 12.7 3.7 2.1 1 1 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|20091958|ref|NP_618033.1| - 2 6.4 9.3 0.41 8.7 4.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) LPG_synthase_TM PF03706.13 gi|20091960|ref|NP_618035.1| - 1.1e-47 163.0 23.6 1.4e-47 162.7 23.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region GATase1_like PF07090.11 gi|20091963|ref|NP_618038.1| - 4.6e-11 42.6 0.0 5.5e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 Putative glutamine amidotransferase VWA PF00092.28 gi|20091963|ref|NP_618038.1| - 2.4e-10 40.9 0.9 7.6e-06 26.3 0.1 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain Usp PF00582.26 gi|20091963|ref|NP_618038.1| - 0.00029 21.4 0.2 1.1 9.7 0.0 2.9 2 0 0 2 2 2 2 Universal stress protein family DUF4350 PF14258.6 gi|20091963|ref|NP_618038.1| - 0.00037 20.9 0.2 0.28 11.6 0.0 3.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|20091963|ref|NP_618038.1| - 0.005 16.4 1.3 0.0081 15.7 0.3 1.8 2 0 0 2 2 2 1 ABC-type uncharacterized transport system LBP_M PF17385.2 gi|20091963|ref|NP_618038.1| - 0.023 14.2 0.0 3.6 7.0 0.0 2.8 2 0 0 2 2 2 0 Lacto-N-biose phosphorylase central domain DUF4159 PF13709.6 gi|20091963|ref|NP_618038.1| - 0.045 13.2 0.0 0.77 9.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) BatA PF07584.11 gi|20091964|ref|NP_618039.1| - 2e-15 56.9 6.7 4e-15 55.9 6.7 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal DUF2194 PF09960.9 gi|20091964|ref|NP_618039.1| - 0.00071 18.1 0.1 0.0011 17.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) VWA_2 PF13519.6 gi|20091964|ref|NP_618039.1| - 0.0015 19.1 0.1 0.0051 17.4 0.1 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain ThuA PF06283.11 gi|20091964|ref|NP_618039.1| - 0.0052 17.0 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Trehalose utilisation ABC_transp_aux PF09822.9 gi|20091964|ref|NP_618039.1| - 0.009 15.5 0.0 0.022 14.2 0.0 1.6 1 1 0 1 1 1 1 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.10 gi|20091964|ref|NP_618039.1| - 0.048 13.1 0.2 0.12 11.9 0.2 1.5 1 1 0 1 1 1 0 Beta-galactosidase trimerisation domain DUF58 PF01882.18 gi|20091965|ref|NP_618040.1| - 1.7e-23 82.7 0.1 3.1e-23 81.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|20091965|ref|NP_618040.1| - 3e-07 31.0 0.1 6.7e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|20091965|ref|NP_618040.1| - 4.9e-06 26.1 0.1 9.3e-06 25.2 0.1 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|20091965|ref|NP_618040.1| - 0.025 14.8 0.1 0.042 14.1 0.1 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_3 PF07726.11 gi|20091966|ref|NP_618041.1| - 2.1e-63 212.0 0.1 3.4e-63 211.3 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|20091966|ref|NP_618041.1| - 2.6e-19 68.8 0.0 4.2e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|20091966|ref|NP_618041.1| - 4.7e-13 49.3 0.0 8.8e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20091966|ref|NP_618041.1| - 5.5e-07 30.1 0.0 9.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|20091966|ref|NP_618041.1| - 2.6e-05 23.5 0.0 4.8e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|20091966|ref|NP_618041.1| - 0.00015 21.6 0.1 0.0016 18.2 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|20091966|ref|NP_618041.1| - 0.0014 18.4 0.1 0.011 15.5 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|20091966|ref|NP_618041.1| - 0.037 14.1 0.0 0.089 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.6 gi|20091966|ref|NP_618041.1| - 0.056 13.8 0.0 2.8 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain PDT PF00800.18 gi|20091968|ref|NP_618043.1| - 2.8e-55 187.0 0.0 3.6e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|20091968|ref|NP_618043.1| - 9.7e-12 44.4 0.0 1.8e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 ACT domain TrmB PF01978.19 gi|20091969|ref|NP_618044.1| - 1.2e-23 82.7 0.6 2.9e-23 81.5 0.6 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PLDc_2 PF13091.6 gi|20091969|ref|NP_618044.1| - 0.0081 16.0 0.1 0.19 11.6 0.0 2.2 2 0 0 2 2 2 1 PLD-like domain Regulator_TrmB PF11495.8 gi|20091969|ref|NP_618044.1| - 0.0091 15.2 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TPR_19 PF14559.6 gi|20091969|ref|NP_618044.1| - 0.057 13.9 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat CMD PF02627.20 gi|20091970|ref|NP_618045.1| - 6.6e-18 64.5 0.1 8.8e-18 64.1 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|20091970|ref|NP_618045.1| - 0.0054 15.7 0.0 0.0061 15.5 0.0 1.0 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) SapB_1 PF05184.15 gi|20091970|ref|NP_618045.1| - 0.0076 16.2 0.2 0.019 15.0 0.2 1.7 1 0 0 1 1 1 1 Saposin-like type B, region 1 AAA_14 PF13173.6 gi|20091971|ref|NP_618046.1| - 1.2e-39 135.3 0.0 2.8e-39 134.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|20091971|ref|NP_618046.1| - 2.6e-16 59.9 0.0 4.8e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Mrr_cat PF04471.12 gi|20091971|ref|NP_618046.1| - 0.012 15.6 0.0 0.043 13.8 0.0 1.9 2 0 0 2 2 2 0 Restriction endonuclease AAA PF00004.29 gi|20091971|ref|NP_618046.1| - 0.019 15.4 0.0 0.11 13.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|20091971|ref|NP_618046.1| - 0.046 13.6 0.1 0.29 11.0 0.0 2.1 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|20091971|ref|NP_618046.1| - 0.055 13.9 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MobB PF03205.14 gi|20091971|ref|NP_618046.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF488 PF04343.13 gi|20091972|ref|NP_618047.1| - 4.1e-28 98.4 0.0 7.3e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF4065 PF13274.6 gi|20091972|ref|NP_618047.1| - 0.16 12.9 4.4 0.08 13.8 1.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4065) DUF4384 PF14326.6 gi|20091973|ref|NP_618048.1| - 0.15 12.2 0.0 0.65 10.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4384) HEPN_Apea PF18739.1 gi|20091974|ref|NP_618049.1| - 0.0038 17.6 1.4 0.0067 16.8 1.4 1.5 1 1 0 1 1 1 1 Apea-like HEPN Trehalose_recp PF06151.13 gi|20091974|ref|NP_618049.1| - 0.0055 15.4 0.1 0.0071 15.0 0.1 1.1 1 0 0 1 1 1 1 Trehalose receptor DUF86 PF01934.17 gi|20091974|ref|NP_618049.1| - 0.031 14.1 0.1 0.042 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF86 Orthopox_A43R PF06517.11 gi|20091974|ref|NP_618049.1| - 0.038 13.8 0.3 0.046 13.5 0.3 1.1 1 0 0 1 1 1 0 Orthopoxvirus A43R protein rve PF00665.26 gi|20091976|ref|NP_618051.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20091976|ref|NP_618051.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20091976|ref|NP_618051.1| - 7.5e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20091976|ref|NP_618051.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20091976|ref|NP_618051.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20091976|ref|NP_618051.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20091976|ref|NP_618051.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20091976|ref|NP_618051.1| - 0.11 12.2 0.5 0.5 10.1 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment Methylase_S PF01420.19 gi|20091977|ref|NP_618052.1| - 2.8e-05 24.4 0.0 2.9e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Fer4_21 PF14697.6 gi|20091978|ref|NP_618053.1| - 1.5e-09 37.8 7.4 1.5e-09 37.8 7.4 2.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20091978|ref|NP_618053.1| - 3.2e-08 33.3 8.8 4e-06 26.7 4.0 3.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20091978|ref|NP_618053.1| - 4.9e-08 32.5 11.4 1e-05 25.1 5.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20091978|ref|NP_618053.1| - 1.3e-07 32.1 11.7 0.00064 20.3 0.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20091978|ref|NP_618053.1| - 1.4e-06 29.1 14.0 0.00099 20.0 3.9 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20091978|ref|NP_618053.1| - 1.7e-05 24.9 7.1 1.7e-05 24.9 7.1 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20091978|ref|NP_618053.1| - 1.8e-05 24.8 15.6 2.6e-05 24.3 8.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20091978|ref|NP_618053.1| - 1.9e-05 24.5 15.4 0.00013 21.8 2.4 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20091978|ref|NP_618053.1| - 0.00022 21.9 10.8 0.0018 19.0 1.4 2.8 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|20091978|ref|NP_618053.1| - 0.001 19.5 8.6 0.12 12.9 0.5 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20091978|ref|NP_618053.1| - 0.066 14.1 1.8 0.066 14.1 1.8 3.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|20091978|ref|NP_618053.1| - 0.08 13.0 4.4 11 6.2 0.4 3.2 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.7 gi|20091978|ref|NP_618053.1| - 0.1 13.1 4.2 0.1 13.1 4.2 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Zn_ribbon_SprT PF17283.2 gi|20091978|ref|NP_618053.1| - 2.4 8.2 8.5 25 4.9 0.1 3.3 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Fer4_8 PF13183.6 gi|20091978|ref|NP_618053.1| - 2.9 8.4 17.8 1.1e+03 0.2 17.8 3.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF2973 PF11189.8 gi|20091979|ref|NP_618054.1| - 0.031 14.4 0.6 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) CGGC PF08821.11 gi|20091980|ref|NP_618055.1| - 9.2e-36 122.3 0.8 1e-35 122.1 0.8 1.0 1 0 0 1 1 1 1 CGGC domain Cupin_2 PF07883.11 gi|20091981|ref|NP_618056.1| - 9.2e-14 50.9 0.2 1.3e-13 50.5 0.2 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|20091981|ref|NP_618056.1| - 0.0092 15.9 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF4585 PF15232.6 gi|20091981|ref|NP_618056.1| - 0.02 15.0 0.3 0.074 13.1 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4585) AraC_binding PF02311.19 gi|20091981|ref|NP_618056.1| - 0.082 12.8 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|20091981|ref|NP_618056.1| - 0.086 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain NIR_SIR PF01077.22 gi|20091983|ref|NP_618058.1| - 7.1e-30 103.6 0.0 1.2e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|20091983|ref|NP_618058.1| - 6.4e-15 54.8 0.0 1.2e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain HxlR PF01638.17 gi|20091984|ref|NP_618059.1| - 6.4e-23 80.4 0.4 8.1e-23 80.1 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|20091984|ref|NP_618059.1| - 0.00019 21.3 0.1 0.0005 20.0 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|20091984|ref|NP_618059.1| - 0.0029 17.8 0.1 0.0051 17.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|20091984|ref|NP_618059.1| - 0.01 15.8 0.1 0.026 14.5 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|20091984|ref|NP_618059.1| - 0.025 14.6 0.0 0.03 14.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF4423 PF14394.6 gi|20091984|ref|NP_618059.1| - 0.039 13.6 0.0 0.05 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Cortex-I_coil PF09304.10 gi|20091984|ref|NP_618059.1| - 0.054 13.7 0.4 0.081 13.1 0.4 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil Rrf2 PF02082.20 gi|20091984|ref|NP_618059.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator NIR_SIR PF01077.22 gi|20091985|ref|NP_618060.1| - 4e-28 97.9 0.0 3.2e-27 95.0 0.0 1.9 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|20091985|ref|NP_618060.1| - 1.4e-16 60.0 0.0 3.2e-16 58.9 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Succ_CoA_lig PF13607.6 gi|20091986|ref|NP_618061.1| - 9.4e-50 168.0 0.7 4.6e-49 165.8 0.5 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|20091986|ref|NP_618061.1| - 3.9e-21 75.7 0.0 2.6e-20 73.0 0.0 2.4 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|20091986|ref|NP_618061.1| - 1e-12 48.5 0.0 4.7e-11 43.2 0.0 3.3 4 0 0 4 4 4 1 CoA binding domain DUF2095 PF09868.9 gi|20091986|ref|NP_618061.1| - 0.06 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) ELFV_dehydrog PF00208.21 gi|20091987|ref|NP_618062.1| - 8.8e-58 195.9 0.0 1.1e-57 195.6 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|20091987|ref|NP_618062.1| - 8.3e-20 71.0 0.0 1.4e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Bac_GDH PF05088.12 gi|20091987|ref|NP_618062.1| - 0.0073 13.9 0.0 0.0099 13.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|20091987|ref|NP_618062.1| - 0.01 15.2 0.1 0.023 14.1 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KH_7 PF17214.3 gi|20091987|ref|NP_618062.1| - 0.021 14.8 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 KH domain AdoHcyase_NAD PF00670.21 gi|20091987|ref|NP_618062.1| - 0.047 13.7 0.1 0.095 12.8 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Methyltransf_25 PF13649.6 gi|20091988|ref|NP_618063.1| - 1.3e-15 57.9 0.0 3.8e-15 56.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20091988|ref|NP_618063.1| - 2.8e-15 56.8 0.0 5.3e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20091988|ref|NP_618063.1| - 6.1e-14 52.4 0.0 9.1e-13 48.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20091988|ref|NP_618063.1| - 5.9e-13 48.9 0.0 7.7e-13 48.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20091988|ref|NP_618063.1| - 7.7e-13 48.6 0.0 1.3e-12 47.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20091988|ref|NP_618063.1| - 1.9e-12 47.1 0.0 3.5e-12 46.2 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|20091988|ref|NP_618063.1| - 2.5e-07 30.3 0.0 3.4e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|20091988|ref|NP_618063.1| - 5.4e-06 26.3 0.0 7.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|20091988|ref|NP_618063.1| - 8.2e-05 22.1 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|20091988|ref|NP_618063.1| - 0.00011 21.9 0.0 0.00022 20.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|20091988|ref|NP_618063.1| - 0.00042 20.0 0.0 0.00059 19.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|20091988|ref|NP_618063.1| - 0.0017 18.3 0.1 0.0034 17.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|20091988|ref|NP_618063.1| - 0.0019 17.7 0.0 0.0047 16.4 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase DREV PF05219.12 gi|20091988|ref|NP_618063.1| - 0.0037 16.4 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.12 gi|20091988|ref|NP_618063.1| - 0.0085 15.6 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase TPMT PF05724.11 gi|20091988|ref|NP_618063.1| - 0.027 14.1 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|20091988|ref|NP_618063.1| - 0.032 13.8 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|20091988|ref|NP_618063.1| - 0.032 13.6 0.0 0.044 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|20091988|ref|NP_618063.1| - 0.049 12.6 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.6 gi|20091988|ref|NP_618063.1| - 0.088 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.27 gi|20091989|ref|NP_618064.1| - 3.9e-30 105.2 0.0 8.1e-30 104.1 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|20091989|ref|NP_618064.1| - 3e-07 30.6 0.4 0.022 14.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20091989|ref|NP_618064.1| - 6.8e-07 28.9 0.0 0.0021 17.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20091989|ref|NP_618064.1| - 1.1e-05 25.9 0.0 1.9e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20091989|ref|NP_618064.1| - 0.00043 20.0 0.0 0.00094 18.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20091989|ref|NP_618064.1| - 0.00084 19.3 0.2 0.0023 17.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_13 PF13166.6 gi|20091989|ref|NP_618064.1| - 0.0024 16.6 0.0 0.08 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20091989|ref|NP_618064.1| - 0.017 15.4 0.1 0.046 14.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|20091989|ref|NP_618064.1| - 0.018 15.5 0.0 0.036 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|20091989|ref|NP_618064.1| - 0.02 15.4 0.0 0.17 12.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|20091989|ref|NP_618064.1| - 0.029 14.3 0.0 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|20091989|ref|NP_618064.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|20091989|ref|NP_618064.1| - 0.054 13.7 0.0 0.07 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20091989|ref|NP_618064.1| - 0.075 12.7 0.0 0.48 10.1 0.0 2.2 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|20091989|ref|NP_618064.1| - 0.081 13.0 0.3 0.25 11.4 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|20091989|ref|NP_618064.1| - 0.1 12.4 0.1 0.67 9.7 0.0 2.2 3 0 0 3 3 3 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|20091989|ref|NP_618064.1| - 0.12 12.8 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase 5_3_exonuc_N PF02739.16 gi|20091989|ref|NP_618064.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain AAA_28 PF13521.6 gi|20091989|ref|NP_618064.1| - 0.16 12.2 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.9 gi|20091990|ref|NP_618065.1| - 3.8e-10 39.9 0.4 0.0013 18.9 0.0 4.5 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|20091990|ref|NP_618065.1| - 5.6e-08 33.0 1.2 0.054 13.8 0.0 3.8 3 1 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|20091990|ref|NP_618065.1| - 7.6e-07 29.3 8.1 0.076 13.3 0.2 3.8 2 1 1 3 3 3 3 CARDB MG4 PF17789.1 gi|20091990|ref|NP_618065.1| - 0.0053 16.9 0.6 0.059 13.5 0.1 2.7 3 0 0 3 3 3 1 Macroglobulin domain MG4 Wzt_C PF14524.6 gi|20091990|ref|NP_618065.1| - 0.0064 16.5 1.9 0.64 10.0 0.1 3.8 2 1 1 4 4 4 1 Wzt C-terminal domain MG2 PF01835.19 gi|20091990|ref|NP_618065.1| - 0.016 15.7 0.1 1 9.9 0.0 3.4 3 2 0 4 4 4 0 MG2 domain DUF2393 PF09624.10 gi|20091990|ref|NP_618065.1| - 0.033 14.2 0.0 0.51 10.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) He_PIG PF05345.12 gi|20091990|ref|NP_618065.1| - 0.05 13.8 1.8 19 5.5 0.1 3.8 4 0 0 4 4 4 0 Putative Ig domain Ig_GlcNase PF18368.1 gi|20091990|ref|NP_618065.1| - 0.35 11.1 1.5 28 5.0 0.0 3.8 4 2 1 5 5 5 0 Exo-beta-D-glucosaminidase Ig-fold domain NEAT PF05031.12 gi|20091990|ref|NP_618065.1| - 1.8 9.2 8.0 12 6.6 5.4 2.8 2 1 0 2 2 2 0 Iron Transport-associated domain MacB_PCD PF12704.7 gi|20091991|ref|NP_618066.1| - 9.8e-30 104.4 6.0 9.8e-30 104.4 6.0 2.1 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20091991|ref|NP_618066.1| - 9.2e-14 51.7 4.7 9.2e-14 51.7 4.7 3.2 3 0 0 3 3 3 1 FtsX-like permease family DUF4134 PF13572.6 gi|20091991|ref|NP_618066.1| - 0.65 10.3 9.0 0.29 11.4 0.9 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4134) Hydrolase_4 PF12146.8 gi|20091992|ref|NP_618067.1| - 0.0021 17.4 0.1 0.0048 16.2 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|20091992|ref|NP_618067.1| - 0.043 14.4 0.0 0.055 14.1 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family Polyketide_cyc2 PF10604.9 gi|20091993|ref|NP_618068.1| - 1.1e-09 38.7 0.0 1.3e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ATP-grasp_4 PF13535.6 gi|20091994|ref|NP_618069.1| - 1.3e-53 180.9 0.1 5e-39 133.4 0.1 2.3 2 0 0 2 2 2 2 ATP-grasp domain MetRS-N PF09635.10 gi|20091994|ref|NP_618069.1| - 0.13 12.8 0.6 0.48 11.0 0.1 2.1 1 1 1 2 2 2 0 MetRS-N binding domain Fur_reg_FbpB PF13040.6 gi|20091995|ref|NP_618070.1| - 0.31 10.6 3.5 1.5 8.4 0.4 2.5 2 0 0 2 2 2 0 Fur-regulated basic protein B Rhodanese PF00581.20 gi|20091996|ref|NP_618071.1| - 1.3e-16 61.0 0.0 1.7e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain K_trans PF02705.16 gi|20091997|ref|NP_618072.1| - 4.7e-172 573.2 34.1 5.5e-172 573.0 34.1 1.0 1 0 0 1 1 1 1 K+ potassium transporter MatE PF01554.18 gi|20091999|ref|NP_618074.1| - 1e-48 165.1 43.3 1.8e-26 92.7 11.3 3.6 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|20091999|ref|NP_618074.1| - 7.7e-11 42.2 10.9 7.7e-11 42.2 10.9 4.5 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain SQHop_cyclase_C PF13243.6 gi|20092000|ref|NP_618075.1| - 9e-15 54.6 4.1 5.4e-11 42.2 2.5 3.5 1 1 1 2 2 2 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|20092000|ref|NP_618075.1| - 2.7e-07 30.2 5.4 1.7 8.5 0.0 5.4 5 0 0 5 5 5 3 Prenyltransferase and squalene oxidase repeat TED_complement PF07678.14 gi|20092000|ref|NP_618075.1| - 2.6e-06 26.7 0.9 0.32 10.0 0.3 3.7 3 1 0 3 3 3 2 A-macroglobulin TED domain SQHop_cyclase_N PF13249.6 gi|20092000|ref|NP_618075.1| - 7.7e-05 21.9 1.0 0.29 10.2 0.0 3.4 2 1 2 4 4 4 4 Squalene-hopene cyclase N-terminal domain Pec_lyase PF09492.10 gi|20092000|ref|NP_618075.1| - 0.0053 16.1 2.3 7.9 5.7 0.0 3.9 2 1 2 4 4 4 2 Pectic acid lyase SPASM PF13186.6 gi|20092002|ref|NP_618077.1| - 1.1e-10 41.8 1.3 2.6e-10 40.7 0.5 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|20092002|ref|NP_618077.1| - 3.2e-08 34.1 0.2 6.8e-08 33.1 0.2 1.6 1 0 0 1 1 1 1 Radical SAM superfamily AbfS_sensor PF18225.1 gi|20092002|ref|NP_618077.1| - 0.077 12.9 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Sensor histidine kinase (AbfS) sensor domain DUF240 PF03086.14 gi|20092003|ref|NP_618078.1| - 0.014 15.3 0.2 0.017 15.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF240) Cupin_2 PF07883.11 gi|20092004|ref|NP_618079.1| - 9e-12 44.5 0.0 2e-11 43.4 0.0 1.6 2 0 0 2 2 2 1 Cupin domain sCache_2 PF17200.4 gi|20092004|ref|NP_618079.1| - 7.9e-10 38.8 0.2 1.4e-09 38.0 0.2 1.4 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|20092004|ref|NP_618079.1| - 8.7e-10 38.2 0.3 1.7e-09 37.3 0.3 1.6 1 1 0 1 1 1 1 Cache domain AraC_binding PF02311.19 gi|20092004|ref|NP_618079.1| - 0.0071 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.16 gi|20092004|ref|NP_618079.1| - 0.054 13.1 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 Auxin binding protein PG_isomerase_N PF18353.1 gi|20092004|ref|NP_618079.1| - 0.11 12.9 0.0 0.27 11.7 0.0 1.6 2 0 0 2 2 2 0 Phosphoglucose isomerase N-terminal domain MarR PF01047.22 gi|20092006|ref|NP_618081.1| - 1.1e-09 38.1 0.0 2e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20092006|ref|NP_618081.1| - 1.9e-08 34.7 0.1 7.5e-08 32.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|20092006|ref|NP_618081.1| - 2.4e-05 24.4 0.0 7e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|20092006|ref|NP_618081.1| - 4e-05 23.4 0.0 6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|20092006|ref|NP_618081.1| - 0.0059 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.14 gi|20092006|ref|NP_618081.1| - 0.017 15.0 0.0 0.047 13.7 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|20092006|ref|NP_618081.1| - 0.024 14.8 0.0 0.094 12.9 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF4364 PF14277.6 gi|20092006|ref|NP_618081.1| - 0.027 14.2 0.2 0.06 13.1 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|20092006|ref|NP_618081.1| - 0.066 13.1 0.0 0.21 11.5 0.0 1.8 1 1 1 2 2 2 0 HxlR-like helix-turn-helix Penicillinase_R PF03965.16 gi|20092006|ref|NP_618081.1| - 0.085 13.2 0.1 0.48 10.8 0.0 2.2 2 1 0 2 2 2 0 Penicillinase repressor DUF5343 PF17278.2 gi|20092006|ref|NP_618081.1| - 0.086 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5343) MatE PF01554.18 gi|20092007|ref|NP_618082.1| - 6.7e-58 194.9 35.4 6e-32 110.5 14.1 3.3 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|20092007|ref|NP_618082.1| - 2.3e-10 40.7 15.7 2.3e-10 40.7 15.7 4.3 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF1177 PF06675.11 gi|20092007|ref|NP_618082.1| - 0.081 11.7 0.4 0.13 11.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1177) UPF0047 PF01894.17 gi|20092008|ref|NP_618083.1| - 7.6e-41 138.9 0.0 8.8e-41 138.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 GATase_7 PF13537.6 gi|20092009|ref|NP_618084.1| - 2.5e-19 69.4 0.0 4e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|20092009|ref|NP_618084.1| - 1.6e-17 64.0 0.0 3.3e-17 62.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|20092009|ref|NP_618084.1| - 8.1e-08 31.5 0.0 1.5e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|20092009|ref|NP_618084.1| - 2.9e-06 26.9 0.2 5.3e-06 26.0 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Ribosomal_L37e PF01907.19 gi|20092010|ref|NP_618085.1| - 1.4e-21 76.4 16.4 1.5e-21 76.3 16.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zn-ribbon_14 PF16503.5 gi|20092010|ref|NP_618085.1| - 0.5 9.9 0.3 0.5 9.9 0.3 2.5 3 0 0 3 3 3 0 Zinc-ribbon YhfH PF14149.6 gi|20092010|ref|NP_618085.1| - 0.52 10.3 5.5 0.83 9.7 0.4 2.3 1 1 1 2 2 2 0 YhfH-like protein LSM PF01423.22 gi|20092011|ref|NP_618086.1| - 3.7e-21 74.6 0.1 4e-21 74.5 0.1 1.0 1 0 0 1 1 1 1 LSM domain Phos_pyr_kin PF08543.12 gi|20092013|ref|NP_618088.1| - 2.6e-79 266.1 2.5 3.8e-79 265.5 2.5 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|20092013|ref|NP_618088.1| - 5.6e-61 205.0 0.0 9.3e-61 204.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|20092013|ref|NP_618088.1| - 4.3e-11 42.7 1.0 6.9e-11 42.0 1.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|20092013|ref|NP_618088.1| - 0.00018 21.0 1.2 0.00032 20.2 1.2 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Lactamase_B PF00753.27 gi|20092013|ref|NP_618088.1| - 0.044 13.8 0.0 0.098 12.7 0.0 1.6 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily PALP PF00291.25 gi|20092014|ref|NP_618089.1| - 3.2e-43 148.2 0.0 3.8e-43 148.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1699 PF08004.11 gi|20092015|ref|NP_618090.1| - 1.5e-61 205.8 1.3 1.7e-61 205.6 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.11 gi|20092016|ref|NP_618091.1| - 4e-62 207.7 1.6 4.5e-62 207.5 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Histidinol_dh PF00815.20 gi|20092017|ref|NP_618092.1| - 1.1e-168 561.6 6.2 1.3e-168 561.3 6.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DEAD PF00270.29 gi|20092019|ref|NP_618094.1| - 6.6e-26 91.1 0.0 6.8e-25 87.8 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|20092019|ref|NP_618094.1| - 8.5e-12 45.5 0.1 1.6e-10 41.5 0.1 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|20092019|ref|NP_618094.1| - 1e-08 35.4 0.0 2.5e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|20092019|ref|NP_618094.1| - 2.5e-07 31.0 0.0 5.2e-06 26.8 0.0 2.8 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|20092019|ref|NP_618094.1| - 0.0024 17.7 0.0 0.014 15.2 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|20092019|ref|NP_618094.1| - 0.0092 16.1 0.1 0.042 14.0 0.1 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|20092019|ref|NP_618094.1| - 0.021 14.7 0.1 8.9 6.4 0.0 3.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|20092019|ref|NP_618094.1| - 0.072 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus Sec63 PF02889.16 gi|20092019|ref|NP_618094.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Sec63 Brl domain ABC_tran PF00005.27 gi|20092020|ref|NP_618095.1| - 1.3e-38 132.6 0.1 1.3e-19 71.1 0.1 3.2 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|20092020|ref|NP_618095.1| - 5e-16 58.8 7.6 6.2e-06 25.8 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|20092020|ref|NP_618095.1| - 1.3e-11 44.0 4.3 2.6e-11 43.1 4.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|20092020|ref|NP_618095.1| - 1.6e-09 38.1 3.0 0.055 13.3 0.2 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|20092020|ref|NP_618095.1| - 7e-08 32.0 4.8 7e-08 32.0 4.8 2.5 3 0 0 3 3 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|20092020|ref|NP_618095.1| - 3.5e-06 27.1 0.1 0.085 12.8 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_16 PF13191.6 gi|20092020|ref|NP_618095.1| - 5e-06 27.0 0.2 0.0042 17.5 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|20092020|ref|NP_618095.1| - 2.3e-05 24.7 0.1 0.01 16.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain Fer4_6 PF12837.7 gi|20092020|ref|NP_618095.1| - 4e-05 23.5 13.8 6e-05 23.0 3.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.6 gi|20092020|ref|NP_618095.1| - 0.0001 22.2 1.5 0.92 9.1 0.0 3.2 3 0 0 3 3 3 1 AAA ATPase domain AAA_24 PF13479.6 gi|20092020|ref|NP_618095.1| - 0.00017 21.3 0.1 0.34 10.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4_21 PF14697.6 gi|20092020|ref|NP_618095.1| - 0.00021 21.3 7.8 0.00036 20.6 7.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|20092020|ref|NP_618095.1| - 0.00025 21.4 0.0 0.46 10.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Fer4_9 PF13187.6 gi|20092020|ref|NP_618095.1| - 0.00069 19.7 8.3 0.0013 18.9 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|20092020|ref|NP_618095.1| - 0.00091 19.2 2.0 0.14 12.1 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase Fer4_2 PF12797.7 gi|20092020|ref|NP_618095.1| - 0.00098 19.1 1.5 0.00098 19.1 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|20092020|ref|NP_618095.1| - 0.001 18.8 3.2 0.86 9.4 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20092020|ref|NP_618095.1| - 0.0011 19.5 5.4 0.58 10.6 0.7 2.5 2 1 0 2 2 2 2 AAA domain Fer4_7 PF12838.7 gi|20092020|ref|NP_618095.1| - 0.0016 19.0 8.7 0.0039 17.8 8.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.29 gi|20092020|ref|NP_618095.1| - 0.0018 18.7 0.1 0.37 11.2 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|20092020|ref|NP_618095.1| - 0.0027 17.6 0.1 0.19 11.6 0.0 2.3 2 0 0 2 2 2 1 NACHT domain Fer4_10 PF13237.6 gi|20092020|ref|NP_618095.1| - 0.0029 17.7 11.5 0.0071 16.4 1.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain DUF87 PF01935.17 gi|20092020|ref|NP_618095.1| - 0.0045 17.1 0.8 1.7 8.7 0.0 3.1 3 0 0 3 3 3 1 Helicase HerA, central domain SbcCD_C PF13558.6 gi|20092020|ref|NP_618095.1| - 0.022 15.0 0.0 6.4 7.1 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|20092020|ref|NP_618095.1| - 0.028 14.5 2.8 3 7.9 0.1 3.6 3 1 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|20092020|ref|NP_618095.1| - 0.064 13.8 3.7 82 3.7 0.1 4.1 4 0 0 4 4 4 0 AAA domain AAA_33 PF13671.6 gi|20092020|ref|NP_618095.1| - 0.1 12.8 2.0 1.5 8.9 0.0 3.0 4 0 0 4 4 3 0 AAA domain AAA_5 PF07728.14 gi|20092020|ref|NP_618095.1| - 0.11 12.5 1.2 17 5.4 0.0 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|20092020|ref|NP_618095.1| - 0.12 12.0 3.5 1.4 8.5 0.0 3.4 4 0 0 4 4 4 0 AAA domain NTPase_1 PF03266.15 gi|20092020|ref|NP_618095.1| - 0.12 12.2 2.6 3.8 7.4 0.0 3.2 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|20092020|ref|NP_618095.1| - 0.15 12.1 2.3 1.6 8.8 0.2 2.8 2 2 0 2 2 2 0 50S ribosome-binding GTPase Fer4_4 PF12800.7 gi|20092020|ref|NP_618095.1| - 0.32 11.6 12.9 0.22 12.1 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain MeaB PF03308.16 gi|20092020|ref|NP_618095.1| - 0.41 9.6 2.9 3.3 6.6 0.2 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|20092020|ref|NP_618095.1| - 0.71 9.6 2.0 11 5.7 0.2 3.0 2 1 0 2 2 2 0 AAA domain Fer4_8 PF13183.6 gi|20092020|ref|NP_618095.1| - 0.84 10.1 5.4 0.35 11.3 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Lactamase_B_2 PF12706.7 gi|20092022|ref|NP_618097.1| - 6.9e-07 29.0 0.4 8.9e-06 25.3 0.1 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20092022|ref|NP_618097.1| - 0.0026 17.7 0.1 0.0098 15.8 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20092022|ref|NP_618097.1| - 0.0055 16.7 3.0 0.087 12.8 3.0 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HhH-GPD PF00730.25 gi|20092023|ref|NP_618098.1| - 1.5e-06 28.6 0.0 2.7e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Ribosomal_S6 PF01250.17 gi|20092023|ref|NP_618098.1| - 0.13 12.5 0.1 0.39 11.0 0.1 1.9 1 1 0 1 1 1 0 Ribosomal protein S6 Nitroreductase PF00881.24 gi|20092024|ref|NP_618099.1| - 2.2e-21 76.6 0.0 2.8e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|20092024|ref|NP_618099.1| - 0.035 13.7 0.0 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 Putative TM nitroreductase DUF1638 PF07796.11 gi|20092025|ref|NP_618100.1| - 5e-10 39.7 0.0 6.4e-10 39.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) ARD PF03079.14 gi|20092025|ref|NP_618100.1| - 0.042 14.0 0.0 0.046 13.9 0.0 1.1 1 0 0 1 1 1 0 ARD/ARD' family MULE PF10551.9 gi|20092026|ref|NP_618101.1| - 6e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain CxC4 PF18717.1 gi|20092026|ref|NP_618101.1| - 0.0064 16.3 2.7 0.011 15.6 1.6 2.0 1 1 0 1 1 1 1 CxC4 like cysteine cluster associated with KDZ transposases CxC3 PF18804.1 gi|20092026|ref|NP_618101.1| - 0.011 15.6 0.4 0.03 14.2 0.4 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases ADK_lid PF05191.14 gi|20092026|ref|NP_618101.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20092026|ref|NP_618101.1| - 0.023 14.7 0.2 0.063 13.3 0.1 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF659 PF04937.15 gi|20092026|ref|NP_618101.1| - 0.025 14.5 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) zf-MIZ PF02891.20 gi|20092026|ref|NP_618101.1| - 0.026 14.3 3.7 0.076 12.8 3.7 1.8 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger Transposase_mut PF00872.18 gi|20092026|ref|NP_618101.1| - 0.067 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Transposase, Mutator family CxC5 PF18718.1 gi|20092026|ref|NP_618101.1| - 0.18 11.9 4.6 0.38 10.8 4.6 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20092026|ref|NP_618101.1| - 0.55 10.3 4.2 76 3.4 0.0 3.2 2 1 0 2 2 2 0 Transposase zinc-binding domain Zn_ribbon_recom PF13408.6 gi|20092026|ref|NP_618101.1| - 1 9.9 6.2 1.9 9.0 4.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20092026|ref|NP_618101.1| - 3.4 7.6 8.0 1.2 9.1 4.4 2.1 2 1 0 2 2 2 0 PHD-finger DUF1699 PF08004.11 gi|20092027|ref|NP_618102.1| - 1.5e-61 205.8 1.2 1.7e-61 205.7 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.14 gi|20092027|ref|NP_618102.1| - 0.034 14.4 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PAM2 PF07145.15 gi|20092027|ref|NP_618102.1| - 0.093 12.5 0.3 12 5.8 0.1 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region DUF4394 PF14339.6 gi|20092027|ref|NP_618102.1| - 0.14 11.5 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) Thioredoxin PF00085.20 gi|20092028|ref|NP_618103.1| - 3.5e-24 84.8 0.0 3.9e-24 84.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|20092028|ref|NP_618103.1| - 4.9e-09 36.6 0.1 2.6e-08 34.3 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|20092028|ref|NP_618103.1| - 5.8e-09 36.2 0.0 6.9e-06 26.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Glutaredoxin PF00462.24 gi|20092028|ref|NP_618103.1| - 4.2e-07 30.1 0.0 6.6e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin TraF PF13728.6 gi|20092028|ref|NP_618103.1| - 7e-07 29.3 0.0 8.6e-07 29.0 0.0 1.0 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|20092028|ref|NP_618103.1| - 7.5e-07 29.0 0.0 8.9e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|20092028|ref|NP_618103.1| - 4.2e-06 26.7 0.0 4.9e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain KaiB PF07689.12 gi|20092028|ref|NP_618103.1| - 7e-06 25.7 0.0 8.2e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Redoxin PF08534.10 gi|20092028|ref|NP_618103.1| - 7.8e-06 25.7 0.1 0.0046 16.7 0.0 2.0 1 1 1 2 2 2 2 Redoxin Thioredoxin_7 PF13899.6 gi|20092028|ref|NP_618103.1| - 6.8e-05 23.0 0.0 0.00011 22.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like DUF836 PF05768.14 gi|20092028|ref|NP_618103.1| - 0.00014 22.2 0.0 0.00016 22.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) HyaE PF07449.11 gi|20092028|ref|NP_618103.1| - 0.00049 20.0 0.0 0.00059 19.8 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE ABC_transp_aux PF09822.9 gi|20092028|ref|NP_618103.1| - 0.001 18.6 0.0 0.0012 18.3 0.0 1.0 1 0 0 1 1 1 1 ABC-type uncharacterized transport system AhpC-TSA PF00578.21 gi|20092028|ref|NP_618103.1| - 0.0031 17.4 0.1 0.22 11.4 0.1 2.0 1 1 1 2 2 2 1 AhpC/TSA family DSBA PF01323.20 gi|20092028|ref|NP_618103.1| - 0.004 16.9 0.1 0.18 11.6 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_6 PF13848.6 gi|20092028|ref|NP_618103.1| - 0.0048 16.8 0.0 0.0048 16.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|20092028|ref|NP_618103.1| - 0.0079 15.6 0.0 0.0083 15.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_5 PF13743.6 gi|20092028|ref|NP_618103.1| - 0.014 15.1 0.1 4.8 6.8 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_4 PF13462.6 gi|20092028|ref|NP_618103.1| - 0.044 14.0 0.1 0.57 10.3 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin T4_deiodinase PF00837.17 gi|20092028|ref|NP_618103.1| - 0.16 11.3 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Iodothyronine deiodinase OrfB_Zn_ribbon PF07282.11 gi|20092029|ref|NP_618104.1| - 0.0033 17.3 0.2 0.0059 16.5 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Peptidase_M43 PF05572.13 gi|20092030|ref|NP_618105.1| - 4e-16 59.3 0.0 6.4e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.6 gi|20092030|ref|NP_618105.1| - 0.015 15.9 0.0 0.028 14.9 0.0 1.7 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Myb_DNA-bind_4 PF13837.6 gi|20092030|ref|NP_618105.1| - 0.05 14.0 0.0 0.19 12.1 0.0 2.0 1 1 0 1 1 1 0 Myb/SANT-like DNA-binding domain Peptidase_M28 PF04389.17 gi|20092032|ref|NP_618107.1| - 7e-42 143.4 0.1 9.1e-42 143.0 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|20092032|ref|NP_618107.1| - 4.7e-08 33.0 0.3 1.3e-07 31.5 0.3 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Nicastrin PF05450.15 gi|20092032|ref|NP_618107.1| - 0.0028 17.1 0.0 0.0058 16.1 0.0 1.5 1 0 0 1 1 1 1 Nicastrin Zeta_toxin PF06414.12 gi|20092032|ref|NP_618107.1| - 0.0088 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Peptidase_C1 PF00112.23 gi|20092033|ref|NP_618108.1| - 2.5e-12 47.4 0.1 2.7e-11 44.0 0.1 2.0 1 1 0 1 1 1 1 Papain family cysteine protease Inhibitor_I42 PF09394.10 gi|20092034|ref|NP_618109.1| - 1.3e-17 64.0 0.1 2e-17 63.4 0.1 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Exo_endo_phos PF03372.23 gi|20092035|ref|NP_618110.1| - 2.7e-08 33.6 0.0 8.6e-08 32.0 0.0 1.7 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|20092035|ref|NP_618110.1| - 0.074 12.9 0.1 0.29 11.0 0.1 2.1 1 1 0 1 1 1 0 Endonuclease-reverse transcriptase DDE_Tnp_IS1 PF03400.13 gi|20092037|ref|NP_618112.1| - 8.4e-14 52.0 0.3 9.4e-14 51.9 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20092038|ref|NP_618113.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20092038|ref|NP_618113.1| - 3.3e-06 26.9 0.0 4.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20092038|ref|NP_618113.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20092038|ref|NP_618113.1| - 0.0013 18.5 0.1 0.0069 16.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20092038|ref|NP_618113.1| - 0.0065 16.2 8.6 0.01 15.5 8.6 1.3 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20092038|ref|NP_618113.1| - 0.0076 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20092038|ref|NP_618113.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20092038|ref|NP_618113.1| - 0.022 13.8 0.1 0.032 13.2 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20092038|ref|NP_618113.1| - 0.042 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20092038|ref|NP_618113.1| - 0.056 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092038|ref|NP_618113.1| - 0.067 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20092038|ref|NP_618113.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20092038|ref|NP_618113.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin DUF4064 PF13273.6 gi|20092044|ref|NP_618119.1| - 0.00013 22.2 1.6 0.00015 22.0 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4064) PKD PF00801.20 gi|20092045|ref|NP_618120.1| - 9.2e-24 83.1 46.8 7.3e-11 41.8 4.1 5.2 5 0 0 5 5 5 4 PKD domain CarboxypepD_reg PF13620.6 gi|20092045|ref|NP_618120.1| - 2.2e-10 40.6 0.2 2.2e-10 40.6 0.2 6.0 6 1 1 7 7 7 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|20092045|ref|NP_618120.1| - 3.4e-08 33.4 0.1 3.4e-08 33.4 0.1 3.4 4 0 0 4 4 4 1 CarboxypepD_reg-like domain PKD_3 PF16820.5 gi|20092045|ref|NP_618120.1| - 0.19 11.5 6.6 1.2 8.9 0.1 3.6 3 0 0 3 3 3 0 PKD-like domain DUF3300 PF11737.8 gi|20092047|ref|NP_618122.1| - 0.057 13.0 0.2 0.098 12.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3300) Keratin_B2 PF01500.17 gi|20092048|ref|NP_618123.1| - 0.55 10.2 2.8 1 9.4 2.8 1.3 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein DUF2370 PF10176.9 gi|20092050|ref|NP_618125.1| - 0.0025 17.5 0.1 0.0031 17.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2370) ACT_6 PF13740.6 gi|20092051|ref|NP_618126.1| - 1.8e-16 59.8 0.2 2.1e-16 59.7 0.2 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|20092051|ref|NP_618126.1| - 3.6e-09 36.2 0.5 5.1e-09 35.7 0.5 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|20092051|ref|NP_618126.1| - 2e-05 25.1 1.1 3e-05 24.5 0.8 1.4 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|20092051|ref|NP_618126.1| - 0.0092 15.8 0.8 0.013 15.2 0.8 1.3 1 0 0 1 1 1 1 ACT domain DUF2769 PF10967.8 gi|20092052|ref|NP_618127.1| - 1.5e-06 28.8 9.0 4.3e-05 24.1 9.3 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF2769) C1_2 PF03107.16 gi|20092052|ref|NP_618127.1| - 0.36 11.2 8.9 3 8.2 1.0 2.4 2 0 0 2 2 2 0 C1 domain SKI PF01202.22 gi|20092053|ref|NP_618128.1| - 1.1e-32 113.3 0.0 1.4e-32 113.0 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase Cytidylate_kin2 PF13189.6 gi|20092053|ref|NP_618128.1| - 5.5e-08 33.1 0.6 2.4e-05 24.6 0.1 2.2 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 gi|20092053|ref|NP_618128.1| - 1.2e-07 32.3 0.1 3.4e-07 30.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|20092053|ref|NP_618128.1| - 8.6e-06 25.6 0.0 1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.6 gi|20092053|ref|NP_618128.1| - 2e-05 24.8 0.0 3.7e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|20092053|ref|NP_618128.1| - 0.0002 21.8 0.2 0.00057 20.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|20092053|ref|NP_618128.1| - 0.00031 20.7 0.3 0.33 10.8 0.1 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA PF00004.29 gi|20092053|ref|NP_618128.1| - 0.0018 18.7 0.3 0.0036 17.7 0.2 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|20092053|ref|NP_618128.1| - 0.0055 15.9 0.2 0.065 12.4 0.1 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 gi|20092053|ref|NP_618128.1| - 0.0064 16.9 0.0 0.0083 16.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|20092053|ref|NP_618128.1| - 0.0067 15.7 0.0 0.0078 15.5 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.22 gi|20092053|ref|NP_618128.1| - 0.0085 15.7 0.2 4.1 7.0 0.0 2.1 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|20092053|ref|NP_618128.1| - 0.011 16.3 0.4 0.018 15.5 0.4 1.4 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|20092053|ref|NP_618128.1| - 0.015 15.2 0.9 0.033 14.1 0.2 1.8 2 0 0 2 2 2 0 NTPase ATP_bind_2 PF03668.15 gi|20092053|ref|NP_618128.1| - 0.034 13.5 0.4 0.088 12.1 0.4 1.7 1 1 0 1 1 1 0 P-loop ATPase protein family APS_kinase PF01583.20 gi|20092053|ref|NP_618128.1| - 0.046 13.6 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.6 gi|20092053|ref|NP_618128.1| - 0.055 13.8 0.2 0.13 12.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain CoaE PF01121.20 gi|20092053|ref|NP_618128.1| - 0.076 12.7 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_2 PF07724.14 gi|20092053|ref|NP_618128.1| - 0.08 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) 6PF2K PF01591.18 gi|20092053|ref|NP_618128.1| - 0.12 11.6 0.0 0.25 10.6 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_28 PF13521.6 gi|20092053|ref|NP_618128.1| - 0.14 12.4 0.2 0.19 12.0 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|20092053|ref|NP_618128.1| - 0.15 11.8 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ADK PF00406.22 gi|20092053|ref|NP_618128.1| - 0.18 11.9 0.3 19 5.4 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase MMR_HSR1 PF01926.23 gi|20092053|ref|NP_618128.1| - 0.18 11.9 0.8 0.56 10.3 0.8 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2769 PF10967.8 gi|20092054|ref|NP_618129.1| - 1.1e-12 48.4 14.8 1.9e-12 47.6 14.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) TerY_C PF15616.6 gi|20092054|ref|NP_618129.1| - 0.0016 18.6 4.7 0.0018 18.4 4.7 1.2 1 0 0 1 1 1 1 TerY-C metal binding domain NS3_envE PF02723.14 gi|20092055|ref|NP_618130.1| - 8.2 6.6 14.7 0.13 12.4 3.7 2.1 1 1 1 2 2 2 0 Non-structural protein NS3/Small envelope protein E Trm56 PF01994.16 gi|20092057|ref|NP_618132.1| - 5.5e-48 161.8 0.0 6.7e-48 161.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Glycos_transf_3 PF00591.21 gi|20092058|ref|NP_618133.1| - 5.6e-14 52.4 0.1 3.7e-13 49.7 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|20092058|ref|NP_618133.1| - 4.9e-13 48.5 0.4 1.3e-12 47.2 0.1 1.9 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|20092058|ref|NP_618133.1| - 5.8e-13 48.5 0.0 1.5e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Molydop_binding PF01568.21 gi|20092058|ref|NP_618133.1| - 0.00036 20.5 0.1 0.0016 18.5 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|20092058|ref|NP_618133.1| - 0.0077 16.4 0.0 0.023 14.9 0.0 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl PF00364.22 gi|20092058|ref|NP_618133.1| - 0.014 15.2 0.5 0.23 11.3 0.1 3.1 2 0 0 2 2 2 0 Biotin-requiring enzyme DUF2254 PF10011.9 gi|20092058|ref|NP_618133.1| - 0.038 12.8 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) EamA PF00892.20 gi|20092059|ref|NP_618134.1| - 7.5e-46 155.7 40.3 6.3e-25 87.9 15.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|20092059|ref|NP_618134.1| - 5.3e-10 39.1 10.7 8.8e-09 35.1 10.7 2.0 1 1 0 1 1 1 1 Triose-phosphate Transporter family MgtE PF01769.16 gi|20092061|ref|NP_618136.1| - 0.00014 22.2 2.8 0.00014 22.2 2.8 1.0 1 0 0 1 1 1 1 Divalent cation transporter Phage_holin_5_2 PF16079.5 gi|20092061|ref|NP_618136.1| - 0.00022 21.5 2.5 0.00028 21.1 2.5 1.1 1 0 0 1 1 1 1 Phage holin family Hol44, in holin superfamily V Peptidase_A22B PF04258.13 gi|20092061|ref|NP_618136.1| - 0.0076 15.8 1.4 0.0078 15.8 1.4 1.0 1 0 0 1 1 1 1 Signal peptide peptidase DUF2207 PF09972.9 gi|20092061|ref|NP_618136.1| - 0.078 11.7 3.1 0.075 11.8 3.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Otopetrin PF03189.13 gi|20092061|ref|NP_618136.1| - 0.083 11.7 2.8 0.081 11.7 2.8 1.0 1 0 0 1 1 1 0 Otopetrin ABC2_membrane PF01061.24 gi|20092061|ref|NP_618136.1| - 0.09 12.2 6.9 0.098 12.1 6.9 1.0 1 0 0 1 1 1 0 ABC-2 type transporter Phage_holin_3_6 PF07332.11 gi|20092061|ref|NP_618136.1| - 0.38 10.8 5.9 0.46 10.5 5.9 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III MacB_PCD PF12704.7 gi|20092063|ref|NP_618138.1| - 1e-15 58.6 1.3 1e-15 58.6 1.3 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20092063|ref|NP_618138.1| - 3.4e-09 37.1 6.0 3.4e-09 37.1 6.0 2.6 3 0 0 3 3 3 1 FtsX-like permease family TcfC PF16967.5 gi|20092064|ref|NP_618139.1| - 6.1e-06 25.6 0.0 0.13 11.8 0.0 3.3 3 0 0 3 3 3 2 E-set like domain FixH PF05751.11 gi|20092064|ref|NP_618139.1| - 0.14 12.1 0.4 0.7 9.9 0.0 2.4 2 0 0 2 2 2 0 FixH GATase_3 PF07685.14 gi|20092066|ref|NP_618141.1| - 3.2e-50 170.5 0.1 5e-50 169.8 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|20092066|ref|NP_618141.1| - 5.6e-20 71.7 0.0 1.3e-19 70.5 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|20092066|ref|NP_618141.1| - 2.7e-19 69.8 0.1 2.8e-18 66.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain GATase PF00117.28 gi|20092066|ref|NP_618141.1| - 4e-05 23.5 0.0 8.1e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|20092066|ref|NP_618141.1| - 0.0066 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DUF1611 PF07755.11 gi|20092066|ref|NP_618141.1| - 0.093 12.0 0.0 24 4.1 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain OCD_Mu_crystall PF02423.15 gi|20092068|ref|NP_618143.1| - 1.4e-114 382.4 0.2 1.5e-114 382.2 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|20092068|ref|NP_618143.1| - 3.6e-08 33.6 0.0 6.8e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|20092068|ref|NP_618143.1| - 0.0067 17.0 0.0 0.015 15.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF5616 PF18481.1 gi|20092069|ref|NP_618144.1| - 3.8e-45 153.7 0.0 5e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|20092069|ref|NP_618144.1| - 1.8e-17 62.7 0.0 3.8e-17 61.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF434) TPR_17 PF13431.6 gi|20092070|ref|NP_618145.1| - 1.8e-36 121.9 7.0 7.9e-05 22.8 0.0 7.5 8 0 0 8 8 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092070|ref|NP_618145.1| - 9e-31 103.5 31.2 2.1e-05 24.3 0.1 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20092070|ref|NP_618145.1| - 4.8e-26 91.1 21.0 1.3e-06 28.9 1.2 5.1 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092070|ref|NP_618145.1| - 4.5e-23 81.5 11.3 1.4e-06 28.7 0.3 6.1 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092070|ref|NP_618145.1| - 1.5e-21 74.7 10.7 0.0005 20.1 0.0 7.1 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092070|ref|NP_618145.1| - 2.7e-21 74.4 17.6 0.00032 20.4 0.1 7.4 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092070|ref|NP_618145.1| - 5.7e-21 73.4 18.7 0.0018 18.9 0.4 7.9 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092070|ref|NP_618145.1| - 5.6e-20 70.8 19.8 0.0011 18.5 0.3 8.1 3 1 5 8 8 8 7 TPR repeat TPR_12 PF13424.6 gi|20092070|ref|NP_618145.1| - 4.8e-16 58.8 26.1 2.3e-05 24.6 0.4 6.1 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092070|ref|NP_618145.1| - 7.5e-11 42.0 11.3 0.00026 21.1 0.1 4.8 2 1 4 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092070|ref|NP_618145.1| - 4e-06 26.5 15.6 0.53 10.4 0.1 6.1 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092070|ref|NP_618145.1| - 9.7e-05 22.1 25.6 0.083 12.8 1.4 6.3 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|20092070|ref|NP_618145.1| - 0.00013 22.3 0.6 11 6.4 0.0 4.7 2 1 3 5 5 5 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|20092070|ref|NP_618145.1| - 0.00014 21.2 1.7 0.0039 16.4 0.0 3.2 1 1 3 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20092070|ref|NP_618145.1| - 0.00025 21.2 11.8 0.036 14.3 0.2 4.0 1 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|20092070|ref|NP_618145.1| - 0.00068 20.1 10.8 6.5 7.6 0.1 6.3 8 0 0 8 8 6 1 Tetratricopeptide repeat DUF4192 PF13830.6 gi|20092070|ref|NP_618145.1| - 0.00076 19.6 1.0 0.28 11.2 0.0 3.6 2 1 2 4 4 4 1 Domain of unknown function (DUF4192) TPR_21 PF09976.9 gi|20092070|ref|NP_618145.1| - 0.013 15.3 8.7 7.8 6.2 0.1 5.5 4 2 3 7 7 7 0 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|20092070|ref|NP_618145.1| - 0.024 14.0 8.3 2.8 7.2 0.4 3.8 1 1 3 4 4 4 0 MalT-like TPR region NARP1 PF12569.8 gi|20092070|ref|NP_618145.1| - 0.11 11.3 1.0 6.2 5.6 0.1 3.0 2 1 0 3 3 3 0 NMDA receptor-regulated protein 1 DUF4810 PF16068.5 gi|20092070|ref|NP_618145.1| - 0.11 13.0 5.4 34 5.1 0.0 5.0 3 2 2 6 6 6 0 Domain of unknown function (DUF4810) DUF627 PF04781.12 gi|20092070|ref|NP_618145.1| - 0.2 11.7 2.6 55 3.8 0.2 4.0 2 1 2 4 4 4 0 Protein of unknown function (DUF627) TPR_3 PF07720.12 gi|20092070|ref|NP_618145.1| - 5.2 7.2 15.3 11 6.2 0.9 5.6 7 0 0 7 7 7 0 Tetratricopeptide repeat DUF948 PF06103.11 gi|20092072|ref|NP_618147.1| - 0.19 12.0 0.2 0.29 11.4 0.2 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) VSG_B PF13206.6 gi|20092073|ref|NP_618148.1| - 0.014 14.7 0.1 0.022 14.0 0.1 1.2 1 0 0 1 1 1 0 Trypanosomal VSG domain AAA_15 PF13175.6 gi|20092073|ref|NP_618148.1| - 0.34 10.6 10.3 0.064 12.9 6.9 1.4 2 0 0 2 2 2 0 AAA ATPase domain Metallophos PF00149.28 gi|20092075|ref|NP_618150.1| - 1.3e-25 91.1 0.1 2e-25 90.5 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20092075|ref|NP_618150.1| - 7.2e-05 23.0 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|20092075|ref|NP_618150.1| - 0.091 12.1 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily TPR_17 PF13431.6 gi|20092076|ref|NP_618151.1| - 1.5e-40 134.7 17.4 0.00014 22.0 0.1 9.0 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092076|ref|NP_618151.1| - 1.1e-39 131.3 31.3 1.7e-06 27.7 1.2 9.5 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092076|ref|NP_618151.1| - 2e-34 114.9 16.3 0.00098 19.2 0.0 9.6 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092076|ref|NP_618151.1| - 4.2e-34 116.0 25.7 2.2e-08 33.6 0.5 9.1 5 3 4 9 9 9 7 TPR repeat TPR_19 PF14559.6 gi|20092076|ref|NP_618151.1| - 6.4e-29 100.3 20.1 6.8e-07 29.7 1.7 6.1 4 2 3 7 7 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092076|ref|NP_618151.1| - 1.7e-26 90.9 26.3 2.4e-05 23.9 1.0 9.5 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092076|ref|NP_618151.1| - 1.2e-25 88.0 22.0 0.00038 21.0 0.3 9.5 2 1 8 10 10 9 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20092076|ref|NP_618151.1| - 1.3e-25 89.7 24.3 2.9e-06 27.8 2.7 5.0 4 1 1 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20092076|ref|NP_618151.1| - 1.2e-17 63.9 27.5 2.4e-05 24.5 0.8 7.0 2 1 5 8 8 7 7 Tetratricopeptide repeat TPR_15 PF13429.6 gi|20092076|ref|NP_618151.1| - 3.8e-12 46.0 1.6 1.4e-05 24.4 0.0 3.6 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_4 PF07721.14 gi|20092076|ref|NP_618151.1| - 5.2e-12 45.2 3.5 3.9 8.4 0.2 7.8 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092076|ref|NP_618151.1| - 4.5e-11 42.2 31.0 0.022 14.6 0.0 8.2 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092076|ref|NP_618151.1| - 8.3e-11 41.1 15.2 0.41 10.8 0.0 8.2 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092076|ref|NP_618151.1| - 3.5e-08 33.5 13.4 0.075 13.2 0.1 5.1 2 1 1 5 5 5 4 Tetratricopeptide repeat DUF627 PF04781.12 gi|20092076|ref|NP_618151.1| - 2.4e-05 24.3 6.8 1.2 9.1 0.2 5.2 3 2 1 6 6 6 2 Protein of unknown function (DUF627) TPR_21 PF09976.9 gi|20092076|ref|NP_618151.1| - 0.0002 21.1 5.7 9.3 5.9 0.1 6.1 3 1 4 7 7 7 0 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 gi|20092076|ref|NP_618151.1| - 0.002 18.4 4.2 1.7 9.0 0.2 3.9 1 1 3 4 4 4 1 Tetratricopeptide repeat BTAD PF03704.17 gi|20092076|ref|NP_618151.1| - 0.0034 17.8 17.5 3 8.3 0.1 4.7 2 2 3 6 6 6 2 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|20092076|ref|NP_618151.1| - 0.0089 15.0 9.7 0.51 9.2 0.4 4.5 1 1 4 6 6 6 1 NMDA receptor-regulated protein 1 SHNi-TPR PF10516.9 gi|20092076|ref|NP_618151.1| - 0.009 15.4 0.8 0.29 10.6 0.0 3.5 4 0 0 4 4 4 1 SHNi-TPR SLT_L PF14718.6 gi|20092076|ref|NP_618151.1| - 0.03 14.5 1.6 4.6 7.4 0.0 4.1 5 0 0 5 5 4 0 Soluble lytic murein transglycosylase L domain OB_Dis3 PF17849.1 gi|20092076|ref|NP_618151.1| - 0.035 14.1 0.0 2.5 8.2 0.0 3.5 4 0 0 4 4 4 0 Dis3-like cold-shock domain 2 (CSD2) TOM20_plant PF06552.12 gi|20092076|ref|NP_618151.1| - 0.044 13.5 0.2 7.1 6.3 0.0 3.4 2 1 0 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_6 PF13174.6 gi|20092076|ref|NP_618151.1| - 0.17 12.6 11.3 2.6 8.9 0.2 6.0 6 0 0 6 6 6 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20092076|ref|NP_618151.1| - 0.56 10.5 14.8 6.2 7.1 0.9 4.7 1 1 5 7 7 7 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.12 gi|20092076|ref|NP_618151.1| - 1.2 9.3 5.3 2.6 8.1 0.0 4.0 5 0 0 5 5 5 0 Tetratricopeptide repeat FxsA PF04186.13 gi|20092077|ref|NP_618152.1| - 1.4e-33 115.3 4.4 1.7e-33 115.0 4.4 1.0 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein LrgB PF04172.16 gi|20092078|ref|NP_618153.1| - 9e-79 263.9 13.6 1e-78 263.7 13.6 1.0 1 0 0 1 1 1 1 LrgB-like family CbtA PF09490.10 gi|20092078|ref|NP_618153.1| - 0.01 15.6 1.5 0.01 15.6 1.5 2.4 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtA) DUF2953 PF11167.8 gi|20092078|ref|NP_618153.1| - 0.14 12.2 6.4 3.7 7.7 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) LrgA PF03788.14 gi|20092079|ref|NP_618154.1| - 9.7e-28 96.0 8.0 1.2e-27 95.6 8.0 1.1 1 0 0 1 1 1 1 LrgA family Aminotran_5 PF00266.19 gi|20092080|ref|NP_618155.1| - 2.8e-86 289.8 0.0 3.5e-86 289.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|20092080|ref|NP_618155.1| - 1.2e-07 31.3 0.0 1.8e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|20092080|ref|NP_618155.1| - 0.00025 20.5 0.0 0.00045 19.6 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 gi|20092080|ref|NP_618155.1| - 0.1 11.3 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.16 gi|20092081|ref|NP_618156.1| - 5.8e-44 149.3 0.0 6.4e-44 149.2 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain TIR-like PF10137.9 gi|20092082|ref|NP_618157.1| - 2.9e-32 111.1 0.0 1.2e-31 109.1 0.0 2.0 2 0 0 2 2 2 1 Predicted nucleotide-binding protein containing TIR-like domain Peripla_BP_4 PF13407.6 gi|20092082|ref|NP_618157.1| - 3.7e-12 46.4 0.0 6.1e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain Fer4_19 PF06902.11 gi|20092082|ref|NP_618157.1| - 0.0099 15.9 0.0 0.28 11.3 0.0 2.4 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Peripla_BP_3 PF13377.6 gi|20092082|ref|NP_618157.1| - 0.11 12.8 0.0 0.27 11.5 0.0 1.6 1 0 0 1 1 1 0 Periplasmic binding protein-like domain PfkB PF00294.24 gi|20092083|ref|NP_618158.1| - 9.2e-18 64.6 0.0 1.3e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase RimK PF08443.11 gi|20092084|ref|NP_618159.1| - 1.3e-18 67.3 0.0 6e-17 61.9 0.0 2.4 2 1 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|20092084|ref|NP_618159.1| - 4.6e-14 52.2 0.0 1.3e-13 50.7 0.0 1.7 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Rimk_N PF18030.1 gi|20092084|ref|NP_618159.1| - 1.1e-07 32.2 0.0 1.9e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|20092084|ref|NP_618159.1| - 4.3e-07 29.4 0.0 2e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|20092084|ref|NP_618159.1| - 0.00011 21.6 0.1 0.0032 16.8 0.0 2.3 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|20092084|ref|NP_618159.1| - 0.00083 19.4 0.0 0.0014 18.7 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|20092084|ref|NP_618159.1| - 0.025 14.0 0.1 0.14 11.6 0.1 2.0 1 1 1 2 2 2 0 ATP-grasp domain DUF4650 PF15509.6 gi|20092084|ref|NP_618159.1| - 0.19 11.0 0.0 0.26 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4650) PTH2 PF01981.16 gi|20092085|ref|NP_618160.1| - 1.8e-38 131.4 0.1 2e-38 131.3 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Transglut_core PF01841.19 gi|20092086|ref|NP_618161.1| - 7.9e-06 26.3 0.0 1.6e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily TruD PF01142.18 gi|20092087|ref|NP_618162.1| - 1.3e-163 544.7 0.1 1.5e-163 544.5 0.1 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PMT_2 PF13231.6 gi|20092088|ref|NP_618163.1| - 0.28 11.4 13.2 0.49 10.6 13.2 1.4 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase YGGT PF02325.17 gi|20092088|ref|NP_618163.1| - 0.3 11.5 7.3 0.59 10.6 7.3 1.5 1 1 0 1 1 1 0 YGGT family SieB PF14163.6 gi|20092088|ref|NP_618163.1| - 2.6 7.6 6.8 0.52 9.8 3.0 1.7 2 0 0 2 2 2 0 Super-infection exclusion protein B HEAT_2 PF13646.6 gi|20092090|ref|NP_618165.1| - 5.1e-44 148.6 19.4 9.8e-17 61.1 0.6 3.3 1 1 2 4 4 4 4 HEAT repeats HEAT_PBS PF03130.16 gi|20092090|ref|NP_618165.1| - 3.1e-21 73.8 9.1 5.3e-05 23.5 0.3 6.7 7 0 0 7 7 6 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20092090|ref|NP_618165.1| - 2.7e-16 58.3 0.3 0.0047 17.1 0.1 6.0 6 0 0 6 6 6 4 HEAT repeat Arm PF00514.23 gi|20092090|ref|NP_618165.1| - 1.8e-12 46.8 0.3 0.0027 17.7 0.0 5.6 4 1 1 5 5 5 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|20092090|ref|NP_618165.1| - 1.7e-09 38.0 2.5 0.0049 17.3 0.0 5.2 5 1 1 6 6 6 2 HEAT-like repeat Cnd1 PF12717.7 gi|20092090|ref|NP_618165.1| - 4.2e-09 36.6 0.2 0.0075 16.3 0.1 3.2 2 2 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Aconitase_B_N PF11791.8 gi|20092090|ref|NP_618165.1| - 2.2e-07 31.1 1.7 0.067 13.3 0.0 4.7 2 1 2 5 5 5 2 Aconitate B N-terminal domain Adaptin_N PF01602.20 gi|20092090|ref|NP_618165.1| - 0.00056 18.6 0.0 0.83 8.1 0.0 3.0 2 1 0 2 2 2 2 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|20092090|ref|NP_618165.1| - 0.0019 18.8 0.0 4.1 8.1 0.0 3.4 2 2 2 4 4 4 1 Vacuolar 14 Fab1-binding region IFRD PF05004.13 gi|20092090|ref|NP_618165.1| - 0.0078 15.4 1.3 0.91 8.6 0.0 3.3 1 1 2 3 3 3 1 Interferon-related developmental regulator (IFRD) BRCC36_C PF18110.1 gi|20092090|ref|NP_618165.1| - 0.016 15.3 0.2 22 5.3 0.0 3.9 3 1 0 4 4 4 0 BRCC36 C-terminal helical domain Trypan_PARP PF05887.11 gi|20092090|ref|NP_618165.1| - 0.023 14.7 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) RasGEF_N_2 PF14663.6 gi|20092090|ref|NP_618165.1| - 0.043 14.2 1.9 24 5.4 0.0 3.8 2 2 3 5 5 5 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain ERAP1_C PF11838.8 gi|20092090|ref|NP_618165.1| - 0.14 11.7 0.3 6.7 6.2 0.1 2.5 1 1 1 2 2 2 0 ERAP1-like C-terminal domain RNaseH_C PF09293.10 gi|20092092|ref|NP_618167.1| - 0.067 13.5 0.1 0.11 12.9 0.1 1.4 1 1 0 1 1 1 0 T4 RNase H, C terminal DUF4013 PF13197.6 gi|20092093|ref|NP_618168.1| - 3.2e-11 43.3 17.7 1.3e-10 41.4 16.9 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) CTP_synth_N PF06418.14 gi|20092094|ref|NP_618169.1| - 1.5e-125 417.8 0.9 2.1e-125 417.4 0.9 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|20092094|ref|NP_618169.1| - 3.7e-56 189.9 0.0 6.7e-56 189.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|20092094|ref|NP_618169.1| - 2.2e-05 24.3 0.0 0.00012 22.0 0.0 2.2 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|20092094|ref|NP_618169.1| - 0.00024 21.2 0.0 0.0011 19.0 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|20092094|ref|NP_618169.1| - 0.036 13.1 0.8 0.062 12.3 0.2 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DJ-1_PfpI PF01965.24 gi|20092094|ref|NP_618169.1| - 0.16 11.8 0.0 1.1 9.0 0.0 2.3 2 1 0 2 2 2 0 DJ-1/PfpI family Trm112p PF03966.16 gi|20092096|ref|NP_618171.1| - 8.1e-13 48.7 0.5 1.3e-12 48.1 0.5 1.3 1 0 0 1 1 1 1 Trm112p-like protein Cys_rich_KTR PF14205.6 gi|20092096|ref|NP_618171.1| - 0.0023 17.7 1.3 0.0052 16.6 1.3 1.6 1 1 0 1 1 1 1 Cysteine-rich KTR Elf1 PF05129.13 gi|20092096|ref|NP_618171.1| - 0.0038 17.2 0.0 0.0038 17.2 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like C1_4 PF07975.12 gi|20092096|ref|NP_618171.1| - 0.0086 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 TFIIH C1-like domain zf-C3HC4_5 PF17121.5 gi|20092096|ref|NP_618171.1| - 0.018 14.9 1.1 2.7 8.0 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Lar_restr_allev PF14354.6 gi|20092096|ref|NP_618171.1| - 0.026 14.9 0.3 0.036 14.5 0.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-WRNIP1_ubi PF18279.1 gi|20092096|ref|NP_618171.1| - 0.04 14.6 0.7 8.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain Zn_ribbon_SprT PF17283.2 gi|20092096|ref|NP_618171.1| - 0.042 13.8 0.7 8.1 6.4 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-C2H2_12 PF18112.1 gi|20092096|ref|NP_618171.1| - 0.043 14.3 5.4 0.32 11.5 0.7 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DUF3797 PF12677.7 gi|20092096|ref|NP_618171.1| - 0.046 13.6 6.9 0.31 11.0 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) PADR1 PF08063.12 gi|20092096|ref|NP_618171.1| - 0.076 12.8 0.3 3.4 7.5 0.0 2.1 2 0 0 2 2 2 0 PADR1 (NUC008) domain TF_Zn_Ribbon PF08271.12 gi|20092096|ref|NP_618171.1| - 0.079 12.5 4.2 0.74 9.4 4.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding CcmH PF03918.14 gi|20092096|ref|NP_618171.1| - 0.09 12.1 0.3 4.7 6.5 0.0 2.0 1 1 1 2 2 2 0 Cytochrome C biogenesis protein zf-C6H2 PF15801.5 gi|20092096|ref|NP_618171.1| - 0.097 13.0 0.4 13 6.2 0.0 2.1 2 0 0 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding Anti-TRAP PF15777.5 gi|20092096|ref|NP_618171.1| - 0.11 12.5 2.0 5.4 7.1 0.3 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein YacG PF03884.14 gi|20092096|ref|NP_618171.1| - 0.11 12.2 0.5 14 5.5 0.1 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG CoiA PF06054.11 gi|20092096|ref|NP_618171.1| - 0.11 11.6 0.6 0.46 9.6 0.0 1.8 1 1 1 2 2 2 0 Competence protein CoiA-like family FdhE PF04216.12 gi|20092096|ref|NP_618171.1| - 0.13 12.2 0.1 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-RRPl_C4 PF17026.5 gi|20092096|ref|NP_618171.1| - 0.13 12.4 0.4 0.39 10.9 0.5 1.7 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type A2L_zn_ribbon PF08792.10 gi|20092096|ref|NP_618171.1| - 0.16 11.7 1.9 0.77 9.5 1.9 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain DpnI PF06044.12 gi|20092096|ref|NP_618171.1| - 0.16 11.6 0.1 0.18 11.4 0.1 1.0 1 0 0 1 1 1 0 Dam-replacing family CK_II_beta PF01214.18 gi|20092096|ref|NP_618171.1| - 0.16 11.8 0.2 0.17 11.7 0.2 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit zf-Di19 PF05605.12 gi|20092096|ref|NP_618171.1| - 0.19 12.0 4.2 7.9 6.9 0.2 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_UBOX PF13445.6 gi|20092096|ref|NP_618171.1| - 0.26 11.3 4.3 1.5 8.9 0.8 2.1 2 0 0 2 2 2 0 RING-type zinc-finger RNA_POL_M_15KD PF02150.16 gi|20092096|ref|NP_618171.1| - 0.47 10.4 3.4 1.8 8.5 3.6 1.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.16 gi|20092096|ref|NP_618171.1| - 1 9.5 8.8 7 6.8 0.3 2.8 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prim_Zn_Ribbon PF08273.12 gi|20092096|ref|NP_618171.1| - 2.4 8.5 6.0 27 5.2 6.0 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Prismane PF03063.20 gi|20092097|ref|NP_618172.1| - 1.2e-172 575.2 2.2 1.4e-172 575.0 2.2 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Peptidase_M24 PF00557.24 gi|20092097|ref|NP_618172.1| - 0.12 12.0 0.1 0.39 10.4 0.1 1.9 2 0 0 2 2 2 0 Metallopeptidase family M24 Fer4_11 PF13247.6 gi|20092098|ref|NP_618173.1| - 4e-12 46.1 23.5 7.9e-08 32.3 8.4 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20092098|ref|NP_618173.1| - 3.7e-08 33.4 32.7 0.00044 20.4 12.1 3.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092098|ref|NP_618173.1| - 7.4e-08 32.9 34.7 0.0017 18.9 15.4 3.7 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092098|ref|NP_618173.1| - 8e-07 28.8 35.9 0.051 13.7 2.8 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092098|ref|NP_618173.1| - 8.3e-07 29.0 32.7 0.014 15.5 13.7 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20092098|ref|NP_618173.1| - 4.3e-06 26.3 40.0 0.026 14.4 3.1 5.4 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092098|ref|NP_618173.1| - 4.7e-06 26.5 32.4 0.033 14.3 3.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092098|ref|NP_618173.1| - 8.7e-05 22.9 28.5 0.00013 22.3 6.9 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092098|ref|NP_618173.1| - 0.0025 17.9 31.4 0.14 12.4 1.4 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20092098|ref|NP_618173.1| - 0.0041 18.0 16.7 0.0072 17.2 3.5 4.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20092098|ref|NP_618173.1| - 0.03 15.2 35.9 2.3 9.2 0.3 4.9 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|20092098|ref|NP_618173.1| - 0.28 11.8 38.4 0.43 11.2 3.0 5.1 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|20092098|ref|NP_618173.1| - 1.1 9.0 27.8 1.9 8.3 4.1 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Usp PF00582.26 gi|20092099|ref|NP_618174.1| - 6.4e-36 124.0 0.7 7.4e-36 123.8 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|20092099|ref|NP_618174.1| - 0.084 13.7 0.0 0.12 13.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain FR47 PF08445.10 gi|20092099|ref|NP_618174.1| - 0.26 11.3 1.2 28 4.8 0.2 2.5 3 0 0 3 3 3 0 FR47-like protein Gate PF07670.14 gi|20092100|ref|NP_618175.1| - 1e-08 35.5 21.6 8.3e-05 22.8 5.3 2.9 2 2 0 2 2 2 2 Nucleoside recognition Usp PF00582.26 gi|20092101|ref|NP_618176.1| - 3.5e-36 124.8 0.8 3.9e-36 124.7 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family PP2 PF14299.6 gi|20092101|ref|NP_618176.1| - 0.15 12.1 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Phloem protein 2 PmbA_TldD PF01523.16 gi|20092102|ref|NP_618177.1| - 2e-51 175.5 0.8 3.4e-51 174.8 0.8 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|20092103|ref|NP_618178.1| - 5.9e-65 219.9 0.4 8.4e-65 219.4 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|20092104|ref|NP_618179.1| - 1.3e-32 113.0 5.0 2.2e-32 112.3 5.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|20092104|ref|NP_618179.1| - 1.4e-27 96.7 0.0 3.4e-20 72.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|20092104|ref|NP_618179.1| - 2.4e-16 59.7 0.2 1.3e-09 37.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|20092104|ref|NP_618179.1| - 5.8e-15 55.4 0.0 1.1e-08 35.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|20092104|ref|NP_618179.1| - 1.6e-10 40.8 0.5 3.3e-10 39.8 0.5 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|20092104|ref|NP_618179.1| - 2e-10 40.8 0.0 0.00022 21.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20092104|ref|NP_618179.1| - 1.5e-07 31.9 0.0 0.0036 17.7 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|20092104|ref|NP_618179.1| - 4.3e-06 26.0 2.3 0.03 13.4 0.0 3.1 4 0 0 4 4 4 2 MCM P-loop domain AAA_22 PF13401.6 gi|20092104|ref|NP_618179.1| - 3.9e-05 23.9 0.0 0.0019 18.4 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_3 PF07726.11 gi|20092104|ref|NP_618179.1| - 0.00027 20.8 0.0 1 9.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20092104|ref|NP_618179.1| - 0.0004 20.2 0.1 0.19 11.5 0.1 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activ_2 PF14532.6 gi|20092104|ref|NP_618179.1| - 0.00056 20.0 0.0 0.22 11.6 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|20092104|ref|NP_618179.1| - 0.0013 18.3 0.0 0.0073 15.8 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|20092104|ref|NP_618179.1| - 0.0018 18.6 1.0 0.034 14.5 1.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092104|ref|NP_618179.1| - 0.0029 18.0 0.0 0.17 12.3 0.0 2.7 3 0 0 3 3 2 1 AAA ATPase domain Parvo_NS1 PF01057.17 gi|20092104|ref|NP_618179.1| - 0.005 16.0 0.0 0.0091 15.1 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|20092104|ref|NP_618179.1| - 0.0066 15.9 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein TIP49 PF06068.13 gi|20092104|ref|NP_618179.1| - 0.0085 15.3 1.0 3.2 6.9 0.0 2.6 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_30 PF13604.6 gi|20092104|ref|NP_618179.1| - 0.012 15.4 0.0 0.055 13.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|20092104|ref|NP_618179.1| - 0.015 14.4 0.0 0.063 12.3 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|20092104|ref|NP_618179.1| - 0.02 15.5 0.0 0.068 13.7 0.0 2.0 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|20092104|ref|NP_618179.1| - 0.023 14.4 0.0 0.077 12.7 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|20092104|ref|NP_618179.1| - 0.03 14.5 0.0 0.087 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|20092104|ref|NP_618179.1| - 0.04 13.1 0.0 0.074 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|20092104|ref|NP_618179.1| - 0.095 12.9 0.0 0.29 11.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|20092104|ref|NP_618179.1| - 0.12 11.3 0.0 0.22 10.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Styelin PF17562.2 gi|20092104|ref|NP_618179.1| - 0.13 12.6 0.0 0.34 11.3 0.0 1.6 1 0 0 1 1 1 0 Styelin ABC_tran PF00005.27 gi|20092104|ref|NP_618179.1| - 0.16 12.5 0.3 0.48 10.9 0.0 2.0 2 0 0 2 2 1 0 ABC transporter TPR_12 PF13424.6 gi|20092105|ref|NP_618180.1| - 5.8e-18 64.9 12.0 5.3e-06 26.6 0.2 4.6 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092105|ref|NP_618180.1| - 1e-13 50.5 7.2 0.00028 20.6 0.2 5.7 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092105|ref|NP_618180.1| - 1.1e-13 50.1 8.5 0.00038 20.3 0.3 5.9 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092105|ref|NP_618180.1| - 7.7e-10 38.8 5.0 0.85 10.6 0.1 6.0 3 3 3 6 6 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092105|ref|NP_618180.1| - 1.1e-09 37.8 7.0 0.01 15.7 0.0 5.2 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092105|ref|NP_618180.1| - 1.3e-09 37.4 14.0 0.42 10.9 0.3 5.9 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092105|ref|NP_618180.1| - 4.2e-09 36.5 3.8 1.5 9.6 0.2 6.0 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20092105|ref|NP_618180.1| - 3e-08 33.4 0.0 3e-05 23.6 0.0 2.6 1 1 1 2 2 2 2 MalT-like TPR region TPR_11 PF13414.6 gi|20092105|ref|NP_618180.1| - 5.3e-08 32.4 8.8 0.022 14.4 0.0 5.0 5 1 0 5 5 5 2 TPR repeat TPR_19 PF14559.6 gi|20092105|ref|NP_618180.1| - 9.7e-08 32.4 8.7 0.41 11.2 0.6 5.3 2 1 2 4 4 4 3 Tetratricopeptide repeat SPO22 PF08631.10 gi|20092105|ref|NP_618180.1| - 7.2e-07 29.0 6.0 0.0007 19.2 0.2 2.2 2 0 0 2 2 2 2 Meiosis protein SPO22/ZIP4 like TPR_16 PF13432.6 gi|20092105|ref|NP_618180.1| - 2.6e-06 28.0 2.6 0.02 15.5 0.0 4.6 4 1 1 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|20092105|ref|NP_618180.1| - 9.2e-06 24.8 10.8 0.1 11.5 0.7 3.4 1 1 1 3 3 3 3 NMDA receptor-regulated protein 1 TPR_7 PF13176.6 gi|20092105|ref|NP_618180.1| - 9.8e-06 25.3 4.3 0.6 10.3 0.1 5.5 5 1 0 5 5 5 1 Tetratricopeptide repeat SRP68 PF16969.5 gi|20092105|ref|NP_618180.1| - 2.7e-05 23.4 6.0 0.15 11.1 0.0 3.2 1 1 2 3 3 3 2 RNA-binding signal recognition particle 68 PTS_IIA PF02255.16 gi|20092105|ref|NP_618180.1| - 0.00013 21.9 7.9 0.64 10.1 0.6 4.0 4 1 1 5 5 4 2 PTS system, Lactose/Cellobiose specific IIA subunit TPR_17 PF13431.6 gi|20092105|ref|NP_618180.1| - 0.0016 18.7 7.1 4.4 7.9 0.0 5.9 6 3 0 6 6 5 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20092105|ref|NP_618180.1| - 0.0016 18.6 7.9 0.2 11.9 0.7 5.0 1 1 4 5 5 5 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.9 gi|20092105|ref|NP_618180.1| - 0.0019 17.9 8.8 0.026 14.3 1.6 3.4 2 2 1 3 3 3 1 Tetratricopeptide repeat-like domain YfdX PF10938.8 gi|20092105|ref|NP_618180.1| - 0.0035 17.3 10.5 0.078 12.9 1.5 3.9 3 2 1 4 4 4 1 YfdX protein Arfaptin PF06456.13 gi|20092105|ref|NP_618180.1| - 0.0037 16.9 2.1 0.015 14.9 0.8 2.1 2 0 0 2 2 2 1 Arfaptin-like domain DUF4398 PF14346.6 gi|20092105|ref|NP_618180.1| - 0.0051 17.4 7.9 0.52 11.0 1.8 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4398) TOM20_plant PF06552.12 gi|20092105|ref|NP_618180.1| - 0.026 14.3 3.7 33 4.2 0.0 4.0 1 1 1 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 PUL PF08324.11 gi|20092105|ref|NP_618180.1| - 0.029 13.6 4.1 0.18 11.0 0.2 2.4 1 1 0 2 2 2 0 PUL domain Cytochrom_B562 PF07361.11 gi|20092105|ref|NP_618180.1| - 0.03 15.0 6.2 0.62 10.7 0.2 3.3 3 1 0 3 3 3 0 Cytochrome b562 TPR_3 PF07720.12 gi|20092105|ref|NP_618180.1| - 0.038 14.0 0.9 14 5.8 0.0 3.6 4 0 0 4 4 3 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|20092105|ref|NP_618180.1| - 0.1 12.7 2.1 6.5 6.9 0.0 3.4 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 HAT PF02184.16 gi|20092105|ref|NP_618180.1| - 0.21 11.6 1.1 2.3 8.2 0.0 2.8 2 1 0 2 2 2 0 HAT (Half-A-TPR) repeat DUF2564 PF10819.8 gi|20092105|ref|NP_618180.1| - 0.24 11.8 3.6 2.9 8.4 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) Ribosomal_L22 PF00237.19 gi|20092105|ref|NP_618180.1| - 0.41 10.9 3.8 2.5 8.4 3.8 2.3 1 1 0 1 1 1 0 Ribosomal protein L22p/L17e MIT PF04212.18 gi|20092105|ref|NP_618180.1| - 5.3 7.2 18.7 3.6 7.7 0.2 5.1 4 2 1 5 5 5 0 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.6 gi|20092105|ref|NP_618180.1| - 7.7 6.7 16.7 17 5.6 0.2 5.2 6 1 0 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat DUF3040 PF11239.8 gi|20092106|ref|NP_618181.1| - 0.0073 16.6 0.9 0.35 11.2 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3040) Pannexin_like PF12534.8 gi|20092106|ref|NP_618181.1| - 0.049 12.7 0.1 0.063 12.4 0.1 1.1 1 0 0 1 1 1 0 Pannexin-like TM region of LRRC8 PhoR PF11808.8 gi|20092106|ref|NP_618181.1| - 0.097 13.1 0.2 0.097 13.1 0.2 2.1 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR DUF4191 PF13829.6 gi|20092106|ref|NP_618181.1| - 0.37 10.1 5.6 3.8 6.8 2.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) Gemini_mov PF01708.16 gi|20092106|ref|NP_618181.1| - 0.48 10.2 0.0 0.48 10.2 0.0 2.4 2 1 1 3 3 3 0 Geminivirus putative movement protein FA_desaturase PF00487.24 gi|20092106|ref|NP_618181.1| - 1.3 8.7 10.6 14 5.4 10.9 1.9 1 1 0 1 1 1 0 Fatty acid desaturase TraL PF07178.11 gi|20092106|ref|NP_618181.1| - 3.2 8.3 10.5 3.6 8.1 1.2 2.1 2 0 0 2 2 2 0 TraL protein TPR_12 PF13424.6 gi|20092107|ref|NP_618182.1| - 8.8e-23 80.4 6.5 8.5e-12 45.2 0.5 5.0 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092107|ref|NP_618182.1| - 7.1e-22 76.3 10.9 3.6e-06 26.6 0.6 6.4 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092107|ref|NP_618182.1| - 6.2e-20 70.4 4.8 1.4e-07 31.1 0.0 5.9 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092107|ref|NP_618182.1| - 1.6e-19 68.4 9.6 4.1e-05 23.4 0.3 6.6 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092107|ref|NP_618182.1| - 3.5e-15 54.9 14.1 1e-05 25.3 0.5 6.5 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092107|ref|NP_618182.1| - 8e-14 50.6 0.7 0.0028 17.6 0.0 5.4 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092107|ref|NP_618182.1| - 1.9e-08 34.4 0.5 1.5 9.8 0.0 5.5 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20092107|ref|NP_618182.1| - 3.6e-07 30.1 1.0 0.26 10.9 0.0 3.4 3 1 0 3 3 3 2 Tetratricopeptide repeat-like domain TPR_6 PF13174.6 gi|20092107|ref|NP_618182.1| - 6.3e-07 29.6 5.6 0.33 11.7 0.0 6.2 5 2 1 6 6 6 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20092107|ref|NP_618182.1| - 1.6e-06 27.7 0.0 0.012 15.0 0.0 2.2 2 0 0 2 2 2 2 MalT-like TPR region TetR_C_19 PF17924.1 gi|20092107|ref|NP_618182.1| - 5.5e-06 27.0 1.7 0.0095 16.5 0.1 3.3 3 0 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TPR_11 PF13414.6 gi|20092107|ref|NP_618182.1| - 2.8e-05 23.7 14.6 0.72 9.6 0.3 5.9 6 0 0 6 6 6 3 TPR repeat DUF2225 PF09986.9 gi|20092107|ref|NP_618182.1| - 9.1e-05 22.3 0.5 9.1e-05 22.3 0.5 2.3 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2225) TOM20_plant PF06552.12 gi|20092107|ref|NP_618182.1| - 0.00018 21.3 5.1 0.1 12.3 0.1 4.4 1 1 4 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_16 PF13432.6 gi|20092107|ref|NP_618182.1| - 0.00032 21.3 0.3 0.43 11.3 0.0 4.3 4 1 0 4 4 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20092107|ref|NP_618182.1| - 0.00073 19.7 8.9 0.12 12.8 0.0 4.5 4 1 0 4 4 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092107|ref|NP_618182.1| - 0.0017 18.8 6.8 0.24 11.9 0.2 4.9 2 2 1 3 3 3 1 Tetratricopeptide repeat TPR_3 PF07720.12 gi|20092107|ref|NP_618182.1| - 0.0062 16.5 2.4 2.3 8.3 0.3 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|20092107|ref|NP_618182.1| - 0.015 15.4 2.9 6.9 6.8 0.1 4.0 3 2 0 3 3 3 0 Anaphase-promoting complex subunit 5 TPR_15 PF13429.6 gi|20092107|ref|NP_618182.1| - 0.018 14.3 0.9 0.69 9.1 0.1 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092107|ref|NP_618182.1| - 0.019 15.1 0.0 1.3 9.2 0.0 3.5 4 1 0 4 4 3 0 Tetratricopeptide repeat SNAP PF14938.6 gi|20092107|ref|NP_618182.1| - 0.019 14.4 4.3 3.8 6.8 0.0 3.1 1 1 0 3 3 3 0 Soluble NSF attachment protein, SNAP RPN6_N PF18055.1 gi|20092107|ref|NP_618182.1| - 0.038 14.3 1.4 0.038 14.3 1.4 2.3 2 1 1 3 3 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain Ribosomal_S7 PF00177.21 gi|20092107|ref|NP_618182.1| - 0.054 13.1 0.3 0.71 9.5 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S7p/S5e RPN7 PF10602.9 gi|20092107|ref|NP_618182.1| - 0.1 12.3 1.8 8.3 6.1 0.1 3.1 2 2 1 3 3 3 0 26S proteasome subunit RPN7 Arfaptin PF06456.13 gi|20092107|ref|NP_618182.1| - 0.1 12.2 3.0 0.69 9.4 0.3 2.4 2 0 0 2 2 2 0 Arfaptin-like domain DUF357 PF04010.13 gi|20092107|ref|NP_618182.1| - 0.21 11.7 2.8 8.1 6.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF357) Imm30 PF15565.6 gi|20092107|ref|NP_618182.1| - 0.4 10.8 2.9 1.5 9.0 0.2 2.9 2 1 1 3 3 3 0 Immunity protein 30 YfdX PF10938.8 gi|20092107|ref|NP_618182.1| - 1.1 9.1 4.2 7.6 6.5 0.1 2.9 2 1 0 2 2 2 0 YfdX protein MIT PF04212.18 gi|20092107|ref|NP_618182.1| - 1.7 8.7 19.2 2.2 8.4 1.3 4.7 4 1 1 5 5 5 0 MIT (microtubule interacting and transport) domain TPR_10 PF13374.6 gi|20092108|ref|NP_618183.1| - 1.6e-137 444.2 36.1 5.6e-11 42.0 0.0 14.1 14 1 0 14 14 14 12 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20092108|ref|NP_618183.1| - 6.9e-90 295.4 47.2 2.1e-13 50.3 1.1 13.6 8 4 5 13 13 13 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092108|ref|NP_618183.1| - 3.4e-64 207.7 57.5 0.00022 21.2 0.4 15.5 14 1 0 14 14 14 12 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092108|ref|NP_618183.1| - 4.7e-64 207.4 66.3 0.00015 21.6 0.1 18.7 14 11 2 16 16 16 15 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092108|ref|NP_618183.1| - 8.4e-63 203.9 50.4 0.00016 21.4 0.0 19.6 14 8 0 14 14 13 12 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092108|ref|NP_618183.1| - 4.8e-61 200.3 82.7 2.6e-05 23.8 0.3 21.2 15 8 8 23 23 23 20 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20092108|ref|NP_618183.1| - 1.6e-45 150.2 51.0 0.00013 22.1 0.5 16.9 15 3 0 15 15 13 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092108|ref|NP_618183.1| - 1e-40 134.9 13.2 0.2 12.5 0.0 14.7 14 1 1 15 15 14 8 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092108|ref|NP_618183.1| - 4.8e-32 108.5 29.7 0.092 13.4 0.0 13.8 14 0 0 14 14 13 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092108|ref|NP_618183.1| - 2.4e-31 107.1 69.5 0.0045 16.6 0.6 16.2 11 2 4 15 15 15 13 TPR repeat TPR_16 PF13432.6 gi|20092108|ref|NP_618183.1| - 2.3e-30 104.9 17.7 0.043 14.5 0.0 14.1 4 2 8 12 12 11 8 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092108|ref|NP_618183.1| - 9.5e-30 102.9 50.8 0.0021 18.5 1.3 15.3 2 1 12 14 14 14 11 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20092108|ref|NP_618183.1| - 4.7e-25 88.4 30.0 0.15 11.8 0.1 13.9 2 2 11 14 14 14 7 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|20092108|ref|NP_618183.1| - 1.1e-24 87.5 1.1 0.0027 17.1 0.1 7.6 1 1 8 10 10 10 9 MalT-like TPR region TOM20_plant PF06552.12 gi|20092108|ref|NP_618183.1| - 1.3e-19 70.7 33.3 0.18 11.5 0.2 12.7 2 2 9 11 11 11 7 Plant specific mitochondrial import receptor subunit TOM20 NARP1 PF12569.8 gi|20092108|ref|NP_618183.1| - 2.2e-19 69.8 64.0 0.057 12.3 0.2 12.8 2 1 11 13 13 13 11 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|20092108|ref|NP_618183.1| - 1.1e-18 67.0 60.2 0.99 9.5 0.3 12.8 12 0 0 12 12 12 11 Fis1 C-terminal tetratricopeptide repeat Matrilin_ccoil PF10393.9 gi|20092108|ref|NP_618183.1| - 1e-15 57.3 0.0 26 4.8 0.0 11.8 12 0 0 12 12 12 0 Trimeric coiled-coil oligomerisation domain of matrilin Cas_TM1802 PF09484.10 gi|20092108|ref|NP_618183.1| - 6.6e-14 51.6 23.9 0.12 11.1 0.1 9.8 2 1 7 10 10 10 5 CRISPR-associated protein TM1802 (cas_TM1802) ANAPC3 PF12895.7 gi|20092108|ref|NP_618183.1| - 4.7e-11 42.8 36.5 8.9 6.6 0.0 12.6 13 0 0 13 13 12 0 Anaphase-promoting complex, cyclosome, subunit 3 PTP2 PF17022.5 gi|20092108|ref|NP_618183.1| - 7.3e-10 38.8 18.4 1 8.9 0.1 11.4 2 1 11 13 13 12 1 Polar tube protein 2 from Microsporidia Alkyl_sulf_dimr PF14863.6 gi|20092108|ref|NP_618183.1| - 2.3e-08 34.6 19.4 6.4 7.2 0.1 10.7 1 1 10 11 11 11 0 Alkyl sulfatase dimerisation TPR_9 PF13371.6 gi|20092108|ref|NP_618183.1| - 3.5e-08 33.5 5.7 20 5.4 0.0 10.5 6 3 6 13 13 11 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|20092108|ref|NP_618183.1| - 8.7e-08 32.3 20.0 0.0018 18.4 0.7 7.6 2 1 5 9 9 9 4 Domain of Unknown Function (DUF3856) RPN6_N PF18055.1 gi|20092108|ref|NP_618183.1| - 1.6e-07 31.7 38.7 2.5 8.5 0.3 11.5 2 1 12 14 14 13 2 26S proteasome regulatory subunit RPN6 N-terminal domain Orthopox_F7 PF05813.12 gi|20092108|ref|NP_618183.1| - 2.1e-07 30.9 5.5 1.3e+02 2.8 0.0 10.5 11 1 0 11 11 11 0 Orthopoxvirus F7 protein SHNi-TPR PF10516.9 gi|20092108|ref|NP_618183.1| - 7.5e-07 28.5 53.7 8.5 5.9 0.1 14.0 15 0 0 15 15 14 0 SHNi-TPR DUF2225 PF09986.9 gi|20092108|ref|NP_618183.1| - 9e-07 28.8 29.4 0.08 12.7 2.8 6.5 1 1 8 9 9 9 5 Uncharacterized protein conserved in bacteria (DUF2225) TetR_C_19 PF17924.1 gi|20092108|ref|NP_618183.1| - 2.3e-06 28.2 23.0 46 4.6 0.1 12.0 13 1 0 13 13 12 0 Tetracyclin repressor-like, C-terminal domain Sin3a_C PF16879.5 gi|20092108|ref|NP_618183.1| - 1.9e-05 24.6 43.0 3.3 7.3 2.1 10.8 1 1 9 10 10 10 1 C-terminal domain of Sin3a protein Collagen_mid PF15984.5 gi|20092108|ref|NP_618183.1| - 2.5e-05 24.1 0.1 3.8 7.2 0.0 6.4 5 2 5 10 10 8 1 Bacterial collagen, middle region FIVAR PF07554.13 gi|20092108|ref|NP_618183.1| - 0.00012 22.8 43.2 8.9 7.2 0.1 12.2 3 2 10 13 13 12 0 FIVAR domain FliJ PF02050.16 gi|20092108|ref|NP_618183.1| - 0.00017 21.8 29.6 1 9.6 0.9 7.4 2 1 8 11 11 11 2 Flagellar FliJ protein MIT PF04212.18 gi|20092108|ref|NP_618183.1| - 0.0002 21.3 48.6 22 5.2 0.3 13.6 14 1 0 14 14 14 0 MIT (microtubule interacting and transport) domain TetR_C_23 PF17931.1 gi|20092108|ref|NP_618183.1| - 0.00078 19.6 5.1 16 5.6 0.1 6.4 4 2 3 7 7 7 0 Tetracyclin repressor-like, C-terminal domain DUF2508 PF10704.9 gi|20092108|ref|NP_618183.1| - 0.00099 19.2 52.0 16 5.7 0.2 12.6 13 0 0 13 13 13 0 Protein of unknown function (DUF2508) PPR PF01535.20 gi|20092108|ref|NP_618183.1| - 0.0037 17.4 41.8 46 4.6 0.0 14.3 12 4 2 14 14 14 0 PPR repeat DUF4810 PF16068.5 gi|20092108|ref|NP_618183.1| - 0.013 16.1 20.4 99 3.6 0.1 10.3 7 5 6 13 13 12 0 Domain of unknown function (DUF4810) DUF1940 PF09155.10 gi|20092108|ref|NP_618183.1| - 0.032 14.4 5.5 31 4.7 0.0 5.1 2 2 4 7 7 7 0 Domain of unknown function (DUF1940) LemA PF04011.12 gi|20092108|ref|NP_618183.1| - 0.22 11.4 30.0 33 4.3 0.6 9.5 4 2 5 10 10 10 0 LemA family YfdX PF10938.8 gi|20092108|ref|NP_618183.1| - 0.28 11.1 27.8 1.3 8.9 1.4 9.8 2 1 4 7 7 7 0 YfdX protein Glyco_hydro_57 PF03065.15 gi|20092108|ref|NP_618183.1| - 0.45 9.7 17.0 6.2e+03 -3.9 17.0 5.0 1 1 0 1 1 0 0 Glycosyl hydrolase family 57 RPN7 PF10602.9 gi|20092108|ref|NP_618183.1| - 1.1 9.0 33.2 16 5.2 0.1 10.0 3 1 7 10 10 9 0 26S proteasome subunit RPN7 Fungal_trans_2 PF11951.8 gi|20092108|ref|NP_618183.1| - 1.7 7.3 7.4 2.2 7.0 0.3 4.5 3 1 1 5 5 5 0 Fungal specific transcription factor domain Phage_TAC_8 PF10666.9 gi|20092108|ref|NP_618183.1| - 3.1 8.1 62.5 4.1 7.7 0.5 11.2 1 1 11 12 12 12 0 Phage tail assembly chaperone protein Gp14 ()A118 CN_hydrolase PF00795.22 gi|20092109|ref|NP_618184.1| - 2.4e-06 27.1 0.0 1.1e-05 24.9 0.0 2.1 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase zinc_ribbon_13 PF09855.9 gi|20092110|ref|NP_618185.1| - 1.7e-28 98.5 1.5 2e-28 98.3 1.5 1.1 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L37e PF01907.19 gi|20092110|ref|NP_618185.1| - 5.7e-05 23.2 1.0 0.29 11.3 0.5 2.1 2 0 0 2 2 2 2 Ribosomal protein L37e Zn_Tnp_IS1595 PF12760.7 gi|20092110|ref|NP_618185.1| - 0.00052 19.9 1.9 0.0026 17.7 2.2 1.8 1 1 1 2 2 2 1 Transposase zinc-ribbon domain Mcm10 PF09332.11 gi|20092110|ref|NP_618185.1| - 0.00075 19.0 0.9 0.0018 17.8 0.2 1.7 2 0 0 2 2 2 1 Mcm10 replication factor zf-C2H2_3 PF13878.6 gi|20092110|ref|NP_618185.1| - 0.00086 19.1 0.9 0.027 14.3 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO zinc_ribbon_10 PF10058.9 gi|20092110|ref|NP_618185.1| - 0.0072 16.0 0.6 0.24 11.2 0.1 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein CpXC PF14353.6 gi|20092110|ref|NP_618185.1| - 0.0076 16.3 0.3 2.8 8.0 0.1 2.0 2 0 0 2 2 2 2 CpXC protein TF_Zn_Ribbon PF08271.12 gi|20092110|ref|NP_618185.1| - 0.0079 15.7 0.3 0.21 11.1 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|20092110|ref|NP_618185.1| - 0.015 15.2 0.4 5.4 7.0 0.0 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Lar_restr_allev PF14354.6 gi|20092110|ref|NP_618185.1| - 0.018 15.4 0.4 0.029 14.8 0.4 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.6 gi|20092110|ref|NP_618185.1| - 0.019 15.1 0.1 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TFIIS_C PF01096.18 gi|20092110|ref|NP_618185.1| - 0.023 14.5 2.1 1.4 8.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Elf1 PF05129.13 gi|20092110|ref|NP_618185.1| - 0.027 14.5 1.7 0.086 12.9 1.7 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|20092110|ref|NP_618185.1| - 0.16 11.6 3.4 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|20092110|ref|NP_618185.1| - 0.27 11.2 4.2 0.29 11.1 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RRN7 PF11781.8 gi|20092110|ref|NP_618185.1| - 0.33 10.7 2.9 0.45 10.2 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_C2H2_10 PF18414.1 gi|20092110|ref|NP_618185.1| - 0.59 9.7 0.2 0.59 9.7 0.2 2.0 2 0 0 2 2 2 0 C2H2 type zinc-finger RNA_POL_M_15KD PF02150.16 gi|20092110|ref|NP_618185.1| - 0.89 9.5 6.6 6.4 6.8 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PALP PF00291.25 gi|20092112|ref|NP_618187.1| - 1.8e-39 136.0 0.0 2.1e-39 135.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.21 gi|20092113|ref|NP_618188.1| - 7.7e-16 58.2 0.0 2e-15 56.9 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|20092113|ref|NP_618188.1| - 3e-10 40.0 0.0 5.7e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HcyBio PF01837.16 gi|20092114|ref|NP_618189.1| - 2.1e-109 365.6 0.0 2.4e-109 365.4 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4 PF00037.27 gi|20092114|ref|NP_618189.1| - 0.00035 20.3 17.9 0.002 17.8 0.7 3.1 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20092114|ref|NP_618189.1| - 0.0016 18.4 14.5 0.083 13.0 5.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20092114|ref|NP_618189.1| - 0.0027 17.8 13.6 0.0055 16.8 13.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092114|ref|NP_618189.1| - 0.013 15.5 15.6 0.08 13.1 7.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092114|ref|NP_618189.1| - 0.026 15.1 15.0 0.07 13.7 15.0 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092114|ref|NP_618189.1| - 0.094 12.8 16.3 0.11 12.6 15.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20092114|ref|NP_618189.1| - 0.22 11.7 5.2 0.4 10.9 5.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092114|ref|NP_618189.1| - 0.6 10.3 15.0 0.52 10.5 1.2 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20092114|ref|NP_618189.1| - 0.81 10.4 15.5 1.4 9.6 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092114|ref|NP_618189.1| - 8.7 6.9 12.9 3.3 8.2 0.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain ThiS PF02597.20 gi|20092115|ref|NP_618190.1| - 9.1e-05 23.0 0.3 0.00012 22.7 0.3 1.2 1 0 0 1 1 1 1 ThiS family HTH_34 PF13601.6 gi|20092117|ref|NP_618192.1| - 0.011 15.9 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DSPc PF00782.20 gi|20092117|ref|NP_618192.1| - 0.02 14.7 0.7 0.13 12.1 0.1 2.0 1 1 1 2 2 2 0 Dual specificity phosphatase, catalytic domain TrmB PF01978.19 gi|20092117|ref|NP_618192.1| - 0.041 13.8 0.1 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Zn_dep_PLPC PF00882.18 gi|20092118|ref|NP_618193.1| - 0.097 12.7 0.2 0.11 12.5 0.2 1.1 1 0 0 1 1 1 0 Zinc dependent phospholipase C Cytochrom_C_asm PF01578.20 gi|20092119|ref|NP_618194.1| - 1.2e-27 97.1 24.0 1.2e-27 97.1 24.0 3.1 1 1 2 3 3 3 2 Cytochrome C assembly protein CcmF_C PF16327.5 gi|20092120|ref|NP_618195.1| - 8.9e-16 58.1 4.5 1.5e-15 57.3 4.5 1.3 1 0 0 1 1 1 1 Cytochrome c-type biogenesis protein CcmF C-terminal ResB PF05140.14 gi|20092120|ref|NP_618195.1| - 5.3e-09 35.3 1.6 5.8e-05 22.0 0.3 2.2 1 1 0 2 2 2 2 ResB-like family DUF2871 PF11070.8 gi|20092120|ref|NP_618195.1| - 0.031 14.6 0.6 0.031 14.6 0.6 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2871) DUF4131 PF13567.6 gi|20092120|ref|NP_618195.1| - 9.9 5.8 12.2 1.3 8.7 0.2 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) CarS-like PF01864.17 gi|20092121|ref|NP_618196.1| - 6.3e-46 156.5 0.8 7.1e-46 156.4 0.8 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|20092121|ref|NP_618196.1| - 3.4e-07 30.3 2.7 3.4e-07 30.3 2.7 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family DUF5518 PF17647.1 gi|20092121|ref|NP_618196.1| - 0.061 13.5 8.6 0.25 11.5 1.2 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5518) Pribosyltran PF00156.27 gi|20092122|ref|NP_618197.1| - 6.8e-12 45.2 1.6 1.1e-11 44.5 1.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|20092122|ref|NP_618197.1| - 0.031 13.7 0.0 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase GARS_A PF01071.19 gi|20092124|ref|NP_618199.1| - 1.4e-55 188.1 0.0 3.3e-55 186.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|20092124|ref|NP_618199.1| - 2.2e-26 92.4 0.3 4.7e-26 91.4 0.3 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|20092124|ref|NP_618199.1| - 1.2e-15 57.5 1.2 3e-15 56.3 0.4 2.1 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|20092124|ref|NP_618199.1| - 0.006 16.6 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain QRPTase_N PF02749.16 gi|20092124|ref|NP_618199.1| - 0.016 15.3 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain LpxI_N PF17930.1 gi|20092124|ref|NP_618199.1| - 0.028 14.3 0.0 0.15 11.9 0.1 2.2 2 0 0 2 2 2 0 LpxI N-terminal domain ATP-grasp_4 PF13535.6 gi|20092124|ref|NP_618199.1| - 0.031 13.9 0.0 0.079 12.6 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp domain GFO_IDH_MocA PF01408.22 gi|20092124|ref|NP_618199.1| - 0.041 14.7 0.1 0.16 12.8 0.0 2.1 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold GSH-S_ATP PF02955.16 gi|20092124|ref|NP_618199.1| - 0.083 12.3 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|20092124|ref|NP_618199.1| - 0.12 11.9 0.0 0.28 10.6 0.0 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain OTCace PF00185.24 gi|20092125|ref|NP_618200.1| - 1.4e-59 200.7 0.0 2e-59 200.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|20092125|ref|NP_618200.1| - 3.1e-53 179.8 0.1 5.4e-53 179.0 0.1 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HTH_23 PF13384.6 gi|20092126|ref|NP_618201.1| - 2.4e-06 27.2 0.0 4.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20092126|ref|NP_618201.1| - 3.4e-06 26.8 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20092126|ref|NP_618201.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20092126|ref|NP_618201.1| - 0.0019 17.9 0.4 0.0069 16.1 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20092126|ref|NP_618201.1| - 0.0071 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20092126|ref|NP_618201.1| - 0.0099 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|20092126|ref|NP_618201.1| - 0.025 13.6 0.1 0.045 12.7 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D Zn-ribbon_8 PF09723.10 gi|20092126|ref|NP_618201.1| - 0.07 13.3 1.9 1.4 9.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|20092126|ref|NP_618201.1| - 0.085 13.0 4.3 0.17 12.0 4.3 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2387 PF09526.10 gi|20092126|ref|NP_618201.1| - 0.14 12.3 0.6 0.24 11.6 0.6 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HTH_Tnp_1 PF01527.20 gi|20092126|ref|NP_618201.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Zn_Tnp_IS1 PF03811.13 gi|20092126|ref|NP_618201.1| - 0.18 11.5 8.7 0.3 10.8 8.7 1.4 1 0 0 1 1 1 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|20092126|ref|NP_618201.1| - 0.19 11.7 6.8 0.3 11.1 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DDE_Tnp_IS1 PF03400.13 gi|20092127|ref|NP_618202.1| - 4.4e-13 49.7 0.5 4.9e-13 49.6 0.5 1.0 1 0 0 1 1 1 1 IS1 transposase TERT_thumb PF17984.1 gi|20092127|ref|NP_618202.1| - 0.034 14.1 0.5 0.041 13.8 0.5 1.1 1 0 0 1 1 1 0 Telomerase reverse transcriptase thumb DNA binding domain DDE_Tnp_1_6 PF13751.6 gi|20092128|ref|NP_618203.1| - 2.6e-23 82.6 7.8 4e-18 65.8 0.2 3.2 3 0 0 3 3 3 2 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092128|ref|NP_618203.1| - 4.3e-19 69.0 2.9 2.1e-18 66.8 2.9 2.1 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20092128|ref|NP_618203.1| - 4.8e-15 55.3 0.0 1.2e-14 54.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|20092128|ref|NP_618203.1| - 0.019 15.3 0.2 1.7 9.0 0.0 3.3 3 1 1 4 4 4 0 Transposase DDE domain AhpC-TSA PF00578.21 gi|20092128|ref|NP_618203.1| - 0.066 13.1 0.4 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 AhpC/TSA family RE_XamI PF09572.10 gi|20092128|ref|NP_618203.1| - 0.09 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 XamI restriction endonuclease DUF1508 PF07411.12 gi|20092130|ref|NP_618205.1| - 1.3e-22 79.4 0.1 1.6e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) IF3_C PF00707.22 gi|20092130|ref|NP_618205.1| - 0.052 13.5 0.0 0.06 13.3 0.0 1.1 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain Radical_SAM PF04055.21 gi|20092131|ref|NP_618206.1| - 1.6e-16 61.2 0.0 3.7e-16 59.9 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|20092131|ref|NP_618206.1| - 1e-05 25.9 0.1 3.2e-05 24.4 0.1 1.9 1 1 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|20092131|ref|NP_618206.1| - 0.00041 20.6 0.0 0.00072 19.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|20092131|ref|NP_618206.1| - 0.0085 16.2 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TM2 PF05154.16 gi|20092135|ref|NP_618210.1| - 0.0022 18.3 6.9 0.0038 17.5 6.9 1.5 1 1 0 1 1 1 1 TM2 domain APG9 PF04109.16 gi|20092135|ref|NP_618210.1| - 0.082 11.9 1.7 0.087 11.8 1.7 1.0 1 0 0 1 1 1 0 Autophagy protein Apg9 GerA PF03323.13 gi|20092135|ref|NP_618210.1| - 1 7.7 3.3 1.1 7.6 3.3 1.0 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Flavin_Reduct PF01613.18 gi|20092136|ref|NP_618211.1| - 3.1e-18 66.3 0.0 4e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|20092136|ref|NP_618211.1| - 0.0048 16.7 0.0 0.01 15.6 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF447) UvrB_inter PF17757.1 gi|20092137|ref|NP_618212.1| - 1.1e-30 105.6 0.6 3.6e-30 104.0 0.6 2.0 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|20092137|ref|NP_618212.1| - 1.9e-22 78.8 1.1 1.9e-22 78.8 1.1 2.2 2 0 0 2 2 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|20092137|ref|NP_618212.1| - 2.3e-17 63.3 0.3 7.1e-17 61.8 0.3 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|20092137|ref|NP_618212.1| - 2.2e-14 53.8 0.3 3e-12 46.9 0.1 3.1 2 1 0 3 3 3 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|20092137|ref|NP_618212.1| - 2.7e-09 36.5 3.6 1.5e-08 34.1 3.6 2.4 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.29 gi|20092137|ref|NP_618212.1| - 0.00012 22.0 0.1 0.0056 16.5 0.0 3.2 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|20092137|ref|NP_618212.1| - 0.0022 17.7 0.0 0.02 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|20092137|ref|NP_618212.1| - 0.0096 16.0 0.0 0.11 12.6 0.0 2.6 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|20092137|ref|NP_618212.1| - 0.013 15.7 0.3 0.31 11.3 0.0 3.3 4 1 0 4 4 4 0 AAA domain SWI2_SNF2 PF18766.1 gi|20092137|ref|NP_618212.1| - 0.019 14.6 0.3 0.19 11.4 0.0 2.7 3 1 1 4 4 4 0 SWI2/SNF2 ATPase AAA_19 PF13245.6 gi|20092137|ref|NP_618212.1| - 0.029 14.7 0.8 7 7.0 0.1 2.7 3 0 0 3 3 2 0 AAA domain AAA PF00004.29 gi|20092137|ref|NP_618212.1| - 0.05 14.0 1.8 2.9 8.3 0.0 3.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Flavi_DEAD PF07652.14 gi|20092137|ref|NP_618212.1| - 0.071 13.1 0.2 0.51 10.3 0.1 2.5 3 0 0 3 3 3 0 Flavivirus DEAD domain AAA_16 PF13191.6 gi|20092137|ref|NP_618212.1| - 0.086 13.2 0.0 1.3 9.4 0.0 2.7 2 1 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|20092137|ref|NP_618212.1| - 0.1 11.5 0.3 0.46 9.3 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Tim44 PF04280.15 gi|20092137|ref|NP_618212.1| - 0.11 12.6 0.7 2.6 8.1 0.0 2.6 2 0 0 2 2 2 0 Tim44-like domain Ribonuc_red_lgN PF00317.21 gi|20092137|ref|NP_618212.1| - 0.12 12.3 0.0 0.95 9.5 0.0 2.5 2 1 0 2 2 2 0 Ribonucleotide reductase, all-alpha domain UvrC_HhH_N PF08459.11 gi|20092138|ref|NP_618213.1| - 4.4e-52 176.1 1.0 1e-51 174.9 0.0 1.9 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|20092138|ref|NP_618213.1| - 1e-09 38.5 0.0 3.2e-09 36.9 0.0 1.9 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.19 gi|20092138|ref|NP_618213.1| - 3.1e-08 33.1 4.6 9.5e-08 31.5 4.6 1.9 1 0 0 1 1 1 1 UvrB/uvrC motif PYC_OADA PF02436.18 gi|20092138|ref|NP_618213.1| - 0.0033 17.2 0.5 0.0057 16.4 0.5 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain DUF4110 PF13422.6 gi|20092138|ref|NP_618213.1| - 0.71 10.0 3.3 1.8 8.7 3.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) UvrA_DNA-bind PF17755.1 gi|20092139|ref|NP_618214.1| - 5.3e-31 107.2 0.1 1.1e-28 99.7 0.0 3.4 4 0 0 4 4 3 1 UvrA DNA-binding domain UvrA_inter PF17760.1 gi|20092139|ref|NP_618214.1| - 2.5e-30 104.8 0.1 3e-29 101.3 0.0 2.7 3 0 0 3 3 3 1 UvrA interaction domain ABC_tran PF00005.27 gi|20092139|ref|NP_618214.1| - 2.1e-20 73.6 1.0 1.3e-08 35.5 0.2 4.5 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|20092139|ref|NP_618214.1| - 7.4e-12 45.2 0.0 0.0053 16.2 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20092139|ref|NP_618214.1| - 9.4e-09 34.9 0.1 0.0061 16.3 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|20092139|ref|NP_618214.1| - 6e-08 33.2 1.2 0.038 14.4 0.0 3.7 3 1 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|20092139|ref|NP_618214.1| - 2.2e-06 28.0 0.7 0.1 12.9 0.0 4.1 4 0 0 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|20092139|ref|NP_618214.1| - 1.6e-05 24.9 0.0 0.45 10.6 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_21 PF13304.6 gi|20092139|ref|NP_618214.1| - 2.9e-05 24.0 10.6 0.49 10.2 0.0 4.6 5 0 0 5 5 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20092139|ref|NP_618214.1| - 4.5e-05 23.3 1.5 5.7 6.5 0.1 4.4 3 1 0 4 4 4 0 AAA ATPase domain Viral_helicase1 PF01443.18 gi|20092139|ref|NP_618214.1| - 5e-05 23.2 0.0 0.078 12.7 0.0 2.6 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 gi|20092139|ref|NP_618214.1| - 7.1e-05 22.8 0.1 0.29 11.0 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase DnaJ_CXXCXGXG PF00684.19 gi|20092139|ref|NP_618214.1| - 9.4e-05 22.7 7.0 0.019 15.3 0.6 3.7 3 1 0 3 3 3 1 DnaJ central domain AAA_25 PF13481.6 gi|20092139|ref|NP_618214.1| - 0.0001 22.0 0.0 0.35 10.4 0.0 3.0 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|20092139|ref|NP_618214.1| - 0.00011 21.6 0.1 0.15 11.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|20092139|ref|NP_618214.1| - 0.00012 22.6 0.1 0.33 11.5 0.0 3.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|20092139|ref|NP_618214.1| - 0.00015 21.4 0.2 0.06 12.9 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain BCA_ABC_TP_C PF12399.8 gi|20092139|ref|NP_618214.1| - 0.00027 20.8 6.6 0.019 14.9 0.6 2.7 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_33 PF13671.6 gi|20092139|ref|NP_618214.1| - 0.0003 21.0 0.0 1.3 9.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain ATPase PF06745.13 gi|20092139|ref|NP_618214.1| - 0.00048 19.6 0.1 0.31 10.4 0.0 2.6 2 0 0 2 2 2 1 KaiC APS_kinase PF01583.20 gi|20092139|ref|NP_618214.1| - 0.00081 19.3 0.1 1.2 9.0 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase T2SSE PF00437.20 gi|20092139|ref|NP_618214.1| - 0.00087 18.4 0.1 1.3 8.0 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_24 PF13479.6 gi|20092139|ref|NP_618214.1| - 0.0016 18.2 0.4 2.3 7.9 0.0 3.0 3 0 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|20092139|ref|NP_618214.1| - 0.0018 18.6 0.0 0.46 10.9 0.0 2.8 2 0 0 2 2 2 1 RNA helicase NACHT PF05729.12 gi|20092139|ref|NP_618214.1| - 0.004 17.1 0.0 2.1 8.2 0.0 2.4 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|20092139|ref|NP_618214.1| - 0.0046 16.9 0.1 1.1 9.1 0.0 2.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|20092139|ref|NP_618214.1| - 0.012 16.1 12.3 0.082 13.4 0.2 3.6 4 1 0 4 4 3 0 AAA domain AAA_30 PF13604.6 gi|20092139|ref|NP_618214.1| - 0.014 15.1 0.2 9.5 5.9 0.1 3.0 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 gi|20092139|ref|NP_618214.1| - 0.015 14.3 0.5 6.9 5.6 0.0 2.8 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PRK PF00485.18 gi|20092139|ref|NP_618214.1| - 0.04 13.7 0.2 8.3 6.1 0.0 2.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RNA12 PF10443.9 gi|20092139|ref|NP_618214.1| - 0.055 12.2 0.0 0.85 8.3 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein AAA_28 PF13521.6 gi|20092139|ref|NP_618214.1| - 0.071 13.4 0.1 7.8 6.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|20092139|ref|NP_618214.1| - 0.076 12.9 2.7 10 6.0 0.0 3.0 3 0 0 3 3 2 0 NTPase DAP3 PF10236.9 gi|20092139|ref|NP_618214.1| - 0.083 12.0 0.2 5.9 6.0 0.1 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NB-ARC PF00931.22 gi|20092139|ref|NP_618214.1| - 0.11 11.6 0.0 5.9 6.0 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|20092139|ref|NP_618214.1| - 0.18 11.9 0.4 22 5.2 0.0 3.1 3 0 0 3 3 2 0 50S ribosome-binding GTPase Anti-TRAP PF15777.5 gi|20092139|ref|NP_618214.1| - 1.3 9.0 10.9 2.1 8.4 0.6 4.0 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein Lar_restr_allev PF14354.6 gi|20092139|ref|NP_618214.1| - 2.9 8.3 5.6 26 5.3 0.1 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|20092139|ref|NP_618214.1| - 3.5 7.8 11.1 4.1 7.6 0.6 3.7 3 0 0 3 3 3 0 Zinc ribbon domain rve PF00665.26 gi|20092140|ref|NP_618215.1| - 6.9e-25 87.6 0.0 1.3e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20092140|ref|NP_618215.1| - 5.1e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20092140|ref|NP_618215.1| - 6.5e-05 22.9 0.1 0.0011 19.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|20092140|ref|NP_618215.1| - 0.0027 16.7 0.0 0.0053 15.8 0.0 1.4 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20092140|ref|NP_618215.1| - 0.0035 17.1 0.1 0.0088 15.8 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20092140|ref|NP_618215.1| - 0.0071 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|20092140|ref|NP_618215.1| - 0.013 15.2 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|20092140|ref|NP_618215.1| - 0.016 15.0 0.3 0.1 12.4 0.0 2.4 2 1 1 3 3 3 0 Homeodomain-like domain HTH_5 PF01022.20 gi|20092140|ref|NP_618215.1| - 0.017 15.0 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|20092140|ref|NP_618215.1| - 0.029 14.3 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|20092140|ref|NP_618215.1| - 0.034 13.9 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_1 PF13411.6 gi|20092140|ref|NP_618215.1| - 0.052 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_7 PF02796.15 gi|20092140|ref|NP_618215.1| - 0.056 13.5 0.2 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF746 PF05344.11 gi|20092140|ref|NP_618215.1| - 0.057 13.3 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) MetOD2 PF18548.1 gi|20092140|ref|NP_618215.1| - 0.061 13.4 0.0 5.8 7.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 HTH_36 PF13730.6 gi|20092140|ref|NP_618215.1| - 0.073 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|20092140|ref|NP_618215.1| - 0.11 12.6 0.2 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 gi|20092140|ref|NP_618215.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20092140|ref|NP_618215.1| - 0.13 11.9 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) IstB_IS21 PF01695.17 gi|20092141|ref|NP_618216.1| - 6.2e-66 221.5 0.0 1.1e-65 220.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20092141|ref|NP_618216.1| - 3.8e-05 23.6 0.0 7.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20092141|ref|NP_618216.1| - 8.9e-05 22.9 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|20092141|ref|NP_618216.1| - 0.00031 21.0 0.2 0.0043 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20092141|ref|NP_618216.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein RNA_helicase PF00910.22 gi|20092141|ref|NP_618216.1| - 0.0021 18.4 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RuvB_N PF05496.12 gi|20092141|ref|NP_618216.1| - 0.0035 17.1 0.0 0.0074 16.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|20092141|ref|NP_618216.1| - 0.017 15.4 0.2 6.6 7.0 0.0 3.0 1 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|20092141|ref|NP_618216.1| - 0.02 15.3 0.0 0.097 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20092141|ref|NP_618216.1| - 0.021 14.7 0.0 0.062 13.2 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|20092141|ref|NP_618216.1| - 0.026 15.0 1.2 0.26 11.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20092141|ref|NP_618216.1| - 0.043 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|20092141|ref|NP_618216.1| - 0.052 13.0 0.0 0.41 10.1 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|20092141|ref|NP_618216.1| - 0.1 13.1 0.7 0.27 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20092141|ref|NP_618216.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|20092141|ref|NP_618216.1| - 0.25 11.1 1.2 36 4.0 0.0 3.0 1 1 2 3 3 3 0 AAA domain Pentapeptide PF00805.22 gi|20092142|ref|NP_618217.1| - 5.6e-83 271.9 49.3 4.5e-14 51.8 1.6 7.6 1 1 7 8 8 8 8 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|20092142|ref|NP_618217.1| - 2.3e-52 175.0 0.0 4.2e-10 39.7 0.0 4.7 1 1 5 6 6 6 6 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|20092142|ref|NP_618217.1| - 1e-29 102.4 0.0 4.2e-06 26.8 0.0 6.4 1 1 5 6 6 6 6 Pentapeptide repeats (9 copies) DNA_ligase_OB PF03120.16 gi|20092142|ref|NP_618217.1| - 0.00038 20.3 1.2 25 4.8 0.2 5.9 1 1 4 5 5 5 1 NAD-dependent DNA ligase OB-fold domain OprD PF03573.13 gi|20092142|ref|NP_618217.1| - 0.16 10.9 10.1 2.2 7.2 0.4 3.1 1 1 1 3 3 3 0 outer membrane porin, OprD family DDE_Tnp_1 PF01609.21 gi|20092143|ref|NP_618218.1| - 1.8e-09 37.5 3.0 2.8e-09 36.9 3.0 1.3 1 1 0 1 1 1 1 Transposase DDE domain Endonuclease_NS PF01223.23 gi|20092144|ref|NP_618219.1| - 4.6e-55 186.9 0.1 6.2e-55 186.5 0.1 1.2 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease Trypsin_2 PF13365.6 gi|20092144|ref|NP_618219.1| - 2.7e-20 73.8 0.0 5e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|20092144|ref|NP_618219.1| - 0.0084 15.9 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 1 Trypsin Peptidase_S7 PF00949.21 gi|20092144|ref|NP_618219.1| - 0.032 14.0 0.0 0.096 12.5 0.0 1.7 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease Endonuclea_NS_2 PF13930.6 gi|20092144|ref|NP_618219.1| - 0.053 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 DNA/RNA non-specific endonuclease Peptidase_S39 PF02122.15 gi|20092144|ref|NP_618219.1| - 0.12 11.8 0.0 0.39 10.2 0.0 1.7 2 0 0 2 2 2 0 Peptidase S39 DUF3160 PF11369.8 gi|20092146|ref|NP_618221.1| - 7.6e-255 847.2 1.1 8.6e-255 847.1 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) Acid_phosphat_B PF03767.14 gi|20092146|ref|NP_618221.1| - 0.063 12.9 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF3160 PF11369.8 gi|20092148|ref|NP_618223.1| - 2e-239 796.3 1.4 2.4e-239 796.0 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) Toprim_C_rpt PF13368.6 gi|20092151|ref|NP_618226.1| - 0.18 11.8 1.7 8.2 6.5 0.1 2.9 3 0 0 3 3 3 0 Topoisomerase C-terminal repeat DUF4277 PF14104.6 gi|20092152|ref|NP_618227.1| - 3.1e-43 146.6 0.0 6.3e-43 145.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20092152|ref|NP_618227.1| - 1.7e-18 67.0 2.5 1.4e-17 64.0 2.5 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.11 gi|20092152|ref|NP_618227.1| - 0.0087 16.5 2.1 0.4 11.2 0.6 2.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1410) LRR_5 PF13306.6 gi|20092152|ref|NP_618227.1| - 0.14 12.1 1.2 5.8 6.9 0.3 2.4 2 0 0 2 2 2 0 BspA type Leucine rich repeat region (6 copies) Ntox15 PF15604.6 gi|20092152|ref|NP_618227.1| - 5.1 7.2 6.6 1.2 9.2 2.3 1.9 1 1 1 2 2 2 0 Novel toxin 15 DDE_Tnp_ISL3 PF01610.17 gi|20092154|ref|NP_618229.1| - 1.2e-05 25.1 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Transposase CAAP1 PF15335.6 gi|20092155|ref|NP_618230.1| - 0.14 12.7 0.7 0.48 11.0 0.1 2.2 3 0 0 3 3 3 0 Caspase activity and apoptosis inhibitor 1 HMGL-like PF00682.19 gi|20092156|ref|NP_618231.1| - 7.2e-79 265.1 2.6 1.1e-78 264.4 2.6 1.3 1 0 0 1 1 1 1 HMGL-like DUF1308 PF07000.11 gi|20092156|ref|NP_618231.1| - 0.038 13.9 0.5 0.13 12.2 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1308) Lipase_GDSL_2 PF13472.6 gi|20092156|ref|NP_618231.1| - 0.071 13.5 0.1 0.24 11.8 0.0 1.9 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family DUF3801 PF12687.7 gi|20092156|ref|NP_618231.1| - 0.26 11.3 1.3 0.95 9.5 1.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3801) NAD_kinase PF01513.21 gi|20092157|ref|NP_618232.1| - 2.3e-60 204.3 0.6 2.8e-60 204.0 0.6 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|20092157|ref|NP_618232.1| - 0.00022 20.8 0.0 0.00038 20.1 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain AIRC PF00731.20 gi|20092157|ref|NP_618232.1| - 0.073 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AIR carboxylase Inositol_P PF00459.25 gi|20092158|ref|NP_618233.1| - 3.8e-34 118.4 0.0 4.6e-34 118.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|20092158|ref|NP_618233.1| - 1e-05 25.1 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain FBPase_glpX PF03320.13 gi|20092158|ref|NP_618233.1| - 0.0058 15.5 0.0 0.0084 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Gp_dh_C PF02800.20 gi|20092159|ref|NP_618234.1| - 6.7e-29 100.5 0.1 9.8e-29 100.0 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|20092159|ref|NP_618234.1| - 2.8e-11 43.6 0.1 6.4e-11 42.4 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|20092159|ref|NP_618234.1| - 2.5e-07 31.0 0.1 1.4e-06 28.6 0.0 2.3 1 1 1 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|20092159|ref|NP_618234.1| - 5.3e-05 22.6 0.1 0.0038 16.6 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|20092159|ref|NP_618234.1| - 0.00073 19.8 0.0 0.0018 18.5 0.0 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|20092159|ref|NP_618234.1| - 0.0029 18.4 0.1 0.0068 17.2 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|20092159|ref|NP_618234.1| - 0.012 15.9 0.1 0.024 14.9 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain PglD_N PF17836.1 gi|20092159|ref|NP_618234.1| - 0.014 16.1 0.1 0.044 14.4 0.1 1.9 2 0 0 2 2 2 0 PglD N-terminal domain NAD_binding_3 PF03447.16 gi|20092159|ref|NP_618234.1| - 0.019 15.6 0.0 0.045 14.4 0.0 1.7 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20092159|ref|NP_618234.1| - 0.063 13.9 0.7 0.27 11.8 0.7 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|20092159|ref|NP_618234.1| - 0.14 11.8 1.3 4.1 6.9 0.6 2.8 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain PAS_3 PF08447.12 gi|20092160|ref|NP_618235.1| - 9.5e-39 131.6 1.7 4.2e-20 71.8 0.0 4.0 4 0 0 4 4 4 2 PAS fold HisKA_2 PF07568.12 gi|20092160|ref|NP_618235.1| - 2.8e-30 104.2 0.4 8.2e-30 102.7 0.4 1.9 1 0 0 1 1 1 1 Histidine kinase PAS PF00989.25 gi|20092160|ref|NP_618235.1| - 4.5e-17 62.1 0.2 0.00031 20.7 0.1 4.8 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|20092160|ref|NP_618235.1| - 4.9e-15 55.7 1.8 0.00049 20.3 0.0 4.5 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|20092160|ref|NP_618235.1| - 2.7e-12 46.9 0.1 2.9e-08 33.9 0.0 3.8 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|20092160|ref|NP_618235.1| - 1.2e-08 35.4 0.3 5.2e-08 33.4 0.3 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|20092160|ref|NP_618235.1| - 2.3e-05 24.3 0.0 6.8e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|20092160|ref|NP_618235.1| - 0.0093 16.6 0.3 0.025 15.3 0.3 1.8 1 1 0 1 1 1 1 HWE histidine kinase SPOB_a PF14689.6 gi|20092160|ref|NP_618235.1| - 0.019 14.7 0.0 0.42 10.4 0.0 2.6 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain PH_15 PF17339.2 gi|20092160|ref|NP_618235.1| - 0.027 14.4 1.7 1.7 8.6 0.2 2.8 2 0 0 2 2 2 0 PH domain Nit_Regul_Hom PF10126.9 gi|20092160|ref|NP_618235.1| - 0.067 13.2 0.0 0.44 10.6 0.0 2.4 1 0 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Methyltransf_25 PF13649.6 gi|20092161|ref|NP_618236.1| - 3.4e-11 43.7 0.0 6.1e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092161|ref|NP_618236.1| - 4e-09 37.0 0.0 7.8e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20092161|ref|NP_618236.1| - 3.9e-08 32.7 0.0 6.2e-08 32.0 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|20092161|ref|NP_618236.1| - 3.7e-07 29.6 0.1 8.7e-07 28.4 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 gi|20092161|ref|NP_618236.1| - 2e-06 27.7 0.0 2.6e-06 27.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092161|ref|NP_618236.1| - 1.9e-05 25.3 0.0 3.2e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|20092161|ref|NP_618236.1| - 2.1e-05 24.3 0.0 0.0041 16.8 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|20092161|ref|NP_618236.1| - 8.3e-05 22.4 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20092161|ref|NP_618236.1| - 0.00016 21.3 0.0 0.00025 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 gi|20092161|ref|NP_618236.1| - 0.00026 20.1 0.0 0.00037 19.6 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.18 gi|20092161|ref|NP_618236.1| - 0.00031 20.2 0.0 0.00046 19.