# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|336475960|ref|YP_004615101.1| - 1.2e-28 98.6 0.2 3.8e-28 97.0 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|336475960|ref|YP_004615101.1| - 1.1e-12 48.1 0.0 2.3e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336475960|ref|YP_004615101.1| - 6.1e-12 45.9 0.1 6.8e-10 39.2 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|336475960|ref|YP_004615101.1| - 1e-07 32.1 0.0 2.3e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|336475960|ref|YP_004615101.1| - 1.5e-07 31.3 0.1 2.3e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|336475960|ref|YP_004615101.1| - 0.00033 20.3 0.0 0.00062 19.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DEAD PF00270.24 gi|336475960|ref|YP_004615101.1| - 0.00054 19.5 0.5 0.88 9.0 0.0 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|336475960|ref|YP_004615101.1| - 0.0019 17.2 0.0 0.0025 16.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.9 gi|336475960|ref|YP_004615101.1| - 0.0024 16.9 1.0 0.29 10.0 0.0 2.2 1 1 1 2 2 2 2 KAP family P-loop domain DUF815 PF05673.8 gi|336475960|ref|YP_004615101.1| - 0.0033 16.4 0.2 0.0063 15.4 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) T2SE PF00437.15 gi|336475960|ref|YP_004615101.1| - 0.0035 16.2 0.0 0.0069 15.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|336475960|ref|YP_004615101.1| - 0.0036 17.2 0.2 0.2 11.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|336475960|ref|YP_004615101.1| - 0.0059 16.0 0.0 0.014 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|336475960|ref|YP_004615101.1| - 0.012 15.0 0.0 0.028 13.8 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.7 gi|336475960|ref|YP_004615101.1| - 0.019 14.0 0.0 0.83 8.6 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus FtsK_SpoIIIE PF01580.13 gi|336475960|ref|YP_004615101.1| - 0.048 13.1 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Bac_DnaA PF00308.13 gi|336475960|ref|YP_004615101.1| - 0.063 12.9 0.6 0.32 10.6 0.4 2.0 1 1 0 1 1 1 0 Bacterial dnaA protein Kinesin PF00225.18 gi|336475960|ref|YP_004615101.1| - 0.085 11.5 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain Sin3_corepress PF08295.7 gi|336475960|ref|YP_004615101.1| - 0.11 12.2 0.1 0.35 10.6 0.0 1.8 1 0 0 1 1 1 0 Sin3 family co-repressor AAA_24 PF13479.1 gi|336475960|ref|YP_004615101.1| - 0.17 11.4 1.2 0.37 10.3 0.8 1.7 1 1 0 1 1 1 0 AAA domain Peptidase_S24 PF00717.18 gi|336475961|ref|YP_004615102.1| - 3.5e-05 23.3 0.4 6.5e-05 22.5 0.3 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|336475962|ref|YP_004615103.1| - 2.6e-14 52.9 0.0 4.3e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|336475962|ref|YP_004615103.1| - 1e-12 48.1 0.0 1.9e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336475962|ref|YP_004615103.1| - 5.1e-07 29.2 0.4 1.2e-06 28.1 0.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|336475962|ref|YP_004615103.1| - 0.022 14.5 0.0 0.066 13.0 0.0 1.8 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Wyosine_form PF08608.7 gi|336475963|ref|YP_004615104.1| - 1.5e-21 76.2 0.1 3.2e-21 75.1 0.0 1.6 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|336475963|ref|YP_004615104.1| - 1.3e-17 64.4 0.0 3.3e-17 63.1 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336475963|ref|YP_004615104.1| - 0.0065 16.5 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336475963|ref|YP_004615104.1| - 0.018 15.0 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|336475963|ref|YP_004615104.1| - 0.039 14.1 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase eRF1_2 PF03464.10 gi|336475964|ref|YP_004615105.1| - 2.6e-35 121.6 0.0 4.7e-35 120.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|336475964|ref|YP_004615105.1| - 1.3e-31 109.1 0.5 7.8e-31 106.6 0.2 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|336475964|ref|YP_004615105.1| - 6.5e-26 90.4 0.2 2.2e-25 88.7 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 1 DNA_ligase_ZBD PF03119.11 gi|336475964|ref|YP_004615105.1| - 0.0027 17.3 0.5 0.0059 16.2 0.3 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain RNA_POL_M_15KD PF02150.11 gi|336475964|ref|YP_004615105.1| - 0.004 16.7 0.7 2.1 8.1 0.0 2.5 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit Rad50_zn_hook PF04423.9 gi|336475964|ref|YP_004615105.1| - 0.069 12.6 1.2 1.4 8.4 0.0 2.8 2 0 0 2 2 2 0 Rad50 zinc hook motif PhnA_Zn_Ribbon PF08274.7 gi|336475964|ref|YP_004615105.1| - 0.13 12.0 2.0 7.7 6.4 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|336475964|ref|YP_004615105.1| - 0.2 11.4 0.9 0.64 9.8 0.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|336475964|ref|YP_004615105.1| - 0.36 10.3 1.8 12 5.4 0.1 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-CSL PF05207.8 gi|336475964|ref|YP_004615105.1| - 0.43 10.1 2.9 11 5.6 2.0 2.5 1 1 0 1 1 1 0 CSL zinc finger zinc_ribbon_2 PF13240.1 gi|336475964|ref|YP_004615105.1| - 0.62 9.6 3.4 4.7 6.8 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|336475964|ref|YP_004615105.1| - 0.87 9.1 3.0 0.45 10.0 0.2 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|336475964|ref|YP_004615105.1| - 6.9 6.0 6.9 3.4 7.0 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_1d PF00750.14 gi|336475965|ref|YP_004615106.1| - 3.9e-57 193.6 0.6 6.5e-57 192.9 0.4 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|336475965|ref|YP_004615106.1| - 2.6e-32 111.2 0.0 5.7e-32 110.1 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|336475965|ref|YP_004615106.1| - 4.1e-13 49.6 0.1 1.1e-12 48.3 0.1 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|336475965|ref|YP_004615106.1| - 6.7e-09 34.8 0.1 9.3e-05 21.2 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|336475965|ref|YP_004615106.1| - 4e-06 25.7 0.4 0.019 13.6 0.1 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|336475965|ref|YP_004615106.1| - 0.00065 18.9 0.2 0.0015 17.6 0.2 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|336475965|ref|YP_004615106.1| - 0.02 12.9 0.1 0.03 12.3 0.1 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) HSP20 PF00011.16 gi|336475966|ref|YP_004615107.1| - 0.0019 18.0 0.0 0.0047 16.7 0.0 1.7 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|336475966|ref|YP_004615107.1| - 0.047 14.2 0.0 0.075 13.5 0.0 1.3 1 0 0 1 1 1 0 CS domain DUF4147 PF13660.1 gi|336475967|ref|YP_004615108.1| - 2.1e-87 292.1 0.1 2.8e-87 291.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|336475967|ref|YP_004615108.1| - 5.9e-37 126.0 2.2 1.2e-36 125.1 1.5 1.5 1 0 0 1 1 1 1 MOFRL family Glycos_transf_2 PF00535.21 gi|336475968|ref|YP_004615109.1| - 2.5e-08 33.7 0.0 5.2e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|336475968|ref|YP_004615109.1| - 0.15 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain cobW PF02492.14 gi|336475969|ref|YP_004615110.1| - 7.9e-38 129.6 0.1 1.1e-37 129.1 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|336475969|ref|YP_004615110.1| - 0.012 15.3 0.1 0.034 13.8 0.1 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF348 PF03990.9 gi|336475969|ref|YP_004615110.1| - 0.012 15.1 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF348) SRP54 PF00448.17 gi|336475969|ref|YP_004615110.1| - 0.03 13.7 0.1 0.057 12.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.13 gi|336475969|ref|YP_004615110.1| - 0.076 12.5 0.3 0.14 11.6 0.1 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|336475969|ref|YP_004615110.1| - 0.16 11.3 1.1 0.51 9.7 0.1 1.9 2 0 0 2 2 2 0 AAA-like domain CbiA PF01656.18 gi|336475969|ref|YP_004615110.1| - 0.36 10.1 3.5 0.2 11.0 0.3 2.1 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.4 gi|336475969|ref|YP_004615110.1| - 0.48 8.9 2.6 1 7.9 0.2 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain URO-D PF01208.12 gi|336475970|ref|YP_004615111.1| - 4.2e-80 269.2 0.0 4.7e-80 269.1 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF3551 PF12071.3 gi|336475970|ref|YP_004615111.1| - 0.13 11.8 0.3 0.45 10.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3551) DUF95 PF01944.12 gi|336475972|ref|YP_004615113.1| - 2.2e-18 66.4 22.6 4.1e-16 59.1 6.8 2.6 2 1 0 2 2 2 2 Integral membrane protein DUF95 KaiC PF06745.8 gi|336475973|ref|YP_004615114.1| - 8.5e-51 172.2 0.0 1.2e-50 171.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336475973|ref|YP_004615114.1| - 9.2e-09 34.9 0.0 1e-07 31.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|336475973|ref|YP_004615114.1| - 1.2e-05 24.3 0.0 0.00011 21.2 0.0 2.0 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|336475973|ref|YP_004615114.1| - 0.00017 21.7 0.0 0.00029 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336475973|ref|YP_004615114.1| - 0.0011 18.8 0.0 0.0025 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|336475973|ref|YP_004615114.1| - 0.0013 18.5 0.0 0.0022 17.7 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase GvpD PF07088.6 gi|336475973|ref|YP_004615114.1| - 0.0042 15.4 0.1 0.017 13.4 0.0 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|336475973|ref|YP_004615114.1| - 0.0079 15.9 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|336475973|ref|YP_004615114.1| - 0.0087 16.2 0.2 0.047 13.9 0.0 2.1 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|336475973|ref|YP_004615114.1| - 0.009 16.8 0.1 0.047 14.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|336475973|ref|YP_004615114.1| - 0.015 15.2 0.1 0.051 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|336475973|ref|YP_004615114.1| - 0.027 13.1 0.0 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_11 PF13086.1 gi|336475973|ref|YP_004615114.1| - 0.034 13.7 0.0 0.046 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336475973|ref|YP_004615114.1| - 0.035 13.7 0.0 0.14 11.8 0.0 1.9 2 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|336475973|ref|YP_004615114.1| - 0.043 13.9 0.0 0.54 10.4 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_16 PF13191.1 gi|336475973|ref|YP_004615114.1| - 0.066 13.1 0.0 0.085 12.8 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|336475973|ref|YP_004615114.1| - 0.11 11.8 0.0 0.28 10.6 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|336475973|ref|YP_004615114.1| - 0.14 11.7 0.4 1.3 8.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain Rad51 PF08423.6 gi|336475973|ref|YP_004615114.1| - 0.14 10.9 0.7 0.77 8.6 0.0 2.2 3 0 0 3 3 3 0 Rad51 RecA PF00154.16 gi|336475973|ref|YP_004615114.1| - 0.16 11.0 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_18 PF13238.1 gi|336475973|ref|YP_004615114.1| - 0.18 12.1 0.7 0.65 10.3 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|336475973|ref|YP_004615114.1| - 0.2 11.6 0.5 1.9 8.4 0.3 2.3 1 1 0 1 1 1 0 AAA domain Tox-GHH PF15636.1 gi|336475974|ref|YP_004615115.1| - 0.2 11.3 1.0 9.9 5.8 0.1 2.8 3 0 0 3 3 3 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin GTP_EFTU_D2 PF03144.20 gi|336475975|ref|YP_004615116.1| - 1.9e-09 37.5 1.2 4.5e-09 36.3 0.1 2.2 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.22 gi|336475975|ref|YP_004615116.1| - 6.4e-08 32.2 0.1 1.3e-05 24.7 0.0 2.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|336475975|ref|YP_004615116.1| - 0.00011 22.9 0.7 0.0004 21.1 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336475975|ref|YP_004615116.1| - 0.00016 21.9 0.2 0.0005 20.3 0.1 1.9 1 0 0 1 1 1 1 AAA domain GTP_EFTU_D4 PF14578.1 gi|336475975|ref|YP_004615116.1| - 0.00033 20.2 0.8 0.018 14.6 0.6 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 PduV-EutP PF10662.4 gi|336475975|ref|YP_004615116.1| - 0.0036 16.7 1.1 0.041 13.3 0.8 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|336475975|ref|YP_004615116.1| - 0.01 16.3 0.1 0.039 14.4 0.1 2.0 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|336475975|ref|YP_004615116.1| - 0.017 15.0 0.3 0.035 14.0 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336475975|ref|YP_004615116.1| - 0.022 14.8 0.2 0.071 13.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|336475975|ref|YP_004615116.1| - 0.024 14.1 0.8 0.047 13.2 0.6 1.5 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|336475975|ref|YP_004615116.1| - 0.039 13.1 0.3 1.9 7.7 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family NACHT PF05729.7 gi|336475975|ref|YP_004615116.1| - 0.07 12.7 0.1 0.16 11.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|336475975|ref|YP_004615116.1| - 0.11 12.2 0.6 0.29 10.8 0.4 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DNA_ligase_A_M PF01068.16 gi|336475976|ref|YP_004615117.1| - 4.2e-23 81.7 0.1 1.1e-22 80.3 0.1 1.7 1 1 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|336475976|ref|YP_004615117.1| - 9.3e-07 28.8 0.1 4.2e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 RNA ligase HTH_17 PF12728.2 gi|336475976|ref|YP_004615117.1| - 0.074 13.3 0.2 0.26 11.5 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain CBS PF00571.23 gi|336475977|ref|YP_004615118.1| - 1.6e-43 146.2 12.7 1.1e-13 50.7 0.3 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|336475978|ref|YP_004615119.1| - 4.6e-52 173.5 19.4 2e-15 56.2 0.6 4.3 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|336475979|ref|YP_004615120.1| - 5.7e-62 205.2 7.8 1.5e-15 56.7 0.0 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|336475980|ref|YP_004615121.1| - 4e-53 176.9 7.6 1.8e-14 53.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|336475981|ref|YP_004615122.1| - 4.9e-26 90.2 2.4 5.8e-14 51.5 0.0 2.2 2 0 0 2 2 2 2 CBS domain CCAP PF11105.3 gi|336475981|ref|YP_004615122.1| - 0.4 10.4 2.0 10 5.8 0.2 2.6 2 1 1 3 3 3 0 Arthropod cardioacceleratory peptide 2a tRNA_anti-codon PF01336.20 gi|336475982|ref|YP_004615123.1| - 1.9e-29 101.3 9.9 5.9e-11 42.0 0.2 3.4 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|336475982|ref|YP_004615123.1| - 2e-05 24.3 0.1 3.8 7.1 0.0 3.4 3 0 0 3 3 3 3 Replication factor-A C terminal domain BOF PF04076.8 gi|336475982|ref|YP_004615123.1| - 0.03 14.1 4.2 1.1 9.0 0.3 3.8 2 2 0 2 2 2 0 Bacterial OB fold (BOF) protein DUF2240 PF09999.4 gi|336475982|ref|YP_004615123.1| - 0.06 12.7 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) T2SS-T3SS_pil_N PF13629.1 gi|336475982|ref|YP_004615123.1| - 0.062 12.8 0.8 3.8 7.1 0.2 3.2 3 0 0 3 3 3 0 Pilus formation protein N terminal region S4_2 PF13275.1 gi|336475982|ref|YP_004615123.1| - 0.066 12.8 0.2 2.8 7.6 0.0 2.6 2 0 0 2 2 2 0 S4 domain PTS_2-RNA PF01885.11 gi|336475983|ref|YP_004615124.1| - 4.9e-42 143.3 0.0 6.1e-42 143.0 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PB1 PF00564.19 gi|336475983|ref|YP_004615124.1| - 0.15 11.7 0.4 0.44 10.2 0.1 1.9 1 1 0 2 2 2 0 PB1 domain RTC PF01137.16 gi|336475984|ref|YP_004615125.1| - 4e-83 277.6 0.0 7.6e-83 276.7 0.0 1.4 1 1 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|336475984|ref|YP_004615125.1| - 3.8e-19 68.6 0.0 6.4e-19 67.8 0.0 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Toprim_4 PF13662.1 gi|336475985|ref|YP_004615126.1| - 2.5e-09 37.0 0.1 6e-09 35.7 0.1 1.7 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|336475985|ref|YP_004615126.1| - 0.00089 19.1 0.1 0.0049 16.8 0.0 2.2 1 1 0 1 1 1 1 Toprim domain UPF0058 PF01893.11 gi|336475986|ref|YP_004615127.1| - 1e-33 115.2 3.3 1.2e-33 115.0 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF148 PF02520.12 gi|336475986|ref|YP_004615127.1| - 0.0021 17.8 0.7 0.0048 16.6 0.5 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF148 Cas_Cmr5 PF09701.5 gi|336475986|ref|YP_004615127.1| - 0.13 12.4 0.2 0.25 11.5 0.1 1.4 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr5) Acetyltransf_1 PF00583.19 gi|336475987|ref|YP_004615128.1| - 1.8e-17 63.1 0.1 2.4e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336475987|ref|YP_004615128.1| - 2.5e-11 43.5 0.1 3.3e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336475987|ref|YP_004615128.1| - 4.5e-10 39.6 0.0 5.1e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336475987|ref|YP_004615128.1| - 1.2e-09 38.2 0.0 1.6e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336475987|ref|YP_004615128.1| - 2e-08 33.8 0.0 2.7e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|336475987|ref|YP_004615128.1| - 5e-08 33.2 0.0 3.2e-07 30.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336475987|ref|YP_004615128.1| - 0.00019 21.4 0.0 0.00042 20.2 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336475987|ref|YP_004615128.1| - 0.00032 20.5 0.0 0.00094 19.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|336475987|ref|YP_004615128.1| - 0.0064 15.8 0.0 0.01 15.1 0.0 1.3 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Acetyltransf_CG PF14542.1 gi|336475987|ref|YP_004615128.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase TGT PF01702.13 gi|336475988|ref|YP_004615129.1| - 4e-17 62.3 0.1 6.1e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|336475988|ref|YP_004615129.1| - 2.5e-16 59.2 0.0 6.1e-16 58.0 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|336475988|ref|YP_004615129.1| - 6e-11 41.9 0.0 1.4e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 PUA domain FAD-oxidase_C PF02913.14 gi|336475989|ref|YP_004615130.1| - 4.9e-57 193.0 0.0 6.6e-57 192.6 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|336475989|ref|YP_004615130.1| - 9.5e-46 154.7 1.2 1.5e-45 154.0 0.3 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_5 PF07994.7 gi|336475989|ref|YP_004615130.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase CCG PF02754.11 gi|336475990|ref|YP_004615131.1| - 6.5e-32 109.3 7.7 8.2e-17 60.9 0.0 2.7 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|336475990|ref|YP_004615131.1| - 5.3e-12 45.5 5.8 5.3e-12 45.5 4.0 3.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336475990|ref|YP_004615131.1| - 4.4e-11 42.9 5.6 4.4e-11 42.9 3.9 3.2 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336475990|ref|YP_004615131.1| - 1.2e-07 31.9 5.9 1.2e-07 31.9 4.1 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336475990|ref|YP_004615131.1| - 4.5e-06 26.9 8.8 0.0079 16.5 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336475990|ref|YP_004615131.1| - 2.4e-05 24.0 11.2 2.4e-05 24.0 7.7 2.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336475990|ref|YP_004615131.1| - 4.6e-05 22.8 14.2 0.00077 18.9 1.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336475990|ref|YP_004615131.1| - 0.0003 20.9 12.7 0.0003 20.9 8.8 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336475990|ref|YP_004615131.1| - 0.00056 20.5 12.5 0.0041 17.8 0.4 3.1 4 0 0 4 4 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|336475990|ref|YP_004615131.1| - 0.0035 17.1 15.5 0.1 12.4 0.8 4.2 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336475990|ref|YP_004615131.1| - 0.0035 17.1 26.7 0.01 15.6 3.5 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336475990|ref|YP_004615131.1| - 0.0092 16.2 2.2 0.0092 16.2 1.5 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336475990|ref|YP_004615131.1| - 0.14 12.7 8.1 2.5 8.7 0.1 3.7 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|336475990|ref|YP_004615131.1| - 1.2 9.0 24.1 0.28 11.1 2.4 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|336475990|ref|YP_004615131.1| - 1.7 8.2 7.8 0.72 9.4 0.6 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Radical_SAM_N PF08497.5 gi|336475991|ref|YP_004615132.1| - 8.9e-131 435.3 0.0 1.3e-130 434.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM N-terminal Radical_SAM PF04055.16 gi|336475991|ref|YP_004615132.1| - 2e-17 63.8 0.1 1.7e-15 57.6 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily DUF3362 PF11842.3 gi|336475991|ref|YP_004615132.1| - 1.9e-16 60.3 0.1 3.3e-16 59.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) B12-binding PF02310.14 gi|336475991|ref|YP_004615132.1| - 4.1e-05 23.4 0.0 0.032 14.1 0.0 3.0 3 0 0 3 3 3 2 B12 binding domain Catalase-rel PF06628.7 gi|336475991|ref|YP_004615132.1| - 0.15 11.9 0.0 12 5.8 0.0 2.7 2 0 0 2 2 2 0 Catalase-related immune-responsive Lactamase_B PF00753.22 gi|336475992|ref|YP_004615133.1| - 2.2e-32 112.2 0.0 2.7e-32 111.9 0.0 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336475992|ref|YP_004615133.1| - 3.2e-06 26.8 0.0 5.2e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336475992|ref|YP_004615133.1| - 0.0053 16.4 0.1 0.0059 16.3 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TatD_DNase PF01026.16 gi|336475993|ref|YP_004615134.1| - 6.4e-61 205.7 0.3 7.2e-61 205.6 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase DRTGG PF07085.7 gi|336475993|ref|YP_004615134.1| - 0.02 14.4 0.0 0.54 9.8 0.0 2.6 2 1 0 2 2 2 0 DRTGG domain HMGL-like PF00682.14 gi|336475994|ref|YP_004615135.1| - 3.4e-69 233.1 0.8 3.4e-69 233.1 0.6 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|336475994|ref|YP_004615135.1| - 2.1e-31 108.4 2.9 3.6e-31 107.7 2.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DDE_Tnp_1 PF01609.16 gi|336475995|ref|YP_004615136.1| - 1.2e-06 28.2 2.3 3.9e-06 26.5 1.5 1.9 1 1 0 1 1 1 1 Transposase DDE domain Rhomboid PF01694.17 gi|336475996|ref|YP_004615137.1| - 4.5e-08 33.2 30.3 2.7e-06 27.4 10.9 2.9 2 1 0 3 3 3 2 Rhomboid family NAC PF01849.13 gi|336475997|ref|YP_004615138.1| - 3.1e-18 65.0 2.7 5.1e-18 64.3 1.9 1.4 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|336475997|ref|YP_004615138.1| - 3.8e-08 32.9 3.5 1.4e-07 31.0 0.1 2.9 3 0 0 3 3 3 1 UBA/TS-N domain UBA_4 PF14555.1 gi|336475997|ref|YP_004615138.1| - 0.00011 21.6 0.1 0.00017 21.0 0.1 1.3 1 0 0 1 1 1 1 UBA-like domain DUF3867 PF12983.2 gi|336475997|ref|YP_004615138.1| - 0.0092 15.9 0.3 0.011 15.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3867) Fucose_iso_N2 PF07882.7 gi|336475997|ref|YP_004615138.1| - 0.093 12.3 2.5 0.17 11.5 1.4 1.7 1 1 1 2 2 2 0 L-fucose isomerase, second N-terminal domain Sigma70_r3 PF04539.11 gi|336475997|ref|YP_004615138.1| - 0.28 11.0 2.8 3 7.8 0.1 2.8 2 2 2 4 4 4 0 Sigma-70 region 3 PTS_IIB PF02302.12 gi|336475997|ref|YP_004615138.1| - 0.4 11.1 2.9 0.82 10.1 1.8 1.7 1 1 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit Fe-S_biosyn PF01521.15 gi|336475998|ref|YP_004615139.1| - 4e-13 49.3 0.1 4.8e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis OB_RNB PF08206.6 gi|336475998|ref|YP_004615139.1| - 0.073 12.5 0.3 0.18 11.3 0.2 1.6 1 0 0 1 1 1 0 Ribonuclease B OB domain Mrr_cat PF04471.7 gi|336475999|ref|YP_004615140.1| - 0.00063 19.5 0.0 0.002 17.9 0.0 1.8 1 1 0 1 1 1 1 Restriction endonuclease PepSY PF03413.14 gi|336475999|ref|YP_004615140.1| - 0.013 16.1 0.0 0.65 10.6 0.0 3.0 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain TerD PF02342.13 gi|336475999|ref|YP_004615140.1| - 0.12 11.6 0.1 0.23 10.7 0.1 1.3 1 0 0 1 1 1 0 TerD domain CENP-H PF05837.7 gi|336475999|ref|YP_004615140.1| - 0.42 10.8 3.9 0.35 11.0 1.7 1.6 2 0 0 2 2 2 0 Centromere protein H (CENP-H) KaiC PF06745.8 gi|336476000|ref|YP_004615141.1| - 1.9e-35 122.0 0.3 2.5e-35 121.6 0.2 1.1 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|336476000|ref|YP_004615141.1| - 1.4e-08 33.5 0.0 1.8e-08 33.1 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|336476000|ref|YP_004615141.1| - 0.00013 21.4 0.0 0.00025 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|336476000|ref|YP_004615141.1| - 0.00053 18.9 6.0 0.0097 14.7 0.1 2.1 1 1 0 2 2 2 2 PAXNEB protein Rad51 PF08423.6 gi|336476000|ref|YP_004615141.1| - 0.0091 14.9 0.0 0.016 14.1 0.0 1.6 1 1 0 1 1 1 1 Rad51 ATP-synt_ab PF00006.20 gi|336476000|ref|YP_004615141.1| - 0.012 15.0 0.1 0.024 14.1 0.0 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RecA PF00154.16 gi|336476000|ref|YP_004615141.1| - 0.068 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein PRA-CH PF01502.13 gi|336476001|ref|YP_004615142.1| - 4.7e-37 125.4 1.0 7.3e-37 124.8 0.7 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SE PF00437.15 gi|336476002|ref|YP_004615143.1| - 1e-13 50.7 0.0 2.6e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|336476002|ref|YP_004615143.1| - 1.7e-08 33.9 0.5 8.5e-08 31.7 0.4 2.3 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|336476002|ref|YP_004615143.1| - 2e-05 24.1 0.8 0.00063 19.3 0.4 3.0 2 0 0 2 2 2 1 KH domain AAA_17 PF13207.1 gi|336476002|ref|YP_004615143.1| - 2.3e-05 25.2 0.0 8.3e-05 23.4 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336476002|ref|YP_004615143.1| - 0.00013 21.6 0.0 0.00057 19.5 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain TIP49 PF06068.8 gi|336476002|ref|YP_004615143.1| - 0.00042 19.1 0.0 0.0012 17.6 0.0 1.7 1 0 0 1 1 1 1 TIP49 C-terminus AAA_22 PF13401.1 gi|336476002|ref|YP_004615143.1| - 0.00053 20.1 0.0 0.07 13.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|336476002|ref|YP_004615143.1| - 0.0013 18.1 0.0 0.0042 16.5 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|336476002|ref|YP_004615143.1| - 0.0019 18.0 0.0 0.0047 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336476002|ref|YP_004615143.1| - 0.0021 18.1 0.0 0.0041 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|336476002|ref|YP_004615143.1| - 0.004 17.4 0.1 0.015 15.5 0.0 2.1 3 0 0 3 3 1 1 AAA domain AAA_11 PF13086.1 gi|336476002|ref|YP_004615143.1| - 0.0057 16.2 0.0 0.025 14.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain PIN_4 PF13638.1 gi|336476002|ref|YP_004615143.1| - 0.007 16.4 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 PIN domain AAA PF00004.24 gi|336476002|ref|YP_004615143.1| - 0.007 16.5 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KH_2 PF07650.12 gi|336476002|ref|YP_004615143.1| - 0.0072 15.8 1.1 0.0072 15.8 0.7 2.3 2 0 0 2 2 2 1 KH domain NACHT PF05729.7 gi|336476002|ref|YP_004615143.1| - 0.011 15.4 0.1 0.029 14.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain KaiC PF06745.8 gi|336476002|ref|YP_004615143.1| - 0.012 14.7 0.0 0.041 13.0 0.0 1.9 1 0 0 1 1 1 0 KaiC AAA_14 PF13173.1 gi|336476002|ref|YP_004615143.1| - 0.015 15.1 0.0 0.044 13.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|336476002|ref|YP_004615143.1| - 0.028 14.1 0.0 0.088 12.5 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_25 PF13481.1 gi|336476002|ref|YP_004615143.1| - 0.03 13.7 0.0 0.072 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336476002|ref|YP_004615143.1| - 0.032 13.6 0.0 0.058 12.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|336476002|ref|YP_004615143.1| - 0.033 14.5 0.0 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|336476002|ref|YP_004615143.1| - 0.038 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.5 gi|336476002|ref|YP_004615143.1| - 0.04 13.1 0.0 0.078 12.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|336476002|ref|YP_004615143.1| - 0.041 12.9 0.0 0.077 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|336476002|ref|YP_004615143.1| - 0.047 13.1 0.0 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|336476002|ref|YP_004615143.1| - 0.062 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|336476002|ref|YP_004615143.1| - 0.066 12.8 0.0 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activ_2 PF14532.1 gi|336476002|ref|YP_004615143.1| - 0.18 11.8 0.0 0.39 10.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain UDPG_MGDP_dh_N PF03721.9 gi|336476003|ref|YP_004615144.1| - 1.4e-64 216.8 0.2 2.5e-64 216.0 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|336476003|ref|YP_004615144.1| - 6.1e-35 119.3 0.0 1.2e-34 118.3 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|336476003|ref|YP_004615144.1| - 4.8e-28 97.3 0.0 1.9e-27 95.5 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|336476003|ref|YP_004615144.1| - 1.1e-07 31.7 0.0 3.5e-07 30.0 0.0 2.0 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|336476003|ref|YP_004615144.1| - 1.1e-06 28.3 0.0 3.6e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336476003|ref|YP_004615144.1| - 2.6e-05 24.5 0.0 0.0089 16.4 0.0 3.2 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336476003|ref|YP_004615144.1| - 0.00023 21.0 0.0 0.023 14.5 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|336476003|ref|YP_004615144.1| - 0.00031 20.1 0.0 0.00054 19.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|336476003|ref|YP_004615144.1| - 0.00039 20.0 0.0 0.00078 19.0 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|336476003|ref|YP_004615144.1| - 0.0016 18.7 0.2 0.0057 17.0 0.1 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|336476003|ref|YP_004615144.1| - 0.0045 16.9 0.2 0.013 15.5 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|336476003|ref|YP_004615144.1| - 0.0085 15.2 0.1 0.059 12.5 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336476003|ref|YP_004615144.1| - 0.021 15.3 0.0 0.1 13.0 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DAO PF01266.19 gi|336476003|ref|YP_004615144.1| - 0.18 10.7 0.3 0.48 9.2 0.2 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336476003|ref|YP_004615144.1| - 0.34 10.9 1.3 0.74 9.8 0.1 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Prefoldin_3 PF13758.1 gi|336476004|ref|YP_004615145.1| - 0.02 14.6 0.9 0.58 9.9 0.0 2.8 3 0 0 3 3 3 0 Prefoldin subunit NPV_P10 PF05531.7 gi|336476004|ref|YP_004615145.1| - 0.026 14.7 0.3 0.22 11.8 0.2 2.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2408 PF10303.4 gi|336476004|ref|YP_004615145.1| - 0.041 13.9 1.3 0.34 11.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) ATP1G1_PLM_MAT8 PF02038.11 gi|336476004|ref|YP_004615145.1| - 0.048 12.6 0.1 0.095 11.7 0.1 1.4 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF1192 PF06698.6 gi|336476004|ref|YP_004615145.1| - 0.064 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) FH2 PF02181.18 gi|336476004|ref|YP_004615145.1| - 0.068 12.0 0.8 6.7 5.4 0.1 2.0 1 1 1 2 2 2 0 Formin Homology 2 Domain GerA PF03323.8 gi|336476004|ref|YP_004615145.1| - 0.069 11.2 0.0 0.11 10.5 0.0 1.3 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Spc7 PF08317.6 gi|336476004|ref|YP_004615145.1| - 0.071 11.7 0.2 0.13 10.9 0.0 1.4 2 0 0 2 2 2 0 Spc7 kinetochore protein TSC22 PF01166.13 gi|336476004|ref|YP_004615145.1| - 0.097 12.6 0.7 16 5.5 0.0 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family Toxin_44 PF15523.1 gi|336476004|ref|YP_004615145.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 1 0 1 1 1 0 Putative toxin 44 Halo_GVPC PF05465.8 gi|336476004|ref|YP_004615145.1| - 3 7.8 4.6 0.68 9.9 0.1 2.0 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat CarboxypepD_reg PF13620.1 gi|336476006|ref|YP_004615147.1| - 2e-05 24.5 0.8 0.00019 21.3 0.6 2.2 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|336476006|ref|YP_004615147.1| - 0.002 18.0 0.4 0.0031 17.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|336476006|ref|YP_004615147.1| - 0.039 13.5 0.1 0.09 12.4 0.1 1.6 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) GATase PF00117.23 gi|336476007|ref|YP_004615148.1| - 1.4e-33 115.9 0.0 1.5e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|336476007|ref|YP_004615148.1| - 1.2e-07 31.5 0.0 2.5e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|336476007|ref|YP_004615148.1| - 4.1e-06 26.4 1.6 2e-05 24.2 1.1 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|336476007|ref|YP_004615148.1| - 3.8e-05 23.2 0.6 0.00016 21.1 0.4 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|336476007|ref|YP_004615148.1| - 0.059 12.8 0.0 0.07 12.5 0.0 1.4 1 1 0 1 1 1 0 DJ-1/PfpI family GATase_5 PF13507.1 gi|336476007|ref|YP_004615148.1| - 0.073 11.9 0.0 3.9 6.3 0.0 2.2 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain AIRS_C PF02769.17 gi|336476008|ref|YP_004615149.1| - 1.9e-21 76.6 0.5 3.4e-21 75.8 0.3 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336476008|ref|YP_004615149.1| - 1.1e-13 51.2 0.8 3.6e-13 49.5 0.1 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain NfeD PF01957.13 gi|336476009|ref|YP_004615150.1| - 7.6e-35 120.1 2.2 7.6e-35 120.1 1.5 2.4 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|336476009|ref|YP_004615150.1| - 0.00035 20.2 0.1 0.00098 18.8 0.1 1.7 1 1 0 1 1 1 1 Clp protease TMEM154 PF15102.1 gi|336476009|ref|YP_004615150.1| - 0.49 10.1 4.1 0.17 11.5 0.4 2.0 2 0 0 2 2 2 0 TMEM154 protein family DUF2619 PF10942.3 gi|336476009|ref|YP_004615150.1| - 1 9.3 10.8 3.3 7.7 0.8 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2619) Band_7 PF01145.20 gi|336476010|ref|YP_004615151.1| - 5.3e-36 124.1 3.1 7.4e-36 123.7 2.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|336476010|ref|YP_004615151.1| - 0.00011 21.8 0.0 0.00021 20.8 0.0 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family DHH PF01368.15 gi|336476011|ref|YP_004615152.1| - 6.7e-11 42.0 0.2 1.2e-10 41.1 0.1 1.4 1 0 0 1 1 1 1 DHH family DnaJ_CXXCXGXG PF00684.14 gi|336476011|ref|YP_004615152.1| - 1.8e-08 34.3 14.1 1.8e-08 34.3 9.8 2.6 2 1 0 2 2 2 1 DnaJ central domain S1 PF00575.18 gi|336476011|ref|YP_004615152.1| - 5.4e-08 32.8 1.6 1.3e-07 31.6 0.1 2.4 2 1 0 2 2 2 1 S1 RNA binding domain tRNA_anti-codon PF01336.20 gi|336476011|ref|YP_004615152.1| - 2.9e-07 30.2 0.1 6.4e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1_2 PF13509.1 gi|336476011|ref|YP_004615152.1| - 0.024 14.5 0.0 0.054 13.4 0.0 1.6 1 0 0 1 1 1 0 S1 domain Rep_fac-A_3 PF08661.6 gi|336476011|ref|YP_004615152.1| - 0.049 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Replication factor A protein 3 Pribosyltran PF00156.22 gi|336476012|ref|YP_004615153.1| - 2.3e-21 75.8 0.2 4e-21 75.0 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_11 PF08279.7 gi|336476012|ref|YP_004615153.1| - 0.00045 19.7 0.4 0.23 11.1 0.0 2.6 2 0 0 2 2 2 2 HTH domain HTH_7 PF02796.10 gi|336476012|ref|YP_004615153.1| - 0.00074 19.3 1.1 0.0036 17.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase UPRTase PF14681.1 gi|336476012|ref|YP_004615153.1| - 0.00097 18.3 0.0 0.0018 17.5 0.0 1.4 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|336476012|ref|YP_004615153.1| - 0.02 14.5 0.0 0.099 12.3 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|336476012|ref|YP_004615153.1| - 0.042 13.6 0.2 6 6.7 0.0 3.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain PRTase_2 PF15609.1 gi|336476012|ref|YP_004615153.1| - 0.066 12.5 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Sigma70_r4 PF04545.11 gi|336476012|ref|YP_004615153.1| - 0.11 11.8 0.5 0.26 10.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4411 PF14367.1 gi|336476013|ref|YP_004615154.1| - 0.028 14.1 0.1 0.039 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) DNA_ligase_ZBD PF03119.11 gi|336476013|ref|YP_004615154.1| - 0.032 13.9 0.1 0.068 12.8 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Erp_C PF06780.6 gi|336476013|ref|YP_004615154.1| - 0.044 13.6 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Erp protein C-terminus Prok-RING_1 PF14446.1 gi|336476013|ref|YP_004615154.1| - 0.045 13.4 1.8 0.077 12.7 1.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|336476013|ref|YP_004615154.1| - 0.098 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons PIN PF01850.16 gi|336476013|ref|YP_004615154.1| - 0.11 12.8 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 PIN domain Ribosomal_L29 PF00831.18 gi|336476013|ref|YP_004615154.1| - 0.11 12.1 0.1 0.35 10.5 0.0 1.9 2 0 0 2 2 2 0 Ribosomal L29 protein Rad50_zn_hook PF04423.9 gi|336476013|ref|YP_004615154.1| - 0.17 11.4 2.6 0.21 11.0 0.1 2.4 2 1 1 3 3 3 0 Rad50 zinc hook motif zf-IS66 PF13005.2 gi|336476013|ref|YP_004615154.1| - 0.41 10.6 0.1 0.41 10.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2072 PF09845.4 gi|336476013|ref|YP_004615154.1| - 2.3 8.1 6.9 1.1 9.1 2.5 2.0 2 1 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) CD20 PF04103.10 gi|336476014|ref|YP_004615155.1| - 0.19 11.6 2.9 0.23 11.4 2.0 1.1 1 0 0 1 1 1 0 CD20-like family DUF4014 PF13198.1 gi|336476015|ref|YP_004615156.1| - 0.0038 17.5 3.5 0.0038 17.5 2.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF4014) Claudin_3 PF06653.6 gi|336476015|ref|YP_004615156.1| - 0.038 13.7 6.3 0.048 13.3 4.4 1.2 1 0 0 1 1 1 0 Tight junction protein, Claudin-like CcmH PF03918.9 gi|336476015|ref|YP_004615156.1| - 0.75 8.7 7.0 2.2 7.2 1.4 2.1 1 1 1 2 2 2 0 Cytochrome C biogenesis protein DUF161 PF02588.10 gi|336476015|ref|YP_004615156.1| - 2.7 8.3 11.1 17 5.8 7.8 2.2 1 1 1 2 2 2 0 Uncharacterized BCR, YitT family COG1284 SdpI PF13630.1 gi|336476015|ref|YP_004615156.1| - 7.4 6.3 11.5 51 3.6 8.1 2.0 1 1 1 2 2 2 0 SdpI/YhfL protein family NAD_synthase PF02540.12 gi|336476016|ref|YP_004615157.1| - 1.9e-80 269.2 0.0 2.2e-80 269.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|336476016|ref|YP_004615157.1| - 1e-05 24.3 0.0 0.00014 20.5 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|336476016|ref|YP_004615157.1| - 0.0046 16.4 0.0 0.0064 16.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|336476016|ref|YP_004615157.1| - 0.0048 16.1 0.0 0.0074 15.5 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC HTH_23 PF13384.1 gi|336476016|ref|YP_004615157.1| - 0.014 15.0 0.1 0.17 11.6 0.0 2.7 3 0 0 3 3 3 0 Homeodomain-like domain DUF1743 PF08489.6 gi|336476017|ref|YP_004615158.1| - 8.5e-38 128.7 0.0 2.6e-37 127.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) zinc-ribbons_6 PF07191.7 gi|336476017|ref|YP_004615158.1| - 0.0087 15.8 2.1 0.0087 15.8 1.5 2.0 2 0 0 2 2 2 1 zinc-ribbons Rep_fac-A_C PF08646.5 gi|336476017|ref|YP_004615158.1| - 0.011 15.4 2.6 0.023 14.4 1.8 1.5 1 0 0 1 1 1 0 Replication factor-A C terminal domain Phage_integrase PF00589.17 gi|336476017|ref|YP_004615158.1| - 0.099 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Phage integrase family C1_1 PF00130.17 gi|336476017|ref|YP_004615158.1| - 0.27 10.9 2.4 0.56 9.9 1.6 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.6 gi|336476017|ref|YP_004615158.1| - 0.3 10.7 2.2 0.75 9.4 1.5 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|336476017|ref|YP_004615158.1| - 0.61 9.9 5.2 1.5 8.6 3.6 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_3 PF01381.17 gi|336476018|ref|YP_004615159.1| - 1.2e-10 41.1 0.9 2.7e-10 39.9 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|336476018|ref|YP_004615159.1| - 4e-08 33.3 0.2 7.4e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|336476018|ref|YP_004615159.1| - 7.3e-07 29.1 0.1 2e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336476018|ref|YP_004615159.1| - 0.00043 19.8 0.1 0.0023 17.5 0.1 2.2 2 0 0 2 2 2 1 HTH domain Peptidase_C11 PF03415.9 gi|336476018|ref|YP_004615159.1| - 0.014 14.3 0.1 0.026 13.5 0.1 1.4 1 0 0 1 1 1 0 Clostripain family HTH_25 PF13413.1 gi|336476018|ref|YP_004615159.1| - 0.043 13.4 0.0 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|336476018|ref|YP_004615159.1| - 0.055 13.1 0.0 0.2 11.3 0.0 1.9 1 0 0 1 1 1 0 MarR family MerR_1 PF13411.1 gi|336476018|ref|YP_004615159.1| - 0.075 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|336476018|ref|YP_004615159.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|336476018|ref|YP_004615159.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Formyl_trans_N PF00551.14 gi|336476019|ref|YP_004615160.1| - 2.1e-53 180.5 0.0 2.5e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase ubiquitin PF00240.18 gi|336476019|ref|YP_004615160.1| - 0.044 13.1 0.1 0.3 10.4 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin family SHMT PF00464.14 gi|336476020|ref|YP_004615161.1| - 9.2e-169 561.0 0.3 1.1e-168 560.7 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|336476020|ref|YP_004615161.1| - 3.9e-08 32.6 0.0 5.4e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336476020|ref|YP_004615161.1| - 2.9e-06 26.6 0.1 4.2e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336476020|ref|YP_004615161.1| - 0.00011 21.0 0.0 0.00015 20.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|336476020|ref|YP_004615161.1| - 0.0012 17.4 0.0 0.0019 16.8 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain THF_DHG_CYH_C PF02882.14 gi|336476021|ref|YP_004615162.1| - 3.2e-64 214.8 1.3 4.3e-64 214.4 0.9 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|336476021|ref|YP_004615162.1| - 3.5e-41 139.9 0.7 5.5e-41 139.2 0.5 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.16 gi|336476021|ref|YP_004615162.1| - 0.00058 19.7 1.3 0.038 13.8 0.9 2.2 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PTS_IIB PF02302.12 gi|336476021|ref|YP_004615162.1| - 0.031 14.7 0.6 0.066 13.7 0.1 1.9 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Shikimate_DH PF01488.15 gi|336476021|ref|YP_004615162.1| - 0.053 13.6 0.1 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Pterin_bind PF00809.17 gi|336476022|ref|YP_004615163.1| - 2.1e-44 151.4 0.9 2.1e-44 151.4 0.6 1.5 2 0 0 2 2 2 1 Pterin binding enzyme MTHFR_C PF12225.3 gi|336476023|ref|YP_004615164.1| - 4.7e-30 102.9 4.6 4.7e-30 102.9 3.2 1.6 2 0 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal MTHFR PF02219.12 gi|336476024|ref|YP_004615165.1| - 2e-37 128.8 0.0 2.2e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Glyco_transf_28 PF03033.15 gi|336476024|ref|YP_004615165.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain ThiC PF01964.13 gi|336476025|ref|YP_004615166.1| - 6e-147 489.5 0.0 6.8e-147 489.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family F420_ligase PF01996.11 gi|336476026|ref|YP_004615167.1| - 3.5e-61 206.1 0.2 4e-61 205.9 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase L_biotic_typeA PF04604.8 gi|336476026|ref|YP_004615167.1| - 0.047 13.3 0.2 0.095 12.3 0.2 1.4 1 0 0 1 1 1 0 Type-A lantibiotic Thioredoxin PF00085.15 gi|336476028|ref|YP_004615169.1| - 2.8e-24 84.7 0.0 3e-24 84.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336476028|ref|YP_004615169.1| - 4.7e-12 46.1 0.1 2e-11 44.0 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|336476028|ref|YP_004615169.1| - 2.5e-08 33.9 0.0 7.3e-07 29.2 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|336476028|ref|YP_004615169.1| - 1.5e-06 27.9 0.1 1.8e-06 27.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|336476028|ref|YP_004615169.1| - 6.3e-06 26.1 0.0 8.4e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|336476028|ref|YP_004615169.1| - 2e-05 24.1 0.1 0.001 18.6 0.0 2.0 1 1 1 2 2 2 1 Redoxin Glutaredoxin PF00462.19 gi|336476028|ref|YP_004615169.1| - 2.4e-05 24.2 0.1 5e-05 23.2 0.1 1.6 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_9 PF14595.1 gi|336476028|ref|YP_004615169.1| - 0.00017 21.1 0.0 0.00021 20.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.7 gi|336476028|ref|YP_004615169.1| - 0.00054 19.3 0.0 0.00063 19.1 0.0 1.1 1 0 0 1 1 1 1 KaiB domain DUF836 PF05768.9 gi|336476028|ref|YP_004615169.1| - 0.00059 20.0 0.0 0.00069 19.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) HyaE PF07449.6 gi|336476028|ref|YP_004615169.1| - 0.0008 19.2 0.0 0.00093 19.0 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.16 gi|336476028|ref|YP_004615169.1| - 0.0023 17.6 0.1 0.0082 15.8 0.0 1.7 1 1 1 2 2 2 1 AhpC/TSA family TraF PF13728.1 gi|336476028|ref|YP_004615169.1| - 0.024 14.1 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein TrbC_Ftype PF09673.5 gi|336476028|ref|YP_004615169.1| - 0.036 13.6 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein ABC_transp_aux PF09822.4 gi|336476028|ref|YP_004615169.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.0 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF3354 PF11834.3 gi|336476028|ref|YP_004615169.1| - 0.14 11.8 1.2 0.3 10.7 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3354) Lactamase_B_2 PF12706.2 gi|336476029|ref|YP_004615170.1| - 2.3e-10 40.3 0.1 1.4e-09 37.7 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336476029|ref|YP_004615170.1| - 0.0032 17.1 3.7 0.0056 16.3 1.7 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|336476029|ref|YP_004615170.1| - 0.0086 15.8 0.1 0.033 13.9 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FUSC_2 PF13515.1 gi|336476030|ref|YP_004615171.1| - 0.0014 18.5 2.2 0.0015 18.4 1.5 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like DUF1469 PF07332.6 gi|336476030|ref|YP_004615171.1| - 0.029 14.0 0.4 0.053 13.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4366 PF14283.1 gi|336476030|ref|YP_004615171.1| - 0.11 11.9 0.1 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF4407 PF14362.1 gi|336476030|ref|YP_004615171.1| - 0.14 11.0 5.4 0.088 11.7 2.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3487 PF11990.3 gi|336476030|ref|YP_004615171.1| - 0.42 10.0 1.9 0.74 9.2 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) FtsX PF02687.16 gi|336476030|ref|YP_004615171.1| - 1.2 8.9 8.7 2.4 7.9 6.0 1.6 1 1 0 1 1 1 0 FtsX-like permease family Rab5ip PF07019.7 gi|336476030|ref|YP_004615171.1| - 1.2 9.2 8.5 2.6 8.2 5.9 1.6 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) ABC_tran PF00005.22 gi|336476031|ref|YP_004615172.1| - 3.5e-40 137.4 0.0 1.7e-21 76.9 0.0 3.0 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|336476031|ref|YP_004615172.1| - 2.8e-15 57.0 4.3 0.0031 17.5 0.0 4.3 2 2 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|336476031|ref|YP_004615172.1| - 1.2e-14 54.1 6.9 2.5e-05 23.6 0.0 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|336476031|ref|YP_004615172.1| - 5.2e-13 48.3 2.8 1e-12 47.4 2.0 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_25 PF13481.1 gi|336476031|ref|YP_004615172.1| - 6e-08 32.3 0.1 0.00061 19.2 0.0 3.2 3 0 0 3 3 3 2 AAA domain Fer4 PF00037.22 gi|336476031|ref|YP_004615172.1| - 2.2e-07 30.2 5.0 2.2e-07 30.2 3.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain DUF258 PF03193.11 gi|336476031|ref|YP_004615172.1| - 1e-06 28.0 3.3 0.0038 16.4 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336476031|ref|YP_004615172.1| - 3.5e-06 26.4 0.5 0.032 13.7 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|336476031|ref|YP_004615172.1| - 6.6e-06 26.9 0.5 0.025 15.3 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|336476031|ref|YP_004615172.1| - 1.5e-05 25.4 0.4 0.072 13.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|336476031|ref|YP_004615172.1| - 3e-05 22.9 0.0 0.12 11.0 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|336476031|ref|YP_004615172.1| - 3.6e-05 23.9 0.0 0.29 11.3 0.0 2.8 3 0 0 3 3 2 2 RNA helicase AAA PF00004.24 gi|336476031|ref|YP_004615172.1| - 6.4e-05 23.1 0.0 0.077 13.2 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336476031|ref|YP_004615172.1| - 7.8e-05 22.8 0.4 0.047 13.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336476031|ref|YP_004615172.1| - 8.9e-05 22.5 0.0 0.14 12.1 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain Fer4_7 PF12838.2 gi|336476031|ref|YP_004615172.1| - 0.00011 22.5 8.9 0.00025 21.3 6.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.1 gi|336476031|ref|YP_004615172.1| - 0.00017 21.4 0.1 0.28 11.1 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_21 PF14697.1 gi|336476031|ref|YP_004615172.1| - 0.00037 20.2 6.8 0.00066 19.4 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476031|ref|YP_004615172.1| - 0.00065 19.9 9.6 0.0013 18.9 6.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_14 PF13173.1 gi|336476031|ref|YP_004615172.1| - 0.00084 19.2 0.2 2.5 7.9 0.0 3.4 3 0 0 3 3 3 1 AAA domain Fer4_6 PF12837.2 gi|336476031|ref|YP_004615172.1| - 0.00088 19.0 13.1 0.0062 16.3 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_15 PF13175.1 gi|336476031|ref|YP_004615172.1| - 0.00092 18.3 0.3 0.057 12.4 0.0 3.0 3 1 0 3 3 3 1 AAA ATPase domain DUF87 PF01935.12 gi|336476031|ref|YP_004615172.1| - 0.0014 18.5 0.2 2.8 7.7 0.0 2.9 3 0 0 3 3 2 2 Domain of unknown function DUF87 NACHT PF05729.7 gi|336476031|ref|YP_004615172.1| - 0.0035 17.0 0.2 0.43 10.2 0.0 2.4 2 0 0 2 2 2 1 NACHT domain VirE PF05272.6 gi|336476031|ref|YP_004615172.1| - 0.005 16.3 0.0 1.5 8.2 0.0 2.6 2 0 0 2 2 2 1 Virulence-associated protein E ArgK PF03308.11 gi|336476031|ref|YP_004615172.1| - 0.005 15.6 0.6 0.72 8.5 0.0 2.2 2 0 0 2 2 2 1 ArgK protein Fer4_2 PF12797.2 gi|336476031|ref|YP_004615172.1| - 0.0058 16.4 3.4 0.0058 16.4 2.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_18 PF13238.1 gi|336476031|ref|YP_004615172.1| - 0.0061 16.8 0.0 7 6.9 0.0 3.0 2 1 0 2 2 2 0 AAA domain Fer4_11 PF13247.1 gi|336476031|ref|YP_004615172.1| - 0.01 15.6 2.7 0.02 14.7 1.9 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476031|ref|YP_004615172.1| - 0.013 15.2 2.0 0.013 15.2 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain MMR_HSR1 PF01926.18 gi|336476031|ref|YP_004615172.1| - 0.015 15.2 0.5 0.51 10.3 0.0 2.7 2 2 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.9 gi|336476031|ref|YP_004615172.1| - 0.022 14.4 1.2 0.67 9.6 0.0 2.9 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|336476031|ref|YP_004615172.1| - 0.032 14.0 0.3 1.2 8.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|336476031|ref|YP_004615172.1| - 0.035 14.6 0.1 0.61 10.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein AAA_10 PF12846.2 gi|336476031|ref|YP_004615172.1| - 0.038 13.4 2.9 6.4 6.1 0.0 3.1 4 0 0 4 4 4 0 AAA-like domain NTPase_1 PF03266.10 gi|336476031|ref|YP_004615172.1| - 0.04 13.6 0.4 4.7 6.8 0.0 2.8 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.9 gi|336476031|ref|YP_004615172.1| - 0.041 13.5 0.5 8.6 6.0 0.0 3.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Fer4_16 PF13484.1 gi|336476031|ref|YP_004615172.1| - 0.065 13.9 0.2 0.065 13.9 0.2 2.4 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain AAA_24 PF13479.1 gi|336476031|ref|YP_004615172.1| - 0.21 11.1 1.0 21 4.5 0.1 2.7 3 0 0 3 3 2 0 AAA domain Fer4_18 PF13746.1 gi|336476031|ref|YP_004615172.1| - 0.24 11.8 10.4 0.36 11.2 6.0 2.0 1 1 1 2 2 1 0 4Fe-4S dicluster domain UPF0079 PF02367.12 gi|336476031|ref|YP_004615172.1| - 0.8 9.3 0.0 0.8 9.3 0.0 2.3 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 Fer4_8 PF13183.1 gi|336476031|ref|YP_004615172.1| - 0.99 9.4 8.7 0.14 12.2 1.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336476031|ref|YP_004615172.1| - 1.7 9.3 14.3 0.09 13.3 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336476031|ref|YP_004615172.1| - 3.1 8.3 13.1 0.51 10.8 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Cyt-b5 PF00173.23 gi|336476032|ref|YP_004615173.1| - 9.5e-11 41.3 0.2 1.1e-10 41.1 0.2 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain Jiv90 PF14901.1 gi|336476032|ref|YP_004615173.1| - 0.15 12.0 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone MS_channel PF00924.13 gi|336476033|ref|YP_004615174.1| - 7.6e-49 165.8 0.4 7.6e-49 165.8 0.3 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel SUR7 PF06687.7 gi|336476033|ref|YP_004615174.1| - 0.12 11.9 5.2 0.18 11.3 3.6 1.3 1 0 0 1 1 1 0 SUR7/PalI family DUF2177 PF09945.4 gi|336476033|ref|YP_004615174.1| - 0.2 11.6 3.7 0.33 10.9 2.6 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2177) DUF3975 PF13126.1 gi|336476033|ref|YP_004615174.1| - 0.64 10.2 8.1 0.77 9.9 4.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3975) Iso_dh PF00180.15 gi|336476034|ref|YP_004615175.1| - 3.9e-95 318.7 0.0 4.5e-95 318.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|336476035|ref|YP_004615176.1| - 3.3e-21 75.7 0.0 6.9e-21 74.7 0.0 1.7 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|336476035|ref|YP_004615176.1| - 0.0051 16.2 0.2 0.039 13.3 0.1 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Peptidase_M29 PF02073.10 gi|336476036|ref|YP_004615177.1| - 2.2e-17 62.9 0.0 1.7e-13 50.1 0.0 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) AAA_10 PF12846.2 gi|336476037|ref|YP_004615178.1| - 2.9e-15 56.5 0.2 1.2e-14 54.4 0.2 1.8 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|336476037|ref|YP_004615178.1| - 4.3e-11 43.0 0.0 7e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|336476037|ref|YP_004615178.1| - 7e-06 24.6 0.0 1.9e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|336476037|ref|YP_004615178.1| - 7.5e-06 25.5 0.1 2.5e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|336476037|ref|YP_004615178.1| - 5.9e-05 22.6 0.2 0.26 10.7 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|336476037|ref|YP_004615178.1| - 0.00018 21.7 0.1 0.014 15.6 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336476037|ref|YP_004615178.1| - 0.00045 20.3 0.0 0.5 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain MFS_1 PF07690.11 gi|336476038|ref|YP_004615179.1| - 3.7e-54 183.7 61.7 7.6e-38 130.1 20.7 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|336476038|ref|YP_004615179.1| - 7.8e-16 57.6 40.4 2.8e-13 49.2 10.1 3.1 2 1 0 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.1 gi|336476038|ref|YP_004615179.1| - 1.2e-08 33.8 39.8 0.00016 20.1 15.4 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein TRI12 PF06609.8 gi|336476038|ref|YP_004615179.1| - 0.0001 20.6 8.9 0.0001 20.6 6.2 2.1 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) OATP PF03137.15 gi|336476038|ref|YP_004615179.1| - 0.00017 19.7 3.2 0.00017 19.7 2.2 4.2 3 1 1 4 4 4 2 Organic Anion Transporter Polypeptide (OATP) family BT1 PF03092.11 gi|336476038|ref|YP_004615179.1| - 0.00031 19.6 4.1 0.00031 19.6 2.9 2.4 1 1 0 2 2 2 2 BT1 family MFS_1_like PF12832.2 gi|336476038|ref|YP_004615179.1| - 0.21 11.4 7.6 2.1 8.2 0.9 3.7 3 0 0 3 3 3 0 MFS_1 like family FAD_binding_2 PF00890.19 gi|336476039|ref|YP_004615180.1| - 5.1e-14 51.9 0.3 3e-05 23.0 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.17 gi|336476039|ref|YP_004615180.1| - 7.3e-13 48.1 0.3 3.6e-05 22.8 0.0 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|336476039|ref|YP_004615180.1| - 8.7e-12 45.3 0.0 0.00011 22.1 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336476039|ref|YP_004615180.1| - 1.4e-10 40.6 0.0 0.00021 20.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336476039|ref|YP_004615180.1| - 3.4e-10 38.9 0.1 1.2e-06 27.2 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|336476039|ref|YP_004615180.1| - 8.2e-06 25.7 0.0 0.00079 19.4 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|336476039|ref|YP_004615180.1| - 9.2e-06 25.9 0.0 0.059 13.7 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336476039|ref|YP_004615180.1| - 0.00018 20.6 0.0 0.00035 19.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|336476039|ref|YP_004615180.1| - 0.00021 20.4 0.1 0.014 14.5 0.0 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|336476039|ref|YP_004615180.1| - 0.00023 21.2 0.2 0.0024 17.9 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336476039|ref|YP_004615180.1| - 0.003 16.5 0.1 0.0046 15.9 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|336476039|ref|YP_004615180.1| - 0.0035 16.4 0.1 0.066 12.2 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase TMP-TENI PF02581.12 gi|336476039|ref|YP_004615180.1| - 0.033 13.3 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DJ-1_PfpI PF01965.19 gi|336476039|ref|YP_004615180.1| - 0.051 13.0 0.0 11 5.4 0.0 2.8 3 0 0 3 3 3 0 DJ-1/PfpI family NADH_4Fe-4S PF10589.4 gi|336476039|ref|YP_004615180.1| - 2.7 7.2 5.1 15 4.8 0.0 3.5 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DUF1297 PF06973.7 gi|336476040|ref|YP_004615181.1| - 6.2e-67 224.5 0.2 8.4e-67 224.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|336476040|ref|YP_004615181.1| - 3.2e-47 159.3 0.0 7.7e-47 158.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|336476040|ref|YP_004615181.1| - 2.2e-05 24.2 0.0 0.0036 17.0 0.0 2.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476040|ref|YP_004615181.1| - 0.00015 21.6 0.0 0.00084 19.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|336476040|ref|YP_004615181.1| - 0.081 12.2 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.2 gi|336476041|ref|YP_004615182.1| - 4.4e-11 42.4 0.0 6.4e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336476041|ref|YP_004615182.1| - 1.2e-06 27.7 0.3 2.1e-06 27.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|336476041|ref|YP_004615182.1| - 1.8e-06 27.5 0.0 2.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_IclR PF09339.5 gi|336476041|ref|YP_004615182.1| - 2.3e-06 27.0 0.0 3.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|336476041|ref|YP_004615182.1| - 5e-05 22.9 0.1 9.3e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|336476041|ref|YP_004615182.1| - 8.3e-05 22.1 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|336476041|ref|YP_004615182.1| - 0.0035 17.1 0.8 0.022 14.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|336476041|ref|YP_004615182.1| - 0.014 15.2 0.1 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|336476041|ref|YP_004615182.1| - 0.023 14.9 0.1 0.049 13.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|336476041|ref|YP_004615182.1| - 0.061 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family Phage_rep_org_N PF09681.5 gi|336476041|ref|YP_004615182.1| - 0.087 12.4 0.1 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PseudoU_synth_1 PF01416.15 gi|336476042|ref|YP_004615183.1| - 1.2e-36 125.3 0.0 6e-21 74.8 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase UPF0020 PF01170.13 gi|336476043|ref|YP_004615184.1| - 4.4e-38 130.6 0.1 1.8e-37 128.6 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|336476043|ref|YP_004615184.1| - 1.6e-16 60.4 0.0 2.8e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476043|ref|YP_004615184.1| - 4.7e-11 42.4 0.0 2.3e-10 40.