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|20092161|ref|NP_618236.1| - 0.00062 19.5 0.0 0.00092 18.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|20092161|ref|NP_618236.1| - 0.00079 19.3 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|20092161|ref|NP_618236.1| - 0.00095 18.3 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|20092161|ref|NP_618236.1| - 0.0029 17.2 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Met_10 PF02475.16 gi|20092161|ref|NP_618236.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|20092161|ref|NP_618236.1| - 0.023 14.3 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|20092161|ref|NP_618236.1| - 0.032 14.1 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain CMAS PF02353.20 gi|20092161|ref|NP_618236.1| - 0.037 13.3 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|20092161|ref|NP_618236.1| - 0.071 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_PK PF05891.12 gi|20092161|ref|NP_618236.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase SAM_MT PF04445.13 gi|20092161|ref|NP_618236.1| - 0.21 11.0 0.1 0.5 9.8 0.0 1.6 2 0 0 2 2 2 0 Putative SAM-dependent methyltransferase DUF2259 PF10016.9 gi|20092162|ref|NP_618237.1| - 0.098 12.6 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) DUF916 PF06030.12 gi|20092162|ref|NP_618237.1| - 0.12 12.4 0.1 0.28 11.3 0.1 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF916) DUF5412 PF17428.2 gi|20092162|ref|NP_618237.1| - 3.6 7.5 4.8 0.71 9.7 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5412) SurA_N_3 PF13624.6 gi|20092163|ref|NP_618238.1| - 0.051 13.4 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 SurA N-terminal domain Pilin_N PF07790.11 gi|20092164|ref|NP_618239.1| - 0.32 11.9 6.9 0.8 10.7 6.4 2.0 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF772 PF05598.11 gi|20092166|ref|NP_618241.1| - 1.3e-15 57.2 0.0 2e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) IstB_IS21 PF01695.17 gi|20092167|ref|NP_618242.1| - 5.3e-67 225.0 0.0 8.5e-67 224.3 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20092167|ref|NP_618242.1| - 3.3e-05 23.8 0.0 6.6e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20092167|ref|NP_618242.1| - 9.4e-05 22.8 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|20092167|ref|NP_618242.1| - 0.00064 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.6 gi|20092167|ref|NP_618242.1| - 0.00076 19.8 0.1 0.0043 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|20092167|ref|NP_618242.1| - 0.002 18.5 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase RsgA_GTPase PF03193.16 gi|20092167|ref|NP_618242.1| - 0.0029 17.5 0.0 0.0049 16.8 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase RuvB_N PF05496.12 gi|20092167|ref|NP_618242.1| - 0.0071 16.1 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|20092167|ref|NP_618242.1| - 0.0081 16.6 0.0 0.037 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|20092167|ref|NP_618242.1| - 0.022 14.3 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|20092167|ref|NP_618242.1| - 0.027 14.7 0.0 5.7 7.2 0.0 2.6 1 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20092167|ref|NP_618242.1| - 0.035 14.5 1.5 0.26 11.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20092167|ref|NP_618242.1| - 0.053 13.0 0.0 0.099 12.1 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region KTI12 PF08433.10 gi|20092167|ref|NP_618242.1| - 0.094 12.2 0.0 0.41 10.1 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_11 PF13086.6 gi|20092167|ref|NP_618242.1| - 0.1 12.3 1.0 8.5 6.1 0.0 2.9 1 1 2 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|20092167|ref|NP_618242.1| - 0.13 12.8 0.6 0.27 11.8 0.1 2.1 2 1 0 2 2 2 0 AAA domain rve PF00665.26 gi|20092168|ref|NP_618243.1| - 1.2e-24 86.8 0.0 2.2e-24 85.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|20092168|ref|NP_618243.1| - 8.7e-05 22.2 0.0 0.00022 20.9 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20092168|ref|NP_618243.1| - 0.00013 21.9 0.2 0.0017 18.3 0.0 2.5 2 1 0 2 2 2 1 Winged helix-turn helix HTH_38 PF13936.6 gi|20092168|ref|NP_618243.1| - 0.014 15.1 0.1 0.034 13.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20092168|ref|NP_618243.1| - 0.018 14.7 0.0 0.046 13.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 TnsD PF15978.5 gi|20092168|ref|NP_618243.1| - 0.02 13.9 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D MerR PF00376.23 gi|20092168|ref|NP_618243.1| - 0.022 14.5 0.1 0.055 13.3 0.1 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_5 PF01022.20 gi|20092168|ref|NP_618243.1| - 0.023 14.5 0.0 0.73 9.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|20092168|ref|NP_618243.1| - 0.043 13.6 0.3 0.25 11.2 0.0 2.3 2 1 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 gi|20092168|ref|NP_618243.1| - 0.057 13.5 0.2 1.7 8.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|20092168|ref|NP_618243.1| - 0.086 12.8 0.1 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|20092168|ref|NP_618243.1| - 0.092 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.11 gi|20092168|ref|NP_618243.1| - 0.094 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_IclR PF09339.10 gi|20092168|ref|NP_618243.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MetOD2 PF18548.1 gi|20092168|ref|NP_618243.1| - 0.13 12.4 0.0 12 6.1 0.0 3.1 2 1 1 3 3 3 0 Metanogen output domain 2 DDE_Tnp_1_6 PF13751.6 gi|20092169|ref|NP_618244.1| - 2.2e-17 63.4 9.1 2.2e-17 63.4 9.1 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092169|ref|NP_618244.1| - 1.1e-09 38.3 3.4 2.3e-09 37.2 3.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF3437 PF11919.8 gi|20092169|ref|NP_618244.1| - 0.012 15.5 0.0 0.036 14.0 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) DDE_Tnp_4 PF13359.6 gi|20092169|ref|NP_618244.1| - 0.085 12.5 1.9 0.65 9.7 0.1 2.3 2 0 0 2 2 2 0 DDE superfamily endonuclease RuvC PF02075.17 gi|20092169|ref|NP_618244.1| - 0.09 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Crossover junction endodeoxyribonuclease RuvC Glyco_transf_7C PF02709.14 gi|20092170|ref|NP_618245.1| - 0.12 12.1 2.5 0.23 11.2 2.5 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Peripla_BP_2 PF01497.18 gi|20092171|ref|NP_618246.1| - 9.9e-22 77.7 0.0 1.5e-21 77.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF99 PF01949.16 gi|20092171|ref|NP_618246.1| - 0.051 13.0 0.0 0.087 12.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF99 TPP_enzyme_M PF00205.22 gi|20092171|ref|NP_618246.1| - 0.16 11.7 0.0 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ABC_tran PF00005.27 gi|20092172|ref|NP_618247.1| - 1.7e-31 109.6 0.0 2.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092172|ref|NP_618247.1| - 8.8e-10 38.9 0.5 6.6e-05 22.9 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20092172|ref|NP_618247.1| - 9.4e-06 25.6 1.7 0.0011 18.7 0.2 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|20092172|ref|NP_618247.1| - 0.00021 20.8 2.3 0.025 14.0 2.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20092172|ref|NP_618247.1| - 0.00023 20.8 0.0 0.00073 19.2 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20092172|ref|NP_618247.1| - 0.00033 21.2 0.6 0.00052 20.6 0.6 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|20092172|ref|NP_618247.1| - 0.00063 19.7 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092172|ref|NP_618247.1| - 0.0013 19.1 0.7 0.0053 17.0 0.7 1.8 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|20092172|ref|NP_618247.1| - 0.0036 17.2 0.4 0.043 13.7 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|20092172|ref|NP_618247.1| - 0.011 16.1 0.0 0.014 15.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|20092172|ref|NP_618247.1| - 0.011 15.9 0.1 0.11 12.7 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|20092172|ref|NP_618247.1| - 0.015 15.7 0.1 0.067 13.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|20092172|ref|NP_618247.1| - 0.019 14.2 0.9 0.11 11.7 0.7 2.2 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|20092172|ref|NP_618247.1| - 0.019 14.9 0.2 0.059 13.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|20092172|ref|NP_618247.1| - 0.022 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|20092172|ref|NP_618247.1| - 0.036 13.8 0.1 0.094 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|20092172|ref|NP_618247.1| - 0.039 12.6 0.0 3.5 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|20092172|ref|NP_618247.1| - 0.055 12.3 0.0 2.2 7.0 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|20092172|ref|NP_618247.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF1359 PF07097.11 gi|20092172|ref|NP_618247.1| - 0.073 13.3 0.9 0.21 11.9 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1359) ATPase_2 PF01637.18 gi|20092172|ref|NP_618247.1| - 0.08 12.8 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|20092172|ref|NP_618247.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|20092172|ref|NP_618247.1| - 0.13 12.8 0.1 0.33 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|20092173|ref|NP_618248.1| - 1.1e-90 303.9 36.6 1.3e-90 303.5 36.6 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20092173|ref|NP_618248.1| - 0.00047 19.7 17.7 0.00047 19.7 17.7 1.8 1 1 1 2 2 2 1 ABC 3 transport family SNARE PF05739.19 gi|20092173|ref|NP_618248.1| - 2.2 8.4 4.7 0.37 10.8 0.8 1.8 2 0 0 2 2 2 0 SNARE domain DUF89 PF01937.19 gi|20092174|ref|NP_618249.1| - 3.7e-57 193.9 0.1 4.1e-57 193.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 DUF5424 PF17462.2 gi|20092174|ref|NP_618249.1| - 0.083 12.8 1.0 2.6 8.0 0.2 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5424) OrfB_IS605 PF01385.19 gi|20092175|ref|NP_618250.1| - 2e-28 99.0 1.2 4.4e-28 97.9 1.2 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|20092175|ref|NP_618250.1| - 2.7e-23 81.6 0.3 5.8e-23 80.6 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|20092175|ref|NP_618250.1| - 3.1e-21 74.6 0.4 5.8e-21 73.7 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|20092175|ref|NP_618250.1| - 0.002 18.2 2.8 0.0032 17.6 1.3 2.0 2 0 0 2 2 2 1 Piccolo Zn-finger HypA PF01155.19 gi|20092175|ref|NP_618250.1| - 0.066 13.2 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|20092175|ref|NP_618250.1| - 0.08 13.0 0.7 0.14 12.2 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|20092175|ref|NP_618250.1| - 0.26 11.4 0.9 0.52 10.5 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.18 gi|20092175|ref|NP_618250.1| - 7.3 6.0 8.3 18 4.8 0.4 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Y1_Tnp PF01797.16 gi|20092176|ref|NP_618251.1| - 1.3e-21 76.9 1.7 1.5e-21 76.7 1.7 1.0 1 0 0 1 1 1 1 Transposase IS200 like Metalloenzyme PF01676.18 gi|20092179|ref|NP_618254.1| - 4.8e-11 42.5 0.0 8.1e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|20092179|ref|NP_618254.1| - 4.7e-06 26.2 0.0 8.8e-06 25.3 0.0 1.5 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.22 gi|20092179|ref|NP_618254.1| - 8.6e-06 25.6 0.0 1.6e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Cation_efflux PF01545.21 gi|20092180|ref|NP_618255.1| - 2.5e-45 154.6 13.8 3.2e-45 154.3 13.8 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|20092180|ref|NP_618255.1| - 5.2e-20 71.4 0.2 9.5e-20 70.5 0.2 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Acylphosphatase PF00708.18 gi|20092181|ref|NP_618256.1| - 2.6e-18 66.2 0.1 3e-18 66.0 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase DmpG_comm PF07836.11 gi|20092181|ref|NP_618256.1| - 0.0073 15.8 0.0 0.0098 15.4 0.0 1.3 1 0 0 1 1 1 1 DmpG-like communication domain PAS_4 PF08448.10 gi|20092182|ref|NP_618257.1| - 1.9e-71 237.3 0.0 8.9e-14 51.7 0.0 7.8 8 0 0 8 8 7 6 PAS fold PAS_3 PF08447.12 gi|20092182|ref|NP_618257.1| - 4.2e-65 216.0 2.0 4.6e-21 74.9 0.0 8.3 8 0 0 8 8 7 7 PAS fold PAS_9 PF13426.7 gi|20092182|ref|NP_618257.1| - 2.2e-64 214.2 1.0 1.5e-13 50.9 0.0 8.4 8 0 0 8 8 8 6 PAS domain PAS PF00989.25 gi|20092182|ref|NP_618257.1| - 3e-56 188.3 0.0 7.1e-13 48.5 0.0 7.6 7 0 0 7 7 7 6 PAS fold MEDS PF14417.6 gi|20092182|ref|NP_618257.1| - 2e-50 170.8 0.0 6.6e-50 169.1 0.0 2.0 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_8 PF13188.7 gi|20092182|ref|NP_618257.1| - 3.1e-28 97.3 0.0 7.6e-05 22.6 0.0 6.2 6 0 0 6 6 5 5 PAS domain HATPase_c PF02518.26 gi|20092182|ref|NP_618257.1| - 1.1e-25 90.3 0.0 2.9e-25 89.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20092182|ref|NP_618257.1| - 6.7e-17 61.3 0.1 3.3e-16 59.1 0.1 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|20092182|ref|NP_618257.1| - 0.00021 21.1 0.0 0.00056 19.8 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 gi|20092182|ref|NP_618257.1| - 0.00054 20.1 1.3 8.1 6.6 0.0 5.7 7 1 0 7 7 5 0 PAS fold HATPase_c_3 PF13589.6 gi|20092182|ref|NP_618257.1| - 0.0019 18.0 0.1 0.015 15.1 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF5344 PF17279.2 gi|20092182|ref|NP_618257.1| - 0.0026 18.3 11.1 0.49 11.0 1.2 4.1 4 0 0 4 4 3 2 Family of unknown function (DUF5344) PAS_6 PF08348.11 gi|20092182|ref|NP_618257.1| - 0.0044 16.9 0.0 32 4.4 0.0 5.0 5 0 0 5 5 5 0 YheO-like PAS domain sCache_3_3 PF17202.4 gi|20092182|ref|NP_618257.1| - 0.013 15.9 0.0 6.9 7.1 0.0 3.9 4 0 0 4 4 3 0 Single cache domain 3 VRR_NUC PF08774.11 gi|20092182|ref|NP_618257.1| - 0.017 15.2 0.0 5.8 7.0 0.0 2.7 2 0 0 2 2 2 0 VRR-NUC domain Phage_GP20 PF06810.11 gi|20092182|ref|NP_618257.1| - 0.019 14.8 21.1 0.13 12.1 1.3 5.7 5 1 1 6 6 6 0 Phage minor structural protein GP20 DUF2959 PF11172.8 gi|20092182|ref|NP_618257.1| - 0.019 15.1 2.1 6.3 6.9 0.1 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2959) DUF5508 PF17621.2 gi|20092182|ref|NP_618257.1| - 0.034 13.3 0.1 8.3 5.5 0.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5508) Osmo_CC PF08946.10 gi|20092182|ref|NP_618257.1| - 0.058 13.7 10.2 0.67 10.2 1.4 3.0 2 0 0 2 2 2 0 Osmosensory transporter coiled coil VP9 PF09625.10 gi|20092182|ref|NP_618257.1| - 0.11 12.7 1.5 8.1 6.7 0.1 2.9 2 0 0 2 2 2 0 VP9 protein DUF4358 PF14270.6 gi|20092182|ref|NP_618257.1| - 0.14 12.4 1.8 21 5.5 0.3 3.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4358) OEP PF02321.18 gi|20092182|ref|NP_618257.1| - 0.2 11.4 8.3 4.1 7.2 2.2 2.9 2 0 0 2 2 2 0 Outer membrane efflux protein FliH PF02108.16 gi|20092182|ref|NP_618257.1| - 0.21 11.6 4.7 15 5.6 0.2 4.0 4 0 0 4 4 3 0 Flagellar assembly protein FliH DUF1664 PF07889.12 gi|20092182|ref|NP_618257.1| - 0.22 11.6 1.0 13 5.9 0.2 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) ISG65-75 PF11727.8 gi|20092182|ref|NP_618257.1| - 0.49 9.6 5.9 1.1 8.5 0.5 2.6 2 0 0 2 2 2 0 Invariant surface glycoprotein Spc24 PF08286.11 gi|20092182|ref|NP_618257.1| - 1.6 9.0 10.2 17 5.7 0.1 4.5 4 0 0 4 4 4 0 Spc24 subunit of Ndc80 Rab5-bind PF09311.11 gi|20092182|ref|NP_618257.1| - 2.1 7.7 7.8 8.2 5.7 1.4 2.7 2 0 0 2 2 2 0 Rabaptin-like protein Fzo_mitofusin PF04799.13 gi|20092182|ref|NP_618257.1| - 2.2 7.8 7.1 12 5.4 0.1 3.5 3 1 0 3 3 3 0 fzo-like conserved region YkyA PF10368.9 gi|20092182|ref|NP_618257.1| - 2.8 7.6 24.6 0.058 13.1 1.8 3.8 4 1 0 4 4 4 0 Putative cell-wall binding lipoprotein OmpH PF03938.14 gi|20092182|ref|NP_618257.1| - 3.2 8.1 18.6 2 8.8 0.7 5.4 5 0 0 5 5 5 0 Outer membrane protein (OmpH-like) sCache_2 PF17200.4 gi|20092182|ref|NP_618257.1| - 4.5 7.1 8.4 5.6 6.8 0.4 3.1 3 0 0 3 3 2 0 Single Cache domain 2 Disaggr_assoc PF08480.10 gi|20092183|ref|NP_618258.1| - 3.2e-89 297.8 11.7 3.2e-89 297.8 11.7 2.8 2 0 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.6 gi|20092183|ref|NP_618258.1| - 9.4e-12 45.1 50.7 1.1e-09 38.3 17.3 3.8 2 1 1 3 3 3 2 Right handed beta helix region Pentapeptide PF00805.22 gi|20092183|ref|NP_618258.1| - 1.6e-10 40.4 9.8 1.7e-06 27.6 4.9 2.4 1 1 1 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|20092183|ref|NP_618258.1| - 3.1e-08 33.7 4.9 1e-07 32.0 4.9 1.9 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|20092183|ref|NP_618258.1| - 0.0009 19.4 8.3 0.0079 16.3 8.8 2.2 1 1 0 1 1 1 1 Pentapeptide repeats (9 copies) zf-RING_6 PF14835.6 gi|20092183|ref|NP_618258.1| - 0.076 12.9 0.0 0.25 11.3 0.0 1.8 1 0 0 1 1 1 0 zf-RING of BARD1-type protein PAS_4 PF08448.10 gi|20092184|ref|NP_618259.1| - 6.3e-58 193.8 0.0 6.2e-23 81.1 0.0 5.5 5 0 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|20092184|ref|NP_618259.1| - 8.3e-45 151.0 0.4 3.5e-22 78.5 0.1 5.2 6 0 0 6 6 6 4 PAS fold PAS PF00989.25 gi|20092184|ref|NP_618259.1| - 1e-42 144.7 0.0 2.6e-15 56.4 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|20092184|ref|NP_618259.1| - 4.6e-39 132.9 0.4 1.4e-16 60.6 0.0 5.5 6 0 0 6 6 5 4 PAS domain HisKA_2 PF07568.12 gi|20092184|ref|NP_618259.1| - 7.5e-27 93.2 1.6 7.5e-27 93.2 1.6 3.3 4 0 0 4 4 4 1 Histidine kinase PAS_8 PF13188.7 gi|20092184|ref|NP_618259.1| - 2.8e-21 75.0 0.0 9.1e-07 28.8 0.0 4.4 4 0 0 4 4 4 3 PAS domain GAF_2 PF13185.6 gi|20092184|ref|NP_618259.1| - 1.5e-16 60.9 0.0 3.2e-15 56.6 0.0 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|20092184|ref|NP_618259.1| - 1.6e-07 31.8 0.0 1.7e-06 28.5 0.0 2.7 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|20092184|ref|NP_618259.1| - 0.00015 22.1 0.0 0.082 13.3 0.0 2.8 2 1 0 2 2 2 1 GAF domain PAS_10 PF13596.6 gi|20092184|ref|NP_618259.1| - 0.00019 22.0 0.0 0.011 16.3 0.0 3.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|20092184|ref|NP_618259.1| - 0.0063 16.7 10.8 1.1 9.5 0.0 6.5 6 2 0 6 6 6 1 PAS fold GAF PF01590.26 gi|20092184|ref|NP_618259.1| - 0.0079 16.8 0.0 0.027 15.1 0.0 1.9 2 0 0 2 2 1 1 GAF domain MEKHLA PF08670.11 gi|20092184|ref|NP_618259.1| - 0.0083 16.0 0.0 0.098 12.6 0.0 2.5 1 1 0 2 2 2 1 MEKHLA domain HWE_HK PF07536.14 gi|20092184|ref|NP_618259.1| - 0.019 15.6 2.5 0.025 15.3 0.1 2.5 2 0 0 2 2 1 0 HWE histidine kinase Spidroin_N PF16763.5 gi|20092184|ref|NP_618259.1| - 0.058 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Major ampullate spidroin 1, spider silk protein 1, N-term DUF883 PF05957.13 gi|20092185|ref|NP_618260.1| - 0.033 14.8 0.1 1.6 9.4 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) AnfO_nitrog PF09582.10 gi|20092186|ref|NP_618261.1| - 5.6e-55 185.6 0.0 6.4e-55 185.4 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) Nitro_FeMo-Co PF02579.17 gi|20092186|ref|NP_618261.1| - 0.0041 17.4 0.1 0.011 16.1 0.1 1.7 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor ILVD_EDD PF00920.21 gi|20092187|ref|NP_618262.1| - 3.8e-219 728.6 0.4 4.3e-219 728.4 0.4 1.0 1 0 0 1 1 1 1 Dehydratase family DDE_Tnp_IS1 PF03400.13 gi|20092188|ref|NP_618263.1| - 8.3e-14 52.0 0.3 9.3e-14 51.9 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20092189|ref|NP_618264.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20092189|ref|NP_618264.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20092189|ref|NP_618264.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20092189|ref|NP_618264.1| - 0.002 17.8 0.1 0.0069 16.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20092189|ref|NP_618264.1| - 0.0065 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20092189|ref|NP_618264.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20092189|ref|NP_618264.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20092189|ref|NP_618264.1| - 0.02 13.9 0.1 0.036 13.0 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20092189|ref|NP_618264.1| - 0.043 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20092189|ref|NP_618264.1| - 0.057 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092189|ref|NP_618264.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20092189|ref|NP_618264.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20092189|ref|NP_618264.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin DUF2795 PF11387.8 gi|20092190|ref|NP_618265.1| - 2e-13 50.3 0.2 1.6e-12 47.4 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2795) Peptidase_C69 PF03577.15 gi|20092191|ref|NP_618266.1| - 1.6e-49 169.0 0.3 1.7e-48 165.5 0.3 2.0 1 1 0 1 1 1 1 Peptidase family C69 MarR_2 PF12802.7 gi|20092192|ref|NP_618267.1| - 3.8e-05 23.5 0.0 5.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|20092192|ref|NP_618267.1| - 0.00034 20.3 0.0 0.00047 19.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|20092192|ref|NP_618267.1| - 0.00036 20.0 0.1 0.00077 19.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20092192|ref|NP_618267.1| - 0.0022 17.9 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|20092192|ref|NP_618267.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|20092192|ref|NP_618267.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TBPIP PF07106.13 gi|20092192|ref|NP_618267.1| - 0.014 15.3 0.0 0.063 13.2 0.0 2.0 1 1 1 2 2 2 0 TBPIP/Hop2 winged helix domain HTH_11 PF08279.12 gi|20092192|ref|NP_618267.1| - 0.014 15.3 0.0 0.02 14.9 0.0 1.2 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|20092192|ref|NP_618267.1| - 0.015 15.1 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|20092192|ref|NP_618267.1| - 0.034 14.5 0.0 0.046 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 gi|20092192|ref|NP_618267.1| - 0.048 13.7 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|20092192|ref|NP_618267.1| - 0.052 14.1 0.0 0.082 13.5 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage replication protein O Cullin PF00888.22 gi|20092192|ref|NP_618267.1| - 0.089 11.4 0.0 0.1 11.2 0.0 1.0 1 0 0 1 1 1 0 Cullin family Crp PF00325.20 gi|20092192|ref|NP_618267.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family AA_permease_2 PF13520.6 gi|20092193|ref|NP_618268.1| - 1.1e-44 152.9 49.5 1.4e-44 152.6 49.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|20092193|ref|NP_618268.1| - 7.6e-29 100.6 47.8 1.4e-28 99.8 47.8 1.4 1 1 0 1 1 1 1 Amino acid permease DUF2569 PF10754.9 gi|20092194|ref|NP_618269.1| - 0.018 15.5 1.4 0.018 15.5 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) Phageshock_PspD PF09584.10 gi|20092194|ref|NP_618269.1| - 0.037 14.1 0.2 17 5.6 0.0 2.6 2 0 0 2 2 2 0 Phage shock protein PspD (Phageshock_PspD) Lactamase_B PF00753.27 gi|20092195|ref|NP_618270.1| - 4.4e-09 36.6 0.0 9.7e-09 35.5 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|20092195|ref|NP_618270.1| - 0.00023 21.4 0.0 0.0034 17.6 0.0 2.7 3 0 0 3 3 3 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|20092195|ref|NP_618270.1| - 0.00028 20.5 0.0 0.00049 19.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.7 gi|20092195|ref|NP_618270.1| - 0.0017 18.6 0.0 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Nitro_FeMo-Co PF02579.17 gi|20092195|ref|NP_618270.1| - 0.033 14.5 0.0 0.71 10.2 0.0 2.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Lactamase_B_3 PF13483.6 gi|20092195|ref|NP_618270.1| - 0.042 13.8 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HHH PF00633.23 gi|20092195|ref|NP_618270.1| - 0.085 12.8 0.3 0.34 10.9 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF3798 PF12683.7 gi|20092195|ref|NP_618270.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Gln-synt_C PF00120.24 gi|20092196|ref|NP_618271.1| - 3.6e-53 180.8 0.0 4.1e-52 177.3 0.0 2.0 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|20092196|ref|NP_618271.1| - 1.4e-12 47.2 0.0 2.8e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain YbjQ_1 PF01906.17 gi|20092197|ref|NP_618272.1| - 1.1e-37 128.9 7.3 1.2e-37 128.7 7.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|20092197|ref|NP_618272.1| - 0.022 15.1 0.2 0.033 14.5 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Pox_I1 PF03289.13 gi|20092197|ref|NP_618272.1| - 0.066 12.3 0.0 0.072 12.2 0.0 1.0 1 0 0 1 1 1 0 Poxvirus protein I1 SeleniumBinding PF11524.8 gi|20092197|ref|NP_618272.1| - 0.19 12.2 3.7 0.31 11.5 0.7 2.1 1 1 0 2 2 2 0 Selenium binding protein ATG22 PF11700.8 gi|20092198|ref|NP_618273.1| - 0.063 11.9 0.8 0.066 11.8 0.8 1.0 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like DUF443 PF04276.12 gi|20092198|ref|NP_618273.1| - 0.072 12.9 0.8 0.079 12.8 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF443) Coiled-coil_56 PF09813.9 gi|20092198|ref|NP_618273.1| - 2.9 8.0 5.9 6.9 6.8 0.2 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 56 DDE_Tnp_1 PF01609.21 gi|20092200|ref|NP_618275.1| - 0.0004 20.1 0.0 0.00043 20.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain CfAFP PF05264.11 gi|20092201|ref|NP_618276.1| - 0.039 13.9 0.8 0.07 13.1 0.8 1.3 1 0 0 1 1 1 0 Choristoneura fumiferana antifreeze protein (CfAFP) MIP-T3 PF10243.9 gi|20092201|ref|NP_618276.1| - 0.15 12.1 1.8 41 4.2 0.0 3.6 4 0 0 4 4 4 0 Microtubule-binding protein MIP-T3 CH-like domain Serpin PF00079.20 gi|20092202|ref|NP_618277.1| - 7.3e-119 397.4 3.3 8.4e-119 397.2 3.3 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DUF1724 PF08350.10 gi|20092203|ref|NP_618278.1| - 1.4e-22 79.6 0.1 2.6e-22 78.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20092203|ref|NP_618278.1| - 0.003 17.4 0.4 0.0053 16.6 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TPD52 PF04201.15 gi|20092203|ref|NP_618278.1| - 0.026 14.1 0.1 0.038 13.6 0.1 1.3 1 0 0 1 1 1 0 Tumour protein D52 family HTH_11 PF08279.12 gi|20092203|ref|NP_618278.1| - 0.1 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF1670 PF07900.11 gi|20092205|ref|NP_618280.1| - 7.3e-93 309.9 4.0 8.5e-93 309.7 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20092205|ref|NP_618280.1| - 1.2e-09 37.7 0.3 0.0024 17.6 0.0 3.2 2 1 1 3 3 3 2 Homeodomain-like domain HTH_29 PF13551.6 gi|20092205|ref|NP_618280.1| - 2.7e-06 27.3 0.0 0.36 10.9 0.0 3.3 3 0 0 3 3 3 3 Winged helix-turn helix HTH_24 PF13412.6 gi|20092205|ref|NP_618280.1| - 4.5e-05 22.9 0.0 2 8.0 0.0 3.4 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|20092205|ref|NP_618280.1| - 0.00025 20.8 0.1 0.21 11.5 0.0 2.9 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|20092205|ref|NP_618280.1| - 0.00083 19.0 0.3 0.93 9.2 0.0 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|20092205|ref|NP_618280.1| - 0.0028 17.7 0.8 0.4 10.8 0.0 3.2 2 1 1 3 3 3 1 Helix-turn-helix TPP_enzyme_M_2 PF16582.5 gi|20092205|ref|NP_618280.1| - 0.0086 15.8 0.1 0.083 12.6 0.0 2.1 2 0 0 2 2 2 1 Middle domain of thiamine pyrophosphate Sigma70_r4 PF04545.16 gi|20092205|ref|NP_618280.1| - 0.014 14.9 0.5 2.7 7.6 0.3 2.7 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|20092205|ref|NP_618280.1| - 0.072 13.1 0.3 13 5.8 0.1 3.0 3 0 0 3 3 3 0 HTH domain HTH_7 PF02796.15 gi|20092205|ref|NP_618280.1| - 0.076 13.1 0.4 4.7 7.4 0.0 2.7 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|20092205|ref|NP_618280.1| - 0.094 12.9 0.7 19 5.6 0.0 3.7 4 0 0 4 4 4 0 Helix-turn-helix domain DUF1670 PF07900.11 gi|20092206|ref|NP_618281.1| - 6.4e-86 287.2 0.2 7.9e-86 287.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20092206|ref|NP_618281.1| - 1.2e-08 34.5 1.0 0.0033 17.2 0.0 3.1 2 1 1 3 3 3 2 Homeodomain-like domain HTH_29 PF13551.6 gi|20092206|ref|NP_618281.1| - 8.9e-07 28.8 0.1 0.039 14.0 0.0 3.1 2 1 1 3 3 3 2 Winged helix-turn helix HTH_11 PF08279.12 gi|20092206|ref|NP_618281.1| - 2.8e-05 24.0 0.3 0.00034 20.5 0.0 2.6 2 1 1 3 3 3 1 HTH domain HTH_Crp_2 PF13545.6 gi|20092206|ref|NP_618281.1| - 0.00011 22.1 0.0 0.00064 19.6 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|20092206|ref|NP_618281.1| - 0.00014 21.9 1.3 0.77 9.9 0.1 3.1 3 1 0 3 3 3 2 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|20092206|ref|NP_618281.1| - 0.00015 21.4 0.0 0.00038 20.1 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GerE PF00196.19 gi|20092206|ref|NP_618281.1| - 0.00045 19.7 0.0 1.5 8.4 0.0 3.3 2 1 1 3 3 3 2 Bacterial regulatory proteins, luxR family Sigma70_ECF PF07638.11 gi|20092206|ref|NP_618281.1| - 0.0018 18.2 0.1 15 5.4 0.0 3.1 2 1 1 3 3 3 0 ECF sigma factor Sigma70_r4_2 PF08281.12 gi|20092206|ref|NP_618281.1| - 0.0018 17.9 0.8 3.3 7.5 0.0 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|20092206|ref|NP_618281.1| - 0.073 13.0 0.0 3.4 7.6 0.0 2.9 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_36 PF13730.6 gi|20092206|ref|NP_618281.1| - 0.096 12.7 0.0 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain PGF-CTERM PF18204.1 gi|20092207|ref|NP_618282.1| - 0.0056 16.6 0.2 0.0056 16.6 0.2 2.2 3 0 0 3 3 3 1 PGF-CTERM motif DUF4366 PF14283.6 gi|20092207|ref|NP_618282.1| - 0.031 14.3 0.5 0.82 9.7 0.5 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) Invasin_D3 PF09134.10 gi|20092208|ref|NP_618283.1| - 2.2e-05 24.7 3.7 0.00023 21.4 0.2 3.0 2 1 1 3 3 3 1 Invasin, domain 3 Big_1 PF02369.16 gi|20092208|ref|NP_618283.1| - 0.0024 17.8 0.8 0.049 13.6 0.0 3.0 2 1 1 3 3 3 1 Bacterial Ig-like domain (group 1) FlgD_ig PF13860.6 gi|20092208|ref|NP_618283.1| - 0.034 14.0 0.3 0.14 12.1 0.1 2.1 2 1 0 2 2 2 0 FlgD Ig-like domain MS_channel PF00924.18 gi|20092210|ref|NP_618285.1| - 1.9e-34 119.0 0.7 4.3e-34 117.9 0.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF1129 PF06570.11 gi|20092210|ref|NP_618285.1| - 0.16 11.4 1.3 0.24 10.8 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Endonuc_Holl PF10107.9 gi|20092212|ref|NP_618287.1| - 7.5e-66 220.9 0.6 9.7e-66 220.6 0.6 1.1 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase DUF3290 PF11694.8 gi|20092212|ref|NP_618287.1| - 0.022 14.7 0.1 0.035 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF4263 PF14082.6 gi|20092212|ref|NP_618287.1| - 0.025 14.8 0.0 0.033 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) NTPase_1 PF03266.15 gi|20092214|ref|NP_618289.1| - 2e-55 187.3 0.0 2.2e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|20092214|ref|NP_618289.1| - 7.6e-10 38.6 0.0 1e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) MeaB PF03308.16 gi|20092214|ref|NP_618289.1| - 0.0002 20.4 0.4 0.00034 19.7 0.4 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|20092214|ref|NP_618289.1| - 0.00031 21.0 0.1 0.00059 20.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|20092214|ref|NP_618289.1| - 0.0011 18.7 1.0 0.0025 17.6 1.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|20092214|ref|NP_618289.1| - 0.0014 19.2 0.0 0.0022 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092214|ref|NP_618289.1| - 0.0016 18.8 0.4 0.0027 18.1 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|20092214|ref|NP_618289.1| - 0.0029 18.0 0.2 0.0063 16.9 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|20092214|ref|NP_618289.1| - 0.0058 17.1 0.7 0.0089 16.5 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|20092214|ref|NP_618289.1| - 0.0073 16.0 0.2 0.018 14.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|20092214|ref|NP_618289.1| - 0.01 16.2 2.6 0.38 11.1 2.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|20092214|ref|NP_618289.1| - 0.023 14.7 0.3 0.91 9.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|20092214|ref|NP_618289.1| - 0.04 14.1 0.1 0.26 11.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|20092214|ref|NP_618289.1| - 0.042 13.8 0.1 0.084 12.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|20092214|ref|NP_618289.1| - 0.044 13.4 0.2 0.16 11.6 0.2 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|20092214|ref|NP_618289.1| - 0.045 14.0 0.7 0.067 13.4 0.6 1.6 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|20092214|ref|NP_618289.1| - 0.048 12.8 0.2 0.13 11.5 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF87 PF01935.17 gi|20092214|ref|NP_618289.1| - 0.057 13.5 0.2 0.12 12.5 0.2 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain CbiA PF01656.23 gi|20092214|ref|NP_618289.1| - 0.058 13.5 0.3 0.44 10.6 0.4 2.2 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|20092214|ref|NP_618289.1| - 0.06 13.4 0.4 0.11 12.6 0.4 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|20092214|ref|NP_618289.1| - 0.067 12.9 0.2 6.5 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein KTI12 PF08433.10 gi|20092214|ref|NP_618289.1| - 0.075 12.5 0.1 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ArsA_ATPase PF02374.15 gi|20092214|ref|NP_618289.1| - 0.08 12.1 0.2 0.12 11.5 0.2 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_14 PF13173.6 gi|20092214|ref|NP_618289.1| - 0.083 12.9 0.0 0.5 10.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|20092214|ref|NP_618289.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|20092214|ref|NP_618289.1| - 0.12 12.0 0.7 0.26 10.9 0.7 1.8 1 1 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|20092214|ref|NP_618289.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.6 1 1 0 1 1 1 0 Helicase Zeta_toxin PF06414.12 gi|20092214|ref|NP_618289.1| - 0.13 11.5 0.6 0.58 9.4 0.2 2.0 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.22 gi|20092214|ref|NP_618289.1| - 0.13 11.4 0.1 0.22 10.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ParA PF10609.9 gi|20092214|ref|NP_618289.1| - 0.16 11.4 0.3 0.24 10.8 0.3 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase ABC_transp_aux PF09822.9 gi|20092214|ref|NP_618289.1| - 0.22 10.9 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system MMR_HSR1 PF01926.23 gi|20092216|ref|NP_618291.1| - 1.6e-16 60.4 1.6 1.5e-12 47.6 0.1 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|20092216|ref|NP_618291.1| - 1.1e-09 38.0 2.5 0.00059 19.4 0.3 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|20092216|ref|NP_618291.1| - 2.3e-09 37.4 0.0 4.2e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 gi|20092216|ref|NP_618291.1| - 3.5e-06 26.7 1.5 0.00022 20.8 0.2 2.4 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|20092216|ref|NP_618291.1| - 0.0005 20.2 1.7 3.7 7.6 0.1 3.2 2 1 0 3 3 3 2 Dynamin family AIG1 PF04548.16 gi|20092216|ref|NP_618291.1| - 0.0011 18.4 0.0 0.0022 17.3 0.0 1.5 1 0 0 1 1 1 1 AIG1 family cobW PF02492.19 gi|20092216|ref|NP_618291.1| - 0.0019 17.8 0.4 0.0019 17.8 0.4 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|20092216|ref|NP_618291.1| - 0.0025 17.8 0.1 0.0049 16.9 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain ATP_bind_1 PF03029.17 gi|20092216|ref|NP_618291.1| - 0.098 12.4 0.2 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|20092216|ref|NP_618291.1| - 0.16 11.6 0.4 3.3 7.3 0.0 2.6 3 0 0 3 3 3 0 Ras family HATPase_c PF02518.26 gi|20092217|ref|NP_618292.1| - 8.2e-31 106.8 0.2 1.1e-29 103.1 0.1 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|20092217|ref|NP_618292.1| - 2.7e-25 88.5 0.2 9.9e-11 41.6 0.1 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|20092217|ref|NP_618292.1| - 3.4e-25 88.3 5.9 8.4e-14 51.7 0.8 4.0 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|20092217|ref|NP_618292.1| - 1.8e-22 79.6 0.0 6.9e-22 77.7 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|20092217|ref|NP_618292.1| - 9e-22 76.6 0.1 2.8e-08 33.6 0.0 3.7 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 gi|20092217|ref|NP_618292.1| - 1.2e-20 73.3 1.2 6.1e-20 71.0 0.0 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|20092217|ref|NP_618292.1| - 4.5e-15 55.9 0.0 0.00025 21.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|20092217|ref|NP_618292.1| - 2.2e-10 40.7 0.0 0.00052 20.2 0.0 3.6 3 0 0 3 3 3 2 PAS fold HATPase_c_5 PF14501.6 gi|20092217|ref|NP_618292.1| - 0.01 15.7 0.0 0.053 13.4 0.0 2.3 1 1 0 1 1 1 0 GHKL domain PAS_7 PF12860.7 gi|20092217|ref|NP_618292.1| - 0.019 15.1 0.8 7.9 6.7 0.0 3.9 3 1 0 3 3 3 0 PAS fold Frataxin_Cyay PF01491.16 gi|20092217|ref|NP_618292.1| - 0.042 13.9 0.1 0.18 11.9 0.1 2.2 1 0 0 1 1 1 0 Frataxin-like domain IFT81_CH PF18383.1 gi|20092217|ref|NP_618292.1| - 0.065 13.5 1.0 0.29 11.4 0.9 2.1 2 0 0 2 2 2 0 Intraflagellar transport 81 calponin homology domain MEKHLA PF08670.11 gi|20092217|ref|NP_618292.1| - 0.089 12.7 0.0 2.5 8.0 0.0 3.1 4 0 0 4 4 4 0 MEKHLA domain dCMP_cyt_deam_1 PF00383.23 gi|20092219|ref|NP_618294.1| - 2.1e-25 88.5 0.0 2.7e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|20092219|ref|NP_618294.1| - 1.4e-19 70.2 0.0 1.7e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|20092219|ref|NP_618294.1| - 0.025 14.7 0.1 0.039 14.1 0.1 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC3 PF18771.1 gi|20092219|ref|NP_618294.1| - 0.061 13.4 0.1 0.092 12.9 0.1 1.3 1 0 0 1 1 1 0 APOBEC3 PPDK_N PF01326.19 gi|20092220|ref|NP_618295.1| - 1.7e-114 382.5 0.0 2.4e-114 382.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|20092220|ref|NP_618295.1| - 3.1e-58 197.2 0.1 5.2e-58 196.5 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|20092220|ref|NP_618295.1| - 1.3e-25 88.8 0.6 4.5e-25 87.2 0.6 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain AlbA_2 PF04326.14 gi|20092222|ref|NP_618297.1| - 3.4e-21 75.8 0.0 5.7e-21 75.1 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain MarC PF01914.17 gi|20092223|ref|NP_618298.1| - 2.4e-57 193.6 14.9 2.7e-57 193.5 14.9 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 gi|20092223|ref|NP_618298.1| - 0.00011 22.0 11.2 0.00034 20.3 11.1 1.8 1 1 0 1 1 1 1 Integral membrane protein TerC family CobD_Cbib PF03186.13 gi|20092223|ref|NP_618298.1| - 0.068 12.4 0.2 0.068 12.4 0.2 1.9 2 0 0 2 2 2 0 CobD/Cbib protein DUF443 PF04276.12 gi|20092223|ref|NP_618298.1| - 0.35 10.6 10.9 0.12 12.1 7.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF443) DUF4870 PF09685.10 gi|20092225|ref|NP_618300.1| - 0.02 15.0 7.3 0.059 13.5 7.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4870) Ribosomal_S3Ae PF01015.18 gi|161484933|ref|NP_618303.2| - 7e-65 218.4 3.6 8.1e-65 218.2 3.6 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family TPR_12 PF13424.6 gi|20092230|ref|NP_618305.1| - 2.7e-30 104.5 32.9 0.00015 22.0 0.4 12.1 5 4 4 9 9 9 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092230|ref|NP_618305.1| - 1.4e-18 65.5 58.9 0.00019 21.4 0.1 15.3 14 2 2 16 16 16 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092230|ref|NP_618305.1| - 1.1e-17 63.3 13.1 0.00031 20.5 0.0 10.2 12 0 0 12 12 11 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092230|ref|NP_618305.1| - 3.3e-16 58.3 47.1 0.00095 18.9 0.0 13.7 14 1 0 14 14 13 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092230|ref|NP_618305.1| - 6.6e-16 57.1 53.9 0.0025 17.8 0.0 14.6 15 0 0 15 15 15 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092230|ref|NP_618305.1| - 7.8e-12 45.0 16.4 6.3 7.9 0.0 12.2 13 2 2 15 15 11 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092230|ref|NP_618305.1| - 5.3e-11 42.9 17.9 0.11 13.0 0.5 9.5 7 2 2 9 9 9 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092230|ref|NP_618305.1| - 1.5e-10 40.3 24.2 5.2 7.3 0.0 12.8 14 1 0 14 14 13 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20092230|ref|NP_618305.1| - 7.2e-10 38.6 9.2 2.1 8.9 0.0 10.1 11 0 0 11 11 9 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|20092230|ref|NP_618305.1| - 1.1e-07 31.7 11.7 0.082 12.7 0.1 7.2 3 2 2 5 5 5 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_16 PF13432.6 gi|20092230|ref|NP_618305.1| - 1e-05 26.0 11.0 0.52 11.0 0.0 7.8 7 2 1 8 8 7 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20092230|ref|NP_618305.1| - 1.3e-05 24.8 12.2 0.1 11.9 0.7 5.9 5 2 1 6 6 6 2 MalT-like TPR region TPR_6 PF13174.6 gi|20092230|ref|NP_618305.1| - 0.00012 22.4 33.4 6.1 7.7 0.1 13.0 14 2 0 14 14 14 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092230|ref|NP_618305.1| - 0.00038 20.1 23.5 0.66 9.7 0.9 8.3 8 1 1 9 9 9 2 TPR repeat AbiJ_NTD5 PF18865.1 gi|20092230|ref|NP_618305.1| - 0.0033 17.2 0.0 1.6 8.6 0.0 3.9 2 0 0 2 2 2 1 AbiJ N-terminal domain 5 TPR_4 PF07721.14 gi|20092230|ref|NP_618305.1| - 0.046 14.4 1.2 7.3 7.5 0.1 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat SPO22 PF08631.10 gi|20092230|ref|NP_618305.1| - 0.098 12.1 12.0 0.18 11.3 0.4 4.4 3 2 0 3 3 3 0 Meiosis protein SPO22/ZIP4 like ANAPC3 PF12895.7 gi|20092230|ref|NP_618305.1| - 0.12 12.6 12.2 0.68 10.2 0.4 5.7 6 0 0 6 6 5 0 Anaphase-promoting complex, cyclosome, subunit 3 TBPIP PF07106.13 gi|20092230|ref|NP_618305.1| - 0.12 12.3 1.4 0.68 9.9 0.3 2.8 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain MIT PF04212.18 gi|20092230|ref|NP_618305.1| - 0.14 12.3 0.1 0.14 12.3 0.1 6.8 7 0 0 7 7 7 0 MIT (microtubule interacting and transport) domain RPN7 PF10602.9 gi|20092230|ref|NP_618305.1| - 0.17 11.6 6.9 7.7 6.2 0.0 4.9 4 1 0 4 4 4 0 26S proteasome subunit RPN7 Lactamase_B PF00753.27 gi|20092231|ref|NP_618306.1| - 1.3e-12 48.1 0.1 2.5e-12 47.2 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20092231|ref|NP_618306.1| - 0.00092 18.8 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|20092231|ref|NP_618306.1| - 0.043 13.7 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain YusW PF14039.6 gi|20092232|ref|NP_618307.1| - 0.00057 20.4 4.9 0.024 15.1 1.2 2.1 1 1 1 2 2 2 2 YusW-like protein DUF538 PF04398.12 gi|20092232|ref|NP_618307.1| - 0.028 14.9 0.0 0.029 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF538 DUF4164 PF13747.6 gi|20092232|ref|NP_618307.1| - 0.21 11.9 4.0 2.3 8.6 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF3958 PF13125.6 gi|20092232|ref|NP_618307.1| - 0.37 11.0 6.0 0.61 10.3 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3958) ABC_tran_CTD PF16326.5 gi|20092232|ref|NP_618307.1| - 0.61 10.4 9.2 3.5 8.0 0.7 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain FliD_N PF02465.18 gi|20092232|ref|NP_618307.1| - 0.65 10.7 4.0 7.9 7.3 1.9 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus HicB_lk_antitox PF15919.5 gi|20092234|ref|NP_618309.1| - 4.1e-12 46.3 0.0 4.3e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|20092234|ref|NP_618309.1| - 2.3e-06 27.5 0.0 2.5e-06 27.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) HicB_lk_antitox PF15919.5 gi|20092235|ref|NP_618310.1| - 8.1e-06 25.9 0.0 9.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system PHD_like PF12910.7 gi|20092235|ref|NP_618310.1| - 0.00071 19.6 0.1 0.0014 18.7 0.1 1.4 1 1 0 1 1 1 1 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicA_toxin PF07927.12 gi|20092235|ref|NP_618310.1| - 0.006 16.6 0.1 0.01 15.8 0.1 1.4 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Semialdhyde_dh PF01118.24 gi|20092235|ref|NP_618310.1| - 0.017 15.6 0.0 0.027 14.9 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TPR_11 PF13414.6 gi|20092235|ref|NP_618310.1| - 0.064 12.9 0.4 0.11 12.2 0.4 1.3 1 0 0 1 1 1 0 TPR repeat LCM PF04072.14 gi|20092236|ref|NP_618311.1| - 2.2e-51 174.5 0.0 2.9e-51 174.1 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase HicB_lk_antitox PF15919.5 gi|20092237|ref|NP_618312.1| - 1e-09 38.6 0.0 1.1e-09 38.5 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|20092237|ref|NP_618312.1| - 0.00019 21.3 0.0 0.00019 21.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) PIN PF01850.21 gi|20092238|ref|NP_618313.1| - 2.1e-10 41.2 0.0 7.4e-10 39.4 0.0 1.7 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|20092238|ref|NP_618313.1| - 0.00032 21.2 0.5 0.023 15.2 0.1 2.2 1 1 1 2 2 2 2 PIN domain DUF5615 PF18480.1 gi|20092238|ref|NP_618313.1| - 0.002 17.8 0.0 0.004 16.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_3 PF13470.6 gi|20092238|ref|NP_618313.1| - 0.027 15.2 0.0 0.042 14.6 0.0 1.3 1 0 0 1 1 1 0 PIN domain DUF4325 PF14213.6 gi|20092239|ref|NP_618314.1| - 5.5e-14 51.6 0.1 8.5e-14 51.0 0.1 1.3 1 0 0 1 1 1 1 STAS-like domain of unknown function (DUF4325) LigD_N PF13298.6 gi|20092240|ref|NP_618315.1| - 1.8e-38 131.1 0.0 2.2e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) Rubrerythrin PF02915.17 gi|20092241|ref|NP_618316.1| - 6.2e-08 33.1 1.0 8.3e-08 32.7 1.0 1.2 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|20092241|ref|NP_618316.1| - 0.00024 20.9 0.1 0.0003 20.6 0.1 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.6 gi|20092241|ref|NP_618316.1| - 0.0017 18.5 0.1 0.0021 18.3 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2202 PF09968.9 gi|20092241|ref|NP_618316.1| - 0.004 17.0 0.5 0.0054 16.6 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DUF4142 PF13628.6 gi|20092241|ref|NP_618316.1| - 0.013 15.7 0.2 0.017 15.4 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) Coat_F PF07875.12 gi|20092241|ref|NP_618316.1| - 0.019 15.2 0.6 0.034 14.4 0.6 1.5 1 0 0 1 1 1 0 Coat F domain Lectin_like PF18560.1 gi|20092242|ref|NP_618317.1| - 1.8e-54 184.1 0.3 1.8e-54 184.1 0.3 2.7 3 0 0 3 3 3 1 Lectin like domain Peptidase_C1 PF00112.23 gi|20092242|ref|NP_618317.1| - 1.5e-27 97.1 0.8 4.1e-27 95.7 0.0 1.9 2 0 0 2 2 2 1 Papain family cysteine protease PKD PF00801.20 gi|20092242|ref|NP_618317.1| - 5.5e-07 29.3 1.9 5.5e-07 29.3 1.9 3.9 3 1 1 4 4 4 2 PKD domain Peptidase_C1_2 PF03051.15 gi|20092242|ref|NP_618317.1| - 4.2e-06 25.8 0.4 0.0068 15.2 0.1 2.3 2 0 0 2 2 2 2 Peptidase C1-like family BiPBP_C PF06832.12 gi|20092242|ref|NP_618317.1| - 0.04 13.9 0.0 0.15 12.1 0.0 1.9 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family PKD_3 PF16820.5 gi|20092242|ref|NP_618317.1| - 0.049 13.4 4.0 0.8 9.5 0.1 3.1 3 0 0 3 3 3 0 PKD-like domain Pcc1 PF09341.10 gi|20092243|ref|NP_618318.1| - 0.0022 18.1 0.0 0.0029 17.7 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 DHHA1 PF02272.19 gi|20092244|ref|NP_618319.1| - 6.5e-15 55.8 0.0 2.5e-14 53.9 0.0 2.0 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|20092244|ref|NP_618319.1| - 0.0015 18.7 0.1 0.0038 17.4 0.1 1.7 1 0 0 1 1 1 1 DHH family EIIA-man PF03610.16 gi|20092244|ref|NP_618319.1| - 0.041 14.1 0.8 0.45 10.8 0.1 2.7 3 0 0 3 3 3 0 PTS system fructose IIA component IstB_IS21 PF01695.17 gi|20092245|ref|NP_618320.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20092245|ref|NP_618320.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20092245|ref|NP_618320.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20092245|ref|NP_618320.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20092245|ref|NP_618320.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20092245|ref|NP_618320.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20092245|ref|NP_618320.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092245|ref|NP_618320.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20092245|ref|NP_618320.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20092245|ref|NP_618320.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20092245|ref|NP_618320.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20092245|ref|NP_618320.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20092245|ref|NP_618320.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20092245|ref|NP_618320.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20092245|ref|NP_618320.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20092245|ref|NP_618320.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20092245|ref|NP_618320.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20092245|ref|NP_618320.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20092245|ref|NP_618320.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20092246|ref|NP_618321.1| - 3.4e-24 85.3 0.0 6e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20092246|ref|NP_618321.1| - 1.4e-05 25.0 0.2 3.4e-05 23.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.6 gi|20092246|ref|NP_618321.1| - 9.5e-05 22.1 0.0 0.00021 21.0 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20092246|ref|NP_618321.1| - 9.9e-05 22.0 0.0 0.00039 20.1 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|20092246|ref|NP_618321.1| - 0.00016 21.3 0.2 0.00033 20.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20092246|ref|NP_618321.1| - 0.0029 17.6 0.0 0.0091 16.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix Terminase_5 PF06056.12 gi|20092246|ref|NP_618321.1| - 0.0065 16.3 0.0 0.058 13.3 0.0 2.3 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4 PF04545.16 gi|20092246|ref|NP_618321.1| - 0.01 15.3 0.2 0.055 13.0 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_Tc3_1 PF11427.8 gi|20092246|ref|NP_618321.1| - 0.012 15.5 0.0 0.042 13.7 0.0 1.9 1 0 0 1 1 1 0 Tc3 transposase HTH_3 PF01381.22 gi|20092246|ref|NP_618321.1| - 0.018 15.1 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|20092246|ref|NP_618321.1| - 0.063 13.0 0.1 0.18 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20092246|ref|NP_618321.1| - 0.092 12.6 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein NUMOD1 PF07453.13 gi|20092246|ref|NP_618321.1| - 0.13 12.5 0.0 5.5 7.4 0.0 2.6 2 0 0 2 2 2 0 NUMOD1 domain HTH_28 PF13518.6 gi|20092246|ref|NP_618321.1| - 0.15 12.2 0.0 0.44 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20092246|ref|NP_618321.1| - 0.2 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MS_channel PF00924.18 gi|20092248|ref|NP_618323.1| - 3.5e-27 95.3 7.7 1.5e-26 93.3 7.7 2.1 1 1 0 1 1 1 1 Mechanosensitive ion channel Phage_holin_5_2 PF16079.5 gi|20092248|ref|NP_618323.1| - 0.14 12.5 5.0 1.4 9.3 0.1 2.9 3 0 0 3 3 3 0 Phage holin family Hol44, in holin superfamily V AzlC PF03591.14 gi|20092249|ref|NP_618324.1| - 2.7e-42 144.4 9.2 2.7e-42 144.4 9.2 1.8 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.12 gi|20092250|ref|NP_618325.1| - 1.2e-20 73.5 7.0 1.3e-20 73.4 7.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) NIR_SIR PF01077.22 gi|20092251|ref|NP_618326.1| - 3.1e-35 121.0 0.1 4.2e-35 120.6 0.1 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|20092251|ref|NP_618326.1| - 9.1e-20 70.3 0.0 1.7e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|20092251|ref|NP_618326.1| - 8e-14 50.8 13.5 7.5e-07 28.7 2.2 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092251|ref|NP_618326.1| - 4.2e-10 40.1 24.0 1e-07 32.4 10.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092251|ref|NP_618326.1| - 1.2e-08 34.7 18.3 7.4e-05 22.6 2.4 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092251|ref|NP_618326.1| - 4.8e-07 29.8 11.0 4.8e-07 29.8 11.0 2.2 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092251|ref|NP_618326.1| - 5.1e-07 29.7 15.9 0.0011 19.1 4.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20092251|ref|NP_618326.1| - 8.6e-07 29.0 11.2 8.6e-07 29.0 11.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092251|ref|NP_618326.1| - 0.00016 21.5 10.8 0.0028 17.6 2.1 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092251|ref|NP_618326.1| - 0.00087 19.7 11.5 0.027 14.9 0.2 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20092251|ref|NP_618326.1| - 0.0034 17.8 12.9 0.021 15.3 1.7 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20092251|ref|NP_618326.1| - 0.023 15.4 0.4 0.023 15.4 0.4 4.4 4 3 1 5 5 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|20092251|ref|NP_618326.1| - 0.052 14.5 18.2 0.088 13.8 0.9 3.1 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|20092251|ref|NP_618326.1| - 0.06 14.3 3.8 0.06 14.3 3.8 4.0 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20092251|ref|NP_618326.1| - 0.071 13.3 8.3 0.17 12.1 8.3 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF561 PF04481.12 gi|20092251|ref|NP_618326.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Fer4_22 PF17179.4 gi|20092251|ref|NP_618326.1| - 2.1 9.2 12.9 3.6 8.5 2.3 2.9 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092251|ref|NP_618326.1| - 3.9 8.1 17.7 1.3 9.6 0.5 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|20092251|ref|NP_618326.1| - 6 7.0 6.7 2 8.6 0.8 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Bactofilin PF04519.13 gi|20092252|ref|NP_618327.1| - 6.5e-09 36.0 23.4 1.8e-05 25.0 6.5 2.2 1 1 2 3 3 3 3 Polymer-forming cytoskeletal FapA PF03961.13 gi|20092252|ref|NP_618327.1| - 1.7e-06 26.9 3.6 3e-06 26.1 3.6 1.4 1 0 0 1 1 1 1 Flagellar Assembly Protein A DUF2207 PF09972.9 gi|20092252|ref|NP_618327.1| - 0.29 9.9 0.0 0.29 9.9 0.0 2.9 1 1 1 3 3 3 0 Predicted membrane protein (DUF2207) Nitroreductase PF00881.24 gi|20092253|ref|NP_618328.1| - 4.8e-30 104.8 0.1 3.9e-16 59.6 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|20092253|ref|NP_618328.1| - 3.6e-10 39.8 0.0 0.00038 20.1 0.0 3.1 1 1 2 3 3 3 3 Putative TM nitroreductase DUF2197 PF09963.9 gi|20092253|ref|NP_618328.1| - 0.16 12.2 0.1 0.35 11.1 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) Hexapep PF00132.24 gi|20092254|ref|NP_618329.1| - 9.3e-08 31.5 13.0 7.6e-05 22.3 4.9 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) DUF728 PF05304.12 gi|20092254|ref|NP_618329.1| - 0.015 15.1 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF728) Hexapep_2 PF14602.6 gi|20092254|ref|NP_618329.1| - 0.027 14.2 12.4 0.97 9.2 0.6 2.7 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase Mrr_cat PF04471.12 gi|20092255|ref|NP_618330.1| - 1.2e-09 38.2 0.0 2.8e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease DUF3037 PF11236.8 gi|20092255|ref|NP_618330.1| - 0.053 13.9 0.5 0.26 11.7 0.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3037) Tho2 PF11262.8 gi|20092255|ref|NP_618330.1| - 0.094 11.9 3.5 0.11 11.7 2.0 1.8 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Zn_clus PF00172.18 gi|20092256|ref|NP_618331.1| - 0.35 11.0 0.2 0.35 11.0 0.2 2.1 2 1 0 2 2 2 0 Fungal Zn(2)-Cys(6) binuclear cluster domain RsgA_GTPase PF03193.16 gi|20092257|ref|NP_618332.1| - 9.1e-45 152.6 0.0 1.4e-44 151.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|20092257|ref|NP_618332.1| - 3.2e-09 36.8 0.0 5.5e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|20092257|ref|NP_618332.1| - 3.4e-08 34.1 0.0 5e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Dynamin_N PF00350.23 gi|20092257|ref|NP_618332.1| - 0.00011 22.3 0.8 0.016 15.3 0.5 2.4 1 1 1 2 2 2 1 Dynamin family Septin PF00735.18 gi|20092257|ref|NP_618332.1| - 0.00012 21.4 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Septin FeoB_N PF02421.18 gi|20092257|ref|NP_618332.1| - 0.00014 21.5 0.0 0.095 12.2 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_16 PF13191.6 gi|20092257|ref|NP_618332.1| - 0.00094 19.6 0.3 0.0035 17.7 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 gi|20092257|ref|NP_618332.1| - 0.00099 18.7 0.1 1.4 8.5 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|20092257|ref|NP_618332.1| - 0.0015 18.3 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AIG1 PF04548.16 gi|20092257|ref|NP_618332.1| - 0.0045 16.3 0.1 0.007 15.7 0.1 1.3 1 0 0 1 1 1 1 AIG1 family Roc PF08477.13 gi|20092257|ref|NP_618332.1| - 0.0046 17.2 0.1 0.011 15.9 0.1 1.7 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|20092257|ref|NP_618332.1| - 0.011 15.5 0.0 6.6 6.5 0.0 2.8 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|20092257|ref|NP_618332.1| - 0.032 13.8 0.1 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 Ras family MMR_HSR1_C PF08438.10 gi|20092257|ref|NP_618332.1| - 0.035 14.7 0.0 1.9 9.1 0.0 2.8 2 1 1 3 3 3 0 GTPase of unknown function C-terminal AAA_22 PF13401.6 gi|20092257|ref|NP_618332.1| - 0.037 14.3 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|20092257|ref|NP_618332.1| - 0.049 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|20092257|ref|NP_618332.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|20092257|ref|NP_618332.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF815 PF05673.13 gi|20092257|ref|NP_618332.1| - 0.08 12.1 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Guanylate_kin PF00625.21 gi|20092257|ref|NP_618332.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Guanylate kinase AAA_25 PF13481.6 gi|20092257|ref|NP_618332.1| - 0.13 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_N PF16745.5 gi|20092257|ref|NP_618332.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 RsgA N-terminal domain RNA_helicase PF00910.22 gi|20092257|ref|NP_618332.1| - 0.2 12.0 0.0 0.34 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|20092257|ref|NP_618332.1| - 0.26 11.8 2.3 0.87 10.1 2.3 1.8 1 1 0 1 1 1 0 AAA domain DUF362 PF04015.12 gi|20092258|ref|NP_618333.1| - 4e-45 154.6 0.0 4.8e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|20092258|ref|NP_618333.1| - 4.5e-16 57.9 17.8 7e-08 32.0 4.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092258|ref|NP_618333.1| - 5.9e-14 51.4 15.5 4.1e-07 29.8 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092258|ref|NP_618333.1| - 5.2e-13 49.4 33.3 3.5e-09 37.1 11.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092258|ref|NP_618333.1| - 2e-10 40.6 24.1 4.6e-08 33.1 13.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092258|ref|NP_618333.1| - 2.9e-09 37.7 8.0 0.00016 22.6 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20092258|ref|NP_618333.1| - 6.1e-09 35.9 10.6 1.7e-08 34.5 10.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092258|ref|NP_618333.1| - 8.2e-09 35.5 11.1 0.0001 22.4 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092258|ref|NP_618333.1| - 1e-08 34.7 14.2 0.00013 21.8 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20092258|ref|NP_618333.1| - 4.1e-08 33.6 19.0 0.00086 20.1 5.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20092258|ref|NP_618333.1| - 4.6e-06 26.7 14.0 0.0028 18.0 4.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20092258|ref|NP_618333.1| - 6.1e-05 23.8 8.4 0.005 17.6 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20092258|ref|NP_618333.1| - 0.00018 21.9 12.7 0.24 11.8 3.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092258|ref|NP_618333.1| - 0.00083 19.8 12.6 0.18 12.4 2.9 2.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Lar_N PF09861.9 gi|20092258|ref|NP_618333.1| - 0.00096 18.4 0.3 0.0014 17.9 0.3 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_13 PF13370.6 gi|20092258|ref|NP_618333.1| - 0.0011 19.5 13.3 0.18 12.3 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|20092258|ref|NP_618333.1| - 0.0015 18.7 12.2 0.017 15.3 11.5 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20092258|ref|NP_618333.1| - 0.0058 17.3 9.0 0.55 11.0 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain MinC_C PF03775.16 gi|20092258|ref|NP_618333.1| - 0.091 12.8 0.2 0.15 12.1 0.2 1.3 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain DUF498 PF04430.14 gi|20092259|ref|NP_618334.1| - 1.7e-10 41.0 0.0 1.9e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Inhibitor_I71 PF12628.7 gi|20092259|ref|NP_618334.1| - 0.059 13.2 0.2 0.065 13.1 0.2 1.1 1 0 0 1 1 1 0 Falstatin, cysteine peptidase inhibitor DUF3107 PF11305.8 gi|20092259|ref|NP_618334.1| - 0.11 12.8 0.4 0.2 12.0 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3107) Radical_SAM PF04055.21 gi|20092260|ref|NP_618335.1| - 6.3e-19 69.0 0.0 1.4e-18 67.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DZR PF12773.7 gi|20092260|ref|NP_618335.1| - 0.00035 20.5 0.1 0.00035 20.5 0.1 2.8 3 0 0 3 3 3 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|20092260|ref|NP_618335.1| - 0.016 14.6 7.7 0.45 10.0 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain GFA PF04828.14 gi|20092260|ref|NP_618335.1| - 0.017 15.5 1.6 5 7.5 0.0 3.7 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DNA_ligase_ZBD PF03119.16 gi|20092260|ref|NP_618335.1| - 0.03 14.4 1.9 4 7.6 0.1 3.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RNA_POL_M_15KD PF02150.16 gi|20092260|ref|NP_618335.1| - 0.037 13.9 4.3 4.1 7.4 0.0 3.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|20092260|ref|NP_618335.1| - 0.16 11.5 3.3 0.25 10.9 0.5 2.7 2 0 0 2 2 2 0 C2H2 type zinc-finger YhfH PF14149.6 gi|20092260|ref|NP_618335.1| - 0.21 11.6 4.8 0.83 9.7 0.2 3.2 3 0 0 3 3 3 0 YhfH-like protein zf_UBZ PF18439.1 gi|20092260|ref|NP_618335.1| - 0.34 10.6 4.0 1.9 8.2 0.1 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-IS66 PF13005.7 gi|20092260|ref|NP_618335.1| - 0.54 10.7 8.2 3.4 8.1 0.1 3.7 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF1610 PF07754.11 gi|20092260|ref|NP_618335.1| - 0.58 10.2 6.8 4.9 7.2 0.8 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C4_Topoisom PF01396.19 gi|20092260|ref|NP_618335.1| - 0.72 9.7 7.9 4.1 7.3 0.0 2.9 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|20092260|ref|NP_618335.1| - 0.89 9.4 14.9 0.54 10.0 0.2 3.8 4 0 0 4 4 4 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|20092260|ref|NP_618335.1| - 0.9 9.7 13.2 4 7.6 0.4 4.2 3 1 1 4 4 4 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|20092260|ref|NP_618335.1| - 1 8.9 5.9 4 7.0 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|20092260|ref|NP_618335.1| - 1.5 8.8 6.4 27 4.8 0.1 3.6 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ACC PF17848.1 gi|20092260|ref|NP_618335.1| - 7 6.8 10.9 9.7 6.4 0.1 4.0 5 0 0 5 5 5 0 Acetyl-coA carboxylase zinc finger domain CbiA PF01656.23 gi|20092261|ref|NP_618336.1| - 8.7e-12 45.2 0.0 1.3e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20092261|ref|NP_618336.1| - 4.3e-08 32.9 0.4 1.4e-07 31.2 0.4 2.1 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|20092261|ref|NP_618336.1| - 3.6e-07 29.9 0.0 0.00015 21.3 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|20092261|ref|NP_618336.1| - 5e-07 29.8 0.0 8.3e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|20092261|ref|NP_618336.1| - 2.4e-06 27.5 0.0 3.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.15 gi|20092261|ref|NP_618336.1| - 5.4e-06 25.8 0.3 1.1e-05 24.7 0.3 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 gi|20092261|ref|NP_618336.1| - 2.1e-05 24.3 0.1 0.00044 19.9 0.1 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain DUF87 PF01935.17 gi|20092261|ref|NP_618336.1| - 3.8e-05 23.9 0.1 7.8e-05 22.9 0.1 1.5 2 0 0 2 2 1 1 Helicase HerA, central domain KTI12 PF08433.10 gi|20092261|ref|NP_618336.1| - 0.00019 21.0 0.0 0.00032 20.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MipZ PF09140.11 gi|20092261|ref|NP_618336.1| - 0.00023 20.6 0.0 0.00082 18.7 0.0 1.8 2 0 0 2 2 2 1 ATPase MipZ Zeta_toxin PF06414.12 gi|20092261|ref|NP_618336.1| - 0.00026 20.3 0.1 0.00048 19.5 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin CLP1_P PF16575.5 gi|20092261|ref|NP_618336.1| - 0.00031 20.6 0.0 0.00098 19.0 0.0 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 gi|20092261|ref|NP_618336.1| - 0.00037 20.0 0.1 0.001 18.6 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|20092261|ref|NP_618336.1| - 0.00041 20.0 0.0 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|20092261|ref|NP_618336.1| - 0.00098 19.5 0.0 0.026 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|20092261|ref|NP_618336.1| - 0.0023 17.7 0.2 0.0057 16.4 0.1 1.7 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|20092261|ref|NP_618336.1| - 0.0029 17.7 0.1 0.84 9.7 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|20092261|ref|NP_618336.1| - 0.0031 18.1 0.0 0.0055 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|20092261|ref|NP_618336.1| - 0.0031 17.1 0.1 0.25 10.8 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain TrkA_N PF02254.18 gi|20092261|ref|NP_618336.1| - 0.0063 16.8 0.0 0.19 12.0 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain ATP_bind_1 PF03029.17 gi|20092261|ref|NP_618336.1| - 0.0071 16.2 0.1 0.031 14.1 0.1 2.0 3 0 0 3 3 2 1 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|20092261|ref|NP_618336.1| - 0.012 14.9 0.1 0.024 14.0 0.1 1.5 2 0 0 2 2 1 0 KaiC AAA_33 PF13671.6 gi|20092261|ref|NP_618336.1| - 0.015 15.4 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|20092261|ref|NP_618336.1| - 0.017 14.1 0.0 0.033 13.2 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|20092261|ref|NP_618336.1| - 0.017 15.6 0.0 0.029 14.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MobB PF03205.14 gi|20092261|ref|NP_618336.1| - 0.019 14.8 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.17 gi|20092261|ref|NP_618336.1| - 0.02 14.5 0.0 0.065 12.9 0.0 1.8 2 0 0 2 2 1 0 Thymidylate kinase RNA_helicase PF00910.22 gi|20092261|ref|NP_618336.1| - 0.03 14.7 0.0 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_26 PF13500.6 gi|20092261|ref|NP_618336.1| - 0.031 14.1 0.2 1.5 8.6 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20092261|ref|NP_618336.1| - 0.04 13.4 0.1 0.064 12.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|20092261|ref|NP_618336.1| - 0.055 13.2 0.0 0.099 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|20092261|ref|NP_618336.1| - 0.058 12.4 0.0 0.085 11.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|20092261|ref|NP_618336.1| - 0.067 12.9 0.1 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|20092261|ref|NP_618336.1| - 0.077 12.1 0.2 0.19 10.9 0.2 1.6 2 0 0 2 2 2 0 G-protein alpha subunit AAA_29 PF13555.6 gi|20092261|ref|NP_618336.1| - 0.084 12.6 0.2 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|20092261|ref|NP_618336.1| - 0.086 12.7 0.1 0.25 11.2 0.1 1.8 2 0 0 2 2 1 0 NTPase AAA_10 PF12846.7 gi|20092261|ref|NP_618336.1| - 0.088 11.7 0.2 0.57 9.0 0.1 2.2 2 1 1 3 3 3 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|20092261|ref|NP_618336.1| - 0.14 11.1 0.0 0.45 9.4 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.29 gi|20092261|ref|NP_618336.1| - 0.16 12.4 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) LpxK PF02606.14 gi|20092261|ref|NP_618336.1| - 0.2 10.7 0.1 0.36 9.9 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Peripla_BP_2 PF01497.18 gi|20092263|ref|NP_618338.1| - 1.1e-70 237.9 0.1 1.6e-70 237.4 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|20092264|ref|NP_618339.1| - 4.5e-89 298.5 32.9 5.4e-89 298.3 32.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|20092265|ref|NP_618340.1| - 1.3e-33 116.4 0.0 1.9e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092265|ref|NP_618340.1| - 9.7e-10 38.7 0.2 1.8e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092265|ref|NP_618340.1| - 2.6e-07 30.3 1.2 1.8e-06 27.6 1.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20092265|ref|NP_618340.1| - 1.4e-06 28.2 0.3 5.3e-06 26.4 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|20092265|ref|NP_618340.1| - 7.6e-06 26.6 0.1 2.2e-05 25.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|20092265|ref|NP_618340.1| - 0.0004 19.3 0.8 0.63 8.8 0.0 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|20092265|ref|NP_618340.1| - 0.00062 19.4 0.1 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20092265|ref|NP_618340.1| - 0.00064 19.7 0.1 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092265|ref|NP_618340.1| - 0.002 18.4 0.9 0.036 14.4 0.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092265|ref|NP_618340.1| - 0.003 18.0 0.1 0.0049 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|20092265|ref|NP_618340.1| - 0.0032 17.1 0.0 0.0096 15.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain HSM3_N PF18795.1 gi|20092265|ref|NP_618340.1| - 0.004 16.6 0.1 0.0084 15.6 0.1 1.5 1 1 0 1 1 1 1 DNA mismatch repair protein HSM3, N terminal domain AAA_30 PF13604.6 gi|20092265|ref|NP_618340.1| - 0.012 15.3 0.1 0.026 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|20092265|ref|NP_618340.1| - 0.019 14.2 2.6 0.19 10.9 2.6 2.0 1 1 0 1 1 1 0 NB-ARC domain Rad17 PF03215.15 gi|20092265|ref|NP_618340.1| - 0.02 14.8 0.3 0.041 13.8 0.1 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|20092265|ref|NP_618340.1| - 0.029 13.6 0.1 0.057 12.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 gi|20092265|ref|NP_618340.1| - 0.037 14.5 0.1 0.26 11.7 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|20092265|ref|NP_618340.1| - 0.045 13.9 0.1 0.5 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|20092265|ref|NP_618340.1| - 0.075 13.1 0.2 1.9 8.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20092265|ref|NP_618340.1| - 0.098 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|20092265|ref|NP_618340.1| - 0.1 12.7 0.4 0.19 11.8 0.4 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|20092265|ref|NP_618340.1| - 0.11 11.9 0.0 0.37 10.1 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|20092265|ref|NP_618340.1| - 0.11 11.1 0.0 3.9 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_11 PF08241.12 gi|20092266|ref|NP_618341.1| - 1.3e-17 64.3 0.0 2.2e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092266|ref|NP_618341.1| - 1.5e-16 60.9 0.0 2.7e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092266|ref|NP_618341.1| - 2.5e-15 56.6 0.0 3.8e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092266|ref|NP_618341.1| - 5.6e-12 45.8 0.0 7.8e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092266|ref|NP_618341.1| - 9.8e-11 42.3 0.0 1.8e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20092266|ref|NP_618341.1| - 1.7e-07 30.9 0.0 3.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|20092266|ref|NP_618341.1| - 1.6e-05 24.4 0.0 2.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|20092266|ref|NP_618341.1| - 2.5e-05 24.0 0.0 3e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|20092266|ref|NP_618341.1| - 7e-05 22.0 0.1 0.0001 21.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.14 gi|20092266|ref|NP_618341.1| - 7.3e-05 22.3 0.0 9.9e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|20092266|ref|NP_618341.1| - 0.0001 22.2 0.0 0.00026 20.8 0.0 1.7 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20092266|ref|NP_618341.1| - 0.00014 21.4 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.15 gi|20092266|ref|NP_618341.1| - 0.00047 19.5 0.0 0.0016 17.8 0.0 1.8 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 gi|20092266|ref|NP_618341.1| - 0.0011 18.9 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|20092266|ref|NP_618341.1| - 0.0032 17.6 0.0 0.007 16.5 0.0 1.6 2 1 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|20092266|ref|NP_618341.1| - 0.0039 17.2 0.0 0.0046 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|20092266|ref|NP_618341.1| - 0.0087 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_9 PF08003.11 gi|20092266|ref|NP_618341.1| - 0.043 12.7 0.0 0.066 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) tRNA_U5-meth_tr PF05958.11 gi|20092266|ref|NP_618341.1| - 0.043 12.8 0.0 0.062 12.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.9 gi|20092266|ref|NP_618341.1| - 0.065 13.0 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_4 PF02390.17 gi|20092266|ref|NP_618341.1| - 0.08 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase SBP_bac_5 PF00496.22 gi|20092267|ref|NP_618342.1| - 3.5e-93 312.6 1.4 4.3e-93 312.3 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_3 PF00497.20 gi|20092267|ref|NP_618342.1| - 0.014 14.9 0.3 0.3 10.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Pilus_CpaD PF09476.10 gi|20092267|ref|NP_618342.1| - 0.11 12.2 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) ABC_tran PF00005.27 gi|20092268|ref|NP_618343.1| - 2.6e-32 112.2 0.1 4.6e-32 111.4 0.1 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20092268|ref|NP_618343.1| - 6.9e-08 32.9 4.2 1.5e-07 31.9 4.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20092268|ref|NP_618343.1| - 2.7e-05 24.2 0.0 0.0081 16.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20092268|ref|NP_618343.1| - 0.0034 17.7 2.0 0.071 13.4 2.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|20092268|ref|NP_618343.1| - 0.0092 15.4 1.5 0.053 13.0 1.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|20092268|ref|NP_618343.1| - 0.015 14.0 1.5 0.057 12.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|20092268|ref|NP_618343.1| - 0.019 14.7 1.1 0.036 13.8 1.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|20092268|ref|NP_618343.1| - 0.026 14.9 0.2 0.042 14.2 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|20092268|ref|NP_618343.1| - 0.045 12.9 0.6 0.11 11.7 0.5 1.6 1 1 0 1 1 1 0 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|20092268|ref|NP_618343.1| - 0.1 12.5 1.1 0.22 11.4 0.2 1.8 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|20092269|ref|NP_618344.1| - 1e-22 81.1 0.0 1.4e-22 80.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20092269|ref|NP_618344.1| - 3.2e-05 23.5 0.3 0.00013 21.5 0.3 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20092269|ref|NP_618344.1| - 0.00013 21.9 1.6 0.11 12.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 gi|20092269|ref|NP_618344.1| - 0.0014 18.2 0.3 0.094 12.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20092269|ref|NP_618344.1| - 0.0016 18.7 0.2 0.027 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20092269|ref|NP_618344.1| - 0.0017 18.0 0.1 0.0035 17.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain oligo_HPY PF08352.12 gi|20092269|ref|NP_618344.1| - 0.0029 18.1 0.0 0.0054 17.2 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|20092269|ref|NP_618344.1| - 0.0097 16.3 0.1 0.015 15.7 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|20092269|ref|NP_618344.1| - 0.01 16.3 0.3 0.096 13.1 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|20092269|ref|NP_618344.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|20092269|ref|NP_618344.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|20092269|ref|NP_618344.1| - 0.14 12.0 0.8 4.9 7.0 0.1 2.2 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.22 gi|20092270|ref|NP_618345.1| - 4.5e-29 101.5 11.4 4.5e-29 101.5 11.4 2.3 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20092270|ref|NP_618345.1| - 1.9e-06 27.7 0.5 1.9e-06 27.7 0.5 3.3 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|20092271|ref|NP_618346.1| - 4.8e-43 147.1 6.1 4.8e-43 147.1 6.1 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2070 PF09843.9 gi|20092271|ref|NP_618346.1| - 0.029 12.7 4.3 0.036 12.4 4.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TOM13 PF08219.11 gi|20092271|ref|NP_618346.1| - 0.044 13.8 0.1 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 Outer membrane protein TOM13 7tm_1 PF00001.21 gi|20092271|ref|NP_618346.1| - 0.11 11.8 0.8 0.33 10.2 0.8 1.9 1 1 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) Renin_r PF07850.14 gi|20092271|ref|NP_618346.1| - 4.9 7.8 5.3 1.9 9.1 0.4 2.6 3 0 0 3 3 3 0 Renin receptor-like protein Methyltransf_11 PF08241.12 gi|20092272|ref|NP_618347.1| - 2.4e-24 85.8 0.0 3.9e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092272|ref|NP_618347.1| - 3.5e-23 82.1 0.0 5.4e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092272|ref|NP_618347.1| - 1.4e-19 70.4 0.0 1.9e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092272|ref|NP_618347.1| - 8e-15 55.1 0.0 1.1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092272|ref|NP_618347.1| - 3.4e-13 49.5 0.0 4.4e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20092272|ref|NP_618347.1| - 1.3e-12 48.3 0.0 2.2e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|20092272|ref|NP_618347.1| - 1e-06 27.6 0.0 1.3e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|20092272|ref|NP_618347.1| - 1.2e-05 24.9 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|20092272|ref|NP_618347.1| - 1.6e-05 24.5 0.0 2.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|20092272|ref|NP_618347.1| - 9e-05 22.2 0.0 0.00013 21.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|20092272|ref|NP_618347.1| - 0.006 16.6 0.0 0.012 15.6 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain DREV PF05219.12 gi|20092272|ref|NP_618347.1| - 0.0087 15.2 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_18 PF12847.7 gi|20092272|ref|NP_618347.1| - 0.016 15.2 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|20092272|ref|NP_618347.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MetW PF07021.12 gi|20092272|ref|NP_618347.1| - 0.019 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|20092272|ref|NP_618347.1| - 0.021 14.7 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase TehB PF03848.14 gi|20092272|ref|NP_618347.1| - 0.021 14.2 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB UPF0020 PF01170.18 gi|20092272|ref|NP_618347.1| - 0.059 13.0 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|20092272|ref|NP_618347.1| - 0.066 13.0 0.0 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.18 gi|20092272|ref|NP_618347.1| - 0.12 11.8 0.0 0.39 10.2 0.0 1.8 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain RrnaAD PF00398.20 gi|20092272|ref|NP_618347.1| - 0.18 10.9 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase SBP_bac_5 PF00496.22 gi|20092274|ref|NP_618349.1| - 3.3e-94 316.0 0.0 4.1e-94 315.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle YjcZ_2 PF09680.10 gi|20092274|ref|NP_618349.1| - 0.48 10.1 3.6 0.94 9.2 3.6 1.4 1 0 0 1 1 1 0 Family of unknown function BPD_transp_1 PF00528.22 gi|20092275|ref|NP_618350.1| - 2.8e-44 151.1 12.8 2.8e-44 151.1 12.8 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3693 PF12472.8 gi|20092275|ref|NP_618350.1| - 0.019 14.6 2.6 0.038 13.6 0.1 2.7 3 0 0 3 3 3 0 Phage related protein OppC_N PF12911.7 gi|20092275|ref|NP_618350.1| - 0.16 12.0 0.1 0.16 12.0 0.1 3.9 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|20092276|ref|NP_618351.1| - 6.1e-28 97.8 7.8 6.1e-28 97.8 7.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20092276|ref|NP_618351.1| - 9.8e-09 35.1 0.1 9.8e-09 35.1 0.1 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|20092277|ref|NP_618352.1| - 5e-24 85.4 0.0 7.3e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20092277|ref|NP_618352.1| - 8.9e-15 55.0 0.1 1.7e-14 54.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20092277|ref|NP_618352.1| - 0.00042 20.2 1.0 0.042 13.7 0.2 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20092277|ref|NP_618352.1| - 0.0011 19.2 0.5 0.0046 17.2 0.5 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|20092277|ref|NP_618352.1| - 0.0033 16.9 0.0 0.0052 16.2 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20092277|ref|NP_618352.1| - 0.011 15.5 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|20092277|ref|NP_618352.1| - 0.014 15.8 0.1 0.026 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|20092277|ref|NP_618352.1| - 0.015 15.3 0.1 0.033 14.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|20092277|ref|NP_618352.1| - 0.017 15.6 0.1 0.022 15.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|20092277|ref|NP_618352.1| - 0.058 13.8 0.0 0.099 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|20092277|ref|NP_618352.1| - 0.064 13.3 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|20092277|ref|NP_618352.1| - 0.071 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 gi|20092277|ref|NP_618352.1| - 0.074 12.8 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|20092277|ref|NP_618352.1| - 0.11 11.7 0.1 0.18 11.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain YidD PF01809.18 gi|20092277|ref|NP_618352.1| - 0.13 12.2 0.5 0.24 11.3 0.5 1.4 1 0 0 1 1 1 0 Putative membrane protein insertion efficiency factor NACHT PF05729.12 gi|20092277|ref|NP_618352.1| - 0.17 11.8 0.9 0.48 10.3 0.3 1.9 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 gi|20092278|ref|NP_618353.1| - 4.2e-31 108.3 0.0 5.6e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092278|ref|NP_618353.1| - 3.2e-08 33.8 0.2 0.00043 20.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092278|ref|NP_618353.1| - 1.5e-06 27.8 0.0 2.6e-06 27.0 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|20092278|ref|NP_618353.1| - 0.00015 22.1 0.8 0.003 17.8 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092278|ref|NP_618353.1| - 0.00036 21.0 1.1 0.0049 17.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|20092278|ref|NP_618353.1| - 0.0022 17.7 0.1 0.0054 16.4 0.1 1.6 1 1 0 1 1 1 1 P-loop containing region of AAA domain G-alpha PF00503.20 gi|20092278|ref|NP_618353.1| - 0.0037 16.5 0.0 0.0039 16.4 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|20092278|ref|NP_618353.1| - 0.014 15.3 0.1 0.033 14.1 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase TniB PF05621.11 gi|20092278|ref|NP_618353.1| - 0.017 14.5 0.1 1.2 8.5 0.0 2.5 2 1 1 3 3 3 0 Bacterial TniB protein NB-ARC PF00931.22 gi|20092278|ref|NP_618353.1| - 0.054 12.7 0.1 0.14 11.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.14 gi|20092278|ref|NP_618353.1| - 0.076 13.0 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|20092278|ref|NP_618353.1| - 0.13 12.0 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|20092278|ref|NP_618353.1| - 0.14 11.8 0.0 2.3 7.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|20092278|ref|NP_618353.1| - 0.16 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|20092278|ref|NP_618353.1| - 0.16 12.1 0.2 0.26 11.4 0.2 1.6 1 1 0 1 1 1 0 AAA domain Methyltransf_2 PF00891.18 gi|20092279|ref|NP_618354.1| - 1.1e-12 47.7 0.0 2.2e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|20092279|ref|NP_618354.1| - 9.4e-09 35.1 0.5 8.3e-07 28.9 0.1 2.4 2 0 0 2 2 2 1 Dimerisation domain PCMT PF01135.19 gi|20092279|ref|NP_618354.1| - 0.00062 19.6 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|20092279|ref|NP_618354.1| - 0.00062 20.5 0.0 0.0027 18.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092279|ref|NP_618354.1| - 0.0018 19.0 0.0 0.0035 18.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20092279|ref|NP_618354.1| - 0.0039 16.8 0.0 0.0067 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain HTH_IclR PF09339.10 gi|20092279|ref|NP_618354.1| - 0.0049 16.7 0.1 0.014 15.2 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain RACo_linker PF17650.1 gi|20092279|ref|NP_618354.1| - 0.056 13.3 0.1 3.6 7.5 0.3 2.4 2 0 0 2 2 2 0 RACo linker region PrmA PF06325.13 gi|20092279|ref|NP_618354.1| - 0.093 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|20092279|ref|NP_618354.1| - 0.17 11.2 0.0 0.49 9.8 0.0 1.6 2 0 0 2 2 2 0 Tellurite resistance protein TehB DUF900 PF05990.12 gi|20092279|ref|NP_618354.1| - 0.24 10.9 0.0 0.4 10.2 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Methyltransf_2 PF00891.18 gi|20092280|ref|NP_618355.1| - 3.6e-13 49.3 0.0 6.1e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|20092280|ref|NP_618355.1| - 6.8e-07 29.2 0.1 2.7e-05 24.1 0.0 2.4 2 0 0 2 2 2 1 Dimerisation domain PCMT PF01135.19 gi|20092280|ref|NP_618355.1| - 0.014 15.2 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|20092280|ref|NP_618355.1| - 0.035 14.9 0.0 0.083 13.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092280|ref|NP_618355.1| - 0.15 12.8 0.0 0.27 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Fe_dep_repress PF01325.19 gi|20092281|ref|NP_618356.1| - 1.3e-18 66.9 0.4 1.9e-18 66.4 0.4 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|20092281|ref|NP_618356.1| - 6.1e-17 61.5 0.6 1.1e-16 60.6 0.6 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_micro PF17007.5 gi|20092281|ref|NP_618356.1| - 9.6e-05 21.4 0.6 0.00014 20.8 0.5 1.5 1 1 0 1 1 1 1 HTH-like LexA_DNA_bind PF01726.16 gi|20092281|ref|NP_618356.1| - 0.00014 21.5 0.0 0.00026 20.7 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.6 gi|20092281|ref|NP_618356.1| - 0.00019 20.9 0.0 0.00033 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20092281|ref|NP_618356.1| - 0.00032 20.6 0.0 0.00067 19.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|20092281|ref|NP_618356.1| - 0.00088 19.1 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20092281|ref|NP_618356.1| - 0.0025 17.7 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|20092281|ref|NP_618356.1| - 0.0031 17.4 0.2 0.011 15.6 0.2 1.9 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|20092281|ref|NP_618356.1| - 0.0048 17.2 0.0 0.0089 16.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.6 gi|20092281|ref|NP_618356.1| - 0.0069 16.3 1.1 0.013 15.5 1.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Penicillinase_R PF03965.16 gi|20092281|ref|NP_618356.1| - 0.0074 16.6 0.0 0.018 15.4 0.0 1.7 1 1 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|20092281|ref|NP_618356.1| - 0.014 15.3 0.1 0.026 14.4 0.1 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|20092281|ref|NP_618356.1| - 0.016 15.6 0.0 0.064 13.7 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|20092281|ref|NP_618356.1| - 0.017 14.9 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|20092281|ref|NP_618356.1| - 0.035 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain YpjP PF14005.6 gi|20092281|ref|NP_618356.1| - 0.053 13.6 0.1 0.086 12.9 0.1 1.4 1 0 0 1 1 1 0 YpjP-like protein Mrr_N PF14338.6 gi|20092281|ref|NP_618356.1| - 0.054 13.6 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_DeoR PF08220.12 gi|20092281|ref|NP_618356.1| - 0.057 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain FeoC PF09012.10 gi|20092281|ref|NP_618356.1| - 0.078 13.1 0.0 0.23 11.5 0.0 1.8 1 1 1 2 2 2 0 FeoC like transcriptional regulator HTH_6 PF01418.17 gi|20092281|ref|NP_618356.1| - 0.086 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_34 PF13601.6 gi|20092281|ref|NP_618356.1| - 0.1 12.8 0.1 0.54 10.5 0.1 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain Glug PF07581.12 gi|20092283|ref|NP_618358.1| - 2.4e-130 416.7 462.6 2.4e-05 24.4 1.8 55.6 57 0 0 57 57 57 46 The GLUG motif CbiX PF01903.17 gi|20092283|ref|NP_618358.1| - 9e-113 370.1 9.1 5.5e-23 81.3 0.1 7.5 7 0 0 7 7 7 7 CbiX CbiK PF06180.11 gi|20092283|ref|NP_618358.1| - 1.7e-17 63.6 7.2 8.5e-07 28.6 0.3 3.9 3 1 0 3 3 3 3 Cobalt chelatase (CbiK) FmdE PF02663.14 gi|20092283|ref|NP_618358.1| - 0.00067 19.7 0.0 0.0072 16.4 0.0 2.8 3 0 0 3 3 3 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Phi-29_GP3 PF05435.11 gi|20092283|ref|NP_618358.1| - 0.089 12.3 0.1 24 4.3 0.0 2.8 3 0 0 3 3 3 0 Phi-29 DNA terminal protein GP3 MmoB_DmpM PF02406.17 gi|20092283|ref|NP_618358.1| - 0.11 12.8 0.7 32 4.8 0.0 3.3 3 0 0 3 3 3 0 MmoB/DmpM family SLATT_fungal PF18142.1 gi|20092283|ref|NP_618358.1| - 8.8 6.3 8.7 56 3.8 0.1 4.2 4 0 0 4 4 4 0 SMODS and SLOG-associating 2TM effector domain LCM PF04072.14 gi|20092284|ref|NP_618359.1| - 6.9e-15 55.5 0.2 1.5e-14 54.4 0.2 1.5 1 1 0 1 1 1 1 Leucine carboxyl methyltransferase HHH_3 PF12836.7 gi|20092285|ref|NP_618360.1| - 0.03 14.6 0.1 0.044 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif EB1 PF03271.17 gi|20092285|ref|NP_618360.1| - 0.16 12.2 0.2 0.34 11.2 0.2 1.5 1 0 0 1 1 1 0 EB1-like C-terminal motif FeoC PF09012.10 gi|20092286|ref|NP_618361.1| - 4.3e-21 74.7 8.4 4.1e-20 71.6 8.4 2.1 1 1 0 1 1 1 1 FeoC like transcriptional regulator Sigma70_r1_1 PF03979.14 gi|20092286|ref|NP_618361.1| - 0.0059 16.6 0.1 0.0079 16.2 0.1 1.2 1 0 0 1 1 1 1 Sigma-70 factor, region 1.1 MarR_2 PF12802.7 gi|20092286|ref|NP_618361.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF1495 PF07381.11 gi|20092286|ref|NP_618361.1| - 0.054 13.3 0.0 6.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) DUF2250 PF10007.9 gi|20092286|ref|NP_618361.1| - 0.07 13.2 0.3 0.2 11.8 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|20092286|ref|NP_618361.1| - 0.075 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 gi|20092286|ref|NP_618361.1| - 0.13 13.0 0.1 0.21 12.3 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal E2F_TDP PF02319.20 gi|20092286|ref|NP_618361.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain FeoB_N PF02421.18 gi|20092288|ref|NP_618363.1| - 4.3e-64 214.8 0.4 6.8e-64 214.1 0.4 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|20092288|ref|NP_618363.1| - 1.9e-45 153.7 13.9 8.7e-30 103.3 2.1 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 gi|20092288|ref|NP_618363.1| - 4.1e-22 77.6 0.3 4.1e-22 77.6 0.3 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|20092288|ref|NP_618363.1| - 1.9e-17 63.4 0.1 3.3e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|20092288|ref|NP_618363.1| - 3.1e-17 62.9 0.1 7.2e-17 61.7 0.1 1.7 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 gi|20092288|ref|NP_618363.1| - 0.00091 18.7 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|20092288|ref|NP_618363.1| - 0.048 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.23 gi|20092288|ref|NP_618363.1| - 0.1 12.6 0.1 18 5.4 0.0 2.3 2 0 0 2 2 2 0 Dynamin family FeoA PF04023.14 gi|20092289|ref|NP_618364.1| - 1.6e-18 66.7 0.1 1.8e-18 66.5 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|20092290|ref|NP_618365.1| - 1.9e-16 60.1 0.2 2.1e-16 59.9 0.2 1.0 1 0 0 1 1 1 1 FeoA domain MASE3 PF17159.4 gi|20092292|ref|NP_618367.1| - 1.1e-74 250.9 21.6 1.5e-74 250.4 21.6 1.2 1 0 0 1 1 1 1 Membrane-associated sensor domain HisKA_2 PF07568.12 gi|20092292|ref|NP_618367.1| - 4.3e-33 113.2 1.1 1.1e-32 112.0 1.1 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|20092292|ref|NP_618367.1| - 2e-20 72.9 0.0 1.5e-19 70.0 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|20092292|ref|NP_618367.1| - 8.9e-07 29.1 0.0 5.1e-06 26.7 0.0 2.3 2 1 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|20092292|ref|NP_618367.1| - 1.8e-06 28.4 0.3 7e-06 26.5 0.3 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|20092292|ref|NP_618367.1| - 9e-05 23.1 0.1 0.00018 22.2 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS PF00989.25 gi|20092292|ref|NP_618367.1| - 9.5e-05 22.4 0.0 0.00021 21.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|20092292|ref|NP_618367.1| - 0.0015 18.8 0.0 0.0031 17.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold Atthog PF18800.1 gi|20092292|ref|NP_618367.1| - 0.03 14.2 3.8 0.082 12.8 3.8 1.7 1 0 0 1 1 1 0 Attenuator of Hedgehog Pkip-1 PF06878.11 gi|20092292|ref|NP_618367.1| - 0.039 14.1 1.0 0.068 13.3 1.0 1.4 1 0 0 1 1 1 0 Pkip-1 protein HATPase_c_2 PF13581.6 gi|20092292|ref|NP_618367.1| - 0.16 11.9 0.0 0.72 9.8 0.0 2.0 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain Radical_SAM PF04055.21 gi|20092293|ref|NP_618368.1| - 2.6e-17 63.7 0.0 5.2e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DZR PF12773.7 gi|20092293|ref|NP_618368.1| - 0.0097 15.9 0.1 0.0097 15.9 0.1 2.8 2 1 0 2 2 2 1 Double zinc ribbon Fer4_12 PF13353.6 gi|20092293|ref|NP_618368.1| - 0.012 15.9 0.0 0.028 14.7 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain YhfH PF14149.6 gi|20092293|ref|NP_618368.1| - 0.039 13.9 0.2 0.039 13.9 0.2 3.3 4 0 0 4 4 4 0 YhfH-like protein zinc_ribbon_2 PF13240.6 gi|20092293|ref|NP_618368.1| - 0.045 13.5 11.5 0.054 13.2 0.2 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|20092293|ref|NP_618368.1| - 0.11 11.9 0.1 0.11 11.9 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|20092293|ref|NP_618368.1| - 0.24 11.8 4.2 9.3 6.7 0.0 3.6 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 gi|20092293|ref|NP_618368.1| - 0.36 10.4 5.8 1.3 8.6 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding GFA PF04828.14 gi|20092293|ref|NP_618368.1| - 1 9.7 6.5 1.9 8.9 0.1 3.4 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme NUDIX PF00293.28 gi|20092295|ref|NP_618370.1| - 2.3e-09 37.4 0.0 3.2e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain MttA_Hcf106 PF02416.16 gi|20092296|ref|NP_618371.1| - 4.8e-17 61.0 0.3 7e-17 60.5 0.3 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|20092296|ref|NP_618371.1| - 0.017 16.1 0.0 0.022 15.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) MttA_Hcf106 PF02416.16 gi|20092297|ref|NP_618372.1| - 3e-13 48.9 1.9 5.6e-13 48.0 1.8 1.6 1 1 0 1 1 1 1 mttA/Hcf106 family TatC PF00902.18 gi|20092298|ref|NP_618373.1| - 7.8e-49 166.3 21.1 9.4e-49 166.0 21.1 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TatC PF00902.18 gi|20092299|ref|NP_618374.1| - 6e-43 147.1 23.4 7.8e-43 146.7 23.4 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) EamA PF00892.20 gi|20092300|ref|NP_618375.1| - 3.7e-31 108.1 39.2 4.2e-20 72.3 15.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|20092300|ref|NP_618375.1| - 0.0011 18.4 16.1 0.0021 17.5 16.1 1.5 1 1 0 1 1 1 1 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|20092300|ref|NP_618375.1| - 0.0079 16.2 12.7 0.051 13.6 1.3 2.5 2 1 0 2 2 2 2 Putative transmembrane family 234 DUF4011 PF13195.6 gi|20092301|ref|NP_618376.1| - 4.1e-41 140.6 0.1 1.2e-40 139.1 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF4011) MTES_1575 PF18741.1 gi|20092301|ref|NP_618376.1| - 1.8e-34 117.8 0.0 3.7e-34 116.8 0.0 1.6 1 0 0 1 1 1 1 REase_MTES_1575 AAA_12 PF13087.6 gi|20092301|ref|NP_618376.1| - 1.3e-12 47.8 0.0 3.5e-12 46.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF3320 PF11784.8 gi|20092301|ref|NP_618376.1| - 1.4e-12 47.4 1.6 2.2e-12 46.7 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) AAA_11 PF13086.6 gi|20092301|ref|NP_618376.1| - 1.5e-12 47.9 0.1 2.4e-06 27.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|20092301|ref|NP_618376.1| - 4.4e-08 33.1 0.2 0.00028 20.7 0.2 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|20092301|ref|NP_618376.1| - 2.5e-06 27.9 0.0 0.0047 17.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|20092301|ref|NP_618376.1| - 5.3e-05 22.6 0.1 0.047 12.9 0.0 3.2 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|20092301|ref|NP_618376.1| - 0.0017 18.1 0.0 0.52 10.0 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|20092301|ref|NP_618376.1| - 0.0026 18.1 0.1 0.025 15.0 0.1 2.6 3 0 0 3 3 3 1 AAA ATPase domain UvrD-helicase PF00580.21 gi|20092301|ref|NP_618376.1| - 0.0079 15.8 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.14 gi|20092301|ref|NP_618376.1| - 0.009 15.9 0.0 0.065 13.1 0.0 2.3 3 0 0 3 3 2 1 Helicase DUF559 PF04480.12 gi|20092301|ref|NP_618376.1| - 0.011 15.6 0.0 0.029 14.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF559) ResIII PF04851.15 gi|20092301|ref|NP_618376.1| - 0.017 15.2 0.0 0.5 10.4 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RAP PF08373.10 gi|20092301|ref|NP_618376.1| - 0.031 14.4 0.0 0.25 11.5 0.0 2.3 2 0 0 2 2 2 0 RAP domain IstB_IS21 PF01695.17 gi|20092301|ref|NP_618376.1| - 0.032 14.0 0.0 0.079 12.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|20092301|ref|NP_618376.1| - 0.078 13.0 0.0 0.31 11.0 0.0 2.1 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) GvpD PF07088.11 gi|20092301|ref|NP_618376.1| - 0.093 11.3 0.0 0.43 9.1 0.0 1.8 2 0 0 2 2 2 0 GvpD gas vesicle protein AAA PF00004.29 gi|20092301|ref|NP_618376.1| - 0.11 12.9 0.1 3.5 8.0 0.0 3.2 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) DUF4439 PF14530.6 gi|20092301|ref|NP_618376.1| - 0.17 12.6 0.0 1.2 9.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) PNP_UDP_1 PF01048.20 gi|20092302|ref|NP_618377.1| - 7.2e-11 41.8 0.0 9.4e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily ComX PF05952.12 gi|20092302|ref|NP_618377.1| - 0.049 13.6 0.2 0.25 11.3 0.1 2.3 2 0 0 2 2 2 0 Bacillus competence pheromone ComX MULE PF10551.9 gi|20092303|ref|NP_618378.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20092303|ref|NP_618378.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20092303|ref|NP_618378.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20092303|ref|NP_618378.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20092303|ref|NP_618378.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20092303|ref|NP_618378.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20092303|ref|NP_618378.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20092303|ref|NP_618378.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20092303|ref|NP_618378.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20092303|ref|NP_618378.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20092303|ref|NP_618378.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger HNH PF01844.23 gi|20092304|ref|NP_618379.1| - 5.5e-08 32.9 4.1 1.1e-07 31.9 4.1 1.6 1 0 0 1 1 1 1 HNH endonuclease HEPN_AbiA_CTD PF18732.1 gi|20092304|ref|NP_618379.1| - 0.039 13.9 0.9 0.077 12.9 0.9 1.4 1 0 0 1 1 1 0 HEPN like, Abia C-terminal domain DUF287 PF03384.14 gi|20092304|ref|NP_618379.1| - 0.04 14.3 0.1 1.3 9.5 0.0 2.5 2 0 0 2 2 2 0 Drosophila protein of unknown function, DUF287 Inhibitor_G39P PF11417.8 gi|20092304|ref|NP_618379.1| - 0.11 13.0 0.7 0.24 12.0 0.4 1.7 1 1 0 1 1 1 0 Loader and inhibitor of phage G40P Transpos_assoc PF13963.6 gi|20092304|ref|NP_618379.1| - 0.14 12.5 4.1 1 9.7 1.0 2.4 1 1 0 2 2 2 0 Transposase-associated domain ZF-HD_dimer PF04770.12 gi|20092304|ref|NP_618379.1| - 0.32 11.4 4.7 0.14 12.5 1.4 1.9 2 0 0 2 2 2 0 ZF-HD protein dimerisation region TPR_2 PF07719.17 gi|20092305|ref|NP_618380.1| - 1.2e-50 165.6 13.5 4.4e-05 23.3 0.1 9.4 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092305|ref|NP_618380.1| - 1.4e-49 162.2 4.3 6.2e-05 22.9 0.0 10.1 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20092305|ref|NP_618380.1| - 1.9e-48 159.4 4.8 3.2e-05 24.0 0.1 9.3 10 0 0 10 10 9 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092305|ref|NP_618380.1| - 1.5e-44 148.0 10.5 1.7e-05 24.4 0.0 9.9 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20092305|ref|NP_618380.1| - 1.1e-37 128.2 13.8 6.3e-09 36.0 0.8 7.7 3 2 1 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20092305|ref|NP_618380.1| - 2.6e-34 117.6 0.9 9.4e-08 32.6 0.0 5.2 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092305|ref|NP_618380.1| - 1.9e-33 113.8 3.8 4.5e-05 23.0 0.0 9.1 2 1 7 9 9 9 8 TPR repeat TPR_19 PF14559.6 gi|20092305|ref|NP_618380.1| - 2.1e-29 101.8 5.2 1.6e-05 25.3 0.1 6.3 1 1 5 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092305|ref|NP_618380.1| - 1e-26 91.3 4.5 0.00025 21.6 0.0 9.1 2 1 7 9 9 9 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092305|ref|NP_618380.1| - 2.6e-22 77.1 4.8 0.036 14.1 0.0 9.7 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092305|ref|NP_618380.1| - 2.6e-19 68.4 24.1 0.024 14.5 0.1 9.1 9 0 0 9 9 9 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092305|ref|NP_618380.1| - 5.6e-17 61.6 2.2 0.00044 20.3 0.1 6.5 2 2 6 8 8 8 6 Tetratricopeptide repeat TPR_4 PF07721.14 gi|20092305|ref|NP_618380.1| - 1.2e-12 47.1 0.0 2.9 8.8 0.2 8.5 10 0 0 10 10 8 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20092305|ref|NP_618380.1| - 5.5e-12 45.7 6.9 0.0068 16.6 0.1 4.8 1 1 5 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|20092305|ref|NP_618380.1| - 4.2e-11 42.6 0.1 0.0015 17.8 0.0 4.0 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092305|ref|NP_618380.1| - 2.5e-08 34.0 5.7 0.85 10.4 0.1 7.8 9 0 0 9 9 8 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|20092305|ref|NP_618380.1| - 6.6e-08 32.3 0.4 0.33 10.3 0.0 4.4 2 1 2 5 5 5 2 Coatomer epsilon subunit NARP1 PF12569.8 gi|20092305|ref|NP_618380.1| - 8.2e-07 28.3 6.7 0.17 10.7 0.7 4.6 1 1 3 5 5 5 2 NMDA receptor-regulated protein 1 TPR_20 PF14561.6 gi|20092305|ref|NP_618380.1| - 1.2e-06 28.8 1.5 1.6 9.1 0.0 5.2 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20092305|ref|NP_618380.1| - 1.3e-05 24.7 0.1 0.86 8.9 0.1 3.7 1 1 1 3 3 3 2 MalT-like TPR region DUF3856 PF12968.7 gi|20092305|ref|NP_618380.1| - 2.7e-05 24.3 2.7 8.8 6.4 0.0 6.8 2 2 7 9 9 9 0 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|20092305|ref|NP_618380.1| - 0.00033 21.1 7.5 0.7 10.3 0.1 3.7 2 2 3 5 5 5 2 Bacterial transcriptional activator domain Pec_lyase_N PF04431.13 gi|20092305|ref|NP_618380.1| - 0.0021 18.3 1.9 19 5.6 0.3 4.5 4 1 1 5 5 5 0 Pectate lyase, N terminus PknG_TPR PF16918.5 gi|20092305|ref|NP_618380.1| - 0.028 13.2 0.0 0.14 10.8 0.0 1.9 1 1 0 2 2 2 0 Protein kinase G tetratricopeptide repeat Sec16_C PF12931.7 gi|20092305|ref|NP_618380.1| - 0.045 13.4 0.1 2.8 7.5 0.0 3.2 2 1 0 3 3 3 0 Sec23-binding domain of Sec16 HrpB1_HrpK PF09613.10 gi|20092305|ref|NP_618380.1| - 0.12 12.0 0.0 22 4.7 0.0 2.7 2 1 1 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) PvlArgDC PF01862.16 gi|20092306|ref|NP_618381.1| - 3.8e-62 208.9 0.1 4.2e-62 208.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Hydantoinase_A PF01968.18 gi|20092307|ref|NP_618382.1| - 5.2e-32 111.3 0.3 5.1e-30 104.7 0.0 3.2 4 0 0 4 4 4 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20092307|ref|NP_618382.1| - 1.5e-30 106.2 3.1 8.5e-27 94.0 1.1 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20092307|ref|NP_618382.1| - 3e-06 26.1 0.9 0.0094 14.6 0.2 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|20092307|ref|NP_618382.1| - 0.018 14.6 0.0 0.59 9.6 0.2 2.5 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Pan_kinase PF03309.14 gi|20092307|ref|NP_618382.1| - 0.08 12.7 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Type III pantothenate kinase Actin PF00022.19 gi|20092307|ref|NP_618382.1| - 0.13 10.8 0.0 0.24 10.0 0.0 1.3 1 0 0 1 1 1 0 Actin Hydantoinase_A PF01968.18 gi|20092308|ref|NP_618383.1| - 6.1e-33 114.3 1.2 1.8e-31 109.5 0.1 2.9 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20092308|ref|NP_618383.1| - 9.2e-33 113.4 2.2 2.1e-29 102.5 0.8 3.1 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20092308|ref|NP_618383.1| - 6.7e-06 25.0 0.6 0.012 14.3 0.1 2.3 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 gi|20092308|ref|NP_618383.1| - 0.058 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 ROK family BcrAD_BadFG PF01869.20 gi|20092308|ref|NP_618383.1| - 0.07 12.6 0.0 7.3 6.0 0.0 2.9 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FRB_dom PF08771.11 gi|20092309|ref|NP_618384.1| - 0.0052 17.2 0.2 0.0058 17.0 0.2 1.2 1 0 0 1 1 1 1 FKBP12-rapamycin binding domain ParE_toxin PF05016.15 gi|20092310|ref|NP_618385.1| - 3.4e-07 30.8 0.1 3.7e-07 30.7 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE DUF45 PF01863.17 gi|20092311|ref|NP_618386.1| - 4.2e-60 203.3 0.1 4.9e-60 203.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|20092311|ref|NP_618386.1| - 0.0023 18.1 0.1 0.0034 17.5 0.1 1.2 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.9 gi|20092311|ref|NP_618386.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 SprT-like family DDE_Tnp_1 PF01609.21 gi|20092312|ref|NP_618387.1| - 1.2e-10 41.5 0.2 6.6e-10 39.0 0.2 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF3040 PF11239.8 gi|20092313|ref|NP_618388.1| - 0.03 14.6 1.0 0.044 14.1 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF373 PF04123.13 gi|20092313|ref|NP_618388.1| - 0.062 12.7 0.1 0.077 12.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) RseC_MucC PF04246.12 gi|20092313|ref|NP_618388.1| - 0.45 10.5 1.2 0.69 9.9 1.2 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF308 PF03729.13 gi|20092313|ref|NP_618388.1| - 0.99 9.8 10.5 1.7 9.0 10.5 1.3 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DDE_Tnp_1_6 PF13751.6 gi|20092314|ref|NP_618389.1| - 9.6e-18 64.6 0.3 1.4e-17 64.1 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092314|ref|NP_618389.1| - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain IstB_IS21 PF01695.17 gi|20092315|ref|NP_618390.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20092315|ref|NP_618390.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20092315|ref|NP_618390.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20092315|ref|NP_618390.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20092315|ref|NP_618390.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20092315|ref|NP_618390.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20092315|ref|NP_618390.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092315|ref|NP_618390.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20092315|ref|NP_618390.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20092315|ref|NP_618390.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20092315|ref|NP_618390.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20092315|ref|NP_618390.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20092315|ref|NP_618390.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20092315|ref|NP_618390.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20092315|ref|NP_618390.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20092315|ref|NP_618390.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20092315|ref|NP_618390.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20092315|ref|NP_618390.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20092315|ref|NP_618390.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20092316|ref|NP_618391.1| - 5.3e-24 84.7 0.0 9.2e-24 83.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20092316|ref|NP_618391.1| - 1.2e-05 24.9 0.4 8.1e-05 22.3 0.0 2.5 2 1 1 3 3 3 1 Homeodomain-like domain HTH_38 PF13936.6 gi|20092316|ref|NP_618391.1| - 3.1e-05 23.6 0.1 6.7e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain rve_3 PF13683.6 gi|20092316|ref|NP_618391.1| - 8.9e-05 22.2 0.0 0.00019 21.2 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20092316|ref|NP_618391.1| - 0.0001 22.3 0.1 0.00023 21.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|20092316|ref|NP_618391.1| - 0.00034 20.6 0.0 0.0045 17.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_Tc3_1 PF11427.8 gi|20092316|ref|NP_618391.1| - 0.01 15.7 0.1 0.042 13.7 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Sigma70_r4 PF04545.16 gi|20092316|ref|NP_618391.1| - 0.019 14.5 0.1 0.05 13.1 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.12 gi|20092316|ref|NP_618391.1| - 0.035 14.0 0.1 0.11 12.4 0.0 1.9 2 0 0 2 2 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20092316|ref|NP_618391.1| - 0.04 14.0 0.1 0.076 13.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Phage_NinH PF06322.11 gi|20092316|ref|NP_618391.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4_2 PF08281.12 gi|20092316|ref|NP_618391.1| - 0.11 12.2 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|20092316|ref|NP_618391.1| - 0.16 12.2 0.0 0.48 10.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20092316|ref|NP_618391.1| - 0.2 11.2 0.0 0.4 10.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MTS PF05175.14 gi|20092317|ref|NP_618392.1| - 0.0018 17.9 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|20092317|ref|NP_618392.1| - 0.0036 17.2 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20092317|ref|NP_618392.1| - 0.0087 15.4 0.0 0.018 14.3 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 gi|20092317|ref|NP_618392.1| - 0.022 15.5 0.0 0.038 14.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|20092317|ref|NP_618392.1| - 0.057 13.0 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F PCMT PF01135.19 gi|20092317|ref|NP_618392.1| - 0.18 11.5 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_23 PF13384.6 gi|20092319|ref|NP_618394.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20092319|ref|NP_618394.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20092319|ref|NP_618394.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20092319|ref|NP_618394.1| - 0.002 17.8 0.1 0.0069 16.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20092319|ref|NP_618394.1| - 0.0065 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20092319|ref|NP_618394.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20092319|ref|NP_618394.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20092319|ref|NP_618394.1| - 0.02 13.9 0.1 0.036 13.0 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20092319|ref|NP_618394.1| - 0.043 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20092319|ref|NP_618394.1| - 0.057 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092319|ref|NP_618394.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20092319|ref|NP_618394.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20092319|ref|NP_618394.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin F420_ligase PF01996.16 gi|20092320|ref|NP_618395.1| - 2.9e-56 190.6 0.0 3.3e-56 190.3 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase GGDEF_2 PF17853.1 gi|20092320|ref|NP_618395.1| - 0.12 12.6 0.0 1.2 9.5 0.0 2.2 1 1 0 2 2 2 0 GGDEF-like domain DUF1638 PF07796.11 gi|20092321|ref|NP_618396.1| - 3e-33 115.2 0.2 4e-33 114.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Pox_A3L PF05288.11 gi|20092321|ref|NP_618396.1| - 0.045 13.7 0.2 0.18 11.8 0.1 2.0 2 0 0 2 2 2 0 Poxvirus A3L Protein MTHFR PF02219.17 gi|20092322|ref|NP_618397.1| - 1e-37 130.1 0.0 1.2e-37 129.8 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase MTHFR_C PF12225.8 gi|20092323|ref|NP_618398.1| - 2.2e-31 107.4 2.0 6e-31 106.0 2.0 1.7 1 0 0 1 1 1 1 Methylene-tetrahydrofolate reductase C terminal PrmA PF06325.13 gi|20092323|ref|NP_618398.1| - 0.087 12.2 0.1 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Pterin_bind PF00809.22 gi|20092324|ref|NP_618399.1| - 8.4e-60 202.5 0.0 1.1e-59 202.0 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme YlzJ PF14035.6 gi|20092325|ref|NP_618400.1| - 0.16 12.2 0.0 0.21 11.8 0.0 1.3 1 1 0 1 1 1 0 YlzJ-like protein THF_DHG_CYH_C PF02882.19 gi|20092327|ref|NP_618402.1| - 3.9e-64 214.8 3.1 5.6e-64 214.3 3.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|20092327|ref|NP_618402.1| - 1.2e-36 125.5 0.1 1.7e-36 125.0 0.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.21 gi|20092327|ref|NP_618402.1| - 0.036 14.1 2.1 2.9 8.0 2.1 2.3 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SHMT PF00464.19 gi|20092328|ref|NP_618403.1| - 8.5e-177 587.7 1.0 9.8e-177 587.5 1.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|20092328|ref|NP_618403.1| - 7.5e-09 35.2 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|20092328|ref|NP_618403.1| - 1.2e-05 24.8 0.0 2.2e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|20092328|ref|NP_618403.1| - 0.0026 17.1 0.1 0.0038 16.6 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|20092328|ref|NP_618403.1| - 0.028 13.2 0.0 0.055 12.2 0.0 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Formyl_trans_N PF00551.19 gi|20092330|ref|NP_618405.1| - 1.7e-59 200.6 0.0 2e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.22 gi|20092332|ref|NP_618407.1| - 8.4e-10 38.6 0.1 2.3e-09 37.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|20092332|ref|NP_618407.1| - 1.4e-07 31.5 0.2 1.8e-06 27.9 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|20092332|ref|NP_618407.1| - 1.8e-05 25.0 0.0 3.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|20092332|ref|NP_618407.1| - 0.0051 16.5 0.1 0.013 15.3 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_11 PF08279.12 gi|20092332|ref|NP_618407.1| - 0.0058 16.5 0.2 0.025 14.5 0.1 2.1 2 0 0 2 2 2 1 HTH domain MerR_1 PF13411.6 gi|20092332|ref|NP_618407.1| - 0.031 14.4 0.0 0.078 13.1 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sigma54_DBD PF04552.13 gi|20092332|ref|NP_618407.1| - 0.057 13.1 0.1 2.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Sigma-54, DNA binding domain Sigma70_r4 PF04545.16 gi|20092332|ref|NP_618407.1| - 0.11 12.1 0.1 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1743 PF08489.11 gi|20092333|ref|NP_618408.1| - 2.1e-43 147.0 0.0 9.5e-43 145.0 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|20092333|ref|NP_618408.1| - 0.0017 18.3 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|20092333|ref|NP_618408.1| - 0.0046 16.9 3.0 0.012 15.5 3.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|20092333|ref|NP_618408.1| - 0.0082 16.1 3.2 0.023 14.7 3.2 1.8 1 0 0 1 1 1 1 zinc-ribbons C1_1 PF00130.22 gi|20092333|ref|NP_618408.1| - 0.018 14.9 2.3 0.04 13.8 2.3 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|20092333|ref|NP_618408.1| - 0.049 13.8 2.3 3.5 7.8 0.1 2.8 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|20092333|ref|NP_618408.1| - 0.066 13.2 1.0 0.14 12.2 1.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|20092333|ref|NP_618408.1| - 0.071 12.8 5.8 0.12 12.1 4.4 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.16 gi|20092333|ref|NP_618408.1| - 0.072 13.0 0.9 0.22 11.4 0.9 1.8 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_ribbon_SprT PF17283.2 gi|20092333|ref|NP_618408.1| - 0.073 13.0 2.9 0.68 9.9 2.8 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092333|ref|NP_618408.1| - 0.11 12.5 4.3 0.33 11.0 4.3 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|20092333|ref|NP_618408.1| - 1.2 8.8 4.6 3.4 7.4 0.2 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|20092333|ref|NP_618408.1| - 1.4 9.0 7.4 0.37 10.9 3.7 2.0 2 0 0 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|20092333|ref|NP_618408.1| - 1.5 8.8 5.5 4.4 7.4 5.3 1.9 1 1 0 1 1 1 0 YhfH-like protein HscB_4_cys PF18256.1 gi|20092333|ref|NP_618408.1| - 2.6 7.9 4.7 9.7 6.1 4.7 2.1 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif NAD_synthase PF02540.17 gi|20092334|ref|NP_618409.1| - 1.9e-85 285.9 0.0 2.2e-85 285.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|20092334|ref|NP_618409.1| - 0.00066 18.6 0.0 0.0033 16.3 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|20092334|ref|NP_618409.1| - 0.066 12.7 0.0 0.31 10.5 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC AAA PF00004.29 gi|20092335|ref|NP_618410.1| - 5.5e-97 321.3 0.0 3.5e-47 160.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|20092335|ref|NP_618410.1| - 3.2e-32 110.1 2.2 1.2e-18 66.6 0.5 3.0 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|20092335|ref|NP_618410.1| - 3.1e-31 107.4 0.2 1.4e-30 105.3 0.2 2.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|20092335|ref|NP_618410.1| - 4.8e-16 58.3 0.2 8.9e-15 54.2 0.4 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|20092335|ref|NP_618410.1| - 2.6e-15 56.5 0.0 1.5e-07 31.3 0.0 2.9 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|20092335|ref|NP_618410.1| - 1.7e-13 50.7 0.2 2.6e-05 24.2 0.0 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|20092335|ref|NP_618410.1| - 3.1e-13 50.2 0.1 4.2e-05 23.7 0.0 3.1 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|20092335|ref|NP_618410.1| - 2.1e-12 47.7 2.3 0.00018 21.9 0.1 4.0 3 2 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|20092335|ref|NP_618410.1| - 2.3e-11 44.1 1.3 0.008 16.5 0.1 4.3 3 2 0 3 3 2 2 AAA domain TIP49 PF06068.13 gi|20092335|ref|NP_618410.1| - 8.9e-11 41.6 1.0 7.2e-06 25.4 0.0 3.1 3 1 0 3 3 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|20092335|ref|NP_618410.1| - 2.2e-10 40.7 0.0 0.00019 21.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|20092335|ref|NP_618410.1| - 6.8e-09 35.7 0.0 0.0018 18.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|20092335|ref|NP_618410.1| - 2e-08 34.5 0.0 0.0073 16.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|20092335|ref|NP_618410.1| - 4.3e-08 33.8 0.0 0.018 15.6 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|20092335|ref|NP_618410.1| - 2.6e-07 30.3 0.0 0.0066 16.0 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|20092335|ref|NP_618410.1| - 7.5e-07 29.0 0.1 0.03 14.0 0.0 3.7 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|20092335|ref|NP_618410.1| - 1e-06 28.3 0.2 0.031 13.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|20092335|ref|NP_618410.1| - 1.4e-06 28.0 4.0 0.12 12.0 0.0 4.0 3 1 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|20092335|ref|NP_618410.1| - 2.6e-06 27.8 0.0 0.098 13.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|20092335|ref|NP_618410.1| - 4.3e-06 27.1 0.7 0.089 13.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain ATPase PF06745.13 gi|20092335|ref|NP_618410.1| - 6.3e-06 25.7 0.9 0.043 13.2 0.1 4.0 3 1 1 4 4 4 1 KaiC AAA_24 PF13479.6 gi|20092335|ref|NP_618410.1| - 7.7e-06 25.8 0.0 0.15 11.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|20092335|ref|NP_618410.1| - 1.3e-05 24.4 0.1 0.12 11.4 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|20092335|ref|NP_618410.1| - 2e-05 25.1 0.1 0.34 11.4 0.0 3.3 3 1 0 3 3 2 2 ABC transporter Zeta_toxin PF06414.12 gi|20092335|ref|NP_618410.1| - 2.1e-05 23.9 0.1 0.056 12.7 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin PhoH PF02562.16 gi|20092335|ref|NP_618410.1| - 3.2e-05 23.5 0.0 0.4 10.1 0.0 3.0 2 0 0 2 2 2 2 PhoH-like protein TsaE PF02367.17 gi|20092335|ref|NP_618410.1| - 4.8e-05 23.3 0.0 0.28 11.2 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|20092335|ref|NP_618410.1| - 8e-05 22.5 0.0 0.73 9.7 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|20092335|ref|NP_618410.1| - 0.00012 22.5 0.1 0.35 11.3 0.0 3.2 3 0 0 3 3 2 1 AAA domain DUF2075 PF09848.9 gi|20092335|ref|NP_618410.1| - 0.00014 21.2 0.0 0.34 10.1 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|20092335|ref|NP_618410.1| - 0.00029 20.1 0.0 0.94 8.6 0.0 2.9 3 0 0 3 3 3 2 NB-ARC domain Vps4_C PF09336.10 gi|20092335|ref|NP_618410.1| - 0.00038 20.4 0.3 0.074 13.1 0.0 2.6 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.13 gi|20092335|ref|NP_618410.1| - 0.00044 19.5 0.0 0.38 9.9 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|20092335|ref|NP_618410.1| - 0.00062 20.1 1.4 1.9 8.8 0.0 3.2 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|20092335|ref|NP_618410.1| - 0.00085 19.1 1.4 0.75 9.5 0.2 2.9 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|20092335|ref|NP_618410.1| - 0.0013 18.6 2.1 0.84 9.4 0.0 3.2 4 0 0 4 4 3 1 AAA domain Bac_DnaA PF00308.18 gi|20092335|ref|NP_618410.1| - 0.0018 18.2 0.0 0.82 9.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein Rad17 PF03215.15 gi|20092335|ref|NP_618410.1| - 0.0022 17.9 0.1 0.53 10.2 0.0 3.0 2 1 1 3 3 3 1 Rad17 P-loop domain Guanylate_kin PF00625.21 gi|20092335|ref|NP_618410.1| - 0.0025 17.6 0.2 5.8 6.6 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase ResIII PF04851.15 gi|20092335|ref|NP_618410.1| - 0.0025 17.8 0.1 1.8 8.6 0.0 3.2 3 1 1 4 4 4 1 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.6 gi|20092335|ref|NP_618410.1| - 0.0027 17.8 0.0 2.5 8.2 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|20092335|ref|NP_618410.1| - 0.0035 17.3 0.5 5.9 6.8 0.0 3.4 4 0 0 4 4 4 0 NACHT domain ATPase_2 PF01637.18 gi|20092335|ref|NP_618410.1| - 0.0037 17.2 4.0 0.44 10.4 0.0 3.7 4 1 0 4 4 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|20092335|ref|NP_618410.1| - 0.0038 16.7 0.2 7.9 5.8 0.0 3.7 4 0 0 4 4 4 0 Bacterial TniB protein Cytidylate_kin2 PF13189.6 gi|20092335|ref|NP_618410.1| - 0.0046 17.1 0.0 0.37 10.9 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase-like family IPT PF01745.16 gi|20092335|ref|NP_618410.1| - 0.0053 16.2 0.1 1.4 8.3 0.0 2.6 2 0 0 2 2 2 1 Isopentenyl transferase ATP-synt_ab PF00006.25 gi|20092335|ref|NP_618410.1| - 0.016 14.9 0.0 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|20092335|ref|NP_618410.1| - 0.017 14.2 0.0 0.68 8.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|20092335|ref|NP_618410.1| - 0.018 14.8 0.3 4.7 6.9 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase NTPase_1 PF03266.15 gi|20092335|ref|NP_618410.1| - 0.027 14.4 3.1 8.1 6.3 0.0 3.8 3 1 1 4 4 3 0 NTPase Viral_helicase1 PF01443.18 gi|20092335|ref|NP_618410.1| - 0.027 14.2 0.0 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Hydin_ADK PF17213.3 gi|20092335|ref|NP_618410.1| - 0.07 13.4 1.4 3 8.1 0.1 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain SKI PF01202.22 gi|20092335|ref|NP_618410.1| - 0.075 13.2 0.5 11 6.1 0.0 2.9 3 0 0 3 3 2 0 Shikimate kinase Zot PF05707.12 gi|20092335|ref|NP_618410.1| - 0.095 12.3 0.0 4.6 6.8 0.0 2.9 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) KAP_NTPase PF07693.14 gi|20092335|ref|NP_618410.1| - 0.17 11.1 0.1 5.4 6.2 0.0 2.9 3 1 0 3 3 3 0 KAP family P-loop domain ADSL_C PF10397.9 gi|20092335|ref|NP_618410.1| - 6.2 7.4 6.5 2.5 8.7 0.1 3.5 4 0 0 4 4 2 0 Adenylosuccinate lyase C-terminus PRC PF05239.16 gi|20092336|ref|NP_618411.1| - 1.6e-16 60.1 0.4 1.8e-16 60.0 0.4 1.0 1 0 0 1 1 1 1 PRC-barrel domain DDE_Tnp_IS66 PF03050.14 gi|20092337|ref|NP_618412.1| - 4.1e-72 243.0 0.0 6.1e-72 242.5 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|20092337|ref|NP_618412.1| - 5.9e-11 42.6 9.7 3e-10 40.3 9.7 2.3 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|20092337|ref|NP_618412.1| - 0.0041 16.5 2.7 1.9 8.0 0.9 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|20092337|ref|NP_618412.1| - 0.02 14.9 1.2 0.09 12.8 1.2 2.1 1 0 0 1 1 1 0 Double zinc ribbon MitMem_reg PF13012.6 gi|20092337|ref|NP_618412.1| - 0.021 15.2 0.4 1.4 9.4 0.0 2.8 3 0 0 3 3 3 0 Maintenance of mitochondrial structure and function SlyX PF04102.12 gi|20092337|ref|NP_618412.1| - 0.022 15.4 3.9 0.062 13.9 0.1 3.3 3 1 0 3 3 3 0 SlyX Mod_r PF07200.13 gi|20092337|ref|NP_618412.1| - 0.031 14.4 2.1 0.73 9.9 0.2 2.9 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DDE_Tnp_IS240 PF13610.6 gi|20092337|ref|NP_618412.1| - 0.063 13.5 0.4 0.69 10.1 0.2 2.3 2 0 0 2 2 2 0 DDE domain DASH_Spc19 PF08287.11 gi|20092337|ref|NP_618412.1| - 0.097 12.6 0.1 0.097 12.6 0.1 2.2 3 0 0 3 3 3 0 Spc19 DUF2034 PF10356.9 gi|20092337|ref|NP_618412.1| - 0.12 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) zinc_ribbon_2 PF13240.6 gi|20092337|ref|NP_618412.1| - 0.2 11.4 9.6 2.1 8.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|20092337|ref|NP_618412.1| - 0.26 11.2 4.0 3.5 7.6 0.1 2.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS YhfH PF14149.6 gi|20092337|ref|NP_618412.1| - 0.74 9.8 6.2 8.7 6.4 1.7 2.8 2 0 0 2 2 2 0 YhfH-like protein ABC_tran_CTD PF16326.5 gi|20092337|ref|NP_618412.1| - 3 8.2 7.1 1.1 9.5 0.5 2.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|20092337|ref|NP_618412.1| - 8.8 6.5 7.4 7.5 6.7 0.5 3.1 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Methyltransf_25 PF13649.6 gi|20092338|ref|NP_618413.1| - 3.4e-11 43.7 0.0 6.9e-11 42.7 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092338|ref|NP_618413.1| - 2.9e-08 34.3 0.0 6.5e-08 33.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|20092338|ref|NP_618413.1| - 4.1e-08 32.9 0.0 4.6e-08 32.7 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|20092338|ref|NP_618413.1| - 5.6e-05 22.6 0.0 6.6e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_31 PF13847.6 gi|20092338|ref|NP_618413.1| - 0.00015 21.6 0.1 0.00031 20.6 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20092338|ref|NP_618413.1| - 0.0002 20.9 0.0 0.00026 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|20092338|ref|NP_618413.1| - 0.00027 20.8 0.0 0.0003 20.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|20092338|ref|NP_618413.1| - 0.00075 19.5 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092338|ref|NP_618413.1| - 0.0011 19.7 0.0 0.0016 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20092338|ref|NP_618413.1| - 0.0021 17.2 0.0 0.003 16.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|20092338|ref|NP_618413.1| - 0.0066 16.2 0.0 0.0079 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20092338|ref|NP_618413.1| - 0.0069 15.8 0.0 0.0085 15.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|20092338|ref|NP_618413.1| - 0.015 15.1 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|20092338|ref|NP_618413.1| - 0.017 15.0 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|20092338|ref|NP_618413.1| - 0.065 12.2 0.0 0.07 12.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_24 PF13578.6 gi|20092338|ref|NP_618413.1| - 0.078 14.0 0.0 0.11 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|20092338|ref|NP_618413.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 MetW PF07021.12 gi|20092338|ref|NP_618413.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PhzC-PhzF PF02567.16 gi|20092339|ref|NP_618414.1| - 1.1e-63 215.3 0.0 1.7e-63 214.8 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DUF3795 PF12675.7 gi|20092340|ref|NP_618415.1| - 0.00011 22.5 24.6 0.012 16.0 24.6 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3795) DpnI_C PF17726.1 gi|20092340|ref|NP_618415.1| - 0.041 14.0 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 Dam-replacing HTH domain Methyltransf_11 PF08241.12 gi|20092341|ref|NP_618416.1| - 3.6e-19 69.2 0.0 5.7e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092341|ref|NP_618416.1| - 8.7e-19 68.0 0.0 1.4e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092341|ref|NP_618416.1| - 1.8e-18 66.8 0.0 2.3e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092341|ref|NP_618416.1| - 3.3e-13 49.8 0.0 4e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092341|ref|NP_618416.1| - 1.1e-10 42.1 0.0 2.1e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092341|ref|NP_618416.1| - 2.1e-09 37.1 0.1 2.7e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|20092341|ref|NP_618416.1| - 2e-08 34.0 0.0 3e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|20092341|ref|NP_618416.1| - 2e-06 27.5 0.0 2.5e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|20092341|ref|NP_618416.1| - 3.3e-06 26.0 0.0 0.00012 20.8 0.0 2.0 1 1 1 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|20092341|ref|NP_618416.1| - 3.6e-06 26.6 0.0 5.8e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20092341|ref|NP_618416.1| - 1.6e-05 24.4 0.2 2.2e-05 24.0 0.2 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|20092341|ref|NP_618416.1| - 0.00027 20.0 0.0 0.00037 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|20092341|ref|NP_618416.1| - 0.00029 20.5 0.0 0.00041 20.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|20092341|ref|NP_618416.1| - 0.0012 18.7 0.1 0.003 17.4 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|20092341|ref|NP_618416.1| - 0.019 15.0 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|20092341|ref|NP_618416.1| - 0.025 13.9 0.0 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|20092341|ref|NP_618416.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cnd1 PF12717.7 gi|20092341|ref|NP_618416.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 GrpB PF04229.14 gi|20092342|ref|NP_618417.1| - 3.9e-47 160.4 0.0 4.4e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 GrpB protein MHB PF16525.5 gi|20092342|ref|NP_618417.1| - 0.0014 18.8 0.0 0.003 17.8 0.0 1.5 1 0 0 1 1 1 1 Haemophore, haem-binding ScsC_N PF18312.1 gi|20092342|ref|NP_618417.1| - 0.22 11.4 0.0 0.44 10.4 0.0 1.4 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain Cupin_2 PF07883.11 gi|20092344|ref|NP_618419.1| - 2.1e-07 30.6 0.0 9e-07 28.5 0.0 1.8 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|20092344|ref|NP_618419.1| - 0.00019 21.4 0.0 0.00027 20.9 0.0 1.3 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|20092344|ref|NP_618419.1| - 0.0014 18.3 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|20092344|ref|NP_618419.1| - 0.021 14.6 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ ARD PF03079.14 gi|20092344|ref|NP_618419.1| - 0.032 14.4 0.1 0.041 14.1 0.1 1.3 1 1 0 1 1 1 0 ARD/ARD' family MannoseP_isomer PF01050.18 gi|20092344|ref|NP_618419.1| - 0.087 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase DUF1772 PF08592.11 gi|20092345|ref|NP_618420.1| - 0.031 14.6 0.2 2.6 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) MgtE PF01769.16 gi|20092345|ref|NP_618420.1| - 0.037 14.4 4.9 0.69 10.3 0.7 2.1 2 0 0 2 2 2 0 Divalent cation transporter DUF4809 PF16067.5 gi|20092345|ref|NP_618420.1| - 0.071 13.3 0.4 0.13 12.4 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4809) DUF2207 PF09972.9 gi|20092345|ref|NP_618420.1| - 0.11 11.2 8.7 0.088 11.6 1.0 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) PrgI PF12666.7 gi|20092345|ref|NP_618420.1| - 1.1 10.0 6.9 6.8 7.5 0.1 2.3 2 1 0 2 2 2 0 PrgI family protein DUF4234 PF14018.6 gi|20092345|ref|NP_618420.1| - 2 8.6 5.6 76 3.5 5.6 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) Transglut_core PF01841.19 gi|20092346|ref|NP_618421.1| - 5e-12 46.3 0.0 6.5e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily AAA_lid_7 PF17867.1 gi|20092346|ref|NP_618421.1| - 0.0068 16.6 0.1 1.2 9.4 0.0 2.2 1 1 1 2 2 2 2 Midasin AAA lid domain PNK3P PF08645.11 gi|20092346|ref|NP_618421.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase Acetyltransf_1 PF00583.25 gi|20092348|ref|NP_618423.1| - 1.7e-13 50.8 0.1 1.1e-10 41.8 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20092348|ref|NP_618423.1| - 2.6e-06 27.8 0.0 8.6e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20092348|ref|NP_618423.1| - 3.5e-06 27.0 0.0 1e-05 25.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|20092348|ref|NP_618423.1| - 0.016 15.4 0.0 0.082 13.1 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20092348|ref|NP_618423.1| - 0.077 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CheB_methylest PF01339.17 gi|20092349|ref|NP_618424.1| - 7.4e-55 185.3 0.0 1.2e-54 184.5 0.0 1.4 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 gi|20092349|ref|NP_618424.1| - 1.3e-53 181.4 0.0 2.2e-53 180.6 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.6 gi|20092349|ref|NP_618424.1| - 4.4e-27 94.8 2.1 5.6e-25 88.0 0.1 3.9 5 0 0 5 5 2 1 PAS domain CheR_N PF03705.15 gi|20092349|ref|NP_618424.1| - 5.1e-17 61.3 0.0 1.1e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_9 PF13426.7 gi|20092349|ref|NP_618424.1| - 7.6e-13 48.6 0.4 2.7e-07 30.8 0.0 3.2 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|20092349|ref|NP_618424.1| - 6.3e-11 42.3 0.2 7.2e-08 32.4 0.0 4.3 4 1 0 4 4 4 1 PAS fold PAS_4 PF08448.10 gi|20092349|ref|NP_618424.1| - 3.5e-10 40.1 0.0 0.00068 19.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 gi|20092349|ref|NP_618424.1| - 3.1e-06 27.3 0.0 0.094 12.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|20092349|ref|NP_618424.1| - 2.2e-05 24.4 0.1 8.8e-05 22.4 0.0 2.1 2 0 0 2 2 1 1 PAS domain CENP-F_leu_zip PF10473.9 gi|20092349|ref|NP_618424.1| - 0.0022 18.0 19.5 0.0022 18.0 19.5 1.7 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fez1 PF06818.15 gi|20092349|ref|NP_618424.1| - 0.0043 17.5 6.6 0.01 16.3 6.6 1.5 1 0 0 1 1 1 1 Fez1 Exonuc_VII_L PF02601.15 gi|20092349|ref|NP_618424.1| - 0.011 15.4 1.2 0.018 14.6 0.6 1.6 2 0 0 2 2 1 0 Exonuclease VII, large subunit Spc7 PF08317.11 gi|20092349|ref|NP_618424.1| - 0.029 13.3 15.3 0.039 12.8 14.4 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein Peptidase_S64 PF08192.11 gi|20092349|ref|NP_618424.1| - 0.049 12.1 3.1 0.079 11.4 3.1 1.2 1 0 0 1 1 1 0 Peptidase family S64 IFT57 PF10498.9 gi|20092349|ref|NP_618424.1| - 0.053 12.5 9.8 0.085 11.8 9.8 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 OmpH PF03938.14 gi|20092349|ref|NP_618424.1| - 0.06 13.7 9.2 0.16 12.3 9.2 1.7 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) LMBR1 PF04791.16 gi|20092349|ref|NP_618424.1| - 0.071 12.0 3.3 0.11 11.4 3.3 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Golgin_A5 PF09787.9 gi|20092349|ref|NP_618424.1| - 0.074 12.5 15.2 0.15 11.5 15.2 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 5 HMMR_N PF15905.5 gi|20092349|ref|NP_618424.1| - 0.11 11.9 19.5 0.014 14.9 15.0 1.7 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal FapA PF03961.13 gi|20092349|ref|NP_618424.1| - 0.14 10.7 5.1 0.26 9.9 5.1 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF4527 PF15030.6 gi|20092349|ref|NP_618424.1| - 0.18 11.2 5.6 0.32 10.4 5.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) AAA_13 PF13166.6 gi|20092349|ref|NP_618424.1| - 0.23 10.1 6.6 0.37 9.4 6.6 1.3 1 0 0 1 1 1 0 AAA domain Prominin PF05478.11 gi|20092349|ref|NP_618424.1| - 0.25 9.3 2.3 0.37 8.7 2.3 1.2 1 0 0 1 1 1 0 Prominin Laminin_II PF06009.12 gi|20092349|ref|NP_618424.1| - 0.3 11.1 7.3 0.7 9.9 7.3 1.6 1 0 0 1 1 1 0 Laminin Domain II Het-C PF07217.11 gi|20092349|ref|NP_618424.1| - 0.31 9.5 4.3 0.49 8.9 4.3 1.2 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C Tropomyosin_1 PF12718.7 gi|20092349|ref|NP_618424.1| - 0.32 11.2 19.6 0.89 9.7 19.6 1.7 1 0 0 1 1 1 0 Tropomyosin like DUF1664 PF07889.12 gi|20092349|ref|NP_618424.1| - 0.4 10.7 3.4 1.2 9.2 3.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) ADIP PF11559.8 gi|20092349|ref|NP_618424.1| - 0.43 10.6 12.5 1.1 9.4 12.5 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding zf-C4H2 PF10146.9 gi|20092349|ref|NP_618424.1| - 0.45 10.8 6.1 1.4 9.2 6.1 1.8 1 0 0 1 1 1 0 Zinc finger-containing protein FAM76 PF16046.5 gi|20092349|ref|NP_618424.1| - 0.76 9.1 4.2 1.3 8.3 4.2 1.2 1 0 0 1 1 1 0 FAM76 protein APG6_N PF17675.1 gi|20092349|ref|NP_618424.1| - 0.76 10.3 17.0 2.1 8.9 17.0 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region DASH_Duo1 PF08651.10 gi|20092349|ref|NP_618424.1| - 0.84 9.5 12.3 0.29 10.9 4.9 2.6 1 1 0 2 2 2 0 DASH complex subunit Duo1 Jnk-SapK_ap_N PF09744.9 gi|20092349|ref|NP_618424.1| - 0.87 9.8 16.8 2.4 8.3 16.8 1.7 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 WXG100 PF06013.12 gi|20092349|ref|NP_618424.1| - 1 9.7 3.7 1.5 9.1 1.4 2.2 1 1 0 1 1 1 0 Proteins of 100 residues with WXG DUF3450 PF11932.8 gi|20092349|ref|NP_618424.1| - 1.1 8.5 10.9 2.3 7.5 10.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) UPF0242 PF06785.11 gi|20092349|ref|NP_618424.1| - 1.4 9.0 14.0 2.8 8.0 14.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|20092349|ref|NP_618424.1| - 1.5 7.8 7.9 2.6 7.1 7.9 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HAUS-augmin3 PF14932.6 gi|20092349|ref|NP_618424.1| - 1.6 8.3 14.0 3.1 7.3 14.0 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 TPR_MLP1_2 PF07926.12 gi|20092349|ref|NP_618424.1| - 1.7 8.7 23.9 0.23 11.5 19.5 1.8 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein CorA PF01544.18 gi|20092349|ref|NP_618424.1| - 1.8 7.8 6.8 3.3 7.0 6.8 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HrpB7 PF09486.10 gi|20092349|ref|NP_618424.1| - 1.9 8.9 7.6 2.8 8.3 0.6 2.4 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF3552 PF12072.8 gi|20092349|ref|NP_618424.1| - 1.9 7.9 15.0 4.7 6.6 15.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMPIT PF07851.13 gi|20092349|ref|NP_618424.1| - 2.2 7.5 5.4 3.6 6.7 5.4 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF4407 PF14362.6 gi|20092349|ref|NP_618424.1| - 2.3 7.5 7.5 4.5 6.5 7.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HemX PF04375.14 gi|20092349|ref|NP_618424.1| - 2.5 7.3 9.4 4.2 6.6 9.4 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase KxDL PF10241.9 gi|20092349|ref|NP_618424.1| - 3.1 8.2 9.2 4.4 7.6 1.1 2.7 1 1 1 2 2 2 0 Uncharacterized conserved protein Seryl_tRNA_N PF02403.22 gi|20092349|ref|NP_618424.1| - 3.3 8.0 16.1 0.57 10.4 11.2 2.4 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain DUF16 PF01519.16 gi|20092349|ref|NP_618424.1| - 3.6 8.1 9.1 18 5.9 9.1 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 Dzip-like_N PF13815.6 gi|20092349|ref|NP_618424.1| - 3.9 7.5 7.0 4.5 7.3 5.0 2.2 2 0 0 2 2 1 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal GrpE PF01025.19 gi|20092349|ref|NP_618424.1| - 4 7.1 12.2 9.8 5.8 12.2 1.6 1 0 0 1 1 1 0 GrpE DUF2203 PF09969.9 gi|20092349|ref|NP_618424.1| - 5.1 7.9 6.4 4.1 8.1 4.0 2.1 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) Fmp27_WPPW PF10359.9 gi|20092349|ref|NP_618424.1| - 5.1 5.8 8.1 10 4.9 8.1 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Sec8_exocyst PF04048.14 gi|20092349|ref|NP_618424.1| - 5.5 6.9 9.3 7.6 6.4 7.9 1.9 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain ZapB PF06005.12 gi|20092349|ref|NP_618424.1| - 6.7 7.2 27.9 18 5.9 12.0 3.6 2 1 1 3 3 3 0 Cell division protein ZapB DUF724 PF05266.14 gi|20092349|ref|NP_618424.1| - 7.3 6.4 11.5 18 5.1 11.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF724) HIP1_clath_bdg PF16515.5 gi|20092349|ref|NP_618424.1| - 7.6 7.2 18.8 51 4.6 17.5 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 MCC-bdg_PDZ PF10506.9 gi|20092349|ref|NP_618424.1| - 9.8 6.3 12.3 19 5.4 2.2 2.9 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome PAS_3 PF08447.12 gi|20092350|ref|NP_618425.1| - 1.5e-46 156.6 0.1 6.7e-22 77.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.12 gi|20092350|ref|NP_618425.1| - 3.6e-31 107.1 1.0 2.9e-30 104.2 0.9 2.6 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.25 gi|20092350|ref|NP_618425.1| - 1.1e-28 99.4 0.1 4.2e-13 49.3 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|20092350|ref|NP_618425.1| - 4e-28 97.7 1.0 8.6e-14 51.7 0.0 4.5 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|20092350|ref|NP_618425.1| - 9.4e-16 58.0 0.0 4e-11 43.2 0.0 3.5 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|20092350|ref|NP_618425.1| - 3.8e-09 36.4 0.0 2.5e-06 27.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|20092350|ref|NP_618425.1| - 7.2e-08 32.9 0.1 7.4e-07 29.7 0.0 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|20092350|ref|NP_618425.1| - 5.2e-05 23.4 0.0 0.58 10.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain HWE_HK PF07536.14 gi|20092350|ref|NP_618425.1| - 0.0055 17.4 0.2 0.028 15.1 0.1 2.2 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|20092350|ref|NP_618425.1| - 0.041 13.8 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|20092350|ref|NP_618425.1| - 0.067 12.9 0.0 0.27 11.0 0.0 2.2 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Hydrolase_3 PF08282.12 gi|20092351|ref|NP_618426.1| - 8.2e-33 114.2 2.0 1.9e-23 83.5 0.4 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|20092351|ref|NP_618426.1| - 1.5e-09 37.8 0.0 2.2e-08 34.0 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|20092351|ref|NP_618426.1| - 2.6e-08 34.4 1.1 0.00021 21.6 0.0 2.8 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20092351|ref|NP_618426.1| - 0.0002 21.9 0.6 0.17 12.3 0.0 3.3 1 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|20092351|ref|NP_618426.1| - 0.00022 20.4 0.0 0.00045 19.4 0.0 1.6 1 0 0 1 1 1 1 Trehalose-phosphatase HAD_2 PF13419.6 gi|20092351|ref|NP_618426.1| - 0.029 14.4 0.3 0.14 12.2 0.1 2.2 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20092351|ref|NP_618426.1| - 0.049 13.7 0.1 0.083 13.0 0.1 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like Rad51 PF08423.11 gi|20092352|ref|NP_618427.1| - 5.9e-87 291.1 0.0 7.7e-87 290.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|20092352|ref|NP_618427.1| - 2.9e-13 50.2 0.5 7.7e-13 48.8 0.2 1.9 2 0 0 2 2 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|20092352|ref|NP_618427.1| - 4e-09 36.3 0.1 1.6e-07 31.1 0.1 2.2 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|20092352|ref|NP_618427.1| - 1.7e-07 31.0 0.0 2.7e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|20092352|ref|NP_618427.1| - 7.7e-07 28.7 0.6 1.4e-06 27.9 0.6 1.4 1 1 0 1 1 1 1 KaiC HHH PF00633.23 gi|20092352|ref|NP_618427.1| - 2.4e-06 27.1 2.5 0.0061 16.4 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|20092352|ref|NP_618427.1| - 1.1e-05 25.5 0.2 2.4e-05 24.3 0.2 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|20092352|ref|NP_618427.1| - 4e-05 23.8 0.0 0.00026 21.2 0.0 2.2 1 1 1 2 2 2 1 Pathogenicity locus AAA_22 PF13401.6 gi|20092352|ref|NP_618427.1| - 0.00027 21.2 0.0 0.00055 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain DNA_pol_lambd_f PF10391.9 gi|20092352|ref|NP_618427.1| - 0.00074 19.3 0.0 0.0025 17.6 0.0 1.9 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda AAA_24 PF13479.6 gi|20092352|ref|NP_618427.1| - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain IMS_HHH PF11798.8 gi|20092352|ref|NP_618427.1| - 0.0033 17.7 0.0 0.017 15.4 0.0 2.3 3 0 0 3 3 1 1 IMS family HHH motif HHH_3 PF12836.7 gi|20092352|ref|NP_618427.1| - 0.0066 16.7 0.2 3.5 7.9 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|20092352|ref|NP_618427.1| - 0.0084 16.5 0.1 0.5 10.8 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain BAF PF02961.14 gi|20092352|ref|NP_618427.1| - 0.0089 16.4 0.0 0.061 13.8 0.0 2.2 2 0 0 2 2 2 1 Barrier to autointegration factor NACHT PF05729.12 gi|20092352|ref|NP_618427.1| - 0.024 14.5 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF4332 PF14229.6 gi|20092352|ref|NP_618427.1| - 0.026 14.8 0.0 0.072 13.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) ATPase_2 PF01637.18 gi|20092352|ref|NP_618427.1| - 0.033 14.1 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea LytR_C PF13399.6 gi|20092352|ref|NP_618427.1| - 0.064 14.2 0.2 0.61 11.1 0.2 2.3 3 0 0 3 3 2 0 LytR cell envelope-related transcriptional attenuator PhoH PF02562.16 gi|20092352|ref|NP_618427.1| - 0.067 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|20092352|ref|NP_618427.1| - 0.074 13.6 0.2 5.3 7.5 0.1 2.3 2 0 0 2 2 2 0 ABC transporter AAA_18 PF13238.6 gi|20092352|ref|NP_618427.1| - 0.096 13.2 0.1 0.42 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|20092352|ref|NP_618427.1| - 0.1 11.8 0.0 7.4 5.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|20092352|ref|NP_618427.1| - 0.14 11.1 0.2 0.3 9.9 0.2 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CTP_transf_like PF01467.26 gi|20092353|ref|NP_618428.1| - 1.7e-14 54.2 0.0 1.9e-14 54.1 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF4254 PF14063.6 gi|20092353|ref|NP_618428.1| - 0.072 12.9 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4254) FAD_syn PF06574.12 gi|20092353|ref|NP_618428.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 FAD synthetase DUF4351 PF14261.6 gi|20092354|ref|NP_618429.1| - 0.0019 18.2 0.4 0.0083 16.2 0.4 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4351) AP_endonuc_2 PF01261.24 gi|20092355|ref|NP_618430.1| - 9.4e-21 74.2 0.0 1.3e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF378 PF04070.12 gi|20092357|ref|NP_618432.1| - 1.4e-23 82.6 6.5 1.6e-23 82.3 6.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF2207 PF09972.9 gi|20092357|ref|NP_618432.1| - 0.039 12.7 0.3 0.047 12.5 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NdhL PF10716.9 gi|20092357|ref|NP_618432.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NADH dehydrogenase transmembrane subunit DUF1676 PF07898.13 gi|20092357|ref|NP_618432.1| - 0.42 10.6 2.9 0.53 10.3 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) ABC_tran PF00005.27 gi|20092358|ref|NP_618433.1| - 4e-33 114.8 0.0 6.1e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092358|ref|NP_618433.1| - 7.8e-12 45.6 1.5 4.4e-07 30.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092358|ref|NP_618433.1| - 5.1e-07 29.3 0.0 9.5e-07 28.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20092358|ref|NP_618433.1| - 0.0013 18.5 0.1 0.0027 17.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|20092358|ref|NP_618433.1| - 0.0093 15.7 0.4 0.027 14.2 0.2 1.7 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20092358|ref|NP_618433.1| - 0.015 15.2 0.2 0.044 13.7 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|20092358|ref|NP_618433.1| - 0.022 15.3 0.1 0.038 14.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|20092358|ref|NP_618433.1| - 0.19 11.2 0.0 0.44 10.0 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region CbiQ PF02361.16 gi|20092359|ref|NP_618434.1| - 3.2e-42 144.6 12.2 3.2e-42 144.6 12.2 1.5 2 0 0 2 2 2 1 Cobalt transport protein CbiN PF02553.15 gi|20092360|ref|NP_618435.1| - 1.8e-25 88.6 0.4 2.3e-25 88.4 0.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.16 gi|20092361|ref|NP_618436.1| - 1e-52 179.0 21.4 1.2e-52 178.8 21.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region SNARE_assoc PF09335.11 gi|20092362|ref|NP_618437.1| - 1.2e-16 61.3 4.7 1.2e-16 61.3 4.7 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.11 gi|20092362|ref|NP_618437.1| - 0.0012 19.5 0.9 0.0018 18.9 0.3 1.5 1 1 1 2 2 2 1 Putative small multi-drug export protein DUF4112 PF13430.6 gi|20092362|ref|NP_618437.1| - 0.069 13.4 0.5 0.18 12.1 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) S-layer PF07752.11 gi|20092363|ref|NP_618438.1| - 2.2e-199 659.4 30.3 3.4e-101 337.6 9.6 2.6 3 0 0 3 3 3 2 S-layer protein CarboxypepD_reg PF13620.6 gi|20092363|ref|NP_618438.1| - 8.1e-11 42.0 14.8 1.5e-06 28.3 3.5 4.3 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain CARDB PF07705.11 gi|20092363|ref|NP_618438.1| - 1.8e-07 31.3 1.1 1.8e-07 31.3 1.1 3.1 2 1 0 2 2 2 1 CARDB CarbopepD_reg_2 PF13715.6 gi|20092363|ref|NP_618438.1| - 6e-07 29.4 12.6 2.7e-05 24.1 2.1 4.8 4 1 1 5 5 5 2 CarboxypepD_reg-like domain Big_7 PF17957.1 gi|20092363|ref|NP_618438.1| - 2.9e-05 24.8 22.9 0.062 14.1 1.0 5.3 4 0 0 4 4 4 3 Bacterial Ig domain YtkA PF13115.6 gi|20092363|ref|NP_618438.1| - 3.5e-05 24.3 6.6 0.017 15.8 0.3 3.7 3 0 0 3 3 3 2 YtkA-like DUF4198 PF10670.9 gi|20092363|ref|NP_618438.1| - 0.00068 20.1 2.7 0.25 11.7 0.2 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) BiPBP_C PF06832.12 gi|20092363|ref|NP_618438.1| - 0.0029 17.6 0.0 0.39 10.8 0.0 3.0 3 0 0 3 3 2 1 Penicillin-Binding Protein C-terminus Family DUF4982 PF16355.5 gi|20092363|ref|NP_618438.1| - 0.0032 17.4 0.1 1.9 8.5 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4982) tRNA-synt_1c_C PF03950.18 gi|20092363|ref|NP_618438.1| - 0.0039 17.1 0.8 12 5.7 0.0 4.0 4 0 0 4 4 4 0 tRNA synthetases class I (E and Q), anti-codon binding domain SH3_16 PF18348.1 gi|20092363|ref|NP_618438.1| - 0.0076 16.0 0.8 4.9 7.0 0.1 2.5 2 0 0 2 2 2 2 Bacterial dipeptidyl-peptidase Sh3 domain Big_4 PF07532.11 gi|20092363|ref|NP_618438.1| - 0.01 15.5 2.0 2.8 7.7 0.0 3.4 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 4) PEGA PF08308.11 gi|20092363|ref|NP_618438.1| - 0.032 14.1 5.6 0.35 10.8 1.5 4.3 4 0 0 4 4 4 0 PEGA domain Cupredoxin_1 PF13473.6 gi|20092363|ref|NP_618438.1| - 0.085 13.0 0.2 1.3 9.1 0.1 3.2 2 1 0 2 2 2 0 Cupredoxin-like domain DUF4397 PF14344.6 gi|20092363|ref|NP_618438.1| - 0.11 13.2 8.0 0.52 11.1 0.3 3.6 3 1 0 4 4 3 0 Domain of unknown function (DUF4397) Y_Y_Y PF07495.13 gi|20092363|ref|NP_618438.1| - 0.25 11.3 5.5 31 4.6 0.0 4.1 4 0 0 4 4 3 0 Y_Y_Y domain PrcB_C PF14343.6 gi|20092363|ref|NP_618438.1| - 1.3 9.2 6.5 25 5.1 0.1 3.8 4 0 0 4 4 3 0 PrcB C-terminal Big_3_5 PF16640.5 gi|20092363|ref|NP_618438.1| - 1.4 9.2 20.9 0.15 12.2 3.0 3.8 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) PKD PF00801.20 gi|20092363|ref|NP_618438.1| - 8.3 6.3 8.5 9.3 6.2 0.1 3.6 4 0 0 4 4 3 0 PKD domain tRNA_NucTransf2 PF09249.11 gi|20092365|ref|NP_618440.1| - 8.3e-45 151.7 0.0 9e-44 148.3 0.0 2.2 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|20092365|ref|NP_618440.1| - 7e-13 48.7 0.0 2.2e-12 47.1 0.0 1.9 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|20092365|ref|NP_618440.1| - 0.00046 20.4 0.0 0.00081 19.6 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DNA_pol_B_palm PF14792.6 gi|20092365|ref|NP_618440.1| - 0.027 14.7 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm Polbeta PF18765.1 gi|20092365|ref|NP_618440.1| - 0.12 12.5 0.0 0.42 10.7 0.0 2.0 1 1 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase HEAT_2 PF13646.6 gi|20092366|ref|NP_618441.1| - 6.2e-56 186.8 0.6 1.1e-09 38.5 0.1 7.6 4 3 3 7 7 7 7 HEAT repeats HEAT PF02985.22 gi|20092366|ref|NP_618441.1| - 3.6e-26 89.0 9.9 0.51 10.7 0.0 15.5 17 0 0 17 17 16 4 HEAT repeat Adaptin_N PF01602.20 gi|20092366|ref|NP_618441.1| - 4.1e-25 88.4 0.1 2.4e-07 29.7 0.0 5.7 1 1 5 6 6 6 5 Adaptin N terminal region PNP_UDP_1 PF01048.20 gi|20092366|ref|NP_618441.1| - 6.1e-21 74.7 0.0 1.5e-20 73.4 0.0 1.7 2 0 0 2 2 2 1 Phosphorylase superfamily Cnd1 PF12717.7 gi|20092366|ref|NP_618441.1| - 1.8e-18 67.1 0.1 0.00027 21.0 0.0 6.4 1 1 7 8 8 8 5 non-SMC mitotic condensation complex subunit 1 DUF4745 PF15923.5 gi|20092366|ref|NP_618441.1| - 1.6e-09 37.9 2.2 2 8.4 0.0 7.0 2 2 3 6 6 6 3 Domain of unknown function (DUF4745) Nipped-B_C PF12830.7 gi|20092366|ref|NP_618441.1| - 4.6e-08 33.2 0.0 0.42 10.5 0.0 5.5 5 0 0 5 5 5 2 Sister chromatid cohesion C-terminus CLASP_N PF12348.8 gi|20092366|ref|NP_618441.1| - 7.8e-08 32.2 3.9 0.4 10.2 0.1 5.4 1 1 5 6 6 6 3 CLASP N terminal HEAT_EZ PF13513.6 gi|20092366|ref|NP_618441.1| - 1.1e-07 32.2 15.0 0.82 10.2 0.3 11.4 11 3 2 13 13 12 1 HEAT-like repeat Vac14_Fab1_bd PF12755.7 gi|20092366|ref|NP_618441.1| - 1.3e-06 28.9 4.3 13 6.4 0.1 8.9 7 3 4 11 11 10 0 Vacuolar 14 Fab1-binding region Arm PF00514.23 gi|20092366|ref|NP_618441.1| - 0.0017 18.3 0.1 69 3.7 0.0 5.6 5 0 0 5 5 5 0 Armadillo/beta-catenin-like repeat TetR_C_11 PF16859.5 gi|20092366|ref|NP_618441.1| - 0.0018 18.6 1.2 8.4 6.8 0.0 4.9 4 0 0 4 4 4 1 Tetracyclin repressor-like, C-terminal domain MMS19_N PF14500.6 gi|20092366|ref|NP_618441.1| - 0.0023 17.5 2.4 22 4.5 0.0 6.3 4 2 2 6 6 6 0 Dos2-interacting transcription regulator of RNA-Pol-II V-ATPase_H_N PF03224.14 gi|20092366|ref|NP_618441.1| - 0.0025 17.1 13.6 1.9 7.7 0.3 6.5 1 1 5 6 6 6 1 V-ATPase subunit H MlaC PF05494.12 gi|20092366|ref|NP_618441.1| - 0.097 12.4 3.9 12 5.6 0.1 3.9 4 1 1 5 5 4 0 MlaC protein TAF6_C PF07571.13 gi|20092366|ref|NP_618441.1| - 0.1 13.0 0.1 19 5.7 0.0 4.4 3 1 0 3 3 3 0 TAF6 C-terminal HEAT repeat domain ARHGEF5_35 PF15441.6 gi|20092366|ref|NP_618441.1| - 0.11 11.4 2.8 28 3.5 0.1 4.3 3 1 0 4 4 4 0 Rho guanine nucleotide exchange factor 5/35 OGG_N PF07934.12 gi|20092367|ref|NP_618442.1| - 1.2e-22 80.3 0.4 2e-21 76.3 0.4 2.3 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|20092367|ref|NP_618442.1| - 1.5e-08 35.0 0.0 2.7e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|20092367|ref|NP_618442.1| - 0.0092 15.8 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif ADP_PFK_GK PF04587.15 gi|20092368|ref|NP_618443.1| - 1.7e-84 283.9 0.0 3.9e-84 282.7 0.0 1.5 1 1 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ADP_PFK_GK PF04587.15 gi|20092369|ref|NP_618444.1| - 1.9e-109 366.1 0.0 2.1e-109 365.9 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ArgJ PF01960.18 gi|20092370|ref|NP_618445.1| - 5.9e-133 443.2 3.7 7e-133 443.0 3.7 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.28 gi|20092371|ref|NP_618446.1| - 1.5e-35 121.4 4.2 3.3e-17 62.7 0.1 2.2 2 0 0 2 2 2 2 CBS domain GST_N PF02798.20 gi|20092371|ref|NP_618446.1| - 0.016 15.6 0.0 0.97 9.8 0.0 2.2 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain Peptidase_S55 PF05580.12 gi|20092371|ref|NP_618446.1| - 0.039 13.9 0.1 0.88 9.5 0.0 2.2 2 0 0 2 2 2 0 SpoIVB peptidase S55 MoaE PF02391.17 gi|20092371|ref|NP_618446.1| - 0.11 12.8 0.2 0.17 12.2 0.2 1.3 1 0 0 1 1 1 0 MoaE protein GCV_T_C PF08669.11 gi|20092371|ref|NP_618446.1| - 0.12 12.3 0.0 21 5.1 0.0 2.4 2 0 0 2 2 2 0 Glycine cleavage T-protein C-terminal barrel domain H_kinase_N PF12282.8 gi|20092371|ref|NP_618446.1| - 0.14 12.1 0.6 1.1 9.2 0.3 2.0 2 0 0 2 2 2 0 Signal transduction histidine kinase Semialdhyde_dh PF01118.24 gi|20092372|ref|NP_618447.1| - 3.8e-34 117.7 0.0 6.1e-34 117.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|20092372|ref|NP_618447.1| - 3.3e-25 89.2 0.0 4.4e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|20092372|ref|NP_618447.1| - 0.0041 17.9 0.0 0.039 14.8 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|20092372|ref|NP_618447.1| - 0.024 14.8 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|20092372|ref|NP_618447.1| - 0.17 12.5 0.0 0.51 11.0 0.0 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pilin_N PF07790.11 gi|20092373|ref|NP_618448.1| - 2.3e-09 38.1 0.0 2.7e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Nuc_deoxyrib_tr PF05014.15 gi|20092374|ref|NP_618449.1| - 4.8e-27 94.5 0.0 5.4e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|20092374|ref|NP_618449.1| - 1.3e-19 70.4 0.0 1.7e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like LDcluster4 PF18306.1 gi|20092374|ref|NP_618449.1| - 0.00041 20.0 0.0 0.00056 19.5 0.0 1.3 1 0 0 1 1 1 1 SLOG cluster4 family Acetyltransf_10 PF13673.7 gi|20092376|ref|NP_618451.1| - 9.3e-16 57.9 0.0 1e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20092376|ref|NP_618451.1| - 5.4e-15 55.6 0.1 8.5e-15 54.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20092376|ref|NP_618451.1| - 2.3e-13 50.4 0.1 3.1e-13 50.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|20092376|ref|NP_618451.1| - 0.004 17.8 0.0 0.0055 17.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20092376|ref|NP_618451.1| - 0.005 16.8 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|20092376|ref|NP_618451.1| - 0.012 15.7 0.0 3.4 7.8 0.0 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain UPF0669 PF17065.5 gi|20092376|ref|NP_618451.1| - 0.039 13.7 0.0 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 Putative cytokine, C6ORF120 Zip PF02535.22 gi|20092377|ref|NP_618452.1| - 1.2 8.3 2.8 1.2 8.3 2.8 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter SgrR_N PF12793.7 gi|20092378|ref|NP_618453.1| - 0.074 13.3 0.0 0.23 11.7 0.0 1.9 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DUF4096 PF13340.6 gi|20092379|ref|NP_618454.1| - 3.7e-28 97.5 0.2 9.7e-28 96.2 0.2 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20092379|ref|NP_618454.1| - 4.2e-15 56.0 3.5 2.9e-14 53.2 3.5 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20092379|ref|NP_618454.1| - 2.2e-12 47.2 2.1 4.4e-12 46.2 0.8 2.0 2 0 0 2 2 2 1 Transposase DDE domain DUF2989 PF11207.8 gi|20092380|ref|NP_618455.1| - 0.0058 16.4 0.6 0.38 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2989) Glyco_hydro_31 PF01055.26 gi|20092380|ref|NP_618455.1| - 0.025 13.8 4.1 0.17 11.0 0.6 2.3 2 1 0 2 2 2 0 Glycosyl hydrolases family 31 GST_C PF00043.25 gi|20092380|ref|NP_618455.1| - 0.22 11.7 3.7 2.5 8.4 0.0 3.7 3 1 1 4 4 4 0 Glutathione S-transferase, C-terminal domain AAA_14 PF13173.6 gi|20092381|ref|NP_618456.1| - 2e-32 111.9 0.0 3.7e-32 111.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|20092381|ref|NP_618456.1| - 7.2e-11 42.3 0.0 2e-10 40.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) MobB PF03205.14 gi|20092381|ref|NP_618456.1| - 0.0026 17.6 0.1 0.0048 16.8 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|20092381|ref|NP_618456.1| - 0.0051 17.2 0.0 0.19 12.1 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|20092381|ref|NP_618456.1| - 0.0071 16.3 0.7 0.39 10.6 0.1 3.0 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|20092381|ref|NP_618456.1| - 0.031 14.7 0.0 0.62 10.6 0.0 2.6 2 1 0 2 2 2 0 Archaea bacterial proteins of unknown function Hjc PF01870.18 gi|20092381|ref|NP_618456.1| - 0.04 13.9 0.0 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) NUMOD1 PF07453.13 gi|20092381|ref|NP_618456.1| - 0.061 13.6 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain AAA_22 PF13401.6 gi|20092381|ref|NP_618456.1| - 0.074 13.3 0.0 0.93 9.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain DUF463 PF04317.12 gi|20092381|ref|NP_618456.1| - 0.084 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 6PF2K PF01591.18 gi|20092381|ref|NP_618456.1| - 0.086 12.1 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase HTH_11 PF08279.12 gi|20092381|ref|NP_618456.1| - 0.11 12.5 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain Spore_IV_A PF09547.10 gi|20092381|ref|NP_618456.1| - 0.15 11.0 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) Methylase_S PF01420.19 gi|20092382|ref|NP_618457.1| - 8.1e-10 39.2 0.2 1.1e-09 38.8 0.2 1.2 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain DUF3387 PF11867.8 gi|20092385|ref|NP_618460.1| - 6.4e-27 94.8 0.3 7.4e-27 94.6 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) PrkA PF06798.12 gi|20092385|ref|NP_618460.1| - 0.12 11.9 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain ABC_tran PF00005.27 gi|20092386|ref|NP_618461.1| - 5.3e-33 114.4 0.0 7.6e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092386|ref|NP_618461.1| - 1.3e-10 41.6 0.0 0.00035 20.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092386|ref|NP_618461.1| - 2.1e-08 33.9 0.1 4.3e-08 32.9 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20092386|ref|NP_618461.1| - 1.6e-05 24.8 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.6 gi|20092386|ref|NP_618461.1| - 9.7e-05 22.0 0.1 0.045 13.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|20092386|ref|NP_618461.1| - 0.0002 21.2 0.0 0.028 14.1 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|20092386|ref|NP_618461.1| - 0.00027 21.2 0.1 0.00052 20.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20092386|ref|NP_618461.1| - 0.00041 20.0 0.1 0.00071 19.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|20092386|ref|NP_618461.1| - 0.00047 20.7 0.1 0.0094 16.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20092386|ref|NP_618461.1| - 0.00056 20.2 0.1 0.0013 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092386|ref|NP_618461.1| - 0.0012 19.2 0.1 0.0024 18.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|20092386|ref|NP_618461.1| - 0.0019 18.8 0.2 0.003 18.1 0.2 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|20092386|ref|NP_618461.1| - 0.0019 18.4 0.1 0.056 13.7 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|20092386|ref|NP_618461.1| - 0.0065 16.4 0.0 0.02 14.8 0.0 1.8 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|20092386|ref|NP_618461.1| - 0.014 15.2 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|20092386|ref|NP_618461.1| - 0.014 15.3 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|20092386|ref|NP_618461.1| - 0.018 14.4 0.0 0.043 13.2 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family NTPase_1 PF03266.15 gi|20092386|ref|NP_618461.1| - 0.041 13.8 0.1 0.57 10.1 0.0 2.2 1 1 1 2 2 2 0 NTPase G-alpha PF00503.20 gi|20092386|ref|NP_618461.1| - 0.042 13.0 0.0 0.055 12.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF3584 PF12128.8 gi|20092386|ref|NP_618461.1| - 0.042 11.4 0.0 0.056 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ATPase PF06745.13 gi|20092386|ref|NP_618461.1| - 0.043 13.2 0.1 0.34 10.2 0.0 2.0 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|20092386|ref|NP_618461.1| - 0.05 12.8 0.1 0.089 12.0 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|20092386|ref|NP_618461.1| - 0.087 12.4 0.1 0.31 10.6 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|20092386|ref|NP_618461.1| - 0.087 13.0 0.3 0.18 12.0 0.3 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|20092386|ref|NP_618461.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|20092386|ref|NP_618461.1| - 0.14 12.3 0.4 0.43 10.7 0.4 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsX PF02687.21 gi|20092387|ref|NP_618462.1| - 1.9e-09 37.9 7.2 1.9e-09 37.9 7.2 2.8 3 0 0 3 3 3 1 FtsX-like permease family CARDB PF07705.11 gi|20092388|ref|NP_618463.1| - 7e-08 32.7 0.1 0.0023 18.2 0.0 2.7 3 0 0 3 3 3 2 CARDB NPCBM_assoc PF10633.9 gi|20092388|ref|NP_618463.1| - 0.038 14.2 0.0 13 6.2 0.0 3.5 3 1 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Filamin PF00630.19 gi|20092388|ref|NP_618463.1| - 0.054 14.3 0.0 0.22 12.4 0.0 2.0 2 0 0 2 2 2 0 Filamin/ABP280 repeat DUF4625 PF15418.6 gi|20092388|ref|NP_618463.1| - 0.057 13.7 0.9 0.18 12.1 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Rib PF08428.10 gi|20092388|ref|NP_618463.1| - 0.079 13.0 1.7 21 5.2 0.0 3.8 3 1 0 3 3 3 0 Rib/alpha-like repeat TetR_N PF00440.23 gi|20092389|ref|NP_618464.1| - 1e-14 54.1 0.0 2.1e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Terminase_5 PF06056.12 gi|20092389|ref|NP_618464.1| - 0.097 12.6 0.0 0.53 10.2 0.0 2.1 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HSP20 PF00011.21 gi|20092390|ref|NP_618465.1| - 1.1e-20 73.7 0.2 1.3e-20 73.4 0.2 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|20092390|ref|NP_618465.1| - 2.8e-11 42.8 0.0 3.7e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|20092390|ref|NP_618465.1| - 0.046 14.7 0.0 0.069 14.2 0.0 1.3 1 0 0 1 1 1 0 CS domain FKBP26_C PF18046.1 gi|20092390|ref|NP_618465.1| - 0.061 13.4 0.1 12 6.0 0.1 2.2 2 0 0 2 2 2 0 FKBP26_C-terminal MFS_1 PF07690.16 gi|20092391|ref|NP_618466.1| - 2.5e-62 210.9 45.3 1e-35 123.3 20.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|20092391|ref|NP_618466.1| - 4e-11 42.4 19.6 0.0002 20.4 4.2 3.1 1 1 2 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 gi|20092391|ref|NP_618466.1| - 1.6e-09 37.1 34.0 1.6e-06 27.3 10.8 4.0 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|20092391|ref|NP_618466.1| - 0.0025 16.3 16.3 0.0039 15.6 16.3 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector zf-RRN7 PF11781.8 gi|20092391|ref|NP_618466.1| - 0.23 11.2 0.9 0.41 10.4 0.9 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 AMMECR1 PF01871.17 gi|20092392|ref|NP_618467.1| - 1.1e-48 165.1 0.0 1.2e-48 164.9 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 HAP2-GCS1 PF10699.9 gi|20092392|ref|NP_618467.1| - 0.0067 16.4 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Male gamete fusion factor PGK PF00162.19 gi|20092393|ref|NP_618468.1| - 1.7e-108 363.0 0.9 1.9e-108 362.8 0.9 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase UDG PF03167.19 gi|20092394|ref|NP_618469.1| - 1.1e-39 136.0 0.0 1.3e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HSP20 PF00011.21 gi|20092395|ref|NP_618470.1| - 4.6e-06 26.7 0.8 5.8e-05 23.2 0.8 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family Fer4 PF00037.27 gi|20092396|ref|NP_618471.1| - 8.5e-12 44.4 14.7 7.3e-08 31.9 6.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092396|ref|NP_618471.1| - 2.5e-11 43.5 8.9 3.2e-11 43.2 8.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092396|ref|NP_618471.1| - 4.7e-11 42.3 13.1 7.8e-06 25.7 5.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092396|ref|NP_618471.1| - 2.1e-09 37.8 10.7 2.8e-09 37.4 10.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092396|ref|NP_618471.1| - 2.1e-09 36.9 12.1 4.2e-05 23.4 4.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20092396|ref|NP_618471.1| - 2.7e-09 37.1 8.8 3.2e-09 36.8 8.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092396|ref|NP_618471.1| - 1.1e-06 28.7 11.0 2.1e-06 27.8 11.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092396|ref|NP_618471.1| - 1.5e-06 29.0 9.0 0.00022 22.1 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|20092396|ref|NP_618471.1| - 2.5e-05 24.4 9.9 0.0011 19.4 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|20092396|ref|NP_618471.1| - 4.2e-05 23.6 5.0 4.8e-05 23.4 5.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|20092396|ref|NP_618471.1| - 0.00012 22.5 14.1 0.0022 18.5 14.1 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20092396|ref|NP_618471.1| - 0.00013 22.7 13.6 0.0054 17.6 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20092396|ref|NP_618471.1| - 0.00016 22.2 10.8 0.001 19.6 3.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20092396|ref|NP_618471.1| - 0.001 19.5 11.7 0.12 12.9 5.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20092396|ref|NP_618471.1| - 0.0018 19.0 10.9 0.35 11.6 10.9 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|20092396|ref|NP_618471.1| - 0.029 14.5 10.0 1.3 9.2 10.0 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Rep_fac-A_C PF08646.10 gi|20092396|ref|NP_618471.1| - 0.16 11.7 4.0 0.16 11.7 4.0 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Fer4_22 PF17179.4 gi|20092396|ref|NP_618471.1| - 0.6 11.0 7.0 1.9 9.4 2.0 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Toxin_2 PF00451.19 gi|20092396|ref|NP_618471.1| - 0.95 9.8 8.2 1.6 9.1 0.2 2.2 2 0 0 2 2 2 0 Scorpion short toxin, BmKK2 Fer4 PF00037.27 gi|20092397|ref|NP_618472.1| - 1.5e-12 46.7 13.4 6.5e-08 32.1 5.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092397|ref|NP_618472.1| - 1.3e-11 44.9 16.2 2e-09 37.9 9.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092397|ref|NP_618472.1| - 1.7e-10 40.9 8.8 2.6e-10 40.2 8.8 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092397|ref|NP_618472.1| - 4.1e-10 39.3 12.9 6.5e-05 22.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20092397|ref|NP_618472.1| - 2e-09 37.5 6.9 2.5e-09 37.1 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092397|ref|NP_618472.1| - 1e-08 35.2 8.7 2.2e-08 34.1 8.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092397|ref|NP_618472.1| - 3.3e-08 34.3 5.6 4.8e-05 24.2 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|20092397|ref|NP_618472.1| - 6.1e-08 32.3 11.5 0.00087 19.2 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20092397|ref|NP_618472.1| - 2e-05 24.7 13.7 0.00043 20.6 4.9 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20092397|ref|NP_618472.1| - 4.3e-05 24.0 8.8 0.0041 17.6 3.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20092397|ref|NP_618472.1| - 8.2e-05 23.3 12.1 0.00046 20.9 3.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092397|ref|NP_618472.1| - 0.00071 20.0 9.8 0.095 13.2 4.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20092397|ref|NP_618472.1| - 0.0011 19.8 3.5 1 10.3 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20092397|ref|NP_618472.1| - 0.0015 19.0 12.8 0.0045 17.5 12.8 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|20092397|ref|NP_618472.1| - 0.0015 18.7 9.7 0.005 17.0 3.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|20092397|ref|NP_618472.1| - 0.02 15.0 1.4 0.024 14.8 1.4 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|20092397|ref|NP_618472.1| - 0.2 12.4 13.0 9.6 7.0 13.0 2.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Toxin_2 PF00451.19 gi|20092397|ref|NP_618472.1| - 0.56 10.5 0.3 0.56 10.5 0.3 2.2 2 0 0 2 2 2 0 Scorpion short toxin, BmKK2 HTH_20 PF12840.7 gi|20092398|ref|NP_618473.1| - 2.4e-13 49.9 0.1 7.1e-13 48.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20092398|ref|NP_618473.1| - 1.7e-05 24.6 0.4 3.5e-05 23.6 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20092398|ref|NP_618473.1| - 0.00028 20.7 0.1 0.00065 19.5 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20092398|ref|NP_618473.1| - 0.00063 19.3 0.4 0.0018 17.8 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|20092398|ref|NP_618473.1| - 0.0086 16.0 0.6 0.033 14.2 0.4 1.9 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|20092398|ref|NP_618473.1| - 0.0099 15.7 0.4 0.026 14.4 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|20092398|ref|NP_618473.1| - 0.012 15.5 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|20092398|ref|NP_618473.1| - 0.023 14.6 0.1 0.079 12.9 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|20092398|ref|NP_618473.1| - 0.042 13.7 0.1 0.067 13.1 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|20092398|ref|NP_618473.1| - 0.076 13.4 0.4 0.16 12.4 0.4 1.4 1 0 0 1 1 1 0 Transcriptional regulator Methyltr_RsmF_N PF17125.5 gi|20092398|ref|NP_618473.1| - 0.081 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF HTH_30 PF13556.6 gi|20092398|ref|NP_618473.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR PF01047.22 gi|20092398|ref|NP_618473.1| - 0.13 12.3 0.3 0.26 11.3 0.3 1.5 1 0 0 1 1 1 0 MarR family ArsR PF09824.9 gi|20092398|ref|NP_618473.1| - 0.13 11.9 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator OPA3 PF07047.12 gi|20092398|ref|NP_618473.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) S-layer PF07752.11 gi|20092399|ref|NP_618474.1| - 3.4e-73 245.9 7.7 1.2e-37 129.4 0.6 2.1 2 0 0 2 2 2 2 S-layer protein Calycin_like PF13944.6 gi|20092399|ref|NP_618474.1| - 0.072 13.4 5.5 0.48 10.8 0.1 3.2 3 0 0 3 3 3 0 Calycin-like beta-barrel domain Imm53 PF15580.6 gi|20092399|ref|NP_618474.1| - 0.088 12.5 5.7 2.9 7.6 0.5 2.4 2 0 0 2 2 2 0 Immunity protein 53 NdhO PF11910.8 gi|20092399|ref|NP_618474.1| - 0.13 12.4 0.0 7.8 6.7 0.0 2.6 2 0 0 2 2 2 0 Cyanobacterial and plant NDH-1 subunit O tRNA_bind_4 PF18490.1 gi|20092399|ref|NP_618474.1| - 0.13 12.0 0.2 5.5 6.7 0.0 2.2 2 0 0 2 2 2 0 tRNA-binding domain Chibby PF14645.6 gi|20092399|ref|NP_618474.1| - 0.42 11.0 1.4 4.9 7.6 0.1 2.7 3 0 0 3 3 3 0 Chibby family HEAT_2 PF13646.6 gi|20092400|ref|NP_618475.1| - 3e-78 258.3 15.4 1.1e-20 73.8 0.4 7.1 2 2 4 7 7 7 6 HEAT repeats HEAT_PBS PF03130.16 gi|20092400|ref|NP_618475.1| - 5.5e-52 169.2 21.0 1.6e-05 25.1 0.1 12.0 11 1 0 11 11 11 11 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20092400|ref|NP_618475.1| - 4.1e-37 123.0 2.5 0.00015 21.8 0.0 11.3 13 0 0 13 13 12 6 HEAT repeat HEAT_EZ PF13513.6 gi|20092400|ref|NP_618475.1| - 1.5e-32 111.6 11.1 0.0018 18.8 0.0 10.0 9 1 0 9 9 9 7 HEAT-like repeat Arm PF00514.23 gi|20092400|ref|NP_618475.1| - 4.9e-21 74.0 0.5 0.3 11.2 0.0 10.6 9 2 3 12 12 12 6 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|20092400|ref|NP_618475.1| - 1.8e-13 50.9 0.1 0.0044 17.1 0.0 6.3 3 2 3 6 6 6 4 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|20092400|ref|NP_618475.1| - 4.2e-08 32.2 0.0 3.4e-05 22.6 0.0 2.6 2 1 1 3 3 3 2 Adaptin N terminal region ERAP1_C PF11838.8 gi|20092400|ref|NP_618475.1| - 4.4e-06 26.5 0.1 0.0049 16.5 0.0 3.4 2 2 2 4 4 4 1 ERAP1-like C-terminal domain Vac14_Fab1_bd PF12755.7 gi|20092400|ref|NP_618475.1| - 3.8e-05 24.2 0.0 92 3.7 0.0 6.6 3 2 5 8 8 8 0 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.8 gi|20092400|ref|NP_618475.1| - 0.00013 22.1 0.4 33 4.5 0.0 5.7 5 1 2 7 7 6 0 Aconitate B N-terminal domain Vitellogenin_N PF01347.22 gi|20092400|ref|NP_618475.1| - 0.00038 19.0 0.0 2.9 6.2 0.0 3.9 3 1 1 4 4 4 2 Lipoprotein amino terminal region CLASP_N PF12348.8 gi|20092400|ref|NP_618475.1| - 0.005 16.4 0.0 13 5.3 0.0 3.5 3 0 0 3 3 3 0 CLASP N terminal Cohesin_HEAT PF12765.7 gi|20092400|ref|NP_618475.1| - 0.0066 16.7 0.2 4.5 7.7 0.1 3.0 2 0 0 2 2 2 1 HEAT repeat associated with sister chromatid cohesion RasGEF_N_2 PF14663.6 gi|20092400|ref|NP_618475.1| - 0.027 14.9 0.0 1.3e+02 3.1 0.0 4.9 2 2 4 6 6 6 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain DUF1641 PF07849.11 gi|20092400|ref|NP_618475.1| - 0.46 10.4 4.9 1.1e+02 2.8 0.0 5.4 6 0 0 6 6 6 0 Protein of unknown function (DUF1641) MarR_2 PF12802.7 gi|20092402|ref|NP_618477.1| - 0.00034 20.4 0.0 0.0011 18.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|20092402|ref|NP_618477.1| - 0.0041 16.7 0.3 0.0067 16.0 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|20092402|ref|NP_618477.1| - 0.0055 16.6 0.0 0.0092 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|20092402|ref|NP_618477.1| - 0.0067 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|20092402|ref|NP_618477.1| - 0.0096 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|20092402|ref|NP_618477.1| - 0.12 12.2 0.4 0.21 11.5 0.4 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit ATP-grasp_5 PF13549.6 gi|20092403|ref|NP_618478.1| - 1.1e-77 260.5 0.1 1.2e-77 260.3 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|20092403|ref|NP_618478.1| - 0.00067 19.3 0.3 0.0018 17.9 0.3 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|20092403|ref|NP_618478.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain RAP PF08373.10 gi|20092404|ref|NP_618479.1| - 0.015 15.4 0.0 0.43 10.7 0.0 2.2 2 0 0 2 2 2 0 RAP domain Peptidase_M14 PF00246.24 gi|20092405|ref|NP_618480.1| - 2.2e-77 260.7 0.1 2.6e-77 260.5 0.1 1.1 1 0 0 1 1 1 1 Zinc carboxypeptidase Acetate_kinase PF00871.17 gi|20092406|ref|NP_618481.1| - 1.1e-160 534.7 0.5 1.2e-160 534.5 0.5 1.0 1 0 0 1 1 1 1 Acetokinase family PTA_PTB PF01515.19 gi|20092407|ref|NP_618482.1| - 1e-129 432.4 5.2 1.2e-129 432.3 5.2 1.0 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase DUF3663 PF12404.8 gi|20092407|ref|NP_618482.1| - 0.04 14.0 0.2 0.096 12.7 0.1 1.7 2 0 0 2 2 2 0 Peptidase FMN_red PF03358.15 gi|20092408|ref|NP_618483.1| - 2.3e-40 137.9 0.0 3e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20092408|ref|NP_618483.1| - 4.8e-14 52.5 0.0 6.1e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|20092408|ref|NP_618483.1| - 0.0067 16.6 0.0 0.032 14.4 0.0 1.9 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|20092408|ref|NP_618483.1| - 0.0077 16.5 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Voltage_CLC PF00654.20 gi|20092409|ref|NP_618484.1| - 4.7e-88 295.8 37.5 2.3e-87 293.5 34.3 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|20092409|ref|NP_618484.1| - 2.6e-22 79.0 0.6 2.9e-10 40.4 0.1 2.5 2 0 0 2 2 2 2 CBS domain AHSA1 PF08327.11 gi|20092410|ref|NP_618485.1| - 1.6e-25 89.7 0.2 1.9e-25 89.5 0.2 1.0 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|20092410|ref|NP_618485.1| - 0.0014 18.9 0.0 0.0018 18.6 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Abhydrolase_1 PF00561.20 gi|20092411|ref|NP_618486.1| - 3.3e-15 56.5 0.1 8.5e-15 55.1 0.0 1.6 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|20092411|ref|NP_618486.1| - 1.3e-13 52.1 0.8 1.6e-13 51.8 0.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|20092411|ref|NP_618486.1| - 1e-09 38.1 0.3 1.2e-08 34.5 0.3 2.0 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|20092411|ref|NP_618486.1| - 1.2e-08 35.3 0.0 1.5e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Ndr PF03096.14 gi|20092411|ref|NP_618486.1| - 1.2e-05 24.2 0.0 1.7e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Ndr family Esterase PF00756.20 gi|20092411|ref|NP_618486.1| - 0.036 13.7 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative esterase HEAT_2 PF13646.6 gi|20092412|ref|NP_618487.1| - 4.3e-115 376.4 46.5 4.8e-17 62.1 0.4 9.4 1 1 10 11 11 11 11 HEAT repeats HEAT_PBS PF03130.16 gi|20092412|ref|NP_618487.1| - 1.7e-64 208.0 41.8 0.00053 20.4 0.0 19.1 19 0 0 19 19 19 11 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20092412|ref|NP_618487.1| - 2.5e-52 170.3 8.4 0.00029 20.8 0.0 17.0 17 0 0 17 17 17 11 HEAT repeat HEAT_EZ PF13513.6 gi|20092412|ref|NP_618487.1| - 4.1e-29 100.6 25.5 0.013 15.9 0.0 14.6 11 5 5 16 16 16 9 HEAT-like repeat Cnd1 PF12717.7 gi|20092412|ref|NP_618487.1| - 5e-18 65.7 6.0 0.03 14.4 0.0 8.7 3 1 3 8 8 8 6 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|20092412|ref|NP_618487.1| - 4.1e-14 52.0 0.1 0.92 9.7 0.0 12.0 14 1 1 15 15 13 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|20092412|ref|NP_618487.1| - 4.2e-14 52.0 0.5 0.00045 18.9 0.0 6.2 2 1 1 6 6 6 4 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|20092412|ref|NP_618487.1| - 2e-12 47.5 0.0 11 6.7 0.0 10.3 5 3 6 11 11 11 0 Vacuolar 14 Fab1-binding region RTP1_C1 PF10363.9 gi|20092412|ref|NP_618487.1| - 2.3e-12 47.1 0.0 0.084 13.1 0.0 6.4 2 2 4 6 6 6 3 Required for nuclear transport of RNA pol II C-terminus 1 NACHT PF05729.12 gi|20092412|ref|NP_618487.1| - 3.8e-11 43.2 0.0 8e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 NACHT domain Aconitase_B_N PF11791.8 gi|20092412|ref|NP_618487.1| - 2.9e-07 30.7 9.5 2.2 8.3 0.0 7.7 5 2 3 9 9 9 1 Aconitate B N-terminal domain RasGEF_N_2 PF14663.6 gi|20092412|ref|NP_618487.1| - 1.2e-05 25.6 2.6 6 7.3 0.1 6.9 5 1 3 8 8 8 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain Vitellogenin_N PF01347.22 gi|20092412|ref|NP_618487.1| - 0.00021 19.8 0.1 1 7.7 0.0 3.8 3 2 0 3 3 3 2 Lipoprotein amino terminal region API5 PF05918.11 gi|20092412|ref|NP_618487.1| - 0.00027 19.9 2.4 0.19 10.5 0.2 3.4 3 0 0 3 3 3 1 Apoptosis inhibitory protein 5 (API5) DNA_alkylation PF08713.11 gi|20092412|ref|NP_618487.1| - 0.0018 18.1 4.3 4.3 7.0 0.1 4.2 3 1 0 3 3 3 1 DNA alkylation repair enzyme AAA_22 PF13401.6 gi|20092412|ref|NP_618487.1| - 0.0032 17.8 0.1 0.015 15.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF3385 PF11865.8 gi|20092412|ref|NP_618487.1| - 0.0073 16.2 0.0 37 4.2 0.0 5.2 4 2 2 6 6 5 0 Domain of unknown function (DUF3385) AAA_16 PF13191.6 gi|20092412|ref|NP_618487.1| - 0.016 15.6 0.7 0.21 12.0 0.0 3.1 2 1 1 3 3 3 0 AAA ATPase domain DAP3 PF10236.9 gi|20092412|ref|NP_618487.1| - 0.027 13.6 0.2 0.31 10.2 0.0 2.9 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 AAA_7 PF12775.7 gi|20092412|ref|NP_618487.1| - 0.034 13.7 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Pox_A32 PF04665.12 gi|20092412|ref|NP_618487.1| - 0.039 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_30 PF13604.6 gi|20092412|ref|NP_618487.1| - 0.043 13.5 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain HTH_8 PF02954.19 gi|20092412|ref|NP_618487.1| - 0.049 13.4 6.9 26 4.7 0.1 5.6 5 0 0 5 5 5 0 Bacterial regulatory protein, Fis family ABC_tran PF00005.27 gi|20092412|ref|NP_618487.1| - 0.13 12.7 0.0 0.51 10.9 0.0 2.0 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|20092412|ref|NP_618487.1| - 0.15 11.8 0.1 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain URO-D PF01208.17 gi|20092413|ref|NP_618488.1| - 2.6e-81 273.5 0.0 2.9e-81 273.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF357 PF04010.13 gi|20092413|ref|NP_618488.1| - 0.08 13.0 0.0 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF357) ThiI PF02568.14 gi|20092414|ref|NP_618489.1| - 8.6e-05 22.2 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|20092414|ref|NP_618489.1| - 0.031 13.4 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|20092414|ref|NP_618489.1| - 0.05 12.4 0.0 0.076 11.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase SurA_N PF09312.11 gi|20092414|ref|NP_618489.1| - 0.06 13.4 0.2 0.11 12.6 0.2 1.5 1 0 0 1 1 1 0 SurA N-terminal domain ATP_bind_3 PF01171.20 gi|20092414|ref|NP_618489.1| - 0.088 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 PP-loop family DUF166 PF02593.14 gi|20092414|ref|NP_618489.1| - 0.097 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function QueC PF06508.13 gi|20092414|ref|NP_618489.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Exo_endo_phos_2 PF14529.6 gi|20092415|ref|NP_618490.1| - 0.00079 19.3 0.3 0.0016 18.3 0.1 1.7 2 1 0 2 2 2 1 Endonuclease-reverse transcriptase Exo_endo_phos PF03372.23 gi|20092415|ref|NP_618490.1| - 0.011 15.2 0.1 0.024 14.2 0.1 1.7 1 1 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family PET122 PF05476.11 gi|20092416|ref|NP_618491.1| - 0.038 13.3 0.3 0.047 13.0 0.3 1.1 1 0 0 1 1 1 0 PET122 Cupin_2 PF07883.11 gi|20092417|ref|NP_618492.1| - 1.3e-18 66.4 0.0 2.1e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|20092417|ref|NP_618492.1| - 9e-08 32.1 0.1 1.4e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|20092417|ref|NP_618492.1| - 1.3e-05 25.1 0.0 1.6e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|20092417|ref|NP_618492.1| - 2e-05 24.3 0.0 2.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|20092417|ref|NP_618492.1| - 0.00077 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) GPI PF06560.11 gi|20092417|ref|NP_618492.1| - 0.002 17.4 0.0 0.0027 17.0 0.0 1.2 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Auxin_BP PF02041.16 gi|20092417|ref|NP_618492.1| - 0.007 16.0 0.0 0.019 14.6 0.0 1.6 1 1 0 1 1 1 1 Auxin binding protein DMSP_lyase PF16867.5 gi|20092417|ref|NP_618492.1| - 0.13 11.9 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase MC1 PF05854.11 gi|20092419|ref|NP_618494.1| - 1.4e-39 134.3 0.9 1.6e-39 134.1 0.9 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 PHP_C PF13263.6 gi|20092421|ref|NP_618496.1| - 2.6e-21 75.1 0.1 6e-21 74.0 0.1 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|20092421|ref|NP_618496.1| - 8.1e-10 39.2 0.0 4.4e-09 36.9 0.0 2.0 1 1 0 1 1 1 1 PHP domain MMR_HSR1 PF01926.23 gi|20092422|ref|NP_618497.1| - 2.5e-20 72.7 0.0 5.2e-20 71.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|20092422|ref|NP_618497.1| - 5.9e-14 52.4 2.2 1e-13 51.7 2.2 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|20092422|ref|NP_618497.1| - 6.8e-09 36.3 0.2 1.7e-08 35.0 0.2 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal RsgA_GTPase PF03193.16 gi|20092422|ref|NP_618497.1| - 9e-09 35.4 0.1 0.0014 18.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|20092422|ref|NP_618497.1| - 1.8e-07 31.1 0.0 3.4e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|20092422|ref|NP_618497.1| - 2.9e-06 26.9 0.0 0.0013 18.3 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain FeoB_N PF02421.18 gi|20092422|ref|NP_618497.1| - 5.2e-05 22.8 0.3 0.00052 19.6 0.3 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B cobW PF02492.19 gi|20092422|ref|NP_618497.1| - 0.00014 21.5 0.5 0.017 14.7 0.1 2.8 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain NOG1 PF06858.14 gi|20092422|ref|NP_618497.1| - 0.0046 16.7 0.7 0.032 14.0 0.1 2.6 3 0 0 3 3 2 1 Nucleolar GTP-binding protein 1 (NOG1) Dynamin_N PF00350.23 gi|20092422|ref|NP_618497.1| - 0.0098 16.0 0.2 0.037 14.1 0.0 2.0 2 1 1 3 3 3 1 Dynamin family MnmE_helical PF12631.7 gi|20092422|ref|NP_618497.1| - 0.013 15.7 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain Arf PF00025.21 gi|20092422|ref|NP_618497.1| - 0.016 14.6 0.1 0.051 13.0 0.1 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|20092422|ref|NP_618497.1| - 0.059 13.1 0.0 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|20092422|ref|NP_618497.1| - 0.059 13.9 0.0 0.17 12.4 0.0 1.9 1 1 1 2 2 2 0 ABC transporter Fzo_mitofusin PF04799.13 gi|20092422|ref|NP_618497.1| - 0.094 12.3 0.2 0.78 9.3 0.0 2.1 1 1 1 2 2 2 0 fzo-like conserved region ATP_bind_1 PF03029.17 gi|20092422|ref|NP_618497.1| - 0.18 11.6 0.1 0.83 9.4 0.0 2.0 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein BTRD1 PF17660.1 gi|20092422|ref|NP_618497.1| - 0.2 11.5 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 AAA_23 PF13476.6 gi|20092422|ref|NP_618497.1| - 0.95 9.9 6.3 0.88 10.0 0.2 2.3 1 1 1 2 2 2 0 AAA domain DUF2209 PF09974.9 gi|20092423|ref|NP_618498.1| - 8.9e-54 181.0 0.0 1e-53 180.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DUF1848 PF08902.11 gi|20092423|ref|NP_618498.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) tRNA_int_endo PF01974.17 gi|20092424|ref|NP_618499.1| - 1.8e-48 162.5 2.4 1.8e-25 88.8 0.5 2.3 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|20092424|ref|NP_618499.1| - 6.9e-42 141.0 1.9 5.3e-20 70.8 0.0 2.6 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain HHH_6 PF14579.6 gi|20092425|ref|NP_618500.1| - 0.017 15.3 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif GATase_3 PF07685.14 gi|20092426|ref|NP_618501.1| - 7.9e-44 149.6 0.0 1.2e-43 149.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|20092426|ref|NP_618501.1| - 5.6e-19 68.7 0.0 6.9e-17 61.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|20092426|ref|NP_618501.1| - 4.4e-18 65.6 0.0 6.9e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|20092426|ref|NP_618501.1| - 0.035 14.0 0.0 0.082 12.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2620 PF10941.8 gi|20092426|ref|NP_618501.1| - 0.041 14.0 0.1 0.08 13.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF2620 MipZ PF09140.11 gi|20092426|ref|NP_618501.1| - 0.17 11.1 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ Fer4_NifH PF00142.18 gi|20092427|ref|NP_618502.1| - 1.7e-89 299.9 2.3 2e-89 299.6 2.3 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|20092427|ref|NP_618502.1| - 3.4e-11 43.3 0.0 5.6e-11 42.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20092427|ref|NP_618502.1| - 2.6e-10 40.2 0.8 1.7e-09 37.5 0.8 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|20092427|ref|NP_618502.1| - 2.4e-09 37.4 1.2 3.3e-09 36.9 0.1 1.7 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|20092427|ref|NP_618502.1| - 2.7e-08 33.4 1.5 3.9e-07 29.5 0.8 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|20092427|ref|NP_618502.1| - 3.6e-05 23.6 0.0 7.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|20092427|ref|NP_618502.1| - 7e-05 22.2 0.2 0.0044 16.4 0.0 2.5 3 0 0 3 3 3 1 ATPase MipZ MeaB PF03308.16 gi|20092427|ref|NP_618502.1| - 0.0002 20.5 0.2 0.0003 19.9 0.2 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|20092427|ref|NP_618502.1| - 0.0054 16.4 0.2 0.0095 15.6 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|20092427|ref|NP_618502.1| - 0.0097 16.3 0.0 0.02 15.3 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|20092427|ref|NP_618502.1| - 0.016 14.8 0.1 0.028 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|20092427|ref|NP_618502.1| - 0.054 13.3 0.3 0.54 10.0 0.3 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|20092427|ref|NP_618502.1| - 0.057 12.6 0.3 0.1 11.8 0.3 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|20092427|ref|NP_618502.1| - 0.065 13.5 0.1 0.17 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|20092427|ref|NP_618502.1| - 0.086 12.6 0.1 0.33 10.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|20092427|ref|NP_618502.1| - 0.12 12.7 0.1 0.58 10.6 0.0 2.2 2 1 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.17 gi|20092427|ref|NP_618502.1| - 0.23 11.2 0.5 0.38 10.5 0.5 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Oxidored_nitro PF00148.19 gi|20092428|ref|NP_618503.1| - 2.3e-17 62.8 0.0 4.5e-17 61.9 0.0 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase GvpG PF05120.12 gi|20092428|ref|NP_618503.1| - 0.0002 21.3 0.1 0.00038 20.4 0.1 1.4 1 0 0 1 1 1 1 Gas vesicle protein G SHOCT PF09851.9 gi|20092428|ref|NP_618503.1| - 0.096 12.5 0.4 0.21 11.3 0.4 1.6 1 0 0 1 1 1 0 Short C-terminal domain Mur_ligase_M PF08245.12 gi|20092430|ref|NP_618505.1| - 0.0002 21.4 0.0 0.00066 19.7 0.0 1.8 1 1 0 1 1 1 1 Mur ligase middle domain CbiX PF01903.17 gi|20092431|ref|NP_618506.1| - 1.5e-28 99.3 0.0 1.7e-28 99.1 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|20092431|ref|NP_618506.1| - 1e-07 31.6 0.0 1.2e-07 31.3 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|20092431|ref|NP_618506.1| - 0.014 14.5 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase E1-E2_ATPase PF00122.20 gi|20092432|ref|NP_618507.1| - 1.6e-50 171.2 0.7 1.6e-50 171.2 0.7 2.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|20092432|ref|NP_618507.1| - 7.4e-47 160.3 0.3 7.4e-47 160.3 0.3 1.9 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|20092432|ref|NP_618507.1| - 3.5e-07 30.2 0.1 0.0025 17.6 0.0 2.7 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20092432|ref|NP_618507.1| - 6.7e-06 26.6 0.0 5.9e-05 23.5 0.0 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|20092432|ref|NP_618507.1| - 0.0091 16.1 0.3 0.031 14.4 0.3 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF1056 PF06341.11 gi|20092432|ref|NP_618507.1| - 0.32 11.3 2.4 0.96 9.8 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) Transglut_core PF01841.19 gi|20092433|ref|NP_618508.1| - 3.9e-09 36.9 0.4 1.3e-08 35.3 0.4 1.8 1 1 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C71 PF12386.8 gi|20092433|ref|NP_618508.1| - 0.00074 19.2 0.8 0.0012 18.5 0.8 1.3 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.12 gi|20092433|ref|NP_618508.1| - 0.0041 16.6 1.9 0.019 14.5 1.9 1.9 1 1 0 1 1 1 1 Transglutaminase-like domain Abhydrolase_1 PF00561.20 gi|20092435|ref|NP_618510.1| - 1.4e-19 70.8 0.0 4.3e-18 65.9 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|20092435|ref|NP_618510.1| - 2.2e-16 61.1 0.9 2.6e-16 60.9 0.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|20092435|ref|NP_618510.1| - 1.8e-08 34.0 0.0 3.1e-08 33.2 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 ScsC_N PF18312.1 gi|20092435|ref|NP_618510.1| - 0.13 12.1 1.6 23 4.9 0.3 3.1 3 0 0 3 3 3 0 Copper resistance protein ScsC N-terminal domain Ndr PF03096.14 gi|20092435|ref|NP_618510.1| - 0.15 10.7 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF573 PF04504.14 gi|20092436|ref|NP_618511.1| - 0.022 15.4 0.7 0.079 13.6 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF573 CTNNBL PF08216.11 gi|20092436|ref|NP_618511.1| - 0.16 12.1 2.5 2 8.6 0.2 2.2 1 1 1 2 2 2 0 Catenin-beta-like, Arm-motif containing nuclear Neurexophilin PF06312.12 gi|20092437|ref|NP_618512.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Neurexophilin Acyl_transf_3 PF01757.22 gi|20092438|ref|NP_618513.1| - 8.6e-25 87.5 39.9 1.3e-23 83.6 39.9 2.0 1 1 0 1 1 1 1 Acyltransferase family CCB1 PF12046.8 gi|20092438|ref|NP_618513.1| - 1.4 8.3 6.5 4.6 6.5 6.5 1.8 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B S-layer PF07752.11 gi|20092439|ref|NP_618514.1| - 6.9e-131 434.9 24.2 2.1e-66 223.7 7.9 2.3 2 0 0 2 2 2 2 S-layer protein Cthe_2159 PF14262.6 gi|20092439|ref|NP_618514.1| - 0.0027 17.1 0.0 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 Carbohydrate-binding domain-containing protein Cthe_2159 TbpB_B_D PF01298.18 gi|20092439|ref|NP_618514.1| - 0.056 13.8 0.1 14 6.1 0.0 2.6 2 0 0 2 2 2 0 C-lobe and N-lobe beta barrels of Tf-binding protein B Phage_sheath_1N PF17481.2 gi|20092439|ref|NP_618514.1| - 0.058 13.9 0.5 14 6.2 0.1 2.8 2 0 0 2 2 2 0 Phage tail sheath protein beta-sandwich domain JmjC PF02373.22 gi|20092439|ref|NP_618514.1| - 0.065 13.7 0.0 26 5.3 0.0 3.0 2 0 0 2 2 2 0 JmjC domain, hydroxylase Cucumopine_C PF18631.1 gi|20092439|ref|NP_618514.1| - 0.069 13.1 0.0 4.6 7.2 0.0 2.3 2 0 0 2 2 2 0 Cucumopine synthase C-terminal helical bundle domain Phasin PF05597.11 gi|20092439|ref|NP_618514.1| - 0.13 12.3 0.3 17 5.5 0.1 2.4 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF3922 PF13059.6 gi|20092439|ref|NP_618514.1| - 1.1 9.8 5.8 3.4 8.2 0.7 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3992) Peripla_BP_2 PF01497.18 gi|20092440|ref|NP_618515.1| - 2.1e-23 83.1 0.0 2.8e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|20092441|ref|NP_618516.1| - 9.4e-91 304.0 30.4 1.1e-90 303.9 30.4 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20092441|ref|NP_618516.1| - 4.1e-06 26.5 13.6 4.1e-06 26.5 13.6 2.0 1 1 1 2 2 2 1 ABC 3 transport family YobH PF13996.6 gi|20092441|ref|NP_618516.1| - 0.017 15.2 1.2 0.12 12.4 0.8 2.5 1 1 1 2 2 2 0 YobH-like protein BofA PF07441.11 gi|20092441|ref|NP_618516.1| - 0.046 13.9 1.0 0.046 13.9 1.0 4.6 4 1 0 5 5 5 0 SigmaK-factor processing regulatory protein BofA DUF1449 PF07290.11 gi|20092441|ref|NP_618516.1| - 1.6 8.4 9.4 2.3 7.8 1.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1449) ABC_tran PF00005.27 gi|20092442|ref|NP_618517.1| - 4.5e-30 105.0 0.0 6e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092442|ref|NP_618517.1| - 1e-09 38.7 3.9 0.00013 21.9 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20092442|ref|NP_618517.1| - 2.6e-07 30.7 0.3 0.0001 22.2 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|20092442|ref|NP_618517.1| - 1.2e-05 25.9 0.5 1.9e-05 25.3 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20092442|ref|NP_618517.1| - 6e-05 22.7 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|20092442|ref|NP_618517.1| - 9.6e-05 21.9 0.4 0.015 14.7 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20092442|ref|NP_618517.1| - 0.00021 21.2 0.1 0.00044 20.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|20092442|ref|NP_618517.1| - 0.00049 20.5 0.0 0.00068 20.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20092442|ref|NP_618517.1| - 0.00063 20.0 0.6 0.0031 17.8 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|20092442|ref|NP_618517.1| - 0.0023 17.9 0.1 0.038 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|20092442|ref|NP_618517.1| - 0.0027 17.1 0.0 0.0054 16.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|20092442|ref|NP_618517.1| - 0.0049 16.8 0.1 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|20092442|ref|NP_618517.1| - 0.011 15.4 0.1 0.035 13.7 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|20092442|ref|NP_618517.1| - 0.012 16.0 0.3 0.2 12.0 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|20092442|ref|NP_618517.1| - 0.012 15.6 0.0 0.45 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|20092442|ref|NP_618517.1| - 0.014 15.3 0.3 0.041 13.8 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|20092442|ref|NP_618517.1| - 0.025 13.8 0.0 0.17 11.1 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|20092442|ref|NP_618517.1| - 0.027 14.2 0.0 0.054 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|20092442|ref|NP_618517.1| - 0.028 14.2 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|20092442|ref|NP_618517.1| - 0.032 13.0 0.2 7.2 5.3 0.1 3.0 2 2 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|20092442|ref|NP_618517.1| - 0.063 13.0 0.0 0.16 11.7 0.0 1.8 1 1 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|20092442|ref|NP_618517.1| - 0.066 12.3 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_27 PF13514.6 gi|20092442|ref|NP_618517.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|20092442|ref|NP_618517.1| - 0.14 11.6 0.0 0.31 10.4 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|20092442|ref|NP_618517.1| - 0.14 12.0 0.4 0.26 11.2 0.1 1.6 2 0 0 2 2 2 0 NACHT domain HSM3_N PF18795.1 gi|20092442|ref|NP_618517.1| - 0.2 11.1 2.4 0.11 11.9 0.3 1.7 2 0 0 2 2 2 0 DNA mismatch repair protein HSM3, N terminal domain AAA_13 PF13166.6 gi|20092442|ref|NP_618517.1| - 0.28 9.8 0.0 11 4.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Cupin_2 PF07883.11 gi|20092443|ref|NP_618518.1| - 5e-15 55.0 0.0 6.7e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|20092443|ref|NP_618518.1| - 0.0014 18.6 0.0 0.0018 18.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|20092443|ref|NP_618518.1| - 0.0023 18.1 0.0 0.0031 17.7 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|20092443|ref|NP_618518.1| - 0.059 13.3 0.1 0.071 13.0 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|20092443|ref|NP_618518.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ RVT_1 PF00078.27 gi|20092445|ref|NP_618520.1| - 2.1e-38 132.1 0.0 4.5e-38 131.0 0.0 1.6 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|20092445|ref|NP_618520.1| - 1.5e-27 95.6 3.4 3.9e-27 94.3 3.4 1.7 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|20092445|ref|NP_618520.1| - 2.8e-23 81.7 4.9 9.5e-23 80.1 4.9 2.0 1 0 0 1 1 1 1 Group II intron, maturase-specific domain Menin PF05053.13 gi|20092445|ref|NP_618520.1| - 0.073 11.4 0.1 0.14 10.5 0.1 1.3 1 0 0 1 1 1 0 Menin Transposase_20 PF02371.16 gi|20092446|ref|NP_618521.1| - 1.3e-29 102.3 0.0 3.2e-29 101.1 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|20092446|ref|NP_618521.1| - 5e-17 62.2 0.4 2.7e-16 59.8 0.0 2.2 3 0 0 3 3 3 1 Transposase 5_3_exonuc PF01367.20 gi|20092446|ref|NP_618521.1| - 0.014 16.0 2.8 1.8 9.2 0.0 3.3 2 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold 23S_rRNA_IVP PF05635.11 gi|20092446|ref|NP_618521.1| - 0.14 12.5 3.7 0.38 11.1 0.2 2.7 2 1 0 2 2 2 0 23S rRNA-intervening sequence protein Metallophos PF00149.28 gi|20092447|ref|NP_618522.1| - 0.025 15.1 0.2 0.034 14.6 0.2 1.3 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase DUF3566 PF12089.8 gi|20092449|ref|NP_618524.1| - 0.0016 18.8 7.5 0.0027 18.1 2.6 2.3 1 1 2 3 3 3 2 Transmembrane domain of unknown function (DUF3566) Amidinotransf PF02274.17 gi|20092452|ref|NP_618527.1| - 1e-14 54.4 0.0 1.3e-13 50.8 0.0 2.3 1 1 0 1 1 1 1 Amidinotransferase SpoU_sub_bind PF08032.12 gi|20092452|ref|NP_618527.1| - 0.15 12.4 0.1 4.9 7.5 0.0 3.0 3 1 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Acetyltransf_10 PF13673.7 gi|20092454|ref|NP_618529.1| - 2.3e-35 121.3 0.0 2.9e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20092454|ref|NP_618529.1| - 3e-14 53.2 0.0 2.7e-13 50.2 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20092454|ref|NP_618529.1| - 9.7e-12 45.2 0.0 1.3e-11 44.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|20092454|ref|NP_618529.1| - 1.5e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|20092454|ref|NP_618529.1| - 1.7e-05 24.9 0.0 0.011 15.8 0.0 2.3 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|20092454|ref|NP_618529.1| - 0.00013 21.5 0.1 0.0022 17.5 0.0 2.3 1 1 1 2 2 2 1 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|20092454|ref|NP_618529.1| - 0.00033 21.3 0.0 0.00039 21.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20092454|ref|NP_618529.1| - 0.0029 17.7 0.0 0.0041 17.3 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20092454|ref|NP_618529.1| - 0.0054 16.8 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Methyltransf_25 PF13649.6 gi|20092455|ref|NP_618530.1| - 3.8e-19 69.2 0.0 6.7e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092455|ref|NP_618530.1| - 1e-18 67.5 0.1 1.3e-18 67.2 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|20092455|ref|NP_618530.1| - 3.1e-18 66.2 0.0 4.7e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092455|ref|NP_618530.1| - 5.7e-18 65.2 0.0 7.5e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092455|ref|NP_618530.1| - 8e-17 61.8 0.0 1.4e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092455|ref|NP_618530.1| - 2.6e-13 50.2 0.0 3.3e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20092455|ref|NP_618530.1| - 3.8e-07 29.7 0.0 4.6e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|20092455|ref|NP_618530.1| - 3.8e-05 23.6 0.0 8.3e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|20092455|ref|NP_618530.1| - 5.1e-05 22.7 0.0 6.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_5 PF01795.19 gi|20092455|ref|NP_618530.1| - 0.00012 21.7 0.0 0.005 16.4 0.1 2.1 2 0 0 2 2 2 1 MraW methylase family MTS PF05175.14 gi|20092455|ref|NP_618530.1| - 0.00013 21.5 0.1 0.00026 20.6 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|20092455|ref|NP_618530.1| - 0.00093 18.7 0.1 0.019 14.4 0.1 2.2 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.13 gi|20092455|ref|NP_618530.1| - 0.002 17.6 0.0 0.0028 17.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|20092455|ref|NP_618530.1| - 0.0051 15.9 0.1 0.007 15.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|20092455|ref|NP_618530.1| - 0.013 15.3 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 Hypothetical methyltransferase CheR PF01739.18 gi|20092455|ref|NP_618530.1| - 0.014 14.9 0.3 0.057 12.9 0.3 1.9 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF938 PF06080.12 gi|20092455|ref|NP_618530.1| - 0.027 14.3 0.0 0.12 12.1 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Spermine_synth PF01564.17 gi|20092455|ref|NP_618530.1| - 0.046 13.1 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Glucos_trans_II PF14264.6 gi|20092456|ref|NP_618531.1| - 0.013 14.9 5.3 0.016 14.6 5.3 1.1 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF2530 PF10745.9 gi|20092456|ref|NP_618531.1| - 0.042 14.1 0.4 0.071 13.4 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) DUF5385 PF17359.2 gi|20092456|ref|NP_618531.1| - 0.1 12.2 1.2 0.15 11.6 1.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5385) Peptidase_A8 PF01252.18 gi|20092456|ref|NP_618531.1| - 0.1 12.8 2.8 0.13 12.5 2.8 1.2 1 1 0 1 1 1 0 Signal peptidase (SPase) II FeoB_associated PF12669.7 gi|20092456|ref|NP_618531.1| - 0.11 12.9 2.2 0.11 12.9 2.2 2.4 3 0 0 3 3 2 0 FeoB-associated Cys-rich membrane protein DUF2070 PF09843.9 gi|20092456|ref|NP_618531.1| - 0.12 10.6 1.9 0.12 10.6 1.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CPP1-like PF11833.8 gi|20092456|ref|NP_618531.1| - 0.14 11.8 1.0 0.14 11.8 1.0 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Gram_pos_anchor PF00746.21 gi|20092456|ref|NP_618531.1| - 0.18 11.8 0.4 0.18 11.8 0.4 2.7 2 1 1 3 3 3 0 LPXTG cell wall anchor motif DUF4131 PF13567.6 gi|20092456|ref|NP_618531.1| - 0.24 11.1 1.5 0.26 10.9 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Na_Pi_cotrans PF02690.15 gi|20092456|ref|NP_618531.1| - 0.55 10.3 6.6 1.6 8.9 1.6 2.0 1 1 1 2 2 2 0 Na+/Pi-cotransporter RseC_MucC PF04246.12 gi|20092456|ref|NP_618531.1| - 1.5 8.7 4.6 2.4 8.1 0.6 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF131 PF01998.17 gi|20092456|ref|NP_618531.1| - 1.7 8.4 11.3 0.14 11.8 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF131 DUF4064 PF13273.6 gi|20092456|ref|NP_618531.1| - 2.8 8.3 13.7 15 5.9 9.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) PGA_cap PF09587.10 gi|20092457|ref|NP_618532.1| - 8.6e-75 251.5 0.0 1e-74 251.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap FMN_red PF03358.15 gi|20092458|ref|NP_618533.1| - 1.1e-25 90.2 0.0 1.4e-25 89.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20092458|ref|NP_618533.1| - 3.5e-12 46.4 0.0 3.9e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_16 PF13484.6 gi|20092460|ref|NP_618535.1| - 1.8e-07 32.0 7.5 4e-07 30.9 7.5 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|20092460|ref|NP_618535.1| - 6.5e-07 29.4 6.5 1.4e-06 28.3 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20092460|ref|NP_618535.1| - 5.5e-06 26.5 3.4 0.001 19.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092460|ref|NP_618535.1| - 1.4e-05 25.5 7.3 3.9e-05 24.1 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20092460|ref|NP_618535.1| - 0.0013 18.5 15.6 0.0085 15.9 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092460|ref|NP_618535.1| - 0.0073 16.3 12.9 0.11 12.7 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092460|ref|NP_618535.1| - 0.011 16.2 8.1 0.13 12.8 8.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092460|ref|NP_618535.1| - 0.011 16.3 7.3 0.099 13.2 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092460|ref|NP_618535.1| - 0.018 15.1 13.6 0.11 12.6 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Dehalogenase PF13486.6 gi|20092460|ref|NP_618535.1| - 0.049 13.0 0.0 0.44 9.9 0.0 2.0 2 0 0 2 2 2 0 Reductive dehalogenase subunit Fer4_21 PF14697.6 gi|20092460|ref|NP_618535.1| - 0.23 11.6 8.2 0.65 10.2 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20092460|ref|NP_618535.1| - 0.25 12.0 12.1 0.58 10.8 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20092460|ref|NP_618535.1| - 3.4 8.8 13.3 19 6.5 5.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Cse1 PF08506.10 gi|20092461|ref|NP_618536.1| - 0.16 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Cse1 Methyltransf_25 PF13649.6 gi|20092462|ref|NP_618537.1| - 1.3e-17 64.3 0.0 1.9e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092462|ref|NP_618537.1| - 1.9e-14 54.0 0.0 3e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092462|ref|NP_618537.1| - 1.6e-12 47.5 0.0 2.1e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092462|ref|NP_618537.1| - 1.5e-11 44.4 0.0 2.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092462|ref|NP_618537.1| - 1.7e-10 41.5 0.0 2.7e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092462|ref|NP_618537.1| - 1.3e-09 37.8 0.0 1.9e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20092462|ref|NP_618537.1| - 6.7e-08 32.3 0.0 9.8e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20092462|ref|NP_618537.1| - 1.3e-05 24.7 0.0 2e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|20092462|ref|NP_618537.1| - 0.00052 19.7 0.0 0.00076 19.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|20092462|ref|NP_618537.1| - 0.0034 16.7 0.0 0.0045 16.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase CheR PF01739.18 gi|20092462|ref|NP_618537.1| - 0.16 11.4 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain MetW PF07021.12 gi|20092462|ref|NP_618537.1| - 0.19 11.3 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW NosD PF05048.13 gi|20092464|ref|NP_618539.1| - 3.8e-41 141.0 15.1 3.8e-41 141.0 15.1 1.9 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Pectinesterase PF01095.19 gi|20092464|ref|NP_618539.1| - 0.00028 19.7 0.1 0.00047 19.0 0.1 1.3 1 0 0 1 1 1 1 Pectinesterase Cupredoxin_1 PF13473.6 gi|20092464|ref|NP_618539.1| - 0.044 13.9 0.2 0.48 10.6 0.2 2.2 2 0 0 2 2 2 0 Cupredoxin-like domain Excalibur PF05901.11 gi|20092464|ref|NP_618539.1| - 0.13 12.9 0.1 0.36 11.5 0.1 1.8 1 0 0 1 1 1 0 Excalibur calcium-binding domain Pectate_lyase_3 PF12708.7 gi|20092464|ref|NP_618539.1| - 0.45 10.3 11.6 0.029 14.2 3.9 2.6 2 1 1 3 3 3 0 Pectate lyase superfamily protein DEAD PF00270.29 gi|20092465|ref|NP_618540.1| - 7.3e-13 48.7 0.0 3.2e-11 43.3 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|20092465|ref|NP_618540.1| - 3.9e-09 36.8 0.0 3.4e-08 33.8 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|20092465|ref|NP_618540.1| - 6.4e-08 32.8 2.1 2.1e-07 31.1 0.4 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HD_6 PF18019.1 gi|20092465|ref|NP_618540.1| - 7.6e-05 22.9 0.0 0.00022 21.4 0.0 1.7 1 0 0 1 1 1 1 HD domain AAA_22 PF13401.6 gi|20092465|ref|NP_618540.1| - 0.0011 19.2 0.1 0.0055 17.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF919 PF06034.11 gi|20092465|ref|NP_618540.1| - 0.01 15.6 0.8 0.028 14.3 0.8 1.8 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HD PF01966.22 gi|20092465|ref|NP_618540.1| - 0.044 14.0 0.0 0.17 12.1 0.0 2.0 1 0 0 1 1 1 0 HD domain DUF4423 PF14394.6 gi|20092465|ref|NP_618540.1| - 0.064 13.0 0.6 14 5.4 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Flavi_DEAD PF07652.14 gi|20092465|ref|NP_618540.1| - 0.15 12.1 0.0 0.8 9.7 0.0 2.0 2 0 0 2 2 2 0 Flavivirus DEAD domain Cas_Cas5d PF09704.10 gi|20092466|ref|NP_618541.1| - 0.00017 21.6 0.4 0.00095 19.1 0.4 1.9 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|20092467|ref|NP_618542.1| - 2.4e-16 59.6 0.0 3e-15 56.0 0.0 2.1 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_CXXC_CXXC PF09706.10 gi|20092468|ref|NP_618543.1| - 9.1e-23 80.3 0.1 3.2e-22 78.5 0.0 2.0 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_CXXC_CXXC) CRISPR_Cas2 PF09827.9 gi|20092469|ref|NP_618544.1| - 9.9e-22 76.9 1.1 1.1e-21 76.8 1.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas2CT1978 PF09707.10 gi|20092469|ref|NP_618544.1| - 0.032 14.3 0.0 0.035 14.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas2CT1978) SHOCT PF09851.9 gi|20092469|ref|NP_618544.1| - 0.067 13.0 0.5 0.1 12.4 0.5 1.3 1 0 0 1 1 1 0 Short C-terminal domain ApoO PF09769.9 gi|20092469|ref|NP_618544.1| - 0.1 12.5 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Apolipoprotein O Cas_Cas1 PF01867.16 gi|20092470|ref|NP_618545.1| - 2.8e-83 279.3 0.1 3.2e-83 279.1 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.17 gi|20092471|ref|NP_618546.1| - 4.3e-53 179.7 1.6 5e-53 179.5 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|20092471|ref|NP_618546.1| - 6.5e-09 36.1 0.1 7.2e-09 35.9 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily FAM193_C PF15914.5 gi|20092471|ref|NP_618546.1| - 0.002 17.8 0.2 0.0081 15.9 0.2 2.1 1 0 0 1 1 1 1 FAM193 family C-terminal Cas_Cas6 PF01881.16 gi|20092472|ref|NP_618547.1| - 1.3e-38 132.8 1.5 3.8e-37 128.1 0.3 2.1 1 1 1 2 2 2 2 CRISPR associated protein Cas6 CRISPR_Cas6 PF10040.9 gi|20092472|ref|NP_618547.1| - 0.05 14.2 0.1 0.2 12.3 0.1 2.1 1 1 0 1 1 1 0 CRISPR-associated endoribonuclease Cas6 FAM92 PF06730.11 gi|20092472|ref|NP_618547.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 FAM92 protein DNA_alkylation PF08713.11 gi|20092473|ref|NP_618548.1| - 2.7e-63 213.5 0.9 3.1e-63 213.3 0.9 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Acetyltransf_3 PF13302.7 gi|20092474|ref|NP_618549.1| - 1.1e-20 74.7 0.0 1.3e-20 74.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|20092474|ref|NP_618549.1| - 4.7e-12 46.2 0.1 5.9e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|20092474|ref|NP_618549.1| - 9.4e-07 29.1 0.1 1.1e-06 28.9 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20092474|ref|NP_618549.1| - 0.0026 18.2 0.3 0.0054 17.1 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20092474|ref|NP_618549.1| - 0.0038 17.2 0.0 0.0053 16.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|20092474|ref|NP_618549.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ABC_tran PF00005.27 gi|20092476|ref|NP_618551.1| - 6.7e-24 85.0 0.0 1.2e-23 84.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092476|ref|NP_618551.1| - 3.1e-11 43.6 0.6 0.00013 21.9 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20092476|ref|NP_618551.1| - 0.00013 21.9 0.1 0.012 15.3 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|20092476|ref|NP_618551.1| - 0.00029 21.1 0.0 0.00063 20.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20092476|ref|NP_618551.1| - 0.00041 20.0 1.4 0.00065 19.4 0.2 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|20092476|ref|NP_618551.1| - 0.00043 19.8 0.5 0.0015 18.0 0.3 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF815 PF05673.13 gi|20092476|ref|NP_618551.1| - 0.00075 18.7 0.1 0.0012 18.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|20092476|ref|NP_618551.1| - 0.0021 18.5 0.0 0.0025 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|20092476|ref|NP_618551.1| - 0.0033 17.5 0.0 0.007 16.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|20092476|ref|NP_618551.1| - 0.0071 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|20092476|ref|NP_618551.1| - 0.0072 16.9 0.2 0.015 15.8 0.2 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|20092476|ref|NP_618551.1| - 0.0086 16.0 0.0 0.1 12.5 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain FtsK_SpoIIIE PF01580.18 gi|20092476|ref|NP_618551.1| - 0.0092 15.4 0.1 0.019 14.3 0.1 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF87 PF01935.17 gi|20092476|ref|NP_618551.1| - 0.011 15.9 0.1 0.022 14.9 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_7 PF12775.7 gi|20092476|ref|NP_618551.1| - 0.024 14.1 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|20092476|ref|NP_618551.1| - 0.042 13.6 0.1 0.087 12.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain Mg_chelatase PF01078.21 gi|20092476|ref|NP_618551.1| - 0.052 12.9 0.1 0.13 11.6 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|20092476|ref|NP_618551.1| - 0.055 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|20092476|ref|NP_618551.1| - 0.057 12.3 0.1 0.32 9.9 0.0 2.1 3 0 0 3 3 3 0 AAA-like domain NTPase_1 PF03266.15 gi|20092476|ref|NP_618551.1| - 0.082 12.8 0.2 8.9 6.2 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|20092476|ref|NP_618551.1| - 0.11 12.9 0.1 0.38 11.2 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|20092476|ref|NP_618551.1| - 0.12 11.6 0.0 0.28 10.4 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain Cytidylate_kin PF02224.18 gi|20092476|ref|NP_618551.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_33 PF13671.6 gi|20092476|ref|NP_618551.1| - 0.12 12.5 0.0 0.57 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|20092476|ref|NP_618551.1| - 0.14 12.7 0.1 0.32 11.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF1638 PF07796.11 gi|20092477|ref|NP_618552.1| - 1.6e-36 125.8 0.0 2e-36 125.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1638 PF07796.11 gi|20092478|ref|NP_618553.1| - 3e-39 134.7 0.0 3.5e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Glycogen_syn PF05693.13 gi|20092479|ref|NP_618554.1| - 6.4e-15 54.7 0.0 7.7e-07 28.1 0.0 3.1 3 0 0 3 3 3 3 Glycogen synthase Glyco_transf_4 PF13439.6 gi|20092479|ref|NP_618554.1| - 4.5e-06 26.8 0.0 9.3e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|20092479|ref|NP_618554.1| - 0.018 14.6 0.0 0.048 13.2 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20092479|ref|NP_618554.1| - 0.019 15.4 0.1 0.07 13.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|20092479|ref|NP_618554.1| - 0.042 13.5 0.0 0.22 11.2 0.0 2.0 2 0 0 2 2 2 0 Starch synthase catalytic domain DUF4921 PF16268.5 gi|20092480|ref|NP_618555.1| - 1.1e-19 70.6 0.0 1.5e-14 53.7 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|20092480|ref|NP_618555.1| - 2e-11 44.7 0.0 1.1e-09 39.0 0.0 2.2 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain HIT PF01230.23 gi|20092480|ref|NP_618555.1| - 0.00027 21.6 0.0 1.2 9.9 0.0 2.2 2 0 0 2 2 2 2 HIT domain DUF4931 PF16285.5 gi|20092480|ref|NP_618555.1| - 0.0015 17.9 0.4 0.0083 15.5 0.0 2.2 2 1 1 3 3 3 1 Domain of unknown function (DUF4931) GalP_UDP_tr_C PF02744.17 gi|20092480|ref|NP_618555.1| - 0.0015 18.3 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.8 gi|20092480|ref|NP_618555.1| - 0.015 15.7 0.0 0.04 14.4 0.0 1.7 2 0 0 2 2 2 0 Scavenger mRNA decapping enzyme C-term binding DUF2946 PF11162.8 gi|20092480|ref|NP_618555.1| - 0.31 11.7 2.5 56 4.4 0.0 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF2946) Glycos_transf_1 PF00534.20 gi|20092482|ref|NP_618557.1| - 1e-30 106.5 0.0 1.9e-30 105.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20092482|ref|NP_618557.1| - 1.3e-24 87.1 0.0 2.5e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20092482|ref|NP_618557.1| - 2.6e-24 86.1 0.3 5.4e-24 85.1 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|20092482|ref|NP_618557.1| - 2.2e-18 67.2 0.0 3.6e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|20092482|ref|NP_618557.1| - 2.5e-14 53.6 0.1 1.5e-12 47.7 0.1 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|20092482|ref|NP_618557.1| - 3.5e-11 43.3 0.0 5.9e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|20092482|ref|NP_618557.1| - 0.0022 18.4 0.0 0.0052 17.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Aldo_ket_red PF00248.21 gi|20092483|ref|NP_618558.1| - 5.5e-40 137.4 0.0 1.2e-38 133.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_9 PF13187.6 gi|20092483|ref|NP_618558.1| - 3.9e-07 30.1 9.3 3.9e-07 30.1 9.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092483|ref|NP_618558.1| - 5.9e-07 29.9 21.7 5.6e-06 26.8 13.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20092483|ref|NP_618558.1| - 1.3e-05 25.5 4.2 0.082 13.4 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092483|ref|NP_618558.1| - 0.00014 21.9 15.0 0.01 15.9 16.4 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20092483|ref|NP_618558.1| - 0.00052 20.2 11.4 0.017 15.3 1.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092483|ref|NP_618558.1| - 0.00054 20.5 11.5 0.0025 18.4 11.5 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|20092483|ref|NP_618558.1| - 0.0062 16.3 13.5 0.33 10.8 4.6 2.7 1 1 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|20092483|ref|NP_618558.1| - 0.0076 16.0 18.4 0.35 10.8 4.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20092483|ref|NP_618558.1| - 0.028 14.6 12.8 0.82 9.9 1.3 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain preATP-grasp_3 PF18301.1 gi|20092483|ref|NP_618558.1| - 0.13 12.5 0.0 0.58 10.5 0.0 1.9 2 0 0 2 2 2 0 pre ATP-grasp 3 domain Fer4_4 PF12800.7 gi|20092483|ref|NP_618558.1| - 0.62 10.7 18.4 2.8 8.7 3.9 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2150 PF09920.9 gi|20092484|ref|NP_618559.1| - 1.5e-71 240.3 3.9 1.8e-71 240.0 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) UPF0179 PF03684.13 gi|20092485|ref|NP_618560.1| - 1.4e-53 180.5 3.0 1.6e-53 180.3 3.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) GCSF PF16647.5 gi|20092485|ref|NP_618560.1| - 0.2 11.5 0.2 0.27 11.1 0.2 1.2 1 0 0 1 1 1 0 Granulocyte colony-stimulating factor Fe-ADH_2 PF13685.6 gi|20092486|ref|NP_618561.1| - 7.8e-78 261.6 1.9 9.5e-78 261.3 1.9 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|20092486|ref|NP_618561.1| - 3.7e-26 91.8 4.6 1.1e-24 86.9 4.6 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|20092486|ref|NP_618561.1| - 8.2e-08 31.7 0.2 3.3e-07 29.8 0.2 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase AIRC PF00731.20 gi|20092486|ref|NP_618561.1| - 0.0016 18.0 1.2 0.0034 17.0 1.2 1.6 1 0 0 1 1 1 1 AIR carboxylase DUF63 PF01889.17 gi|20092487|ref|NP_618562.1| - 1.8e-104 349.7 14.0 2e-104 349.6 14.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF999 PF06198.11 gi|20092487|ref|NP_618562.1| - 0.0064 16.5 1.6 0.034 14.2 0.6 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF999) SpoIIM PF01944.17 gi|20092488|ref|NP_618563.1| - 3.1e-35 121.5 16.7 4.6e-35 121.0 16.6 1.3 1 1 0 1 1 1 1 Stage II sporulation protein M SUR7 PF06687.12 gi|20092488|ref|NP_618563.1| - 0.0016 18.1 0.7 0.0028 17.3 0.7 1.3 1 0 0 1 1 1 1 SUR7/PalI family DUF1297 PF06973.12 gi|20092489|ref|NP_618564.1| - 2.8e-78 261.8 0.0 3.7e-78 261.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|20092489|ref|NP_618564.1| - 7.8e-45 151.8 0.0 1.2e-44 151.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GTP_EFTU PF00009.27 gi|20092490|ref|NP_618565.1| - 3.5e-32 111.5 1.5 1.8e-31 109.2 1.5 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|20092490|ref|NP_618565.1| - 6.5e-31 106.4 0.8 1.5e-30 105.3 0.8 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|20092490|ref|NP_618565.1| - 1.3e-07 31.9 0.5 3.6e-07 30.5 0.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|20092490|ref|NP_618565.1| - 1.5e-05 25.0 1.2 0.00024 21.1 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|20092490|ref|NP_618565.1| - 0.00085 19.4 0.0 0.0053 16.8 0.0 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|20092490|ref|NP_618565.1| - 0.0016 18.4 0.2 0.0042 17.1 0.2 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|20092490|ref|NP_618565.1| - 0.0023 17.7 3.3 1.3 8.7 0.5 2.9 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation Nop10p PF04135.12 gi|20092490|ref|NP_618565.1| - 0.0025 17.8 2.6 0.005 16.9 2.6 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.18 gi|20092490|ref|NP_618565.1| - 0.049 13.2 2.0 7.5 6.1 0.6 2.9 2 1 0 2 2 2 0 Ferrous iron transport protein B PolC_DP2 PF03833.13 gi|20092490|ref|NP_618565.1| - 0.1 10.4 0.1 0.14 10.0 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 TF_Zn_Ribbon PF08271.12 gi|20092490|ref|NP_618565.1| - 0.11 12.0 6.3 0.29 10.7 6.3 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|20092490|ref|NP_618565.1| - 0.98 9.4 3.3 1.7 8.6 3.3 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PIN_9 PF18477.1 gi|20092491|ref|NP_618566.1| - 9.8e-43 145.2 0.0 1.1e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 PIN like domain PIN_5 PF08745.11 gi|20092491|ref|NP_618566.1| - 1.7e-05 24.4 0.3 0.012 15.1 0.1 2.1 1 1 1 2 2 2 2 PINc domain ribonuclease PIN_4 PF13638.6 gi|20092491|ref|NP_618566.1| - 0.0073 16.6 0.1 0.25 11.6 0.0 2.0 1 1 1 2 2 2 1 PIN domain PIN PF01850.21 gi|20092491|ref|NP_618566.1| - 0.13 12.8 0.1 0.39 11.2 0.1 1.8 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|20092492|ref|NP_618567.1| - 2.2e-19 69.6 0.2 5.7e-19 68.3 0.0 1.7 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|20092492|ref|NP_618567.1| - 2e-11 44.1 0.5 3.3e-11 43.4 0.5 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|20092492|ref|NP_618567.1| - 0.017 15.4 0.0 0.035 14.3 0.0 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|20092493|ref|NP_618568.1| - 3.4e-13 49.5 0.0 4.2e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Prok-RING_4 PF14447.6 gi|20092493|ref|NP_618568.1| - 0.002 18.0 0.9 0.0028 17.5 0.9 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 TF_Zn_Ribbon PF08271.12 gi|20092493|ref|NP_618568.1| - 0.027 14.0 0.4 0.091 12.3 0.0 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.7 gi|20092493|ref|NP_618568.1| - 0.04 13.9 0.6 0.052 13.6 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|20092493|ref|NP_618568.1| - 0.048 13.5 2.0 0.073 13.0 2.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.6 gi|20092493|ref|NP_618568.1| - 0.062 12.7 1.9 0.64 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|20092493|ref|NP_618568.1| - 0.09 12.8 2.1 0.12 12.4 2.1 1.2 1 0 0 1 1 1 0 zinc-RING finger domain DUF35_N PF12172.8 gi|20092493|ref|NP_618568.1| - 0.57 10.1 0.4 0.57 10.1 0.4 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prim_Zn_Ribbon PF08273.12 gi|20092493|ref|NP_618568.1| - 0.9 9.9 6.2 1 9.7 0.7 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF359 PF04019.12 gi|20092494|ref|NP_618569.1| - 2.6e-44 149.9 0.1 3.2e-44 149.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) eRF1_3 PF03465.15 gi|20092494|ref|NP_618569.1| - 0.042 14.3 0.0 0.062 13.8 0.0 1.5 1 1 0 1 1 1 0 eRF1 domain 3 Ribosomal_S24e PF01282.19 gi|20092495|ref|NP_618570.1| - 2.8e-25 88.1 0.0 3.4e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|20092496|ref|NP_618571.1| - 2.1e-21 75.8 2.7 2.5e-21 75.5 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|20092496|ref|NP_618571.1| - 0.00023 21.0 4.5 0.0026 17.6 4.6 2.3 2 1 0 2 2 2 1 Nudix N-terminal Ribosomal_L37e PF01907.19 gi|20092496|ref|NP_618571.1| - 0.0019 18.3 1.0 0.0025 17.9 1.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e GFA PF04828.14 gi|20092496|ref|NP_618571.1| - 0.013 15.8 1.2 0.059 13.7 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.16 gi|20092496|ref|NP_618571.1| - 0.024 14.5 6.0 0.34 10.8 6.0 2.2 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|20092496|ref|NP_618571.1| - 0.031 13.7 2.0 0.9 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 gi|20092496|ref|NP_618571.1| - 0.039 14.0 0.3 0.041 13.9 0.3 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain DZR PF12773.7 gi|20092496|ref|NP_618571.1| - 0.065 13.3 2.2 0.16 12.0 2.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|20092496|ref|NP_618571.1| - 0.07 12.7 1.3 0.13 11.8 1.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding MqsA_antitoxin PF15731.5 gi|20092496|ref|NP_618571.1| - 0.077 13.1 0.1 0.085 13.0 0.1 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA NOB1_Zn_bind PF08772.11 gi|20092496|ref|NP_618571.1| - 0.18 12.0 5.4 0.36 11.0 0.5 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|20092496|ref|NP_618571.1| - 0.32 10.8 7.5 1.6 8.5 1.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|20092496|ref|NP_618571.1| - 0.33 10.6 9.1 4.4 7.1 9.1 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain PQQ_3 PF13570.6 gi|20092498|ref|NP_618573.1| - 1.6e-99 324.3 71.1 2.5e-10 40.5 0.3 17.5 16 0 0 16 16 16 16 PQQ-like domain PKD PF00801.20 gi|20092498|ref|NP_618573.1| - 3.4e-99 324.8 97.2 7.6e-14 51.3 2.6 10.6 10 0 0 10 10 10 9 PKD domain DUF3344 PF11824.8 gi|20092498|ref|NP_618573.1| - 1.4e-43 149.5 15.5 1.4e-43 149.5 15.5 4.5 4 0 0 4 4 4 1 Protein of unknown function (DUF3344) PQQ PF01011.21 gi|20092498|ref|NP_618573.1| - 1.8e-43 144.4 77.3 5.6e-05 22.9 0.8 18.2 18 0 0 18 18 18 13 PQQ enzyme repeat HA1 PF18239.1 gi|20092498|ref|NP_618573.1| - 1.6e-07 31.0 0.7 2.3 8.1 0.0 5.8 5 0 0 5 5 5 2 Hemagglutinin I PKD_3 PF16820.5 gi|20092498|ref|NP_618573.1| - 9.3e-07 28.5 33.3 0.38 10.5 0.4 9.6 9 0 0 9 9 9 4 PKD-like domain MG2 PF01835.19 gi|20092498|ref|NP_618573.1| - 5.3e-05 23.6 23.8 0.3 11.6 0.1 8.7 8 1 1 9 9 9 2 MG2 domain Dockerin_1 PF00404.18 gi|20092498|ref|NP_618573.1| - 0.032 14.4 4.1 1.8 8.8 0.1 3.8 4 0 0 4 4 3 0 Dockerin type I domain DUF2381 PF09544.10 gi|20092498|ref|NP_618573.1| - 0.067 12.7 0.1 16 4.9 0.0 4.4 5 1 0 5 5 5 0 Protein of unknown function (DUF2381) DUF4685 PF15737.5 gi|20092498|ref|NP_618573.1| - 0.1 13.0 0.0 41 4.6 0.0 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4685) EF-hand_1 PF00036.32 gi|20092498|ref|NP_618573.1| - 1 9.1 13.8 0.024 14.2 1.2 4.5 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.6 gi|20092498|ref|NP_618573.1| - 2 8.5 14.7 0.088 12.8 0.3 5.5 6 0 0 6 6 4 0 EF-hand domain DUF5122 PF17164.4 gi|20092498|ref|NP_618573.1| - 8.9 6.7 27.9 9.9 6.6 0.3 10.0 9 0 0 9 9 9 0 Domain of unknown function (DUF5122) beta-propeller DUF3344 PF11824.8 gi|20092499|ref|NP_618574.1| - 3.6e-140 466.4 32.2 5.9e-74 249.2 11.9 4.9 7 0 0 7 7 7 2 Protein of unknown function (DUF3344) PKD PF00801.20 gi|20092499|ref|NP_618574.1| - 3.1e-107 350.5 87.0 2.8e-15 55.9 3.2 9.4 8 0 0 8 8 8 8 PKD domain PQQ_3 PF13570.6 gi|20092499|ref|NP_618574.1| - 1.1e-54 181.6 72.7 2.3e-10 40.6 0.1 12.9 12 1 1 13 13 11 8 PQQ-like domain PQQ PF01011.21 gi|20092499|ref|NP_618574.1| - 7.8e-31 104.5 44.9 3.5e-07 29.8 0.6 10.0 9 0 0 9 9 9 6 PQQ enzyme repeat CARDB PF07705.11 gi|20092499|ref|NP_618574.1| - 4.5e-20 71.8 7.6 4.5e-20 71.8 7.6 6.1 6 0 0 6 6 6 1 CARDB VCBS PF13517.6 gi|20092499|ref|NP_618574.1| - 6.9e-07 29.8 16.8 2.6e-05 24.7 3.0 13.0 8 4 5 13 13 13 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PKD_3 PF16820.5 gi|20092499|ref|NP_618574.1| - 3.2e-06 26.8 26.7 2.5 7.9 0.1 8.0 7 0 0 7 7 7 4 PKD-like domain MG2 PF01835.19 gi|20092499|ref|NP_618574.1| - 6.2e-05 23.4 21.6 9.1 6.8 0.1 8.5 8 0 0 8 8 8 1 MG2 domain DUF4685 PF15737.5 gi|20092499|ref|NP_618574.1| - 0.0084 16.5 0.0 28 5.2 0.0 4.7 5 0 0 5 5 5 0 Domain of unknown function (DUF4685) Dockerin_1 PF00404.18 gi|20092499|ref|NP_618574.1| - 0.096 12.9 0.7 2.3 8.5 0.1 3.3 2 0 0 2 2 2 0 Dockerin type I domain EF-hand_6 PF13405.6 gi|20092499|ref|NP_618574.1| - 0.21 11.6 5.0 0.11 12.5 0.3 3.2 2 0 0 2 2 1 0 EF-hand domain EF-hand_8 PF13833.6 gi|20092499|ref|NP_618574.1| - 0.46 10.4 2.3 2 8.3 2.3 2.2 1 0 0 1 1 1 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|20092499|ref|NP_618574.1| - 5.9 6.7 13.5 0.031 13.8 1.2 3.8 3 0 0 3 3 3 0 EF hand DUF3344 PF11824.8 gi|20092500|ref|NP_618575.1| - 2.1e-101 339.2 32.7 3e-72 243.6 11.3 6.4 6 2 2 8 8 3 2 Protein of unknown function (DUF3344) PKD PF00801.20 gi|20092500|ref|NP_618575.1| - 8.1e-79 259.5 71.7 6.3e-14 51.6 3.7 8.5 7 0 0 7 7 7 6 PKD domain CARDB PF07705.11 gi|20092500|ref|NP_618575.1| - 1.7e-63 211.2 61.1 1.3e-23 83.2 3.8 8.6 8 1 2 10 10 8 3 CARDB VCBS PF13517.6 gi|20092500|ref|NP_618575.1| - 1.6e-22 79.8 46.2 2.5e-10 40.8 4.6 8.1 3 3 4 7 7 7 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|20092500|ref|NP_618575.1| - 5.6e-17 61.5 36.7 0.00043 20.3 2.5 7.1 6 0 0 6 6 6 5 FG-GAP repeat PKD_3 PF16820.5 gi|20092500|ref|NP_618575.1| - 1.8e-08 34.0 27.5 0.5 10.2 0.1 8.3 9 0 0 9 9 8 5 PKD-like domain Lysyl_oxidase PF01186.17 gi|20092500|ref|NP_618575.1| - 7e-05 22.6 0.2 2.1 8.0 0.0 3.4 3 0 0 3 3 3 2 Lysyl oxidase MG2 PF01835.19 gi|20092500|ref|NP_618575.1| - 0.0013 19.1 19.9 3.8 8.0 0.1 7.4 5 2 2 7 7 7 1 MG2 domain Y_Y_Y PF07495.13 gi|20092500|ref|NP_618575.1| - 0.0023 17.9 14.6 0.53 10.3 0.0 5.9 6 0 0 6 6 6 2 Y_Y_Y domain HA1 PF18239.1 gi|20092500|ref|NP_618575.1| - 0.0042 16.9 4.1 28 4.7 0.1 5.4 6 0 0 6 6 6 0 Hemagglutinin I EF-hand_6 PF13405.6 gi|20092500|ref|NP_618575.1| - 0.014 15.3 3.4 0.081 12.9 0.3 3.9 4 0 0 4 4 3 0 EF-hand domain DUF2381 PF09544.10 gi|20092500|ref|NP_618575.1| - 0.18 11.3 0.4 22 4.4 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2381) EF-hand_8 PF13833.6 gi|20092500|ref|NP_618575.1| - 0.59 10.0 5.2 1.5 8.8 2.3 3.1 3 0 0 3 3 3 0 EF-hand domain pair BsuPI PF12690.7 gi|20092500|ref|NP_618575.1| - 3.9 7.6 6.3 1.7e+02 2.3 0.0 5.3 6 1 0 6 6 6 0 Intracellular proteinase inhibitor SoxZ PF08770.11 gi|20092500|ref|NP_618575.1| - 6 6.7 6.7 4.3 7.2 0.2 4.0 4 0 0 4 4 4 0 Sulphur oxidation protein SoxZ Thioredoxin PF00085.20 gi|20092502|ref|NP_618577.1| - 8.6e-12 45.0 0.0 1.3e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|20092502|ref|NP_618577.1| - 8.5e-08 32.0 0.0 1.1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_6 PF13848.6 gi|20092502|ref|NP_618577.1| - 4.5e-06 26.7 0.0 6.5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|20092502|ref|NP_618577.1| - 5.2e-06 26.6 0.0 1.1e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin DIM1 PF02966.16 gi|20092502|ref|NP_618577.1| - 0.0029 17.4 0.0 0.0042 16.9 0.0 1.3 1 0 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_8 PF13905.6 gi|20092502|ref|NP_618577.1| - 0.0064 16.8 0.0 0.023 15.0 0.0 1.9 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|20092502|ref|NP_618577.1| - 0.014 15.8 0.0 0.033 14.6 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like domain DUF953 PF06110.11 gi|20092502|ref|NP_618577.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) OST3_OST6 PF04756.13 gi|20092502|ref|NP_618577.1| - 0.067 12.5 0.1 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family ETRAMP PF09716.10 gi|20092502|ref|NP_618577.1| - 0.072 13.2 0.0 0.079 13.0 0.0 1.3 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF836 PF05768.14 gi|20092502|ref|NP_618577.1| - 0.084 13.3 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|20092502|ref|NP_618577.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_5 PF13743.6 gi|20092502|ref|NP_618577.1| - 0.14 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin DUF4969 PF16339.5 gi|20092502|ref|NP_618577.1| - 0.19 12.1 1.2 0.83 10.0 0.1 2.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4969) DUF3344 PF11824.8 gi|20092503|ref|NP_618578.1| - 1.1e-64 218.7 23.7 1.3e-64 218.5 23.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) TPR_1 PF00515.28 gi|20092504|ref|NP_618579.1| - 1.2e-96 312.9 65.3 1.2e-07 31.2 0.1 21.3 21 0 0 21 21 21 17 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092504|ref|NP_618579.1| - 2.8e-96 308.0 83.5 1.4e-07 31.1 0.2 21.9 22 0 0 22 22 21 20 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092504|ref|NP_618579.1| - 2.8e-64 212.5 44.8 4.2e-08 32.8 0.2 18.3 12 3 6 18 18 18 12 TPR repeat TPR_16 PF13432.6 gi|20092504|ref|NP_618579.1| - 8.7e-64 211.9 57.7 3.9e-09 37.0 0.2 14.5 6 3 13 19 19 19 16 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092504|ref|NP_618579.1| - 1.2e-53 174.8 65.9 0.00036 20.5 0.2 21.0 22 0 0 22 22 20 14 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092504|ref|NP_618579.1| - 5.6e-53 173.1 63.4 2.1e-05 24.9 0.1 21.0 9 5 12 21 21 21 13 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092504|ref|NP_618579.1| - 2e-52 175.6 52.0 1.1e-09 38.6 0.2 12.9 10 3 2 13 13 12 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20092504|ref|NP_618579.1| - 5.7e-51 167.3 28.6 6.7e-05 23.0 0.1 18.7 19 0 0 19 19 18 10 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092504|ref|NP_618579.1| - 1.6e-49 165.9 25.8 1.9e-06 27.9 0.0 13.6 9 3 3 14 14 14 10 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20092504|ref|NP_618579.1| - 8.3e-47 157.4 54.6 5.8e-06 26.5 0.0 15.3 8 4 8 16 16 16 12 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20092504|ref|NP_618579.1| - 3.4e-37 126.5 32.1 3.2e-08 33.7 0.1 10.1 6 5 2 9 9 9 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|20092504|ref|NP_618579.1| - 1.2e-36 122.0 49.8 0.00063 19.6 0.4 20.1 19 2 2 21 21 21 9 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092504|ref|NP_618579.1| - 6.2e-21 73.6 66.9 0.042 14.5 0.1 20.4 22 1 1 23 23 21 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092504|ref|NP_618579.1| - 8.8e-16 57.2 53.7 0.026 14.4 0.1 16.7 19 0 0 19 19 17 6 Tetratricopeptide repeat TPR_4 PF07721.14 gi|20092504|ref|NP_618579.1| - 1e-13 50.4 19.3 1.2 10.0 0.0 13.4 15 0 0 15 15 11 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20092504|ref|NP_618579.1| - 1.4e-13 50.7 42.1 0.21 11.7 0.1 15.6 15 2 4 19 19 18 5 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|20092504|ref|NP_618579.1| - 2.3e-13 49.9 17.0 0.017 14.1 1.5 8.5 4 3 3 9 9 9 5 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|20092504|ref|NP_618579.1| - 1.6e-11 44.0 19.2 0.02 14.1 0.0 8.7 3 2 6 9 9 9 4 Tetratricopeptide repeat BTAD PF03704.17 gi|20092504|ref|NP_618579.1| - 3.4e-11 43.8 33.6 0.00066 20.1 1.0 10.2 4 4 6 10 10 10 3 Bacterial transcriptional activator domain RPN7 PF10602.9 gi|20092504|ref|NP_618579.1| - 1.1e-09 38.3 9.5 0.64 9.7 0.0 10.3 4 3 3 9 9 9 1 26S proteasome subunit RPN7 SRP_TPR_like PF17004.5 gi|20092504|ref|NP_618579.1| - 2.5e-09 37.2 17.2 0.062 13.3 0.0 8.6 1 1 7 9 9 9 3 Putative TPR-like repeat DUF3856 PF12968.7 gi|20092504|ref|NP_618579.1| - 2e-07 31.1 25.3 1.9 8.5 1.2 11.8 6 2 6 12 12 12 1 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|20092504|ref|NP_618579.1| - 1.7e-06 28.2 22.3 0.12 12.7 0.0 9.3 7 2 3 11 11 9 2 Tetratricopeptide repeat TPR_3 PF07720.12 gi|20092504|ref|NP_618579.1| - 2.5e-06 27.4 26.8 1.3 9.1 0.1 10.4 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|20092504|ref|NP_618579.1| - 4.5e-06 26.5 21.7 0.068 12.9 1.0 8.7 4 2 4 9 9 8 2 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|20092504|ref|NP_618579.1| - 0.00017 21.1 4.0 9.4 5.5 0.0 5.9 4 2 2 6 6 6 0 MalT-like TPR region PPTA PF01239.22 gi|20092504|ref|NP_618579.1| - 0.0012 18.5 0.3 0.43 10.4 0.0 4.2 4 0 0 4 4 3 1 Protein prenyltransferase alpha subunit repeat PknG_TPR PF16918.5 gi|20092504|ref|NP_618579.1| - 0.0024 16.7 2.7 1.4 7.6 0.1 4.5 4 1 0 4 4 4 1 Protein kinase G tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|20092504|ref|NP_618579.1| - 0.0041 17.6 10.8 9.1 6.7 0.0 7.3 7 1 1 9 9 9 0 Alkyl sulfatase dimerisation FAT PF02259.23 gi|20092504|ref|NP_618579.1| - 0.011 14.9 3.7 1.6 7.9 0.0 3.9 3 1 1 4 4 4 0 FAT domain ChAPs PF09295.10 gi|20092504|ref|NP_618579.1| - 0.019 14.0 0.0 9.1 5.2 0.0 3.0 3 0 0 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) HrpB1_HrpK PF09613.10 gi|20092504|ref|NP_618579.1| - 0.071 12.8 0.0 3.3 7.4 0.0 3.7 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) CesT PF05932.13 gi|20092504|ref|NP_618579.1| - 0.12 12.5 0.3 1.8 8.7 0.0 2.8 3 0 0 3 3 2 0 Tir chaperone protein (CesT) family MIT PF04212.18 gi|20092504|ref|NP_618579.1| - 5 7.3 41.2 20 5.4 0.1 12.2 13 1 0 13 13 12 0 MIT (microtubule interacting and transport) domain Peptidase_M22 PF00814.25 gi|20092505|ref|NP_618580.1| - 4.1e-88 295.6 0.0 5.3e-88 295.2 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.22 gi|20092505|ref|NP_618580.1| - 9.5e-08 31.9 0.0 1.7e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|20092505|ref|NP_618580.1| - 1.4e-07 31.7 0.1 0.0017 18.3 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|20092505|ref|NP_618580.1| - 6.1e-07 29.0 0.1 0.00012 21.5 0.0 2.3 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|20092505|ref|NP_618580.1| - 4.2e-05 23.1 0.0 6.