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336476043|ref|YP_004615184.1| - 1.2e-09 38.5 0.0 3.1e-09 37.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|336476043|ref|YP_004615184.1| - 5.5e-09 36.0 0.0 9.4e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.13 gi|336476043|ref|YP_004615184.1| - 2.3e-08 33.8 0.0 2.6e-05 23.8 0.0 2.4 2 0 0 2 2 2 2 DNA methylase Methyltransf_18 PF12847.2 gi|336476043|ref|YP_004615184.1| - 1.1e-06 29.2 0.0 1.9e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336476043|ref|YP_004615184.1| - 1.4e-06 27.7 0.0 2.3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|336476043|ref|YP_004615184.1| - 2.3e-06 27.0 0.0 3.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|336476043|ref|YP_004615184.1| - 7.5e-06 25.6 0.0 1.4e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|336476043|ref|YP_004615184.1| - 4.5e-05 22.6 0.0 9.2e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|336476043|ref|YP_004615184.1| - 5.6e-05 22.3 0.0 9.3e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase MethyltransfD12 PF02086.10 gi|336476043|ref|YP_004615184.1| - 0.014 14.8 0.1 0.2 11.0 0.0 2.4 2 1 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_8 PF05148.10 gi|336476043|ref|YP_004615184.1| - 0.016 14.8 0.0 0.041 13.5 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_25 PF13649.1 gi|336476043|ref|YP_004615184.1| - 0.022 15.1 0.0 0.045 14.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF4478 PF14793.1 gi|336476043|ref|YP_004615184.1| - 0.073 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4478) DUF1805 PF08827.6 gi|336476044|ref|YP_004615185.1| - 7.2e-22 76.9 0.4 9.6e-22 76.5 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Rod-binding PF10135.4 gi|336476044|ref|YP_004615185.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Rod binding protein CutC PF03932.9 gi|336476044|ref|YP_004615185.1| - 0.093 11.9 0.1 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 CutC family Peptidase_M24 PF00557.19 gi|336476046|ref|YP_004615187.1| - 6.9e-44 149.9 0.0 8.1e-44 149.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.11 gi|336476046|ref|YP_004615187.1| - 0.0078 16.6 0.1 0.16 12.4 0.1 2.4 2 0 0 2 2 2 1 ATP cone domain Peptidase_M24 PF00557.19 gi|336476047|ref|YP_004615188.1| - 9e-42 142.9 0.7 1.2e-41 142.6 0.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 AdoMet_Synthase PF01941.14 gi|336476049|ref|YP_004615190.1| - 8.8e-180 597.3 2.2 9.9e-180 597.2 1.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.13 gi|336476050|ref|YP_004615191.1| - 1.3e-51 174.4 0.3 1.9e-51 173.8 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|336476050|ref|YP_004615191.1| - 1.3e-25 89.1 0.3 2.5e-25 88.2 0.2 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|336476050|ref|YP_004615191.1| - 0.0091 15.6 0.0 0.5 9.9 0.0 2.2 1 1 1 2 2 2 2 NMT1/THI5 like DUF498 PF04430.9 gi|336476050|ref|YP_004615191.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) His_biosynth PF00977.16 gi|336476051|ref|YP_004615192.1| - 2.6e-75 252.6 1.0 2.9e-75 252.4 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|336476051|ref|YP_004615192.1| - 3e-08 32.9 0.8 3.9e-07 29.3 0.2 2.3 3 0 0 3 3 3 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|336476051|ref|YP_004615192.1| - 5.7e-08 31.9 0.1 0.0019 17.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|336476051|ref|YP_004615192.1| - 8.3e-07 28.4 0.9 0.0016 17.7 0.0 2.1 2 0 0 2 2 2 2 PcrB family NMO PF03060.10 gi|336476051|ref|YP_004615192.1| - 1.1e-05 24.7 0.4 3.7e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|336476051|ref|YP_004615192.1| - 2.1e-05 23.5 0.1 0.04 12.8 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|336476051|ref|YP_004615192.1| - 0.00015 20.9 0.7 0.24 10.4 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|336476051|ref|YP_004615192.1| - 0.00015 20.9 0.1 0.00052 19.1 0.1 1.8 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|336476051|ref|YP_004615192.1| - 0.00016 20.8 0.5 0.00025 20.2 0.1 1.5 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|336476051|ref|YP_004615192.1| - 0.00019 20.3 1.2 0.0011 17.9 0.4 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|336476051|ref|YP_004615192.1| - 0.00024 20.1 1.1 0.0036 16.2 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|336476051|ref|YP_004615192.1| - 0.00094 18.2 0.4 0.0015 17.5 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF561) Trp_syntA PF00290.15 gi|336476051|ref|YP_004615192.1| - 0.0077 14.7 0.9 0.079 11.4 0.2 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain IGPD PF00475.13 gi|336476052|ref|YP_004615193.1| - 7.3e-65 217.2 2.1 9e-65 216.9 1.4 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase MutS_V PF00488.16 gi|336476053|ref|YP_004615194.1| - 2.5e-12 46.6 0.0 5.7e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|336476053|ref|YP_004615194.1| - 5.7e-06 26.4 0.0 6.8e-05 22.9 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_21 PF13304.1 gi|336476053|ref|YP_004615194.1| - 0.00015 21.7 11.2 0.0098 15.8 0.0 4.5 5 0 0 5 5 5 2 AAA domain HHH_2 PF12826.2 gi|336476053|ref|YP_004615194.1| - 0.0014 18.4 0.1 0.005 16.6 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA PF00004.24 gi|336476053|ref|YP_004615194.1| - 0.0034 17.5 0.3 0.013 15.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HHH PF00633.18 gi|336476053|ref|YP_004615194.1| - 0.011 15.4 0.0 0.043 13.5 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|336476053|ref|YP_004615194.1| - 0.031 14.3 0.0 0.13 12.3 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif 5_3_exonuc PF01367.15 gi|336476053|ref|YP_004615194.1| - 0.063 13.5 0.0 0.56 10.4 0.0 2.7 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DUF4130 PF13566.1 gi|336476054|ref|YP_004615195.1| - 0.00012 21.6 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 DUF925 PF06042.6 gi|336476055|ref|YP_004615196.1| - 0.024 14.2 0.1 0.027 14.0 0.1 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF925) Fucose_iso_N1 PF07881.7 gi|336476055|ref|YP_004615196.1| - 0.087 12.3 0.0 0.087 12.3 0.0 1.0 1 0 0 1 1 1 0 L-fucose isomerase, first N-terminal domain Radical_SAM PF04055.16 gi|336476056|ref|YP_004615197.1| - 1.8e-08 34.7 0.1 4.3e-08 33.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|336476056|ref|YP_004615197.1| - 4.3e-05 23.3 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336476056|ref|YP_004615197.1| - 0.00087 19.4 0.0 0.0029 17.7 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|336476056|ref|YP_004615197.1| - 0.0011 18.5 0.0 0.0025 17.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|336476056|ref|YP_004615197.1| - 0.0013 18.8 0.0 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain LAGLIDADG_WhiA PF14527.1 gi|336476056|ref|YP_004615197.1| - 0.017 14.9 0.0 0.34 10.8 0.0 2.6 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain HHH_2 PF12826.2 gi|336476056|ref|YP_004615197.1| - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_20 PF12840.2 gi|336476057|ref|YP_004615198.1| - 9.9e-13 47.6 0.0 2.4e-12 46.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336476057|ref|YP_004615198.1| - 2.2e-10 40.0 0.4 4e-10 39.1 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336476057|ref|YP_004615198.1| - 4.4e-06 25.9 0.1 9.4e-06 24.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336476057|ref|YP_004615198.1| - 0.00013 21.5 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336476057|ref|YP_004615198.1| - 0.00017 21.2 0.1 0.003 17.2 0.1 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|336476057|ref|YP_004615198.1| - 0.00033 20.2 0.1 0.0006 19.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|336476057|ref|YP_004615198.1| - 0.0018 18.2 0.1 0.0092 15.9 0.0 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336476057|ref|YP_004615198.1| - 0.0077 16.3 0.2 0.039 14.0 0.1 2.0 2 1 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|336476057|ref|YP_004615198.1| - 0.018 14.7 0.1 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF1628 PF07790.6 gi|336476058|ref|YP_004615199.1| - 1.6e-16 60.8 1.4 2.6e-16 60.1 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) ATP-synt_ab_N PF02874.18 gi|336476058|ref|YP_004615199.1| - 0.098 12.8 1.9 0.38 11.0 0.1 2.6 2 1 0 2 2 2 0 ATP synthase alpha/beta family, beta-barrel domain Glug PF07581.7 gi|336476059|ref|YP_004615200.1| - 4.5e-05 23.3 31.2 0.003 17.6 4.9 4.4 4 0 0 4 4 4 2 The GLUG motif DUF1628 PF07790.6 gi|336476059|ref|YP_004615200.1| - 0.021 15.5 2.5 0.043 14.5 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) Pro_isomerase PF00160.16 gi|336476060|ref|YP_004615201.1| - 1.1e-48 165.3 0.4 1.3e-48 165.1 0.3 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HEM4 PF02602.10 gi|336476061|ref|YP_004615202.1| - 6.6e-36 123.6 0.0 8.1e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD MGS PF02142.17 gi|336476061|ref|YP_004615202.1| - 0.033 14.1 0.0 1.2 9.1 0.0 2.5 3 0 0 3 3 3 0 MGS-like domain Hexapep PF00132.19 gi|336476062|ref|YP_004615203.1| - 1.5e-12 46.3 3.8 0.00037 19.8 0.1 4.5 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336476062|ref|YP_004615203.1| - 9.4e-07 28.2 4.0 3.4e-05 23.3 0.5 3.7 5 0 0 5 5 5 1 Hexapeptide repeat of succinyl-transferase Aminotran_4 PF01063.14 gi|336476063|ref|YP_004615204.1| - 1.1e-49 168.9 0.0 1.4e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV DUF2306 PF10067.4 gi|336476064|ref|YP_004615205.1| - 0.024 14.7 1.5 0.027 14.5 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) TRP PF06011.7 gi|336476064|ref|YP_004615205.1| - 0.062 11.8 1.3 0.066 11.7 0.9 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel VIT1 PF01988.14 gi|336476064|ref|YP_004615205.1| - 0.11 12.0 1.8 0.12 11.7 1.2 1.0 1 0 0 1 1 1 0 VIT family RDD PF06271.7 gi|336476064|ref|YP_004615205.1| - 0.25 11.2 3.0 0.3 10.9 2.1 1.1 1 0 0 1 1 1 0 RDD family MoeA_N PF03453.12 gi|336476065|ref|YP_004615206.1| - 2.8e-47 160.0 0.0 4.7e-47 159.3 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|336476065|ref|YP_004615206.1| - 2.8e-42 143.8 0.0 4.6e-42 143.1 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|336476065|ref|YP_004615206.1| - 6.8e-26 90.3 0.1 1.1e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|336476065|ref|YP_004615206.1| - 2.6e-11 43.2 0.0 8.5e-11 41.6 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MMR_HSR1 PF01926.18 gi|336476066|ref|YP_004615207.1| - 3.3e-19 68.9 0.0 6.8e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|336476066|ref|YP_004615207.1| - 6e-18 64.4 0.0 1.2e-17 63.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|336476066|ref|YP_004615207.1| - 3.4e-14 52.4 0.2 1.1e-13 50.7 0.0 1.9 1 1 2 3 3 3 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|336476066|ref|YP_004615207.1| - 0.00014 21.7 0.5 0.082 12.7 0.1 2.6 2 1 1 3 3 3 2 Dynamin family ABC_tran PF00005.22 gi|336476066|ref|YP_004615207.1| - 0.0052 17.0 0.2 0.15 12.3 0.0 2.3 2 0 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|336476066|ref|YP_004615207.1| - 0.012 14.8 0.1 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336476066|ref|YP_004615207.1| - 0.014 15.3 0.1 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|336476066|ref|YP_004615207.1| - 0.027 13.2 1.1 0.083 11.6 0.0 2.2 2 1 1 3 3 3 0 ArgK protein Miro PF08477.8 gi|336476066|ref|YP_004615207.1| - 0.057 13.9 0.0 0.14 12.6 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|336476066|ref|YP_004615207.1| - 0.068 13.1 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|336476066|ref|YP_004615207.1| - 0.084 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|336476066|ref|YP_004615207.1| - 0.11 12.7 0.7 0.42 10.9 0.5 2.2 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|336476066|ref|YP_004615207.1| - 0.24 10.8 2.4 12 5.2 0.6 3.1 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|336476066|ref|YP_004615207.1| - 0.24 10.7 2.7 1.8 7.9 0.1 2.6 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Phage_integrase PF00589.17 gi|336476067|ref|YP_004615208.1| - 4.5e-20 72.0 0.0 8.2e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|336476067|ref|YP_004615208.1| - 0.00021 21.5 0.0 0.0004 20.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|336476067|ref|YP_004615208.1| - 0.0026 17.8 0.0 0.14 12.3 0.0 2.4 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.1 gi|336476067|ref|YP_004615208.1| - 0.016 14.6 2.7 0.032 13.7 1.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Phage_int_SAM_3 PF14659.1 gi|336476067|ref|YP_004615208.1| - 0.023 14.9 1.2 0.36 11.1 1.2 2.5 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain DZR PF12773.2 gi|336476067|ref|YP_004615208.1| - 0.027 14.3 0.7 0.051 13.3 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ish1 PF10281.4 gi|336476067|ref|YP_004615208.1| - 0.11 12.5 0.2 0.24 11.5 0.2 1.6 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein zf-ribbon_3 PF13248.1 gi|336476067|ref|YP_004615208.1| - 0.14 11.4 1.9 0.27 10.4 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Phage_integrase PF00589.17 gi|336476068|ref|YP_004615209.1| - 4.2e-22 78.6 0.2 1.2e-21 77.1 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family UPF0547 PF10571.4 gi|336476068|ref|YP_004615209.1| - 0.048 13.3 1.3 0.087 12.5 0.9 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|336476068|ref|YP_004615209.1| - 0.13 12.1 1.4 0.25 11.2 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|336476068|ref|YP_004615209.1| - 0.13 11.9 1.5 0.26 11.0 1.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DDE_Tnp_1 PF01609.16 gi|336476069|ref|YP_004615210.1| - 2.2e-17 63.3 3.2 8e-17 61.4 2.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|336476069|ref|YP_004615210.1| - 0.00019 21.0 0.9 0.00031 20.3 0.6 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|336476069|ref|YP_004615210.1| - 0.0003 20.8 1.5 0.00058 19.8 1.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|336476069|ref|YP_004615210.1| - 0.0012 18.9 2.0 0.0012 18.9 0.3 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|336476069|ref|YP_004615210.1| - 0.01 15.6 0.9 0.022 14.5 0.6 1.6 1 0 0 1 1 1 0 Transposase DDE domain DUF772 PF05598.6 gi|336476069|ref|YP_004615210.1| - 0.086 12.7 0.1 0.24 11.3 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) ResIII PF04851.10 gi|336476070|ref|YP_004615211.1| - 1.7e-10 41.0 0.6 1.7e-10 41.0 0.4 3.4 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|336476070|ref|YP_004615211.1| - 0.00034 20.1 0.0 0.00092 18.7 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DDE_Tnp_1 PF01609.16 gi|336476071|ref|YP_004615212.1| - 2.1e-17 63.4 3.2 7.3e-17 61.6 2.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|336476071|ref|YP_004615212.1| - 0.00018 21.1 0.9 0.00028 20.5 0.6 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|336476071|ref|YP_004615212.1| - 0.00028 20.8 1.5 0.00055 19.9 1.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|336476071|ref|YP_004615212.1| - 0.00089 19.4 1.7 0.0011 19.1 0.2 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|336476071|ref|YP_004615212.1| - 0.0093 15.7 0.9 0.02 14.6 0.6 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|336476071|ref|YP_004615212.1| - 0.081 12.8 0.1 0.22 11.4 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DUF3887 PF13026.1 gi|336476071|ref|YP_004615212.1| - 0.3 11.3 3.1 0.17 12.1 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3887) UvrD-helicase PF00580.16 gi|336476072|ref|YP_004615213.1| - 4e-65 220.1 1.1 4e-65 220.1 0.8 4.3 2 2 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|336476072|ref|YP_004615213.1| - 9.8e-44 150.2 17.1 9.8e-44 150.2 11.9 1.9 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|336476072|ref|YP_004615213.1| - 8.7e-28 97.3 0.6 2.2e-27 96.0 0.4 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|336476072|ref|YP_004615213.1| - 1.3e-11 44.0 0.0 2.3e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|336476072|ref|YP_004615213.1| - 4.3e-07 29.7 0.0 1.2e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|336476072|ref|YP_004615213.1| - 1.4e-06 28.3 0.0 1.1e-05 25.5 0.0 2.5 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_11 PF13086.1 gi|336476072|ref|YP_004615213.1| - 5.6e-05 22.8 0.0 0.00019 21.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain Helicase_RecD PF05127.9 gi|336476072|ref|YP_004615213.1| - 0.0072 15.9 0.0 0.021 14.4 0.0 1.8 1 0 0 1 1 1 1 Helicase PhoH PF02562.11 gi|336476072|ref|YP_004615213.1| - 0.029 13.6 0.0 0.59 9.3 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.24 gi|336476072|ref|YP_004615213.1| - 0.081 12.4 0.0 0.22 10.9 0.0 1.8 1 0 0 1 1 1 0 DEAD/DEAH box helicase Phage_integrase PF00589.17 gi|336476073|ref|YP_004615214.1| - 2.6e-10 40.2 0.0 1.4e-09 37.8 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family AAA_22 PF13401.1 gi|336476075|ref|YP_004615216.1| - 7.1e-12 45.5 0.4 1.8e-11 44.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|336476075|ref|YP_004615216.1| - 2.2e-07 31.0 0.0 1e-06 28.8 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|336476075|ref|YP_004615216.1| - 2.4e-06 27.3 0.0 4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|336476075|ref|YP_004615216.1| - 4.3e-06 26.9 2.2 1.4e-05 25.2 0.2 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|336476075|ref|YP_004615216.1| - 5.9e-06 26.1 0.1 5.9e-06 26.1 0.1 2.2 2 1 0 2 2 2 1 Archaeal ATPase NB-ARC PF00931.17 gi|336476075|ref|YP_004615216.1| - 8.2e-05 21.5 0.0 0.00016 20.6 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Cdc6_C PF09079.6 gi|336476075|ref|YP_004615216.1| - 0.00016 21.2 0.3 0.00042 19.9 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal PhoH PF02562.11 gi|336476075|ref|YP_004615216.1| - 0.0006 19.0 0.1 1 8.5 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_5 PF07728.9 gi|336476075|ref|YP_004615216.1| - 0.00079 19.1 0.1 0.0046 16.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|336476075|ref|YP_004615216.1| - 0.00089 18.2 0.0 0.0022 16.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) KAP_NTPase PF07693.9 gi|336476075|ref|YP_004615216.1| - 0.0013 17.7 0.3 0.13 11.1 0.1 2.4 1 1 1 2 2 2 2 KAP family P-loop domain RNA_helicase PF00910.17 gi|336476075|ref|YP_004615216.1| - 0.0019 18.3 0.3 0.013 15.6 0.2 2.4 1 1 0 1 1 1 1 RNA helicase Miro PF08477.8 gi|336476075|ref|YP_004615216.1| - 0.0049 17.3 0.8 0.018 15.5 0.2 2.3 3 1 0 3 3 1 1 Miro-like protein AAA_24 PF13479.1 gi|336476075|ref|YP_004615216.1| - 0.0069 15.9 0.0 0.02 14.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|336476075|ref|YP_004615216.1| - 0.0076 15.4 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|336476075|ref|YP_004615216.1| - 0.0078 15.7 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_11 PF13086.1 gi|336476075|ref|YP_004615216.1| - 0.0086 15.6 0.4 0.039 13.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|336476075|ref|YP_004615216.1| - 0.011 14.8 0.5 0.13 11.3 0.0 2.2 2 0 0 2 2 2 0 KaiC SRPRB PF09439.5 gi|336476075|ref|YP_004615216.1| - 0.015 14.5 0.2 0.015 14.5 0.1 2.0 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF2075 PF09848.4 gi|336476075|ref|YP_004615216.1| - 0.015 14.2 0.0 0.026 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|336476075|ref|YP_004615216.1| - 0.021 14.6 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336476075|ref|YP_004615216.1| - 0.023 14.9 0.0 0.051 13.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter cobW PF02492.14 gi|336476075|ref|YP_004615216.1| - 0.025 14.0 0.1 0.057 12.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.10 gi|336476075|ref|YP_004615216.1| - 0.025 14.4 0.5 0.42 10.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|336476075|ref|YP_004615216.1| - 0.035 13.5 0.0 0.091 12.1 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|336476075|ref|YP_004615216.1| - 0.037 13.9 7.0 0.021 14.7 1.3 2.8 2 1 0 2 2 2 0 AAA domain Peptidase_S28 PF05577.7 gi|336476075|ref|YP_004615216.1| - 0.042 12.4 0.1 0.086 11.3 0.0 1.4 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Sigma54_activat PF00158.21 gi|336476075|ref|YP_004615216.1| - 0.046 13.2 0.1 0.75 9.2 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain DEAD PF00270.24 gi|336476075|ref|YP_004615216.1| - 0.046 13.2 0.6 2.7 7.4 0.4 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase NTPase_1 PF03266.10 gi|336476075|ref|YP_004615216.1| - 0.052 13.2 0.4 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|336476075|ref|YP_004615216.1| - 0.06 12.2 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.7 gi|336476075|ref|YP_004615216.1| - 0.095 11.7 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|336476075|ref|YP_004615216.1| - 0.12 12.6 2.7 1.7 8.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336476075|ref|YP_004615216.1| - 0.19 11.5 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|336476075|ref|YP_004615216.1| - 0.71 10.6 3.4 1 10.1 0.9 2.4 2 1 0 2 2 2 0 AAA domain DUF4379 PF14311.1 gi|336476077|ref|YP_004615218.1| - 7.3e-106 345.9 57.2 2.3e-19 68.9 1.7 6.2 6 0 0 6 6 6 6 Domain of unknown function (DUF4379) DUF559 PF04480.7 gi|336476077|ref|YP_004615218.1| - 0.023 14.3 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF559) DUF1818 PF08848.6 gi|336476077|ref|YP_004615218.1| - 0.048 13.7 0.0 4.8 7.2 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1818) AAL_decarboxy PF03306.8 gi|336476077|ref|YP_004615218.1| - 0.082 11.9 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Alpha-acetolactate decarboxylase zf-Di19 PF05605.7 gi|336476077|ref|YP_004615218.1| - 0.093 12.8 22.2 17 5.5 0.3 6.3 6 0 0 6 6 6 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_4 PF14447.1 gi|336476077|ref|YP_004615218.1| - 0.89 9.1 8.4 6.7 6.3 0.1 4.4 4 0 0 4 4 4 0 Prokaryotic RING finger family 4 FANCL_C PF11793.3 gi|336476077|ref|YP_004615218.1| - 5.6 7.0 18.0 9 6.3 0.1 5.8 6 0 0 6 6 6 0 FANCL C-terminal domain HTH_45 PF14947.1 gi|336476078|ref|YP_004615219.1| - 1.5e-20 72.7 3.0 1.8e-20 72.5 2.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|336476078|ref|YP_004615219.1| - 0.028 14.1 0.3 0.033 13.9 0.2 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Imm-NTF2 PF15655.1 gi|336476078|ref|YP_004615219.1| - 0.03 14.7 0.5 0.034 14.6 0.3 1.2 1 0 0 1 1 1 0 NTF2 fold immunity protein PDDEXK_4 PF14281.1 gi|336476079|ref|YP_004615220.1| - 8.2e-14 51.8 4.3 8.2e-14 51.8 3.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Borrelia_orfA PF02414.10 gi|336476080|ref|YP_004615221.1| - 0.0054 15.8 0.1 0.0054 15.8 0.1 1.5 2 0 0 2 2 2 1 Borrelia ORF-A PDZ_1 PF12812.2 gi|336476081|ref|YP_004615222.1| - 0.055 13.3 0.1 1.4 8.8 0.0 2.0 1 1 1 2 2 2 0 PDZ-like domain DDE_Tnp_1 PF01609.16 gi|336476082|ref|YP_004615223.1| - 5.2e-14 52.2 4.2 6.2e-14 52.0 2.9 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|336476082|ref|YP_004615223.1| - 4.1e-05 23.2 0.7 5.3e-05 22.8 0.5 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|336476082|ref|YP_004615223.1| - 8e-05 22.7 2.0 0.00015 21.9 0.2 2.3 2 2 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|336476082|ref|YP_004615223.1| - 8.7e-05 22.5 1.6 0.00015 21.7 1.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|336476082|ref|YP_004615223.1| - 0.0042 16.8 0.5 0.0066 16.2 0.4 1.4 1 1 0 1 1 1 1 Transposase DDE domain eRF1_1 PF03463.10 gi|336476082|ref|YP_004615223.1| - 0.15 11.6 1.9 0.23 11.0 0.4 1.9 2 0 0 2 2 2 0 eRF1 domain 1 Glug PF07581.7 gi|336476084|ref|YP_004615225.1| - 5.7e-25 85.8 83.2 1.4e-05 24.9 1.3 10.2 10 0 0 10 10 10 8 The GLUG motif Exo_endo_phos PF03372.18 gi|336476085|ref|YP_004615226.1| - 1.2e-08 35.2 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|336476085|ref|YP_004615226.1| - 2.7e-07 30.2 0.1 4.8e-07 29.3 0.0 1.5 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase OrfB_IS605 PF01385.14 gi|336476086|ref|YP_004615227.1| - 0.042 13.2 2.5 0.06 12.7 1.7 1.2 1 0 0 1 1 1 0 Probable transposase Tenui_NCP PF04876.7 gi|336476086|ref|YP_004615227.1| - 0.074 12.5 0.8 0.81 9.2 0.6 2.1 1 1 0 1 1 1 0 Tenuivirus major non-capsid protein Hyccin PF09790.4 gi|336476086|ref|YP_004615227.1| - 0.076 11.8 0.4 0.081 11.7 0.3 1.1 1 0 0 1 1 1 0 Hyccin Tmemb_9 PF05434.6 gi|336476086|ref|YP_004615227.1| - 0.17 11.6 2.0 0.33 10.6 1.4 1.4 1 0 0 1 1 1 0 TMEM9 Vps39_2 PF10367.4 gi|336476086|ref|YP_004615227.1| - 4.1 7.6 6.0 13 5.9 0.0 2.2 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 PAS_9 PF13426.1 gi|336476087|ref|YP_004615228.1| - 4.1e-31 107.4 3.0 4e-08 33.5 0.0 5.3 4 1 1 5 5 5 4 PAS domain HisKA_2 PF07568.7 gi|336476087|ref|YP_004615228.1| - 9.6e-28 95.8 9.0 2.6e-27 94.4 4.6 2.8 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.5 gi|336476087|ref|YP_004615228.1| - 1.1e-27 96.2 0.0 2.3e-12 46.8 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|336476087|ref|YP_004615228.1| - 5.4e-25 87.3 0.2 6.8e-09 35.5 0.0 4.4 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|336476087|ref|YP_004615228.1| - 5e-15 55.3 0.6 3.5e-12 46.2 0.1 3.6 4 0 0 4 4 4 1 PAS fold HATPase_c PF02518.21 gi|336476087|ref|YP_004615228.1| - 1.1e-10 41.1 0.2 2.7e-10 39.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|336476087|ref|YP_004615228.1| - 7.5e-09 35.7 0.0 1.6e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|336476087|ref|YP_004615228.1| - 1.3e-08 34.3 0.0 0.31 10.9 0.0 3.8 3 0 0 3 3 3 3 PAS domain HWE_HK PF07536.9 gi|336476087|ref|YP_004615228.1| - 1.3e-08 35.1 4.1 1.7e-08 34.7 0.5 2.7 3 0 0 3 3 3 1 HWE histidine kinase GAF_2 PF13185.1 gi|336476087|ref|YP_004615228.1| - 2.5e-08 34.5 0.0 4.3e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|336476087|ref|YP_004615228.1| - 7.9e-07 29.3 2.7 0.93 9.7 0.0 5.2 5 0 0 5 5 5 2 PAS domain GAF PF01590.21 gi|336476087|ref|YP_004615228.1| - 8.8e-06 25.9 0.0 2.4e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|336476087|ref|YP_004615228.1| - 0.0009 19.0 0.0 0.0019 17.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|336476087|ref|YP_004615228.1| - 0.0019 18.1 0.1 0.02 14.8 0.0 2.8 2 0 0 2 2 2 1 PAS domain Glug PF07581.7 gi|336476088|ref|YP_004615229.1| - 9.2e-65 210.6 222.8 0.00013 21.9 0.1 31.8 32 0 0 32 32 32 27 The GLUG motif Peptidase_M26_N PF05342.9 gi|336476088|ref|YP_004615229.1| - 2.8e-12 46.1 1.1 6.7e-06 25.2 0.1 2.9 2 0 0 2 2 2 2 M26 IgA1-specific Metallo-endopeptidase N-terminal region DNA_PPF PF02916.10 gi|336476088|ref|YP_004615229.1| - 0.49 10.4 2.6 3.8 7.6 0.4 2.9 2 0 0 2 2 2 0 DNA polymerase processivity factor Glyco_hydro_2 PF00703.16 gi|336476089|ref|YP_004615230.1| - 0.023 15.1 0.0 3.7 8.0 0.0 2.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 Big_3_4 PF13754.1 gi|336476089|ref|YP_004615230.1| - 0.048 13.9 0.5 0.15 12.4 0.3 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) tRNA-synt_1e PF01406.14 gi|336476090|ref|YP_004615231.1| - 7.2e-100 333.9 0.0 1.1e-99 333.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|336476090|ref|YP_004615231.1| - 7.6e-16 57.7 0.4 3.2e-07 29.3 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|336476090|ref|YP_004615231.1| - 8.3e-13 48.3 0.4 2e-12 47.1 0.3 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.13 gi|336476090|ref|YP_004615231.1| - 5.8e-12 44.9 0.1 1.1e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|336476090|ref|YP_004615231.1| - 4.2e-10 38.2 0.0 5.7e-07 27.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|336476090|ref|YP_004615231.1| - 8.3e-06 24.8 0.0 0.068 11.9 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (R) Cupin_8 PF13621.1 gi|336476090|ref|YP_004615231.1| - 0.037 13.5 0.1 0.076 12.5 0.1 1.4 1 0 0 1 1 1 0 Cupin-like domain PAS_9 PF13426.1 gi|336476091|ref|YP_004615232.1| - 3.8e-37 126.8 0.5 2.2e-09 37.6 0.0 5.8 6 0 0 6 6 6 4 PAS domain PAS_3 PF08447.6 gi|336476091|ref|YP_004615232.1| - 1e-35 121.6 0.2 6.5e-13 48.5 0.2 5.0 5 0 0 5 5 5 3 PAS fold HisKA_2 PF07568.7 gi|336476091|ref|YP_004615232.1| - 1.2e-30 105.1 4.3 8.4e-30 102.4 1.5 2.6 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.5 gi|336476091|ref|YP_004615232.1| - 1.5e-24 86.1 0.0 6.4e-06 26.1 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|336476091|ref|YP_004615232.1| - 2e-19 69.4 0.1 6.5e-08 32.3 0.0 4.8 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|336476091|ref|YP_004615232.1| - 4.3e-16 58.1 0.0 2.2e-08 33.6 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|336476091|ref|YP_004615232.1| - 8.3e-14 51.2 0.0 2e-13 50.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336476091|ref|YP_004615232.1| - 2.2e-07 30.6 0.0 4.3e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|336476091|ref|YP_004615232.1| - 1e-06 29.0 1.0 3.1e-06 27.5 0.2 2.2 2 0 0 2 2 2 1 HWE histidine kinase PAS_11 PF14598.1 gi|336476091|ref|YP_004615232.1| - 3.9e-06 26.7 0.4 0.87 9.5 0.0 4.0 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|336476091|ref|YP_004615232.1| - 0.03 14.3 0.0 14 5.7 0.0 3.6 3 0 0 3 3 3 0 PAS fold DUF4646 PF15496.1 gi|336476091|ref|YP_004615232.1| - 0.036 14.1 0.0 0.2 11.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4646) AAA PF00004.24 gi|336476092|ref|YP_004615233.1| - 3.6e-97 321.6 0.0 1.7e-48 164.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|336476092|ref|YP_004615233.1| - 1e-24 86.2 0.8 6.7e-24 83.6 0.2 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|336476092|ref|YP_004615233.1| - 1.5e-15 57.5 0.0 1e-08 35.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|336476092|ref|YP_004615233.1| - 2e-15 56.1 0.7 1.1e-14 53.8 0.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|336476092|ref|YP_004615233.1| - 6.3e-15 55.4 0.5 2.7e-05 24.2 0.1 4.6 3 2 0 3 3 2 2 AAA domain RuvB_N PF05496.7 gi|336476092|ref|YP_004615233.1| - 1.9e-14 53.2 0.0 1.6e-06 27.3 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|336476092|ref|YP_004615233.1| - 4.9e-13 49.4 0.0 1e-05 25.5 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|336476092|ref|YP_004615233.1| - 9.6e-13 48.2 0.0 1.5e-06 28.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|336476092|ref|YP_004615233.1| - 2.6e-12 47.6 0.1 0.00015 22.5 0.0 3.3 2 2 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|336476092|ref|YP_004615233.1| - 6e-12 45.0 0.0 2.1e-05 23.6 0.0 3.0 3 0 0 3 3 2 2 Zeta toxin AAA_14 PF13173.1 gi|336476092|ref|YP_004615233.1| - 1.3e-11 44.4 0.0 2.1e-05 24.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|336476092|ref|YP_004615233.1| - 2.5e-11 43.4 2.6 0.00059 19.5 0.0 4.5 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|336476092|ref|YP_004615233.1| - 4.1e-10 38.9 0.3 0.00075 18.3 0.0 2.7 3 0 0 3 3 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|336476092|ref|YP_004615233.1| - 6.8e-10 38.6 0.2 0.001 18.4 0.0 3.4 4 0 0 4 4 3 2 IstB-like ATP binding protein NACHT PF05729.7 gi|336476092|ref|YP_004615233.1| - 1.3e-09 37.9 0.2 0.041 13.5 0.0 4.2 3 1 1 4 4 4 2 NACHT domain AAA_19 PF13245.1 gi|336476092|ref|YP_004615233.1| - 3.2e-09 36.4 0.7 0.0031 17.2 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_18 PF13238.1 gi|336476092|ref|YP_004615233.1| - 8.6e-09 35.7 0.0 0.0033 17.7 0.0 3.1 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|336476092|ref|YP_004615233.1| - 3e-08 34.0 0.0 0.016 15.5 0.0 2.8 2 0 0 2 2 2 2 ABC transporter Mg_chelatase PF01078.16 gi|336476092|ref|YP_004615233.1| - 3.7e-08 32.7 1.0 0.0043 16.2 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|336476092|ref|YP_004615233.1| - 1.6e-07 31.4 0.0 0.0093 15.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|336476092|ref|YP_004615233.1| - 1.8e-07 31.2 0.0 0.03 14.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|336476092|ref|YP_004615233.1| - 1.8e-07 30.7 7.6 0.023 14.1 0.4 4.2 2 2 1 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|336476092|ref|YP_004615233.1| - 2.3e-07 30.4 0.1 0.046 13.1 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|336476092|ref|YP_004615233.1| - 2.7e-07 30.5 0.1 0.13 11.9 0.0 3.9 2 2 1 3 3 3 3 Archaeal ATPase Bac_DnaA PF00308.13 gi|336476092|ref|YP_004615233.1| - 1.7e-06 27.8 0.0 0.018 14.7 0.0 2.8 2 1 1 3 3 2 2 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|336476092|ref|YP_004615233.1| - 1.8e-06 27.0 1.3 0.015 14.1 0.0 2.7 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 ResIII PF04851.10 gi|336476092|ref|YP_004615233.1| - 2.8e-06 27.3 0.0 0.0076 16.0 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.1 gi|336476092|ref|YP_004615233.1| - 2.9e-06 27.3 0.0 0.082 12.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|336476092|ref|YP_004615233.1| - 3e-06 27.0 0.0 0.01 15.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|336476092|ref|YP_004615233.1| - 5.9e-06 25.9 0.1 0.12 11.9 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|336476092|ref|YP_004615233.1| - 8.4e-06 24.8 0.0 0.1 11.4 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain KaiC PF06745.8 gi|336476092|ref|YP_004615233.1| - 1.9e-05 23.8 1.1 1.1 8.3 0.0 3.9 3 1 1 4 4 3 2 KaiC DUF815 PF05673.8 gi|336476092|ref|YP_004615233.1| - 3.2e-05 22.9 0.0 0.078 11.8 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_11 PF13086.1 gi|336476092|ref|YP_004615233.1| - 5.2e-05 22.9 0.1 0.27 10.7 0.0 2.5 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.4 gi|336476092|ref|YP_004615233.1| - 5.8e-05 22.2 0.0 0.098 11.6 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|336476092|ref|YP_004615233.1| - 6.7e-05 22.2 0.1 0.42 9.7 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein NTPase_1 PF03266.10 gi|336476092|ref|YP_004615233.1| - 0.00016 21.4 1.3 5.2 6.7 0.0 4.4 3 1 0 4 4 4 0 NTPase Guanylate_kin PF00625.16 gi|336476092|ref|YP_004615233.1| - 0.00017 21.0 0.6 12 5.2 0.0 4.4 2 2 2 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|336476092|ref|YP_004615233.1| - 0.00021 20.2 0.0 0.6 8.8 0.0 2.7 3 0 0 3 3 2 2 AFG1-like ATPase UPF0079 PF02367.12 gi|336476092|ref|YP_004615233.1| - 0.0003 20.4 0.0 0.81 9.3 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|336476092|ref|YP_004615233.1| - 0.00051 19.6 0.0 0.36 10.2 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|336476092|ref|YP_004615233.1| - 0.00075 19.1 0.0 1.3 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|336476092|ref|YP_004615233.1| - 0.00077 19.0 0.0 0.62 9.5 0.0 2.6 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.9 gi|336476092|ref|YP_004615233.1| - 0.00091 18.3 0.3 0.7 8.8 0.0 3.5 2 2 1 3 3 3 1 KAP family P-loop domain Vps4_C PF09336.5 gi|336476092|ref|YP_004615233.1| - 0.0011 18.7 0.1 0.62 9.9 0.0 3.4 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain T2SE PF00437.15 gi|336476092|ref|YP_004615233.1| - 0.0014 17.6 0.0 0.9 8.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein SKI PF01202.17 gi|336476092|ref|YP_004615233.1| - 0.0016 18.3 1.5 2.8 7.7 0.0 3.8 4 0 0 4 4 4 0 Shikimate kinase AAA_23 PF13476.1 gi|336476092|ref|YP_004615233.1| - 0.0022 18.3 0.1 1.3 9.2 0.0 3.0 3 0 0 3 3 2 1 AAA domain cobW PF02492.14 gi|336476092|ref|YP_004615233.1| - 0.01 15.2 0.1 3.9 6.8 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|336476092|ref|YP_004615233.1| - 0.011 15.3 0.0 6.3 6.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_10 PF12846.2 gi|336476092|ref|YP_004615233.1| - 0.022 14.2 0.1 3.2 7.1 0.0 2.8 2 1 0 2 2 2 0 AAA-like domain Torsin PF06309.6 gi|336476092|ref|YP_004615233.1| - 0.024 14.5 0.0 7.2 6.5 0.0 2.6 2 0 0 2 2 2 0 Torsin AAA_29 PF13555.1 gi|336476092|ref|YP_004615233.1| - 0.027 14.0 0.0 6.9 6.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|336476092|ref|YP_004615233.1| - 0.034 13.6 0.0 8.1 5.9 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KTI12 PF08433.5 gi|336476092|ref|YP_004615233.1| - 0.044 12.9 0.0 11 5.1 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|336476092|ref|YP_004615233.1| - 0.073 13.0 0.0 16 5.4 0.0 2.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase DAP3 PF10236.4 gi|336476092|ref|YP_004615233.1| - 0.083 11.8 0.0 4.7 6.0 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 IPT PF01745.11 gi|336476092|ref|YP_004615233.1| - 0.11 11.6 0.1 5.9 5.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase MS_channel PF00924.13 gi|336476093|ref|YP_004615234.1| - 4.8e-23 81.5 0.0 4.8e-23 81.5 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Wzy_C PF04932.10 gi|336476093|ref|YP_004615234.1| - 0.049 13.4 7.6 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 O-Antigen ligase MgtE PF01769.11 gi|336476093|ref|YP_004615234.1| - 3 8.1 9.8 2 8.6 2.5 2.2 1 1 1 2 2 2 0 Divalent cation transporter UPF0233 PF06781.7 gi|336476093|ref|YP_004615234.1| - 7.4 6.2 6.1 9.4 5.9 0.6 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) Spore_YtfJ PF09579.5 gi|336476095|ref|YP_004615236.1| - 8.8e-27 92.7 0.9 1.6e-26 91.9 0.6 1.4 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.3 gi|336476096|ref|YP_004615237.1| - 1.6e-12 47.0 0.5 4.3e-11 42.5 0.0 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF2953) 7TM_GPCR_Srv PF10323.4 gi|336476096|ref|YP_004615237.1| - 0.032 13.3 0.4 0.049 12.7 0.3 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srv TspO_MBR PF03073.10 gi|336476097|ref|YP_004615238.1| - 3e-52 176.0 17.2 3.4e-52 175.8 11.9 1.0 1 0 0 1 1 1 1 TspO/MBR family FMN_red PF03358.10 gi|336476098|ref|YP_004615239.1| - 1e-27 96.4 0.0 1.3e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336476098|ref|YP_004615239.1| - 1.2e-09 37.9 0.0 1.4e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|336476098|ref|YP_004615239.1| - 0.069 12.7 0.2 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) PDDEXK_1 PF12705.2 gi|336476099|ref|YP_004615240.1| - 3.3e-13 49.6 0.4 5.3e-13 48.9 0.2 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.16 gi|336476100|ref|YP_004615241.1| - 3.7e-51 174.3 0.0 1.2e-50 172.6 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|336476100|ref|YP_004615241.1| - 5.6e-29 101.6 0.0 3e-16 59.8 0.0 2.7 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|336476100|ref|YP_004615241.1| - 4.9e-13 48.6 0.0 1.1e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|336476100|ref|YP_004615241.1| - 2.8e-11 43.3 2.4 9.3e-11 41.5 0.2 2.7 3 1 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|336476100|ref|YP_004615241.1| - 3.2e-08 33.6 0.5 0.00097 19.2 0.0 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|336476100|ref|YP_004615241.1| - 9.4e-05 22.0 0.1 5.1 6.5 0.0 4.3 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|336476100|ref|YP_004615241.1| - 0.0095 15.5 0.0 0.057 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|336476100|ref|YP_004615241.1| - 0.015 14.8 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cas_Cas4 PF01930.12 gi|336476100|ref|YP_004615241.1| - 0.055 13.3 0.1 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF83 Peptidase_A8 PF01252.13 gi|336476101|ref|YP_004615242.1| - 0.33 10.5 4.0 1.9 8.0 3.3 1.9 2 1 0 2 2 2 0 Signal peptidase (SPase) II Ribosomal_L18_c PF14204.1 gi|336476101|ref|YP_004615242.1| - 1.1 9.8 4.4 7.9 7.1 0.1 3.1 2 1 1 3 3 3 0 Ribosomal L18 C-terminal region DUF4131 PF13567.1 gi|336476101|ref|YP_004615242.1| - 1.2 8.5 8.9 0.081 12.3 1.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1053 PF06327.9 gi|336476101|ref|YP_004615242.1| - 2.7 8.4 5.8 1.4 9.3 1.1 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1053) HSP20 PF00011.16 gi|336476102|ref|YP_004615243.1| - 0.00054 19.7 0.0 0.069 13.0 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|336476102|ref|YP_004615243.1| - 0.085 13.4 0.0 0.76 10.3 0.0 2.0 1 1 0 1 1 1 0 CS domain HSP20 PF00011.16 gi|336476103|ref|YP_004615244.1| - 9.1e-06 25.4 0.0 6.5e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|336476103|ref|YP_004615244.1| - 0.00019 21.8 0.0 0.00036 21.0 0.0 1.5 1 1 1 2 2 2 1 CS domain Rubrerythrin PF02915.12 gi|336476104|ref|YP_004615245.1| - 8.2e-09 35.9 0.6 9e-09 35.7 0.4 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|336476104|ref|YP_004615245.1| - 0.00056 19.8 0.1 0.00069 19.5 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Mn_catalase PF05067.7 gi|336476104|ref|YP_004615245.1| - 0.00091 18.0 0.7 0.0011 17.7 0.5 1.0 1 0 0 1 1 1 1 Manganese containing catalase DUF2383 PF09537.5 gi|336476104|ref|YP_004615245.1| - 0.0066 16.6 0.2 0.0084 16.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.8 gi|336476104|ref|YP_004615245.1| - 0.01 15.3 0.4 0.013 15.0 0.3 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Imm39 PF15600.1 gi|336476104|ref|YP_004615245.1| - 0.087 12.6 1.4 0.12 12.2 0.9 1.2 1 0 0 1 1 1 0 Immunity protein 39 DUF3231 PF11553.3 gi|336476104|ref|YP_004615245.1| - 0.088 12.3 0.6 0.1 12.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) TPR_7 PF13176.1 gi|336476104|ref|YP_004615245.1| - 0.14 12.0 0.1 0.31 10.9 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Ferritin PF00210.19 gi|336476104|ref|YP_004615245.1| - 0.33 10.7 3.0 0.41 10.4 2.1 1.1 1 0 0 1 1 1 0 Ferritin-like domain Rubrerythrin PF02915.12 gi|336476105|ref|YP_004615246.1| - 1.9e-08 34.7 2.1 2.1e-08 34.5 1.5 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|336476105|ref|YP_004615246.1| - 3.2e-06 27.3 1.2 3.7e-06 27.1 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.8 gi|336476105|ref|YP_004615246.1| - 0.0064 15.9 0.4 0.0074 15.7 0.3 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.7 gi|336476105|ref|YP_004615246.1| - 0.012 14.4 1.0 0.013 14.3 0.7 1.1 1 0 0 1 1 1 0 Manganese containing catalase Ferritin_2 PF13668.1 gi|336476105|ref|YP_004615246.1| - 0.013 15.4 0.1 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 Ferritin-like domain DUF2202 PF09968.4 gi|336476105|ref|YP_004615246.1| - 0.022 14.4 0.4 0.027 14.1 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) DUF892 PF05974.7 gi|336476105|ref|YP_004615246.1| - 0.073 12.8 3.3 0.08 12.7 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF892) SelR PF01641.13 gi|336476106|ref|YP_004615247.1| - 1.1e-53 180.1 0.1 1.3e-53 179.9 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|336476106|ref|YP_004615247.1| - 0.0019 18.2 0.2 0.0051 16.8 0.1 1.7 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|336476106|ref|YP_004615247.1| - 0.0022 17.6 0.5 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|336476106|ref|YP_004615247.1| - 0.014 15.2 0.5 0.047 13.5 0.4 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF678 PF05077.7 gi|336476106|ref|YP_004615247.1| - 0.029 14.3 0.2 6 6.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF678) HECT_2 PF09814.4 gi|336476106|ref|YP_004615247.1| - 0.053 12.2 0.7 0.26 9.9 0.1 1.9 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding HNH_5 PF14279.1 gi|336476106|ref|YP_004615247.1| - 0.071 13.1 0.4 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 HNH endonuclease RIG-I_C-RD PF11648.3 gi|336476106|ref|YP_004615247.1| - 0.083 12.7 0.1 2.8 7.8 0.0 2.1 2 0 0 2 2 2 0 C-terminal domain of RIG-I zf-ribbon_3 PF13248.1 gi|336476106|ref|YP_004615247.1| - 0.092 11.9 2.8 0.71 9.1 0.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain ATP-gua_PtransN PF02807.10 gi|336476106|ref|YP_004615247.1| - 0.13 12.3 0.1 0.3 11.2 0.0 1.7 1 1 0 1 1 1 0 ATP:guanido phosphotransferase, N-terminal domain A2L_zn_ribbon PF08792.5 gi|336476106|ref|YP_004615247.1| - 0.14 11.6 2.0 0.7 9.4 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336476106|ref|YP_004615247.1| - 0.14 11.4 3.2 5.4 6.4 0.0 2.7 2 1 1 3 3 3 0 TFIIB zinc-binding DUF2318 PF10080.4 gi|336476106|ref|YP_004615247.1| - 0.2 11.4 0.8 4.1 7.2 0.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) Zn_Tnp_IS1595 PF12760.2 gi|336476106|ref|YP_004615247.1| - 0.27 11.0 2.8 8.1 6.3 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|336476106|ref|YP_004615247.1| - 5 6.8 7.1 2.3 7.9 0.1 2.6 2 1 0 2 2 2 0 HIT zinc finger DUF2769 PF10967.3 gi|336476107|ref|YP_004615248.1| - 2.4e-14 53.3 11.1 2.4e-14 53.3 7.7 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Cys_rich_CWC PF14375.1 gi|336476107|ref|YP_004615248.1| - 0.0037 17.1 4.9 0.38 10.7 0.3 2.2 2 0 0 2 2 2 2 Cysteine-rich CWC RRN7 PF11781.3 gi|336476107|ref|YP_004615248.1| - 0.22 11.0 16.9 0.17 11.4 1.3 3.2 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Paramyx-P PF13008.2 gi|336476107|ref|YP_004615248.1| - 4.4 6.5 10.5 0.7 9.1 1.4 2.3 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Viral_Beta_CD PF04530.7 gi|336476107|ref|YP_004615248.1| - 6.9 6.8 6.2 8.9 6.5 0.6 2.2 2 0 0 2 2 2 0 Viral Beta C/D like family Pentapeptide PF00805.17 gi|336476109|ref|YP_004615250.1| - 1.3e-18 65.7 3.7 5.9e-09 34.9 0.1 2.4 2 0 0 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|336476109|ref|YP_004615250.1| - 1.9e-10 40.4 0.2 2.9e-10 39.7 0.2 1.2 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|336476109|ref|YP_004615250.1| - 2.6e-09 36.7 1.9 0.00049 19.9 0.6 2.5 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) PspC PF04024.7 gi|336476110|ref|YP_004615251.1| - 4.8e-25 86.7 0.4 4.8e-25 86.7 0.3 2.2 2 0 0 2 2 2 1 PspC domain DUF2370 PF10176.4 gi|336476110|ref|YP_004615251.1| - 0.00089 18.6 0.1 0.0014 17.9 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2370) DUF1510 PF07423.6 gi|336476110|ref|YP_004615251.1| - 0.0031 16.9 0.2 0.0046 16.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) Zip PF02535.17 gi|336476110|ref|YP_004615251.1| - 2 7.3 4.9 8.5 5.2 0.0 2.3 1 1 1 2 2 2 0 ZIP Zinc transporter DUF318 PF03773.8 gi|336476111|ref|YP_004615252.1| - 3e-53 180.8 10.9 4.5e-53 180.2 7.5 1.2 1 0 0 1 1 1 1 Predicted permease ST7 PF04184.7 gi|336476111|ref|YP_004615252.1| - 0.089 11.0 0.2 0.13 10.5 0.1 1.1 1 0 0 1 1 1 0 ST7 protein HTH_5 PF01022.15 gi|336476112|ref|YP_004615253.1| - 1.3e-17 63.1 0.3 1.9e-17 62.6 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336476112|ref|YP_004615253.1| - 5e-10 39.0 0.0 1.4e-09 37.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|336476112|ref|YP_004615253.1| - 0.00096 19.1 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain ArsR PF09824.4 gi|336476112|ref|YP_004615253.1| - 0.0022 17.3 0.1 0.0065 15.8 0.0 1.7 2 0 0 2 2 2 1 ArsR transcriptional regulator Arg_repressor PF01316.16 gi|336476112|ref|YP_004615253.1| - 0.0051 16.3 0.0 0.0089 15.5 0.0 1.5 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain PaaX PF07848.7 gi|336476112|ref|YP_004615253.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.5 2 0 0 2 2 2 0 PaaX-like protein TrmB PF01978.14 gi|336476112|ref|YP_004615253.1| - 0.062 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336476112|ref|YP_004615253.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 MarR family CbiQ PF02361.11 gi|336476113|ref|YP_004615254.1| - 2.2e-40 138.5 7.5 2.8e-40 138.2 5.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|336476114|ref|YP_004615255.1| - 6.4e-31 107.4 0.0 1.1e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476114|ref|YP_004615255.1| - 4.6e-13 49.7 0.2 1e-09 38.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336476114|ref|YP_004615255.1| - 2.7e-07 30.0 0.3 1.1e-06 27.9 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|336476114|ref|YP_004615255.1| - 4.8e-06 26.2 0.5 0.047 13.1 0.3 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|336476114|ref|YP_004615255.1| - 1.3e-05 24.6 0.1 2.7e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336476114|ref|YP_004615255.1| - 4.3e-05 22.7 0.0 6.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|336476114|ref|YP_004615255.1| - 0.00034 20.4 0.0 0.0023 17.7 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|336476114|ref|YP_004615255.1| - 0.0018 18.6 0.9 0.0034 17.7 0.7 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336476114|ref|YP_004615255.1| - 0.0035 17.3 0.1 0.0072 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|336476114|ref|YP_004615255.1| - 0.01 15.4 0.0 0.028 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336476114|ref|YP_004615255.1| - 0.019 15.1 0.1 0.054 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|336476114|ref|YP_004615255.1| - 0.027 14.1 0.1 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|336476114|ref|YP_004615255.1| - 0.038 14.4 0.1 0.089 13.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein DUF87 PF01935.12 gi|336476114|ref|YP_004615255.1| - 0.045 13.5 0.2 0.078 12.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 KaiC PF06745.8 gi|336476114|ref|YP_004615255.1| - 0.046 12.8 1.7 1 8.3 1.2 2.4 1 1 0 1 1 1 0 KaiC PRK PF00485.13 gi|336476114|ref|YP_004615255.1| - 0.05 13.1 0.1 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|336476114|ref|YP_004615255.1| - 0.051 13.2 0.2 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|336476114|ref|YP_004615255.1| - 0.083 12.2 0.0 0.3 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|336476114|ref|YP_004615255.1| - 0.084 12.8 0.3 0.28 11.1 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|336476114|ref|YP_004615255.1| - 0.087 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|336476115|ref|YP_004615256.1| - 1.7e-31 109.3 0.0 2.6e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|336476115|ref|YP_004615256.1| - 1.3e-08 34.3 0.9 1.6e-07 30.8 0.6 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336476115|ref|YP_004615256.1| - 1.9e-06 28.0 0.1 0.0061 16.5 0.3 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336476115|ref|YP_004615256.1| - 2.5e-05 23.6 0.1 4.6e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|336476115|ref|YP_004615256.1| - 0.00073 19.6 0.2 0.0098 16.0 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|336476115|ref|YP_004615256.1| - 0.0012 18.5 0.1 0.017 14.8 0.0 2.5 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|336476115|ref|YP_004615256.1| - 0.0013 18.6 0.0 0.66 9.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|336476115|ref|YP_004615256.1| - 0.0017 17.8 1.1 0.69 9.2 0.2 2.1 1 1 0 2 2 2 2 AAA-like domain DUF258 PF03193.11 gi|336476115|ref|YP_004615256.1| - 0.002 17.3 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336476115|ref|YP_004615256.1| - 0.0029 17.6 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|336476115|ref|YP_004615256.1| - 0.0059 16.9 0.0 0.008 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336476115|ref|YP_004615256.1| - 0.0066 15.8 0.0 0.1 12.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|336476115|ref|YP_004615256.1| - 0.0086 16.2 0.2 1.1 9.3 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|336476115|ref|YP_004615256.1| - 0.0086 15.1 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.17 gi|336476115|ref|YP_004615256.1| - 0.021 14.9 0.0 0.19 11.8 0.0 2.2 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|336476115|ref|YP_004615256.1| - 0.026 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|336476115|ref|YP_004615256.1| - 0.029 14.2 0.4 0.064 13.1 0.2 1.7 2 1 0 2 2 1 0 AAA domain Miro PF08477.8 gi|336476115|ref|YP_004615256.1| - 0.035 14.5 0.0 0.072 13.5 0.0 1.6 1 1 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|336476115|ref|YP_004615256.1| - 0.046 13.6 0.4 0.098 12.6 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|336476115|ref|YP_004615256.1| - 0.054 13.1 0.1 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|336476115|ref|YP_004615256.1| - 0.056 12.2 0.0 0.1 11.3 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|336476115|ref|YP_004615256.1| - 0.056 13.7 0.1 0.61 10.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|336476115|ref|YP_004615256.1| - 0.065 12.0 0.1 0.14 11.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.4 gi|336476115|ref|YP_004615256.1| - 0.067 12.6 0.0 0.17 11.3 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|336476115|ref|YP_004615256.1| - 0.081 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|336476115|ref|YP_004615256.1| - 0.092 12.4 0.1 0.19 11.4 0.1 1.8 1 1 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|336476115|ref|YP_004615256.1| - 0.11 11.5 0.1 0.31 10.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin Rad17 PF03215.10 gi|336476115|ref|YP_004615256.1| - 0.12 11.0 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NTPase_1 PF03266.10 gi|336476115|ref|YP_004615256.1| - 0.14 11.8 0.3 0.91 9.2 0.0 2.1 2 0 0 2 2 2 0 NTPase BioY PF02632.9 gi|336476116|ref|YP_004615257.1| - 2.2e-47 160.4 18.3 3.6e-47 159.7 12.7 1.3 1 0 0 1 1 1 1 BioY family ECF-ribofla_trS PF07155.7 gi|336476116|ref|YP_004615257.1| - 0.00011 21.9 2.4 0.00011 21.9 1.7 2.5 2 1 0 2 2 2 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|336476116|ref|YP_004615257.1| - 0.00014 21.8 24.3 0.00019 21.3 16.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) DUF2269 PF10027.4 gi|336476116|ref|YP_004615257.1| - 0.039 13.7 0.8 0.039 13.7 0.6 2.2 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) CbtB PF09489.5 gi|336476116|ref|YP_004615257.1| - 0.16 11.8 2.4 0.93 9.4 0.1 3.1 2 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtB) Cpn60_TCP1 PF00118.19 gi|336476117|ref|YP_004615258.1| - 5e-169 562.9 17.3 6.2e-169 562.6 12.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF59 PF01883.14 gi|336476117|ref|YP_004615258.1| - 0.0093 15.9 0.9 3.3 7.7 0.0 4.0 3 0 0 3 3 3 1 Domain of unknown function DUF59 Rubrerythrin PF02915.12 gi|336476119|ref|YP_004615260.1| - 1.8e-33 115.7 0.6 2.3e-33 115.4 0.4 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|336476119|ref|YP_004615260.1| - 1.3e-08 34.6 0.0 7e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF892 PF05974.7 gi|336476119|ref|YP_004615260.1| - 0.00075 19.3 0.6 0.078 12.7 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF892) HypA PF01155.14 gi|336476119|ref|YP_004615260.1| - 0.0013 18.3 1.5 0.0026 17.4 0.6 1.8 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family DUF2202 PF09968.4 gi|336476119|ref|YP_004615260.1| - 0.054 13.1 1.0 0.51 10.0 0.1 2.2 1 1 0 2 2 2 0 Uncharacterized protein domain (DUF2202) SDP_N PF12278.3 gi|336476119|ref|YP_004615260.1| - 0.059 13.0 0.1 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 Sex determination protein N terminal DUF3279 PF11682.3 gi|336476119|ref|YP_004615260.1| - 0.062 12.8 1.8 0.098 12.2 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) COQ7 PF03232.8 gi|336476119|ref|YP_004615260.1| - 0.22 10.9 1.4 14 5.1 0.1 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 tRNA-synt_1g PF09334.6 gi|336476119|ref|YP_004615260.1| - 0.43 9.1 4.2 0.17 10.5 1.3 1.4 2 0 0 2 2 2 0 tRNA synthetases class I (M) DUF4379 PF14311.1 gi|336476119|ref|YP_004615260.1| - 0.99 9.2 6.9 6.9 6.5 4.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) RNA_POL_M_15KD PF02150.11 gi|336476119|ref|YP_004615260.1| - 2.5 7.8 5.0 0.64 9.7 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2296 PF10058.4 gi|336476119|ref|YP_004615260.1| - 2.6 7.8 5.5 0.87 9.3 0.1 2.7 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) MMR_HSR1_C PF08438.5 gi|336476120|ref|YP_004615261.1| - 1.9e-31 108.5 0.0 4.5e-31 107.3 0.0 1.6 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|336476120|ref|YP_004615261.1| - 7.8e-16 58.0 0.0 2e-15 56.7 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|336476120|ref|YP_004615261.1| - 2.6e-14 52.7 0.1 8.9e-14 51.0 0.0 1.9 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|336476120|ref|YP_004615261.1| - 3.8e-09 35.9 0.3 1.6e-07 30.6 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B Prenyltransf PF01255.14 gi|336476121|ref|YP_004615262.1| - 2.7e-32 111.7 0.1 1e-26 93.4 0.0 2.0 1 1 0 2 2 2 2 Putative undecaprenyl diphosphate synthase Acetyltransf_1 PF00583.19 gi|336476122|ref|YP_004615263.1| - 2.7e-17 62.5 0.3 3.5e-17 62.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336476122|ref|YP_004615263.1| - 3.6e-13 49.4 0.3 5.2e-13 48.9 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336476122|ref|YP_004615263.1| - 1.7e-09 37.7 0.0 2.1e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336476122|ref|YP_004615263.1| - 1.6e-08 34.6 0.2 4.4e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336476122|ref|YP_004615263.1| - 1.3e-07 31.4 0.1 9.5e-07 28.7 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336476122|ref|YP_004615263.1| - 1.4e-06 27.9 0.1 1.8e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|336476122|ref|YP_004615263.1| - 0.00018 21.3 0.1 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336476122|ref|YP_004615263.1| - 0.00029 20.6 0.1 0.00069 19.4 0.0 1.7 2 1 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|336476122|ref|YP_004615263.1| - 0.0025 17.7 0.1 0.0041 17.0 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.13 gi|336476122|ref|YP_004615263.1| - 0.043 13.0 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family GNAT_acetyltr_2 PF13718.1 gi|336476122|ref|YP_004615263.1| - 0.044 13.1 0.1 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_3 PF13302.1 gi|336476122|ref|YP_004615263.1| - 0.072 13.2 0.0 0.082 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|336476122|ref|YP_004615263.1| - 0.072 12.8 0.1 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase TF_Zn_Ribbon PF08271.7 gi|336476123|ref|YP_004615264.1| - 0.00066 18.9 0.1 0.0027 16.9 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding DUF1922 PF09082.5 gi|336476123|ref|YP_004615264.1| - 0.00098 19.1 0.9 0.0015 18.5 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zf-TFIIB PF13453.1 gi|336476123|ref|YP_004615264.1| - 0.0071 15.5 3.5 0.02 14.1 2.4 1.8 1 0 0 1 1 1 1 Transcription factor zinc-finger DUF2296 PF10058.4 gi|336476123|ref|YP_004615264.1| - 0.0096 15.6 1.0 0.032 13.9 0.7 1.9 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) Chordopox_RPO7 PF05864.7 gi|336476123|ref|YP_004615264.1| - 0.0096 15.9 0.6 0.023 14.8 0.4 1.6 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zf-FPG_IleRS PF06827.9 gi|336476123|ref|YP_004615264.1| - 0.02 14.4 3.3 0.063 12.9 2.5 1.6 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_S27e PF01667.12 gi|336476123|ref|YP_004615264.1| - 0.06 12.8 2.0 0.11 12.0 1.