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Carbam_trans_N PF02543.15 gi|20092505|ref|NP_618580.1| - 0.0033 17.2 0.0 0.049 13.3 0.0 2.1 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus B12-binding PF02310.19 gi|20092505|ref|NP_618580.1| - 0.029 14.4 0.0 4.4 7.4 0.0 3.5 3 1 0 3 3 3 0 B12 binding domain Pkinase_Tyr PF07714.17 gi|20092505|ref|NP_618580.1| - 0.035 13.4 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase Choline_kinase PF01633.20 gi|20092505|ref|NP_618580.1| - 0.19 11.3 0.0 4 7.0 0.0 2.3 1 1 1 2 2 2 0 Choline/ethanolamine kinase Ham1p_like PF01725.16 gi|20092506|ref|NP_618581.1| - 4.1e-54 183.3 0.0 4.6e-54 183.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family MutL PF13941.6 gi|20092506|ref|NP_618581.1| - 0.063 11.9 0.0 0.077 11.6 0.0 1.1 1 0 0 1 1 1 0 MutL protein PUB_1 PF18486.1 gi|20092507|ref|NP_618582.1| - 0.05 13.5 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 PNGase/UBA- or UBX-containing domain Cyclase PF04199.13 gi|20092508|ref|NP_618583.1| - 3.1e-18 66.3 0.0 4.2e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase Fer4 PF00037.27 gi|20092509|ref|NP_618584.1| - 1.1e-09 37.7 15.2 2.6e-05 23.9 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092509|ref|NP_618584.1| - 3.8e-07 29.9 15.9 0.00075 19.5 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092509|ref|NP_618584.1| - 1.8e-06 27.9 13.9 2.8e-06 27.3 13.9 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20092509|ref|NP_618584.1| - 2.8e-06 27.4 23.0 0.0002 21.4 13.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092509|ref|NP_618584.1| - 4.1e-06 27.6 12.0 4.9e-05 24.2 4.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20092509|ref|NP_618584.1| - 9.6e-06 26.1 11.3 2.4e-05 24.9 11.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20092509|ref|NP_618584.1| - 1e-05 25.6 13.4 0.0013 19.1 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20092509|ref|NP_618584.1| - 1.6e-05 24.7 10.9 0.0069 16.4 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20092509|ref|NP_618584.1| - 0.00014 21.9 9.8 0.03 14.5 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20092509|ref|NP_618584.1| - 0.00042 20.7 12.4 0.0079 16.6 1.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092509|ref|NP_618584.1| - 0.027 15.0 13.7 0.032 14.8 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Thioredoxin PF00085.20 gi|20092509|ref|NP_618584.1| - 0.039 13.9 1.8 0.046 13.7 1.8 1.2 1 0 0 1 1 1 0 Thioredoxin Fer4_3 PF12798.7 gi|20092509|ref|NP_618584.1| - 0.16 13.0 15.0 0.29 12.2 4.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20092509|ref|NP_618584.1| - 0.28 11.4 9.8 0.38 11.0 9.8 1.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Glu_synthase PF01645.17 gi|20092509|ref|NP_618584.1| - 1.5 7.9 3.7 1.6 7.8 3.7 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase Fer4_13 PF13370.6 gi|20092509|ref|NP_618584.1| - 4.3 8.0 12.5 1.8 9.2 1.6 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Radical_SAM PF04055.21 gi|20092510|ref|NP_618585.1| - 2.1e-08 34.7 2.6 1.1e-07 32.4 0.0 2.9 4 0 0 4 4 4 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|20092510|ref|NP_618585.1| - 4.3e-05 23.6 0.0 9.8e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|20092510|ref|NP_618585.1| - 0.0066 16.7 0.0 0.015 15.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain CBP_BcsG PF11658.8 gi|20092510|ref|NP_618585.1| - 0.036 12.5 0.1 0.067 11.6 0.0 1.4 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsG Vps16_C PF04840.12 gi|20092510|ref|NP_618585.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Vps16, C-terminal region Hexapep PF00132.24 gi|20092512|ref|NP_618587.1| - 2.8e-10 39.5 11.8 3.5e-06 26.5 6.2 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|20092512|ref|NP_618587.1| - 1.4e-05 24.7 18.0 0.0018 18.0 7.8 4.0 2 2 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase NAD_synthase PF02540.17 gi|20092513|ref|NP_618588.1| - 2.3e-54 184.1 0.3 1.1e-32 113.0 0.1 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|20092513|ref|NP_618588.1| - 0.0023 16.8 0.0 0.012 14.5 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|20092513|ref|NP_618588.1| - 0.013 15.0 0.0 0.52 9.8 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC BHD_1 PF10403.9 gi|20092513|ref|NP_618588.1| - 0.015 15.1 0.0 0.077 12.9 0.0 2.1 3 0 0 3 3 3 0 Rad4 beta-hairpin domain 1 QueC PF06508.13 gi|20092514|ref|NP_618589.1| - 0.004 16.7 0.0 0.0076 15.8 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|20092514|ref|NP_618589.1| - 0.0093 14.8 0.0 0.023 13.5 0.0 1.6 1 1 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|20092514|ref|NP_618589.1| - 0.022 14.5 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.17 gi|20092514|ref|NP_618589.1| - 0.056 12.5 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 NAD synthase AMP-binding PF00501.28 gi|20092515|ref|NP_618590.1| - 5e-72 242.8 0.0 6.1e-72 242.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|20092515|ref|NP_618590.1| - 4.3e-09 37.2 0.0 8.7e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.25 gi|20092516|ref|NP_618591.1| - 3.5e-05 24.1 0.2 3.9e-05 23.9 0.2 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site ACPS PF01648.20 gi|20092517|ref|NP_618592.1| - 0.027 14.6 0.0 0.29 11.3 0.0 2.3 2 0 0 2 2 2 0 4'-phosphopantetheinyl transferase superfamily OrfB_IS605 PF01385.19 gi|20092518|ref|NP_618593.1| - 5.3e-27 94.4 1.1 1.1e-26 93.4 1.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|20092518|ref|NP_618593.1| - 2.2e-23 82.0 0.2 4.8e-23 80.9 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|20092518|ref|NP_618593.1| - 7.3e-20 70.2 0.3 1.7e-19 69.0 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|20092518|ref|NP_618593.1| - 0.0057 16.8 1.9 0.014 15.6 0.7 2.1 2 0 0 2 2 2 1 Piccolo Zn-finger HypA PF01155.19 gi|20092518|ref|NP_618593.1| - 0.097 12.7 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|20092518|ref|NP_618593.1| - 0.13 12.3 0.5 0.24 11.5 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-RanBP PF00641.18 gi|20092518|ref|NP_618593.1| - 0.74 9.2 6.5 5.4 6.4 0.1 2.6 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others DUF2551 PF10826.8 gi|20092519|ref|NP_618594.1| - 6.6e-31 106.4 0.3 7.3e-31 106.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.19 gi|20092519|ref|NP_618594.1| - 0.089 12.9 0.0 0.11 12.6 0.0 1.0 1 0 0 1 1 1 0 Ferric uptake regulator family Prenyltransf PF01255.19 gi|20092520|ref|NP_618595.1| - 5.6e-72 241.9 0.0 6.9e-72 241.6 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase NIR_SIR PF01077.22 gi|20092520|ref|NP_618595.1| - 0.013 15.0 0.3 5 6.6 0.0 2.7 3 0 0 3 3 3 0 Nitrite and sulphite reductase 4Fe-4S domain PIF1 PF05970.14 gi|20092520|ref|NP_618595.1| - 0.058 12.6 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase Spo12 PF05032.12 gi|20092521|ref|NP_618596.1| - 0.04 13.8 3.7 5.8 6.9 2.4 2.6 2 1 0 2 2 2 0 Spo12 family Thioredox_DsbH PF03190.15 gi|20092523|ref|NP_618598.1| - 1.8e-77 258.9 0.1 2.8e-77 258.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|20092523|ref|NP_618598.1| - 2.2e-11 43.8 0.0 3.7e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like C5-epim_C PF06662.13 gi|20092523|ref|NP_618598.1| - 8.2e-05 22.2 0.4 0.022 14.2 0.0 2.8 3 0 0 3 3 3 2 D-glucuronyl C5-epimerase C-terminus GlcNAc_2-epim PF07221.11 gi|20092523|ref|NP_618598.1| - 0.00087 18.6 0.0 0.2 10.9 0.0 2.9 2 1 0 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|20092523|ref|NP_618598.1| - 0.011 14.9 0.2 0.38 9.8 0.1 2.4 2 1 0 2 2 2 0 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 gi|20092523|ref|NP_618598.1| - 0.012 15.2 0.0 4.2 6.8 0.0 2.9 2 2 0 2 2 2 0 Glycosyl hydrolase family 76 LANC_like PF05147.13 gi|20092523|ref|NP_618598.1| - 0.014 14.0 0.1 0.44 9.1 0.0 2.6 2 0 0 2 2 2 0 Lanthionine synthetase C-like protein Thioredoxin_2 PF13098.6 gi|20092523|ref|NP_618598.1| - 0.086 13.3 0.0 0.26 11.7 0.0 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Pec_lyase PF09492.10 gi|20092523|ref|NP_618598.1| - 0.13 11.5 0.2 1 8.6 0.0 2.3 2 0 0 2 2 2 0 Pectic acid lyase Cyt-b5 PF00173.28 gi|20092524|ref|NP_618599.1| - 2e-11 43.9 0.4 2.4e-11 43.6 0.4 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain Putative_PNPOx PF01243.20 gi|20092525|ref|NP_618600.1| - 2.4e-14 53.3 0.0 6e-14 52.0 0.0 1.6 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.6 gi|20092525|ref|NP_618600.1| - 4.7e-06 26.7 0.1 6e-06 26.3 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|20092525|ref|NP_618600.1| - 4.5e-05 23.5 0.0 5.9e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Suv3_N PF18114.1 gi|20092525|ref|NP_618600.1| - 0.017 15.2 0.1 0.038 14.1 0.1 1.6 1 1 0 1 1 1 0 Suv3 helical N-terminal domain Hpr_kinase_N PF02603.16 gi|20092525|ref|NP_618600.1| - 0.036 14.1 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase N terminus Pyrid_ox_like PF16242.5 gi|20092525|ref|NP_618600.1| - 0.081 12.5 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like Dynactin_p62 PF05502.13 gi|20092525|ref|NP_618600.1| - 0.087 11.6 0.1 0.091 11.5 0.1 1.1 1 0 0 1 1 1 0 Dynactin p62 family DUF5601 PF18151.1 gi|20092525|ref|NP_618600.1| - 0.1 13.0 0.1 0.4 11.0 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5601) FANC_SAP PF18081.1 gi|20092525|ref|NP_618600.1| - 0.14 12.3 0.8 0.43 10.8 0.8 1.8 1 1 0 1 1 1 0 Fanconi anemia-associated nuclease SAP domain PPDK_N PF01326.19 gi|20092526|ref|NP_618601.1| - 1.7e-17 63.7 0.0 2.1e-17 63.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AAA_18 PF13238.6 gi|20092527|ref|NP_618602.1| - 8e-24 84.6 0.9 1.1e-23 84.2 0.5 1.4 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.6 gi|20092527|ref|NP_618602.1| - 1.1e-05 25.9 0.1 0.00011 22.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|20092527|ref|NP_618602.1| - 3e-05 24.3 0.0 5e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|20092527|ref|NP_618602.1| - 3.4e-05 24.0 0.0 0.0018 18.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|20092527|ref|NP_618602.1| - 0.00011 22.1 1.1 0.1 12.4 0.1 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase CoaE PF01121.20 gi|20092527|ref|NP_618602.1| - 0.00021 21.0 0.1 0.065 12.9 0.0 2.3 1 1 0 2 2 2 2 Dephospho-CoA kinase AAA_5 PF07728.14 gi|20092527|ref|NP_618602.1| - 0.0013 18.8 0.1 0.002 18.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20092527|ref|NP_618602.1| - 0.0028 18.1 0.6 0.011 16.1 0.6 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|20092527|ref|NP_618602.1| - 0.0084 15.4 0.1 0.019 14.2 0.1 1.8 1 1 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|20092527|ref|NP_618602.1| - 0.0095 16.2 0.2 0.027 14.8 0.1 1.8 1 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|20092527|ref|NP_618602.1| - 0.0099 15.6 0.5 4 7.1 0.0 2.6 2 1 1 3 3 3 2 Thymidylate kinase KTI12 PF08433.10 gi|20092527|ref|NP_618602.1| - 0.031 13.7 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Cytidylate_kin PF02224.18 gi|20092527|ref|NP_618602.1| - 0.034 13.9 0.4 4.4 7.0 0.0 2.4 1 1 1 2 2 2 0 Cytidylate kinase DUF4085 PF13315.6 gi|20092527|ref|NP_618602.1| - 0.037 13.6 1.6 0.051 13.2 1.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4085) PRK PF00485.18 gi|20092527|ref|NP_618602.1| - 0.041 13.6 0.3 0.32 10.7 0.0 2.3 1 1 1 3 3 3 0 Phosphoribulokinase / Uridine kinase family Hist_deacetyl PF00850.19 gi|20092527|ref|NP_618602.1| - 0.043 13.3 0.1 0.05 13.1 0.1 1.1 1 0 0 1 1 1 0 Histone deacetylase domain UPF0180 PF03698.13 gi|20092527|ref|NP_618602.1| - 0.046 13.9 0.2 1.1 9.5 0.2 2.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) SKI PF01202.22 gi|20092527|ref|NP_618602.1| - 0.058 13.5 0.2 0.22 11.6 0.2 1.9 1 1 0 1 1 1 0 Shikimate kinase ADK PF00406.22 gi|20092527|ref|NP_618602.1| - 0.059 13.5 0.0 0.53 10.4 0.0 2.1 1 1 1 2 2 2 0 Adenylate kinase ABC_tran PF00005.27 gi|20092527|ref|NP_618602.1| - 0.11 13.0 0.1 0.12 12.8 0.1 1.4 1 1 0 1 1 1 0 ABC transporter CTP_transf_like PF01467.26 gi|20092528|ref|NP_618603.1| - 2.7e-15 56.8 0.1 7.8e-15 55.3 0.1 1.7 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|20092528|ref|NP_618603.1| - 0.076 12.5 0.2 6.6 6.1 0.0 2.1 1 1 0 2 2 2 0 ATP-sulfurylase DUF5446 PF17522.2 gi|20092528|ref|NP_618603.1| - 0.19 11.9 0.0 0.37 11.0 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5446) FrhB_FdhB_C PF04432.13 gi|20092529|ref|NP_618604.1| - 1.7e-37 128.6 0.1 2.8e-37 127.9 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|20092529|ref|NP_618604.1| - 4e-17 62.1 0.0 6.4e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|20092529|ref|NP_618604.1| - 5e-07 29.3 20.0 2.8e-05 23.7 7.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20092529|ref|NP_618604.1| - 5.6e-06 26.4 7.2 5.6e-06 26.4 7.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20092529|ref|NP_618604.1| - 1.6e-05 25.3 5.2 4.4e-05 23.8 5.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092529|ref|NP_618604.1| - 1.7e-05 25.3 9.9 1.7e-05 25.3 9.9 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092529|ref|NP_618604.1| - 7.6e-05 22.6 16.1 0.005 16.9 4.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092529|ref|NP_618604.1| - 0.00019 21.5 12.6 0.00019 21.5 12.6 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092529|ref|NP_618604.1| - 0.0006 19.9 17.4 0.016 15.3 0.9 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092529|ref|NP_618604.1| - 0.0035 17.9 6.7 0.0035 17.9 6.7 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092529|ref|NP_618604.1| - 0.0046 17.0 6.1 0.0046 17.0 6.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20092529|ref|NP_618604.1| - 0.013 15.9 1.3 0.013 15.9 1.3 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain CTP_transf_like PF01467.26 gi|20092529|ref|NP_618604.1| - 0.081 13.1 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase-like Fer4_16 PF13484.6 gi|20092529|ref|NP_618604.1| - 0.083 13.8 17.2 0.075 14.0 12.5 2.7 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|20092529|ref|NP_618604.1| - 7.1 7.5 13.1 17 6.3 3.0 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20092529|ref|NP_618604.1| - 9.5 6.8 13.0 11 6.7 5.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Bac_luciferase PF00296.20 gi|20092530|ref|NP_618605.1| - 2.5e-64 217.7 0.0 3e-64 217.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Desulfoferrod_N PF06397.12 gi|20092531|ref|NP_618606.1| - 1.4e-19 69.4 6.1 1.5e-19 69.3 6.1 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-RRN7 PF11781.8 gi|20092531|ref|NP_618606.1| - 0.0096 15.6 0.9 0.016 14.9 0.9 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF3449 PF11931.8 gi|20092531|ref|NP_618606.1| - 0.062 13.1 0.1 0.068 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) DUF2180 PF09947.9 gi|20092532|ref|NP_618607.1| - 6e-35 119.0 7.3 6.9e-35 118.9 7.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.21 gi|20092532|ref|NP_618607.1| - 0.012 15.7 2.3 0.02 15.0 2.3 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-UBP_var PF17807.1 gi|20092532|ref|NP_618607.1| - 0.037 13.8 0.6 0.037 13.8 0.6 1.8 2 0 0 2 2 2 0 Variant UBP zinc finger DZR PF12773.7 gi|20092532|ref|NP_618607.1| - 0.047 13.7 7.4 0.33 11.0 7.4 2.0 1 1 0 1 1 1 0 Double zinc ribbon DUF2180 PF09947.9 gi|20092533|ref|NP_618608.1| - 7.6e-32 109.1 6.0 9.4e-32 108.8 6.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|20092533|ref|NP_618608.1| - 0.00021 22.0 3.1 0.0063 17.3 0.4 2.2 2 0 0 2 2 2 2 DDE_Tnp_1-like zinc-ribbon FYVE PF01363.21 gi|20092533|ref|NP_618608.1| - 0.026 14.6 1.7 0.054 13.6 1.7 1.6 1 1 0 1 1 1 0 FYVE zinc finger zf-UBP_var PF17807.1 gi|20092533|ref|NP_618608.1| - 0.048 13.4 1.4 0.096 12.5 1.4 1.4 1 0 0 1 1 1 0 Variant UBP zinc finger CMD PF02627.20 gi|20092534|ref|NP_618609.1| - 1.2e-16 60.5 0.1 1.7e-16 60.0 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|20092534|ref|NP_618609.1| - 0.035 13.0 0.0 0.039 12.9 0.0 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) SapB_1 PF05184.15 gi|20092534|ref|NP_618609.1| - 0.2 11.7 3.0 0.2 11.7 1.3 1.9 2 1 0 2 2 2 0 Saposin-like type B, region 1 Desulfoferrodox PF01880.18 gi|20092535|ref|NP_618610.1| - 1.7e-33 115.1 0.5 2e-33 114.8 0.5 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Cytochrome_C7 PF14522.6 gi|20092537|ref|NP_618612.1| - 7.9e-05 22.6 6.4 0.034 14.2 6.9 2.8 1 1 0 1 1 1 1 Cytochrome c7 and related cytochrome c Cytochrome_C554 PF13435.6 gi|20092537|ref|NP_618612.1| - 0.0001 23.2 3.8 0.28 12.1 1.2 2.8 2 0 0 2 2 2 2 Cytochrome c554 and c-prime C1_1 PF00130.22 gi|20092537|ref|NP_618612.1| - 0.0001 22.1 0.8 0.17 11.8 0.1 2.6 2 1 0 2 2 2 2 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_c3_2 PF14537.6 gi|20092537|ref|NP_618612.1| - 0.00031 21.2 7.3 0.65 10.5 4.5 3.1 2 2 1 3 3 3 2 Cytochrome c3 Cytochrome_CBB3 PF13442.6 gi|20092537|ref|NP_618612.1| - 0.0024 18.2 10.3 2.5 8.5 0.0 4.4 2 2 2 4 4 4 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 gi|20092537|ref|NP_618612.1| - 0.0034 17.1 6.3 19 5.1 3.1 4.1 3 1 1 4 4 4 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_NNT PF03264.14 gi|20092537|ref|NP_618612.1| - 0.032 13.9 3.0 1.8 8.2 1.1 2.5 2 0 0 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region SoxY PF13501.6 gi|20092537|ref|NP_618612.1| - 0.045 14.0 0.1 0.092 13.0 0.1 1.4 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY DZR PF12773.7 gi|20092537|ref|NP_618612.1| - 0.083 12.9 3.4 2.2 8.4 0.2 2.5 2 0 0 2 2 2 0 Double zinc ribbon Gram_pos_anchor PF00746.21 gi|20092537|ref|NP_618612.1| - 0.089 12.7 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 LPXTG cell wall anchor motif GSu_C4xC__C2xCH PF09698.10 gi|20092537|ref|NP_618612.1| - 4.1 8.3 15.3 4 8.3 0.2 4.1 4 1 0 4 4 3 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) zf-RRPl_C4 PF17026.5 gi|20092537|ref|NP_618612.1| - 4.3 7.5 5.7 0.47 10.6 0.4 2.0 2 1 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type PHD_4 PF16866.5 gi|20092537|ref|NP_618612.1| - 8.9 6.5 6.6 16 5.6 2.7 2.6 2 1 0 2 2 2 0 PHD-finger FMN_red PF03358.15 gi|20092538|ref|NP_618613.1| - 5.1e-31 107.5 0.0 7e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20092538|ref|NP_618613.1| - 1.7e-05 24.6 0.0 3.8e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin-like fold Flavoprotein PF02441.19 gi|20092539|ref|NP_618614.1| - 8.6e-19 67.8 0.0 1.1e-18 67.5 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein Rubrerythrin PF02915.17 gi|20092540|ref|NP_618615.1| - 5.5e-13 49.5 7.2 8.5e-13 48.9 7.2 1.3 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|20092540|ref|NP_618615.1| - 0.00016 22.0 1.8 0.22 11.8 0.1 2.4 3 0 0 3 3 3 2 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|20092540|ref|NP_618615.1| - 0.00023 21.4 0.9 0.46 10.7 0.1 2.2 2 0 0 2 2 2 2 Ferritin-like domain PrmC_N PF17827.1 gi|20092540|ref|NP_618615.1| - 0.02 15.5 0.0 0.056 14.0 0.0 1.7 1 0 0 1 1 1 0 PrmC N-terminal domain V-ATPase_G PF03179.15 gi|20092540|ref|NP_618615.1| - 0.15 12.6 0.0 0.15 12.6 0.0 2.4 2 1 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit Ferritin PF00210.24 gi|20092540|ref|NP_618615.1| - 0.16 11.9 8.1 0.61 10.0 2.2 2.3 1 1 1 2 2 2 0 Ferritin-like domain Flavodoxin_1 PF00258.25 gi|20092541|ref|NP_618616.1| - 1.2e-15 57.9 0.0 2.4e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|20092541|ref|NP_618616.1| - 4.3e-11 43.2 0.1 7.3e-11 42.5 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20092541|ref|NP_618616.1| - 9.2e-05 22.0 0.0 0.00026 20.6 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FMN_red PF03358.15 gi|20092541|ref|NP_618616.1| - 0.00039 20.2 0.2 0.015 15.1 0.2 2.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|20092541|ref|NP_618616.1| - 0.00094 19.4 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin domain AAL_decarboxy PF03306.13 gi|20092542|ref|NP_618617.1| - 1.4e-47 161.8 0.0 1.6e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase DUF4277 PF14104.6 gi|20092543|ref|NP_618618.1| - 3.2e-38 130.4 0.0 7.7e-38 129.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20092543|ref|NP_618618.1| - 1.6e-11 44.3 0.3 6.4e-11 42.3 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20092543|ref|NP_618618.1| - 0.062 13.6 0.2 11 6.4 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute AAL_decarboxy PF03306.13 gi|20092544|ref|NP_618619.1| - 3e-32 111.7 0.0 3.7e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase LPAM_1 PF08139.12 gi|20092544|ref|NP_618619.1| - 0.3 11.6 1.6 0.62 10.7 1.6 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Cyclase PF04199.13 gi|20092545|ref|NP_618620.1| - 3.6e-16 59.6 0.0 4.7e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PAXX PF15384.6 gi|20092545|ref|NP_618620.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 PAXX, PAralog of XRCC4 and XLF, also called C9orf142 Iso_dh PF00180.20 gi|20092546|ref|NP_618621.1| - 1.4e-94 317.1 0.0 1.7e-94 316.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Mntp PF02659.15 gi|20092547|ref|NP_618622.1| - 1.9e-50 170.5 8.4 1.9e-50 170.5 8.4 2.0 2 0 0 2 2 2 1 Putative manganese efflux pump DUF373 PF04123.13 gi|20092547|ref|NP_618622.1| - 0.12 11.9 1.5 0.12 11.8 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Pam17 PF08566.10 gi|20092547|ref|NP_618622.1| - 0.81 9.5 3.3 4.8 7.0 0.2 2.2 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 Aconitase_C PF00694.19 gi|20092549|ref|NP_618624.1| - 2.3e-19 70.0 0.0 3.2e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|20092549|ref|NP_618624.1| - 0.00055 19.6 0.0 0.029 14.0 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus FAD_binding_9 PF08021.11 gi|20092549|ref|NP_618624.1| - 0.17 12.1 0.0 0.38 11.0 0.0 1.5 1 0 0 1 1 1 0 Siderophore-interacting FAD-binding domain AglB_L1 PF18079.1 gi|20092550|ref|NP_618625.1| - 1.7e-29 102.0 5.4 4.4e-29 100.6 5.4 1.8 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|20092550|ref|NP_618625.1| - 2.2e-28 99.5 33.3 4.9e-28 98.3 32.8 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|20092550|ref|NP_618625.1| - 0.0068 16.6 6.8 0.0068 16.6 6.8 4.4 4 2 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase YwiC PF14256.6 gi|20092550|ref|NP_618625.1| - 0.12 12.7 16.6 0.22 11.8 1.5 3.5 3 1 1 4 4 4 0 YwiC-like protein Big_1 PF02369.16 gi|20092550|ref|NP_618625.1| - 0.37 10.8 1.7 0.76 9.8 1.7 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) AglB_L1 PF18079.1 gi|20092551|ref|NP_618626.1| - 5.2e-30 103.6 3.0 5.4e-29 100.3 4.8 1.8 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|20092551|ref|NP_618626.1| - 3e-23 82.5 34.4 4.4e-23 82.0 29.5 3.0 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit TrbC PF04956.13 gi|20092551|ref|NP_618626.1| - 0.12 12.6 0.2 0.12 12.6 0.2 3.6 4 0 0 4 4 4 0 TrbC/VIRB2 family Cytochrom_B_C PF00032.17 gi|20092551|ref|NP_618626.1| - 0.22 11.8 6.9 0.45 10.8 2.0 2.9 2 0 0 2 2 2 0 Cytochrome b(C-terminal)/b6/petD DUF5058 PF16481.5 gi|20092551|ref|NP_618626.1| - 0.79 9.4 7.3 0.044 13.5 0.7 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF5058) AglB_L1 PF18079.1 gi|20092552|ref|NP_618627.1| - 1.8e-28 98.7 4.9 6.1e-28 96.9 5.1 1.8 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|20092552|ref|NP_618627.1| - 1.6e-25 90.0 31.1 3.8e-24 85.5 31.1 2.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit TrbC PF04956.13 gi|20092552|ref|NP_618627.1| - 0.0064 16.7 0.4 0.12 12.7 0.2 2.9 2 0 0 2 2 2 1 TrbC/VIRB2 family MG4 PF17789.1 gi|20092552|ref|NP_618627.1| - 0.12 12.5 0.1 0.25 11.5 0.1 1.4 1 0 0 1 1 1 0 Macroglobulin domain MG4 Glycos_transf_1 PF00534.20 gi|20092553|ref|NP_618628.1| - 2.9e-22 79.0 0.0 4.8e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20092553|ref|NP_618628.1| - 2e-18 67.1 0.0 3.3e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20092553|ref|NP_618628.1| - 4.4e-13 49.6 0.0 8.5e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|20092553|ref|NP_618628.1| - 2.7e-09 37.6 0.0 1.6e-08 35.2 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|20092554|ref|NP_618629.1| - 5.1e-35 121.0 0.6 8.4e-35 120.3 0.6 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|20092554|ref|NP_618629.1| - 8e-32 110.1 0.3 2.2e-31 108.7 0.3 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20092554|ref|NP_618629.1| - 1.9e-23 83.4 0.0 3.3e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20092554|ref|NP_618629.1| - 1.6e-21 77.5 0.0 4.4e-21 76.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|20092554|ref|NP_618629.1| - 2.3e-12 47.1 0.2 4.8e-12 46.1 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|20092554|ref|NP_618629.1| - 2.1e-05 24.3 0.3 0.0078 15.9 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain DUF2325 PF10087.9 gi|20092554|ref|NP_618629.1| - 0.011 15.9 0.0 13 6.0 0.0 3.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) Glyco_trans_1_2 PF13524.6 gi|20092554|ref|NP_618629.1| - 0.011 16.1 0.0 0.064 13.7 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 DUF4031 PF13223.6 gi|20092554|ref|NP_618629.1| - 0.17 12.1 0.5 0.66 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4031) Glycos_transf_1 PF00534.20 gi|20092555|ref|NP_618630.1| - 8.6e-40 136.1 0.2 1.5e-39 135.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20092555|ref|NP_618630.1| - 1.7e-30 106.1 0.0 2.5e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|20092555|ref|NP_618630.1| - 2.6e-09 37.4 0.0 6.5e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20092555|ref|NP_618630.1| - 5.1e-09 36.4 0.0 1.3e-08 35.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.21 gi|20092555|ref|NP_618630.1| - 3.1e-06 26.2 0.0 4.6e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase family 20 Glycogen_syn PF05693.13 gi|20092555|ref|NP_618630.1| - 0.0062 15.1 0.0 0.0063 15.1 0.0 1.3 1 0 0 1 1 1 1 Glycogen synthase Glycos_transf_2 PF00535.26 gi|20092556|ref|NP_618631.1| - 5.3e-23 81.7 0.5 1.9e-10 40.8 0.0 2.7 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20092556|ref|NP_618631.1| - 8.2e-11 42.2 0.0 0.00018 21.4 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|20092556|ref|NP_618631.1| - 0.0014 18.6 0.0 0.0035 17.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 rve PF00665.26 gi|20092557|ref|NP_618632.1| - 4.2e-24 85.0 0.0 7.5e-24 84.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20092557|ref|NP_618632.1| - 1.7e-05 24.8 0.2 3.9e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|20092557|ref|NP_618632.1| - 7.7e-05 22.4 0.6 0.00045 19.9 0.0 2.5 2 1 1 3 3 3 1 Homeodomain-like domain rve_3 PF13683.6 gi|20092557|ref|NP_618632.1| - 8.7e-05 22.2 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.6 gi|20092557|ref|NP_618632.1| - 0.00018 21.2 0.2 0.00039 20.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20092557|ref|NP_618632.1| - 0.00081 19.4 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_Tc3_1 PF11427.8 gi|20092557|ref|NP_618632.1| - 0.013 15.4 0.2 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.12 gi|20092557|ref|NP_618632.1| - 0.021 14.7 0.1 0.067 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20092557|ref|NP_618632.1| - 0.023 14.7 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|20092557|ref|NP_618632.1| - 0.024 14.2 0.1 0.064 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20092557|ref|NP_618632.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20092557|ref|NP_618632.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_28 PF13518.6 gi|20092557|ref|NP_618632.1| - 0.16 12.1 0.0 0.5 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain IstB_IS21 PF01695.17 gi|20092558|ref|NP_618633.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20092558|ref|NP_618633.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20092558|ref|NP_618633.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20092558|ref|NP_618633.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20092558|ref|NP_618633.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20092558|ref|NP_618633.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20092558|ref|NP_618633.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092558|ref|NP_618633.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20092558|ref|NP_618633.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20092558|ref|NP_618633.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20092558|ref|NP_618633.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20092558|ref|NP_618633.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20092558|ref|NP_618633.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20092558|ref|NP_618633.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20092558|ref|NP_618633.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20092558|ref|NP_618633.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20092558|ref|NP_618633.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20092558|ref|NP_618633.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20092558|ref|NP_618633.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family MULE PF10551.9 gi|20092559|ref|NP_618634.1| - 6.2e-07 29.7 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20092559|ref|NP_618634.1| - 0.015 15.3 0.5 4.6 7.3 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20092559|ref|NP_618634.1| - 0.019 15.0 0.1 0.054 13.5 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein DUF659 PF04937.15 gi|20092559|ref|NP_618634.1| - 0.029 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20092559|ref|NP_618634.1| - 0.034 14.0 1.0 0.081 12.8 0.3 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Transposase_mut PF00872.18 gi|20092559|ref|NP_618634.1| - 0.061 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20092559|ref|NP_618634.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20092559|ref|NP_618634.1| - 0.15 12.1 3.3 0.38 10.8 3.3 1.7 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20092559|ref|NP_618634.1| - 0.31 11.6 5.1 0.61 10.6 3.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|20092559|ref|NP_618634.1| - 0.38 10.8 2.6 76 3.4 0.0 3.4 2 1 0 2 2 2 0 Transposase zinc-binding domain PHD PF00628.29 gi|20092559|ref|NP_618634.1| - 5.5 7.0 6.9 1.6 8.7 2.9 2.2 2 1 0 2 2 2 0 PHD-finger DDE_3 PF13358.6 gi|20092560|ref|NP_618635.1| - 4.4e-05 23.3 0.0 5e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease Acid_phosphat_B PF03767.14 gi|20092560|ref|NP_618635.1| - 0.051 13.2 0.1 0.053 13.1 0.1 1.0 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Polysacc_synt_3 PF13440.6 gi|20092562|ref|NP_618637.1| - 1.6e-22 80.1 13.9 1.6e-22 80.1 13.9 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|20092562|ref|NP_618637.1| - 6.3e-22 78.2 36.0 6.7e-18 65.1 23.1 3.5 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|20092562|ref|NP_618637.1| - 6.6e-20 71.6 21.1 6.6e-20 71.6 21.1 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|20092562|ref|NP_618637.1| - 8.5e-13 48.3 4.1 8.5e-13 48.3 4.1 4.8 3 2 1 4 4 4 3 MatE MurJ PF03023.14 gi|20092562|ref|NP_618637.1| - 8.6e-08 31.2 36.6 8.6e-08 31.2 36.6 2.8 1 1 1 2 2 2 1 Lipid II flippase MurJ Vma12 PF11712.8 gi|20092562|ref|NP_618637.1| - 7.4 6.6 11.4 4.1 7.5 1.0 3.1 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase PS_pyruv_trans PF04230.13 gi|20092563|ref|NP_618638.1| - 3.3e-21 76.5 0.3 8.7e-21 75.1 0.3 1.7 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Methyltransf_23 PF13489.6 gi|20092563|ref|NP_618638.1| - 4.9e-15 55.8 0.0 9e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092563|ref|NP_618638.1| - 2.3e-08 34.5 0.0 2.3e-07 31.4 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092563|ref|NP_618638.1| - 7.6e-07 29.8 0.1 6.8e-06 26.7 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092563|ref|NP_618638.1| - 0.00044 20.1 0.2 0.0044 16.8 0.1 2.5 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092563|ref|NP_618638.1| - 0.0013 19.3 0.0 0.022 15.5 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|20092563|ref|NP_618638.1| - 0.015 14.2 0.0 0.029 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) CMAS PF02353.20 gi|20092563|ref|NP_618638.1| - 0.037 13.3 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TFIIS_C PF01096.18 gi|20092563|ref|NP_618638.1| - 0.049 13.5 0.2 0.11 12.4 0.2 1.6 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) NodS PF05401.11 gi|20092563|ref|NP_618638.1| - 0.051 13.2 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Nodulation protein S (NodS) zinc_ribbon_4 PF13717.6 gi|20092563|ref|NP_618638.1| - 0.073 13.0 0.1 0.24 11.3 0.1 1.9 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|20092563|ref|NP_618638.1| - 0.074 12.7 0.2 0.21 11.3 0.2 1.8 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.12 gi|20092563|ref|NP_618638.1| - 0.11 12.0 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding CTP_transf_3 PF02348.19 gi|20092564|ref|NP_618639.1| - 8.7e-29 101.0 0.1 1.3e-28 100.4 0.1 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Hydrolase_3 PF08282.12 gi|20092564|ref|NP_618639.1| - 1.5e-10 41.2 3.4 2.4e-10 40.6 0.1 2.7 2 1 2 4 4 4 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20092564|ref|NP_618639.1| - 1.8e-08 35.0 0.5 1.5e-06 28.7 0.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|20092564|ref|NP_618639.1| - 2.7e-07 30.8 1.0 1.3e-06 28.6 1.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20092564|ref|NP_618639.1| - 0.00075 19.9 0.0 0.0041 17.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase IspD PF01128.19 gi|20092564|ref|NP_618639.1| - 0.0008 19.2 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 gi|20092564|ref|NP_618639.1| - 0.006 16.9 0.0 0.0098 16.3 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain FAD_binding_3 PF01494.19 gi|20092564|ref|NP_618639.1| - 0.062 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Hydrolase_6 PF13344.6 gi|20092564|ref|NP_618639.1| - 0.094 12.8 0.1 0.25 11.5 0.1 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20092564|ref|NP_618639.1| - 0.18 11.9 0.0 0.43 10.7 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like NeuB PF03102.14 gi|20092565|ref|NP_618640.1| - 1.5e-69 234.2 0.0 1.7e-69 233.9 0.0 1.0 1 0 0 1 1 1 1 NeuB family DUF4277 PF14104.6 gi|20092567|ref|NP_618642.1| - 2.4e-42 143.7 0.0 4.3e-42 142.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20092567|ref|NP_618642.1| - 6.5e-06 25.9 0.0 9.8e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Transposase DDE domain DUF1410 PF07198.11 gi|20092567|ref|NP_618642.1| - 0.022 15.3 4.0 0.22 12.0 0.6 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1410) LRR_5 PF13306.6 gi|20092567|ref|NP_618642.1| - 0.11 12.5 1.1 7.5 6.5 0.2 2.4 2 0 0 2 2 2 0 BspA type Leucine rich repeat region (6 copies) Ntox15 PF15604.6 gi|20092567|ref|NP_618642.1| - 5.1 7.2 6.3 0.74 9.9 1.5 1.9 1 1 1 2 2 2 0 Novel toxin 15 DDE_Tnp_1 PF01609.21 gi|20092568|ref|NP_618643.1| - 9.7e-11 41.7 0.0 1.7e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092569|ref|NP_618644.1| - 0.0013 18.5 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain NAD_binding_8 PF13450.6 gi|20092572|ref|NP_618647.1| - 7.2e-13 48.6 0.0 1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|20092572|ref|NP_618647.1| - 5.7e-07 29.2 0.0 6.2e-07 29.0 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|20092572|ref|NP_618647.1| - 9.7e-07 28.7 0.0 9.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|20092572|ref|NP_618647.1| - 7.5e-05 22.0 0.0 9.5e-05 21.6 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|20092572|ref|NP_618647.1| - 9e-05 21.8 0.0 0.00011 21.5 0.0 1.1 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|20092572|ref|NP_618647.1| - 0.00082 18.7 0.0 0.00082 18.7 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|20092572|ref|NP_618647.1| - 0.0013 18.1 0.0 0.0013 18.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|20092572|ref|NP_618647.1| - 0.016 14.5 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain FMO-like PF00743.19 gi|20092572|ref|NP_618647.1| - 0.018 13.5 0.0 0.019 13.4 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Pyr_redox_3 PF13738.6 gi|20092572|ref|NP_618647.1| - 0.018 14.3 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|20092572|ref|NP_618647.1| - 0.027 14.5 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|20092572|ref|NP_618647.1| - 0.05 12.3 0.0 0.05 12.3 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.22 gi|20092572|ref|NP_618647.1| - 0.14 11.2 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NTP_transferase PF00483.23 gi|20092573|ref|NP_618648.1| - 5.2e-54 183.4 0.0 5.9e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|20092573|ref|NP_618648.1| - 1.2e-13 51.8 0.0 1.3e-13 51.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|20092573|ref|NP_618648.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase RmlD_sub_bind PF04321.17 gi|20092574|ref|NP_618649.1| - 3.7e-87 292.1 0.0 4.2e-87 291.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|20092574|ref|NP_618649.1| - 5.3e-16 58.8 0.0 8.7e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|20092574|ref|NP_618649.1| - 6.6e-09 35.6 0.0 9.1e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|20092574|ref|NP_618649.1| - 3.4e-08 33.0 0.0 3.4e-07 29.7 0.0 2.5 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|20092574|ref|NP_618649.1| - 4.7e-06 25.8 0.1 4.5e-05 22.6 0.1 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|20092575|ref|NP_618650.1| - 1.1e-82 278.1 0.0 1.3e-82 277.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|20092575|ref|NP_618650.1| - 1.5e-63 214.5 0.0 1.9e-63 214.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|20092575|ref|NP_618650.1| - 3.8e-24 85.4 0.0 6.5e-23 81.3 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|20092575|ref|NP_618650.1| - 2.5e-23 82.5 0.0 3.2e-23 82.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|20092575|ref|NP_618650.1| - 6e-15 55.1 0.3 8.1e-13 48.1 0.2 2.6 2 1 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|20092575|ref|NP_618650.1| - 8.8e-15 54.6 0.0 1.2e-14 54.1 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|20092575|ref|NP_618650.1| - 8.2e-07 29.1 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|20092575|ref|NP_618650.1| - 0.0063 16.1 0.0 0.0091 15.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|20092575|ref|NP_618650.1| - 0.17 11.3 0.0 1.4 8.3 0.0 2.0 1 1 0 1 1 1 0 short chain dehydrogenase dTDP_sugar_isom PF00908.17 gi|20092576|ref|NP_618651.1| - 1.1e-71 240.0 0.0 1.2e-71 239.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase MannoseP_isomer PF01050.18 gi|20092577|ref|NP_618652.1| - 6.1e-55 185.3 0.0 9.7e-55 184.6 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|20092577|ref|NP_618652.1| - 2.9e-53 181.0 0.0 5.1e-53 180.2 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|20092577|ref|NP_618652.1| - 7e-11 41.7 0.1 1.3e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|20092577|ref|NP_618652.1| - 1.8e-06 28.4 0.0 5.8e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.19 gi|20092577|ref|NP_618652.1| - 0.018 14.8 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AraC_binding PF02311.19 gi|20092577|ref|NP_618652.1| - 0.019 14.8 0.1 0.033 14.1 0.1 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|20092577|ref|NP_618652.1| - 0.067 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|20092577|ref|NP_618652.1| - 0.095 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Cupin NosD PF05048.13 gi|20092578|ref|NP_618653.1| - 6.5e-61 205.7 25.8 7.9e-61 205.4 25.8 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20092578|ref|NP_618653.1| - 4.3e-17 62.4 27.0 4.3e-17 62.4 25.8 1.6 1 1 0 1 1 1 1 Right handed beta helix region Pectinesterase PF01095.19 gi|20092578|ref|NP_618653.1| - 0.012 14.3 0.1 0.017 13.9 0.1 1.2 1 0 0 1 1 1 0 Pectinesterase DUF3963 PF13124.6 gi|20092578|ref|NP_618653.1| - 0.28 11.2 2.6 0.89 9.6 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3963) Methyltransf_31 PF13847.6 gi|20092579|ref|NP_618654.1| - 1.4e-40 138.5 0.0 2.2e-40 137.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092579|ref|NP_618654.1| - 9.2e-26 90.4 0.0 2.1e-25 89.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092579|ref|NP_618654.1| - 1.4e-24 86.5 0.0 3.4e-24 85.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092579|ref|NP_618654.1| - 1.2e-21 77.1 0.1 2e-21 76.4 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20092579|ref|NP_618654.1| - 9e-13 48.4 0.0 1.3e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092579|ref|NP_618654.1| - 1.9e-12 47.8 0.0 3.6e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20092579|ref|NP_618654.1| - 2.1e-12 47.3 0.0 3.9e-12 46.4 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|20092579|ref|NP_618654.1| - 3.2e-09 36.8 0.0 5.1e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|20092579|ref|NP_618654.1| - 2.2e-08 33.8 0.0 5.1e-08 32.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|20092579|ref|NP_618654.1| - 2.7e-07 30.3 0.0 3.9e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|20092579|ref|NP_618654.1| - 5.7e-07 29.6 0.0 8.9e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|20092579|ref|NP_618654.1| - 6e-06 26.3 0.2 1.2e-05 25.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|20092579|ref|NP_618654.1| - 3.3e-05 23.3 0.0 5.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|20092579|ref|NP_618654.1| - 7.3e-05 22.9 0.0 0.00014 22.0 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_15 PF09445.10 gi|20092579|ref|NP_618654.1| - 0.00013 21.6 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|20092579|ref|NP_618654.1| - 0.0014 18.1 0.0 0.0037 16.7 0.0 1.7 1 1 0 2 2 2 1 Putative methyltransferase TehB PF03848.14 gi|20092579|ref|NP_618654.1| - 0.0033 16.9 0.0 0.0062 16.0 0.0 1.4 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|20092579|ref|NP_618654.1| - 0.0033 17.4 0.0 0.0052 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|20092579|ref|NP_618654.1| - 0.0095 15.5 0.1 0.015 14.9 0.1 1.4 1 1 0 1 1 1 1 Histone methylation protein DOT1 GCD14 PF08704.10 gi|20092579|ref|NP_618654.1| - 0.015 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|20092579|ref|NP_618654.1| - 0.039 15.0 0.0 0.066 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 gi|20092579|ref|NP_618654.1| - 0.047 13.2 0.0 1 8.8 0.0 2.6 2 1 1 3 3 3 0 CheR methyltransferase, SAM binding domain GidB PF02527.15 gi|20092579|ref|NP_618654.1| - 0.054 12.8 0.0 0.12 11.7 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G UBA_6 PF18039.1 gi|20092579|ref|NP_618654.1| - 0.056 13.4 0.0 0.78 9.7 0.0 2.4 2 0 0 2 2 2 0 UBA-like domain ADH_zinc_N PF00107.26 gi|20092579|ref|NP_618654.1| - 0.063 13.3 0.0 0.17 11.9 0.0 1.8 2 0 0 2 2 1 0 Zinc-binding dehydrogenase Methyltr_RsmB-F PF01189.17 gi|20092579|ref|NP_618654.1| - 0.065 12.9 0.0 0.16 11.6 0.0 1.6 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F N6_N4_Mtase PF01555.18 gi|20092579|ref|NP_618654.1| - 0.074 12.7 0.0 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Methyltransf_3 PF01596.17 gi|20092579|ref|NP_618654.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase HTH_5 PF01022.20 gi|20092580|ref|NP_618655.1| - 3.5e-14 52.4 0.1 6.1e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20092580|ref|NP_618655.1| - 1.1e-11 44.6 0.0 1e-10 41.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|20092580|ref|NP_618655.1| - 0.00092 19.5 0.1 0.0019 18.5 0.1 1.5 1 1 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.6 gi|20092580|ref|NP_618655.1| - 0.0026 17.3 0.0 0.18 11.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|20092580|ref|NP_618655.1| - 0.024 14.6 0.1 0.052 13.5 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|20092580|ref|NP_618655.1| - 0.05 13.5 0.1 0.18 11.7 0.1 1.8 1 1 1 2 2 2 0 TFIIE alpha subunit Cdc6_C PF09079.11 gi|20092580|ref|NP_618655.1| - 0.058 13.4 0.1 0.09 12.8 0.1 1.4 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DHODB_Fe-S_bind PF10418.9 gi|20092582|ref|NP_618657.1| - 5.4e-13 48.5 4.0 1e-12 47.7 4.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|20092582|ref|NP_618657.1| - 3.2e-07 31.0 0.0 7.9e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|20092582|ref|NP_618657.1| - 0.0031 17.8 0.0 0.0053 17.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Cpn10 PF00166.21 gi|20092582|ref|NP_618657.1| - 0.028 14.5 1.6 0.046 13.8 0.1 2.2 2 0 0 2 2 2 0 Chaperonin 10 Kd subunit Pept_tRNA_hydro PF01195.19 gi|20092582|ref|NP_618657.1| - 0.085 12.8 0.1 0.18 11.8 0.1 1.5 2 0 0 2 2 2 0 Peptidyl-tRNA hydrolase SMN PF06003.12 gi|20092582|ref|NP_618657.1| - 0.21 10.8 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) Fer4_20 PF14691.6 gi|20092583|ref|NP_618658.1| - 1.4e-44 150.5 6.4 2.2e-44 149.8 6.4 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|20092583|ref|NP_618658.1| - 3.9e-36 124.8 3.0 5.2e-36 124.4 3.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|20092583|ref|NP_618658.1| - 5.7e-17 62.1 4.0 3.2e-08 34.0 0.3 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|20092583|ref|NP_618658.1| - 4.4e-12 45.9 0.5 1e-06 28.3 0.1 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|20092583|ref|NP_618658.1| - 7.4e-09 36.0 0.3 0.00086 19.7 0.1 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|20092583|ref|NP_618658.1| - 1.2e-08 34.5 3.4 0.0022 17.3 0.8 2.7 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|20092583|ref|NP_618658.1| - 1.3e-08 34.9 1.3 2.4e-08 34.1 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|20092583|ref|NP_618658.1| - 1.4e-07 31.2 3.5 3.3e-05 23.4 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|20092583|ref|NP_618658.1| - 2.5e-06 26.9 0.3 2.4e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|20092583|ref|NP_618658.1| - 1.2e-05 24.6 3.8 0.00037 19.7 0.0 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|20092583|ref|NP_618658.1| - 1.4e-05 24.3 1.2 1.4e-05 24.3 1.2 2.9 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|20092583|ref|NP_618658.1| - 2.4e-05 23.2 0.4 2.4e-05 23.2 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|20092583|ref|NP_618658.1| - 5.3e-05 23.0 0.4 0.0012 18.5 0.1 2.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|20092583|ref|NP_618658.1| - 0.00015 21.2 0.6 0.00051 19.4 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|20092583|ref|NP_618658.1| - 0.00039 19.8 0.0 0.85 9.0 0.0 2.9 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|20092583|ref|NP_618658.1| - 0.00051 20.1 1.4 4.4 7.4 0.1 4.4 5 0 0 5 5 5 1 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|20092583|ref|NP_618658.1| - 0.00098 18.9 0.1 0.34 10.6 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FMO-like PF00743.19 gi|20092583|ref|NP_618658.1| - 0.0034 15.9 0.0 0.99 7.7 0.0 2.2 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like Amino_oxidase PF01593.24 gi|20092583|ref|NP_618658.1| - 0.0066 15.8 0.1 0.0066 15.8 0.1 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase PALP PF00291.25 gi|20092583|ref|NP_618658.1| - 0.0076 15.7 0.2 2.5 7.4 0.0 2.5 1 1 1 2 2 2 1 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 gi|20092583|ref|NP_618658.1| - 0.0077 16.8 2.6 1.5 9.5 0.3 3.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Oxidored_nitro PF00148.19 gi|20092583|ref|NP_618658.1| - 0.012 14.3 2.4 1.3 7.6 0.0 2.4 2 1 1 3 3 3 0 Nitrogenase component 1 type Oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|20092583|ref|NP_618658.1| - 0.014 15.0 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.6 gi|20092583|ref|NP_618658.1| - 0.015 14.4 0.1 2.4 7.2 0.0 2.8 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_18 PF13746.6 gi|20092583|ref|NP_618658.1| - 0.022 15.0 1.0 0.022 15.0 1.0 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|20092583|ref|NP_618658.1| - 0.039 13.9 0.3 0.15 12.1 0.1 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|20092583|ref|NP_618658.1| - 0.065 13.1 0.3 0.4 10.6 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|20092583|ref|NP_618658.1| - 0.094 13.0 0.3 11 6.4 0.0 2.9 2 0 0 2 2 2 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|20092583|ref|NP_618658.1| - 0.095 11.7 1.5 0.11 11.5 0.2 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.21 gi|20092583|ref|NP_618658.1| - 0.34 10.9 5.9 5.4 7.1 0.0 2.7 3 0 0 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Trp_halogenase PF04820.14 gi|20092583|ref|NP_618658.1| - 0.42 9.4 3.8 0.15 10.8 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase TPR_2 PF07719.17 gi|20092584|ref|NP_618659.1| - 0.0022 17.9 2.3 18 5.8 0.0 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat DUF730 PF05325.11 gi|20092584|ref|NP_618659.1| - 0.062 13.3 1.1 0.13 12.3 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF730) WXG100 PF06013.12 gi|20092584|ref|NP_618659.1| - 0.33 11.2 2.3 2.2 8.6 0.2 2.9 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Nitroreductase PF00881.24 gi|20092585|ref|NP_618660.1| - 2.7e-30 105.7 1.7 3.2e-19 69.6 0.1 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|20092585|ref|NP_618660.1| - 2.1e-15 56.9 0.6 4.6e-06 26.4 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase IlvN PF07991.12 gi|20092586|ref|NP_618661.1| - 3.4e-81 270.7 0.9 4.8e-81 270.2 0.9 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|20092586|ref|NP_618661.1| - 6e-61 205.0 0.3 8.7e-61 204.4 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|20092586|ref|NP_618661.1| - 1.2e-08 34.5 0.0 2.2e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20092586|ref|NP_618661.1| - 2.7e-08 34.3 0.1 6.5e-08 33.1 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|20092586|ref|NP_618661.1| - 2.4e-07 31.1 0.1 4.2e-07 30.3 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|20092586|ref|NP_618661.1| - 0.00029 20.9 0.0 0.00058 20.0 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.19 gi|20092586|ref|NP_618661.1| - 0.0054 17.4 0.0 0.013 16.1 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain Nitro_FeMo-Co PF02579.17 gi|20092586|ref|NP_618661.1| - 0.0069 16.7 0.0 0.018 15.4 0.0 1.7 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Oxidored_nitro PF00148.19 gi|20092586|ref|NP_618661.1| - 0.012 14.4 0.1 0.085 11.6 0.0 2.0 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.16 gi|20092586|ref|NP_618661.1| - 0.012 15.2 0.0 0.028 14.1 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|20092586|ref|NP_618661.1| - 0.052 13.9 0.2 0.29 11.5 0.2 2.3 1 1 0 1 1 1 0 Mur ligase family, catalytic domain NAD_binding_7 PF13241.6 gi|20092586|ref|NP_618661.1| - 0.079 13.4 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|20092586|ref|NP_618661.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ALS_ss_C PF10369.9 gi|20092587|ref|NP_618662.1| - 9e-32 109.1 6.6 1.3e-31 108.6 2.6 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|20092587|ref|NP_618662.1| - 1e-18 66.9 1.1 1.7e-17 63.0 0.2 2.4 2 1 0 2 2 2 1 ACT domain ACT PF01842.25 gi|20092587|ref|NP_618662.1| - 1.3e-17 63.2 1.4 1.7e-16 59.7 0.3 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|20092587|ref|NP_618662.1| - 7.5e-06 26.4 1.3 7.5e-06 26.4 1.3 1.9 2 1 0 2 2 2 1 ACT domain YbbR PF07949.12 gi|20092587|ref|NP_618662.1| - 0.022 15.1 4.5 1.3 9.4 0.1 2.3 2 0 0 2 2 2 0 YbbR-like protein SLS PF14611.6 gi|20092587|ref|NP_618662.1| - 0.031 14.1 0.9 4.5 7.0 0.2 2.1 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator TraE PF05309.11 gi|20092587|ref|NP_618662.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 TraE protein TPP_enzyme_N PF02776.18 gi|20092588|ref|NP_618663.1| - 2.6e-61 206.2 0.2 1.7e-58 197.0 0.0 3.0 3 1 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|20092588|ref|NP_618663.1| - 1.3e-56 190.6 0.1 1.1e-55 187.6 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|20092588|ref|NP_618663.1| - 7.1e-53 178.0 0.1 1.7e-52 176.8 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|20092588|ref|NP_618663.1| - 0.028 14.1 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg XFP_N PF09364.10 gi|20092588|ref|NP_618663.1| - 0.088 11.6 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 XFP N-terminal domain E1_dh PF00676.20 gi|20092588|ref|NP_618663.1| - 0.09 11.7 0.1 0.65 8.9 0.0 2.3 3 0 0 3 3 3 0 Dehydrogenase E1 component HMGL-like PF00682.19 gi|20092589|ref|NP_618664.1| - 2e-75 253.8 1.0 2e-75 253.8 1.0 1.9 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|20092589|ref|NP_618664.1| - 2.8e-37 127.6 2.2 5.3e-37 126.7 2.2 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DRTGG PF07085.12 gi|20092589|ref|NP_618664.1| - 0.08 12.7 1.0 0.98 9.2 0.1 2.5 2 0 0 2 2 2 0 DRTGG domain Phage_integrase PF00589.22 gi|20092590|ref|NP_618665.1| - 9.8e-26 90.6 0.1 2.1e-25 89.5 0.1 1.5 1 0 0 1 1 1 1 Phage integrase family zinc_ribbon_2 PF13240.6 gi|20092590|ref|NP_618665.1| - 0.00059 19.5 2.7 0.001 18.7 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|20092590|ref|NP_618665.1| - 0.0011 19.0 0.6 0.0018 18.2 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF3435 PF11917.8 gi|20092590|ref|NP_618665.1| - 0.0011 18.0 0.1 0.0016 17.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) GAD PF02938.14 gi|20092590|ref|NP_618665.1| - 0.0018 18.5 0.7 0.091 13.0 0.0 3.4 3 0 0 3 3 3 1 GAD domain zinc_ribbon_15 PF17032.5 gi|20092590|ref|NP_618665.1| - 0.011 16.5 0.5 0.023 15.4 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbon family Phage_int_SAM_4 PF13495.6 gi|20092590|ref|NP_618665.1| - 0.019 15.4 0.5 0.088 13.3 0.1 2.3 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_6 PF18644.1 gi|20092590|ref|NP_618665.1| - 0.045 13.8 1.1 0.099 12.7 0.1 2.1 2 1 1 3 3 3 0 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|20092590|ref|NP_618665.1| - 0.059 13.7 0.2 0.25 11.7 0.2 2.1 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.6 gi|20092590|ref|NP_618665.1| - 0.1 12.0 2.0 0.18 11.2 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF1660 PF07874.11 gi|20092590|ref|NP_618665.1| - 0.13 12.7 0.4 2.2 8.8 0.1 2.6 2 0 0 2 2 2 0 Prophage protein (DUF1660) zf-CGNR PF11706.8 gi|20092591|ref|NP_618666.1| - 0.69 9.8 6.6 3.7 7.5 0.5 2.8 2 1 0 2 2 2 0 CGNR zinc finger Myosin_N PF02736.19 gi|20092593|ref|NP_618668.1| - 0.0041 16.9 3.7 0.011 15.5 3.7 1.7 1 0 0 1 1 1 1 Myosin N-terminal SH3-like domain DUF772 PF05598.11 gi|20092594|ref|NP_618669.1| - 9.3e-19 67.2 0.1 2.2e-18 66.1 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|20092595|ref|NP_618670.1| - 1.6e-21 76.9 4.6 2.1e-21 76.4 4.6 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092595|ref|NP_618670.1| - 2.2e-14 53.7 0.9 7.2e-14 51.9 0.9 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|20092595|ref|NP_618670.1| - 0.00041 20.4 0.0 0.00093 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092596|ref|NP_618671.1| - 3.8e-11 43.1 3.7 1.2e-10 41.4 3.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF2341 PF10102.9 gi|20092597|ref|NP_618672.1| - 1.2e-09 38.6 0.2 1.9e-09 38.0 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) PhageMin_Tail PF10145.9 gi|20092601|ref|NP_618676.1| - 2.6e-25 89.5 14.9 2.6e-25 89.5 14.9 4.4 3 2 1 4 4 4 2 Phage-related minor tail protein ANTAR PF03861.14 gi|20092601|ref|NP_618676.1| - 0.0069 16.2 0.1 1.2 9.1 0.0 2.5 2 0 0 2 2 2 2 ANTAR domain IHO1 PF15771.5 gi|20092602|ref|NP_618677.1| - 0.27 10.0 0.0 0.33 9.7 0.0 1.0 1 0 0 1 1 1 0 Interactor of HORMAD1 protein 1 DUF3168 PF11367.8 gi|20092605|ref|NP_618680.1| - 2.2e-08 34.3 0.0 3.2e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) HK97-gp10_like PF04883.12 gi|20092606|ref|NP_618681.1| - 0.00065 20.6 1.0 0.0089 17.0 0.1 2.1 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component THOC7 PF05615.13 gi|20092607|ref|NP_618682.1| - 0.0013 19.0 1.2 0.0015 18.9 1.2 1.0 1 0 0 1 1 1 1 Tho complex subunit 7 CLZ PF16526.5 gi|20092607|ref|NP_618682.1| - 0.0022 18.3 1.8 0.0025 18.1 0.8 1.6 1 1 1 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ABC_tran_CTD PF16326.5 gi|20092607|ref|NP_618682.1| - 0.0052 17.0 1.1 0.066 13.5 1.1 2.1 1 1 1 2 2 2 2 ABC transporter C-terminal domain Tmemb_cc2 PF10267.9 gi|20092607|ref|NP_618682.1| - 0.023 13.8 0.5 0.026 13.7 0.5 1.0 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein TMPIT PF07851.13 gi|20092607|ref|NP_618682.1| - 0.057 12.7 0.1 0.061 12.6 0.1 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.8 gi|20092607|ref|NP_618682.1| - 0.063 12.6 0.3 0.067 12.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4071 PF13281.6 gi|20092607|ref|NP_618682.1| - 0.096 11.7 0.4 0.11 11.5 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) Imm7 PF15585.6 gi|20092607|ref|NP_618682.1| - 0.14 12.5 0.3 0.86 9.9 0.2 1.9 1 1 1 2 2 2 0 Immunity protein 7 XhlA PF10779.9 gi|20092607|ref|NP_618682.1| - 0.15 12.3 0.5 0.24 11.7 0.5 1.5 1 1 0 1 1 1 0 Haemolysin XhlA TOBE_2 PF08402.10 gi|20092611|ref|NP_618686.1| - 0.014 15.6 0.1 0.018 15.2 0.1 1.2 1 0 0 1 1 1 0 TOBE domain DUF3486 PF11985.8 gi|20092611|ref|NP_618686.1| - 0.015 15.7 2.2 0.016 15.6 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) Linocin_M18 PF04454.12 gi|20092612|ref|NP_618687.1| - 2.5e-14 53.2 0.0 3.4e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Encapsulating protein for peroxidase DUF2190 PF09956.9 gi|20092613|ref|NP_618688.1| - 0.0068 16.9 3.1 0.015 15.8 3.1 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2190) TTKRSYEDQ PF10212.9 gi|20092614|ref|NP_618689.1| - 0.012 14.7 0.1 0.014 14.4 0.1 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein GrpE PF01025.19 gi|20092614|ref|NP_618689.1| - 0.012 15.3 2.8 0.018 14.7 2.8 1.3 1 0 0 1 1 1 0 GrpE Pollen_allerg_2 PF01620.16 gi|20092614|ref|NP_618689.1| - 0.012 15.8 2.1 0.012 15.8 2.1 1.7 1 1 0 1 1 1 0 Ribonuclease (pollen allergen) bZIP_1 PF00170.21 gi|20092614|ref|NP_618689.1| - 0.031 14.4 1.5 0.074 13.2 1.5 1.6 1 0 0 1 1 1 0 bZIP transcription factor GAS PF13851.6 gi|20092614|ref|NP_618689.1| - 0.054 12.8 0.7 0.054 12.8 0.7 1.7 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding VbhA PF18495.1 gi|20092614|ref|NP_618689.1| - 0.07 13.0 0.2 0.21 11.5 0.2 1.7 1 0 0 1 1 1 0 Antitoxin VbhA DivIC PF04977.15 gi|20092614|ref|NP_618689.1| - 0.079 12.7 0.8 0.2 11.5 0.8 1.6 1 0 0 1 1 1 0 Septum formation initiator TF_AP-2 PF03299.14 gi|20092614|ref|NP_618689.1| - 0.081 12.9 0.5 0.1 12.5 0.5 1.2 1 0 0 1 1 1 0 Transcription factor AP-2 Herpes_UL74 PF07982.12 gi|20092614|ref|NP_618689.1| - 0.085 11.8 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Herpes UL74 glycoproteins V_ATPase_I PF01496.19 gi|20092614|ref|NP_618689.1| - 0.085 10.8 0.5 0.097 10.6 0.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF5595 PF18077.1 gi|20092614|ref|NP_618689.1| - 0.1 12.7 0.5 0.26 11.4 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) OmpH PF03938.14 gi|20092614|ref|NP_618689.1| - 0.15 12.4 4.2 0.21 11.9 4.2 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HALZ PF02183.18 gi|20092614|ref|NP_618689.1| - 0.52 10.6 3.8 3.8 7.8 1.2 2.7 2 1 1 3 3 3 0 Homeobox associated leucine zipper APG6_N PF17675.1 gi|20092614|ref|NP_618689.1| - 1.9 9.0 6.0 0.46 11.0 1.0 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4277 PF14104.6 gi|20092616|ref|NP_618691.1| - 3.2e-38 130.4 0.0 7.7e-38 129.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|20092616|ref|NP_618691.1| - 1.6e-11 44.3 0.3 6.4e-11 42.3 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain ArgoMid PF16487.5 gi|20092616|ref|NP_618691.1| - 0.062 13.6 0.2 11 6.4 0.0 3.2 3 0 0 3 3 3 0 Mid domain of argonaute Phage_Mu_F PF04233.14 gi|20092619|ref|NP_618694.1| - 4.1e-10 40.4 0.1 1.7e-09 38.4 0.0 2.1 2 0 0 2 2 2 1 Phage Mu protein F like protein MerR_2 PF13591.6 gi|20092620|ref|NP_618695.1| - 0.087 12.7 0.1 0.56 10.1 0.0 2.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein Homez PF11569.8 gi|20092620|ref|NP_618695.1| - 0.18 11.3 0.0 0.44 10.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain leucine-zipper encoding, Homez HAMP_N3 PF18575.1 gi|20092621|ref|NP_618696.1| - 0.023 14.3 0.2 0.9 9.2 0.0 2.5 2 1 0 2 2 2 0 HAMP N-terminal domain 3 EAP30 PF04157.16 gi|20092621|ref|NP_618696.1| - 0.025 13.9 0.2 0.035 13.4 0.2 1.3 1 1 0 1 1 1 0 EAP30/Vps36 family Helo_like_N PF17111.5 gi|20092621|ref|NP_618696.1| - 0.025 13.9 0.0 0.03 13.7 0.0 1.1 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins CENP-Q PF13094.6 gi|20092621|ref|NP_618696.1| - 0.042 14.0 0.9 0.054 13.7 0.9 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Terminase_6 PF03237.15 gi|20092622|ref|NP_618697.1| - 2.4e-65 220.2 0.0 3.2e-65 219.8 0.0 1.2 1 0 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 gi|20092622|ref|NP_618697.1| - 3.7e-30 105.1 0.0 5.4e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 Terminase RNaseH-like domain HTH_Tnp_1_2 PF13022.6 gi|20092624|ref|NP_618699.1| - 2.5e-07 30.9 0.0 3.5e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|20092624|ref|NP_618699.1| - 6.1e-05 23.3 0.1 0.00011 22.5 0.1 1.4 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 gi|20092624|ref|NP_618699.1| - 0.00038 20.5 0.0 0.0014 18.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|20092624|ref|NP_618699.1| - 0.00068 19.4 0.1 0.0028 17.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|20092624|ref|NP_618699.1| - 0.0027 17.7 0.0 0.017 15.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|20092624|ref|NP_618699.1| - 0.061 13.0 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 MCM PF00493.23 gi|20092625|ref|NP_618700.1| - 3.2e-87 291.3 0.0 4.5e-87 290.9 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|20092625|ref|NP_618700.1| - 5.6e-31 107.0 0.1 2.4e-30 105.0 0.0 1.9 2 0 0 2 2 2 1 MCM OB domain MCM_lid PF17855.1 gi|20092625|ref|NP_618700.1| - 8.5e-27 93.4 0.4 2.4e-26 92.0 0.4 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|20092625|ref|NP_618700.1| - 1.5e-05 24.5 0.1 0.0002 20.8 0.0 2.2 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|20092625|ref|NP_618700.1| - 6.3e-05 23.5 0.0 0.0002 21.9 0.0 1.9 1 0 0 1 1 1 1 MCM N-terminal domain EAP30 PF04157.16 gi|20092625|ref|NP_618700.1| - 0.042 13.1 0.2 0.076 12.3 0.2 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family AAA_5 PF07728.14 gi|20092625|ref|NP_618700.1| - 0.078 13.0 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF3113 PF11310.8 gi|20092625|ref|NP_618700.1| - 0.12 12.4 0.2 0.31 11.0 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3113) D5_N PF08706.11 gi|20092626|ref|NP_618701.1| - 0.045 14.0 0.3 0.054 13.8 0.3 1.2 1 0 0 1 1 1 0 D5 N terminal like G_path_suppress PF15991.5 gi|20092626|ref|NP_618701.1| - 2.1 8.4 7.6 2.8 8.0 7.6 1.1 1 0 0 1 1 1 0 G-protein pathway suppressor IFT20 PF14931.6 gi|20092627|ref|NP_618702.1| - 0.032 14.4 0.2 0.61 10.3 0.2 2.0 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 SpoOE-like PF09388.10 gi|20092627|ref|NP_618702.1| - 0.048 13.6 0.5 0.1 12.5 0.5 1.5 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein Rx_N PF18052.1 gi|20092627|ref|NP_618702.1| - 0.062 13.6 0.2 0.15 12.3 0.1 1.6 2 0 0 2 2 2 0 Rx N-terminal domain MAD PF05557.13 gi|20092627|ref|NP_618702.1| - 0.082 11.3 0.3 0.097 11.0 0.2 1.3 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF4679 PF15728.5 gi|20092628|ref|NP_618703.1| - 0.16 11.0 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4679) DZR PF12773.7 gi|20092629|ref|NP_618704.1| - 0.0033 17.4 4.2 0.11 12.5 0.1 2.6 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|20092629|ref|NP_618704.1| - 0.018 14.8 6.4 0.29 10.9 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092629|ref|NP_618704.1| - 0.02 14.9 1.4 0.5 10.4 0.0 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain IBR PF01485.21 gi|20092629|ref|NP_618704.1| - 0.078 13.2 0.2 0.078 13.2 0.2 2.2 2 1 1 3 3 3 0 IBR domain, a half RING-finger domain DiS_P_DiS PF06750.13 gi|20092629|ref|NP_618704.1| - 0.093 12.9 0.1 7.2 6.8 0.0 2.5 3 0 0 3 3 3 0 Bacterial Peptidase A24 N-terminal domain zf_UBZ PF18439.1 gi|20092629|ref|NP_618704.1| - 0.1 12.2 0.5 5.5 6.7 0.0 2.6 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|20092629|ref|NP_618704.1| - 0.25 11.3 4.4 3.1 7.8 0.3 2.6 3 0 0 3 3 3 0 Putative transposase DNA-binding domain YhfH PF14149.6 gi|20092629|ref|NP_618704.1| - 0.81 9.7 4.5 18 5.4 0.2 3.2 3 0 0 3 3 3 0 YhfH-like protein TPR_2 PF07719.17 gi|20092635|ref|NP_618710.1| - 6.1e-05 22.8 1.2 0.00012 21.9 1.2 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20092635|ref|NP_618710.1| - 0.0013 18.4 0.9 0.0021 17.8 0.9 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092635|ref|NP_618710.1| - 0.0016 18.5 1.0 0.0016 18.5 1.0 1.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092635|ref|NP_618710.1| - 0.0057 17.4 0.4 0.3 12.0 0.2 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat PocR PF10114.9 gi|20092635|ref|NP_618710.1| - 0.019 14.8 0.1 0.028 14.2 0.1 1.3 1 0 0 1 1 1 0 Sensory domain found in PocR TPR_12 PF13424.6 gi|20092635|ref|NP_618710.1| - 0.022 15.0 0.8 0.11 12.8 0.8 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092635|ref|NP_618710.1| - 0.043 14.3 0.2 0.12 12.9 0.1 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat HemY_N PF07219.13 gi|20092635|ref|NP_618710.1| - 0.049 13.8 1.0 0.076 13.2 0.2 1.6 2 0 0 2 2 2 0 HemY protein N-terminus TPR_7 PF13176.6 gi|20092635|ref|NP_618710.1| - 0.12 12.5 0.0 0.34 11.0 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092635|ref|NP_618710.1| - 0.12 12.3 0.8 1.6 8.7 0.1 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092635|ref|NP_618710.1| - 0.27 11.9 1.4 0.71 10.6 0.4 2.1 2 1 0 2 2 2 0 Tetratricopeptide repeat HSDR_N PF04313.14 gi|20092636|ref|NP_618711.1| - 7.1e-14 52.2 3.6 1.2e-10 41.7 0.0 3.3 2 2 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|20092636|ref|NP_618711.1| - 2.4e-13 50.0 0.0 5.5e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.6 gi|20092636|ref|NP_618711.1| - 0.011 16.0 0.0 0.027 14.8 0.0 1.6 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily rve PF00665.26 gi|20092637|ref|NP_618712.1| - 2.6e-13 50.2 0.0 4.2e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20092637|ref|NP_618712.1| - 2.5e-05 23.9 0.2 6.1e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20092637|ref|NP_618712.1| - 9.3e-05 22.1 0.1 0.0049 16.6 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20092637|ref|NP_618712.1| - 0.033 13.6 0.0 0.065 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20092637|ref|NP_618712.1| - 0.039 14.1 0.1 0.1 12.8 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20092637|ref|NP_618712.1| - 0.054 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20092637|ref|NP_618712.1| - 0.11 12.3 0.3 0.35 10.7 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20092637|ref|NP_618712.1| - 0.11 12.2 0.3 0.56 10.0 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment NHL PF01436.21 gi|20092638|ref|NP_618713.1| - 3.6e-52 171.9 11.5 7.6e-11 41.5 0.1 6.5 6 0 0 6 6 6 6 NHL repeat PKD PF00801.20 gi|20092638|ref|NP_618713.1| - 3.1e-22 78.2 7.4 4.1e-12 45.8 0.3 2.5 2 0 0 2 2 2 2 PKD domain SGL PF08450.12 gi|20092638|ref|NP_618713.1| - 6.9e-19 68.4 4.2 7.7e-06 25.7 0.1 4.9 2 2 2 4 4 4 4 SMP-30/Gluconolactonase/LRE-like region DUF5128 PF17170.4 gi|20092638|ref|NP_618713.1| - 1.3e-18 67.2 10.3 6.7e-06 25.5 0.1 3.5 1 1 2 4 4 4 3 6-bladed beta-propeller SBBP PF06739.11 gi|20092638|ref|NP_618713.1| - 1.2e-16 60.4 30.2 0.00035 20.5 0.5 6.7 6 0 0 6 6 6 6 Beta-propeller repeat Phytase-like PF13449.6 gi|20092638|ref|NP_618713.1| - 3.8e-11 43.5 0.4 1.2e-05 25.4 0.0 4.8 1 1 2 4 4 4 2 Esterase-like activity of phytase SdiA-regulated PF06977.11 gi|20092638|ref|NP_618713.1| - 2e-06 27.2 2.8 0.0037 16.5 0.0 4.2 3 1 2 5 5 5 1 SdiA-regulated Ldl_recept_b PF00058.17 gi|20092638|ref|NP_618713.1| - 3.1e-05 24.4 0.0 17 6.0 0.0 5.2 4 1 0 4 4 4 0 Low-density lipoprotein receptor repeat class B DUF4934 PF16288.5 gi|20092638|ref|NP_618713.1| - 0.00016 21.6 2.1 0.73 9.8 0.1 3.6 3 1 1 4 4 4 3 Domain of unknown function (DUF4934) PKD_3 PF16820.5 gi|20092638|ref|NP_618713.1| - 0.0039 16.9 2.3 0.2 11.4 0.1 2.5 2 0 0 2 2 2 1 PKD-like domain PspB PF06667.12 gi|20092638|ref|NP_618713.1| - 0.21 11.6 0.2 0.54 10.3 0.2 1.6 1 0 0 1 1 1 0 Phage shock protein B DUF1952 PF09189.10 gi|20092638|ref|NP_618713.1| - 0.3 11.0 1.1 19 5.2 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF1952) Sigma_reg_N PF13800.6 gi|20092638|ref|NP_618713.1| - 6.2 7.2 7.1 11 6.4 0.5 2.7 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF2072 PF09845.9 gi|20092639|ref|NP_618714.1| - 0.058 13.7 0.0 0.074 13.3 0.0 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein DUF35_N PF12172.8 gi|20092639|ref|NP_618714.1| - 0.058 13.3 0.3 9 6.3 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) SHOCT PF09851.9 gi|20092640|ref|NP_618715.1| - 1.1e-09 37.7 1.2 2.9e-09 36.4 0.8 2.0 2 0 0 2 2 2 1 Short C-terminal domain DUF4429 PF14472.6 gi|20092640|ref|NP_618715.1| - 2.9e-07 31.0 0.0 5.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4429) FemAB PF02388.16 gi|20092642|ref|NP_618717.1| - 1.2e-08 34.3 9.8 0.00033 19.7 0.3 3.2 2 1 1 3 3 3 3 FemAB family Acetyltransf_6 PF13480.7 gi|20092642|ref|NP_618717.1| - 4.7e-08 33.3 0.0 6.8e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DDE_Tnp_IS1 PF03400.13 gi|20092643|ref|NP_618718.1| - 1.1e-15 58.2 0.8 1.3e-15 57.9 0.8 1.0 1 0 0 1 1 1 1 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|20092643|ref|NP_618718.1| - 0.011 16.0 0.1 0.014 15.6 0.1 1.3 1 1 0 1 1 1 0 DDE domain HTH_23 PF13384.6 gi|20092644|ref|NP_618719.1| - 4.7e-06 26.2 0.0 7.7e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20092644|ref|NP_618719.1| - 1.4e-05 24.9 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20092644|ref|NP_618719.1| - 0.00036 20.6 0.0 0.00052 20.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20092644|ref|NP_618719.1| - 0.0012 18.5 0.1 0.0056 16.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20092644|ref|NP_618719.1| - 0.0046 16.7 8.6 0.0073 16.0 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20092644|ref|NP_618719.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|20092644|ref|NP_618719.1| - 0.019 15.0 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix zf-Mss51 PF13824.6 gi|20092644|ref|NP_618719.1| - 0.026 14.6 2.9 0.026 14.6 2.9 1.6 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TnsD PF15978.5 gi|20092644|ref|NP_618719.1| - 0.029 13.3 0.2 0.054 12.5 0.2 1.5 1 1 0 1 1 1 0 Tn7-like transposition protein D Zn-ribbon_8 PF09723.10 gi|20092644|ref|NP_618719.1| - 0.03 14.4 2.2 0.7 10.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092644|ref|NP_618719.1| - 0.044 13.8 6.8 0.072 13.1 6.8 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1670 PF07900.11 gi|20092644|ref|NP_618719.1| - 0.073 12.4 0.0 0.08 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Rubredoxin PF00301.20 gi|20092644|ref|NP_618719.1| - 0.66 10.1 4.4 1.2 9.3 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin Rubredoxin_2 PF18073.1 gi|20092644|ref|NP_618719.1| - 7.4 6.4 9.8 4.5 7.1 2.1 2.5 2 0 0 2 2 2 0 Rubredoxin metal binding domain Peptidase_M42 PF05343.14 gi|20092645|ref|NP_618720.1| - 2.1e-117 391.3 0.3 2.4e-117 391.1 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|20092645|ref|NP_618720.1| - 1.1e-09 38.3 0.1 2e-09 37.5 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|20092645|ref|NP_618720.1| - 3.9e-05 23.4 0.0 0.0027 17.4 0.0 2.6 2 1 0 2 2 2 2 Peptidase family M28 Prefoldin_2 PF01920.20 gi|20092646|ref|NP_618721.1| - 7.2e-25 87.0 19.4 8e-25 86.9 19.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit T4SS PF07996.11 gi|20092646|ref|NP_618721.1| - 0.0051 17.3 11.7 0.0069 16.8 11.7 1.2 1 0 0 1 1 1 1 Type IV secretion system proteins UPF0147 PF03685.13 gi|20092646|ref|NP_618721.1| - 0.015 15.3 0.7 0.045 13.8 0.1 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0147) IMS PF00817.20 gi|20092646|ref|NP_618721.1| - 0.034 14.2 1.2 0.044 13.8 1.2 1.1 1 0 0 1 1 1 0 impB/mucB/samB family Snf7 PF03357.21 gi|20092646|ref|NP_618721.1| - 0.05 13.2 15.3 0.46 10.1 5.8 2.2 2 0 0 2 2 2 0 Snf7 Colicin_E5 PF12106.8 gi|20092646|ref|NP_618721.1| - 0.057 13.7 0.2 0.086 13.2 0.2 1.2 1 0 0 1 1 1 0 Colicin E5 ribonuclease domain GAS PF13851.6 gi|20092646|ref|NP_618721.1| - 0.43 9.9 18.8 23 4.3 6.6 2.0 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding PI_PP_I PF18363.1 gi|20092646|ref|NP_618721.1| - 0.51 10.5 5.7 0.88 9.8 0.3 2.1 1 1 0 2 2 2 0 Phosphoinositide phosphatase insertion domain DHR10 PF18595.1 gi|20092646|ref|NP_618721.1| - 0.72 9.9 20.1 2.5 8.2 6.9 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Nup54 PF13874.6 gi|20092646|ref|NP_618721.1| - 0.99 9.5 16.0 13 5.9 16.0 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 TSNAXIP1_N PF15739.5 gi|20092646|ref|NP_618721.1| - 1.1 9.7 12.6 0.94 9.9 4.9 2.1 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus YojJ PF10372.9 gi|20092646|ref|NP_618721.1| - 1.3 9.2 10.1 0.21 11.7 0.5 2.4 2 1 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus V_ATPase_I PF01496.19 gi|20092646|ref|NP_618721.1| - 1.4 6.7 7.5 1.8 6.4 7.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3450 PF11932.8 gi|20092646|ref|NP_618721.1| - 1.6 8.0 22.2 2 7.7 4.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|20092646|ref|NP_618721.1| - 1.8 8.6 19.8 6.5 6.8 19.8 1.7 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tweety PF04906.13 gi|20092646|ref|NP_618721.1| - 2.5 6.7 6.0 0.48 9.0 1.6 1.7 1 1 1 2 2 2 0 Tweety ZapB PF06005.12 gi|20092646|ref|NP_618721.1| - 2.7 8.5 19.7 4.7 7.7 6.6 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF3552 PF12072.8 gi|20092646|ref|NP_618721.1| - 2.8 7.3 21.6 0.26 10.7 6.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) NBD_C PF17042.5 gi|20092646|ref|NP_618721.1| - 3 8.3 7.6 4.2 7.8 7.6 1.2 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain APG6_N PF17675.1 gi|20092646|ref|NP_618721.1| - 5.8 7.5 22.8 25 5.4 17.3 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region Spc24 PF08286.11 gi|20092646|ref|NP_618721.1| - 6.2 7.1 15.0 11 6.4 6.3 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DHHA1 PF02272.19 gi|20092647|ref|NP_618722.1| - 2.3e-12 47.5 1.4 4e-12 46.7 1.4 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|20092647|ref|NP_618722.1| - 4.1e-12 46.2 0.1 8e-12 45.3 0.1 1.5 1 0 0 1 1 1 1 DHH family DDE_Tnp_IS66 PF03050.14 gi|20092648|ref|NP_618723.1| - 4.1e-72 243.0 0.0 6.1e-72 242.5 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|20092648|ref|NP_618723.1| - 5.9e-11 42.6 9.7 3e-10 40.3 9.7 2.3 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|20092648|ref|NP_618723.1| - 0.0041 16.5 2.7 1.9 8.0 0.9 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|20092648|ref|NP_618723.1| - 0.02 14.9 1.2 0.09 12.8 1.2 2.1 1 0 0 1 1 1 0 Double zinc ribbon MitMem_reg PF13012.6 gi|20092648|ref|NP_618723.1| - 0.021 15.2 0.4 1.4 9.4 0.0 2.8 3 0 0 3 3 3 0 Maintenance of mitochondrial structure and function SlyX PF04102.12 gi|20092648|ref|NP_618723.1| - 0.022 15.4 3.9 0.062 13.9 0.1 3.3 3 1 0 3 3 3 0 SlyX Mod_r PF07200.13 gi|20092648|ref|NP_618723.1| - 0.031 14.4 2.1 0.73 9.9 0.2 2.9 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DDE_Tnp_IS240 PF13610.6 gi|20092648|ref|NP_618723.1| - 0.063 13.5 0.4 0.69 10.1 0.2 2.3 2 0 0 2 2 2 0 DDE domain DASH_Spc19 PF08287.11 gi|20092648|ref|NP_618723.1| - 0.097 12.6 0.1 0.097 12.6 0.1 2.2 3 0 0 3 3 3 0 Spc19 DUF2034 PF10356.9 gi|20092648|ref|NP_618723.1| - 0.12 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) zinc_ribbon_2 PF13240.6 gi|20092648|ref|NP_618723.1| - 0.2 11.4 9.6 2.1 8.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|20092648|ref|NP_618723.1| - 0.26 11.2 4.0 3.5 7.6 0.1 2.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS YhfH PF14149.6 gi|20092648|ref|NP_618723.1| - 0.74 9.8 6.2 8.7 6.4 1.7 2.8 2 0 0 2 2 2 0 YhfH-like protein ABC_tran_CTD PF16326.5 gi|20092648|ref|NP_618723.1| - 3 8.2 7.1 1.1 9.5 0.5 2.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|20092648|ref|NP_618723.1| - 8.8 6.5 7.4 7.5 6.7 0.5 3.1 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family AMP-binding_C_2 PF14535.6 gi|20092649|ref|NP_618724.1| - 3.5e-32 110.6 0.2 9.6e-32 109.2 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|20092649|ref|NP_618724.1| - 4.3e-20 71.7 0.1 1.4e-19 70.0 0.0 1.7 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|20092649|ref|NP_618724.1| - 0.048 12.5 0.0 0.13 11.1 0.0 1.8 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ACT PF01842.25 gi|20092650|ref|NP_618725.1| - 2e-18 65.8 0.3 2e-08 33.8 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|20092650|ref|NP_618725.1| - 9.1e-07 29.4 0.3 0.0035 17.9 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|20092650|ref|NP_618725.1| - 1.4e-06 28.0 0.3 0.021 14.6 0.0 2.6 2 1 0 2 2 2 2 ACT domain MtrB PF05440.12 gi|20092650|ref|NP_618725.1| - 0.11 12.9 0.1 0.22 11.9 0.1 1.5 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF2103 PF09876.9 gi|20092651|ref|NP_618726.1| - 7e-38 128.5 0.9 8.7e-38 128.3 0.9 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Semialdhyde_dh PF01118.24 gi|20092651|ref|NP_618726.1| - 0.088 13.2 0.1 0.11 12.9 0.1 1.3 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF1464 PF07318.12 gi|20092652|ref|NP_618727.1| - 0.00012 21.4 0.2 0.00068 18.9 0.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) NYN PF01936.18 gi|20092653|ref|NP_618728.1| - 9e-24 84.6 0.0 1.2e-23 84.2 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 gi|20092653|ref|NP_618728.1| - 0.099 12.3 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Rhomboid PF01694.22 gi|20092655|ref|NP_618730.1| - 4.5e-34 117.6 14.1 4.5e-34 117.6 14.1 1.4 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|20092655|ref|NP_618730.1| - 7e-07 29.7 0.9 7e-07 29.7 0.9 2.3 1 1 1 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Prismane PF03063.20 gi|20092656|ref|NP_618731.1| - 3.5e-114 382.3 2.9 1.2e-95 321.1 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_21 PF14697.6 gi|20092656|ref|NP_618731.1| - 3.9e-07 30.1 7.1 3.9e-07 30.1 7.1 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20092656|ref|NP_618731.1| - 5.2e-07 29.7 8.3 5.2e-07 29.7 8.3 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092656|ref|NP_618731.1| - 2.7e-05 24.6 9.6 2.7e-05 24.6 9.6 2.7 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20092656|ref|NP_618731.1| - 0.00045 21.0 4.7 0.099 13.5 0.6 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20092656|ref|NP_618731.1| - 0.00049 19.8 25.3 0.00068 19.3 3.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092656|ref|NP_618731.1| - 0.00053 20.4 9.3 0.00053 20.4 9.3 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092656|ref|NP_618731.1| - 0.0011 19.0 3.3 0.0011 19.0 3.3 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20092656|ref|NP_618731.1| - 0.0017 18.8 0.1 0.0017 18.8 0.1 3.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092656|ref|NP_618731.1| - 0.0027 17.8 13.6 0.0027 17.8 13.6 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092656|ref|NP_618731.1| - 0.0071 16.4 22.4 0.03 14.4 1.0 4.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20092656|ref|NP_618731.1| - 0.035 14.6 1.2 0.035 14.6 1.2 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20092656|ref|NP_618731.1| - 0.038 14.2 8.0 0.1 12.8 0.4 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain VRR_NUC PF08774.11 gi|20092656|ref|NP_618731.1| - 0.044 13.9 0.0 0.13 12.4 0.0 1.7 1 1 0 1 1 1 0 VRR-NUC domain Fer4_20 PF14691.6 gi|20092656|ref|NP_618731.1| - 0.41 10.4 7.0 9.8 6.0 7.2 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|20092656|ref|NP_618731.1| - 2.3 8.8 9.7 1.6 9.3 0.8 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CO_dh PF02552.16 gi|20092657|ref|NP_618732.1| - 4.7e-32 111.1 0.0 5.5e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|20092657|ref|NP_618732.1| - 9.6e-08 31.9 0.1 1.5e-07 31.2 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.15 gi|20092658|ref|NP_618733.1| - 3.3e-61 205.7 0.1 4.9e-61 205.2 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CbiA PF01656.23 gi|20092659|ref|NP_618734.1| - 6.2e-18 65.1 0.3 1.9e-17 63.5 0.3 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20092659|ref|NP_618734.1| - 6.8e-13 48.9 0.0 1.4e-12 47.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|20092659|ref|NP_618734.1| - 1.4e-10 41.1 0.6 0.00046 19.7 0.1 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|20092659|ref|NP_618734.1| - 3.6e-09 36.5 2.0 2.8e-08 33.6 2.0 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|20092659|ref|NP_618734.1| - 1.1e-06 28.0 1.9 5.4e-06 25.8 0.2 2.2 1 1 1 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|20092659|ref|NP_618734.1| - 6.4e-06 25.8 0.1 0.017 14.6 0.0 2.9 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Toprim PF01751.22 gi|20092659|ref|NP_618734.1| - 0.00033 20.8 0.1 0.0015 18.8 0.0 2.0 2 0 0 2 2 2 1 Toprim domain AAA_26 PF13500.6 gi|20092659|ref|NP_618734.1| - 0.00038 20.4 1.2 0.18 11.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|20092659|ref|NP_618734.1| - 0.00078 19.4 0.6 0.35 10.7 0.0 2.3 2 0 0 2 2 2 2 NTPase AAA_16 PF13191.6 gi|20092659|ref|NP_618734.1| - 0.00097 19.6 0.1 0.0015 18.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|20092659|ref|NP_618734.1| - 0.00099 18.9 0.3 0.0055 16.5 0.3 2.1 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|20092659|ref|NP_618734.1| - 0.0035 17.4 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|20092659|ref|NP_618734.1| - 0.0043 16.8 0.2 0.0088 15.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|20092659|ref|NP_618734.1| - 0.0078 16.1 0.5 0.016 15.1 0.1 1.7 2 0 0 2 2 2 1 Adenylylsulphate kinase PRK PF00485.18 gi|20092659|ref|NP_618734.1| - 0.01 15.6 0.1 0.068 12.9 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.17 gi|20092659|ref|NP_618734.1| - 0.029 14.4 2.1 0.068 13.3 0.2 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain Toprim_4 PF13662.6 gi|20092659|ref|NP_618734.1| - 0.036 14.5 0.1 0.11 13.0 0.0 1.8 2 0 0 2 2 1 0 Toprim domain AAA_22 PF13401.6 gi|20092659|ref|NP_618734.1| - 0.051 13.8 0.3 0.12 12.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain HTH_19 PF12844.7 gi|20092659|ref|NP_618734.1| - 0.053 13.6 1.0 0.2 11.7 0.1 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|20092659|ref|NP_618734.1| - 0.053 14.0 0.1 0.13 12.7 0.0 1.8 1 1 0 2 2 2 0 ABC transporter DUF2075 PF09848.9 gi|20092659|ref|NP_618734.1| - 0.055 12.7 0.0 0.079 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) BORCS6 PF10157.9 gi|20092659|ref|NP_618734.1| - 0.061 13.5 0.2 0.093 13.0 0.2 1.2 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 6 MipZ PF09140.11 gi|20092659|ref|NP_618734.1| - 0.075 12.3 3.2 0.28 10.5 0.2 2.8 1 1 2 3 3 3 0 ATPase MipZ CLP1_P PF16575.5 gi|20092659|ref|NP_618734.1| - 0.076 12.8 0.1 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|20092659|ref|NP_618734.1| - 0.081 12.5 3.6 0.13 11.8 1.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Helicase_RecD PF05127.14 gi|20092659|ref|NP_618734.1| - 0.081 12.8 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Helicase PEPcase_2 PF14010.6 gi|20092659|ref|NP_618734.1| - 0.085 11.3 0.7 0.12 10.9 0.7 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase AAA_18 PF13238.6 gi|20092659|ref|NP_618734.1| - 0.1 13.1 0.6 0.2 12.2 0.4 1.9 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|20092659|ref|NP_618734.1| - 0.11 11.8 0.1 0.21 10.8 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.26 gi|20092659|ref|NP_618734.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|20092659|ref|NP_618734.1| - 0.16 12.3 2.9 0.86 9.9 2.9 2.3 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|20092659|ref|NP_618734.1| - 0.25 10.3 1.3 1.5 7.8 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|20092659|ref|NP_618734.1| - 0.26 10.9 2.8 1.4 8.5 0.3 2.4 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 gi|20092659|ref|NP_618734.1| - 0.39 9.8 1.4 0.64 9.1 0.3 1.8 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase CdhD PF03599.16 gi|20092660|ref|NP_618735.1| - 3.9e-93 312.2 2.3 8.4e-86 288.1 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.16 gi|20092661|ref|NP_618736.1| - 3.1e-158 526.5 0.1 3.7e-158 526.3 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|20092661|ref|NP_618736.1| - 6.8e-15 54.4 2.3 1.7e-14 53.1 2.3 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster MOFRL PF05161.13 gi|20092661|ref|NP_618736.1| - 0.021 15.0 0.2 0.048 13.9 0.2 1.5 1 0 0 1 1 1 0 MOFRL family Peripla_BP_4 PF13407.6 gi|20092661|ref|NP_618736.1| - 2.4 7.6 5.8 7.9 6.0 0.1 2.5 2 1 1 3 3 3 0 Periplasmic binding protein domain DUF1670 PF07900.11 gi|20092662|ref|NP_618737.1| - 5.2e-99 330.0 4.3 6.2e-99 329.8 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|20092662|ref|NP_618737.1| - 1.1e-05 25.1 0.1 0.18 11.6 0.0 4.0 3 1 1 4 4 4 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20092662|ref|NP_618737.1| - 9.2e-05 22.0 0.6 2.8 7.7 0.1 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_5 PF01022.20 gi|20092662|ref|NP_618737.1| - 0.00037 20.3 0.5 0.034 14.0 0.1 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|20092662|ref|NP_618737.1| - 0.0006 19.9 0.1 0.97 9.7 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|20092662|ref|NP_618737.1| - 0.00074 19.0 0.0 9.9 5.8 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|20092662|ref|NP_618737.1| - 0.00089 19.2 0.2 0.22 11.5 0.0 3.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20092662|ref|NP_618737.1| - 0.0021 17.9 0.4 0.025 14.4 0.3 2.6 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|20092662|ref|NP_618737.1| - 0.0037 17.3 0.1 8.4 6.5 0.0 3.2 2 1 1 3 3 3 1 Winged helix-turn helix HTH_11 PF08279.12 gi|20092662|ref|NP_618737.1| - 0.012 15.5 0.4 6.9 6.7 0.1 2.9 3 0 0 3 3 3 0 HTH domain Fe_dep_repress PF01325.19 gi|20092662|ref|NP_618737.1| - 0.013 15.7 1.0 4.7 7.5 0.3 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Phage_terminase PF10668.9 gi|20092662|ref|NP_618737.1| - 0.043 13.8 0.4 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Phage terminase small subunit Sigma70_r4 PF04545.16 gi|20092662|ref|NP_618737.1| - 0.052 13.1 0.2 2.6 7.6 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 GerE PF00196.19 gi|20092662|ref|NP_618737.1| - 0.078 12.5 1.1 11 5.7 0.0 3.7 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.12 gi|20092662|ref|NP_618737.1| - 0.1 12.4 0.1 1.6 8.6 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Tnp_4 PF13613.6 gi|20092662|ref|NP_618737.1| - 0.13 12.0 0.0 0.38 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease NAM-associated PF14303.6 gi|20092662|ref|NP_618737.1| - 0.62 10.8 4.0 11 6.8 0.4 2.1 2 0 0 2 2 2 0 No apical meristem-associated C-terminal domain DUF1670 PF07900.11 gi|20092663|ref|NP_618738.1| - 6.5e-88 293.8 0.2 8e-88 293.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_36 PF13730.6 gi|20092663|ref|NP_618738.1| - 3.6e-06 26.8 0.1 0.00079 19.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|20092663|ref|NP_618738.1| - 0.0011 19.1 0.1 0.18 12.0 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20092663|ref|NP_618738.1| - 0.0012 18.4 0.1 0.0075 15.8 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|20092663|ref|NP_618738.1| - 0.0015 18.3 0.0 6.2 6.8 0.0 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|20092663|ref|NP_618738.1| - 0.0021 18.0 0.6 0.0084 16.0 0.1 2.2 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|20092663|ref|NP_618738.1| - 0.0026 17.7 0.1 0.85 9.7 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|20092663|ref|NP_618738.1| - 0.0094 15.9 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Terminase_5 PF06056.12 gi|20092663|ref|NP_618738.1| - 0.011 15.6 0.4 1.9 8.5 0.1 3.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|20092663|ref|NP_618738.1| - 0.02 14.6 0.7 0.091 12.5 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|20092663|ref|NP_618738.1| - 0.043 13.5 1.5 10 5.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 TENA_THI-4 PF03070.16 gi|20092663|ref|NP_618738.1| - 0.048 13.5 0.1 1.9 8.2 0.0 2.6 3 0 0 3 3 3 0 TENA/THI-4/PQQC family MarR PF01047.22 gi|20092663|ref|NP_618738.1| - 0.058 13.3 0.2 0.18 11.7 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|20092663|ref|NP_618738.1| - 0.068 13.2 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20092663|ref|NP_618738.1| - 0.082 12.8 0.0 4 7.4 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|20092663|ref|NP_618738.1| - 0.15 11.9 0.1 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Glycos_transf_2 PF00535.26 gi|20092664|ref|NP_618739.1| - 1.2e-24 87.0 0.0 1.6e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|20092664|ref|NP_618739.1| - 9.8e-07 28.5 0.1 1.5e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|20092664|ref|NP_618739.1| - 1.3e-05 25.3 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|20092664|ref|NP_618739.1| - 0.0004 20.8 0.2 0.00091 19.7 0.0 1.7 2 1 1 3 3 3 1 Glycosyl transferase family 2 NMD3 PF04981.13 gi|20092665|ref|NP_618740.1| - 8.2e-56 189.2 0.8 1e-55 188.8 0.8 1.1 1 0 0 1 1 1 1 NMD3 family zf-tcix PF14952.6 gi|20092665|ref|NP_618740.1| - 0.11 12.2 3.3 3 7.5 0.0 2.5 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Prok-RING_1 PF14446.6 gi|20092665|ref|NP_618740.1| - 0.14 12.1 0.0 0.14 12.1 0.0 2.8 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 DUF2797 PF10977.8 gi|20092665|ref|NP_618740.1| - 1.7 8.5 4.3 2.4 8.0 3.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2797) DUF1610 PF07754.11 gi|20092665|ref|NP_618740.1| - 4.5 7.3 6.0 21 5.2 1.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) ADK_lid PF05191.14 gi|20092665|ref|NP_618740.1| - 4.9 7.2 7.9 2 8.5 0.1 3.0 3 0 0 3 3 3 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.6 gi|20092665|ref|NP_618740.1| - 5.4 6.9 9.7 37 4.2 6.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|20092665|ref|NP_618740.1| - 9.6 5.8 11.0 18 4.9 0.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain ATP-grasp_3 PF02655.14 gi|20092666|ref|NP_618741.1| - 4.2e-52 176.4 0.0 6e-52 175.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|20092666|ref|NP_618741.1| - 3e-11 43.2 0.0 4.4e-10 39.4 0.0 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.6 gi|20092666|ref|NP_618741.1| - 2.6e-10 40.1 0.0 1.4e-09 37.8 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|20092666|ref|NP_618741.1| - 2.3e-05 24.1 0.0 0.00024 20.7 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|20092666|ref|NP_618741.1| - 8.8e-05 22.2 0.0 0.00064 19.4 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|20092666|ref|NP_618741.1| - 0.00066 19.0 0.0 0.0014 17.9 0.0 1.5 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|20092666|ref|NP_618741.1| - 0.011 15.4 0.0 0.024 14.2 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 gi|20092666|ref|NP_618741.1| - 0.02 14.6 0.0 3.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|20092666|ref|NP_618741.1| - 0.029 13.9 0.0 0.14 11.7 0.0 1.9 1 1 0 1 1 1 0 ATP-grasp domain TFIIE_alpha PF02002.17 gi|20092667|ref|NP_618742.1| - 5.8e-18 64.7 0.7 9.4e-18 64.0 0.7 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Mab-21 PF03281.14 gi|20092667|ref|NP_618742.1| - 0.024 13.9 0.1 0.03 13.6 0.1 1.1 1 0 0 1 1 1 0 Mab-21 protein RepL PF05732.11 gi|20092667|ref|NP_618742.1| - 0.027 13.9 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TF_Zn_Ribbon PF08271.12 gi|20092667|ref|NP_618742.1| - 0.045 13.3 3.3 0.095 12.2 2.5 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.11 gi|20092667|ref|NP_618742.1| - 0.081 12.9 0.3 0.081 12.9 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HD PF01966.22 gi|20092668|ref|NP_618743.1| - 3.2e-15 56.4 0.5 5.1e-15 55.8 0.5 1.3 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|20092668|ref|NP_618743.1| - 0.00028 20.7 0.4 0.0006 19.6 0.4 1.6 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HDOD PF08668.12 gi|20092668|ref|NP_618743.1| - 0.0081 15.6 0.1 0.02 14.4 0.1 1.7 1 1 0 1 1 1 1 HDOD domain Proteasome PF00227.26 gi|20092669|ref|NP_618744.1| - 3.2e-55 186.6 2.3 3.6e-55 186.4 2.3 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4191 PF13829.6 gi|20092669|ref|NP_618744.1| - 0.092 12.1 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) KH_7 PF17214.3 gi|20092670|ref|NP_618745.1| - 1.1e-28 99.0 1.3 1.7e-27 95.1 0.1 2.9 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|20092670|ref|NP_618745.1| - 8.5e-25 87.2 0.0 2.5e-24 85.7 0.0 1.9 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|20092670|ref|NP_618745.1| - 4.4e-15 55.4 0.0 1e-14 54.2 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|20092670|ref|NP_618745.1| - 5.6e-15 55.9 0.4 2.4e-13 50.5 0.4 3.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|20092670|ref|NP_618745.1| - 1.7e-13 50.5 0.0 2.8e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|20092670|ref|NP_618745.1| - 1.2e-10 41.3 0.1 2.5e-10 40.2 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|20092670|ref|NP_618745.1| - 1.1e-05 25.2 0.6 8.9e-05 22.2 0.2 2.7 3 0 0 3 3 3 1 KH domain Lactamase_B_3 PF13483.6 gi|20092670|ref|NP_618745.1| - 4.1e-05 23.5 0.0 0.00012 22.0 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|20092670|ref|NP_618745.1| - 0.0066 16.2 2.2 0.071 12.9 0.4 2.7 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|20092670|ref|NP_618745.1| - 0.014 15.3 0.0 0.033 14.0 0.0 1.6 1 0 0 1 1 1 0 KH domain DUF3489 PF11994.8 gi|20092670|ref|NP_618745.1| - 0.12 12.5 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HAD_2 PF13419.6 gi|20092671|ref|NP_618746.1| - 5.7e-26 91.7 0.0 7.1e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20092671|ref|NP_618746.1| - 9.9e-12 45.6 0.0 7.5e-11 42.7 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20092671|ref|NP_618746.1| - 0.024 15.0 0.0 0.027 14.9 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Tubulin PF00091.25 gi|20092672|ref|NP_618747.1| - 5.3e-38 131.2 0.1 9.3e-38 130.4 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|20092672|ref|NP_618747.1| - 4.3e-34 116.7 2.2 6.5e-34 116.1 0.1 2.4 3 1 0 3 3 3 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|20092672|ref|NP_618747.1| - 3.5 6.7 6.8 5.3 6.1 2.3 2.2 1 1 0 2 2 2 0 Tubulin like Pterin_bind PF00809.22 gi|20092673|ref|NP_618748.1| - 1e-09 38.4 0.1 2.1e-08 34.1 0.1 2.5 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|20092673|ref|NP_618748.1| - 1.8e-09 37.7 0.0 4.1e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) CdhD PF03599.16 gi|20092673|ref|NP_618748.1| - 0.001 17.9 0.0 0.0027 16.5 0.0 1.6 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit H_PPase PF03030.16 gi|20092675|ref|NP_618750.1| - 1.1e-269 896.6 52.1 1.3e-269 896.4 52.1 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase H_PPase PF03030.16 gi|20092676|ref|NP_618751.1| - 8.8e-271 900.2 52.1 1e-270 900.0 52.1 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase MFS_1 PF07690.16 gi|20092677|ref|NP_618752.1| - 2.8e-34 118.6 46.7 1.3e-26 93.4 16.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|20092677|ref|NP_618752.1| - 0.00051 18.6 0.3 0.00084 17.9 0.3 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|20092677|ref|NP_618752.1| - 0.0015 17.4 8.5 0.0015 17.4 8.5 2.0 2 0 0 2 2 2 1 MFS_1 like family MFS_1 PF07690.16 gi|20092678|ref|NP_618753.1| - 2.9e-36 125.1 37.6 3.6e-26 91.9 9.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|20092678|ref|NP_618753.1| - 0.076 11.9 10.7 0.02 13.7 0.6 2.3 2 0 0 2 2 2 0 MFS_1 like family PUA PF01472.20 gi|20092679|ref|NP_618754.1| - 4e-20 71.5 1.2 6.5e-20 70.9 1.2 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|20092679|ref|NP_618754.1| - 0.00023 21.4 0.4 0.0007 19.9 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|20092679|ref|NP_618754.1| - 0.00037 21.1 0.4 0.0011 19.7 0.4 1.8 1 1 0 1 1 1 1 Pre-PUA-like domain UPF0113 PF03657.13 gi|20092679|ref|NP_618754.1| - 0.0016 18.7 0.1 0.0027 17.9 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain KH_2 PF07650.17 gi|20092679|ref|NP_618754.1| - 0.048 13.5 2.2 0.66 9.8 0.1 2.7 3 0 0 3 3 3 0 KH domain SepF PF04472.12 gi|20092680|ref|NP_618755.1| - 6.2e-13 48.8 1.5 9.4e-13 48.2 1.5 1.3 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|20092680|ref|NP_618755.1| - 0.017 14.7 0.1 0.024 14.3 0.0 1.3 1 1 0 1 1 1 0 Putative transposase, YhgA-like zf-ZPR1 PF03367.13 gi|20092681|ref|NP_618756.1| - 2.2e-36 125.1 0.2 2.8e-36 124.8 0.2 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Nse4-Nse3_bdg PF15412.6 gi|20092681|ref|NP_618756.1| - 0.12 12.5 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE tRNA-synt_2b PF00587.25 gi|20092682|ref|NP_618757.1| - 7.3e-27 94.5 0.0 1e-26 94.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|20092682|ref|NP_618757.1| - 1.2e-20 73.4 0.1 2.3e-20 72.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|20092682|ref|NP_618757.1| - 2.6e-16 59.6 1.0 5.9e-16 58.4 0.2 2.0 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Zf_RING PF16744.5 gi|20092684|ref|NP_618759.1| - 0.012 15.7 0.4 0.018 15.1 0.4 1.4 1 1 0 1 1 1 0 KIAA1045 RING finger C1_1 PF00130.22 gi|20092684|ref|NP_618759.1| - 0.013 15.4 2.2 0.02 14.8 2.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.12 gi|20092684|ref|NP_618759.1| - 0.015 15.3 2.5 0.019 14.9 2.5 1.2 1 0 0 1 1 1 0 zinc-ribbons DeoC PF01791.9 gi|20092685|ref|NP_618760.1| - 7.3e-62 209.0 0.1 8.5e-62 208.8 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PK PF00224.21 gi|20092686|ref|NP_618761.1| - 1.8e-123 411.8 1.4 2.4e-123 411.4 1.4 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|20092686|ref|NP_618761.1| - 8.4e-25 87.3 0.0 3.6e-24 85.2 0.0 2.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|20092686|ref|NP_618761.1| - 8.9e-05 21.7 1.5 0.00016 20.9 0.5 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Metalloenzyme PF01676.18 gi|20092686|ref|NP_618761.1| - 0.2 11.0 0.1 0.73 9.1 0.0 1.9 2 1 0 2 2 2 0 Metalloenzyme superfamily HNH_repeat PF18780.1 gi|20092686|ref|NP_618761.1| - 1.4 8.8 3.1 6 6.8 0.1 2.6 2 0 0 2 2 2 0 Homing endonuclease repeat TPR_1 PF00515.28 gi|20092688|ref|NP_618763.1| - 4.1e-13 48.5 0.7 3.8e-11 42.3 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092688|ref|NP_618763.1| - 2.8e-10 39.6 0.3 9.2e-09 34.8 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20092688|ref|NP_618763.1| - 6.6e-10 38.3 0.0 8.5e-09 34.9 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092688|ref|NP_618763.1| - 1.2e-09 37.7 2.0 2e-08 33.8 1.3 2.0 1 1 1 2 2 2 2 TPR repeat TPR_17 PF13431.6 gi|20092688|ref|NP_618763.1| - 2.4e-05 24.4 0.3 0.084 13.3 0.0 3.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092688|ref|NP_618763.1| - 0.0001 22.8 0.0 0.00022 21.8 0.0 1.6 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20092688|ref|NP_618763.1| - 0.00017 21.4 0.0 0.00063 19.6 0.0 2.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092688|ref|NP_618763.1| - 0.00017 21.7 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20092688|ref|NP_618763.1| - 0.00032 20.7 0.9 0.0005 20.1 0.9 1.3 1 0 0 1 1 1 1 Fis1 C-terminal tetratricopeptide repeat TPR_12 PF13424.6 gi|20092688|ref|NP_618763.1| - 0.00078 19.7 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092688|ref|NP_618763.1| - 0.0013 19.2 0.0 0.0054 17.2 0.0 1.8 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20092688|ref|NP_618763.1| - 0.0015 18.3 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092688|ref|NP_618763.1| - 0.01 16.4 0.0 0.075 13.7 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat PPR PF01535.20 gi|20092688|ref|NP_618763.1| - 0.017 15.4 0.3 0.043 14.1 0.3 1.7 1 0 0 1 1 1 0 PPR repeat DUF5113 PF17140.4 gi|20092688|ref|NP_618763.1| - 0.095 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) MIT PF04212.18 gi|20092688|ref|NP_618763.1| - 0.13 12.3 2.2 0.4 10.8 1.6 1.9 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_1 PF00515.28 gi|20092689|ref|NP_618764.1| - 4e-13 48.6 0.6 1.5e-09 37.2 0.1 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20092689|ref|NP_618764.1| - 2.2e-10 40.1 1.3 1.3e-07 31.2 0.6 2.3 1 1 1 2 2 2 2 TPR repeat TPR_2 PF07719.17 gi|20092689|ref|NP_618764.1| - 1.2e-09 37.6 1.2 3e-07 30.0 0.1 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20092689|ref|NP_618764.1| - 7e-09 35.2 0.2 6e-06 26.1 0.1 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20092689|ref|NP_618764.1| - 6.4e-06 26.6 2.9 0.0082 16.6 0.1 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20092689|ref|NP_618764.1| - 1.3e-05 25.3 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20092689|ref|NP_618764.1| - 2.2e-05 24.9 0.1 0.014 16.2 0.0 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20092689|ref|NP_618764.1| - 8.4e-05 22.7 0.4 0.074 13.5 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|20092689|ref|NP_618764.1| - 0.0002 22.0 0.1 0.00043 20.9 0.0 1.6 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20092689|ref|NP_618764.1| - 0.01 16.1 0.1 0.026 14.8 0.0 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20092689|ref|NP_618764.1| - 0.04 14.5 0.0 1.5 9.6 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DAO PF01266.24 gi|20092690|ref|NP_618765.1| - 1.5e-12 47.8 1.3 2.8e-05 23.9 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|20092690|ref|NP_618765.1| - 1.7e-11 44.0 4.2 6.2e-11 42.1 0.5 2.7 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|20092690|ref|NP_618765.1| - 7.8e-10 38.7 0.0 1.3e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|20092690|ref|NP_618765.1| - 2.5e-08 33.1 0.5 6e-08 31.8 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|20092690|ref|NP_618765.1| - 5.4e-08 32.3 0.3 1.1e-07 31.4 0.3 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|20092690|ref|NP_618765.1| - 7.9e-07 29.2 0.2 6.1e-06 26.4 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|20092690|ref|NP_618765.1| - 4.1e-06 26.2 0.2 8.9e-06 25.0 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|20092690|ref|NP_618765.1| - 2.7e-05 23.4 3.0 0.00066 18.8 3.0 2.5 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|20092690|ref|NP_618765.1| - 3.1e-05 23.4 3.0 0.00022 20.6 0.1 2.5 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|20092690|ref|NP_618765.1| - 6.5e-05 22.3 0.1 0.00017 20.9 0.0 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|20092690|ref|NP_618765.1| - 0.00017 21.0 0.1 0.0035 16.7 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|20092690|ref|NP_618765.1| - 0.00019 20.5 0.1 0.27 10.1 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.23 gi|20092690|ref|NP_618765.1| - 0.014 15.4 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.6 gi|20092690|ref|NP_618765.1| - 0.022 14.7 0.4 0.38 10.7 0.4 2.3 1 1 0 1 1 1 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|20092690|ref|NP_618765.1| - 0.033 14.1 0.0 0.29 11.0 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|20092690|ref|NP_618765.1| - 0.035 13.4 1.3 0.17 11.1 0.5 2.6 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|20092690|ref|NP_618765.1| - 0.046 14.3 0.3 11 6.7 0.0 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_NifH PF00142.18 gi|20092691|ref|NP_618766.1| - 1.4e-125 418.2 0.9 1.6e-125 418.1 0.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|20092691|ref|NP_618766.1| - 2.6e-12 46.9 0.0 5.5e-12 45.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20092691|ref|NP_618766.1| - 1.9e-08 34.4 1.4 2.6e-08 34.0 0.3 1.8 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|20092691|ref|NP_618766.1| - 3.2e-07 30.1 0.2 6.2e-06 25.8 0.1 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|20092691|ref|NP_618766.1| - 5.2e-06 25.9 0.1 9.8e-06 25.0 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|20092691|ref|NP_618766.1| - 0.003 17.3 0.1 0.0055 16.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|20092691|ref|NP_618766.1| - 0.0043 16.1 0.2 0.0059 15.6 0.2 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|20092691|ref|NP_618766.1| - 0.0099 16.3 0.3 0.053 13.9 0.1 2.1 2 0 0 2 2 2 1 RNA helicase CBP_BcsQ PF06564.12 gi|20092691|ref|NP_618766.1| - 0.013 15.0 0.2 0.075 12.5 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|20092691|ref|NP_618766.1| - 0.014 15.1 0.2 0.026 14.1 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MipZ PF09140.11 gi|20092691|ref|NP_618766.1| - 0.041 13.2 0.6 0.11 11.7 0.1 1.8 2 0 0 2 2 2 0 ATPase MipZ DUF87 PF01935.17 gi|20092691|ref|NP_618766.1| - 0.087 12.9 0.4 0.16 12.1 0.1 1.6 2 0 0 2 2 2 0 Helicase HerA, central domain ATP_bind_1 PF03029.17 gi|20092691|ref|NP_618766.1| - 0.087 12.6 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|20092691|ref|NP_618766.1| - 0.096 13.0 0.1 0.22 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|20092691|ref|NP_618766.1| - 0.14 12.6 0.5 0.3 11.6 0.2 1.6 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|20092691|ref|NP_618766.1| - 0.19 12.1 0.0 0.36 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain P-II PF00543.22 gi|20092692|ref|NP_618767.1| - 1.7e-30 105.6 1.1 2e-30 105.4 1.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II MEKHLA PF08670.11 gi|20092692|ref|NP_618767.1| - 0.13 12.1 0.0 0.18 11.7 0.0 1.1 1 0 0 1 1 1 0 MEKHLA domain P-II PF00543.22 gi|20092693|ref|NP_618768.1| - 1.2e-32 112.5 0.1 1.7e-32 112.1 0.1 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|20092694|ref|NP_618769.1| - 3.1e-134 447.7 0.1 3.8e-134 447.4 0.1 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase XET_C PF06955.12 gi|20092694|ref|NP_618769.1| - 0.0091 15.8 0.1 0.023 14.6 0.1 1.6 1 0 0 1 1 1 1 Xyloglucan endo-transglycosylase (XET) C-terminus Oxidored_nitro PF00148.19 gi|20092695|ref|NP_618770.1| - 4.6e-128 427.3 0.0 5.2e-128 427.2 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|20092696|ref|NP_618771.1| - 7e-116 387.2 0.1 8.2e-116 387.0 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|20092697|ref|NP_618772.1| - 2.3e-141 471.2 0.0 2.8e-141 470.8 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase BPD_transp_1 PF00528.22 gi|20092698|ref|NP_618773.1| - 2.3e-20 73.1 14.2 2.3e-20 73.1 14.2 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|20092699|ref|NP_618774.1| - 5.9e-30 104.6 0.0 1.6e-29 103.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|20092699|ref|NP_618774.1| - 1e-08 35.3 0.2 0.00012 22.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20092699|ref|NP_618774.1| - 0.00015 22.1 0.3 0.002 18.4 0.3 2.2 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.10 gi|20092699|ref|NP_618774.1| - 0.00036 20.6 0.0 0.00085 19.4 0.0 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|20092699|ref|NP_618774.1| - 0.00058 19.4 0.1 0.016 14.7 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20092699|ref|NP_618774.1| - 0.013 16.0 0.5 0.027 15.0 0.5 1.7 1 1 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.20 gi|20092699|ref|NP_618774.1| - 0.017 13.8 0.0 0.027 13.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA PF00004.29 gi|20092699|ref|NP_618774.1| - 0.03 14.8 0.1 0.17 12.3 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|20092699|ref|NP_618774.1| - 0.067 13.4 0.1 0.36 11.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain OB_MalK PF17912.1 gi|20092699|ref|NP_618774.1| - 0.088 13.7 0.0 0.41 11.5 0.0 2.3 2 0 0 2 2 2 0 MalK OB fold domain Med17 PF10156.9 gi|20092699|ref|NP_618774.1| - 0.1 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Subunit 17 of Mediator complex Methyltransf_11 PF08241.12 gi|20092700|ref|NP_618775.1| - 1e-27 96.6 0.0 1.6e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092700|ref|NP_618775.1| - 2.4e-25 89.0 0.0 4.2e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092700|ref|NP_618775.1| - 3.4e-22 78.9 0.0 4.4e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092700|ref|NP_618775.1| - 1.4e-16 60.7 0.0 2.3e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092700|ref|NP_618775.1| - 7.7e-15 55.5 0.0 1.2e-14 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092700|ref|NP_618775.1| - 6e-14 51.9 0.0 8e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|20092700|ref|NP_618775.1| - 4.6e-09 36.3 0.0 6.3e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20092700|ref|NP_618775.1| - 2.7e-08 33.6 0.1 4.9e-08 32.7 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|20092700|ref|NP_618775.1| - 2.1e-07 30.7 0.0 3.5e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|20092700|ref|NP_618775.1| - 2.4e-07 30.6 0.0 3.3e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|20092700|ref|NP_618775.1| - 4.4e-07 30.0 0.0 6.1e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|20092700|ref|NP_618775.1| - 2.1e-05 24.0 0.0 3.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|20092700|ref|NP_618775.1| - 0.00013 21.4 0.0 0.00016 21.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|20092700|ref|NP_618775.1| - 0.00063 18.9 0.0 0.00081 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|20092700|ref|NP_618775.1| - 0.00098 18.6 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.15 gi|20092700|ref|NP_618775.1| - 0.0024 17.2 0.0 0.0041 16.5 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 gi|20092700|ref|NP_618775.1| - 0.0044 17.0 0.0 0.0084 16.1 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|20092700|ref|NP_618775.1| - 0.0061 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TPMT PF05724.11 gi|20092700|ref|NP_618775.1| - 0.011 15.4 0.0 0.024 14.3 0.0 1.6 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DREV PF05219.12 gi|20092700|ref|NP_618775.1| - 0.014 14.5 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase GCD14 PF08704.10 gi|20092700|ref|NP_618775.1| - 0.023 14.4 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N6_N4_Mtase PF01555.18 gi|20092700|ref|NP_618775.1| - 0.035 13.8 0.0 0.19 11.4 0.0 2.0 2 1 0 2 2 2 0 DNA methylase Methyltransf_4 PF02390.17 gi|20092700|ref|NP_618775.1| - 0.045 13.2 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 Putative methyltransferase Mur_ligase PF01225.25 gi|20092700|ref|NP_618775.1| - 0.081 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain AdoMet_MTase PF07757.13 gi|20092700|ref|NP_618775.1| - 0.12 12.7 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_16 PF10294.9 gi|20092700|ref|NP_618775.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase DUF938 PF06080.12 gi|20092700|ref|NP_618775.1| - 0.14 11.9 0.0 0.19 11.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) SBP_bac_5 PF00496.22 gi|20092701|ref|NP_618776.1| - 1.9e-76 257.5 0.0 2.3e-76 257.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle HCBP_related PF06594.11 gi|20092701|ref|NP_618776.1| - 0.12 12.3 0.2 0.32 11.0 0.2 1.7 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain BPD_transp_1 PF00528.22 gi|20092702|ref|NP_618777.1| - 1.6e-43 148.6 10.4 1.6e-43 148.6 10.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|20092702|ref|NP_618777.1| - 1.4 9.6 7.7 0.15 12.7 1.0 2.5 3 0 0 3 3 3 0 Renin receptor-like protein BPD_transp_1 PF00528.22 gi|20092703|ref|NP_618778.1| - 3.9e-28 98.4 11.5 3.9e-28 98.4 11.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.8 gi|20092703|ref|NP_618778.1| - 7.4 6.0 14.7 0.25 10.8 6.0 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3169) ABC_tran PF00005.27 gi|20092704|ref|NP_618779.1| - 1.9e-23 83.5 0.0 2.6e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20092704|ref|NP_618779.1| - 5.5e-20 71.7 0.1 1.2e-19 70.6 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|20092704|ref|NP_618779.1| - 0.00055 20.2 0.0 0.0021 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|20092704|ref|NP_618779.1| - 0.0029 17.5 0.0 1.4 8.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20092704|ref|NP_618779.1| - 0.0055 17.1 0.0 0.0066 16.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|20092704|ref|NP_618779.1| - 0.0061 16.1 0.0 0.0098 15.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|20092704|ref|NP_618779.1| - 0.0069 15.8 0.0 0.039 13.3 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|20092704|ref|NP_618779.1| - 0.0076 16.2 0.0 0.019 14.9 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|20092704|ref|NP_618779.1| - 0.014 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|20092704|ref|NP_618779.1| - 0.019 15.0 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|20092704|ref|NP_618779.1| - 0.02 14.1 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|20092704|ref|NP_618779.1| - 0.031 14.2 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|20092704|ref|NP_618779.1| - 0.033 13.8 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|20092704|ref|NP_618779.1| - 0.039 14.0 0.0 0.091 12.8 0.0 1.5 2 0 0 2 2 2 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|20092704|ref|NP_618779.1| - 0.04 13.6 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|20092704|ref|NP_618779.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain SMC_N PF02463.19 gi|20092704|ref|NP_618779.1| - 0.094 12.1 0.0 0.33 10.4 0.0 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.22 gi|20092704|ref|NP_618779.1| - 0.15 12.5 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|20092705|ref|NP_618780.1| - 1.4e-28 100.1 0.0 2.1e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20092705|ref|NP_618780.1| - 1.2e-13 51.4 1.4 2.5e-13 50.3 1.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20092705|ref|NP_618780.1| - 1.3e-06 28.4 0.7 0.0007 19.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20092705|ref|NP_618780.1| - 0.00017 21.9 0.3 0.0011 19.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092705|ref|NP_618780.1| - 0.0029 18.0 0.1 0.0057 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.14 gi|20092705|ref|NP_618780.1| - 0.0032 17.4 0.2 0.0064 16.4 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|20092705|ref|NP_618780.1| - 0.0058 17.1 0.0 0.17 12.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|20092705|ref|NP_618780.1| - 0.006 16.6 0.2 0.013 15.6 0.2 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.6 gi|20092705|ref|NP_618780.1| - 0.042 14.4 0.7 0.089 13.3 0.1 1.8 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|20092705|ref|NP_618780.1| - 0.046 13.6 0.1 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|20092705|ref|NP_618780.1| - 0.047 14.3 0.0 0.095 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|20092705|ref|NP_618780.1| - 0.088 12.6 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TniB PF05621.11 gi|20092705|ref|NP_618780.1| - 0.12 11.8 1.9 0.9 8.9 0.3 2.2 2 0 0 2 2 2 0 Bacterial TniB protein PRK PF00485.18 gi|20092705|ref|NP_618780.1| - 0.12 12.1 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Gate PF07670.14 gi|20092706|ref|NP_618781.1| - 1.2e-08 35.3 13.8 0.00021 21.6 3.0 2.8 2 1 1 3 3 3 2 Nucleoside recognition Plus-3 PF03126.18 gi|20092709|ref|NP_618784.1| - 0.1 13.2 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 Plus-3 domain sCache_2 PF17200.4 gi|20092710|ref|NP_618785.1| - 5.6e-52 175.7 8.2 2.8e-23 82.5 0.3 3.4 3 0 0 3 3 3 3 Single Cache domain 2 SBP_bac_3 PF00497.20 gi|20092710|ref|NP_618785.1| - 2e-44 151.7 0.3 2.5e-21 76.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 dCache_2 PF08269.11 gi|20092710|ref|NP_618785.1| - 5.1e-42 144.1 6.9 8.2e-32 110.6 2.9 3.8 2 1 0 2 2 2 2 Cache domain NMT1 PF09084.11 gi|20092710|ref|NP_618785.1| - 6e-05 23.1 0.0 0.6 10.0 0.0 3.0 2 0 0 2 2 2 2 NMT1/THI5 like sCache_3_2 PF17203.4 gi|20092710|ref|NP_618785.1| - 0.0022 18.1 0.0 3.1 7.9 0.0 3.5 3 0 0 3 3 3 1 Single cache domain 3 DctP PF03480.13 gi|20092710|ref|NP_618785.1| - 0.019 14.3 0.0 2.1 7.6 0.0 2.8 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein, family 7 SPDY PF03771.16 gi|20092710|ref|NP_618785.1| - 0.032 14.2 0.0 12 5.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF317) Cystatin PF00031.21 gi|20092710|ref|NP_618785.1| - 0.062 13.6 0.0 0.25 11.7 0.0 2.1 1 0 0 1 1 1 0 Cystatin domain DUF3834 PF12916.7 gi|20092710|ref|NP_618785.1| - 0.077 12.2 0.0 2.7 7.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3834) Ca_bind_SSO6904 PF18249.1 gi|20092710|ref|NP_618785.1| - 0.18 12.2 0.5 1.3 9.4 0.1 2.6 2 0 0 2 2 2 0 Calcium binding protein SSO6904 Methyltransf_11 PF08241.12 gi|20092711|ref|NP_618786.1| - 1.8e-20 73.4 0.0 4e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092711|ref|NP_618786.1| - 7.2e-20 71.5 0.0 1.4e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092711|ref|NP_618786.1| - 5.8e-18 65.1 0.0 8.5e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092711|ref|NP_618786.1| - 2e-15 56.8 0.0 2.9e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20092711|ref|NP_618786.1| - 5.8e-15 55.8 0.0 1.1e-14 54.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092711|ref|NP_618786.1| - 2.6e-11 43.6 0.0 4.7e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|20092711|ref|NP_618786.1| - 1.6e-08 34.2 0.0 8e-08 31.9 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.14 gi|20092711|ref|NP_618786.1| - 4.5e-06 26.3 0.0 9.3e-06 25.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|20092711|ref|NP_618786.1| - 1.4e-05 24.5 0.0 2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_32 PF13679.6 gi|20092711|ref|NP_618786.1| - 7.4e-05 22.8 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20092711|ref|NP_618786.1| - 0.00063 19.6 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|20092711|ref|NP_618786.1| - 0.00072 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|20092711|ref|NP_618786.1| - 0.0015 18.4 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|20092711|ref|NP_618786.1| - 0.0019 17.5 0.0 0.0029 16.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|20092711|ref|NP_618786.1| - 0.027 13.9 0.0 0.054 12.9 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|20092711|ref|NP_618786.1| - 0.044 13.4 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF938 PF06080.12 gi|20092711|ref|NP_618786.1| - 0.047 13.4 0.0 0.11 12.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF938) RrnaAD PF00398.20 gi|20092711|ref|NP_618786.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DOT1 PF08123.13 gi|20092711|ref|NP_618786.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 UPF0020 PF01170.18 gi|20092711|ref|NP_618786.1| - 0.21 11.3 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 P-II PF00543.22 gi|20092712|ref|NP_618787.1| - 1.2e-31 109.3 0.2 1.4e-31 109.1 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|20092713|ref|NP_618788.1| - 4.9e-122 407.5 36.0 5.5e-122 407.3 36.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family SBP_bac_8 PF13416.6 gi|20092713|ref|NP_618788.1| - 0.024 14.5 0.1 0.034 14.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Ammonium_transp PF00909.21 gi|20092714|ref|NP_618789.1| - 3e-102 342.3 38.1 3.4e-102 342.1 38.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family ABC_tran PF00005.27 gi|20092715|ref|NP_618790.1| - 2.1e-32 112.5 0.0 3.1e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092715|ref|NP_618790.1| - 3.5e-13 50.1 4.3 5.7e-06 26.4 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092715|ref|NP_618790.1| - 3.4e-08 33.2 2.7 2.2e-06 27.3 2.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20092715|ref|NP_618790.1| - 3.4e-06 27.0 2.7 5.2e-05 23.1 0.3 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|20092715|ref|NP_618790.1| - 4e-06 26.5 0.0 9e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20092715|ref|NP_618790.1| - 8.2e-06 26.5 0.4 1.3e-05 25.8 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20092715|ref|NP_618790.1| - 0.0015 19.0 0.2 0.0063 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|20092715|ref|NP_618790.1| - 0.0016 18.7 2.0 0.014 15.7 2.0 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|20092715|ref|NP_618790.1| - 0.0059 16.8 0.0 0.11 12.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|20092715|ref|NP_618790.1| - 0.0063 16.6 0.2 0.58 10.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|20092715|ref|NP_618790.1| - 0.0067 15.4 0.0 0.01 14.8 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|20092715|ref|NP_618790.1| - 0.015 15.2 0.2 0.03 14.2 0.2 1.5 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|20092715|ref|NP_618790.1| - 0.02 14.9 1.8 0.67 9.8 0.1 2.2 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|20092715|ref|NP_618790.1| - 0.03 13.0 0.1 2.5 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|20092715|ref|NP_618790.1| - 0.046 12.5 0.2 0.79 8.4 0.1 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|20092715|ref|NP_618790.1| - 0.049 13.8 0.0 0.12 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|20092715|ref|NP_618790.1| - 0.056 12.9 2.7 0.071 12.5 0.4 1.9 2 0 0 2 2 2 0 Bacterial TniB protein AAA_30 PF13604.6 gi|20092715|ref|NP_618790.1| - 0.063 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|20092715|ref|NP_618790.1| - 0.064 12.4 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Mg_chelatase PF01078.21 gi|20092715|ref|NP_618790.1| - 0.066 12.6 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|20092715|ref|NP_618790.1| - 0.069 13.0 0.7 0.21 11.5 0.7 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|20092715|ref|NP_618790.1| - 0.076 12.7 0.1 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|20092715|ref|NP_618790.1| - 0.082 12.7 0.0 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Adeno_IVa2 PF02456.15 gi|20092715|ref|NP_618790.1| - 0.1 11.4 0.1 0.2 10.4 0.1 1.5 1 0 0 1 1 1 0 Adenovirus IVa2 protein T2SSE PF00437.20 gi|20092715|ref|NP_618790.1| - 0.11 11.5 0.1 0.21 10.6 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF815 PF05673.13 gi|20092715|ref|NP_618790.1| - 0.17 11.0 1.5 0.29 10.3 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Peptidase_S9 PF00326.21 gi|20092716|ref|NP_618791.1| - 1.1e-13 51.2 0.0 2.8e-06 27.0 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|20092716|ref|NP_618791.1| - 1.1e-10 41.2 0.0 2e-08 33.8 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|20092716|ref|NP_618791.1| - 7.7e-07 28.9 0.0 2.2e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|20092716|ref|NP_618791.1| - 1.8e-05 25.5 0.0 2.4e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|20092716|ref|NP_618791.1| - 9.8e-05 22.1 0.0 0.38 10.4 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|20092716|ref|NP_618791.1| - 0.00013 21.9 0.0 0.00069 19.5 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|20092716|ref|NP_618791.1| - 0.013 15.5 0.0 0.2 11.5 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal FecCD PF01032.18 gi|20092717|ref|NP_618792.1| - 2.8e-84 282.8 36.6 3.4e-84 282.5 36.6 1.0 1 0 0 1 1 1 1 FecCD transport family CytochromB561_N PF09786.9 gi|20092717|ref|NP_618792.1| - 0.28 10.1 0.7 0.38 9.7 0.7 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal DUF2627 PF11118.8 gi|20092717|ref|NP_618792.1| - 1.1 9.8 6.8 0.5 11.0 1.2 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) Peripla_BP_2 PF01497.18 gi|20092718|ref|NP_618793.1| - 5.6e-37 127.6 0.0 7.9e-37 127.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein AraC_binding PF02311.19 gi|20092719|ref|NP_618794.1| - 2.1e-17 63.3 0.1 7.9e-17 61.4 0.1 1.8 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 gi|20092719|ref|NP_618794.1| - 6.9e-09 35.3 0.1 1.1e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 Cupin domain 3-HAO PF06052.12 gi|20092719|ref|NP_618794.1| - 0.0047 16.6 0.0 0.005 16.5 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_1 PF00190.22 gi|20092719|ref|NP_618794.1| - 0.038 13.6 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.12 gi|20092719|ref|NP_618794.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) FeS PF04060.13 gi|20092720|ref|NP_618795.1| - 3e-14 52.3 2.0 5.9e-14 51.4 2.0 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.7 gi|20092720|ref|NP_618795.1| - 1.3e-05 25.2 0.0 3.1e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TBP PF00352.21 gi|20092720|ref|NP_618795.1| - 5.1e-05 23.2 0.0 9.7e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) HTH_5 PF01022.20 gi|20092720|ref|NP_618795.1| - 0.0014 18.4 0.0 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family YhfH PF14149.6 gi|20092720|ref|NP_618795.1| - 0.037 14.0 0.7 0.075 13.0 0.7 1.5 1 0 0 1 1 1 0 YhfH-like protein DUF4393 PF14337.6 gi|20092720|ref|NP_618795.1| - 0.043 13.6 0.3 0.087 12.6 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4393) CLTH PF10607.9 gi|20092720|ref|NP_618795.1| - 0.091 12.7 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain ArsR PF09824.9 gi|20092720|ref|NP_618795.1| - 0.1 12.2 0.8 0.66 9.6 0.1 2.0 2 0 0 2 2 2 0 ArsR transcriptional regulator FeS PF04060.13 gi|20092721|ref|NP_618796.1| - 1.9e-12 46.6 1.3 4e-12 45.6 1.3 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.7 gi|20092721|ref|NP_618796.1| - 2.6e-08 33.8 0.0 6.5e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20092721|ref|NP_618796.1| - 6.7e-06 25.9 0.0 1.7e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TBP PF00352.21 gi|20092721|ref|NP_618796.1| - 0.021 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) DrsE PF02635.15 gi|20092722|ref|NP_618797.1| - 2.7e-20 72.9 0.0 3e-20 72.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 gi|20092723|ref|NP_618798.1| - 3.2e-11 43.6 0.0 3.7e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|20092723|ref|NP_618798.1| - 0.029 14.5 0.0 0.053 13.6 0.0 1.5 1 1 0 1 1 1 0 DsrH like protein DsrH PF04077.12 gi|20092724|ref|NP_618799.1| - 1.9e-08 34.3 0.0 2.5e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.15 gi|20092724|ref|NP_618799.1| - 0.094 13.1 0.0 0.72 10.2 0.0 2.0 1 1 0 1 1 1 0 DsrE/DsrF-like family Wyosine_form PF08608.12 gi|20092725|ref|NP_618800.1| - 0.031 14.6 0.0 0.061 13.7 0.0 1.5 1 0 0 1 1 1 0 Wyosine base formation Peripla_BP_2 PF01497.18 gi|20092726|ref|NP_618801.1| - 0.0068 16.0 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_25 PF13649.6 gi|20092728|ref|NP_618803.1| - 1.4e-14 54.6 0.0 5.5e-13 49.4 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092728|ref|NP_618803.1| - 2.1e-11 43.8 0.0 6.5e-11 42.2 0.0 1.8 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092728|ref|NP_618803.1| - 2.3e-08 34.6 0.0 1.4e-07 32.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092728|ref|NP_618803.1| - 2.4e-07 31.4 0.0 6.9e-07 29.9 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20092728|ref|NP_618803.1| - 2.9e-07 29.8 0.0 4.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|20092728|ref|NP_618803.1| - 2.4e-06 27.5 0.0 4.4e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|20092728|ref|NP_618803.1| - 1.4e-05 24.5 0.0 2.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|20092728|ref|NP_618803.1| - 0.00011 21.8 0.0 0.00031 20.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain TehB PF03848.14 gi|20092728|ref|NP_618803.1| - 0.001 18.5 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|20092728|ref|NP_618803.1| - 0.0013 18.6 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|20092728|ref|NP_618803.1| - 0.0016 17.8 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|20092728|ref|NP_618803.1| - 0.005 16.5 0.0 0.011 15.3 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|20092728|ref|NP_618803.1| - 0.008 15.6 0.3 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|20092728|ref|NP_618803.1| - 0.016 14.5 0.0 0.044 13.1 0.0 1.7 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|20092728|ref|NP_618803.1| - 0.029 14.4 0.0 0.079 12.9 0.0 1.6 1 1 1 2 2 2 0 Methyltransferase domain Met_10 PF02475.16 gi|20092728|ref|NP_618803.1| - 0.043 13.6 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein SBP_bac_3 PF00497.20 gi|20092728|ref|NP_618803.1| - 0.069 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 AAA_21 PF13304.6 gi|20092729|ref|NP_618804.1| - 1.8e-05 24.7 0.1 2.3e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20092729|ref|NP_618804.1| - 0.0065 16.2 0.5 0.008 15.9 0.5 1.1 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|20092729|ref|NP_618804.1| - 0.031 13.7 0.1 0.042 13.3 0.1 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CRCB PF02537.15 gi|20092730|ref|NP_618805.1| - 1.9e-23 82.5 9.1 2.3e-23 82.3 9.1 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) ThrE PF06738.12 gi|20092730|ref|NP_618805.1| - 0.34 10.2 7.8 0.45 9.9 1.3 2.1 1 1 1 2 2 2 0 Putative threonine/serine exporter Vma12 PF11712.8 gi|20092730|ref|NP_618805.1| - 0.79 9.8 5.3 0.87 9.6 0.7 2.1 1 1 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase ThrE_2 PF12821.7 gi|20092730|ref|NP_618805.1| - 0.84 9.8 8.6 5.8 7.1 0.5 2.2 2 0 0 2 2 2 0 Threonine/Serine exporter, ThrE DUF190 PF02641.15 gi|20092731|ref|NP_618806.1| - 1.2e-38 131.3 0.3 1.4e-38 131.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 UPF0060 PF02694.15 gi|20092732|ref|NP_618807.1| - 1.1e-27 96.4 0.1 1.6e-27 95.8 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family ArsP_1 PF03773.13 gi|20092733|ref|NP_618808.1| - 3e-80 269.5 23.5 3.8e-80 269.2 23.5 1.0 1 0 0 1 1 1 1 Predicted permease UPF0542 PF15086.6 gi|20092733|ref|NP_618808.1| - 0.69 9.9 6.3 33 4.5 0.2 3.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0542 Thioredoxin_3 PF13192.6 gi|20092734|ref|NP_618809.1| - 2.3e-30 104.4 1.2 2.5e-30 104.3 1.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|20092734|ref|NP_618809.1| - 9.3e-05 22.6 0.1 0.00015 21.9 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|20092734|ref|NP_618809.1| - 0.0027 17.9 0.5 0.0097 16.1 0.3 1.7 1 1 1 2 2 2 2 Thioredoxin ArsD PF06953.11 gi|20092734|ref|NP_618809.1| - 0.025 14.9 0.0 0.048 14.0 0.0 1.5 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DGC PF08859.11 gi|20092735|ref|NP_618810.1| - 4.2e-32 110.4 0.5 5.2e-32 110.1 0.5 1.1 1 0 0 1 1 1 1 DGC domain HTH_5 PF01022.20 gi|20092736|ref|NP_618811.1| - 1e-13 50.9 0.0 4.4e-13 48.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20092736|ref|NP_618811.1| - 4.2e-11 42.8 0.0 5.1e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|20092736|ref|NP_618811.1| - 0.0012 19.0 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Cdc6_C PF09079.11 gi|20092736|ref|NP_618811.1| - 0.0081 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain HTH_CodY PF08222.11 gi|20092736|ref|NP_618811.1| - 0.034 13.7 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|20092736|ref|NP_618811.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ArsP_1 PF03773.13 gi|20092737|ref|NP_618812.1| - 6.2e-66 222.5 19.9 7.1e-66 222.3 19.9 1.0 1 0 0 1 1 1 1 Predicted permease DUF3937 PF13073.6 gi|20092737|ref|NP_618812.1| - 0.12 12.5 0.4 0.12 12.5 0.4 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3937) OST3_OST6 PF04756.13 gi|20092737|ref|NP_618812.1| - 2.8 7.2 8.2 0.22 10.8 2.5 2.0 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 gi|20092738|ref|NP_618813.1| - 6.9e-28 96.5 4.3 7.7e-28 96.4 4.3 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.11 gi|20092738|ref|NP_618813.1| - 0.00015 22.1 0.1 0.00021 21.6 0.1 1.3 1 1 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD BON PF04972.17 gi|20092738|ref|NP_618813.1| - 0.0053 17.0 2.2 0.18 12.1 0.1 2.2 2 0 0 2 2 2 1 BON domain Thioredoxin PF00085.20 gi|20092738|ref|NP_618813.1| - 0.0064 16.5 0.3 0.0064 16.5 0.3 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|20092738|ref|NP_618813.1| - 0.0094 16.2 2.2 0.027 14.7 2.2 1.9 1 1 0 1 1 1 1 Glutaredoxin BAT PF15915.5 gi|20092738|ref|NP_618813.1| - 0.012 15.5 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 GAF and HTH_10 associated domain FtsK_alpha PF17854.1 gi|20092738|ref|NP_618813.1| - 0.02 15.0 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 FtsK alpha domain Thioredoxin_4 PF13462.6 gi|20092738|ref|NP_618813.1| - 0.023 14.9 1.3 1 9.5 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin DUF1611 PF07755.11 gi|20092738|ref|NP_618813.1| - 0.024 13.9 0.4 0.026 13.8 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Thioredoxin_2 PF13098.6 gi|20092738|ref|NP_618813.1| - 0.065 13.7 0.8 0.53 10.8 0.8 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain DUF971 PF06155.12 gi|20092738|ref|NP_618813.1| - 0.066 13.9 0.1 0.093 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF971) DUF1335 PF07056.11 gi|20092738|ref|NP_618813.1| - 0.099 12.7 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1335) Usp PF00582.26 gi|20092740|ref|NP_618815.1| - 3.3e-41 141.1 0.5 2.9e-22 79.7 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family rRNA_proc-arch PF13234.6 gi|20092740|ref|NP_618815.1| - 0.035 14.1 0.5 0.06 13.3 0.5 1.4 1 0 0 1 1 1 0 rRNA-processing arch domain DNA_photolyase PF00875.18 gi|20092740|ref|NP_618815.1| - 0.043 13.8 0.1 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 DNA photolyase Flu_B_M2 PF04772.12 gi|20092740|ref|NP_618815.1| - 0.09 13.0 0.2 0.2 11.9 0.2 1.5 1 0 0 1 1 1 0 Influenza B matrix protein 2 (BM2) Vir_act_alpha_C PF10400.9 gi|20092740|ref|NP_618815.1| - 0.19 12.4 1.4 0.34 11.6 0.4 1.9 2 1 0 2 2 2 0 Virulence activator alpha C-term SBF PF01758.16 gi|20092741|ref|NP_618816.1| - 1.1e-45 155.8 25.8 2e-45 154.9 20.5 2.3 2 0 0 2 2 2 2 Sodium Bile acid symporter family DUF4179 PF13786.6 gi|20092741|ref|NP_618816.1| - 0.76 10.3 5.9 6.8 7.2 0.8 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) CMD PF02627.20 gi|20092742|ref|NP_618817.1| - 3.2e-22 78.4 0.1 4.1e-22 78.0 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF302 PF03625.14 gi|20092743|ref|NP_618818.1| - 7.1e-24 83.5 0.1 1.1e-23 82.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Sun2_CC2 PF18580.1 gi|20092743|ref|NP_618818.1| - 0.053 13.7 0.0 0.096 12.9 0.0 1.4 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 Methyltransf_25 PF13649.6 gi|20092747|ref|NP_618822.1| - 2.1e-15 57.2 0.0 3.5e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092747|ref|NP_618822.1| - 1.2e-13 51.6 0.0 1.9e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092747|ref|NP_618822.1| - 1.4e-13 51.3 0.0 2.1e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20092747|ref|NP_618822.1| - 1.2e-12 47.7 0.2 3.7e-12 46.1 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|20092747|ref|NP_618822.1| - 1.4e-11 44.4 0.0 2.2e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092747|ref|NP_618822.1| - 4.3e-10 39.7 0.0 5.2e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092747|ref|NP_618822.1| - 1.4e-06 27.8 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20092747|ref|NP_618822.1| - 1.4e-05 24.7 0.0 2.8e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20092747|ref|NP_618822.1| - 2.2e-05 24.0 0.0 3.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|20092747|ref|NP_618822.1| - 9.2e-05 22.3 0.0 0.00013 21.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20092747|ref|NP_618822.1| - 0.00093 18.7 0.0 0.0013 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|20092747|ref|NP_618822.1| - 0.0011 18.7 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|20092747|ref|NP_618822.1| - 0.0025 17.3 0.0 0.0071 15.8 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Pox_MCEL PF03291.16 gi|20092747|ref|NP_618822.1| - 0.003 16.7 0.1 0.011 14.9 0.1 1.8 1 1 0 1 1 1 1 mRNA capping enzyme Methyltransf_18 PF12847.7 gi|20092747|ref|NP_618822.1| - 0.006 16.5 0.1 0.011 15.7 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|20092747|ref|NP_618822.1| - 0.042 12.8 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.10 gi|20092747|ref|NP_618822.1| - 0.059 12.9 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TPMT PF05724.11 gi|20092747|ref|NP_618822.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) HTH_5 PF01022.20 gi|20092748|ref|NP_618823.1| - 4.1e-12 45.8 0.1 6.6e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20092748|ref|NP_618823.1| - 0.0002 21.4 0.0 0.00034 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain CMD PF02627.20 gi|20092749|ref|NP_618824.1| - 3.7e-21 75.0 0.2 4.6e-21 74.6 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Acetyltransf_1 PF00583.25 gi|20092750|ref|NP_618825.1| - 3.8e-11 43.3 0.0 5.1e-11 42.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20092750|ref|NP_618825.1| - 7.3e-10 39.1 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20092750|ref|NP_618825.1| - 8.1e-09 35.5 0.0 1.3e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20092750|ref|NP_618825.1| - 6.1e-05 22.9 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|20092750|ref|NP_618825.1| - 0.0056 16.8 0.1 0.01 16.0 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20092750|ref|NP_618825.1| - 0.006 17.3 0.0 0.0077 16.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|20092750|ref|NP_618825.1| - 0.0072 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20092750|ref|NP_618825.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DEAD PF00270.29 gi|20092752|ref|NP_618827.1| - 2.8e-49 167.2 0.1 1.3e-48 165.0 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|20092752|ref|NP_618827.1| - 1.2e-32 112.6 1.1 8.5e-31 106.6 0.0 3.3 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DbpA PF03880.15 gi|20092752|ref|NP_618827.1| - 4.4e-13 49.0 0.1 6.1e-12 45.4 0.0 3.0 2 1 0 2 2 2 1 DbpA RNA binding domain ResIII PF04851.15 gi|20092752|ref|NP_618827.1| - 5.5e-10 39.5 0.0 1.6e-09 38.0 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|20092752|ref|NP_618827.1| - 0.00025 20.3 0.1 0.00043 19.6 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase CMS1 PF14617.6 gi|20092752|ref|NP_618827.1| - 0.00031 20.2 0.1 0.0009 18.7 0.1 1.8 1 0 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.6 gi|20092752|ref|NP_618827.1| - 0.0057 16.4 0.1 0.021 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain HAUS5 PF14817.6 gi|20092752|ref|NP_618827.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 ABC_tran PF00005.27 gi|20092753|ref|NP_618828.1| - 1.3e-35 122.9 0.0 1.7e-35 122.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092753|ref|NP_618828.1| - 1.5e-07 31.6 0.3 0.002 18.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092753|ref|NP_618828.1| - 4.9e-06 26.1 0.1 0.00041 19.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|20092753|ref|NP_618828.1| - 9.3e-05 22.7 0.3 0.0013 19.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20092753|ref|NP_618828.1| - 0.00015 21.4 0.1 0.00042 20.0 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20092753|ref|NP_618828.1| - 0.00096 19.1 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|20092753|ref|NP_618828.1| - 0.0011 19.4 0.0 0.0018 18.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|20092753|ref|NP_618828.1| - 0.0095 15.7 0.0 0.77 9.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|20092753|ref|NP_618828.1| - 0.019 15.5 0.2 0.037 14.5 0.2 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|20092753|ref|NP_618828.1| - 0.02 15.0 0.1 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain G-alpha PF00503.20 gi|20092753|ref|NP_618828.1| - 0.069 12.3 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ATPase_2 PF01637.18 gi|20092753|ref|NP_618828.1| - 0.078 12.9 0.1 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|20092753|ref|NP_618828.1| - 0.078 13.1 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|20092753|ref|NP_618828.1| - 0.098 12.4 0.0 0.18 11.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|20092753|ref|NP_618828.1| - 0.11 12.2 0.0 0.68 9.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|20092753|ref|NP_618828.1| - 0.11 11.6 0.1 0.3 10.2 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|20092753|ref|NP_618828.1| - 0.12 12.6 0.3 0.58 10.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|20092753|ref|NP_618828.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20092753|ref|NP_618828.1| - 0.16 11.6 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|20092753|ref|NP_618828.1| - 0.17 10.9 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) NPCBM_assoc PF10633.9 gi|20092754|ref|NP_618829.1| - 5.4e-09 36.2 1.7 0.0055 16.9 0.0 4.5 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|20092754|ref|NP_618829.1| - 5.3e-08 33.1 8.8 0.0014 18.9 0.8 4.2 3 2 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|20092754|ref|NP_618829.1| - 1.3e-06 28.6 6.9 0.00016 21.9 0.1 4.1 2 1 1 4 4 4 2 CARDB Pilin PF00114.19 gi|20092754|ref|NP_618829.1| - 0.03 15.2 2.8 0.62 11.0 0.9 3.3 2 1 0 2 2 2 0 Pilin (bacterial filament) DUF824 PF05688.11 gi|20092754|ref|NP_618829.1| - 0.05 13.4 0.2 2.5 8.0 0.0 3.4 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) Big_8 PF17961.1 gi|20092754|ref|NP_618829.1| - 0.069 13.3 1.7 1.4 9.1 0.0 3.2 2 1 0 2 2 2 0 Bacterial Ig domain Agarase_CBM PF17992.1 gi|20092754|ref|NP_618829.1| - 0.074 12.6 0.0 0.65 9.5 0.0 2.4 2 1 0 2 2 2 0 Agarase CBM like domain DUF2393 PF09624.10 gi|20092754|ref|NP_618829.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) Pilin_N PF07790.11 gi|20092754|ref|NP_618829.1| - 0.84 10.6 0.1 0.84 10.6 0.1 3.0 4 0 0 4 4 4 0 Archaeal Type IV pilin, N-terminal MacB_PCD PF12704.7 gi|20092755|ref|NP_618830.1| - 1.3e-25 91.0 2.3 2.3e-25 90.1 2.3 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20092755|ref|NP_618830.1| - 8.9e-11 42.1 1.2 8.9e-11 42.1 1.2 3.1 3 0 0 3 3 3 2 FtsX-like permease family ABC_tran PF00005.27 gi|20092756|ref|NP_618831.1| - 1.2e-34 119.8 0.0 1.7e-34 119.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|20092756|ref|NP_618831.1| - 3e-06 26.9 0.0 0.058 12.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20092756|ref|NP_618831.1| - 5.7e-06 26.4 0.1 0.055 13.3 0.3 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20092756|ref|NP_618831.1| - 0.00089 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20092756|ref|NP_618831.1| - 0.0023 17.9 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092756|ref|NP_618831.1| - 0.0064 16.8 0.1 0.016 15.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|20092756|ref|NP_618831.1| - 0.02 15.4 0.1 0.036 14.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|20092756|ref|NP_618831.1| - 0.038 14.4 0.0 0.053 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|20092756|ref|NP_618831.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase NPCBM_assoc PF10633.9 gi|20092757|ref|NP_618832.1| - 2.1e-06 27.9 0.1 0.3 11.4 0.0 3.9 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|20092757|ref|NP_618832.1| - 1.2e-05 25.5 2.2 0.0042 17.3 0.0 3.2 3 1 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|20092757|ref|NP_618832.1| - 0.00012 22.3 2.3 0.033 14.5 1.0 3.6 3 1 0 3 3 3 1 Domain of unknown function DUF11 DUF4360 PF14273.6 gi|20092757|ref|NP_618832.1| - 0.031 14.2 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4360) Gram_pos_anchor PF00746.21 gi|20092757|ref|NP_618832.1| - 0.16 12.0 0.1 0.26 11.3 0.1 1.3 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF3872 PF12988.7 gi|20092757|ref|NP_618832.1| - 0.2 11.5 0.0 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3872) HATPase_c PF02518.26 gi|20092758|ref|NP_618833.1| - 1.5e-33 115.6 0.1 6.1e-33 113.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20092758|ref|NP_618833.1| - 1.4e-17 63.5 0.0 2.8e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|20092758|ref|NP_618833.1| - 0.0014 18.5 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|20092758|ref|NP_618833.1| - 0.0056 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEDS PF14417.6 gi|20092758|ref|NP_618833.1| - 0.24 11.2 0.0 0.48 10.3 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain MacB_PCD PF12704.7 gi|20092759|ref|NP_618834.1| - 1.8e-22 80.6 2.2 4.4e-22 79.4 2.2 1.7 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|20092759|ref|NP_618834.1| - 5.6e-09 36.4 7.9 5.6e-09 36.4 7.9 3.3 3 0 0 3 3 3 2 FtsX-like permease family LptF_LptG PF03739.14 gi|20092759|ref|NP_618834.1| - 6.5 5.5 11.5 3 6.6 5.9 2.4 2 1 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG Flavin_Reduct PF01613.18 gi|20092760|ref|NP_618835.1| - 2.4e-18 66.6 0.0 3.3e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain FMN_red PF03358.15 gi|20092761|ref|NP_618836.1| - 4.8e-19 68.6 0.0 7.8e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20092761|ref|NP_618836.1| - 4e-09 36.5 0.0 5.3e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold ABC_tran PF00005.27 gi|20092762|ref|NP_618837.1| - 2.3e-52 177.1 0.0 1.4e-25 90.4 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_29 PF13555.6 gi|20092762|ref|NP_618837.1| - 2.4e-08 33.6 0.7 0.0048 16.6 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20092762|ref|NP_618837.1| - 4.3e-08 33.2 0.1 0.006 16.5 0.0 2.6 2 1 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|20092762|ref|NP_618837.1| - 6.1e-08 32.8 4.2 0.0079 16.0 0.1 4.1 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20092762|ref|NP_618837.1| - 2.7e-07 31.3 1.1 0.029 14.9 0.2 2.7 2 1 0 2 2 2 2 AAA domain TniB PF05621.11 gi|20092762|ref|NP_618837.1| - 6.4e-07 29.0 0.7 0.00058 19.3 0.1 3.7 4 0 0 4 4 4 1 Bacterial TniB protein AAA_22 PF13401.6 gi|20092762|ref|NP_618837.1| - 1.3e-06 28.7 0.5 0.11 12.7 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|20092762|ref|NP_618837.1| - 4.4e-06 27.2 0.1 0.14 12.6 0.1 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|20092762|ref|NP_618837.1| - 5.5e-06 26.2 0.2 0.15 11.8 0.0 3.0 3 0 0 3 3 3 2 AAA domain NB-ARC PF00931.22 gi|20092762|ref|NP_618837.1| - 4.2e-05 22.8 0.3 0.27 10.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PRK PF00485.18 gi|20092762|ref|NP_618837.1| - 8.2e-05 22.4 0.5 0.37 10.5 0.0 2.5 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.19 gi|20092762|ref|NP_618837.1| - 9.6e-05 21.9 0.0 2.1 7.7 0.0 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20092762|ref|NP_618837.1| - 9.6e-05 22.2 0.6 0.0069 16.1 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|20092762|ref|NP_618837.1| - 0.00022 21.2 0.0 0.29 11.1 0.0 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain SbcCD_C PF13558.6 gi|20092762|ref|NP_618837.1| - 0.00084 19.5 0.2 0.44 10.8 0.0 3.6 3 2 0 3 3 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|20092762|ref|NP_618837.1| - 0.0011 19.5 0.4 3.5 8.2 0.2 3.2 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|20092762|ref|NP_618837.1| - 0.0023 17.7 0.3 0.98 9.1 0.0 3.1 4 0 0 4 4 2 1 AAA domain AAA_33 PF13671.6 gi|20092762|ref|NP_618837.1| - 0.0031 17.7 0.3 0.85 9.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|20092762|ref|NP_618837.1| - 0.0032 17.4 0.1 1.4 8.8 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase ATPase_2 PF01637.18 gi|20092762|ref|NP_618837.1| - 0.0038 17.2 0.5 2.9 7.7 0.0 3.1 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|20092762|ref|NP_618837.1| - 0.0059 17.0 0.4 3.9 7.9 0.0 3.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|20092762|ref|NP_618837.1| - 0.0062 16.1 0.1 12 5.4 0.0 3.6 4 0 0 4 4 4 0 AAA domain MMR_HSR1 PF01926.23 gi|20092762|ref|NP_618837.1| - 0.0089 16.1 1.2 1 9.5 0.1 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase MobB PF03205.14 gi|20092762|ref|NP_618837.1| - 0.013 15.4 0.7 5.4 6.9 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|20092762|ref|NP_618837.1| - 0.015 15.2 0.5 1.8 8.5 0.2 2.6 2 0 0 2 2 2 0 NTPase MeaB PF03308.16 gi|20092762|ref|NP_618837.1| - 0.016 14.2 0.2 0.069 12.1 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|20092762|ref|NP_618837.1| - 0.019 14.7 0.0 3.6 7.3 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein G-alpha PF00503.20 gi|20092762|ref|NP_618837.1| - 0.022 13.9 0.0 2.3 7.3 0.0 2.5 3 0 0 3 3 2 0 G-protein alpha subunit Mg_chelatase PF01078.21 gi|20092762|ref|NP_618837.1| - 0.022 14.1 0.1 0.87 8.9 0.0 2.8 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|20092762|ref|NP_618837.1| - 0.025 13.6 0.0 1.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein TsaE PF02367.17 gi|20092762|ref|NP_618837.1| - 0.033 14.2 0.0 2.1 8.4 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|20092762|ref|NP_618837.1| - 0.035 14.1 0.3 26 4.9 0.0 3.4 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|20092762|ref|NP_618837.1| - 0.037 14.0 2.7 2.6 7.9 0.2 3.2 3 0 0 3 3 3 0 NACHT domain AAA_28 PF13521.6 gi|20092762|ref|NP_618837.1| - 0.041 14.1 2.5 2.9 8.1 0.1 3.1 3 1 0 3 3 3 0 AAA domain cobW PF02492.19 gi|20092762|ref|NP_618837.1| - 0.054 13.1 1.0 3.1 7.4 0.1 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|20092762|ref|NP_618837.1| - 0.057 13.8 0.3 7.2 7.1 0.0 2.6 2 0 0 2 2 2 0 RNA helicase PIF1 PF05970.14 gi|20092762|ref|NP_618837.1| - 0.061 12.5 0.0 4.4 6.4 0.0 3.0 3 0 0 3 3 3 0 PIF1-like helicase AAA_17 PF13207.6 gi|20092762|ref|NP_618837.1| - 0.065 13.7 0.6 5 7.6 0.3 3.0 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|20092762|ref|NP_618837.1| - 0.075 12.5 0.0 18 4.7 0.0 2.8 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|20092762|ref|NP_618837.1| - 0.12 11.9 0.1 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|20092762|ref|NP_618837.1| - 0.12 12.3 2.2 4.9 7.2 0.1 3.2 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|20092762|ref|NP_618837.1| - 0.13 12.0 0.1 4.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|20092762|ref|NP_618837.1| - 0.16 12.2 0.3 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF87 PF01935.17 gi|20092762|ref|NP_618837.1| - 1.2 9.2 6.2 5.8 6.9 0.1 3.1 3 1 0 3 3 3 0 Helicase HerA, central domain MTH865 PF07747.11 gi|20092763|ref|NP_618838.1| - 9.5e-29 99.0 0.1 1.1e-28 98.8 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family PcrB PF01884.17 gi|20092764|ref|NP_618839.1| - 3.9e-65 219.5 0.9 4.4e-65 219.3 0.9 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|20092764|ref|NP_618839.1| - 6.6e-05 22.5 0.7 0.00011 21.8 0.3 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|20092764|ref|NP_618839.1| - 0.055 12.8 0.2 0.11 11.9 0.2 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family CsgG PF03783.14 gi|20092764|ref|NP_618839.1| - 0.073 12.3 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG Ribosomal_L40e PF01020.17 gi|20092765|ref|NP_618840.1| - 1.8e-06 27.7 5.7 2.3e-06 27.4 5.7 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DNA_RNApol_7kD PF03604.13 gi|20092765|ref|NP_618840.1| - 0.00068 19.3 4.5 0.0011 18.6 4.5 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|20092765|ref|NP_618840.1| - 0.0014 18.3 1.5 0.002 17.8 1.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|20092765|ref|NP_618840.1| - 0.0042 17.1 0.9 0.0052 16.8 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|20092765|ref|NP_618840.1| - 0.011 15.1 2.0 0.013 14.9 2.0 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Lyase_1 PF00206.20 gi|20092766|ref|NP_618841.1| - 2.7e-52 178.1 0.6 3.6e-52 177.7 0.6 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|20092766|ref|NP_618841.1| - 1.8e-19 70.1 1.3 5.9e-19 68.4 0.1 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus RACo_C_ter PF14574.6 gi|20092767|ref|NP_618842.1| - 4.5e-72 242.2 1.3 8.5e-72 241.3 1.3 1.5 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|20092767|ref|NP_618842.1| - 4.1e-09 36.3 0.0 1.9e-08 34.2 0.0 2.1 2 0 0 2 2 2 1 RACo middle region Fer4_9 PF13187.6 gi|20092767|ref|NP_618842.1| - 9.1e-06 25.7 11.5 1.6e-05 25.0 11.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092767|ref|NP_618842.1| - 2.9e-05 24.5 11.6 5.9e-05 23.6 11.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092767|ref|NP_618842.1| - 0.00031 20.8 12.5 0.00067 19.7 12.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092767|ref|NP_618842.1| - 0.002 19.1 4.2 0.002 19.1 4.2 2.9 2 1 1 3 3 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|20092767|ref|NP_618842.1| - 0.004 16.9 4.9 0.004 16.9 4.9 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_11 PF13247.6 gi|20092767|ref|NP_618842.1| - 0.0045 17.1 5.5 0.0085 16.2 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092767|ref|NP_618842.1| - 0.0074 16.4 14.8 0.03 14.5 14.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092767|ref|NP_618842.1| - 0.0084 16.2 12.2 0.37 11.0 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092767|ref|NP_618842.1| - 0.02 15.0 14.1 0.63 10.2 5.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20092767|ref|NP_618842.1| - 0.037 14.5 3.7 0.21 12.0 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20092767|ref|NP_618842.1| - 0.08 13.5 11.1 0.82 10.3 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20092767|ref|NP_618842.1| - 1.5 9.9 16.3 4.8 8.3 3.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20092767|ref|NP_618842.1| - 7.1 6.9 12.7 40 4.5 12.7 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092767|ref|NP_618842.1| - 7.3 7.2 13.1 1.2 9.7 2.1 2.5 1 1 1 2 2 1 0 4Fe-4S dicluster domain ATPase PF06745.13 gi|20092768|ref|NP_618843.1| - 1.4e-46 158.7 0.0 1.5e-46 158.6 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|20092768|ref|NP_618843.1| - 1.6e-05 24.6 0.0 4.7e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain GvpD PF07088.11 gi|20092768|ref|NP_618843.1| - 5.7e-05 21.9 0.0 0.00032 19.4 0.0 1.9 2 0 0 2 2 2 1 GvpD gas vesicle protein RecA PF00154.21 gi|20092768|ref|NP_618843.1| - 0.00014 21.4 0.0 0.00021 20.9 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein NTPase_1 PF03266.15 gi|20092768|ref|NP_618843.1| - 0.0003 20.7 0.4 0.0012 18.8 0.4 1.8 1 1 0 1 1 1 1 NTPase DnaB_C PF03796.15 gi|20092768|ref|NP_618843.1| - 0.00042 19.7 0.0 0.00052 19.4 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|20092768|ref|NP_618843.1| - 0.002 18.4 0.2 0.005 17.1 0.2 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|20092768|ref|NP_618843.1| - 0.0022 17.7 0.0 0.0066 16.2 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein PAXNEB PF05625.11 gi|20092768|ref|NP_618843.1| - 0.0025 17.0 0.0 0.0041 16.3 0.0 1.3 1 0 0 1 1 1 1 PAXNEB protein T2SSE PF00437.20 gi|20092768|ref|NP_618843.1| - 0.0033 16.5 0.1 0.0047 16.0 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|20092768|ref|NP_618843.1| - 0.0051 16.5 0.0 0.0078 15.9 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|20092768|ref|NP_618843.1| - 0.0065 16.9 0.0 0.0079 16.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain MORN_2 PF07661.13 gi|20092768|ref|NP_618843.1| - 0.0098 16.0 0.2 0.023 14.9 0.2 1.6 1 0 0 1 1 1 1 MORN repeat variant AAA_24 PF13479.6 gi|20092768|ref|NP_618843.1| - 0.01 15.6 0.9 0.067 12.9 0.9 2.0 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|20092768|ref|NP_618843.1| - 0.012 15.6 0.1 0.026 14.5 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad51 PF08423.11 gi|20092768|ref|NP_618843.1| - 0.016 14.5 0.2 0.026 13.8 0.1 1.5 2 0 0 2 2 2 0 Rad51 TIP49 PF06068.13 gi|20092768|ref|NP_618843.1| - 0.018 14.3 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain ResIII PF04851.15 gi|20092768|ref|NP_618843.1| - 0.018 15.0 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|20092768|ref|NP_618843.1| - 0.027 14.8 0.3 0.027 14.8 0.3 1.4 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|20092768|ref|NP_618843.1| - 0.029 13.6 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.22 gi|20092768|ref|NP_618843.1| - 0.03 13.9 0.2 0.07 12.8 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|20092768|ref|NP_618843.1| - 0.042 14.3 0.2 0.16 12.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|20092768|ref|NP_618843.1| - 0.045 13.8 0.1 0.23 11.5 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|20092768|ref|NP_618843.1| - 0.058 13.1 0.3 0.14 12.0 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TBSV_P22 PF03558.13 gi|20092768|ref|NP_618843.1| - 0.086 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 TBSV core protein P21/P22 DEAD PF00270.29 gi|20092768|ref|NP_618843.1| - 0.091 12.5 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|20092768|ref|NP_618843.1| - 0.092 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|20092768|ref|NP_618843.1| - 0.16 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain DAP3 PF10236.9 gi|20092768|ref|NP_618843.1| - 0.2 10.8 0.0 0.32 10.1 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|20092768|ref|NP_618843.1| - 0.27 11.0 0.1 0.37 10.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|20092769|ref|NP_618844.1| - 1e-41 142.8 0.0 2.1e-41 141.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSF PF00482.23 gi|20092770|ref|NP_618845.1| - 3.4e-35 120.7 4.3 4.6e-18 65.4 0.0 2.9 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F TRAP-gamma PF07074.12 gi|20092770|ref|NP_618845.1| - 0.048 13.2 0.2 0.048 13.2 0.2 2.5 3 0 0 3 3 3 0 Translocon-associated protein, gamma subunit (TRAP-gamma) CrgA PF06781.12 gi|20092770|ref|NP_618845.1| - 0.058 13.5 0.7 7.4 6.7 0.0 2.9 3 0 0 3 3 3 0 Cell division protein CrgA Orf78 PF06024.12 gi|20092770|ref|NP_618845.1| - 0.27 11.6 0.1 0.27 11.6 0.1 2.7 3 0 0 3 3 3 0 Orf78 (ac78) Ac76 PF05814.11 gi|20092770|ref|NP_618845.1| - 2.5 8.2 14.6 0.67 10.0 3.4 3.8 3 0 0 3 3 3 0 Orf76 (Ac76) DUF2207 PF09972.9 gi|20092770|ref|NP_618845.1| - 8.9 4.9 13.2 2.3 6.9 0.6 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2207) Acetyltransf_1 PF00583.25 gi|20092772|ref|NP_618847.1| - 1.6e-06 28.3 0.0 5.6e-06 26.6 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20092772|ref|NP_618847.1| - 6.9e-06 26.0 0.0 1.2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20092772|ref|NP_618847.1| - 0.00043 20.4 0.0 0.0064 16.6 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20092772|ref|NP_618847.1| - 0.00073 19.7 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20092772|ref|NP_618847.1| - 0.035 14.8 0.0 0.065 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20092772|ref|NP_618847.1| - 0.063 13.7 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain LAM_C PF12544.8 gi|20092773|ref|NP_618848.1| - 2.7e-35 121.3 0.0 4.1e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|20092773|ref|NP_618848.1| - 1.9e-10 41.3 0.3 6.9e-09 36.3 0.1 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|20092773|ref|NP_618848.1| - 0.00012 22.2 0.1 0.064 13.4 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|20092773|ref|NP_618848.1| - 0.0012 19.1 0.1 0.0051 17.1 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain AChE_tetra PF08674.10 gi|20092774|ref|NP_618849.1| - 0.14 11.9 1.3 0.22 11.3 1.3 1.3 1 0 0 1 1 1 0 Acetylcholinesterase tetramerisation domain Na_H_Exchanger PF00999.21 gi|20092775|ref|NP_618850.1| - 1.2e-58 198.8 58.1 1.2e-58 198.8 58.1 1.6 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|20092775|ref|NP_618850.1| - 5.9e-24 84.6 0.5 1.7e-23 83.1 0.3 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|20092775|ref|NP_618850.1| - 1.3e-15 56.9 0.1 3.8e-15 55.5 0.1 1.9 1 0 0 1 1 1 1 TrkA-C domain AlaDh_PNT_C PF01262.21 gi|20092775|ref|NP_618850.1| - 0.13 11.6 0.1 0.46 9.8 0.3 1.7 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2178 PF09946.9 gi|20092777|ref|NP_618852.1| - 1.9e-32 111.6 3.8 2.2e-32 111.4 3.8 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) BPD_transp_1 PF00528.22 gi|20092777|ref|NP_618852.1| - 0.024 14.4 3.1 2 8.1 0.3 2.2 2 0 0 2 2 2 0 Binding-protein-dependent transport system inner membrane component DUF3796 PF12676.7 gi|20092777|ref|NP_618852.1| - 0.028 14.9 8.2 0.06 13.8 8.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3796) TMEM40 PF15817.5 gi|20092777|ref|NP_618852.1| - 0.042 13.6 0.5 0.042 13.6 0.5 1.5 2 0 0 2 2 2 0 Transmembrane protein 40 family PRA1 PF03208.19 gi|20092777|ref|NP_618852.1| - 0.054 13.1 3.9 0.098 12.3 3.9 1.7 1 1 0 1 1 1 0 PRA1 family protein Phenol_hyd_sub PF06099.11 gi|20092777|ref|NP_618852.1| - 0.07 13.1 0.4 1.2 9.2 0.1 2.2 2 0 0 2 2 2 0 Phenol hydroxylase subunit Pex24p PF06398.11 gi|20092777|ref|NP_618852.1| - 0.2 10.6 0.6 0.26 10.2 0.6 1.2 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin MIG-14_Wnt-bd PF06664.12 gi|20092777|ref|NP_618852.1| - 2.8 7.1 11.3 4.6 6.4 11.3 1.3 1 1 0 1 1 1 0 Wnt-binding factor required for Wnt secretion Presenilin PF01080.17 gi|20092777|ref|NP_618852.1| - 3.6 6.2 7.4 4.3 6.0 7.4 1.1 1 0 0 1 1 1 0 Presenilin DUF4271 PF14093.6 gi|20092777|ref|NP_618852.1| - 4.7 7.1 15.3 1.4e+02 2.2 15.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) HTH_3 PF01381.22 gi|20092778|ref|NP_618853.1| - 9.2e-15 54.5 0.0 1e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|20092778|ref|NP_618853.1| - 2.6e-08 33.8 0.1 2.8e-08 33.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|20092778|ref|NP_618853.1| - 6.1e-08 32.9 0.0 7.3e-08 32.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|20092778|ref|NP_618853.1| - 4.2e-05 23.9 0.0 4.6e-05 23.8 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|20092778|ref|NP_618853.1| - 0.00028 20.3 0.0 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|20092778|ref|NP_618853.1| - 0.0028 17.6 0.0 0.0042 17.0 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|20092778|ref|NP_618853.1| - 0.01 15.6 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|20092778|ref|NP_618853.1| - 0.013 15.0 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|20092778|ref|NP_618853.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_25 PF13413.6 gi|20092778|ref|NP_618853.1| - 0.021 14.7 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.11 gi|20092778|ref|NP_618853.1| - 0.14 12.6 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) Sigma70_r4_2 PF08281.12 gi|20092778|ref|NP_618853.1| - 0.16 11.7 0.0 0.62 9.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Arginase PF00491.21 gi|20092780|ref|NP_618855.1| - 1e-77 261.4 0.0 1.2e-77 261.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.20 gi|20092781|ref|NP_618856.1| - 2.2e-06 27.7 0.4 2.2e-06 27.7 0.4 1.6 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|20092781|ref|NP_618856.1| - 7.7e-05 22.7 0.1 0.00016 21.7 0.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DDE_Tnp_ISL3 PF01610.17 gi|20092782|ref|NP_618857.1| - 5.2e-78 262.1 3.2 5.2e-78 262.1 3.2 1.5 2 0 0 2 2 2 1 Transposase zf-ISL3 PF14690.6 gi|20092782|ref|NP_618857.1| - 3e-10 40.6 5.6 1.6e-09 38.3 6.2 1.9 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.6 gi|20092782|ref|NP_618857.1| - 4.5e-10 38.8 0.1 4.6e-09 35.5 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.9 gi|20092782|ref|NP_618857.1| - 0.0059 17.0 0.0 0.042 14.3 0.0 2.2 1 1 0 2 2 2 1 MULE transposase domain Lar_restr_allev PF14354.6 gi|20092782|ref|NP_618857.1| - 0.024 15.0 1.8 0.052 13.9 1.2 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF1610 PF07754.11 gi|20092782|ref|NP_618857.1| - 0.045 13.7 0.5 0.092 12.7 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) AFOR_C PF01314.18 gi|20092783|ref|NP_618858.1| - 1.5e-84 284.3 0.0 6.1e-84 282.2 0.0 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|20092783|ref|NP_618858.1| - 9.8e-65 218.1 0.4 1.3e-64 217.7 0.4 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NUDIX PF00293.28 gi|20092784|ref|NP_618859.1| - 9.8e-20 70.9 0.0 1.2e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Peptidase_M10 PF00413.24 gi|20092785|ref|NP_618860.1| - 1.3e-15 57.6 0.0 3.4e-15 56.2 0.0 1.6 1 1 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|20092785|ref|NP_618860.1| - 0.00052 19.1 0.1 0.00082 18.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase M66 Astacin PF01400.24 gi|20092785|ref|NP_618860.1| - 0.0017 18.0 0.3 0.006 16.2 0.1 1.8 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Reprolysin_3 PF13582.6 gi|20092785|ref|NP_618860.1| - 0.0038 17.8 0.0 0.0049 17.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|20092785|ref|NP_618860.1| - 0.01 14.5 0.1 0.014 14.0 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M54 PF07998.11 gi|20092785|ref|NP_618860.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M54 DUF4953 PF16313.5 gi|20092785|ref|NP_618860.1| - 0.012 14.8 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Met-zincin Peptidase_M57 PF12388.8 gi|20092785|ref|NP_618860.1| - 0.021 14.4 0.1 0.028 14.0 0.1 1.3 1 1 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_4 PF13583.6 gi|20092785|ref|NP_618860.1| - 0.054 13.1 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|20092785|ref|NP_618860.1| - 0.081 13.1 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 ATP1G1_PLM_MAT8 PF02038.16 gi|20092785|ref|NP_618860.1| - 0.087 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family FixQ PF05545.11 gi|20092785|ref|NP_618860.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ CMD PF02627.20 gi|20092786|ref|NP_618861.1| - 2.6e-13 49.8 0.0 3.9e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.12 gi|20092787|ref|NP_618862.1| - 1.4e-124 414.6 0.2 1.6e-124 414.4 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|20092788|ref|NP_618863.1| - 1.2e-66 223.6 0.6 1.4e-66 223.4 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.20 gi|20092789|ref|NP_618864.1| - 1.6e-56 191.8 4.9 2.2e-56 191.3 4.9 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.16 gi|20092789|ref|NP_618864.1| - 0.0003 20.6 0.1 0.00065 19.5 0.1 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain MutL PF13941.6 gi|20092789|ref|NP_618864.1| - 0.0054 15.4 1.6 0.078 11.6 0.2 2.4 2 0 0 2 2 2 1 MutL protein FtsA PF14450.6 gi|20092789|ref|NP_618864.1| - 0.0068 16.8 0.5 0.082 13.3 0.5 2.4 1 1 0 1 1 1 1 Cell division protein FtsA DUF4934 PF16288.5 gi|20092789|ref|NP_618864.1| - 0.02 14.8 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) Hydant_A_N PF05378.13 gi|20092789|ref|NP_618864.1| - 0.029 14.1 0.3 0.069 12.8 0.3 1.7 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region DUF2112 PF09885.9 gi|20092790|ref|NP_618865.1| - 1e-64 216.9 0.0 1.2e-64 216.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|20092791|ref|NP_618866.1| - 1.5e-42 143.5 0.0 2.1e-42 143.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Cut12 PF11500.8 gi|20092792|ref|NP_618867.1| - 0.0017 18.3 0.0 0.0031 17.5 0.0 1.3 1 0 0 1 1 1 1 Spindle pole body formation-associated protein Fer2_4 PF13510.6 gi|20092792|ref|NP_618867.1| - 0.045 13.8 0.0 0.089 12.9 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Pro_isomerase PF00160.21 gi|20092792|ref|NP_618867.1| - 0.057 13.7 0.0 3.8 7.8 0.0 3.0 2 1 1 3 3 3 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.27 gi|20092793|ref|NP_618868.1| - 1.8e-49 167.8 0.4 3.8e-24 85.8 0.0 2.8 3 1 0 3 3 3 2 ABC transporter SMC_N PF02463.19 gi|20092793|ref|NP_618868.1| - 1.8e-05 24.3 0.8 0.22 10.9 0.0 3.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20092793|ref|NP_618868.1| - 0.00013 21.9 0.4 0.63 9.9 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|20092793|ref|NP_618868.1| - 0.00019 21.3 2.3 0.43 10.3 0.0 3.7 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20092793|ref|NP_618868.1| - 0.0012 19.2 0.0 0.043 14.2 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|20092793|ref|NP_618868.1| - 0.0015 18.2 0.5 0.95 9.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|20092793|ref|NP_618868.1| - 0.0017 18.1 0.1 1.4 8.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|20092793|ref|NP_618868.1| - 0.0025 18.3 2.5 2 9.0 0.1 3.1 3 0 0 3 3 3 2 AAA domain PRK PF00485.18 gi|20092793|ref|NP_618868.1| - 0.0057 16.4 0.1 3.4 7.4 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 gi|20092793|ref|NP_618868.1| - 0.0083 16.0 0.4 2.7 7.9 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|20092793|ref|NP_618868.1| - 0.021 15.0 1.2 1.7 8.8 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|20092793|ref|NP_618868.1| - 0.027 15.0 1.9 2.2 8.8 0.1 2.4 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|20092793|ref|NP_618868.1| - 0.033 13.6 0.2 0.74 9.2 0.1 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|20092793|ref|NP_618868.1| - 0.033 13.4 1.9 1.4 8.1 0.1 2.6 2 0 0 2 2 2 0 NB-ARC domain AAA_22 PF13401.6 gi|20092793|ref|NP_618868.1| - 0.04 14.2 0.5 13 6.1 0.1 2.7 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|20092793|ref|NP_618868.1| - 0.061 13.4 4.2 1.2 9.2 0.2 2.8 3 0 0 3 3 2 0 Helicase HerA, central domain SbcCD_C PF13558.6 gi|20092793|ref|NP_618868.1| - 0.075 13.3 0.0 27 5.1 0.0 3.1 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF4796 PF16044.5 gi|20092793|ref|NP_618868.1| - 0.099 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4796) ATPase PF06745.13 gi|20092793|ref|NP_618868.1| - 0.11 11.9 2.0 0.65 9.3 0.1 2.7 3 0 0 3 3 3 0 KaiC IstB_IS21 PF01695.17 gi|20092793|ref|NP_618868.1| - 0.12 12.2 0.5 41 3.9 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein ADK_lid PF05191.14 gi|20092793|ref|NP_618868.1| - 0.16 12.0 0.3 0.36 10.9 0.3 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|20092793|ref|NP_618868.1| - 0.27 11.4 1.2 0.54 10.4 1.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_24 PF13479.6 gi|20092793|ref|NP_618868.1| - 0.95 9.1 3.3 23 4.7 0.1 2.5 2 0 0 2 2 2 0 AAA domain zinc_ribbon_2 PF13240.6 gi|20092793|ref|NP_618868.1| - 1.1 9.0 2.9 7.3 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain NACHT PF05729.12 gi|20092793|ref|NP_618868.1| - 8.2 6.3 5.9 1.1 9.1 0.4 2.2 2 0 0 2 2 2 0 NACHT domain Hydrolase PF00702.26 gi|20092794|ref|NP_618869.1| - 7.7e-17 62.3 0.0 2e-16 60.9 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|20092794|ref|NP_618869.1| - 2.7e-05 24.1 0.1 7.9e-05 22.6 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|20092794|ref|NP_618869.1| - 5.7e-05 23.0 0.1 0.15 11.7 0.0 3.0 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|20092794|ref|NP_618869.1| - 0.013 15.6 0.0 0.04 14.0 0.1 1.9 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase SPP PF06550.11 gi|20092795|ref|NP_618870.1| - 5.7e-133 442.7 30.0 6.8e-133 442.5 30.0 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease DUF4919 PF16266.5 gi|20092797|ref|NP_618872.1| - 0.018 15.0 0.2 0.02 14.9 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) MEDS PF14417.6 gi|20092797|ref|NP_618872.1| - 0.022 14.6 0.0 0.024 14.5 0.0 1.1 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Peptidase_C11 PF03415.14 gi|20092798|ref|NP_618873.1| - 3.3e-144 480.8 0.0 3.9e-144 480.5 0.0 1.0 1 0 0 1 1 1 1 Clostripain family XPG_I PF00867.18 gi|20092799|ref|NP_618874.1| - 1.1e-28 99.4 0.2 5.5e-28 97.2 0.0 2.2 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|20092799|ref|NP_618874.1| - 2.7e-20 72.7 0.0 7e-20 71.4 0.0 1.7 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|20092799|ref|NP_618874.1| - 3.1e-05 24.5 0.4 7.2e-05 23.3 0.1 1.9 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|20092799|ref|NP_618874.1| - 0.067 13.8 0.0 0.39 11.4 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain Cation_efflux PF01545.21 gi|20092800|ref|NP_618875.1| - 1.6e-40 139.0 10.6 1.9e-40 138.7 10.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|20092800|ref|NP_618875.1| - 1.1e-16 60.6 2.2 2.2e-16 59.7 2.2 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter YjcB PF15940.5 gi|20092800|ref|NP_618875.1| - 0.098 12.9 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function DUF2104 PF09877.9 gi|20092800|ref|NP_618875.1| - 0.35 11.2 2.5 0.49 10.7 0.2 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2104) GHMP_kinases_N PF00288.26 gi|20092801|ref|NP_618876.1| - 6.3e-08 32.7 0.3 1.1e-07 31.9 0.3 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|20092801|ref|NP_618876.1| - 0.0012 19.2 0.0 0.0026 18.1 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal iPGM_N PF06415.13 gi|20092802|ref|NP_618877.1| - 2.7e-84 282.0 0.0 3.7e-84 281.5 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|20092802|ref|NP_618877.1| - 1e-81 274.0 0.0 1.2e-81 273.8 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|20092802|ref|NP_618877.1| - 7.3e-06 25.8 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|20092802|ref|NP_618877.1| - 7e-05 22.4 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.12 gi|20092802|ref|NP_618877.1| - 0.006 16.7 0.1 0.013 15.6 0.1 1.5 1 0 0 1 1 1 1 PglZ domain Alk_phosphatase PF00245.20 gi|20092802|ref|NP_618877.1| - 0.036 13.0 0.2 0.061 12.3 0.2 1.3 1 0 0 1 1 1 0 Alkaline phosphatase Gpr1_Fun34_YaaH PF01184.19 gi|20092803|ref|NP_618878.1| - 2.3e-41 141.7 15.9 2.9e-41 141.4 15.9 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF2079 PF09852.9 gi|20092803|ref|NP_618878.1| - 0.36 9.6 9.4 1.3 7.8 2.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2079) RrnaAD PF00398.20 gi|20092804|ref|NP_618879.1| - 0.00038 19.6 0.0 0.00048 19.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|20092804|ref|NP_618879.1| - 0.0013 19.4 0.0 0.0024 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092804|ref|NP_618879.1| - 0.0017 18.2 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|20092804|ref|NP_618879.1| - 0.0083 15.5 0.0 0.011 15.0 0.0 1.3 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_11 PF08241.12 gi|20092804|ref|NP_618879.1| - 0.0085 16.7 0.0 0.016 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|20092804|ref|NP_618879.1| - 0.021 14.8 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|20092804|ref|NP_618879.1| - 0.094 11.8 0.0 0.095 11.8 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase UbiA PF01040.18 gi|20092805|ref|NP_618880.1| - 3.2e-15 56.1 9.8 8.1e-15 54.8 9.9 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF1724 PF08350.10 gi|20092806|ref|NP_618881.1| - 1.1e-22 79.9 0.5 2.3e-22 78.9 0.5 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20092806|ref|NP_618881.1| - 0.00026 20.8 0.0 0.00045 20.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20092806|ref|NP_618881.1| - 0.04 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|20092806|ref|NP_618881.1| - 0.077 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|20092806|ref|NP_618881.1| - 0.081 13.0 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_27 PF13463.6 gi|20092806|ref|NP_618881.1| - 0.13 12.7 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|20092806|ref|NP_618881.1| - 0.14 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|20092806|ref|NP_618881.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 MarR family AICARFT_IMPCHas PF01808.18 gi|20092807|ref|NP_618882.1| - 9.9e-100 333.8 0.0 1.3e-99 333.4 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|20092807|ref|NP_618882.1| - 2.1e-27 95.2 0.1 4e-27 94.2 0.1 1.5 1 0 0 1 1 1 1 MGS-like domain MgsA_C PF12002.8 gi|20092807|ref|NP_618882.1| - 0.004 17.1 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal Pyr_redox_2 PF07992.14 gi|20092808|ref|NP_618883.1| - 2.2e-54 184.7 0.0 2.8e-54 184.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|20092808|ref|NP_618883.1| - 5e-18 65.4 0.0 1.2e-17 64.2 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|20092808|ref|NP_618883.1| - 2e-15 57.1 0.4 2.9e-13 50.2 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|20092808|ref|NP_618883.1| - 3e-13 49.7 0.3 2.9e-11 43.2 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|20092808|ref|NP_618883.1| - 0.00035 19.9 0.1 0.069 12.4 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|20092808|ref|NP_618883.1| - 0.0007 20.1 0.2 1.2 9.8 0.0 2.7 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|20092808|ref|NP_618883.1| - 0.0024 17.5 0.1 0.0066 16.1 0.1 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase GDI PF00996.18 gi|20092808|ref|NP_618883.1| - 0.0053 15.3 0.0 0.0077 14.8 0.0 1.2 1 0 0 1 1 1 1 GDP dissociation inhibitor FAD_oxidored PF12831.7 gi|20092808|ref|NP_618883.1| - 0.0074 15.7 0.5 8.6 5.6 0.1 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|20092808|ref|NP_618883.1| - 0.0093 15.9 0.1 0.87 9.4 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|20092808|ref|NP_618883.1| - 0.025 13.9 0.0 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|20092808|ref|NP_618883.1| - 0.047 12.4 0.2 1.9 7.1 0.0 2.8 2 1 1 3 3 3 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|20092808|ref|NP_618883.1| - 0.067 12.3 1.2 0.17 10.9 0.1 2.1 2 1 1 3 3 3 0 FAD binding domain NAD_binding_8 PF13450.6 gi|20092808|ref|NP_618883.1| - 0.067 13.4 1.7 2.2 8.5 0.3 2.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|20092808|ref|NP_618883.1| - 0.11 11.7 0.0 0.4 9.9 0.0 1.9 2 0 0 2 2 2 0 Thi4 family FAD_binding_3 PF01494.19 gi|20092808|ref|NP_618883.1| - 0.14 11.4 1.1 11 5.1 0.1 2.7 2 1 1 3 3 3 0 FAD binding domain TrkA_N PF02254.18 gi|20092808|ref|NP_618883.1| - 0.16 12.2 0.7 2.4 8.4 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain HhH-GPD PF00730.25 gi|20092809|ref|NP_618884.1| - 1e-22 80.6 0.1 1.4e-22 80.2 0.1 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|20092809|ref|NP_618884.1| - 1.2e-08 34.3 0.0 2.9e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|20092809|ref|NP_618884.1| - 0.0027 18.0 4.7 0.0027 18.0 4.7 2.0 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III DUF3349 PF11829.8 gi|20092809|ref|NP_618884.1| - 0.019 15.7 0.1 0.1 13.3 0.0 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3349) HHH_5 PF14520.6 gi|20092809|ref|NP_618884.1| - 0.02 15.5 0.1 0.64 10.7 0.0 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|20092809|ref|NP_618884.1| - 0.054 14.1 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold bacHORMA_1 PF18138.1 gi|20092809|ref|NP_618884.1| - 0.056 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial HORMA domain family 1 Methyltransf_11 PF08241.12 gi|20092810|ref|NP_618885.1| - 3.8e-27 94.8 0.0 5.8e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092810|ref|NP_618885.1| - 1.7e-24 86.3 0.0 2.8e-24 85.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092810|ref|NP_618885.1| - 8.6e-23 80.8 0.0 1.1e-22 80.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092810|ref|NP_618885.1| - 8.3e-18 64.6 0.0 1.2e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20092810|ref|NP_618885.1| - 3.4e-13 49.8 0.0 4.8e-13 49.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092810|ref|NP_618885.1| - 4.2e-12 46.7 0.0 6.4e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20092810|ref|NP_618885.1| - 2e-07 30.7 0.0 4e-07 29.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|20092810|ref|NP_618885.1| - 5.6e-07 29.2 0.0 8.5e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.11 gi|20092810|ref|NP_618885.1| - 7.4e-06 25.8 0.0 3e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|20092810|ref|NP_618885.1| - 1.3e-05 25.3 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20092810|ref|NP_618885.1| - 1.4e-05 25.0 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|20092810|ref|NP_618885.1| - 0.00011 21.9 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|20092810|ref|NP_618885.1| - 0.00029 20.4 0.0 0.00043 19.9 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase NodS PF05401.11 gi|20092810|ref|NP_618885.1| - 0.00054 19.6 0.0 0.00078 19.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|20092810|ref|NP_618885.1| - 0.0031 17.5 0.0 0.0047 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20092810|ref|NP_618885.1| - 0.0045 16.3 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.13 gi|20092810|ref|NP_618885.1| - 0.0069 16.7 0.0 0.19 12.1 0.0 2.3 2 0 0 2 2 2 1 Predicted AdoMet-dependent methyltransferase RrnaAD PF00398.20 gi|20092810|ref|NP_618885.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Mur_ligase PF01225.25 gi|20092810|ref|NP_618885.1| - 0.012 16.0 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_9 PF08003.11 gi|20092810|ref|NP_618885.1| - 0.013 14.4 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|20092810|ref|NP_618885.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TehB PF03848.14 gi|20092810|ref|NP_618885.1| - 0.019 14.4 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_8 PF05148.15 gi|20092810|ref|NP_618885.1| - 0.03 14.2 0.0 0.053 13.4 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_16 PF10294.9 gi|20092810|ref|NP_618885.1| - 0.049 13.4 0.0 0.084 12.6 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase GidB PF02527.15 gi|20092810|ref|NP_618885.1| - 0.076 12.3 0.0 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G DREV PF05219.12 gi|20092810|ref|NP_618885.1| - 0.091 11.8 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase NAS PF03059.16 gi|20092811|ref|NP_618886.1| - 2.9e-20 72.7 0.0 3.7e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_31 PF13847.6 gi|20092811|ref|NP_618886.1| - 0.00021 21.1 0.0 0.00034 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092811|ref|NP_618886.1| - 0.00088 19.9 0.0 0.0019 18.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20092811|ref|NP_618886.1| - 0.0054 16.2 0.0 0.008 15.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|20092811|ref|NP_618886.1| - 0.0059 16.4 0.0 0.0086 15.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_3 PF01596.17 gi|20092811|ref|NP_618886.1| - 0.019 14.1 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_11 PF08241.12 gi|20092811|ref|NP_618886.1| - 0.03 15.0 0.0 0.057 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|20092811|ref|NP_618886.1| - 0.11 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family Methyltransf_10 PF05971.12 gi|20092811|ref|NP_618886.1| - 0.12 11.6 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase Methyltransf_12 PF08242.12 gi|20092811|ref|NP_618886.1| - 0.16 12.7 0.0 0.44 11.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain NAS PF03059.16 gi|20092812|ref|NP_618887.1| - 2.6e-31 109.0 0.0 3.4e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein CbiQ PF02361.16 gi|20092813|ref|NP_618888.1| - 2.1e-37 128.9 9.5 2.5e-37 128.6 9.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein MHYT PF03707.16 gi|20092813|ref|NP_618888.1| - 0.69 10.1 3.8 0.4 10.9 0.5 2.2 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat ABC_tran PF00005.27 gi|20092814|ref|NP_618889.1| - 6.5e-33 114.2 0.0 9.3e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092814|ref|NP_618889.1| - 5.8e-16 59.2 2.5 6.6e-12 45.8 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092814|ref|NP_618889.1| - 3.2e-08 33.3 0.0 1.1e-07 31.5 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|20092814|ref|NP_618889.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|20092814|ref|NP_618889.1| - 0.016 15.0 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|20092814|ref|NP_618889.1| - 0.037 14.1 0.3 0.1 12.7 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|20092814|ref|NP_618889.1| - 0.06 13.8 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|20092814|ref|NP_618889.1| - 0.076 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|20092814|ref|NP_618889.1| - 0.082 13.2 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|20092814|ref|NP_618889.1| - 0.17 12.1 0.1 2.4 8.5 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|20092815|ref|NP_618890.1| - 1.1e-30 106.9 0.0 1.9e-30 106.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092815|ref|NP_618890.1| - 7.7e-18 65.3 2.3 3.2e-11 43.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20092815|ref|NP_618890.1| - 2e-09 37.2 0.0 4.2e-09 36.2 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|20092815|ref|NP_618890.1| - 1.2e-07 31.8 0.0 0.0013 18.6 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|20092815|ref|NP_618890.1| - 0.0001 21.9 0.1 0.00021 21.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20092815|ref|NP_618890.1| - 0.0047 17.4 0.0 0.0065 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|20092815|ref|NP_618890.1| - 0.021 15.1 0.0 0.043 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|20092815|ref|NP_618890.1| - 0.033 12.9 0.0 1.7 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|20092815|ref|NP_618890.1| - 0.055 14.0 0.1 0.59 10.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|20092815|ref|NP_618890.1| - 0.098 12.9 0.0 1.8 8.9 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|20092815|ref|NP_618890.1| - 0.1 12.5 0.1 0.22 11.4 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase Peptidase_M76 PF09768.9 gi|20092815|ref|NP_618890.1| - 0.39 10.5 1.7 0.63 9.8 1.7 1.4 1 0 0 1 1 1 0 Peptidase M76 family CbiQ PF02361.16 gi|20092816|ref|NP_618891.1| - 1.5e-31 109.7 12.9 2e-31 109.3 12.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein BfiI_DBD PF18243.1 gi|20092816|ref|NP_618891.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Metal-independent restriction enzyme BfiI DNA binding domain CbiM PF01891.16 gi|20092817|ref|NP_618892.1| - 6e-57 192.8 16.1 6e-57 192.8 16.1 2.1 2 0 0 2 2 2 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 gi|20092817|ref|NP_618892.1| - 3.1e-05 23.8 0.0 3.1e-05 23.8 0.0 2.6 3 0 0 3 3 3 1 PDGLE domain Yip1 PF04893.17 gi|20092817|ref|NP_618892.1| - 0.0087 15.8 1.3 0.0087 15.8 1.3 3.5 1 1 1 2 2 2 1 Yip1 domain Zip PF02535.22 gi|20092818|ref|NP_618893.1| - 4.1 6.5 17.6 4.5 6.4 17.6 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter Otopetrin PF03189.13 gi|20092818|ref|NP_618893.1| - 4.8 5.9 9.3 5.4 5.7 9.3 1.0 1 0 0 1 1 1 0 Otopetrin MEDS PF14417.6 gi|20092820|ref|NP_618895.1| - 8.8e-44 149.2 0.1 5.3e-43 146.6 0.0 2.1 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_3 PF08447.12 gi|20092820|ref|NP_618895.1| - 1.1e-42 144.2 0.4 6.8e-22 77.6 0.1 2.7 2 0 0 2 2 2 2 PAS fold HisKA_2 PF07568.12 gi|20092820|ref|NP_618895.1| - 1.2e-31 108.6 1.2 6.7e-31 106.2 1.2 2.4 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 gi|20092820|ref|NP_618895.1| - 7.2e-10 39.1 0.3 0.0012 19.0 0.0 3.0 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|20092820|ref|NP_618895.1| - 2.6e-08 34.3 0.2 1.3e-07 32.2 0.2 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|20092820|ref|NP_618895.1| - 1e-07 31.9 0.0 0.0069 16.4 0.1 3.0 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|20092820|ref|NP_618895.1| - 0.00056 19.9 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|20092820|ref|NP_618895.1| - 0.0031 17.7 0.0 0.25 11.6 0.0 2.4 2 0 0 2 2 2 1 PAS fold HWE_HK PF07536.14 gi|20092820|ref|NP_618895.1| - 0.0053 17.4 1.1 0.022 15.5 0.1 2.5 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_3 PF13589.6 gi|20092820|ref|NP_618895.1| - 0.082 12.7 0.3 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|20092820|ref|NP_618895.1| - 0.091 12.5 0.7 0.72 9.6 0.1 2.5 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Phage_GP20 PF06810.11 gi|20092820|ref|NP_618895.1| - 1.4 8.7 10.3 0.51 10.1 1.0 3.2 3 0 0 3 3 3 0 Phage minor structural protein GP20 IMS PF00817.20 gi|20092821|ref|NP_618896.1| - 2.8e-39 134.5 0.0 4.6e-39 133.8 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|20092821|ref|NP_618896.1| - 4.1e-15 56.5 0.3 1.2e-14 55.0 0.4 1.7 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|20092821|ref|NP_618896.1| - 4e-10 39.4 0.0 1.6e-09 37.5 0.0 2.1 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|20092821|ref|NP_618896.1| - 0.002 17.9 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|20092821|ref|NP_618896.1| - 0.0048 17.1 0.0 0.0097 16.1 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus WcbI PF18588.1 gi|20092821|ref|NP_618896.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis enzyme WcbI Inhibitor_I42 PF09394.10 gi|20092822|ref|NP_618897.1| - 3e-15 56.4 0.0 3.3e-15 56.3 0.0 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DUF3042 PF11240.8 gi|20092823|ref|NP_618898.1| - 0.24 11.5 0.3 0.24 11.5 0.3 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) DUF2273 PF10031.9 gi|20092823|ref|NP_618898.1| - 2.7 8.1 15.4 2 8.5 3.9 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) DDE_Tnp_1_2 PF13586.6 gi|20092824|ref|NP_618899.1| - 7.1e-06 26.3 0.5 7.5e-06 26.2 0.5 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20092824|ref|NP_618899.1| - 0.0035 17.0 3.0 0.0036 17.0 3.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF1153 PF06627.11 gi|20092824|ref|NP_618899.1| - 0.077 13.1 0.1 0.08 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1153) UPF0228 PF05727.11 gi|20092825|ref|NP_618900.1| - 3.6e-51 172.1 7.0 3.6e-51 172.1 7.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0228) DUF4819 PF16090.5 gi|20092825|ref|NP_618900.1| - 0.039 14.0 0.3 1.9 8.7 0.3 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4819) CBM39 PF15886.5 gi|20092825|ref|NP_618900.1| - 0.049 13.5 0.2 0.94 9.4 0.1 2.3 2 1 0 2 2 2 0 Carbohydrate binding domain (family 32) DUF406 PF04175.12 gi|20092825|ref|NP_618900.1| - 0.1 13.1 0.7 0.15 12.6 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF406) Lactonase PF10282.9 gi|20092826|ref|NP_618901.1| - 1.5e-15 57.3 6.2 3.8e-05 23.1 0.3 3.3 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller NHL PF01436.21 gi|20092826|ref|NP_618901.1| - 7.8e-09 35.1 13.6 0.034 14.2 0.3 7.2 7 0 0 7 7 7 3 NHL repeat SGL PF08450.12 gi|20092826|ref|NP_618901.1| - 1.9e-07 31.0 8.0 0.063 12.8 0.1 4.1 1 1 2 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region PD40 PF07676.12 gi|20092826|ref|NP_618901.1| - 6.6e-06 25.9 0.1 2 8.4 0.0 4.6 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Cytochrom_D1 PF02239.16 gi|20092826|ref|NP_618901.1| - 4.5e-05 22.1 7.2 0.032 12.8 3.3 3.3 1 1 2 3 3 3 3 Cytochrome D1 heme domain SBP56 PF05694.11 gi|20092826|ref|NP_618901.1| - 0.0014 17.6 0.1 3.4 6.4 0.0 4.1 2 1 2 4 4 4 1 56kDa selenium binding protein (SBP56) DUF1513 PF07433.11 gi|20092826|ref|NP_618901.1| - 0.056 12.5 2.5 1.4 7.9 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1513) PQQ PF01011.21 gi|20092826|ref|NP_618901.1| - 7.5 6.7 10.5 2.4 8.2 0.1 4.2 4 0 0 4 4 4 0 PQQ enzyme repeat LVIVD PF08309.11 gi|20092827|ref|NP_618902.1| - 4.2e-256 826.1 116.9 5.1e-23 80.1 1.9 15.2 13 2 2 15 15 15 15 LVIVD repeat Beta_propel PF09826.9 gi|20092827|ref|NP_618902.1| - 7.8e-18 64.6 14.2 0.0093 14.9 0.1 10.4 1 1 7 9 9 9 7 Beta propeller domain PKD PF00801.20 gi|20092827|ref|NP_618902.1| - 2.4e-10 40.1 2.6 7.3e-10 38.6 2.6 1.8 1 0 0 1 1 1 1 PKD domain PQQ_3 PF13570.6 gi|20092827|ref|NP_618902.1| - 8e-06 26.2 63.3 1.3 9.6 0.7 13.8 15 0 0 15 15 15 5 PQQ-like domain SBP56 PF05694.11 gi|20092827|ref|NP_618902.1| - 1.8e-05 23.8 3.2 1.8 7.3 0.0 6.0 3 3 4 8 8 8 3 56kDa selenium binding protein (SBP56) DUF4263 PF14082.6 gi|20092827|ref|NP_618902.1| - 7.6e-05 23.0 0.0 0.43 10.8 0.0 5.7 2 2 0 3 3 3 1 Domain of unknown function (DUF4263) PQQ_2 PF13360.6 gi|20092827|ref|NP_618902.1| - 0.00026 20.7 6.6 2.5 7.6 0.1 6.0 3 3 2 5 5 5 1 PQQ-like domain CPSF_A PF03178.15 gi|20092827|ref|NP_618902.1| - 0.00044 19.7 0.3 3.3 6.9 0.0 4.3 4 2 2 6 6 6 2 CPSF A subunit region PGF-CTERM PF18204.1 gi|20092827|ref|NP_618902.1| - 0.045 13.7 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 PGF-CTERM motif PKD_3 PF16820.5 gi|20092827|ref|NP_618902.1| - 0.074 12.8 0.2 0.22 11.3 0.2 1.8 1 0 0 1 1 1 0 PKD-like domain Chitin_bind_4 PF00379.23 gi|20092827|ref|NP_618902.1| - 3.8 8.1 35.9 13 6.4 0.0 11.0 11 0 0 11 11 11 0 Insect cuticle protein Pox_VP8_L4R PF04498.12 gi|20092827|ref|NP_618902.1| - 4.1 6.9 6.7 76 2.8 0.2 4.6 5 2 1 6 6 6 0 Poxvirus nucleic acid binding protein VP8/L4R ABC_tran PF00005.27 gi|20092829|ref|NP_618904.1| - 2e-30 106.1 0.1 2.9e-30 105.6 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20092829|ref|NP_618904.1| - 4.3e-15 56.3 0.9 3.4e-10 40.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|20092829|ref|NP_618904.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|20092829|ref|NP_618904.1| - 0.043 13.5 0.0 0.28 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain STAS PF01740.21 gi|20092829|ref|NP_618904.1| - 0.053 13.1 0.1 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 STAS domain AAA_13 PF13166.6 gi|20092829|ref|NP_618904.1| - 0.14 10.7 0.1 0.31 9.6 0.2 1.4 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|20092829|ref|NP_618904.1| - 0.15 12.5 1.8 0.2 12.2 0.2 1.9 3 0 0 3 3 3 0 AAA domain ABC2_membrane_2 PF12679.7 gi|20092830|ref|NP_618905.1| - 3e-14 53.0 23.3 1.2e-13 51.0 23.3 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20092830|ref|NP_618905.1| - 0.00018 20.7 40.6 0.00018 20.7 40.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20092830|ref|NP_618905.1| - 0.043 13.4 40.2 0.11 12.0 36.9 2.6 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF5518 PF17647.1 gi|20092831|ref|NP_618906.1| - 0.27 11.4 23.7 0.37 10.9 23.7 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5518) DUF2070 PF09843.9 gi|20092831|ref|NP_618906.1| - 3.9 5.6 7.5 4.7 5.4 7.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Cas_Cas4 PF01930.17 gi|20092832|ref|NP_618907.1| - 1.1e-09 38.6 0.1 1.4e-07 31.7 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|20092832|ref|NP_618907.1| - 0.002 18.1 0.3 1.4 8.7 0.0 2.3 2 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily HTH_3 PF01381.22 gi|20092833|ref|NP_618908.1| - 5.5e-08 32.7 0.0 2e-07 31.0 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|20092833|ref|NP_618908.1| - 1.2e-06 28.4 0.0 4.1e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|20092833|ref|NP_618908.1| - 0.0019 18.5 0.0 0.0042 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|20092833|ref|NP_618908.1| - 0.098 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|20092833|ref|NP_618908.1| - 0.11 12.3 0.0 0.35 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain ACP_syn_III_C PF08541.10 gi|20092834|ref|NP_618909.1| - 6.4e-11 42.3 0.0 1.5e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|20092834|ref|NP_618909.1| - 2.9e-06 27.1 0.1 0.00024 20.9 0.0 2.4 2 1 1 3 3 3 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|20092834|ref|NP_618909.1| - 5.7e-05 22.6 0.5 0.00011 21.6 0.5 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|20092834|ref|NP_618909.1| - 0.00039 20.3 0.1 0.00052 19.9 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|20092834|ref|NP_618909.1| - 1.4 8.8 5.8 0.68 9.8 2.2 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|20092835|ref|NP_618910.1| - 8.8e-26 90.8 1.3 1.8e-25 89.8 1.3 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|20092835|ref|NP_618910.1| - 1.3e-12 47.5 1.7 6.9e-12 45.1 1.7 2.3 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|20092835|ref|NP_618910.1| - 2.9e-06 27.1 1.4 6.5e-06 25.9 1.4 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|20092835|ref|NP_618910.1| - 0.012 15.6 4.2 0.064 13.3 0.1 3.2 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|20092835|ref|NP_618910.1| - 0.023 14.5 1.5 0.37 10.7 1.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|20092836|ref|NP_618911.1| - 3e-20 72.0 0.0 4.3e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|20092836|ref|NP_618911.1| - 9.8e-11 41.3 0.9 1.4e-10 40.8 0.9 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|20092836|ref|NP_618911.1| - 0.027 14.5 0.5 0.04 13.9 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon CYTH PF01928.21 gi|20092837|ref|NP_618912.1| - 3.7e-44 150.8 1.4 4.2e-44 150.6 1.4 1.0 1 0 0 1 1 1 1 CYTH domain DUF3954 PF13128.6 gi|20092837|ref|NP_618912.1| - 0.053 13.3 0.5 1.2 9.0 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3954) PRE_C2HC PF07530.11 gi|20092837|ref|NP_618912.1| - 0.15 12.2 0.0 14 5.9 0.1 2.3 2 0 0 2 2 2 0 Associated with zinc fingers YoaP PF14268.6 gi|20092838|ref|NP_618913.1| - 5.2e-16 57.9 0.1 9.7e-16 57.0 0.1 1.5 1 0 0 1 1 1 1 YoaP-like Acetyltransf_CG PF14542.6 gi|20092838|ref|NP_618913.1| - 0.00031 20.8 0.0 0.0011 19.1 0.0 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|20092838|ref|NP_618913.1| - 0.00034 20.8 0.1 0.0017 18.6 0.1 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family DUF520 PF04461.13 gi|20092838|ref|NP_618913.1| - 0.14 12.2 0.1 0.26 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF520) tRNA-synt_1g PF09334.11 gi|20092839|ref|NP_618914.1| - 3.4e-154 513.3 0.0 4.2e-154 513.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|20092839|ref|NP_618914.1| - 2.5e-27 94.8 0.2 7.5e-27 93.3 0.2 1.9 1 0 0 1 1 1 1 Putative tRNA binding domain Anticodon_1 PF08264.13 gi|20092839|ref|NP_618914.1| - 2.4e-23 82.8 0.2 4e-23 82.1 0.2 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1 PF00133.22 gi|20092839|ref|NP_618914.1| - 8.5e-19 67.2 0.0 4.1e-10 38.6 0.0 3.9 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|20092839|ref|NP_618914.1| - 1.8e-16 60.4 0.0 1.5e-10 41.0 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|20092839|ref|NP_618914.1| - 0.0015 17.5 0.0 0.037 12.9 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-RING_7 PF02591.15 gi|20092839|ref|NP_618914.1| - 1.4 9.2 3.9 2.9 8.1 0.1 3.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain DZR PF12773.7 gi|20092839|ref|NP_618914.1| - 1.9 8.6 8.7 9.7 6.3 8.7 2.1 1 1 0 1 1 1 0 Double zinc ribbon Peptidase_S49 PF01343.18 gi|20092840|ref|NP_618915.1| - 1.3e-46 158.3 0.2 2e-46 157.7 0.2 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|20092840|ref|NP_618915.1| - 0.00097 19.1 0.5 0.0054 16.6 0.2 2.0 2 0 0 2 2 2 1 Clp protease Asparaginase_C PF17763.1 gi|20092840|ref|NP_618915.1| - 0.0012 19.1 0.1 0.0027 17.9 0.1 1.6 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain tRNA-synt_2b PF00587.25 gi|20092841|ref|NP_618916.1| - 2.5e-32 112.3 0.0 5e-32 111.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|20092841|ref|NP_618916.1| - 2.6e-27 95.2 4.0 4.7e-27 94.4 4.0 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain KLRAQ PF10205.9 gi|20092841|ref|NP_618916.1| - 0.008 16.4 1.2 0.015 15.5 1.2 1.4 1 0 0 1 1 1 1 Predicted coiled-coil domain-containing protein DUF948 PF06103.11 gi|20092841|ref|NP_618916.1| - 0.0084 16.3 0.7 0.016 15.4 0.7 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) MIP-T3_C PF17749.1 gi|20092841|ref|NP_618916.1| - 0.014 15.3 2.8 0.025 14.5 2.8 1.3 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 C-terminal region Cauli_AT PF03233.13 gi|20092841|ref|NP_618916.1| - 0.15 12.0 3.2 0.23 11.4 3.2 1.3 1 0 0 1 1 1 0 Aphid transmission protein Laminin_I PF06008.14 gi|20092841|ref|NP_618916.1| - 0.16 11.7 2.5 0.4 10.3 2.5 1.6 1 1 0 1 1 1 0 Laminin Domain I Glyco_hydro_15 PF00723.21 gi|20092843|ref|NP_618918.1| - 2.7e-10 39.6 0.1 1.4e-05 24.1 0.1 3.7 2 1 2 4 4 4 3 Glycosyl hydrolases family 15 Glucodextran_N PF09137.11 gi|20092843|ref|NP_618918.1| - 0.00047 19.8 0.0 0.00064 19.4 0.0 1.1 1 0 0 1 1 1 1 Glucodextranase, domain N V4R PF02830.18 gi|20092844|ref|NP_618919.1| - 9e-20 70.5 0.1 2e-19 69.4 0.1 1.6 1 0 0 1 1 1 1 V4R domain Glyco_hydro_57 PF03065.15 gi|20092845|ref|NP_618920.1| - 1.5e-74 251.2 0.1 2e-74 250.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|20092845|ref|NP_618920.1| - 0.00013 21.9 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|20092846|ref|NP_618921.1| - 1.8e-52 178.6 0.0 2.6e-52 178.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 MHYT PF03707.16 gi|20092847|ref|NP_618922.1| - 0.047 13.8 0.3 0.061 13.5 0.3 1.2 1 0 0 1 1 1 0 Bacterial signalling protein N terminal repeat AIRS PF00586.24 gi|20092848|ref|NP_618923.1| - 6.9e-49 164.5 1.1 2e-24 86.1 0.0 3.8 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|20092848|ref|NP_618923.1| - 1.7e-45 155.0 6.0 4.5e-31 108.1 0.3 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|20092848|ref|NP_618923.1| - 7.5e-08 32.8 0.0 2.4e-07 31.2 0.0 2.0 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain rve PF00665.26 gi|20092850|ref|NP_618925.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20092850|ref|NP_618925.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20092850|ref|NP_618925.1| - 7.5e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20092850|ref|NP_618925.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20092850|ref|NP_618925.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20092850|ref|NP_618925.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20092850|ref|NP_618925.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20092850|ref|NP_618925.1| - 0.11 12.2 0.5 0.5 10.1 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment HTH_45 PF14947.6 gi|20092851|ref|NP_618926.1| - 8e-06 25.8 0.6 9.3e-06 25.5 0.6 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|20092851|ref|NP_618926.1| - 2.3e-05 24.2 0.4 3.2e-05 23.7 0.4 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|20092851|ref|NP_618926.1| - 4.5e-05 23.3 0.2 5.7e-05 23.0 0.2 1.1 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|20092851|ref|NP_618926.1| - 0.0015 18.7 0.8 0.0021 18.2 0.4 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|20092851|ref|NP_618926.1| - 0.0017 18.1 0.5 0.0019 18.0 0.5 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit DUF4423 PF14394.6 gi|20092851|ref|NP_618926.1| - 0.0021 17.8 0.5 0.0024 17.6 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|20092851|ref|NP_618926.1| - 0.003 18.0 0.2 0.0036 17.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|20092851|ref|NP_618926.1| - 0.0039 17.2 0.0 0.0052 16.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|20092851|ref|NP_618926.1| - 0.0045 16.7 0.2 0.0059 16.4 0.2 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|20092851|ref|NP_618926.1| - 0.0045 17.1 0.1 0.0055 16.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|20092851|ref|NP_618926.1| - 0.011 15.2 0.2 0.016 14.8 0.2 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|20092851|ref|NP_618926.1| - 0.023 14.4 0.1 0.035 13.8 0.1 1.4 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|20092851|ref|NP_618926.1| - 0.034 14.5 0.3 0.046 14.1 0.3 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF2089 PF09862.9 gi|20092851|ref|NP_618926.1| - 0.04 14.0 0.2 0.043 13.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_29 PF13551.6 gi|20092851|ref|NP_618926.1| - 0.045 13.8 0.0 0.057 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix TBPIP PF07106.13 gi|20092851|ref|NP_618926.1| - 0.053 13.5 2.4 0.66 9.9 0.6 2.2 1 1 1 2 2 2 0 TBPIP/Hop2 winged helix domain MarR_2 PF12802.7 gi|20092851|ref|NP_618926.1| - 0.15 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 MarR family SUI1 PF01253.22 gi|20092852|ref|NP_618927.1| - 1e-20 74.1 0.1 1.2e-20 73.7 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|20092852|ref|NP_618927.1| - 0.013 15.2 0.5 0.018 14.8 0.5 1.3 1 0 0 1 1 1 0 DTW domain Img2 PF05046.14 gi|20092852|ref|NP_618927.1| - 0.036 14.3 0.2 0.09 13.1 0.2 1.7 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Sigma70_r4 PF04545.16 gi|20092853|ref|NP_618928.1| - 0.00072 19.0 0.0 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|20092853|ref|NP_618928.1| - 0.0016 18.5 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|20092853|ref|NP_618928.1| - 0.0032 17.1 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|20092853|ref|NP_618928.1| - 0.0045 16.5 0.0 0.0095 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|20092853|ref|NP_618928.1| - 0.017 15.5 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|20092853|ref|NP_618928.1| - 0.039 13.9 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.6 gi|20092853|ref|NP_618928.1| - 0.055 13.9 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain zf-RanBP PF00641.18 gi|20092853|ref|NP_618928.1| - 0.077 12.3 3.6 0.12 11.7 0.0 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HTH_Crp_2 PF13545.6 gi|20092853|ref|NP_618928.1| - 0.08 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Nre_N PF04894.12 gi|20092854|ref|NP_618929.1| - 1.5e-104 349.7 0.0 1.8e-104 349.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|20092854|ref|NP_618929.1| - 1.4e-40 137.6 0.0 2.2e-40 137.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF4096 PF13340.6 gi|20092855|ref|NP_618930.1| - 2e-26 92.0 0.4 5.2e-26 90.7 0.4 1.8 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.21 gi|20092855|ref|NP_618930.1| - 3e-13 49.9 5.8 1.1e-12 48.0 5.8 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|20092855|ref|NP_618930.1| - 3.6e-11 43.3 1.3 5.7e-11 42.6 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain SAICAR_synt PF01259.18 gi|20092856|ref|NP_618931.1| - 2.2e-61 207.7 0.4 2.7e-61 207.4 0.4 1.1 1 0 0 1 1 1 1 SAICAR synthetase AAA PF00004.29 gi|20092857|ref|NP_618932.1| - 5.4e-38 130.4 0.1 3.7e-37 127.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|20092857|ref|NP_618932.1| - 9.7e-13 47.7 0.2 2.9e-12 46.2 0.2 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|20092857|ref|NP_618932.1| - 5.8e-06 26.3 0.2 3.2e-05 24.0 0.0 2.4 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|20092857|ref|NP_618932.1| - 6.8e-06 26.7 0.0 3.1e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|20092857|ref|NP_618932.1| - 5.7e-05 23.6 0.3 0.0014 19.1 0.1 2.7 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20092857|ref|NP_618932.1| - 0.00013 22.2 1.2 0.0094 16.2 0.0 3.5 3 2 2 5 5 5 1 AAA domain AAA_33 PF13671.6 gi|20092857|ref|NP_618932.1| - 0.00031 20.9 0.0 0.00069 19.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|20092857|ref|NP_618932.1| - 0.00035 20.3 0.1 0.00067 19.4 0.1 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|20092857|ref|NP_618932.1| - 0.0004 20.5 2.6 0.00075 19.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.6 gi|20092857|ref|NP_618932.1| - 0.00059 20.3 0.9 0.073 13.5 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|20092857|ref|NP_618932.1| - 0.00076 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|20092857|ref|NP_618932.1| - 0.0011 18.2 0.7 0.0045 16.2 0.0 2.3 2 1 1 3 3 3 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|20092857|ref|NP_618932.1| - 0.0012 19.1 0.0 0.0036 17.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|20092857|ref|NP_618932.1| - 0.0013 17.9 0.0 0.0032 16.7 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|20092857|ref|NP_618932.1| - 0.0029 17.2 0.7 0.12 11.9 0.0 2.7 2 1 1 3 3 3 1 AAA domain Mg_chelatase PF01078.21 gi|20092857|ref|NP_618932.1| - 0.0038 16.6 0.0 0.011 15.1 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|20092857|ref|NP_618932.1| - 0.0046 16.8 0.6 0.036 13.8 0.1 2.1 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|20092857|ref|NP_618932.1| - 0.0086 16.1 0.0 0.024 14.7 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|20092857|ref|NP_618932.1| - 0.0091 15.7 0.0 0.026 14.2 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein SKI PF01202.22 gi|20092857|ref|NP_618932.1| - 0.0098 16.0 0.0 0.027 14.6 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase Cytidylate_kin PF02224.18 gi|20092857|ref|NP_618932.1| - 0.012 15.3 0.4 0.054 13.2 0.0 2.1 2 1 0 2 2 2 0 Cytidylate kinase AAA_14 PF13173.6 gi|20092857|ref|NP_618932.1| - 0.037 14.1 0.0 0.15 12.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|20092857|ref|NP_618932.1| - 0.044 13.9 0.1 0.42 10.7 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase CPT PF07931.12 gi|20092857|ref|NP_618932.1| - 0.079 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|20092857|ref|NP_618932.1| - 0.1 12.3 0.0 0.31 10.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|20092857|ref|NP_618932.1| - 0.11 12.7 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|20092857|ref|NP_618932.1| - 0.13 12.0 0.0 0.37 10.5 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|20092857|ref|NP_618932.1| - 0.13 12.6 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|20092857|ref|NP_618932.1| - 0.15 12.6 0.2 0.48 10.9 0.0 2.2 2 1 0 2 2 2 0 ABC transporter Lactamase_B_2 PF12706.7 gi|20092858|ref|NP_618933.1| - 3.4e-31 108.4 0.1 4.4e-31 108.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|20092858|ref|NP_618933.1| - 8.7e-21 74.8 0.3 1.4e-20 74.2 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|20092858|ref|NP_618933.1| - 8.5e-08 32.2 0.4 1.8e-07 31.2 0.4 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DNA_photolyase PF00875.18 gi|20092859|ref|NP_618934.1| - 9.1e-33 113.6 0.0 2.2e-32 112.3 0.0 1.6 2 0 0 2 2 2 1 DNA photolyase FAD_binding_7 PF03441.14 gi|20092859|ref|NP_618934.1| - 0.00049 19.6 0.1 0.00076 19.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DUF378 PF04070.12 gi|20092860|ref|NP_618935.1| - 2.7e-25 88.0 10.2 3.1e-25 87.8 10.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF751 PF05421.11 gi|20092860|ref|NP_618935.1| - 0.014 16.1 4.6 2 9.2 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF751) TssN PF17555.2 gi|20092860|ref|NP_618935.1| - 0.061 12.7 2.0 0.069 12.5 2.0 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN PRA1 PF03208.19 gi|20092860|ref|NP_618935.1| - 0.078 12.6 2.0 0.094 12.3 2.0 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF1180 PF06679.12 gi|20092860|ref|NP_618935.1| - 0.19 12.2 0.3 0.26 11.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) DUF2304 PF10066.9 gi|20092860|ref|NP_618935.1| - 0.22 11.8 4.1 0.48 10.7 4.1 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) AhpC-TSA PF00578.21 gi|20092861|ref|NP_618936.1| - 8.1e-37 125.9 0.0 9.6e-37 125.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|20092861|ref|NP_618936.1| - 2.5e-19 69.5 0.0 2.9e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|20092861|ref|NP_618936.1| - 0.0033 17.3 0.0 0.005 16.8 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|20092861|ref|NP_618936.1| - 0.0052 17.1 0.0 0.008 16.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|20092861|ref|NP_618936.1| - 0.15 12.1 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|20092861|ref|NP_618936.1| - 0.16 11.5 0.0 0.19 11.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) PPC PF04151.15 gi|20092862|ref|NP_618937.1| - 0.0041 18.2 0.2 0.39 11.8 0.1 2.4 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain DUF4501 PF14946.6 gi|20092862|ref|NP_618937.1| - 0.25 11.4 0.3 0.55 10.3 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) Pam17 PF08566.10 gi|20092862|ref|NP_618937.1| - 0.29 11.0 0.4 0.48 10.3 0.4 1.3 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 Pyr_excise PF03013.14 gi|20092863|ref|NP_618938.1| - 1.6e-10 41.1 0.6 2.6e-10 40.4 0.6 1.5 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase TrmB PF01978.19 gi|20092864|ref|NP_618939.1| - 0.00013 21.8 0.1 0.56 10.1 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB LIM PF00412.22 gi|20092864|ref|NP_618939.1| - 0.0019 18.4 0.6 0.0041 17.3 0.6 1.6 1 0 0 1 1 1 1 LIM domain Penicillinase_R PF03965.16 gi|20092864|ref|NP_618939.1| - 0.004 17.5 0.0 0.056 13.8 0.0 2.1 2 0 0 2 2 2 1 Penicillinase repressor XPA_N PF01286.18 gi|20092864|ref|NP_618939.1| - 0.083 12.9 0.3 0.21 11.6 0.3 1.7 1 0 0 1 1 1 0 XPA protein N-terminal HTH_9 PF08221.11 gi|20092864|ref|NP_618939.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain UPF0167 PF03691.14 gi|20092864|ref|NP_618939.1| - 0.14 12.0 1.2 3 7.6 0.4 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0167) TFIIS_C PF01096.18 gi|20092864|ref|NP_618939.1| - 0.43 10.5 0.0 0.43 10.5 0.0 2.0 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-dskA_traR PF01258.17 gi|20092864|ref|NP_618939.1| - 0.61 10.1 3.8 2.3 8.3 3.8 1.9 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger CMD PF02627.20 gi|20092865|ref|NP_618940.1| - 6.6e-18 64.5 0.0 8e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family AMP-binding PF00501.28 gi|20092867|ref|NP_618942.1| - 4.2e-17 61.9 0.0 5.4e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|20092867|ref|NP_618942.1| - 0.0047 17.0 0.0 0.019 14.9 0.0 2.0 1 1 1 2 2 2 1 SIS domain NikR_C PF08753.11 gi|20092868|ref|NP_618943.1| - 3.7e-34 116.7 2.7 5e-34 116.3 2.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|20092868|ref|NP_618943.1| - 2.6e-09 36.7 2.0 3e-09 36.5 0.1 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|20092868|ref|NP_618943.1| - 0.0021 18.2 0.1 0.012 15.7 0.0 2.1 2 1 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|20092868|ref|NP_618943.1| - 0.094 12.9 0.0 0.17 12.1 0.0 1.4 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family OpcA_G6PD_assem PF10128.9 gi|20092868|ref|NP_618943.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase subunit HTH_5 PF01022.20 gi|20092869|ref|NP_618944.1| - 6.5e-16 57.9 0.8 1e-15 57.3 0.8 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20092869|ref|NP_618944.1| - 2e-13 50.2 1.0 3.5e-13 49.4 0.5 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|20092869|ref|NP_618944.1| - 0.003 17.4 0.4 0.0079 16.1 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|20092869|ref|NP_618944.1| - 0.0076 16.7 0.0 0.016 15.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|20092869|ref|NP_618944.1| - 0.0082 16.4 0.1 0.012 15.9 0.0 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) ArsR PF09824.9 gi|20092869|ref|NP_618944.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF505 PF04458.12 gi|20092869|ref|NP_618944.1| - 0.061 11.7 0.3 0.13 10.6 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF505) HTH_24 PF13412.6 gi|20092869|ref|NP_618944.1| - 0.067 12.8 0.1 0.87 9.2 0.1 2.3 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|20092869|ref|NP_618944.1| - 0.072 13.1 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix LPG_synthase_TM PF03706.13 gi|20092870|ref|NP_618945.1| - 1.6e-42 146.1 25.4 2.1e-42 145.7 25.4 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|20092870|ref|NP_618945.1| - 0.016 15.0 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 VF530 PF09905.9 gi|20092870|ref|NP_618945.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 DNA-binding protein VF530 DUF2298 PF10060.9 gi|20092871|ref|NP_618946.1| - 9.7e-119 397.3 36.7 1.3e-118 396.9 36.7 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) SHP PF03579.13 gi|20092871|ref|NP_618946.1| - 3.1 7.9 5.8 0.65 10.0 0.7 2.4 2 0 0 2 2 2 0 Small hydrophobic protein PetN PF03742.14 gi|20092871|ref|NP_618946.1| - 4.6 7.2 7.0 10 6.1 1.2 3.3 2 0 0 2 2 2 0 PetN Aldedh PF00171.22 gi|20092872|ref|NP_618947.1| - 3.1e-164 546.9 0.0 3.8e-164 546.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Amino_oxidase PF01593.24 gi|20092874|ref|NP_618949.1| - 4.9e-33 115.1 0.0 5.6e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|20092874|ref|NP_618949.1| - 1.4e-15 57.8 0.0 2.2e-14 53.8 0.0 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|20092874|ref|NP_618949.1| - 2.6e-11 43.6 0.4 7.3e-11 42.1 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|20092874|ref|NP_618949.1| - 2.8e-08 33.3 0.1 0.00063 18.9 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|20092874|ref|NP_618949.1| - 0.00039 19.2 0.1 0.72 8.5 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|20092874|ref|NP_618949.1| - 0.00066 19.0 0.9 0.0098 15.2 0.1 2.4 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|20092874|ref|NP_618949.1| - 0.00067 20.2 0.7 0.59 10.7 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|20092874|ref|NP_618949.1| - 0.00074 18.8 0.0 0.014 14.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|20092874|ref|NP_618949.1| - 0.0062 16.5 0.1 0.092 12.7 0.0 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|20092874|ref|NP_618949.1| - 0.025 13.7 0.2 1.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|20092874|ref|NP_618949.1| - 0.025 13.6 0.0 5.7 5.9 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|20092874|ref|NP_618949.1| - 0.078 12.3 0.0 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase MCRA PF06100.11 gi|20092874|ref|NP_618949.1| - 0.097 11.4 0.0 0.19 10.5 0.0 1.5 2 0 0 2 2 2 0 MCRA family FAD_binding_3 PF01494.19 gi|20092874|ref|NP_618949.1| - 0.11 11.7 0.0 0.66 9.2 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain E1-E2_ATPase PF00122.20 gi|20092875|ref|NP_618950.1| - 4.2e-56 189.3 2.9 1.3e-55 187.8 0.2 2.9 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|20092875|ref|NP_618950.1| - 8.4e-46 156.0 8.5 8.4e-46 156.0 8.5 2.7 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|20092875|ref|NP_618950.1| - 4.4e-26 92.5 1.3 1.7e-25 90.6 1.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|20092875|ref|NP_618950.1| - 4e-25 87.7 0.0 1.8e-24 85.6 0.0 2.1 2 0 0 2 2 2 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|20092875|ref|NP_618950.1| - 8.7e-22 76.6 0.1 2.3e-21 75.3 0.1 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|20092875|ref|NP_618950.1| - 6.4e-06 26.1 2.3 0.0047 16.7 0.8 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20092875|ref|NP_618950.1| - 4.6e-05 23.9 0.0 0.0001 22.8 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase POTRA_1 PF08478.10 gi|20092875|ref|NP_618950.1| - 0.12 12.7 0.4 3.5 8.0 0.0 2.8 2 0 0 2 2 2 0 POTRA domain, FtsQ-type Na_H_Exchanger PF00999.21 gi|20092876|ref|NP_618951.1| - 4.9e-53 180.3 57.0 6e-53 180.0 57.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Rab5ip PF07019.12 gi|20092876|ref|NP_618951.1| - 0.0086 16.6 0.0 0.0086 16.6 0.0 4.5 3 1 0 3 3 3 1 Rab5-interacting protein (Rab5ip) CBS PF00571.28 gi|20092877|ref|NP_618952.1| - 2.1e-25 88.9 1.5 1.2e-11 44.9 0.1 2.2 2 0 0 2 2 2 2 CBS domain PMT PF02366.18 gi|20092878|ref|NP_618953.1| - 2.3e-11 43.8 10.3 2.3e-11 43.8 10.3 2.2 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.6 gi|20092878|ref|NP_618953.1| - 5.9e-10 39.6 11.3 5.9e-10 39.6 11.3 3.9 2 1 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase ThiS PF02597.20 gi|20092879|ref|NP_618954.1| - 1.7e-18 67.0 0.0 1.9e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family MoeA_N PF03453.17 gi|20092880|ref|NP_618955.1| - 8e-43 145.9 0.5 1.3e-42 145.3 0.5 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|20092880|ref|NP_618955.1| - 2.2e-23 82.5 0.0 3.5e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|20092880|ref|NP_618955.1| - 1.4e-13 50.8 1.4 2.7e-13 49.9 0.1 2.2 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) CRCB PF02537.15 gi|20092881|ref|NP_618956.1| - 1.3e-17 63.9 10.1 1.6e-17 63.6 10.1 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|20092882|ref|NP_618957.1| - 1.1e-22 80.2 5.6 1.2e-22 80.0 5.6 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CxxCxxCC PF03692.15 gi|20092884|ref|NP_618959.1| - 1.2e-10 41.9 4.9 1.6e-10 41.5 3.7 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain RibD_C PF01872.17 gi|20092885|ref|NP_618960.1| - 8e-54 182.5 0.0 8.9e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.28 gi|20092886|ref|NP_618961.1| - 5.6e-44 148.4 12.8 1.8e-14 53.9 0.1 4.2 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|20092886|ref|NP_618961.1| - 0.0042 17.7 0.1 0.23 12.1 0.0 2.7 1 1 1 2 2 2 1 GAF domain Peptidase_S55 PF05580.12 gi|20092886|ref|NP_618961.1| - 0.02 14.8 0.2 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 SpoIVB peptidase S55 CAAD PF14159.6 gi|20092886|ref|NP_618961.1| - 0.046 13.6 0.9 5.4 6.9 0.2 3.5 3 1 1 4 4 4 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase H_kinase_N PF12282.8 gi|20092886|ref|NP_618961.1| - 0.11 12.4 0.8 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Signal transduction histidine kinase Usp PF00582.26 gi|20092887|ref|NP_618962.1| - 4.6e-39 134.1 0.0 5.2e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|20092888|ref|NP_618963.1| - 2.6e-28 99.3 0.1 1.4e-27 96.9 0.1 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|20092888|ref|NP_618963.1| - 2.8e-08 33.7 0.0 5.8e-07 29.3 0.0 2.5 2 1 1 3 3 3 1 Amidohydrolase family A_deaminase PF00962.22 gi|20092888|ref|NP_618963.1| - 2.8e-06 26.9 0.0 5.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Peripla_BP_2 PF01497.18 gi|20092888|ref|NP_618963.1| - 0.024 14.2 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein CRM1_repeat PF18777.1 gi|20092888|ref|NP_618963.1| - 0.22 11.0 0.3 0.44 10.1 0.3 1.4 1 0 0 1 1 1 0 Chromosome region maintenance or exportin repeat DUF167 PF02594.16 gi|20092890|ref|NP_618965.1| - 1.7e-20 72.9 0.2 2.1e-20 72.6 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF2805 PF10985.8 gi|20092890|ref|NP_618965.1| - 0.13 12.6 0.2 0.28 11.6 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2805) Toprim_4 PF13662.6 gi|20092891|ref|NP_618966.1| - 3.4e-06 27.4 0.0 1.7e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|20092891|ref|NP_618966.1| - 2.6e-05 24.4 0.0 0.00016 21.9 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|20092891|ref|NP_618966.1| - 0.057 13.8 0.0 0.11 12.9 0.0 1.5 1 1 0 1 1 1 0 Toprim-like FRP PF18032.1 gi|20092891|ref|NP_618966.1| - 0.12 13.1 0.2 0.86 10.3 0.0 2.1 2 0 0 2 2 2 0 Photoprotection regulator fluorescence recovery protein HAD_SAK_2 PF18143.1 gi|20092891|ref|NP_618966.1| - 0.15 12.4 0.0 0.21 11.9 0.0 1.3 1 1 0 1 1 1 0 HAD domain in Swiss Army Knife RNA repair proteins DUF356 PF04009.12 gi|20092892|ref|NP_618967.1| - 1.5e-43 147.4 0.1 1.9e-43 147.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Aldedh PF00171.22 gi|20092893|ref|NP_618968.1| - 1.7e-17 63.1 0.3 4.8e-13 48.4 0.1 2.3 2 1 0 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.28 gi|20092894|ref|NP_618969.1| - 1.8e-41 142.3 0.1 2.3e-41 142.0 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 gi|20092894|ref|NP_618969.1| - 3.3e-18 65.4 0.3 8e-18 64.2 0.3 1.7 1 0 0 1 1 1 1 PUA domain P5CR_dimer PF14748.6 gi|20092895|ref|NP_618970.1| - 1.1e-39 134.9 2.4 2.7e-39 133.6 2.4 1.7 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|20092895|ref|NP_618970.1| - 3.8e-21 75.5 1.3 1.1e-20 74.1 0.5 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|20092895|ref|NP_618970.1| - 5.4e-06 26.7 0.4 1.3e-05 25.4 0.4 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|20092895|ref|NP_618970.1| - 7.3e-05 22.8 3.6 0.00078 19.5 3.6 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_C PF16653.5 gi|20092895|ref|NP_618970.1| - 0.013 15.6 0.7 0.031 14.4 0.0 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase C-terminal domain PDH PF02153.17 gi|20092895|ref|NP_618970.1| - 0.018 14.1 0.3 0.042 12.8 0.3 1.7 1 1 0 1 1 1 0 Prephenate dehydrogenase 3HCDH_RFF PF18321.1 gi|20092895|ref|NP_618970.1| - 0.04 14.4 0.1 0.18 12.3 0.1 2.1 2 0 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ApbA PF02558.16 gi|20092895|ref|NP_618970.1| - 0.35 10.5 0.0 0.35 10.5 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AhpC-TSA PF00578.21 gi|20092896|ref|NP_618971.1| - 4.3e-33 113.9 0.0 5.9e-33 113.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|20092896|ref|NP_618971.1| - 1.8e-14 53.7 0.0 2.5e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|20092896|ref|NP_618971.1| - 4.9e-14 51.9 0.6 2.1e-13 49.9 0.4 2.0 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin P_C10 PF14974.6 gi|20092896|ref|NP_618971.1| - 0.015 15.4 0.0 0.028 14.5 0.0 1.6 1 0 0 1 1 1 0 Protein C10 SCO1-SenC PF02630.14 gi|20092896|ref|NP_618971.1| - 0.023 14.6 0.1 0.051 13.5 0.0 1.6 2 0 0 2 2 2 0 SCO1/SenC DUF1722 PF08349.11 gi|20092897|ref|NP_618972.1| - 3.8e-38 130.4 0.1 5.7e-38 129.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|20092897|ref|NP_618972.1| - 8.9e-35 119.7 0.0 1.3e-34 119.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) PspC PF04024.12 gi|20092899|ref|NP_618974.1| - 9.5e-26 89.4 0.8 1e-25 89.3 0.8 1.0 1 0 0 1 1 1 1 PspC domain DDE_Tnp_IS1 PF03400.13 gi|20092900|ref|NP_618975.1| - 4.6e-14 52.9 0.3 5.2e-14 52.7 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20092901|ref|NP_618976.1| - 2.3e-06 27.2 0.0 4.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20092901|ref|NP_618976.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20092901|ref|NP_618976.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20092901|ref|NP_618976.1| - 0.0019 17.9 0.4 0.0069 16.1 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20092901|ref|NP_618976.1| - 0.0064 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20092901|ref|NP_618976.1| - 0.0071 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20092901|ref|NP_618976.1| - 0.0098 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|20092901|ref|NP_618976.1| - 0.02 13.9 0.1 0.032 13.2 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20092901|ref|NP_618976.1| - 0.043 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20092901|ref|NP_618976.1| - 0.056 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20092901|ref|NP_618976.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20092901|ref|NP_618976.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20092901|ref|NP_618976.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin SRP54 PF00448.22 gi|20092902|ref|NP_618977.1| - 8.8e-72 240.9 0.2 1.4e-71 240.2 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|20092902|ref|NP_618977.1| - 7.1e-09 35.8 0.4 7.1e-09 35.8 0.4 3.0 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|20092902|ref|NP_618977.1| - 1.7e-05 24.2 0.1 3.1e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|20092902|ref|NP_618977.1| - 6e-05 22.9 0.4 0.00014 21.7 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|20092902|ref|NP_618977.1| - 0.00011 22.7 0.1 0.00044 20.7 0.1 2.1 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|20092902|ref|NP_618977.1| - 0.00055 19.9 0.1 0.001 19.0 0.1 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_28 PF13521.6 gi|20092902|ref|NP_618977.1| - 0.001 19.3 1.1 0.0024 18.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|20092902|ref|NP_618977.1| - 0.0013 18.4 0.9 0.028 14.1 0.0 2.8 3 0 0 3 3 3 1 Thymidylate kinase cobW PF02492.19 gi|20092902|ref|NP_618977.1| - 0.0044 16.6 0.2 0.01 15.5 0.2 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|20092902|ref|NP_618977.1| - 0.0045 17.4 0.5 0.024 15.0 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|20092902|ref|NP_618977.1| - 0.0072 16.8 0.1 0.033 14.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|20092902|ref|NP_618977.1| - 0.012 16.1 0.6 0.66 10.5 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|20092902|ref|NP_618977.1| - 0.014 14.9 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|20092902|ref|NP_618977.1| - 0.015 15.5 0.1 0.053 13.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|20092902|ref|NP_618977.1| - 0.02 14.8 1.0 0.054 13.4 1.0 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|20092902|ref|NP_618977.1| - 0.038 14.1 3.6 0.055 13.5 0.7 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|20092902|ref|NP_618977.1| - 0.041 12.9 0.0 0.092 11.7 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|20092902|ref|NP_618977.1| - 0.044 13.9 0.0 0.092 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|20092902|ref|NP_618977.1| - 0.05 13.5 0.7 0.13 12.1 0.2 2.0 2 0 0 2 2 1 0 NTPase ResIII PF04851.15 gi|20092902|ref|NP_618977.1| - 0.074 13.1 0.1 0.074 13.1 0.1 1.8 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|20092902|ref|NP_618977.1| - 0.077 12.2 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arf PF00025.21 gi|20092902|ref|NP_618977.1| - 0.1 12.1 0.0 0.26 10.7 0.0 1.7 1 0 0 1 1 1 0 ADP-ribosylation factor family G-alpha PF00503.20 gi|20092902|ref|NP_618977.1| - 0.13 11.4 0.4 6.1 5.9 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit HAUS-augmin3 PF14932.6 gi|20092902|ref|NP_618977.1| - 5.6 6.5 11.1 0.6 9.6 6.7 1.6 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Prefoldin PF02996.17 gi|20092903|ref|NP_618978.1| - 1.1e-32 112.5 2.8 1.1e-32 112.4 2.2 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|20092903|ref|NP_618978.1| - 9.9e-07 28.7 6.7 0.00023 21.1 1.0 2.1 2 0 0 2 2 2 2 Prefoldin subunit Spc7 PF08317.11 gi|20092903|ref|NP_618978.1| - 0.00075 18.5 10.7 0.031 13.2 2.3 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein IES5 PF17335.2 gi|20092903|ref|NP_618978.1| - 0.00093 19.4 1.2 0.055 13.7 0.0 2.1 2 0 0 2 2 2 1 Ino80 complex subunit 5 CENP-F_leu_zip PF10473.9 gi|20092903|ref|NP_618978.1| - 0.0012 18.9 8.9 0.035 14.1 2.3 2.1 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 UPF0242 PF06785.11 gi|20092903|ref|NP_618978.1| - 0.0014 18.7 3.4 0.049 13.7 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus TACC_C PF05010.14 gi|20092903|ref|NP_618978.1| - 0.0019 18.0 0.9 0.0028 17.5 0.9 1.2 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF948 PF06103.11 gi|20092903|ref|NP_618978.1| - 0.002 18.4 1.1 0.091 13.0 0.1 2.2 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF5320 PF17253.2 gi|20092903|ref|NP_618978.1| - 0.0026 18.8 1.0 0.46 11.6 0.0 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF5320) PI3K_P85_iSH2 PF16454.5 gi|20092903|ref|NP_618978.1| - 0.0031 17.1 5.1 0.41 10.2 0.3 2.2 2 0 0 2 2 2 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain RasGAP_C PF03836.15 gi|20092903|ref|NP_618978.1| - 0.0061 16.7 3.6 0.89 9.7 0.2 2.1 1 1 1 2 2 2 2 RasGAP C-terminus BST2 PF16716.5 gi|20092903|ref|NP_618978.1| - 0.0099 16.4 6.1 0.48 11.0 0.5 2.4 2 0 0 2 2 2 1 Bone marrow stromal antigen 2 DUF3450 PF11932.8 gi|20092903|ref|NP_618978.1| - 0.01 15.2 11.6 0.23 10.7 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) JIP_LZII PF16471.5 gi|20092903|ref|NP_618978.1| - 0.011 15.9 8.3 0.12 12.6 0.6 2.2 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II GIT_CC PF16559.5 gi|20092903|ref|NP_618978.1| - 0.012 15.5 9.1 0.079 12.8 2.4 2.3 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF1664 PF07889.12 gi|20092903|ref|NP_618978.1| - 0.014 15.4 3.2 1.8 8.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF3138 PF11336.8 gi|20092903|ref|NP_618978.1| - 0.016 13.9 0.4 0.016 13.9 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3138) HAUS-augmin3 PF14932.6 gi|20092903|ref|NP_618978.1| - 0.016 14.8 6.8 0.33 10.5 1.1 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 KxDL PF10241.9 gi|20092903|ref|NP_618978.1| - 0.019 15.2 4.1 0.28 11.5 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein DUF4795 PF16043.5 gi|20092903|ref|NP_618978.1| - 0.02 14.5 4.2 1.5 8.4 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Cep57_MT_bd PF06657.13 gi|20092903|ref|NP_618978.1| - 0.021 15.3 4.2 0.2 12.2 0.2 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 GAS PF13851.6 gi|20092903|ref|NP_618978.1| - 0.021 14.2 7.8 0.65 9.3 2.3 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding CdvA PF18822.1 gi|20092903|ref|NP_618978.1| - 0.024 14.4 6.8 0.12 12.2 1.5 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain SIKE PF05769.11 gi|20092903|ref|NP_618978.1| - 0.024 14.6 5.7 0.032 14.2 0.4 2.0 2 0 0 2 2 2 0 SIKE family DegS PF05384.11 gi|20092903|ref|NP_618978.1| - 0.025 14.1 4.9 0.18 11.3 1.5 2.1 2 0 0 2 2 2 0 Sensor protein DegS Seryl_tRNA_N PF02403.22 gi|20092903|ref|NP_618978.1| - 0.025 14.8 5.5 0.35 11.1 0.4 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CHDCT2 PF08074.11 gi|20092903|ref|NP_618978.1| - 0.027 14.6 0.9 0.058 13.6 0.8 1.5 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain DUF4200 PF13863.6 gi|20092903|ref|NP_618978.1| - 0.03 14.7 7.8 0.48 10.8 2.