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|336476123|ref|YP_004615264.1| - 0.092 12.7 4.9 2.1 8.3 3.8 2.4 1 1 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|336476123|ref|YP_004615264.1| - 0.2 11.6 4.7 0.37 10.7 1.1 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|336476123|ref|YP_004615264.1| - 0.3 10.9 4.2 0.66 9.8 2.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|336476123|ref|YP_004615264.1| - 0.36 10.6 5.4 1.3 8.8 3.9 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336476123|ref|YP_004615264.1| - 1.2 8.7 5.3 3.3 7.3 3.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336476123|ref|YP_004615264.1| - 3.5 7.3 6.1 9.8 5.9 4.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain AAA PF00004.24 gi|336476124|ref|YP_004615265.1| - 1.5e-37 128.7 0.1 5e-37 127.0 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|336476124|ref|YP_004615265.1| - 6.3e-08 33.4 0.4 2.4e-07 31.6 0.0 2.3 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|336476124|ref|YP_004615265.1| - 6.4e-07 29.1 0.3 4.8e-06 26.3 0.1 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|336476124|ref|YP_004615265.1| - 1.8e-06 27.8 0.0 5.1e-06 26.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|336476124|ref|YP_004615265.1| - 7.1e-05 23.1 0.1 0.00026 21.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|336476124|ref|YP_004615265.1| - 0.0003 20.9 0.3 0.021 14.9 0.2 2.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336476124|ref|YP_004615265.1| - 0.00032 20.7 0.0 0.00067 19.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|336476124|ref|YP_004615265.1| - 0.00045 19.2 0.0 0.00082 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|336476124|ref|YP_004615265.1| - 0.00082 19.4 2.0 0.051 13.5 0.0 2.8 3 1 0 4 4 3 1 AAA ATPase domain AAA_2 PF07724.9 gi|336476124|ref|YP_004615265.1| - 0.0011 18.9 0.0 0.0044 16.9 0.0 2.1 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|336476124|ref|YP_004615265.1| - 0.0011 18.0 0.0 0.0026 16.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|336476124|ref|YP_004615265.1| - 0.0012 18.0 0.1 0.008 15.2 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.8 gi|336476124|ref|YP_004615265.1| - 0.0015 17.3 0.1 0.0038 15.9 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus AAA_25 PF13481.1 gi|336476124|ref|YP_004615265.1| - 0.0034 16.7 0.1 0.42 9.9 0.0 2.4 1 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|336476124|ref|YP_004615265.1| - 0.0068 16.1 1.7 0.05 13.2 0.2 2.7 2 1 1 3 3 3 1 Archaeal ATPase AAA_11 PF13086.1 gi|336476124|ref|YP_004615265.1| - 0.008 15.7 0.1 0.34 10.4 0.1 2.3 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|336476124|ref|YP_004615265.1| - 0.014 15.2 0.0 0.038 13.8 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase AAA_14 PF13173.1 gi|336476124|ref|YP_004615265.1| - 0.015 15.1 0.0 0.041 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|336476124|ref|YP_004615265.1| - 0.018 14.2 0.1 0.044 12.9 0.0 1.6 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|336476124|ref|YP_004615265.1| - 0.019 14.9 0.0 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.7 gi|336476124|ref|YP_004615265.1| - 0.023 14.3 0.3 3.9 7.0 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|336476124|ref|YP_004615265.1| - 0.024 14.5 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|336476124|ref|YP_004615265.1| - 0.026 14.2 0.5 0.086 12.6 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain Cytidylate_kin2 PF13189.1 gi|336476124|ref|YP_004615265.1| - 0.03 14.2 0.0 0.067 13.0 0.0 1.6 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA_24 PF13479.1 gi|336476124|ref|YP_004615265.1| - 0.031 13.8 0.1 0.059 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336476124|ref|YP_004615265.1| - 0.036 13.4 0.0 0.063 12.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DEAD PF00270.24 gi|336476124|ref|YP_004615265.1| - 0.04 13.4 0.1 1.9 7.9 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_3 PF07726.6 gi|336476124|ref|YP_004615265.1| - 0.067 12.8 0.0 0.14 11.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336476124|ref|YP_004615265.1| - 0.083 12.3 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|336476124|ref|YP_004615265.1| - 0.15 11.4 0.6 19 4.6 0.0 2.7 2 1 1 3 3 3 0 FtsK/SpoIIIE family Lactamase_B_2 PF12706.2 gi|336476125|ref|YP_004615266.1| - 2.2e-24 86.0 1.4 2.7e-24 85.8 0.9 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336476125|ref|YP_004615266.1| - 1e-15 57.9 0.6 1.2e-15 57.6 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|336476125|ref|YP_004615266.1| - 4.8e-06 26.3 0.2 8.6e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Bac_luciferase PF00296.15 gi|336476126|ref|YP_004615267.1| - 6.2e-66 222.6 0.0 6.9e-66 222.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1522 PF07482.6 gi|336476126|ref|YP_004615267.1| - 0.0055 16.8 0.7 0.041 14.0 0.4 2.2 2 0 0 2 2 2 1 Domain of Unknown Function (DUF1522) FrhB_FdhB_C PF04432.8 gi|336476127|ref|YP_004615268.1| - 2.1e-40 137.7 0.0 2.1e-40 137.7 0.0 1.7 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|336476127|ref|YP_004615268.1| - 1.7e-17 63.0 0.0 3.3e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|336476127|ref|YP_004615268.1| - 2.5e-07 30.0 21.0 1.2e-05 24.6 4.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476127|ref|YP_004615268.1| - 4.7e-07 30.0 13.6 4.7e-07 30.0 9.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476127|ref|YP_004615268.1| - 1.1e-06 28.8 11.9 1.1e-06 28.8 8.3 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476127|ref|YP_004615268.1| - 2.9e-06 26.9 11.7 2.9e-06 26.9 8.1 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336476127|ref|YP_004615268.1| - 1.9e-05 24.6 11.3 1.9e-05 24.6 7.8 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476127|ref|YP_004615268.1| - 0.00012 22.3 8.8 0.00049 20.4 6.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336476127|ref|YP_004615268.1| - 0.0011 19.5 9.0 0.061 13.8 1.6 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|336476127|ref|YP_004615268.1| - 0.0019 18.0 5.4 0.0019 18.0 3.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336476127|ref|YP_004615268.1| - 0.0025 18.0 3.2 0.0025 18.0 2.2 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476127|ref|YP_004615268.1| - 0.0026 18.4 16.2 0.01 16.5 9.1 2.8 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|336476127|ref|YP_004615268.1| - 0.0035 17.1 14.7 0.0035 17.1 10.2 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476127|ref|YP_004615268.1| - 0.007 16.2 5.5 0.007 16.2 3.8 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336476127|ref|YP_004615268.1| - 0.017 15.4 10.1 1.7 9.0 3.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain CTP_transf_2 PF01467.21 gi|336476128|ref|YP_004615269.1| - 3.2e-18 66.2 0.0 4.4e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|336476128|ref|YP_004615269.1| - 0.02 14.5 0.1 0.037 13.6 0.1 1.4 1 0 0 1 1 1 0 FAD synthetase Citrate_ly_lig PF08218.6 gi|336476128|ref|YP_004615269.1| - 0.082 12.3 0.0 0.16 11.4 0.0 1.7 1 1 0 1 1 1 0 Citrate lyase ligase C-terminal domain HIGH_NTase1 PF05636.6 gi|336476128|ref|YP_004615269.1| - 0.087 11.8 0.0 5.5 5.9 0.0 2.1 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Usp PF00582.21 gi|336476129|ref|YP_004615270.1| - 9.1e-48 162.0 0.3 1.5e-23 83.5 0.0 2.0 2 0 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.13 gi|336476129|ref|YP_004615270.1| - 0.0076 16.0 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 1 DNA photolyase Ribul_P_3_epim PF00834.14 gi|336476129|ref|YP_004615270.1| - 0.013 14.5 0.5 0.051 12.6 0.1 2.1 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family SBF PF01758.11 gi|336476130|ref|YP_004615271.1| - 1.1e-40 139.0 27.7 1.3e-40 138.7 14.0 2.4 2 0 0 2 2 2 2 Sodium Bile acid symporter family AAA_18 PF13238.1 gi|336476131|ref|YP_004615272.1| - 2.2e-23 82.9 1.0 2.6e-23 82.7 0.2 1.4 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336476131|ref|YP_004615272.1| - 3.8e-15 56.7 0.3 1.2e-14 55.2 0.0 1.7 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|336476131|ref|YP_004615272.1| - 1.5e-08 34.6 0.4 5e-08 32.9 0.3 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|336476131|ref|YP_004615272.1| - 3.3e-05 23.8 0.0 0.056 13.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain CoaE PF01121.15 gi|336476131|ref|YP_004615272.1| - 9.3e-05 21.9 0.6 0.011 15.1 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase ADK PF00406.17 gi|336476131|ref|YP_004615272.1| - 0.0028 17.5 0.6 0.42 10.4 0.4 2.6 1 1 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|336476131|ref|YP_004615272.1| - 0.005 16.8 3.2 0.0088 16.0 1.0 2.0 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|336476131|ref|YP_004615272.1| - 0.0077 16.4 0.7 0.019 15.1 0.2 1.9 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|336476131|ref|YP_004615272.1| - 0.017 14.8 0.4 0.035 13.8 0.3 1.5 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|336476131|ref|YP_004615272.1| - 0.035 12.8 0.9 0.19 10.4 0.6 2.0 2 0 0 2 2 2 0 ArgK protein PRK PF00485.13 gi|336476131|ref|YP_004615272.1| - 0.046 13.2 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family dNK PF01712.14 gi|336476131|ref|YP_004615272.1| - 0.053 13.4 0.6 0.092 12.6 0.4 1.5 1 1 0 1 1 1 0 Deoxynucleoside kinase AAA_5 PF07728.9 gi|336476131|ref|YP_004615272.1| - 0.077 12.7 0.1 0.19 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|336476131|ref|YP_004615272.1| - 0.084 12.0 0.2 0.16 11.1 0.0 1.6 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_11 PF13086.1 gi|336476131|ref|YP_004615272.1| - 0.087 12.3 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|336476131|ref|YP_004615272.1| - 0.28 10.9 1.8 0.32 10.6 0.5 1.7 2 0 0 2 2 2 0 NTPase KaiC PF06745.8 gi|336476131|ref|YP_004615272.1| - 4.8 6.2 8.6 4.9 6.1 1.7 2.8 1 1 1 3 3 3 0 KaiC GATase PF00117.23 gi|336476132|ref|YP_004615273.1| - 4.5e-50 169.7 0.0 5e-50 169.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336476132|ref|YP_004615273.1| - 1.1e-16 60.9 0.1 2.4e-16 59.8 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|336476132|ref|YP_004615273.1| - 0.011 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|336476132|ref|YP_004615273.1| - 0.07 12.5 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Chorismate_bind PF00425.13 gi|336476133|ref|YP_004615274.1| - 1.4e-93 312.9 0.0 8.3e-91 303.8 0.0 2.3 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|336476133|ref|YP_004615274.1| - 3.7e-29 101.5 0.1 3.4e-28 98.3 0.0 2.4 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|336476134|ref|YP_004615275.1| - 2.7e-36 124.9 0.2 3.5e-36 124.6 0.2 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|336476134|ref|YP_004615275.1| - 0.0023 17.0 0.3 0.059 12.4 0.0 2.4 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI Glycos_transf_3 PF00591.16 gi|336476135|ref|YP_004615276.1| - 6e-96 320.7 2.3 7.6e-96 320.3 1.6 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|336476135|ref|YP_004615276.1| - 2.4e-19 68.6 1.5 4.8e-19 67.7 0.3 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase_3 PF07685.9 gi|336476136|ref|YP_004615277.1| - 8.4e-41 139.1 0.2 1.5e-40 138.4 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|336476136|ref|YP_004615277.1| - 8.4e-27 93.8 0.0 1.4e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|336476136|ref|YP_004615277.1| - 1.1e-18 67.5 0.0 2.7e-18 66.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain SNO PF01174.14 gi|336476136|ref|YP_004615277.1| - 0.0014 18.3 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|336476136|ref|YP_004615277.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Methyltransf_18 PF12847.2 gi|336476137|ref|YP_004615278.1| - 3.8e-13 49.9 0.1 5.1e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476137|ref|YP_004615278.1| - 1.8e-11 43.8 0.1 2.2e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336476137|ref|YP_004615278.1| - 1.3e-10 40.8 0.2 1.6e-10 40.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|336476137|ref|YP_004615278.1| - 4.6e-09 35.8 1.2 8.6e-09 34.9 0.3 1.6 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|336476137|ref|YP_004615278.1| - 1.2e-07 31.9 0.0 1.6e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|336476137|ref|YP_004615278.1| - 5.6e-07 29.3 0.1 7.4e-07 28.9 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.7 gi|336476137|ref|YP_004615278.1| - 3.2e-06 27.5 0.0 4.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336476137|ref|YP_004615278.1| - 3.6e-06 26.9 0.0 4.1e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476137|ref|YP_004615278.1| - 1.8e-05 25.1 0.1 2.5e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336476137|ref|YP_004615278.1| - 2.4e-05 23.5 0.2 2.9e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|336476137|ref|YP_004615278.1| - 5.9e-05 22.2 0.0 8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|336476137|ref|YP_004615278.1| - 8.1e-05 22.0 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 PCMT PF01135.14 gi|336476137|ref|YP_004615278.1| - 0.00014 21.5 0.2 0.00017 21.1 0.1 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|336476137|ref|YP_004615278.1| - 0.00015 21.2 0.2 0.00019 20.8 0.1 1.2 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|336476137|ref|YP_004615278.1| - 0.00022 20.8 0.4 0.00093 18.9 0.3 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336476137|ref|YP_004615278.1| - 0.00028 20.6 0.0 0.00037 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|336476137|ref|YP_004615278.1| - 0.00036 19.6 0.4 0.00094 18.2 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase UPF0020 PF01170.13 gi|336476137|ref|YP_004615278.1| - 0.00045 19.8 0.1 0.00063 19.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.11 gi|336476137|ref|YP_004615278.1| - 0.00048 19.7 0.4 0.0014 18.2 0.1 1.6 1 1 1 2 2 2 1 Met-10+ like-protein FtsJ PF01728.14 gi|336476137|ref|YP_004615278.1| - 0.00048 20.1 0.1 0.00059 19.8 0.1 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_5 PF01795.14 gi|336476137|ref|YP_004615278.1| - 0.0015 17.8 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family Peptidase_M10_C PF08548.6 gi|336476137|ref|YP_004615278.1| - 0.0075 15.8 0.2 0.0097 15.4 0.1 1.1 1 0 0 1 1 1 1 Peptidase M10 serralysin C terminal Methyltransf_15 PF09445.5 gi|336476137|ref|YP_004615278.1| - 0.0097 15.4 0.4 0.015 14.8 0.2 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GidB PF02527.10 gi|336476137|ref|YP_004615278.1| - 0.015 14.4 0.3 0.02 14.0 0.2 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MetW PF07021.7 gi|336476137|ref|YP_004615278.1| - 0.027 13.8 0.8 0.049 13.0 0.4 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|336476137|ref|YP_004615278.1| - 0.031 13.2 0.0 0.11 11.5 0.0 1.6 1 1 1 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|336476137|ref|YP_004615278.1| - 0.057 12.4 0.1 0.09 11.8 0.0 1.3 1 1 0 1 1 1 0 O-methyltransferase Methyltransf_2 PF00891.13 gi|336476137|ref|YP_004615278.1| - 0.069 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_16 PF10294.4 gi|336476137|ref|YP_004615278.1| - 0.084 12.3 0.1 0.11 11.9 0.1 1.3 1 1 0 1 1 1 0 Putative methyltransferase FmrO PF07091.6 gi|336476137|ref|YP_004615278.1| - 0.13 11.2 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) TP_methylase PF00590.15 gi|336476138|ref|YP_004615279.1| - 4.9e-31 108.0 0.0 2e-30 106.1 0.0 1.7 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|336476139|ref|YP_004615280.1| - 8.8e-46 156.2 0.0 1e-45 156.0 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|336476139|ref|YP_004615280.1| - 0.00024 21.3 0.1 0.0032 17.6 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Dus PF01207.12 gi|336476139|ref|YP_004615280.1| - 0.02 13.7 0.1 3.1 6.5 0.1 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) TP_methylase PF00590.15 gi|336476140|ref|YP_004615281.1| - 1.9e-36 125.7 0.2 2.3e-36 125.5 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF318 PF03773.8 gi|336476140|ref|YP_004615281.1| - 0.012 14.5 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 Predicted permease CbiC PF02570.10 gi|336476141|ref|YP_004615282.1| - 2.9e-61 206.3 0.8 3.6e-61 206.0 0.5 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase Reductase_C PF14759.1 gi|336476141|ref|YP_004615282.1| - 0.096 12.9 0.0 0.92 9.8 0.0 2.3 1 1 1 2 2 2 0 Reductase C-terminal DsbD PF02683.10 gi|336476142|ref|YP_004615283.1| - 4.9e-36 124.3 22.9 6.2e-36 123.9 15.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|336476142|ref|YP_004615283.1| - 7.4e-12 45.4 20.7 1e-11 44.9 14.3 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.14 gi|336476142|ref|YP_004615283.1| - 0.034 14.2 1.6 0.034 14.2 1.1 3.1 3 1 1 4 4 4 0 Uncharacterized protein family UPF0016 DUF373 PF04123.8 gi|336476142|ref|YP_004615283.1| - 0.41 9.6 12.8 0.49 9.3 8.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Herpes_US9 PF06072.6 gi|336476142|ref|YP_004615283.1| - 0.58 10.0 0.1 0.58 10.0 0.1 3.4 4 1 0 4 4 4 0 Alphaherpesvirus tegument protein US9 Thioredoxin PF00085.15 gi|336476143|ref|YP_004615284.1| - 4.3e-12 45.6 0.0 5.8e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|336476143|ref|YP_004615284.1| - 9.8e-06 25.6 0.0 1.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|336476143|ref|YP_004615284.1| - 1.9e-05 24.2 0.1 0.0017 17.9 0.0 2.3 1 1 1 2 2 2 2 Redoxin Thioredoxin_3 PF13192.1 gi|336476143|ref|YP_004615284.1| - 8.9e-05 22.2 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|336476143|ref|YP_004615284.1| - 0.00041 20.5 0.1 0.00077 19.6 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain DUF953 PF06110.6 gi|336476143|ref|YP_004615284.1| - 0.00055 19.3 0.0 0.00075 18.9 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) AhpC-TSA PF00578.16 gi|336476143|ref|YP_004615284.1| - 0.0018 17.9 0.1 0.085 12.5 0.0 2.1 1 1 1 2 2 2 1 AhpC/TSA family TraF PF13728.1 gi|336476143|ref|YP_004615284.1| - 0.0044 16.5 0.0 0.0053 16.2 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DIM1 PF02966.11 gi|336476143|ref|YP_004615284.1| - 0.014 14.8 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_9 PF14595.1 gi|336476143|ref|YP_004615284.1| - 0.016 14.7 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DUF929 PF06053.6 gi|336476143|ref|YP_004615284.1| - 0.031 13.3 1.1 2.4 7.2 0.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF929) HyaE PF07449.6 gi|336476143|ref|YP_004615284.1| - 0.04 13.8 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|336476143|ref|YP_004615284.1| - 0.058 13.6 0.0 0.098 12.9 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_7 PF13899.1 gi|336476143|ref|YP_004615284.1| - 0.074 13.0 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like Pecanex_C PF05041.10 gi|336476143|ref|YP_004615284.1| - 0.086 11.8 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 Pecanex protein (C-terminus) RibD_C PF01872.12 gi|336476144|ref|YP_004615285.1| - 1.6e-48 164.9 0.1 1.8e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.23 gi|336476145|ref|YP_004615286.1| - 1e-45 153.2 11.1 2.1e-16 59.4 0.3 4.2 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|336476146|ref|YP_004615287.1| - 7.4e-40 136.3 0.0 8.3e-40 136.2 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Oxidored_nitro PF00148.14 gi|336476146|ref|YP_004615287.1| - 0.057 12.0 0.1 0.089 11.4 0.1 1.4 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Usp PF00582.21 gi|336476147|ref|YP_004615288.1| - 3.8e-37 127.6 0.0 4.2e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|336476148|ref|YP_004615289.1| - 1.2e-23 84.3 0.5 1.7e-23 83.7 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336476148|ref|YP_004615289.1| - 1e-12 48.7 0.0 3.2e-11 43.8 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|336476148|ref|YP_004615289.1| - 3e-08 33.3 0.2 2.8e-07 30.0 0.0 2.2 2 1 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.17 gi|336476148|ref|YP_004615289.1| - 1e-07 31.2 0.0 2e-07 30.2 0.0 1.6 1 1 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|336476148|ref|YP_004615289.1| - 1.6e-06 27.8 0.0 3.6e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase AAA_5 PF07728.9 gi|336476149|ref|YP_004615290.1| - 2.5e-150 493.7 0.7 2.6e-25 88.7 0.0 6.4 6 0 0 6 6 6 6 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|336476149|ref|YP_004615290.1| - 3.4e-25 88.5 0.0 0.0091 15.4 0.0 6.7 6 0 0 6 6 6 6 IstB-like ATP binding protein AAA_3 PF07726.6 gi|336476149|ref|YP_004615290.1| - 4.5e-25 87.7 0.0 2.4e-05 23.9 0.0 5.5 5 0 0 5 5 5 4 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336476149|ref|YP_004615290.1| - 4.7e-21 74.9 0.4 0.018 14.5 0.0 7.2 7 0 0 7 7 7 5 Sigma-54 interaction domain AAA_22 PF13401.1 gi|336476149|ref|YP_004615290.1| - 1.5e-19 70.4 0.2 0.0065 16.6 0.0 7.6 6 1 0 6 6 6 3 AAA domain AAA PF00004.24 gi|336476149|ref|YP_004615290.1| - 1.5e-18 67.2 0.0 0.025 14.7 0.0 6.6 6 0 0 6 6 6 3 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|336476149|ref|YP_004615290.1| - 2.7e-16 60.0 4.2 0.0012 18.9 0.0 7.4 8 0 0 8 8 6 3 AAA ATPase domain Mg_chelatase PF01078.16 gi|336476149|ref|YP_004615290.1| - 1.7e-15 56.7 4.4 0.0064 15.6 0.0 7.3 6 1 1 7 7 7 3 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|336476149|ref|YP_004615290.1| - 2e-15 56.6 0.0 0.16 11.1 0.0 6.5 6 0 0 6 6 6 3 PhoH-like protein AAA_2 PF07724.9 gi|336476149|ref|YP_004615290.1| - 2.3e-15 56.9 1.7 0.095 12.6 0.0 6.6 6 0 0 6 6 6 4 AAA domain (Cdc48 subfamily) ABC_tran PF00005.22 gi|336476149|ref|YP_004615290.1| - 1.8e-14 54.2 5.7 0.0044 17.3 0.0 6.6 7 0 0 7 7 5 3 ABC transporter MCM PF00493.18 gi|336476149|ref|YP_004615290.1| - 2e-14 53.1 4.1 0.23 10.2 0.0 7.1 7 0 0 7 7 7 4 MCM2/3/5 family T2SE PF00437.15 gi|336476149|ref|YP_004615290.1| - 4e-13 48.8 0.0 5.6e-05 22.1 0.0 4.6 5 0 0 5 5 5 3 Type II/IV secretion system protein AAA_14 PF13173.1 gi|336476149|ref|YP_004615290.1| - 7.5e-12 45.2 0.0 1.7 8.5 0.0 6.6 6 0 0 6 6 6 2 AAA domain VWA PF00092.23 gi|336476149|ref|YP_004615290.1| - 1.1e-11 44.7 0.1 2.2e-11 43.7 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_33 PF13671.1 gi|336476149|ref|YP_004615290.1| - 1.4e-11 44.4 0.0 0.1 12.4 0.0 6.5 6 0 0 6 6 6 3 AAA domain Sigma54_activ_2 PF14532.1 gi|336476149|ref|YP_004615290.1| - 4.5e-11 42.9 0.0 4 7.4 0.0 6.5 6 0 0 6 6 6 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|336476149|ref|YP_004615290.1| - 4.6e-11 42.0 0.1 0.17 11.4 0.0 6.2 6 0 0 6 6 6 2 P-loop containing region of AAA domain TIP49 PF06068.8 gi|336476149|ref|YP_004615290.1| - 5.3e-11 41.8 0.0 0.12 11.0 0.0 6.2 6 0 0 6 6 6 1 TIP49 C-terminus VWA_2 PF13519.1 gi|336476149|ref|YP_004615290.1| - 7.8e-11 42.3 0.1 4.7e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain KaiC PF06745.8 gi|336476149|ref|YP_004615290.1| - 1.2e-09 37.6 0.4 2.9 6.9 0.0 6.4 6 0 0 6 6 6 0 KaiC DUF815 PF05673.8 gi|336476149|ref|YP_004615290.1| - 2.1e-09 36.6 3.0 0.39 9.6 0.0 6.3 6 0 0 6 6 6 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|336476149|ref|YP_004615290.1| - 1.6e-08 34.1 0.2 5.9 6.2 0.0 7.4 6 2 2 8 8 8 0 AAA domain AAA_17 PF13207.1 gi|336476149|ref|YP_004615290.1| - 3.3e-06 27.9 12.6 0.5 11.1 0.0 7.5 7 1 0 7 7 5 1 AAA domain Guanylate_kin PF00625.16 gi|336476149|ref|YP_004615290.1| - 2.6e-05 23.7 0.1 1.5 8.1 0.0 3.6 3 0 0 3 3 3 2 Guanylate kinase RNA_helicase PF00910.17 gi|336476149|ref|YP_004615290.1| - 3.3e-05 24.0 0.0 2.2 8.4 0.0 4.9 5 0 0 5 5 3 1 RNA helicase ResIII PF04851.10 gi|336476149|ref|YP_004615290.1| - 6.5e-05 22.8 0.0 22 4.7 0.0 5.4 5 0 0 5 5 5 0 Type III restriction enzyme, res subunit AAA_PrkA PF08298.6 gi|336476149|ref|YP_004615290.1| - 7.3e-05 21.6 0.1 0.84 8.2 0.0 3.5 3 0 0 3 3 3 2 PrkA AAA domain AAA_19 PF13245.1 gi|336476149|ref|YP_004615290.1| - 9.4e-05 22.0 0.0 33 4.3 0.0 5.9 6 0 0 6 6 6 0 Part of AAA domain AAA_18 PF13238.1 gi|336476149|ref|YP_004615290.1| - 0.0001 22.6 1.6 2.5 8.3 0.0 5.3 4 0 0 4 4 3 1 AAA domain RuvB_N PF05496.7 gi|336476149|ref|YP_004615290.1| - 0.00012 21.2 4.9 4.1 6.3 0.1 6.3 6 2 0 6 6 6 0 Holliday junction DNA helicase ruvB N-terminus AFG1_ATPase PF03969.11 gi|336476149|ref|YP_004615290.1| - 0.00012 20.9 0.0 1.1 7.9 0.0 3.6 3 0 0 3 3 3 1 AFG1-like ATPase DUF258 PF03193.11 gi|336476149|ref|YP_004615290.1| - 0.00014 21.0 0.1 6.3 5.9 0.0 4.8 5 0 0 5 5 5 0 Protein of unknown function, DUF258 DUF137 PF02006.11 gi|336476149|ref|YP_004615290.1| - 0.00066 19.1 0.4 2.1 7.6 0.0 4.2 4 0 0 4 4 4 1 Protein of unknown function DUF137 Gtr1_RagA PF04670.7 gi|336476149|ref|YP_004615290.1| - 0.0021 17.2 2.3 4.5 6.3 0.0 3.9 4 0 0 4 4 3 0 Gtr1/RagA G protein conserved region AAA_21 PF13304.1 gi|336476149|ref|YP_004615290.1| - 0.0022 18.0 0.0 5.2 6.9 0.0 3.7 3 0 0 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|336476149|ref|YP_004615290.1| - 0.0023 17.4 8.1 2.2 7.6 0.1 4.6 4 2 0 4 4 3 1 AAA-like domain AAA_7 PF12775.2 gi|336476149|ref|YP_004615290.1| - 0.0032 16.6 3.5 9.8 5.1 0.0 4.9 6 0 0 6 6 5 0 P-loop containing dynein motor region D3 SMC_N PF02463.14 gi|336476149|ref|YP_004615290.1| - 0.005 16.1 0.0 16 4.6 0.0 3.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain Viral_helicase1 PF01443.13 gi|336476149|ref|YP_004615290.1| - 0.0077 15.7 0.0 2.2 7.7 0.0 3.8 5 0 0 5 5 4 1 Viral (Superfamily 1) RNA helicase CobT_C PF11775.3 gi|336476149|ref|YP_004615290.1| - 0.01 15.2 0.0 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain UPF0079 PF02367.12 gi|336476149|ref|YP_004615290.1| - 0.012 15.2 2.0 55 3.4 0.0 5.5 6 0 0 6 6 6 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|336476149|ref|YP_004615290.1| - 0.025 14.2 0.1 20 4.8 0.0 3.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B PPV_E1_C PF00519.12 gi|336476149|ref|YP_004615290.1| - 0.037 12.6 0.1 15 4.0 0.0 3.3 3 0 0 3 3 3 0 Papillomavirus helicase APS_kinase PF01583.15 gi|336476149|ref|YP_004615290.1| - 0.065 12.8 0.3 23 4.5 0.0 3.6 3 0 0 3 3 3 0 Adenylylsulphate kinase AAA_23 PF13476.1 gi|336476149|ref|YP_004615290.1| - 0.086 13.1 4.4 52 4.0 4.0 3.6 4 0 0 4 4 3 0 AAA domain PduV-EutP PF10662.4 gi|336476149|ref|YP_004615290.1| - 0.12 11.8 0.2 44 3.5 0.0 4.1 6 0 0 6 6 3 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|336476149|ref|YP_004615290.1| - 0.15 12.0 0.0 19 5.2 0.0 3.5 3 0 0 3 3 3 0 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|336476149|ref|YP_004615290.1| - 0.24 10.8 0.0 15 4.9 0.0 2.9 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain NACHT PF05729.7 gi|336476149|ref|YP_004615290.1| - 0.53 9.9 6.5 70 3.0 0.0 5.8 7 0 0 7 7 6 0 NACHT domain DEAD PF00270.24 gi|336476149|ref|YP_004615290.1| - 0.85 9.0 0.0 1.3e+02 1.9 0.0 3.9 5 0 0 5 5 3 0 DEAD/DEAH box helicase WD40 PF00400.27 gi|336476149|ref|YP_004615290.1| - 0.92 9.5 14.5 52 3.9 0.0 6.3 7 0 0 7 7 4 0 WD domain, G-beta repeat KaiC PF06745.8 gi|336476150|ref|YP_004615291.1| - 4.9e-72 241.7 0.4 5.6e-72 241.5 0.3 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|336476150|ref|YP_004615291.1| - 1.7e-06 26.6 0.1 2.2e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|336476150|ref|YP_004615291.1| - 1.7e-06 27.5 0.0 2.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.7 gi|336476150|ref|YP_004615291.1| - 0.085 12.3 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) DUF2075 PF09848.4 gi|336476150|ref|YP_004615291.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) S-layer PF07752.6 gi|336476151|ref|YP_004615292.1| - 3.6e-126 419.6 18.2 7.4e-65 218.7 2.4 2.5 2 1 0 2 2 2 2 S-layer protein PKD PF00801.15 gi|336476151|ref|YP_004615292.1| - 4.6e-38 128.7 22.5 5.3e-19 67.7 2.3 3.7 3 1 0 3 3 3 2 PKD domain Pep_M12B_propep PF01562.14 gi|336476151|ref|YP_004615292.1| - 5.1e-09 36.0 0.0 0.0031 17.3 0.0 2.5 2 0 0 2 2 2 2 Reprolysin family propeptide Big_4 PF07532.6 gi|336476151|ref|YP_004615292.1| - 5.5e-05 22.6 12.6 0.078 12.5 1.0 3.5 3 0 0 3 3 3 3 Bacterial Ig-like domain (group 4) REJ PF02010.10 gi|336476151|ref|YP_004615292.1| - 0.0011 17.3 2.7 0.12 10.6 2.0 2.2 1 1 1 2 2 2 2 REJ domain SnoaL_4 PF13577.1 gi|336476151|ref|YP_004615292.1| - 0.0055 16.6 1.4 0.48 10.3 0.1 3.6 3 0 0 3 3 3 1 SnoaL-like domain IspD PF01128.14 gi|336476151|ref|YP_004615292.1| - 0.0093 15.5 0.1 3.2 7.2 0.0 2.5 2 0 0 2 2 2 2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF807 PF05660.6 gi|336476151|ref|YP_004615292.1| - 0.18 11.4 0.6 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 Coxiella burnetii protein of unknown function (DUF807) Big_3_4 PF13754.1 gi|336476151|ref|YP_004615292.1| - 1.4 9.3 31.3 0.12 12.6 1.7 5.2 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 3) DUF3742 PF12553.3 gi|336476152|ref|YP_004615293.1| - 0.068 13.6 0.1 0.068 13.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) TctB PF07331.6 gi|336476152|ref|YP_004615293.1| - 0.11 12.2 1.1 0.24 11.0 0.8 1.5 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family PepSY_2 PF13670.1 gi|336476152|ref|YP_004615293.1| - 0.3 11.0 0.2 0.3 11.0 0.1 1.8 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain SecE PF00584.15 gi|336476152|ref|YP_004615293.1| - 1.1 8.8 3.4 3.4 7.3 0.2 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex S-layer PF07752.6 gi|336476154|ref|YP_004615295.1| - 8.9e-116 385.5 36.9 1.8e-61 207.6 11.5 2.6 3 0 0 3 3 3 2 S-layer protein PKD PF00801.15 gi|336476154|ref|YP_004615295.1| - 2e-35 120.3 22.6 9.7e-19 66.8 2.7 3.6 4 0 0 4 4 4 2 PKD domain REJ PF02010.10 gi|336476154|ref|YP_004615295.1| - 0.0075 14.6 3.5 0.69 8.1 0.2 2.3 1 1 0 2 2 2 2 REJ domain DUF1871 PF08958.5 gi|336476154|ref|YP_004615295.1| - 0.013 15.5 0.0 6.2 6.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1871) Hus1 PF04005.7 gi|336476154|ref|YP_004615295.1| - 0.23 10.3 0.0 17 4.2 0.0 2.2 2 0 0 2 2 2 0 Hus1-like protein S-layer PF07752.6 gi|336476155|ref|YP_004615296.1| - 1.3e-123 411.2 29.4 1.1e-62 211.5 4.7 2.2 2 0 0 2 2 2 2 S-layer protein Trypan_PARP PF05887.6 gi|336476155|ref|YP_004615296.1| - 4.5e-12 45.9 32.7 1.2e-11 44.5 22.7 1.7 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Transcrip_reg PF01709.15 gi|336476155|ref|YP_004615296.1| - 0.087 11.9 0.1 0.9 8.6 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator Neisseria_TspB PF05616.8 gi|336476155|ref|YP_004615296.1| - 1.2 7.4 22.6 1.9 6.7 15.7 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein PhrC_PhrF PF11131.3 gi|336476156|ref|YP_004615297.1| - 0.015 14.8 0.1 0.029 13.9 0.1 1.5 1 0 0 1 1 1 0 Rap-phr extracellular signalling DUF1218 PF06749.7 gi|336476157|ref|YP_004615298.1| - 1.4 9.4 4.6 5 7.6 0.6 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1218) DUF1294 PF06961.8 gi|336476158|ref|YP_004615299.1| - 4e-18 65.0 0.6 5.7e-18 64.6 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF2283 PF10049.4 gi|336476159|ref|YP_004615300.1| - 2.3e-06 27.3 3.0 3e-06 26.9 0.5 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2283) GXGXG PF01493.14 gi|336476160|ref|YP_004615301.1| - 9.2e-37 126.0 30.8 3.1e-34 117.7 17.2 1.9 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.6 gi|336476161|ref|YP_004615302.1| - 6.7e-56 190.2 0.1 7.9e-56 189.9 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|336476161|ref|YP_004615302.1| - 5.5e-10 38.9 0.1 3.4e-08 33.1 0.0 3.0 3 0 0 3 3 3 1 Amidohydrolase Molybdopterin PF00384.17 gi|336476162|ref|YP_004615303.1| - 3.9e-17 62.1 0.0 1.1e-16 60.6 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|336476162|ref|YP_004615303.1| - 0.05 13.4 0.6 0.12 12.2 0.4 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.16 gi|336476163|ref|YP_004615304.1| - 1.3e-19 70.0 0.0 1.5e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain RsmJ PF04378.8 gi|336476163|ref|YP_004615304.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ UAE_UbL PF14732.1 gi|336476163|ref|YP_004615304.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain FGE-sulfatase PF03781.11 gi|336476164|ref|YP_004615305.1| - 1.3e-49 168.9 4.9 1.1e-48 165.9 3.4 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 SBP_bac_5 PF00496.17 gi|336476165|ref|YP_004615306.1| - 5e-89 298.7 0.9 6e-89 298.4 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.7 gi|336476166|ref|YP_004615307.1| - 7.5e-23 80.8 0.0 1.3e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476166|ref|YP_004615307.1| - 3.1e-21 75.5 0.0 5.1e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336476166|ref|YP_004615307.1| - 6.4e-16 58.4 0.0 9.5e-16 57.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336476166|ref|YP_004615307.1| - 1.6e-13 50.2 0.0 3.1e-13 49.3 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336476166|ref|YP_004615307.1| - 4.9e-13 49.3 0.0 9e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336476166|ref|YP_004615307.1| - 3.2e-12 47.0 0.0 1e-11 45.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476166|ref|YP_004615307.1| - 7.3e-12 45.6 0.0 1.2e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336476166|ref|YP_004615307.1| - 5.6e-10 39.2 0.0 1e-09 38.4 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|336476166|ref|YP_004615307.1| - 7.8e-08 31.8 0.0 1.1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|336476166|ref|YP_004615307.1| - 8.9e-07 28.4 0.0 1.4e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|336476166|ref|YP_004615307.1| - 1.2e-05 24.6 0.0 1.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|336476166|ref|YP_004615307.1| - 2.5e-05 23.9 0.0 4.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336476166|ref|YP_004615307.1| - 3e-05 23.2 0.0 4.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|336476166|ref|YP_004615307.1| - 0.0003 19.8 0.0 0.00049 19.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.6 gi|336476166|ref|YP_004615307.1| - 0.00034 20.0 0.0 0.00048 19.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|336476166|ref|YP_004615307.1| - 0.001 18.6 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|336476166|ref|YP_004615307.1| - 0.0023 16.8 0.0 0.0036 16.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase UPF0020 PF01170.13 gi|336476166|ref|YP_004615307.1| - 0.015 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 CMAS PF02353.15 gi|336476166|ref|YP_004615307.1| - 0.02 13.9 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|336476166|ref|YP_004615307.1| - 0.021 14.2 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) UDPG_MGDP_dh_N PF03721.9 gi|336476166|ref|YP_004615307.1| - 0.036 13.4 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|336476166|ref|YP_004615307.1| - 0.045 13.4 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UPF0146 PF03686.8 gi|336476166|ref|YP_004615307.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) DUF43 PF01861.11 gi|336476166|ref|YP_004615307.1| - 0.13 11.2 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 Methyltransf_15 PF09445.5 gi|336476166|ref|YP_004615307.1| - 0.15 11.6 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase YXWGXW PF12779.2 gi|336476166|ref|YP_004615307.1| - 0.18 11.7 0.3 0.18 11.7 0.2 1.7 2 0 0 2 2 1 0 YXWGXW repeat (2 copies) BPD_transp_1 PF00528.17 gi|336476167|ref|YP_004615308.1| - 8.3e-45 152.5 10.0 8.3e-45 152.5 6.9 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336476168|ref|YP_004615309.1| - 2.2e-26 92.5 11.7 2.2e-26 92.5 8.1 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|336476168|ref|YP_004615309.1| - 1.5e-05 24.2 0.1 1.5e-05 24.2 0.0 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C EpuA PF11772.3 gi|336476168|ref|YP_004615309.1| - 0.085 12.3 0.1 0.085 12.3 0.1 4.0 5 1 0 5 5 5 0 DNA-directed RNA polymerase subunit beta Fim-adh_lectin PF09222.5 gi|336476168|ref|YP_004615309.1| - 0.086 12.1 0.7 0.13 11.5 0.5 1.2 1 0 0 1 1 1 0 Fimbrial adhesin F17-AG, lectin domain ABC_tran PF00005.22 gi|336476169|ref|YP_004615310.1| - 1.1e-23 84.0 0.0 1.6e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336476169|ref|YP_004615310.1| - 3.9e-14 52.7 0.9 7.3e-14 51.8 0.6 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|336476169|ref|YP_004615310.1| - 1.9e-06 27.2 0.0 2.6e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336476169|ref|YP_004615310.1| - 2.4e-06 27.7 2.6 7.9e-05 22.7 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336476169|ref|YP_004615310.1| - 1.5e-05 25.0 0.1 9.7e-05 22.4 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336476169|ref|YP_004615310.1| - 0.0012 18.9 0.0 0.0031 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336476169|ref|YP_004615310.1| - 0.0015 17.6 0.2 0.16 10.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|336476169|ref|YP_004615310.1| - 0.0037 16.4 0.0 0.024 13.7 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|336476169|ref|YP_004615310.1| - 0.0074 16.6 0.0 0.011 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336476169|ref|YP_004615310.1| - 0.011 14.8 2.2 0.028 13.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF2075 PF09848.4 gi|336476169|ref|YP_004615310.1| - 0.013 14.5 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|336476169|ref|YP_004615310.1| - 0.026 14.0 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|336476169|ref|YP_004615310.1| - 0.075 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|336476169|ref|YP_004615310.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|336476170|ref|YP_004615311.1| - 2.3e-26 92.7 0.1 3.4e-26 92.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476170|ref|YP_004615311.1| - 1.3e-13 51.5 2.1 2e-11 44.3 1.5 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336476170|ref|YP_004615311.1| - 2.9e-07 29.9 0.8 4.6e-07 29.2 0.5 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336476170|ref|YP_004615311.1| - 0.00029 20.9 0.3 0.00085 19.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|336476170|ref|YP_004615311.1| - 0.00033 20.9 0.0 0.00074 19.8 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region IstB_IS21 PF01695.12 gi|336476170|ref|YP_004615311.1| - 0.0008 18.8 0.2 0.0096 15.3 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF258 PF03193.11 gi|336476170|ref|YP_004615311.1| - 0.00081 18.6 0.1 0.0013 17.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336476170|ref|YP_004615311.1| - 0.0069 16.3 0.3 0.0085 16.0 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain PduV-EutP PF10662.4 gi|336476170|ref|YP_004615311.1| - 0.011 15.2 2.0 0.09 12.2 0.1 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|336476170|ref|YP_004615311.1| - 0.025 14.2 0.5 0.043 13.4 0.3 1.6 1 1 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|336476170|ref|YP_004615311.1| - 0.028 13.9 0.0 0.082 12.4 0.0 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|336476170|ref|YP_004615311.1| - 0.046 13.9 3.4 0.54 10.4 2.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|336476170|ref|YP_004615311.1| - 0.058 13.6 1.5 0.15 12.4 1.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|336476170|ref|YP_004615311.1| - 0.064 12.2 2.1 0.088 11.8 0.3 1.8 1 1 1 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|336476170|ref|YP_004615311.1| - 0.078 12.4 0.4 0.19 11.1 0.3 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activ_2 PF14532.1 gi|336476170|ref|YP_004615311.1| - 0.097 12.7 0.1 2.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|336476170|ref|YP_004615311.1| - 0.11 12.8 0.4 0.24 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|336476170|ref|YP_004615311.1| - 0.21 11.3 1.0 0.79 9.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|336476170|ref|YP_004615311.1| - 0.28 10.7 1.7 0.4 10.2 0.3 2.1 2 1 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|336476170|ref|YP_004615311.1| - 0.32 10.0 5.0 0.68 9.0 0.0 2.9 3 1 0 3 3 3 0 KaiC Fer4_16 PF13484.1 gi|336476171|ref|YP_004615312.1| - 1.2e-05 25.9 11.8 2.4e-05 24.9 8.2 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|336476171|ref|YP_004615312.1| - 4e-05 23.9 10.0 0.00011 22.4 7.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476171|ref|YP_004615312.1| - 0.00021 21.0 14.9 0.0025 17.5 10.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476171|ref|YP_004615312.1| - 0.0011 19.3 5.6 0.18 12.2 0.0 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476171|ref|YP_004615312.1| - 0.0044 16.8 19.5 0.0083 15.9 2.1 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|336476171|ref|YP_004615312.1| - 0.0065 16.0 18.3 0.0099 15.4 2.4 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476171|ref|YP_004615312.1| - 0.024 14.9 14.8 0.47 10.7 10.4 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336476171|ref|YP_004615312.1| - 0.13 12.3 12.9 2.7 8.1 9.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476171|ref|YP_004615312.1| - 1.3 8.9 18.5 0.22 11.3 1.7 3.6 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476171|ref|YP_004615312.1| - 3.9 8.0 14.3 3.9 8.0 3.1 3.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336476171|ref|YP_004615312.1| - 6.2 7.6 20.4 0.39 11.3 0.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain FKBP_C PF00254.23 gi|336476172|ref|YP_004615313.1| - 1.5e-22 79.4 0.2 2e-22 78.9 0.2 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CMD PF02627.15 gi|336476173|ref|YP_004615314.1| - 1e-20 73.3 0.2 1.3e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Rap1_C PF11626.3 gi|336476173|ref|YP_004615314.1| - 0.051 13.4 0.1 0.093 12.6 0.0 1.4 1 1 0 1 1 1 0 TRF2-interacting telomeric protein/Rap1 - C terminal domain Flavodoxin_3 PF12641.2 gi|336476174|ref|YP_004615315.1| - 2e-28 98.8 0.1 2.3e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|336476174|ref|YP_004615315.1| - 1.2e-11 44.2 0.1 1e-06 28.1 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_5 PF12724.2 gi|336476174|ref|YP_004615315.1| - 6.3e-09 35.9 0.0 8.3e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|336476174|ref|YP_004615315.1| - 9.4e-06 25.6 0.2 1.7e-05 24.8 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin Raffinose_syn PF05691.7 gi|336476174|ref|YP_004615315.1| - 0.054 11.0 0.0 0.064 10.7 0.0 1.1 1 0 0 1 1 1 0 Raffinose synthase or seed imbibition protein Sip1 OrfB_IS605 PF01385.14 gi|336476176|ref|YP_004615317.1| - 2.4e-43 148.1 8.0 2.4e-43 148.1 5.6 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|336476176|ref|YP_004615317.1| - 1.6e-21 75.7 0.4 3.1e-21 74.7 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|336476176|ref|YP_004615317.1| - 5.8e-20 70.3 0.2 2.6e-19 68.2 0.5 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2296 PF10058.4 gi|336476176|ref|YP_004615317.1| - 0.063 13.0 1.0 0.14 11.9 0.7 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Prok-RING_1 PF14446.1 gi|336476176|ref|YP_004615317.1| - 0.17 11.6 1.3 0.33 10.7 0.9 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|336476176|ref|YP_004615317.1| - 0.26 11.1 1.6 0.49 10.2 1.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|336476176|ref|YP_004615317.1| - 1.4 8.5 4.4 13 5.4 3.1 2.3 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|336476176|ref|YP_004615317.1| - 6.8 5.9 7.5 8.8 5.5 1.0 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others E1-E2_ATPase PF00122.15 gi|336476177|ref|YP_004615318.1| - 6.2e-59 198.8 1.1 6.2e-59 198.8 0.8 2.6 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336476177|ref|YP_004615318.1| - 9.2e-49 166.7 2.7 1.7e-48 165.8 1.9 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|336476177|ref|YP_004615318.1| - 4.5e-34 116.4 0.3 1.3e-15 57.2 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|336476177|ref|YP_004615318.1| - 6.2e-16 59.1 0.0 1.6e-15 57.7 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336476177|ref|YP_004615318.1| - 1.6e-05 24.6 3.5 0.00045 19.8 0.4 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.1 gi|336476177|ref|YP_004615318.1| - 0.013 15.4 0.8 9.7 6.2 0.0 3.1 4 0 0 4 4 4 0 Papain fold toxin 2 AHS1 PF02682.11 gi|336476177|ref|YP_004615318.1| - 0.057 12.8 0.9 13 5.1 0.0 3.1 2 1 1 3 3 3 0 Allophanate hydrolase subunit 1 Ribosomal_S13 PF00416.17 gi|336476177|ref|YP_004615318.1| - 0.069 13.6 0.8 2.1 8.8 0.0 2.9 3 0 0 3 3 3 0 Ribosomal protein S13/S18 SHOCT PF09851.4 gi|336476178|ref|YP_004615319.1| - 1.6e-10 40.0 1.0 2e-10 39.7 0.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain TctB PF07331.6 gi|336476178|ref|YP_004615319.1| - 0.0075 15.9 0.0 0.0077 15.8 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family CcmH PF03918.9 gi|336476178|ref|YP_004615319.1| - 0.012 14.5 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Halogen_Hydrol PF10112.4 gi|336476178|ref|YP_004615319.1| - 0.016 14.6 0.0 0.018 14.4 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4328 PF14219.1 gi|336476178|ref|YP_004615319.1| - 0.042 13.1 0.2 0.046 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4328) BatA PF07584.6 gi|336476178|ref|YP_004615319.1| - 0.058 13.5 0.0 0.067 13.3 0.0 1.2 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal LAB_N PF07578.6 gi|336476178|ref|YP_004615319.1| - 0.079 12.8 0.8 0.11 12.4 0.5 1.2 1 0 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain 2TM PF13239.1 gi|336476178|ref|YP_004615319.1| - 0.085 12.9 0.3 0.1 12.6 0.2 1.3 1 0 0 1 1 1 0 2TM domain Adipogenin PF15202.1 gi|336476178|ref|YP_004615319.1| - 0.086 12.7 0.0 0.099 12.5 0.0 1.1 1 0 0 1 1 1 0 Adipogenin DUF805 PF05656.9 gi|336476178|ref|YP_004615319.1| - 0.094 12.5 0.7 0.14 11.9 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Cytochrom_C PF00034.16 gi|336476179|ref|YP_004615320.1| - 8.5e-09 36.1 0.0 1.3e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|336476179|ref|YP_004615320.1| - 6.6e-06 26.1 0.0 9.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III DUF4198 PF10670.4 gi|336476180|ref|YP_004615321.1| - 1.4e-25 90.6 0.2 3.3e-25 89.3 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4198) DUF972 PF06156.8 gi|336476180|ref|YP_004615321.1| - 0.13 12.6 0.2 0.22 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DNA_pol_B PF00136.16 gi|336476181|ref|YP_004615322.1| - 6e-116 387.9 0.0 8.2e-116 387.5 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|336476181|ref|YP_004615322.1| - 5.2e-52 176.7 0.0 7.8e-52 176.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|336476181|ref|YP_004615322.1| - 0.022 14.2 0.0 0.059 12.9 0.0 1.6 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.8 gi|336476181|ref|YP_004615322.1| - 0.085 11.5 0.1 0.29 9.7 0.0 1.8 1 1 0 2 2 2 0 DNA polymerase type B, organellar and viral Amidohydro_4 PF13147.1 gi|336476182|ref|YP_004615323.1| - 2.6e-22 80.1 0.0 3.5e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|336476182|ref|YP_004615323.1| - 2.7e-18 66.7 0.7 5.1e-18 65.8 0.5 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|336476182|ref|YP_004615323.1| - 4.9e-13 48.6 0.5 1e-12 47.6 0.3 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|336476182|ref|YP_004615323.1| - 0.0016 17.7 0.0 0.018 14.3 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase family KaiC PF06745.8 gi|336476183|ref|YP_004615324.1| - 4.1e-41 140.5 0.1 8.1e-41 139.6 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336476183|ref|YP_004615324.1| - 3.6e-12 46.0 0.0 6e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|336476183|ref|YP_004615324.1| - 5.1e-08 32.1 0.0 7.3e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|336476183|ref|YP_004615324.1| - 1.5e-07 30.7 0.0 2.3e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|336476183|ref|YP_004615324.1| - 8.7e-06 24.3 0.1 0.083 11.1 0.0 2.7 2 1 1 3 3 3 2 GvpD gas vesicle protein AAA_19 PF13245.1 gi|336476183|ref|YP_004615324.1| - 4.3e-05 23.1 0.0 8.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain T2SE PF00437.15 gi|336476183|ref|YP_004615324.1| - 5.3e-05 22.2 0.0 8.5e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|336476183|ref|YP_004615324.1| - 0.00011 22.0 0.0 0.00028 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336476183|ref|YP_004615324.1| - 0.00012 22.8 0.1 0.00032 21.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|336476183|ref|YP_004615324.1| - 0.00099 18.5 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|336476183|ref|YP_004615324.1| - 0.0014 17.5 0.1 0.0021 17.0 0.0 1.2 1 0 0 1 1 1 1 Rad51 PPV_E1_C PF00519.12 gi|336476183|ref|YP_004615324.1| - 0.0028 16.3 0.1 0.029 12.9 0.0 2.0 2 0 0 2 2 2 1 Papillomavirus helicase AAA_18 PF13238.1 gi|336476183|ref|YP_004615324.1| - 0.0045 17.3 0.0 0.0091 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336476183|ref|YP_004615324.1| - 0.0045 16.8 0.0 0.0095 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336476183|ref|YP_004615324.1| - 0.0058 16.7 0.0 0.015 15.4 0.0 1.6 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|336476183|ref|YP_004615324.1| - 0.0062 16.2 0.0 0.015 15.0 0.0 1.8 2 0 0 2 2 1 1 NTPase AAA_24 PF13479.1 gi|336476183|ref|YP_004615324.1| - 0.0067 16.0 0.0 0.0098 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336476183|ref|YP_004615324.1| - 0.0076 16.4 0.4 0.013 15.6 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336476183|ref|YP_004615324.1| - 0.013 14.9 0.0 0.14 11.5 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain DAP3 PF10236.4 gi|336476183|ref|YP_004615324.1| - 0.015 14.2 0.0 1.4 7.7 0.0 2.1 1 1 1 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Arch_ATPase PF01637.13 gi|336476183|ref|YP_004615324.1| - 0.021 14.5 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase DUF2075 PF09848.4 gi|336476183|ref|YP_004615324.1| - 0.034 13.1 0.0 0.055 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|336476183|ref|YP_004615324.1| - 0.037 13.6 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|336476183|ref|YP_004615324.1| - 0.037 13.5 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336476183|ref|YP_004615324.1| - 0.048 13.3 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_32 PF13654.1 gi|336476183|ref|YP_004615324.1| - 0.065 11.8 0.0 0.36 9.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain PAXNEB PF05625.6 gi|336476183|ref|YP_004615324.1| - 0.068 11.9 0.2 0.11 11.2 0.2 1.2 1 0 0 1 1 1 0 PAXNEB protein MobB PF03205.9 gi|336476183|ref|YP_004615324.1| - 0.073 12.7 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|336476183|ref|YP_004615324.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|336476183|ref|YP_004615324.1| - 0.083 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.5 gi|336476183|ref|YP_004615324.1| - 0.12 11.5 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|336476183|ref|YP_004615324.1| - 0.12 12.5 0.0 0.36 11.0 0.0 1.8 2 0 0 2 2 1 0 RNA helicase DUF1614 PF07758.6 gi|336476184|ref|YP_004615325.1| - 6.5e-25 87.8 11.0 6.5e-25 87.8 7.6 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF4191 PF13829.1 gi|336476184|ref|YP_004615325.1| - 0.33 10.0 0.1 0.33 10.0 0.0 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4191) Peptidase_M50B PF13398.1 gi|336476184|ref|YP_004615325.1| - 1.8 7.9 13.9 3.2 7.0 6.8 2.2 2 0 0 2 2 2 0 Peptidase M50B-like YlaC PF10777.4 gi|336476184|ref|YP_004615325.1| - 5.2 6.6 8.0 1 8.8 0.3 2.3 2 0 0 2 2 2 0 Inner membrane protein YlaC KH_1 PF00013.24 gi|336476185|ref|YP_004615326.1| - 5.4e-20 70.7 9.3 1.6e-11 43.6 1.4 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|336476185|ref|YP_004615326.1| - 8.5e-10 38.0 9.1 6e-06 25.7 0.3 2.9 3 0 0 3 3 3 2 KH domain KH_2 PF07650.12 gi|336476185|ref|YP_004615326.1| - 0.00021 20.8 7.4 0.012 15.1 0.2 2.3 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|336476185|ref|YP_004615326.1| - 0.018 14.6 3.8 0.61 9.7 0.2 2.7 2 1 0 2 2 2 0 KH domain RIO1 PF01163.17 gi|336476186|ref|YP_004615327.1| - 3.6e-64 215.6 0.2 5e-64 215.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|336476186|ref|YP_004615327.1| - 4.3e-09 35.8 0.0 7.3e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|336476186|ref|YP_004615327.1| - 1.5e-05 24.1 0.1 0.00015 20.8 0.1 2.4 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|336476186|ref|YP_004615327.1| - 0.00031 20.5 0.0 0.0018 18.0 0.0 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|336476186|ref|YP_004615327.1| - 0.053 12.5 0.1 0.16 11.0 0.1 1.8 1 1 0 1 1 1 0 Protein tyrosine kinase Choline_kinase PF01633.15 gi|336476186|ref|YP_004615327.1| - 0.084 12.4 2.2 0.18 11.3 0.2 2.2 2 1 0 2 2 2 0 Choline/ethanolamine kinase TGT PF01702.13 gi|336476188|ref|YP_004615329.1| - 4.2e-50 170.2 0.0 5.4e-50 169.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase UbiA PF01040.13 gi|336476189|ref|YP_004615330.1| - 5.1e-36 124.2 17.6 6.4e-36 123.8 12.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.14 gi|336476189|ref|YP_004615330.1| - 1.5 8.1 11.6 2.6 7.3 0.6 2.3 2 0 0 2 2 2 0 PRA1 family protein Lycopene_cycl PF05834.7 gi|336476190|ref|YP_004615331.1| - 5e-09 35.5 0.0 1.2e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.19 gi|336476190|ref|YP_004615331.1| - 1e-08 34.4 0.0 3.7e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336476190|ref|YP_004615331.1| - 1.6e-08 33.4 0.6 9.3e-06 24.3 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|336476190|ref|YP_004615331.1| - 8e-07 29.1 0.0 1.5e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336476190|ref|YP_004615331.1| - 1.6e-05 24.1 0.0 0.085 11.8 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|336476190|ref|YP_004615331.1| - 0.00018 20.7 0.1 0.0006 19.0 0.1 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336476190|ref|YP_004615331.1| - 0.00021 20.4 0.0 0.00042 19.4 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|336476190|ref|YP_004615331.1| - 0.00027 21.3 0.0 0.35 11.2 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DUF3932 PF13068.1 gi|336476190|ref|YP_004615331.1| - 0.02 14.9 0.2 0.26 11.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3932) TrkA_N PF02254.13 gi|336476190|ref|YP_004615331.1| - 0.033 14.1 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.1 gi|336476190|ref|YP_004615331.1| - 0.034 14.2 0.0 0.26 11.3 0.0 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336476190|ref|YP_004615331.1| - 0.035 12.9 0.0 0.095 11.5 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain Radical_SAM PF04055.16 gi|336476191|ref|YP_004615332.1| - 9.8e-21 74.6 0.0 1.6e-20 73.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|336476191|ref|YP_004615332.1| - 2.4e-07 30.9 0.3 6.3e-07 29.6 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|336476191|ref|YP_004615332.1| - 5.6e-06 26.5 0.0 9.3e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336476191|ref|YP_004615332.1| - 0.0011 18.9 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TBPIP PF07106.8 gi|336476192|ref|YP_004615333.1| - 0.042 13.3 41.8 0.32 10.5 9.1 3.2 2 1 1 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Vps53_N PF04100.7 gi|336476192|ref|YP_004615333.1| - 0.043 12.5 19.9 0.21 10.3 7.6 2.6 1 1 0 2 2 2 0 Vps53-like, N-terminal APG6 PF04111.7 gi|336476192|ref|YP_004615333.1| - 0.085 11.8 39.4 0.067 12.2 9.8 2.3 2 0 0 2 2 2 0 Autophagy protein Apg6 Mating_N PF12731.2 gi|336476192|ref|YP_004615333.1| - 0.27 11.1 3.1 0.21 11.5 0.4 2.1 2 1 0 2 2 2 0 Mating-type protein beta 1 Laminin_II PF06009.7 gi|336476192|ref|YP_004615333.1| - 6 6.6 29.6 2 8.1 1.7 4.0 1 1 3 4 4 4 0 Laminin Domain II HAD PF12710.2 gi|336476193|ref|YP_004615334.1| - 5e-17 62.7 0.3 6.2e-17 62.3 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336476193|ref|YP_004615334.1| - 3.4e-13 50.4 1.5 6.1e-11 43.1 1.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|336476193|ref|YP_004615334.1| - 4.6e-10 39.0 0.3 1.6e-08 34.0 0.2 2.1 1 1 0 1 1 1 1 Putative Phosphatase Hydrolase_3 PF08282.7 gi|336476193|ref|YP_004615334.1| - 5.1e-10 39.3 0.5 2e-08 34.1 0.0 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|336476193|ref|YP_004615334.1| - 3.6e-07 30.5 0.0 8.9e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|336476193|ref|YP_004615334.1| - 0.018 14.3 0.1 4.2 6.6 0.0 2.2 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DUF705 PF05152.7 gi|336476193|ref|YP_004615334.1| - 0.043 12.8 0.1 0.089 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF705) MTD PF01993.13 gi|336476194|ref|YP_004615335.1| - 5.1e-95 317.6 1.7 5.7e-95 317.5 1.2 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase PK_C PF02887.11 gi|336476195|ref|YP_004615336.1| - 2.9e-16 59.0 0.5 4.2e-16 58.5 0.3 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.19 gi|336476195|ref|YP_004615336.1| - 0.0074 15.6 0.0 0.014 14.7 0.0 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF2855 PF11017.3 gi|336476195|ref|YP_004615336.