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) ADIP PF11559.8 gi|20092903|ref|NP_618978.1| - 0.031 14.3 9.0 0.17 11.9 1.5 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF148 PF02520.17 gi|20092903|ref|NP_618978.1| - 0.037 14.1 4.6 0.29 11.3 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF148 TolA_bind_tri PF16331.5 gi|20092903|ref|NP_618978.1| - 0.041 14.0 9.9 0.45 10.6 2.6 2.3 2 0 0 2 2 2 0 TolA binding protein trimerisation TBCC_N PF16752.5 gi|20092903|ref|NP_618978.1| - 0.058 13.8 3.9 0.44 11.0 0.4 2.2 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain CENP-Q PF13094.6 gi|20092903|ref|NP_618978.1| - 0.062 13.5 8.7 0.069 13.3 2.2 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Sec3_C_2 PF15278.6 gi|20092903|ref|NP_618978.1| - 0.068 13.5 1.8 2.2 8.7 0.1 2.2 2 0 0 2 2 2 0 Sec3 exocyst complex subunit DUF4778 PF16008.5 gi|20092903|ref|NP_618978.1| - 0.072 13.1 0.5 0.087 12.9 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4778) YkyA PF10368.9 gi|20092903|ref|NP_618978.1| - 0.073 12.7 4.8 0.21 11.2 0.5 2.1 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF2935 PF11155.8 gi|20092903|ref|NP_618978.1| - 0.077 13.3 0.4 0.097 13.0 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2935) FapA PF03961.13 gi|20092903|ref|NP_618978.1| - 0.078 11.6 3.3 2.4 6.7 0.4 2.0 2 0 0 2 2 2 0 Flagellar Assembly Protein A bZIP_1 PF00170.21 gi|20092903|ref|NP_618978.1| - 0.08 13.0 6.1 1.5 8.9 0.1 2.3 2 0 0 2 2 2 0 bZIP transcription factor DUF4515 PF14988.6 gi|20092903|ref|NP_618978.1| - 0.083 12.7 8.2 0.7 9.7 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Myc-LZ PF02344.15 gi|20092903|ref|NP_618978.1| - 0.092 12.9 2.4 0.2 11.8 0.1 2.2 2 0 0 2 2 2 0 Myc leucine zipper domain Med30 PF11315.8 gi|20092903|ref|NP_618978.1| - 0.094 12.9 5.2 0.87 9.8 0.4 2.2 2 0 0 2 2 2 0 Mediator complex subunit 30 DivIVA PF05103.13 gi|20092903|ref|NP_618978.1| - 0.096 12.8 6.9 0.38 10.8 0.6 2.1 2 0 0 2 2 2 0 DivIVA protein BBS2_C PF14782.6 gi|20092903|ref|NP_618978.1| - 0.1 11.3 2.6 0.54 9.0 0.8 2.0 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal E2F_CC-MB PF16421.5 gi|20092903|ref|NP_618978.1| - 0.11 12.9 2.3 5.4 7.5 0.0 2.2 2 0 0 2 2 2 0 E2F transcription factor CC-MB domain UPF0449 PF15136.6 gi|20092903|ref|NP_618978.1| - 0.12 12.9 3.7 4.9 7.7 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF812 PF05667.11 gi|20092903|ref|NP_618978.1| - 0.13 11.1 9.7 0.8 8.5 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Tektin PF03148.14 gi|20092903|ref|NP_618978.1| - 0.13 10.9 8.3 1.2 7.8 1.2 2.0 2 0 0 2 2 2 0 Tektin family Fib_alpha PF08702.10 gi|20092903|ref|NP_618978.1| - 0.16 12.2 3.7 1.4 9.1 3.7 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family USP8_interact PF08941.10 gi|20092903|ref|NP_618978.1| - 0.18 11.6 2.5 1.9 8.3 0.8 2.1 2 0 0 2 2 2 0 USP8 interacting YabA PF06156.13 gi|20092903|ref|NP_618978.1| - 0.19 12.4 5.7 5.6 7.7 1.2 2.2 2 0 0 2 2 2 0 Initiation control protein YabA ATG16 PF08614.11 gi|20092903|ref|NP_618978.1| - 0.19 11.9 9.2 1.2 9.4 2.4 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) APG6_N PF17675.1 gi|20092903|ref|NP_618978.1| - 0.21 12.1 15.1 0.13 12.8 5.4 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region DHR10 PF18595.1 gi|20092903|ref|NP_618978.1| - 0.23 11.6 15.3 0.21 11.7 4.2 2.5 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain BRE1 PF08647.11 gi|20092903|ref|NP_618978.1| - 0.24 11.5 8.3 2 8.6 2.2 2.2 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase Ax_dynein_light PF10211.9 gi|20092903|ref|NP_618978.1| - 0.24 11.3 6.8 3 7.8 0.5 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain BLOC1_2 PF10046.9 gi|20092903|ref|NP_618978.1| - 0.26 11.6 6.5 4.4 7.7 0.6 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMPIT PF07851.13 gi|20092903|ref|NP_618978.1| - 0.26 10.5 4.4 0.65 9.2 3.8 1.7 1 1 0 1 1 1 0 TMPIT-like protein Laminin_II PF06009.12 gi|20092903|ref|NP_618978.1| - 0.26 11.3 4.3 4.4 7.3 0.3 2.1 2 0 0 2 2 2 0 Laminin Domain II CtIP_N PF10482.9 gi|20092903|ref|NP_618978.1| - 0.27 11.3 5.3 1.5 8.9 0.2 2.1 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain CLZ PF16526.5 gi|20092903|ref|NP_618978.1| - 0.3 11.5 8.0 1.3 9.4 2.8 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Rx_N PF18052.1 gi|20092903|ref|NP_618978.1| - 0.33 11.3 3.8 1.6 9.1 0.2 2.1 2 0 0 2 2 2 0 Rx N-terminal domain DUF1043 PF06295.12 gi|20092903|ref|NP_618978.1| - 0.37 10.8 4.6 0.31 11.0 1.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) AAA_13 PF13166.6 gi|20092903|ref|NP_618978.1| - 0.37 9.4 5.9 2.7 6.5 0.7 2.0 2 0 0 2 2 2 0 AAA domain OmpH PF03938.14 gi|20092903|ref|NP_618978.1| - 0.44 10.9 8.2 1.3 9.4 1.7 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) IFT57 PF10498.9 gi|20092903|ref|NP_618978.1| - 0.53 9.2 5.0 2 7.3 0.3 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Vir_act_alpha_C PF10400.9 gi|20092903|ref|NP_618978.1| - 0.53 11.0 4.8 1.7 9.4 0.6 2.2 2 0 0 2 2 2 0 Virulence activator alpha C-term TSC22 PF01166.18 gi|20092903|ref|NP_618978.1| - 0.57 10.5 4.0 0.55 10.6 0.2 2.5 2 1 0 2 2 2 0 TSC-22/dip/bun family kleA_kleC PF17383.2 gi|20092903|ref|NP_618978.1| - 0.69 10.3 5.7 0.22 11.9 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized KorC regulated protein A Vps51 PF08700.11 gi|20092903|ref|NP_618978.1| - 0.71 10.0 5.9 9.1 6.4 0.3 2.6 2 1 0 2 2 2 0 Vps51/Vps67 LXG PF04740.12 gi|20092903|ref|NP_618978.1| - 0.76 9.4 7.0 1.2 8.8 2.1 2.1 2 0 0 2 2 2 0 LXG domain of WXG superfamily DASH_Spc19 PF08287.11 gi|20092903|ref|NP_618978.1| - 0.95 9.3 9.5 3.9 7.3 5.7 2.4 1 1 1 2 2 2 0 Spc19 DivIC PF04977.15 gi|20092903|ref|NP_618978.1| - 0.95 9.3 8.2 2.9 7.7 0.4 2.7 2 1 0 2 2 2 0 Septum formation initiator FlaC_arch PF05377.11 gi|20092903|ref|NP_618978.1| - 1 9.8 7.1 4.5 7.8 0.6 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) HemX PF04375.14 gi|20092903|ref|NP_618978.1| - 1 8.6 8.4 53 3.0 8.4 2.0 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase APG17 PF04108.12 gi|20092903|ref|NP_618978.1| - 1.1 8.2 6.8 4.1 6.4 1.3 1.9 1 1 0 2 2 2 0 Autophagy protein Apg17 EMP24_GP25L PF01105.24 gi|20092903|ref|NP_618978.1| - 1.2 9.1 3.9 2 8.4 0.1 2.0 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF4140 PF13600.6 gi|20092903|ref|NP_618978.1| - 1.2 9.6 9.9 4.6 7.7 1.3 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) WXG100 PF06013.12 gi|20092903|ref|NP_618978.1| - 1.3 9.3 7.5 6.9 7.0 1.2 2.4 2 0 0 2 2 2 0 Proteins of 100 residues with WXG CC2-LZ PF16516.5 gi|20092903|ref|NP_618978.1| - 1.4 9.4 8.9 5.1 7.5 1.5 2.2 2 0 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF724 PF05266.14 gi|20092903|ref|NP_618978.1| - 1.4 8.7 6.2 2.3 8.0 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) T3SS_needle_E PF08988.10 gi|20092903|ref|NP_618978.1| - 1.5 9.0 9.4 5.9 7.1 1.1 2.8 2 2 1 3 3 3 0 Type III secretion system, cytoplasmic E component of needle TRPM_tetra PF16519.5 gi|20092903|ref|NP_618978.1| - 1.8 8.7 7.8 1.6 8.9 1.0 2.4 2 1 0 2 2 2 0 Tetramerisation domain of TRPM Spc24 PF08286.11 gi|20092903|ref|NP_618978.1| - 1.9 8.7 7.8 6.5 7.0 0.5 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 SlyX PF04102.12 gi|20092903|ref|NP_618978.1| - 2 9.1 13.0 1.4 9.6 3.0 2.5 2 1 0 2 2 2 0 SlyX DASH_Dam1 PF08653.10 gi|20092903|ref|NP_618978.1| - 2 8.3 7.4 17 5.3 0.1 3.6 3 2 2 5 5 4 0 DASH complex subunit Dam1 MCU PF04678.13 gi|20092903|ref|NP_618978.1| - 2.2 8.3 6.0 1.4 9.0 0.6 2.1 1 1 1 2 2 2 0 Mitochondrial calcium uniporter Nup54 PF13874.6 gi|20092903|ref|NP_618978.1| - 3 8.0 8.4 25 5.0 8.4 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF16 PF01519.16 gi|20092903|ref|NP_618978.1| - 3.7 8.1 6.4 14 6.3 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 M PF02370.16 gi|20092903|ref|NP_618978.1| - 7.2 7.5 10.9 1.2 9.9 0.6 3.5 3 1 1 4 4 2 0 M protein repeat Swi5 PF07061.11 gi|20092903|ref|NP_618978.1| - 7.5 6.7 9.4 4.8 7.3 0.9 2.6 2 1 0 2 2 2 0 Swi5 ZapB PF06005.12 gi|20092903|ref|NP_618978.1| - 8.2 7.0 14.5 5.4 7.5 3.8 2.6 2 1 0 2 2 2 0 Cell division protein ZapB KfrA_N PF11740.8 gi|20092903|ref|NP_618978.1| - 9.6 6.9 12.8 5.9 7.6 1.4 2.3 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term Ribosomal_L18A PF01775.17 gi|20092904|ref|NP_618979.1| - 5.9e-12 45.7 0.5 6.3e-12 45.6 0.5 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF5035 PF16438.5 gi|20092904|ref|NP_618979.1| - 0.014 15.3 0.4 0.014 15.2 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5035) SelR PF01641.18 gi|20092904|ref|NP_618979.1| - 0.045 13.8 0.3 0.049 13.7 0.3 1.1 1 0 0 1 1 1 0 SelR domain eIF-6 PF01912.18 gi|20092905|ref|NP_618980.1| - 7.9e-65 217.9 0.7 9.4e-65 217.7 0.7 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|20092906|ref|NP_618981.1| - 3.8e-12 46.3 0.2 4.5e-12 46.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e RPA_interact_C PF14768.6 gi|20092906|ref|NP_618981.1| - 0.2 12.2 0.0 0.24 12.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Ribosomal_L39 PF00832.20 gi|20092907|ref|NP_618982.1| - 1.5e-19 69.3 11.3 1.7e-19 69.1 11.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.21 gi|20092908|ref|NP_618983.1| - 0.0018 18.0 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|20092908|ref|NP_618983.1| - 0.019 14.5 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|20092908|ref|NP_618983.1| - 0.066 12.7 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|20092908|ref|NP_618983.1| - 0.069 11.9 0.0 0.11 11.3 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.20 gi|20092909|ref|NP_618984.1| - 6.9e-29 100.4 19.0 7.7e-29 100.2 19.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain cwf18 PF08315.12 gi|20092909|ref|NP_618984.1| - 0.061 14.0 9.2 0.073 13.7 9.2 1.0 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor DUF4355 PF14265.6 gi|20092909|ref|NP_618984.1| - 0.29 11.4 16.1 0.038 14.2 11.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4355) DUF572 PF04502.13 gi|20092909|ref|NP_618984.1| - 3.4 7.2 9.1 4.1 6.9 9.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) Ribosomal_S19e PF01090.19 gi|20092910|ref|NP_618985.1| - 6.6e-55 184.6 0.0 7.4e-55 184.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|20092910|ref|NP_618985.1| - 0.036 13.9 0.0 17 5.4 0.0 2.7 3 0 0 3 3 3 0 RuvB C-terminal winged helix domain Ribosomal_S25 PF03297.15 gi|20092910|ref|NP_618985.1| - 0.12 12.5 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 S25 ribosomal protein Adenylsucc_synt PF00709.21 gi|20092911|ref|NP_618986.1| - 7.3e-162 539.1 0.0 8.2e-162 538.9 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase DUF131 PF01998.17 gi|20092912|ref|NP_618987.1| - 1.2e-27 95.3 0.2 1.2e-27 95.3 0.2 2.1 2 1 0 2 2 2 1 Protein of unknown function DUF131 DUF3784 PF12650.7 gi|20092912|ref|NP_618987.1| - 0.052 13.8 5.9 1.4 9.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF131 PF01998.17 gi|20092913|ref|NP_618988.1| - 3.6e-11 42.5 12.9 9.5e-11 41.2 12.1 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 HRG PF16954.5 gi|20092913|ref|NP_618988.1| - 0.019 15.4 2.6 1.1 9.8 0.1 2.1 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene TMEM174 PF15029.6 gi|20092913|ref|NP_618988.1| - 0.15 11.8 0.4 0.16 11.7 0.4 1.1 1 0 0 1 1 1 0 Transmembrane protein 174 MULE PF10551.9 gi|20092915|ref|NP_618990.1| - 6.1e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20092915|ref|NP_618990.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid LOH1CR12 PF10158.9 gi|20092915|ref|NP_618990.1| - 0.023 14.7 0.2 0.063 13.3 0.1 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF659 PF04937.15 gi|20092915|ref|NP_618990.1| - 0.025 14.4 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) CxC4 PF18717.1 gi|20092915|ref|NP_618990.1| - 0.043 13.6 0.9 0.12 12.3 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20092915|ref|NP_618990.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20092915|ref|NP_618990.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20092915|ref|NP_618990.1| - 0.069 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20092915|ref|NP_618990.1| - 0.2 11.7 3.5 0.44 10.6 3.5 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20092915|ref|NP_618990.1| - 0.24 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20092915|ref|NP_618990.1| - 6.9 6.6 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger AAA PF00004.29 gi|20092916|ref|NP_618991.1| - 2.8e-43 147.5 0.1 6.9e-43 146.2 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|20092916|ref|NP_618991.1| - 1.9e-11 43.6 0.0 6.4e-11 41.9 0.1 1.9 2 0 0 2 2 2 1 AAA+ lid domain AAA_16 PF13191.6 gi|20092916|ref|NP_618991.1| - 2.9e-06 27.8 0.1 0.00035 21.0 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|20092916|ref|NP_618991.1| - 3.8e-05 23.7 0.0 0.00012 22.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|20092916|ref|NP_618991.1| - 6.6e-05 22.7 0.0 0.00017 21.3 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|20092916|ref|NP_618991.1| - 0.00012 22.4 0.1 0.0075 16.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|20092916|ref|NP_618991.1| - 0.00013 22.1 0.0 0.00031 20.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|20092916|ref|NP_618991.1| - 0.0019 18.3 0.0 0.0065 16.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|20092916|ref|NP_618991.1| - 0.0041 17.3 0.0 0.0072 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|20092916|ref|NP_618991.1| - 0.0049 16.2 0.0 0.026 13.9 0.0 2.0 1 1 1 2 2 2 1 KaiC RNA_helicase PF00910.22 gi|20092916|ref|NP_618991.1| - 0.0051 17.2 0.0 0.0092 16.4 0.0 1.4 1 0 0 1 1 1 1 RNA helicase CPT PF07931.12 gi|20092916|ref|NP_618991.1| - 0.0052 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|20092916|ref|NP_618991.1| - 0.0059 16.7 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Torsin Sigma54_activat PF00158.26 gi|20092916|ref|NP_618991.1| - 0.0059 16.3 0.1 0.036 13.8 0.0 2.3 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|20092916|ref|NP_618991.1| - 0.0071 16.2 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|20092916|ref|NP_618991.1| - 0.0071 15.6 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|20092916|ref|NP_618991.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2075 PF09848.9 gi|20092916|ref|NP_618991.1| - 0.015 14.5 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|20092916|ref|NP_618991.1| - 0.024 14.7 0.0 0.057 13.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|20092916|ref|NP_618991.1| - 0.038 13.4 0.1 0.088 12.2 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.18 gi|20092916|ref|NP_618991.1| - 0.043 13.6 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|20092916|ref|NP_618991.1| - 0.043 14.3 0.0 0.093 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|20092916|ref|NP_618991.1| - 0.051 12.8 0.0 0.38 9.9 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_28 PF13521.6 gi|20092916|ref|NP_618991.1| - 0.055 13.7 0.0 0.094 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|20092916|ref|NP_618991.1| - 0.059 12.5 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|20092916|ref|NP_618991.1| - 0.066 13.1 0.3 0.2 11.6 0.2 1.8 1 1 1 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|20092916|ref|NP_618991.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|20092916|ref|NP_618991.1| - 0.14 11.7 0.0 0.31 10.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|20092916|ref|NP_618991.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|20092916|ref|NP_618991.1| - 0.16 11.7 0.6 0.41 10.3 0.6 1.8 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|20092916|ref|NP_618991.1| - 0.18 10.9 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Phage_integrase PF00589.22 gi|20092917|ref|NP_618992.1| - 2.8e-08 33.7 0.0 3.4e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family UvrD_C_2 PF13538.6 gi|20092917|ref|NP_618992.1| - 0.13 12.2 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain HicB_lk_antitox PF15919.5 gi|20092918|ref|NP_618993.1| - 1.4e-12 47.8 0.0 1.5e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|20092918|ref|NP_618993.1| - 5.7e-06 26.2 0.0 6.3e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) HicA_toxin PF07927.12 gi|20092919|ref|NP_618994.1| - 7.4e-20 70.8 0.3 8.8e-20 70.5 0.3 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, B5 PF03484.15 gi|20092919|ref|NP_618994.1| - 0.071 13.4 0.1 0.24 11.7 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetase B5 domain Phage_integrase PF00589.22 gi|20092920|ref|NP_618995.1| - 2.7e-22 79.4 0.0 4.8e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|20092920|ref|NP_618995.1| - 2.2e-08 34.5 1.2 1.4e-07 31.9 0.1 2.4 1 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|20092920|ref|NP_618995.1| - 2.4e-05 24.5 0.0 9e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|20092920|ref|NP_618995.1| - 0.00031 21.0 0.2 0.0015 18.8 0.1 2.3 1 1 0 1 1 1 1 Phage integrase SAM-like domain OMP_b-brl PF13505.6 gi|20092921|ref|NP_618996.1| - 0.073 13.2 0.3 0.085 13.0 0.3 1.2 1 0 0 1 1 1 0 Outer membrane protein beta-barrel domain Angiomotin_C PF12240.8 gi|20092922|ref|NP_618997.1| - 0.0091 15.6 0.1 0.012 15.2 0.1 1.1 1 0 0 1 1 1 1 Angiomotin C terminal Phasin PF05597.11 gi|20092922|ref|NP_618997.1| - 0.025 14.6 1.4 0.049 13.6 1.5 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) APG6_N PF17675.1 gi|20092922|ref|NP_618997.1| - 0.031 14.8 0.5 0.047 14.2 0.5 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF4200 PF13863.6 gi|20092922|ref|NP_618997.1| - 0.07 13.5 4.4 0.093 13.1 4.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Fib_alpha PF08702.10 gi|20092922|ref|NP_618997.1| - 0.11 12.6 2.2 0.14 12.3 2.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|20092922|ref|NP_618997.1| - 0.24 11.5 6.3 0.032 14.3 2.4 1.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus rve PF00665.26 gi|20092925|ref|NP_619000.1| - 3.6e-24 85.2 0.0 6.4e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20092925|ref|NP_619000.1| - 1.7e-05 24.8 0.2 3.9e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|20092925|ref|NP_619000.1| - 7.7e-05 22.4 0.6 0.00045 19.9 0.0 2.5 2 1 1 3 3 3 1 Homeodomain-like domain rve_3 PF13683.6 gi|20092925|ref|NP_619000.1| - 8.4e-05 22.3 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.6 gi|20092925|ref|NP_619000.1| - 0.00018 21.2 0.2 0.00039 20.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20092925|ref|NP_619000.1| - 0.00081 19.4 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_Tc3_1 PF11427.8 gi|20092925|ref|NP_619000.1| - 0.013 15.4 0.2 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Tc3 transposase Terminase_5 PF06056.12 gi|20092925|ref|NP_619000.1| - 0.021 14.7 0.1 0.067 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|20092925|ref|NP_619000.1| - 0.023 14.7 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|20092925|ref|NP_619000.1| - 0.024 14.2 0.1 0.064 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|20092925|ref|NP_619000.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20092925|ref|NP_619000.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_28 PF13518.6 gi|20092925|ref|NP_619000.1| - 0.16 12.1 0.0 0.5 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain IstB_IS21 PF01695.17 gi|20092926|ref|NP_619001.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20092926|ref|NP_619001.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20092926|ref|NP_619001.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20092926|ref|NP_619001.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20092926|ref|NP_619001.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20092926|ref|NP_619001.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20092926|ref|NP_619001.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20092926|ref|NP_619001.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20092926|ref|NP_619001.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20092926|ref|NP_619001.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20092926|ref|NP_619001.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20092926|ref|NP_619001.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20092926|ref|NP_619001.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20092926|ref|NP_619001.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20092926|ref|NP_619001.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20092926|ref|NP_619001.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20092926|ref|NP_619001.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20092926|ref|NP_619001.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20092926|ref|NP_619001.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family MULE PF10551.9 gi|20092928|ref|NP_619003.1| - 6.1e-07 29.8 0.0 1.5e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain ADK_lid PF05191.14 gi|20092928|ref|NP_619003.1| - 0.017 15.1 0.5 5 7.2 0.3 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF659 PF04937.15 gi|20092928|ref|NP_619003.1| - 0.019 14.9 0.2 0.059 13.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) LOH1CR12 PF10158.9 gi|20092928|ref|NP_619003.1| - 0.023 14.7 0.1 0.063 13.3 0.1 1.8 1 0 0 1 1 1 0 Tumour suppressor protein CxC4 PF18717.1 gi|20092928|ref|NP_619003.1| - 0.04 13.8 1.1 0.093 12.6 0.4 2.0 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS91 PF14319.6 gi|20092928|ref|NP_619003.1| - 0.047 13.7 0.8 17 5.5 0.0 3.4 3 0 0 3 3 3 0 Transposase zinc-binding domain Transposase_mut PF00872.18 gi|20092928|ref|NP_619003.1| - 0.066 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family CxC3 PF18804.1 gi|20092928|ref|NP_619003.1| - 0.079 12.8 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases CxC5 PF18718.1 gi|20092928|ref|NP_619003.1| - 0.17 12.0 3.4 0.39 10.8 3.4 1.6 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Zn_ribbon_recom PF13408.6 gi|20092928|ref|NP_619003.1| - 0.25 11.9 4.8 0.49 10.9 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|20092928|ref|NP_619003.1| - 6.8 6.7 7.3 2.2 8.3 3.3 2.2 2 1 0 2 2 2 0 PHD-finger DUF927 PF06048.11 gi|20092930|ref|NP_619005.1| - 5.2e-81 272.4 0.2 7.6e-81 271.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF927) HHH_8 PF14716.6 gi|20092931|ref|NP_619006.1| - 0.0018 18.6 0.1 0.0027 18.1 0.1 1.4 1 1 0 1 1 1 1 Helix-hairpin-helix domain Peptidase_M54 PF07998.11 gi|20092933|ref|NP_619008.1| - 0.045 13.7 0.0 1.1 9.2 0.0 2.1 1 1 1 2 2 2 0 Peptidase family M54 CGGC PF08821.11 gi|20092934|ref|NP_619009.1| - 0.0033 17.6 0.1 0.0051 17.0 0.1 1.3 1 0 0 1 1 1 1 CGGC domain Zn_Tnp_IS1595 PF12760.7 gi|20092935|ref|NP_619010.1| - 0.0092 15.9 3.6 0.013 15.4 3.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|20092935|ref|NP_619010.1| - 0.068 13.3 4.5 0.1 12.7 4.5 1.3 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn_ribbon_SprT PF17283.2 gi|20092935|ref|NP_619010.1| - 0.33 10.9 5.2 0.52 10.3 5.2 1.2 1 0 0 1 1 1 0 SprT-like zinc ribbon domain SIKE PF05769.11 gi|20092936|ref|NP_619011.1| - 0.08 12.9 0.4 0.12 12.3 0.1 1.4 2 0 0 2 2 2 0 SIKE family Nif11 PF07862.11 gi|20092936|ref|NP_619011.1| - 0.17 12.2 0.0 0.42 11.0 0.0 1.7 2 0 0 2 2 2 0 Nif11 domain ADP_ribosyl_GH PF03747.14 gi|20092937|ref|NP_619012.1| - 2.8e-65 220.9 0.0 3.2e-65 220.8 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF123 PF01986.16 gi|20092938|ref|NP_619013.1| - 1.4e-30 105.6 0.0 1.8e-30 105.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.27 gi|20092940|ref|NP_619015.1| - 2.3e-08 34.3 0.1 5.4e-08 33.1 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ACT PF01842.25 gi|20092940|ref|NP_619015.1| - 1.8e-07 30.8 0.0 8.6e-05 22.2 0.0 3.4 3 0 0 3 3 3 1 ACT domain Thr_dehydrat_C PF00585.18 gi|20092940|ref|NP_619015.1| - 0.0004 20.1 0.0 0.16 11.8 0.0 2.6 1 1 1 2 2 2 2 C-terminal regulatory domain of Threonine dehydratase Lactamase_B_2 PF12706.7 gi|20092940|ref|NP_619015.1| - 0.018 14.6 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain ACT_4 PF13291.6 gi|20092940|ref|NP_619015.1| - 0.051 14.2 0.0 19 5.9 0.0 2.6 2 0 0 2 2 2 0 ACT domain PAP2 PF01569.21 gi|20092941|ref|NP_619016.1| - 4.2e-17 62.2 10.9 4.2e-17 62.2 10.9 2.3 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|20092941|ref|NP_619016.1| - 1.7e-09 37.7 15.2 9.8e-08 31.9 15.2 2.0 1 1 0 1 1 1 1 PAP2 superfamily DUF212 PF02681.14 gi|20092941|ref|NP_619016.1| - 3.4e-05 24.0 0.5 0.0017 18.5 0.1 2.1 1 1 1 2 2 2 1 Divergent PAP2 family PAP2_C PF14360.6 gi|20092941|ref|NP_619016.1| - 0.00034 21.1 2.6 0.00034 21.1 2.6 2.2 2 1 0 2 2 2 1 PAP2 superfamily C-terminal Bax1-I PF01027.20 gi|20092941|ref|NP_619016.1| - 0.65 9.8 15.2 0.018 14.9 6.5 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 Peptidase_U4 PF03419.13 gi|20092941|ref|NP_619016.1| - 1.9 7.7 9.0 3 7.0 9.0 1.3 1 0 0 1 1 1 0 Sporulation factor SpoIIGA CcmE PF03100.15 gi|20092942|ref|NP_619017.1| - 2.9e-19 69.3 0.0 3.1e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 CcmE polyprenyl_synt PF00348.17 gi|20092943|ref|NP_619018.1| - 1.3e-47 162.0 0.0 1.6e-47 161.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Radical_SAM PF04055.21 gi|20092944|ref|NP_619019.1| - 1.3e-15 58.2 0.0 1.9e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|20092944|ref|NP_619019.1| - 5.8e-10 39.5 0.0 1.4e-09 38.3 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|20092944|ref|NP_619019.1| - 0.0046 17.2 0.0 0.0085 16.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain V-ATPase_G_2 PF16999.5 gi|20092945|ref|NP_619020.1| - 4.3e-08 33.5 15.6 5.1e-08 33.3 15.6 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G PF03179.15 gi|20092945|ref|NP_619020.1| - 9.1e-05 22.9 13.5 0.00012 22.6 13.5 1.2 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|20092945|ref|NP_619020.1| - 0.00046 20.3 19.3 0.0034 17.5 11.9 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HOIP-UBA PF16678.5 gi|20092945|ref|NP_619020.1| - 0.25 11.3 4.7 0.47 10.5 4.7 1.5 1 1 0 1 1 1 0 HOIP UBA domain pair DUF3043 PF11241.8 gi|20092945|ref|NP_619020.1| - 0.32 11.0 2.5 0.45 10.5 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) DUF883 PF05957.13 gi|20092945|ref|NP_619020.1| - 1 10.0 8.6 1.2 9.8 6.4 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FAM25 PF15825.5 gi|20092945|ref|NP_619020.1| - 4.3 7.7 8.2 2.5 8.5 0.6 2.8 1 1 2 3 3 3 0 FAM25 family LsmAD PF06741.13 gi|20092945|ref|NP_619020.1| - 8.5 7.0 8.3 3.1 8.4 5.0 2.0 1 1 1 2 2 2 0 LsmAD domain V_ATPase_I PF01496.19 gi|20092946|ref|NP_619021.1| - 5.1e-30 104.1 7.7 3.1e-19 68.5 0.0 3.2 3 1 0 4 4 4 2 V-type ATPase 116kDa subunit family Vps51 PF08700.11 gi|20092946|ref|NP_619021.1| - 0.0038 17.3 2.4 0.055 13.6 0.2 2.9 2 1 1 3 3 3 1 Vps51/Vps67 ATG16 PF08614.11 gi|20092946|ref|NP_619021.1| - 0.037 14.2 3.3 0.27 11.4 0.8 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|20092946|ref|NP_619021.1| - 0.038 12.9 3.2 0.16 10.8 0.6 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.6 gi|20092946|ref|NP_619021.1| - 0.046 14.1 3.3 0.54 10.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) MAP65_ASE1 PF03999.12 gi|20092946|ref|NP_619021.1| - 0.063 12.0 2.6 0.94 8.1 0.1 2.0 2 0 0 2 2 2 0 Microtubule associated protein (MAP65/ASE1 family) DUF1351 PF07083.11 gi|20092946|ref|NP_619021.1| - 0.064 13.0 0.2 0.064 13.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1351) DHR10 PF18595.1 gi|20092946|ref|NP_619021.1| - 0.066 13.3 2.1 1.4 9.0 0.2 2.5 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain APG6_N PF17675.1 gi|20092946|ref|NP_619021.1| - 0.077 13.5 6.2 0.7 10.4 0.6 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region BLOC1_2 PF10046.9 gi|20092946|ref|NP_619021.1| - 0.086 13.2 5.3 1.7 9.0 0.3 2.7 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0242 PF06785.11 gi|20092946|ref|NP_619021.1| - 0.087 12.9 3.6 1.1 9.3 0.2 3.1 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF713 PF05218.14 gi|20092946|ref|NP_619021.1| - 0.1 12.4 1.0 0.18 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF713) PspA_IM30 PF04012.12 gi|20092946|ref|NP_619021.1| - 0.13 11.8 2.1 3.3 7.2 0.1 2.2 2 0 0 2 2 2 0 PspA/IM30 family SlyX PF04102.12 gi|20092946|ref|NP_619021.1| - 0.15 12.7 1.4 0.68 10.6 0.4 2.2 2 0 0 2 2 2 0 SlyX DUF4164 PF13747.6 gi|20092946|ref|NP_619021.1| - 0.16 12.3 4.5 0.1 12.9 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DivIC PF04977.15 gi|20092946|ref|NP_619021.1| - 0.17 11.7 7.7 4.3 7.2 2.4 2.6 2 0 0 2 2 2 0 Septum formation initiator DUF5082 PF16888.5 gi|20092946|ref|NP_619021.1| - 0.18 12.1 3.0 1.3 9.3 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) Fib_alpha PF08702.10 gi|20092946|ref|NP_619021.1| - 0.3 11.3 1.8 19 5.5 0.1 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Csm1_N PF18504.1 gi|20092946|ref|NP_619021.1| - 0.32 11.4 2.1 24 5.4 0.1 2.5 2 0 0 2 2 2 0 Csm1 N-terminal domain SKA1 PF07160.12 gi|20092946|ref|NP_619021.1| - 0.54 10.1 4.6 1.8 8.4 0.3 2.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 ZapB PF06005.12 gi|20092946|ref|NP_619021.1| - 0.56 10.7 7.2 5.4 7.5 1.3 2.5 2 0 0 2 2 2 0 Cell division protein ZapB DUF3450 PF11932.8 gi|20092946|ref|NP_619021.1| - 0.59 9.4 3.0 0.93 8.7 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Bacillus_HBL PF05791.11 gi|20092946|ref|NP_619021.1| - 0.65 9.8 2.8 2 8.2 0.5 2.2 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) CLZ PF16526.5 gi|20092946|ref|NP_619021.1| - 0.7 10.3 2.8 2.3 8.7 0.1 2.4 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spc24 PF08286.11 gi|20092946|ref|NP_619021.1| - 0.95 9.7 3.0 13 6.0 0.1 2.6 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 ABC_tran_CTD PF16326.5 gi|20092946|ref|NP_619021.1| - 1.2 9.4 7.6 7.3 6.9 1.7 2.8 2 0 0 2 2 2 0 ABC transporter C-terminal domain Prefoldin_2 PF01920.20 gi|20092946|ref|NP_619021.1| - 1.5 8.8 8.8 2.5 8.1 1.3 2.5 2 0 0 2 2 2 0 Prefoldin subunit TolA_bind_tri PF16331.5 gi|20092946|ref|NP_619021.1| - 1.8 8.7 4.6 5.6 7.1 1.4 2.3 2 0 0 2 2 2 0 TolA binding protein trimerisation XhlA PF10779.9 gi|20092946|ref|NP_619021.1| - 2.2 8.5 7.0 8.6 6.7 0.4 2.9 2 0 0 2 2 2 0 Haemolysin XhlA Prefoldin PF02996.17 gi|20092946|ref|NP_619021.1| - 2.4 8.1 6.4 8.2 6.4 0.6 2.6 2 0 0 2 2 2 0 Prefoldin subunit DUF4140 PF13600.6 gi|20092946|ref|NP_619021.1| - 4.9 7.7 5.1 11 6.5 0.5 2.6 3 0 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) CENP-F_leu_zip PF10473.9 gi|20092946|ref|NP_619021.1| - 4.9 7.2 7.4 8.2 6.4 0.2 3.0 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATP-synt_C PF00137.21 gi|20092947|ref|NP_619022.1| - 1.1e-15 57.7 8.7 1.3e-15 57.4 8.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|20092948|ref|NP_619023.1| - 1.5e-20 73.5 13.6 2.8e-10 39.9 0.1 2.0 1 1 1 2 2 2 2 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|20092948|ref|NP_619023.1| - 0.0074 16.7 6.3 0.0084 16.5 5.2 1.6 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit OmpH PF03938.14 gi|20092948|ref|NP_619023.1| - 0.02 15.2 9.0 0.033 14.5 9.0 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4047 PF13256.6 gi|20092948|ref|NP_619023.1| - 0.055 13.7 3.9 0.089 13.0 3.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) RPN6_N PF18055.1 gi|20092948|ref|NP_619023.1| - 0.11 12.8 5.7 0.18 12.2 5.7 1.4 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN6 N-terminal domain MLD PF11647.8 gi|20092948|ref|NP_619023.1| - 0.11 12.8 1.7 0.28 11.5 0.5 2.2 1 1 2 3 3 3 0 Membrane Localization Domain COG5 PF10392.9 gi|20092948|ref|NP_619023.1| - 0.58 10.3 7.3 1.3 9.2 7.2 1.6 1 1 0 1 1 1 0 Golgi transport complex subunit 5 RRF PF01765.19 gi|20092948|ref|NP_619023.1| - 0.72 9.8 11.3 0.68 9.9 6.2 2.2 1 1 1 2 2 2 0 Ribosome recycling factor vATP-synt_AC39 PF01992.16 gi|20092949|ref|NP_619024.1| - 7.7e-72 242.6 10.3 8.7e-72 242.4 10.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Darcynin PF17074.5 gi|20092949|ref|NP_619024.1| - 0.091 13.0 0.2 14 5.9 0.0 2.3 2 0 0 2 2 2 0 Darcynin, domain of unknown function ATP-synt_F PF01990.17 gi|20092950|ref|NP_619025.1| - 3.2e-14 53.0 0.1 3.5e-14 52.9 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|20092951|ref|NP_619026.1| - 8.9e-96 319.6 0.0 1.3e-95 319.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|20092951|ref|NP_619026.1| - 4e-41 139.7 0.0 7.5e-41 138.8 0.0 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|20092951|ref|NP_619026.1| - 6.4e-10 39.4 2.3 6.4e-10 39.4 2.3 2.4 4 0 0 4 4 4 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|20092951|ref|NP_619026.1| - 0.071 13.4 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|20092952|ref|NP_619027.1| - 2.9e-65 219.9 0.0 3.8e-65 219.5 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|20092952|ref|NP_619027.1| - 7e-14 52.1 1.8 7e-14 52.1 1.8 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|20092952|ref|NP_619027.1| - 0.0029 17.7 1.2 0.0053 16.9 0.6 1.8 2 0 0 2 2 2 1 HAS barrel domain DUF561 PF04481.12 gi|20092952|ref|NP_619027.1| - 0.017 14.3 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ATP-synt_D PF01813.17 gi|20092953|ref|NP_619028.1| - 9.4e-57 192.0 8.2 1.1e-56 191.8 8.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF5077 PF16871.5 gi|20092953|ref|NP_619028.1| - 0.03 14.2 0.1 0.056 13.3 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5077) HNOBA PF07701.14 gi|20092953|ref|NP_619028.1| - 0.1 12.0 0.7 0.21 11.0 0.3 1.7 2 0 0 2 2 2 0 Heme NO binding associated Ead_Ea22 PF13935.6 gi|20092953|ref|NP_619028.1| - 0.16 12.7 1.4 0.28 11.8 0.2 1.9 1 1 1 2 2 2 0 Ead/Ea22-like protein Sua5_yciO_yrdC PF01300.18 gi|20092954|ref|NP_619029.1| - 2.2e-41 141.3 0.0 3.4e-41 140.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|20092954|ref|NP_619029.1| - 3.9e-29 100.1 17.0 2.1e-14 53.0 4.2 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|20092954|ref|NP_619029.1| - 1.5e-23 83.4 0.5 3e-23 82.5 0.5 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|20092954|ref|NP_619029.1| - 1.6e-21 76.5 0.1 5e-21 74.9 0.0 1.8 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|20092954|ref|NP_619029.1| - 0.00011 22.1 0.0 0.00024 20.9 0.0 1.5 1 0 0 1 1 1 1 Glycoprotease family DZR PF12773.7 gi|20092954|ref|NP_619029.1| - 0.25 11.4 5.3 1.9 8.5 0.3 2.5 2 0 0 2 2 2 0 Double zinc ribbon NMD3 PF04981.13 gi|20092954|ref|NP_619029.1| - 1.4 8.3 5.6 2.4 7.6 0.3 2.3 1 1 1 2 2 2 0 NMD3 family LIM PF00412.22 gi|20092954|ref|NP_619029.1| - 2.7 8.3 5.7 60 4.0 2.8 2.7 1 1 1 2 2 2 0 LIM domain DUF1699 PF08004.11 gi|20092955|ref|NP_619030.1| - 1.6e-48 163.6 0.1 1.9e-48 163.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1870 PF08965.10 gi|20092955|ref|NP_619030.1| - 0.19 11.8 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1870) ATG16 PF08614.11 gi|20092956|ref|NP_619031.1| - 8.7e-11 42.4 58.0 0.00071 19.9 7.7 4.8 1 1 3 5 5 5 5 Autophagy protein 16 (ATG16) SlyX PF04102.12 gi|20092956|ref|NP_619031.1| - 1.3e-08 35.4 41.3 0.0042 17.7 0.2 7.5 1 1 5 7 7 7 4 SlyX Lebercilin PF15619.6 gi|20092956|ref|NP_619031.1| - 7.9e-08 32.2 60.2 0.0017 18.1 16.0 4.6 1 1 2 4 4 4 3 Ciliary protein causing Leber congenital amaurosis disease Fez1 PF06818.15 gi|20092956|ref|NP_619031.1| - 0.00019 22.0 59.8 1.7 9.0 2.5 5.1 1 1 3 4 4 4 4 Fez1 HOOK PF05622.12 gi|20092956|ref|NP_619031.1| - 0.00074 17.8 20.7 0.00074 17.8 20.7 3.5 1 1 3 4 4 4 3 HOOK protein PKcGMP_CC PF16808.5 gi|20092956|ref|NP_619031.1| - 0.00087 19.1 77.0 0.11 12.4 0.1 12.2 7 4 5 13 13 13 6 Coiled-coil N-terminus of cGMP-dependent protein kinase Cast PF10174.9 gi|20092956|ref|NP_619031.1| - 0.0019 16.5 64.0 0.025 12.8 35.4 2.4 1 1 1 2 2 2 1 RIM-binding protein of the cytomatrix active zone AAA_13 PF13166.6 gi|20092956|ref|NP_619031.1| - 0.0021 16.8 51.9 0.0071 15.1 15.5 3.2 1 1 1 2 2 2 1 AAA domain CEP209_CC5 PF16574.5 gi|20092956|ref|NP_619031.1| - 0.0064 16.7 1.1 0.0064 16.7 1.1 6.8 2 2 4 7 7 6 2 Coiled-coil region of centrosome protein CE290 Fib_alpha PF08702.10 gi|20092956|ref|NP_619031.1| - 0.023 14.9 43.1 0.044 14.0 1.8 5.7 1 1 5 6 6 6 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|20092956|ref|NP_619031.1| - 0.037 14.1 1.0 0.037 14.1 1.0 5.0 1 1 3 4 4 3 0 Laminin Domain II DUF4686 PF15742.5 gi|20092956|ref|NP_619031.1| - 0.047 12.8 61.0 0.21 10.7 4.5 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4686) ERM PF00769.19 gi|20092956|ref|NP_619031.1| - 0.066 13.0 70.2 0.025 14.4 16.5 4.6 1 1 2 4 4 4 0 Ezrin/radixin/moesin family DUF16 PF01519.16 gi|20092956|ref|NP_619031.1| - 0.35 11.4 51.6 0.66 10.5 6.9 6.1 1 1 5 6 6 6 0 Protein of unknown function DUF16 ADIP PF11559.8 gi|20092956|ref|NP_619031.1| - 0.74 9.9 57.6 0.51 10.4 0.8 6.4 1 1 4 6 6 6 0 Afadin- and alpha -actinin-Binding RP-C PF03428.13 gi|20092956|ref|NP_619031.1| - 5.6 6.6 17.9 0.57 9.8 2.2 4.2 3 1 1 4 4 4 0 Replication protein C N-terminal domain NPV_P10 PF05531.12 gi|20092956|ref|NP_619031.1| - 7.1 7.2 26.6 0.7 10.4 0.1 6.2 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF4201 PF13870.6 gi|20092956|ref|NP_619031.1| - 8.6 6.1 56.8 0.073 12.8 6.0 5.2 1 1 4 5 5 5 0 Domain of unknown function (DUF4201) HMMR_N PF15905.5 gi|20092956|ref|NP_619031.1| - 9.4 5.6 73.6 0.85 9.0 16.5 3.9 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor N-terminal B12-binding PF02310.19 gi|20092957|ref|NP_619032.1| - 4.8e-22 78.3 0.3 1e-21 77.2 0.3 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20092957|ref|NP_619032.1| - 9.2e-14 51.6 5.4 2.8e-12 46.9 0.1 2.6 1 1 1 2 2 2 2 B12 binding domain DUF1090 PF06476.12 gi|20092957|ref|NP_619032.1| - 0.072 13.2 0.4 0.11 12.6 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) CdiI_2 PF18593.1 gi|20092957|ref|NP_619032.1| - 0.1 13.3 0.2 9.8 6.9 0.5 2.4 2 0 0 2 2 2 0 CdiI immunity protein Histone_HNS PF00816.21 gi|20092957|ref|NP_619032.1| - 0.3 11.9 1.3 1.1 10.2 1.0 2.0 2 0 0 2 2 2 0 H-NS histone family URO-D PF01208.17 gi|20092958|ref|NP_619033.1| - 2.8e-72 243.8 0.3 3.2e-72 243.6 0.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MFS_1 PF07690.16 gi|20092959|ref|NP_619034.1| - 2.6e-47 161.5 72.5 7.2e-43 146.9 50.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1724 PF08350.10 gi|20092960|ref|NP_619035.1| - 5.4e-20 71.3 0.2 1.2e-19 70.1 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20092960|ref|NP_619035.1| - 9.1e-05 22.3 0.0 0.00021 21.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|20092960|ref|NP_619035.1| - 0.0011 18.8 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|20092960|ref|NP_619035.1| - 0.0048 16.7 0.1 0.011 15.5 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|20092960|ref|NP_619035.1| - 0.009 15.8 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|20092960|ref|NP_619035.1| - 0.012 15.6 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|20092960|ref|NP_619035.1| - 0.044 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|20092960|ref|NP_619035.1| - 0.053 14.0 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|20092960|ref|NP_619035.1| - 0.11 12.4 0.7 0.2 11.6 0.7 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit TFIIE_beta PF02186.15 gi|20092960|ref|NP_619035.1| - 0.18 12.1 1.6 2 8.8 0.1 3.1 3 1 0 3 3 3 0 TFIIE beta subunit core domain DUF5542 PF17696.1 gi|20092961|ref|NP_619036.1| - 0.033 14.3 0.0 0.036 14.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5542) Sec62 PF03839.16 gi|20092961|ref|NP_619036.1| - 0.47 9.9 2.2 0.29 10.6 0.7 1.4 1 1 0 1 1 1 0 Translocation protein Sec62 DUF1699 PF08004.11 gi|20092962|ref|NP_619037.1| - 1.2e-62 209.3 3.0 1.4e-62 209.2 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.14 gi|20092962|ref|NP_619037.1| - 0.0059 16.9 0.1 0.0094 16.2 0.1 1.3 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) PAM2 PF07145.15 gi|20092962|ref|NP_619037.1| - 0.096 12.4 0.3 12 5.8 0.1 2.4 2 0 0 2 2 2 0 Ataxin-2 C-terminal region Fer4_16 PF13484.6 gi|20092963|ref|NP_619038.1| - 2e-05 25.4 2.7 0.039 14.9 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|20092963|ref|NP_619038.1| - 3e-05 23.7 10.7 0.0002 21.0 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20092963|ref|NP_619038.1| - 3.4e-05 23.9 7.8 0.00014 21.9 8.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Flavodoxin_5 PF12724.7 gi|20092963|ref|NP_619038.1| - 5.6e-05 23.4 0.0 0.00011 22.5 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Fer4_8 PF13183.6 gi|20092963|ref|NP_619038.1| - 0.00028 21.3 1.7 0.026 14.9 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092963|ref|NP_619038.1| - 0.00032 21.2 4.9 0.0053 17.3 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092963|ref|NP_619038.1| - 0.00033 20.7 3.2 0.022 14.9 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20092963|ref|NP_619038.1| - 0.0027 17.8 10.1 0.015 15.4 10.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20092963|ref|NP_619038.1| - 0.004 17.3 1.4 0.0072 16.5 1.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20092963|ref|NP_619038.1| - 0.011 16.4 11.7 0.052 14.2 2.7 2.5 2 1 2 4 4 3 0 4Fe-4S dicluster domain Flavodoxin_1 PF00258.25 gi|20092963|ref|NP_619038.1| - 0.014 15.6 0.1 0.44 10.8 0.1 2.5 1 1 0 1 1 1 0 Flavodoxin Flavodoxin_2 PF02525.17 gi|20092963|ref|NP_619038.1| - 0.016 14.9 0.0 0.19 11.4 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin-like fold Fer4_2 PF12797.7 gi|20092963|ref|NP_619038.1| - 0.084 13.0 10.2 0.28 11.4 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain FMN_red PF03358.15 gi|20092963|ref|NP_619038.1| - 0.13 12.0 0.2 9.4 6.0 0.1 2.4 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.7 gi|20092963|ref|NP_619038.1| - 0.21 11.3 2.1 1.8 8.2 0.0 2.4 2 1 1 3 3 2 0 Flavodoxin Fer4_4 PF12800.7 gi|20092963|ref|NP_619038.1| - 0.23 12.1 12.2 3.9 8.2 4.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092963|ref|NP_619038.1| - 2 8.6 10.8 0.26 11.4 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20092963|ref|NP_619038.1| - 3.5 8.5 8.8 0.28 12.0 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF1699 PF08004.11 gi|20092964|ref|NP_619039.1| - 2.3e-59 198.7 0.1 2.7e-59 198.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4394 PF14339.6 gi|20092964|ref|NP_619039.1| - 0.036 13.4 0.0 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) DHHA1 PF02272.19 gi|20092965|ref|NP_619040.1| - 5.5e-06 26.9 0.0 9.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|20092965|ref|NP_619040.1| - 0.11 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 DHH family A2L_zn_ribbon PF08792.10 gi|20092966|ref|NP_619041.1| - 0.024 14.3 5.0 1.3 8.8 0.1 3.3 3 0 0 3 3 3 0 A2L zinc ribbon domain DZR PF12773.7 gi|20092966|ref|NP_619041.1| - 0.03 14.4 2.5 0.094 12.8 2.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|20092966|ref|NP_619041.1| - 0.04 13.6 4.1 3 7.6 0.0 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|20092966|ref|NP_619041.1| - 0.066 12.9 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-dskA_traR PF01258.17 gi|20092966|ref|NP_619041.1| - 0.095 12.7 4.8 4.2 7.4 0.1 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2HE PF16278.5 gi|20092966|ref|NP_619041.1| - 0.16 12.4 5.0 9.6 6.7 0.7 3.1 1 1 1 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger zf-CCHC_2 PF13696.6 gi|20092966|ref|NP_619041.1| - 0.21 11.4 4.8 2.1 8.2 0.1 2.5 2 0 0 2 2 2 0 Zinc knuckle zf_UBZ PF18439.1 gi|20092966|ref|NP_619041.1| - 0.26 10.9 0.1 0.26 10.9 0.1 2.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Fer4 PF00037.27 gi|20092967|ref|NP_619042.1| - 1.1e-53 177.0 86.6 1.4e-07 31.0 2.9 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092967|ref|NP_619042.1| - 4.5e-48 161.6 120.2 3.3e-10 40.4 10.8 5.7 2 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092967|ref|NP_619042.1| - 4.9e-34 117.1 55.5 1.7e-10 41.7 4.4 7.3 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20092967|ref|NP_619042.1| - 3.5e-30 103.9 117.8 1.8e-08 34.4 11.0 6.3 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20092967|ref|NP_619042.1| - 1e-29 102.4 62.4 1.3e-09 38.1 5.3 6.2 5 1 0 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20092967|ref|NP_619042.1| - 2.5e-29 100.1 87.6 1.4e-05 25.0 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092967|ref|NP_619042.1| - 3.4e-26 91.1 71.7 1.4e-07 31.5 11.3 6.4 3 3 4 7 7 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092967|ref|NP_619042.1| - 9e-22 77.4 52.8 1.4e-07 31.9 10.0 5.9 5 1 0 5 5 5 5 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20092967|ref|NP_619042.1| - 9.3e-22 77.3 55.3 8.9e-09 35.7 2.8 6.2 5 1 2 7 7 7 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092967|ref|NP_619042.1| - 8.7e-21 72.7 81.6 3.6e-06 26.7 2.2 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20092967|ref|NP_619042.1| - 1.7e-18 65.5 79.3 8.6e-05 22.7 3.3 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20092967|ref|NP_619042.1| - 8e-15 54.6 105.2 0.00068 20.4 5.4 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20092967|ref|NP_619042.1| - 2.2e-07 31.1 65.1 0.013 15.7 1.4 7.8 3 2 5 8 8 8 5 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20092967|ref|NP_619042.1| - 2.7e-07 31.3 66.3 0.021 15.6 0.4 8.0 4 2 5 9 9 9 5 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20092967|ref|NP_619042.1| - 9.1e-07 29.3 82.1 0.071 13.7 3.2 8.5 7 1 0 7 7 7 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|20092967|ref|NP_619042.1| - 3.6e-06 27.6 57.7 0.028 15.2 0.2 8.4 6 2 0 6 6 5 4 4Fe-4S single cluster domain Amidohydro_3 PF07969.11 gi|20092968|ref|NP_619043.1| - 1.1e-97 328.4 0.0 1.4e-97 328.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|20092968|ref|NP_619043.1| - 1.2e-08 34.6 0.0 0.00095 18.6 0.0 3.0 3 0 0 3 3 3 2 Amidohydrolase family GXGXG PF01493.19 gi|20092969|ref|NP_619044.1| - 3.6e-07 30.0 24.5 1.2e-06 28.3 22.9 2.7 1 1 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.21 gi|20092970|ref|NP_619045.1| - 2.6e-10 40.3 0.0 3.3e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|20092971|ref|NP_619046.1| - 1.9e-12 46.9 0.0 8.5e-12 44.7 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|20092971|ref|NP_619046.1| - 0.047 13.4 0.0 0.15 11.8 0.0 2.0 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF4969 PF16339.5 gi|20092972|ref|NP_619047.1| - 0.16 12.3 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) Methyltransf_31 PF13847.6 gi|20092973|ref|NP_619048.1| - 3.5e-19 69.1 0.0 5.1e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092973|ref|NP_619048.1| - 2.3e-16 60.1 0.0 2.9e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092973|ref|NP_619048.1| - 4.7e-15 56.0 0.0 7.5e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092973|ref|NP_619048.1| - 7.4e-15 55.4 0.0 1.2e-14 54.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092973|ref|NP_619048.1| - 2.9e-13 50.4 0.0 4.7e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20092973|ref|NP_619048.1| - 6.5e-10 38.8 0.0 9.6e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|20092973|ref|NP_619048.1| - 6.7e-05 22.6 0.0 9.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|20092973|ref|NP_619048.1| - 9.3e-05 22.0 0.0 0.0002 20.9 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_9 PF08003.11 gi|20092973|ref|NP_619048.1| - 0.00021 20.4 0.0 0.00026 20.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|20092973|ref|NP_619048.1| - 0.00033 20.1 0.0 0.00053 19.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.12 gi|20092973|ref|NP_619048.1| - 0.00037 19.7 0.0 0.00047 19.3 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase PCMT PF01135.19 gi|20092973|ref|NP_619048.1| - 0.00065 19.5 0.0 0.00086 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|20092973|ref|NP_619048.1| - 0.00086 18.9 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20092973|ref|NP_619048.1| - 0.001 18.5 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|20092973|ref|NP_619048.1| - 0.0018 17.7 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 gi|20092973|ref|NP_619048.1| - 0.0069 16.2 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TPMT PF05724.11 gi|20092973|ref|NP_619048.1| - 0.0096 15.6 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.12 gi|20092973|ref|NP_619048.1| - 0.042 13.5 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0146 PF03686.13 gi|20092973|ref|NP_619048.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) DUF3473 PF11959.8 gi|20092974|ref|NP_619049.1| - 7.3e-43 145.7 0.2 1.2e-42 145.0 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.21 gi|20092974|ref|NP_619049.1| - 5.5e-16 58.6 0.0 8.5e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2194 PF09960.9 gi|20092974|ref|NP_619049.1| - 0.011 14.1 0.0 0.014 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) DUF2334 PF10096.9 gi|20092974|ref|NP_619049.1| - 0.049 13.3 0.1 0.074 12.7 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) RVT_1 PF00078.27 gi|20092975|ref|NP_619050.1| - 1.6e-46 158.6 0.0 2.7e-46 157.9 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 gi|20092975|ref|NP_619050.1| - 4.1e-19 68.4 6.6 4.1e-19 68.4 6.6 2.1 2 0 0 2 2 2 1 Group II intron, maturase-specific domain RVT_1 PF00078.27 gi|20092976|ref|NP_619051.1| - 3.9e-28 98.5 0.0 5.4e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|20092976|ref|NP_619051.1| - 5.1e-14 52.3 0.1 8.8e-14 51.5 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_N PF13655.6 gi|20092977|ref|NP_619052.1| - 5.7e-30 103.4 3.1 1e-29 102.6 3.1 1.4 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_1 PF00078.27 gi|20092977|ref|NP_619052.1| - 2.2e-17 63.3 0.0 3.4e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) FliD_N PF02465.18 gi|20092977|ref|NP_619052.1| - 0.044 14.5 0.3 0.078 13.7 0.3 1.5 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus DUF5626 PF18540.1 gi|20092977|ref|NP_619052.1| - 0.071 13.6 0.8 0.13 12.8 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5626) rve PF00665.26 gi|20092978|ref|NP_619053.1| - 2.6e-10 40.5 0.0 4.9e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.6 gi|20092978|ref|NP_619053.1| - 0.00014 21.8 0.1 0.00043 20.2 0.1 1.8 1 1 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|20092978|ref|NP_619053.1| - 0.0014 17.7 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|20092978|ref|NP_619053.1| - 0.0021 17.8 0.5 0.0039 16.9 0.1 1.7 2 0 0 2 2 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|20092978|ref|NP_619053.1| - 0.0028 17.3 0.0 0.008 15.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|20092978|ref|NP_619053.1| - 0.0032 17.3 0.0 0.22 11.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|20092978|ref|NP_619053.1| - 0.0054 16.5 0.1 0.014 15.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|20092978|ref|NP_619053.1| - 0.0095 16.0 0.5 0.48 10.5 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|20092978|ref|NP_619053.1| - 0.012 15.5 0.1 0.029 14.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|20092978|ref|NP_619053.1| - 0.019 14.8 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|20092978|ref|NP_619053.1| - 0.021 14.6 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_1 PF13411.6 gi|20092978|ref|NP_619053.1| - 0.024 14.7 0.0 0.051 13.7 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_3 PF01381.22 gi|20092978|ref|NP_619053.1| - 0.029 14.4 0.2 0.19 11.8 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix DUF746 PF05344.11 gi|20092978|ref|NP_619053.1| - 0.029 14.2 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_36 PF13730.6 gi|20092978|ref|NP_619053.1| - 0.035 14.1 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|20092978|ref|NP_619053.1| - 0.042 14.0 0.1 0.12 12.5 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain DUF2312 PF10073.9 gi|20092978|ref|NP_619053.1| - 0.048 13.3 0.0 0.83 9.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_24 PF13412.6 gi|20092978|ref|NP_619053.1| - 0.12 11.9 0.0 0.32 10.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_NinH PF06322.11 gi|20092978|ref|NP_619053.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_AraC PF00165.23 gi|20092978|ref|NP_619053.1| - 0.14 12.3 0.0 0.41 10.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Methyltransf_25 PF13649.6 gi|20092979|ref|NP_619054.1| - 7.4e-17 61.9 0.0 1.3e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20092979|ref|NP_619054.1| - 6.7e-15 55.6 0.1 1.2e-14 54.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092979|ref|NP_619054.1| - 7.7e-15 55.3 0.0 1.2e-14 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092979|ref|NP_619054.1| - 1.7e-12 47.4 0.0 2.2e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092979|ref|NP_619054.1| - 7e-08 32.1 0.0 1.2e-07 31.3 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|20092979|ref|NP_619054.1| - 1e-07 31.7 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|20092979|ref|NP_619054.1| - 1.5e-07 31.4 0.0 1.9e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|20092979|ref|NP_619054.1| - 1.3e-06 28.0 0.0 1.8e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|20092979|ref|NP_619054.1| - 0.00027 20.1 0.0 0.00058 19.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|20092979|ref|NP_619054.1| - 0.00045 19.7 0.0 0.00072 19.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase NodS PF05401.11 gi|20092979|ref|NP_619054.1| - 0.00074 19.2 0.0 0.00096 18.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|20092979|ref|NP_619054.1| - 0.0031 16.9 0.0 0.0043 16.4 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|20092979|ref|NP_619054.1| - 0.03 14.3 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF98 PF01947.16 gi|20092980|ref|NP_619055.1| - 1.7e-21 76.7 0.0 2.4e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase UTRA PF07702.13 gi|20092980|ref|NP_619055.1| - 1.1e-06 28.6 0.2 1.5e-06 28.1 0.2 1.2 1 0 0 1 1 1 1 UTRA domain Chor_lyase PF04345.13 gi|20092980|ref|NP_619055.1| - 0.0023 17.6 0.0 0.0026 17.4 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase DUF5611 PF18446.1 gi|20092981|ref|NP_619056.1| - 5e-36 123.7 0.6 6.1e-36 123.4 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) Imm6 PF14434.6 gi|20092981|ref|NP_619056.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Immunity protein Imm6 DUF2553 PF10830.8 gi|20092981|ref|NP_619056.1| - 0.039 14.8 0.1 0.22 12.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2553) Putative_PNPOx PF01243.20 gi|20092982|ref|NP_619057.1| - 7.4e-14 51.7 0.0 9.6e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AIRS PF00586.24 gi|20092984|ref|NP_619059.1| - 2.6e-18 66.5 0.6 8.2e-18 64.9 1.0 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|20092984|ref|NP_619059.1| - 9e-16 58.4 0.0 1.7e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Fer4 PF00037.27 gi|20092985|ref|NP_619060.1| - 6.7e-18 63.7 19.1 2.1e-09 36.8 5.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20092985|ref|NP_619060.1| - 1.5e-13 50.2 19.3 9.3e-07 28.7 5.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20092985|ref|NP_619060.1| - 3.4e-13 50.0 23.8 5.3e-10 39.7 12.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20092985|ref|NP_619060.1| - 2.4e-12 46.1 14.4 2.1e-06 27.5 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20092985|ref|NP_619060.1| - 4.4e-12 45.9 25.2 3.3e-09 36.7 14.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20092985|ref|NP_619060.1| - 2.1e-11 43.8 10.1 2.7e-11 43.4 10.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20092985|ref|NP_619060.1| - 4.7e-10 39.2 12.2 8.4e-05 22.8 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20092985|ref|NP_619060.1| - 6e-10 39.1 12.2 7e-10 38.9 12.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20092985|ref|NP_619060.1| - 1.2e-09 38.9 10.8 7.5e-05 23.6 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|20092985|ref|NP_619060.1| - 2.3e-06 28.0 12.2 0.00079 19.8 12.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20092985|ref|NP_619060.1| - 7.7e-06 26.7 7.0 0.0051 17.6 1.3 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20092985|ref|NP_619060.1| - 1.8e-05 25.2 23.0 0.01 16.4 2.4 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20092985|ref|NP_619060.1| - 3.2e-05 24.6 4.9 3.2e-05 24.6 4.9 2.6 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|20092985|ref|NP_619060.1| - 6.7e-05 23.3 18.1 0.01 16.3 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|20092985|ref|NP_619060.1| - 8e-05 23.3 17.3 0.0067 17.3 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|20092985|ref|NP_619060.1| - 0.0049 17.0 4.6 0.0049 17.0 4.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20092985|ref|NP_619060.1| - 0.11 12.7 12.8 0.47 10.7 12.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|20092986|ref|NP_619061.1| - 1.7e-28 100.1 0.1 2.7e-28 99.4 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|20092986|ref|NP_619061.1| - 7.9e-06 26.0 0.3 2.5e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|20092986|ref|NP_619061.1| - 0.00041 20.6 0.0 0.00085 19.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|20092987|ref|NP_619062.1| - 5.7e-27 94.1 0.0 7.3e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|20092988|ref|NP_619063.1| - 1.1e-13 52.0 0.2 1.6e-13 51.4 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|20092988|ref|NP_619063.1| - 1.1e-07 32.0 1.1 3e-07 30.6 1.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|20092988|ref|NP_619063.1| - 4.2e-07 30.3 0.1 8.9e-07 29.3 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.12 gi|20092989|ref|NP_619064.1| - 7.6e-73 243.9 0.6 8.5e-73 243.7 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.13 gi|20092990|ref|NP_619065.1| - 5e-59 199.3 0.0 5.7e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|20092990|ref|NP_619065.1| - 1.3e-06 28.4 0.1 1.8e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|20092990|ref|NP_619065.1| - 0.00019 21.1 0.0 0.011 15.3 0.0 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|20092990|ref|NP_619065.1| - 0.00058 19.7 0.0 0.0043 16.8 0.0 1.9 2 0 0 2 2 2 1 PP-loop family Diphthami_syn_2 PF01902.17 gi|20092990|ref|NP_619065.1| - 0.2 11.1 0.6 2.8 7.4 0.1 2.4 2 1 1 3 3 3 0 Diphthamide synthase Metallophos_2 PF12850.7 gi|20092991|ref|NP_619066.1| - 4.8e-29 101.7 0.1 5.4e-29 101.5 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|20092991|ref|NP_619066.1| - 2.7e-09 37.8 0.5 1.1e-05 26.1 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|20092991|ref|NP_619066.1| - 0.05 12.9 0.3 3.1 7.0 0.1 2.3 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DGC PF08859.11 gi|20092992|ref|NP_619067.1| - 1.2e-23 83.3 0.0 1.5e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 DGC domain Metallophos_2 PF12850.7 gi|20092993|ref|NP_619068.1| - 8.3e-30 104.1 0.0 1.1e-29 103.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|20092993|ref|NP_619068.1| - 4.1e-13 50.3 0.0 5.8e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|20092993|ref|NP_619068.1| - 0.013 13.8 0.0 0.02 13.2 0.0 1.3 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase Metallophos_3 PF14582.6 gi|20092993|ref|NP_619068.1| - 0.017 14.5 0.0 0.37 10.1 0.0 2.1 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Hydantoinase_A PF01968.18 gi|20092994|ref|NP_619069.1| - 5.7e-33 114.4 0.2 1.2e-31 110.1 0.0 2.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20092994|ref|NP_619069.1| - 2.1e-30 105.7 2.1 4.1e-27 95.0 0.1 3.5 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20092994|ref|NP_619069.1| - 1.3e-06 27.3 0.7 0.021 13.4 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|20092994|ref|NP_619069.1| - 0.012 15.1 0.2 0.49 9.8 0.0 2.6 3 0 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|20092994|ref|NP_619069.1| - 0.15 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 ROK family Methyltransf_12 PF08242.12 gi|20092995|ref|NP_619070.1| - 8.4e-16 58.5 0.0 1.2e-15 58.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20092995|ref|NP_619070.1| - 2e-14 54.0 0.0 3.5e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20092995|ref|NP_619070.1| - 2.9e-09 36.9 0.0 3.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20092995|ref|NP_619070.1| - 3.9e-09 37.0 0.0 5.8e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20092995|ref|NP_619070.1| - 3.8e-07 30.1 0.0 4.5e-07 29.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20092995|ref|NP_619070.1| - 1e-05 25.0 0.0 1.7e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|20092995|ref|NP_619070.1| - 0.00013 21.4 0.0 0.00016 21.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|20092995|ref|NP_619070.1| - 0.019 14.3 0.0 0.023 14.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|20092995|ref|NP_619070.1| - 0.051 13.1 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain ABC2_membrane PF01061.24 gi|20092996|ref|NP_619071.1| - 5.4e-23 81.5 23.3 5.4e-23 81.5 23.3 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|20092996|ref|NP_619071.1| - 2.1e-09 37.0 31.9 2.1e-09 37.0 31.9 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|20092997|ref|NP_619072.1| - 3.2e-35 121.6 0.2 8e-35 120.3 0.1 1.7 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.6 gi|20092997|ref|NP_619072.1| - 1.1e-13 51.7 2.3 1.4e-13 51.3 0.4 2.3 3 0 0 3 3 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|20092997|ref|NP_619072.1| - 6.2e-12 45.9 0.2 5.9e-06 26.3 0.0 2.4 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20092997|ref|NP_619072.1| - 1.8e-06 28.0 0.8 0.018 14.8 0.1 3.0 2 1 1 3 3 3 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20092997|ref|NP_619072.1| - 0.00016 21.6 1.2 0.00034 20.6 0.1 2.1 3 1 0 3 3 3 1 RsgA GTPase AAA_23 PF13476.6 gi|20092997|ref|NP_619072.1| - 0.00057 20.4 6.5 0.0057 17.2 6.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20092997|ref|NP_619072.1| - 0.0019 17.9 0.0 0.0042 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|20092997|ref|NP_619072.1| - 0.0021 17.5 0.9 0.012 15.0 0.6 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|20092997|ref|NP_619072.1| - 0.0093 15.9 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|20092997|ref|NP_619072.1| - 0.01 16.1 0.8 0.033 14.5 0.7 1.9 1 1 1 2 2 2 0 AAA domain ACT_4 PF13291.6 gi|20092997|ref|NP_619072.1| - 0.025 15.1 0.7 0.33 11.6 0.0 2.5 2 0 0 2 2 2 0 ACT domain AAA_18 PF13238.6 gi|20092997|ref|NP_619072.1| - 0.025 15.1 0.4 0.42 11.2 0.4 2.3 1 1 0 1 1 1 0 AAA domain Spt5-NGN PF03439.13 gi|20092997|ref|NP_619072.1| - 0.053 13.4 0.0 0.21 11.5 0.0 2.1 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section AAA_16 PF13191.6 gi|20092997|ref|NP_619072.1| - 0.06 13.7 0.0 0.21 11.9 0.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain ILEI PF15711.5 gi|20092997|ref|NP_619072.1| - 0.13 12.7 0.0 2.3 8.8 0.0 2.9 1 1 1 2 2 2 0 Interleukin-like EMT inducer MMR_HSR1 PF01926.23 gi|20092997|ref|NP_619072.1| - 0.39 10.8 4.7 0.29 11.2 0.5 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase Ammonium_transp PF00909.21 gi|20092998|ref|NP_619073.1| - 1.2e-122 409.4 35.7 1.5e-122 409.1 35.7 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF373 PF04123.13 gi|20092998|ref|NP_619073.1| - 1.5 8.2 20.3 2.3 7.6 9.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DPM3 PF08285.11 gi|20092998|ref|NP_619073.1| - 3.5 7.9 5.8 6.2 7.1 2.4 2.9 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) P-II PF00543.22 gi|20092999|ref|NP_619074.1| - 5e-40 136.2 1.7 5.6e-40 136.1 1.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PBP5_C PF07943.13 gi|20092999|ref|NP_619074.1| - 0.0029 17.8 0.9 0.0042 17.3 0.9 1.2 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain DUF2007 PF09413.10 gi|20092999|ref|NP_619074.1| - 0.024 14.8 0.1 0.12 12.5 0.1 2.1 1 1 0 1 1 1 0 Putative prokaryotic signal transducing protein DUF3104 PF11302.8 gi|20093001|ref|NP_619076.1| - 0.032 14.0 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) DUF1059 PF06348.11 gi|20093003|ref|NP_619078.1| - 1.2e-10 41.5 3.0 1.5e-10 41.1 3.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF832 PF05734.11 gi|20093003|ref|NP_619078.1| - 0.019 14.4 0.2 0.02 14.4 0.2 1.0 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) Tugs PF17840.1 gi|20093003|ref|NP_619078.1| - 0.081 13.1 0.4 0.12 12.6 0.4 1.3 1 0 0 1 1 1 0 Tethering Ubl4a to BAGS domain Halogen_Hydrol PF10112.9 gi|20093003|ref|NP_619078.1| - 0.22 11.5 1.0 0.25 11.3 1.0 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein TspO_MBR PF03073.15 gi|20093004|ref|NP_619079.1| - 2e-46 157.4 20.4 2.3e-46 157.2 20.4 1.0 1 0 0 1 1 1 1 TspO/MBR family CcmF_C PF16327.5 gi|20093004|ref|NP_619079.1| - 0.024 13.9 4.5 0.034 13.5 4.5 1.2 1 0 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal SAYSvFN PF10260.9 gi|20093005|ref|NP_619080.1| - 0.11 12.5 2.7 0.14 12.1 2.7 1.2 1 0 0 1 1 1 0 Uncharacterized conserved domain (SAYSvFN) Gln-synt_C PF00120.24 gi|20093006|ref|NP_619081.1| - 2.1e-138 461.1 0.0 2.5e-138 460.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|20093006|ref|NP_619081.1| - 3.4e-29 100.4 0.1 1.2e-28 98.6 0.0 1.9 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|20093006|ref|NP_619081.1| - 9.6e-07 28.6 0.0 5.3e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain Bmp PF02608.14 gi|20093006|ref|NP_619081.1| - 0.12 11.4 0.1 0.19 10.6 0.1 1.2 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like GATase_6 PF13522.6 gi|20093007|ref|NP_619082.1| - 2.6e-11 43.8 0.0 7e-09 36.0 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|20093007|ref|NP_619082.1| - 6.9e-09 34.9 0.3 7e-07 28.3 0.3 2.2 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|20093007|ref|NP_619082.1| - 6.8e-06 26.0 0.0 0.15 12.0 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|20093008|ref|NP_619083.1| - 2.2e-136 454.8 0.0 2.9e-136 454.4 0.0 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|20093008|ref|NP_619083.1| - 6e-14 52.2 0.0 1.4e-06 28.0 0.0 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|20093008|ref|NP_619083.1| - 4.7e-10 39.0 6.3 7.4e-08 31.8 2.8 3.0 3 0 0 3 3 3 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|20093008|ref|NP_619083.1| - 1.1e-09 37.8 6.4 3.3e-07 29.6 6.4 2.9 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Fer4_10 PF13237.6 gi|20093008|ref|NP_619083.1| - 2.2e-09 37.3 15.0 2.7e-06 27.4 11.7 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093008|ref|NP_619083.1| - 2.6e-08 34.3 15.6 0.002 18.7 1.8 3.4 2 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20093008|ref|NP_619083.1| - 5.1e-08 33.0 15.0 6.9e-07 29.3 10.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20093008|ref|NP_619083.1| - 1.8e-07 31.0 22.7 3.3e-05 23.8 2.3 3.3 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4 PF00037.27 gi|20093008|ref|NP_619083.1| - 6e-07 29.0 23.2 2.6e-05 23.9 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain NMO PF03060.15 gi|20093008|ref|NP_619083.1| - 9.4e-07 28.5 6.6 2.1e-06 27.4 6.6 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase Fer4_16 PF13484.6 gi|20093008|ref|NP_619083.1| - 1.6e-06 29.0 10.4 0.00057 20.8 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|20093008|ref|NP_619083.1| - 1.8e-06 28.0 8.5 1.8e-06 28.0 8.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093008|ref|NP_619083.1| - 1.6e-05 25.4 7.9 0.14 12.7 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20093008|ref|NP_619083.1| - 4.1e-05 23.4 21.5 0.013 15.6 2.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|20093008|ref|NP_619083.1| - 8.9e-05 21.8 0.5 0.0016 17.7 0.3 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_8 PF13183.6 gi|20093008|ref|NP_619083.1| - 0.00016 22.0 13.7 0.3 11.6 1.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|20093008|ref|NP_619083.1| - 0.0022 17.5 0.2 0.0043 16.5 0.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_18 PF13746.6 gi|20093008|ref|NP_619083.1| - 0.014 15.6 5.0 0.014 15.6 5.0 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20093008|ref|NP_619083.1| - 0.17 12.7 12.9 0.22 12.3 1.8 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|20093008|ref|NP_619083.1| - 0.86 10.5 15.4 0.25 12.2 1.0 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20093008|ref|NP_619083.1| - 3.6 8.2 21.6 0.21 12.1 1.5 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I GXGXG PF01493.19 gi|20093009|ref|NP_619084.1| - 1.8e-34 119.0 10.6 2.2e-34 118.7 10.6 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|20093010|ref|NP_619085.1| - 3.3e-34 118.0 0.0 5e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|20093010|ref|NP_619085.1| - 1.8e-18 66.4 0.1 3.5e-18 65.5 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_6 PF12837.7 gi|20093010|ref|NP_619085.1| - 8e-09 35.2 11.3 1.4e-06 28.1 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20093010|ref|NP_619085.1| - 3.9e-08 32.8 2.7 3.9e-08 32.8 2.7 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20093010|ref|NP_619085.1| - 1e-06 28.8 8.7 1e-06 28.8 8.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093010|ref|NP_619085.1| - 1.3e-05 25.7 9.4 1.3e-05 25.7 9.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20093010|ref|NP_619085.1| - 5.5e-05 23.3 20.3 0.0006 19.9 10.5 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20093010|ref|NP_619085.1| - 0.00012 22.3 13.5 0.0014 19.0 0.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20093010|ref|NP_619085.1| - 0.00013 21.8 2.4 0.00013 21.8 2.4 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20093010|ref|NP_619085.1| - 0.0019 18.7 6.7 0.025 15.1 0.3 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20093010|ref|NP_619085.1| - 0.0025 18.7 13.9 0.34 11.9 12.3 3.0 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|20093010|ref|NP_619085.1| - 0.005 17.3 8.2 0.18 12.2 2.4 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20093010|ref|NP_619085.1| - 0.0085 17.0 19.5 0.1 13.6 7.6 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|20093010|ref|NP_619085.1| - 0.014 16.1 1.2 0.38 11.5 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|20093010|ref|NP_619085.1| - 0.023 14.9 3.6 0.64 10.2 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF1344 PF07076.11 gi|20093010|ref|NP_619085.1| - 0.03 14.2 0.0 0.062 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) Fer4_13 PF13370.6 gi|20093010|ref|NP_619085.1| - 0.061 13.9 6.8 0.51 10.9 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF553 PF04473.12 gi|20093010|ref|NP_619085.1| - 0.18 11.3 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase-like domain Fer4_22 PF17179.4 gi|20093010|ref|NP_619085.1| - 0.19 12.6 5.3 0.28 12.1 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20093010|ref|NP_619085.1| - 1.1 9.5 17.0 0.11 12.7 3.2 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain NosD PF05048.13 gi|20093012|ref|NP_619087.1| - 2.5e-28 99.0 69.1 9.8e-15 54.5 41.2 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20093012|ref|NP_619087.1| - 3.8e-25 88.6 68.3 4.5e-13 49.3 22.8 3.1 1 1 2 3 3 3 3 Right handed beta helix region Pectinesterase PF01095.19 gi|20093012|ref|NP_619087.1| - 0.0087 14.8 0.8 0.017 13.9 0.8 1.4 1 0 0 1 1 1 1 Pectinesterase UPF0228 PF05727.11 gi|20093013|ref|NP_619088.1| - 2.8e-46 156.4 7.9 2.8e-46 156.4 5.0 1.9 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0228) VirB8 PF04335.13 gi|20093013|ref|NP_619088.1| - 0.062 13.1 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 VirB8 protein YscJ_FliF PF01514.17 gi|20093013|ref|NP_619088.1| - 0.076 12.7 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family DDE_Tnp_IS1 PF03400.13 gi|20093014|ref|NP_619089.1| - 8.3e-14 52.0 0.3 9.3e-14 51.9 0.3 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|20093015|ref|NP_619090.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|20093015|ref|NP_619090.1| - 3.3e-06 26.9 0.0 4.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|20093015|ref|NP_619090.1| - 0.00012 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|20093015|ref|NP_619090.1| - 0.002 17.8 0.1 0.0069 16.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|20093015|ref|NP_619090.1| - 0.0065 16.2 8.6 0.01 15.5 8.6 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.12 gi|20093015|ref|NP_619090.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|20093015|ref|NP_619090.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TnsD PF15978.5 gi|20093015|ref|NP_619090.1| - 0.02 13.9 0.1 0.036 13.0 0.1 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D zf-Mss51 PF13824.6 gi|20093015|ref|NP_619090.1| - 0.043 13.9 3.4 0.089 12.9 3.4 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|20093015|ref|NP_619090.1| - 0.057 13.6 1.8 1.2 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|20093015|ref|NP_619090.1| - 0.066 13.2 6.8 0.1 12.6 6.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|20093015|ref|NP_619090.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.20 gi|20093015|ref|NP_619090.1| - 2.3 8.3 5.1 2.3 8.3 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin VSG_B PF13206.6 gi|20093016|ref|NP_619091.1| - 0.0069 15.7 0.6 0.63 9.2 0.0 2.1 1 1 1 2 2 2 2 Trypanosomal VSG domain GST_N_2 PF13409.6 gi|20093016|ref|NP_619091.1| - 0.13 12.6 0.0 0.37 11.1 0.0 1.8 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain DDE_Tnp_1_6 PF13751.6 gi|20093017|ref|NP_619092.1| - 2.7e-28 98.7 4.5 8e-28 97.2 3.2 2.3 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|20093017|ref|NP_619092.1| - 1.2e-19 70.8 0.8 3.2e-19 69.4 0.8 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|20093017|ref|NP_619092.1| - 9.9e-16 57.5 0.0 2.6e-15 56.2 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|20093017|ref|NP_619092.1| - 0.0098 16.2 0.2 1.5 9.3 0.0 3.0 3 0 0 3 3 3 1 Transposase DDE domain AhpC-TSA PF00578.21 gi|20093017|ref|NP_619092.1| - 0.06 13.3 0.4 0.12 12.3 0.4 1.5 1 0 0 1 1 1 0 AhpC/TSA family RE_XamI PF09572.10 gi|20093017|ref|NP_619092.1| - 0.077 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 XamI restriction endonuclease RVT_N PF13655.6 gi|20093018|ref|NP_619093.1| - 6.6e-31 106.4 4.6 1.1e-30 105.7 4.6 1.4 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_1 PF00078.27 gi|20093018|ref|NP_619093.1| - 5.9e-25 88.1 0.0 9e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) MipZ PF09140.11 gi|20093018|ref|NP_619093.1| - 0.16 11.2 1.0 0.24 10.7 1.0 1.2 1 0 0 1 1 1 0 ATPase MipZ VEGFR-2_TMD PF17988.1 gi|20093019|ref|NP_619094.1| - 0.19 11.2 0.1 0.19 11.2 0.1 2.9 3 0 0 3 3 3 0 VEGFR-2 Transmembrane domain PHO4 PF01384.20 gi|20093019|ref|NP_619094.1| - 0.47 9.4 5.5 0.088 11.8 1.4 1.6 1 1 1 2 2 2 0 Phosphate transporter family Gly-zipper_YMGG PF13441.6 gi|20093020|ref|NP_619095.1| - 0.0021 17.8 15.3 0.0038 16.9 15.3 1.3 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|20093020|ref|NP_619095.1| - 0.01 15.8 16.7 0.018 15.0 16.7 1.4 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.15 gi|20093020|ref|NP_619095.1| - 1.3 8.9 18.0 2.8 7.9 18.0 1.5 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.6 gi|20093020|ref|NP_619095.1| - 3 7.7 18.5 5.6 6.8 18.5 1.3 1 0 0 1 1 1 0 Glycine-zipper domain DUF1269 PF06897.12 gi|20093020|ref|NP_619095.1| - 4.3 7.7 8.6 9.6 6.6 7.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) End_N_terminal PF12218.8 gi|20093021|ref|NP_619096.1| - 0.033 13.9 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase Peptidase_M24 PF00557.24 gi|20093022|ref|NP_619097.1| - 1.7e-39 135.7 0.0 2.2e-39 135.3 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|20093022|ref|NP_619097.1| - 5.7e-10 39.9 0.0 9e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CNP_C_terminal PF17839.1 gi|20093022|ref|NP_619097.1| - 0.074 13.8 0.0 0.14 12.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain of cyclic nucleotide phosphodiesterase DUF2284 PF10050.9 gi|20093023|ref|NP_619098.1| - 1.6e-41 141.8 1.2 1.8e-41 141.6 1.2 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Peptidase_S8 PF00082.22 gi|20093024|ref|NP_619099.1| - 3e-18 66.1 2.5 8e-15 54.9 0.1 2.4 3 0 0 3 3 3 2 Subtilase family Aegerolysin PF06355.13 gi|20093024|ref|NP_619099.1| - 0.03 14.4 0.1 0.088 12.9 0.1 1.8 1 0 0 1 1 1 0 Aegerolysin F420_oxidored PF03807.17 gi|20093025|ref|NP_619100.1| - 7.2e-15 55.4 0.1 1.4e-14 54.4 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Ldh_1_N PF00056.23 gi|20093025|ref|NP_619100.1| - 0.0034 17.5 0.3 0.0062 16.6 0.3 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|20093025|ref|NP_619100.1| - 0.0086 16.1 0.3 0.02 15.0 0.1 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DXP_reductoisom PF02670.16 gi|20093025|ref|NP_619100.1| - 0.48 11.2 2.5 20 5.9 0.0 2.7 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Fer4_8 PF13183.6 gi|20093026|ref|NP_619101.1| - 7e-13 48.8 6.0 1.4e-12 47.9 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093026|ref|NP_619101.1| - 4.2e-09 36.8 6.8 6.7e-09 36.2 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20093026|ref|NP_619101.1| - 4.7e-09 36.3 7.2 9.6e-09 35.3 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093026|ref|NP_619101.1| - 4.6e-08 33.5 7.7 6.2e-08 33.1 6.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20093026|ref|NP_619101.1| - 7.3e-08 32.4 7.8 1.8e-07 31.2 7.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20093026|ref|NP_619101.1| - 1.2e-05 25.1 9.7 0.0014 18.6 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20093026|ref|NP_619101.1| - 6.6e-05 23.0 4.3 0.00013 22.0 4.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20093026|ref|NP_619101.1| - 9.6e-05 22.0 11.3 0.012 15.4 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20093026|ref|NP_619101.1| - 0.0018 18.6 8.3 0.022 15.2 1.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20093026|ref|NP_619101.1| - 0.015 16.2 11.6 0.17 12.8 11.6 2.3 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|20093026|ref|NP_619101.1| - 0.022 15.7 17.2 0.15 13.1 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20093026|ref|NP_619101.1| - 0.15 12.2 9.2 0.69 10.1 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF5316 PF17247.2 gi|20093026|ref|NP_619101.1| - 0.15 12.0 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5316) Fer4_15 PF13459.6 gi|20093026|ref|NP_619101.1| - 0.56 11.0 6.5 1.2 9.9 1.5 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|20093026|ref|NP_619101.1| - 1.4 9.2 8.3 1.2 9.3 0.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20093026|ref|NP_619101.1| - 2.6 9.0 12.0 6.1 7.8 1.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain CCG PF02754.16 gi|20093027|ref|NP_619102.1| - 7.3e-34 115.8 3.5 6.3e-19 68.0 1.4 2.3 2 0 0 2 2 2 2 Cysteine-rich domain DUF1284 PF06935.11 gi|20093028|ref|NP_619103.1| - 1.3e-24 86.5 0.4 1.9e-24 86.0 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) Whib PF02467.16 gi|20093028|ref|NP_619103.1| - 0.0006 20.4 2.3 0.52 10.9 0.1 2.4 2 0 0 2 2 2 2 Transcription factor WhiB DUF5318 PF17249.2 gi|20093028|ref|NP_619103.1| - 0.059 13.1 0.5 0.089 12.6 0.5 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5318) DUF1847 PF08901.11 gi|20093029|ref|NP_619104.1| - 1.7e-40 138.3 0.2 2e-40 138.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) DUF169 PF02596.15 gi|20093030|ref|NP_619105.1| - 5.7e-58 196.2 0.0 6.5e-58 196.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 CbiA PF01656.23 gi|20093031|ref|NP_619106.1| - 1.2e-15 57.7 0.0 1.6e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20093031|ref|NP_619106.1| - 1.3e-10 41.2 0.4 0.00028 20.4 0.1 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|20093031|ref|NP_619106.1| - 1.7e-07 30.7 23.8 9.1e-07 28.4 1.4 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20093031|ref|NP_619106.1| - 3.7e-07 29.9 11.4 0.0032 17.5 1.1 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|20093031|ref|NP_619106.1| - 8.4e-07 28.7 16.3 0.00067 19.6 2.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|20093031|ref|NP_619106.1| - 1.6e-06 28.2 0.0 0.034 14.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|20093031|ref|NP_619106.1| - 2.3e-06 27.3 1.0 0.00015 21.3 0.0 2.4 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_7 PF12838.7 gi|20093031|ref|NP_619106.1| - 3.8e-06 27.4 9.7 0.016 15.8 1.7 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20093031|ref|NP_619106.1| - 0.00018 22.4 9.9 0.12 13.3 1.2 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|20093031|ref|NP_619106.1| - 0.00062 19.8 14.4 0.0073 16.4 13.5 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain CBP_BcsQ PF06564.12 gi|20093031|ref|NP_619106.1| - 0.00085 18.9 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Herpeto_peptide PF14409.6 gi|20093031|ref|NP_619106.1| - 0.0027 17.9 0.0 0.0098 16.1 0.0 1.9 1 0 0 1 1 1 1 Ribosomally synthesized peptide in Herpetosiphon Fer4_9 PF13187.6 gi|20093031|ref|NP_619106.1| - 0.003 17.7 14.8 0.025 14.8 13.5 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|20093031|ref|NP_619106.1| - 0.0055 17.1 0.0 0.048 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|20093031|ref|NP_619106.1| - 0.015 15.2 0.1 3.3 7.6 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase ArsA_ATPase PF02374.15 gi|20093031|ref|NP_619106.1| - 0.026 13.7 0.6 0.054 12.7 0.6 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|20093031|ref|NP_619106.1| - 0.039 13.5 0.3 0.6 9.7 0.3 2.2 2 0 0 2 2 2 0 AAA domain FTHFS PF01268.19 gi|20093031|ref|NP_619106.1| - 0.067 11.4 0.0 0.093 10.9 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Fer4_15 PF13459.6 gi|20093031|ref|NP_619106.1| - 0.075 13.8 10.0 1.2 10.0 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|20093031|ref|NP_619106.1| - 0.093 12.9 20.5 0.16 12.1 3.9 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093031|ref|NP_619106.1| - 0.12 12.9 12.8 1.1 9.9 2.1 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain ABC_tran PF00005.27 gi|20093031|ref|NP_619106.1| - 0.18 12.3 0.2 0.37 11.3 0.2 1.5 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|20093031|ref|NP_619106.1| - 0.2 11.6 0.0 0.4 10.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Fer4_8 PF13183.6 gi|20093031|ref|NP_619106.1| - 0.29 11.6 15.3 0.91 10.0 2.1 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20093031|ref|NP_619106.1| - 0.35 11.5 19.3 1.1 10.0 3.0 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|20093031|ref|NP_619106.1| - 0.79 10.6 11.7 4.4 8.2 3.0 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20093031|ref|NP_619106.1| - 1.9 9.1 13.9 1.5 9.4 2.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|20093032|ref|NP_619107.1| - 6.1e-16 58.6 0.0 8.7e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|20093032|ref|NP_619107.1| - 1.5e-13 50.7 0.0 1.5e-08 34.4 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|20093032|ref|NP_619107.1| - 1.1e-09 37.7 10.7 9.2e-06 25.3 1.6 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20093032|ref|NP_619107.1| - 9.6e-09 34.9 9.1 3.1e-05 23.8 0.7 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|20093032|ref|NP_619107.1| - 1.1e-08 35.5 3.1 0.012 16.1 0.1 3.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20093032|ref|NP_619107.1| - 1e-06 28.8 4.8 3e-06 27.3 4.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|20093032|ref|NP_619107.1| - 1.8e-06 28.0 0.0 0.00023 21.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_16 PF13484.6 gi|20093032|ref|NP_619107.1| - 2e-05 25.4 10.0 0.0011 19.9 2.3 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20093032|ref|NP_619107.1| - 0.00014 22.0 9.2 0.00053 20.1 8.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20093032|ref|NP_619107.1| - 0.00028 20.9 14.3 0.0048 17.0 0.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|20093032|ref|NP_619107.1| - 0.0012 18.5 0.0 0.0037 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain Fer4_2 PF12797.7 gi|20093032|ref|NP_619107.1| - 0.0017 18.4 1.7 0.0017 18.4 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|20093032|ref|NP_619107.1| - 0.0052 16.0 0.4 0.0089 15.2 0.4 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|20093032|ref|NP_619107.1| - 0.01 15.7 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|20093032|ref|NP_619107.1| - 0.015 14.8 0.0 0.37 10.2 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|20093032|ref|NP_619107.1| - 0.045 13.0 0.0 0.064 12.5 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ Fer4_8 PF13183.6 gi|20093032|ref|NP_619107.1| - 0.048 14.1 10.4 0.15 12.5 0.0 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093032|ref|NP_619107.1| - 0.056 14.0 12.7 0.095 13.3 1.6 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain PhoH PF02562.16 gi|20093032|ref|NP_619107.1| - 0.096 12.1 0.2 0.16 11.4 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.9 gi|20093032|ref|NP_619107.1| - 0.14 11.4 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fer4_22 PF17179.4 gi|20093032|ref|NP_619107.1| - 1.9 9.4 8.8 2.3 9.1 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20093032|ref|NP_619107.1| - 7.8 7.3 8.8 3.4 8.5 0.8 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Nitro_FeMo-Co PF02579.17 gi|20093033|ref|NP_619108.1| - 1.5e-17 63.7 0.0 2.2e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|20093034|ref|NP_619109.1| - 1.2e-17 64.0 0.0 1.5e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF134 PF02001.16 gi|20093035|ref|NP_619110.1| - 4.4e-27 94.5 0.1 5e-27 94.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|20093035|ref|NP_619110.1| - 0.0015 18.3 0.1 0.0025 17.6 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|20093035|ref|NP_619110.1| - 0.002 17.8 0.1 0.003 17.2 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|20093035|ref|NP_619110.1| - 0.0053 16.7 0.3 0.0082 16.1 0.3 1.3 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|20093035|ref|NP_619110.1| - 0.048 13.2 0.3 0.083 12.4 0.3 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|20093035|ref|NP_619110.1| - 0.094 12.5 0.4 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain KORA PF16509.5 gi|20093035|ref|NP_619110.1| - 0.15 12.4 0.1 0.2 11.9 0.1 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor ParA PF10609.9 gi|20093036|ref|NP_619111.1| - 1.2e-95 319.6 0.0 1.4e-95 319.4 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|20093036|ref|NP_619111.1| - 5.6e-16 58.8 0.0 1.3e-15 57.6 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20093036|ref|NP_619111.1| - 2.6e-09 37.2 0.2 6.6e-08 32.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|20093036|ref|NP_619111.1| - 4.2e-07 29.5 0.0 1.1e-06 28.1 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|20093036|ref|NP_619111.1| - 5.2e-07 29.2 0.0 8.4e-07 28.5 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|20093036|ref|NP_619111.1| - 1.2e-06 28.2 0.1 9.2e-05 22.0 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|20093036|ref|NP_619111.1| - 0.00021 20.8 0.0 0.0025 17.3 0.0 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|20093036|ref|NP_619111.1| - 0.00027 20.6 0.0 0.00052 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|20093036|ref|NP_619111.1| - 0.0025 16.9 0.1 0.0039 16.2 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|20093036|ref|NP_619111.1| - 0.0047 16.7 0.0 0.0073 16.1 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|20093036|ref|NP_619111.1| - 0.007 16.3 0.2 0.015 15.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_26 PF13500.6 gi|20093036|ref|NP_619111.1| - 0.011 15.6 1.0 1.8 8.3 0.2 2.4 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|20093036|ref|NP_619111.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|20093036|ref|NP_619111.1| - 0.015 14.5 1.0 0.02 14.1 0.2 1.6 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.22 gi|20093036|ref|NP_619111.1| - 0.019 14.6 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|20093036|ref|NP_619111.1| - 0.048 14.0 0.1 2.7 8.4 0.1 2.2 2 0 0 2 2 2 0 RNA helicase Cytochrom_B559 PF00283.19 gi|20093036|ref|NP_619111.1| - 0.052 13.0 0.4 0.096 12.2 0.4 1.4 1 0 0 1 1 1 0 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits VirC1 PF07015.11 gi|20093036|ref|NP_619111.1| - 0.088 12.1 0.1 0.15 11.3 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein NACHT PF05729.12 gi|20093036|ref|NP_619111.1| - 0.26 11.2 0.5 0.43 10.5 0.5 1.3 1 0 0 1 1 1 0 NACHT domain SBP_bac_5 PF00496.22 gi|20093037|ref|NP_619112.1| - 6.4e-91 305.1 0.0 8.7e-91 304.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Nbs1_C PF08599.10 gi|20093037|ref|NP_619112.1| - 0.082 13.1 0.3 0.17 12.1 0.3 1.4 1 0 0 1 1 1 0 DNA damage repair protein Nbs1 Methyltransf_11 PF08241.12 gi|20093038|ref|NP_619113.1| - 1.5e-25 89.6 0.0 2.8e-25 88.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20093038|ref|NP_619113.1| - 1.3e-23 83.5 0.0 2.8e-23 82.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093038|ref|NP_619113.1| - 9.9e-21 74.1 0.0 1.7e-20 73.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093038|ref|NP_619113.1| - 3.2e-16 59.4 0.0 4.4e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20093038|ref|NP_619113.1| - 1.5e-13 50.9 0.0 2.6e-13 50.2 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093038|ref|NP_619113.1| - 1.2e-10 41.9 0.0 2e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20093038|ref|NP_619113.1| - 1.1e-07 31.6 0.0 1.9e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|20093038|ref|NP_619113.1| - 2.3e-06 27.5 0.0 3.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20093038|ref|NP_619113.1| - 2.9e-06 26.9 0.0 4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|20093038|ref|NP_619113.1| - 0.00016 21.3 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|20093038|ref|NP_619113.1| - 0.00022 21.3 0.0 0.00033 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|20093038|ref|NP_619113.1| - 0.00023 20.8 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|20093038|ref|NP_619113.1| - 0.00031 20.7 0.0 0.00051 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|20093038|ref|NP_619113.1| - 0.0017 17.5 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|20093038|ref|NP_619113.1| - 0.0069 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NodS PF05401.11 gi|20093038|ref|NP_619113.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) GidB PF02527.15 gi|20093038|ref|NP_619113.1| - 0.039 13.3 0.0 0.081 12.2 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G TehB PF03848.14 gi|20093038|ref|NP_619113.1| - 0.047 13.1 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB TPMT PF05724.11 gi|20093038|ref|NP_619113.1| - 0.069 12.8 0.0 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) 3HCDH_N PF02737.18 gi|20093038|ref|NP_619113.1| - 0.094 12.6 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_16 PF13484.6 gi|20093039|ref|NP_619114.1| - 1.4e-08 35.5 9.9 3e-08 34.5 9.9 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|20093039|ref|NP_619114.1| - 4.1e-06 27.3 8.6 8.5e-06 26.3 8.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20093039|ref|NP_619114.1| - 0.0001 22.3 12.4 0.0012 18.9 13.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20093039|ref|NP_619114.1| - 0.00017 21.3 17.2 0.00049 19.8 2.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20093039|ref|NP_619114.1| - 0.00079 19.4 13.9 0.005 16.8 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20093039|ref|NP_619114.1| - 0.005 17.0 12.3 0.18 12.0 12.7 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Sigma_reg_C PF13791.6 gi|20093039|ref|NP_619114.1| - 0.02 15.1 0.0 1.5 9.0 0.0 2.4 2 1 0 2 2 2 0 Sigma factor regulator C-terminal Fer4_8 PF13183.6 gi|20093039|ref|NP_619114.1| - 0.035 14.5 9.8 2.2 8.8 10.9 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20093039|ref|NP_619114.1| - 0.36 11.0 17.1 0.82 9.9 4.8 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20093039|ref|NP_619114.1| - 0.86 10.2 12.0 5.9 7.5 3.7 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|20093039|ref|NP_619114.1| - 5.4 8.2 15.6 10 7.4 5.6 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|20093039|ref|NP_619114.1| - 8 7.1 11.6 19 5.9 2.3 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I BPD_transp_1 PF00528.22 gi|20093040|ref|NP_619115.1| - 3.8e-49 166.9 8.1 3.8e-49 166.9 8.1 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1761 PF08570.10 gi|20093040|ref|NP_619115.1| - 0.063 13.5 0.2 0.063 13.5 0.2 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1761) Renin_r PF07850.14 gi|20093040|ref|NP_619115.1| - 1.7 9.3 3.7 1.1 9.9 0.3 2.4 3 0 0 3 3 3 0 Renin receptor-like protein BPD_transp_1 PF00528.22 gi|20093041|ref|NP_619116.1| - 2.4e-24 86.1 9.3 2.4e-24 86.1 9.3 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20093041|ref|NP_619116.1| - 3.6e-06 26.8 0.3 3.6e-06 26.8 0.3 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|20093042|ref|NP_619117.1| - 8.8e-24 84.6 0.0 1.2e-23 84.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20093042|ref|NP_619117.1| - 6.5e-14 52.2 0.2 1.2e-13 51.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|20093042|ref|NP_619117.1| - 2.5e-06 27.1 0.1 6.5e-06 25.7 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20093042|ref|NP_619117.1| - 3.1e-06 27.2 3.6 0.00085 19.2 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20093042|ref|NP_619117.1| - 0.012 15.9 0.4 0.041 14.2 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|20093042|ref|NP_619117.1| - 0.026 14.9 0.0 0.055 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|20093042|ref|NP_619117.1| - 0.047 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20093042|ref|NP_619117.1| - 0.068 13.7 0.1 0.1 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|20093042|ref|NP_619117.1| - 0.09 12.1 0.0 2.3 7.6 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|20093042|ref|NP_619117.1| - 0.13 10.9 0.0 6.5 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|20093042|ref|NP_619117.1| - 0.22 11.0 0.0 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|20093043|ref|NP_619118.1| - 5.2e-31 108.0 0.0 7e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20093043|ref|NP_619118.1| - 3.3e-11 43.6 0.1 5.7e-11 42.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|20093043|ref|NP_619118.1| - 3.5e-07 29.9 0.5 3.2e-06 26.8 0.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|20093043|ref|NP_619118.1| - 8.2e-05 22.5 0.1 0.36 10.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20093043|ref|NP_619118.1| - 0.00074 19.9 0.1 0.0014 19.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20093043|ref|NP_619118.1| - 0.00084 19.6 1.4 0.014 15.6 1.4 2.1 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|20093043|ref|NP_619118.1| - 0.0012 18.2 0.2 0.037 13.4 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA PF00004.29 gi|20093043|ref|NP_619118.1| - 0.045 14.2 1.0 0.9 10.0 1.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|20093043|ref|NP_619118.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|20093043|ref|NP_619118.1| - 0.081 12.6 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.15 gi|20093043|ref|NP_619118.1| - 0.088 12.7 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|20093043|ref|NP_619118.1| - 0.12 12.2 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Thioredoxin PF00085.20 gi|20093044|ref|NP_619119.1| - 1.7e-15 56.9 0.0 2.3e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|20093044|ref|NP_619119.1| - 0.00018 21.4 0.0 0.00021 21.2 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|20093044|ref|NP_619119.1| - 0.0016 18.6 0.0 0.0034 17.5 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_6 PF13848.6 gi|20093044|ref|NP_619119.1| - 0.0048 16.8 0.0 0.0069 16.3 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|20093044|ref|NP_619119.1| - 0.008 16.5 0.0 0.018 15.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|20093044|ref|NP_619119.1| - 0.018 15.1 0.1 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|20093044|ref|NP_619119.1| - 0.039 13.7 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin AhpC-TSA PF00578.21 gi|20093044|ref|NP_619119.1| - 0.054 13.4 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA family Thioredoxin_2 PF13098.6 gi|20093044|ref|NP_619119.1| - 0.066 13.7 0.0 0.13 12.8 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like domain FliC PF12445.8 gi|20093044|ref|NP_619119.1| - 0.068 13.5 0.2 0.17 12.2 0.0 1.6 2 0 0 2 2 2 0 Flagellin protein OST3_OST6 PF04756.13 gi|20093044|ref|NP_619119.1| - 0.08 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DIM1 PF02966.16 gi|20093044|ref|NP_619119.1| - 0.087 12.6 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Mitosis protein DIM1 DUF836 PF05768.14 gi|20093044|ref|NP_619119.1| - 0.12 12.8 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Redoxin PF08534.10 gi|20093044|ref|NP_619119.1| - 0.14 11.8 0.0 0.31 10.8 0.0 1.5 1 1 1 2 2 2 0 Redoxin DsbD PF02683.15 gi|20093045|ref|NP_619120.1| - 5.4e-34 118.0 25.4 1.3e-33 116.7 25.4 1.5 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|20093045|ref|NP_619120.1| - 2.1e-11 44.2 21.7 4.3e-11 43.1 21.6 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MerE PF05052.12 gi|20093045|ref|NP_619120.1| - 0.005 16.7 12.5 0.13 12.2 1.4 3.2 2 1 1 3 3 3 2 MerE protein DUF3169 PF11368.8 gi|20093045|ref|NP_619120.1| - 0.048 13.2 2.5 2.9 7.3 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) RST PF12174.8 gi|20093045|ref|NP_619120.1| - 0.16 11.9 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain Piezo_RRas_bdg PF12166.8 gi|20093046|ref|NP_619121.1| - 0.024 14.0 0.1 0.026 13.8 0.1 1.1 1 0 0 1 1 1 0 Piezo non-specific cation channel, R-Ras-binding domain CbiC PF02570.15 gi|20093048|ref|NP_619123.1| - 2.4e-61 206.9 0.8 2.9e-61 206.6 0.8 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|20093049|ref|NP_619124.1| - 5.3e-36 124.5 0.6 6.3e-36 124.3 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DAGK_cat PF00781.24 gi|20093049|ref|NP_619124.1| - 0.021 14.4 0.2 0.065 12.9 0.1 1.8 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain TP_methylase PF00590.20 gi|20093050|ref|NP_619125.1| - 1.2e-45 156.1 0.3 1.4e-45 155.9 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|20093050|ref|NP_619125.1| - 0.019 15.3 0.1 0.057 13.8 0.1 1.8 1 1 0 1 1 1 0 Radical SAM superfamily TP_methylase PF00590.20 gi|20093051|ref|NP_619126.1| - 6.3e-33 114.5 0.0 8.9e-33 114.0 0.0 1.3 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|20093052|ref|NP_619127.1| - 2e-10 40.7 0.1 2.2e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|20093052|ref|NP_619127.1| - 4.5e-10 39.7 0.1 6.3e-10 39.2 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20093052|ref|NP_619127.1| - 4.1e-08 33.8 0.1 1.1e-07 32.5 0.1 1.6 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|20093052|ref|NP_619127.1| - 2.3e-07 30.5 0.1 3.7e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|20093052|ref|NP_619127.1| - 4.2e-06 26.6 0.0 5.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|20093052|ref|NP_619127.1| - 1.2e-05 26.0 0.1 2e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|20093052|ref|NP_619127.1| - 2.3e-05 23.9 0.2 3.2e-05 23.5 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|20093052|ref|NP_619127.1| - 4e-05 23.1 0.2 5e-05 22.7 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|20093052|ref|NP_619127.1| - 4.1e-05 23.4 0.4 0.00024 20.9 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|20093052|ref|NP_619127.1| - 8.2e-05 22.0 0.0 8.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|20093052|ref|NP_619127.1| - 0.00032 20.2 0.0 0.00049 19.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|20093052|ref|NP_619127.1| - 0.00036 20.2 0.2 0.00057 19.6 0.2 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|20093052|ref|NP_619127.1| - 0.00071 20.2 0.0 0.0014 19.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|20093052|ref|NP_619127.1| - 0.001 18.8 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit DOT1 PF08123.13 gi|20093052|ref|NP_619127.1| - 0.0026 17.3 0.0 0.0057 16.2 0.0 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 GidB PF02527.15 gi|20093052|ref|NP_619127.1| - 0.0063 15.9 0.1 0.0079 15.5 0.1 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltr_RsmB-F PF01189.17 gi|20093052|ref|NP_619127.1| - 0.0064 16.2 0.0 0.011 15.4 0.0 1.5 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Met_10 PF02475.16 gi|20093052|ref|NP_619127.1| - 0.038 13.7 0.4 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|20093052|ref|NP_619127.1| - 0.044 13.4 0.1 0.064 12.8 0.1 1.4 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|20093052|ref|NP_619127.1| - 0.078 12.8 0.0 0.085 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|20093052|ref|NP_619127.1| - 0.17 11.9 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HMGL-like PF00682.19 gi|20093053|ref|NP_619128.1| - 3.7e-34 118.5 0.0 4.9e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.20 gi|20093054|ref|NP_619129.1| - 1.2e-83 281.2 0.0 1.5e-83 280.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_CG PF14542.6 gi|20093054|ref|NP_619129.1| - 0.059 13.5 0.0 0.5 10.5 0.0 2.2 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase TatD_DNase PF01026.21 gi|20093055|ref|NP_619130.1| - 2.7e-24 85.9 0.0 3.5e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase HTH_3 PF01381.22 gi|20093056|ref|NP_619131.1| - 8.3e-10 38.6 0.9 1.2e-09 38.1 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|20093056|ref|NP_619131.1| - 1.2e-07 31.7 1.2 1.8e-07 31.0 0.7 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|20093056|ref|NP_619131.1| - 1.3e-06 28.6 0.0 2.3e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|20093056|ref|NP_619131.1| - 4e-05 23.4 0.5 6.6e-05 22.7 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain POTRA_1 PF08478.10 gi|20093056|ref|NP_619131.1| - 0.053 13.8 0.4 0.1 12.9 0.4 1.6 1 0 0 1 1 1 0 POTRA domain, FtsQ-type HTH_37 PF13744.6 gi|20093056|ref|NP_619131.1| - 0.072 13.1 0.2 0.12 12.4 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|20093056|ref|NP_619131.1| - 0.078 13.3 2.3 0.18 12.2 2.3 1.6 1 0 0 1 1 1 0 Archaeal TRASH domain zinc-ribbons_6 PF07191.12 gi|20093056|ref|NP_619131.1| - 0.13 12.3 2.5 0.22 11.5 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbons AAA PF00004.29 gi|20093057|ref|NP_619132.1| - 3.5e-44 150.4 0.5 2.3e-43 147.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|20093057|ref|NP_619132.1| - 1.1e-14 53.9 0.6 3.2e-14 52.5 0.6 1.8 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|20093057|ref|NP_619132.1| - 1.3e-10 41.1 0.0 2.7e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|20093057|ref|NP_619132.1| - 3.2e-08 33.6 0.7 1.1e-07 31.9 0.2 2.2 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|20093057|ref|NP_619132.1| - 1.3e-06 28.9 0.4 0.00052 20.4 0.1 3.0 2 1 1 3 3 3 1 AAA ATPase domain DUF815 PF05673.13 gi|20093057|ref|NP_619132.1| - 2.3e-06 26.9 0.0 4.7e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|20093057|ref|NP_619132.1| - 1.1e-05 25.6 0.5 2.8e-05 24.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|20093057|ref|NP_619132.1| - 7e-05 22.4 0.0 0.00018 21.0 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain Filament PF00038.21 gi|20093057|ref|NP_619132.1| - 0.00015 21.4 1.4 0.00015 21.4 1.4 1.6 2 0 0 2 2 1 1 Intermediate filament protein AAA_18 PF13238.6 gi|20093057|ref|NP_619132.1| - 0.00015 22.3 0.6 0.0037 17.8 0.0 2.8 3 0 0 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|20093057|ref|NP_619132.1| - 0.00039 20.2 0.0 0.0011 18.8 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|20093057|ref|NP_619132.1| - 0.00053 20.3 2.8 0.051 13.9 0.1 3.0 2 1 1 3 3 3 1 AAA domain ATPase PF06745.13 gi|20093057|ref|NP_619132.1| - 0.0013 18.1 3.0 0.14 11.4 0.0 3.1 2 1 1 3 3 3 1 KaiC APG6_N PF17675.1 gi|20093057|ref|NP_619132.1| - 0.0015 19.1 2.4 0.0015 19.1 2.4 1.9 2 0 0 2 2 1 1 Apg6 coiled-coil region AAA_28 PF13521.6 gi|20093057|ref|NP_619132.1| - 0.0028 17.9 0.0 0.0061 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rab5-bind PF09311.11 gi|20093057|ref|NP_619132.1| - 0.0035 16.8 1.4 0.0072 15.8 1.4 1.5 1 0 0 1 1 1 1 Rabaptin-like protein AAA_33 PF13671.6 gi|20093057|ref|NP_619132.1| - 0.0054 16.9 0.1 0.012 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|20093057|ref|NP_619132.1| - 0.0067 16.3 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|20093057|ref|NP_619132.1| - 0.012 15.7 0.0 0.036 14.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain Phage_GP20 PF06810.11 gi|20093057|ref|NP_619132.1| - 0.022 14.6 1.9 0.6 9.9 0.0 2.5 2 0 0 2 2 2 0 Phage minor structural protein GP20 TIP49 PF06068.13 gi|20093057|ref|NP_619132.1| - 0.022 14.0 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain Sigma54_activat PF00158.26 gi|20093057|ref|NP_619132.1| - 0.024 14.3 0.1 0.5 10.1 0.0 2.5 2 1 0 2 2 2 0 Sigma-54 interaction domain Spc7 PF08317.11 gi|20093057|ref|NP_619132.1| - 0.024 13.5 2.7 0.037 12.9 0.8 2.2 3 0 0 3 3 3 0 Spc7 kinetochore protein IstB_IS21 PF01695.17 gi|20093057|ref|NP_619132.1| - 0.026 14.3 0.1 0.12 12.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein CEP63 PF17045.5 gi|20093057|ref|NP_619132.1| - 0.031 14.2 3.0 0.07 13.0 3.0 1.5 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa AAA_17 PF13207.6 gi|20093057|ref|NP_619132.1| - 0.036 14.5 0.9 0.15 12.5 0.1 2.5 2 1 0 2 2 2 0 AAA domain bZIP_2 PF07716.15 gi|20093057|ref|NP_619132.1| - 0.04 14.0 0.5 0.04 14.0 0.5 2.9 2 1 1 3 3 2 0 Basic region leucine zipper ATPase_2 PF01637.18 gi|20093057|ref|NP_619132.1| - 0.042 13.8 2.1 11 5.9 0.0 3.0 2 1 0 3 3 3 0 ATPase domain predominantly from Archaea ADIP PF11559.8 gi|20093057|ref|NP_619132.1| - 0.059 13.5 2.3 0.12 12.4 2.3 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Mg_chelatase PF01078.21 gi|20093057|ref|NP_619132.1| - 0.069 12.5 0.0 0.19 11.1 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TMF_TATA_bd PF12325.8 gi|20093057|ref|NP_619132.1| - 0.094 12.9 5.8 0.99 9.6 4.2 2.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3450 PF11932.8 gi|20093057|ref|NP_619132.1| - 0.13 11.5 3.4 0.39 10.0 3.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) AAA_13 PF13166.6 gi|20093057|ref|NP_619132.1| - 0.18 10.4 2.8 0.94 8.0 0.4 2.4 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|20093057|ref|NP_619132.1| - 0.27 11.8 1.2 4.4 7.8 0.0 2.7 3 1 0 3 3 2 0 ABC transporter Tektin PF03148.14 gi|20093057|ref|NP_619132.1| - 0.3 9.8 7.8 0.13 11.0 3.5 2.1 2 0 0 2 2 2 0 Tektin family DUF5082 PF16888.5 gi|20093057|ref|NP_619132.1| - 0.76 10.1 6.4 4.1 7.7 2.4 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) DUF724 PF05266.14 gi|20093057|ref|NP_619132.1| - 1.6 8.5 5.1 0.49 10.2 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) CENP-F_leu_zip PF10473.9 gi|20093057|ref|NP_619132.1| - 3.5 7.6 11.0 0.21 11.6 4.5 2.2 3 0 0 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ZapB PF06005.12 gi|20093057|ref|NP_619132.1| - 5.6 7.5 11.1 5.1 7.6 5.7 3.1 3 0 0 3 3 3 0 Cell division protein ZapB GIT_CC PF16559.5 gi|20093057|ref|NP_619132.1| - 9 6.2 7.2 6.3 6.7 0.5 3.4 3 1 0 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF99 PF01949.16 gi|20093058|ref|NP_619133.1| - 1.5e-66 223.3 0.2 1.7e-66 223.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|20093058|ref|NP_619133.1| - 0.0078 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Endonuclease V Tubulin PF00091.25 gi|20093060|ref|NP_619135.1| - 3.5e-41 141.6 0.7 5.8e-41 140.9 0.7 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|20093060|ref|NP_619135.1| - 1.5e-34 118.1 0.8 4.6e-34 116.6 0.8 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|20093060|ref|NP_619135.1| - 0.026 14.4 0.2 0.08 12.8 0.2 1.8 1 0 0 1 1 1 0 NAD(P)H-binding SecE PF00584.20 gi|20093061|ref|NP_619136.1| - 6.3e-06 26.0 0.1 7.9e-06 25.7 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|20093062|ref|NP_619137.1| - 1.4e-24 85.8 0.2 2e-24 85.3 0.2 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|20093062|ref|NP_619137.1| - 1.2e-06 28.3 1.1 8.3e-06 25.6 0.3 2.2 2 0 0 2 2 2 1 KOW motif Ribosomal_L11_N PF03946.14 gi|20093063|ref|NP_619138.1| - 5.7e-25 86.9 1.0 1.2e-24 85.9 1.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|20093063|ref|NP_619138.1| - 1.1e-21 77.1 0.6 1.1e-21 77.1 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|20093064|ref|NP_619139.1| - 9.9e-45 152.8 0.1 1.2e-44 152.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|20093065|ref|NP_619140.1| - 2e-24 85.6 0.3 4.3e-24 84.5 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|20093065|ref|NP_619140.1| - 4.4e-19 68.2 0.1 1e-18 67.1 0.1 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|20093065|ref|NP_619140.1| - 0.00083 19.9 30.4 0.00083 19.9 30.4 3.1 3 1 0 3 3 3 1 60s Acidic ribosomal protein DUF2780 PF11075.8 gi|20093065|ref|NP_619140.1| - 0.94 9.6 0.0 0.94 9.6 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function VcgC/VcgE (DUF2780) DUF3824 PF12868.7 gi|20093065|ref|NP_619140.1| - 5.9 7.5 6.4 13 6.4 6.4 1.5 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) Ribosomal_60s PF00428.19 gi|20093066|ref|NP_619141.1| - 8.6e-21 74.3 23.8 1e-20 74.1 23.8 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|20093066|ref|NP_619141.1| - 0.0032 17.7 4.6 0.0044 17.2 4.6 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain CAP_N PF01213.19 gi|20093066|ref|NP_619141.1| - 0.042 13.3 0.7 0.046 13.2 0.7 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF2868 PF11067.8 gi|20093066|ref|NP_619141.1| - 0.077 12.5 1.3 0.091 12.2 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) PepSY_2 PF13670.6 gi|20093066|ref|NP_619141.1| - 5.5 7.1 13.8 13 5.8 0.2 2.2 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain FGE-sulfatase PF03781.16 gi|20093067|ref|NP_619142.1| - 5.7e-53 180.2 6.6 2.7e-52 177.9 6.6 1.8 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Radical_SAM PF04055.21 gi|20093068|ref|NP_619143.1| - 7.9e-16 58.9 0.7 3.3e-15 56.8 0.1 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DUF3463 PF11946.8 gi|20093068|ref|NP_619143.1| - 9.2e-08 32.0 0.1 2e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) SPASM PF13186.6 gi|20093068|ref|NP_619143.1| - 0.0016 18.9 0.6 0.0016 18.9 0.6 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Polbeta PF18765.1 gi|20093068|ref|NP_619143.1| - 0.083 13.0 0.1 5.4 7.2 0.1 2.3 1 1 1 2 2 2 0 Polymerase beta, Nucleotidyltransferase GP3_package PF16677.5 gi|20093068|ref|NP_619143.1| - 0.16 12.1 0.2 2.4 8.3 0.0 2.6 3 0 0 3 3 3 0 DNA-packaging protein gp3 ParE_toxin PF05016.15 gi|20093069|ref|NP_619144.1| - 0.00073 20.1 0.0 0.00084 19.9 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 gi|20093069|ref|NP_619144.1| - 0.0015 18.8 0.2 0.002 18.4 0.2 1.3 1 1 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ Ribosomal_S2 PF00318.20 gi|20093069|ref|NP_619144.1| - 0.071 12.3 0.1 0.09 12.0 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein S2 V-ATPase_H_N PF03224.14 gi|20093070|ref|NP_619145.1| - 0.11 11.7 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 V-ATPase subunit H Gag_p15 PF08723.10 gi|20093070|ref|NP_619145.1| - 0.13 12.5 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Gag protein p15 KAP_NTPase PF07693.14 gi|20093072|ref|NP_619147.1| - 1.1e-09 38.0 0.0 1.1e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 KAP family P-loop domain Torsin PF06309.11 gi|20093072|ref|NP_619147.1| - 0.0018 18.4 0.0 0.0022 18.1 0.0 1.2 1 0 0 1 1 1 1 Torsin NACHT PF05729.12 gi|20093072|ref|NP_619147.1| - 0.014 15.3 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 NACHT domain DUF2791 PF10923.8 gi|20093072|ref|NP_619147.1| - 0.023 13.6 0.0 0.027 13.3 0.0 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) P-mevalo_kinase PF04275.14 gi|20093072|ref|NP_619147.1| - 0.023 14.6 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Phosphomevalonate kinase Zeta_toxin PF06414.12 gi|20093072|ref|NP_619147.1| - 0.043 13.1 0.0 0.057 12.7 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|20093072|ref|NP_619147.1| - 0.053 12.7 0.0 0.071 12.3 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|20093072|ref|NP_619147.1| - 0.086 12.9 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|20093072|ref|NP_619147.1| - 0.093 12.6 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase PQQ_2 PF13360.6 gi|20093073|ref|NP_619148.1| - 1.3e-59 201.6 6.5 1.9e-21 76.7 0.2 5.9 2 2 3 5 5 5 5 PQQ-like domain PKD PF00801.20 gi|20093073|ref|NP_619148.1| - 5.4e-59 196.0 55.7 1.4e-13 50.5 5.2 6.6 6 0 0 6 6 6 5 PKD domain PQQ_3 PF13570.6 gi|20093073|ref|NP_619148.1| - 2.5e-56 186.8 65.7 5.8e-06 26.6 0.6 16.0 16 0 0 16 16 16 13 PQQ-like domain PQQ PF01011.21 gi|20093073|ref|NP_619148.1| - 1e-36 123.1 57.1 2.4e-06 27.2 0.0 17.2 19 0 0 19 19 19 10 PQQ enzyme repeat PKD_3 PF16820.5 gi|20093073|ref|NP_619148.1| - 1.5e-09 37.4 21.1 0.21 11.4 0.3 6.5 6 0 0 6 6 6 5 PKD-like domain Y_Y_Y PF07495.13 gi|20093073|ref|NP_619148.1| - 0.029 14.3 18.4 4.4 7.3 0.1 5.1 5 0 0 5 5 5 0 Y_Y_Y domain LRR_5 PF13306.6 gi|20093074|ref|NP_619149.1| - 1.1e-130 429.5 18.7 2.6e-43 147.1 0.7 4.7 3 1 1 4 4 4 4 BspA type Leucine rich repeat region (6 copies) PKD PF00801.20 gi|20093074|ref|NP_619149.1| - 1.2e-41 140.3 49.2 2.4e-11 43.3 5.7 6.2 5 0 0 5 5 5 5 PKD domain PQQ_2 PF13360.6 gi|20093074|ref|NP_619149.1| - 1.1e-21 77.6 0.2 5.9e-13 48.9 1.0 2.5 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|20093074|ref|NP_619149.1| - 1e-19 70.4 45.4 7.8e-06 26.2 0.1 9.4 9 0 0 9 9 9 7 PQQ-like domain LRR_8 PF13855.6 gi|20093074|ref|NP_619149.1| - 1.7e-17 62.9 0.0 0.12 12.2 0.0 8.9 4 3 8 12 12 12 7 Leucine rich repeat PKD_3 PF16820.5 gi|20093074|ref|NP_619149.1| - 1.2e-09 37.8 12.4 0.24 11.2 0.2 5.7 5 0 0 5 5 5 5 PKD-like domain PQQ PF01011.21 gi|20093074|ref|NP_619149.1| - 9.2e-08 31.7 22.6 0.027 14.4 0.1 8.1 9 0 0 9 9 9 3 PQQ enzyme repeat EF-hand_6 PF13405.6 gi|20093074|ref|NP_619149.1| - 8.3 6.6 20.1 0.075 13.0 0.3 5.4 6 0 0 6 6 6 0 EF-hand domain PQQ_3 PF13570.6 gi|20093076|ref|NP_619151.1| - 3.8e-88 288.1 101.1 1.2e-06 28.8 0.1 24.0 24 0 0 24 24 24 19 PQQ-like domain PQQ_2 PF13360.6 gi|20093076|ref|NP_619151.1| - 2.2e-82 276.2 20.6 1.8e-19 70.3 0.0 9.0 3 3 6 9 9 9 8 PQQ-like domain PKD PF00801.20 gi|20093076|ref|NP_619151.1| - 3.6e-64 212.5 64.2 4.2e-14 52.2 3.3 8.3 7 1 1 8 8 8 6 PKD domain PQQ PF01011.21 gi|20093076|ref|NP_619151.1| - 2.4e-49 163.0 65.6 1.8e-05 24.4 0.0 19.8 21 0 0 21 21 21 14 PQQ enzyme repeat DUF5050 PF16472.5 gi|20093076|ref|NP_619151.1| - 3.7e-06 26.4 3.7 0.011 14.9 0.0 5.4 5 1 1 6 6 6 1 Domain of unknown function (DUF5050) PKD_3 PF16820.5 gi|20093076|ref|NP_619151.1| - 4e-06 26.5 29.4 0.018 14.8 0.4 7.1 7 0 0 7 7 6 4 PKD-like domain Kelch_1 PF01344.25 gi|20093076|ref|NP_619151.1| - 0.0014 18.1 4.7 0.042 13.4 0.2 4.5 3 0 0 3 3 3 1 Kelch motif Dockerin_1 PF00404.18 gi|20093076|ref|NP_619151.1| - 0.0098 16.1 7.4 1.9 8.7 0.1 4.7 4 0 0 4 4 4 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|20093076|ref|NP_619151.1| - 0.17 11.5 11.2 0.026 14.0 1.2 4.3 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.6 gi|20093076|ref|NP_619151.1| - 0.26 11.3 11.2 0.095 12.7 0.3 4.8 5 0 0 5 5 4 0 EF-hand domain Y_Y_Y PF07495.13 gi|20093076|ref|NP_619151.1| - 1.7 8.7 15.5 1.1 9.3 0.1 6.0 6 0 0 6 6 6 0 Y_Y_Y domain Reg_prop PF07494.11 gi|20093076|ref|NP_619151.1| - 7.5 7.2 20.7 68 4.2 0.0 9.2 9 0 0 9 9 8 0 Two component regulator propeller EF-hand_8 PF13833.6 gi|20093076|ref|NP_619151.1| - 9 6.2 11.1 1.7 8.6 2.3 3.6 4 0 0 4 4 4 0 EF-hand domain pair LRR_5 PF13306.6 gi|20093078|ref|NP_619153.1| - 1.6e-239 781.4 40.5 2.7e-44 150.2 0.3 7.8 3 2 4 7 7 7 7 BspA type Leucine rich repeat region (6 copies) LRR_8 PF13855.6 gi|20093078|ref|NP_619153.1| - 7.1e-37 125.0 0.0 0.032 14.0 0.0 14.6 7 4 10 18 18 18 15 Leucine rich repeat PKD PF00801.20 gi|20093078|ref|NP_619153.1| - 2.7e-29 100.8 40.9 8.9e-12 44.7 2.9 6.2 6 1 0 6 6 6 3 PKD domain LRR_4 PF12799.7 gi|20093078|ref|NP_619153.1| - 2.3e-17 62.8 0.0 15 6.2 0.0 14.0 8 4 7 17 17 17 1 Leucine Rich repeats (2 copies) PKD_3 PF16820.5 gi|20093078|ref|NP_619153.1| - 3.7e-06 26.6 9.4 0.24 11.2 0.1 5.0 5 0 0 5 5 5 3 PKD-like domain bMG10 PF17973.1 gi|20093078|ref|NP_619153.1| - 0.0026 18.0 0.8 0.0072 16.5 0.1 2.1 2 0 0 2 2 2 1 Bacterial Alpha-2-macroglobulin MG10 domain MitoNEET_N PF10660.9 gi|20093078|ref|NP_619153.1| - 0.082 12.9 0.7 65 3.7 0.0 5.8 8 1 1 9 9 9 0 Iron-containing outer mitochondrial membrane protein N-terminus Dockerin_1 PF00404.18 gi|20093078|ref|NP_619153.1| - 4 7.7 12.4 8.6 6.6 0.1 4.7 5 0 0 5 5 5 0 Dockerin type I domain PQQ_3 PF13570.6 gi|20093079|ref|NP_619154.1| - 8.2e-20 70.7 36.7 0.00049 20.5 0.6 8.3 8 0 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.6 gi|20093079|ref|NP_619154.1| - 6e-13 48.9 3.1 2.1e-06 27.5 2.4 2.7 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|20093079|ref|NP_619154.1| - 0.067 13.1 4.0 2.1 8.4 0.0 4.8 4 1 0 4 4 4 0 PQQ enzyme repeat PQQ_3 PF13570.6 gi|20093080|ref|NP_619155.1| - 3.1e-68 224.7 57.0 2.2e-07 31.2 0.1 17.3 17 0 0 17 17 17 13 PQQ-like domain PQQ_2 PF13360.6 gi|20093080|ref|NP_619155.1| - 2.2e-64 217.3 2.1 4.8e-27 95.1 0.1 6.7 2 2 2 6 6 6 6 PQQ-like domain NosD PF05048.13 gi|20093080|ref|NP_619155.1| - 9.6e-49 165.8 29.5 7.2e-27 94.2 13.6 3.4 4 0 0 4 4 4 2 Periplasmic copper-binding protein (NosD) PQQ PF01011.21 gi|20093080|ref|NP_619155.1| - 1.1e-37 126.2 22.8 0.0071 16.2 0.0 14.8 14 0 0 14 14 14 10 PQQ enzyme repeat PKD PF00801.20 gi|20093080|ref|NP_619155.1| - 5.4e-36 122.3 28.7 6.1e-13 48.4 5.2 4.6 4 0 0 4 4 4 3 PKD domain Beta_helix PF13229.6 gi|20093080|ref|NP_619155.1| - 5.1e-14 52.4 29.2 3.7e-09 36.6 4.4 3.1 3 0 0 3 3 3 2 Right handed beta helix region PKD_3 PF16820.5 gi|20093080|ref|NP_619155.1| - 1.2e-07 31.4 9.7 0.074 12.8 0.1 4.1 4 0 0 4 4 4 3 PKD-like domain MG2 PF01835.19 gi|20093080|ref|NP_619155.1| - 0.0086 16.5 2.3 1.9 9.0 0.1 3.5 3 0 0 3 3 3 1 MG2 domain EF-hand_6 PF13405.6 gi|20093080|ref|NP_619155.1| - 0.14 12.2 12.0 0.09 12.8 0.5 4.3 4 0 0 4 4 3 0 EF-hand domain SusF_SusE PF16411.5 gi|20093080|ref|NP_619155.1| - 0.56 10.7 7.2 1.8 9.1 0.1 3.6 3 0 0 3 3 3 0 Outer membrane protein SusF_SusE Dockerin_1 PF00404.18 gi|20093080|ref|NP_619155.1| - 0.64 10.3 6.1 1.7 8.9 0.1 3.7 3 0 0 3 3 3 0 Dockerin type I domain LRR_5 PF13306.6 gi|20093081|ref|NP_619156.1| - 2.1e-183 599.9 24.4 2.8e-43 147.0 1.6 8.5 4 3 4 8 8 8 8 BspA type Leucine rich repeat region (6 copies) PKD PF00801.20 gi|20093081|ref|NP_619156.1| - 3.5e-61 203.0 69.0 7.5e-13 48.1 2.8 8.0 8 0 0 8 8 8 6 PKD domain LRR_8 PF13855.6 gi|20093081|ref|NP_619156.1| - 2.4e-26 91.3 0.0 0.0056 16.4 0.0 12.0 4 3 13 17 17 17 10 Leucine rich repeat PKD_3 PF16820.5 gi|20093081|ref|NP_619156.1| - 4.9e-11 42.2 25.7 0.15 11.8 0.2 7.3 7 0 0 7 7 7 6 PKD-like domain MitoNEET_N PF10660.9 gi|20093081|ref|NP_619156.1| - 4.3e-06 26.6 0.4 27 4.9 0.0 7.8 7 2 2 9 9 9 0 Iron-containing outer mitochondrial membrane protein N-terminus MG2 PF01835.19 gi|20093081|ref|NP_619156.1| - 1.9e-05 25.1 7.9 0.32 11.5 0.0 5.4 5 1 1 6 6 6 2 MG2 domain Y_Y_Y PF07495.13 gi|20093081|ref|NP_619156.1| - 0.0035 17.3 25.8 5.4 7.1 0.5 7.0 7 0 0 7 7 7 2 Y_Y_Y domain bMG10 PF17973.1 gi|20093081|ref|NP_619156.1| - 0.021 15.0 0.0 0.13 12.4 0.0 2.4 1 0 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG10 domain EF-hand_1 PF00036.32 gi|20093081|ref|NP_619156.1| - 0.14 11.8 19.6 0.024 14.2 1.2 5.8 5 0 0 5 5 5 0 EF hand DUF3400 PF11880.8 gi|20093081|ref|NP_619156.1| - 0.42 10.2 3.8 1.3e+02 2.2 0.0 4.6 5 0 0 5 5 5 0 Domain of unknown function (DUF3400) NTP_transf_8 PF12281.8 gi|20093081|ref|NP_619156.1| - 3 7.8 9.4 50 3.8 0.1 5.5 5 2 2 7 7 7 0 Nucleotidyltransferase FixG_C PF11614.8 gi|20093082|ref|NP_619157.1| - 0.002 18.3 0.0 0.0089 16.2 0.0 2.1 2 1 0 2 2 2 1 IG-like fold at C-terminal of FixG, putative oxidoreductase ASH PF15780.5 gi|20093082|ref|NP_619157.1| - 0.0067 16.6 0.0 0.023 14.9 0.0 1.9 1 0 0 1 1 1 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin fn3_6 PF17766.1 gi|20093082|ref|NP_619157.1| - 0.0069 16.5 0.2 0.091 13.0 0.1 2.5 1 1 1 2 2 2 1 Fibronectin type-III domain NPCBM_assoc PF10633.9 gi|20093082|ref|NP_619157.1| - 0.027 14.7 0.0 0.1 12.9 0.0 2.0 1 1 1 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase PapD_N PF00345.20 gi|20093082|ref|NP_619157.1| - 0.033 14.1 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain Motile_Sperm PF00635.26 gi|20093082|ref|NP_619157.1| - 0.069 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 MSP (Major sperm protein) domain PQQ_3 PF13570.6 gi|20093083|ref|NP_619158.1| - 3.3e-36 122.8 30.0 5e-13 49.1 0.7 8.3 7 2 0 7 7 7 6 PQQ-like domain PQQ_2 PF13360.6 gi|20093083|ref|NP_619158.1| - 3e-30 105.5 2.9 2.7e-15 56.6 0.1 4.1 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|20093083|ref|NP_619158.1| - 1.4e-21 75.3 16.9 4.8e-09 35.7 0.3 7.1 7 1 1 8 8 8 3 PQQ enzyme repeat Tachylectin PF14517.6 gi|20093083|ref|NP_619158.1| - 0.00065 19.3 0.0 0.39 10.2 0.0 3.1 2 1 0 2 2 2 2 Tachylectin DUF4905 PF16248.5 gi|20093083|ref|NP_619158.1| - 0.011 15.6 0.5 0.26 11.2 0.1 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4905) CobN-Mg_chel PF02514.16 gi|20093084|ref|NP_619159.1| - 1.2e-302 1006.8 0.0 1.9e-302 1006.1 0.0 1.2 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PKD PF00801.20 gi|20093086|ref|NP_619161.1| - 9.1e-67 220.9 73.9 1.8e-13 50.1 4.0 7.9 8 0 0 8 8 8 6 PKD domain PQQ_2 PF13360.6 gi|20093086|ref|NP_619161.1| - 1e-64 218.4 9.3 3.6e-21 75.8 0.1 5.7 2 2 3 5 5 5 5 PQQ-like domain PQQ_3 PF13570.6 gi|20093086|ref|NP_619161.1| - 2e-54 180.8 64.3 7.8e-06 26.2 0.6 15.8 16 0 0 16 16 16 13 PQQ-like domain PQQ PF01011.21 gi|20093086|ref|NP_619161.1| - 5.1e-36 120.9 44.7 0.00031 20.5 0.0 15.9 16 0 0 16 16 16 9 PQQ enzyme repeat PKD_3 PF16820.5 gi|20093086|ref|NP_619161.1| - 4.1e-09 36.1 24.2 0.13 12.1 0.2 7.2 7 0 0 7 7 7 5 PKD-like domain MG2 PF01835.19 gi|20093086|ref|NP_619161.1| - 4.3e-05 23.9 13.8 0.076 13.5 0.1 6.3 7 0 0 7 7 7 2 MG2 domain Y_Y_Y PF07495.13 gi|20093086|ref|NP_619161.1| - 0.034 14.1 12.4 0.51 10.3 0.1 4.7 4 0 0 4 4 4 0 Y_Y_Y domain DUF5013 PF16405.5 gi|20093086|ref|NP_619161.1| - 0.16 12.2 5.5 9.9 6.4 0.0 4.8 5 0 0 5 5 5 0 Domain of unknown function (DUF5013) DUF4625 PF15418.6 gi|20093086|ref|NP_619161.1| - 4.8 7.4 6.9 20 5.4 0.1 4.4 5 0 0 5 5 4 0 Domain of unknown function (DUF4625) Dockerin_1 PF00404.18 gi|20093086|ref|NP_619161.1| - 6.7 7.0 18.7 1.7 8.9 0.1 6.5 7 0 0 7 7 7 0 Dockerin type I domain EF-hand_6 PF13405.6 gi|20093086|ref|NP_619161.1| - 7.6 6.8 26.6 0.078 12.9 0.3 6.5 7 0 0 7 7 6 0 EF-hand domain BSMAP PF12280.8 gi|20093087|ref|NP_619162.1| - 0.12 12.6 0.4 0.21 11.8 0.4 1.6 1 1 0 1 1 1 0 Brain specific membrane anchored protein CDC45 PF02724.14 gi|20093087|ref|NP_619162.1| - 0.76 8.0 9.4 1.3 7.2 9.4 1.3 1 0 0 1 1 1 0 CDC45-like protein BUD22 PF09073.10 gi|20093087|ref|NP_619162.1| - 0.77 9.0 19.0 0.94 8.7 19.0 1.1 1 0 0 1 1 1 0 BUD22 PKD PF00801.20 gi|20093088|ref|NP_619163.1| - 1.6e-48 162.4 48.8 2e-13 49.9 5.7 6.3 5 1 0 5 5 5 4 PKD domain PQQ_2 PF13360.6 gi|20093088|ref|NP_619163.1| - 1.1e-36 126.7 1.1 1.9e-21 76.7 0.1 3.