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) CPSase_L_D3 PF02787.14 gi|336476195|ref|YP_004615336.1| - 0.14 11.9 0.1 14 5.4 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PAC2 PF09754.4 gi|336476196|ref|YP_004615337.1| - 3.3e-55 187.3 0.1 3.9e-55 187.1 0.1 1.0 1 0 0 1 1 1 1 PAC2 family GHMP_kinases_N PF00288.21 gi|336476196|ref|YP_004615337.1| - 0.092 12.8 0.6 0.33 11.0 0.1 2.1 2 1 0 2 2 2 0 GHMP kinases N terminal domain DUF473 PF04322.7 gi|336476197|ref|YP_004615338.1| - 3e-38 130.1 0.5 3.5e-38 129.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PKD PF00801.15 gi|336476198|ref|YP_004615339.1| - 7e-13 48.1 0.5 2.4e-12 46.3 0.1 2.1 2 0 0 2 2 2 1 PKD domain Big_3_4 PF13754.1 gi|336476198|ref|YP_004615339.1| - 1.1e-10 41.6 4.7 0.00082 19.6 0.1 4.4 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 3) Big_3_2 PF12245.3 gi|336476198|ref|YP_004615339.1| - 0.0016 17.9 0.1 0.57 9.7 0.0 3.2 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) SWM_repeat PF13753.1 gi|336476198|ref|YP_004615339.1| - 0.0042 16.1 7.2 0.05 12.6 0.0 3.5 2 1 0 3 3 3 1 Putative flagellar system-associated repeat Y_Y_Y PF07495.8 gi|336476198|ref|YP_004615339.1| - 0.0093 15.6 2.7 0.091 12.5 0.0 3.6 3 0 0 3 3 3 1 Y_Y_Y domain HYR PF02494.11 gi|336476198|ref|YP_004615339.1| - 0.016 15.2 0.1 1.2 9.1 0.0 2.9 2 0 0 2 2 2 0 HYR domain DUF4625 PF15418.1 gi|336476198|ref|YP_004615339.1| - 0.02 14.9 0.4 1.3 9.1 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) DUF169 PF02596.10 gi|336476200|ref|YP_004615341.1| - 1.3e-47 161.9 0.0 1.6e-47 161.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Endonuclease_5 PF04493.9 gi|336476201|ref|YP_004615342.1| - 2.3e-56 190.4 0.0 2.7e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V OpcA_G6PD_assem PF10128.4 gi|336476201|ref|YP_004615342.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase subunit tRNA-synt_2d PF01409.15 gi|336476202|ref|YP_004615343.1| - 1.7e-52 178.0 0.0 2.6e-48 164.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|336476202|ref|YP_004615343.1| - 0.0012 18.4 0.0 0.0046 16.5 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Translin PF01997.11 gi|336476203|ref|YP_004615344.1| - 2.2e-33 115.5 0.0 2.7e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 Translin family YfdX PF10938.3 gi|336476203|ref|YP_004615344.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 YfdX protein UPF0147 PF03685.8 gi|336476204|ref|YP_004615345.1| - 7.5e-36 121.8 3.1 8.2e-36 121.7 2.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|336476204|ref|YP_004615345.1| - 0.0046 17.0 0.2 0.16 12.1 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.7 gi|336476205|ref|YP_004615346.1| - 3.8e-17 61.7 1.3 3.8e-17 61.7 0.9 1.7 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF3279 PF11682.3 gi|336476205|ref|YP_004615346.1| - 0.033 13.7 0.1 0.058 12.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) DZR PF12773.2 gi|336476205|ref|YP_004615346.1| - 0.034 13.9 0.5 0.059 13.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Flagellin_C PF00700.16 gi|336476205|ref|YP_004615346.1| - 0.051 13.7 0.0 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region YdjO PF14169.1 gi|336476205|ref|YP_004615346.1| - 0.075 12.4 0.4 0.18 11.2 0.3 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO Prok-RING_1 PF14446.1 gi|336476205|ref|YP_004615346.1| - 0.11 12.3 0.7 0.16 11.7 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-met PF12874.2 gi|336476205|ref|YP_004615346.1| - 0.43 10.8 2.1 0.58 10.4 0.0 2.3 3 0 0 3 3 3 0 Zinc-finger of C2H2 type ERCC4 PF02732.10 gi|336476206|ref|YP_004615347.1| - 1.4e-25 89.7 0.2 7.9e-25 87.2 0.0 2.4 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|336476206|ref|YP_004615347.1| - 3.1e-20 71.8 0.0 3.6e-19 68.4 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|336476206|ref|YP_004615347.1| - 2e-17 63.2 0.0 5e-17 61.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|336476206|ref|YP_004615347.1| - 2.6e-12 46.9 0.0 7.2e-12 45.5 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|336476206|ref|YP_004615347.1| - 9.9e-12 44.5 0.0 2.5e-11 43.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336476206|ref|YP_004615347.1| - 5.4e-11 42.4 0.0 4.2e-10 39.6 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|336476206|ref|YP_004615347.1| - 5e-10 38.5 0.6 4e-07 29.3 0.0 3.4 4 0 0 4 4 4 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|336476206|ref|YP_004615347.1| - 0.0061 16.7 0.0 0.035 14.3 0.0 2.3 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold RNA_pol_A_CTD PF03118.10 gi|336476206|ref|YP_004615347.1| - 0.0081 15.5 0.5 0.027 13.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain HHH_8 PF14716.1 gi|336476206|ref|YP_004615347.1| - 0.0082 16.3 2.1 0.034 14.3 0.1 2.9 2 1 1 3 3 3 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|336476206|ref|YP_004615347.1| - 0.016 15.1 0.3 0.15 12.0 0.0 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix motif AAA_19 PF13245.1 gi|336476206|ref|YP_004615347.1| - 0.073 12.8 0.0 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain DUF1870 PF08965.5 gi|336476206|ref|YP_004615347.1| - 0.097 12.3 0.0 0.27 10.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1870) DUF2775 PF10950.3 gi|336476206|ref|YP_004615347.1| - 0.2 11.8 2.4 0.72 10.0 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2775) tRNA-synt_2b PF00587.20 gi|336476207|ref|YP_004615348.1| - 5.5e-57 192.1 0.1 9.6e-57 191.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336476207|ref|YP_004615348.1| - 9.1e-21 73.6 2.8 5.1e-20 71.2 0.0 3.3 4 0 0 4 4 4 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|336476207|ref|YP_004615348.1| - 0.0093 14.7 0.1 2 7.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) Zn-ribbon_8 PF09723.5 gi|336476207|ref|YP_004615348.1| - 0.38 10.7 4.5 4.5 7.2 0.0 2.9 3 0 0 3 3 3 0 Zinc ribbon domain STAS PF01740.16 gi|336476208|ref|YP_004615349.1| - 0.042 13.2 0.0 0.13 11.7 0.0 1.8 1 1 0 1 1 1 0 STAS domain DeoC PF01791.4 gi|336476209|ref|YP_004615350.1| - 6.3e-54 182.7 0.0 7.3e-54 182.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|336476209|ref|YP_004615350.1| - 0.00028 20.3 0.3 0.00036 19.9 0.2 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|336476209|ref|YP_004615350.1| - 0.0025 16.9 0.0 2 7.5 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PEP_mutase PF13714.1 gi|336476209|ref|YP_004615350.1| - 0.046 12.9 0.4 2.1 7.5 0.0 2.4 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase Dus PF01207.12 gi|336476209|ref|YP_004615350.1| - 0.15 10.8 0.7 13 4.5 0.0 2.8 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) dUTPase PF00692.14 gi|336476210|ref|YP_004615351.1| - 2e-11 43.4 0.0 2.6e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|336476210|ref|YP_004615351.1| - 0.059 11.7 0.0 0.073 11.4 0.0 1.4 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF1610 PF07754.6 gi|336476211|ref|YP_004615352.1| - 0.11 12.6 0.2 0.11 12.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Desulfoferrod_N PF06397.7 gi|336476211|ref|YP_004615352.1| - 0.22 10.9 15.3 1.4e+02 1.9 10.6 2.7 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DUF702 PF05142.7 gi|336476211|ref|YP_004615352.1| - 6.3 6.9 9.4 7.2 6.7 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF702) DNA_RNApol_7kD PF03604.8 gi|336476211|ref|YP_004615352.1| - 8.4 5.9 9.8 1.1 8.8 0.3 2.8 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit CxxCxxCC PF03692.10 gi|336476212|ref|YP_004615353.1| - 3.3e-08 33.8 4.6 5.9e-08 33.0 3.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|336476212|ref|YP_004615353.1| - 0.16 11.4 3.0 5.7 6.4 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) RuBisCO_large PF00016.15 gi|336476213|ref|YP_004615354.1| - 2.9e-76 256.2 0.1 1.9e-57 194.4 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|336476213|ref|YP_004615354.1| - 1.1e-21 76.7 0.0 2.8e-21 75.4 0.0 1.6 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain AAA_22 PF13401.1 gi|336476214|ref|YP_004615355.1| - 5.7e-09 36.1 0.0 1.5e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336476214|ref|YP_004615355.1| - 4.8e-08 33.2 0.1 2e-07 31.1 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|336476214|ref|YP_004615355.1| - 5.6e-08 33.0 0.0 1.3e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|336476214|ref|YP_004615355.1| - 1.2e-06 28.1 1.7 9.4e-06 25.2 0.2 2.3 2 0 0 2 2 2 1 CDC6, C terminal AAA_17 PF13207.1 gi|336476214|ref|YP_004615355.1| - 1.6e-06 28.9 1.4 4e-06 27.6 0.2 2.3 1 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|336476214|ref|YP_004615355.1| - 3.2e-06 27.0 0.2 6.1e-06 26.0 0.2 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|336476214|ref|YP_004615355.1| - 4.3e-06 27.0 0.4 4.3e-06 27.0 0.3 2.7 1 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|336476214|ref|YP_004615355.1| - 1.3e-05 24.9 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|336476214|ref|YP_004615355.1| - 6e-05 22.9 0.6 0.00025 20.9 0.4 2.1 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|336476214|ref|YP_004615355.1| - 0.00016 20.6 0.1 0.00024 20.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.1 gi|336476214|ref|YP_004615355.1| - 0.00053 19.6 0.0 0.0017 18.0 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_24 PF13479.1 gi|336476214|ref|YP_004615355.1| - 0.0013 18.3 0.0 0.0029 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|336476214|ref|YP_004615355.1| - 0.0015 18.2 0.0 0.0035 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|336476214|ref|YP_004615355.1| - 0.0019 18.4 0.0 0.0061 16.8 0.0 1.8 1 1 0 1 1 1 1 ABC transporter DNA_pol3_delta2 PF13177.1 gi|336476214|ref|YP_004615355.1| - 0.0034 17.0 1.8 0.011 15.3 1.0 2.2 1 1 1 2 2 2 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.12 gi|336476214|ref|YP_004615355.1| - 0.0066 15.8 0.0 0.029 13.7 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein DEAD PF00270.24 gi|336476214|ref|YP_004615355.1| - 0.0076 15.7 0.0 0.022 14.2 0.0 1.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|336476214|ref|YP_004615355.1| - 0.014 14.8 0.0 0.037 13.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|336476214|ref|YP_004615355.1| - 0.016 14.2 0.0 0.037 13.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|336476214|ref|YP_004615355.1| - 0.016 15.3 0.0 0.051 13.7 0.0 2.0 1 1 0 1 1 1 0 RNA helicase PhoH PF02562.11 gi|336476214|ref|YP_004615355.1| - 0.019 14.2 0.0 0.04 13.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein T2SE PF00437.15 gi|336476214|ref|YP_004615355.1| - 0.023 13.6 0.2 0.062 12.1 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|336476214|ref|YP_004615355.1| - 0.023 14.1 0.1 0.2 11.1 0.0 2.5 2 1 0 3 3 3 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|336476214|ref|YP_004615355.1| - 0.027 14.0 0.0 0.06 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain DALR_1 PF05746.10 gi|336476214|ref|YP_004615355.1| - 0.039 13.9 3.1 1.1 9.1 0.0 3.0 2 1 0 2 2 2 0 DALR anticodon binding domain DUF2075 PF09848.4 gi|336476214|ref|YP_004615355.1| - 0.04 12.8 0.1 0.11 11.4 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|336476214|ref|YP_004615355.1| - 0.05 13.2 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|336476214|ref|YP_004615355.1| - 0.058 12.8 0.1 1.7 8.1 0.0 2.6 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|336476214|ref|YP_004615355.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|336476214|ref|YP_004615355.1| - 0.16 11.8 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DAO PF01266.19 gi|336476215|ref|YP_004615356.1| - 2.9e-16 59.3 0.0 1.8e-08 33.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336476215|ref|YP_004615356.1| - 2.7e-13 49.7 1.7 5.1e-11 42.2 0.1 2.8 2 1 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|336476215|ref|YP_004615356.1| - 1.8e-07 31.2 0.0 3.3e-07 30.3 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|336476215|ref|YP_004615356.1| - 2.2e-07 29.8 0.1 0.0014 17.3 0.0 2.7 2 1 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|336476215|ref|YP_004615356.1| - 4.3e-06 26.0 0.1 9e-06 25.0 0.1 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336476215|ref|YP_004615356.1| - 1.1e-05 24.6 0.0 2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|336476215|ref|YP_004615356.1| - 1.8e-05 23.7 0.0 2.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|336476215|ref|YP_004615356.1| - 2.5e-05 22.9 0.0 0.00019 20.0 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|336476215|ref|YP_004615356.1| - 7.9e-05 21.6 0.0 0.00017 20.6 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|336476215|ref|YP_004615356.1| - 0.00012 21.1 0.0 0.0021 17.0 0.0 2.2 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|336476215|ref|YP_004615356.1| - 0.00025 21.0 0.8 0.0034 17.3 0.0 2.8 4 0 0 4 4 2 1 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|336476215|ref|YP_004615356.1| - 0.073 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 ThiF family Pyr_redox PF00070.22 gi|336476215|ref|YP_004615356.1| - 0.093 13.1 0.0 5.8 7.3 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HhH-GPD PF00730.20 gi|336476216|ref|YP_004615357.1| - 2.3e-23 82.5 0.0 2.9e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|336476216|ref|YP_004615357.1| - 9.2e-08 31.3 0.0 2.6e-07 29.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|336476216|ref|YP_004615357.1| - 0.013 15.2 0.1 0.08 12.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) EndIII_4Fe-2S PF10576.4 gi|336476216|ref|YP_004615357.1| - 0.014 15.5 4.2 0.14 12.3 2.9 2.3 1 1 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.2 gi|336476216|ref|YP_004615357.1| - 0.023 14.5 0.0 4.5 7.2 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336476216|ref|YP_004615357.1| - 0.13 12.4 0.1 0.35 11.0 0.1 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain Fae PF08714.6 gi|336476217|ref|YP_004615358.1| - 1.4e-72 242.5 0.4 3.2e-72 241.4 0.3 1.6 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|336476217|ref|YP_004615358.1| - 4.9e-27 94.7 0.4 1e-26 93.7 0.1 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|336476217|ref|YP_004615358.1| - 2.4e-06 26.7 0.3 1.4e-05 24.2 0.2 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|336476217|ref|YP_004615358.1| - 0.00014 21.2 0.7 0.00091 18.5 0.1 2.1 2 0 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|336476217|ref|YP_004615358.1| - 0.0007 19.1 0.1 0.0018 17.8 0.0 1.7 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.12 gi|336476217|ref|YP_004615358.1| - 0.036 13.1 0.4 0.18 10.9 0.1 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|336476217|ref|YP_004615358.1| - 0.086 11.6 0.1 0.086 11.6 0.0 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF2680 PF10925.3 gi|336476217|ref|YP_004615358.1| - 0.13 12.1 0.1 0.35 10.7 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) TIM PF00121.13 gi|336476218|ref|YP_004615359.1| - 9.5e-29 100.1 0.1 1.9e-26 92.6 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.10 gi|336476218|ref|YP_004615359.1| - 0.00026 20.2 1.7 0.00026 20.2 1.2 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|336476218|ref|YP_004615359.1| - 0.00061 18.9 0.2 0.00061 18.9 0.2 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.1 gi|336476218|ref|YP_004615359.1| - 0.037 13.7 0.2 11 5.7 0.0 2.4 2 0 0 2 2 2 0 HAD-hyrolase-like IGPS PF00218.16 gi|336476218|ref|YP_004615359.1| - 0.081 11.9 0.0 0.17 10.9 0.0 1.6 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|336476218|ref|YP_004615359.1| - 0.12 11.1 1.4 0.28 9.9 0.3 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PDH PF02153.12 gi|336476219|ref|YP_004615360.1| - 1.2e-54 184.9 0.0 1.9e-54 184.3 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|336476219|ref|YP_004615360.1| - 7.4e-09 35.6 0.0 1.5e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336476219|ref|YP_004615360.1| - 2.2e-08 33.4 0.0 4.2e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336476219|ref|YP_004615360.1| - 2.2e-07 31.2 0.0 4.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|336476219|ref|YP_004615360.1| - 2.8e-05 23.9 0.9 0.0015 18.3 0.7 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|336476219|ref|YP_004615360.1| - 0.00021 20.6 0.0 0.00038 19.8 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|336476219|ref|YP_004615360.1| - 0.011 16.2 0.0 0.069 13.6 0.0 2.2 2 0 0 2 2 2 0 CoA binding domain ApbA PF02558.11 gi|336476219|ref|YP_004615360.1| - 0.012 15.0 0.0 0.032 13.6 0.0 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|336476219|ref|YP_004615360.1| - 0.016 14.8 0.1 2.1 7.9 0.0 2.3 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336476219|ref|YP_004615360.1| - 0.084 13.4 0.0 0.21 12.1 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NmrA PF05368.8 gi|336476219|ref|YP_004615360.1| - 0.095 11.9 0.1 0.32 10.1 0.0 2.0 2 1 0 2 2 2 0 NmrA-like family NAD_binding_10 PF13460.1 gi|336476219|ref|YP_004615360.1| - 0.1 12.6 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 NADH(P)-binding Shikimate_dh_N PF08501.6 gi|336476220|ref|YP_004615361.1| - 1.4e-26 92.3 0.1 6.5e-26 90.2 0.0 2.1 3 0 0 3 3 3 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|336476220|ref|YP_004615361.1| - 4.6e-19 68.8 0.2 7.7e-19 68.1 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|336476220|ref|YP_004615361.1| - 1.1e-05 25.7 0.3 1.9e-05 24.9 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|336476220|ref|YP_004615361.1| - 1.4e-05 24.3 0.3 2e-05 23.7 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336476220|ref|YP_004615361.1| - 0.00059 19.0 0.1 0.00098 18.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|336476220|ref|YP_004615361.1| - 0.00075 18.5 0.2 0.91 8.5 0.0 2.3 1 1 1 2 2 2 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.1 gi|336476220|ref|YP_004615361.1| - 0.00089 19.4 0.1 0.0014 18.8 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|336476220|ref|YP_004615361.1| - 0.0015 18.5 0.8 0.0024 17.8 0.6 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|336476220|ref|YP_004615361.1| - 0.0075 16.2 0.2 0.021 14.8 0.1 1.8 2 0 0 2 2 2 1 NADH(P)-binding IlvN PF07991.7 gi|336476220|ref|YP_004615361.1| - 0.0094 15.3 1.2 0.017 14.5 0.3 1.9 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|336476220|ref|YP_004615361.1| - 0.014 15.2 0.3 0.021 14.6 0.2 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|336476220|ref|YP_004615361.1| - 0.041 13.8 0.2 0.069 13.0 0.2 1.5 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.11 gi|336476220|ref|YP_004615361.1| - 0.046 13.1 0.1 0.08 12.3 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|336476220|ref|YP_004615361.1| - 0.092 12.3 0.4 0.14 11.8 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|336476220|ref|YP_004615361.1| - 0.28 10.9 1.4 2.2 8.1 0.3 2.3 1 1 1 2 2 2 0 ThiF family DHquinase_I PF01487.10 gi|336476221|ref|YP_004615362.1| - 5.4e-59 199.5 0.2 6e-59 199.4 0.1 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQS PF01959.11 gi|336476222|ref|YP_004615363.1| - 4e-154 512.5 4.7 4.5e-154 512.3 3.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|336476222|ref|YP_004615363.1| - 0.0028 17.5 0.1 1.4 8.8 0.0 2.4 2 0 0 2 2 2 2 Opacity-associated protein A LysM-like domain QRPTase_C PF01729.14 gi|336476222|ref|YP_004615363.1| - 0.023 14.2 3.0 0.34 10.4 0.0 3.2 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF3332 PF11810.3 gi|336476222|ref|YP_004615363.1| - 0.096 12.3 0.1 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3332) DeoC PF01791.4 gi|336476223|ref|YP_004615364.1| - 1.9e-56 191.0 0.0 2.2e-56 190.7 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|336476223|ref|YP_004615364.1| - 0.021 14.2 0.1 0.034 13.5 0.1 1.3 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PucR PF07905.6 gi|336476223|ref|YP_004615364.1| - 0.027 14.0 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family DUF561 PF04481.7 gi|336476223|ref|YP_004615364.1| - 0.05 12.5 0.1 0.11 11.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) ThiG PF05690.9 gi|336476223|ref|YP_004615364.1| - 0.094 11.7 0.1 0.094 11.7 0.1 2.2 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|336476223|ref|YP_004615364.1| - 0.48 9.1 3.3 8.9 5.0 0.2 2.7 2 2 0 2 2 2 0 Dihydrouridine synthase (Dus) KaiC PF06745.8 gi|336476224|ref|YP_004615365.1| - 2.6e-81 272.0 2.3 2.2e-49 167.6 0.7 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|336476224|ref|YP_004615365.1| - 2.1e-13 50.1 0.0 1.3e-05 24.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|336476224|ref|YP_004615365.1| - 7.4e-08 32.0 0.0 0.0017 18.1 0.0 3.1 4 0 0 4 4 4 2 Part of AAA domain GvpD PF07088.6 gi|336476224|ref|YP_004615365.1| - 2.9e-07 29.1 1.1 0.013 13.9 0.0 3.0 2 1 1 3 3 3 2 GvpD gas vesicle protein DnaB_C PF03796.10 gi|336476224|ref|YP_004615365.1| - 5.9e-05 22.0 0.1 0.038 12.8 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|336476224|ref|YP_004615365.1| - 0.0001 21.4 0.1 0.13 11.2 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) RecA PF00154.16 gi|336476224|ref|YP_004615365.1| - 0.00016 20.8 1.1 0.39 9.7 0.0 3.0 3 0 0 3 3 3 2 recA bacterial DNA recombination protein T2SE PF00437.15 gi|336476224|ref|YP_004615365.1| - 0.00046 19.1 1.5 0.064 12.1 0.0 2.4 2 1 0 2 2 2 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|336476224|ref|YP_004615365.1| - 0.00097 18.6 0.0 0.12 11.8 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Rad51 PF08423.6 gi|336476224|ref|YP_004615365.1| - 0.0013 17.6 0.3 0.67 8.8 0.0 2.6 2 0 0 2 2 2 2 Rad51 TrmB PF01978.14 gi|336476224|ref|YP_004615365.1| - 0.002 17.8 0.2 0.0062 16.2 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|336476224|ref|YP_004615365.1| - 0.0032 17.4 0.2 0.038 14.0 0.0 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain PhoH PF02562.11 gi|336476224|ref|YP_004615365.1| - 0.0054 15.9 0.3 2.9 7.0 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_30 PF13604.1 gi|336476224|ref|YP_004615365.1| - 0.0068 16.0 0.9 0.57 9.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|336476224|ref|YP_004615365.1| - 0.0073 15.8 0.2 2.1 7.8 0.0 3.1 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|336476224|ref|YP_004615365.1| - 0.0096 15.9 0.8 1.5 8.7 0.1 2.5 3 0 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336476224|ref|YP_004615365.1| - 0.015 15.4 0.1 5.8 7.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain TFIIE_alpha PF02002.12 gi|336476224|ref|YP_004615365.1| - 0.017 14.6 0.0 0.052 13.0 0.0 1.8 1 0 0 1 1 1 0 TFIIE alpha subunit NACHT PF05729.7 gi|336476224|ref|YP_004615365.1| - 0.018 14.7 0.3 6.5 6.3 0.0 2.7 3 0 0 3 3 2 0 NACHT domain DEAD PF00270.24 gi|336476224|ref|YP_004615365.1| - 0.019 14.4 0.6 3.8 6.9 0.0 3.0 2 2 0 2 2 2 0 DEAD/DEAH box helicase MarR_2 PF12802.2 gi|336476224|ref|YP_004615365.1| - 0.025 14.2 0.0 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Sulfolobus_pRN PF05584.6 gi|336476224|ref|YP_004615365.1| - 0.035 14.0 0.2 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein IstB_IS21 PF01695.12 gi|336476224|ref|YP_004615365.1| - 0.055 12.8 0.2 7.9 5.8 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_11 PF13086.1 gi|336476224|ref|YP_004615365.1| - 0.077 12.5 0.0 2 7.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|336476224|ref|YP_004615365.1| - 0.36 10.2 5.3 0.89 8.9 0.1 3.0 3 1 0 3 3 3 0 FtsK/SpoIIIE family UvrD-helicase PF00580.16 gi|336476224|ref|YP_004615365.1| - 1.2 8.4 4.8 1.6 7.9 0.6 2.5 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain GATase PF00117.23 gi|336476225|ref|YP_004615366.1| - 2.2e-36 125.1 0.0 2.5e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336476225|ref|YP_004615366.1| - 1.2e-09 37.9 0.7 3.1e-08 33.3 0.1 2.6 1 1 1 2 2 2 1 Peptidase C26 SRP54 PF00448.17 gi|336476226|ref|YP_004615367.1| - 3.1e-72 242.1 0.0 5.3e-72 241.3 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|336476226|ref|YP_004615367.1| - 1.1e-30 105.9 3.4 1.1e-30 105.9 2.3 2.9 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|336476226|ref|YP_004615367.1| - 8.5e-17 61.0 0.6 8.5e-17 61.0 0.4 2.5 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|336476226|ref|YP_004615367.1| - 2.2e-07 30.4 1.5 2.2e-06 27.2 0.5 2.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|336476226|ref|YP_004615367.1| - 1.8e-05 24.2 0.3 7.6e-05 22.2 0.2 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|336476226|ref|YP_004615367.1| - 2.5e-05 24.0 0.0 6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.13 gi|336476226|ref|YP_004615367.1| - 0.0004 19.5 0.0 0.00078 18.5 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase GTP_EFTU PF00009.22 gi|336476226|ref|YP_004615367.1| - 0.00046 19.6 0.2 0.0017 17.8 0.1 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_33 PF13671.1 gi|336476226|ref|YP_004615367.1| - 0.00058 19.7 0.1 0.0026 17.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336476226|ref|YP_004615367.1| - 0.0009 20.0 1.5 0.0051 17.6 1.0 2.3 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|336476226|ref|YP_004615367.1| - 0.0013 18.2 0.2 0.11 11.9 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|336476226|ref|YP_004615367.1| - 0.0021 17.1 0.0 0.005 15.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|336476226|ref|YP_004615367.1| - 0.0026 17.7 0.0 0.0056 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|336476226|ref|YP_004615367.1| - 0.005 16.4 0.1 0.042 13.3 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.15 gi|336476226|ref|YP_004615367.1| - 0.0067 16.0 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase ArgK PF03308.11 gi|336476226|ref|YP_004615367.1| - 0.0071 15.1 0.1 0.019 13.7 0.0 1.7 2 0 0 2 2 2 1 ArgK protein TrwB_AAD_bind PF10412.4 gi|336476226|ref|YP_004615367.1| - 0.011 14.3 0.0 0.021 13.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Thymidylate_kin PF02223.12 gi|336476226|ref|YP_004615367.1| - 0.012 14.9 0.5 0.043 13.1 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase LpxK PF02606.9 gi|336476226|ref|YP_004615367.1| - 0.012 14.5 0.1 0.023 13.6 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.5 gi|336476226|ref|YP_004615367.1| - 0.013 14.7 0.0 0.031 13.4 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|336476226|ref|YP_004615367.1| - 0.016 15.3 0.1 0.072 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|336476226|ref|YP_004615367.1| - 0.03 13.0 0.5 0.13 10.9 0.3 2.1 1 1 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.1 gi|336476226|ref|YP_004615367.1| - 0.036 14.3 1.8 0.079 13.2 0.3 2.3 2 1 0 2 2 1 0 AAA domain TFIIA_gamma_N PF02268.11 gi|336476226|ref|YP_004615367.1| - 0.04 13.5 0.8 0.096 12.2 0.1 2.0 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain AAA_28 PF13521.1 gi|336476226|ref|YP_004615367.1| - 0.041 13.8 0.1 0.26 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|336476226|ref|YP_004615367.1| - 0.052 12.9 0.4 0.094 12.1 0.3 1.7 1 1 0 1 1 1 0 AAA-like domain SMC_N PF02463.14 gi|336476226|ref|YP_004615367.1| - 0.16 11.1 0.3 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Pribosyltran PF00156.22 gi|336476227|ref|YP_004615368.1| - 8.3e-19 67.5 0.0 1.2e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336476227|ref|YP_004615368.1| - 0.089 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.15 gi|336476228|ref|YP_004615369.1| - 7.3e-42 142.9 0.0 8.4e-42 142.7 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HEAT_2 PF13646.1 gi|336476229|ref|YP_004615370.1| - 5.6e-144 468.8 44.4 1.1e-19 70.4 0.2 13.9 1 1 10 13 13 13 13 HEAT repeats HEAT_PBS PF03130.11 gi|336476229|ref|YP_004615370.1| - 7.8e-79 252.2 16.2 0.00019 21.5 0.0 23.1 24 0 0 24 24 23 14 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|336476229|ref|YP_004615370.1| - 3.3e-65 210.3 10.1 0.0043 17.0 0.0 21.0 22 0 0 22 22 21 15 HEAT repeat HEAT_EZ PF13513.1 gi|336476229|ref|YP_004615370.1| - 3.6e-53 176.8 48.1 8.2e-05 22.9 0.6 21.1 19 4 3 22 22 22 14 HEAT-like repeat Arm PF00514.18 gi|336476229|ref|YP_004615370.1| - 1.1e-27 94.8 1.9 0.18 11.6 0.0 16.6 14 5 7 21 21 21 4 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|336476229|ref|YP_004615370.1| - 4.7e-17 62.1 0.5 0.08 13.3 0.0 13.2 4 4 8 12 12 12 1 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|336476229|ref|YP_004615370.1| - 9.9e-11 41.6 3.0 7.3 6.3 0.0 11.5 4 2 12 17 17 17 1 Aconitate B N-terminal domain Adaptin_N PF01602.15 gi|336476229|ref|YP_004615370.1| - 1.1e-09 37.1 3.6 0.0099 14.2 0.1 6.6 2 2 1 4 4 4 2 Adaptin N terminal region Cnd1 PF12717.2 gi|336476229|ref|YP_004615370.1| - 2.9e-08 33.7 5.1 0.029 14.2 0.0 9.3 7 3 5 12 12 11 1 non-SMC mitotic condensation complex subunit 1 RICTOR_V PF14668.1 gi|336476229|ref|YP_004615370.1| - 0.0013 18.6 0.0 0.33 10.9 0.0 4.7 5 0 0 5 5 5 1 Rapamycin-insensitive companion of mTOR, domain 5 UCR_Fe-S_N PF10399.4 gi|336476229|ref|YP_004615370.1| - 0.0044 16.1 0.0 6.3 6.0 0.0 5.8 7 0 0 7 7 7 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IFRD PF05004.8 gi|336476229|ref|YP_004615370.1| - 0.018 14.1 1.2 1.3 7.9 0.0 3.9 3 1 0 3 3 3 0 Interferon-related developmental regulator (IFRD) Matrix PF00661.16 gi|336476229|ref|YP_004615370.1| - 0.12 10.6 0.0 0.8 7.9 0.0 2.3 3 0 0 3 3 3 0 Viral matrix protein ALF PF03752.8 gi|336476229|ref|YP_004615370.1| - 2.2 8.2 14.2 21 5.0 0.0 6.5 8 0 0 8 8 8 0 Short repeats of unknown function HTH_3 PF01381.17 gi|336476230|ref|YP_004615371.1| - 2.3e-06 27.3 0.0 5.2e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.1 gi|336476230|ref|YP_004615371.1| - 0.00012 22.2 0.0 0.00026 21.1 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.2 gi|336476230|ref|YP_004615371.1| - 0.00091 19.2 0.1 0.0029 17.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain PrpR_N PF06506.6 gi|336476230|ref|YP_004615371.1| - 0.012 15.0 0.7 0.029 13.7 0.4 1.7 1 1 0 1 1 1 0 Propionate catabolism activator NMT1_2 PF13379.1 gi|336476231|ref|YP_004615372.1| - 3.5e-47 160.8 0.0 4.6e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|336476231|ref|YP_004615372.1| - 9.3e-23 80.9 0.0 1.6e-22 80.1 0.0 1.4 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|336476231|ref|YP_004615372.1| - 3.9e-08 32.9 0.0 5.8e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|336476231|ref|YP_004615372.1| - 0.0013 17.9 0.0 0.0022 17.1 0.0 1.4 1 0 0 1 1 1 1 LysR substrate binding domain SBP_bac_3 PF00497.15 gi|336476231|ref|YP_004615372.1| - 0.0047 16.1 0.0 0.013 14.8 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_7 PF03480.8 gi|336476231|ref|YP_004615372.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF1446 PF07287.6 gi|336476231|ref|YP_004615372.1| - 0.064 11.7 0.1 0.089 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1446) LPAM_1 PF08139.7 gi|336476231|ref|YP_004615372.1| - 0.096 12.9 1.7 0.19 12.0 1.2 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.17 gi|336476232|ref|YP_004615373.1| - 5.5e-21 74.9 9.1 5.5e-21 74.9 6.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336476233|ref|YP_004615374.1| - 5e-33 114.3 0.0 7.8e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476233|ref|YP_004615374.1| - 8e-12 45.7 0.0 4.4e-06 26.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA PF00004.24 gi|336476233|ref|YP_004615374.1| - 9.1e-07 29.1 2.0 9.2e-06 25.8 0.4 2.8 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|336476233|ref|YP_004615374.1| - 1.9e-06 27.2 0.0 0.00036 19.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|336476233|ref|YP_004615374.1| - 5.8e-06 26.4 0.1 5.9e-05 23.1 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|336476233|ref|YP_004615374.1| - 4e-05 24.4 0.6 0.0026 18.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|336476233|ref|YP_004615374.1| - 9.5e-05 22.5 0.4 0.00046 20.3 0.1 2.1 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|336476233|ref|YP_004615374.1| - 0.00084 18.5 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|336476233|ref|YP_004615374.1| - 0.0018 18.1 0.0 0.0053 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336476233|ref|YP_004615374.1| - 0.0028 17.6 1.0 0.014 15.4 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|336476233|ref|YP_004615374.1| - 0.0031 17.2 0.1 0.0089 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|336476233|ref|YP_004615374.1| - 0.0073 15.4 0.0 0.022 13.9 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|336476233|ref|YP_004615374.1| - 0.0078 15.8 0.2 0.022 14.3 0.1 1.8 2 0 0 2 2 1 1 NACHT domain Arch_ATPase PF01637.13 gi|336476233|ref|YP_004615374.1| - 0.0081 15.8 0.0 0.034 13.8 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|336476233|ref|YP_004615374.1| - 0.0091 16.3 0.0 0.028 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|336476233|ref|YP_004615374.1| - 0.0093 15.3 0.6 0.052 12.9 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_10 PF12846.2 gi|336476233|ref|YP_004615374.1| - 0.015 14.7 0.2 0.55 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|336476233|ref|YP_004615374.1| - 0.021 14.3 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|336476233|ref|YP_004615374.1| - 0.025 13.7 0.0 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.4 gi|336476233|ref|YP_004615374.1| - 0.026 14.0 0.0 0.064 12.7 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.1 gi|336476233|ref|YP_004615374.1| - 0.027 14.3 0.0 0.055 13.4 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|336476233|ref|YP_004615374.1| - 0.029 14.2 0.0 0.092 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|336476233|ref|YP_004615374.1| - 0.043 13.3 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|336476233|ref|YP_004615374.1| - 0.045 12.6 0.3 0.16 10.8 0.0 2.0 3 0 0 3 3 3 0 NB-ARC domain UPF0079 PF02367.12 gi|336476233|ref|YP_004615374.1| - 0.047 13.3 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|336476233|ref|YP_004615374.1| - 0.059 12.0 0.1 0.086 11.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|336476233|ref|YP_004615374.1| - 0.064 13.7 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|336476233|ref|YP_004615374.1| - 0.064 13.5 0.2 0.15 12.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|336476233|ref|YP_004615374.1| - 0.065 12.9 0.9 0.11 12.2 0.0 1.9 3 0 0 3 3 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|336476233|ref|YP_004615374.1| - 0.066 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|336476233|ref|YP_004615374.1| - 0.07 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|336476233|ref|YP_004615374.1| - 0.1 11.1 0.1 1.3 7.5 0.0 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class T4SS-DNA_transf PF02534.9 gi|336476233|ref|YP_004615374.1| - 0.14 10.6 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Bactofilin PF04519.8 gi|336476234|ref|YP_004615375.1| - 0.0048 16.8 1.4 0.011 15.7 0.3 1.9 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|336476234|ref|YP_004615375.1| - 0.036 13.5 0.1 4.3 7.0 0.0 3.4 3 1 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Prenyltrans_2 PF13249.1 gi|336476235|ref|YP_004615376.1| - 3.8e-07 30.5 5.1 8.3e-05 22.9 0.4 2.7 1 1 1 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|336476235|ref|YP_004615376.1| - 2.1e-05 24.4 2.0 0.0014 18.6 1.4 2.6 1 1 0 1 1 1 1 Prenyltransferase-like A2M_comp PF07678.9 gi|336476235|ref|YP_004615376.1| - 0.008 15.4 2.0 0.039 13.1 0.3 2.4 2 1 0 2 2 2 1 A-macroglobulin complement component Prenyltrans PF00432.16 gi|336476235|ref|YP_004615376.1| - 1.6 8.3 5.8 2.1 7.9 0.1 2.9 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat NRDD PF13597.1 gi|336476236|ref|YP_004615377.1| - 6e-151 503.2 0.0 6.8e-151 503.0 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Ribosomal_L31 PF01197.13 gi|336476236|ref|YP_004615377.1| - 0.11 12.4 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L31 ParA PF10609.4 gi|336476237|ref|YP_004615378.1| - 4.3e-31 106.6 0.1 9.9e-31 105.4 0.1 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|336476237|ref|YP_004615378.1| - 1.6e-20 73.3 0.0 2.2e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336476237|ref|YP_004615378.1| - 3e-12 46.7 0.0 4.5e-07 29.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|336476237|ref|YP_004615378.1| - 2.7e-09 36.4 0.0 4e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|336476237|ref|YP_004615378.1| - 5.7e-07 28.9 0.1 0.024 13.8 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|336476237|ref|YP_004615378.1| - 7.1e-07 28.5 0.8 2.5e-06 26.7 0.3 2.0 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|336476237|ref|YP_004615378.1| - 2.3e-06 27.3 0.9 0.011 15.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain APS_kinase PF01583.15 gi|336476237|ref|YP_004615378.1| - 8e-05 22.3 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF258 PF03193.11 gi|336476237|ref|YP_004615378.1| - 0.00011 21.3 0.1 0.0002 20.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|336476237|ref|YP_004615378.1| - 0.002 18.9 0.0 0.0035 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|336476237|ref|YP_004615378.1| - 0.0025 16.6 0.1 0.0087 14.8 0.0 1.7 2 0 0 2 2 2 1 ArgK protein SRP54 PF00448.17 gi|336476237|ref|YP_004615378.1| - 0.0041 16.5 0.1 0.013 14.9 0.1 1.8 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain VirC1 PF07015.6 gi|336476237|ref|YP_004615378.1| - 0.005 15.9 0.0 0.0084 15.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MobB PF03205.9 gi|336476237|ref|YP_004615378.1| - 0.0069 16.0 0.1 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|336476237|ref|YP_004615378.1| - 0.0077 16.3 0.1 0.025 14.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336476237|ref|YP_004615378.1| - 0.0094 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|336476237|ref|YP_004615378.1| - 0.0095 15.3 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336476237|ref|YP_004615378.1| - 0.013 15.2 0.7 0.13 12.0 0.0 2.3 2 1 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|336476237|ref|YP_004615378.1| - 0.015 15.6 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|336476237|ref|YP_004615378.1| - 0.018 15.0 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|336476237|ref|YP_004615378.1| - 0.022 14.9 0.0 0.054 13.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.10 gi|336476237|ref|YP_004615378.1| - 0.026 13.2 0.0 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein T2SE PF00437.15 gi|336476237|ref|YP_004615378.1| - 0.035 13.0 0.1 0.065 12.1 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|336476237|ref|YP_004615378.1| - 0.035 13.3 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|336476237|ref|YP_004615378.1| - 0.044 13.5 0.0 0.088 12.5 0.0 1.4 1 0 0 1 1 1 0 NTPase NACHT PF05729.7 gi|336476237|ref|YP_004615378.1| - 0.045 13.4 0.2 0.074 12.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|336476237|ref|YP_004615378.1| - 0.06 12.4 0.8 0.093 11.8 0.1 1.7 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|336476237|ref|YP_004615378.1| - 0.063 12.1 0.1 0.097 11.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.12 gi|336476237|ref|YP_004615378.1| - 0.087 12.2 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|336476237|ref|YP_004615378.1| - 0.16 11.5 0.1 0.31 10.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF21 PF01595.15 gi|336476238|ref|YP_004615379.1| - 1.5e-35 122.1 2.7 1.9e-35 121.7 1.9 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 DUF21 PF01595.15 gi|336476239|ref|YP_004615380.1| - 4.3e-34 117.3 6.1 5.9e-34 116.9 4.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 AIRS PF00586.19 gi|336476240|ref|YP_004615381.1| - 3.4e-21 75.3 1.5 7.1e-21 74.2 1.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|336476240|ref|YP_004615381.1| - 3.6e-10 40.0 0.0 5.8e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.6 gi|336476241|ref|YP_004615382.1| - 3.4e-149 495.1 23.2 2.8e-75 252.8 3.8 2.8 3 0 0 3 3 3 2 S-layer protein CBM_X2 PF03442.9 gi|336476241|ref|YP_004615382.1| - 1.9e-37 126.9 24.9 6.6e-13 48.2 3.4 4.2 3 0 0 3 3 3 3 Carbohydrate binding domain X2 CARDB PF07705.6 gi|336476241|ref|YP_004615382.1| - 1e-08 35.1 0.6 1e-08 35.1 0.4 4.2 2 1 3 5 5 5 1 CARDB CarboxypepD_reg PF13620.1 gi|336476241|ref|YP_004615382.1| - 3.8e-05 23.6 2.9 0.023 14.7 0.5 4.0 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|336476241|ref|YP_004615382.1| - 0.0012 18.5 1.0 0.53 10.1 0.0 3.2 2 0 0 2 2 2 1 PEGA domain tRNA-synt_1c_C PF03950.13 gi|336476241|ref|YP_004615382.1| - 0.04 13.5 2.8 4.2 7.0 0.0 3.8 4 0 0 4 4 4 0 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2606 PF10794.4 gi|336476241|ref|YP_004615382.1| - 0.057 12.8 0.6 1.1 8.6 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2606) TRAP_beta PF05753.9 gi|336476241|ref|YP_004615382.1| - 0.12 11.5 3.7 13 4.8 0.0 4.2 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) TrbC PF04956.8 gi|336476241|ref|YP_004615382.1| - 1.5 8.9 4.3 9.6 6.2 0.1 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family Peroxin-22 PF12827.2 gi|336476241|ref|YP_004615382.1| - 3.7 7.2 8.7 19 4.9 0.3 3.2 3 0 0 3 3 3 0 Peroxisomal biogenesis protein family Stap_Strp_toxin PF01123.15 gi|336476241|ref|YP_004615382.1| - 5.5 7.5 8.9 53 4.3 0.3 4.0 4 0 0 4 4 3 0 Staphylococcal/Streptococcal toxin, OB-fold domain Peptidase_MA_2 PF13485.1 gi|336476242|ref|YP_004615383.1| - 5.8e-08 32.8 0.9 1.1e-07 31.8 0.6 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M1 PF01433.15 gi|336476242|ref|YP_004615383.1| - 2.6e-06 26.7 0.2 1.2e-05 24.5 0.1 2.1 3 1 0 3 3 3 1 Peptidase family M1 Cupredoxin_1 PF13473.1 gi|336476242|ref|YP_004615383.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain DUF11 PF01345.13 gi|336476244|ref|YP_004615385.1| - 1.2e-14 54.1 9.1 1.9e-05 24.6 0.9 4.0 3 0 0 3 3 3 3 Domain of unknown function DUF11 A2M PF00207.17 gi|336476244|ref|YP_004615385.1| - 8.2e-06 25.3 0.0 0.81 9.3 0.0 3.4 3 0 0 3 3 3 2 Alpha-2-macroglobulin family YbbR PF07949.7 gi|336476244|ref|YP_004615385.1| - 0.022 14.8 8.2 1.8 8.7 0.1 4.3 2 2 0 3 3 3 0 YbbR-like protein DUF4440 PF14534.1 gi|336476244|ref|YP_004615385.1| - 0.025 14.7 0.7 55 4.0 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4440) Trs65 PF12735.2 gi|336476244|ref|YP_004615385.1| - 0.14 11.4 0.5 14 4.8 0.0 2.9 1 1 2 3 3 3 0 TRAPP trafficking subunit Trs65 Big_3_4 PF13754.1 gi|336476244|ref|YP_004615385.1| - 0.43 10.9 26.1 1 9.7 0.7 5.5 5 1 1 6 6 6 0 Bacterial Ig-like domain (group 3) Cadherin-like PF12733.2 gi|336476244|ref|YP_004615385.1| - 2.4 8.4 12.2 61 3.9 1.0 5.3 1 1 1 3 3 3 0 Cadherin-like beta sandwich domain Big_2 PF02368.13 gi|336476244|ref|YP_004615385.1| - 4.7 7.1 14.4 2.9 7.8 0.8 4.0 4 2 0 4 4 4 0 Bacterial Ig-like domain (group 2) S4 PF01479.20 gi|336476246|ref|YP_004615387.1| - 0.17 11.3 0.5 2.2 7.7 0.0 2.5 2 1 1 3 3 3 0 S4 domain HTH_45 PF14947.1 gi|336476247|ref|YP_004615388.1| - 1.6e-23 82.2 2.4 2e-23 81.9 1.7 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|336476247|ref|YP_004615388.1| - 0.00011 21.8 2.0 0.00051 19.7 1.4 1.8 1 1 0 1 1 1 1 Transcription factor MotA, activation domain DUF4364 PF14277.1 gi|336476247|ref|YP_004615388.1| - 0.0096 15.5 0.2 0.01 15.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF116 PF01976.12 gi|336476248|ref|YP_004615389.1| - 1.3e-05 24.6 0.3 1.8e-05 24.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF116 PF01976.12 gi|336476249|ref|YP_004615390.1| - 2.4e-06 27.1 0.1 3.7e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF116 HTH_33 PF13592.1 gi|336476249|ref|YP_004615390.1| - 0.084 12.4 0.0 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix TRAP_beta PF05753.9 gi|336476250|ref|YP_004615391.1| - 0.078 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Exosortase_EpsH PF09721.5 gi|336476251|ref|YP_004615392.1| - 1e-12 47.8 8.7 1.2e-12 47.5 6.0 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) zf-DHHC PF01529.15 gi|336476252|ref|YP_004615393.1| - 3.2 7.1 8.3 4.7 6.5 5.8 1.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase Ninjurin PF04923.7 gi|336476254|ref|YP_004615395.1| - 0.45 10.2 2.7 0.75 9.5 1.9 1.3 1 0 0 1 1 1 0 Ninjurin DUF1673 PF07895.6 gi|336476254|ref|YP_004615395.1| - 2.8 7.4 6.4 2.8 7.4 3.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) DUF11 PF01345.13 gi|336476255|ref|YP_004615396.1| - 2.3e-23 82.0 86.7 0.00011 22.1 3.5 7.9 7 0 0 7 7 7 7 Domain of unknown function DUF11 CARDB PF07705.6 gi|336476255|ref|YP_004615396.1| - 3e-19 68.9 37.9 0.0032 17.4 0.6 7.4 7 0 0 7 7 7 7 CARDB NPCBM_assoc PF10633.4 gi|336476255|ref|YP_004615396.1| - 1.1e-06 28.5 28.4 1 9.4 0.2 8.1 7 1 0 7 7 7 6 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1416 PF07210.7 gi|336476255|ref|YP_004615396.1| - 0.003 17.1 9.5 25 4.5 0.0 6.3 6 0 0 6 6 6 1 Protein of unknown function (DUF1416) TRAP_beta PF05753.9 gi|336476255|ref|YP_004615396.1| - 0.0082 15.3 38.3 4.5 6.3 0.2 8.1 7 1 0 7 7 7 6 Translocon-associated protein beta (TRAPB) Integrin_alpha2 PF08441.7 gi|336476255|ref|YP_004615396.1| - 0.27 10.0 5.2 94 1.6 0.0 5.3 7 0 0 7 7 7 0 Integrin alpha DUF2072 PF09845.4 gi|336476256|ref|YP_004615397.1| - 3.1e-42 143.5 0.1 4e-42 143.2 0.1 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) NKWYS PF10364.4 gi|336476256|ref|YP_004615397.1| - 0.11 12.1 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Putative capsular polysaccharide synthesis protein Spt4 PF06093.8 gi|336476256|ref|YP_004615397.1| - 0.17 11.8 0.7 0.39 10.6 0.3 1.7 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.1 gi|336476256|ref|YP_004615397.1| - 0.2 11.2 1.6 0.43 10.1 1.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336476256|ref|YP_004615397.1| - 0.23 10.6 2.3 1.9 7.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1624 PF07786.7 gi|336476257|ref|YP_004615398.1| - 1.7e-73 246.6 18.4 1.9e-73 246.4 12.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|336476257|ref|YP_004615398.1| - 2.5e-07 29.8 30.8 0.009 14.8 18.4 2.4 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|336476257|ref|YP_004615398.1| - 5.4e-07 28.6 12.0 1.2e-05 24.2 3.7 2.6 2 1 0 2 2 2 2 OpgC protein DPM3 PF08285.6 gi|336476257|ref|YP_004615398.1| - 0.0052 16.6 0.2 0.0052 16.6 0.2 2.3 2 1 1 3 3 3 1 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) IMS PF00817.15 gi|336476258|ref|YP_004615399.1| - 5.4e-49 165.8 0.2 1.3e-48 164.5 0.0 1.6 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.3 gi|336476258|ref|YP_004615399.1| - 6.8e-22 77.7 0.3 1.3e-21 76.8 0.2 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|336476258|ref|YP_004615399.1| - 1e-09 37.8 0.0 3.2e-09 36.2 0.0 1.9 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|336476258|ref|YP_004615399.1| - 0.0001 22.3 0.0 0.00024 21.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|336476258|ref|YP_004615399.1| - 0.00026 20.8 0.0 0.0008 19.2 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus TfoX_C PF04994.8 gi|336476258|ref|YP_004615399.1| - 0.056 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 TfoX C-terminal domain UbiA PF01040.13 gi|336476259|ref|YP_004615400.1| - 0.05 12.8 0.7 0.058 12.5 0.5 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF4199 PF13858.1 gi|336476259|ref|YP_004615400.1| - 0.19 11.6 5.8 0.098 12.5 2.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) Ribosomal_S17e PF00833.13 gi|336476260|ref|YP_004615401.1| - 9.9e-17 60.8 0.7 1e-16 60.7 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 PNPase PF03726.9 gi|336476260|ref|YP_004615401.1| - 0.13 12.5 0.4 0.15 12.3 0.2 1.2 1 0 0 1 1 1 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain DHDPS PF00701.17 gi|336476261|ref|YP_004615402.1| - 9.5e-101 336.1 0.0 1.1e-100 336.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DapB_C PF05173.9 gi|336476262|ref|YP_004615403.1| - 2e-50 169.9 0.9 3e-50 169.3 0.3 1.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|336476262|ref|YP_004615403.1| - 1.3e-31 109.1 1.4 1.3e-31 109.1 1.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|336476262|ref|YP_004615403.1| - 2e-05 24.9 0.2 3.9e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|336476262|ref|YP_004615403.1| - 0.044 13.7 0.3 0.1 12.5 0.1 1.6 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PyrI PF01948.13 gi|336476263|ref|YP_004615404.1| - 2.5e-33 113.9 2.9 3.7e-33 113.4 2.0 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|336476263|ref|YP_004615404.1| - 3.2e-17 61.6 6.3 3.2e-17 61.6 4.4 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.10 gi|336476263|ref|YP_004615404.1| - 0.17 11.6 1.4 0.42 10.4 1.0 1.7 1 0 0 1 1 1 0 BED zinc finger OTCace_N PF02729.16 gi|336476264|ref|YP_004615405.1| - 4.6e-48 162.4 0.0 3.3e-47 159.6 0.0 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|336476264|ref|YP_004615405.1| - 1.2e-36 125.9 0.0 1.7e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Methyltransf_6 PF03737.10 gi|336476265|ref|YP_004615406.1| - 1.3e-38 132.3 5.0 1.3e-38 132.3 3.4 1.8 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|336476265|ref|YP_004615406.1| - 3.4e-20 72.4 2.8 7.4e-20 71.3 1.9 1.6 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|336476265|ref|YP_004615406.1| - 7.2e-07 28.3 8.5 1e-05 24.6 1.3 2.4 2 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|336476265|ref|YP_004615406.1| - 1.6e-06 27.9 3.0 1.2e-05 25.1 0.2 2.4 1 1 1 2 2 2 1 HMGL-like ThiG PF05690.9 gi|336476265|ref|YP_004615406.1| - 3.3e-06 26.3 2.6 3.3e-06 26.3 1.8 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.1 gi|336476265|ref|YP_004615406.1| - 1.7e-05 24.1 0.4 0.0074 15.5 0.0 2.6 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.16 gi|336476265|ref|YP_004615406.1| - 3.2e-05 23.3 1.4 0.00041 19.7 0.1 2.7 1 1 1 2 2 2 1 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|336476265|ref|YP_004615406.1| - 5.1e-05 22.4 2.0 0.00033 19.8 0.6 2.6 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI DeoC PF01791.4 gi|336476265|ref|YP_004615406.1| - 0.00023 20.5 1.9 0.00064 19.0 1.0 2.0 1 1 0 1 1 1 1 DeoC/LacD family aldolase Trp_syntA PF00290.15 gi|336476265|ref|YP_004615406.1| - 0.0011 17.5 2.0 0.034 12.6 0.1 3.0 1 1 2 3 3 3 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|336476265|ref|YP_004615406.1| - 0.0011 18.2 8.6 0.0022 17.3 0.2 3.3 3 1 1 4 4 4 1 PcrB family Ribul_P_3_epim PF00834.14 gi|336476265|ref|YP_004615406.1| - 0.0025 16.9 1.7 0.018 14.1 1.2 2.4 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family IGPS PF00218.16 gi|336476265|ref|YP_004615406.1| - 0.0044 16.0 1.0 0.0078 15.2 0.7 1.4 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DUF561 PF04481.7 gi|336476265|ref|YP_004615406.1| - 0.033 13.1 3.9 0.067 12.1 0.2 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF561) FlpD PF02662.11 gi|336476265|ref|YP_004615406.1| - 0.06 13.0 2.8 1.3 8.6 0.0 2.9 3 0 0 3 3 3 0 Methyl-viologen-reducing hydrogenase, delta subunit Arc_PepC_II PF06847.6 gi|336476266|ref|YP_004615407.1| - 2.3e-23 82.4 0.0 2.3e-23 82.4 0.0 2.5 4 0 0 4 4 4 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|336476266|ref|YP_004615407.1| - 6.3e-13 48.8 10.4 6.3e-13 48.8 7.2 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family GMP_synt_C PF00958.17 gi|336476268|ref|YP_004615409.1| - 5.3e-28 96.5 0.0 1.1e-27 95.5 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|336476268|ref|YP_004615409.1| - 4e-11 42.2 0.0 3e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|336476268|ref|YP_004615409.1| - 0.0001 21.0 0.0 0.0084 14.7 0.0 2.4 3 0 0 3 3 3 2 tRNA methyl transferase QueC PF06508.8 gi|336476268|ref|YP_004615409.1| - 0.0022 17.2 0.0 0.0059 15.9 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.14 gi|336476268|ref|YP_004615409.1| - 0.0035 16.4 0.1 0.0081 15.2 0.0 1.6 2 0 0 2 2 2 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|336476268|ref|YP_004615409.1| - 0.0052 16.3 0.0 0.0087 15.5 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase ThiI PF02568.9 gi|336476268|ref|YP_004615409.1| - 0.016 14.6 0.0 0.052 13.0 0.0 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|336476268|ref|YP_004615409.1| - 0.064 13.0 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Radical_SAM PF04055.16 gi|336476269|ref|YP_004615410.1| - 2.2e-08 34.4 1.1 3.5e-08 33.7 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Rubredoxin PF00301.15 gi|336476269|ref|YP_004615410.1| - 0.013 15.3 1.6 0.031 14.1 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin AA_kinase PF00696.23 gi|336476270|ref|YP_004615411.1| - 3.7e-42 144.5 3.3 4.3e-42 144.3 2.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family MC1 PF05854.6 gi|336476271|ref|YP_004615412.1| - 6.8e-46 154.1 1.9 7.5e-46 154.0 1.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.9 gi|336476272|ref|YP_004615413.1| - 2.7e-89 299.0 6.5 3.1e-89 298.8 4.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 CDC37_C PF08564.5 gi|336476272|ref|YP_004615413.1| - 0.067 13.0 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Cdc37 C terminal domain HypA PF01155.14 gi|336476273|ref|YP_004615414.1| - 4.6e-05 23.0 0.4 4.6e-05 23.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|336476273|ref|YP_004615414.1| - 0.0002 21.0 1.3 0.00025 20.7 0.9 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|336476273|ref|YP_004615414.1| - 0.00057 19.6 2.6 0.00073 19.3 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_3 PF14369.1 gi|336476273|ref|YP_004615414.1| - 0.00063 19.6 0.4 1.1 9.3 0.1 2.2 2 0 0 2 2 2 2 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|336476273|ref|YP_004615414.1| - 0.0011 18.6 1.8 0.88 9.4 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336476273|ref|YP_004615414.1| - 0.0012 18.7 4.7 0.0044 16.9 3.3 1.8 1 1 0 1 1 1 1 Zinc ribbon domain TFIIS_C PF01096.13 gi|336476273|ref|YP_004615414.1| - 0.0013 18.3 3.1 0.16 11.6 0.2 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|336476273|ref|YP_004615414.1| - 0.0041 16.5 2.5 0.0069 15.8 1.7 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.7 gi|336476273|ref|YP_004615414.1| - 0.0089 15.7 0.7 0.01 15.5 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbons PHD PF00628.24 gi|336476273|ref|YP_004615414.1| - 0.013 15.1 0.9 0.11 12.1 0.1 2.1 2 0 0 2 2 2 0 PHD-finger DNA_ligase_ZBD PF03119.11 gi|336476273|ref|YP_004615414.1| - 0.014 15.1 0.3 0.014 15.1 0.2 1.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-H2C2_2 PF13465.1 gi|336476273|ref|YP_004615414.1| - 0.015 15.5 3.3 0.17 12.2 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain FYVE PF01363.16 gi|336476273|ref|YP_004615414.1| - 0.019 14.8 0.6 0.024 14.5 0.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger FYDLN_acid PF09538.5 gi|336476273|ref|YP_004615414.1| - 0.021 15.3 1.8 0.021 15.3 1.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_5 PF13719.1 gi|336476273|ref|YP_004615414.1| - 0.023 14.2 5.4 0.79 9.3 0.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|336476273|ref|YP_004615414.1| - 0.028 14.4 1.9 0.96 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RRN7 PF11781.3 gi|336476273|ref|YP_004615414.1| - 0.029 13.8 2.6 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|336476273|ref|YP_004615414.1| - 0.03 13.5 4.7 0.036 13.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336476273|ref|YP_004615414.1| - 0.037 13.7 6.4 0.83 9.3 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain GCC2_GCC3 PF07699.8 gi|336476273|ref|YP_004615414.1| - 0.069 12.7 3.4 0.094 12.3 2.3 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 Rubredoxin PF00301.15 gi|336476273|ref|YP_004615414.1| - 0.07 13.0 1.9 0.6 10.0 1.3 2.2 1 1 0 1 1 1 0 Rubredoxin Zn_Tnp_IS91 PF14319.1 gi|336476273|ref|YP_004615414.1| - 0.07 12.6 1.3 0.099 12.1 0.9 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C3HC4_3 PF13920.1 gi|336476273|ref|YP_004615414.1| - 0.087 12.5 1.2 0.12 12.0 0.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|336476273|ref|YP_004615414.1| - 0.11 12.3 2.3 0.15 11.8 1.6 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Elf1 PF05129.8 gi|336476273|ref|YP_004615414.1| - 0.11 12.1 2.7 1.2 8.8 0.2 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-IS66 PF13005.2 gi|336476273|ref|YP_004615414.1| - 0.13 12.3 3.0 2.4 8.2 0.0 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1 PF03811.8 gi|336476273|ref|YP_004615414.1| - 0.17 11.4 2.8 0.5 9.8 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C4_Topoisom PF01396.14 gi|336476273|ref|YP_004615414.1| - 0.17 11.3 3.5 1.5 8.3 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|336476273|ref|YP_004615414.1| - 0.2 12.0 1.8 1 9.7 0.1 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-HIT PF04438.11 gi|336476273|ref|YP_004615414.1| - 0.2 11.3 8.0 0.21 11.2 0.5 2.4 3 0 0 3 3 2 0 HIT zinc finger zf-Sec23_Sec24 PF04810.10 gi|336476273|ref|YP_004615414.1| - 0.2 11.2 3.5 6.1 6.5 0.1 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger TF_Zn_Ribbon PF08271.7 gi|336476273|ref|YP_004615414.1| - 0.26 10.6 4.0 1.1 8.5 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding YhfH PF14149.1 gi|336476273|ref|YP_004615414.1| - 0.33 10.7 3.7 9.7 6.0 0.4 2.2 2 0 0 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.6 gi|336476273|ref|YP_004615414.1| - 0.38 10.4 3.6 0.74 9.5 2.5 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF1178 PF06676.6 gi|336476273|ref|YP_004615414.1| - 0.56 10.4 2.5 1.3 9.1 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) C1_4 PF07975.7 gi|336476273|ref|YP_004615414.1| - 1.1 9.3 4.6 0.57 10.2 0.4 2.0 1 1 1 2 2 2 0 TFIIH C1-like domain Prim_Zn_Ribbon PF08273.7 gi|336476273|ref|YP_004615414.1| - 1.7 8.7 6.6 0.78 9.8 0.6 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF2072 PF09845.4 gi|336476273|ref|YP_004615414.1| - 2.3 8.1 5.5 3.2 7.6 2.5 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-C2H2 PF00096.21 gi|336476273|ref|YP_004615414.1| - 2.4 8.6 4.5 6.6 7.2 0.6 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|336476273|ref|YP_004615414.1| - 2.6 8.0 4.3 0.76 9.7 0.2 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|336476273|ref|YP_004615414.1| - 2.6 7.6 6.8 0.97 9.0 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-DNL PF05180.7 gi|336476273|ref|YP_004615414.1| - 5.4 6.8 5.8 72 3.2 4.1 2.1 1 1 0 1 1 1 0 DNL zinc finger DUF3797 PF12677.2 gi|336476273|ref|YP_004615414.1| - 9.3 5.9 10.4 2.6 7.7 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2098 PF09871.4 gi|336476275|ref|YP_004615416.1| - 2e-24 85.3 0.2 2.6e-24 84.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) HAS-barrel PF09378.5 gi|336476275|ref|YP_004615416.1| - 0.021 14.6 0.3 0.037 13.9 0.2 1.5 1 1 0 1 1 1 0 HAS barrel domain Peptidase_A21 PF03566.8 gi|336476275|ref|YP_004615416.1| - 0.06 11.4 0.0 0.062 11.3 0.0 1.0 1 0 0 1 1 1 0 Peptidase family A21 NTP_transf_2 PF01909.18 gi|336476276|ref|YP_004615417.1| - 5.3e-05 23.4 0.1 0.00018 21.8 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain Peptidase_M20 PF01546.23 gi|336476277|ref|YP_004615418.1| - 1.5e-23 83.2 0.0 1.9e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336476277|ref|YP_004615418.1| - 1.5e-08 34.3 0.0 3.2e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|336476277|ref|YP_004615418.1| - 0.024 14.3 0.0 0.066 12.9 0.0 1.6 2 0 0 2 2 2 0 Peptidase family M28 Acetyltransf_1 PF00583.19 gi|336476278|ref|YP_004615419.1| - 1.1e-10 41.4 0.0 1.7e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336476278|ref|YP_004615419.1| - 2.6e-10 40.2 0.1 4.2e-10 39.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336476278|ref|YP_004615419.1| - 0.00044 20.2 0.3 0.00082 19.3 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336476278|ref|YP_004615419.1| - 0.00062 19.6 0.0 0.0016 18.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336476278|ref|YP_004615419.1| - 0.00089 19.3 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Cobl PF09469.5 gi|336476278|ref|YP_004615419.1| - 0.014 15.3 0.1 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain Acetyltransf_CG PF14542.1 gi|336476278|ref|YP_004615419.1| - 0.046 13.5 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3354 PF11834.3 gi|336476278|ref|YP_004615419.1| - 0.081 12.5 0.4 2 8.0 0.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF3354) Acetyltransf_3 PF13302.1 gi|336476278|ref|YP_004615419.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336476279|ref|YP_004615420.1| - 3.5e-14 52.5 0.0 9.7e-14 51.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336476279|ref|YP_004615420.1| - 5.8e-10 39.2 0.0 9.6e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336476279|ref|YP_004615420.1| - 2.7e-09 37.1 0.0 3.5e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336476279|ref|YP_004615420.1| - 1.2e-06 28.6 0.0 1.6e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336476279|ref|YP_004615420.1| - 1.2e-05 25.2 0.0 1.5e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336476279|ref|YP_004615420.1| - 0.00089 19.1 0.0 0.0014 18.5 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336476279|ref|YP_004615420.1| - 0.0017 18.2 0.0 0.0025 17.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336476279|ref|YP_004615420.1| - 0.026 14.2 0.0 0.05 13.3 0.0 1.4 1 1 0 1 1 1 0 FR47-like protein MtmB PF05369.7 gi|336476280|ref|YP_004615421.1| - 6.9e-79 265.1 0.0 8.8e-79 264.7 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MFS_1 PF07690.11 gi|336476281|ref|YP_004615422.1| - 2.5e-27 95.5 95.3 2.2e-22 79.2 36.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3464 PF11947.3 gi|336476281|ref|YP_004615422.1| - 0.14 11.6 1.4 0.29 10.5 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) CCG PF02754.11 gi|336476282|ref|YP_004615423.1| - 1.4e-36 124.3 2.6 9.5e-20 70.3 0.2 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Prok-RING_4 PF14447.1 gi|336476282|ref|YP_004615423.1| - 0.16 11.5 0.1 0.16 11.5 0.1 2.4 3 0 0 3 3 3 0 Prokaryotic RING finger family 4 Fer4_8 PF13183.1 gi|336476283|ref|YP_004615424.1| - 3.1e-13 49.5 9.5 5.1e-13 48.8 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476283|ref|YP_004615424.1| - 2.8e-09 37.2 10.5 4.8e-09 36.4 7.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476283|ref|YP_004615424.1| - 1.6e-08 34.6 8.1 3.8e-08 33.4 5.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476283|ref|YP_004615424.1| - 2.6e-07 30.3 9.1 5e-07 29.4 6.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336476283|ref|YP_004615424.1| - 8e-07 29.3 22.8 6.1e-06 26.5 8.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476283|ref|YP_004615424.1| - 6.2e-06 25.8 10.7 0.0031 17.3 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336476283|ref|YP_004615424.1| - 7.3e-06 25.7 6.1 1.3e-05 24.9 4.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476283|ref|YP_004615424.1| - 3e-05 23.4 11.9 0.0011 18.4 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336476283|ref|YP_004615424.1| - 0.00058 20.2 14.6 0.006 16.9 1.5 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|336476283|ref|YP_004615424.1| - 0.0021 17.6 5.9 0.019 14.5 0.3 2.2 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|336476283|ref|YP_004615424.1| - 0.0077 16.7 5.2 0.45 11.1 0.7 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|336476283|ref|YP_004615424.1| - 0.026 14.8 14.0 0.031 14.6 2.1 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336476283|ref|YP_004615424.1| - 0.06 13.9 15.6 0.28 11.8 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336476283|ref|YP_004615424.1| - 0.07 13.5 8.8 1.7 9.0 1.6 2.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|336476283|ref|YP_004615424.1| - 0.081 13.6 14.3 2.9 8.7 10.1 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Mig-14 PF07395.6 gi|336476283|ref|YP_004615424.1| - 0.12 11.3 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 Mig-14 Fer4_6 PF12837.2 gi|336476283|ref|YP_004615424.1| - 1.6 8.7 12.6 0.31 11.0 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF3375 PF11855.3 gi|336476285|ref|YP_004615426.1| - 2.4e-06 26.5 6.4 0.0011 17.8 0.9 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3375) HTH_Tnp_Tc3_1 PF11427.3 gi|336476285|ref|YP_004615426.1| - 0.0003 20.3 0.1 0.95 9.1 0.0 3.2 3 0 0 3 3 3 2 Tc3 transposase MCPsignal PF00015.16 gi|336476285|ref|YP_004615426.1| - 0.00053 19.5 0.2 0.39 10.2 0.1 2.7 2 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain THP2 PF09432.5 gi|336476285|ref|YP_004615426.1| - 0.0025 17.6 9.5 0.0087 15.9 0.3 3.2 2 2 1 3 3 3 1 Tho complex subunit THP2 LUC7 PF03194.10 gi|336476285|ref|YP_004615426.1| - 0.013 15.0 13.6 0.045 13.2 4.0 2.4 1 1 1 2 2 2 0 LUC7 N_terminus Baculo_PEP_C PF04513.7 gi|336476285|ref|YP_004615426.1| - 0.015 15.1 0.8 0.84 9.4 0.0 3.1 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Suppressor_P21 PF11479.3 gi|336476285|ref|YP_004615426.1| - 0.016 14.9 0.7 0.034 13.9 0.1 1.9 2 0 0 2 2 2 0 RNA silencing suppressor P21 YfdX PF10938.3 gi|336476285|ref|YP_004615426.1| - 0.019 14.6 0.9 5.4 6.6 0.0 2.5 2 0 0 2 2 2 0 YfdX protein Allexi_40kDa PF05549.6 gi|336476285|ref|YP_004615426.1| - 0.025 13.8 15.2 0.65 9.2 2.1 3.2 1 1 2 3 3 3 0 Allexivirus 40kDa protein Syntaxin-6_N PF09177.6 gi|336476285|ref|YP_004615426.1| - 0.033 14.5 12.3 0.27 11.6 0.3 4.3 1 1 3 4 4 4 0 Syntaxin 6, N-terminal NPV_P10 PF05531.7 gi|336476285|ref|YP_004615426.1| - 0.066 13.4 14.7 3.8 7.8 0.3 5.7 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|336476285|ref|YP_004615426.1| - 0.084 12.8 6.7 2.5 8.1 0.3 3.7 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain MerR_1 PF13411.1 gi|336476285|ref|YP_004615426.1| - 0.09 12.5 0.2 6.1 6.6 0.0 2.6 3 0 0 3 3 2 0 MerR HTH family regulatory protein DUF4363 PF14276.1 gi|336476285|ref|YP_004615426.1| - 0.1 12.2 11.6 1 9.1 0.4 4.2 3 2 1 5 5 5 0 Domain of unknown function (DUF4363) LPP PF04728.8 gi|336476285|ref|YP_004615426.1| - 0.12 12.2 3.0 2.5 7.9 0.1 3.7 4 0 0 4 4 3 0 Lipoprotein leucine-zipper Alpha-E PF04168.7 gi|336476285|ref|YP_004615426.1| - 0.15 11.4 2.9 0.2 10.9 0.1 2.3 2 1 0 2 2 2 0 A predicted alpha-helical domain with a conserved ER motif. tRNA-synt_His PF13393.1 gi|336476285|ref|YP_004615426.1| - 0.28 10.1 4.7 1 8.3 0.5 2.3 2 0 0 2 2 2 0 Histidyl-tRNA synthetase Syntaxin PF00804.20 gi|336476285|ref|YP_004615426.1| - 0.33 11.1 16.9 3.5 7.8 1.4 4.6 2 2 1 4 4 4 0 Syntaxin TBPIP PF07106.8 gi|336476285|ref|YP_004615426.1| - 0.44 10.0 10.0 5.1 6.6 0.4 3.8 1 1 5 6 6 6 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ALMT PF11744.3 gi|336476285|ref|YP_004615426.1| - 0.96 8.0 2.8 2.1 6.9 0.3 2.4 1 1 2 3 3 3 0 Aluminium activated malate transporter Cauli_AT PF03233.8 gi|336476285|ref|YP_004615426.1| - 1 9.0 3.8 3.5 7.3 0.6 2.8 1 1 0 2 2 2 0 Aphid transmission protein IncA PF04156.9 gi|336476285|ref|YP_004615426.1| - 1.5 8.3 17.7 0.42 10.1 3.4 3.8 1 1 3 4 4 4 0 IncA protein DUF1664 PF07889.7 gi|336476285|ref|YP_004615426.1| - 3.9 7.2 13.7 5.5 6.8 0.8 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) HGD-D PF06050.8 gi|336476286|ref|YP_004615427.1| - 3.7e-109 364.7 0.1 4.3e-109 364.5 0.1 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Mer2 PF09074.5 gi|336476286|ref|YP_004615427.1| - 0.0013 18.7 0.6 0.0021 18.0 0.4 1.2 1 0 0 1 1 1 1 Mer2 TFIIE_alpha PF02002.12 gi|336476286|ref|YP_004615427.1| - 0.015 14.8 6.8 0.073 12.5 0.1 2.6 2 1 1 3 3 3 0 TFIIE alpha subunit EF1G PF00647.14 gi|336476286|ref|YP_004615427.1| - 0.056 13.1 0.0 0.33 10.6 0.0 2.2 2 0 0 2 2 2 0 Elongation factor 1 gamma, conserved domain DUF3452 PF11934.3 gi|336476286|ref|YP_004615427.1| - 0.098 11.9 0.1 0.19 11.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3452) DUF4211 PF13926.1 gi|336476286|ref|YP_004615427.1| - 0.32 10.3 2.1 0.2 11.0 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4211) BcrAD_BadFG PF01869.15 gi|336476287|ref|YP_004615428.1| - 2.1e-62 210.8 1.7 2.5e-62 210.6 1.2 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family CmcH_NodU PF02543.10 gi|336476287|ref|YP_004615428.1| - 8.5e-05 21.8 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase Peptidase_M22 PF00814.20 gi|336476287|ref|YP_004615428.1| - 0.00028 20.4 0.0 0.0031 17.0 0.0 2.0 2 0 0 2 2 2 1 Glycoprotease family FGGY_C PF02782.11 gi|336476287|ref|YP_004615428.1| - 0.028 14.0 0.1 0.085 12.4 0.0 1.8 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain GATase_2 PF00310.16 gi|336476288|ref|YP_004615429.1| - 3.1e-24 85.3 0.0 3e-23 82.1 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|336476288|ref|YP_004615429.1| - 7.2e-19 68.0 0.0 8.9e-18 64.5 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|336476288|ref|YP_004615429.1| - 2.3e-11 43.5 0.0 5.2e-10 39.1 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|336476288|ref|YP_004615429.1| - 0.1 11.2 0.0 0.19 10.4 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NADPH_Ox PF08414.5 gi|336476288|ref|YP_004615429.1| - 0.18 11.8 0.0 0.39 10.8 0.0 1.5 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase Glu_synthase PF01645.12 gi|336476289|ref|YP_004615430.1| - 3.4e-137 457.2 0.1 5.3e-137 456.6 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|336476289|ref|YP_004615430.1| - 1.9e-11 43.4 4.9 1.3e-08 34.1 1.7 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|336476289|ref|YP_004615430.1| - 2e-09 36.8 2.7 2.8e-08 33.0 1.1 2.6 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_syn_central PF04898.9 gi|336476289|ref|YP_004615430.1| - 7.1e-09 35.3 0.1 0.00058 19.2 0.0 2.8 2 1 0 2 2 2 2 Glutamate synthase central domain Fer4_7 PF12838.2 gi|336476289|ref|YP_004615430.1| - 1.1e-08 35.2 15.0 1.6e-06 28.3 7.8 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476289|ref|YP_004615430.1| - 1.5e-08 35.2 7.9 4.2e-05 24.1 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|336476289|ref|YP_004615430.1| - 1.5e-08 34.2 17.6 1.6e-05 24.5 9.9 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476289|ref|YP_004615430.1| - 3.1e-08 33.7 16.3 9.1e-08 32.2 7.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476289|ref|YP_004615430.1| - 3.3e-08 32.7 18.0 1e-05 24.8 0.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain NMO PF03060.10 gi|336476289|ref|YP_004615430.1| - 2.4e-07 30.2 4.6 2.4e-07 30.2 3.2 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_17 PF13534.1 gi|336476289|ref|YP_004615430.1| - 1.6e-06 28.3 6.5 0.078 13.3 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476289|ref|YP_004615430.1| - 5.6e-06 26.1 9.4 5.6e-06 26.1 6.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336476289|ref|YP_004615430.1| - 6.9e-05 22.7 16.9 0.019 14.9 10.5 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476289|ref|YP_004615430.1| - 0.00012 21.7 3.0 0.00012 21.7 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336476289|ref|YP_004615430.1| - 0.00014 21.6 21.4 0.005 16.6 1.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain DHO_dh PF01180.16 gi|336476289|ref|YP_004615430.1| - 0.00033 19.7 4.3 0.0019 17.2 3.0 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|336476289|ref|YP_004615430.1| - 0.0007 18.9 1.0 0.0013 18.0 0.3 1.7 2 0 0 2 2 1 1 Histidine biosynthesis protein Fer4_11 PF13247.1 gi|336476289|ref|YP_004615430.1| - 0.0032 17.3 5.1 0.0032 17.3 3.5 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain PcrB PF01884.12 gi|336476289|ref|YP_004615430.1| - 0.04 13.1 1.6 0.56 9.4 0.6 2.3 1 1 1 2 2 2 0 PcrB family Fer4_4 PF12800.2 gi|336476289|ref|YP_004615430.1| - 0.7 10.3 28.8 0.048 14.0 1.7 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336476289|ref|YP_004615430.1| - 5.3 7.4 19.4 0.34 11.3 0.6 3.4 4 0 0 4 4 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336476289|ref|YP_004615430.1| - 5.8 7.5 19.1 1.6 9.3 7.3 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|336476289|ref|YP_004615430.1| - 6.5 7.2 23.6 2 8.8 2.9 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain GXGXG PF01493.14 gi|336476290|ref|YP_004615431.1| - 6.9e-33 113.3 7.8 8.4e-33 113.0 5.4 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|336476291|ref|YP_004615432.1| - 9.7e-41 138.8 0.0 1.5e-40 138.2 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|336476291|ref|YP_004615432.1| - 3.4e-20 71.7 0.0 5.7e-20 70.9 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.2 gi|336476291|ref|YP_004615432.1| - 3.7e-07 30.4 11.9 8.9e-07 29.1 7.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476291|ref|YP_004615432.1| - 6.1e-06 26.3 13.3 1.8e-05 24.8 6.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476291|ref|YP_004615432.1| - 2.5e-05 23.6 21.1 0.00011 21.6 2.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336476291|ref|YP_004615432.1| - 2.8e-05 24.0 19.5 0.0027 17.9 0.9 3.6 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476291|ref|YP_004615432.1| - 7e-05 22.5 9.9 7e-05 22.5 6.8 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476291|ref|YP_004615432.1| - 7.1e-05 23.1 10.3 0.0044 17.4 0.4 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336476291|ref|YP_004615432.1| - 0.00061 19.7 12.5 0.0066 16.4 7.6 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476291|ref|YP_004615432.1| - 0.0012 18.5 20.7 0.0013 18.5 1.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476291|ref|YP_004615432.1| - 0.0012 19.4 13.0 0.016 15.9 7.0 3.2 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|336476291|ref|YP_004615432.1| - 0.0042 16.9 20.3 0.0049 16.7 2.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336476291|ref|YP_004615432.1| - 0.013 15.2 16.5 0.24 11.2 2.2 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336476291|ref|YP_004615432.1| - 0.042 14.4 6.0 0.6 10.7 0.5 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336476291|ref|YP_004615432.1| - 1 10.1 25.7 0.17 12.5 5.7 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476291|ref|YP_004615432.1| - 1.4 9.3 16.7 0.35 11.2 1.4 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476291|ref|YP_004615432.1| - 2.2 8.7 13.0 3.6 8.0 0.3 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Gln-synt_C PF00120.19 gi|336476292|ref|YP_004615433.1| - 2.3e-101 338.2 0.0 3e-101 337.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|336476292|ref|YP_004615433.1| - 1.1e-31 108.1 0.3 2.8e-31 106.9 0.2 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain zf-C3HC4_3 PF13920.1 gi|336476293|ref|YP_004615434.1| - 0.025 14.2 9.3 0.39 10.4 3.5 2.7 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|336476293|ref|YP_004615434.1| - 1.2 9.0 8.8 7.4 6.4 6.1 2.4 1 1 0 1 1 1 0 Double zinc ribbon tRNA-Thr_ED PF08915.6 gi|336476294|ref|YP_004615435.1| - 4.1e-41 140.1 3.0 4.6e-41 140.0 2.1 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase KaiC PF06745.8 gi|336476294|ref|YP_004615435.1| - 0.027 13.6 0.6 0.033 13.3 0.5 1.1 1 0 0 1 1 1 0 KaiC UDPG_MGDP_dh_N PF03721.9 gi|336476294|ref|YP_004615435.1| - 0.05 12.9 0.3 0.066 12.5 0.2 1.1 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CEP76-C2 PF15627.1 gi|336476294|ref|YP_004615435.1| - 0.099 12.1 0.3 0.12 11.8 0.2 1.2 1 0 0 1 1 1 0 CEP76 C2 domain DUF4282 PF14110.1 gi|336476295|ref|YP_004615436.1| - 0.05 13.8 0.1 0.05 13.8 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) PMSR PF01625.16 gi|336476296|ref|YP_004615437.1| - 6.9e-55 185.1 0.6 8.6e-55 184.8 0.4 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Gln-synt_C PF00120.19 gi|336476296|ref|YP_004615437.1| - 0.038 13.1 0.0 0.057 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain Response_reg PF00072.19 gi|336476297|ref|YP_004615438.1| - 2.5e-19 69.3 0.4 3.9e-19 68.6 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|336476297|ref|YP_004615438.1| - 2.7e-09 37.3 0.0 6.1e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|336476297|ref|YP_004615438.1| - 2e-08 34.0 0.0 4.6e-08 32.8 0.0 1.6 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|336476297|ref|YP_004615438.1| - 1.2e-07 31.3 0.0 2.3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336476297|ref|YP_004615438.1| - 9.2e-07 28.8 0.0 1.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|336476297|ref|YP_004615438.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 PAS fold Radical_SAM PF04055.16 gi|336476298|ref|YP_004615439.1| - 2.9e-07 30.8 0.1 8.9e-07 29.2 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336476298|ref|YP_004615439.1| - 4.6e-06 26.6 0.0 1.4e-05 25.1 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain LAM_C PF12544.3 gi|336476298|ref|YP_004615439.1| - 1.7e-05 24.8 0.1 5.9e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 Lysine-2,3-aminomutase Fer4_12 PF13353.1 gi|336476298|ref|YP_004615439.1| - 0.0022 18.1 0.1 0.005 16.9 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Gln-synt_C PF00120.19 gi|336476299|ref|YP_004615440.1| - 1.6e-103 345.4 0.0 1.9e-103 345.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|336476299|ref|YP_004615440.1| - 4.3e-29 99.9 0.0 1e-28 98.7 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Alpha-amylase PF00128.19 gi|336476300|ref|YP_004615441.1| - 1.2e-28 100.3 1.2 3.5e-28 98.9 0.8 1.6 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.11 gi|336476300|ref|YP_004615441.1| - 4.2e-08 31.4 4.8 0.00088 17.1 0.0 3.0 3 0 0 3 3 3 2 Glycosyl hydrolase family 70 DUF1939 PF09154.5 gi|336476300|ref|YP_004615441.1| - 0.023 14.6 0.1 0.051 13.4 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) TPP_enzyme_N PF02776.13 gi|336476301|ref|YP_004615442.1| - 8.4e-53 178.3 0.0 5.9e-52 175.6 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336476301|ref|YP_004615442.1| - 1.3e-40 138.5 1.1 4.2e-40 136.8 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|336476301|ref|YP_004615442.1| - 2.8e-30 104.8 0.0 7.2e-30 103.5 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|336476301|ref|YP_004615442.1| - 0.053 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DXP_synthase_N PF13292.1 gi|336476301|ref|YP_004615442.1| - 0.094 11.6 0.1 0.28 10.0 0.0 1.8 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase DUF1284 PF06935.6 gi|336476302|ref|YP_004615443.1| - 3.7e-25 88.0 2.8 4.4e-25 87.8 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) ELFV_dehydrog PF00208.16 gi|336476303|ref|YP_004615444.1| - 5e-72 242.4 0.8 7e-72 241.9 0.2 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|336476303|ref|YP_004615444.1| - 2.1e-49 166.4 0.0 4.3e-49 165.4 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|336476303|ref|YP_004615444.1| - 0.0029 16.7 0.2 0.0049 16.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336476304|ref|YP_004615445.1| - 8.5e-21 74.1 1.1 1.4e-20 73.5 0.8 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|336476304|ref|YP_004615445.1| - 1.1e-05 25.2 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|336476304|ref|YP_004615445.1| - 3.4e-05 23.3 0.1 5.1e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|336476304|ref|YP_004615445.1| - 0.035 14.3 0.1 0.094 13.0 0.1 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|336476304|ref|YP_004615445.1| - 0.051 13.4 0.1 0.085 12.7 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase DUF808 PF05661.7 gi|336476304|ref|YP_004615445.1| - 0.073 11.8 0.2 0.11 11.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF808) NAD_binding_10 PF13460.1 gi|336476304|ref|YP_004615445.1| - 0.079 12.9 0.2 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|336476304|ref|YP_004615445.1| - 0.12 11.7 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PPDK_N PF01326.14 gi|336476305|ref|YP_004615446.1| - 9.7e-56 189.1 0.0 1.5e-55 188.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DUF2094 PF09867.4 gi|336476305|ref|YP_004615446.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2094) DUF128 PF01995.11 gi|336476306|ref|YP_004615447.1| - 3.7e-83 278.0 0.9 4.5e-83 277.8 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|336476306|ref|YP_004615447.1| - 5.6e-33 112.4 1.5 5.6e-33 112.4 1.0 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|336476306|ref|YP_004615447.1| - 0.011 15.1 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e FeoB_N PF02421.13 gi|336476306|ref|YP_004615447.1| - 0.028 13.7 0.1 11 5.2 0.0 2.9 3 0 0 3 3 3 0 Ferrous iron transport protein B FUR PF01475.14 gi|336476306|ref|YP_004615447.1| - 0.059 13.2 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_21 PF13276.1 gi|336476306|ref|YP_004615447.1| - 0.062 13.3 0.2 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 HTH-like domain Sipho_Gp37 PF14594.1 gi|336476306|ref|YP_004615447.1| - 0.081 12.1 0.1 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Siphovirus ReqiPepy6 Gp37-like protein HTH_20 PF12840.2 gi|336476306|ref|YP_004615447.1| - 0.15 11.9 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ABC1 PF03109.11 gi|336476307|ref|YP_004615448.1| - 2.4e-39 133.9 0.0 4.8e-39 133.0 0.0 1.5 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.20 gi|336476307|ref|YP_004615448.1| - 2.5e-05 23.5 0.6 6.5e-05 22.2 0.4 1.8 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|336476307|ref|YP_004615448.1| - 8.6e-05 22.3 0.1 0.00037 20.3 0.0 1.9 2 0 0 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|336476307|ref|YP_004615448.1| - 0.093 11.7 0.1 0.81 8.7 0.0 2.2 1 1 1 3 3 3 0 Protein tyrosine kinase Abi PF02517.11 gi|336476307|ref|YP_004615448.1| - 2.6 8.2 5.6 3.6 7.7 3.9 1.5 1 1 0 1 1 1 0 CAAX protease self-immunity URO-D PF01208.12 gi|336476308|ref|YP_004615449.1| - 1.9e-38 132.2 0.0 2.3e-38 131.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) zf-RING_3 PF14369.1 gi|336476309|ref|YP_004615450.1| - 0.0046 16.9 0.5 0.37 10.8 0.0 2.4 2 0 0 2 2 2 1 zinc-finger DUF2296 PF10058.4 gi|336476309|ref|YP_004615450.1| - 0.0076 15.9 0.2 1 9.1 0.0 2.5 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) DUF2082 PF09855.4 gi|336476309|ref|YP_004615450.1| - 0.018 14.8 0.9 2.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|336476309|ref|YP_004615450.1| - 0.045 14.0 0.3 0.097 12.9 0.2 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar PhoU_div PF01865.11 gi|336476309|ref|YP_004615450.1| - 0.046 12.8 0.2 0.084 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF47 Zn_Tnp_IS1595 PF12760.2 gi|336476309|ref|YP_004615450.1| - 0.062 13.1 0.0 4.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PHD PF00628.24 gi|336476309|ref|YP_004615450.1| - 0.065 12.9 1.0 1.4 8.7 0.1 2.3 2 0 0 2 2 2 0 PHD-finger DUF3039 PF11238.3 gi|336476309|ref|YP_004615450.1| - 0.069 12.6 0.1 2.9 7.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) zinc_ribbon_2 PF13240.1 gi|336476309|ref|YP_004615450.1| - 0.071 12.6 0.4 4.3 6.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|336476309|ref|YP_004615450.1| - 0.074 12.7 0.3 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|336476309|ref|YP_004615450.1| - 0.077 12.2 3.0 2.5 7.4 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain PHD_2 PF13831.1 gi|336476309|ref|YP_004615450.1| - 0.089 12.1 2.0 0.79 9.0 0.2 2.2 2 0 0 2 2 2 0 PHD-finger TF_Zn_Ribbon PF08271.7 gi|336476309|ref|YP_004615450.1| - 0.1 11.9 2.4 8.7 5.7 0.2 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|336476309|ref|YP_004615450.1| - 0.16 11.8 2.0 0.23 11.3 0.6 1.9 2 1 0 2 2 2 0 Double zinc ribbon zf-RanBP PF00641.13 gi|336476309|ref|YP_004615450.1| - 1.2 8.3 11.3 0.7 9.0 0.7 3.1 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others Radical_SAM PF04055.16 gi|336476310|ref|YP_004615451.1| - 1.2e-18 67.8 0.1 1.2e-18 67.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336476310|ref|YP_004615451.1| - 9.1e-08 32.1 0.0 9.1e-08 32.1 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336476310|ref|YP_004615451.1| - 1.5e-06 28.3 0.7 3.4e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain XisI PF08869.6 gi|336476310|ref|YP_004615451.1| - 0.062 13.4 0.0 6.6 6.8 0.0 2.5 2 0 0 2 2 2 0 XisI protein AMP-binding PF00501.23 gi|336476311|ref|YP_004615452.1| - 4.9e-16 58.1 0.0 6.9e-16 57.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|336476311|ref|YP_004615452.1| - 0.0011 17.7 1.7 0.095 11.3 1.2 2.7 1 1 0 1 1 1 1 Acyl-protein synthetase, LuxE B12-binding PF02310.14 gi|336476312|ref|YP_004615453.1| - 1.3e-22 79.9 0.2 2e-22 79.3 0.1 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|336476312|ref|YP_004615453.1| - 6.1e-18 64.6 0.0 1.8e-17 63.0 0.0 1.8 1 0 0 1 1 1 1 B12 binding domain DUF1724 PF08350.5 gi|336476313|ref|YP_004615454.1| - 1.3e-24 85.4 0.2 2.3e-24 84.7 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|336476313|ref|YP_004615454.1| - 6.1e-07 29.1 0.0 1.6e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336476313|ref|YP_004615454.1| - 1.1e-05 24.9 0.2 1.8e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|336476313|ref|YP_004615454.1| - 0.00058 20.1 0.1 0.0012 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336476313|ref|YP_004615454.1| - 0.0034 17.1 0.2 0.0085 15.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|336476313|ref|YP_004615454.1| - 0.0098 15.5 0.1 0.03 14.0 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|336476313|ref|YP_004615454.1| - 0.017 14.7 0.3 0.033 13.8 0.2 1.4 1 0 0 1 1 1 0 HTH domain HxlR PF01638.12 gi|336476313|ref|YP_004615454.1| - 0.021 14.4 0.4 0.068 12.8 0.3 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HemN_C PF06969.11 gi|336476313|ref|YP_004615454.1| - 0.056 13.5 0.1 0.55 10.3 0.0 2.4 2 0 0 2 2 2 0 HemN C-terminal domain TrmB PF01978.14 gi|336476313|ref|YP_004615454.1| - 0.093 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336476313|ref|YP_004615454.1| - 0.096 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|336476313|ref|YP_004615454.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|336476313|ref|YP_004615454.1| - 0.12 11.9 1.2 0.2 11.2 0.3 1.7 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) MotA_activ PF09114.5 gi|336476313|ref|YP_004615454.1| - 0.12 12.1 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain GAF_2 PF13185.1 gi|336476314|ref|YP_004615455.1| - 5.2e-21 75.6 0.0 8.3e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|336476314|ref|YP_004615455.1| - 3.5e-18 65.4 0.5 9.3e-18 64.1 0.2 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|336476314|ref|YP_004615455.1| - 7.9e-18 64.2 0.0 2.1e-17 62.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336476314|ref|YP_004615455.1| - 2.8e-05 24.4 0.0 6.9e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|336476314|ref|YP_004615455.1| - 0.0011 18.6 0.0 0.0038 16.9 0.0 2.0 1 1 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|336476314|ref|YP_004615455.1| - 0.0016 18.5 0.0 0.0033 17.5 0.0 1.5 1 0 0 1 1 1 1 GAF domain zinc_ribbon_5 PF13719.1 gi|336476315|ref|YP_004615456.1| - 8.4e-05 22.0 4.3 0.012 15.1 0.0 2.7 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336476315|ref|YP_004615456.1| - 0.00053 19.6 5.5 0.016 14.8 0.0 2.7 3 0 0 3 3 3 2 zinc-ribbon domain UPF0547 PF10571.4 gi|336476315|ref|YP_004615456.1| - 0.0043 16.7 7.6 0.0099 15.5 0.1 2.6 3 0 0 3 3 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|336476315|ref|YP_004615456.1| - 0.0079 15.3 4.4 0.01 15.0 0.8 2.2 2 0 0 2 2 2 1 zinc-ribbon domain CpXC PF14353.1 gi|336476315|ref|YP_004615456.1| - 0.014 15.3 0.5 0.38 10.7 0.0 2.2 2 0 0 2 2 2 0 CpXC protein IBR PF01485.16 gi|336476315|ref|YP_004615456.1| - 0.037 13.9 6.2 0.67 9.8 0.0 2.3 2 0 0 2 2 2 0 IBR domain TerY-C PF15616.1 gi|336476315|ref|YP_004615456.1| - 0.042 13.7 1.5 0.055 13.4 1.1 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain HAP2-GCS1 PF10699.4 gi|336476315|ref|YP_004615456.1| - 0.075 13.0 0.5 0.13 12.2 0.3 1.4 1 0 0 1 1 1 0 Male gamete fusion factor DZR PF12773.2 gi|336476315|ref|YP_004615456.1| - 0.075 12.8 7.7 0.35 10.7 5.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon DUF35_N PF12172.3 gi|336476315|ref|YP_004615456.1| - 0.076 12.9 5.1 1.2 9.1 1.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2 PF00096.21 gi|336476315|ref|YP_004615456.1| - 0.085 13.2 4.0 3 8.3 0.2 2.9 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|336476315|ref|YP_004615456.1| - 0.16 11.9 2.2 6.2 6.8 0.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|336476315|ref|YP_004615456.1| - 0.31 11.0 6.6 1.3 9.0 0.2 2.5 2 1 1 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336476315|ref|YP_004615456.1| - 0.44 9.9 6.1 0.42 9.9 1.2 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding FYVE PF01363.16 gi|336476315|ref|YP_004615456.1| - 0.47 10.3 9.7 0.77 9.6 2.5 2.1 1 1 1 2 2 2 0 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|336476315|ref|YP_004615456.1| - 0.48 9.9 8.2 0.52 9.8 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|336476315|ref|YP_004615456.1| - 0.5 9.8 3.8 2.9 7.4 0.0 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain FYVE_2 PF02318.11 gi|336476315|ref|YP_004615456.1| - 0.66 9.8 5.1 1.5 8.7 3.5 1.7 1 1 0 1 1 1 0 FYVE-type zinc finger zf-FCS PF06467.9 gi|336476315|ref|YP_004615456.1| - 0.96 9.1 8.2 1.2 8.7 0.6 3.1 2 1 1 3 3 3 0 MYM-type Zinc finger with FCS sequence motif DNA_RNApol_7kD PF03604.8 gi|336476315|ref|YP_004615456.1| - 1.2 8.7 7.4 1.2 8.6 0.0 2.8 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|336476315|ref|YP_004615456.1| - 1.2 8.8 5.0 2.9 7.5 0.8 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family ADK_lid PF05191.9 gi|336476315|ref|YP_004615456.1| - 4 7.1 8.0 0.28 10.8 1.0 2.4 3 0 0 3 3 3 0 Adenylate kinase, active site lid Terminase_GpA PF05876.7 gi|336476315|ref|YP_004615456.1| - 5.2 5.3 5.1 13 3.9 3.7 1.5 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zf-RING_3 PF14369.1 gi|336476315|ref|YP_004615456.1| - 9.6 6.3 9.8 0.87 9.6 0.2 2.3 2 0 0 2 2 2 0 zinc-finger Oxidored_FMN PF00724.15 gi|336476316|ref|YP_004615457.1| - 1.5e-50 172.1 0.0 3.2e-50 171.0 0.0 1.5 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox PF00070.22 gi|336476316|ref|YP_004615457.1| - 8.3e-16 58.1 2.7 5.3e-08 33.1 0.2 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|336476316|ref|YP_004615457.1| - 2e-11 43.7 1.2 8.5e-09 35.3 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|336476316|ref|YP_004615457.1| - 5.4e-11 42.7 0.0 2.5e-06 27.4 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336476316|ref|YP_004615457.1| - 3.9e-10 39.1 0.0 8.7e-07 28.1 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.19 gi|336476316|ref|YP_004615457.1| - 1.1e-09 37.7 3.2 2.9e-05 23.1 0.1 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|336476316|ref|YP_004615457.1| - 9.3e-09 34.8 0.1 2.9e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336476316|ref|YP_004615457.1| - 4e-07 29.2 0.9 2.4e-05 23.3 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|336476316|ref|YP_004615457.1| - 3.6e-06 25.7 0.1 3.6e-06 25.7 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|336476316|ref|YP_004615457.1| - 3.7e-06 26.1 0.1 0.0017 17.4 0.0 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.1 gi|336476316|ref|YP_004615457.1| - 8.3e-06 26.0 0.2 0.099 12.9 0.0 3.0 2 1 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|336476316|ref|YP_004615457.1| - 1.9e-05 24.8 0.1 0.0037 17.3 0.0 2.8 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|336476316|ref|YP_004615457.1| - 0.00015 21.3 0.1 0.0035 16.9 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|336476316|ref|YP_004615457.1| - 0.00022 20.9 0.1 0.23 11.0 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|336476316|ref|YP_004615457.1| - 0.0005 19.5 1.6 0.24 10.8 0.1 2.8 3 0 0 3 3 3 2 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|336476316|ref|YP_004615457.1| - 0.0044 16.1 0.1 0.16 10.9 0.0 2.4 2 0 0 2 2 2 1 FAD binding domain FMO-like PF00743.14 gi|336476316|ref|YP_004615457.1| - 0.0046 15.2 0.1 1 7.5 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like ThiF PF00899.16 gi|336476316|ref|YP_004615457.1| - 0.005 16.6 3.2 9.1 6.1 0.0 3.8 3 0 0 3 3 3 0 ThiF family Shikimate_DH PF01488.15 gi|336476316|ref|YP_004615457.1| - 0.0077 16.3 1.8 4.9 7.2 0.0 3.2 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336476316|ref|YP_004615457.1| - 0.0092 15.3 1.0 0.19 11.1 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.1 gi|336476316|ref|YP_004615457.1| - 0.015 14.2 0.0 1.4 7.7 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|336476316|ref|YP_004615457.1| - 0.039 12.8 0.3 2.8 6.7 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|336476316|ref|YP_004615457.1| - 0.041 13.9 0.1 0.76 9.8 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|336476316|ref|YP_004615457.1| - 0.079 12.6 0.0 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Baculo_LEF-2 PF03041.9 gi|336476316|ref|YP_004615457.1| - 0.14 11.8 0.0 3.7 7.2 0.0 2.2 2 0 0 2 2 2 0 lef-2 NAD_binding_9 PF13454.1 gi|336476316|ref|YP_004615457.1| - 0.15 11.8 0.3 1.8 8.3 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|336476316|ref|YP_004615457.1| - 0.16 11.0 0.0 0.48 9.4 0.0 1.7 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase Aldedh PF00171.17 gi|336476318|ref|YP_004615459.1| - 1.4e-89 300.5 0.0 1.7e-89 300.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|336476318|ref|YP_004615459.1| - 7.5e-07 28.2 0.0 1.1e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) adh_short PF00106.20 gi|336476319|ref|YP_004615460.1| - 2.4e-19 69.8 0.0 3.5e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336476319|ref|YP_004615460.1| - 0.0047 16.6 0.0 0.0082 15.8 0.0 1.4 1 1 0 1 1 1 1 KR domain Phasin PF05597.6 gi|336476320|ref|YP_004615461.1| - 6.6e-11 42.0 8.9 2.8e-09 36.8 6.1 2.0 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BMFP PF04380.8 gi|336476320|ref|YP_004615461.1| - 0.0013 18.7 5.1 0.0087 16.1 3.0 2.4 1 1 0 1 1 1 1 Membrane fusogenic activity DUF3150 PF11348.3 gi|336476320|ref|YP_004615461.1| - 0.0017 17.4 1.0 0.0023 17.1 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3150) GatB_Yqey PF02637.13 gi|336476320|ref|YP_004615461.1| - 0.0055 16.4 5.1 0.0089 15.7 3.6 1.4 1 1 0 1 1 1 1 GatB domain DUF3349 PF11829.3 gi|336476320|ref|YP_004615461.1| - 0.0062 16.9 5.8 0.11 12.9 0.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3349) PhaP_Bmeg PF09602.5 gi|336476320|ref|YP_004615461.1| - 0.033 14.0 3.3 0.043 13.6 1.8 1.4 1 1 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) BCAS2 PF05700.6 gi|336476320|ref|YP_004615461.1| - 0.044 13.2 5.6 0.051 13.0 3.9 1.1 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) DUF3288 PF11691.3 gi|336476320|ref|YP_004615461.1| - 0.046 13.4 0.4 0.12 12.1 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3288) DUF4202 PF13875.1 gi|336476320|ref|YP_004615461.1| - 0.05 13.2 4.5 0.24 11.0 3.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4202) Glycos_trans_3N PF02885.12 gi|336476320|ref|YP_004615461.1| - 0.052 13.1 0.1 0.097 12.2 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family, helical bundle domain DUF3782 PF12644.2 gi|336476320|ref|YP_004615461.1| - 0.061 13.1 9.4 0.17 11.6 6.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) DUF1002 PF06207.6 gi|336476320|ref|YP_004615461.1| - 0.09 12.0 6.5 0.1 11.9 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) TMP_2 PF06791.8 gi|336476320|ref|YP_004615461.1| - 0.1 12.2 0.2 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Prophage tail length tape measure protein DGCR6 PF07324.6 gi|336476320|ref|YP_004615461.1| - 0.11 11.9 4.6 0.13 11.7 3.2 1.0 1 0 0 1 1 1 0 DiGeorge syndrome critical region 6 (DGCR6) protein DUF3826 PF12875.2 gi|336476320|ref|YP_004615461.1| - 0.18 11.5 6.8 0.2 11.3 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) DUF87 PF01935.12 gi|336476320|ref|YP_004615461.1| - 0.19 11.4 2.3 0.23 11.2 1.6 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 FliG_N PF14842.1 gi|336476320|ref|YP_004615461.1| - 0.23 11.6 4.3 0.37 10.9 3.0 1.5 1 1 0 1 1 1 0 FliG N-terminal domain RRF PF01765.14 gi|336476320|ref|YP_004615461.1| - 0.32 10.4 11.9 0.52 9.7 8.3 1.3 1 1 0 1 1 1 0 Ribosome recycling factor AbiH PF14253.1 gi|336476320|ref|YP_004615461.1| - 0.46 10.0 5.2 0.59 9.6 3.6 1.0 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH DUF3855 PF12967.2 gi|336476320|ref|YP_004615461.1| - 0.63 9.5 4.1 0.46 10.0 1.9 1.5 1 1 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3855) Fijivirus_P9-2 PF06837.6 gi|336476320|ref|YP_004615461.1| - 0.86 8.6 3.9 0.76 8.8 1.4 1.7 1 1 1 2 2 2 0 Fijivirus P9-2 protein DUF2680 PF10925.3 gi|336476320|ref|YP_004615461.1| - 1.3 8.9 9.3 2.3 8.1 4.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2680) ACCA PF03255.9 gi|336476320|ref|YP_004615461.1| - 2.7 7.5 6.8 1 8.8 2.4 1.8 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Terminase_2 PF03592.11 gi|336476320|ref|YP_004615461.1| - 3.5 7.8 11.0 4.6 7.5 7.6 1.1 1 0 0 1 1 1 0 Terminase small subunit PP2C_C PF07830.8 gi|336476320|ref|YP_004615461.1| - 4.7 7.3 7.1 3.1 7.9 1.6 2.3 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain ABC_tran PF00005.22 gi|336476321|ref|YP_004615462.1| - 3.1e-56 189.4 0.0 3.6e-29 101.8 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|336476321|ref|YP_004615462.1| - 2.9e-18 66.8 11.3 2.1e-10 41.0 1.4 3.8 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|336476321|ref|YP_004615462.1| - 6.2e-11 41.9 8.8 0.0044 16.1 0.6 4.2 4 0 0 4 4 4 4 AAA ATPase domain DUF258 PF03193.11 gi|336476321|ref|YP_004615462.1| - 9.6e-11 41.1 0.4 6.9e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|336476321|ref|YP_004615462.1| - 5.3e-09 36.9 1.6 0.0061 17.3 0.2 3.9 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|336476321|ref|YP_004615462.1| - 1.4e-08 35.3 1.9 5.1e-05 23.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336476321|ref|YP_004615462.1| - 2.2e-08 34.3 0.2 0.1 12.5 0.0 4.0 4 0 0 4 4 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|336476321|ref|YP_004615462.1| - 3.1e-08 33.8 0.7 0.022 14.9 0.0 3.7 3 0 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|336476321|ref|YP_004615462.1| - 7.7e-08 31.7 1.1 0.0099 15.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|336476321|ref|YP_004615462.1| - 1.3e-06 28.1 1.2 0.027 14.3 0.1 3.9 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|336476321|ref|YP_004615462.1| - 2.1e-06 27.1 0.8 0.5 9.5 0.0 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|336476321|ref|YP_004615462.1| - 7.6e-06 26.2 2.5 0.037 14.3 0.0 2.9 2 1 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|336476321|ref|YP_004615462.1| - 5.8e-05 22.9 2.3 0.016 14.9 0.0 3.2 3 1 1 4 4 4 1 Archaeal ATPase Miro PF08477.8 gi|336476321|ref|YP_004615462.1| - 5.9e-05 23.5 0.3 0.052 14.0 0.0 3.3 4 0 0 4 4 3 1 Miro-like protein MobB PF03205.9 gi|336476321|ref|YP_004615462.1| - 6.1e-05 22.7 0.3 0.061 13.0 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|336476321|ref|YP_004615462.1| - 0.00011 21.8 0.1 0.052 13.1 0.0 2.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|336476321|ref|YP_004615462.1| - 0.00014 21.3 2.5 0.98 8.7 0.0 4.2 5 0 0 5 5 4 1 AAA domain AAA_30 PF13604.1 gi|336476321|ref|YP_004615462.1| - 0.00016 21.3 0.1 0.095 12.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|336476321|ref|YP_004615462.1| - 0.00019 21.0 0.2 0.57 9.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|336476321|ref|YP_004615462.1| - 0.00027 20.9 0.7 0.16 11.9 0.1 3.1 3 1 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|336476321|ref|YP_004615462.1| - 0.00029 20.3 6.1 0.25 10.7 0.0 3.5 3 1 0 3 3 3 1 AAA-like domain AAA_33 PF13671.1 gi|336476321|ref|YP_004615462.1| - 0.00041 20.2 0.1 0.04 13.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|336476321|ref|YP_004615462.1| - 0.00049 19.6 0.1 0.067 12.6 0.0 2.7 3 0 0 3 3 2 1 Ethanolamine utilisation - propanediol utilisation AAA PF00004.24 gi|336476321|ref|YP_004615462.1| - 0.00084 19.5 2.0 0.68 10.1 0.1 4.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|336476321|ref|YP_004615462.1| - 0.0011 17.9 0.5 0.21 10.3 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain MMR_HSR1 PF01926.18 gi|336476321|ref|YP_004615462.1| - 0.0018 18.2 0.5 1.9 8.4 0.5 3.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|336476321|ref|YP_004615462.1| - 0.0025 17.9 0.5 2.8 8.1 0.0 3.3 3 0 0 3 3 3 1 RNA helicase AAA_14 PF13173.1 gi|336476321|ref|YP_004615462.1| - 0.0027 17.5 1.7 1.9 8.3 0.0 3.6 3 1 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|336476321|ref|YP_004615462.1| - 0.0033 17.1 4.3 1.3 8.6 0.0 3.9 5 0 0 5 5 4 1 NACHT domain T2SE PF00437.15 gi|336476321|ref|YP_004615462.1| - 0.0066 15.3 0.2 3.1 6.6 0.0 2.8 3 0 0 3 3 3 1 Type II/IV secretion system protein ArgK PF03308.11 gi|336476321|ref|YP_004615462.1| - 0.007 15.1 0.6 0.094 11.4 0.1 2.2 2 0 0 2 2 2 1 ArgK protein Mg_chelatase PF01078.16 gi|336476321|ref|YP_004615462.1| - 0.0089 15.1 0.2 0.61 9.2 0.0 2.6 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|336476321|ref|YP_004615462.1| - 0.026 13.9 0.7 1.5 8.1 0.0 2.7 3 0 0 3 3 2 0 IstB-like ATP binding protein Rad17 PF03215.10 gi|336476321|ref|YP_004615462.1| - 0.027 13.1 0.0 2.1 6.9 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|336476321|ref|YP_004615462.1| - 0.028 14.1 0.8 3.5 7.4 0.0 3.1 3 0 0 3 3 3 0 Part of AAA domain DBR1 PF05011.8 gi|336476321|ref|YP_004615462.1| - 0.035 14.0 0.2 0.071 12.9 0.1 1.5 1 0 0 1 1 1 0 Lariat debranching enzyme, C-terminal domain KAP_NTPase PF07693.9 gi|336476321|ref|YP_004615462.1| - 0.037 13.0 0.9 0.34 9.8 0.3 2.5 3 0 0 3 3 3 0 KAP family P-loop domain PIF1 PF05970.9 gi|336476321|ref|YP_004615462.1| - 0.043 12.7 0.1 14 4.5 0.0 3.0 3 0 0 3 3 3 0 PIF1-like helicase G-alpha PF00503.15 gi|336476321|ref|YP_004615462.1| - 0.06 12.0 0.4 0.96 8.0 0.1 2.2 2 0 0 2 2 2 0 G-protein alpha subunit cobW PF02492.14 gi|336476321|ref|YP_004615462.1| - 0.079 12.3 2.1 4.2 6.7 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|336476321|ref|YP_004615462.1| - 0.088 12.4 0.1 7.4 6.2 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase PhoH PF02562.11 gi|336476321|ref|YP_004615462.1| - 0.09 12.0 0.3 4.7 6.3 0.0 2.6 3 0 0 3 3 2 0 PhoH-like protein IIGP PF05049.8 gi|336476321|ref|YP_004615462.1| - 0.12 11.1 1.2 0.25 10.1 0.1 1.9 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) Zeta_toxin PF06414.7 gi|336476321|ref|YP_004615462.1| - 0.13 11.3 1.2 4.1 6.4 0.1 2.5 2 1 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.10 gi|336476321|ref|YP_004615462.1| - 0.16 11.6 1.0 16 5.1 0.1 2.7 2 0 0 2 2 2 0 NTPase DUF87 PF01935.12 gi|336476321|ref|YP_004615462.1| - 0.42 10.3 7.1 4 7.1 0.4 3.2 2 1 1 3 3 3 0 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|336476321|ref|YP_004615462.1| - 0.56 9.7 6.6 3.9 7.0 0.1 3.2 4 0 0 4 4 4 0 AAA domain PcrB PF01884.12 gi|336476322|ref|YP_004615463.1| - 7.8e-77 257.6 0.6 9.2e-77 257.3 0.4 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|336476322|ref|YP_004615463.1| - 1e-05 24.8 0.0 1.6e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|336476322|ref|YP_004615463.1| - 3.6e-05 22.8 0.2 6.9e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|336476322|ref|YP_004615463.1| - 0.03 13.4 0.1 0.055 12.5 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|336476322|ref|YP_004615463.1| - 0.1 11.1 0.1 0.44 9.0 0.0 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IGPS PF00218.16 gi|336476322|ref|YP_004615463.1| - 0.11 11.4 0.1 0.17 10.9 0.1 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Glu_synthase PF01645.12 gi|336476322|ref|YP_004615463.1| - 0.15 10.9 2.7 0.55 9.0 0.1 2.1 2 0 0 2 2 2 0 Conserved region in glutamate synthase Ribosomal_L40e PF01020.12 gi|336476323|ref|YP_004615464.1| - 0.00017 21.1 7.7 0.00021 20.8 5.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|336476323|ref|YP_004615464.1| - 0.0013 18.5 2.0 0.0015 18.3 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336476323|ref|YP_004615464.1| - 0.014 14.8 0.6 0.021 14.2 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-DHHC PF01529.15 gi|336476323|ref|YP_004615464.1| - 0.017 14.5 2.4 0.018 14.4 1.7 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-ribbon_3 PF13248.1 gi|336476323|ref|YP_004615464.1| - 0.02 14.0 0.9 0.027 13.6 0.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336476323|ref|YP_004615464.1| - 0.023 14.1 5.7 0.023 14.1 4.0 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-tcix PF14952.1 gi|336476323|ref|YP_004615464.1| - 0.051 12.9 5.3 0.063 12.6 3.7 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.4 gi|336476323|ref|YP_004615464.1| - 0.052 13.2 2.6 0.14 11.8 1.8 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RanBP PF00641.13 gi|336476323|ref|YP_004615464.1| - 0.28 10.3 2.9 0.42 9.7 2.0 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others HypA PF01155.14 gi|336476323|ref|YP_004615464.1| - 0.37 10.4 1.8 0.38 10.4 1.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|336476323|ref|YP_004615464.1| - 0.73 9.8 5.0 0.16 11.9 1.0 1.8 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_POL_M_15KD PF02150.11 gi|336476323|ref|YP_004615464.1| - 2.3 8.0 6.7 5.6 6.7 4.4 1.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GatB_N PF02934.10 gi|336476324|ref|YP_004615465.1| - 1.6e-112 375.1 0.0 2.2e-112 374.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|336476324|ref|YP_004615465.1| - 2e-44 150.8 0.9 3.7e-44 150.0 0.6 1.4 1 0 0 1 1 1 1 GatB domain Pathogen_betaC1 PF09593.5 gi|336476324|ref|YP_004615465.1| - 0.034 13.8 0.3 0.077 12.7 0.2 1.6 1 0 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein Amidase PF01425.16 gi|336476325|ref|YP_004615466.1| - 2.3e-142 474.9 0.0 2.6e-142 474.7 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|336476326|ref|YP_004615467.1| - 9.5e-25 86.2 0.8 9.5e-25 86.2 0.6 1.3 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit IL34 PF15036.1 gi|336476326|ref|YP_004615467.1| - 0.021 14.3 0.6 0.024 14.1 0.4 1.1 1 0 0 1 1 1 0 Interleukin 34 TcdA_TcdB_pore PF12920.2 gi|336476326|ref|YP_004615467.1| - 0.022 12.7 0.1 0.025 12.4 0.1 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain NAD_binding_3 PF03447.11 gi|336476326|ref|YP_004615467.1| - 0.083 13.2 0.2 0.1 12.9 0.1 1.2 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Caudo_TAP PF02413.12 gi|336476326|ref|YP_004615467.1| - 0.11 12.7 1.8 0.16 12.1 0.2 1.9 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein Radical_SAM PF04055.16 gi|336476327|ref|YP_004615468.1| - 1.5e-09 38.2 0.1 2.6e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF4157 PF13699.1 gi|336476327|ref|YP_004615468.1| - 0.18 11.9 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Mrr_cat PF04471.7 gi|336476328|ref|YP_004615469.1| - 1.3e-28 99.0 0.0 2.4e-28 98.2 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease bPH_3 PF14470.1 gi|336476328|ref|YP_004615469.1| - 0.0022 18.2 4.4 0.36 11.1 0.7 2.9 1 1 1 2 2 2 2 Bacterial PH domain bPH_1 PF08000.6 gi|336476328|ref|YP_004615469.1| - 0.019 14.6 1.4 0.36 10.4 0.1 2.5 2 0 0 2 2 2 0 Bacterial PH domain Thioredoxin PF00085.15 gi|336476329|ref|YP_004615470.1| - 3.2e-25 87.7 0.0 4.5e-25 87.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336476329|ref|YP_004615470.1| - 2.2e-08 34.2 0.1 3.9e-07 30.2 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|336476329|ref|YP_004615470.1| - 2.1e-05 24.5 0.1 0.0011 19.0 0.0 2.6 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|336476329|ref|YP_004615470.1| - 0.0026 17.2 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|336476329|ref|YP_004615470.1| - 0.0029 17.1 0.0 0.082 12.4 0.0 2.1 1 1 1 2 2 2 1 Redoxin Thioredoxin_3 PF13192.1 gi|336476329|ref|YP_004615470.1| - 0.0055 16.4 0.0 0.0091 15.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|336476329|ref|YP_004615470.1| - 0.014 15.2 0.0 0.04 13.8 0.0 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Phosducin PF02114.11 gi|336476329|ref|YP_004615470.1| - 0.014 14.0 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Phosducin DUF2114 PF09887.4 gi|336476330|ref|YP_004615471.1| - 9.5e-220 729.5 5.2 1.1e-219 729.3 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) dTMP_synthase PF02593.9 gi|336476331|ref|YP_004615472.1| - 5.8e-64 215.4 0.0 6.8e-64 215.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DapB_N PF01113.15 gi|336476331|ref|YP_004615472.1| - 0.00048 20.0 0.0 0.0016 18.3 0.0 1.9 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Thymidylate_kin PF02223.12 gi|336476332|ref|YP_004615473.1| - 1.6e-45 154.7 0.0 1.8e-45 154.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|336476332|ref|YP_004615473.1| - 0.00052 20.3 0.0 0.0026 18.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|336476332|ref|YP_004615473.1| - 0.0017 18.2 0.0 0.0028 17.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336476332|ref|YP_004615473.1| - 0.083 12.7 0.0 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain His_biosynth PF00977.16 gi|336476334|ref|YP_004615475.1| - 1.2e-36 126.1 0.6 1.4e-36 125.9 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Cobl PF09469.5 gi|336476334|ref|YP_004615475.1| - 0.013 15.4 0.1 0.044 13.7 0.0 1.8 2 0 0 2 2 2 0 Cordon-bleu ubiquitin-like domain UDPG_MGDP_dh_C PF03720.10 gi|336476334|ref|YP_004615475.1| - 0.018 15.1 0.1 0.033 14.3 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PcrB PF01884.12 gi|336476334|ref|YP_004615475.1| - 0.035 13.3 0.3 0.084 12.1 0.0 1.7 2 0 0 2 2 2 0 PcrB family Trp_syntA PF00290.15 gi|336476334|ref|YP_004615475.1| - 0.049 12.1 0.7 3.5 6.0 0.1 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|336476334|ref|YP_004615475.1| - 0.053 12.5 0.1 8.1 5.4 0.0 2.3 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF556 PF04476.8 gi|336476335|ref|YP_004615476.1| - 5.9e-99 330.0 0.2 6.7e-99 329.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) HTH_5 PF01022.15 gi|336476336|ref|YP_004615477.1| - 1e-17 63.4 0.5 2.5e-13 49.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336476336|ref|YP_004615477.1| - 7e-12 44.9 0.2 1e-09 38.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|336476336|ref|YP_004615477.1| - 4.2e-06 26.3 0.0 0.0044 16.7 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336476336|ref|YP_004615477.1| - 5e-06 26.0 0.0 0.096 12.3 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|336476336|ref|YP_004615477.1| - 3.6e-05 23.0 1.5 0.01 15.2 0.2 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|336476336|ref|YP_004615477.1| - 5.5e-05 22.7 0.0 0.00016 21.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|336476336|ref|YP_004615477.1| - 0.0002 21.1 1.4 0.17 11.6 0.0 3.1 3 1 0 3 3 2 2 Winged helix-turn-helix HTH_34 PF13601.1 gi|336476336|ref|YP_004615477.1| - 0.00026 20.9 0.0 0.0024 17.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|336476336|ref|YP_004615477.1| - 0.0026 17.4 0.0 0.033 13.8 0.0 2.3 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.12 gi|336476336|ref|YP_004615477.1| - 0.0028 17.1 0.7 0.21 11.0 0.0 2.6 2 1 0 2 2 2 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|336476336|ref|YP_004615477.1| - 0.0043 17.3 0.0 2.3 8.5 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336476336|ref|YP_004615477.1| - 0.0057 16.7 0.0 0.55 10.3 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator DivIC PF04977.10 gi|336476336|ref|YP_004615477.1| - 0.011 15.1 0.2 0.023 14.1 0.2 1.5 1 0 0 1 1 1 0 Septum formation initiator TBPIP PF07106.8 gi|336476336|ref|YP_004615477.1| - 0.011 15.2 0.3 1 8.8 0.1 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PadR PF03551.9 gi|336476336|ref|YP_004615477.1| - 0.02 14.6 0.0 0.12 12.1 0.0 2.2 2 1 0 2 2 1 0 Transcriptional regulator PadR-like family HSCB_C PF07743.8 gi|336476336|ref|YP_004615477.1| - 0.026 14.9 1.3 0.05 14.0 0.9 1.5 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain Ferritin PF00210.19 gi|336476336|ref|YP_004615477.1| - 0.043 13.5 0.7 0.067 12.9 0.5 1.3 1 0 0 1 1 1 0 Ferritin-like domain Snapin_Pallidin PF14712.1 gi|336476336|ref|YP_004615477.1| - 0.073 13.3 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 Snapin/Pallidin DUF972 PF06156.8 gi|336476336|ref|YP_004615477.1| - 0.087 13.1 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) FeoC PF09012.5 gi|336476336|ref|YP_004615477.1| - 0.093 12.4 0.0 10 5.9 0.0 2.6 3 0 0 3 3 2 0 FeoC like transcriptional regulator IF2_N PF04760.10 gi|336476336|ref|YP_004615477.1| - 0.11 12.1 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region NYD-SP28 PF14772.1 gi|336476336|ref|YP_004615477.1| - 0.16 12.1 3.3 0.42 10.7 1.6 2.1 2 1 0 2 2 2 0 Sperm tail AAA PF00004.24 gi|336476337|ref|YP_004615478.1| - 1.7e-98 325.9 0.0 1.3e-49 167.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|336476337|ref|YP_004615478.1| - 1.4e-25 88.9 2.3 1.1e-24 86.1 1.0 2.9 4 0 0 4 4 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|336476337|ref|YP_004615478.1| - 1.6e-17 63.9 0.1 2.8e-07 30.5 0.0 2.9 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|336476337|ref|YP_004615478.1| - 5.6e-17 61.1 0.1 1.5e-16 59.7 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|336476337|ref|YP_004615478.1| - 4.2e-15 55.4 0.1 2.8e-08 33.1 0.0 2.9 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|336476337|ref|YP_004615478.1| - 1.6e-13 51.5 0.1 3.4e-06 27.8 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336476337|ref|YP_004615478.1| - 3.5e-13 49.9 0.0 2.9e-05 24.1 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336476337|ref|YP_004615478.1| - 3.3e-12 46.6 0.2 0.00065 19.8 0.1 3.9 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|336476337|ref|YP_004615478.1| - 4e-12 46.0 1.8 0.00012 21.8 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|336476337|ref|YP_004615478.1| - 2e-11 43.2 0.0 0.00017 20.4 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|336476337|ref|YP_004615478.1| - 2.1e-11 43.8 0.0 5.3e-05 23.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|336476337|ref|YP_004615478.1| - 5.8e-11 41.8 0.0 0.00015 20.9 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin AAA_33 PF13671.1 gi|336476337|ref|YP_004615478.1| - 2.2e-10 40.5 0.0 0.0002 21.