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|20093088|ref|NP_619163.1| - 2.2e-31 107.5 26.0 4.8e-06 26.9 0.6 8.4 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|20093088|ref|NP_619163.1| - 1.4e-23 81.6 29.1 0.0013 18.6 0.1 10.6 11 0 0 11 11 11 7 PQQ enzyme repeat PKD_3 PF16820.5 gi|20093088|ref|NP_619163.1| - 2.3e-09 36.9 16.0 0.051 13.3 0.2 5.5 5 0 0 5 5 5 4 PKD-like domain DUF4625 PF15418.6 gi|20093088|ref|NP_619163.1| - 0.018 15.3 3.6 24 5.2 0.1 4.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4625) Y_Y_Y PF07495.13 gi|20093088|ref|NP_619163.1| - 0.048 13.6 10.2 1.2 9.2 0.9 4.1 4 0 0 4 4 4 0 Y_Y_Y domain Haemocyan_bet_s PF14830.6 gi|20093088|ref|NP_619163.1| - 0.076 13.0 0.5 1.3e+02 2.6 0.0 4.2 4 0 0 4 4 4 0 Haemocyanin beta-sandwich bPH_2 PF03703.14 gi|20093088|ref|NP_619163.1| - 0.21 11.8 0.1 1.4e+02 2.7 0.0 3.6 3 0 0 3 3 3 0 Bacterial PH domain VCBS PF13517.6 gi|20093088|ref|NP_619163.1| - 4 8.1 18.6 60 4.3 0.1 6.8 6 0 0 6 6 6 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella V-set PF07686.17 gi|20093088|ref|NP_619163.1| - 4.7 7.4 9.5 64 3.8 0.1 5.5 4 2 0 4 4 4 0 Immunoglobulin V-set domain DUF1727 PF08353.10 gi|20093088|ref|NP_619163.1| - 7.6 6.5 8.6 14 5.7 0.1 4.1 2 1 2 4 4 4 0 Domain of unknown function (DUF1727) PQQ_2 PF13360.6 gi|20093090|ref|NP_619165.1| - 1.8e-46 158.7 2.4 5.4e-13 49.1 0.3 6.8 3 2 4 7 7 7 5 PQQ-like domain PQQ_3 PF13570.6 gi|20093090|ref|NP_619165.1| - 1.1e-40 137.1 45.6 1.5e-07 31.7 0.7 14.9 15 1 1 16 16 16 10 PQQ-like domain PKD PF00801.20 gi|20093090|ref|NP_619165.1| - 2.1e-35 120.4 44.4 1.2e-10 41.1 4.0 5.8 6 0 0 6 6 6 4 PKD domain PQQ PF01011.21 gi|20093090|ref|NP_619165.1| - 4.5e-25 86.4 13.2 0.0012 18.7 0.1 12.4 12 0 0 12 12 12 6 PQQ enzyme repeat PKD_3 PF16820.5 gi|20093090|ref|NP_619165.1| - 2.2e-06 27.3 20.6 0.048 13.4 0.3 5.5 5 0 0 5 5 5 3 PKD-like domain MG2 PF01835.19 gi|20093090|ref|NP_619165.1| - 0.0049 17.3 10.4 2.5 8.6 0.4 4.4 3 1 1 4 4 4 2 MG2 domain DUF4905 PF16248.5 gi|20093090|ref|NP_619165.1| - 0.038 13.9 0.0 8.2 6.4 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4905) DUF5018 PF16410.5 gi|20093090|ref|NP_619165.1| - 0.047 12.4 5.1 1.2 7.8 0.0 4.2 5 0 0 5 5 5 0 Domain of unknown function (DUF5018) DUF1727 PF08353.10 gi|20093090|ref|NP_619165.1| - 0.17 11.8 0.7 30 4.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1727) PQQ_3 PF13570.6 gi|20093091|ref|NP_619166.1| - 9.5e-15 54.6 25.9 0.028 14.9 0.0 8.0 8 0 0 8 8 8 6 PQQ-like domain PQQ_2 PF13360.6 gi|20093091|ref|NP_619166.1| - 1.6e-05 24.7 0.7 0.00016 21.4 0.5 2.6 1 1 1 2 2 2 2 PQQ-like domain LVIVD PF08309.11 gi|20093091|ref|NP_619166.1| - 0.027 13.8 3.6 0.092 12.1 1.5 2.7 2 0 0 2 2 2 0 LVIVD repeat DUF4430 PF14478.6 gi|20093093|ref|NP_619168.1| - 2.9e-08 34.2 0.2 6.5e-08 33.1 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) Big_9 PF17963.1 gi|20093093|ref|NP_619168.1| - 0.017 15.9 9.2 0.08 13.7 3.0 3.0 2 1 0 2 2 2 0 Bacterial Ig domain Cadherin_5 PF17892.1 gi|20093093|ref|NP_619168.1| - 0.017 15.1 0.4 0.069 13.1 0.3 2.2 1 1 0 1 1 1 0 Cadherin-like domain PQQ_3 PF13570.6 gi|20093094|ref|NP_619169.1| - 8.8e-71 232.8 63.9 4.7e-08 33.3 0.0 17.1 16 0 0 16 16 16 15 PQQ-like domain PQQ_2 PF13360.6 gi|20093094|ref|NP_619169.1| - 6.2e-67 225.6 4.4 5.1e-23 81.9 0.1 6.9 2 2 4 6 6 6 6 PQQ-like domain PKD PF00801.20 gi|20093094|ref|NP_619169.1| - 3e-50 167.9 41.7 2.5e-14 52.9 2.3 6.1 5 0 0 5 5 5 4 PKD domain NosD PF05048.13 gi|20093094|ref|NP_619169.1| - 2.5e-41 141.5 49.5 1.5e-22 80.1 9.2 4.0 4 1 0 4 4 4 2 Periplasmic copper-binding protein (NosD) PQQ PF01011.21 gi|20093094|ref|NP_619169.1| - 1.8e-31 106.6 42.6 0.00058 19.7 0.3 14.7 15 0 0 15 15 13 9 PQQ enzyme repeat Beta_helix PF13229.6 gi|20093094|ref|NP_619169.1| - 1.5e-10 41.2 56.9 2.6e-07 30.6 7.3 4.2 3 1 1 4 4 4 2 Right handed beta helix region PKD_3 PF16820.5 gi|20093094|ref|NP_619169.1| - 4.7e-08 32.7 12.5 0.13 12.0 0.1 5.0 4 0 0 4 4 4 4 PKD-like domain MG2 PF01835.19 gi|20093094|ref|NP_619169.1| - 2.3e-05 24.7 4.7 0.066 13.7 0.1 3.8 4 0 0 4 4 4 2 MG2 domain EF-hand_6 PF13405.6 gi|20093094|ref|NP_619169.1| - 0.042 13.8 12.4 0.085 12.8 0.3 4.5 4 0 0 4 4 3 0 EF-hand domain LPD38 PF18857.1 gi|20093094|ref|NP_619169.1| - 0.11 12.7 1.1 3.3 7.8 0.1 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 38 Kelch_2 PF07646.15 gi|20093094|ref|NP_619169.1| - 0.97 9.5 3.5 8.8 6.5 0.1 4.1 3 0 0 3 3 3 0 Kelch motif Dockerin_1 PF00404.18 gi|20093094|ref|NP_619169.1| - 6.8 7.0 9.5 1.7 8.9 0.1 3.8 3 0 0 3 3 3 0 Dockerin type I domain EF-hand_1 PF00036.32 gi|20093094|ref|NP_619169.1| - 8 6.3 20.1 0.023 14.2 1.2 4.3 4 0 0 4 4 3 0 EF hand TPR_1 PF00515.28 gi|20093095|ref|NP_619170.1| - 1e-160 515.8 81.1 7.2e-11 41.4 0.1 24.8 25 0 0 25 25 25 23 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20093095|ref|NP_619170.1| - 5.8e-137 435.1 71.1 2.3e-08 33.5 0.1 24.9 25 0 0 25 25 25 22 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20093095|ref|NP_619170.1| - 2.7e-120 382.7 89.9 4.9e-09 35.7 0.2 24.6 25 0 0 25 25 24 23 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20093095|ref|NP_619170.1| - 2.3e-104 340.9 87.3 7.5e-08 31.9 0.5 24.8 12 10 13 25 25 25 21 TPR repeat TPR_16 PF13432.6 gi|20093095|ref|NP_619170.1| - 6.6e-85 279.5 11.6 7.1e-08 33.0 0.3 15.2 9 4 7 17 17 17 13 Tetratricopeptide repeat TPR_14 PF13428.6 gi|20093095|ref|NP_619170.1| - 4.2e-76 245.1 26.1 6.7e-05 23.4 0.0 20.9 7 6 14 21 21 20 18 Tetratricopeptide repeat TPR_9 PF13371.6 gi|20093095|ref|NP_619170.1| - 8.2e-71 234.1 10.5 3.6e-08 33.4 0.0 12.8 9 3 4 14 14 14 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|20093095|ref|NP_619170.1| - 3.9e-68 221.1 67.2 0.00011 22.3 0.0 24.5 25 1 1 26 26 24 13 Tetratricopeptide repeat TPR_12 PF13424.6 gi|20093095|ref|NP_619170.1| - 4.6e-63 209.5 56.0 7.9e-09 35.7 0.7 17.1 6 4 12 18 18 18 16 Tetratricopeptide repeat TPR_19 PF14559.6 gi|20093095|ref|NP_619170.1| - 5.8e-58 193.3 42.2 4.2e-07 30.4 1.0 15.3 6 6 12 20 20 20 13 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20093095|ref|NP_619170.1| - 8.2e-48 157.0 57.6 0.013 15.5 0.1 21.3 16 3 5 21 21 21 14 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20093095|ref|NP_619170.1| - 5.6e-36 120.8 51.0 0.0098 16.5 0.1 21.5 22 0 0 22 22 22 7 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|20093095|ref|NP_619170.1| - 1.8e-31 108.2 54.0 0.00019 21.6 0.1 11.2 6 3 5 12 12 12 11 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|20093095|ref|NP_619170.1| - 2.4e-27 96.0 23.0 7.7e-05 21.8 1.9 10.1 4 2 7 11 11 11 8 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|20093095|ref|NP_619170.1| - 6.9e-19 67.1 43.1 0.24 11.3 0.1 19.4 22 0 0 22 22 21 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|20093095|ref|NP_619170.1| - 2e-16 59.8 46.5 0.76 9.9 0.0 16.9 19 2 2 21 21 17 5 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|20093095|ref|NP_619170.1| - 5.6e-13 48.7 75.7 0.06 13.4 0.0 19.3 20 2 2 22 22 20 4 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|20093095|ref|NP_619170.1| - 2.3e-12 47.2 27.6 0.093 12.8 0.4 14.5 5 4 10 17 17 17 2 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|20093095|ref|NP_619170.1| - 4.8e-12 45.7 19.6 0.00017 20.9 2.4 9.5 3 3 6 10 10 10 2 Tetratricopeptide repeat BTAD PF03704.17 gi|20093095|ref|NP_619170.1| - 8e-12 45.8 24.9 0.0042 17.5 0.2 9.3 4 4 5 10 10 10 4 Bacterial transcriptional activator domain Alkyl_sulf_dimr PF14863.6 gi|20093095|ref|NP_619170.1| - 3.2e-08 34.1 10.9 0.37 11.3 0.0 8.2 5 3 5 10 10 9 1 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|20093095|ref|NP_619170.1| - 1.3e-07 31.7 33.9 0.36 10.9 1.7 9.8 4 4 2 7 7 7 2 Putative TPR-like repeat TPR_5 PF12688.7 gi|20093095|ref|NP_619170.1| - 1.3e-07 31.9 18.8 0.0009 19.5 0.5 9.0 9 3 0 10 10 8 2 Tetratrico peptide repeat TPR_4 PF07721.14 gi|20093095|ref|NP_619170.1| - 1.2e-06 28.5 9.5 3.4 8.6 0.0 9.9 11 0 0 11 11 9 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|20093095|ref|NP_619170.1| - 5e-06 26.8 10.6 1.2 9.5 0.0 8.0 4 2 4 9 9 8 1 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|20093095|ref|NP_619170.1| - 4.5e-05 23.6 29.5 28 5.0 0.3 12.6 13 3 3 16 16 13 0 MIT domain of nuclear receptor-binding factor 2 PPR PF01535.20 gi|20093095|ref|NP_619170.1| - 0.00042 20.4 23.9 27 5.3 0.1 12.4 14 0 0 14 14 12 0 PPR repeat ChAPs PF09295.10 gi|20093095|ref|NP_619170.1| - 0.0032 16.5 5.5 6.2 5.7 0.0 4.9 5 1 1 6 6 6 0 ChAPs (Chs5p-Arf1p-binding proteins) RPN6_N PF18055.1 gi|20093095|ref|NP_619170.1| - 0.012 16.0 6.6 5.2 7.5 0.1 5.1 5 1 1 6 6 5 0 26S proteasome regulatory subunit RPN6 N-terminal domain DUF4919 PF16266.5 gi|20093095|ref|NP_619170.1| - 0.019 14.9 6.7 3.5 7.5 0.0 5.3 6 1 1 7 7 5 0 Domain of unknown function (DUF4919) DUF5588 PF17826.1 gi|20093095|ref|NP_619170.1| - 0.022 13.7 0.2 7 5.4 0.0 4.4 4 1 1 5 5 5 0 Family of unknown function (DUF5588) PknG_TPR PF16918.5 gi|20093095|ref|NP_619170.1| - 0.026 13.2 8.9 0.66 8.7 0.2 5.2 3 2 3 7 7 7 0 Protein kinase G tetratricopeptide repeat Coatomer_E PF04733.14 gi|20093095|ref|NP_619170.1| - 0.087 12.2 19.6 2.2 7.6 0.2 7.2 6 1 2 8 8 8 0 Coatomer epsilon subunit Wzy_C_2 PF11846.8 gi|20093095|ref|NP_619170.1| - 0.31 11.0 3.1 44 3.9 0.0 5.1 6 0 0 6 6 6 0 Virulence factor membrane-bound polymerase, C-terminal RPN7 PF10602.9 gi|20093095|ref|NP_619170.1| - 0.5 10.1 32.1 44 3.7 0.1 11.8 9 3 2 11 11 10 0 26S proteasome subunit RPN7 EF-hand_1 PF00036.32 gi|20093096|ref|NP_619171.1| - 2.4e-05 23.6 1.9 0.0002 20.7 0.5 2.3 2 0 0 2 2 2 1 EF hand EF-hand_6 PF13405.6 gi|20093096|ref|NP_619171.1| - 6.4e-05 22.6 0.6 0.0016 18.2 0.1 2.3 2 0 0 2 2 2 1 EF-hand domain Dockerin_1 PF00404.18 gi|20093096|ref|NP_619171.1| - 0.0019 18.3 0.1 0.0041 17.3 0.1 1.6 1 1 1 2 2 2 1 Dockerin type I domain EF-hand_8 PF13833.6 gi|20093096|ref|NP_619171.1| - 0.011 15.6 1.2 0.025 14.4 1.2 1.6 1 0 0 1 1 1 0 EF-hand domain pair EF-hand_7 PF13499.6 gi|20093096|ref|NP_619171.1| - 0.018 15.5 0.9 0.17 12.4 0.1 2.1 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.6 gi|20093096|ref|NP_619171.1| - 0.19 11.3 0.2 0.19 11.3 0.2 2.1 3 0 0 3 3 3 0 EF hand MscL PF01741.18 gi|20093097|ref|NP_619172.1| - 0.065 13.5 0.0 0.067 13.5 0.0 1.1 1 0 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL PKD PF00801.20 gi|20093098|ref|NP_619173.1| - 2.4e-44 149.0 28.9 8.8e-15 54.3 2.5 5.1 4 0 0 4 4 4 4 PKD domain PQQ_2 PF13360.6 gi|20093098|ref|NP_619173.1| - 5.5e-32 111.3 6.3 3.4e-22 79.2 0.4 4.6 2 1 3 5 5 5 4 PQQ-like domain PQQ_3 PF13570.6 gi|20093098|ref|NP_619173.1| - 1.5e-30 104.9 51.4 5.8e-06 26.6 0.0 9.5 10 0 0 10 10 10 8 PQQ-like domain NosD PF05048.13 gi|20093098|ref|NP_619173.1| - 5.8e-29 101.1 12.0 5.8e-29 101.1 12.0 2.3 2 1 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PQQ PF01011.21 gi|20093098|ref|NP_619173.1| - 6.3e-17 60.6 13.1 0.0038 17.1 0.0 8.6 8 0 0 8 8 8 5 PQQ enzyme repeat Beta_helix PF13229.6 gi|20093098|ref|NP_619173.1| - 6.6e-14 52.1 35.0 7.1e-09 35.7 11.9 2.4 1 1 1 2 2 2 2 Right handed beta helix region PKD_3 PF16820.5 gi|20093098|ref|NP_619173.1| - 3.5e-10 39.5 14.2 0.0097 15.6 0.4 4.7 4 0 0 4 4 4 4 PKD-like domain Dockerin_1 PF00404.18 gi|20093098|ref|NP_619173.1| - 0.13 12.4 7.9 7.3 6.9 0.0 4.4 4 0 0 4 4 4 0 Dockerin type I domain DUF3400 PF11880.8 gi|20093098|ref|NP_619173.1| - 0.16 11.5 0.2 14 5.3 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3400) PQQ_3 PF13570.6 gi|20093099|ref|NP_619174.1| - 4.9e-14 52.3 34.3 0.0018 18.7 0.1 7.4 8 0 0 8 8 8 5 PQQ-like domain PQQ_2 PF13360.6 gi|20093099|ref|NP_619174.1| - 1.3e-13 51.1 0.2 7e-07 29.1 0.0 2.7 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|20093099|ref|NP_619174.1| - 0.43 10.6 12.3 0.71 9.9 0.2 5.4 5 2 0 5 5 5 0 PQQ enzyme repeat PQQ_3 PF13570.6 gi|20093101|ref|NP_619176.1| - 4.4e-71 233.8 57.6 2.3e-08 34.3 0.0 17.1 16 0 0 16 16 16 15 PQQ-like domain PQQ_2 PF13360.6 gi|20093101|ref|NP_619176.1| - 1.2e-66 224.7 1.4 1.5e-21 77.1 0.0 6.9 2 2 4 6 6 6 6 PQQ-like domain PKD PF00801.20 gi|20093101|ref|NP_619176.1| - 2.9e-60 200.0 51.9 5.7e-14 51.7 5.7 6.8 5 0 0 5 5 5 5 PKD domain NosD PF05048.13 gi|20093101|ref|NP_619176.1| - 3.5e-52 177.1 60.0 1.7e-27 96.2 18.2 4.1 3 1 1 4 4 4 3 Periplasmic copper-binding protein (NosD) PQQ PF01011.21 gi|20093101|ref|NP_619176.1| - 4.9e-34 114.7 34.9 0.0029 17.5 0.2 15.6 16 0 0 16 16 16 10 PQQ enzyme repeat Beta_helix PF13229.6 gi|20093101|ref|NP_619176.1| - 1e-12 48.2 52.3 1.6e-06 28.1 8.3 4.2 3 1 1 4 4 4 3 Right handed beta helix region PKD_3 PF16820.5 gi|20093101|ref|NP_619176.1| - 4.8e-08 32.6 17.3 0.25 11.1 0.2 6.1 5 0 0 5 5 5 3 PKD-like domain MG2 PF01835.19 gi|20093101|ref|NP_619176.1| - 6.1e-05 23.4 11.1 1.8 9.1 0.1 5.2 4 1 1 5 5 5 2 MG2 domain EF-hand_1 PF00036.32 gi|20093101|ref|NP_619176.1| - 0.056 13.0 13.6 0.024 14.1 1.2 4.8 4 0 0 4 4 4 0 EF hand Kelch_2 PF07646.15 gi|20093101|ref|NP_619176.1| - 0.14 12.2 1.8 9.3 6.4 0.1 3.8 3 0 0 3 3 3 0 Kelch motif EF-hand_6 PF13405.6 gi|20093101|ref|NP_619176.1| - 0.8 9.8 16.1 0.089 12.8 0.3 5.2 5 0 0 5 5 4 0 EF-hand domain Dockerin_1 PF00404.18 gi|20093101|ref|NP_619176.1| - 6 7.1 8.8 1.8 8.8 0.1 4.0 4 0 0 4 4 4 0 Dockerin type I domain EspG PF06872.11 gi|20093102|ref|NP_619177.1| - 0.023 13.2 0.0 0.026 13.1 0.0 1.0 1 0 0 1 1 1 0 EspG protein PQQ_3 PF13570.6 gi|20093103|ref|NP_619178.1| - 4.1e-25 87.6 29.5 1.1e-05 25.7 0.1 8.8 8 1 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.6 gi|20093103|ref|NP_619178.1| - 8.6e-20 71.3 0.2 3.4e-08 33.4 0.0 3.3 1 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|20093103|ref|NP_619178.1| - 4.5e-08 32.7 16.5 0.0097 15.8 0.0 6.6 6 0 0 6 6 6 3 PQQ enzyme repeat Kelch_6 PF13964.6 gi|20093103|ref|NP_619178.1| - 0.0034 17.6 2.7 1.7 9.1 0.0 4.4 4 0 0 4 4 4 1 Kelch motif PKD PF00801.20 gi|20093104|ref|NP_619179.1| - 6.1e-93 304.7 94.1 1.5e-14 53.6 5.1 10.1 10 1 0 10 10 10 8 PKD domain NosD PF05048.13 gi|20093104|ref|NP_619179.1| - 1.4e-44 152.2 19.9 1.4e-44 152.2 19.9 3.1 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) PQQ_2 PF13360.6 gi|20093104|ref|NP_619179.1| - 2.1e-19 70.0 0.3 6.3e-12 45.6 0.0 3.9 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|20093104|ref|NP_619179.1| - 2e-17 63.1 28.2 0.0018 18.7 0.0 8.9 8 0 0 8 8 8 6 PQQ-like domain Beta_helix PF13229.6 gi|20093104|ref|NP_619179.1| - 2.2e-13 50.3 23.5 1.2e-12 48.0 22.9 2.7 1 1 0 1 1 1 1 Right handed beta helix region PKD_3 PF16820.5 gi|20093104|ref|NP_619179.1| - 1.9e-11 43.5 34.4 0.31 10.8 0.1 8.5 8 0 0 8 8 8 6 PKD-like domain PQQ PF01011.21 gi|20093104|ref|NP_619179.1| - 2.3e-10 39.9 14.1 0.00016 21.5 0.0 7.1 7 0 0 7 7 7 2 PQQ enzyme repeat MG2 PF01835.19 gi|20093104|ref|NP_619179.1| - 1.1e-05 25.8 19.3 0.65 10.5 0.1 7.7 9 0 0 9 9 9 3 MG2 domain Dockerin_1 PF00404.18 gi|20093104|ref|NP_619179.1| - 0.76 10.0 0.0 0.76 10.0 0.0 7.4 8 0 0 8 8 8 0 Dockerin type I domain TTc_toxin_rep PF18807.1 gi|20093104|ref|NP_619179.1| - 2.2 8.2 14.5 43 4.0 0.1 6.3 6 0 0 6 6 6 0 Tripartite Tc toxins repeat PQQ PF01011.21 gi|20093105|ref|NP_619180.1| - 1.3e-06 28.1 1.3 0.037 13.9 0.1 3.0 3 1 0 3 3 3 2 PQQ enzyme repeat PQQ_2 PF13360.6 gi|20093105|ref|NP_619180.1| - 9.3e-06 25.4 0.1 1.1e-05 25.1 0.1 1.1 1 0 0 1 1 1 1 PQQ-like domain PQQ_3 PF13570.6 gi|20093105|ref|NP_619180.1| - 0.00066 20.1 2.1 0.00066 20.1 2.1 3.1 3 1 0 3 3 3 1 PQQ-like domain HEAT_2 PF13646.6 gi|20093106|ref|NP_619181.1| - 4.1e-88 289.9 30.2 6.7e-21 74.5 0.3 5.2 1 1 5 6 6 6 6 HEAT repeats HEAT_PBS PF03130.16 gi|20093106|ref|NP_619181.1| - 8e-45 147.0 34.0 0.00012 22.4 0.0 10.4 10 0 0 10 10 10 9 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20093106|ref|NP_619181.1| - 2e-43 142.7 9.2 0.00017 21.5 0.1 9.6 9 0 0 9 9 9 9 HEAT repeat HEAT_EZ PF13513.6 gi|20093106|ref|NP_619181.1| - 9.2e-38 128.2 15.5 0.00067 20.1 0.1 9.4 9 0 0 9 9 9 9 HEAT-like repeat Arm PF00514.23 gi|20093106|ref|NP_619181.1| - 4.6e-27 93.2 5.0 0.0023 17.9 0.0 8.5 3 2 5 8 8 8 6 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|20093106|ref|NP_619181.1| - 3.1e-16 59.8 2.5 0.056 13.5 0.1 7.1 2 2 5 7 7 7 7 non-SMC mitotic condensation complex subunit 1 ERAP1_C PF11838.8 gi|20093106|ref|NP_619181.1| - 8.4e-12 45.3 0.2 8.1e-07 28.9 0.0 3.1 1 1 2 3 3 3 3 ERAP1-like C-terminal domain RasGEF_N_2 PF14663.6 gi|20093106|ref|NP_619181.1| - 9.3e-11 42.1 2.9 0.73 10.3 0.1 8.0 3 2 5 9 9 9 2 Rapamycin-insensitive companion of mTOR RasGEF_N domain Adaptin_N PF01602.20 gi|20093106|ref|NP_619181.1| - 7.7e-09 34.6 0.0 0.00029 19.5 0.0 3.2 1 1 2 3 3 3 2 Adaptin N terminal region IFRD PF05004.13 gi|20093106|ref|NP_619181.1| - 9.2e-08 31.5 0.3 4.1 6.4 0.0 6.4 1 1 3 7 7 7 2 Interferon-related developmental regulator (IFRD) Vac14_Fab1_bd PF12755.7 gi|20093106|ref|NP_619181.1| - 9.9e-08 32.5 0.0 3.5 8.3 0.0 7.4 3 2 4 8 8 8 1 Vacuolar 14 Fab1-binding region Vitellogenin_N PF01347.22 gi|20093106|ref|NP_619181.1| - 2.8e-06 26.0 0.1 0.39 9.1 0.0 3.8 4 1 1 5 5 5 3 Lipoprotein amino terminal region Aconitase_B_N PF11791.8 gi|20093106|ref|NP_619181.1| - 3.5e-05 23.9 0.5 4.3 7.4 0.1 4.7 2 2 3 6 6 6 1 Aconitate B N-terminal domain Cohesin_HEAT PF12765.7 gi|20093106|ref|NP_619181.1| - 6e-05 23.3 6.7 0.073 13.4 0.3 4.8 5 0 0 5 5 5 1 HEAT repeat associated with sister chromatid cohesion DUF5578 PF17741.1 gi|20093106|ref|NP_619181.1| - 0.00017 21.1 0.0 0.017 14.6 0.0 3.4 3 1 1 4 4 4 1 Family of unknown function (DUF5578) CLASP_N PF12348.8 gi|20093106|ref|NP_619181.1| - 0.0036 16.9 1.1 31 4.0 0.1 4.7 3 1 2 5 5 5 0 CLASP N terminal DNA_alkylation PF08713.11 gi|20093106|ref|NP_619181.1| - 0.011 15.5 0.2 0.96 9.1 0.0 3.2 2 1 0 3 3 3 0 DNA alkylation repair enzyme ALF PF03752.13 gi|20093106|ref|NP_619181.1| - 0.042 13.8 17.7 5.9 6.9 0.3 7.0 7 1 1 8 8 7 0 Short repeats of unknown function Yip1 PF04893.17 gi|20093106|ref|NP_619181.1| - 0.13 11.9 6.2 0.22 11.2 6.2 1.2 1 0 0 1 1 1 0 Yip1 domain CD20 PF04103.15 gi|20093106|ref|NP_619181.1| - 0.28 11.3 6.6 0.83 9.7 6.5 1.7 1 1 1 2 2 2 0 CD20-like family SAM_adeno_trans PF01887.16 gi|20093107|ref|NP_619182.1| - 4.1e-78 262.1 0.1 4.6e-78 261.9 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Fer4 PF00037.27 gi|20093108|ref|NP_619183.1| - 0.049 13.5 0.8 0.049 13.5 0.8 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20093108|ref|NP_619183.1| - 0.18 12.8 4.4 0.55 11.2 4.4 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|20093108|ref|NP_619183.1| - 0.43 10.8 4.6 0.81 9.9 4.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain ABC2_membrane_3 PF12698.7 gi|20093109|ref|NP_619184.1| - 2.6e-25 89.3 25.0 3.1e-25 89.0 25.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|20093109|ref|NP_619184.1| - 2.4e-14 53.3 10.7 2.4e-14 53.3 10.7 2.2 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|20093109|ref|NP_619184.1| - 6e-08 32.3 12.2 1.1e-07 31.4 12.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20093109|ref|NP_619184.1| - 0.0077 16.2 7.0 0.0077 16.2 7.0 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.13 gi|20093109|ref|NP_619184.1| - 0.65 9.5 9.2 0.05 13.1 4.2 1.7 2 0 0 2 2 2 0 CcmB protein ABC_tran PF00005.27 gi|20093110|ref|NP_619185.1| - 2.5e-32 112.3 0.0 3.7e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20093110|ref|NP_619185.1| - 3.5e-16 59.9 0.5 2.4e-10 40.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20093110|ref|NP_619185.1| - 1.9e-05 24.5 0.1 0.11 12.1 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|20093110|ref|NP_619185.1| - 0.0045 16.4 1.1 3.8 6.9 0.1 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20093110|ref|NP_619185.1| - 0.0064 17.0 2.2 0.0097 16.4 1.7 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|20093110|ref|NP_619185.1| - 0.0088 15.8 0.1 0.019 14.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|20093110|ref|NP_619185.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|20093110|ref|NP_619185.1| - 0.014 15.4 0.6 5.5 7.1 0.1 3.0 2 1 1 3 3 3 0 50S ribosome-binding GTPase Rad17 PF03215.15 gi|20093110|ref|NP_619185.1| - 0.018 15.0 0.0 0.039 13.9 0.0 1.7 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|20093110|ref|NP_619185.1| - 0.034 14.6 0.4 0.17 12.3 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4162 PF13732.6 gi|20093110|ref|NP_619185.1| - 0.035 14.8 0.3 0.32 11.8 0.3 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) NTPase_1 PF03266.15 gi|20093110|ref|NP_619185.1| - 0.052 13.4 0.3 3.3 7.6 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|20093110|ref|NP_619185.1| - 0.059 13.1 0.0 0.083 12.6 0.0 1.3 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|20093110|ref|NP_619185.1| - 0.09 12.7 0.2 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|20093110|ref|NP_619185.1| - 0.096 13.0 0.2 0.67 10.2 0.2 2.2 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|20093110|ref|NP_619185.1| - 0.15 11.0 0.0 0.29 10.1 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|20093110|ref|NP_619185.1| - 0.27 10.9 1.3 6.2 6.5 0.2 2.4 2 0 0 2 2 2 0 AAA domain DNA_binding_1 PF01035.20 gi|20093111|ref|NP_619186.1| - 1e-34 118.5 0.0 1.4e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.15 gi|20093111|ref|NP_619186.1| - 3.3e-10 40.6 0.0 6.5e-10 39.7 0.0 1.5 1 1 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Peptidase_M3 PF01432.20 gi|20093112|ref|NP_619187.1| - 3.6e-06 26.5 2.4 4.5e-06 26.2 2.4 1.1 1 0 0 1 1 1 1 Peptidase family M3 DUF1679 PF07914.11 gi|20093112|ref|NP_619187.1| - 0.069 12.0 1.4 0.11 11.3 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1679) RPAP3_C PF13877.6 gi|20093112|ref|NP_619187.1| - 0.16 12.5 0.4 0.38 11.3 0.0 1.9 3 0 0 3 3 3 0 Potential Monad-binding region of RPAP3 LolA_like PF17131.4 gi|20093113|ref|NP_619188.1| - 2.9e-17 63.0 0.4 9.7e-17 61.3 0.1 1.9 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein DUF4367 PF14285.6 gi|20093113|ref|NP_619188.1| - 1.3e-12 48.1 2.8 1.3e-12 48.1 2.8 3.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) DUF2092 PF09865.9 gi|20093113|ref|NP_619188.1| - 1e-07 31.6 0.1 1.5e-05 24.4 0.1 2.3 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) LolA PF03548.15 gi|20093113|ref|NP_619188.1| - 2.4e-07 30.6 0.0 2.4e-06 27.3 0.0 2.2 1 1 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA MucB_RseB PF03888.14 gi|20093113|ref|NP_619188.1| - 6.6e-07 29.0 0.0 1e-06 28.4 0.0 1.5 1 1 0 1 1 1 1 MucB/RseB N-terminal domain DUF1571 PF07608.11 gi|20093113|ref|NP_619188.1| - 2.3e-06 27.2 0.1 1e-05 25.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1571) DUF4245 PF14030.6 gi|20093113|ref|NP_619188.1| - 0.0015 18.6 0.1 0.028 14.4 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF4245) Sec62 PF03839.16 gi|20093113|ref|NP_619188.1| - 0.011 15.3 0.9 0.018 14.6 0.9 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 DUF1329 PF07044.11 gi|20093113|ref|NP_619188.1| - 0.013 14.8 0.2 0.029 13.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1329) Transglut_i_TM PF14400.6 gi|20093113|ref|NP_619188.1| - 0.046 13.8 0.5 9.3 6.3 0.1 2.2 2 0 0 2 2 2 0 Inactive transglutaminase fused to 7 transmembrane helices LolA_like PF17131.4 gi|20093114|ref|NP_619189.1| - 1.6e-15 57.3 0.1 3.9e-15 56.0 0.1 1.7 1 0 0 1 1 1 1 Outer membrane lipoprotein-sorting protein DUF4367 PF14285.6 gi|20093114|ref|NP_619189.1| - 9.8e-14 51.7 1.9 9.8e-14 51.7 1.9 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) DUF2092 PF09865.9 gi|20093114|ref|NP_619189.1| - 2.3e-09 36.9 0.1 0.0033 16.8 0.4 2.7 3 0 0 3 3 3 2 Predicted periplasmic protein (DUF2092) LolA PF03548.15 gi|20093114|ref|NP_619189.1| - 3.3e-07 30.2 0.1 1.1e-06 28.5 0.1 1.9 1 1 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA MucB_RseB PF03888.14 gi|20093114|ref|NP_619189.1| - 1.7e-06 27.7 0.0 2.6e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 MucB/RseB N-terminal domain DUF1571 PF07608.11 gi|20093114|ref|NP_619189.1| - 8.2e-05 22.1 0.1 0.00025 20.5 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1571) Sec62 PF03839.16 gi|20093114|ref|NP_619189.1| - 0.033 13.7 1.1 0.057 12.9 1.1 1.3 1 0 0 1 1 1 0 Translocation protein Sec62 GRP PF07172.11 gi|20093114|ref|NP_619189.1| - 0.2 12.3 0.1 0.35 11.6 0.1 1.4 1 0 0 1 1 1 0 Glycine rich protein family Membrane_bind PF14564.6 gi|20093114|ref|NP_619189.1| - 0.44 11.0 2.9 0.56 10.7 1.3 2.0 2 0 0 2 2 2 0 Membrane binding DUF4367 PF14285.6 gi|20093115|ref|NP_619190.1| - 3.9e-14 53.0 0.6 3.9e-14 53.0 0.6 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4367) LolA_like PF17131.4 gi|20093115|ref|NP_619190.1| - 1.1e-11 44.8 0.0 2.6e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Outer membrane lipoprotein-sorting protein DUF1571 PF07608.11 gi|20093115|ref|NP_619190.1| - 3.3e-05 23.4 0.2 7.8e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1571) MucB_RseB PF03888.14 gi|20093115|ref|NP_619190.1| - 5.4e-05 22.8 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 MucB/RseB N-terminal domain DUF2092 PF09865.9 gi|20093115|ref|NP_619190.1| - 0.0043 16.4 0.0 0.22 10.9 0.0 2.4 2 0 0 2 2 2 1 Predicted periplasmic protein (DUF2092) DUF1329 PF07044.11 gi|20093115|ref|NP_619190.1| - 0.013 14.8 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1329) LolA_like PF17131.4 gi|20093116|ref|NP_619191.1| - 3.7e-10 39.8 0.1 1.1e-09 38.4 0.1 1.7 2 0 0 2 2 2 1 Outer membrane lipoprotein-sorting protein DUF4367 PF14285.6 gi|20093116|ref|NP_619191.1| - 3.4e-09 37.1 1.9 6.2e-09 36.3 0.1 2.5 2 2 0 2 2 2 1 Domain of unknown function (DUF4367) MucB_RseB PF03888.14 gi|20093116|ref|NP_619191.1| - 5.8e-05 22.7 0.0 0.00016 21.3 0.0 1.7 2 0 0 2 2 2 1 MucB/RseB N-terminal domain DUF2092 PF09865.9 gi|20093116|ref|NP_619191.1| - 6.5e-05 22.4 0.0 0.0029 17.0 0.0 2.2 2 0 0 2 2 2 1 Predicted periplasmic protein (DUF2092) DUF1571 PF07608.11 gi|20093116|ref|NP_619191.1| - 0.00094 18.7 0.0 0.0024 17.3 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1571) DUF5052 PF16475.5 gi|20093116|ref|NP_619191.1| - 0.0081 15.8 0.1 0.44 10.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF5052) DUF1329 PF07044.11 gi|20093116|ref|NP_619191.1| - 0.061 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1329) ThiC_Rad_SAM PF01964.18 gi|20093117|ref|NP_619192.1| - 1.3e-175 584.2 0.4 1.5e-175 584.0 0.4 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Glycos_transf_2 PF00535.26 gi|20093118|ref|NP_619193.1| - 9.7e-17 61.3 0.0 1.3e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20093118|ref|NP_619193.1| - 3.8e-07 30.2 0.0 5.6e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|20093118|ref|NP_619193.1| - 0.0023 18.4 0.0 0.0044 17.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 DsbD PF02683.15 gi|20093118|ref|NP_619193.1| - 0.031 14.2 3.7 0.049 13.5 3.7 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Bmp PF02608.14 gi|20093118|ref|NP_619193.1| - 0.071 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like CBS PF00571.28 gi|20093118|ref|NP_619193.1| - 0.11 13.0 0.0 0.34 11.4 0.0 1.8 1 0 0 1 1 1 0 CBS domain TBP PF00352.21 gi|20093119|ref|NP_619194.1| - 2.5e-55 184.4 0.2 3.7e-27 94.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|20093119|ref|NP_619194.1| - 5.7e-08 32.8 0.0 0.0049 17.0 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|20093119|ref|NP_619194.1| - 0.0055 16.3 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 2 NAD(P)H dehydrogenase subunit S RTT107_BRCT_5 PF16770.5 gi|20093119|ref|NP_619194.1| - 0.024 14.5 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain SMC_ScpB PF04079.16 gi|20093120|ref|NP_619195.1| - 4.9e-38 130.3 0.0 1.5e-37 128.7 0.0 1.8 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB EnY2 PF10163.9 gi|20093120|ref|NP_619195.1| - 0.00037 20.8 0.2 0.0049 17.2 0.1 2.8 3 1 0 3 3 3 1 Transcription factor e(y)2 HTH_20 PF12840.7 gi|20093120|ref|NP_619195.1| - 0.086 12.9 0.1 7.4 6.7 0.0 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain SMC_ScpA PF02616.14 gi|20093121|ref|NP_619196.1| - 7.3e-19 68.6 1.8 2.3e-16 60.4 1.8 2.2 1 1 0 1 1 1 1 Segregation and condensation protein ScpA SMC_N PF02463.19 gi|20093122|ref|NP_619197.1| - 2.7e-71 239.5 0.0 6.4e-71 238.3 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|20093122|ref|NP_619197.1| - 2.9e-33 114.6 0.1 1.2e-32 112.7 0.0 2.2 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|20093122|ref|NP_619197.1| - 4.6e-09 36.5 18.6 4.6e-09 36.5 18.6 3.8 2 2 1 3 3 3 1 AAA ATPase domain AAA_21 PF13304.6 gi|20093122|ref|NP_619197.1| - 1.7e-08 34.6 12.2 6.7e-05 22.8 0.1 4.1 3 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|20093122|ref|NP_619197.1| - 8.6e-07 28.6 0.1 2.2e-06 27.3 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|20093122|ref|NP_619197.1| - 0.00033 21.2 48.9 0.00033 21.2 48.9 6.8 2 2 1 3 3 1 1 AAA domain APG6_N PF17675.1 gi|20093122|ref|NP_619197.1| - 0.016 15.7 5.1 0.016 15.7 5.1 9.7 2 2 7 9 9 9 0 Apg6 coiled-coil region Urocanase PF01175.18 gi|20093122|ref|NP_619197.1| - 0.69 9.5 5.7 1.7 8.3 1.2 3.4 2 1 0 2 2 2 0 Urocanase Rossmann-like domain DUF1664 PF07889.12 gi|20093122|ref|NP_619197.1| - 1.1 9.3 61.6 0.21 11.7 1.1 8.5 4 2 4 9 9 9 0 Protein of unknown function (DUF1664) GIT_CC PF16559.5 gi|20093122|ref|NP_619197.1| - 1.2 9.0 14.2 0.1 12.5 2.3 4.4 4 0 0 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF3584 PF12128.8 gi|20093122|ref|NP_619197.1| - 2.1 5.7 89.3 0.032 11.8 33.2 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3584) VASP_tetra PF08776.11 gi|20093123|ref|NP_619198.1| - 1.1e-06 28.1 0.1 0.00071 19.1 0.2 3.0 2 0 0 2 2 2 2 VASP tetramerisation domain MHC2-interact PF09307.10 gi|20093123|ref|NP_619198.1| - 0.043 13.8 0.3 0.098 12.6 0.3 1.6 1 0 0 1 1 1 0 CLIP, MHC2 interacting TMF_DNA_bd PF12329.8 gi|20093123|ref|NP_619198.1| - 0.28 11.2 4.8 3.6 7.7 1.7 2.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding FeoB_N PF02421.18 gi|20093125|ref|NP_619200.1| - 2.4e-54 183.1 0.1 4.1e-54 182.3 0.1 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|20093125|ref|NP_619200.1| - 2.2e-27 95.6 18.5 6.1e-14 52.3 8.4 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|20093125|ref|NP_619200.1| - 3.1e-18 65.9 0.0 5.7e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|20093125|ref|NP_619200.1| - 1.5e-15 56.6 0.8 1.5e-15 56.6 0.8 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 gi|20093125|ref|NP_619200.1| - 0.0021 17.4 0.0 0.0034 16.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|20093125|ref|NP_619200.1| - 0.013 15.5 1.0 0.3 11.1 0.0 2.2 1 1 0 2 2 2 0 Dynamin family ATP_bind_1 PF03029.17 gi|20093125|ref|NP_619200.1| - 0.058 13.2 0.2 0.17 11.6 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Fe_dep_repr_C PF02742.15 gi|20093126|ref|NP_619201.1| - 8.8e-29 99.4 0.2 3e-28 97.7 0.2 1.9 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|20093126|ref|NP_619201.1| - 4.8e-23 81.1 0.3 1.1e-22 80.0 0.3 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|20093126|ref|NP_619201.1| - 2e-16 60.0 0.3 1.2e-14 54.3 0.2 2.3 2 0 0 2 2 2 1 FeoA domain MarR PF01047.22 gi|20093126|ref|NP_619201.1| - 3.8e-08 33.1 0.0 9.3e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20093126|ref|NP_619201.1| - 5.5e-08 32.3 0.0 3.8e-07 29.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20093126|ref|NP_619201.1| - 6.6e-07 29.1 0.1 1.3e-06 28.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|20093126|ref|NP_619201.1| - 1.4e-06 28.1 0.0 3.8e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|20093126|ref|NP_619201.1| - 1.5e-06 28.0 0.0 3.3e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|20093126|ref|NP_619201.1| - 3.8e-06 27.3 0.0 8.7e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|20093126|ref|NP_619201.1| - 1.1e-05 25.3 0.0 3e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|20093126|ref|NP_619201.1| - 1.5e-05 24.8 0.0 2.6e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|20093126|ref|NP_619201.1| - 0.00024 21.4 0.0 0.00075 19.8 0.0 1.8 2 1 0 2 2 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|20093126|ref|NP_619201.1| - 0.00029 20.6 0.0 0.00055 19.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|20093126|ref|NP_619201.1| - 0.00029 20.4 0.1 0.00059 19.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2250 PF10007.9 gi|20093126|ref|NP_619201.1| - 0.00032 20.7 0.5 0.00067 19.7 0.5 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.16 gi|20093126|ref|NP_619201.1| - 0.00043 20.0 0.0 0.0009 19.0 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_6 PF01418.17 gi|20093126|ref|NP_619201.1| - 0.00052 19.9 0.0 0.0013 18.7 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family GntR PF00392.21 gi|20093126|ref|NP_619201.1| - 0.003 17.2 0.0 0.0096 15.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_micro PF17007.5 gi|20093126|ref|NP_619201.1| - 0.0046 15.8 0.1 0.0063 15.4 0.1 1.1 1 0 0 1 1 1 1 HTH-like HTH_Crp_2 PF13545.6 gi|20093126|ref|NP_619201.1| - 0.0078 16.2 0.0 0.024 14.6 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|20093126|ref|NP_619201.1| - 0.0088 16.0 0.1 0.017 15.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|20093126|ref|NP_619201.1| - 0.012 15.3 0.0 0.024 14.4 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_AsnC-type PF13404.6 gi|20093126|ref|NP_619201.1| - 0.014 15.2 0.0 0.033 14.0 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain FaeA PF04703.12 gi|20093126|ref|NP_619201.1| - 0.036 14.4 0.0 0.07 13.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein IF2_N PF04760.15 gi|20093126|ref|NP_619201.1| - 0.045 13.6 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region FeoC PF09012.10 gi|20093126|ref|NP_619201.1| - 0.054 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator TFIIE_alpha PF02002.17 gi|20093126|ref|NP_619201.1| - 0.073 12.9 0.0 0.2 11.5 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_10 PF04967.12 gi|20093126|ref|NP_619201.1| - 0.086 12.7 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain AAA_assoc_C PF09821.9 gi|20093126|ref|NP_619201.1| - 0.091 13.3 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 C-terminal AAA-associated domain Acetyltransf_1 PF00583.25 gi|20093127|ref|NP_619202.1| - 2.3e-12 47.2 0.0 2.8e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20093127|ref|NP_619202.1| - 1.4e-09 38.2 0.0 2.1e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20093127|ref|NP_619202.1| - 1.7e-08 34.5 0.0 2.1e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20093127|ref|NP_619202.1| - 0.00034 20.7 0.0 0.0069 16.5 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20093127|ref|NP_619202.1| - 0.00048 20.2 0.0 0.0007 19.7 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|20093127|ref|NP_619202.1| - 0.0042 17.2 0.0 0.0073 16.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20093127|ref|NP_619202.1| - 0.018 15.7 0.0 0.021 15.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20093127|ref|NP_619202.1| - 0.021 14.8 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_6 PF13480.7 gi|20093127|ref|NP_619202.1| - 0.052 13.7 0.1 0.067 13.3 0.1 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain BioY PF02632.14 gi|20093128|ref|NP_619203.1| - 1.9e-41 141.3 15.2 1.9e-41 141.3 15.2 1.6 2 0 0 2 2 2 1 BioY family ECF_trnsprt PF12822.7 gi|20093128|ref|NP_619203.1| - 4.5e-05 23.6 17.4 5.6e-05 23.3 17.4 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DUF2269 PF10027.9 gi|20093128|ref|NP_619203.1| - 0.05 13.6 0.8 0.05 13.6 0.8 1.9 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ABC_tran PF00005.27 gi|20093129|ref|NP_619204.1| - 3.2e-27 95.7 0.0 6e-27 94.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|20093129|ref|NP_619204.1| - 1.4e-09 38.2 0.0 0.00014 21.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20093129|ref|NP_619204.1| - 2e-09 37.2 0.9 2.7e-07 30.3 0.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|20093129|ref|NP_619204.1| - 0.0011 19.5 0.5 0.045 14.3 0.2 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20093129|ref|NP_619204.1| - 0.0015 18.2 0.1 0.0031 17.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|20093129|ref|NP_619204.1| - 0.0019 18.2 0.2 0.12 12.3 0.1 2.2 2 0 0 2 2 2 1 NTPase RecA PF00154.21 gi|20093129|ref|NP_619204.1| - 0.0026 17.3 0.2 0.68 9.4 0.1 2.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein MeaB PF03308.16 gi|20093129|ref|NP_619204.1| - 0.0043 16.1 0.0 0.0062 15.5 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|20093129|ref|NP_619204.1| - 0.0044 17.3 0.2 0.1 12.9 0.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|20093129|ref|NP_619204.1| - 0.022 14.5 0.6 0.086 12.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20093129|ref|NP_619204.1| - 0.023 14.3 0.0 0.37 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|20093129|ref|NP_619204.1| - 0.023 14.0 0.6 0.053 12.9 0.2 1.7 2 0 0 2 2 2 0 KaiC CbiA PF01656.23 gi|20093129|ref|NP_619204.1| - 0.028 14.5 0.1 0.044 13.9 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.6 gi|20093129|ref|NP_619204.1| - 0.039 14.5 0.5 0.07 13.6 0.5 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|20093129|ref|NP_619204.1| - 0.069 13.2 0.1 9.2 6.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|20093129|ref|NP_619204.1| - 0.079 12.8 0.1 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 Adenylylsulphate kinase PRK PF00485.18 gi|20093129|ref|NP_619204.1| - 0.11 12.3 0.1 0.23 11.2 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|20093129|ref|NP_619204.1| - 0.13 12.6 0.1 0.19 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.7 gi|20093129|ref|NP_619204.1| - 0.14 11.1 0.2 1.6 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_15 PF13175.6 gi|20093129|ref|NP_619204.1| - 0.17 11.5 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|20093129|ref|NP_619204.1| - 0.18 11.7 0.1 0.31 10.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|20093129|ref|NP_619204.1| - 0.21 11.3 0.1 1.1 9.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|20093129|ref|NP_619204.1| - 0.22 11.3 0.1 11 5.7 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|20093130|ref|NP_619205.1| - 2e-30 106.1 0.0 4.4e-30 105.0 0.0 1.5 1 1 1 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|20093130|ref|NP_619205.1| - 1.6e-07 31.4 0.2 0.00017 21.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|20093130|ref|NP_619205.1| - 0.00067 18.7 0.0 0.0013 17.8 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|20093130|ref|NP_619205.1| - 0.0014 19.2 0.1 0.011 16.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20093130|ref|NP_619205.1| - 0.0027 18.1 0.1 0.0044 17.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|20093130|ref|NP_619205.1| - 0.0037 17.0 0.0 0.0076 16.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|20093130|ref|NP_619205.1| - 0.0055 17.0 0.0 0.022 15.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|20093130|ref|NP_619205.1| - 0.006 16.1 0.1 0.12 11.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|20093130|ref|NP_619205.1| - 0.026 13.8 0.2 0.78 9.0 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin RsgA_GTPase PF03193.16 gi|20093130|ref|NP_619205.1| - 0.039 13.8 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase YtxH PF12732.7 gi|20093130|ref|NP_619205.1| - 0.059 13.9 0.1 0.32 11.6 0.0 2.1 3 0 0 3 3 3 0 YtxH-like protein AAA_30 PF13604.6 gi|20093130|ref|NP_619205.1| - 0.06 13.1 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain CbiQ PF02361.16 gi|20093131|ref|NP_619206.1| - 1.4e-35 122.9 10.8 2e-35 122.4 10.8 1.2 1 0 0 1 1 1 1 Cobalt transport protein HTH_5 PF01022.20 gi|20093132|ref|NP_619207.1| - 6.2e-17 61.2 1.0 1.1e-16 60.5 1.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20093132|ref|NP_619207.1| - 5e-11 42.5 1.0 8.5e-11 41.8 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Arg_repressor PF01316.21 gi|20093132|ref|NP_619207.1| - 4.6e-05 23.1 0.1 8.2e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain TrmB PF01978.19 gi|20093132|ref|NP_619207.1| - 0.0031 17.3 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|20093132|ref|NP_619207.1| - 0.0038 17.1 1.0 0.011 15.6 1.0 1.8 1 1 1 2 2 2 1 MarR family HTH_34 PF13601.6 gi|20093132|ref|NP_619207.1| - 0.013 15.7 0.1 0.026 14.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|20093132|ref|NP_619207.1| - 0.05 13.5 0.4 0.12 12.4 0.4 1.6 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.27 gi|20093132|ref|NP_619207.1| - 0.057 13.4 0.1 0.16 11.9 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_WhiA PF02650.14 gi|20093132|ref|NP_619207.1| - 0.063 13.6 0.0 0.097 13.0 0.0 1.4 1 0 0 1 1 1 0 WhiA C-terminal HTH domain DUF4423 PF14394.6 gi|20093132|ref|NP_619207.1| - 0.066 12.9 0.1 0.13 11.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) ArsP_1 PF03773.13 gi|20093133|ref|NP_619208.1| - 8.4e-48 163.0 6.7 1.2e-47 162.5 6.7 1.3 1 0 0 1 1 1 1 Predicted permease Phage_holin_2_4 PF16082.5 gi|20093133|ref|NP_619208.1| - 2.4 7.9 4.8 0.79 9.5 1.2 2.0 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like PspC PF04024.12 gi|20093134|ref|NP_619209.1| - 7.8e-23 80.0 0.8 1e-22 79.7 0.8 1.1 1 0 0 1 1 1 1 PspC domain US2 PF02476.15 gi|20093134|ref|NP_619209.1| - 0.82 10.4 3.8 7 7.4 0.3 2.2 1 1 1 2 2 2 0 US2 family Methyltransf_11 PF08241.12 gi|20093135|ref|NP_619210.1| - 7.7e-28 97.0 0.0 1e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093135|ref|NP_619210.1| - 1.7e-25 89.7 0.0 2.1e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|20093135|ref|NP_619210.1| - 2e-25 89.3 0.0 2.6e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093135|ref|NP_619210.1| - 1.4e-23 83.4 0.0 1.5e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093135|ref|NP_619210.1| - 1.7e-20 73.6 0.0 2.2e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20093135|ref|NP_619210.1| - 7.8e-15 55.1 0.0 9e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20093135|ref|NP_619210.1| - 2.4e-10 40.6 0.0 3.1e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|20093135|ref|NP_619210.1| - 1.2e-06 28.0 0.0 1.5e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|20093135|ref|NP_619210.1| - 2.2e-06 27.4 0.1 9.2e-06 25.4 0.1 1.8 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|20093135|ref|NP_619210.1| - 3.6e-06 27.0 0.0 1.7e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Hypothetical methyltransferase RrnaAD PF00398.20 gi|20093135|ref|NP_619210.1| - 4e-06 26.1 0.0 7e-06 25.3 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|20093135|ref|NP_619210.1| - 8.8e-06 25.9 0.0 1.5e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase DREV PF05219.12 gi|20093135|ref|NP_619210.1| - 8.9e-06 25.0 0.0 1.3e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase GCD14 PF08704.10 gi|20093135|ref|NP_619210.1| - 1.2e-05 25.2 0.0 1.5e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.17 gi|20093135|ref|NP_619210.1| - 5.5e-05 22.7 0.0 0.0038 16.7 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Fibrillarin PF01269.17 gi|20093135|ref|NP_619210.1| - 0.0002 20.5 0.0 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|20093135|ref|NP_619210.1| - 0.00026 20.7 0.0 0.0012 18.5 0.0 1.8 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|20093135|ref|NP_619210.1| - 0.00037 21.5 0.0 0.00058 20.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|20093135|ref|NP_619210.1| - 0.00044 18.9 0.0 0.00057 18.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|20093135|ref|NP_619210.1| - 0.0014 17.7 0.0 0.0016 17.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|20093135|ref|NP_619210.1| - 0.0025 17.3 0.0 0.0031 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|20093135|ref|NP_619210.1| - 0.0055 16.4 0.0 0.0082 15.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|20093135|ref|NP_619210.1| - 0.013 15.4 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 gi|20093135|ref|NP_619210.1| - 0.031 13.8 0.0 2.6 7.5 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain MTS PF05175.14 gi|20093135|ref|NP_619210.1| - 0.05 13.1 0.0 0.1 12.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain DRE2_N PF16803.5 gi|20093135|ref|NP_619210.1| - 0.091 13.0 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus Methyltransf_16 PF10294.9 gi|20093135|ref|NP_619210.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Lysine methyltransferase Aminotran_4 PF01063.19 gi|20093137|ref|NP_619212.1| - 5.6e-56 189.9 0.0 6.6e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV PBP_like PF12727.7 gi|20093138|ref|NP_619213.1| - 5.3e-52 175.8 0.0 9.1e-52 175.0 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|20093138|ref|NP_619213.1| - 1.7e-43 148.1 0.3 2.5e-43 147.6 0.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|20093138|ref|NP_619213.1| - 1e-24 86.9 0.0 1.7e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|20093138|ref|NP_619213.1| - 1.9e-14 53.6 0.1 1.1e-13 51.1 0.0 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) T2SSE PF00437.20 gi|20093138|ref|NP_619213.1| - 0.0072 15.4 0.1 0.012 14.7 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Phosphonate-bd PF12974.7 gi|20093138|ref|NP_619213.1| - 0.0097 15.5 0.0 0.03 13.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MMR_HSR1_Xtn PF16897.5 gi|20093139|ref|NP_619214.1| - 1.6e-35 121.3 0.8 2.9e-35 120.5 0.8 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|20093139|ref|NP_619214.1| - 2.6e-20 72.6 0.0 5.3e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|20093139|ref|NP_619214.1| - 1.2e-16 60.5 0.0 2.5e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|20093139|ref|NP_619214.1| - 1.2e-11 44.3 0.1 3e-11 43.1 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|20093139|ref|NP_619214.1| - 0.00081 19.3 0.4 0.11 12.3 0.1 2.7 2 1 0 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|20093139|ref|NP_619214.1| - 0.0032 17.6 2.6 0.59 10.2 0.3 3.1 2 1 1 3 3 3 2 Dynamin family Phage_B PF02304.15 gi|20093139|ref|NP_619214.1| - 0.0062 16.9 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 Scaffold protein B AIG1 PF04548.16 gi|20093139|ref|NP_619214.1| - 0.033 13.5 0.4 0.051 12.9 0.0 1.5 2 0 0 2 2 2 0 AIG1 family YchF-GTPase_C PF06071.13 gi|20093139|ref|NP_619214.1| - 0.056 13.6 0.0 1.3 9.2 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF933) AAA_16 PF13191.6 gi|20093139|ref|NP_619214.1| - 0.22 11.9 0.2 0.53 10.6 0.2 1.6 1 0 0 1 1 1 0 AAA ATPase domain FlxA PF14282.6 gi|20093139|ref|NP_619214.1| - 0.22 11.5 3.3 1.9 8.5 2.3 2.0 1 1 1 2 2 2 0 FlxA-like protein DUF1192 PF06698.11 gi|20093139|ref|NP_619214.1| - 0.92 9.6 4.3 0.46 10.6 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Dala_Dala_lig_C PF07478.13 gi|20093140|ref|NP_619215.1| - 6.2e-23 81.4 0.0 1e-22 80.7 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_25 PF13649.6 gi|20093140|ref|NP_619215.1| - 1.2e-22 80.4 0.0 1.9e-21 76.6 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20093140|ref|NP_619215.1| - 3.9e-18 65.9 0.0 1.2e-17 64.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093140|ref|NP_619215.1| - 3.7e-17 62.5 0.0 1.3e-16 60.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093140|ref|NP_619215.1| - 3.2e-13 49.6 0.0 5.3e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20093140|ref|NP_619215.1| - 1.3e-09 38.1 0.0 3.2e-09 36.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093140|ref|NP_619215.1| - 1.8e-07 31.8 0.0 1.1e-05 26.0 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|20093140|ref|NP_619215.1| - 2.1e-05 24.0 0.0 3.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|20093140|ref|NP_619215.1| - 5.5e-05 22.8 0.1 0.00017 21.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain CMAS PF02353.20 gi|20093140|ref|NP_619215.1| - 0.00023 20.6 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase ATPgrasp_Ter PF15632.6 gi|20093140|ref|NP_619215.1| - 0.002 17.9 0.0 0.35 10.6 0.0 3.0 3 0 0 3 3 3 1 ATP-grasp in the biosynthetic pathway with Ter operon Pox_MCEL PF03291.16 gi|20093140|ref|NP_619215.1| - 0.0066 15.6 0.0 0.091 11.8 0.0 2.0 1 1 0 1 1 1 1 mRNA capping enzyme ATP-grasp_4 PF13535.6 gi|20093140|ref|NP_619215.1| - 0.0072 15.9 0.0 0.047 13.3 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain Methyltransf_4 PF02390.17 gi|20093140|ref|NP_619215.1| - 0.082 12.4 0.0 0.35 10.3 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase Alk_phosphatase PF00245.20 gi|20093141|ref|NP_619216.1| - 2.1e-91 306.9 0.0 2.9e-91 306.5 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase Metalloenzyme PF01676.18 gi|20093141|ref|NP_619216.1| - 5.9e-06 25.8 0.0 2.2e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Metalloenzyme superfamily URO-D PF01208.17 gi|20093142|ref|NP_619217.1| - 1.3e-98 330.4 0.0 1.4e-98 330.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) FMN_red PF03358.15 gi|20093143|ref|NP_619218.1| - 1.2e-24 86.8 0.0 1.4e-24 86.6 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|20093143|ref|NP_619218.1| - 3.8e-11 43.1 0.0 4.6e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold MalM PF07148.12 gi|20093144|ref|NP_619219.1| - 0.0019 18.0 0.2 0.015 15.1 0.0 2.0 2 0 0 2 2 2 1 Maltose operon periplasmic protein precursor (MalM) TrmB PF01978.19 gi|20093144|ref|NP_619219.1| - 0.0043 16.9 0.9 0.0081 16.0 0.9 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|20093144|ref|NP_619219.1| - 0.0074 16.2 2.5 0.019 14.9 0.1 2.2 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|20093144|ref|NP_619219.1| - 0.0085 16.0 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TBPIP PF07106.13 gi|20093144|ref|NP_619219.1| - 0.028 14.3 0.4 0.063 13.2 0.4 1.7 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_24 PF13412.6 gi|20093144|ref|NP_619219.1| - 0.034 13.7 1.1 0.058 13.0 1.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PIG-P PF08510.12 gi|20093144|ref|NP_619219.1| - 0.034 14.1 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 PIG-P HTH_IclR PF09339.10 gi|20093144|ref|NP_619219.1| - 0.056 13.2 0.1 0.098 12.5 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain SWM_repeat PF13753.6 gi|20093145|ref|NP_619220.1| - 0.058 13.6 0.4 0.4 10.9 0.4 2.2 1 1 0 1 1 1 0 Putative flagellar system-associated repeat ABC2_membrane_2 PF12679.7 gi|20093146|ref|NP_619221.1| - 9.5e-47 159.6 15.4 1.1e-46 159.4 15.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|20093146|ref|NP_619221.1| - 1.2e-05 25.0 29.1 1.3e-05 24.8 19.5 3.2 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|20093146|ref|NP_619221.1| - 0.0015 17.7 30.1 0.0015 17.7 30.1 2.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|20093146|ref|NP_619221.1| - 0.0046 16.9 23.9 0.0051 16.8 17.4 3.2 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|20093146|ref|NP_619221.1| - 0.023 14.1 35.0 0.0088 15.5 27.6 3.2 2 1 1 3 3 3 0 ABC-2 type transporter Peptidase_C28 PF05408.11 gi|20093146|ref|NP_619221.1| - 0.079 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Foot-and-mouth virus L-proteinase DUF4064 PF13273.6 gi|20093146|ref|NP_619221.1| - 1.2 9.4 26.2 0.69 10.2 12.5 4.2 4 1 0 4 4 4 0 Protein of unknown function (DUF4064) EI24 PF07264.11 gi|20093146|ref|NP_619221.1| - 2.9 8.1 13.3 4.3 7.5 9.7 2.8 2 1 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) ABC_tran PF00005.27 gi|20093147|ref|NP_619222.1| - 1.9e-32 112.6 0.3 5.9e-31 107.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|20093147|ref|NP_619222.1| - 1.1e-09 38.6 1.3 2.4e-06 27.6 0.0 2.6 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20093147|ref|NP_619222.1| - 0.0061 17.1 3.5 0.027 15.0 3.5 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|20093147|ref|NP_619222.1| - 0.014 15.9 0.9 0.12 12.7 0.9 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|20093147|ref|NP_619222.1| - 0.067 12.8 0.5 0.17 11.5 0.5 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|20093147|ref|NP_619222.1| - 0.097 12.4 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20093147|ref|NP_619222.1| - 0.13 12.2 0.9 0.28 11.1 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase PIN_12 PF16289.5 gi|20093147|ref|NP_619222.1| - 0.57 10.7 5.7 0.23 11.9 2.4 1.9 2 1 0 2 2 2 0 PIN domain NPCBM_assoc PF10633.9 gi|20093148|ref|NP_619223.1| - 2.6e-08 34.0 0.0 1.1e-05 25.5 0.0 2.7 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4625 PF15418.6 gi|20093148|ref|NP_619223.1| - 1.8e-05 25.0 0.7 0.42 10.9 0.0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF4625) CARDB PF07705.11 gi|20093148|ref|NP_619223.1| - 0.0004 20.6 0.6 0.34 11.2 0.1 2.5 2 0 0 2 2 2 2 CARDB MG2 PF01835.19 gi|20093148|ref|NP_619223.1| - 0.0038 17.6 0.0 2.6 8.6 0.0 3.1 3 0 0 3 3 3 1 MG2 domain SNARE PF05739.19 gi|20093148|ref|NP_619223.1| - 0.018 15.0 0.1 0.018 15.0 0.1 1.6 2 0 0 2 2 2 0 SNARE domain DUF916 PF06030.12 gi|20093148|ref|NP_619223.1| - 0.032 14.3 0.5 6.3 6.9 0.0 3.3 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF916) DUF4051 PF13260.6 gi|20093148|ref|NP_619223.1| - 0.05 13.3 0.7 0.099 12.4 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) Wzy_C PF04932.15 gi|20093148|ref|NP_619223.1| - 0.1 12.2 2.2 3.9 7.1 0.1 2.2 2 0 0 2 2 2 0 O-Antigen ligase Insulin_TMD PF17870.1 gi|20093148|ref|NP_619223.1| - 0.51 10.4 2.8 1.3 9.1 2.8 1.7 1 0 0 1 1 1 0 Insulin receptor trans-membrane segment PAS_3 PF08447.12 gi|20093149|ref|NP_619224.1| - 1.4e-38 131.0 1.4 9e-19 67.6 0.1 2.9 3 0 0 3 3 3 2 PAS fold DUF2111 PF09884.9 gi|20093149|ref|NP_619224.1| - 7.3e-33 112.5 0.9 3.7e-32 110.2 0.6 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2111) PAS PF00989.25 gi|20093149|ref|NP_619224.1| - 4.3e-12 46.0 1.3 1.8e-05 24.7 0.1 3.0 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.6 gi|20093149|ref|NP_619224.1| - 7.2e-12 45.8 0.0 9.3e-10 38.9 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|20093149|ref|NP_619224.1| - 7.8e-09 35.7 1.7 0.021 15.1 0.1 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|20093149|ref|NP_619224.1| - 7.3e-07 29.4 0.1 0.027 14.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_11 PF14598.6 gi|20093149|ref|NP_619224.1| - 0.00017 21.7 0.0 0.19 11.9 0.0 2.4 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|20093149|ref|NP_619224.1| - 0.002 18.8 0.0 0.013 16.2 0.0 2.2 2 0 0 2 2 2 1 GAF domain VanY PF02557.17 gi|20093149|ref|NP_619224.1| - 0.0048 16.7 0.1 0.95 9.3 0.0 2.6 3 0 0 3 3 3 1 D-alanyl-D-alanine carboxypeptidase GAF_3 PF13492.6 gi|20093149|ref|NP_619224.1| - 0.03 14.6 0.0 0.096 13.0 0.0 1.8 2 0 0 2 2 2 0 GAF domain Melibiase_2_C PF17450.2 gi|20093149|ref|NP_619224.1| - 0.11 12.8 0.0 7.7 6.8 0.0 2.7 2 0 0 2 2 2 0 Alpha galactosidase A C-terminal beta sandwich domain NosD PF05048.13 gi|20093150|ref|NP_619225.1| - 1e-82 277.1 83.5 1e-37 129.7 28.5 4.1 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20093150|ref|NP_619225.1| - 1.1e-49 168.4 91.5 9.3e-19 67.8 14.8 4.1 1 1 3 4 4 4 4 Right handed beta helix region B12-binding PF02310.19 gi|20093151|ref|NP_619226.1| - 5.3e-21 74.9 0.4 7.3e-21 74.4 0.4 1.1 1 0 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.6 gi|20093151|ref|NP_619226.1| - 0.00036 20.3 0.5 0.00045 20.0 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein PTS_IIB PF02302.17 gi|20093151|ref|NP_619226.1| - 0.0051 17.5 2.2 0.2 12.4 0.1 2.3 1 1 1 2 2 2 2 PTS system, Lactose/Cellobiose specific IIB subunit ABC2_membrane_3 PF12698.7 gi|20093152|ref|NP_619227.1| - 9.3e-46 156.5 19.5 1.1e-45 156.3 19.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|20093152|ref|NP_619227.1| - 9.4e-18 64.5 8.9 2.3e-17 63.2 8.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|20093152|ref|NP_619227.1| - 3.3e-06 26.7 20.4 3.3e-06 26.7 20.4 2.7 2 1 0 2 2 2 1 ABC-2 type transporter Git3 PF11710.8 gi|20093152|ref|NP_619227.1| - 0.00083 19.2 4.0 0.11 12.3 3.1 2.5 2 0 0 2 2 2 2 G protein-coupled glucose receptor regulating Gpa2 ABC2_membrane_4 PF12730.7 gi|20093152|ref|NP_619227.1| - 0.014 15.4 18.6 0.1 12.6 8.2 3.0 2 1 0 3 3 3 0 ABC-2 family transporter protein DUF1449 PF07290.11 gi|20093152|ref|NP_619227.1| - 0.034 13.8 0.1 0.034 13.8 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1449) ABC_tran PF00005.27 gi|20093153|ref|NP_619228.1| - 3.2e-28 98.9 0.0 7.9e-28 97.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.6 gi|20093153|ref|NP_619228.1| - 1.4e-16 61.0 0.2 4.9e-16 59.2 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|20093153|ref|NP_619228.1| - 2.9e-12 47.0 1.0 2e-05 24.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|20093153|ref|NP_619228.1| - 0.00023 21.6 0.1 0.00059 20.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|20093153|ref|NP_619228.1| - 0.00076 19.2 0.0 0.0034 17.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|20093153|ref|NP_619228.1| - 0.0017 18.3 0.3 0.016 15.1 0.0 2.5 3 0 0 3 3 3 1 RsgA GTPase AAA_22 PF13401.6 gi|20093153|ref|NP_619228.1| - 0.0024 18.1 0.3 0.032 14.5 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|20093153|ref|NP_619228.1| - 0.0037 17.8 6.3 0.02 15.4 5.5 2.4 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|20093153|ref|NP_619228.1| - 0.0061 16.0 0.1 1.3 8.4 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|20093153|ref|NP_619228.1| - 0.024 14.4 0.2 9 6.0 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|20093153|ref|NP_619228.1| - 0.025 14.3 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|20093153|ref|NP_619228.1| - 0.034 12.8 0.1 0.91 8.1 0.0 2.2 1 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20093153|ref|NP_619228.1| - 0.035 14.5 0.1 0.63 10.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|20093153|ref|NP_619228.1| - 0.038 13.9 0.4 1.6 8.6 0.0 2.6 2 1 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|20093153|ref|NP_619228.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|20093153|ref|NP_619228.1| - 0.06 13.8 0.3 0.24 11.8 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|20093153|ref|NP_619228.1| - 0.085 12.9 0.0 0.29 11.2 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|20093153|ref|NP_619228.1| - 0.1 12.3 0.1 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|20093153|ref|NP_619228.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_14 PF13173.6 gi|20093153|ref|NP_619228.1| - 0.16 12.0 0.9 7.4 6.6 0.0 3.2 3 1 0 3 3 3 0 AAA domain cobW PF02492.19 gi|20093153|ref|NP_619228.1| - 0.27 10.8 1.9 0.36 10.4 0.1 2.2 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain RibD_C PF01872.17 gi|20093154|ref|NP_619229.1| - 8.8e-13 48.5 0.0 3.4e-12 46.6 0.0 1.7 1 1 0 1 1 1 1 RibD C-terminal domain IspD PF01128.19 gi|20093154|ref|NP_619229.1| - 0.041 13.6 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Proton_antipo_M PF00361.20 gi|20093155|ref|NP_619230.1| - 3.8e-64 216.7 23.3 3.8e-64 216.7 23.3 2.3 2 2 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|20093155|ref|NP_619230.1| - 0.001 19.1 1.2 0.0063 16.6 0.0 2.9 1 1 1 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdh PF00146.21 gi|20093156|ref|NP_619231.1| - 4.2e-33 114.9 21.2 5.1e-33 114.6 21.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|20093158|ref|NP_619233.1| - 6.1e-48 163.5 24.5 6.1e-48 163.5 24.5 2.4 3 0 0 3 3 3 1 Proton-conducting membrane transporter DUF2235 PF09994.9 gi|20093158|ref|NP_619233.1| - 0.15 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) Complex1_49kDa PF00346.19 gi|20093159|ref|NP_619234.1| - 7.2e-40 136.8 0.0 1.6e-39 135.7 0.0 1.6 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|20093159|ref|NP_619234.1| - 1.4e-16 61.2 0.0 2.4e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|20093159|ref|NP_619234.1| - 1.8e-08 33.7 0.1 0.00016 20.7 0.1 2.1 2 0 0 2 2 2 2 Nickel-dependent hydrogenase AlaE PF06610.13 gi|20093159|ref|NP_619234.1| - 0.035 14.1 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 L-alanine exporter Oxidored_q6 PF01058.22 gi|20093160|ref|NP_619235.1| - 8.3e-23 80.6 0.0 1.1e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Methyltransf_11 PF08241.12 gi|20093161|ref|NP_619236.1| - 5.4e-25 87.9 0.0 9.3e-25 87.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20093161|ref|NP_619236.1| - 1.4e-23 83.4 0.0 2.6e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093161|ref|NP_619236.1| - 1.5e-21 76.8 0.0 2e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093161|ref|NP_619236.1| - 1.3e-15 57.3 0.0 2.3e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|20093161|ref|NP_619236.1| - 4.1e-14 53.1 0.0 6.7e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20093161|ref|NP_619236.1| - 1.3e-11 44.6 0.0 2e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|20093161|ref|NP_619236.1| - 1.9e-07 31.1 0.0 2.6e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|20093161|ref|NP_619236.1| - 1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|20093161|ref|NP_619236.1| - 1.1e-05 24.9 0.0 1.5e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|20093161|ref|NP_619236.1| - 2.5e-05 24.0 0.1 5.6e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.7 gi|20093161|ref|NP_619236.1| - 3.2e-05 23.9 0.0 5.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20093161|ref|NP_619236.1| - 4.3e-05 23.1 0.0 6.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|20093161|ref|NP_619236.1| - 5.3e-05 22.7 0.0 8.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Pox_MCEL PF03291.16 gi|20093161|ref|NP_619236.1| - 0.00022 20.5 1.1 0.00028 20.1 0.1 1.6 2 0 0 2 2 2 1 mRNA capping enzyme UPF0020 PF01170.18 gi|20093161|ref|NP_619236.1| - 0.00033 20.4 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|20093161|ref|NP_619236.1| - 0.00038 20.5 0.0 0.00064 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|20093161|ref|NP_619236.1| - 0.0007 18.8 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|20093161|ref|NP_619236.1| - 0.0051 17.8 0.0 0.0087 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|20093161|ref|NP_619236.1| - 0.0083 16.1 0.0 0.016 15.2 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase UPF0146 PF03686.13 gi|20093161|ref|NP_619236.1| - 0.036 13.9 0.1 0.063 13.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) AlaDh_PNT_C PF01262.21 gi|20093161|ref|NP_619236.1| - 0.13 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1724 PF08350.10 gi|20093162|ref|NP_619237.1| - 5.9e-23 80.8 0.6 1.2e-22 79.7 0.6 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.12 gi|20093162|ref|NP_619237.1| - 0.0013 18.6 0.1 0.0027 17.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|20093162|ref|NP_619237.1| - 0.011 15.6 0.1 0.021 14.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|20093162|ref|NP_619237.1| - 0.024 14.5 0.1 0.058 13.3 0.1 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB JIP_LZII PF16471.5 gi|20093162|ref|NP_619237.1| - 0.067 13.4 0.3 15 5.9 0.1 2.6 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II HTH_27 PF13463.6 gi|20093162|ref|NP_619237.1| - 0.075 13.5 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.10 gi|20093162|ref|NP_619237.1| - 0.1 12.5 1.3 0.76 9.7 0.1 2.3 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Response_reg PF00072.24 gi|20093163|ref|NP_619238.1| - 7.8e-30 103.3 0.6 8.7e-30 103.2 0.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ATP-synt_F PF01990.17 gi|20093163|ref|NP_619238.1| - 0.11 12.8 0.2 0.37 11.2 0.2 1.9 1 1 0 1 1 1 0 ATP synthase (F/14-kDa) subunit NCD1 PF04904.13 gi|20093163|ref|NP_619238.1| - 0.13 12.3 0.1 8.1 6.5 0.0 2.1 2 0 0 2 2 2 0 NAB conserved region 1 (NCD1) Response_reg PF00072.24 gi|20093164|ref|NP_619239.1| - 3.9e-36 123.6 0.7 1.1e-16 61.0 0.1 2.7 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 gi|20093164|ref|NP_619239.1| - 2.8e-32 111.5 0.0 7.3e-32 110.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|20093164|ref|NP_619239.1| - 1.9e-19 69.4 0.4 8.9e-19 67.3 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain CHASE4 PF05228.13 gi|20093164|ref|NP_619239.1| - 4.9e-19 68.9 0.0 1.4e-17 64.1 0.0 2.6 3 0 0 3 3 3 1 CHASE4 domain PAS_4 PF08448.10 gi|20093164|ref|NP_619239.1| - 1.8e-12 47.5 0.0 4e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|20093164|ref|NP_619239.1| - 9.4e-07 28.8 0.0 2.3e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|20093164|ref|NP_619239.1| - 6.1e-06 26.4 0.0 2.3e-05 24.6 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.6 gi|20093164|ref|NP_619239.1| - 0.00097 19.7 0.0 0.0027 18.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain dCache_3 PF14827.6 gi|20093164|ref|NP_619239.1| - 0.002 17.8 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase HAMP PF00672.25 gi|20093164|ref|NP_619239.1| - 0.004 17.5 0.1 0.013 15.8 0.1 1.9 2 0 0 2 2 1 1 HAMP domain HATPase_c_3 PF13589.6 gi|20093164|ref|NP_619239.1| - 0.012 15.5 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|20093164|ref|NP_619239.1| - 0.012 15.5 0.0 0.03 14.2 0.0 1.7 1 0 0 1 1 1 0 GHKL domain Thioredoxin_6 PF13848.6 gi|20093164|ref|NP_619239.1| - 0.014 15.3 0.0 0.25 11.2 0.0 2.7 3 0 0 3 3 3 0 Thioredoxin-like domain sCache_3_2 PF17203.4 gi|20093164|ref|NP_619239.1| - 0.036 14.2 0.0 2.7 8.1 0.0 2.6 2 1 0 2 2 2 0 Single cache domain 3 PAS_7 PF12860.7 gi|20093164|ref|NP_619239.1| - 0.14 12.3 0.0 0.53 10.5 0.0 2.1 2 1 0 2 2 1 0 PAS fold E1-E2_ATPase PF00122.20 gi|20093165|ref|NP_619240.1| - 1.7e-53 180.8 3.4 8.4e-53 178.6 0.3 3.1 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|20093165|ref|NP_619240.1| - 2.3e-45 154.5 3.1 2.3e-45 154.5 3.1 2.4 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|20093165|ref|NP_619240.1| - 1.3e-23 84.4 0.4 2.1e-22 80.5 0.4 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|20093165|ref|NP_619240.1| - 1.3e-18 66.8 0.0 2.6e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|20093165|ref|NP_619240.1| - 2.8e-18 65.4 0.7 7.2e-18 64.0 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|20093165|ref|NP_619240.1| - 8.2e-10 38.9 1.4 1.1e-05 25.3 1.6 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|20093165|ref|NP_619240.1| - 5.9e-06 26.8 0.0 2.2e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase URO-D PF01208.17 gi|20093166|ref|NP_619241.1| - 1.4e-86 290.8 0.1 1.5e-86 290.7 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RACo_C_ter PF14574.6 gi|20093167|ref|NP_619242.1| - 7.7e-69 231.6 5.7 6.5e-68 228.6 6.3 2.0 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|20093167|ref|NP_619242.1| - 1.9e-09 37.4 0.0 6.5e-09 35.7 0.0 2.0 1 0 0 1 1 1 1 RACo middle region Fer4_7 PF12838.7 gi|20093167|ref|NP_619242.1| - 2.3e-06 28.1 22.6 0.00027 21.5 11.8 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20093167|ref|NP_619242.1| - 1e-05 25.6 10.0 2.2e-05 24.6 10.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20093167|ref|NP_619242.1| - 2.5e-05 24.1 12.0 0.004 17.2 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20093167|ref|NP_619242.1| - 2.5e-05 23.9 3.8 2.5e-05 23.9 3.8 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|20093167|ref|NP_619242.1| - 4.4e-05 24.3 9.9 0.0008 20.3 2.3 2.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|20093167|ref|NP_619242.1| - 0.00023 21.2 11.9 0.001 19.2 2.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20093167|ref|NP_619242.1| - 0.00041 20.7 3.1 0.0062 16.9 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093167|ref|NP_619242.1| - 0.00071 20.1 5.6 0.0072 16.9 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20093167|ref|NP_619242.1| - 0.00095 19.1 11.8 0.06 13.5 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20093167|ref|NP_619242.1| - 0.001 19.1 12.7 0.0046 17.1 12.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|20093167|ref|NP_619242.1| - 0.0028 17.8 3.5 0.0066 16.6 3.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20093167|ref|NP_619242.1| - 0.011 16.2 2.7 0.011 16.2 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20093167|ref|NP_619242.1| - 0.03 15.3 18.3 0.062 14.3 6.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20093167|ref|NP_619242.1| - 1 9.5 10.0 3.7 7.8 10.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain cobW PF02492.19 gi|20093168|ref|NP_619243.1| - 6.8e-38 130.0 1.2 6.8e-38 130.0 1.2 1.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|20093168|ref|NP_619243.1| - 0.00074 19.6 3.3 0.002 18.2 3.3 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20093168|ref|NP_619243.1| - 0.00083 19.3 0.2 0.0019 18.1 0.2 1.6 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|20093168|ref|NP_619243.1| - 0.002 17.8 1.7 0.003 17.2 0.7 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|20093168|ref|NP_619243.1| - 0.0085 15.1 0.4 0.016 14.2 0.4 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|20093168|ref|NP_619243.1| - 0.038 13.4 0.0 0.11 11.9 0.0 1.8 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.14 gi|20093168|ref|NP_619243.1| - 1.9 8.4 8.4 1.2 9.0 0.3 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|20093169|ref|NP_619244.1| - 3.6e-36 124.4 1.2 5.6e-36 123.8 1.2 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|20093169|ref|NP_619244.1| - 0.00017 21.3 2.6 0.00095 18.8 0.6 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|20093169|ref|NP_619244.1| - 0.00038 19.5 0.1 0.00077 18.5 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|20093169|ref|NP_619244.1| - 0.00073 19.6 3.7 0.0023 18.0 3.7 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|20093169|ref|NP_619244.1| - 0.00081 19.3 2.1 0.0012 18.8 0.9 2.0 2 1 0 2 2 2 1 AAA domain LpxK PF02606.14 gi|20093169|ref|NP_619244.1| - 0.0069 15.5 0.2 0.014 14.5 0.2 1.5 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase OST_IS PF18246.1 gi|20093169|ref|NP_619244.1| - 0.44 10.9 2.4 20 5.6 0.8 2.8 2 1 0 2 2 2 0 Oligosaccharyltransferase Insert domain KTI12 PF08433.10 gi|20093169|ref|NP_619244.1| - 0.46 9.9 0.1 0.46 9.9 0.1 2.4 3 0 0 3 3 3 0 Chromatin associated protein KTI12 DUF2922 PF11148.8 gi|20093169|ref|NP_619244.1| - 1.8 8.3 6.2 1 9.1 0.1 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2922) SelP_N PF04592.14 gi|20093169|ref|NP_619244.1| - 3.1 7.2 13.5 5.9 6.2 13.5 1.5 1 0 0 1 1 1 0 Selenoprotein P, N terminal region DUF1724 PF08350.10 gi|20093170|ref|NP_619245.1| - 8.8e-24 83.4 0.1 1.6e-23 82.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20093170|ref|NP_619245.1| - 0.0053 16.6 0.0 0.0094 15.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Tropomodulin PF03250.14 gi|20093170|ref|NP_619245.1| - 0.14 12.2 0.2 0.29 11.2 0.1 1.5 2 0 0 2 2 2 0 Tropomodulin URO-D PF01208.17 gi|20093171|ref|NP_619246.1| - 1.1e-42 146.4 0.4 2.1e-42 145.5 0.1 1.5 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|20093171|ref|NP_619246.1| - 1.2e-21 77.0 0.2 4.6e-21 75.1 0.4 1.9 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|20093171|ref|NP_619246.1| - 1.6e-17 63.7 0.9 4.3e-17 62.3 0.9 1.8 1 0 0 1 1 1 1 B12 binding domain Robl_LC7 PF03259.17 gi|20093171|ref|NP_619246.1| - 0.12 12.2 0.1 0.28 11.0 0.1 1.5 1 0 0 1 1 1 0 Roadblock/LC7 domain Cpn60_TCP1 PF00118.24 gi|20093173|ref|NP_619248.1| - 2.2e-130 435.6 8.0 2.5e-130 435.4 8.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dala_Dala_lig_C PF07478.13 gi|20093173|ref|NP_619248.1| - 0.031 13.8 0.0 1.6 8.2 0.0 2.6 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus cobW PF02492.19 gi|20093176|ref|NP_619251.1| - 6.9e-38 130.0 0.1 1.2e-37 129.2 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|20093176|ref|NP_619251.1| - 0.00057 18.9 0.5 0.031 13.2 0.3 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|20093176|ref|NP_619251.1| - 0.0024 17.5 0.2 0.0044 16.7 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|20093176|ref|NP_619251.1| - 0.0037 17.2 0.4 0.01 15.7 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.9 gi|20093176|ref|NP_619251.1| - 0.01 14.8 1.5 0.012 14.6 0.7 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|20093176|ref|NP_619251.1| - 0.011 14.8 0.3 0.019 14.0 0.3 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.17 gi|20093176|ref|NP_619251.1| - 0.028 14.2 0.1 0.12 12.1 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|20093176|ref|NP_619251.1| - 0.042 13.1 0.1 0.08 12.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|20093176|ref|NP_619251.1| - 0.069 13.5 0.4 0.18 12.1 0.4 1.7 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|20093176|ref|NP_619251.1| - 0.075 12.8 0.6 0.19 11.4 0.1 1.9 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|20093176|ref|NP_619251.1| - 0.076 13.3 0.1 0.16 12.3 0.1 1.7 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|20093176|ref|NP_619251.1| - 0.076 12.5 0.5 4.6 6.7 0.1 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_30 PF13604.6 gi|20093176|ref|NP_619251.1| - 0.096 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|20093176|ref|NP_619251.1| - 0.18 11.8 0.3 0.33 10.9 0.3 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CbiA PF01656.23 gi|20093176|ref|NP_619251.1| - 0.5 10.4 2.6 0.99 9.5 1.4 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain B12-binding PF02310.19 gi|20093178|ref|NP_619253.1| - 2.1e-19 69.7 0.4 3.4e-19 69.0 0.4 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|20093178|ref|NP_619253.1| - 2e-16 60.2 0.2 6.3e-16 58.6 0.1 1.9 2 0 0 2 2 2 1 B12 binding domain Cu2_monoox_C PF03712.15 gi|20093178|ref|NP_619253.1| - 0.0089 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Copper type II ascorbate-dependent monooxygenase, C-terminal domain Mut7-C PF01927.16 gi|20093178|ref|NP_619253.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain MtaB PF12176.8 gi|20093179|ref|NP_619254.1| - 4.9e-233 773.9 7.2 5.6e-233 773.8 7.2 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit DUF1493 PF07377.12 gi|20093179|ref|NP_619254.1| - 0.091 13.2 0.5 1.6 9.3 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1493) Gpr1_Fun34_YaaH PF01184.19 gi|20093180|ref|NP_619255.1| - 2.6e-31 108.9 30.2 3.1e-31 108.6 30.2 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DIM PF08194.12 gi|20093180|ref|NP_619255.1| - 0.097 12.9 2.1 0.58 10.4 2.1 2.4 1 0 0 1 1 1 0 DIM protein Cation_efflux PF01545.21 gi|20093181|ref|NP_619256.1| - 1.1e-21 77.6 5.2 1.3e-21 77.3 5.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|20093181|ref|NP_619256.1| - 5.5e-15 55.2 0.0 8.4e-15 54.7 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Hydantoinase_A PF01968.18 gi|20093182|ref|NP_619257.1| - 1.4e-33 116.4 1.0 1.3e-31 110.0 0.1 3.0 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20093182|ref|NP_619257.1| - 1.4e-31 109.5 1.9 6.3e-27 94.4 0.3 3.5 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20093182|ref|NP_619257.1| - 4.5e-06 25.5 1.1 0.028 13.1 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|20093182|ref|NP_619257.1| - 0.00068 19.2 0.5 0.49 9.8 0.0 3.5 4 0 0 4 4 4 1 BadF/BadG/BcrA/BcrD ATPase family EutA PF06277.11 gi|20093182|ref|NP_619257.1| - 0.009 14.9 0.0 0.42 9.4 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA ROK PF00480.20 gi|20093182|ref|NP_619257.1| - 0.023 14.2 0.1 0.062 12.8 0.0 1.8 2 0 0 2 2 2 0 ROK family FtsA PF14450.6 gi|20093182|ref|NP_619257.1| - 0.1 13.1 0.3 6.1 7.3 0.0 2.9 2 0 0 2 2 2 0 Cell division protein FtsA Hydant_A_N PF05378.13 gi|20093183|ref|NP_619258.1| - 2.8e-34 118.4 1.1 1.8e-29 102.7 0.1 3.5 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|20093183|ref|NP_619258.1| - 6.4e-31 107.7 0.8 5.1e-30 104.7 0.0 2.4 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|20093183|ref|NP_619258.1| - 6.8e-07 28.2 1.0 0.00036 19.3 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|20093183|ref|NP_619258.1| - 0.0031 17.1 0.0 0.23 10.9 0.0 2.4 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|20093183|ref|NP_619258.1| - 0.0052 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 ROK family FtsA PF14450.6 gi|20093183|ref|NP_619258.1| - 0.011 16.1 1.4 2.4 8.6 0.2 2.8 1 1 1 2 2 2 0 Cell division protein FtsA DDR PF08841.10 gi|20093183|ref|NP_619258.1| - 0.15 11.1 0.1 0.48 9.4 0.1 1.8 2 0 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain DprA_WH PF17782.1 gi|20093183|ref|NP_619258.1| - 0.16 12.1 0.0 26 5.0 0.0 2.8 2 1 1 3 3 3 0 DprA winged helix domain DUF1724 PF08350.10 gi|20093184|ref|NP_619259.1| - 3.2e-23 81.6 0.1 6e-23 80.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|20093184|ref|NP_619259.1| - 0.00095 19.1 1.0 0.004 17.1 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix SurA_N_3 PF13624.6 gi|20093184|ref|NP_619259.1| - 0.033 14.0 0.3 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 SurA N-terminal domain TrmB PF01978.19 gi|20093184|ref|NP_619259.1| - 0.06 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|20093184|ref|NP_619259.1| - 0.094 12.8 0.0 7.2 6.8 0.0 2.7 2 0 0 2 2 2 0 HemN C-terminal domain AraC_binding PF02311.19 gi|20093184|ref|NP_619259.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain DUF3014 PF11219.8 gi|20093184|ref|NP_619259.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3014) MarR PF01047.22 gi|20093184|ref|NP_619259.1| - 0.16 11.9 0.3 0.43 10.6 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|20093184|ref|NP_619259.1| - 0.17 12.4 0.1 0.38 11.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1724 PF08350.10 gi|20093185|ref|NP_619260.1| - 7.2e-24 83.7 0.8 2.1e-23 82.2 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20093185|ref|NP_619260.1| - 0.0008 19.2 0.3 0.0017 18.2 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20093185|ref|NP_619260.1| - 0.035 14.2 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ParcG PF10274.9 gi|20093185|ref|NP_619260.1| - 0.04 14.0 0.1 0.076 13.1 0.1 1.5 1 0 0 1 1 1 0 Parkin co-regulated protein HTH_27 PF13463.6 gi|20093185|ref|NP_619260.1| - 0.11 13.0 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Prismane PF03063.20 gi|20093186|ref|NP_619261.1| - 1e-117 394.0 3.9 1.9e-99 333.7 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_21 PF14697.6 gi|20093186|ref|NP_619261.1| - 3.9e-07 30.1 7.1 3.9e-07 30.1 7.1 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20093186|ref|NP_619261.1| - 5.2e-07 29.7 8.3 5.2e-07 29.7 8.3 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093186|ref|NP_619261.1| - 2.7e-05 24.6 9.6 2.7e-05 24.6 9.6 2.7 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20093186|ref|NP_619261.1| - 0.00044 21.0 4.7 0.099 13.5 0.6 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|20093186|ref|NP_619261.1| - 0.00049 19.8 25.3 0.00068 19.3 3.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|20093186|ref|NP_619261.1| - 0.00054 20.4 9.3 0.00054 20.4 9.3 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20093186|ref|NP_619261.1| - 0.0011 19.0 3.3 0.0011 19.0 3.3 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|20093186|ref|NP_619261.1| - 0.0017 18.8 0.1 0.0017 18.8 0.1 3.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20093186|ref|NP_619261.1| - 0.0032 17.5 13.8 0.0032 17.5 13.8 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20093186|ref|NP_619261.1| - 0.0071 16.4 22.4 0.03 14.4 1.0 4.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|20093186|ref|NP_619261.1| - 0.035 14.6 1.2 0.035 14.6 1.2 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20093186|ref|NP_619261.1| - 0.039 14.2 8.0 0.1 12.8 0.4 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF1890 PF09001.11 gi|20093186|ref|NP_619261.1| - 0.05 14.0 0.0 2.3 8.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) VRR_NUC PF08774.11 gi|20093186|ref|NP_619261.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 VRR-NUC domain Fer4_20 PF14691.6 gi|20093186|ref|NP_619261.1| - 0.42 10.4 7.0 9.8 6.0 7.2 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|20093186|ref|NP_619261.1| - 2.2 8.9 9.7 1.6 9.3 0.8 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Y_Y_Y PF07495.13 gi|20093187|ref|NP_619262.1| - 0.066 13.2 0.3 0.14 12.1 0.2 1.6 2 0 0 2 2 2 0 Y_Y_Y domain SH3_1 PF00018.28 gi|20093187|ref|NP_619262.1| - 0.091 12.4 0.1 1.3 8.7 0.1 2.3 1 1 0 1 1 1 0 SH3 domain MMR_HSR1_C PF08438.10 gi|20093188|ref|NP_619263.1| - 1e-33 116.3 0.0 1.7e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|20093188|ref|NP_619263.1| - 2e-19 69.7 0.0 2.1e-18 66.4 0.0 2.3 2 1 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|20093188|ref|NP_619263.1| - 7.3e-14 51.6 0.0 1.9e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|20093188|ref|NP_619263.1| - 5.9e-09 35.6 0.2 4.9e-07 29.4 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|20093188|ref|NP_619263.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Prenyltransf PF01255.19 gi|20093189|ref|NP_619264.1| - 9.3e-28 97.3 0.0 5.1e-27 94.9 0.0 2.0 1 1 1 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF1922 PF09082.10 gi|20093190|ref|NP_619265.1| - 0.0024 18.1 1.2 0.0047 17.2 1.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Zn_Tnp_IS1595 PF12760.7 gi|20093190|ref|NP_619265.1| - 0.0027 17.6 2.0 0.0048 16.8 2.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|20093190|ref|NP_619265.1| - 0.005 16.5 0.3 0.011 15.4 0.3 1.6 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|20093190|ref|NP_619265.1| - 0.014 14.9 0.1 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|20093190|ref|NP_619265.1| - 0.014 15.1 1.6 0.025 14.3 1.6 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 zinc-ribbons_6 PF07191.12 gi|20093190|ref|NP_619265.1| - 0.016 15.1 0.6 0.028 14.4 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|20093190|ref|NP_619265.1| - 0.032 14.3 0.6 0.059 13.4 0.6 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|20093190|ref|NP_619265.1| - 0.036 13.7 2.6 0.065 12.9 2.6 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|20093190|ref|NP_619265.1| - 0.043 13.8 0.6 0.088 12.8 0.6 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|20093190|ref|NP_619265.1| - 0.044 13.5 0.3 6.9 6.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|20093190|ref|NP_619265.1| - 0.075 12.6 0.7 1.6 8.4 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF655 PF04919.12 gi|20093190|ref|NP_619265.1| - 0.093 12.7 0.0 0.71 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF655) zf-ribbon_3 PF13248.6 gi|20093190|ref|NP_619265.1| - 0.11 11.9 0.6 6 6.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|20093190|ref|NP_619265.1| - 0.21 11.6 1.6 0.26 11.3 0.5 1.7 1 1 1 2 2 2 0 BED zinc finger OrfB_Zn_ribbon PF07282.11 gi|20093190|ref|NP_619265.1| - 0.29 11.1 2.6 0.46 10.4 1.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|20093190|ref|NP_619265.1| - 1.1 9.4 4.0 7.8 6.7 3.8 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|20093190|ref|NP_619265.1| - 2.2 8.3 6.2 12 5.9 6.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|20093190|ref|NP_619265.1| - 3.9 7.6 7.7 3.5 7.8 0.1 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain NRD1_2 PF01995.16 gi|20093191|ref|NP_619266.1| - 5.7e-95 317.1 0.3 8.5e-95 316.6 0.3 1.3 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|20093191|ref|NP_619266.1| - 1.1e-31 108.5 0.5 2.2e-31 107.6 0.5 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.6 gi|20093191|ref|NP_619266.1| - 0.027 14.6 0.4 0.049 13.8 0.4 1.4 1 0 0 1 1 1 0 HTH-like domain HTH_20 PF12840.7 gi|20093191|ref|NP_619266.1| - 0.2 11.7 0.0 0.52 10.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.27 gi|20093192|ref|NP_619267.1| - 2.9e-11 43.7 0.0 4.7e-11 43.1 0.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20093192|ref|NP_619267.1| - 1.8e-08 34.1 0.0 2.6e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|20093192|ref|NP_619267.1| - 0.0039 16.6 0.0 0.0059 16.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain ABC_tran PF00005.27 gi|20093193|ref|NP_619268.1| - 1.1e-20 74.6 0.0 2.6e-20 73.3 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|20093193|ref|NP_619268.1| - 1.5e-07 31.5 0.0 0.00053 19.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20093193|ref|NP_619268.1| - 2.7e-05 23.7 0.0 0.0052 16.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|20093193|ref|NP_619268.1| - 0.0015 19.0 0.1 0.0037 17.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|20093193|ref|NP_619268.1| - 0.012 15.4 0.5 0.023 14.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20093193|ref|NP_619268.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|20093193|ref|NP_619268.1| - 0.026 14.1 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|20093193|ref|NP_619268.1| - 0.03 13.0 0.0 0.041 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain EF-hand_10 PF14788.6 gi|20093193|ref|NP_619268.1| - 0.041 13.7 0.0 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 EF hand ATPase_2 PF01637.18 gi|20093193|ref|NP_619268.1| - 0.067 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|20093193|ref|NP_619268.1| - 0.074 12.7 0.0 0.19 11.4 0.0 1.6 1 1 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|20093193|ref|NP_619268.1| - 0.098 12.7 0.0 0.27 11.3 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase UPF0051 PF01458.17 gi|20093194|ref|NP_619269.1| - 1.2e-55 188.6 0.1 2e-55 187.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) TrmB PF01978.19 gi|20093195|ref|NP_619270.1| - 1.9e-06 27.7 0.0 2.5e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|20093195|ref|NP_619270.1| - 1.8e-05 24.9 0.1 4.5e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|20093195|ref|NP_619270.1| - 1.9e-05 24.5 0.0 4e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|20093195|ref|NP_619270.1| - 0.0001 22.2 0.1 0.00022 21.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|20093195|ref|NP_619270.1| - 0.00036 20.0 0.0 0.00072 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|20093195|ref|NP_619270.1| - 0.00059 19.7 0.0 0.00082 19.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|20093195|ref|NP_619270.1| - 0.0016 18.3 0.0 0.0028 17.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_micro PF17007.5 gi|20093195|ref|NP_619270.1| - 0.004 16.1 0.2 0.0044 15.9 0.2 1.1 1 0 0 1 1 1 1 HTH-like Rio2_N PF09202.11 gi|20093195|ref|NP_619270.1| - 0.006 16.8 0.0 0.0092 16.2 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal Penicillinase_R PF03965.16 gi|20093195|ref|NP_619270.1| - 0.0076 16.6 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor SieB PF14163.6 gi|20093195|ref|NP_619270.1| - 0.012 15.1 0.4 0.11 11.9 0.4 2.0 1 1 0 1 1 1 0 Super-infection exclusion protein B TFIIE_alpha PF02002.17 gi|20093195|ref|NP_619270.1| - 0.016 15.1 0.4 0.026 14.4 0.3 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|20093195|ref|NP_619270.1| - 0.018 15.5 0.0 0.026 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|20093195|ref|NP_619270.1| - 0.032 14.2 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain FUR PF01475.19 gi|20093195|ref|NP_619270.1| - 0.065 13.4 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family DUF5081 PF16887.5 gi|20093195|ref|NP_619270.1| - 0.087 11.9 0.1 0.22 10.6 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5081) GntR PF00392.21 gi|20093195|ref|NP_619270.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Swi5 PF07061.11 gi|20093195|ref|NP_619270.1| - 0.15 12.1 2.3 2.8 8.1 0.1 2.3 1 1 0 2 2 2 0 Swi5 Fer4_5 PF12801.7 gi|20093196|ref|NP_619271.1| - 1.6e-14 53.6 12.7 2.1e-12 46.8 3.9 3.4 4 1 0 4 4 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|20093196|ref|NP_619271.1| - 1e-09 38.1 14.8 6.1e-05 22.9 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20093196|ref|NP_619271.1| - 1.5e-09 37.3 21.9 4.9e-06 26.1 3.1 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20093196|ref|NP_619271.1| - 2.6e-08 33.9 18.1 8.2e-05 22.7 3.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093196|ref|NP_619271.1| - 1.1e-07 32.3 16.3 0.001 19.6 2.2 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|20093196|ref|NP_619271.1| - 2.2e-06 27.7 16.8 0.00013 22.0 2.5 2.6 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|20093196|ref|NP_619271.1| - 2.9e-06 27.4 9.2 5.5e-06 26.6 9.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20093196|ref|NP_619271.1| - 3.9e-06 27.7 13.8 0.0037 18.2 2.5 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|20093196|ref|NP_619271.1| - 1e-05 25.3 11.6 0.00018 21.4 0.7 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|20093196|ref|NP_619271.1| - 5.9e-05 23.1 24.5 0.00021 21.3 20.1 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093196|ref|NP_619271.1| - 0.00036 21.0 21.0 0.015 15.8 5.9 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20093196|ref|NP_619271.1| - 0.0012 19.2 28.9 0.0039 17.6 5.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|20093196|ref|NP_619271.1| - 0.0037 18.1 4.5 0.0037 18.1 4.5 3.8 5 0 0 5 5 3 2 4Fe-4S binding domain PhoLip_ATPase_C PF16212.5 gi|20093196|ref|NP_619271.1| - 0.01 15.6 1.0 0.01 15.6 1.0 1.7 2 0 0 2 2 2 0 Phospholipid-translocating P-type ATPase C-terminal Fer4_8 PF13183.6 gi|20093196|ref|NP_619271.1| - 0.027 14.9 20.6 0.28 11.7 5.3 2.7 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|20093196|ref|NP_619271.1| - 0.037 14.6 18.5 0.083 13.4 3.0 2.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|20093196|ref|NP_619271.1| - 0.086 13.7 14.6 1.4 9.8 4.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain YjbT PF17089.5 gi|20093196|ref|NP_619271.1| - 0.11 12.5 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family Fer4_15 PF13459.6 gi|20093196|ref|NP_619271.1| - 0.65 10.8 8.8 4.6 8.1 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_4 PF01565.23 gi|20093197|ref|NP_619272.1| - 3.8e-34 117.4 0.0 7.4e-34 116.5 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.16 gi|20093197|ref|NP_619272.1| - 2.4e-30 104.6 1.7 3.8e-15 55.9 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.6 gi|20093197|ref|NP_619272.1| - 5.7e-09 36.4 7.7 1.8e-08 34.8 7.7 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|20093197|ref|NP_619272.1| - 9e-06 26.0 6.8 2.8e-05 24.5 6.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|20093197|ref|NP_619272.1| - 0.0002 21.1 0.0 0.00097 18.8 0.0 2.1 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain Fer4_9 PF13187.6 gi|20093197|ref|NP_619272.1| - 0.00032 20.8 2.5 0.00032 20.8 2.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093197|ref|NP_619272.1| - 0.00099 19.7 5.9 0.0027 18.3 5.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20093197|ref|NP_619272.1| - 0.1 12.7 10.3 0.43 10.7 9.3 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Isochorismatase PF00857.20 gi|20093198|ref|NP_619273.1| - 3.7e-42 144.5 0.0 4.2e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Cpn60_TCP1 PF00118.24 gi|20093200|ref|NP_619275.1| - 1.8e-177 590.9 20.3 2.2e-177 590.6 20.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF473 PF04322.12 gi|20093201|ref|NP_619276.1| - 5.5e-43 145.6 0.2 6.2e-43 145.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|20093202|ref|NP_619277.1| - 1.8e-51 175.2 0.2 2.1e-51 175.0 0.2 1.0 1 0 0 1 1 1 1 PAC2 family DUF2536 PF10750.9 gi|20093202|ref|NP_619277.1| - 0.04 13.8 0.3 2.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) PK_C PF02887.16 gi|20093203|ref|NP_619278.1| - 1.6e-17 63.8 0.9 2e-17 63.5 0.9 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Asp_Glu_race PF01177.22 gi|20093203|ref|NP_619278.1| - 0.009 15.9 0.1 0.011 15.7 0.1 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase UvsW PF11637.8 gi|20093203|ref|NP_619278.1| - 0.061 13.4 0.5 0.14 12.3 0.5 1.6 1 0 0 1 1 1 0 ATP-dependant DNA helicase UvsW DUF86 PF01934.17 gi|20093204|ref|NP_619279.1| - 5e-24 84.4 0.2 5.6e-24 84.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 U3snoRNP10 PF12397.8 gi|20093204|ref|NP_619279.1| - 0.086 13.2 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 U3 small nucleolar RNA-associated protein 10 Polbeta PF18765.1 gi|20093205|ref|NP_619280.1| - 5.5e-22 77.7 0.2 8.3e-22 77.1 0.2 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|20093205|ref|NP_619280.1| - 6.4e-12 45.6 0.1 8.1e-12 45.3 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain TGT PF01702.18 gi|20093206|ref|NP_619281.1| - 2.1e-87 293.6 0.0 2.7e-87 293.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|20093206|ref|NP_619281.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) UbiA PF01040.18 gi|20093207|ref|NP_619282.1| - 8e-39 133.4 22.1 1e-38 133.1 22.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Lycopene_cycl PF05834.12 gi|20093208|ref|NP_619283.1| - 9e-10 38.1 0.0 1.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|20093208|ref|NP_619283.1| - 3.6e-09 35.8 0.2 7.1e-07 28.3 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|20093208|ref|NP_619283.1| - 5.3e-09 36.1 0.1 0.00012 21.7 0.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|20093208|ref|NP_619283.1| - 3.6e-08 33.0 0.1 0.003 16.9 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|20093208|ref|NP_619283.1| - 1.7e-07 30.9 0.0 0.00023 20.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|20093208|ref|NP_619283.1| - 4.8e-07 29.3 4.5 0.002 17.4 0.0 2.8 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|20093208|ref|NP_619283.1| - 1.3e-05 24.8 0.1 3.5e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|20093208|ref|NP_619283.1| - 0.00032 19.9 0.0 0.00073 18.7 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|20093208|ref|NP_619283.1| - 0.00061 20.0 0.0 0.0018 18.5 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|20093208|ref|NP_619283.1| - 0.0011 19.4 0.0 0.055 14.0 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|20093208|ref|NP_619283.1| - 0.0066 15.6 0.1 0.023 13.8 0.0 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|20093208|ref|NP_619283.1| - 0.01 15.1 0.6 0.019 14.2 0.0 1.7 2 0 0 2 2 2 0 Thi4 family Amino_oxidase PF01593.24 gi|20093208|ref|NP_619283.1| - 0.018 14.3 0.4 0.11 11.7 0.0 2.2 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|20093208|ref|NP_619283.1| - 0.044 13.1 0.5 0.27 10.5 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|20093208|ref|NP_619283.1| - 0.084 11.7 0.0 5.2 5.8 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Radical_SAM PF04055.21 gi|20093209|ref|NP_619284.1| - 8.9e-18 65.2 0.0 1.3e-17 64.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|20093209|ref|NP_619284.1| - 1e-05 25.9 0.3 2.6e-05 24.7 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|20093209|ref|NP_619284.1| - 0.0056 16.8 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|20093209|ref|NP_619284.1| - 0.0062 16.8 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain CobN-Mg_chel PF02514.16 gi|20093210|ref|NP_619285.1| - 0 1155.2 0.0 0 1147.2 0.0 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF2149 PF09919.9 gi|20093211|ref|NP_619286.1| - 2.4e-34 117.4 0.1 2.8e-34 117.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 gi|20093212|ref|NP_619287.1| - 1.1e-10 41.4 3.6 1.4e-10 41.0 0.2 2.2 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.19 gi|20093212|ref|NP_619287.1| - 0.00022 21.1 1.0 0.00023 21.1 0.1 1.6 2 0 0 2 2 2 1 VIT family LRR19-TM PF15176.6 gi|20093212|ref|NP_619287.1| - 0.039 13.9 0.0 0.079 13.0 0.0 1.5 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain LapA_dom PF06305.11 gi|20093212|ref|NP_619287.1| - 0.4 10.5 2.5 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2162 PF09930.9 gi|20093213|ref|NP_619288.1| - 1.1e-65 221.2 22.6 1.2e-65 221.1 22.6 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF3180 PF11377.8 gi|20093213|ref|NP_619288.1| - 7.2 6.8 12.2 1.2 9.3 0.1 3.6 3 2 1 4 4 4 0 Protein of unknown function (DUF3180) DUF2935 PF11155.8 gi|20093214|ref|NP_619289.1| - 0.00081 19.7 5.4 0.11 12.9 0.0 3.0 1 1 1 3 3 3 3 Domain of unknown function (DUF2935) Sec34 PF04136.15 gi|20093214|ref|NP_619289.1| - 0.0084 16.0 5.9 0.0084 16.0 5.9 2.8 1 1 0 2 2 2 1 Sec34-like family DUF3577 PF12101.8 gi|20093214|ref|NP_619289.1| - 0.01 15.6 1.1 0.01 15.6 1.1 2.6 2 2 0 2 2 2 0 Protein of unknown function (DUF3577) CALCOCO1 PF07888.11 gi|20093214|ref|NP_619289.1| - 0.29 10.0 38.6 0.7 8.7 38.3 1.6 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like MAD PF05557.13 gi|20093214|ref|NP_619289.1| - 3.6 5.8 41.0 4.5 5.5 23.2 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein Bul1_C PF04426.12 gi|20093214|ref|NP_619289.1| - 5.6 6.3 21.3 0.62 9.4 2.0 2.7 1 1 0 2 2 2 0 Bul1 C terminus Pepsin-I3 PF06394.13 gi|20093214|ref|NP_619289.1| - 5.8 7.2 7.3 1.2 9.3 0.6 3.1 3 1 0 3 3 3 0 Pepsin inhibitor-3-like repeated domain HAD PF12710.7 gi|20093215|ref|NP_619290.1| - 8.7e-22 78.4 0.1 1.1e-21 78.1 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|20093215|ref|NP_619290.1| - 2.8e-18 67.0 0.4 4.1e-18 66.4 0.4 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|20093215|ref|NP_619290.1| - 6.5e-10 39.2 0.0 4.3e-08 33.2 0.0 2.5 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|20093215|ref|NP_619290.1| - 8.6e-06 26.0 0.4 0.00038 20.6 0.4 2.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|20093215|ref|NP_619290.1| - 1.8e-05 24.3 0.0 0.011 15.2 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase S6PP PF05116.13 gi|20093215|ref|NP_619290.1| - 0.0079 15.7 0.1 0.86 9.1 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase DUF705 PF05152.12 gi|20093215|ref|NP_619290.1| - 0.097 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF705) MTD PF01993.18 gi|20093216|ref|NP_619291.1| - 4.2e-128 426.4 0.7 4.7e-128 426.3 0.7 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase CheD PF03975.13 gi|20093216|ref|NP_619291.1| - 0.097 12.8 0.2 0.29 11.2 0.1 1.8 2 0 0 2 2 2 0 CheD chemotactic sensory transduction DUF2111 PF09884.9 gi|20093217|ref|NP_619292.1| - 1.9e-35 120.8 0.2 3.3e-35 120.0 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) DUF166 PF02593.14 gi|20093218|ref|NP_619293.1| - 1.4e-62 211.1 0.0 1.6e-62 210.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DapB_N PF01113.20 gi|20093218|ref|NP_619293.1| - 0.016 15.3 0.0 0.05 13.7 0.0 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.6 gi|20093218|ref|NP_619293.1| - 0.038 14.5 0.0 0.074 13.5 0.0 1.5 1 1 0 1 1 1 0 CoA binding domain Thymidylate_kin PF02223.17 gi|20093219|ref|NP_619294.1| - 5e-45 153.4 0.0 5.8e-45 153.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|20093219|ref|NP_619294.1| - 1.5e-05 25.6 0.0 3.4e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|20093219|ref|NP_619294.1| - 2.2e-05 24.8 0.0 3e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|20093219|ref|NP_619294.1| - 4.7e-05 23.6 0.0 9.9e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|20093219|ref|NP_619294.1| - 0.00091 19.7 0.0 0.012 16.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|20093219|ref|NP_619294.1| - 0.0053 16.6 0.0 0.01 15.7 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_22 PF13401.6 gi|20093219|ref|NP_619294.1| - 0.017 15.4 0.1 0.044 14.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|20093219|ref|NP_619294.1| - 0.036 14.5 0.0 0.043 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain CPT PF07931.12 gi|20093219|ref|NP_619294.1| - 0.095 12.5 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Cytidylate_kin PF02224.18 gi|20093219|ref|NP_619294.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.5 1 1 0 1 1 1 0 Cytidylate kinase APS_kinase PF01583.20 gi|20093219|ref|NP_619294.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.10 gi|20093219|ref|NP_619294.1| - 0.14 11.6 0.1 0.27 10.6 0.1 1.6 1 1 0 1 1 1 0 Chromatin associated protein KTI12 DUF87 PF01935.17 gi|20093219|ref|NP_619294.1| - 0.15 12.2 0.1 6.7 6.7 0.0 2.6 3 0 0 3 3 3 0 Helicase HerA, central domain His_biosynth PF00977.21 gi|20093221|ref|NP_619296.1| - 8.6e-33 113.7 0.0 1e-32 113.5 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PRAI PF00697.22 gi|20093221|ref|NP_619296.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 4HFCP_synth PF04476.13 gi|20093222|ref|NP_619297.1| - 3.2e-92 308.4 0.0 3.7e-92 308.2 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase YdjM PF04307.14 gi|20093223|ref|NP_619298.1| - 2e-18 66.3 1.1 2.4e-18 66.0 1.1 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF443 PF04276.12 gi|20093223|ref|NP_619298.1| - 0.75 9.6 3.1 0.31 10.8 0.3 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF443) Polysacc_deac_1 PF01522.21 gi|20093226|ref|NP_619301.1| - 7.3e-18 64.7 0.0 1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.8 gi|20093226|ref|NP_619301.1| - 4.9e-09 36.3 0.0 1.1e-08 35.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) DUF2334 PF10096.9 gi|20093226|ref|NP_619301.1| - 0.015 15.0 0.0 0.025 14.2 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Disaggr_repeat PF06848.11 gi|20093228|ref|NP_619303.1| - 5.9e-89 296.5 2.7 9.9e-89 295.8 2.7 1.4 1 0 0 1 1 1 1 Disaggregatase related repeat Pectate_lyase_3 PF12708.7 gi|20093228|ref|NP_619303.1| - 6.4e-16 58.8 10.1 6.4e-16 58.8 10.1 3.0 1 1 1 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|20093228|ref|NP_619303.1| - 5.6e-14 52.3 18.6 5.6e-14 52.3 18.6 3.0 3 0 0 3 3 3 1 Right handed beta helix region Phage_integrase PF00589.22 gi|20093228|ref|NP_619303.1| - 0.11 12.3 0.0 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Phage integrase family Disaggr_repeat PF06848.11 gi|20093230|ref|NP_619305.1| - 3.2e-89 297.4 1.6 6.8e-89 296.3 1.6 1.6 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|20093230|ref|NP_619305.1| - 1.1e-83 279.8 14.7 1.1e-83 279.8 14.7 2.5 2 0 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.6 gi|20093230|ref|NP_619305.1| - 9.7e-17 61.3 47.4 1.4e-12 47.8 28.5 3.2 1 1 1 2 2 2 2 Right handed beta helix region YdjM PF04307.14 gi|20093231|ref|NP_619306.1| - 0.00016 21.0 0.7 0.00028 20.3 0.7 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Glycos_transf_2 PF00535.26 gi|20093232|ref|NP_619307.1| - 1.2e-26 93.5 0.0 1.1e-22 80.7 0.0 2.8 3 1 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|20093232|ref|NP_619307.1| - 1e-07 32.3 0.0 3.5e-05 24.2 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20093232|ref|NP_619307.1| - 7.3e-06 26.0 0.0 8.3e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|20093232|ref|NP_619307.1| - 0.0001 21.9 0.0 0.47 9.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 GFO_IDH_MocA PF01408.22 gi|20093234|ref|NP_619309.1| - 1.5e-28 100.0 0.1 2.4e-28 99.4 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|20093234|ref|NP_619309.1| - 0.0004 20.4 0.0 0.00079 19.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|20093234|ref|NP_619309.1| - 0.0024 18.3 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ASD1 PF08688.10 gi|20093234|ref|NP_619309.1| - 0.061 13.7 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Apx/Shroom domain ASD1 UDPG_MGDP_dh_N PF03721.14 gi|20093234|ref|NP_619309.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.20 gi|20093234|ref|NP_619309.1| - 0.094 12.8 0.2 0.26 11.4 0.2 1.9 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PMT_2 PF13231.6 gi|20093235|ref|NP_619310.1| - 0.0077 16.5 10.4 0.0077 16.5 10.4 4.4 3 3 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Polysacc_synt_3 PF13440.6 gi|20093236|ref|NP_619311.1| - 1.9e-25 89.7 13.0 1.9e-25 89.7 13.0 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|20093236|ref|NP_619311.1| - 7.5e-15 55.0 19.5 7.5e-15 55.0 19.5 3.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|20093236|ref|NP_619311.1| - 1.7e-06 26.9 15.4 1.7e-06 26.9 15.4 2.8 1 1 1 2 2 2 2 Lipid II flippase MurJ Glycos_transf_1 PF00534.20 gi|20093238|ref|NP_619313.1| - 2.6e-32 111.7 0.0 5.3e-32 110.7 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|20093238|ref|NP_619313.1| - 3.4e-31 108.4 0.0 5e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|20093238|ref|NP_619313.1| - 4.5e-17 62.6 0.0 7.1e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|20093238|ref|NP_619313.1| - 1.3e-12 48.0 0.0 2.5e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|20093238|ref|NP_619313.1| - 1.5e-06 28.8 0.0 2.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|20093238|ref|NP_619313.1| - 2.5e-05 24.3 0.0 4.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|20093239|ref|NP_619314.1| - 1.3e-13 51.1 0.0 3.8e-13 49.6 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|20093239|ref|NP_619314.1| - 7.1e-07 29.3 0.0 1.4e-05 25.2 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|20093239|ref|NP_619314.1| - 0.00013 21.9 0.0 0.0075 16.2 0.0 2.1 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|20093239|ref|NP_619314.1| - 0.016 15.7 0.0 0.051 14.1 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 Polysacc_deac_1 PF01522.21 gi|20093240|ref|NP_619315.1| - 0.0051 16.7 0.0 0.021 14.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide deacetylase DUF3362 PF11842.8 gi|20093240|ref|NP_619315.1| - 0.03 14.6 0.0 0.045 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3362) DUF354 PF04007.12 gi|20093241|ref|NP_619316.1| - 7e-23 81.2 0.0 7.9e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|20093241|ref|NP_619316.1| - 0.00021 21.3 0.3 0.00044 20.3 0.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|20093241|ref|NP_619316.1| - 0.00097 19.2 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 UDPG_MGDP_dh_N PF03721.14 gi|20093243|ref|NP_619318.1| - 8e-66 221.2 1.1 1.1e-65 220.7 1.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|20093243|ref|NP_619318.1| - 2.4e-37 127.0 0.1 4.8e-37 126.1 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|20093243|ref|NP_619318.1| - 5.4e-28 97.5 0.1 1.5e-27 96.0 0.1 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|20093243|ref|NP_619318.1| - 1.1e-05 25.4 0.1 2.6e-05 24.2 0.0 1.7 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20093243|ref|NP_619318.1| - 2.9e-05 24.6 0.1 0.031 14.9 0.1 3.9 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|20093243|ref|NP_619318.1| - 0.00016 21.7 0.1 0.00043 20.3 0.0 1.9 2 1 0 2 2 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|20093243|ref|NP_619318.1| - 0.00069 18.9 0.2 0.0029 16.9 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|20093243|ref|NP_619318.1| - 0.0027 18.2 0.2 0.01 16.4 0.1 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|20093243|ref|NP_619318.1| - 0.004 16.6 0.0 0.022 14.1 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|20093243|ref|NP_619318.1| - 0.005 16.2 0.0 0.0088 15.4 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|20093243|ref|NP_619318.1| - 0.0082 16.3 0.1 0.033 14.4 0.0 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|20093243|ref|NP_619318.1| - 0.01 15.5 0.1 0.022 14.4 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|20093243|ref|NP_619318.1| - 0.011 15.6 0.3 0.027 14.3 0.0 1.8 2 0 0 2 2 2 0 Rossmann-like domain TrkA_N PF02254.18 gi|20093243|ref|NP_619318.1| - 0.055 13.7 0.3 0.15 12.3 0.1 1.9 2 0 0 2 2 1 0 TrkA-N domain NAD_binding_11 PF14833.6 gi|20093243|ref|NP_619318.1| - 0.056 13.7 0.7 0.12 12.6 0.1 2.0 2 1 0 2 2 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GFO_IDH_MocA PF01408.22 gi|20093243|ref|NP_619318.1| - 0.056 14.3 0.0 0.17 12.7 0.0 1.9 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_3 PF01494.19 gi|20093243|ref|NP_619318.1| - 0.098 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 gi|20093243|ref|NP_619318.1| - 1.3 9.3 5.1 0.83 9.9 0.2 2.6 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NTP_transferase PF00483.23 gi|20093245|ref|NP_619320.1| - 4.6e-30 105.0 0.0 5.9e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|20093245|ref|NP_619320.1| - 6.2e-09 36.4 0.0 1.4e-08 35.3 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Smr PF01713.21 gi|20093245|ref|NP_619320.1| - 0.0014 18.9 0.0 0.19 12.1 0.0 3.0 3 0 0 3 3 3 1 Smr domain Glycos_transf_2 PF00535.26 gi|20093245|ref|NP_619320.1| - 0.0079 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 gi|20093245|ref|NP_619320.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|20093245|ref|NP_619320.1| - 0.15 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase Epimerase PF01370.21 gi|20093246|ref|NP_619321.1| - 5e-52 176.8 0.0 6.5e-52 176.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|20093246|ref|NP_619321.1| - 5.7e-49 167.3 0.0 1e-48 166.5 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|20093246|ref|NP_619321.1| - 4.9e-20 71.7 0.0 6.4e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|20093246|ref|NP_619321.1| - 1.4e-19 70.4 0.0 1.8e-18 66.7 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|20093246|ref|NP_619321.1| - 9.4e-17 61.0 0.0 1.1e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|20093246|ref|NP_619321.1| - 2.7e-14 53.0 0.3 8.8e-12 44.7 0.3 2.8 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|20093246|ref|NP_619321.1| - 5.5e-13 49.2 0.0 1.4e-12 47.8 0.0 1.7 1 1 1 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|20093246|ref|NP_619321.1| - 2e-07 30.6 0.0 3.4e-06 26.7 0.0 2.4 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|20093246|ref|NP_619321.1| - 4.2e-05 23.2 0.1 0.00022 20.9 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|20093246|ref|NP_619321.1| - 0.015 15.5 0.0 0.03 14.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|20093246|ref|NP_619321.1| - 0.023 14.6 0.0 0.065 13.2 0.0 1.7 1 1 0 1 1 1 0 KR domain Sacchrp_dh_NADP PF03435.18 gi|20093246|ref|NP_619321.1| - 0.061 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|20093246|ref|NP_619321.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF3634 PF12321.8 gi|20093246|ref|NP_619321.1| - 0.14 12.5 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3634) NAD_binding_7 PF13241.6 gi|20093246|ref|NP_619321.1| - 0.16 12.4 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Polysacc_synt_3 PF13440.6 gi|20093247|ref|NP_619322.1| - 7e-23 81.3 18.8 7e-23 81.3 18.8 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|20093247|ref|NP_619322.1| - 4.5e-19 68.9 52.6 1.4e-18 67.3 29.6 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|20093247|ref|NP_619322.1| - 3.6e-18 66.0 21.8 3.6e-18 66.0 21.8 3.3 3 0 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|20093247|ref|NP_619322.1| - 7.1e-10 38.1 44.5 1.1e-09 37.5 44.5 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|20093247|ref|NP_619322.1| - 1.4e-05 24.8 7.0 1.4e-05 24.8 7.0 4.2 3 1 1 4 4 4 2 MatE Epiglycanin_C PF14654.6 gi|20093247|ref|NP_619322.1| - 0.096 12.8 0.3 0.096 12.8 0.3 2.9 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region DUF2613 PF11021.8 gi|20093247|ref|NP_619322.1| - 3.7 7.7 6.1 2 8.6 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) DUF772 PF05598.11 gi|20093248|ref|NP_619323.1| - 3.9e-14 52.4 0.0 6.8e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) rve PF00665.26 gi|20093249|ref|NP_619324.1| - 2.2e-13 50.4 0.0 3.6e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20093249|ref|NP_619324.1| - 2.2e-05 24.1 0.2 5.5e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20093249|ref|NP_619324.1| - 7.7e-05 22.4 0.1 0.0045 16.7 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20093249|ref|NP_619324.