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|336476337|ref|YP_004615478.1| - 4.4e-09 35.9 0.2 0.0042 16.7 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|336476337|ref|YP_004615478.1| - 3.6e-08 33.0 0.0 0.0076 15.6 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|336476337|ref|YP_004615478.1| - 6.3e-08 32.9 0.1 0.021 15.1 0.0 3.2 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.16 gi|336476337|ref|YP_004615478.1| - 7e-08 31.8 0.1 0.0084 15.2 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|336476337|ref|YP_004615478.1| - 7.4e-08 32.3 0.5 0.0049 16.5 0.0 3.8 3 2 0 3 3 3 2 Archaeal ATPase AAA_25 PF13481.1 gi|336476337|ref|YP_004615478.1| - 8.5e-08 31.8 3.7 0.099 12.0 0.1 3.7 2 2 1 3 3 3 3 AAA domain AAA_28 PF13521.1 gi|336476337|ref|YP_004615478.1| - 9.6e-08 32.1 0.0 0.008 16.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|336476337|ref|YP_004615478.1| - 7.4e-07 28.7 0.1 0.14 11.6 0.0 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|336476337|ref|YP_004615478.1| - 1.4e-06 28.4 0.0 0.068 13.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase DUF815 PF05673.8 gi|336476337|ref|YP_004615478.1| - 3.2e-06 26.2 0.0 0.066 12.1 0.0 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|336476337|ref|YP_004615478.1| - 4.2e-06 27.0 0.0 0.13 12.5 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|336476337|ref|YP_004615478.1| - 5.5e-06 26.1 0.1 0.7 9.5 0.0 3.9 3 1 1 4 4 4 2 NACHT domain AAA_3 PF07726.6 gi|336476337|ref|YP_004615478.1| - 5.6e-06 26.0 0.0 0.095 12.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|336476337|ref|YP_004615478.1| - 8.1e-06 25.5 0.0 0.059 12.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|336476337|ref|YP_004615478.1| - 2.6e-05 24.2 0.0 0.19 11.7 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|336476337|ref|YP_004615478.1| - 3.3e-05 23.2 0.1 0.15 11.3 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein KaiC PF06745.8 gi|336476337|ref|YP_004615478.1| - 0.00012 21.2 2.6 0.98 8.4 0.1 3.9 2 2 1 3 3 3 1 KaiC Parvo_NS1 PF01057.12 gi|336476337|ref|YP_004615478.1| - 0.00018 20.5 0.5 0.15 10.8 0.0 2.5 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 Cytidylate_kin2 PF13189.1 gi|336476337|ref|YP_004615478.1| - 0.00024 21.0 0.4 0.44 10.4 0.0 3.7 4 0 0 4 4 4 1 Cytidylate kinase-like family NTPase_1 PF03266.10 gi|336476337|ref|YP_004615478.1| - 0.00024 20.8 2.1 1.9 8.2 0.0 4.0 2 2 1 3 3 3 1 NTPase ATP-synt_ab PF00006.20 gi|336476337|ref|YP_004615478.1| - 0.00028 20.4 0.0 0.38 10.2 0.0 2.5 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|336476337|ref|YP_004615478.1| - 0.00043 19.9 0.0 0.83 9.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|336476337|ref|YP_004615478.1| - 0.00062 18.8 0.0 0.42 9.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|336476337|ref|YP_004615478.1| - 0.00077 19.1 0.0 0.18 11.4 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein NB-ARC PF00931.17 gi|336476337|ref|YP_004615478.1| - 0.00079 18.3 0.0 0.62 8.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.1 gi|336476337|ref|YP_004615478.1| - 0.0008 19.0 0.0 0.74 9.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain Guanylate_kin PF00625.16 gi|336476337|ref|YP_004615478.1| - 0.0018 17.7 0.5 4.1 6.8 0.0 4.1 3 1 1 4 4 4 0 Guanylate kinase UPF0079 PF02367.12 gi|336476337|ref|YP_004615478.1| - 0.0028 17.2 0.0 3.1 7.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AFG1_ATPase PF03969.11 gi|336476337|ref|YP_004615478.1| - 0.0049 15.7 0.0 2.5 6.7 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase SKI PF01202.17 gi|336476337|ref|YP_004615478.1| - 0.0055 16.5 0.1 2.1 8.1 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase KAP_NTPase PF07693.9 gi|336476337|ref|YP_004615478.1| - 0.0072 15.3 0.0 1.5 7.7 0.1 3.0 2 1 1 3 3 3 1 KAP family P-loop domain IPT PF01745.11 gi|336476337|ref|YP_004615478.1| - 0.0099 15.0 0.0 1.3 8.1 0.0 2.6 2 0 0 2 2 2 1 Isopentenyl transferase ResIII PF04851.10 gi|336476337|ref|YP_004615478.1| - 0.016 15.0 0.0 4.3 7.1 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KTI12 PF08433.5 gi|336476337|ref|YP_004615478.1| - 0.058 12.5 0.0 8.7 5.4 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|336476337|ref|YP_004615478.1| - 0.059 12.9 0.0 5.2 6.6 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_23 PF13476.1 gi|336476337|ref|YP_004615478.1| - 0.067 13.5 0.4 2.1 8.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|336476337|ref|YP_004615478.1| - 0.25 10.7 3.8 4.7 6.5 0.2 3.6 2 2 0 3 3 3 0 AAA-like domain UPF0278 PF08745.6 gi|336476338|ref|YP_004615479.1| - 3.5e-90 300.7 0.0 4e-90 300.5 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family AdoMet_Synthase PF01941.14 gi|336476339|ref|YP_004615480.1| - 1.6e-155 517.4 0.7 1.9e-155 517.2 0.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) MSA-2c PF12238.3 gi|336476339|ref|YP_004615480.1| - 0.05 13.2 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 Merozoite surface antigen 2c Nup35_RRM_2 PF14605.1 gi|336476339|ref|YP_004615480.1| - 0.1 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif UbiA PF01040.13 gi|336476340|ref|YP_004615481.1| - 1.1e-40 139.5 22.0 1.7e-40 138.8 15.3 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Dr_adhesin PF12393.3 gi|336476340|ref|YP_004615481.1| - 0.52 10.4 3.0 12 6.1 0.0 4.0 3 0 0 3 3 3 0 Dr family adhesin NadA PF02445.11 gi|336476341|ref|YP_004615482.1| - 1.8e-125 417.6 4.5 2e-125 417.4 3.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.7 gi|336476341|ref|YP_004615482.1| - 0.013 14.9 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF108 PF01958.13 gi|336476342|ref|YP_004615483.1| - 9.4e-37 125.1 0.5 1.4e-36 124.5 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|336476342|ref|YP_004615483.1| - 4.2e-23 81.9 0.0 6.1e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|336476342|ref|YP_004615483.1| - 7.5e-06 25.8 0.1 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|336476342|ref|YP_004615483.1| - 1.7e-05 25.2 0.0 2.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|336476342|ref|YP_004615483.1| - 0.00014 22.1 0.0 0.00023 21.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336476342|ref|YP_004615483.1| - 0.0015 17.7 0.1 0.0025 16.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|336476342|ref|YP_004615483.1| - 0.0049 16.8 0.1 0.04 13.8 0.1 2.2 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336476342|ref|YP_004615483.1| - 0.0087 16.4 0.1 0.015 15.6 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Y1_Tnp PF01797.11 gi|336476342|ref|YP_004615483.1| - 0.019 14.8 0.1 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 Transposase IS200 like DUF3447 PF11929.3 gi|336476342|ref|YP_004615483.1| - 0.022 14.5 0.2 0.051 13.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3447) NAD_binding_2 PF03446.10 gi|336476342|ref|YP_004615483.1| - 0.028 14.2 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.14 gi|336476342|ref|YP_004615483.1| - 0.032 14.7 0.2 0.07 13.6 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain QRPTase_C PF01729.14 gi|336476343|ref|YP_004615484.1| - 4e-57 192.4 0.8 5.3e-57 192.0 0.6 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|336476343|ref|YP_004615484.1| - 1e-20 73.3 0.0 2.4e-20 72.1 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|336476343|ref|YP_004615484.1| - 0.0019 17.3 0.4 0.0086 15.2 0.0 2.0 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family DHQS PF01959.11 gi|336476343|ref|YP_004615484.1| - 0.02 13.5 0.2 0.034 12.8 0.2 1.3 1 0 0 1 1 1 0 3-dehydroquinate synthase (EC 4.6.1.3) IGPS PF00218.16 gi|336476343|ref|YP_004615484.1| - 0.024 13.7 0.4 0.037 13.0 0.3 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|336476343|ref|YP_004615484.1| - 0.057 12.6 1.4 0.35 10.0 0.1 2.3 1 1 0 2 2 2 0 PcrB family TRAP_beta PF05753.9 gi|336476344|ref|YP_004615485.1| - 3e-11 42.8 0.2 0.00011 21.4 0.0 2.5 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|336476344|ref|YP_004615485.1| - 3.3e-11 43.0 0.3 1.1e-07 31.7 0.0 2.8 2 1 1 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|336476344|ref|YP_004615485.1| - 7.2e-11 42.0 1.5 0.00017 21.5 0.2 3.0 3 0 0 3 3 3 2 CARDB BatD PF13584.1 gi|336476344|ref|YP_004615485.1| - 1.4e-07 30.5 0.8 0.0013 17.4 0.0 2.5 1 1 0 2 2 2 2 Oxygen tolerance Gryzun PF07919.7 gi|336476344|ref|YP_004615485.1| - 0.0094 14.3 0.1 0.017 13.4 0.1 1.4 1 0 0 1 1 1 1 Gryzun, putative trafficking through Golgi NPCBM_assoc PF10633.4 gi|336476344|ref|YP_004615485.1| - 0.028 14.4 0.0 16 5.5 0.0 3.0 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Tubulin PF00091.20 gi|336476345|ref|YP_004615486.1| - 3.3e-32 112.0 0.1 5.6e-32 111.3 0.1 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|336476345|ref|YP_004615486.1| - 0.027 13.4 0.3 0.085 11.7 0.1 1.8 1 1 0 1 1 1 0 Tubulin like AA_permease_2 PF13520.1 gi|336476346|ref|YP_004615487.1| - 9.1e-44 149.6 56.6 1.8e-43 148.6 39.3 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|336476346|ref|YP_004615487.1| - 3.6e-35 121.2 53.6 4.8e-35 120.8 37.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|336476346|ref|YP_004615487.1| - 0.0086 15.9 3.3 0.0086 15.9 2.3 5.6 6 2 1 7 7 7 1 C-terminus of AA_permease UPF0182 PF03699.8 gi|336476347|ref|YP_004615488.1| - 1.4e-280 932.7 15.1 1.6e-280 932.5 10.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) DUF296 PF03479.10 gi|336476348|ref|YP_004615489.1| - 6.9e-17 61.1 0.0 7.8e-17 61.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) HisKA_2 PF07568.7 gi|336476349|ref|YP_004615490.1| - 3.4e-29 100.5 3.5 9e-29 99.1 2.4 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|336476349|ref|YP_004615490.1| - 1.2e-15 57.3 0.1 2.7e-15 56.2 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|336476349|ref|YP_004615490.1| - 4.5e-12 45.6 0.0 7.8e-12 44.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|336476349|ref|YP_004615490.1| - 1.8e-08 34.6 0.3 3.5e-08 33.7 0.2 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.1 gi|336476349|ref|YP_004615490.1| - 2.4e-06 27.8 0.1 0.016 15.5 0.0 2.9 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|336476349|ref|YP_004615490.1| - 2.3e-05 24.1 0.0 4.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|336476349|ref|YP_004615490.1| - 0.00021 21.0 0.0 0.0076 16.0 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|336476349|ref|YP_004615490.1| - 0.0024 17.9 0.0 0.64 10.0 0.0 2.6 2 0 0 2 2 2 1 PAS fold DUF2075 PF09848.4 gi|336476349|ref|YP_004615490.1| - 0.029 13.3 2.9 0.029 13.3 0.3 2.1 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) TrmB PF01978.14 gi|336476350|ref|YP_004615491.1| - 1.5e-05 24.5 0.1 4.4e-05 23.0 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336476350|ref|YP_004615491.1| - 2.5e-05 23.8 0.1 3.5e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 MarR family DUF387 PF04079.11 gi|336476350|ref|YP_004615491.1| - 0.0012 18.2 0.1 0.0021 17.4 0.1 1.4 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_IclR PF09339.5 gi|336476350|ref|YP_004615491.1| - 0.0089 15.5 0.1 0.023 14.3 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336476350|ref|YP_004615491.1| - 0.0099 15.2 0.7 0.43 9.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|336476350|ref|YP_004615491.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|336476350|ref|YP_004615491.1| - 0.012 15.4 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|336476350|ref|YP_004615491.1| - 0.012 15.9 0.1 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|336476350|ref|YP_004615491.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|336476350|ref|YP_004615491.1| - 0.015 15.0 0.2 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|336476350|ref|YP_004615491.1| - 0.016 14.9 0.1 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|336476350|ref|YP_004615491.1| - 0.039 13.7 0.0 0.083 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2034 PF10356.4 gi|336476350|ref|YP_004615491.1| - 0.066 12.3 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) SUKH-3 PF14433.1 gi|336476350|ref|YP_004615491.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 SUKH-3 immunity protein MacB_PCD PF12704.2 gi|336476351|ref|YP_004615492.1| - 4.2e-29 101.7 0.7 7.5e-29 100.9 0.5 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336476351|ref|YP_004615492.1| - 1.3e-24 86.2 13.2 1.2e-21 76.7 7.8 2.2 2 0 0 2 2 2 2 FtsX-like permease family DUF948 PF06103.6 gi|336476351|ref|YP_004615492.1| - 3.4 7.5 5.7 16 5.4 0.3 2.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF456 PF04306.8 gi|336476351|ref|YP_004615492.1| - 8.7 6.3 16.9 5.8 6.9 8.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF456) MacB_PCD PF12704.2 gi|336476352|ref|YP_004615493.1| - 1.4e-29 103.3 0.4 1.4e-29 103.3 0.3 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336476352|ref|YP_004615493.1| - 2.4e-16 59.5 16.6 2.4e-16 59.5 11.5 2.0 2 0 0 2 2 2 1 FtsX-like permease family Enolase_C PF00113.17 gi|336476353|ref|YP_004615494.1| - 1.5e-112 375.3 0.0 2.3e-112 374.8 0.0 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|336476353|ref|YP_004615494.1| - 4.9e-57 191.5 0.1 1.3e-56 190.1 0.1 1.7 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|336476353|ref|YP_004615494.1| - 0.027 14.4 0.0 0.081 12.9 0.0 1.7 2 0 0 2 2 2 0 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|336476353|ref|YP_004615494.1| - 0.048 12.5 0.0 0.086 11.7 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Na_Ca_ex PF01699.19 gi|336476354|ref|YP_004615495.1| - 2.1e-51 173.1 33.9 4e-28 97.7 5.9 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SHOCT PF09851.4 gi|336476355|ref|YP_004615496.1| - 4.3e-06 26.0 0.0 5.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|336476355|ref|YP_004615496.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 1 0 1 1 1 0 Gas vesicle protein G Halogen_Hydrol PF10112.4 gi|336476355|ref|YP_004615496.1| - 0.039 13.3 0.0 0.044 13.1 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4118 PF13493.1 gi|336476356|ref|YP_004615497.1| - 0.063 13.4 3.9 0.13 12.4 2.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Claudin_3 PF06653.6 gi|336476356|ref|YP_004615497.1| - 0.078 12.6 3.7 0.11 12.1 2.6 1.2 1 0 0 1 1 1 0 Tight junction protein, Claudin-like NfeD PF01957.13 gi|336476356|ref|YP_004615497.1| - 0.11 12.6 1.6 0.68 10.0 2.1 1.6 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Usp PF00582.21 gi|336476358|ref|YP_004615499.1| - 3e-31 108.4 0.1 3.4e-31 108.3 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family NIF3 PF01784.13 gi|336476358|ref|YP_004615499.1| - 0.018 14.6 0.1 0.027 14.0 0.1 1.4 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) PGM_PMM_I PF02878.11 gi|336476358|ref|YP_004615499.1| - 0.065 12.7 0.1 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SKI PF01202.17 gi|336476359|ref|YP_004615500.1| - 1.1e-32 113.0 0.1 1.3e-32 112.8 0.1 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|336476359|ref|YP_004615500.1| - 3.8e-11 43.8 0.2 5.3e-11 43.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336476359|ref|YP_004615500.1| - 4.3e-07 30.3 0.3 7.5e-07 29.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336476359|ref|YP_004615500.1| - 0.00019 21.6 0.2 0.00056 20.1 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CoaE PF01121.15 gi|336476359|ref|YP_004615500.1| - 0.0003 20.2 0.1 0.00081 18.8 0.0 1.7 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_33 PF13671.1 gi|336476359|ref|YP_004615500.1| - 0.00033 20.5 0.0 0.00067 19.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|336476359|ref|YP_004615500.1| - 0.00081 19.3 1.4 0.0054 16.6 0.9 2.2 1 1 0 1 1 1 1 Cytidylate kinase-like family DUF87 PF01935.12 gi|336476359|ref|YP_004615500.1| - 0.0015 18.3 5.2 0.12 12.2 0.4 2.2 2 1 0 2 2 2 2 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|336476359|ref|YP_004615500.1| - 0.0046 15.8 1.8 0.0049 15.7 0.2 1.8 2 1 0 2 2 2 1 NB-ARC domain Yqai PF09466.5 gi|336476359|ref|YP_004615500.1| - 0.013 15.4 0.0 0.45 10.5 0.0 2.4 1 1 1 2 2 2 0 Hypothetical protein Yqai AAA_28 PF13521.1 gi|336476359|ref|YP_004615500.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|336476359|ref|YP_004615500.1| - 0.017 14.2 0.1 0.051 12.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Thymidylate_kin PF02223.12 gi|336476359|ref|YP_004615500.1| - 0.027 13.8 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase MMR_HSR1 PF01926.18 gi|336476359|ref|YP_004615500.1| - 0.054 13.4 1.3 0.17 11.8 0.9 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|336476359|ref|YP_004615500.1| - 0.061 13.0 0.1 0.13 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|336476359|ref|YP_004615500.1| - 0.077 13.2 0.9 0.11 12.8 0.5 1.7 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|336476359|ref|YP_004615500.1| - 0.079 13.1 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|336476359|ref|YP_004615500.1| - 0.084 12.8 0.1 0.19 11.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|336476359|ref|YP_004615500.1| - 0.13 12.3 0.2 0.24 11.5 0.1 1.7 2 1 0 2 2 2 0 AAA domain Ribosomal_S27 PF01599.14 gi|336476360|ref|YP_004615501.1| - 1.3 8.8 6.4 0.46 10.3 2.5 1.6 2 0 0 2 2 2 0 Ribosomal protein S27a Cytochrom_B561 PF03188.11 gi|336476361|ref|YP_004615502.1| - 0.00031 20.5 3.2 0.00054 19.8 2.2 1.5 1 1 0 1 1 1 1 Eukaryotic cytochrome b561 Competence PF03772.11 gi|336476361|ref|YP_004615502.1| - 0.0095 15.0 9.1 0.014 14.5 6.3 1.2 1 0 0 1 1 1 1 Competence protein DUF420 PF04238.7 gi|336476361|ref|YP_004615502.1| - 0.016 15.1 13.6 0.022 14.7 9.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF420) Ninjurin PF04923.7 gi|336476361|ref|YP_004615502.1| - 0.085 12.5 5.8 0.2 11.3 4.0 1.8 1 1 0 1 1 1 0 Ninjurin ER_lumen_recept PF00810.13 gi|336476361|ref|YP_004615502.1| - 0.1 13.1 5.8 0.12 12.9 3.4 1.7 1 1 0 1 1 1 0 ER lumen protein retaining receptor NicO PF03824.11 gi|336476361|ref|YP_004615502.1| - 0.19 11.0 11.4 0.092 12.0 1.9 2.0 1 1 1 2 2 2 0 High-affinity nickel-transport protein DUF2231 PF09990.4 gi|336476361|ref|YP_004615502.1| - 0.34 11.2 8.3 0.051 13.9 1.2 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF2892 PF11127.3 gi|336476361|ref|YP_004615502.1| - 0.65 9.8 6.9 3.1 7.6 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2892) Flu_M2 PF00599.12 gi|336476361|ref|YP_004615502.1| - 0.96 9.2 6.2 1.7 8.4 0.2 2.3 1 1 2 3 3 3 0 Influenza Matrix protein (M2) Rax2 PF12768.2 gi|336476361|ref|YP_004615502.1| - 1 8.5 4.4 1.4 8.0 0.1 2.2 1 1 1 3 3 3 0 Cortical protein marker for cell polarity MpPF26 PF07666.6 gi|336476361|ref|YP_004615502.1| - 1.1 9.1 14.7 0.058 13.2 2.9 2.2 1 1 1 2 2 2 0 M penetrans paralogue family 26 DUF2101 PF09874.4 gi|336476361|ref|YP_004615502.1| - 1.2 8.6 8.8 1.6 8.1 6.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) PepSY_TM_2 PF13703.1 gi|336476361|ref|YP_004615502.1| - 2.5 8.3 9.9 5.8 7.1 2.5 3.1 1 1 2 3 3 3 0 PepSY-associated TM helix DUF3810 PF12725.2 gi|336476361|ref|YP_004615502.1| - 6.7 5.5 8.2 0.35 9.7 1.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) PHP_C PF13263.1 gi|336476362|ref|YP_004615503.1| - 2.4e-05 23.7 0.0 0.00017 21.0 0.0 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|336476362|ref|YP_004615503.1| - 0.13 12.0 0.4 0.2 11.4 0.3 1.9 1 1 0 1 1 1 0 PHP domain PAC2 PF09754.4 gi|336476363|ref|YP_004615504.1| - 1.2e-52 178.9 0.0 1.4e-52 178.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|336476364|ref|YP_004615505.1| - 5e-20 70.9 0.7 5.4e-20 70.8 0.5 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-H2C2_2 PF13465.1 gi|336476364|ref|YP_004615505.1| - 0.0053 16.9 0.9 2.2 8.7 0.2 2.3 2 0 0 2 2 2 2 Zinc-finger double domain NOB1_Zn_bind PF08772.6 gi|336476364|ref|YP_004615505.1| - 0.011 15.5 0.4 0.015 15.0 0.2 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF1272 PF06906.6 gi|336476364|ref|YP_004615505.1| - 0.023 14.5 0.9 0.026 14.3 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) PolC_DP2 PF03833.8 gi|336476364|ref|YP_004615505.1| - 0.059 11.0 0.7 0.067 10.8 0.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 RecR PF02132.10 gi|336476364|ref|YP_004615505.1| - 0.094 12.1 0.9 0.11 11.9 0.6 1.2 1 0 0 1 1 1 0 RecR protein zf-C3HC4_3 PF13920.1 gi|336476364|ref|YP_004615505.1| - 0.11 12.1 2.2 0.15 11.7 1.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|336476364|ref|YP_004615505.1| - 0.24 11.1 2.6 0.34 10.6 1.8 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-Sec23_Sec24 PF04810.10 gi|336476364|ref|YP_004615505.1| - 0.38 10.3 5.7 2.8 7.5 0.1 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-C3HC4_2 PF13923.1 gi|336476364|ref|YP_004615505.1| - 0.44 10.6 3.0 0.62 10.1 2.1 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|336476364|ref|YP_004615505.1| - 0.45 9.7 3.3 0.48 9.6 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|336476364|ref|YP_004615505.1| - 0.49 10.1 3.1 0.27 10.9 0.6 1.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|336476364|ref|YP_004615505.1| - 0.88 9.6 5.9 0.54 10.3 0.4 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27e PF01667.12 gi|336476364|ref|YP_004615505.1| - 3.1 7.4 5.5 2.2 7.9 0.1 2.3 2 1 1 3 3 3 0 Ribosomal protein S27 EIF_2_alpha PF07541.7 gi|336476365|ref|YP_004615506.1| - 1.4e-31 108.5 0.1 2.3e-31 107.8 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|336476365|ref|YP_004615506.1| - 9.9e-12 44.7 0.1 2.5e-11 43.4 0.0 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.12 gi|336476366|ref|YP_004615507.1| - 4e-25 87.1 0.8 4.3e-25 87.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|336476366|ref|YP_004615507.1| - 0.0046 16.4 0.1 0.0048 16.3 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-BED PF02892.10 gi|336476366|ref|YP_004615507.1| - 0.018 14.7 3.2 0.46 10.2 2.2 2.0 1 1 0 1 1 1 0 BED zinc finger HypA PF01155.14 gi|336476366|ref|YP_004615507.1| - 0.042 13.5 0.3 0.046 13.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_3 PF13878.1 gi|336476366|ref|YP_004615507.1| - 0.055 13.0 0.5 1.9 8.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn-ribbon_8 PF09723.5 gi|336476366|ref|YP_004615507.1| - 0.07 13.0 0.8 0.11 12.5 0.6 1.2 1 0 0 1 1 1 0 Zinc ribbon domain Sgf11 PF08209.6 gi|336476366|ref|YP_004615507.1| - 0.074 12.3 2.1 0.5 9.7 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_6 PF14599.1 gi|336476366|ref|YP_004615507.1| - 0.12 12.1 2.5 0.5 10.2 1.7 2.0 2 1 0 2 2 2 0 Zinc-ribbon zf-trcl PF13451.1 gi|336476366|ref|YP_004615507.1| - 1 9.0 4.1 2.5 7.7 0.4 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Ribosomal_L44 PF00935.14 gi|336476367|ref|YP_004615508.1| - 2.4e-26 91.5 9.0 2.4e-26 91.5 6.2 1.4 1 1 1 2 2 2 1 Ribosomal protein L44 RNHCP PF12647.2 gi|336476367|ref|YP_004615508.1| - 0.036 13.9 4.0 4.8 7.0 2.7 2.1 1 1 0 1 1 1 0 RNHCP domain Zn-ribbon_8 PF09723.5 gi|336476367|ref|YP_004615508.1| - 0.1 12.5 3.2 7.7 6.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|336476367|ref|YP_004615508.1| - 0.22 11.8 6.7 4.3 7.8 0.2 2.6 2 0 0 2 2 2 0 Zinc-finger double domain Ribosomal_L33 PF00471.15 gi|336476367|ref|YP_004615508.1| - 0.41 10.9 7.3 0.51 10.6 1.2 2.5 2 0 0 2 2 2 0 Ribosomal protein L33 Zn_Tnp_IS1 PF03811.8 gi|336476367|ref|YP_004615508.1| - 1.2 8.6 7.3 1.9 8.0 0.1 2.8 2 1 0 2 2 2 0 InsA N-terminal domain Sld5 PF05916.6 gi|336476368|ref|YP_004615509.1| - 0.028 14.6 1.4 0.079 13.2 0.8 2.0 2 0 0 2 2 2 0 GINS complex protein DNA_primase_S PF01896.14 gi|336476369|ref|YP_004615510.1| - 6.1e-21 74.7 0.0 2.8e-20 72.5 0.0 2.1 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit HHH_5 PF14520.1 gi|336476369|ref|YP_004615510.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix domain FbpA PF05833.6 gi|336476370|ref|YP_004615511.1| - 2.4e-100 336.2 7.3 3.1e-100 335.8 5.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|336476370|ref|YP_004615511.1| - 1.2e-29 101.9 0.0 2.6e-29 100.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|336476370|ref|YP_004615511.1| - 0.016 14.9 0.0 0.063 13.0 0.0 2.0 2 0 0 2 2 2 0 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.17 gi|336476370|ref|YP_004615511.1| - 0.08 13.4 1.3 0.39 11.1 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S13/S18 PLU-1 PF08429.6 gi|336476370|ref|YP_004615511.1| - 0.087 11.7 4.1 0.077 11.8 1.6 1.6 1 1 0 2 2 2 0 PLU-1-like protein DUF4463 PF14703.1 gi|336476370|ref|YP_004615511.1| - 3.4 8.2 7.9 0.25 11.9 1.3 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4463) Phage_GPO PF05929.6 gi|336476370|ref|YP_004615511.1| - 4.5 6.4 9.0 1.2 8.2 1.6 2.2 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase eRF1_1 PF03463.10 gi|336476371|ref|YP_004615512.1| - 2.8e-30 104.6 2.3 4.5e-30 103.9 1.6 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|336476371|ref|YP_004615512.1| - 2.1e-24 85.9 1.1 4.8e-24 84.8 0.3 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|336476371|ref|YP_004615512.1| - 1.6e-18 67.3 0.1 3.3e-18 66.3 0.1 1.6 1 0 0 1 1 1 1 eRF1 domain 2 DUF1136 PF06582.7 gi|336476371|ref|YP_004615512.1| - 0.033 13.8 0.3 0.073 12.7 0.2 1.6 1 0 0 1 1 1 0 Repeat of unknown function (DUF1136) MatE PF01554.13 gi|336476372|ref|YP_004615513.1| - 7.7e-48 162.1 43.5 1.7e-27 96.0 10.7 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|336476372|ref|YP_004615513.1| - 6.6e-10 38.9 29.9 3.2e-08 33.4 13.7 4.9 3 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DisA_N PF02457.11 gi|336476373|ref|YP_004615514.1| - 7.8e-28 96.0 0.5 1.7e-27 94.9 0.2 1.7 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding LigT_PEase PF02834.11 gi|336476374|ref|YP_004615515.1| - 9.2e-29 99.2 0.0 5.1e-17 61.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|336476374|ref|YP_004615515.1| - 9.1e-15 54.6 0.0 1.1e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|336476374|ref|YP_004615515.1| - 1.6e-10 41.0 0.0 2e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Ribosomal_L1 PF00687.16 gi|336476374|ref|YP_004615515.1| - 0.00013 21.3 0.0 0.00019 20.8 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L1p/L10e family Corona_NS2A PF05213.7 gi|336476374|ref|YP_004615515.1| - 0.025 13.9 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NS2A protein ApbE PF02424.10 gi|336476375|ref|YP_004615516.1| - 6.4e-79 264.8 0.0 7.9e-79 264.5 0.0 1.1 1 0 0 1 1 1 1 ApbE family PFK PF00365.15 gi|336476375|ref|YP_004615516.1| - 0.01 14.8 0.4 0.35 9.7 0.0 2.2 2 0 0 2 2 2 0 Phosphofructokinase DDE_Tnp_IS1595 PF12762.2 gi|336476375|ref|YP_004615516.1| - 0.072 12.9 0.4 1.5 8.6 0.1 2.3 2 0 0 2 2 2 0 ISXO2-like transposase domain MAP1B_neuraxin PF00414.12 gi|336476375|ref|YP_004615516.1| - 0.092 12.0 0.7 0.27 10.6 0.5 1.8 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat FBD PF08387.5 gi|336476376|ref|YP_004615517.1| - 0.079 12.4 0.1 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 FBD Cytochrome_C554 PF13435.1 gi|336476377|ref|YP_004615518.1| - 6.5e-08 32.6 23.9 0.013 15.5 0.5 5.0 3 2 1 4 4 4 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|336476377|ref|YP_004615518.1| - 1.4e-06 27.8 27.1 0.029 14.0 0.1 5.2 4 1 1 5 5 5 3 Cytochrome c7 Cytochrom_NNT PF03264.9 gi|336476377|ref|YP_004615518.1| - 1.2e-05 24.8 22.3 0.00032 20.1 0.5 5.6 5 1 1 6 6 6 3 NapC/NirT cytochrome c family, N-terminal region EF-hand_5 PF13202.1 gi|336476377|ref|YP_004615518.1| - 0.0049 16.1 0.0 0.013 14.8 0.0 1.7 1 0 0 1 1 1 1 EF hand EF-hand_1 PF00036.27 gi|336476377|ref|YP_004615518.1| - 0.068 12.5 0.2 0.19 11.0 0.1 1.8 1 0 0 1 1 1 0 EF hand FG-GAP PF01839.18 gi|336476377|ref|YP_004615518.1| - 0.078 12.6 1.2 9.1 6.1 0.2 2.7 2 0 0 2 2 2 0 FG-GAP repeat DUF164 PF02591.10 gi|336476377|ref|YP_004615518.1| - 0.28 11.0 0.0 0.28 11.0 0.0 3.0 3 0 0 3 3 3 0 Putative zinc ribbon domain CCP_MauG PF03150.9 gi|336476377|ref|YP_004615518.1| - 0.42 10.8 10.5 1.8 8.8 0.0 4.8 5 1 0 5 5 5 0 Di-haem cytochrome c peroxidase Cytochrom_CIII PF02085.11 gi|336476377|ref|YP_004615518.1| - 0.81 9.8 26.0 0.85 9.7 3.0 5.2 4 1 1 5 5 5 0 Class III cytochrome C family Complex1_51K PF01512.12 gi|336476378|ref|YP_004615519.1| - 1.1e-23 83.5 0.0 2.2e-23 82.6 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|336476378|ref|YP_004615519.1| - 1.6e-22 79.0 2.2 2.6e-22 78.4 0.2 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|336476378|ref|YP_004615519.1| - 1.3e-11 44.2 3.7 4.2e-11 42.5 0.5 2.5 2 0 0 2 2 2 1 SLBB domain Fer4_8 PF13183.1 gi|336476378|ref|YP_004615519.1| - 5.3e-09 35.9 5.8 0.001 19.0 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476378|ref|YP_004615519.1| - 1.5e-08 34.7 5.9 0.001 19.2 0.5 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476378|ref|YP_004615519.1| - 1.1e-07 31.4 10.3 3.5e-07 29.9 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476378|ref|YP_004615519.1| - 2.6e-07 30.2 12.6 0.0018 18.0 1.8 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476378|ref|YP_004615519.1| - 8.3e-07 29.2 25.5 0.00012 22.3 11.2 2.9 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476378|ref|YP_004615519.1| - 1.3e-06 28.2 15.3 0.003 17.7 2.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336476378|ref|YP_004615519.1| - 2e-06 27.4 16.8 0.00021 21.0 2.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476378|ref|YP_004615519.1| - 3.9e-06 27.5 4.0 0.031 15.0 0.3 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|336476378|ref|YP_004615519.1| - 8.3e-06 26.1 8.7 0.022 15.2 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476378|ref|YP_004615519.1| - 1.2e-05 24.7 14.0 0.0059 16.1 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476378|ref|YP_004615519.1| - 1.2e-05 25.5 12.6 0.00029 21.1 8.9 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|336476378|ref|YP_004615519.1| - 0.00011 21.7 8.8 0.0021 17.6 0.7 2.4 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|336476378|ref|YP_004615519.1| - 0.00039 20.7 18.8 0.031 14.8 4.2 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain NQRA PF05896.6 gi|336476378|ref|YP_004615519.1| - 0.00048 19.3 0.0 0.00073 18.8 0.0 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_21 PF14697.1 gi|336476378|ref|YP_004615519.1| - 0.0017 18.1 16.4 0.017 15.0 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476378|ref|YP_004615519.1| - 0.82 10.1 12.2 0.47 10.8 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain NQR2_RnfD_RnfE PF03116.10 gi|336476379|ref|YP_004615520.1| - 3.1e-69 233.5 22.3 6.1e-41 140.6 5.6 2.0 1 1 1 2 2 2 2 NQR2, RnfD, RnfE family ALMT PF11744.3 gi|336476379|ref|YP_004615520.1| - 1.4 7.5 5.5 2.1 6.8 3.8 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter FMN_bind PF04205.9 gi|336476380|ref|YP_004615521.1| - 1.2e-19 70.2 0.1 1.7e-19 69.7 0.1 1.3 1 0 0 1 1 1 1 FMN-binding domain DUF3042 PF11240.3 gi|336476380|ref|YP_004615521.1| - 0.46 10.3 4.5 0.13 12.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) Rnf-Nqr PF02508.9 gi|336476381|ref|YP_004615522.1| - 4.4e-57 192.7 16.5 5e-57 192.5 11.4 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Rnf-Nqr PF02508.9 gi|336476382|ref|YP_004615523.1| - 1.5e-59 200.7 18.5 1.9e-59 200.4 12.8 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein DUF1129 PF06570.6 gi|336476382|ref|YP_004615523.1| - 0.16 11.2 9.6 0.17 11.1 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF1761 PF08570.5 gi|336476382|ref|YP_004615523.1| - 1.9 8.5 14.2 1.5e+02 2.4 9.9 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) Fer4 PF00037.22 gi|336476383|ref|YP_004615524.1| - 1.3e-23 81.6 41.3 2.6e-08 33.1 2.2 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476383|ref|YP_004615524.1| - 7.8e-18 64.6 23.9 3.8e-10 39.9 8.0 3.7 3 2 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476383|ref|YP_004615524.1| - 2.4e-15 55.6 40.6 0.00012 21.8 1.1 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476383|ref|YP_004615524.1| - 4.2e-15 55.7 26.2 2.9e-09 37.0 8.2 3.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476383|ref|YP_004615524.1| - 7.2e-14 50.7 44.7 8.6e-06 25.3 1.2 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476383|ref|YP_004615524.1| - 8.7e-14 51.0 41.2 3.1e-09 36.4 8.7 4.1 1 1 3 4 4 4 3 4Fe-4S dicluster domain FeS PF04060.8 gi|336476383|ref|YP_004615524.1| - 4e-12 45.4 2.2 4e-12 45.4 1.5 4.0 4 0 0 4 4 3 1 Putative Fe-S cluster Fer4_21 PF14697.1 gi|336476383|ref|YP_004615524.1| - 1.8e-11 43.7 38.4 1.9e-06 27.5 10.8 4.4 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476383|ref|YP_004615524.1| - 4.1e-10 40.2 31.6 0.00069 20.3 0.7 4.9 5 0 0 5 5 5 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|336476383|ref|YP_004615524.1| - 1.2e-08 34.8 52.3 0.00017 21.5 9.6 4.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476383|ref|YP_004615524.1| - 2e-06 27.6 54.6 0.0019 18.3 1.4 6.3 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336476383|ref|YP_004615524.1| - 3.2e-06 27.2 56.9 0.0038 17.6 3.4 6.1 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476383|ref|YP_004615524.1| - 9.6e-06 25.8 41.2 0.0066 16.7 1.0 5.0 3 2 4 7 7 7 5 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476383|ref|YP_004615524.1| - 0.00024 21.4 36.7 0.024 15.0 2.5 5.3 5 0 0 5 5 5 3 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336476383|ref|YP_004615524.1| - 0.00055 20.4 43.3 0.0065 17.0 1.5 5.8 5 1 1 6 6 6 3 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|336476383|ref|YP_004615524.1| - 0.011 16.0 47.7 0.13 12.7 5.1 4.8 4 2 1 5 5 5 0 4Fe-4S dicluster domain Tic20 PF09685.5 gi|336476384|ref|YP_004615525.1| - 1.8e-11 43.9 9.2 2.2e-11 43.7 6.4 1.0 1 0 0 1 1 1 1 Tic20-like protein SirB PF04247.7 gi|336476384|ref|YP_004615525.1| - 0.059 13.0 5.9 0.22 11.2 4.5 1.6 1 1 0 1 1 1 0 Invasion gene expression up-regulator, SirB DUF2101 PF09874.4 gi|336476384|ref|YP_004615525.1| - 5.2 6.5 7.0 9.8 5.5 4.2 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2101) Rep_fac_C PF08542.6 gi|336476385|ref|YP_004615526.1| - 1.1e-21 76.5 0.0 2.7e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|336476385|ref|YP_004615526.1| - 4e-19 69.1 0.0 6.8e-18 65.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|336476385|ref|YP_004615526.1| - 4.4e-17 62.2 0.0 5.4e-15 55.4 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|336476385|ref|YP_004615526.1| - 8.9e-10 38.0 0.1 4.9e-09 35.5 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|336476385|ref|YP_004615526.1| - 1.8e-09 36.8 0.0 2.3e-07 29.9 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|336476385|ref|YP_004615526.1| - 6.4e-07 29.5 0.0 4.5e-05 23.5 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|336476385|ref|YP_004615526.1| - 6.5e-07 29.3 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|336476385|ref|YP_004615526.1| - 7.9e-07 28.1 0.0 3.7e-05 22.6 0.0 2.5 2 1 0 2 2 2 1 TIP49 C-terminus AAA_22 PF13401.1 gi|336476385|ref|YP_004615526.1| - 3.2e-06 27.3 0.0 0.11 12.6 0.0 2.5 1 1 1 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|336476385|ref|YP_004615526.1| - 3.7e-05 22.9 0.0 0.0059 15.7 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.8 gi|336476385|ref|YP_004615526.1| - 9.4e-05 21.9 0.0 0.00036 20.0 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.12 gi|336476385|ref|YP_004615526.1| - 0.00012 21.5 0.0 0.00032 20.1 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|336476385|ref|YP_004615526.1| - 0.00012 21.6 0.0 0.00027 20.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|336476385|ref|YP_004615526.1| - 0.00013 21.8 0.0 0.00041 20.2 0.0 1.9 2 1 0 2 2 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|336476385|ref|YP_004615526.1| - 0.0006 19.5 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|336476385|ref|YP_004615526.1| - 0.00063 19.4 0.0 0.011 15.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|336476385|ref|YP_004615526.1| - 0.00075 19.0 0.0 0.32 10.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|336476385|ref|YP_004615526.1| - 0.0017 18.3 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|336476385|ref|YP_004615526.1| - 0.0023 18.2 0.0 0.0062 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|336476385|ref|YP_004615526.1| - 0.0031 17.1 0.0 0.0053 16.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain SNF2_N PF00176.18 gi|336476385|ref|YP_004615526.1| - 0.0076 15.0 0.0 0.42 9.3 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_17 PF13207.1 gi|336476385|ref|YP_004615526.1| - 0.011 16.5 0.1 0.034 14.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336476385|ref|YP_004615526.1| - 0.018 14.4 0.0 0.041 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|336476385|ref|YP_004615526.1| - 0.018 14.9 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PhoH PF02562.11 gi|336476385|ref|YP_004615526.1| - 0.035 13.3 0.0 0.87 8.7 0.0 2.3 1 1 0 2 2 2 0 PhoH-like protein AAA_10 PF12846.2 gi|336476385|ref|YP_004615526.1| - 0.041 13.3 0.1 2.2 7.6 0.0 2.5 3 0 0 3 3 3 0 AAA-like domain RNA_helicase PF00910.17 gi|336476385|ref|YP_004615526.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sm_multidrug_ex PF06695.6 gi|336476386|ref|YP_004615527.1| - 3.2e-39 133.8 5.5 4.4e-39 133.3 3.8 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Pam17 PF08566.5 gi|336476386|ref|YP_004615527.1| - 0.099 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 Fer4 PF00037.22 gi|336476387|ref|YP_004615528.1| - 3.1e-15 55.0 14.3 4.6e-08 32.3 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476387|ref|YP_004615528.1| - 8.7e-13 47.8 21.8 1.9e-09 37.1 7.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476387|ref|YP_004615528.1| - 4.8e-12 45.1 11.5 8.3e-06 25.4 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336476387|ref|YP_004615528.1| - 5.1e-12 44.9 15.0 4.4e-06 26.3 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476387|ref|YP_004615528.1| - 6e-12 45.6 18.0 2.2e-09 37.4 6.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476387|ref|YP_004615528.1| - 2.5e-11 43.2 8.6 2.3e-05 24.1 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336476387|ref|YP_004615528.1| - 5e-11 42.8 7.4 8.2e-11 42.1 5.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336476387|ref|YP_004615528.1| - 7.3e-11 41.9 4.9 9e-11 41.6 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476387|ref|YP_004615528.1| - 1.2e-09 37.7 11.8 5.9e-05 23.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336476387|ref|YP_004615528.1| - 1.2e-07 32.1 12.3 0.00063 20.2 1.7 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|336476387|ref|YP_004615528.1| - 2.9e-07 31.1 34.0 0.00012 22.7 9.3 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|336476387|ref|YP_004615528.1| - 9.7e-07 29.0 7.0 3.4e-06 27.3 4.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476387|ref|YP_004615528.1| - 1.8e-06 28.2 13.9 0.0019 18.5 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476387|ref|YP_004615528.1| - 9.4e-06 25.9 16.4 0.0015 18.9 2.5 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336476387|ref|YP_004615528.1| - 1.5e-05 25.2 18.7 0.0035 17.7 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|336476387|ref|YP_004615528.1| - 0.036 13.6 8.3 0.45 10.1 5.8 2.0 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RhgB_N PF09284.5 gi|336476387|ref|YP_004615528.1| - 0.071 12.4 0.0 0.08 12.2 0.0 1.1 1 0 0 1 1 1 0 Rhamnogalacturonase B, N-terminal Fer4_11 PF13247.1 gi|336476387|ref|YP_004615528.1| - 0.094 12.6 3.6 0.15 11.9 2.5 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF678 PF05077.7 gi|336476387|ref|YP_004615528.1| - 2.4 8.2 5.4 12 6.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) CBFD_NFYB_HMF PF00808.18 gi|336476388|ref|YP_004615529.1| - 2.3e-17 62.7 0.3 2.8e-17 62.5 0.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|336476388|ref|YP_004615529.1| - 2.6e-12 46.6 0.1 2.9e-12 46.5 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|336476388|ref|YP_004615529.1| - 2.7e-06 27.4 0.0 3.1e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S Bromo_TP PF07524.8 gi|336476388|ref|YP_004615529.1| - 8.5e-06 25.4 0.0 9.6e-06 25.2 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.12 gi|336476388|ref|YP_004615529.1| - 4e-05 23.4 0.2 4.2e-05 23.4 0.1 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|336476388|ref|YP_004615529.1| - 0.00083 19.1 0.0 0.00089 19.0 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.11 gi|336476388|ref|YP_004615529.1| - 0.0018 18.0 0.0 0.002 17.9 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit CENP-T PF15511.1 gi|336476388|ref|YP_004615529.1| - 0.026 13.7 0.1 0.026 13.7 0.0 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Cnd3 PF12719.2 gi|336476388|ref|YP_004615529.1| - 0.033 13.1 0.0 0.033 13.1 0.0 1.0 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain Peptidase_C39 PF03412.10 gi|336476388|ref|YP_004615529.1| - 0.076 12.8 0.1 0.082 12.7 0.1 1.0 1 0 0 1 1 1 0 Peptidase C39 family PCP_red PF08369.5 gi|336476388|ref|YP_004615529.1| - 0.091 12.6 2.6 0.49 10.2 0.1 2.1 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF1931 PF09123.6 gi|336476388|ref|YP_004615529.1| - 0.092 12.6 0.2 0.099 12.5 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) TFIID_20kDa PF03847.8 gi|336476388|ref|YP_004615529.1| - 0.1 12.8 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A tRNA_anti-codon PF01336.20 gi|336476389|ref|YP_004615530.1| - 2.7e-05 23.9 3.8 0.035 13.9 0.0 3.4 3 1 0 3 3 3 2 OB-fold nucleic acid binding domain DUF768 PF05589.6 gi|336476390|ref|YP_004615531.1| - 0.016 15.1 0.3 0.044 13.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF768) RPA_C PF08784.6 gi|336476390|ref|YP_004615531.1| - 0.11 12.9 0.1 0.27 11.6 0.1 1.8 1 1 0 1 1 1 0 Replication protein A C terminal CDP-OH_P_transf PF01066.16 gi|336476391|ref|YP_004615532.1| - 3e-16 59.5 6.0 3e-16 59.5 4.2 1.8 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF997 PF06196.7 gi|336476391|ref|YP_004615532.1| - 0.93 9.0 3.7 0.26 10.8 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF997) DUF4131 PF13567.1 gi|336476391|ref|YP_004615532.1| - 7.3 5.9 11.1 0.35 10.2 1.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) PurS PF02700.9 gi|336476392|ref|YP_004615533.1| - 1e-26 92.6 0.1 1.2e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.4 gi|336476392|ref|YP_004615533.1| - 0.018 14.1 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) GATase_5 PF13507.1 gi|336476393|ref|YP_004615534.1| - 4.8e-44 150.2 0.0 5.6e-44 149.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|336476393|ref|YP_004615534.1| - 1.7e-09 37.2 0.0 2.5e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|336476393|ref|YP_004615534.1| - 8.6e-09 35.1 0.0 1.6e-08 34.2 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|336476393|ref|YP_004615534.1| - 1.3e-08 34.6 0.1 3.1e-08 33.3 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|336476393|ref|YP_004615534.1| - 5.6e-07 28.9 0.0 1.1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|336476393|ref|YP_004615534.1| - 0.00022 20.9 0.0 0.00069 19.2 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|336476393|ref|YP_004615534.1| - 0.0055 16.1 0.0 0.0087 15.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 RNase_HII PF01351.13 gi|336476394|ref|YP_004615535.1| - 1.1e-48 165.4 0.1 1.3e-48 165.3 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Ribosomal_S6 PF01250.12 gi|336476394|ref|YP_004615535.1| - 0.0066 16.2 0.1 0.014 15.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S6 DUF2119 PF09892.4 gi|336476394|ref|YP_004615535.1| - 0.041 13.1 0.7 0.27 10.5 0.0 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) Alpha_L_fucos PF01120.12 gi|336476394|ref|YP_004615535.1| - 0.076 11.8 0.2 0.098 11.5 0.1 1.1 1 0 0 1 1 1 0 Alpha-L-fucosidase T2SF PF00482.18 gi|336476395|ref|YP_004615536.1| - 4.8e-32 110.4 1.0 8.5e-18 64.4 0.4 4.3 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|336476395|ref|YP_004615536.1| - 0.0025 16.6 4.4 0.0085 14.9 0.5 2.3 2 0 0 2 2 2 2 Integral peroxisomal membrane peroxin Tetraspannin PF00335.15 gi|336476395|ref|YP_004615536.1| - 0.75 9.0 0.0 0.75 9.0 0.0 3.3 3 0 0 3 3 3 0 Tetraspanin family T2SE PF00437.15 gi|336476396|ref|YP_004615537.1| - 6.1e-52 176.1 0.0 3.7e-51 173.6 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF3484 PF11983.3 gi|336476396|ref|YP_004615537.1| - 0.0022 18.7 1.4 0.0022 18.7 1.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3484) AAA_29 PF13555.1 gi|336476396|ref|YP_004615537.1| - 0.033 13.7 0.1 0.072 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain B5 PF03484.10 gi|336476397|ref|YP_004615538.1| - 1.2e-18 66.6 1.3 2.8e-18 65.5 0.9 1.7 1 0 0 1 1 1 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|336476397|ref|YP_004615538.1| - 1.7e-14 53.6 0.0 3e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|336476397|ref|YP_004615538.1| - 0.00012 21.3 0.1 0.00032 19.9 0.1 1.7 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) DUF4265 PF14085.1 gi|336476397|ref|YP_004615538.1| - 0.038 13.7 0.1 0.51 10.0 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) Peptidase_M50 PF02163.17 gi|336476398|ref|YP_004615539.1| - 6e-29 100.3 0.0 3.1e-28 98.0 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|336476398|ref|YP_004615539.1| - 4.1e-21 74.6 0.1 6.6e-10 38.7 0.0 2.3 2 0 0 2 2 2 2 PDZ domain GRASP55_65 PF04495.9 gi|336476398|ref|YP_004615539.1| - 2.4e-07 30.8 0.1 1.6e-06 28.1 0.0 2.0 1 1 1 2 2 2 1 GRASP55/65 PDZ-like domain PDZ_1 PF12812.2 gi|336476398|ref|YP_004615539.1| - 4.3e-05 23.3 0.0 0.3 10.9 0.0 2.5 2 0 0 2 2 2 2 PDZ-like domain PDZ PF00595.19 gi|336476398|ref|YP_004615539.1| - 0.00014 21.9 1.3 0.0037 17.3 0.0 2.7 3 0 0 3 3 3 1 PDZ domain (Also known as DHR or GLGF) CutA1 PF03091.10 gi|336476399|ref|YP_004615540.1| - 4.5e-30 103.3 0.1 5e-30 103.1 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Fumerase PF05681.9 gi|336476400|ref|YP_004615541.1| - 7.4e-98 326.9 0.1 8.4e-98 326.7 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|336476401|ref|YP_004615542.1| - 9.3e-53 178.4 0.0 1.1e-52 178.2 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus T2SE PF00437.15 gi|336476402|ref|YP_004615543.1| - 5.6e-52 176.3 0.0 9.2e-52 175.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|336476402|ref|YP_004615543.1| - 0.0027 18.5 1.3 0.47 11.2 0.0 3.6 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|336476402|ref|YP_004615543.1| - 0.034 13.6 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|336476402|ref|YP_004615543.1| - 0.063 13.5 0.2 1.4 9.2 0.0 2.8 3 0 0 3 3 3 0 ABC transporter CbiA PF01656.18 gi|336476403|ref|YP_004615544.1| - 4e-30 104.6 0.4 5.4e-30 104.2 0.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336476403|ref|YP_004615544.1| - 1.9e-21 76.6 0.0 2.9e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|336476403|ref|YP_004615544.1| - 4e-09 36.0 1.5 0.00038 19.7 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|336476403|ref|YP_004615544.1| - 5.8e-08 32.1 3.5 1.8e-06 27.2 0.6 3.4 1 1 1 3 3 3 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|336476403|ref|YP_004615544.1| - 3.3e-07 29.6 6.2 3.5e-05 22.9 1.4 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase YhjQ PF06564.7 gi|336476403|ref|YP_004615544.1| - 9e-06 25.2 0.0 2.9e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein ParA PF10609.4 gi|336476403|ref|YP_004615544.1| - 0.00076 19.3 0.1 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_19 PF13245.1 gi|336476403|ref|YP_004615544.1| - 0.00089 18.9 0.1 0.069 12.9 0.4 2.8 3 0 0 3 3 3 1 Part of AAA domain AAA_24 PF13479.1 gi|336476403|ref|YP_004615544.1| - 0.0016 18.0 1.8 0.011 15.3 0.6 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|336476403|ref|YP_004615544.1| - 0.0043 16.4 0.5 0.0075 15.6 0.3 1.5 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|336476403|ref|YP_004615544.1| - 0.0099 14.9 0.9 0.058 12.4 0.3 2.1 2 0 0 2 2 2 1 VirC1 protein Chromosome_seg PF13889.1 gi|336476403|ref|YP_004615544.1| - 0.017 14.9 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Chromosome segregation during meiosis FTHFS PF01268.14 gi|336476403|ref|YP_004615544.1| - 0.029 12.3 0.7 0.051 11.5 0.5 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase SRP54 PF00448.17 gi|336476403|ref|YP_004615544.1| - 0.036 13.4 2.3 1.9 7.9 0.7 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_26 PF13500.1 gi|336476403|ref|YP_004615544.1| - 0.086 12.4 0.1 0.086 12.4 0.1 1.7 2 1 0 2 2 1 0 AAA domain HHH PF00633.18 gi|336476404|ref|YP_004615545.1| - 0.0094 15.6 0.3 0.044 13.4 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif PhnH PF05845.7 gi|336476404|ref|YP_004615545.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnH) DUF4445 PF14574.1 gi|336476405|ref|YP_004615546.1| - 2.5e-114 381.7 2.7 3.6e-114 381.1 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|336476405|ref|YP_004615546.1| - 1.4e-07 31.7 9.1 2.9e-07 30.7 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476405|ref|YP_004615546.1| - 1.6e-07 30.8 12.2 5.2e-05 22.9 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336476405|ref|YP_004615546.1| - 9.3e-07 28.6 9.9 1.8e-06 27.7 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476405|ref|YP_004615546.1| - 3.2e-06 26.4 13.9 0.00017 21.0 2.2 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476405|ref|YP_004615546.1| - 5.4e-06 26.5 10.1 1.1e-05 25.6 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476405|ref|YP_004615546.1| - 1.1e-05 25.1 11.0 8e-05 22.3 8.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476405|ref|YP_004615546.1| - 0.00015 21.4 12.5 0.0094 15.8 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476405|ref|YP_004615546.1| - 0.001 19.7 11.4 0.12 13.1 1.7 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|336476405|ref|YP_004615546.1| - 0.0027 17.6 9.1 0.021 14.8 0.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476405|ref|YP_004615546.1| - 0.003 17.8 3.9 0.12 12.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476405|ref|YP_004615546.1| - 0.027 14.7 14.2 0.036 14.4 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336476405|ref|YP_004615546.1| - 0.066 13.8 14.6 0.89 10.2 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336476405|ref|YP_004615546.1| - 0.3 11.5 12.2 2.7 8.4 1.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Hydantoinase_A PF01968.13 gi|336476406|ref|YP_004615547.1| - 7.2e-75 251.7 0.1 7.4e-73 245.1 0.0 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|336476406|ref|YP_004615547.1| - 5.2e-40 136.8 2.3 2.4e-38 131.3 0.0 2.8 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|336476406|ref|YP_004615547.1| - 0.00013 20.4 1.4 0.23 9.7 0.2 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|336476406|ref|YP_004615547.1| - 0.00014 21.2 0.0 0.00077 18.8 0.0 2.2 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|336476406|ref|YP_004615547.1| - 0.012 14.5 0.2 0.16 10.8 0.0 2.3 2 0 0 2 2 2 0 StbA protein MgtE PF01769.11 gi|336476407|ref|YP_004615548.1| - 3e-28 98.7 8.5 6.2e-28 97.7 5.9 1.5 1 0 0 1 1 1 1 Divalent cation transporter CBS PF00571.23 gi|336476407|ref|YP_004615548.1| - 2.6e-17 62.3 1.4 3.2e-08 33.2 0.4 2.4 2 0 0 2 2 2 2 CBS domain DUF1638 PF07796.6 gi|336476408|ref|YP_004615549.1| - 5.6e-35 120.4 0.1 7.4e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1638 PF07796.6 gi|336476409|ref|YP_004615550.1| - 2.4e-34 118.3 0.1 3.9e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Hydantoinase_A PF01968.13 gi|336476410|ref|YP_004615551.1| - 2.6e-79 266.3 0.9 7e-79 264.9 0.0 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|336476410|ref|YP_004615551.1| - 1.8e-41 141.6 6.4 3.1e-39 134.3 0.9 2.8 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|336476410|ref|YP_004615551.1| - 2.8e-06 25.9 2.7 0.026 12.8 0.3 2.4 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|336476410|ref|YP_004615551.1| - 0.044 12.7 0.0 0.099 11.5 0.0 1.5 1 0 0 1 1 1 0 StbA protein BcrAD_BadFG PF01869.15 gi|336476410|ref|YP_004615551.1| - 0.045 13.0 3.0 0.34 10.1 1.2 2.8 2 1 1 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family MTTB PF06253.6 gi|336476411|ref|YP_004615552.1| - 4.9e-58 196.1 0.0 5.8e-58 195.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) MTTB PF06253.6 gi|336476412|ref|YP_004615553.1| - 3.5e-22 77.8 0.0 3.8e-22 77.7 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.14 gi|336476413|ref|YP_004615554.1| - 7.8e-22 77.3 0.6 1.5e-21 76.4 0.4 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|336476413|ref|YP_004615554.1| - 7.6e-19 67.5 1.8 8.3e-19 67.4 0.2 1.9 2 0 0 2 2 2 1 B12 binding domain SpoVAD PF07451.6 gi|336476413|ref|YP_004615554.1| - 0.031 12.7 0.1 0.041 12.3 0.1 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) UPF0180 PF03698.8 gi|336476413|ref|YP_004615554.1| - 0.17 11.7 1.7 0.75 9.6 0.1 2.6 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0180) FumaraseC_C PF10415.4 gi|336476413|ref|YP_004615554.1| - 1 9.5 4.2 1.2 9.2 0.6 2.4 2 0 0 2 2 2 0 Fumarase C C-terminus Fer4_13 PF13370.1 gi|336476414|ref|YP_004615555.1| - 1.8e-18 66.6 8.4 2.1e-18 66.4 5.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336476414|ref|YP_004615555.1| - 1.1e-09 38.7 6.4 1.3e-09 38.4 4.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|336476414|ref|YP_004615555.1| - 0.0027 17.9 1.5 0.0035 17.5 1.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476414|ref|YP_004615555.1| - 0.01 15.6 1.4 0.01 15.6 1.0 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476414|ref|YP_004615555.1| - 0.062 13.1 2.1 0.091 12.5 1.5 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain E_raikovi_mat PF06360.6 gi|336476414|ref|YP_004615555.1| - 0.18 12.0 0.5 0.18 12.0 0.4 1.9 2 0 0 2 2 2 0 Euplotes raikovi mating pheromone Fer4_7 PF12838.2 gi|336476414|ref|YP_004615555.1| - 0.58 10.5 4.5 1.3 9.4 3.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476414|ref|YP_004615555.1| - 1.6 8.4 8.9 0.12 12.0 2.1 2.1 3 0 0 3 3 3 0 4Fe-4S binding domain PHP_C PF13263.1 gi|336476415|ref|YP_004615556.1| - 5.3e-19 67.4 0.0 9.5e-19 66.6 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|336476415|ref|YP_004615556.1| - 9.5e-13 48.3 0.4 1.5e-12 47.6 0.3 1.5 1 1 0 1 1 1 1 PHP domain MMR_HSR1 PF01926.18 gi|336476416|ref|YP_004615557.1| - 3.1e-21 75.5 0.0 1.1e-20 73.7 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|336476416|ref|YP_004615557.1| - 8.2e-12 45.0 0.2 2e-11 43.8 0.1 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|336476416|ref|YP_004615557.1| - 1.2e-09 37.6 0.2 2.8e-09 36.4 0.1 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|336476416|ref|YP_004615557.1| - 1.3e-06 27.9 0.1 3.1e-05 23.4 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|336476416|ref|YP_004615557.1| - 0.00069 19.1 0.9 0.011 15.2 0.6 2.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|336476416|ref|YP_004615557.1| - 0.0011 18.2 0.1 0.0026 17.0 0.0 1.7 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|336476416|ref|YP_004615557.1| - 0.003 18.0 0.0 0.0087 16.5 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein GBP PF02263.14 gi|336476416|ref|YP_004615557.1| - 0.011 14.7 0.2 1.1 8.2 0.1 2.5 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_14 PF13173.1 gi|336476416|ref|YP_004615557.1| - 0.014 15.2 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|336476416|ref|YP_004615557.1| - 0.02 14.5 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NOG1 PF06858.9 gi|336476416|ref|YP_004615557.1| - 0.023 14.5 0.2 0.023 14.5 0.1 1.9 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) AAA_23 PF13476.1 gi|336476416|ref|YP_004615557.1| - 0.5 10.6 6.7 16 5.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF2209 PF09974.4 gi|336476417|ref|YP_004615558.1| - 1.1e-43 148.3 0.9 1.3e-43 148.1 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DUF2982 PF11201.3 gi|336476417|ref|YP_004615558.1| - 0.07 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2982) tRNA_int_endo PF01974.12 gi|336476418|ref|YP_004615559.1| - 1.7e-46 155.9 1.7 1.2e-23 82.7 0.1 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|336476418|ref|YP_004615559.1| - 2.2e-38 129.6 2.4 8.4e-21 73.3 0.2 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|336476418|ref|YP_004615559.1| - 0.0012 18.9 0.0 0.0024 18.0 0.0 1.5 1 0 0 1 1 1 1 Sen15 protein GATase_3 PF07685.9 gi|336476419|ref|YP_004615560.1| - 1.1e-31 109.5 0.8 1.9e-31 108.7 0.5 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|336476419|ref|YP_004615560.1| - 2.7e-21 75.8 0.0 4.4e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|336476419|ref|YP_004615560.1| - 1.7e-16 60.4 0.2 9.7e-13 48.1 0.0 2.5 1 1 1 2 2 2 2 AAA domain SNO PF01174.14 gi|336476419|ref|YP_004615560.1| - 0.12 11.9 0.0 0.32 10.6 0.0 1.7 1 1 0 1 1 1 0 SNO glutamine amidotransferase family Fer4_NifH PF00142.13 gi|336476420|ref|YP_004615561.1| - 6.9e-90 300.9 1.3 8.2e-90 300.6 0.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|336476420|ref|YP_004615561.1| - 2.5e-11 43.3 0.0 3.5e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|336476420|ref|YP_004615561.1| - 6.4e-08 31.9 0.1 1.6e-07 30.6 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|336476420|ref|YP_004615561.1| - 2.5e-06 27.5 0.0 4.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336476420|ref|YP_004615561.1| - 8.2e-05 22.1 0.2 0.00016 21.2 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|336476420|ref|YP_004615561.1| - 0.00013 20.8 0.1 0.00022 20.1 0.1 1.2 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|336476420|ref|YP_004615561.1| - 0.00035 19.7 0.1 0.0081 15.2 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.17 gi|336476420|ref|YP_004615561.1| - 0.00071 19.0 0.3 0.0024 17.3 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|336476420|ref|YP_004615561.1| - 0.001 19.0 0.0 0.083 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|336476420|ref|YP_004615561.1| - 0.0023 16.8 0.0 0.0041 16.0 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_25 PF13481.1 gi|336476420|ref|YP_004615561.1| - 0.0042 16.5 0.0 0.0072 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336476420|ref|YP_004615561.1| - 0.0044 17.1 0.0 0.16 12.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|336476420|ref|YP_004615561.1| - 0.0076 15.9 0.2 0.028 14.1 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CPSase_L_chain PF00289.17 gi|336476420|ref|YP_004615561.1| - 0.011 15.7 0.1 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AAA_30 PF13604.1 gi|336476420|ref|YP_004615561.1| - 0.025 14.1 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|336476420|ref|YP_004615561.1| - 0.037 13.6 0.1 0.057 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336476420|ref|YP_004615561.1| - 0.07 12.5 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|336476420|ref|YP_004615561.1| - 0.087 13.0 0.0 0.28 11.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.12 gi|336476420|ref|YP_004615561.1| - 0.094 12.2 0.1 2.6 7.5 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|336476420|ref|YP_004615561.1| - 0.23 12.2 1.4 0.72 10.6 0.6 2.1 2 1 0 2 2 2 0 AAA domain Oxidored_nitro PF00148.14 gi|336476421|ref|YP_004615562.1| - 1.2e-16 60.3 0.1 2e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF2373 PF10180.4 gi|336476421|ref|YP_004615562.1| - 0.078 12.5 0.1 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2373) Mur_ligase_M PF08245.7 gi|336476422|ref|YP_004615563.1| - 5.2e-06 26.6 0.7 3.7e-05 23.8 0.5 2.2 1 1 0 1 1 1 1 Mur ligase middle domain CbiX PF01903.12 gi|336476423|ref|YP_004615564.1| - 4.7e-29 100.6 0.0 5.3e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|336476423|ref|YP_004615564.1| - 7.9e-07 28.4 0.0 8.2e-07 28.3 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|336476423|ref|YP_004615564.1| - 0.001 18.0 0.0 0.0013 17.7 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase DUF2150 PF09920.4 gi|336476424|ref|YP_004615565.1| - 6.9e-65 218.2 6.4 7.9e-65 218.0 4.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DltD_C PF04914.7 gi|336476424|ref|YP_004615565.1| - 0.058 13.2 0.4 0.17 11.7 0.1 1.8 2 0 0 2 2 2 0 DltD C-terminal region UPF0179 PF03684.8 gi|336476425|ref|YP_004615566.1| - 1.4e-49 167.3 8.1 1.5e-49 167.2 5.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|336476425|ref|YP_004615566.1| - 0.021 14.8 0.4 0.021 14.8 0.3 2.1 2 0 0 2 2 2 0 Transposase DDE domain Fe-ADH_2 PF13685.1 gi|336476426|ref|YP_004615567.1| - 1.1e-68 231.2 6.0 1.4e-68 230.9 4.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|336476426|ref|YP_004615567.1| - 8.8e-29 100.2 7.4 1.7e-28 99.3 5.2 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|336476426|ref|YP_004615567.1| - 3.9e-14 52.2 0.5 9.7e-14 50.9 0.4 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.12 gi|336476427|ref|YP_004615568.1| - 4.1e-94 315.6 24.1 4.5e-94 315.5 16.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF95 PF01944.12 gi|336476428|ref|YP_004615569.1| - 5.8e-36 123.7 19.1 6.8e-36 123.5 13.2 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF1297 PF06973.7 gi|336476429|ref|YP_004615570.1| - 1e-79 266.2 0.0 1.4e-79 265.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|336476429|ref|YP_004615570.1| - 3.4e-43 146.3 0.0 5.4e-43 145.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|336476429|ref|YP_004615570.1| - 0.00041 20.1 0.0 0.078 12.7 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain GTP_EFTU PF00009.22 gi|336476430|ref|YP_004615571.1| - 1.1e-44 152.0 0.3 1.8e-44 151.4 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|336476430|ref|YP_004615571.1| - 2.2e-29 101.3 0.3 4.6e-29 100.3 0.2 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|336476430|ref|YP_004615571.1| - 3.6e-05 23.7 0.8 0.00012 22.1 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336476430|ref|YP_004615571.1| - 0.00016 21.6 0.0 0.0004 20.3 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|336476430|ref|YP_004615571.1| - 0.0034 16.8 4.8 0.67 9.4 0.0 2.7 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|336476430|ref|YP_004615571.1| - 0.0039 16.4 2.0 0.98 8.6 0.5 2.9 1 1 1 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|336476430|ref|YP_004615571.1| - 0.019 15.4 0.1 0.12 12.9 0.1 2.1 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|336476430|ref|YP_004615571.1| - 0.036 13.8 0.2 2.6 7.8 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Nop10p PF04135.7 gi|336476430|ref|YP_004615571.1| - 0.07 12.8 0.9 0.13 12.0 0.6 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family DZR PF12773.2 gi|336476430|ref|YP_004615571.1| - 0.1 12.4 1.2 0.22 11.3 0.8 1.5 1 0 0 1 1 1 0 Double zinc ribbon cobW PF02492.14 gi|336476430|ref|YP_004615571.1| - 0.66 9.3 3.7 1.9 7.8 0.1 2.8 3 1 1 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain Fcf1 PF04900.7 gi|336476431|ref|YP_004615572.1| - 1.5e-08 34.6 0.1 2e-08 34.2 0.1 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|336476431|ref|YP_004615572.1| - 0.0017 18.4 0.2 0.011 15.7 0.0 1.9 1 1 1 2 2 2 1 PIN domain PIN PF01850.16 gi|336476431|ref|YP_004615572.1| - 0.015 15.5 0.4 0.02 15.2 0.3 1.2 1 0 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.12 gi|336476432|ref|YP_004615573.1| - 1.3e-19 70.0 0.1 2.3e-19 69.2 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|336476432|ref|YP_004615573.1| - 3e-12 46.4 0.3 3e-12 46.4 0.2 1.6 2 0 0 2 2 2 1 S1 RNA binding domain DUF826 PF05696.6 gi|336476432|ref|YP_004615573.1| - 0.0047 17.0 0.1 0.0087 16.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF826) Spt4 PF06093.8 gi|336476433|ref|YP_004615574.1| - 3.6e-14 52.3 0.1 4.5e-14 52.0 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger TF_Zn_Ribbon PF08271.7 gi|336476433|ref|YP_004615574.1| - 0.0031 16.7 0.1 0.12 11.7 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|336476433|ref|YP_004615574.1| - 0.007 16.0 1.5 0.0098 15.5 1.0 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|336476433|ref|YP_004615574.1| - 0.019 14.1 2.0 0.12 11.5 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336476433|ref|YP_004615574.1| - 0.034 13.9 0.7 0.05 13.4 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon Laminin_EGF PF00053.19 gi|336476433|ref|YP_004615574.1| - 0.055 13.4 0.5 0.064 13.2 0.4 1.1 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) Prok-RING_4 PF14447.1 gi|336476433|ref|YP_004615574.1| - 0.11 12.0 0.2 0.14 11.7 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-C3HC4_2 PF13923.1 gi|336476433|ref|YP_004615574.1| - 0.15 12.0 3.0 0.22 11.5 2.1 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|336476433|ref|YP_004615574.1| - 0.24 11.1 2.4 0.35 10.6 1.6 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-RING_4 PF14570.1 gi|336476433|ref|YP_004615574.1| - 0.38 10.3 2.4 0.57 9.8 1.7 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Rad50_zn_hook PF04423.9 gi|336476433|ref|YP_004615574.1| - 0.74 9.3 3.6 1.1 8.7 0.8 2.1 2 1 0 2 2 2 0 Rad50 zinc hook motif Prim_Zn_Ribbon PF08273.7 gi|336476433|ref|YP_004615574.1| - 4 7.5 7.3 2.4 8.2 1.0 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF359 PF04019.7 gi|336476434|ref|YP_004615575.1| - 7.6e-39 131.8 0.1 1e-38 131.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.14 gi|336476435|ref|YP_004615576.1| - 9.6e-28 95.8 0.1 1.2e-27 95.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|336476436|ref|YP_004615577.1| - 1.2e-21 76.2 2.0 1.3e-21 76.1 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|336476436|ref|YP_004615577.1| - 0.00012 21.7 0.7 0.00014 21.5 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|336476436|ref|YP_004615577.1| - 0.00024 20.8 0.3 0.00024 20.8 0.2 1.1 1 0 0 1 1 1 1 IBR domain Ribosomal_L37e PF01907.14 gi|336476436|ref|YP_004615577.1| - 0.00031 20.4 1.8 0.00034 20.3 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e Nudix_N_2 PF14803.1 gi|336476436|ref|YP_004615577.1| - 0.00054 19.5 5.5 0.0036 16.9 3.2 2.1 1 1 1 2 2 2 2 Nudix N-terminal GFA PF04828.9 gi|336476436|ref|YP_004615577.1| - 0.0019 18.0 1.8 0.0082 16.0 0.0 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|336476436|ref|YP_004615577.1| - 0.0059 16.0 7.9 0.052 13.0 5.5 2.0 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|336476436|ref|YP_004615577.1| - 0.013 15.1 0.5 0.014 15.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2082 PF09855.4 gi|336476436|ref|YP_004615577.1| - 0.013 15.2 3.2 0.065 13.0 0.4 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF1936 PF09151.5 gi|336476436|ref|YP_004615577.1| - 0.017 14.6 0.9 0.17 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-ribbon_3 PF13248.1 gi|336476436|ref|YP_004615577.1| - 0.019 14.1 7.3 0.08 12.1 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336476436|ref|YP_004615577.1| - 0.021 14.4 1.7 0.03 13.9 1.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|336476436|ref|YP_004615577.1| - 0.023 14.1 0.7 0.037 13.4 0.5 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.17 gi|336476436|ref|YP_004615577.1| - 0.031 13.9 1.1 0.034 13.8 0.8 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) A2L_zn_ribbon PF08792.5 gi|336476436|ref|YP_004615577.1| - 0.031 13.7 3.4 0.35 10.3 1.5 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|336476436|ref|YP_004615577.1| - 0.042 13.6 0.8 0.041 13.6 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS1595 PF12760.2 gi|336476436|ref|YP_004615577.1| - 0.055 13.2 3.9 0.081 12.7 2.6 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336476436|ref|YP_004615577.1| - 0.057 12.7 2.1 0.096 12.0 1.5 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.11 gi|336476436|ref|YP_004615577.1| - 0.069 12.8 5.1 0.28 10.8 3.5 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit NOB1_Zn_bind PF08772.6 gi|336476436|ref|YP_004615577.1| - 0.077 12.8 5.9 0.079 12.7 0.3 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like GCC2_GCC3 PF07699.8 gi|336476436|ref|YP_004615577.1| - 0.1 12.1 2.5 0.15 11.6 1.6 1.5 1 1 0 1 1 1 0 GCC2 and GCC3 Lar_restr_allev PF14354.1 gi|336476436|ref|YP_004615577.1| - 0.1 12.9 1.2 0.14 12.4 0.8 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|336476436|ref|YP_004615577.1| - 0.19 11.4 2.2 1.1 9.0 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Auto_anti-p27 PF06677.7 gi|336476436|ref|YP_004615577.1| - 0.22 11.3 2.9 0.39 10.5 2.0 1.4 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_4 PF13717.1 gi|336476436|ref|YP_004615577.1| - 0.31 10.7 3.4 12 5.6 2.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336476436|ref|YP_004615577.1| - 0.32 10.6 3.6 11 5.6 2.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|336476436|ref|YP_004615577.1| - 0.36 10.3 0.1 0.36 10.3 0.1 1.9 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-RING_3 PF14369.1 gi|336476436|ref|YP_004615577.1| - 0.61 10.1 2.5 0.78 9.7 0.2 1.8 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|336476436|ref|YP_004615577.1| - 0.65 9.5 10.1 32 4.1 7.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336476436|ref|YP_004615577.1| - 0.71 9.8 3.8 6.5 6.7 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF2072 PF09845.4 gi|336476436|ref|YP_004615577.1| - 0.85 9.5 3.0 1 9.2 0.1 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-CCHC_4 PF14392.1 gi|336476436|ref|YP_004615577.1| - 1 9.0 4.3 1.1 9.0 0.6 2.1 2 0 0 2 2 2 0 Zinc knuckle ADK_lid PF05191.9 gi|336476436|ref|YP_004615577.1| - 1.8 8.3 6.0 8.1 6.2 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ISL3 PF14690.1 gi|336476436|ref|YP_004615577.1| - 3 7.9 6.5 4.3 7.4 0.5 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Peptidase_M22 PF00814.20 gi|336476437|ref|YP_004615578.1| - 1.3e-88 296.9 0.0 1.7e-88 296.5 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.17 gi|336476437|ref|YP_004615578.1| - 9.8e-09 34.8 0.0 1.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|336476437|ref|YP_004615578.1| - 1.3e-08 34.1 0.0 1.5e-07 30.7 0.0 2.1 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|336476437|ref|YP_004615578.1| - 1.4e-08 34.8 0.0 4.8e-06 26.4 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|336476437|ref|YP_004615578.1| - 2.6e-07 30.0 0.0 4.6e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.15 gi|336476437|ref|YP_004615578.1| - 0.0011 18.5 0.1 0.002 17.7 0.1 1.5 1 0 0 1 1 1 1 Choline/ethanolamine kinase EcKinase PF02958.15 gi|336476437|ref|YP_004615578.1| - 0.0033 16.5 0.0 0.0052 15.9 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|336476437|ref|YP_004615578.1| - 0.0056 15.3 0.0 0.0081 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Pkinase_Tyr PF07714.12 gi|336476437|ref|YP_004615578.1| - 0.0057 15.7 0.0 0.0088 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.6 gi|336476437|ref|YP_004615578.1| - 0.012 14.9 0.1 0.023 13.9 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) CmcH_NodU PF02543.10 gi|336476437|ref|YP_004615578.1| - 0.013 14.6 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase Ham1p_like PF01725.11 gi|336476438|ref|YP_004615579.1| - 3.5e-51 173.2 0.0 3.9e-51 173.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Cyclase PF04199.8 gi|336476439|ref|YP_004615580.1| - 9.6e-21 74.2 0.1 7.6e-20 71.2 0.1 1.9 1 1 0 1 1 1 1 Putative cyclase PHP PF02811.14 gi|336476440|ref|YP_004615581.1| - 5.5e-15 55.5 0.0 6.8e-15 55.2 0.0 1.2 1 1 0 1 1 1 1 PHP domain DUF3280 PF11684.3 gi|336476440|ref|YP_004615581.1| - 0.12 12.5 0.4 5.2 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2380) DDE_Tnp_1 PF01609.16 gi|336476441|ref|YP_004615582.1| - 2e-17 63.4 3.2 7.2e-17 61.6 2.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|336476441|ref|YP_004615582.1| - 0.00018 21.1 0.9 0.00028 20.5 0.6 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|336476441|ref|YP_004615582.1| - 0.00028 20.9 1.5 0.00054 19.9 1.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|336476441|ref|YP_004615582.1| - 0.0011 19.1 1.9 0.0012 19.0 0.3 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|336476441|ref|YP_004615582.1| - 0.0092 15.7 0.9 0.02 14.6 0.6 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|336476441|ref|YP_004615582.1| - 0.081 12.8 0.1 0.22 11.4 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) FtsJ PF01728.14 gi|336476442|ref|YP_004615583.1| - 7e-58 195.5 0.0 8.6e-58 195.3 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|336476442|ref|YP_004615583.1| - 4.8e-13 48.6 1.3 8.4e-13 47.8 0.9 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.1 gi|336476442|ref|YP_004615583.1| - 4.6e-06 26.4 0.0 9.7e-06 25.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336476442|ref|YP_004615583.1| - 0.0003 21.3 0.1 0.0073 16.8 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476442|ref|YP_004615583.1| - 0.0038 16.8 0.0 0.045 13.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336476442|ref|YP_004615583.1| - 0.12 12.3 0.0 0.69 9.9 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain eRF1_2 PF03464.10 gi|336476444|ref|YP_004615585.1| - 1.1e-05 25.8 0.0 2.1e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 WEMBL PF05701.6 gi|336476444|ref|YP_004615585.1| - 0.00049 18.6 2.2 0.00067 18.2 1.5 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Laminin_II PF06009.7 gi|336476444|ref|YP_004615585.1| - 0.0012 18.6 1.8 0.0022 17.7 1.3 1.4 1 0 0 1 1 1 1 Laminin Domain II IncA PF04156.9 gi|336476444|ref|YP_004615585.1| - 0.0033 17.0 3.7 0.0061 16.1 2.5 1.5 1 0 0 1 1 1 1 IncA protein TMF_TATA_bd PF12325.3 gi|336476444|ref|YP_004615585.1| - 0.0037 16.9 6.8 0.0095 15.6 4.7 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding HR1 PF02185.11 gi|336476444|ref|YP_004615585.1| - 0.0038 16.9 8.0 0.0043 16.7 2.7 2.4 1 1 1 2 2 2 1 Hr1 repeat MscS_porin PF12795.2 gi|336476444|ref|YP_004615585.1| - 0.005 16.2 3.9 0.0073 15.6 2.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|336476444|ref|YP_004615585.1| - 0.0094 15.4 4.5 0.0094 15.4 3.1 1.5 2 0 0 2 2 1 1 Intermediate filament protein FH2 PF02181.18 gi|336476444|ref|YP_004615585.1| - 0.011 14.6 1.7 0.019 13.8 1.2 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain CENP-Q PF13094.1 gi|336476444|ref|YP_004615585.1| - 0.012 15.6 1.9 0.023 14.7 1.3 1.6 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit ATP-synt_DE PF00401.15 gi|336476444|ref|YP_004615585.1| - 0.015 15.1 5.8 0.033 14.0 4.0 1.6 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Mnd1 PF03962.10 gi|336476444|ref|YP_004615585.1| - 0.016 14.8 3.6 0.034 13.7 2.5 1.5 1 0 0 1 1 1 0 Mnd1 family Exonuc_VII_S PF02609.11 gi|336476444|ref|YP_004615585.1| - 0.021 14.6 3.1 2.3 8.0 0.4 2.8 2 0 0 2 2 2 0 Exonuclease VII small subunit Baculo_PEP_C PF04513.7 gi|336476444|ref|YP_004615585.1| - 0.021 14.6 1.4 0.072 12.9 0.8 1.9 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Bacillus_HBL PF05791.6 gi|336476444|ref|YP_004615585.1| - 0.024 14.0 5.7 0.19 11.0 2.4 2.2 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF4200 PF13863.1 gi|336476444|ref|YP_004615585.1| - 0.028 14.3 9.2 0.06 13.2 6.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DnaI_N PF07319.6 gi|336476444|ref|YP_004615585.1| - 0.041 14.1 2.9 0.28 11.4 0.0 3.1 2 1 0 3 3 3 0 Primosomal protein DnaI N-terminus DUF3584 PF12128.3 gi|336476444|ref|YP_004615585.1| - 0.043 11.1 3.7 0.06 10.6 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BRE1 PF08647.6 gi|336476444|ref|YP_004615585.1| - 0.044 13.7 4.6 0.13 12.2 3.2 1.8 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase MutS_IV PF05190.13 gi|336476444|ref|YP_004615585.1| - 0.053 13.6 2.8 0.32 11.2 0.1 2.7 2 0 0 2 2 2 0 MutS family domain IV APG17 PF04108.7 gi|336476444|ref|YP_004615585.1| - 0.063 12.0 5.4 0.078 11.7 2.9 1.7 2 0 0 2 2 2 0 Autophagy protein Apg17 DUF342 PF03961.8 gi|336476444|ref|YP_004615585.1| - 0.11 10.8 7.6 0.046 12.1 3.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF342) DUF2968 PF11180.3 gi|336476444|ref|YP_004615585.1| - 0.12 11.7 4.2 0.078 12.3 1.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) AAA_13 PF13166.1 gi|336476444|ref|YP_004615585.1| - 0.15 10.4 7.0 0.12 10.7 3.6 1.7 2 0 0 2 2 2 0 AAA domain RRF_GI PF12614.3 gi|336476444|ref|YP_004615585.1| - 0.18 11.6 3.3 6.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Ribosome recycling factor V_ATPase_I PF01496.14 gi|336476444|ref|YP_004615585.1| - 0.2 9.4 2.5 0.25 9.1 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ADIP PF11559.3 gi|336476444|ref|YP_004615585.1| - 0.29 11.0 6.8 0.23 11.3 2.1 2.2 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding APG6 PF04111.7 gi|336476444|ref|YP_004615585.1| - 0.3 10.1 5.3 0.43 9.5 3.7 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 LUC7 PF03194.10 gi|336476444|ref|YP_004615585.1| - 0.34 10.3 6.8 0.063 12.7 1.8 1.8 2 0 0 2 2 2 0 LUC7 N_terminus DUF869 PF05911.6 gi|336476444|ref|YP_004615585.1| - 0.66 8.1 8.4 1.1 7.3 5.8 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Tropomyosin_1 PF12718.2 gi|336476444|ref|YP_004615585.1| - 0.9 9.3 11.5 0.96 9.2 6.0 2.2 2 0 0 2 2 2 0 Tropomyosin like DUF4164 PF13747.1 gi|336476444|ref|YP_004615585.1| - 3 8.0 10.0 6.6 6.9 4.9 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) DUF2458 PF10454.4 gi|336476444|ref|YP_004615585.1| - 5.4 6.8 8.9 1.4 8.8 3.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2458) HSBP1 PF06825.7 gi|336476444|ref|YP_004615585.1| - 6.7 6.3 10.6 0.23 11.0 1.9 2.6 3 0 0 3 3 3 0 Heat shock factor binding protein 1 DFP PF04127.10 gi|336476445|ref|YP_004615586.1| - 1.2e-45 155.4 0.5 5.4e-44 150.0 0.1 2.3 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|336476445|ref|YP_004615586.1| - 1.5e-26 92.5 2.4 1.5e-26 92.5 0.6 1.8 2 0 0 2 2 2 1 Flavoprotein Helicase_C PF00271.26 gi|336476445|ref|YP_004615586.1| - 0.012 15.5 1.5 11 5.9 0.0 3.7 3 1 1 4 4 4 0 Helicase conserved C-terminal domain Pyr_redox PF00070.22 gi|336476445|ref|YP_004615586.1| - 0.016 15.5 0.4 0.29 11.5 0.0 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|336476445|ref|YP_004615586.1| - 0.018 15.0 0.1 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 NADH(P)-binding GHMP_kinases_N PF00288.21 gi|336476446|ref|YP_004615587.1| - 1.4e-09 37.8 0.6 2.7e-09 36.9 0.4 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|336476446|ref|YP_004615587.1| - 0.00091 19.3 0.8 0.0051 16.9 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal Amidase02_C PF12123.3 gi|336476446|ref|YP_004615587.1| - 0.12 12.0 0.0 0.44 10.2 0.0 1.9 2 0 0 2 2 2 0 N-acetylmuramoyl-l-alanine amidase DUF137 PF02006.11 gi|336476447|ref|YP_004615588.1| - 6e-71 237.5 1.2 7.3e-71 237.2 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Amidohydro_1 PF01979.15 gi|336476448|ref|YP_004615589.1| - 3e-58 198.0 0.4 4.1e-58 197.6 0.3 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336476448|ref|YP_004615589.1| - 2.3e-15 57.3 0.0 5.5e-14 52.8 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|336476448|ref|YP_004615589.1| - 4.7e-15 55.1 0.4 2.3e-14 52.9 0.2 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|336476448|ref|YP_004615589.1| - 9.3e-10 38.2 0.2 2.6e-07 30.1 0.0 2.8 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|336476448|ref|YP_004615589.1| - 5.1e-05 22.3 0.1 0.0002 20.4 0.0 1.8 2 0 0 2 2 2 1 Adenosine/AMP deaminase AdoHcyase PF05221.12 gi|336476449|ref|YP_004615590.1| - 1.9e-55 187.7 0.1 2.1e-55 187.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|336476449|ref|YP_004615590.1| - 1.3e-51 174.7 1.2 1.8e-51 174.2 0.2 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336476449|ref|YP_004615590.1| - 6.4e-09 35.2 0.1 1.3e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|336476449|ref|YP_004615590.1| - 1.3e-05 24.5 0.0 2.7e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|336476449|ref|YP_004615590.1| - 0.00049 19.6 0.9 0.0015 18.1 0.5 1.8 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|336476450|ref|YP_004615591.1| - 1.6e-29 101.2 0.7 1.8e-29 101.1 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.10 gi|336476451|ref|YP_004615592.1| - 3.6e-62 208.9 0.1 4.5e-62 208.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|336476451|ref|YP_004615592.1| - 1.3e-26 93.1 0.0 2.5e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|336476451|ref|YP_004615592.1| - 4.7e-25 87.1 0.0 8.5e-25 86.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 Fib_alpha PF08702.5 gi|336476451|ref|YP_004615592.1| - 0.15 12.1 0.4 2.2 8.3 0.0 2.6 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family RNA_pol_Rpb2_6 PF00562.23 gi|336476452|ref|YP_004615593.1| - 1.1e-122 409.5 0.0 1.3e-122 409.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|336476452|ref|YP_004615593.1| - 3.1e-28 97.8 0.2 7.3e-28 96.6 0.0 1.7 2 0 0 2 2 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|336476452|ref|YP_004615593.1| - 5.7e-22 77.2 0.7 1.2e-21 76.2 0.5 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|336476452|ref|YP_004615593.1| - 8.3e-14 51.2 0.4 2.1e-13 50.0 0.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-ribbon_3 PF13248.1 gi|336476452|ref|YP_004615593.1| - 0.0015 17.6 0.4 0.0029 16.7 0.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DUF1451 PF07295.6 gi|336476452|ref|YP_004615593.1| - 0.017 14.8 0.5 0.031 14.0 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Nudix_N_2 PF14803.1 gi|336476452|ref|YP_004615593.1| - 0.018 14.7 0.3 2.4 7.9 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|336476452|ref|YP_004615593.1| - 0.018 14.5 0.6 0.19 11.2 0.0 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|336476452|ref|YP_004615593.1| - 0.082 12.4 0.4 5.3 6.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336476452|ref|YP_004615593.1| - 0.1 11.9 3.6 0.5 9.7 2.5 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|336476452|ref|YP_004615593.1| - 0.14 11.9 0.1 0.29 10.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|336476452|ref|YP_004615593.1| - 0.56 9.7 3.1 2.4 7.7 2.1 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain RecR PF02132.10 gi|336476452|ref|YP_004615593.1| - 0.91 9.0 3.1 1.9 8.0 0.3 2.2 1 1 1 2 2 2 0 RecR protein RNA_pol_Rpb1_1 PF04997.7 gi|336476453|ref|YP_004615594.1| - 5.9e-88 295.3 0.1 1.7e-85 287.2 0.1 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|336476453|ref|YP_004615594.1| - 1.1e-65 220.6 0.0 1.8e-65 219.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_5 PF04998.12 gi|336476453|ref|YP_004615594.1| - 3e-31 108.7 0.4 5.5e-31 107.8 0.1 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|336476453|ref|YP_004615594.1| - 3.6e-31 107.0 0.0 7.5e-31 106.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|336476453|ref|YP_004615594.1| - 4.7e-29 101.1 0.0 8.8e-29 100.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 Lar_restr_allev PF14354.1 gi|336476453|ref|YP_004615594.1| - 1.8 8.9 4.6 0.92 9.8 0.1 2.7 3 0 0 3 3 3 0 Restriction alleviation protein Lar RNA_pol_Rpb1_5 PF04998.12 gi|336476454|ref|YP_004615595.1| - 5.7e-53 179.9 0.9 9e-53 179.3 0.6 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|336476454|ref|YP_004615595.1| - 0.12 11.9 0.1 0.42 10.1 0.0 2.0 1 0 0 1 1 1 0 NAC domain Ribosomal_L7Ae PF01248.21 gi|336476455|ref|YP_004615596.1| - 6.2e-15 54.4 0.0 8.3e-15 54.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|336476456|ref|YP_004615597.1| - 2.1e-20 72.0 6.3 1.9e-15 56.1 0.5 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|336476456|ref|YP_004615597.1| - 1.7e-12 46.9 3.3 1.5e-11 43.9 0.4 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|336476456|ref|YP_004615597.1| - 3.4e-05 23.3 4.0 0.0084 15.7 0.2 3.2 3 0 0 3 3 3 2 KH domain KH_4 PF13083.1 gi|336476456|ref|YP_004615597.1| - 5.1e-05 22.8 1.2 0.067 12.8 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|336476456|ref|YP_004615597.1| - 0.33 10.6 7.3 1.7 8.3 0.2 3.5 3 0 0 3 3 3 0 KH domain Ribosom_S12_S23 PF00164.20 gi|336476457|ref|YP_004615598.1| - 6.5e-37 125.6 0.1 7.4e-37 125.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|336476458|ref|YP_004615599.1| - 1.6e-37 128.3 4.3 1.9e-37 128.1 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|336476459|ref|YP_004615600.1| - 6.6e-60 201.7 0.4 1e-59 201.1 0.3 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|336476459|ref|YP_004615600.1| - 8e-32 109.3 0.1 1.5e-30 105.2 0.0 2.8 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|336476459|ref|YP_004615600.1| - 5.8e-24 83.7 1.8 9.6e-24 83.0 0.4 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|336476459|ref|YP_004615600.1| - 1e-22 79.7 0.0 3e-22 78.2 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|336476459|ref|YP_004615600.1| - 2.6e-15 56.2 0.7 8.7e-15 54.6 0.5 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336476459|ref|YP_004615600.1| - 4.7e-05 23.3 0.1 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|336476459|ref|YP_004615600.1| - 0.056 12.8 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Ras family Paramyxo_PCT PF14320.1 gi|336476459|ref|YP_004615600.1| - 0.057 12.3 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoprotein P region PCT disordered AAA_10 PF12846.2 gi|336476459|ref|YP_004615600.1| - 0.082 12.3 0.0 0.29 10.5 0.0 1.8 1 1 0 2 2 2 0 AAA-like domain SRPRB PF09439.5 gi|336476459|ref|YP_004615600.1| - 0.083 12.0 0.1 0.31 10.2 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|336476460|ref|YP_004615601.1| - 3.8e-57 192.7 0.0 5.3e-57 192.2 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|336476460|ref|YP_004615601.1| - 2.1e-31 108.0 0.8 7.9e-31 106.1 0.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|336476460|ref|YP_004615601.1| - 1.5e-18 66.6 0.8 4.3e-18 65.1 0.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336476460|ref|YP_004615601.1| - 2.3e-07 30.7 0.0 5.9e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|336476460|ref|YP_004615601.1| - 4.1e-07 30.5 0.0 6.2e-05 23.4 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|336476460|ref|YP_004615601.1| - 0.0005 19.6 0.1 0.0012 18.4 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|336476460|ref|YP_004615601.1| - 0.00087 19.1 0.0 0.71 9.6 0.0 2.5 1 1 0 2 2 2 2 Dynamin family FeoB_N PF02421.13 gi|336476460|ref|YP_004615601.1| - 0.012 14.8 0.1 0.39 9.9 0.1 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Ras PF00071.17 gi|336476460|ref|YP_004615601.1| - 0.013 14.9 0.2 0.095 12.0 0.0 2.2 2 0 0 2 2 2 0 Ras family Gtr1_RagA PF04670.7 gi|336476460|ref|YP_004615601.1| - 0.016 14.3 0.0 0.044 12.9 0.0 1.6 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Septin PF00735.13 gi|336476460|ref|YP_004615601.1| - 0.095 11.7 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Septin Ribosomal_S10 PF00338.17 gi|336476461|ref|YP_004615602.1| - 1.5e-29 101.6 0.0 1.6e-29 101.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e FAD_binding_3 PF01494.14 gi|336476462|ref|YP_004615603.1| - 3e-10 39.7 0.1 0.0011 18.1 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.7 gi|336476462|ref|YP_004615603.1| - 3.1e-08 32.9 0.0 7.6e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|336476462|ref|YP_004615603.1| - 1.5e-06 27.5 0.0 2.3e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336476462|ref|YP_004615603.1| - 0.00015 20.4 0.6 0.00015 20.4 0.4 1.6 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|336476462|ref|YP_004615603.1| - 0.00049 19.2 1.1 0.001 18.2 0.6 1.7 1 1 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|336476462|ref|YP_004615603.1| - 0.00057 19.8 0.2 0.0015 18.4 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|336476462|ref|YP_004615603.1| - 0.0014 17.6 2.0 0.12 11.2 0.6 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|336476462|ref|YP_004615603.1| - 0.0022 16.6 0.2 0.72 8.4 0.5 2.3 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|336476462|ref|YP_004615603.1| - 0.0081 16.0 7.0 0.045 13.6 4.8 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336476462|ref|YP_004615603.1| - 0.027 13.3 4.2 0.06 12.1 2.9 1.7 1 1 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|336476462|ref|YP_004615603.1| - 0.08 12.9 0.3 0.27 11.2 0.2 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF4434 PF14488.1 gi|336476462|ref|YP_004615603.1| - 0.12 12.0 0.1 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) FAD_binding_2 PF00890.19 gi|336476462|ref|YP_004615603.1| - 0.25 10.1 3.7 0.21 10.3 1.6 1.6 2 0 0 2 2 2 0 FAD binding domain PBP_like_2 PF12849.2 gi|336476463|ref|YP_004615604.1| - 8.2e-44 150.1 0.2 1.5e-43 149.2 0.1 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|336476463|ref|YP_004615604.1| - 4.5e-20 71.4 0.1 6.3e-20 70.9 0.0 1.3 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|336476463|ref|YP_004615604.1| - 5.2e-11 42.6 0.0 7.3e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336476463|ref|YP_004615604.1| - 0.072 12.7 0.0 0.78 9.4 0.0 2.2 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|336476464|ref|YP_004615605.1| - 7.7e-24 84.2 14.0 7.7e-24 84.2 9.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336476465|ref|YP_004615606.1| - 7.4e-31 107.2 0.0 1e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476465|ref|YP_004615606.1| - 1.6e-13 51.3 0.1 4.9e-11 43.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336476465|ref|YP_004615606.1| - 2.6e-07 30.0 0.2 2.8e-06 26.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336476465|ref|YP_004615606.1| - 0.00022 20.6 0.0 0.00041 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336476465|ref|YP_004615606.1| - 0.00027 20.1 0.0 0.00046 19.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|336476465|ref|YP_004615606.1| - 0.0005 19.2 0.8 0.16 11.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|336476465|ref|YP_004615606.1| - 0.00052 20.0 0.1 0.046 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336476465|ref|YP_004615606.1| - 0.00077 19.8 0.4 0.0049 17.2 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|336476465|ref|YP_004615606.1| - 0.0011 19.0 0.1 0.0059 16.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|336476465|ref|YP_004615606.1| - 0.0055 15.2 0.0 0.09 11.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|336476465|ref|YP_004615606.1| - 0.0089 15.9 0.0 0.015 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|336476465|ref|YP_004615606.1| - 0.0089 14.7 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Arch_ATPase PF01637.13 gi|336476465|ref|YP_004615606.1| - 0.015 15.0 0.2 0.25 11.0 0.2 2.2 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|336476465|ref|YP_004615606.1| - 0.018 15.2 0.0 0.22 11.7 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|336476465|ref|YP_004615606.1| - 0.019 14.6 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain Viral_helicase1 PF01443.13 gi|336476465|ref|YP_004615606.1| - 0.051 13.0 0.0 0.31 10.5 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_25 PF13481.1 gi|336476465|ref|YP_004615606.1| - 0.059 12.7 0.0 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336476465|ref|YP_004615606.1| - 0.078 13.8 0.2 0.18 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|336476465|ref|YP_004615606.1| - 0.078 13.2 0.0 0.14 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|336476465|ref|YP_004615606.1| - 0.14 12.3 0.0 0.55 10.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase PhoU PF01895.14 gi|336476466|ref|YP_004615607.1| - 2e-39 133.8 12.5 1.2e-21 76.9 1.8 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.22 gi|336476467|ref|YP_004615608.1| - 1.6e-33 115.9 0.0 3.4e-33 114.8 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|336476467|ref|YP_004615608.1| - 4.7e-16 59.5 0.0 9.6e-08 32.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|336476467|ref|YP_004615608.1| - 2.7e-05 24.5 0.4 4.7e-05 23.7 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336476467|ref|YP_004615608.1| - 5.4e-05 23.3 0.2 0.00029 20.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336476467|ref|YP_004615608.1| - 0.00012 21.5 0.2 0.00023 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|336476467|ref|YP_004615608.1| - 0.00025 21.2 0.1 0.0013 18.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|336476467|ref|YP_004615608.1| - 0.00028 20.6 0.0 0.00046 19.9 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|336476467|ref|YP_004615608.1| - 0.00032 20.7 0.0 0.00058 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|336476467|ref|YP_004615608.1| - 0.00038 20.0 0.1 0.0062 16.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|336476467|ref|YP_004615608.1| - 0.00044 18.8 0.0 0.00057 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336476467|ref|YP_004615608.1| - 0.00078 18.7 0.1 0.015 14.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Miro PF08477.8 gi|336476467|ref|YP_004615608.1| - 0.00092 19.7 0.0 0.0017 18.8 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|336476467|ref|YP_004615608.1| - 0.0011 18.1 0.1 0.0018 17.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|336476467|ref|YP_004615608.1| - 0.0023 17.0 0.1 0.0076 15.3 0.0 1.6 1 1 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|336476467|ref|YP_004615608.1| - 0.0024 17.7 0.0 0.034 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|336476467|ref|YP_004615608.1| - 0.0031 17.1 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336476467|ref|YP_004615608.1| - 0.0036 17.2 0.5 0.0052 16.7 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336476467|ref|YP_004615608.1| - 0.0048 16.4 0.0 0.0073 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336476467|ref|YP_004615608.1| - 0.0051 16.6 0.3 0.023 14.6 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336476467|ref|YP_004615608.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|336476467|ref|YP_004615608.1| - 0.0091 16.8 0.9 0.021 15.6 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336476467|ref|YP_004615608.1| - 0.01 14.8 0.0 0.03 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA ATPase domain MutS_V PF00488.16 gi|336476467|ref|YP_004615608.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 MutS domain V Mg_chelatase PF01078.16 gi|336476467|ref|YP_004615608.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|336476467|ref|YP_004615608.1| - 0.012 15.1 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|336476467|ref|YP_004615608.1| - 0.018 14.7 0.1 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|336476467|ref|YP_004615608.1| - 0.021 15.1 0.8 0.092 13.0 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336476467|ref|YP_004615608.1| - 0.025 13.9 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336476467|ref|YP_004615608.1| - 0.032 13.6 0.1 0.049 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain T2SE PF00437.15 gi|336476467|ref|YP_004615608.1| - 0.039 12.8 0.2 0.062 12.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.17 gi|336476467|ref|YP_004615608.1| - 0.045 13.1 0.4 0.085 12.2 0.2 1.5 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|336476467|ref|YP_004615608.1| - 0.056 13.1 0.4 0.11 12.1 0.3 1.5 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.17 gi|336476467|ref|YP_004615608.1| - 0.063 13.4 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DLIC PF05783.6 gi|336476467|ref|YP_004615608.1| - 0.067 11.8 0.0 0.088 11.4 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RNA12 PF10443.4 gi|336476467|ref|YP_004615608.1| - 0.078 11.4 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein PEPCK_ATP PF01293.15 gi|336476467|ref|YP_004615608.1| - 0.078 11.4 0.1 0.11 10.9 0.1 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase MobB PF03205.9 gi|336476467|ref|YP_004615608.1| - 0.081 12.6 0.3 0.12 12.0 0.2 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|336476467|ref|YP_004615608.1| - 0.091 11.6 0.2 0.19 10.5 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.9 gi|336476467|ref|YP_004615608.1| - 0.12 12.0 0.3 0.34 10.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) CcmB PF03379.8 gi|336476468|ref|YP_004615609.1| - 3.9e-30 104.6 16.7 4.8e-30 104.3 11.6 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|336476468|ref|YP_004615609.1| - 3.7e-12 45.8 15.4 3.7e-12 45.8 10.7 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336476468|ref|YP_004615609.1| - 6.7e-08 31.9 17.6 6.7e-08 31.9 12.2 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336476468|ref|YP_004615609.1| - 3.4e-06 26.4 26.6 8.2e-06 25.1 18.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|336476468|ref|YP_004615609.1| - 0.00016 20.6 18.2 0.00024 20.0 12.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Oleosin PF01277.12 gi|336476468|ref|YP_004615609.1| - 3.7 7.1 8.9 9.9 5.7 6.1 1.8 1 0 0 1 1 1 0 Oleosin Cytochrom_C_asm PF01578.15 gi|336476469|ref|YP_004615610.1| - 7.6e-29 100.7 17.7 7.6e-29 100.7 12.3 1.7 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF998 PF06197.8 gi|336476469|ref|YP_004615610.1| - 0.094 12.0 19.7 4.1 6.6 0.4 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF4405 PF14358.1 gi|336476469|ref|YP_004615610.1| - 0.5 10.5 0.1 0.5 10.5 0.1 4.8 4 1 2 6 6 6 0 Domain of unknown function (DUF4405) Topoisom_bac PF01131.15 gi|336476470|ref|YP_004615611.1| - 2.2e-104 349.4 0.0 2.9e-104 349.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|336476470|ref|YP_004615611.1| - 1e-14 54.3 0.0 2.3e-14 53.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|336476470|ref|YP_004615611.1| - 2.3e-13 49.3 21.1 1.6e-08 33.9 2.1 3.7 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.1 gi|336476470|ref|YP_004615611.1| - 0.015 15.3 0.0 0.044 13.8 0.0 1.8 1 0 0 1 1 1 0 Toprim domain Nitroreductase PF00881.19 gi|336476471|ref|YP_004615612.1| - 7.1e-35 120.2 0.0 8.6e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|336476471|ref|YP_004615612.1| - 0.00023 20.4 0.0 0.022 13.9 0.0 2.3 2 0 0 2 2 2 2 Putative TM nitroreductase IlvN PF07991.7 gi|336476472|ref|YP_004615613.1| - 5.8e-76 253.4 0.2 7.8e-76 253.0 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|336476472|ref|YP_004615613.1| - 6.5e-56 188.2 0.1 9.2e-56 187.8 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|336476472|ref|YP_004615613.1| - 8.6e-07 28.2 0.0 1.6e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|336476472|ref|YP_004615613.1| - 2.8e-06 27.2 0.0 4.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|336476472|ref|YP_004615613.1| - 1.8e-05 25.0 0.0 4e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|336476472|ref|YP_004615613.1| - 0.00011 22.1 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|336476472|ref|YP_004615613.1| - 0.023 14.1 0.1 0.04 13.3 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|336476472|ref|YP_004615613.1| - 0.078 13.2 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding YfaZ PF07437.6 gi|336476472|ref|YP_004615613.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 YfaZ precursor NAD_Gly3P_dh_N PF01210.18 gi|336476472|ref|YP_004615613.1| - 0.14 11.8 0.5 1.5 8.5 0.1 2.3 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALS_ss_C PF10369.4 gi|336476473|ref|YP_004615614.1| - 1.1e-32 111.5 5.2 1.3e-32 111.3 1.2 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|336476473|ref|YP_004615614.1| - 3.2e-19 68.5 2.0 7.5e-19 67.2 0.2 2.2 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|336476473|ref|YP_004615614.1| - 1.3e-15 56.4 5.6 4.2e-15 54.8 0.1 2.9 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|336476473|ref|YP_004615614.1| - 1.3e-05 25.3 0.9 1.3e-05 25.3 0.7 1.9 2 0 0 2 2 2 1 ACT domain NIL PF09383.5 gi|336476473|ref|YP_004615614.1| - 0.0046 16.5 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 2 NIL domain ACT_6 PF13740.1 gi|336476473|ref|YP_004615614.1| - 0.031 13.9 1.1 2.7 7.7 0.1 3.1 2 2 0 2 2 2 0 ACT domain Saccharop_dh_N PF04455.7 gi|336476473|ref|YP_004615614.1| - 0.08 13.0 0.2 0.18 11.9 0.0 1.7 1 1 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_N PF02776.13 gi|336476474|ref|YP_004615615.1| - 6.4e-61 204.8 0.0 3.1e-59 199.3 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336476474|ref|YP_004615615.1| - 2.3e-55 186.3 1.2 1.4e-54 183.8 0.0 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|336476474|ref|YP_004615615.1| - 3.6e-48 162.7 0.0 7.3e-48 161.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|336476474|ref|YP_004615615.1| - 0.0008 18.9 0.0 0.0015 18.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HMGL-like PF00682.14 gi|336476475|ref|YP_004615616.1| - 4.2e-69 232.8 0.0 7.6e-69 231.9 0.0 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|336476475|ref|YP_004615616.1| - 2.6e-36 124.3 2.8 4.5e-36 123.5 2.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Peptidase_M42 PF05343.9 gi|336476476|ref|YP_004615617.1| - 5.3e-112 373.3 2.8 6.3e-112 373.0 2.0 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|336476476|ref|YP_004615617.1| - 2e-15 56.8 0.2 3.1e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|336476476|ref|YP_004615617.1| - 0.027 14.2 0.0 0.17 11.6 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M28 MerR_2 PF13591.1 gi|336476477|ref|YP_004615618.1| - 0.1 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 MerR HTH family regulatory protein Adenylsucc_synt PF00709.16 gi|336476478|ref|YP_004615619.1| - 2e-156 520.9 0.0 2.2e-156 520.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Ribosomal_S19e PF01090.14 gi|336476479|ref|YP_004615620.1| - 3.3e-59 198.3 0.1 3.8e-59 198.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e dsDNA_bind PF01984.15 gi|336476480|ref|YP_004615621.1| - 1.7e-31 108.3 21.0 2.1e-31 108.0 14.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Tom22 PF04281.8 gi|336476480|ref|YP_004615621.1| - 0.073 12.6 3.4 0.1 12.1 2.3 1.3 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 SMC_N PF02463.14 gi|336476480|ref|YP_004615621.1| - 0.097 11.8 3.1 0.12 11.6 2.2 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Caps_synth_GfcC PF06251.6 gi|336476480|ref|YP_004615621.1| - 0.21 10.7 9.3 0.26 10.4 6.4 1.2 1 0 0 1 1 1 0 Capsule biosynthesis GfcC Kinase-PPPase PF03618.9 gi|336476480|ref|YP_004615621.1| - 0.21 11.0 5.5 0.19 11.1 1.8 1.9 1 1 1 2 2 2 0 Kinase/pyrophosphorylase Desmo_N PF06771.6 gi|336476480|ref|YP_004615621.1| - 0.42 10.5 2.5 0.89 9.5 1.3 1.9 1 1 1 2 2 2 0 Viral Desmoplakin N-terminus SDA1 PF05285.7 gi|336476480|ref|YP_004615621.1| - 1.6 7.9 14.1 1.7 7.8 9.8 1.1 1 0 0 1 1 1 0 SDA1 Borrelia_P83 PF05262.6 gi|336476480|ref|YP_004615621.1| - 6.4 4.9 13.9 6.7 4.8 9.6 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Asn_synthase PF00733.16 gi|336476481|ref|YP_004615622.1| - 0.00017 21.1 0.0 0.00046 19.7 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase ATP_bind_4 PF01902.12 gi|336476481|ref|YP_004615622.1| - 0.0019 17.6 0.0 0.0098 15.2 0.0 2.0 2 0 0 2 2 2 1 ATP-binding region QueC PF06508.8 gi|336476481|ref|YP_004615622.1| - 0.0068 15.7 0.0 0.0094 15.2 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF3969 PF13108.1 gi|336476481|ref|YP_004615622.1| - 0.015 14.9 0.1 0.028 14.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3969) tRNA_Me_trans PF03054.11 gi|336476481|ref|YP_004615622.1| - 0.038 12.5 0.0 0.057 11.9 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase AAA_17 PF13207.1 gi|336476481|ref|YP_004615622.1| - 0.042 14.6 0.0 0.06 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain PAPS_reduct PF01507.14 gi|336476481|ref|YP_004615622.1| - 0.085 12.6 0.0 0.21 11.4 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Ribosomal_L39 PF00832.15 gi|336476482|ref|YP_004615623.1| - 2e-20 71.9 8.6 2.4e-20 71.6 6.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|336476483|ref|YP_004615624.1| - 2.8e-26 90.9 0.6 3.2e-26 90.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|336476484|ref|YP_004615625.1| - 6.6e-64 214.6 1.1 7.7e-64 214.4 0.8 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|336476485|ref|YP_004615626.1| - 3.5e-10 39.8 0.2 3.8e-10 39.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Acyl_transf_2 PF02273.10 gi|336476485|ref|YP_004615626.1| - 0.0075 15.3 0.0 0.0076 15.2 0.0 1.1 1 0 0 1 1 1 1 Acyl transferase Prefoldin PF02996.12 gi|336476486|ref|YP_004615627.1| - 9.6e-30 102.7 3.2 1.2e-29 102.3 2.2 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|336476486|ref|YP_004615627.1| - 4.1e-09 36.1 9.7 9.2e-05 22.1 3.9 2.3 2 0 0 2 2 2 2 Prefoldin subunit LOH1CR12 PF10158.4 gi|336476486|ref|YP_004615627.1| - 5.3e-05 23.0 7.7 0.0088 15.8 0.3 2.5 2 1 1 3 3 3 2 Tumour suppressor protein DUF869 PF05911.6 gi|336476486|ref|YP_004615627.1| - 0.00097 17.4 6.4 0.0012 17.2 4.4 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) NPV_P10 PF05531.7 gi|336476486|ref|YP_004615627.1| - 0.0043 17.2 3.6 0.88 9.8 0.5 2.3 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein PspA_IM30 PF04012.7 gi|336476486|ref|YP_004615627.1| - 0.0061 15.9 6.0 0.0061 15.9 4.2 2.1 2 0 0 2 2 2 1 PspA/IM30 family IncA PF04156.9 gi|336476486|ref|YP_004615627.1| - 0.008 15.7 12.8 0.021 14.3 8.9 1.6 1 1 0 1 1 1 1 IncA protein Mod_r PF07200.8 gi|336476486|ref|YP_004615627.1| - 0.0082 16.0 2.1 0.0082 16.0 1.5 2.1 2 0 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein Uds1 PF15456.1 gi|336476486|ref|YP_004615627.1| - 0.0096 15.9 6.0 0.023 14.6 4.1 1.6 1 1 0 1 1 1 1 Up-regulated During Septation Seryl_tRNA_N PF02403.17 gi|336476486|ref|YP_004615627.1| - 0.016 15.1 6.4 0.53 10.3 1.2 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Tropomyosin_1 PF12718.2 gi|336476486|ref|YP_004615627.1| - 0.021 14.6 7.3 0.021 14.6 5.1 2.2 2 0 0 2 2 2 0 Tropomyosin like DUF2205 PF10224.4 gi|336476486|ref|YP_004615627.1| - 0.022 14.3 8.9 0.051 13.1 1.4 2.6 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) DUF1664 PF07889.7 gi|336476486|ref|YP_004615627.1| - 0.024 14.4 4.7 0.026 14.3 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) NEP PF10167.4 gi|336476486|ref|YP_004615627.1| - 0.024 14.3 3.6 0.33 10.6 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein DUF948 PF06103.6 gi|336476486|ref|YP_004615627.1| - 0.025 14.4 5.9 0.033 14.0 0.8 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.5 gi|336476486|ref|YP_004615627.1| - 0.025 14.6 8.3 0.17 12.0 2.4 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family HisK_N PF09385.5 gi|336476486|ref|YP_004615627.1| - 0.027 14.0 0.1 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase N terminal KLRAQ PF10205.4 gi|336476486|ref|YP_004615627.1| - 0.029 14.3 3.2 0.029 14.3 2.2 2.0 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein Spectrin PF00435.16 gi|336476486|ref|YP_004615627.1| - 0.031 14.5 12.3 1.2 9.4 0.3 2.2 2 0 0 2 2 2 0 Spectrin repeat EMP24_GP25L PF01105.19 gi|336476486|ref|YP_004615627.1| - 0.033 13.9 7.3 0.042 13.5 0.5 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF16 PF01519.11 gi|336476486|ref|YP_004615627.1| - 0.036 14.2 5.1 0.14 12.3 3.6 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF2968 PF11180.3 gi|336476486|ref|YP_004615627.1| - 0.04 13.3 1.4 0.04 13.3 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) AAA_32 PF13654.1 gi|336476486|ref|YP_004615627.1| - 0.052 12.1 5.3 0.054 12.1 0.5 2.0 2 0 0 2 2 2 0 AAA domain Syntaxin-6_N PF09177.6 gi|336476486|ref|YP_004615627.1| - 0.057 13.8 7.7 0.38 11.1 1.6 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF677 PF05055.7 gi|336476486|ref|YP_004615627.1| - 0.065 11.9 2.8 0.14 10.8 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF677) Dynamitin PF04912.9 gi|336476486|ref|YP_004615627.1| - 0.067 11.9 9.2 0.72 8.5 1.7 2.0 2 0 0 2 2 2 0 Dynamitin MscS_porin PF12795.2 gi|336476486|ref|YP_004615627.1| - 0.068 12.4 12.1 0.55 9.5 0.1 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Occludin_ELL PF07303.8 gi|336476486|ref|YP_004615627.1| - 0.073 13.8 6.5 0.99 10.1 2.2 2.2 2 0 0 2 2 2 0 Occludin homology domain RmuC PF02646.11 gi|336476486|ref|YP_004615627.1| - 0.076 11.8 6.8 0.38 9.5 1.2 2.1 2 0 0 2 2 2 0 RmuC family Bacillus_HBL PF05791.6 gi|336476486|ref|YP_004615627.1| - 0.08 12.3 7.8 2 7.7 0.1 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Herpes_U30 PF04523.8 gi|336476486|ref|YP_004615627.1| - 0.083 10.3 4.2 0.27 8.6 2.9 1.7 1 1 0 1 1 1 0 Herpes virus tegument protein U30 GAS PF13851.1 gi|336476486|ref|YP_004615627.1| - 0.096 11.8 8.2 0.11 11.7 1.5 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4140 PF13600.1 gi|336476486|ref|YP_004615627.1| - 0.098 13.1 5.3 1.5 9.2 0.9 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Fmp27_WPPW PF10359.4 gi|336476486|ref|YP_004615627.1| - 0.099 11.0 6.1 0.081 11.3 1.2 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain AAA_13 PF13166.1 gi|336476486|ref|YP_004615627.1| - 0.11 10.9 11.1 0.63 8.4 7.7 1.8 1 1 0 1 1 1 0 AAA domain Rad9 PF04139.8 gi|336476486|ref|YP_004615627.1| - 0.12 11.4 3.1 2.8 6.9 0.0 2.0 1 1 1 2 2 2 0 Rad9 DUF607 PF04678.8 gi|336476486|ref|YP_004615627.1| - 0.12 12.2 4.5 0.076 12.9 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Mnd1 PF03962.10 gi|336476486|ref|YP_004615627.1| - 0.13 11.9 9.9 2.4 7.7 3.5 2.1 2 0 0 2 2 2 0 Mnd1 family Baculo_PEP_C PF04513.7 gi|336476486|ref|YP_004615627.1| - 0.13 12.0 3.8 4.8 7.0 2.6 2.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus WXG100 PF06013.7 gi|336476486|ref|YP_004615627.1| - 0.14 12.1 8.2 0.76 9.8 0.7 2.5 2 0 0 2 2 2 0 Proteins of 100 residues with WXG AAA_27 PF13514.1 gi|336476486|ref|YP_004615627.1| - 0.14 9.7 6.0 0.19 9.3 0.7 1.7 1 1 0 1 1 1 0 AAA domain TBPIP PF07106.8 gi|336476486|ref|YP_004615627.1| - 0.15 11.6 12.2 0.14 11.6 3.8 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Matrilin_ccoil PF10393.4 gi|336476486|ref|YP_004615627.1| - 0.15 11.4 2.9 0.28 10.5 0.6 2.3 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Syntaxin PF00804.20 gi|336476486|ref|YP_004615627.1| - 0.15 12.1 7.4 0.39 10.9 0.7 2.2 2 0 0 2 2 2 0 Syntaxin DUF2935 PF11155.3 gi|336476486|ref|YP_004615627.1| - 0.17 11.9 2.4 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) Med4 PF10018.4 gi|336476486|ref|YP_004615627.1| - 0.19 11.1 10.1 1.2 8.5 0.2 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 HAUS-augmin3 PF14932.1 gi|336476486|ref|YP_004615627.1| - 0.19 10.8 9.2 0.019 14.1 2.1 1.9 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Laminin_II PF06009.7 gi|336476486|ref|YP_004615627.1| - 0.19 11.4 4.8 0.54 10.0 0.3 2.1 2 0 0 2 2 2 0 Laminin Domain II DUF479 PF04336.7 gi|336476486|ref|YP_004615627.1| - 0.2 11.7 1.4 2.7 8.1 0.9 2.5 1 1 1 2 2 2 0 Protein of unknown function, DUF479 CBF_beta PF02312.12 gi|336476486|ref|YP_004615627.1| - 0.22 11.1 4.6 0.31 10.6 3.2 1.5 1 1 0 1 1 1 0 Core binding factor beta subunit Reo_sigmaC PF04582.7 gi|336476486|ref|YP_004615627.1| - 0.26 10.4 1.7 2.3 7.3 0.1 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein NTR2 PF15458.1 gi|336476486|ref|YP_004615627.1| - 0.3 10.2 9.9 0.041 13.1 3.2 1.9 1 1 0 2 2 2 0 Nineteen complex-related protein 2 COG2 PF06148.6 gi|336476486|ref|YP_004615627.1| - 0.32 10.8 5.4 0.67 9.8 0.9 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.6 gi|336476486|ref|YP_004615627.1| - 0.32 9.6 8.2 0.34 9.5 2.5 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein BAR PF03114.13 gi|336476486|ref|YP_004615627.1| - 0.33 10.4 7.4 1.5 8.3 5.2 1.8 1 1 0 1 1 1 0 BAR domain DUF342 PF03961.8 gi|336476486|ref|YP_004615627.1| - 0.36 9.1 8.6 1.7 6.9 3.2 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF342) CDC37_N PF03234.9 gi|336476486|ref|YP_004615627.1| - 0.37 11.1 8.2 0.75 10.0 5.7 1.4 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4559 PF15112.1 gi|336476486|ref|YP_004615627.1| - 0.43 9.6 6.3 0.54 9.3 4.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) DUF4407 PF14362.1 gi|336476486|ref|YP_004615627.1| - 0.44 9.4 4.1 3.9 6.3 1.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) YlbD_coat PF14071.1 gi|336476486|ref|YP_004615627.1| - 0.49 10.4 6.5 0.52 10.3 0.9 2.2 2 0 0 2 2 2 0 Putative coat protein COG5 PF10392.4 gi|336476486|ref|YP_004615627.1| - 0.51 10.2 4.8 2 8.4 0.9 2.2 2 0 0 2 2 2 0 Golgi transport complex subunit 5 MCPsignal PF00015.16 gi|336476486|ref|YP_004615627.1| - 0.54 9.7 4.9 1.2 8.6 0.5 2.0 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1978 PF09321.5 gi|336476486|ref|YP_004615627.1| - 0.66 9.3 8.7 0.33 10.3 2.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1978) DUF4446 PF14584.1 gi|336476486|ref|YP_004615627.1| - 0.67 9.7 5.2 1.5 8.6 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF4200 PF13863.1 gi|336476486|ref|YP_004615627.1| - 0.69 9.8 13.3 0.5 10.3 4.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Allexi_40kDa PF05549.6 gi|336476486|ref|YP_004615627.1| - 0.73 9.0 5.3 1.7 7.8 0.9 2.0 1 1 0 2 2 2 0 Allexivirus 40kDa protein Peptidase_C65 PF10275.4 gi|336476486|ref|YP_004615627.1| - 0.78 9.0 9.2 0.37 10.1 3.0 2.0 1 1 1 2 2 2 0 Peptidase C65 Otubain HR1 PF02185.11 gi|336476486|ref|YP_004615627.1| - 0.88 9.3 15.4 0.58 9.9 5.0 2.6 3 0 0 3 3 2 0 Hr1 repeat ParB PF08775.5 gi|336476486|ref|YP_004615627.1| - 0.9 9.8 5.3 23 5.3 1.9 2.4 2 1 1 3 3 2 0 ParB family DUF3552 PF12072.3 gi|336476486|ref|YP_004615627.1| - 0.96 8.6 12.6 4.6 6.3 5.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Cortex-I_coil PF09304.5 gi|336476486|ref|YP_004615627.1| - 1 9.4 11.2 1.2 9.1 3.2 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil Nup54 PF13874.1 gi|336476486|ref|YP_004615627.1| - 1.1 8.9 8.7 0.55 9.9 1.5 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Snf7 PF03357.16 gi|336476486|ref|YP_004615627.1| - 1.1 8.5 14.6 0.76 9.1 0.9 2.5 2 1 0 2 2 2 0 Snf7 Atg14 PF10186.4 gi|336476486|ref|YP_004615627.1| - 1.2 8.0 6.5 2.2 7.1 0.9 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|336476486|ref|YP_004615627.1| - 1.2 9.4 7.7 2.6 8.4 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) FAD-SLDH PF12318.3 gi|336476486|ref|YP_004615627.1| - 1.2 8.7 5.7 8.6 6.0 1.0 2.1 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase DUF2408 PF10303.4 gi|336476486|ref|YP_004615627.1| - 1.2 9.2 10.0 8.4 6.5 2.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2408) TMF_DNA_bd PF12329.3 gi|336476486|ref|YP_004615627.1| - 1.3 8.9 15.7 0.13 12.0 4.4 2.8 3 1 1 4 4 3 0 TATA element modulatory factor 1 DNA binding Exonuc_X-T_C PF08411.5 gi|336476486|ref|YP_004615627.1| - 1.3 8.0 5.0 1.6 7.7 0.4 2.0 2 0 0 2 2 2 0 Exonuclease C-terminal V-SNARE PF05008.10 gi|336476486|ref|YP_004615627.1| - 1.4 9.1 10.3 11 6.2 1.4 3.2 3 1 0 3 3 2 0 Vesicle transport v-SNARE protein N-terminus FliJ PF02050.11 gi|336476486|ref|YP_004615627.1| - 1.7 8.6 16.2 0.72 9.9 5.6 2.4 2 1 0 2 2 2 0 Flagellar FliJ protein Flagellar_rod PF05149.7 gi|336476486|ref|YP_004615627.1| - 1.8 7.6 10.5 1.7 7.7 2.6 2.1 2 0 0 2 2 2 0 Paraflagellar rod protein CENP-F_leu_zip PF10473.4 gi|336476486|ref|YP_004615627.1| - 2.1 8.2 14.5 6.2 6.6 4.8 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4618 PF15397.1 gi|336476486|ref|YP_004615627.1| - 2.1 7.6 11.0 1.6 8.0 3.