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20093249|ref|NP_619324.1| - 0.033 14.3 0.1 0.091 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20093249|ref|NP_619324.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20093249|ref|NP_619324.1| - 0.095 12.5 0.3 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Lsm C-terminal Epimerase PF01370.21 gi|20093250|ref|NP_619325.1| - 1.1e-67 228.1 0.0 1.3e-67 227.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|20093250|ref|NP_619325.1| - 1.5e-59 202.1 0.0 2e-59 201.7 0.0 1.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|20093250|ref|NP_619325.1| - 2.2e-29 102.4 0.0 3.1e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|20093250|ref|NP_619325.1| - 1.5e-26 93.3 0.0 1.7e-25 89.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|20093250|ref|NP_619325.1| - 8.2e-18 64.5 0.0 1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|20093250|ref|NP_619325.1| - 1.3e-15 57.7 0.0 2.2e-15 57.0 0.0 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|20093250|ref|NP_619325.1| - 5.5e-11 42.1 0.1 1.4e-08 34.2 0.0 2.5 1 1 1 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|20093250|ref|NP_619325.1| - 4.8e-10 39.4 0.0 8.3e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|20093250|ref|NP_619325.1| - 6.6e-07 29.0 0.1 2.2e-06 27.3 0.0 1.9 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|20093250|ref|NP_619325.1| - 0.0001 22.2 0.5 0.00087 19.3 0.5 2.3 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|20093250|ref|NP_619325.1| - 0.0015 18.4 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|20093250|ref|NP_619325.1| - 0.0021 17.7 0.1 0.0058 16.2 0.0 1.7 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Pyr_redox PF00070.27 gi|20093250|ref|NP_619325.1| - 0.0061 17.1 0.1 0.18 12.4 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|20093250|ref|NP_619325.1| - 0.016 15.5 0.0 0.032 14.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|20093250|ref|NP_619325.1| - 0.059 13.6 0.0 2.4 8.4 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|20093250|ref|NP_619325.1| - 0.11 12.6 0.1 2.3 8.4 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|20093250|ref|NP_619325.1| - 0.11 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1616 PF07760.11 gi|20093251|ref|NP_619326.1| - 1.1e-98 330.2 0.1 1.4e-98 330.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF872 PF05915.12 gi|20093251|ref|NP_619326.1| - 1.2 9.3 6.1 14 5.9 3.5 2.5 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) CPBP PF02517.16 gi|20093252|ref|NP_619327.1| - 3.8e-18 65.7 6.9 3.8e-18 65.7 6.9 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Y_Y_Y PF07495.13 gi|20093253|ref|NP_619328.1| - 0.079 12.9 0.4 0.16 12.0 0.0 1.7 2 1 0 2 2 2 0 Y_Y_Y domain DUF1624 PF07786.12 gi|20093255|ref|NP_619330.1| - 3.7e-77 258.8 7.2 4.4e-77 258.6 7.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Ribosomal_S17e PF00833.18 gi|20093257|ref|NP_619332.1| - 1.6e-14 53.9 1.6 1.8e-14 53.7 1.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|20093258|ref|NP_619333.1| - 3.6e-97 324.6 0.0 4e-97 324.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|20093258|ref|NP_619333.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG THF_DHG_CYH PF00763.23 gi|20093258|ref|NP_619333.1| - 0.071 13.4 0.0 8.2 6.7 0.0 2.9 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DapB_C PF05173.14 gi|20093259|ref|NP_619334.1| - 8.4e-48 161.4 0.0 1.2e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|20093259|ref|NP_619334.1| - 1.1e-32 112.7 1.2 1.7e-32 112.1 1.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 3Beta_HSD PF01073.19 gi|20093259|ref|NP_619334.1| - 0.021 13.8 0.4 0.027 13.5 0.4 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family OppC_N PF12911.7 gi|20093260|ref|NP_619335.1| - 0.0044 17.0 0.2 0.0062 16.5 0.2 1.3 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C DUF3567 PF12091.8 gi|20093260|ref|NP_619335.1| - 0.13 12.4 0.1 0.19 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) Sigma_reg_N PF13800.6 gi|20093260|ref|NP_619335.1| - 0.18 12.1 0.8 0.35 11.2 0.8 1.4 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Spo7_2_N PF15407.6 gi|20093261|ref|NP_619336.1| - 0.076 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Sporulation protein family 7 DUF4493 PF14900.6 gi|20093262|ref|NP_619337.1| - 0.083 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) BsuPI PF12690.7 gi|20093262|ref|NP_619337.1| - 0.13 12.4 0.0 1.6 8.8 0.0 2.0 2 0 0 2 2 2 0 Intracellular proteinase inhibitor NosD PF05048.13 gi|20093263|ref|NP_619338.1| - 3.2e-19 69.2 8.4 1.4e-18 67.1 8.5 1.8 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20093263|ref|NP_619338.1| - 2.9e-16 59.7 11.2 8.3e-16 58.2 10.7 2.0 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.11 gi|20093263|ref|NP_619338.1| - 4.9e-09 35.9 0.6 0.00089 18.7 0.4 3.7 2 1 0 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|20093263|ref|NP_619338.1| - 0.0045 16.9 1.7 0.049 13.5 1.7 2.3 1 1 0 1 1 1 1 Pectate lyase superfamily protein Pectinesterase PF01095.19 gi|20093263|ref|NP_619338.1| - 0.022 13.5 0.0 0.098 11.4 0.0 1.8 2 0 0 2 2 2 0 Pectinesterase HTH_20 PF12840.7 gi|20093264|ref|NP_619339.1| - 4.1e-12 46.0 0.6 6e-12 45.5 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|20093264|ref|NP_619339.1| - 1.2e-05 24.7 0.5 2.1e-05 23.9 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|20093264|ref|NP_619339.1| - 3.4e-05 23.6 1.4 5.2e-05 23.0 1.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|20093264|ref|NP_619339.1| - 0.00021 21.1 0.1 0.00035 20.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|20093264|ref|NP_619339.1| - 0.002 18.1 0.1 0.0027 17.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|20093264|ref|NP_619339.1| - 0.0029 17.4 0.2 0.0038 17.1 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|20093264|ref|NP_619339.1| - 0.0062 16.4 0.0 0.0087 15.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|20093264|ref|NP_619339.1| - 0.023 14.5 1.2 0.03 14.1 0.3 1.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DUF742 PF05331.11 gi|20093264|ref|NP_619339.1| - 0.086 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Methyltr_RsmF_N PF17125.5 gi|20093264|ref|NP_619339.1| - 0.095 13.2 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF HTH_20 PF12840.7 gi|20093265|ref|NP_619340.1| - 1.1e-06 28.7 0.0 2e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20093265|ref|NP_619340.1| - 0.0031 17.4 0.0 0.0065 16.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PrgI PF12666.7 gi|20093265|ref|NP_619340.1| - 9.8 7.0 10.1 0.29 11.9 2.3 2.3 2 1 0 2 2 2 0 PrgI family protein NosD PF05048.13 gi|20093266|ref|NP_619341.1| - 3.2e-30 105.2 23.2 1.3e-20 73.7 6.5 2.5 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|20093266|ref|NP_619341.1| - 1.9e-27 96.0 29.1 5.5e-17 62.1 9.2 2.9 2 1 1 3 3 3 2 Right handed beta helix region Pentapeptide_4 PF13599.6 gi|20093266|ref|NP_619341.1| - 0.00092 19.3 0.0 0.0025 18.0 0.0 1.7 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) KcnmB2_inactiv PF09303.10 gi|20093266|ref|NP_619341.1| - 0.0094 15.7 18.3 0.021 14.6 0.2 5.1 5 0 0 5 5 5 3 KCNMB2, ball and chain domain Pectate_lyase_3 PF12708.7 gi|20093266|ref|NP_619341.1| - 0.42 10.4 7.1 3.2 7.5 1.7 3.1 2 1 1 3 3 3 0 Pectate lyase superfamily protein rve PF00665.26 gi|20093268|ref|NP_619343.1| - 2.7e-13 50.2 0.0 4.3e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20093268|ref|NP_619343.1| - 2.6e-05 23.9 0.2 6.2e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|20093268|ref|NP_619343.1| - 9.8e-05 22.1 0.1 0.005 16.6 0.1 2.8 1 1 0 1 1 1 1 Integrase core domain HTH_Tnp_ISL3 PF13542.6 gi|20093268|ref|NP_619343.1| - 0.034 13.6 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|20093268|ref|NP_619343.1| - 0.04 14.1 0.1 0.1 12.7 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|20093268|ref|NP_619343.1| - 0.056 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Lsm_C PF14894.6 gi|20093268|ref|NP_619343.1| - 0.11 12.3 0.3 0.35 10.7 0.1 1.9 2 0 0 2 2 2 0 Lsm C-terminal DnaB_2 PF07261.11 gi|20093268|ref|NP_619343.1| - 0.11 12.2 0.2 0.57 10.0 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment HTH_20 PF12840.7 gi|20093269|ref|NP_619344.1| - 2.7e-08 33.8 0.0 3.6e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20093269|ref|NP_619344.1| - 1.9e-06 27.6 0.5 3.7e-06 26.7 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|20093269|ref|NP_619344.1| - 2.2e-05 23.9 0.2 4.7e-05 22.9 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|20093269|ref|NP_619344.1| - 0.00019 21.3 0.1 0.00026 20.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|20093269|ref|NP_619344.1| - 0.0014 18.5 0.2 0.0021 17.9 0.2 1.3 1 0 0 1 1 1 1 MarR family DUF742 PF05331.11 gi|20093269|ref|NP_619344.1| - 0.003 17.3 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_11 PF08279.12 gi|20093269|ref|NP_619344.1| - 0.0039 17.1 0.2 0.0079 16.1 0.2 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|20093269|ref|NP_619344.1| - 0.0068 16.3 0.0 0.0091 15.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|20093269|ref|NP_619344.1| - 0.067 13.0 0.2 0.12 12.2 0.1 1.6 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|20093270|ref|NP_619345.1| - 0.026 14.3 0.0 0.06 13.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_4 PF13613.6 gi|20093270|ref|NP_619345.1| - 0.031 14.0 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Crp_2 PF13545.6 gi|20093270|ref|NP_619345.1| - 0.046 13.7 0.0 0.097 12.7 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain LacI PF00356.21 gi|20093270|ref|NP_619345.1| - 0.066 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_1 PF00126.27 gi|20093270|ref|NP_619345.1| - 0.078 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|20093270|ref|NP_619345.1| - 0.084 12.8 0.0 0.17 11.8 0.0 1.7 1 1 0 1 1 1 0 HTH domain MarR_2 PF12802.7 gi|20093270|ref|NP_619345.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 MarR family NADH-G_4Fe-4S_3 PF10588.9 gi|20093270|ref|NP_619345.1| - 0.099 12.2 0.1 0.25 10.9 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DUF1673 PF07895.11 gi|20093271|ref|NP_619346.1| - 7.9e-61 205.7 5.5 1.8e-43 148.9 1.7 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1673) Bax1-I PF01027.20 gi|20093271|ref|NP_619346.1| - 0.00033 20.5 0.4 0.00044 20.2 0.4 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 ATP-synt_I PF03899.15 gi|20093271|ref|NP_619346.1| - 0.13 12.6 1.9 0.19 12.1 0.9 1.7 1 1 1 2 2 2 0 ATP synthase I chain DUF1673 PF07895.11 gi|20093272|ref|NP_619347.1| - 6.6e-80 268.1 4.3 7.4e-80 268.0 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) Deltameth_res PF16020.5 gi|20093272|ref|NP_619347.1| - 0.11 12.4 0.6 12 5.8 0.0 3.1 3 0 0 3 3 3 0 Deltamethrin resistance DUF2061 PF09834.9 gi|20093272|ref|NP_619347.1| - 0.89 10.1 6.4 2.7 8.6 2.0 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) EcsB PF05975.12 gi|20093272|ref|NP_619347.1| - 1.5 7.6 15.0 0.23 10.2 8.8 2.2 1 1 1 2 2 2 0 Bacterial ABC transporter protein EcsB DUF4131 PF13567.6 gi|20093272|ref|NP_619347.1| - 5.7 6.6 10.6 0.38 10.4 3.4 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) DUF2418 PF10332.9 gi|20093272|ref|NP_619347.1| - 6.3 7.4 6.5 2.7 8.6 0.3 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF2418) DUF1673 PF07895.11 gi|20093273|ref|NP_619348.1| - 1.9e-53 181.6 0.9 2.9e-53 180.9 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) RseC_MucC PF04246.12 gi|20093273|ref|NP_619348.1| - 6.7 6.7 8.1 1.6 8.6 3.5 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF1673 PF07895.11 gi|20093274|ref|NP_619349.1| - 8.6e-44 150.0 1.0 4.1e-43 147.7 1.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) CPP1-like PF11833.8 gi|20093274|ref|NP_619349.1| - 0.17 11.5 0.4 0.38 10.4 0.0 1.6 1 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF1673 PF07895.11 gi|20093275|ref|NP_619350.1| - 2.5e-61 207.3 1.4 3.5e-61 206.9 1.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) RseC_MucC PF04246.12 gi|20093275|ref|NP_619350.1| - 3.7 7.5 4.6 6.3 6.8 1.7 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF1673 PF07895.11 gi|20093276|ref|NP_619351.1| - 3.1e-36 125.2 5.7 4.4e-36 124.7 5.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) NMN_transporter PF04973.12 gi|20093276|ref|NP_619351.1| - 0.0099 15.9 7.3 0.013 15.5 7.3 1.1 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter CPP1-like PF11833.8 gi|20093276|ref|NP_619351.1| - 0.046 13.4 1.2 0.062 13.0 1.2 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2985 PF11204.8 gi|20093276|ref|NP_619351.1| - 2.7 8.2 7.8 1.5 9.0 5.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2985) DUF1673 PF07895.11 gi|20093277|ref|NP_619352.1| - 1.3e-68 231.1 8.2 2.2e-68 230.4 8.2 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) NMN_transporter PF04973.12 gi|20093277|ref|NP_619352.1| - 0.0036 17.3 6.1 0.0051 16.8 6.1 1.2 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter DUF4229 PF14012.6 gi|20093277|ref|NP_619352.1| - 0.3 11.2 6.5 5.9 7.1 3.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) DUF2393 PF09624.10 gi|20093277|ref|NP_619352.1| - 6.2 6.8 7.9 7.1 6.6 5.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2393) DUF1673 PF07895.11 gi|20093278|ref|NP_619353.1| - 4.3e-64 216.4 3.8 2.3e-63 214.0 3.8 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) TMEM72 PF16054.5 gi|20093278|ref|NP_619353.1| - 0.7 9.6 5.3 1.4 8.6 5.3 1.6 1 1 0 1 1 1 0 Transmembrane protein family 72 RDD PF06271.12 gi|20093278|ref|NP_619353.1| - 2.7 8.2 9.2 1.1 9.5 0.6 2.2 2 0 0 2 2 2 0 RDD family DUF1673 PF07895.11 gi|20093279|ref|NP_619354.1| - 7.9e-66 222.1 4.4 7.5e-65 218.9 4.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) DUF4131 PF13567.6 gi|20093279|ref|NP_619354.1| - 3.2 7.4 6.1 16 5.1 6.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) RseC_MucC PF04246.12 gi|20093279|ref|NP_619354.1| - 3.5 7.6 5.5 2.7 8.0 0.4 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4500 PF14937.6 gi|20093281|ref|NP_619356.1| - 0.15 12.1 0.2 19 5.4 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4500) DUF1673 PF07895.11 gi|20093282|ref|NP_619357.1| - 3.5e-55 187.2 9.3 4e-55 187.0 9.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF1673 PF07895.11 gi|20093283|ref|NP_619358.1| - 8.5e-58 195.8 7.5 9.9e-58 195.6 7.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF1673 PF07895.11 gi|20093284|ref|NP_619359.1| - 7.5e-25 88.0 7.6 8.7e-25 87.8 7.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) SUR7 PF06687.12 gi|20093284|ref|NP_619359.1| - 0.35 10.5 5.7 0.055 13.1 1.9 1.5 2 0 0 2 2 2 0 SUR7/PalI family TauE PF01925.19 gi|20093284|ref|NP_619359.1| - 0.79 9.3 7.8 2 8.0 7.9 1.7 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE DUF2070 PF09843.9 gi|20093284|ref|NP_619359.1| - 4.1 5.6 9.1 0.97 7.6 3.6 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) DUF1374 PF07118.11 gi|20093285|ref|NP_619360.1| - 0.019 15.4 0.5 0.15 12.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1374) PyrI PF01948.18 gi|20093286|ref|NP_619361.1| - 4e-31 107.1 1.7 5.4e-31 106.7 1.7 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|20093286|ref|NP_619361.1| - 1.4e-16 60.1 5.4 1.4e-16 60.1 3.0 2.0 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|20093287|ref|NP_619362.1| - 4.7e-50 169.5 0.0 1.6e-49 167.7 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|20093287|ref|NP_619362.1| - 2.8e-30 105.5 0.0 3.8e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MTBP_N PF14918.6 gi|20093288|ref|NP_619363.1| - 0.15 11.5 2.6 0.2 11.1 2.3 1.4 1 1 0 1 1 1 0 MDM2-binding DUF5101 PF17031.5 gi|20093288|ref|NP_619363.1| - 2.8 8.1 8.1 0.46 10.6 3.4 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF5101) RraA-like PF03737.15 gi|20093289|ref|NP_619364.1| - 3.4e-40 137.7 2.8 3.4e-40 137.7 2.8 2.2 2 1 1 3 3 3 1 Aldolase/RraA OMPdecase PF00215.24 gi|20093289|ref|NP_619364.1| - 6.6e-17 61.8 7.7 6.6e-17 61.8 7.7 2.4 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|20093289|ref|NP_619364.1| - 1.3e-05 24.5 2.2 1.3e-05 24.5 2.2 1.9 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.19 gi|20093289|ref|NP_619364.1| - 0.00015 21.4 3.1 0.055 13.0 0.2 2.6 1 1 1 2 2 2 2 HMGL-like IGPS PF00218.21 gi|20093289|ref|NP_619364.1| - 0.0003 20.1 0.9 0.0005 19.3 0.9 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Peripla_BP_4 PF13407.6 gi|20093289|ref|NP_619364.1| - 0.00039 20.1 1.9 0.00082 19.0 1.9 1.5 1 0 0 1 1 1 1 Periplasmic binding protein domain Trp_syntA PF00290.20 gi|20093289|ref|NP_619364.1| - 0.18 10.6 2.4 3.3 6.5 0.0 2.5 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DUF561 PF04481.12 gi|20093289|ref|NP_619364.1| - 0.25 10.5 2.4 1.6 7.8 0.7 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF561) Arc_PepC_II PF06847.11 gi|20093290|ref|NP_619365.1| - 1.5e-28 99.1 0.0 3.1e-28 98.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|20093290|ref|NP_619365.1| - 3.7e-15 56.2 7.0 3.7e-15 56.2 7.0 2.1 2 0 0 2 2 2 1 Type IV leader peptidase family AA_permease PF00324.21 gi|20093291|ref|NP_619366.1| - 7e-50 170.0 41.9 9.5e-50 169.6 41.9 1.1 1 0 0 1 1 1 1 Amino acid permease RQC PF09382.10 gi|20093292|ref|NP_619367.1| - 3.3e-35 120.3 0.0 9.1e-35 118.9 0.0 1.7 1 0 0 1 1 1 1 RQC domain HRDC PF00570.23 gi|20093292|ref|NP_619367.1| - 2.2e-22 78.8 0.0 8.8e-22 76.9 0.0 2.1 2 0 0 2 2 2 1 HRDC domain Helicase_C PF00271.31 gi|20093292|ref|NP_619367.1| - 3.4e-21 75.7 0.2 4.4e-19 68.9 0.0 3.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|20093292|ref|NP_619367.1| - 5.7e-19 68.6 0.0 4.1e-18 65.7 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 gi|20093292|ref|NP_619367.1| - 1.1e-17 64.4 3.1 3.9e-17 62.7 3.1 2.0 1 0 0 1 1 1 1 RecQ zinc-binding HTH_40 PF14493.6 gi|20093292|ref|NP_619367.1| - 1.8e-10 41.2 1.3 5.4e-10 39.6 0.7 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Helicase_Sgs1 PF11408.8 gi|20093292|ref|NP_619367.1| - 1.1e-06 28.6 0.0 2.7e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.15 gi|20093292|ref|NP_619367.1| - 0.018 15.1 0.0 0.089 12.8 0.0 2.2 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Phlebovirus_NSM PF07246.11 gi|20093292|ref|NP_619367.1| - 0.063 12.6 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M GMP_synt_C PF00958.22 gi|20093296|ref|NP_619371.1| - 3.6e-30 103.9 0.0 7.7e-30 102.8 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|20093296|ref|NP_619371.1| - 1.3e-09 37.5 0.0 1.2e-08 34.4 0.0 2.0 1 1 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|20093296|ref|NP_619371.1| - 0.00025 20.6 0.0 0.00058 19.4 0.0 1.6 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|20093296|ref|NP_619371.1| - 0.0014 17.5 0.0 0.05 12.4 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|20093296|ref|NP_619371.1| - 0.0062 16.6 0.0 0.0087 16.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|20093296|ref|NP_619371.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) FR47 PF08445.10 gi|20093297|ref|NP_619372.1| - 8e-11 41.8 0.0 2e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|20093297|ref|NP_619372.1| - 1.3e-10 41.6 0.0 2.5e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20093297|ref|NP_619372.1| - 1.7e-10 40.9 0.1 7.1e-10 38.9 0.1 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|20093297|ref|NP_619372.1| - 4.5e-07 29.7 0.1 5.1e-06 26.3 0.0 2.4 1 1 1 3 3 3 1 GNAT acetyltransferase Acetyltransf_7 PF13508.7 gi|20093297|ref|NP_619372.1| - 3.4e-06 27.4 0.0 8.1e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20093297|ref|NP_619372.1| - 4e-05 24.3 0.1 6.9e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20093297|ref|NP_619372.1| - 7.8e-05 22.8 0.1 0.0011 19.0 0.1 2.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20093297|ref|NP_619372.1| - 0.011 15.8 0.0 0.034 14.3 0.0 1.8 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|20093297|ref|NP_619372.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1184 PF06683.11 gi|20093297|ref|NP_619372.1| - 0.06 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) Radical_SAM PF04055.21 gi|20093298|ref|NP_619373.1| - 4.6e-06 27.1 0.0 1.2e-05 25.7 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|20093298|ref|NP_619373.1| - 0.14 12.2 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|20093299|ref|NP_619374.1| - 2e-18 66.7 0.0 2.4e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|20093299|ref|NP_619374.1| - 2.8e-15 56.5 0.0 3.9e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20093299|ref|NP_619374.1| - 2.8e-13 50.3 0.0 3.3e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|20093299|ref|NP_619374.1| - 1.8e-12 47.3 0.0 2.5e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|20093299|ref|NP_619374.1| - 5.2e-12 46.6 0.0 6.1e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20093299|ref|NP_619374.1| - 0.00012 21.9 0.1 0.00086 19.2 0.1 2.3 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|20093299|ref|NP_619374.1| - 0.0014 18.3 0.0 0.0022 17.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20093299|ref|NP_619374.1| - 0.0033 17.5 0.0 0.0055 16.8 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|20093299|ref|NP_619374.1| - 0.0049 16.9 0.1 0.014 15.4 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Tox-SGS PF15651.6 gi|20093299|ref|NP_619374.1| - 0.21 11.8 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Salivary glad secreted protein domain toxin AA_kinase PF00696.28 gi|20093300|ref|NP_619375.1| - 1.5e-44 152.4 5.6 1.8e-44 152.2 5.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family XPG_N PF00752.17 gi|20093300|ref|NP_619375.1| - 0.06 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 XPG N-terminal domain MC1 PF05854.11 gi|20093301|ref|NP_619376.1| - 2.3e-40 136.8 1.2 2.7e-40 136.6 1.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.14 gi|20093302|ref|NP_619377.1| - 4.6e-84 282.0 2.3 5.3e-84 281.8 2.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|20093302|ref|NP_619377.1| - 0.00059 20.4 0.3 0.098 13.2 0.0 3.0 3 1 0 3 3 3 2 Dihydroneopterin aldolase DUF2098 PF09871.9 gi|20093303|ref|NP_619378.1| - 1.4e-23 83.0 0.8 1.8e-23 82.7 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) DUF2114 PF09887.9 gi|20093304|ref|NP_619379.1| - 9.8e-232 769.2 4.0 1.1e-231 769.1 4.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) FrhB_FdhB_C PF04432.13 gi|20093305|ref|NP_619380.1| - 7.5e-41 139.5 1.2 1e-40 139.1 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|20093305|ref|NP_619380.1| - 3.9e-26 91.0 0.1 4.8e-25 87.5 0.0 2.5 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term YHS PF04945.13 gi|20093305|ref|NP_619380.1| - 6.9e-12 45.3 0.7 1.6e-11 44.1 0.7 1.6 1 0 0 1 1 1 1 YHS domain Fer4_10 PF13237.6 gi|20093305|ref|NP_619380.1| - 0.00018 21.6 12.4 0.00022 21.3 10.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain zf-FCS PF06467.14 gi|20093305|ref|NP_619380.1| - 0.0054 16.7 2.6 0.0054 16.7 2.6 2.9 3 0 0 3 3 3 1 MYM-type Zinc finger with FCS sequence motif Fer4_4 PF12800.7 gi|20093305|ref|NP_619380.1| - 0.0082 16.6 15.1 0.086 13.4 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|20093305|ref|NP_619380.1| - 0.011 15.9 13.6 0.19 11.9 12.8 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|20093305|ref|NP_619380.1| - 0.013 15.5 10.7 0.08 13.0 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|20093305|ref|NP_619380.1| - 0.038 13.8 17.7 0.083 12.7 3.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Arc_trans_TRASH PF08394.10 gi|20093305|ref|NP_619380.1| - 0.046 14.1 1.9 0.046 14.1 1.9 2.4 2 0 0 2 2 1 0 Archaeal TRASH domain Fer4_16 PF13484.6 gi|20093305|ref|NP_619380.1| - 0.079 13.9 9.6 2.1 9.4 0.7 3.2 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|20093305|ref|NP_619380.1| - 0.09 13.3 15.7 0.48 11.0 3.0 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|20093305|ref|NP_619380.1| - 0.23 12.2 3.5 16 6.3 0.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_7 PF12838.7 gi|20093305|ref|NP_619380.1| - 0.25 12.0 14.4 0.62 10.7 2.2 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain zf-FLZ PF04570.14 gi|20093305|ref|NP_619380.1| - 0.71 9.4 4.4 1.1 8.8 0.3 3.2 3 0 0 3 3 3 0 zinc-finger of the FCS-type, C2-C2 Fer4_8 PF13183.6 gi|20093305|ref|NP_619380.1| - 1.3 9.6 15.3 3 8.3 1.8 2.9 2 1 3 5 5 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|20093305|ref|NP_619380.1| - 1.7 8.9 19.7 0.12 12.5 1.6 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|20093305|ref|NP_619380.1| - 7.6 6.8 13.7 2.6 8.3 10.3 2.1 2 0 0 2 2 1 0 4Fe-4S dicluster domain OsmC PF02566.19 gi|20093306|ref|NP_619381.1| - 8.3e-18 64.7 0.0 1.8e-17 63.6 0.0 1.5 1 0 0 1 1 1 1 OsmC-like protein Phytochelatin PF05023.14 gi|20093306|ref|NP_619381.1| - 0.052 12.8 0.1 0.22 10.7 0.0 1.9 2 0 0 2 2 2 0 Phytochelatin synthase Glu-tRNAGln PF02686.15 gi|20093307|ref|NP_619382.1| - 1.6e-17 63.6 0.8 2.1e-17 63.2 0.8 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Chorion_S16 PF05836.12 gi|20093307|ref|NP_619382.1| - 0.015 15.5 0.0 0.017 15.4 0.0 1.1 1 0 0 1 1 1 0 Chorion protein S16 RecG_N PF17190.4 gi|20093307|ref|NP_619382.1| - 0.077 13.7 0.2 0.16 12.7 0.0 1.5 2 0 0 2 2 2 0 RecG N-terminal helical domain VCX_VCY PF15231.6 gi|20093307|ref|NP_619382.1| - 0.17 12.5 0.1 0.23 12.1 0.1 1.1 1 0 0 1 1 1 0 Variable charge X/Y family Amidase PF01425.21 gi|20093308|ref|NP_619383.1| - 5.7e-160 533.2 0.0 6.5e-160 533.0 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|20093309|ref|NP_619384.1| - 8.9e-103 343.4 0.0 1.2e-102 343.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|20093309|ref|NP_619384.1| - 3.7e-51 172.9 0.2 5.9e-51 172.3 0.2 1.3 1 0 0 1 1 1 1 GatB domain CN_hydrolase PF00795.22 gi|20093310|ref|NP_619385.1| - 1.4e-46 159.0 0.0 1.6e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_31 PF13847.6 gi|20093312|ref|NP_619387.1| - 3.3e-19 69.2 0.0 3.9e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20093312|ref|NP_619387.1| - 1.6e-17 63.9 0.0 2.2e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20093312|ref|NP_619387.1| - 5.3e-15 55.9 0.0 8e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20093312|ref|NP_619387.1| - 1.2e-11 44.7 0.0 1.5e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093312|ref|NP_619387.1| - 7.7e-10 39.4 0.0 1.1e-09 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093312|ref|NP_619387.1| - 2e-09 37.1 0.0 2.6e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Fibrillarin PF01269.17 gi|20093312|ref|NP_619387.1| - 1.1e-06 27.9 0.0 1.4e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin MTS PF05175.14 gi|20093312|ref|NP_619387.1| - 7.7e-06 25.6 0.0 1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|20093312|ref|NP_619387.1| - 1.4e-05 24.7 0.0 2e-05 24.1 0.0 1.2 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|20093312|ref|NP_619387.1| - 3.5e-05 23.5 0.0 4.7e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|20093312|ref|NP_619387.1| - 0.00012 22.0 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|20093312|ref|NP_619387.1| - 0.00075 19.7 0.0 0.0012 18.9 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.20 gi|20093312|ref|NP_619387.1| - 0.00098 18.5 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|20093312|ref|NP_619387.1| - 0.0023 17.4 0.0 0.022 14.3 0.0 1.9 1 1 0 1 1 1 1 Putative methyltransferase GCD14 PF08704.10 gi|20093312|ref|NP_619387.1| - 0.0035 17.1 0.0 0.0092 15.7 0.0 1.8 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit TehB PF03848.14 gi|20093312|ref|NP_619387.1| - 0.0073 15.7 0.0 0.0099 15.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltr_RsmB-F PF01189.17 gi|20093312|ref|NP_619387.1| - 0.033 13.8 0.0 0.49 10.0 0.0 2.0 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F Met_10 PF02475.16 gi|20093312|ref|NP_619387.1| - 0.043 13.5 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DRE2_N PF16803.5 gi|20093312|ref|NP_619387.1| - 0.077 13.3 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus Methyltransf_24 PF13578.6 gi|20093312|ref|NP_619387.1| - 0.087 13.9 0.0 0.12 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|20093312|ref|NP_619387.1| - 0.09 11.3 0.0 0.1 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase IstB_IS21 PF01695.17 gi|20093314|ref|NP_619389.1| - 7.4e-67 224.5 0.0 1.2e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|20093314|ref|NP_619389.1| - 1.2e-05 25.3 0.0 3.5e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|20093314|ref|NP_619389.1| - 1.6e-05 25.4 0.0 3.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|20093314|ref|NP_619389.1| - 0.00028 20.6 0.0 0.00056 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|20093314|ref|NP_619389.1| - 0.00046 20.5 0.1 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20093314|ref|NP_619389.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RsgA_GTPase PF03193.16 gi|20093314|ref|NP_619389.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|20093314|ref|NP_619389.1| - 0.0061 16.8 0.2 5.6 7.2 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|20093314|ref|NP_619389.1| - 0.0066 16.8 0.0 0.02 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|20093314|ref|NP_619389.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|20093314|ref|NP_619389.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|20093314|ref|NP_619389.1| - 0.015 15.8 2.0 0.14 12.7 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|20093314|ref|NP_619389.1| - 0.015 14.9 0.1 0.046 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|20093314|ref|NP_619389.1| - 0.032 14.7 0.9 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|20093314|ref|NP_619389.1| - 0.079 12.7 0.3 0.63 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain YqgF PF14639.6 gi|20093314|ref|NP_619389.1| - 0.083 12.7 0.3 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 ABC_tran PF00005.27 gi|20093314|ref|NP_619389.1| - 0.18 12.3 0.4 0.61 10.6 0.0 2.1 3 1 0 3 3 2 0 ABC transporter AAA_11 PF13086.6 gi|20093314|ref|NP_619389.1| - 0.18 11.6 0.9 9.5 5.9 0.0 2.9 1 1 1 3 3 3 0 AAA domain Mlp PF03304.13 gi|20093314|ref|NP_619389.1| - 0.28 11.4 4.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Mlp lipoprotein family rve PF00665.26 gi|20093315|ref|NP_619390.1| - 3.4e-24 85.3 0.0 6e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.15 gi|20093315|ref|NP_619390.1| - 1.4e-05 25.0 0.2 3.4e-05 23.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase rve_3 PF13683.6 gi|20093315|ref|NP_619390.1| - 9.5e-05 22.1 0.0 0.00021 21.0 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|20093315|ref|NP_619390.1| - 9.9e-05 22.0 0.0 0.00039 20.1 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|20093315|ref|NP_619390.1| - 0.00016 21.3 0.2 0.00033 20.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|20093315|ref|NP_619390.1| - 0.0029 17.6 0.0 0.0091 16.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix Terminase_5 PF06056.12 gi|20093315|ref|NP_619390.1| - 0.0065 16.3 0.0 0.058 13.3 0.0 2.3 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4 PF04545.16 gi|20093315|ref|NP_619390.1| - 0.01 15.3 0.2 0.055 13.0 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_Tc3_1 PF11427.8 gi|20093315|ref|NP_619390.1| - 0.012 15.5 0.0 0.042 13.7 0.0 1.9 1 0 0 1 1 1 0 Tc3 transposase HTH_3 PF01381.22 gi|20093315|ref|NP_619390.1| - 0.018 15.1 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|20093315|ref|NP_619390.1| - 0.063 13.0 0.1 0.18 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|20093315|ref|NP_619390.1| - 0.092 12.6 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 Phage NinH protein NUMOD1 PF07453.13 gi|20093315|ref|NP_619390.1| - 0.13 12.5 0.0 5.5 7.4 0.0 2.6 2 0 0 2 2 2 0 NUMOD1 domain HTH_28 PF13518.6 gi|20093315|ref|NP_619390.1| - 0.15 12.2 0.0 0.44 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|20093315|ref|NP_619390.1| - 0.2 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding S-layer PF07752.11 gi|20093316|ref|NP_619391.1| - 4.9e-45 153.6 4.9 6.3e-45 153.2 4.9 1.1 1 0 0 1 1 1 1 S-layer protein ABC_tran PF00005.27 gi|20093317|ref|NP_619392.1| - 1.8e-34 119.2 0.0 2.4e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20093317|ref|NP_619392.1| - 3.7e-13 50.0 0.3 8.6e-06 25.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|20093317|ref|NP_619392.1| - 2e-06 28.5 0.1 2.6e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|20093317|ref|NP_619392.1| - 2.3e-06 27.2 0.2 0.025 14.0 0.1 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20093317|ref|NP_619392.1| - 3.2e-06 26.8 0.0 6.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20093317|ref|NP_619392.1| - 2.9e-05 24.0 0.1 5.2e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|20093317|ref|NP_619392.1| - 0.0012 17.7 0.1 0.59 8.9 0.1 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|20093317|ref|NP_619392.1| - 0.0014 18.4 0.1 0.016 14.9 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|20093317|ref|NP_619392.1| - 0.0044 16.8 0.0 0.0096 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20093317|ref|NP_619392.1| - 0.0071 16.8 0.1 0.012 16.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|20093317|ref|NP_619392.1| - 0.0072 15.9 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|20093317|ref|NP_619392.1| - 0.018 15.0 0.1 0.14 12.1 0.1 2.1 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.21 gi|20093317|ref|NP_619392.1| - 0.023 14.1 0.1 0.043 13.2 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|20093317|ref|NP_619392.1| - 0.023 15.1 0.1 0.072 13.5 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|20093317|ref|NP_619392.1| - 0.038 13.6 0.1 0.074 12.7 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MukB PF04310.12 gi|20093317|ref|NP_619392.1| - 0.056 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_22 PF13401.6 gi|20093317|ref|NP_619392.1| - 0.085 13.1 0.4 0.28 11.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|20093317|ref|NP_619392.1| - 0.09 13.1 0.2 0.23 11.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF2244 PF10003.9 gi|20093317|ref|NP_619392.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Rad17 PF03215.15 gi|20093317|ref|NP_619392.1| - 0.11 12.4 0.2 0.18 11.7 0.2 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|20093317|ref|NP_619392.1| - 0.12 12.1 0.2 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|20093318|ref|NP_619393.1| - 9.5e-90 300.8 32.8 1.1e-89 300.5 32.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20093318|ref|NP_619393.1| - 1.5e-05 24.7 18.0 1.5e-05 24.7 18.0 1.7 1 1 0 1 1 1 1 ABC 3 transport family RseC_MucC PF04246.12 gi|20093318|ref|NP_619393.1| - 0.023 14.7 0.1 0.023 14.7 0.1 3.8 5 1 0 5 5 5 0 Positive regulator of sigma(E), RseC/MucC Radical_SAM PF04055.21 gi|20093319|ref|NP_619394.1| - 2.4e-06 28.0 0.0 8.5e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|20093319|ref|NP_619394.1| - 5.6e-05 23.4 0.2 0.00012 22.4 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peripla_BP_2 PF01497.18 gi|20093319|ref|NP_619394.1| - 0.00028 20.5 0.0 0.00049 19.7 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein zf-C4_Topoisom PF01396.19 gi|20093319|ref|NP_619394.1| - 0.0081 15.9 0.2 1.7 8.5 0.0 2.6 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 gi|20093319|ref|NP_619394.1| - 0.092 12.9 0.1 0.5 10.6 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Methyltransf_11 PF08241.12 gi|20093320|ref|NP_619395.1| - 1.2e-19 70.8 0.0 2.8e-19 69.6 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20093320|ref|NP_619395.1| - 5.8e-17 62.2 0.0 1.5e-16 60.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093320|ref|NP_619395.1| - 3.8e-13 49.5 0.0 4.6e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093320|ref|NP_619395.1| - 2e-09 38.1 0.0 3e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093320|ref|NP_619395.1| - 6.3e-09 35.5 0.0 8.2e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|20093320|ref|NP_619395.1| - 6.2e-06 26.1 0.0 8.5e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|20093320|ref|NP_619395.1| - 0.0004 20.3 0.0 0.0066 16.3 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.13 gi|20093320|ref|NP_619395.1| - 0.00046 19.7 0.0 0.00065 19.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|20093320|ref|NP_619395.1| - 0.00065 19.3 0.0 0.0011 18.5 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain N6_N4_Mtase PF01555.18 gi|20093320|ref|NP_619395.1| - 0.0039 16.9 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 2 DNA methylase CMAS PF02353.20 gi|20093320|ref|NP_619395.1| - 0.0096 15.2 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|20093320|ref|NP_619395.1| - 0.012 15.7 0.0 0.015 15.3 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|20093320|ref|NP_619395.1| - 0.016 14.9 0.0 0.083 12.6 0.0 1.8 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_29 PF03141.16 gi|20093320|ref|NP_619395.1| - 0.03 12.9 0.0 0.038 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DOT1 PF08123.13 gi|20093320|ref|NP_619395.1| - 0.16 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Peripla_BP_2 PF01497.18 gi|20093321|ref|NP_619396.1| - 3.9e-22 79.0 0.0 5.7e-22 78.4 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein Cytochrom_B_C PF00032.17 gi|20093322|ref|NP_619397.1| - 0.7 10.2 4.9 0.87 9.9 0.1 2.6 3 0 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD RibD_C PF01872.17 gi|20093324|ref|NP_619399.1| - 1.3e-20 74.1 0.0 2.5e-15 56.8 0.0 2.0 1 1 1 2 2 2 2 RibD C-terminal domain DHFR_1 PF00186.19 gi|20093324|ref|NP_619399.1| - 2.6e-06 27.2 0.0 4.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Dihydrofolate reductase Mrr_cat PF04471.12 gi|20093325|ref|NP_619400.1| - 9.2e-36 122.4 0.0 1.4e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.6 gi|20093325|ref|NP_619400.1| - 6.8e-35 119.1 0.2 1.3e-34 118.2 0.2 1.5 1 0 0 1 1 1 1 Mrr N-terminal domain Mrr_cat_2 PF13156.6 gi|20093325|ref|NP_619400.1| - 4.4e-11 42.8 0.0 1.3e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Restriction endonuclease Peptidase_M48 PF01435.18 gi|20093326|ref|NP_619401.1| - 3.4e-37 128.1 0.0 4.9e-37 127.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|20093326|ref|NP_619401.1| - 5.4e-05 22.5 0.0 9.7e-05 21.7 0.0 1.5 2 0 0 2 2 2 1 BlaR1 peptidase M56 BSP PF04450.12 gi|20093326|ref|NP_619401.1| - 0.026 14.3 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria SprT-like PF10263.9 gi|20093326|ref|NP_619401.1| - 0.16 11.8 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 SprT-like family WLM PF08325.10 gi|20093326|ref|NP_619401.1| - 0.21 11.6 0.1 0.33 11.0 0.1 1.2 1 0 0 1 1 1 0 WLM domain DUF4157 PF13699.6 gi|20093326|ref|NP_619401.1| - 0.22 11.8 1.3 0.56 10.5 1.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4157) Thymidylat_synt PF00303.19 gi|20093327|ref|NP_619402.1| - 3.8e-21 75.4 0.0 4.6e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase BNR_6 PF15899.5 gi|20093327|ref|NP_619402.1| - 0.052 13.6 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 BNR-Asp box repeat EPSP_synthase PF00275.20 gi|20093328|ref|NP_619403.1| - 7.4e-117 390.6 0.8 8.8e-117 390.3 0.8 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PrmA PF06325.13 gi|20093329|ref|NP_619404.1| - 2.6e-06 27.0 0.0 5.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|20093329|ref|NP_619404.1| - 4.9e-05 24.0 0.0 0.00035 21.2 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20093329|ref|NP_619404.1| - 0.00013 21.6 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|20093329|ref|NP_619404.1| - 0.0075 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MCR_alpha_N PF02745.15 gi|20093330|ref|NP_619405.1| - 3e-146 485.9 2.0 3.9e-146 485.5 2.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|20093330|ref|NP_619405.1| - 2e-66 222.2 4.7 2e-66 222.2 4.7 2.0 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Sterol_MT_C PF08498.10 gi|20093330|ref|NP_619405.1| - 0.063 13.6 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal MCR_gamma PF02240.16 gi|20093331|ref|NP_619406.1| - 4.7e-116 386.3 0.2 5.3e-116 386.1 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|20093332|ref|NP_619407.1| - 2.2e-06 27.0 0.1 3e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C TetR_C_17 PF17922.1 gi|20093332|ref|NP_619407.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MCR_D PF02505.14 gi|20093333|ref|NP_619408.1| - 2.3e-57 192.9 0.1 2.6e-57 192.7 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|20093334|ref|NP_619409.1| - 2.1e-136 453.4 6.8 3.5e-136 452.6 6.8 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|20093334|ref|NP_619409.1| - 8.6e-80 266.7 2.5 8.6e-80 266.7 2.5 1.6 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Radical_SAM PF04055.21 gi|20093335|ref|NP_619410.1| - 5.8e-11 43.1 5.3 3.9e-09 37.1 4.8 3.0 2 1 0 2 2 2 1 Radical SAM superfamily PaRep2b PF07775.11 gi|20093335|ref|NP_619410.1| - 0.13 10.7 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 PaRep2b protein PolC_DP2 PF03833.13 gi|20093336|ref|NP_619411.1| - 0 1300.9 0.0 0 1300.1 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.12 gi|20093336|ref|NP_619411.1| - 0.0026 17.7 10.3 0.83 9.7 7.8 2.5 2 0 0 2 2 2 2 zinc-ribbons HypA PF01155.19 gi|20093336|ref|NP_619411.1| - 0.11 12.5 11.9 0.43 10.6 0.1 3.3 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TerY_C PF15616.6 gi|20093336|ref|NP_619411.1| - 1.1 9.4 15.3 0.27 11.3 9.4 2.6 2 1 0 2 2 2 0 TerY-C metal binding domain DUF2072 PF09845.9 gi|20093336|ref|NP_619411.1| - 1.5 9.1 5.7 0.58 10.4 0.1 2.9 3 0 0 3 3 3 0 Zn-ribbon containing protein DZR PF12773.7 gi|20093336|ref|NP_619411.1| - 3.1 7.9 20.4 0.67 10.0 0.5 3.1 3 1 0 3 3 3 0 Double zinc ribbon DUF2231 PF09990.9 gi|20093337|ref|NP_619412.1| - 0.017 15.6 0.7 0.22 12.0 0.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2231) DUF4191 PF13829.6 gi|20093337|ref|NP_619412.1| - 0.035 13.4 0.3 0.041 13.2 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4212 PF13937.6 gi|20093337|ref|NP_619412.1| - 0.068 13.6 0.2 0.1 13.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) DUF2207 PF09972.9 gi|20093337|ref|NP_619412.1| - 0.073 11.8 0.4 0.077 11.8 0.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF872 PF05915.12 gi|20093337|ref|NP_619412.1| - 0.1 12.8 3.3 0.31 11.2 2.1 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Tetraspanin PF00335.20 gi|20093337|ref|NP_619412.1| - 6 6.5 6.2 20 4.8 6.8 1.6 1 1 1 2 2 2 0 Tetraspanin family Sua5_yciO_yrdC PF01300.18 gi|20093338|ref|NP_619413.1| - 2.2e-55 187.0 0.0 3.4e-55 186.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|20093338|ref|NP_619413.1| - 1.6e-26 93.5 0.0 2.4e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding DUF613 PF04764.12 gi|20093338|ref|NP_619413.1| - 0.063 13.4 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF613) RuBisCO_large PF00016.20 gi|20093339|ref|NP_619414.1| - 3.3e-102 341.7 0.1 4e-102 341.4 0.1 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|20093339|ref|NP_619414.1| - 1.3e-42 144.7 0.0 2.8e-42 143.7 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain cobW PF02492.19 gi|20093340|ref|NP_619415.1| - 1.2e-38 132.4 0.2 2e-38 131.7 0.2 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|20093340|ref|NP_619415.1| - 0.019 15.0 0.1 0.041 13.9 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|20093340|ref|NP_619415.1| - 0.031 14.5 0.1 0.086 13.1 0.1 1.8 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|20093340|ref|NP_619415.1| - 0.038 13.6 0.2 0.082 12.5 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 gi|20093340|ref|NP_619415.1| - 0.054 13.2 0.2 0.1 12.3 0.2 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 gi|20093340|ref|NP_619415.1| - 0.056 13.3 0.5 0.72 9.7 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase GTP_EFTU PF00009.27 gi|20093340|ref|NP_619415.1| - 0.1 12.1 0.8 9.1 5.8 0.1 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.12 gi|20093340|ref|NP_619415.1| - 0.11 11.7 0.0 0.22 10.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|20093340|ref|NP_619415.1| - 0.19 12.3 1.1 0.39 11.3 1.1 1.5 1 0 0 1 1 1 0 AAA domain URO-D PF01208.17 gi|20093342|ref|NP_619417.1| - 1.4e-67 228.3 0.0 1.8e-66 224.7 0.0 2.1 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|20093342|ref|NP_619417.1| - 1.2e-22 80.1 0.1 7.3e-22 77.7 0.1 2.3 3 0 0 3 3 3 1 B12 binding domain B12-binding_2 PF02607.17 gi|20093342|ref|NP_619417.1| - 6.2e-16 58.6 1.4 4.3e-15 55.9 0.1 2.9 3 0 0 3 3 3 1 B12 binding domain Hydrolase PF00702.26 gi|20093342|ref|NP_619417.1| - 0.032 14.5 0.0 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase URO-D PF01208.17 gi|20093343|ref|NP_619418.1| - 7.3e-81 272.0 0.0 8.2e-81 271.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF1724 PF08350.10 gi|20093344|ref|NP_619419.1| - 3.5e-20 71.9 0.6 7.4e-20 70.8 0.3 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|20093344|ref|NP_619419.1| - 0.00038 20.3 0.2 0.00079 19.2 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20093344|ref|NP_619419.1| - 0.0019 18.2 0.1 0.0034 17.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GAF_2 PF13185.6 gi|20093345|ref|NP_619420.1| - 1.2e-41 142.2 0.0 2.3e-26 92.8 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|20093345|ref|NP_619420.1| - 3.9e-37 126.4 0.7 4.6e-18 65.3 0.1 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|20093345|ref|NP_619420.1| - 2.1e-20 73.3 0.0 9.2e-20 71.2 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|20093345|ref|NP_619420.1| - 1.4e-14 54.2 0.4 9.4e-06 25.8 0.0 4.1 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|20093345|ref|NP_619420.1| - 1.2e-12 48.1 0.0 5.6e-06 26.6 0.0 3.7 4 0 0 4 4 4 2 PAS fold GAF PF01590.26 gi|20093345|ref|NP_619420.1| - 2.7e-10 41.0 0.0 3.8e-06 27.6 0.0 2.3 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|20093345|ref|NP_619420.1| - 3.1e-09 36.8 0.2 9.2e-06 25.6 0.0 3.4 4 0 0 4 4 4 2 PAS fold GAF_3 PF13492.6 gi|20093345|ref|NP_619420.1| - 9.6e-05 22.7 0.0 0.31 11.4 0.0 2.6 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.7 gi|20093345|ref|NP_619420.1| - 0.00067 19.6 0.0 0.0025 17.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain Flagellar_rod PF05149.12 gi|20093345|ref|NP_619420.1| - 0.023 14.2 1.5 0.044 13.2 1.5 1.4 1 0 0 1 1 1 0 Paraflagellar rod protein PAS_11 PF14598.6 gi|20093345|ref|NP_619420.1| - 0.065 13.4 0.0 21 5.3 0.0 2.6 2 0 0 2 2 2 0 PAS domain Hydantoinase_A PF01968.18 gi|20093346|ref|NP_619421.1| - 3.5e-33 115.1 2.3 2.1e-32 112.6 0.1 2.5 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20093346|ref|NP_619421.1| - 2.6e-27 95.7 6.0 1.1e-23 83.8 0.8 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20093346|ref|NP_619421.1| - 3e-07 29.4 1.5 0.0082 14.8 0.1 2.2 2 0 0 2 2 2 2 MutL protein DprA_WH PF17782.1 gi|20093346|ref|NP_619421.1| - 0.021 14.9 0.0 0.059 13.5 0.0 1.7 1 0 0 1 1 1 0 DprA winged helix domain BcrAD_BadFG PF01869.20 gi|20093346|ref|NP_619421.1| - 0.021 14.3 2.0 0.11 12.0 2.0 2.1 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|20093346|ref|NP_619421.1| - 0.14 11.4 0.2 0.52 9.5 0.0 1.9 2 0 0 2 2 2 0 StbA protein FtsA PF14450.6 gi|20093346|ref|NP_619421.1| - 1.5 9.3 5.2 2.1 8.8 0.4 2.8 2 1 1 3 3 3 0 Cell division protein FtsA Hydantoinase_A PF01968.18 gi|20093347|ref|NP_619422.1| - 2.8e-33 115.4 2.9 3.2e-33 115.3 0.5 2.2 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|20093347|ref|NP_619422.1| - 3.1e-27 95.4 2.1 3.4e-22 79.0 0.2 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|20093347|ref|NP_619422.1| - 6.8e-07 28.2 1.9 0.0086 14.7 0.2 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|20093347|ref|NP_619422.1| - 0.00069 19.2 0.1 0.2 11.1 0.1 2.5 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|20093347|ref|NP_619422.1| - 0.0061 16.1 0.3 0.058 12.9 0.0 2.2 2 0 0 2 2 2 1 ROK family Metallophos PF00149.28 gi|20093348|ref|NP_619423.1| - 4e-19 69.9 0.5 5.3e-19 69.5 0.5 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|20093348|ref|NP_619423.1| - 3.5e-15 56.6 0.0 5.1e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|20093348|ref|NP_619423.1| - 0.00023 20.6 0.0 0.00084 18.7 0.0 1.8 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily MutL PF13941.6 gi|20093348|ref|NP_619423.1| - 0.011 14.4 0.0 0.015 13.9 0.0 1.1 1 0 0 1 1 1 0 MutL protein DUF2124 PF09897.9 gi|20093348|ref|NP_619423.1| - 0.049 13.5 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) PhaG_MnhG_YufB PF03334.14 gi|20093350|ref|NP_619425.1| - 5.6e-25 87.4 7.3 7e-25 87.1 7.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF5079 PF16882.5 gi|20093350|ref|NP_619425.1| - 0.038 13.9 1.1 0.041 13.7 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5079) MrpF_PhaF PF04066.13 gi|20093351|ref|NP_619426.1| - 2.7e-13 50.1 5.6 2.7e-13 50.1 5.6 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 gi|20093352|ref|NP_619427.1| - 1.7e-42 144.6 0.3 1.9e-42 144.4 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|20093353|ref|NP_619428.1| - 1.8e-60 204.6 29.3 1.8e-60 204.6 29.3 2.0 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|20093353|ref|NP_619428.1| - 0.0017 18.4 1.9 0.0017 18.4 1.9 3.3 3 1 1 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_N PF00662.20 gi|20093353|ref|NP_619428.1| - 0.0033 17.5 0.3 0.0033 17.5 0.3 3.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CybS PF05328.12 gi|20093353|ref|NP_619428.1| - 0.86 9.3 8.7 0.11 12.2 1.1 3.1 2 1 1 3 3 3 0 CybS, succinate dehydrogenase cytochrome B small subunit Oxidored_q2 PF00420.24 gi|20093354|ref|NP_619429.1| - 1.7e-45 152.9 2.6 2.3e-45 152.5 2.6 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF5527 PF17665.1 gi|20093354|ref|NP_619429.1| - 0.01 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5527) PMP1_2 PF08114.11 gi|20093354|ref|NP_619429.1| - 0.044 13.5 0.6 0.096 12.4 0.6 1.5 1 0 0 1 1 1 0 ATPase proteolipid family PRRSV_2b PF07069.11 gi|20093354|ref|NP_619429.1| - 0.21 12.1 0.1 0.21 12.1 0.1 2.0 2 1 0 2 2 2 0 Porcine reproductive and respiratory syndrome virus 2b MnhB PF04039.13 gi|20093355|ref|NP_619430.1| - 5.5e-28 97.8 7.6 6.3e-28 97.6 7.6 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Proton_antipo_M PF00361.20 gi|20093356|ref|NP_619431.1| - 1.6e-69 234.4 16.9 1.6e-69 234.4 16.9 2.5 3 0 0 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|20093356|ref|NP_619431.1| - 4.6e-18 65.1 6.3 4.6e-18 65.1 6.3 4.7 6 0 0 6 6 6 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|20093356|ref|NP_619431.1| - 9.8e-10 38.4 0.4 9.8e-10 38.4 0.4 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2108 PF09881.9 gi|20093356|ref|NP_619431.1| - 7.7 6.6 16.9 0.11 12.5 6.1 3.7 3 0 0 3 3 3 0 Predicted membrane protein (DUF2108) ArsA_HSP20 PF17886.1 gi|20093357|ref|NP_619432.1| - 1.7e-07 30.7 0.0 2.4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|20093357|ref|NP_619432.1| - 2.3e-06 27.7 0.3 8.4e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Hsp20/alpha crystallin family HSP20 PF00011.21 gi|20093358|ref|NP_619433.1| - 3e-09 37.0 0.6 5.6e-07 29.7 0.6 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|20093358|ref|NP_619433.1| - 1.8e-08 33.8 0.0 2.7e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA AAA PF00004.29 gi|20093359|ref|NP_619434.1| - 6.5e-100 330.8 0.1 2.4e-49 167.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|20093359|ref|NP_619434.1| - 3.6e-32 109.9 2.1 6.3e-16 57.9 0.2 3.2 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|20093359|ref|NP_619434.1| - 2.4e-29 101.3 0.7 7.5e-28 96.5 1.2 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|20093359|ref|NP_619434.1| - 1.8e-16 60.7 0.0 1.1e-06 28.8 0.0 3.1 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|20093359|ref|NP_619434.1| - 6.9e-16 58.4 0.0 8e-08 32.2 0.0 3.0 2 2 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|20093359|ref|NP_619434.1| - 2.4e-15 57.3 0.1 2.9e-06 27.8 0.0 3.8 2 2 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|20093359|ref|NP_619434.1| - 5.9e-15 54.8 0.6 1.8e-14 53.3 0.4 1.9 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|20093359|ref|NP_619434.1| - 2.5e-13 50.2 1.2 7.1e-05 22.8 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|20093359|ref|NP_619434.1| - 1.1e-11 44.6 0.0 4.8e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|20093359|ref|NP_619434.1| - 2.6e-11 43.9 0.0 5.8e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|20093359|ref|NP_619434.1| - 1.4e-10 41.5 2.4 0.0014 19.0 0.0 4.4 3 2 1 4 4 3 2 AAA domain AAA_14 PF13173.6 gi|20093359|ref|NP_619434.1| - 1.6e-10 41.1 0.0 0.00033 20.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|20093359|ref|NP_619434.1| - 4.3e-08 33.1 0.1 0.015 15.0 0.0 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.6 gi|20093359|ref|NP_619434.1| - 6.7e-08 33.1 0.8 0.0077 16.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|20093359|ref|NP_619434.1| - 1.8e-07 30.8 0.1 0.016 14.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|20093359|ref|NP_619434.1| - 2.2e-07 30.8 0.0 0.014 15.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|20093359|ref|NP_619434.1| - 6.2e-07 29.8 0.0 0.029 14.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|20093359|ref|NP_619434.1| - 7.1e-07 29.1 0.0 0.029 14.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|20093359|ref|NP_619434.1| - 7.4e-07 28.8 0.0 0.019 14.5 0.0 2.8 3 0 0 3 3 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|20093359|ref|NP_619434.1| - 1.2e-06 29.1 0.1 0.067 13.7 0.0 2.9 3 0 0 3 3 2 2 ABC transporter RNA_helicase PF00910.22 gi|20093359|ref|NP_619434.1| - 4.3e-06 27.1 0.0 0.11 12.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Zeta_toxin PF06414.12 gi|20093359|ref|NP_619434.1| - 6.6e-06 25.5 0.1 0.039 13.2 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin DUF815 PF05673.13 gi|20093359|ref|NP_619434.1| - 8.5e-06 25.1 0.0 0.075 12.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Vps4_C PF09336.10 gi|20093359|ref|NP_619434.1| - 8.6e-06 25.7 1.8 0.026 14.5 0.0 3.3 3 0 0 3 3 3 2 Vps4 C terminal oligomerisation domain NACHT PF05729.12 gi|20093359|ref|NP_619434.1| - 1e-05 25.6 0.1 0.43 10.5 0.0 3.7 3 1 1 4 4 4 2 NACHT domain TsaE PF02367.17 gi|20093359|ref|NP_619434.1| - 1.2e-05 25.3 0.0 0.14 12.2 0.0 2.8 2 1 1 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|20093359|ref|NP_619434.1| - 1.2e-05 25.1 0.0 0.12 12.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|20093359|ref|NP_619434.1| - 3.8e-05 24.1 0.0 0.073 13.5 0.0 2.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|20093359|ref|NP_619434.1| - 6e-05 22.6 0.1 0.21 11.0 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.6 gi|20093359|ref|NP_619434.1| - 7.4e-05 23.1 0.6 0.37 11.1 0.0 2.9 2 1 0 3 3 2 2 AAA domain AAA_25 PF13481.6 gi|20093359|ref|NP_619434.1| - 7.7e-05 22.3 1.7 1.9 8.0 0.0 4.0 4 0 0 4 4 4 2 AAA domain NB-ARC PF00931.22 gi|20093359|ref|NP_619434.1| - 9.3e-05 21.7 0.0 0.52 9.4 0.0 2.8 2 1 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|20093359|ref|NP_619434.1| - 0.00011 22.0 0.1 0.34 10.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|20093359|ref|NP_619434.1| - 0.00025 20.9 1.1 0.3 10.9 0.0 2.9 3 0 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.6 gi|20093359|ref|NP_619434.1| - 0.0004 20.5 0.0 1 9.5 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|20093359|ref|NP_619434.1| - 0.00066 18.9 0.0 0.9 8.6 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|20093359|ref|NP_619434.1| - 0.00079 18.8 6.1 1.5 8.1 0.0 4.4 3 2 1 5 5 5 2 KaiC ATPase_2 PF01637.18 gi|20093359|ref|NP_619434.1| - 0.00081 19.4 0.1 3.1 7.6 0.0 3.5 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|20093359|ref|NP_619434.1| - 0.0012 18.2 0.0 0.63 9.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TniB PF05621.11 gi|20093359|ref|NP_619434.1| - 0.0018 17.8 0.0 0.95 8.8 0.0 3.2 4 0 0 4 4 3 1 Bacterial TniB protein AFG1_ATPase PF03969.16 gi|20093359|ref|NP_619434.1| - 0.003 16.5 0.0 1 8.2 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase Guanylate_kin PF00625.21 gi|20093359|ref|NP_619434.1| - 0.0045 16.7 0.4 5.2 6.7 0.0 4.0 3 2 2 5 5 4 0 Guanylate kinase Cytidylate_kin PF02224.18 gi|20093359|ref|NP_619434.1| - 0.005 16.6 0.2 1.6 8.4 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase Viral_helicase1 PF01443.18 gi|20093359|ref|NP_619434.1| - 0.0054 16.5 0.0 4.3 7.0 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|20093359|ref|NP_619434.1| - 0.0096 15.9 0.0 2.7 8.0 0.0 3.0 2 2 1 3 3 2 1 Type III restriction enzyme, res subunit CPT PF07931.12 gi|20093359|ref|NP_619434.1| - 0.0096 15.8 0.0 1.4 8.7 0.0 2.9 3 0 0 3 3 3 1 Chloramphenicol phosphotransferase-like protein Bac_DnaA PF00308.18 gi|20093359|ref|NP_619434.1| - 0.022 14.6 0.0 8.1 6.2 0.0 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein DUF1677 PF07911.13 gi|20093359|ref|NP_619434.1| - 0.034 14.5 0.0 1.7 9.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1677) Hydin_ADK PF17213.3 gi|20093359|ref|NP_619434.1| - 0.036 14.4 2.3 0.83 9.9 0.0 2.9 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain NTPase_1 PF03266.15 gi|20093359|ref|NP_619434.1| - 0.04 13.8 5.2 6.3 6.7 0.0 4.0 3 2 1 4 4 3 0 NTPase AAA_29 PF13555.6 gi|20093359|ref|NP_619434.1| - 0.044 13.5 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain IPT PF01745.16 gi|20093359|ref|NP_619434.1| - 0.072 12.5 0.1 15 4.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin2 PF13189.6 gi|20093359|ref|NP_619434.1| - 0.083 13.0 4.6 3.2 7.9 0.0 3.3 4 0 0 4 4 3 0 Cytidylate kinase-like family Rad17 PF03215.15 gi|20093359|ref|NP_619434.1| - 0.086 12.8 0.0 22 4.9 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain MCM PF00493.23 gi|20093359|ref|NP_619434.1| - 0.098 11.7 0.2 13 4.8 0.0 3.0 3 1 0 3 3 2 0 MCM P-loop domain SKI PF01202.22 gi|20093359|ref|NP_619434.1| - 0.13 12.4 2.2 6.4 6.9 0.0 3.0 3 0 0 3 3 2 0 Shikimate kinase AAA_23 PF13476.6 gi|20093359|ref|NP_619434.1| - 0.15 12.5 1.5 39 4.7 0.0 3.5 3 0 0 3 3 3 0 AAA domain Torsin PF06309.11 gi|20093359|ref|NP_619434.1| - 0.19 11.9 0.0 6 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin HTH_5 PF01022.20 gi|20093360|ref|NP_619435.1| - 3.7e-16 58.7 0.2 1.3e-11 44.1 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|20093360|ref|NP_619435.1| - 3.1e-11 43.2 0.1 9e-08 32.1 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|20093360|ref|NP_619435.1| - 3.6e-08 33.2 0.0 0.0047 16.8 0.0 2.3 2 0 0 2 2 2 2 MarR family DprA_WH PF17782.1 gi|20093360|ref|NP_619435.1| - 0.00023 21.2 0.0 0.00046 20.2 0.0 1.5 1 0 0 1 1 1 1 DprA winged helix domain HTH_34 PF13601.6 gi|20093360|ref|NP_619435.1| - 0.00032 20.8 0.0 0.05 13.8 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|20093360|ref|NP_619435.1| - 0.00047 20.0 0.0 0.11 12.4 0.0 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|20093360|ref|NP_619435.1| - 0.00064 19.4 0.6 0.21 11.4 0.0 3.1 3 0 0 3 3 3 1 LexA DNA binding domain HTH_27 PF13463.6 gi|20093360|ref|NP_619435.1| - 0.00068 20.1 0.0 0.58 10.7 0.0 2.8 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.22 gi|20093360|ref|NP_619435.1| - 0.0015 18.4 0.0 0.13 12.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|20093360|ref|NP_619435.1| - 0.0047 16.4 1.2 0.019 14.5 0.5 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2513 PF10711.9 gi|20093360|ref|NP_619435.1| - 0.011 16.0 0.0 0.059 13.7 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) PadR PF03551.14 gi|20093360|ref|NP_619435.1| - 0.017 15.1 0.0 2.4 8.2 0.0 2.9 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DUF742 PF05331.11 gi|20093360|ref|NP_619435.1| - 0.02 14.7 0.0 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF742) HTH_11 PF08279.12 gi|20093360|ref|NP_619435.1| - 0.022 14.7 0.0 0.067 13.1 0.0 1.9 1 0 0 1 1 1 0 HTH domain OmpH PF03938.14 gi|20093360|ref|NP_619435.1| - 0.045 14.1 2.6 0.064 13.6 2.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HTH_36 PF13730.6 gi|20093360|ref|NP_619435.1| - 0.053 13.5 0.0 0.14 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|20093360|ref|NP_619435.1| - 0.097 12.7 0.3 0.66 10.0 0.0 2.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|20093360|ref|NP_619435.1| - 0.099 13.0 0.0 0.64 10.4 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator DUF4527 PF15030.6 gi|20093360|ref|NP_619435.1| - 0.23 10.9 5.0 0.32 10.4 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) Beta_helix PF13229.6 gi|20093361|ref|NP_619436.1| - 2.8e-44 150.8 84.5 6.9e-20 71.5 35.8 3.3 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|20093361|ref|NP_619436.1| - 3.4e-44 150.9 81.5 2.6e-20 72.7 31.0 3.4 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 gi|20093361|ref|NP_619436.1| - 1e-11 44.7 60.2 3.9e-08 32.9 16.9 4.5 1 1 3 4 4 4 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|20093361|ref|NP_619436.1| - 0.035 13.9 52.5 0.031 14.1 26.8 4.7 1 1 2 3 3 3 0 Pectate lyase superfamily protein Pep_M12B_propep PF01562.19 gi|20093363|ref|NP_619438.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Reprolysin family propeptide DUF2072 PF09845.9 gi|20093364|ref|NP_619439.1| - 1.1e-46 158.4 0.1 1.5e-46 158.0 0.1 1.2 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|20093364|ref|NP_619439.1| - 0.0065 16.6 0.7 0.015 15.4 0.7 1.5 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|20093364|ref|NP_619439.1| - 0.015 14.8 1.3 1.5 8.4 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding AnfO_nitrog PF09582.10 gi|20093364|ref|NP_619439.1| - 0.043 13.2 2.0 0.094 12.1 0.2 1.9 1 1 1 2 2 2 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) zf-ribbon_3 PF13248.6 gi|20093364|ref|NP_619439.1| - 0.05 13.0 3.1 1.5 8.4 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|20093364|ref|NP_619439.1| - 0.061 13.2 0.4 0.11 12.5 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|20093364|ref|NP_619439.1| - 0.12 12.4 0.1 0.29 11.2 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA IDEAL PF08858.10 gi|20093364|ref|NP_619439.1| - 0.17 11.6 0.4 0.17 11.6 0.4 2.0 2 0 0 2 2 2 0 IDEAL domain DUF35_N PF12172.8 gi|20093364|ref|NP_619439.1| - 0.3 11.0 2.1 2.9 7.9 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|20093364|ref|NP_619439.1| - 0.37 10.8 2.5 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|20093364|ref|NP_619439.1| - 0.84 9.4 5.1 4.1 7.2 5.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|20093364|ref|NP_619439.1| - 1.3 9.0 4.2 6 6.9 0.6 2.4 1 1 1 2 2 2 0 Nudix N-terminal Pribosyltran PF00156.27 gi|20093365|ref|NP_619440.1| - 3.7e-20 72.0 0.0 5.1e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|20093365|ref|NP_619440.1| - 0.012 15.0 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF1724 PF08350.10 gi|20093366|ref|NP_619441.1| - 1.4e-16 60.4 0.0 2.6e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_27 PF13463.6 gi|20093366|ref|NP_619441.1| - 0.0029 18.1 0.1 0.0081 16.6 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|20093366|ref|NP_619441.1| - 0.015 15.4 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|20093366|ref|NP_619441.1| - 0.024 14.6 0.6 0.07 13.1 0.4 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|20093366|ref|NP_619441.1| - 0.089 12.4 2.0 0.21 11.2 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|20093366|ref|NP_619441.1| - 0.14 12.1 1.1 0.32 11.0 0.3 2.0 2 0 0 2 2 2 0 HTH domain Formyl_trans_N PF00551.19 gi|20093368|ref|NP_619443.1| - 2.4e-13 50.2 0.0 2.8e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Inhibitor_I42 PF09394.10 gi|20093369|ref|NP_619444.1| - 1.4e-25 89.5 0.7 6.3e-25 87.4 0.2 2.2 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 DUF3244 PF11589.8 gi|20093369|ref|NP_619444.1| - 0.093 12.8 0.5 0.75 9.9 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) SRP54 PF00448.22 gi|20093371|ref|NP_619446.1| - 3.2e-72 242.3 0.4 5.2e-72 241.6 0.4 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|20093371|ref|NP_619446.1| - 6.6e-29 100.4 6.8 2.6e-28 98.6 5.8 2.4 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|20093371|ref|NP_619446.1| - 8.2e-24 83.6 0.3 1e-20 73.7 0.1 2.8 2 0 0 2 2 2 2 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|20093371|ref|NP_619446.1| - 8.3e-07 29.1 0.0 2.7e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|20093371|ref|NP_619446.1| - 0.00026 20.9 0.1 0.00098 19.0 0.0 2.0 2 0 0 2 2 2 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|20093371|ref|NP_619446.1| - 0.00028 20.2 0.1 0.00054 19.3 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin 6PF2K PF01591.18 gi|20093371|ref|NP_619446.1| - 0.00032 20.1 0.0 0.00079 18.8 0.0 1.6 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_33 PF13671.6 gi|20093371|ref|NP_619446.1| - 0.00073 19.7 0.0 0.0015 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20093371|ref|NP_619446.1| - 0.0021 18.5 0.0 0.0039 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 gi|20093371|ref|NP_619446.1| - 0.0022 18.4 2.6 0.048 14.1 0.1 2.9 3 0 0 3 3 2 1 AAA domain cobW PF02492.19 gi|20093371|ref|NP_619446.1| - 0.0027 17.3 0.4 0.018 14.6 0.2 2.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|20093371|ref|NP_619446.1| - 0.0082 15.1 0.0 0.023 13.7 0.0 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 gi|20093371|ref|NP_619446.1| - 0.0093 15.7 0.4 0.052 13.2 0.1 2.3 2 0 0 2 2 2 1 Thymidylate kinase KTI12 PF08433.10 gi|20093371|ref|NP_619446.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.14 gi|20093371|ref|NP_619446.1| - 0.012 15.6 0.1 0.024 14.5 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|20093371|ref|NP_619446.1| - 0.018 15.3 0.0 0.054 13.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain PFOR_II PF17147.4 gi|20093371|ref|NP_619446.1| - 0.039 14.3 0.2 0.52 10.6 0.0 2.8 3 0 0 3 3 2 0 Pyruvate:ferredoxin oxidoreductase core domain II ArsA_ATPase PF02374.15 gi|20093371|ref|NP_619446.1| - 0.042 13.0 5.6 0.7 9.0 0.7 2.6 2 1 0 2 2 2 0 Anion-transporting ATPase AAA_5 PF07728.14 gi|20093371|ref|NP_619446.1| - 0.042 13.8 1.4 1.9 8.5 0.1 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|20093371|ref|NP_619446.1| - 0.071 13.2 0.1 0.26 11.4 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|20093371|ref|NP_619446.1| - 0.08 12.7 0.1 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|20093371|ref|NP_619446.1| - 0.13 12.9 0.0 0.42 11.2 0.0 2.0 2 1 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|20093371|ref|NP_619446.1| - 0.19 11.7 0.1 0.33 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|20093371|ref|NP_619446.1| - 0.24 11.6 0.5 0.86 9.8 0.5 2.0 1 1 0 1 1 1 0 AAA domain PKD PF00801.20 gi|20093372|ref|NP_619447.1| - 1.1e-150 489.7 145.1 1.2e-15 57.1 5.7 14.0 13 0 0 13 13 13 12 PKD domain DUF3344 PF11824.8 gi|20093372|ref|NP_619447.1| - 7.8e-136 452.2 64.1 4.4e-77 259.4 18.9 7.9 7 3 1 8 8 5 3 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|20093372|ref|NP_619447.1| - 6.3e-44 148.4 24.6 1.2e-24 86.5 11.4 8.9 8 1 0 8 8 8 2 CARDB DUF2341 PF10102.9 gi|20093372|ref|NP_619447.1| - 2.9e-43 146.3 0.9 2.8e-22 79.1 0.0 7.7 8 0 0 8 8 7 2 Domain of unknown function (DUF2341) PKD_3 PF16820.5 gi|20093372|ref|NP_619447.1| - 4.7e-17 61.5 62.1 0.08 12.7 0.2 14.0 14 0 0 14 14 14 10 PKD-like domain Big_2 PF02368.18 gi|20093372|ref|NP_619447.1| - 6.5e-09 35.6 4.9 6.5e-09 35.6 4.9 9.0 10 0 0 10 10 8 1 Bacterial Ig-like domain (group 2) MG2 PF01835.19 gi|20093372|ref|NP_619447.1| - 2.6e-06 27.8 47.4 4.3 7.9 0.3 12.8 9 2 4 13 13 13 4 MG2 domain Big_1 PF02369.16 gi|20093372|ref|NP_619447.1| - 0.0015 18.5 3.7 0.0015 18.5 3.7 13.5 17 0 0 17 17 16 1 Bacterial Ig-like domain (group 1) Lysyl_oxidase PF01186.17 gi|20093372|ref|NP_619447.1| - 0.052 13.2 0.6 0.81 9.3 0.1 2.5 2 0 0 2 2 2 0 Lysyl oxidase EF-hand_6 PF13405.6 gi|20093372|ref|NP_619447.1| - 0.17 11.9 4.5 0.15 12.1 0.5 3.1 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|20093372|ref|NP_619447.1| - 0.33 10.6 6.0 0.11 12.2 1.7 2.5 2 0 0 2 2 2 0 EF hand Dockerin_1 PF00404.18 gi|20093372|ref|NP_619447.1| - 0.44 10.8 2.6 2.7 8.3 0.1 3.2 3 0 0 3 3 3 0 Dockerin type I domain CBM60 PF16841.5 gi|20093372|ref|NP_619447.1| - 6.3 7.3 16.4 4.7 7.7 0.6 7.3 8 0 0 8 8 7 0 Ca-dependent carbohydrate-binding module xylan-binding PKD PF00801.20 gi|20093373|ref|NP_619448.1| - 2.1e-63 210.1 63.3 2.1e-15 56.3 4.8 6.6 6 0 0 6 6 6 5 PKD domain PQQ_3 PF13570.6 gi|20093373|ref|NP_619448.1| - 2.2e-43 145.7 31.9 8.4e-07 29.3 0.0 9.1 8 0 0 8 8 8 8 PQQ-like domain DUF3344 PF11824.8 gi|20093373|ref|NP_619448.1| - 2.5e-32 112.6 14.4 2.5e-32 112.6 14.4 4.1 3 2 0 3 3 2 1 Protein of unknown function (DUF3344) PQQ_2 PF13360.6 gi|20093373|ref|NP_619448.1| - 7.8e-32 110.7 0.1 8.9e-18 64.7 0.0 3.4 1 1 2 3 3 3 3 PQQ-like domain CARDB PF07705.11 gi|20093373|ref|NP_619448.1| - 7.1e-25 87.2 3.2 7.1e-25 87.2 3.2 4.9 6 0 0 6 6 4 1 CARDB PQQ PF01011.21 gi|20093373|ref|NP_619448.1| - 3.2e-22 77.3 29.3 0.00053 19.8 0.5 7.7 8 0 0 8 8 8 6 PQQ enzyme repeat PKD_3 PF16820.5 gi|20093373|ref|NP_619448.1| - 1.7e-05 24.5 15.0 0.63 9.8 0.1 6.0 5 0 0 5 5 5 2 PKD-like domain HA1 PF18239.1 gi|20093373|ref|NP_619448.1| - 0.00024 20.9 2.5 4.5 7.2 0.1 5.3 5 0 0 5 5 5 1 Hemagglutinin I Reg_prop PF07494.11 gi|20093373|ref|NP_619448.1| - 0.00057 19.8 5.2 52 4.6 0.0 7.5 8 0 0 8 8 7 0 Two component regulator propeller EF-hand_6 PF13405.6 gi|20093373|ref|NP_619448.1| - 0.013 15.4 0.8 0.057 13.4 0.3 2.4 2 0 0 2 2 2 0 EF-hand domain DUF4981 PF16353.5 gi|20093373|ref|NP_619448.1| - 0.013 15.9 0.1 0.22 12.0 0.1 2.9 2 0 0 2 2 2 0 Domain of unknown function(DUF4981) EF-hand_1 PF00036.32 gi|20093373|ref|NP_619448.1| - 0.22 11.2 6.9 0.016 14.7 1.2 2.2 2 0 0 2 2 2 0 EF hand EF-hand_8 PF13833.6 gi|20093373|ref|NP_619448.1| - 0.38 10.6 2.3 1 9.3 2.3 1.8 1 0 0 1 1 1 0 EF-hand domain pair ASH PF15780.5 gi|20093373|ref|NP_619448.1| - 0.98 9.7 11.2 0.12 12.6 0.2 4.6 4 1 1 5 5 5 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin MG2 PF01835.19 gi|20093373|ref|NP_619448.1| - 4 8.0 10.9 24 5.5 0.1 4.9 4 1 0 5 5 5 0 MG2 domain Ig_3 PF13927.6 gi|20093373|ref|NP_619448.1| - 8.7 7.0 19.2 2.7 8.7 0.8 6.6 6 0 0 6 6 6 0 Immunoglobulin domain GATase PF00117.28 gi|20093374|ref|NP_619449.1| - 3.3e-42 144.4 0.0 3.7e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|20093374|ref|NP_619449.1| - 1.9e-13 50.7 1.6 4.9e-12 46.1 0.7 2.7 1 1 1 2 2 2 1 Peptidase C26 DeoC PF01791.9 gi|20093375|ref|NP_619450.1| - 1.5e-63 214.6 0.1 1.7e-63 214.4 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHQS PF01959.16 gi|20093376|ref|NP_619451.1| - 1.3e-146 488.1 0.7 1.5e-146 487.9 0.7 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Peripla_BP_4 PF13407.6 gi|20093376|ref|NP_619451.1| - 0.0092 15.6 1.0 3.6 7.1 0.0 2.9 3 0 0 3 3 3 2 Periplasmic binding protein domain UPF0086 PF01868.16 gi|20093376|ref|NP_619451.1| - 0.01 15.7 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function UPF0086 QRPTase_C PF01729.19 gi|20093376|ref|NP_619451.1| - 0.014 15.2 0.0 0.035 13.9 0.0 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DHquinase_I PF01487.15 gi|20093377|ref|NP_619452.1| - 1.7e-56 192.0 0.2 2e-56 191.8 0.2 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase HMGL-like PF00682.19 gi|20093377|ref|NP_619452.1| - 0.0016 18.1 0.3 1.9 8.0 0.0 2.5 2 0 0 2 2 2 2 HMGL-like PEGA PF08308.11 gi|20093377|ref|NP_619452.1| - 0.015 15.2 0.1 0.25 11.2 0.1 2.3 2 0 0 2 2 2 0 PEGA domain Shikimate_dh_N PF08501.11 gi|20093378|ref|NP_619453.1| - 1.6e-24 85.9 0.0 4.4e-24 84.6 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|20093378|ref|NP_619453.1| - 3e-14 52.5 0.5 7e-14 51.3 0.5 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|20093378|ref|NP_619453.1| - 7.1e-12 45.6 0.1 1.2e-11 44.8 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|20093378|ref|NP_619453.1| - 0.00011 21.6 0.5 0.00067 19.1 0.4 2.2 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20093378|ref|NP_619453.1| - 0.00012 22.5 0.3 0.00024 21.6 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|20093378|ref|NP_619453.1| - 0.00034 20.9 0.1 0.00051 20.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|20093378|ref|NP_619453.1| - 0.00057 20.3 0.2 0.00082 19.8 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding adh_short PF00106.25 gi|20093378|ref|NP_619453.1| - 0.00077 19.0 2.2 0.0016 17.9 2.2 1.6 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|20093378|ref|NP_619453.1| - 0.0017 18.6 1.0 0.0037 17.5 1.0 1.6 1 1 0 1 1 1 1 TrkA-N domain Pyr_redox_3 PF13738.6 gi|20093378|ref|NP_619453.1| - 0.0019 17.5 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|20093378|ref|NP_619453.1| - 0.009 15.7 0.3 0.018 14.7 0.2 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|20093378|ref|NP_619453.1| - 0.01 15.1 0.2 0.013 14.7 0.2 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.12 gi|20093378|ref|NP_619453.1| - 0.06 12.9 0.1 0.099 12.2 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Ldh_1_N PF00056.23 gi|20093378|ref|NP_619453.1| - 0.064 13.4 0.2 0.13 12.4 0.2 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|20093378|ref|NP_619453.1| - 0.11 11.7 3.3 0.23 10.7 3.3 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PDH PF02153.17 gi|20093379|ref|NP_619454.1| - 6.6e-56 189.2 0.0 9.1e-56 188.7 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|20093379|ref|NP_619454.1| - 7e-09 36.0 0.0 1.6e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|20093379|ref|NP_619454.1| - 7.7e-07 29.6 0.0 3.1e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|20093379|ref|NP_619454.1| - 2.3e-05 23.8 0.0 5.7e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|20093379|ref|NP_619454.1| - 0.0053 16.8 0.0 0.027 14.5 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase CoA_binding PF02629.19 gi|20093379|ref|NP_619454.1| - 0.0062 17.2 0.1 0.045 14.4 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain Epimerase PF01370.21 gi|20093379|ref|NP_619454.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|20093379|ref|NP_619454.1| - 0.082 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 NmrA-like family NAD_Gly3P_dh_N PF01210.23 gi|20093379|ref|NP_619454.1| - 0.15 12.0 2.1 4.5 7.2 2.1 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HEAT_2 PF13646.6 gi|20093380|ref|NP_619455.1| - 2.3e-50 168.9 19.1 1.7e-15 57.1 0.2 7.3 3 2 4 7 7 7 6 HEAT repeats HEAT_PBS PF03130.16 gi|20093380|ref|NP_619455.1| - 1.2e-44 146.4 16.2 1.9e-05 24.9 0.0 10.8 10 0 0 10 10 10 8 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|20093380|ref|NP_619455.1| - 3.3e-19 67.3 1.6 0.0024 18.0 0.0 7.5 8 0 0 8 8 8 4 HEAT repeat HEAT_EZ PF13513.6 gi|20093380|ref|NP_619455.1| - 2.2e-12 47.2 9.8 0.0041 17.6 0.0 7.4 4 2 3 7 7 7 3 HEAT-like repeat Arm PF00514.23 gi|20093380|ref|NP_619455.1| - 1.6e-07 31.1 0.2 0.64 10.2 0.0 6.5 5 1 2 7 7 7 2 Armadillo/beta-catenin-like repeat ERAP1_C PF11838.8 gi|20093380|ref|NP_619455.1| - 2.6e-06 27.2 1.0 9.5e-06 25.4 0.2 2.2 2 1 0 2 2 2 1 ERAP1-like C-terminal domain Vitellogenin_N PF01347.22 gi|20093380|ref|NP_619455.1| - 3.5e-06 25.7 2.2 0.049 12.0 0.0 3.6 2 1 2 4 4 4 2 Lipoprotein amino terminal region Cnd1 PF12717.7 gi|20093380|ref|NP_619455.1| - 0.00013 22.1 0.1 0.31 11.1 0.0 3.9 2 1 2 4 4 4 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|20093380|ref|NP_619455.1| - 0.003 16.2 0.2 0.026 13.1 0.0 2.4 2 1 1 3 3 3 1 Adaptin N terminal region IBN_N PF03810.19 gi|20093380|ref|NP_619455.1| - 0.028 14.3 0.0 8.1 6.4 0.0 3.8 5 0 0 5 5 5 0 Importin-beta N-terminal domain ABC_tran PF00005.27 gi|20093381|ref|NP_619456.1| - 8.7e-30 104.0 0.0 1.2e-29 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20093381|ref|NP_619456.1| - 0.00019 21.3 0.4 0.038 13.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|20093381|ref|NP_619456.1| - 0.0005 20.3 0.4 0.0017 18.7 0.2 2.0 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.19 gi|20093381|ref|NP_619456.1| - 0.0019 17.7 0.0 0.004 16.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|20093381|ref|NP_619456.1| - 0.0098 15.6 0.4 0.018 14.8 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|20093381|ref|NP_619456.1| - 0.013 15.9 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 gi|20093381|ref|NP_619456.1| - 0.016 15.3 1.2 0.027 14.6 1.2 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain MobB PF03205.14 gi|20093381|ref|NP_619456.1| - 0.021 14.7 0.3 0.042 13.8 0.3 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|20093381|ref|NP_619456.1| - 0.029 14.1 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|20093381|ref|NP_619456.1| - 0.033 13.5 0.3 0.2 11.0 0.2 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|20093381|ref|NP_619456.1| - 0.045 12.9 0.2 0.076 12.2 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|20093381|ref|NP_619456.1| - 0.048 13.6 0.4 0.083 12.8 0.4 1.3 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|20093381|ref|NP_619456.1| - 0.067 13.1 0.3 0.11 12.3 0.3 1.4 1 0 0 1 1 1 0 RsgA GTPase PhoH PF02562.16 gi|20093381|ref|NP_619456.1| - 0.094 12.2 0.2 0.23 10.9 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_5 PF07728.14 gi|20093381|ref|NP_619456.1| - 0.096 12.7 0.2 0.31 11.0 0.2 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|20093381|ref|NP_619456.1| - 0.1 13.0 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|20093381|ref|NP_619456.1| - 0.12 12.9 0.1 0.17 12.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|20093381|ref|NP_619456.1| - 0.2 11.3 0.0 0.56 9.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|20093381|ref|NP_619456.1| - 0.22 10.2 2.3 6.9 5.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|20093382|ref|NP_619457.1| - 7.3e-27 94.5 0.0 1.1e-26 94.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|20093382|ref|NP_619457.1| - 8.9e-14 51.8 0.2 2e-13 50.6 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|20093382|ref|NP_619457.1| - 0.00011 22.1 0.8 0.0069 16.2 0.3 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|20093382|ref|NP_619457.1| - 0.00051 19.5 1.2 0.008 15.6 1.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|20093382|ref|NP_619457.1| - 0.00058 20.3 0.1 0.00083 19.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|20093382|ref|NP_619457.1| - 0.016 15.5 1.0 0.079 13.2 1.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|20093382|ref|NP_619457.1| - 0.017 14.9 0.5 0.033 13.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|20093382|ref|NP_619457.1| - 0.018 15.0 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|20093382|ref|NP_619457.1| - 0.019 14.6 0.1 0.049 13.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|20093382|ref|NP_619457.1| - 0.029 14.4 0.0 0.057 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|20093382|ref|NP_619457.1| - 0.036 13.3 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|20093382|ref|NP_619457.1| - 0.037 13.9 0.0 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|20093382|ref|NP_619457.1| - 0.084 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MeaB PF03308.16 gi|20093382|ref|NP_619457.1| - 0.098 11.6 0.0 0.38 9.7 0.0 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_15 PF13175.6 gi|20093382|ref|NP_619457.1| - 0.72 9.5 2.3 8.4 6.0 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|20093383|ref|NP_619458.1| - 4.7e-18 65.6 15.2 4.7e-18 65.6 15.2 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|20093383|ref|NP_619458.1| - 1.7e-05 24.7 1.2 1.7e-05 24.7 1.2 3.8 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|20093384|ref|NP_619459.1| - 3.6e-31 108.3 5.1 6e-31 107.6 5.1 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|20093385|ref|NP_619460.1| - 2.8e-89 299.7 3.7 3.3e-89 299.5 3.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Glyoxalase_3 PF13468.6 gi|20093385|ref|NP_619460.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Glyoxalase-like domain F_actin_cap_B PF01115.17 gi|20093385|ref|NP_619460.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 F-actin capping protein, beta subunit FmdE PF02663.14 gi|20093386|ref|NP_619461.1| - 1.2e-43 148.3 0.0 1.5e-43 148.0 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|20093386|ref|NP_619461.1| - 6.8e-09 35.5 1.6 2.2e-08 33.9 1.6 1.9 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|20093386|ref|NP_619461.1| - 0.0087 16.3 0.9 0.02 15.1 0.9 1.6 1 0 0 1 1 1 1 LIM domain OrfB_Zn_ribbon PF07282.11 gi|20093386|ref|NP_619461.1| - 0.0092 15.9 0.3 0.024 14.5 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-C2HC_2 PF13913.6 gi|20093386|ref|NP_619461.1| - 0.023 14.6 0.1 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.10 gi|20093386|ref|NP_619461.1| - 0.034 14.3 1.1 0.23 11.6 1.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|20093386|ref|NP_619461.1| - 0.31 11.0 3.3 0.53 10.3 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Peripla_BP_2 PF01497.18 gi|20093388|ref|NP_619463.1| - 4.8e-22 78.7 0.5 6.9e-22 78.2 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|20093389|ref|NP_619464.1| - 6.7e-90 301.2 26.4 8.2e-90 301.0 26.4 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|20093389|ref|NP_619464.1| - 3.2e-06 26.9 16.6 5e-06 26.2 16.6 1.3 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|20093390|ref|NP_619465.1| - 1.8e-31 109.5 0.0 2.7e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|20093390|ref|NP_619465.1| - 1.2e-12 48.3 0.2 1e-05 25.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|20093390|ref|NP_619465.1| - 3e-07 30.5 4.9 1.7e-06 28.0 0.9 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|20093390|ref|NP_619465.1| - 7.7e-07 28.8 1.0 0.00011 21.8 1.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|20093390|ref|NP_619465.1| - 8.8e-05 22.6 0.1 0.0023 17.9 0.0 2.5 2 1 1 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|20093390|ref|NP_619465.1| - 0.00028 20.8 0.2 0.0006 19.8 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|20093390|ref|NP_619465.1| - 0.00035 21.1 1.0 0.00047 20.7 1.0 1.6 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|20093390|ref|NP_619465.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|20093390|ref|NP_619465.1| - 0.0028 18.1 0.7 0.017 15.5 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|20093390|ref|NP_619465.1| - 0.0031 17.3 0.0 0.0069 16.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|20093390|ref|NP_619465.1| - 0.0039 17.4 1.0 0.026 14.8 1.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|20093390|ref|NP_619465.1| - 0.0062 16.9 0.0 0.021 15.2 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|20093390|ref|NP_619465.1| - 0.0098 15.8 0.1 0.03 14.3 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|20093390|ref|NP_619465.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|20093390|ref|NP_619465.1| - 0.014 14.9 0.2 0.091 12.3 0.0 2.2 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.22 gi|20093390|ref|NP_619465.1| - 0.016 14.4 0.0 0.031 13.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|20093390|ref|NP_619465.1| - 0.016 15.3 0.0 0.035 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|20093390|ref|NP_619465.1| - 0.017 15.2 0.0 0.068 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|20093390|ref|NP_619465.1| - 0.019 14.7 0.1 0.16 11.7 0.0 2.4 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|20093390|ref|NP_619465.1| - 0.02 14.6 0.1 0.048 13.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|20093390|ref|NP_619465.1| - 0.023 14.6 0.1 0.046 13.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|20093390|ref|NP_619465.1| - 0.024 14.0 0.5 0.067 12.5 0.0 2.1 3 0 0 3 3 3 0 KaiC AAA_35 PF14516.6 gi|20093390|ref|NP_619465.1| - 0.029 13.2 0.0 0.044 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_ATPase PF09818.9 gi|20093390|ref|NP_619465.1| - 0.031 13.1 0.2 0.96 8.2 0.2 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PIF1 PF05970.14 gi|20093390|ref|NP_619465.1| - 0.052 12.7 0.1 0.075 12.2 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase KAP_NTPase PF07693.14 gi|20093390|ref|NP_619465.1| - 0.053 12.8 0.0 0.067 12.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain NTPase_1 PF03266.15 gi|20093390|ref|NP_619465.1| - 0.057 13.3 0.5 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.12 gi|20093390|ref|NP_619465.1| - 0.061 12.6 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|20093390|ref|NP_619465.1| - 0.066 13.5 0.1 0.13 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|20093390|ref|NP_619465.1| - 0.087 11.9 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|20093390|ref|NP_619465.1| - 0.11 12.0 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|20093390|ref|NP_619465.1| - 0.13 12.7 0.0 0.44 10.9 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|20093390|ref|NP_619465.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|20093390|ref|NP_619465.1| - 0.14 11.7 0.2 0.28 10.8 0.0 1.5 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|20093390|ref|NP_619465.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIM PF00121.18 gi|20093391|ref|NP_619466.1| - 1.1e-11 44.6 0.0 1.3e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|20093391|ref|NP_619466.1| - 8.6e-05 22.0 0.9 0.00044 19.6 0.4 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.6 gi|20093391|ref|NP_619466.1| - 0.012 15.7 0.2 3.5 7.8 0.1 2.3 2 0 0 2 2 2 0 HAD-hyrolase-like NMO PF03060.15 gi|20093391|ref|NP_619466.1| - 0.016 14.6 1.2 0.027 13.9 1.2 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase FMN_dh PF01070.18 gi|20093391|ref|NP_619466.1| - 0.043 12.8 0.6 0.043 12.8 0.6 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Hydrolase PF00702.26 gi|20093391|ref|NP_619466.1| - 0.054 13.8 0.2 0.14 12.4 0.1 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase His_biosynth PF00977.21 gi|20093391|ref|NP_619466.1| - 0.075 12.5 0.2 0.17 11.4 0.1 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein IGPS PF00218.21 gi|20093391|ref|NP_619466.1| - 0.13 11.5 0.0 0.24 10.5 0.0 1.5 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Fae PF08714.11 gi|20093392|ref|NP_619467.1| - 1e-71 240.0 0.1 2.1e-71 239.1 0.1 1.5 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|20093392|ref|NP_619467.1| - 1.2e-20 74.1 2.5 2.6e-19 69.7 2.9 2.4 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|20093392|ref|NP_619467.1| - 0.0036 16.7 3.4 0.0042 16.5 1.5 2.1 2 1 0 2 2 2 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|20093392|ref|NP_619467.1| - 0.018 14.8 0.1 0.035 13.9 0.1 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Cas_csx3 PF09620.10 gi|20093392|ref|NP_619467.1| - 0.067 13.1 0.1 17 5.4 0.1 2.9 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_csx3) HhH-GPD PF00730.25 gi|20093393|ref|NP_619468.1| - 4.5e-22 78.5 0.0 6.3e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|20093393|ref|NP_619468.1| - 1.7e-11 43.4 0.0 4.3e-10 38.9 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|20093393|ref|NP_619468.1| - 6.1e-05 23.6 0.1 0.24 12.0 0.0 2.5 1 1 2 3 3 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|20093393|ref|NP_619468.1| - 0.00025 21.3 3.7 0.00025 21.3 3.7 1.7 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.7 gi|20093393|ref|NP_619468.1| - 0.0026 17.8 0.0 1.1 9.4 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|20093393|ref|NP_619468.1| - 0.078 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Yip1 PF04893.17 gi|20093394|ref|NP_619469.1| - 1.2e-24 87.0 22.8 1.2e-24 87.0 22.8 1.4 1 1 0 1 1 1 1 Yip1 domain TPR_12 PF13424.6 gi|20093395|ref|NP_619470.1| - 2.4e-69 229.6 11.8 3.4e-18 65.7 0.2 3.7 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|20093395|ref|NP_619470.1| - 3e-34 114.3 8.6 9.4e-08 31.6 0.1 6.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|20093395|ref|NP_619470.1| - 3.9e-33 111.0 0.7 9.7e-07 28.4 0.0 4.9 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|20093395|ref|NP_619470.1| - 2.3e-30 103.1 16.0 1.4e-07 31.0 0.2 6.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|20093395|ref|NP_619470.1| - 3.8e-24 83.8 0.8 0.00024 20.9 0.0 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|20093395|ref|NP_619470.1| - 6.9e-23 78.9 16.5 2.5e-05 24.2 0.1 6.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|20093395|ref|NP_619470.1| - 3.2e-21 74.7 21.2 3.5e-06 26.6 0.4 5.2 6 0 0 6 6 4 4 TPR repeat SHNi-TPR PF10516.9 gi|20093395|ref|NP_619470.1| - 1e-16 60.1 1.2 0.00089 18.7 0.0 5.0 4 0 0 4 4 4 4 SHNi-TPR TPR_16 PF13432.6 gi|20093395|ref|NP_619470.1| - 7e-13 49.0 0.0 0.00048 20.7 0.0 4.4 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|20093395|ref|NP_619470.1| - 2.8e-12 46.7 0.2 1.2e-11 44.6 0.2 1.8 1 1 0 1 1 1 1 MalT-like TPR region TPR_14 PF13428.6 gi|20093395|ref|NP_619470.1| - 2.7e-11 43.3 0.0 0.7 10.9 0.0 6.1 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|20093395|ref|NP_619470.1| - 4.6e-11 42.6 1.0 0.18 12.5 0.0 5.9 5 1 0 5 5 5 2 Tetratricopeptide repeat SNAP PF14938.6 gi|20093395|ref|NP_619470.1| - 3.9e-10 39.6 5.1 1.1e-05 25.0 0.6 2.9 2 1 1 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_3 PF07720.12 gi|20093395|ref|NP_619470.1| - 1.2e-08 34.7 9.4 0.099 12.7 0.1 5.0 4 0 0 4 4 4 4 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|20093395|ref|NP_619470.1| - 1.4e-08 34.7 0.0 0.27 11.3 0.0 4.6 1 1 3 4 4 4 3 Anaphase-promoting complex subunit 5 TPR_17 PF13431.6 gi|20093395|ref|NP_619470.1| - 1.4e-08 34.5 0.5 2.9 8.5 0.0 5.0 4 0 0 4 4 4 1 Tetratricopeptide repeat MIT PF04212.18 gi|20093395|ref|NP_619470.1| - 2.6e-08 33.8 18.6 0.42 10.7 0.2 6.0 5 0 0 5 5 5 4 MIT (microtubule interacting and transport) domain DUF627 PF04781.12 gi|20093395|ref|NP_619470.1| - 5.5e-08 32.8 5.5 0.29 11.2 0.3 5.1 3 2 2 5 5 5 3 Protein of unknown function (DUF627) TPR_19 PF14559.6 gi|20093395|ref|NP_619470.1| - 1.4e-07 31.9 2.6 0.009 16.5 0.1 4.2 4 0 0 4 4 3 2 Tetratricopeptide repeat IstB_IS21 PF01695.17 gi|20093395|ref|NP_619470.1| - 1e-06 28.6 0.0 2.4e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein RPN7 PF10602.9 gi|20093395|ref|NP_619470.1| - 4.3e-06 26.6 2.7 4.3e-06 26.6 2.7 4.6 3 1 3 6 6 5 2 26S proteasome subunit RPN7 ANAPC3 PF12895.7 gi|20093395|ref|NP_619470.1| - 5.9e-05 23.2 7.7 0.14 12.4 0.5 4.6 2 1 3 5 5 4 2 Anaphase-promoting complex, cyclosome, subunit 3 AAA_22 PF13401.6 gi|20093395|ref|NP_619470.1| - 0.00011 22.5 0.2 0.00052 20.3 0.1 2.2 2 1 0 2 2 1 1 AAA domain TPR_4 PF07721.14 gi|20093395|ref|NP_619470.1| - 0.00012 22.4 0.0 33 5.5 0.0 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat Rapsyn_N PF10579.9 gi|20093395|ref|NP_619470.1| - 0.00013 22.0 5.6 0.011 15.8 0.1 4.3 4 1 0 5 5 4 1 Rapsyn N-terminal myristoylation and linker region NACHT PF05729.12 gi|20093395|ref|NP_619470.1| - 0.00013 21.9 0.1 0.013 15.5 0.1 2.4 1 1 0 1 1 1 1 NACHT domain TPR_9 PF13371.6 gi|20093395|ref|NP_619470.1| - 0.00059 19.9 0.0 2.6 8.3 0.0 4.3 2 1 2 4 4 3 1 Tetratricopeptide repeat NB-ARC PF00931.22 gi|20093395|ref|NP_619470.1| - 0.00072 18.8 0.9 0.21 10.7 0.1 2.8 1 1 1 2 2 2 1 NB-ARC domain Enolase_C PF00113.22 gi|20093395|ref|NP_619470.1| - 0.001 18.4 2.0 2.1 7.5 0.0 3.8 1 1 1 3 3 3 1 Enolase, C-terminal TIM barrel domain TRL PF13146.6 gi|20093395|ref|NP_619470.1| - 0.0018 18.5 2.6 3.7 7.9 0.1 4.1 1 1 3 4 4 4 1 TRL-like protein family AAA_14 PF13173.6 gi|20093395|ref|NP_619470.1| - 0.0019 18.3 0.7 0.0057 16.7 0.7 1.8 1 0 0 1 1 1 1 AAA domain DUF3856 PF12968.7 gi|20093395|ref|NP_619470.1| - 0.0026 17.9 1.4 0.095 12.8 0.5 3.1 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.6 gi|20093395|ref|NP_619470.1| - 0.0044 17.1 4.0 5.8 7.1 0.0 4.6 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat SPO22 PF08631.10 gi|20093395|ref|NP_619470.1| - 0.0053 16.3 1.0 3.7 7.0 0.1 2.9 1 1 0 2 2 2 1 Meiosis protein SPO22/ZIP4 like AAA_19 PF13245.6 gi|20093395|ref|NP_619470.1| - 0.0085 16.4 2.0 15 6.0 0.2 4.1 2 2 0 2 2 2 0 AAA domain LemA PF04011.12 gi|20093395|ref|NP_619470.1| - 0.012 15.5 5.1 25 4.7 0.1 4.5 4 0 0 4 4 4 0 LemA family TPR_21 PF09976.9 gi|20093395|ref|NP_619470.1| - 0.012 15.3 4.3 6.8 6.3 1.5 3.4 1 1 2 3 3 3 0 Tetratricopeptide repeat-like domain HemY_N PF07219.13 gi|20093395|ref|NP_619470.1| - 0.013 15.7 0.1 71 3.7 0.0 4.4 1 1 3 4 4 4 0 HemY protein N-terminus RsgA_GTPase PF03193.16 gi|20093395|ref|NP_619470.1| - 0.019 14.8 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|20093395|ref|NP_619470.1| - 0.023 14.6 1.4 0.15 12.0 1.4 2.2 1 1 0 1 1 1 0 Rad17 P-loop domain PhoH PF02562.16 gi|20093395|ref|NP_619470.1| - 0.027 13.9 0.1 0.16 11.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Peptidase_M13 PF01431.21 gi|20093395|ref|NP_619470.1| - 0.036 13.7 2.5 1.9 8.1 0.5 3.1 1 1 2 3 3 3 0 Peptidase family M13 AAA_16 PF13191.6 gi|20093395|ref|NP_619470.1| - 0.041 14.3 0.0 0.22 11.9 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain DUF4810 PF16068.5 gi|20093395|ref|NP_619470.1| - 0.12 12.9 8.4 32 5.2 0.2 5.0 3 2 0 3 3 3 0 Domain of unknown function (DUF4810) DUF2225 PF09986.9 gi|20093395|ref|NP_619470.1| - 0.14 11.9 13.2 0.14 11.8 1.5 3.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) IFN-gamma PF00714.17 gi|20093395|ref|NP_619470.1| - 2.4 8.0 8.6 0.86 9.4 0.1 3.1 3 0 0 3 3 2 0 Interferon gamma HMGL-like PF00682.19 gi|20093396|ref|NP_619471.1| - 1.1e-85 287.4 1.8 1.1e-85 287.4 1.8 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|20093396|ref|NP_619471.1| - 4.8e-36 123.6 1.5 1.5e-35 122.0 1.5 1.9 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TatD_DNase PF01026.21 gi|20093397|ref|NP_619472.1| - 2.5e-65 220.4 0.0 2.8e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|20093397|ref|NP_619472.1| - 1.3e-05 25.1 0.1 2.3e-05 24.4 0.1 1.6 1 1 0 1 1 1 1 Amidohydrolase Lactamase_B PF00753.27 gi|20093398|ref|NP_619473.1| - 4.1e-26 92.2 0.1 5.2e-26 91.9 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|20093398|ref|NP_619473.1| - 1.5e-06 27.9 0.0 2e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|20093398|ref|NP_619473.1| - 0.049 13.1 0.1 0.07 12.6 0.1 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|20093398|ref|NP_619473.1| - 0.076 12.5 0.0 0.35 10.3 0.0 1.8 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Radical_SAM_N PF08497.10 gi|161484932|ref|NP_619474.2| - 3.8e-127 423.6 0.0 5.1e-127 423.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|161484932|ref|NP_619474.2| - 2.6e-31 109.0 0.1 5e-31 108.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|161484932|ref|NP_619474.2| - 1.3e-17 64.6 1.1 3.2e-16 60.1 0.3 3.0 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|161484932|ref|NP_619474.2| - 6.5e-05 23.0 0.0 0.95 9.5 0.0 3.7 4 1 0 4 4 4 2 B12 binding domain DGF-1_C PF11040.8 gi|161484932|ref|NP_619474.2| - 0.015 15.3 0.0 0.037 14.0 0.0 1.7 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus DUF1724 PF08350.10 gi|20093400|ref|NP_619475.1| - 0.00012 22.2 0.0 0.00025 21.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|20093400|ref|NP_619475.1| - 0.00041 20.3 0.0 0.00092 19.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|20093400|ref|NP_619475.1| - 0.00092 19.2 0.1 0.0016 18.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|20093400|ref|NP_619475.1| - 0.0035 17.2 0.1 0.0059 16.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Methyltransf_11 PF08241.12 gi|20093401|ref|NP_619476.1| - 9.1e-13 48.7 0.0 1.3e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|20093401|ref|NP_619476.1| - 1.2e-11 45.1 0.0 2e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093401|ref|NP_619476.1| - 2.7e-10 40.2 0.0 3.7e-10 39.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|20093401|ref|NP_619476.1| - 1e-08 34.8 0.0 1.3e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|20093401|ref|NP_619476.1| - 9e-08 32.1 0.0 1.2e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|20093401|ref|NP_619476.1| - 2.3e-07 30.8 0.0 3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093401|ref|NP_619476.1| - 1.2e-06 29.2 0.0 1.7e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|20093401|ref|NP_619476.1| - 0.0015 18.3 0.0 0.002 17.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.16 gi|20093401|ref|NP_619476.1| - 0.0048 16.7 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TehB PF03848.14 gi|20093401|ref|NP_619476.1| - 0.0063 15.9 0.0 0.0082 15.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.19 gi|20093401|ref|NP_619476.1| - 0.012 15.7 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|20093401|ref|NP_619476.1| - 0.016 15.2 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|20093401|ref|NP_619476.1| - 0.022 14.3 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain GidB PF02527.15 gi|20093401|ref|NP_619476.1| - 0.032 13.6 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|20093401|ref|NP_619476.1| - 0.075 12.3 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|20093401|ref|NP_619476.1| - 0.084 11.9 0.0 0.17 10.9 0.0 1.8 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.9 gi|20093401|ref|NP_619476.1| - 0.086 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase MFS_1 PF07690.16 gi|20093402|ref|NP_619477.1| - 8.8e-49 166.3 48.3 8.8e-49 166.3 48.3 2.2 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|20093402|ref|NP_619477.1| - 3.2e-06 26.3 21.5 3.2e-06 26.3 21.5 3.3 3 0 0 3 3 3 2 Sugar (and other) transporter TrmB PF01978.19 gi|20093403|ref|NP_619478.1| - 4e-22 77.9 0.0 5.3e-22 77.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|20093403|ref|NP_619478.1| - 0.0023 17.7 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|20093403|ref|NP_619478.1| - 0.0093 15.8 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4438 PF14505.6 gi|20093405|ref|NP_619480.1| - 0.13 11.2 0.0 0.14 11.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) RVT_1 PF00078.27 gi|20093406|ref|NP_619481.1| - 1.5e-47 162.0 0.0 1.3e-46 158.9 0.0 2.0 2 0 0 2 2 2 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 gi|20093406|ref|NP_619481.1| - 1.3e-18 66.8 6.2 1.3e-18 66.8 6.2 2.1 2 0 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 gi|20093407|ref|NP_619482.1| - 1.2e-32 112.0 4.8 2.2e-32 111.1 4.8 1.5 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase RVT_1 PF00078.27 gi|20093407|ref|NP_619482.1| - 9.1e-18 64.6 0.2 1.9e-17 63.5 0.0 1.6 2 0 0 2 2 2 1 Reverse transcriptase (RNA-dependent DNA polymerase) CCG PF02754.16 gi|20093409|ref|NP_619484.1| - 7.3e-34 115.9 1.5 1.4e-15 57.3 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|20093409|ref|NP_619484.1| - 6.5e-10 39.3 3.3 6.5e-10 39.3 3.3 2.4 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|20093409|ref|NP_619484.1| - 9.4e-10 38.9 3.1 9.4e-10 38.9 3.1 3.1 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|20093409|ref|NP_619484.1| - 9.2e-08 32.6 5.7 9.2e-08 32.6 5.7 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|20093409|ref|NP_619484.1| - 8.4e-07 29.1 17.4 4.2e-06 26.8 8.4 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|20093409|ref|NP_619484.1| - 1.6e-05 24.9 10.6 1.6e-05 24.9 10.6 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|20093409|ref|NP_619484.1| - 2.4e-05 25.1 13.8 0.023 15.6 0.2 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|20093409|ref|NP_619484.1| - 0.00024 21.0 2.0 0.00024 21.0 2.0 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|20093409|ref|NP_619484.1| - 0.0008 19.1 24.6 0.0031 17.3 3.7 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|20093409|ref|NP_619484.1| - 0.0024 18.1 7.4 0.16 12.2 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|20093409|ref|NP_619484.1| - 0.0055 17.1 2.3 0.0055 17.1 2.3 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain UPF0004 PF00919.20 gi|20093409|ref|NP_619484.1| - 0.0069 16.4 0.1 0.83 9.7 0.0 2.9 2 1 1 3 3 3 1 Uncharacterized protein family UPF0004 Fer4_21 PF14697.6 gi|20093409|ref|NP_619484.1| - 0.0086 16.2 0.7 0.0086 16.2 0.7 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|20093409|ref|NP_619484.1| - 0.1 13.5 0.8 0.1 13.5 0.8 3.9 4 1 1 5 5 5 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|20093409|ref|NP_619484.1| - 5.1 6.9 9.8 6.1 6.7 0.9 2.9 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FAD-oxidase_C PF02913.19 gi|20093410|ref|NP_619485.1| - 1.4e-57 195.2 0.0 1.9e-57 194.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|20093410|ref|NP_619485.1| - 2.6e-46 156.8 0.1 4.5e-46 156.1 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain DUF5591 PF17884.1 gi|20093411|ref|NP_619486.1| - 2.9e-61 205.9 0.1 5e-61 205.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT PF01702.18 gi|20093411|ref|NP_619486.1| - 1.1e-14 54.4 0.0 6.2e-13 48.6 0.0 2.3 2 0 0 2 2 2 2 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|20093411|ref|NP_619486.1| - 1.3e-12 47.4 0.2 2.9e-12 46.4 0.2 1.6 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|20093411|ref|NP_619486.1| - 5.9e-11 42.3 0.0 1.5e-10 41.1 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Acetyltransf_1 PF00583.25 gi|20093412|ref|NP_619487.1| - 1.7e-19 70.1 0.5 2.4e-19 69.7 0.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|20093412|ref|NP_619487.1| - 4.7e-16 58.9 0.4 6.1e-16 58.5 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|20093412|ref|NP_619487.1| - 3e-14 53.2 1.4 4.3e-14 52.7 1.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|20093412|ref|NP_619487.1| - 7.2e-09 35.5 0.1 1.1e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|20093412|ref|NP_619487.1| - 1e-08 35.9 0.2 1.8e-08 35.2 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|20093412|ref|NP_619487.1| - 3.5e-07 30.3 0.0 6.6e-06 26.2 0.0 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|20093412|ref|NP_619487.1| - 1.8e-06 28.2 0.5 3.5e-06 27.2 0.5 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|20093412|ref|NP_619487.1| - 4.7e-05 23.4 0.1 8.6e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|20093412|ref|NP_619487.1| - 0.0027 17.3 0.1 0.0031 17.1 0.1 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|20093412|ref|NP_619487.1| - 0.0054 16.2 0.1 0.0094 15.4 0.1 1.5 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|20093412|ref|NP_619487.1| - 0.013 15.2 0.0 0.032 13.9 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|20093412|ref|NP_619487.1| - 0.08 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0058 PF01893.16 gi|20093413|ref|NP_619488.1| - 1.9e-30 104.9 0.9 2.2e-30 104.8 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 TRP_2 PF08344.11 gi|20093413|ref|NP_619488.1| - 0.14 12.3 0.0 0.35 11.1 0.0 1.7 2 1 0 2 2 2 0 Transient receptor ion channel II Toprim_4 PF13662.6 gi|20093414|ref|NP_619489.1| - 1.8e-12 47.6 0.1 6.1e-12 45.9 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|20093414|ref|NP_619489.1| - 2.1e-05 24.9 0.0 5.5e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|20093414|ref|NP_619489.1| - 0.0053 17.0 0.1 0.024 14.9 0.1 2.1 1 1 0 1 1 1 1 Toprim domain Pyr_redox_2 PF07992.14 gi|20093415|ref|NP_619490.1| - 5.5e-46 157.1 0.0 7.1e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|20093415|ref|NP_619490.1| - 3.4e-18 66.0 5.8 8.5e-15 55.1 0.1 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|20093415|ref|NP_619490.1| - 8.6e-13 48.1 3.1 0.00015 21.0 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_dim PF02852.22 gi|20093415|ref|NP_619490.1| - 2.3e-12 47.2 0.0 1.1e-11 44.9 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|20093415|ref|NP_619490.1| - 8.3e-11 41.7 1.8 7.3e-06 25.4 0.9 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|20093415|ref|NP_619490.1| - 7.1e-09 35.2 1.2 0.00014 21.1 0.2 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.24 gi|20093415|ref|NP_619490.1| - 8.5e-09 35.5 3.0 0.002 17.8 1.7 3.4 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|20093415|ref|NP_619490.1| - 1.1e-08 35.1 1.2 0.00061 20.0 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|20093415|ref|NP_619490.1| - 4.3e-07 29.4 0.4 0.00075 18.8 0.0 2.5 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.14 gi|20093415|ref|NP_619490.1| - 1e-06 27.7 3.7 0.031 13.0 0.1 3.6 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|20093415|ref|NP_619490.1| - 6.1e-06 25.7 0.4 0.003 16.8 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_7 PF13241.6 gi|20093415|ref|NP_619490.1| - 0.00012 22.4 0.1 0.63 10.5 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|20093415|ref|NP_619490.1| - 0.00017 21.0 0.5 0.28 10.4 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|20093415|ref|NP_619490.1| - 0.00093 18.6 1.6 0.26 10.6 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|20093415|ref|NP_619490.1| - 0.0014 17.6 0.1 0.047 12.5 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase TrkA_N PF02254.18 gi|20093415|ref|NP_619490.1| - 0.0018 18.5 0.2 0.95 9.7 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.16 gi|20093415|ref|NP_619490.1| - 0.0049 16.5 0.0 0.13 11.9 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|20093415|ref|NP_619490.1| - 0.0053 16.1 1.3 0.24 10.8 0.3 2.5 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|20093415|ref|NP_619490.1| - 0.0069 16.5 0.3 0.64 10.1 0.1 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|20093415|ref|NP_619490.1| - 0.0071 16.6 1.1 0.084 13.1 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain K_oxygenase PF13434.6 gi|20093415|ref|NP_619490.1| - 0.0088 15.2 0.0 0.17 11.0 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|20093415|ref|NP_619490.1| - 0.011 15.7 0.1 6.6 6.7 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|20093415|ref|NP_619490.1| - 0.014 14.5 0.6 1.9 7.5 0.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|20093415|ref|NP_619490.1| - 0.018 14.9 0.4 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|20093415|ref|NP_619490.1| - 0.026 15.1 0.9 2.5 8.7 0.2 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|20093415|ref|NP_619490.1| - 0.053 13.1 0.3 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.21 gi|20093415|ref|NP_619490.1| - 0.3 10.4 1.3 2.6 7.3 0.5 2.2 2 0 0 2 2 2 0 ThiF family RTC PF01137.21 gi|20093416|ref|NP_619491.1| - 6.9e-85 283.7 0.0 7.8e-85 283.6 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|20093416|ref|NP_619491.1| - 9.3e-13 48.6 0.1 1.8e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PTS_2-RNA PF01885.16 gi|20093417|ref|NP_619492.1| - 1.4e-22 80.6 0.0 1.8e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Phlebovirus_G1 PF07243.11 gi|20093417|ref|NP_619492.1| - 0.0053 15.2 0.0 0.0074 14.7 0.0 1.1 1 0 0 1 1 1 1 Phlebovirus glycoprotein G1 DUF2162 PF09930.9 gi|20093419|ref|NP_619494.1| - 7e-73 244.7 21.4 7.9e-73 244.6 21.4 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Abhydrolase_9_N PF15420.6 gi|20093419|ref|NP_619494.1| - 0.23 11.4 4.6 0.25 11.3 0.7 2.3 2 1 1 3 3 3 0 Alpha/beta-hydrolase family N-terminus DUF3180 PF11377.8 gi|20093419|ref|NP_619494.1| - 0.36 11.0 0.1 0.36 11.0 0.1 3.0 2 1 0 4 4 4 0 Protein of unknown function (DUF3180) MotA_ExbB PF01618.16 gi|20093420|ref|NP_619495.1| - 7.6e-13 48.3 0.2 1.1e-12 47.8 0.2 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.19 gi|20093420|ref|NP_619495.1| - 0.019 14.8 0.5 0.028 14.3 0.3 1.3 1 1 0 1 1 1 0 VIT family DUF2149 PF09919.9 gi|20093421|ref|NP_619496.1| - 3.7e-34 116.8 0.1 4.5e-34 116.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) VirionAssem_T7 PF11653.8 gi|20093421|ref|NP_619496.1| - 0.094 13.2 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage T7 virion assembly protein DUF5049 PF16468.5 gi|20093421|ref|NP_619496.1| - 0.16 11.9 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5049) CobN-Mg_chel PF02514.16 gi|20093422|ref|NP_619497.1| - 0 1088.9 1.1 0 1088.7 1.1 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase MFS_1 PF07690.16 gi|20093423|ref|NP_619498.1| - 1.6e-19 70.1 50.4 8.7e-14 51.2 39.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|20093423|ref|NP_619498.1| - 7.2e-05 21.8 23.3 0.0033 16.4 1.1 2.7 1 1 2 3 3 3 3 MFS_1 like family tRNA_anti-codon PF01336.25 gi|20093424|ref|NP_619499.1| - 1.3e-33 114.8 13.1 2e-08 34.1 0.1 4.4 4 0 0 4 4 4 4 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|20093424|ref|NP_619499.1| - 5.7e-23 81.8 4.0 9.3e-06 25.5 0.0 4.1 4 0 0 4 4 4 4 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|20093424|ref|NP_619499.1| - 1.9e-11 43.8 6.8 0.038 13.9 0.0 4.4 4 0 0 4 4 4 4 Replication protein A OB domain DUF3127 PF11325.8 gi|20093424|ref|NP_619499.1| - 3.9e-06 27.0 4.8 0.16 12.2 0.1 4.5 4 0 0 4 4 4 2 Domain of unknown function (DUF3127) POT1PC PF16686.5 gi|20093424|ref|NP_619499.1| - 3.7e-05 23.7 0.0 0.12 12.2 0.0 3.4 4 0 0 4 4 4 2 ssDNA-binding domain of telomere protection protein Rep_fac-A_C PF08646.10 gi|20093424|ref|NP_619499.1| - 0.00021 21.1 0.7 13 5.5 0.0 4.1 4 0 0 4 4 4 2 Replication factor-A C terminal domain Big_8 PF17961.1 gi|20093424|ref|NP_619499.1| - 0.014 15.5 0.1 1.9 8.7 0.0 3.8 3 2 1 4 4 4 0 Bacterial Ig domain RecG_wedge PF17191.4 gi|20093424|ref|NP_619499.1| - 0.015 14.9 2.4 0.14 11.7 0.1 3.0 3 0 0 3 3 3 0 RecG wedge domain T2SS-T3SS_pil_N PF13629.6 gi|20093424|ref|NP_619499.1| - 0.024 14.3 3.1 11 5.9 0.0 3.9 4 0 0 4 4 4 0 Pilus formation protein N terminal region PH_15 PF17339.2 gi|20093424|ref|NP_619499.1| - 0.066 13.1 1.9 16 5.4 0.0 3.8 3 1 1 4 4 4 0 PH domain CBS PF00571.28 gi|20093426|ref|NP_619501.1| - 2e-20 73.0 5.5 6.6e-11 42.5 0.4 2.3 2 0 0 2 2 2 2 CBS domain CBS PF00571.28 gi|20093427|ref|NP_619502.1| - 3.3e-43 145.9 10.3 6e-12 45.8 0.1 4.1 4 0 0 4 4 4 4 CBS domain DUF3892 PF13031.6 gi|20093427|ref|NP_619502.1| - 0.031 14.9 0.7 11 6.8 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3892) CBS PF00571.28 gi|20093428|ref|NP_619503.1| - 2e-47 159.5 6.5 4.9e-13 49.3 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|20093429|ref|NP_619504.1| - 1.6e-47 159.8 19.2 2.1e-14 53.7 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|20093430|ref|NP_619505.1| - 3.7e-41 139.4 10.5 5.4e-13 49.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain AIM24 PF01987.17 gi|20093431|ref|NP_619506.1| - 1.1e-67 227.7 0.2 1.3e-67 227.5 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Lig_C PF18330.1 gi|20093432|ref|NP_619507.1| - 8.5e-47 158.3 0.6 1.5e-46 157.4 0.6 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|20093432|ref|NP_619507.1| - 4.8e-19 69.2 0.0 7.8e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|20093432|ref|NP_619507.1| - 4.8e-07 29.6 0.0 3.8e-05 23.4 0.0 2.5 1 1 0 1 1 1 1 ATP dependent DNA ligase domain F420_oxidored PF03807.17 gi|20093433|ref|NP_619508.1| - 0.035 14.7 0.0 0.19 12.4 0.0 2.2 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GGACT PF06094.12 gi|20093434|ref|NP_619509.1| - 4e-14 53.3 0.2 5.5e-14 52.8 0.2 1.2 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like Methyltransf_25 PF13649.6 gi|20093435|ref|NP_619510.1| - 7.9e-22 77.8 0.0 1.7e-21 76.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|20093435|ref|NP_619510.1| - 6.2e-18 65.2 0.0 1.1e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|20093435|ref|NP_619510.1| - 8.2e-16 58.3 0.0 1.6e-15 57.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|20093435|ref|NP_619510.1| - 3e-15 56.3 0.0 4.1e-15 55.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|20093435|ref|NP_619510.1| - 3.7e-14 53.3 0.0 7.6e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|20093435|ref|NP_619510.1| - 2.2e-10 40.3 0.0 3.2e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|20093435|ref|NP_619510.1| - 2.9e-10 39.9 0.3 2.1e-09 37.1 0.3 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|20093435|ref|NP_619510.1| - 5.2e-10 39.1 0.0 9e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|20093435|ref|NP_619510.1| - 8.5e-09 35.3 0.0 4.2e-08 33.1 0.0 1.9 2 1 0 2 2 2 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|20093435|ref|NP_619510.1| - 1.1e-07 31.5 0.0 1.8e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|20093435|ref|NP_619510.1| - 2e-06 28.0 0.0 1.4e-05 25.3 0.0 2.1 1 1 0 1 1 1 1 FtsJ-like methyltransferase TPMT PF05724.11 gi|20093435|ref|NP_619510.1| - 6.8e-06 25.9 0.0 3.4e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|20093435|ref|NP_619510.1| - 2.5e-05 23.8 0.0 3.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|20093435|ref|NP_619510.1| - 0.00038 20.1 0.0 0.00076 19.1 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW AdoMet_MTase PF07757.13 gi|20093435|ref|NP_619510.1| - 0.0015 18.9 0.0 0.0038 17.5 0.0 1.7 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Methyltransf_9 PF08003.11 gi|20093435|ref|NP_619510.1| - 0.0015 17.5 0.1 0.0037 16.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) tRNA_U5-meth_tr PF05958.11 gi|20093435|ref|NP_619510.1| - 0.0027 16.8 0.0 0.004 16.2 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.6 gi|20093435|ref|NP_619510.1| - 0.0027 17.7 0.0 0.005 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|20093435|ref|NP_619510.1| - 0.0034 16.7 0.0 0.0072 15.6 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase domain Pox_MCEL PF03291.16 gi|20093435|ref|NP_619510.1| - 0.0088 15.2 0.1 0.039 13.0 0.1 1.9 1 1 0 1 1 1 1 mRNA capping enzyme Spermine_synth PF01564.17 gi|20093435|ref|NP_619510.1| - 0.043 13.2 0.1 0.59 9.5 0.0 2.0 1 1 1 2 2 2 0 Spermine/spermidine synthase domain DRE2_N PF16803.5 gi|20093435|ref|NP_619510.1| - 0.047 14.0 0.0 0.074 13.3 0.0 1.3 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus Mur_ligase PF01225.25 gi|20093435|ref|NP_619510.1| - 0.063 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain RrnaAD PF00398.20 gi|20093435|ref|NP_619510.1| - 0.063 12.3 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|20093435|ref|NP_619510.1| - 0.1 12.3 0.0 0.28 10.9 0.0 1.7 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UDPG_MGDP_dh_N PF03721.14 gi|20093435|ref|NP_619510.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_24 PF13578.6 gi|20093435|ref|NP_619510.1| - 0.13 13.3 0.0 0.27 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain AP_endonuc_2 PF01261.24 gi|20093437|ref|NP_619512.1| - 1.4e-33 116.1 0.0 1.8e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.17 gi|20093438|ref|NP_619513.1| - 1.1e-16 61.2 0.0 1.3e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 RNA binding DUF383 PF04063.14 gi|20093438|ref|NP_619513.1| - 0.23 11.1 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF383) AAA_17 PF13207.6 gi|161484931|ref|NP_619514.2| - 4.4e-15 56.3 0.1 6.3e-15 55.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|161484931|ref|NP_619514.2| - 1.9e-12 47.8 0.0 2.6e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|161484931|ref|NP_619514.2| - 2.3e-05 24.6 0.0 3.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|161484931|ref|NP_619514.2| - 0.025 14.7 0.1 0.035 14.2 0.1 1.4 1 1 0 1 1 1 0 Adenylate kinase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosarcina_acetivorans_C2A_uid57879/NC_003552.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosarcina_acetivorans_C2A_uid57879/NC_003552.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosarcina_acetivorans_C2A_uid57879/NC_003552.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosarcina_acetivorans_C2A_uid57879/NC_003552.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:25:10 2019 # [ok]