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Hormone_1 PF00103.15 gi|336476486|ref|YP_004615627.1| - 2.2 7.5 6.0 0.45 9.8 1.2 1.8 2 0 0 2 2 2 0 Somatotropin hormone family SlyX PF04102.7 gi|336476486|ref|YP_004615627.1| - 2.3 8.6 10.8 1.6 9.1 3.1 2.3 2 0 0 2 2 2 0 SlyX GrpE PF01025.14 gi|336476486|ref|YP_004615627.1| - 2.3 7.7 9.1 0.45 10.0 2.8 2.0 2 1 0 2 2 2 0 GrpE CENP-H PF05837.7 gi|336476486|ref|YP_004615627.1| - 2.4 8.4 8.3 2.8 8.1 0.1 2.1 2 0 0 2 2 2 0 Centromere protein H (CENP-H) HemX PF04375.9 gi|336476486|ref|YP_004615627.1| - 2.7 6.4 8.9 2.8 6.4 2.4 2.0 1 1 1 2 2 2 0 HemX ING PF12998.2 gi|336476486|ref|YP_004615627.1| - 2.7 8.2 9.1 0.59 10.4 1.4 2.1 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Tropomyosin PF00261.15 gi|336476486|ref|YP_004615627.1| - 2.7 6.9 11.3 0.87 8.6 3.6 2.1 2 0 0 2 2 2 0 Tropomyosin YlqD PF11068.3 gi|336476486|ref|YP_004615627.1| - 2.9 7.9 13.0 2.4 8.2 4.5 2.2 2 0 0 2 2 2 0 YlqD protein DUF1216 PF06746.6 gi|336476486|ref|YP_004615627.1| - 3.3 7.4 7.4 3.4 7.4 3.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1216) RNA_pol_Rpb4 PF03874.11 gi|336476486|ref|YP_004615627.1| - 3.7 7.5 7.7 1.3e+02 2.5 5.4 2.1 1 1 0 1 1 1 0 RNA polymerase Rpb4 DUF4337 PF14235.1 gi|336476486|ref|YP_004615627.1| - 4.1 7.2 7.1 2.1 8.1 2.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Ax_dynein_light PF10211.4 gi|336476486|ref|YP_004615627.1| - 4.3 7.1 12.9 1.2 8.9 4.1 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain FlaC_arch PF05377.6 gi|336476486|ref|YP_004615627.1| - 4.9 7.1 6.8 5.7 6.9 1.9 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Snapin_Pallidin PF14712.1 gi|336476486|ref|YP_004615627.1| - 5.1 7.4 13.3 4.5 7.6 0.3 2.4 2 0 0 2 2 2 0 Snapin/Pallidin DUF2203 PF09969.4 gi|336476486|ref|YP_004615627.1| - 5.1 7.3 6.6 1.5e+02 2.5 4.6 2.2 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) UPF0449 PF15136.1 gi|336476486|ref|YP_004615627.1| - 5.3 7.3 6.6 2.4 8.4 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 APG6 PF04111.7 gi|336476486|ref|YP_004615627.1| - 6.2 5.7 14.8 8.4 5.3 8.2 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 Spc24 PF08286.6 gi|336476486|ref|YP_004615627.1| - 8.1 6.1 12.3 3 7.5 3.0 2.4 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 V_ATPase_I PF01496.14 gi|336476486|ref|YP_004615627.1| - 8.5 4.0 7.8 8.2 4.1 4.6 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family YvrJ PF12841.2 gi|336476486|ref|YP_004615627.1| - 9.6 5.5 8.2 1.5 8.1 0.3 3.2 3 1 1 4 4 2 0 YvrJ protein family SRP54 PF00448.17 gi|336476487|ref|YP_004615628.1| - 8.8e-75 250.4 0.1 1.2e-74 250.0 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|336476487|ref|YP_004615628.1| - 7.5e-12 45.1 1.7 7.5e-12 45.1 1.2 2.8 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|336476487|ref|YP_004615628.1| - 1.4e-07 31.2 1.1 7.3e-07 28.9 0.1 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|336476487|ref|YP_004615628.1| - 0.0001 22.2 0.1 0.0001 22.2 0.1 1.6 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit CbiA PF01656.18 gi|336476487|ref|YP_004615628.1| - 0.00014 21.3 7.0 0.0011 18.4 2.7 2.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|336476487|ref|YP_004615628.1| - 0.00036 20.6 0.0 0.0014 18.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|336476487|ref|YP_004615628.1| - 0.00047 20.3 1.0 0.0021 18.2 0.2 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|336476487|ref|YP_004615628.1| - 0.00056 19.3 0.1 0.021 14.2 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.7 gi|336476487|ref|YP_004615628.1| - 0.00066 18.8 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|336476487|ref|YP_004615628.1| - 0.00085 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|336476487|ref|YP_004615628.1| - 0.00089 18.8 0.2 0.0015 18.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|336476487|ref|YP_004615628.1| - 0.0013 17.8 0.1 0.0024 16.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.15 gi|336476487|ref|YP_004615628.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase T2SE PF00437.15 gi|336476487|ref|YP_004615628.1| - 0.0031 16.4 0.1 0.017 14.0 0.0 1.9 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|336476487|ref|YP_004615628.1| - 0.0034 17.2 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain LpxK PF02606.9 gi|336476487|ref|YP_004615628.1| - 0.0034 16.3 0.0 0.0048 15.8 0.0 1.3 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase cobW PF02492.14 gi|336476487|ref|YP_004615628.1| - 0.0038 16.7 0.3 0.0038 16.7 0.2 1.5 2 0 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain 6PF2K PF01591.13 gi|336476487|ref|YP_004615628.1| - 0.0043 16.1 0.0 0.0066 15.5 0.0 1.3 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_28 PF13521.1 gi|336476487|ref|YP_004615628.1| - 0.0045 16.9 0.1 0.012 15.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336476487|ref|YP_004615628.1| - 0.007 16.3 0.1 0.043 13.7 0.0 2.2 2 1 0 2 2 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|336476487|ref|YP_004615628.1| - 0.019 15.8 0.5 0.059 14.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|336476487|ref|YP_004615628.1| - 0.025 13.2 0.0 0.045 12.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|336476487|ref|YP_004615628.1| - 0.029 14.0 0.2 0.072 12.7 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|336476487|ref|YP_004615628.1| - 0.05 13.0 0.8 0.16 11.4 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain NTPase_1 PF03266.10 gi|336476487|ref|YP_004615628.1| - 0.073 12.7 0.8 0.32 10.6 0.1 2.2 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|336476487|ref|YP_004615628.1| - 0.085 13.1 0.1 0.28 11.4 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Arf PF00025.16 gi|336476487|ref|YP_004615628.1| - 0.086 12.0 0.0 0.28 10.3 0.0 1.9 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_5 PF07728.9 gi|336476487|ref|YP_004615628.1| - 0.1 12.3 0.1 0.51 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|336476487|ref|YP_004615628.1| - 0.15 12.0 2.6 0.14 12.0 0.3 2.1 2 2 0 2 2 2 0 50S ribosome-binding GTPase Glyco_transf_4 PF13439.1 gi|336476487|ref|YP_004615628.1| - 0.16 11.6 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Trp_syntA PF00290.15 gi|336476488|ref|YP_004615629.1| - 4.1e-92 307.3 0.1 5e-92 307.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|336476488|ref|YP_004615629.1| - 3.8e-05 23.0 0.2 5.8e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|336476488|ref|YP_004615629.1| - 8.1e-05 21.9 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|336476488|ref|YP_004615629.1| - 0.00026 20.3 0.1 0.0045 16.2 0.2 2.1 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|336476488|ref|YP_004615629.1| - 0.0029 16.4 0.3 0.0046 15.8 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase BtpA PF03437.10 gi|336476488|ref|YP_004615629.1| - 0.015 14.5 0.5 0.1 11.8 0.4 1.9 1 1 1 2 2 2 0 BtpA family ThiG PF05690.9 gi|336476488|ref|YP_004615629.1| - 0.074 12.1 0.2 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|336476489|ref|YP_004615630.1| - 3.1e-36 125.1 0.5 4.1e-36 124.7 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phage_min_cap2 PF06152.6 gi|336476489|ref|YP_004615630.1| - 0.063 12.2 0.1 0.091 11.7 0.1 1.2 1 0 0 1 1 1 0 Phage minor capsid protein 2 PspC PF04024.7 gi|336476490|ref|YP_004615631.1| - 2e-28 97.6 1.0 2.1e-28 97.5 0.7 1.0 1 0 0 1 1 1 1 PspC domain IGPS PF00218.16 gi|336476491|ref|YP_004615632.1| - 3.6e-66 222.8 0.2 4e-66 222.6 0.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|336476491|ref|YP_004615632.1| - 1.6e-05 24.5 0.2 2.9e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|336476491|ref|YP_004615632.1| - 0.0006 18.8 0.5 0.082 11.8 0.0 2.9 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|336476491|ref|YP_004615632.1| - 0.0076 15.5 0.1 0.012 14.8 0.1 1.4 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|336476491|ref|YP_004615632.1| - 0.0077 15.5 0.1 0.014 14.6 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|336476491|ref|YP_004615632.1| - 0.048 12.7 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|336476491|ref|YP_004615632.1| - 0.052 12.3 0.0 0.095 11.5 0.0 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Ribosomal_L12 PF00542.14 gi|336476491|ref|YP_004615632.1| - 0.075 13.0 0.8 3.9 7.5 0.0 2.5 1 1 1 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain Ribul_P_3_epim PF00834.14 gi|336476491|ref|YP_004615632.1| - 0.1 11.7 0.1 5.6 6.0 0.0 2.3 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Arch_flagellin PF01917.11 gi|336476493|ref|YP_004615634.1| - 4.5e-34 117.7 0.3 2.7e-22 79.3 1.1 2.3 2 0 0 2 2 2 2 Archaebacterial flagellin TRAP_beta PF05753.9 gi|336476494|ref|YP_004615635.1| - 0.00015 20.9 0.2 0.00096 18.3 0.1 2.1 1 1 1 2 2 2 1 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|336476494|ref|YP_004615635.1| - 0.00036 20.5 0.0 0.00063 19.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF11 BatD PF13584.1 gi|336476494|ref|YP_004615635.1| - 0.00063 18.4 0.0 0.67 8.4 0.0 2.4 2 0 0 2 2 2 2 Oxygen tolerance CARDB PF07705.6 gi|336476494|ref|YP_004615635.1| - 0.025 14.6 0.6 0.18 11.8 0.0 2.5 3 0 0 3 3 3 0 CARDB Arch_fla_DE PF04659.8 gi|336476495|ref|YP_004615636.1| - 2.9e-28 97.5 0.4 2.9e-28 97.5 0.3 2.5 2 0 0 2 2 2 1 Archaeal flagella protein Baculo_PEP_C PF04513.7 gi|336476495|ref|YP_004615636.1| - 0.027 14.2 17.6 9.7 6.0 0.2 3.8 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3375 PF11855.3 gi|336476495|ref|YP_004615636.1| - 0.03 13.0 6.2 0.055 12.1 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) DUF1664 PF07889.7 gi|336476495|ref|YP_004615636.1| - 0.53 10.0 11.8 5.7 6.7 0.5 4.2 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.4 gi|336476495|ref|YP_004615636.1| - 1.2 9.0 27.9 0.058 13.2 6.7 4.2 2 1 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.3 gi|336476495|ref|YP_004615636.1| - 7.1 5.8 12.2 3.9 6.6 0.5 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) TRAP_beta PF05753.9 gi|336476496|ref|YP_004615637.1| - 5.6e-10 38.6 1.0 2.2e-06 26.9 0.1 2.9 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|336476496|ref|YP_004615637.1| - 3.2e-07 30.3 0.4 1.4 8.9 0.0 3.9 3 0 0 3 3 3 3 CARDB DUF11 PF01345.13 gi|336476496|ref|YP_004615637.1| - 1.7e-05 24.7 0.2 0.04 13.9 0.0 3.5 4 0 0 4 4 4 2 Domain of unknown function DUF11 BatD PF13584.1 gi|336476496|ref|YP_004615637.1| - 7.6e-05 21.4 0.7 0.0014 17.3 0.0 2.3 1 1 1 2 2 2 1 Oxygen tolerance DUF2838 PF10998.3 gi|336476497|ref|YP_004615638.1| - 0.07 13.0 4.8 0.093 12.6 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2838) CitMHS PF03600.11 gi|336476497|ref|YP_004615638.1| - 1.7 7.1 13.1 4.3 5.8 9.3 1.5 1 1 1 2 2 2 0 Citrate transporter MHYT PF03707.11 gi|336476497|ref|YP_004615638.1| - 3.6 7.7 7.2 4.5 7.4 3.4 2.0 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat Arch_fla_DE PF04659.8 gi|336476498|ref|YP_004615639.1| - 4.1e-29 100.3 0.1 4.1e-29 100.3 0.1 2.5 3 0 0 3 3 3 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|336476498|ref|YP_004615639.1| - 6.1e-16 58.0 6.1 6.1e-16 58.0 4.2 4.2 3 1 0 4 4 4 2 Flagella accessory protein C (FlaC) NPV_P10 PF05531.7 gi|336476498|ref|YP_004615639.1| - 0.00017 21.7 2.8 0.00017 21.7 1.9 3.1 3 0 0 3 3 2 1 Nucleopolyhedrovirus P10 protein DUF869 PF05911.6 gi|336476498|ref|YP_004615639.1| - 0.00071 17.9 14.4 0.001 17.4 10.0 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Vps5 PF09325.5 gi|336476498|ref|YP_004615639.1| - 0.00082 18.6 6.5 0.16 11.1 0.7 2.3 2 0 0 2 2 2 2 Vps5 C terminal like AAA_27 PF13514.1 gi|336476498|ref|YP_004615639.1| - 0.0028 15.4 5.9 0.0038 15.0 4.1 1.1 1 0 0 1 1 1 1 AAA domain BLOC1_2 PF10046.4 gi|336476498|ref|YP_004615639.1| - 0.0049 16.9 18.7 0.016 15.3 2.2 3.0 2 1 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|336476498|ref|YP_004615639.1| - 0.0061 16.3 13.2 0.28 10.9 0.3 3.6 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.4 gi|336476498|ref|YP_004615639.1| - 0.0062 16.3 23.2 0.045 13.6 7.3 2.5 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Reo_sigmaC PF04582.7 gi|336476498|ref|YP_004615639.1| - 0.0084 15.3 10.7 0.013 14.7 3.2 2.2 1 1 0 2 2 2 1 Reovirus sigma C capsid protein MitMem_reg PF13012.1 gi|336476498|ref|YP_004615639.1| - 0.0085 16.1 8.8 0.014 15.4 0.8 2.6 1 1 1 2 2 2 1 Maintenance of mitochondrial structure and function Laminin_II PF06009.7 gi|336476498|ref|YP_004615639.1| - 0.011 15.5 5.6 0.011 15.5 3.9 3.0 1 1 2 3 3 3 0 Laminin Domain II GAS PF13851.1 gi|336476498|ref|YP_004615639.1| - 0.016 14.4 15.7 0.08 12.1 3.3 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding EMP24_GP25L PF01105.19 gi|336476498|ref|YP_004615639.1| - 0.048 13.3 9.0 0.84 9.3 0.1 2.8 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF607 PF04678.8 gi|336476498|ref|YP_004615639.1| - 0.052 13.4 6.3 0.78 9.6 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Fib_alpha PF08702.5 gi|336476498|ref|YP_004615639.1| - 0.066 13.3 16.7 0.21 11.6 4.0 2.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|336476498|ref|YP_004615639.1| - 0.075 12.6 17.9 0.22 11.1 2.8 2.3 1 1 1 2 2 2 0 IncA protein MbeD_MobD PF04899.7 gi|336476498|ref|YP_004615639.1| - 0.09 12.6 2.7 8.7 6.3 0.0 2.6 2 0 0 2 2 2 0 MbeD/MobD like Nup54 PF13874.1 gi|336476498|ref|YP_004615639.1| - 0.12 12.0 9.7 1.8 8.2 2.4 3.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 MAD PF05557.8 gi|336476498|ref|YP_004615639.1| - 0.17 9.9 19.2 0.48 8.4 13.3 1.7 1 1 0 1 1 1 0 Mitotic checkpoint protein WXG100 PF06013.7 gi|336476498|ref|YP_004615639.1| - 0.27 11.2 6.9 0.23 11.4 1.4 2.8 3 0 0 3 3 2 0 Proteins of 100 residues with WXG V_ATPase_I PF01496.14 gi|336476498|ref|YP_004615639.1| - 0.27 9.0 17.4 1.1 7.0 11.7 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4473 PF14747.1 gi|336476498|ref|YP_004615639.1| - 0.39 10.9 4.4 0.56 10.4 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) AAA_13 PF13166.1 gi|336476498|ref|YP_004615639.1| - 0.46 8.8 21.0 0.18 10.2 6.9 1.9 1 1 1 2 2 2 0 AAA domain MscS_porin PF12795.2 gi|336476498|ref|YP_004615639.1| - 0.47 9.7 11.6 0.074 12.3 3.9 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF489 PF04356.7 gi|336476498|ref|YP_004615639.1| - 0.5 9.9 8.4 0.83 9.2 1.7 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF489) ORF6C PF10552.4 gi|336476498|ref|YP_004615639.1| - 0.66 9.7 11.0 0.3 10.8 1.7 2.9 2 1 1 3 3 3 0 ORF6C domain DUF4094 PF13334.1 gi|336476498|ref|YP_004615639.1| - 0.68 10.3 6.6 2.1 8.8 0.0 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF4094) MCPsignal PF00015.16 gi|336476498|ref|YP_004615639.1| - 0.69 9.4 10.5 2.2 7.7 2.9 2.3 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Ax_dynein_light PF10211.4 gi|336476498|ref|YP_004615639.1| - 0.73 9.6 11.3 0.96 9.2 0.3 2.7 2 1 1 3 3 3 0 Axonemal dynein light chain Adeno_PIX PF03955.9 gi|336476498|ref|YP_004615639.1| - 0.81 10.2 4.7 5.6 7.5 0.6 3.0 2 1 1 3 3 3 0 Adenovirus hexon-associated protein (IX) Enkurin PF13864.1 gi|336476498|ref|YP_004615639.1| - 1 9.5 8.0 1.5 9.0 0.7 3.1 2 1 0 2 2 2 0 Calmodulin-binding DUF342 PF03961.8 gi|336476498|ref|YP_004615639.1| - 1.2 7.5 15.9 0.14 10.5 3.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF342) Tropomyosin_1 PF12718.2 gi|336476498|ref|YP_004615639.1| - 1.5 8.6 22.4 1.2 9.0 6.6 2.9 2 1 1 3 3 3 0 Tropomyosin like DUF4298 PF14131.1 gi|336476498|ref|YP_004615639.1| - 2 8.3 7.6 2.1 8.2 0.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4298) Streptin-Immun PF11083.3 gi|336476498|ref|YP_004615639.1| - 2 8.4 16.8 0.12 12.3 3.5 3.0 2 1 1 3 3 2 0 Lantibiotic streptin immunity protein Pox_A_type_inc PF04508.7 gi|336476498|ref|YP_004615639.1| - 4 7.4 9.5 1.6 8.7 0.2 4.1 4 0 0 4 4 3 0 Viral A-type inclusion protein repeat TBPIP PF07106.8 gi|336476498|ref|YP_004615639.1| - 4.3 6.8 19.4 3.2 7.2 4.4 2.7 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ADIP PF11559.3 gi|336476498|ref|YP_004615639.1| - 4.6 7.1 15.0 2.1 8.2 4.0 2.4 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Allexi_40kDa PF05549.6 gi|336476498|ref|YP_004615639.1| - 4.9 6.3 12.7 1.1 8.5 3.5 2.5 1 1 0 2 2 2 0 Allexivirus 40kDa protein AATF-Che1 PF13339.1 gi|336476498|ref|YP_004615639.1| - 5 7.2 10.4 4.9 7.3 0.7 3.1 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Syntaxin_2 PF14523.1 gi|336476498|ref|YP_004615639.1| - 6.3 6.8 12.8 0.53 10.3 2.9 2.7 1 1 1 2 2 2 0 Syntaxin-like protein Sec34 PF04136.10 gi|336476498|ref|YP_004615639.1| - 8.8 6.0 16.1 3.6 7.2 4.0 2.5 1 1 0 2 2 2 0 Sec34-like family Kinetocho_Slk19 PF12709.2 gi|336476498|ref|YP_004615639.1| - 9.1 6.4 11.8 30 4.7 0.4 3.6 2 1 1 3 3 3 0 Central kinetochore-associated ACCA PF03255.9 gi|336476498|ref|YP_004615639.1| - 9.6 5.7 11.6 0.58 9.7 0.9 2.9 3 0 0 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Lactamase_B_3 PF13483.1 gi|336476499|ref|YP_004615640.1| - 0.032 13.9 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Arch_flagellin PF01917.11 gi|336476502|ref|YP_004615643.1| - 3.1e-44 150.8 5.9 3.6e-44 150.6 4.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1049 PF06305.6 gi|336476502|ref|YP_004615643.1| - 0.073 12.5 0.6 0.13 11.7 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) CRF1 PF10380.4 gi|336476502|ref|YP_004615643.1| - 0.37 11.1 2.9 0.17 12.2 0.6 1.5 2 0 0 2 2 2 0 Transcription factor CRF1 DUF4235 PF14019.1 gi|336476502|ref|YP_004615643.1| - 0.49 10.2 3.0 0.76 9.6 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4235) Arch_flagellin PF01917.11 gi|336476503|ref|YP_004615644.1| - 1.3e-45 155.3 8.0 1.6e-45 155.1 5.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|336476504|ref|YP_004615645.1| - 2.8e-43 147.7 7.8 3.5e-43 147.4 5.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1049 PF06305.6 gi|336476504|ref|YP_004615645.1| - 0.047 13.1 0.8 0.082 12.3 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) Arch_flagellin PF01917.11 gi|336476505|ref|YP_004615646.1| - 4.4e-32 111.2 6.1 5.5e-32 110.9 4.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin ABC2_membrane_4 PF12730.2 gi|336476506|ref|YP_004615647.1| - 0.0051 15.9 0.0 0.0078 15.3 0.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Cbl_N2 PF02761.9 gi|336476506|ref|YP_004615647.1| - 0.016 15.2 0.0 0.045 13.8 0.0 1.7 2 0 0 2 2 2 0 CBL proto-oncogene N-terminus, EF hand-like domain EF-hand_1 PF00036.27 gi|336476506|ref|YP_004615647.1| - 0.024 13.8 0.4 0.079 12.3 0.1 2.1 2 0 0 2 2 2 0 EF hand EF-hand_5 PF13202.1 gi|336476506|ref|YP_004615647.1| - 0.034 13.5 0.2 0.08 12.3 0.1 1.6 1 0 0 1 1 1 0 EF hand EF-hand_7 PF13499.1 gi|336476506|ref|YP_004615647.1| - 0.064 13.3 0.5 0.15 12.2 0.1 1.8 2 0 0 2 2 2 0 EF-hand domain pair Acetyltransf_10 PF13673.1 gi|336476508|ref|YP_004615649.1| - 0.0069 16.4 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336476508|ref|YP_004615649.1| - 0.015 15.3 0.0 0.05 13.6 0.0 1.9 2 1 0 2 2 2 0 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336476508|ref|YP_004615649.1| - 0.029 14.5 0.0 0.065 13.3 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336476508|ref|YP_004615649.1| - 0.062 13.0 0.1 0.35 10.6 0.0 2.1 1 1 0 1 1 1 0 FR47-like protein PB1-F2 PF11986.3 gi|336476508|ref|YP_004615649.1| - 0.12 12.4 0.0 0.33 11.0 0.0 1.8 1 0 0 1 1 1 0 Influenza A Proapoptotic protein Na_H_Exchanger PF00999.16 gi|336476509|ref|YP_004615650.1| - 0.0015 17.1 1.0 0.0016 17.0 0.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PsaL PF02605.10 gi|336476509|ref|YP_004615650.1| - 0.11 11.9 0.1 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Photosystem I reaction centre subunit XI CheF-arch PF04283.7 gi|336476510|ref|YP_004615651.1| - 0.00047 19.4 0.0 0.00067 18.9 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.15 gi|336476510|ref|YP_004615651.1| - 0.035 13.6 0.0 0.086 12.3 0.0 1.6 2 0 0 2 2 2 0 GRAM domain V4R PF02830.13 gi|336476511|ref|YP_004615652.1| - 0.00038 20.2 0.6 0.00078 19.2 0.4 1.5 1 0 0 1 1 1 1 V4R domain LSM PF01423.17 gi|336476512|ref|YP_004615653.1| - 0.011 15.2 0.3 0.018 14.5 0.2 1.5 1 1 0 1 1 1 0 LSM domain KaiC PF06745.8 gi|336476513|ref|YP_004615654.1| - 2.8e-46 157.4 0.0 4.6e-46 156.7 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336476513|ref|YP_004615654.1| - 9.8e-12 44.6 0.0 1.9e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|336476513|ref|YP_004615654.1| - 0.00022 19.6 0.0 0.047 12.0 0.0 2.3 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_10 PF12846.2 gi|336476513|ref|YP_004615654.1| - 0.00042 19.8 0.1 0.014 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain Sigma54_activat PF00158.21 gi|336476513|ref|YP_004615654.1| - 0.0012 18.3 0.1 0.16 11.4 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_14 PF13173.1 gi|336476513|ref|YP_004615654.1| - 0.0025 17.7 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336476513|ref|YP_004615654.1| - 0.011 15.2 0.2 0.023 14.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|336476513|ref|YP_004615654.1| - 0.016 15.0 0.1 0.057 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|336476513|ref|YP_004615654.1| - 0.022 14.1 0.0 0.053 12.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|336476513|ref|YP_004615654.1| - 0.027 14.5 0.2 0.071 13.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|336476513|ref|YP_004615654.1| - 0.035 13.5 0.0 0.069 12.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family RecA PF00154.16 gi|336476513|ref|YP_004615654.1| - 0.038 13.0 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|336476513|ref|YP_004615654.1| - 0.042 13.5 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|336476513|ref|YP_004615654.1| - 0.043 12.7 0.0 0.067 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|336476513|ref|YP_004615654.1| - 0.071 13.9 0.9 0.21 12.4 0.1 2.2 2 2 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|336476513|ref|YP_004615654.1| - 0.081 13.2 0.0 0.34 11.1 0.0 2.0 2 0 0 2 2 2 0 ABC transporter MobB PF03205.9 gi|336476513|ref|YP_004615654.1| - 0.082 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|336476513|ref|YP_004615654.1| - 0.16 11.1 0.3 0.29 10.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1_C PF08438.5 gi|336476514|ref|YP_004615655.1| - 0.019 15.2 0.4 0.17 12.1 0.1 2.2 1 1 1 2 2 2 0 GTPase of unknown function C-terminal DUF382 PF04037.8 gi|336476514|ref|YP_004615655.1| - 0.062 13.1 0.1 0.23 11.3 0.0 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF382) Penicillinase_R PF03965.11 gi|336476515|ref|YP_004615656.1| - 0.00011 22.2 2.4 0.00019 21.5 0.1 2.5 2 0 0 2 2 2 1 Penicillinase repressor Apolipoprotein PF01442.13 gi|336476515|ref|YP_004615656.1| - 0.0036 16.8 13.1 0.012 15.1 3.7 3.2 2 1 0 2 2 2 1 Apolipoprotein A1/A4/E domain z-alpha PF02295.12 gi|336476515|ref|YP_004615656.1| - 0.0063 16.2 0.5 0.016 14.9 0.3 1.7 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain YgaB PF14182.1 gi|336476515|ref|YP_004615656.1| - 0.026 14.7 1.1 0.026 14.7 0.7 5.3 3 2 3 6 6 5 0 YgaB-like protein HalX PF08663.5 gi|336476515|ref|YP_004615656.1| - 0.04 13.9 18.4 0.34 10.9 0.1 6.0 4 1 1 6 6 6 0 HalX domain Arg_repressor PF01316.16 gi|336476515|ref|YP_004615656.1| - 0.04 13.4 0.8 0.15 11.6 0.6 2.1 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain DUF977 PF06163.6 gi|336476515|ref|YP_004615656.1| - 0.04 13.6 0.1 0.21 11.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) Rootletin PF15035.1 gi|336476515|ref|YP_004615656.1| - 0.045 13.7 0.2 0.045 13.7 0.2 3.7 3 1 1 4 4 4 0 Ciliary rootlet component, centrosome cohesion Pox_A_type_inc PF04508.7 gi|336476515|ref|YP_004615656.1| - 0.14 11.9 0.2 0.14 11.9 0.1 5.0 6 0 0 6 6 5 0 Viral A-type inclusion protein repeat Baculo_PEP_C PF04513.7 gi|336476515|ref|YP_004615656.1| - 0.16 11.7 18.5 0.7 9.7 3.8 5.0 3 1 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.3 gi|336476515|ref|YP_004615656.1| - 0.28 11.0 30.9 0.13 12.0 0.4 6.0 4 2 1 6 6 6 0 TATA element modulatory factor 1 DNA binding NPV_P10 PF05531.7 gi|336476515|ref|YP_004615656.1| - 0.51 10.6 23.2 2.7 8.3 0.1 6.0 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|336476515|ref|YP_004615656.1| - 0.64 8.6 38.7 0.013 14.1 2.5 3.8 3 1 1 4 4 4 0 Spc7 kinetochore protein DUF2935 PF11155.3 gi|336476515|ref|YP_004615656.1| - 1.7 8.7 15.3 0.18 11.8 0.6 4.1 2 1 1 3 3 3 0 Domain of unknown function (DUF2935) DUF4140 PF13600.1 gi|336476515|ref|YP_004615656.1| - 2.7 8.4 14.5 6.8 7.1 0.7 5.2 2 2 2 5 5 5 0 N-terminal domain of unknown function (DUF4140) Latarcin PF10279.4 gi|336476515|ref|YP_004615656.1| - 3.9 7.7 20.3 11 6.3 0.6 4.7 1 1 1 2 2 2 0 Latarcin precursor DUF948 PF06103.6 gi|336476515|ref|YP_004615656.1| - 4.8 7.1 14.0 9.2 6.2 0.2 4.6 5 1 0 5 5 5 0 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|336476515|ref|YP_004615656.1| - 5.4 6.0 12.1 2.7 7.0 1.3 3.1 2 1 1 3 3 3 0 Reovirus sigma C capsid protein V_ATPase_I PF01496.14 gi|336476515|ref|YP_004615656.1| - 7.1 4.3 26.4 0.57 7.9 1.3 3.1 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|336476515|ref|YP_004615656.1| - 7.2 5.4 17.5 0.026 13.4 1.3 3.0 2 1 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Kinase-PPPase PF03618.9 gi|336476516|ref|YP_004615657.1| - 0.00091 18.7 0.2 0.002 17.6 0.0 1.6 1 1 1 2 2 2 1 Kinase/pyrophosphorylase KIX PF02172.11 gi|336476516|ref|YP_004615657.1| - 0.029 14.4 0.1 0.078 13.0 0.1 1.8 1 0 0 1 1 1 0 KIX domain CwfJ_C_2 PF04676.9 gi|336476516|ref|YP_004615657.1| - 0.083 13.3 0.1 0.17 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 2 FAM86 PF14904.1 gi|336476516|ref|YP_004615657.1| - 0.089 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function Glyco_hydro_72 PF03198.9 gi|336476516|ref|YP_004615657.1| - 0.092 11.7 0.4 0.12 11.3 0.3 1.2 1 0 0 1 1 1 0 Glucanosyltransferase HisKA_2 PF07568.7 gi|336476517|ref|YP_004615658.1| - 5.3e-25 87.0 2.1 1.9e-24 85.3 1.4 2.0 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|336476517|ref|YP_004615658.1| - 1.3e-13 50.8 0.3 2.6e-13 49.8 0.2 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|336476517|ref|YP_004615658.1| - 1e-10 41.3 0.1 2.3e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336476517|ref|YP_004615658.1| - 1.1e-08 35.3 0.5 5.6e-06 26.6 0.0 3.1 2 1 0 2 2 2 1 PAS domain HWE_HK PF07536.9 gi|336476517|ref|YP_004615658.1| - 7.8e-06 26.2 0.2 1.6e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.1 gi|336476517|ref|YP_004615658.1| - 8.3e-06 25.7 0.1 0.00011 22.0 0.0 2.6 2 1 0 2 2 2 1 PAS domain PAS_8 PF13188.1 gi|336476517|ref|YP_004615658.1| - 8.3e-05 22.3 0.0 0.00061 19.5 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|336476517|ref|YP_004615658.1| - 0.00012 21.9 0.0 0.00024 20.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|336476517|ref|YP_004615658.1| - 0.00014 21.5 0.1 0.0013 18.5 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|336476517|ref|YP_004615658.1| - 0.0021 17.7 0.2 0.0059 16.2 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|336476517|ref|YP_004615658.1| - 0.061 13.3 0.1 1.4 8.9 0.0 2.5 3 0 0 3 3 3 0 PAS fold MCPsignal PF00015.16 gi|336476518|ref|YP_004615659.1| - 3e-67 226.2 60.8 5.4e-62 209.1 25.6 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336476518|ref|YP_004615659.1| - 6e-14 51.9 17.6 7.1e-13 48.5 0.0 5.1 5 2 1 6 6 5 2 HAMP domain Cache_1 PF02743.13 gi|336476518|ref|YP_004615659.1| - 1.9e-12 46.5 0.4 6.6e-12 44.8 0.2 2.0 2 0 0 2 2 1 1 Cache domain DUF948 PF06103.6 gi|336476518|ref|YP_004615659.1| - 0.0017 18.1 41.2 0.016 15.0 2.9 6.2 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|336476518|ref|YP_004615659.1| - 0.0085 15.8 41.9 0.013 15.2 7.0 4.7 2 2 2 4 4 4 2 Laminin Domain II NPV_P10 PF05531.7 gi|336476518|ref|YP_004615659.1| - 0.0087 16.2 3.1 0.0087 16.2 2.2 5.9 3 2 3 6 6 5 2 Nucleopolyhedrovirus P10 protein DUF869 PF05911.6 gi|336476518|ref|YP_004615659.1| - 0.016 13.4 36.5 0.024 12.8 25.3 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF2365 PF10157.4 gi|336476518|ref|YP_004615659.1| - 0.027 14.3 21.3 0.31 10.9 1.7 4.4 1 1 2 4 4 4 0 Uncharacterized conserved protein (DUF2365) Reo_sigmaC PF04582.7 gi|336476518|ref|YP_004615659.1| - 0.26 10.4 37.4 0.73 8.9 9.0 3.4 1 1 1 3 3 3 0 Reovirus sigma C capsid protein PhageMin_Tail PF10145.4 gi|336476518|ref|YP_004615659.1| - 1.3 8.6 41.0 12 5.4 12.7 2.9 1 1 1 2 2 2 0 Phage-related minor tail protein Spc7 PF08317.6 gi|336476518|ref|YP_004615659.1| - 1.8 7.1 39.9 0.28 9.7 8.4 3.3 3 1 1 4 4 4 0 Spc7 kinetochore protein Hormone_1 PF00103.15 gi|336476518|ref|YP_004615659.1| - 2.5 7.4 18.1 0.03 13.6 1.2 3.9 2 2 1 3 3 3 0 Somatotropin hormone family Flu_NS2 PF00601.14 gi|336476518|ref|YP_004615659.1| - 3 8.1 8.5 2.2 8.5 0.2 4.1 2 2 2 4 4 4 0 Influenza non-structural protein (NS2) DUF3407 PF11887.3 gi|336476518|ref|YP_004615659.1| - 3.4 6.8 11.8 0.42 9.8 2.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) AIP3 PF03915.8 gi|336476518|ref|YP_004615659.1| - 3.4 6.4 37.5 2.9 6.6 11.3 2.4 1 1 0 2 2 2 0 Actin interacting protein 3 Syntaxin PF00804.20 gi|336476518|ref|YP_004615659.1| - 4.8 7.4 44.9 0.41 10.8 3.7 6.1 2 1 2 4 4 3 0 Syntaxin DUF1664 PF07889.7 gi|336476518|ref|YP_004615659.1| - 5.2 6.8 33.4 0.5 10.1 4.1 4.8 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) IFT57 PF10498.4 gi|336476518|ref|YP_004615659.1| - 5.8 5.5 30.3 0.31 9.7 6.4 2.6 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Seryl_tRNA_N PF02403.17 gi|336476518|ref|YP_004615659.1| - 8.3 6.4 38.0 2.7 8.0 2.6 4.8 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|336476518|ref|YP_004615659.1| - 10 5.0 32.1 0.99 8.3 7.1 2.7 1 1 2 3 3 3 0 Autophagy protein Apg6 CheW PF01584.14 gi|336476519|ref|YP_004615660.1| - 1.9e-41 140.7 2.5 2.2e-41 140.5 1.8 1.1 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.19 gi|336476520|ref|YP_004615661.1| - 2.8e-28 98.1 2.0 3.2e-28 97.9 1.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|336476520|ref|YP_004615661.1| - 0.03 14.1 0.1 0.041 13.7 0.1 1.2 1 0 0 1 1 1 0 B12 binding domain CheB_methylest PF01339.12 gi|336476521|ref|YP_004615662.1| - 5.2e-64 215.0 0.1 8.5e-64 214.3 0.1 1.3 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|336476521|ref|YP_004615662.1| - 3.6e-23 81.7 0.5 1.4e-22 79.7 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain ATP-synt_ab PF00006.20 gi|336476521|ref|YP_004615662.1| - 0.041 13.3 0.0 0.092 12.2 0.0 1.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain CheW PF01584.14 gi|336476522|ref|YP_004615663.1| - 7.2e-24 83.8 3.2 1.6e-23 82.6 2.2 1.6 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.18 gi|336476522|ref|YP_004615663.1| - 8.9e-24 83.3 0.9 8.9e-24 83.3 0.6 2.1 2 0 0 2 2 2 1 Hpt domain P2 PF07194.6 gi|336476522|ref|YP_004615663.1| - 3.4e-23 81.2 2.4 1.6e-22 79.1 1.6 2.2 1 0 0 1 1 1 1 P2 response regulator binding domain H-kinase_dim PF02895.9 gi|336476522|ref|YP_004615663.1| - 9e-21 73.9 7.7 9.4e-21 73.9 3.6 2.4 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c PF02518.21 gi|336476522|ref|YP_004615663.1| - 2.7e-19 68.8 4.0 2.8e-19 68.8 1.1 2.4 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|336476522|ref|YP_004615663.1| - 0.00017 21.2 0.2 0.00068 19.3 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336476522|ref|YP_004615663.1| - 0.0056 16.4 0.2 0.029 14.1 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Snf7 PF03357.16 gi|336476522|ref|YP_004615663.1| - 0.059 12.7 6.0 0.019 14.3 0.9 2.4 2 0 0 2 2 2 0 Snf7 GTPase_Cys_C PF12631.2 gi|336476522|ref|YP_004615663.1| - 0.1 13.0 2.6 14 6.1 0.1 3.2 3 0 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE CheC PF04509.7 gi|336476523|ref|YP_004615664.1| - 4.2e-09 35.9 0.0 9.1e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 CheC-like family CheR PF01739.13 gi|336476524|ref|YP_004615665.1| - 2.7e-56 189.9 0.1 3.7e-56 189.5 0.1 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|336476524|ref|YP_004615665.1| - 3.6e-12 45.4 0.1 7.1e-12 44.5 0.0 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_18 PF12847.2 gi|336476524|ref|YP_004615665.1| - 4.5e-06 27.2 0.0 8.1e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476524|ref|YP_004615665.1| - 3e-05 24.4 0.1 0.011 16.1 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476524|ref|YP_004615665.1| - 0.0099 15.4 1.1 2.7 7.5 0.0 2.5 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336476524|ref|YP_004615665.1| - 0.01 16.1 0.0 0.022 15.1 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Alpha-mann_mid PF09261.6 gi|336476524|ref|YP_004615665.1| - 0.027 14.6 0.0 0.089 13.0 0.0 1.9 1 0 0 1 1 1 0 Alpha mannosidase, middle domain Methyltransf_11 PF08241.7 gi|336476524|ref|YP_004615665.1| - 0.044 14.2 0.1 0.72 10.3 0.0 2.5 1 1 0 1 1 1 0 Methyltransferase domain CheC PF04509.7 gi|336476525|ref|YP_004615666.1| - 3.2e-17 61.9 0.8 7.4e-09 35.1 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|336476525|ref|YP_004615666.1| - 7.5e-10 38.5 3.1 1.9e-05 24.4 0.1 2.7 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX CheD PF03975.8 gi|336476526|ref|YP_004615667.1| - 6.7e-32 109.6 0.6 7.9e-32 109.3 0.4 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|336476527|ref|YP_004615668.1| - 5.9e-10 38.7 0.0 0.00088 18.9 0.0 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|336476527|ref|YP_004615668.1| - 0.00032 20.5 0.2 0.059 13.2 0.0 2.2 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX gag_pre-integrs PF13976.1 gi|336476528|ref|YP_004615669.1| - 0.08 12.5 0.5 0.19 11.3 0.3 1.7 1 0 0 1 1 1 0 GAG-pre-integrase domain PYC_OADA PF02436.13 gi|336476531|ref|YP_004615672.1| - 1.1e-65 220.7 0.3 1.8e-65 220.0 0.2 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|336476531|ref|YP_004615672.1| - 8.5e-42 143.4 0.0 1.2e-41 142.9 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|336476531|ref|YP_004615672.1| - 7e-20 70.4 3.3 2.2e-19 68.8 2.3 1.9 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|336476531|ref|YP_004615672.1| - 1.2e-11 44.0 0.6 3.8e-05 23.2 0.2 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|336476531|ref|YP_004615672.1| - 1.7e-05 24.2 0.7 0.0017 17.7 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|336476531|ref|YP_004615672.1| - 0.00094 18.4 0.3 0.21 10.6 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|336476531|ref|YP_004615672.1| - 0.0034 17.6 0.3 4.4 7.6 0.0 2.6 1 1 1 2 2 2 2 HlyD family secretion protein PYNP_C PF07831.8 gi|336476531|ref|YP_004615672.1| - 0.052 13.0 0.3 2.9 7.4 0.0 2.5 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain QRPTase_N PF02749.11 gi|336476531|ref|YP_004615672.1| - 0.16 11.8 0.2 9.1 6.1 0.0 2.9 2 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain CPSase_L_D2 PF02786.12 gi|336476532|ref|YP_004615673.1| - 5.6e-77 257.7 0.0 9.1e-77 257.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|336476532|ref|YP_004615673.1| - 1.9e-45 153.4 0.0 2.5e-44 149.8 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|336476532|ref|YP_004615673.1| - 7.2e-42 141.7 0.0 1.7e-41 140.5 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|336476532|ref|YP_004615673.1| - 8.3e-17 60.9 0.0 1.2e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|336476532|ref|YP_004615673.1| - 2.4e-15 56.7 0.0 5.5e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|336476532|ref|YP_004615673.1| - 3.8e-11 42.7 0.0 1.8e-10 40.5 0.0 2.1 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|336476532|ref|YP_004615673.1| - 4.1e-06 26.4 0.0 0.026 14.0 0.0 2.4 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476532|ref|YP_004615673.1| - 2.4e-05 24.2 0.0 4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|336476532|ref|YP_004615673.1| - 2.9e-05 23.4 0.0 6.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|336476532|ref|YP_004615673.1| - 0.003 17.1 0.0 0.0048 16.4 0.0 1.4 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BPL_LplA_LipB PF03099.14 gi|336476533|ref|YP_004615674.1| - 6e-21 74.7 0.1 1.1e-20 73.9 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|336476533|ref|YP_004615674.1| - 9.9e-17 60.3 0.2 2.5e-16 59.0 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|336476533|ref|YP_004615674.1| - 1.3e-08 34.0 0.0 3.4e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding BPL_C PF02237.12 gi|336476533|ref|YP_004615674.1| - 7.4e-05 22.3 0.1 0.00019 21.0 0.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain UPF0081 PF03652.10 gi|336476533|ref|YP_004615674.1| - 0.0014 18.7 0.0 0.46 10.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0081) MarR PF01047.17 gi|336476533|ref|YP_004615674.1| - 0.004 16.8 0.0 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|336476533|ref|YP_004615674.1| - 0.011 15.3 0.0 0.066 12.8 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|336476533|ref|YP_004615674.1| - 0.051 13.1 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Put_DNA-bind_N PF06971.8 gi|336476533|ref|YP_004615674.1| - 0.061 13.0 0.0 8.9 6.1 0.0 2.9 1 1 1 2 2 2 0 Putative DNA-binding protein N-terminus HTH_28 PF13518.1 gi|336476533|ref|YP_004615674.1| - 0.075 13.0 0.0 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336476533|ref|YP_004615674.1| - 0.089 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF134 PF02001.11 gi|336476533|ref|YP_004615674.1| - 0.11 12.4 0.1 1.7 8.5 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function DUF134 HTH_Tnp_Tc5 PF03221.11 gi|336476533|ref|YP_004615674.1| - 0.11 12.2 0.1 5.4 6.8 0.0 2.9 3 0 0 3 3 3 0 Tc5 transposase DNA-binding domain HTH_10 PF04967.7 gi|336476533|ref|YP_004615674.1| - 0.12 11.9 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain S-layer PF07752.6 gi|336476534|ref|YP_004615675.1| - 1.7e-07 30.7 0.2 2.2e-07 30.3 0.1 1.1 1 0 0 1 1 1 1 S-layer protein CENP-F_leu_zip PF10473.4 gi|336476535|ref|YP_004615676.1| - 3.5e-05 23.6 42.2 0.0028 17.4 13.2 3.1 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MCPsignal PF00015.16 gi|336476535|ref|YP_004615676.1| - 0.0003 20.3 13.1 0.043 13.3 0.4 2.6 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3450 PF11932.3 gi|336476535|ref|YP_004615676.1| - 0.00042 19.6 8.3 0.00042 19.6 5.8 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF3450) DUF4200 PF13863.1 gi|336476535|ref|YP_004615676.1| - 0.0011 18.9 41.2 0.0012 18.8 4.3 3.2 2 1 1 3 3 3 2 Domain of unknown function (DUF4200) DUF3584 PF12128.3 gi|336476535|ref|YP_004615676.1| - 0.0034 14.8 34.4 0.014 12.8 23.8 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|336476535|ref|YP_004615676.1| - 0.0058 16.3 2.7 0.0058 16.3 1.8 3.6 1 1 2 3 3 3 1 Laminin Domain II Reo_sigmaC PF04582.7 gi|336476535|ref|YP_004615676.1| - 0.0065 15.7 12.8 0.083 12.0 4.2 2.2 2 0 0 2 2 2 2 Reovirus sigma C capsid protein GAS PF13851.1 gi|336476535|ref|YP_004615676.1| - 0.0077 15.4 46.9 0.016 14.3 14.1 3.0 1 1 1 3 3 3 2 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.7 gi|336476535|ref|YP_004615676.1| - 0.0095 15.7 19.5 0.62 9.8 8.5 3.3 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_I PF06008.9 gi|336476535|ref|YP_004615676.1| - 0.018 14.3 32.0 0.14 11.4 6.3 3.0 1 1 2 3 3 3 0 Laminin Domain I APG6 PF04111.7 gi|336476535|ref|YP_004615676.1| - 0.026 13.5 43.6 0.08 11.9 5.3 2.9 1 1 2 3 3 3 0 Autophagy protein Apg6 Tropomyosin_1 PF12718.2 gi|336476535|ref|YP_004615676.1| - 0.035 13.9 43.2 0.2 11.4 10.1 3.4 1 1 2 3 3 3 0 Tropomyosin like Seryl_tRNA_N PF02403.17 gi|336476535|ref|YP_004615676.1| - 0.039 13.9 37.8 0.098 12.6 8.7 4.6 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF972 PF06156.8 gi|336476535|ref|YP_004615676.1| - 0.054 13.8 37.2 1.2 9.5 1.8 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF972) Atg14 PF10186.4 gi|336476535|ref|YP_004615676.1| - 0.065 12.1 35.5 0.048 12.5 9.7 2.6 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 ERM PF00769.14 gi|336476535|ref|YP_004615676.1| - 0.067 12.7 36.6 0.012 15.1 10.8 2.2 1 1 0 2 2 2 0 Ezrin/radixin/moesin family HrpB7 PF09486.5 gi|336476535|ref|YP_004615676.1| - 0.088 12.7 12.8 0.052 13.4 3.0 2.6 2 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) TPR_MLP1_2 PF07926.7 gi|336476535|ref|YP_004615676.1| - 0.11 12.2 40.6 0.34 10.6 9.7 3.0 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.5 gi|336476535|ref|YP_004615676.1| - 0.15 12.1 34.7 0.057 13.5 9.8 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|336476535|ref|YP_004615676.1| - 0.16 11.7 27.1 3.1 7.5 6.2 4.1 2 2 1 4 4 4 0 Protein of unknown function (DUF1664) MtrB PF05440.7 gi|336476535|ref|YP_004615676.1| - 0.21 11.6 3.7 12 6.0 0.1 3.8 2 1 0 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF2617 PF10936.3 gi|336476535|ref|YP_004615676.1| - 0.29 10.6 1.8 1.1 8.8 0.0 2.4 2 1 1 3 3 2 0 Protein of unknown function DUF2617 Flu_NS2 PF00601.14 gi|336476535|ref|YP_004615676.1| - 0.3 11.3 12.6 0.3 11.3 1.9 3.7 2 2 2 4 4 3 0 Influenza non-structural protein (NS2) WEMBL PF05701.6 gi|336476535|ref|YP_004615676.1| - 0.41 9.0 36.6 0.19 10.1 9.1 2.5 1 1 1 2 2 2 0 Weak chloroplast movement under blue light Sec8_exocyst PF04048.9 gi|336476535|ref|YP_004615676.1| - 0.47 10.0 28.2 2.2 7.8 5.3 3.8 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain TBPIP PF07106.8 gi|336476535|ref|YP_004615676.1| - 0.5 9.9 44.4 1.1 8.7 8.5 4.0 2 2 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|336476535|ref|YP_004615676.1| - 0.67 10.2 22.4 7.9 6.8 5.3 5.1 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Filament PF00038.16 gi|336476535|ref|YP_004615676.1| - 0.84 9.0 41.0 0.27 10.6 23.9 2.3 1 1 1 2 2 2 0 Intermediate filament protein Spc7 PF08317.6 gi|336476535|ref|YP_004615676.1| - 0.85 8.2 41.7 0.19 10.3 11.5 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.6 gi|336476535|ref|YP_004615676.1| - 1.2 9.5 28.4 1.1 9.7 2.2 4.4 2 2 2 4 4 4 0 Syntaxin 6, N-terminal IL2 PF00715.12 gi|336476535|ref|YP_004615676.1| - 1.3 8.7 10.7 0.41 10.3 3.4 2.5 2 0 0 2 2 2 0 Interleukin 2 AAA_13 PF13166.1 gi|336476535|ref|YP_004615676.1| - 1.3 7.3 41.1 0.44 8.9 18.1 2.1 1 1 1 2 2 2 0 AAA domain COG5 PF10392.4 gi|336476535|ref|YP_004615676.1| - 1.6 8.6 25.8 0.18 11.7 3.1 3.7 1 1 1 3 3 3 0 Golgi transport complex subunit 5 THOC7 PF05615.8 gi|336476535|ref|YP_004615676.1| - 2.1 8.5 33.0 0.018 15.3 4.5 2.9 1 1 0 2 2 2 0 Tho complex subunit 7 V_ATPase_I PF01496.14 gi|336476535|ref|YP_004615676.1| - 2.9 5.6 32.7 0.91 7.2 7.1 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DivIVA PF05103.8 gi|336476535|ref|YP_004615676.1| - 3.2 7.8 39.3 0.86 9.6 8.2 4.2 1 1 3 4 4 4 0 DivIVA protein WXG100 PF06013.7 gi|336476535|ref|YP_004615676.1| - 4.6 7.3 15.1 14 5.7 0.3 5.3 4 1 2 6 6 4 0 Proteins of 100 residues with WXG DUF357 PF04010.8 gi|336476535|ref|YP_004615676.1| - 4.8 6.9 7.8 22 4.8 0.2 3.9 3 1 0 4 4 4 0 Protein of unknown function (DUF357) EzrA PF06160.7 gi|336476535|ref|YP_004615676.1| - 5.1 5.1 40.1 0.11 10.7 10.2 2.1 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA TEX13 PF15186.1 gi|336476535|ref|YP_004615676.1| - 5.7 6.5 16.9 8.3 5.9 4.1 3.5 2 2 2 4 4 4 0 Testis-expressed sequence 13 protein family ApoO PF09769.4 gi|336476535|ref|YP_004615676.1| - 5.7 6.6 9.8 26 4.4 0.6 3.3 2 2 1 3 3 3 0 Apolipoprotein O DUF948 PF06103.6 gi|336476535|ref|YP_004615676.1| - 6 6.7 18.5 6.9 6.6 0.0 4.4 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) HOOK PF05622.7 gi|336476535|ref|YP_004615676.1| - 7.3 4.2 39.1 1.3 6.7 12.8 2.4 1 1 0 2 2 2 0 HOOK protein Spectrin PF00435.16 gi|336476535|ref|YP_004615676.1| - 7.7 6.8 27.8 0.52 10.6 6.3 4.0 2 2 0 3 3 3 0 Spectrin repeat PspA_IM30 PF04012.7 gi|336476535|ref|YP_004615676.1| - 8.2 5.7 31.5 19 4.5 7.4 4.0 1 1 1 2 2 2 0 PspA/IM30 family MscS_porin PF12795.2 gi|336476535|ref|YP_004615676.1| - 9.1 5.5 39.7 2 7.6 1.7 4.1 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain IncA PF04156.9 gi|336476536|ref|YP_004615677.1| - 0.16 11.5 13.2 0.67 9.5 5.0 2.2 1 1 1 2 2 2 0 IncA protein CorA PF01544.13 gi|336476536|ref|YP_004615677.1| - 0.26 10.2 3.4 0.41 9.6 2.3 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|336476536|ref|YP_004615677.1| - 0.45 10.1 15.0 0.58 9.8 5.9 2.3 1 1 1 2 2 2 0 Mnd1 family Fib_alpha PF08702.5 gi|336476536|ref|YP_004615677.1| - 0.46 10.5 10.9 8.7 6.4 0.5 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Hemagglutinin PF00509.13 gi|336476536|ref|YP_004615677.1| - 0.51 8.4 4.7 0.09 10.8 0.4 1.8 2 0 0 2 2 2 0 Haemagglutinin DUF972 PF06156.8 gi|336476536|ref|YP_004615677.1| - 2.9 8.2 10.7 20 5.6 3.7 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF4200 PF13863.1 gi|336476536|ref|YP_004615677.1| - 8.2 6.3 18.7 23 4.9 0.7 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) APG6 PF04111.7 gi|336476536|ref|YP_004615677.1| - 8.2 5.3 16.1 3.6 6.5 0.7 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 DUF424 PF04242.8 gi|336476537|ref|YP_004615678.1| - 4.2e-30 103.6 0.1 4.7e-30 103.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.18 gi|336476538|ref|YP_004615679.1| - 2.3e-124 414.5 0.1 1.9e-62 210.9 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family MCM_N PF14551.1 gi|336476538|ref|YP_004615679.1| - 1.6e-15 57.6 2.0 2.3e-15 57.1 0.2 2.2 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|336476538|ref|YP_004615679.1| - 0.0013 18.5 0.1 0.0091 15.7 0.0 2.5 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) DUF4072 PF13284.1 gi|336476538|ref|YP_004615679.1| - 0.1 12.8 0.7 0.62 10.2 1.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) SpoU_methylase PF00588.14 gi|336476539|ref|YP_004615680.1| - 6.6e-32 110.3 0.1 8.6e-32 109.9 0.1 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|336476539|ref|YP_004615680.1| - 0.0024 17.3 0.0 0.011 15.1 0.0 2.0 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DapB_N PF01113.15 gi|336476539|ref|YP_004615680.1| - 0.0057 16.5 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Fer4 PF00037.22 gi|336476540|ref|YP_004615681.1| - 3.3e-14 51.7 13.4 1.2e-08 34.1 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476540|ref|YP_004615681.1| - 2.4e-13 50.2 23.5 1.6e-09 37.9 8.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476540|ref|YP_004615681.1| - 9.4e-13 47.7 23.1 8.1e-11 41.5 8.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476540|ref|YP_004615681.1| - 3.6e-12 45.4 14.2 2e-08 33.6 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336476540|ref|YP_004615681.1| - 2.8e-11 42.7 13.3 4.6e-07 29.4 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336476540|ref|YP_004615681.1| - 5.1e-09 35.8 9.6 7.1e-09 35.3 6.6 1.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476540|ref|YP_004615681.1| - 1.6e-07 31.0 13.1 4.3e-05 23.5 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336476540|ref|YP_004615681.1| - 3.8e-07 30.5 8.9 1.2e-06 28.9 0.4 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|336476540|ref|YP_004615681.1| - 4.7e-07 29.7 12.6 1.2e-06 28.4 8.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476540|ref|YP_004615681.1| - 1e-06 28.9 14.0 3.3e-06 27.2 9.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476540|ref|YP_004615681.1| - 1.6e-06 28.4 9.6 0.0031 17.9 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476540|ref|YP_004615681.1| - 9.8e-05 22.6 14.0 0.005 17.1 2.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476540|ref|YP_004615681.1| - 0.00015 22.1 3.1 0.00015 22.1 2.1 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|336476540|ref|YP_004615681.1| - 0.00053 20.6 13.6 0.15 12.8 2.6 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|336476540|ref|YP_004615681.1| - 0.00069 19.9 18.8 0.0065 16.9 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_19 PF06902.6 gi|336476540|ref|YP_004615681.1| - 0.0031 17.3 4.5 0.71 9.7 0.1 2.1 2 0 0 2 2 2 2 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.1 gi|336476540|ref|YP_004615681.1| - 0.094 12.6 5.5 0.74 9.7 0.2 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF4001 PF13165.1 gi|336476540|ref|YP_004615681.1| - 2.2 8.0 6.9 11 5.8 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) NIR_SIR PF01077.17 gi|336476541|ref|YP_004615682.1| - 8.8e-36 122.6 0.0 1.5e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|336476541|ref|YP_004615682.1| - 3.7e-14 52.1 0.0 5.6e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Nitrate_red_gam PF02665.9 gi|336476542|ref|YP_004615683.1| - 1.5e-06 27.7 14.0 2.4e-05 23.8 3.1 2.5 1 1 1 2 2 2 2 Nitrate reductase gamma subunit SHR3_chaperone PF08229.6 gi|336476542|ref|YP_004615683.1| - 0.063 12.2 0.7 0.12 11.3 0.5 1.6 1 0 0 1 1 1 0 ER membrane protein SH3 CCG PF02754.11 gi|336476543|ref|YP_004615684.1| - 5.5e-36 122.4 1.7 2.3e-18 65.9 0.0 3.1 4 0 0 4 4 4 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|336476543|ref|YP_004615684.1| - 1e-09 38.2 7.6 1.5e-09 37.6 3.0 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476543|ref|YP_004615684.1| - 2.1e-07 31.1 11.4 1e-06 28.9 6.0 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476543|ref|YP_004615684.1| - 2.2e-06 28.3 1.4 0.053 14.2 0.1 3.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|336476543|ref|YP_004615684.1| - 3.1e-06 27.3 12.5 0.008 16.4 0.9 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476543|ref|YP_004615684.1| - 1.1e-05 25.7 8.1 0.01 16.2 0.4 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476543|ref|YP_004615684.1| - 4.8e-05 23.0 8.2 4.8e-05 23.0 5.7 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336476543|ref|YP_004615684.1| - 0.00014 22.1 11.0 0.00031 21.0 6.1 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476543|ref|YP_004615684.1| - 0.0053 16.5 8.6 0.52 10.2 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476543|ref|YP_004615684.1| - 0.23 11.4 16.7 0.31 11.0 0.5 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.22 gi|336476543|ref|YP_004615684.1| - 4.3 7.0 19.5 0.74 9.5 1.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336476543|ref|YP_004615684.1| - 5.3 7.6 11.7 8 7.1 0.5 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain DUF116 PF01976.12 gi|336476544|ref|YP_004615685.1| - 1.6e-42 144.6 9.0 2e-42 144.3 6.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF116 PF01976.12 gi|336476545|ref|YP_004615686.1| - 2e-37 128.1 1.4 2.5e-37 127.8 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF21 PF01595.15 gi|336476545|ref|YP_004615686.1| - 0.085 12.1 1.6 0.15 11.3 1.0 1.5 1 1 1 2 2 2 0 Domain of unknown function DUF21 PilX_N PF14341.1 gi|336476545|ref|YP_004615686.1| - 0.18 11.4 3.3 0.15 11.7 0.8 1.9 2 0 0 2 2 2 0 PilX N-terminal Dus PF01207.12 gi|336476546|ref|YP_004615687.1| - 3.1e-14 52.5 0.2 1.1e-13 50.7 0.1 1.7 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|336476546|ref|YP_004615687.1| - 7.4e-07 28.6 0.4 6.1e-06 25.6 0.0 2.0 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|336476546|ref|YP_004615687.1| - 3.6e-06 26.1 0.0 6.1e-06 25.3 0.0 1.3 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Oxidored_FMN PF00724.15 gi|336476546|ref|YP_004615687.1| - 0.035 13.0 0.0 0.41 9.5 0.0 2.3 2 0 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family Glu_synthase PF01645.12 gi|336476546|ref|YP_004615687.1| - 0.091 11.6 0.6 0.15 10.9 0.4 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase Viral_cys_rich PF08008.7 gi|336476546|ref|YP_004615687.1| - 0.16 11.5 0.8 2.9 7.5 0.1 2.6 2 0 0 2 2 2 0 Viral cysteine rich CitG PF01874.11 gi|336476547|ref|YP_004615688.1| - 6.1e-76 255.2 0.0 7e-76 255.0 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF2610 PF11020.3 gi|336476547|ref|YP_004615688.1| - 0.15 11.8 0.0 0.36 10.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) DUF447 PF04289.7 gi|336476548|ref|YP_004615689.1| - 5.3e-49 166.1 0.0 6.1e-49 165.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) B12-binding PF02310.14 gi|336476549|ref|YP_004615690.1| - 1.9e-25 89.0 0.8 2.9e-25 88.4 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|336476549|ref|YP_004615690.1| - 3.1e-19 68.7 2.4 3.4e-19 68.6 0.7 1.8 2 0 0 2 2 2 1 B12 binding domain ComA PF02679.10 gi|336476549|ref|YP_004615690.1| - 0.00036 19.6 4.2 0.18 10.7 0.1 2.3 1 1 1 2 2 2 2 (2R)-phospho-3-sulfolactate synthase (ComA) Glyco_hydro_3_C PF01915.17 gi|336476549|ref|YP_004615690.1| - 0.016 14.7 0.4 0.02 14.3 0.3 1.4 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain UPF0052 PF01933.13 gi|336476549|ref|YP_004615690.1| - 0.023 14.0 0.2 0.045 13.0 0.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0052 UPF0180 PF03698.8 gi|336476549|ref|YP_004615690.1| - 0.025 14.4 0.3 0.1 12.4 0.1 2.2 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) DNA_pol3_gamma3 PF12169.3 gi|336476549|ref|YP_004615690.1| - 0.06 13.0 0.2 0.24 11.1 0.0 2.0 2 0 0 2 2 2 0 DNA polymerase III subunits gamma and tau domain III Hydrolase PF00702.21 gi|336476549|ref|YP_004615690.1| - 0.092 13.1 2.5 0.14 12.5 0.7 1.8 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Peripla_BP_4 PF13407.1 gi|336476549|ref|YP_004615690.1| - 0.32 10.2 6.0 1.8 7.8 0.1 2.9 2 1 0 2 2 2 0 Periplasmic binding protein domain Dimeth_Pyl PF09505.5 gi|336476550|ref|YP_004615691.1| - 1.9e-276 916.6 11.3 2.1e-276 916.5 7.8 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|336476550|ref|YP_004615691.1| - 0.0066 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Scorpion antimicrobial peptide Lamprin PF06403.6 gi|336476550|ref|YP_004615691.1| - 0.013 15.2 0.1 0.058 13.1 0.0 2.0 2 0 0 2 2 2 0 Lamprin Response_reg PF00072.19 gi|336476551|ref|YP_004615692.1| - 1.2e-22 80.0 0.1 1.3e-22 79.8 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|336476552|ref|YP_004615693.1| - 9e-21 73.9 0.1 1e-20 73.8 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.7 gi|336476553|ref|YP_004615694.1| - 2.1e-32 110.8 2.3 2.1e-32 110.8 1.6 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|336476553|ref|YP_004615694.1| - 6.4e-17 61.4 0.0 1.4e-16 60.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold Cache_1 PF02743.13 gi|336476553|ref|YP_004615694.1| - 2.6e-10 39.7 0.2 3.8e-09 35.9 0.0 2.5 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.21 gi|336476553|ref|YP_004615694.1| - 4.6e-09 35.9 0.3 1.2e-08 34.6 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|336476553|ref|YP_004615694.1| - 2.5e-08 33.9 3.8 0.0031 17.6 0.1 3.1 2 1 1 3 3 3 2 HAMP domain PAS PF00989.19 gi|336476553|ref|YP_004615694.1| - 3.9e-05 23.3 0.1 0.00033 20.4 0.0 2.7 4 0 0 4 4 4 1 PAS fold PAS_9 PF13426.1 gi|336476553|ref|YP_004615694.1| - 8.3e-05 22.9 0.0 0.00023 21.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.9 gi|336476553|ref|YP_004615694.1| - 0.00028 21.2 0.1 0.00095 19.5 0.1 2.0 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|336476553|ref|YP_004615694.1| - 0.0015 18.3 0.0 0.0038 17.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336476553|ref|YP_004615694.1| - 0.013 15.1 1.5 0.044 13.4 0.3 2.3 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|336476553|ref|YP_004615694.1| - 0.031 14.3 0.0 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 PAS fold DUF3112 PF11309.3 gi|336476553|ref|YP_004615694.1| - 2.6 7.8 7.2 0.71 9.6 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3112) dCMP_cyt_deam_1 PF00383.17 gi|336476554|ref|YP_004615695.1| - 2.4e-23 81.6 0.1 3e-23 81.3 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|336476554|ref|YP_004615695.1| - 0.0036 16.9 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 APOBEC-like N-terminal domain adh_short PF00106.20 gi|336476555|ref|YP_004615696.1| - 5.6e-32 110.9 0.1 6.9e-32 110.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336476555|ref|YP_004615696.1| - 2e-25 89.9 0.0 2.5e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336476555|ref|YP_004615696.1| - 1.1e-15 57.7 0.0 1.6e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336476555|ref|YP_004615696.1| - 1.2e-06 28.6 0.0 1.8e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|336476555|ref|YP_004615696.1| - 0.0036 16.7 0.2 0.006 16.0 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family CBS PF00571.23 gi|336476555|ref|YP_004615696.1| - 0.005 16.6 0.5 1.4 8.8 0.0 2.4 2 0 0 2 2 2 1 CBS domain DFP PF04127.10 gi|336476555|ref|YP_004615696.1| - 0.0053 16.3 0.1 0.016 14.8 0.0 1.7 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Shikimate_DH PF01488.15 gi|336476555|ref|YP_004615696.1| - 0.0077 16.3 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3Beta_HSD PF01073.14 gi|336476555|ref|YP_004615696.1| - 0.015 14.0 0.1 0.017 13.8 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.14 gi|336476555|ref|YP_004615696.1| - 0.018 14.0 0.1 0.11 11.5 0.0 2.1 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Saccharop_dh PF03435.13 gi|336476555|ref|YP_004615696.1| - 0.02 13.8 0.1 0.042 12.8 0.1 1.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|336476555|ref|YP_004615696.1| - 0.021 15.2 0.4 0.082 13.3 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|336476555|ref|YP_004615696.1| - 0.11 11.7 0.2 0.18 11.0 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family 3HCDH_N PF02737.13 gi|336476555|ref|YP_004615696.1| - 0.19 11.3 1.2 0.52 9.9 0.5 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2238 PF09997.4 gi|336476556|ref|YP_004615697.1| - 0.00075 18.9 1.3 0.00075 18.9 0.9 4.5 3 3 1 4 4 4 1 Predicted membrane protein (DUF2238) Glycophorin_A PF01102.13 gi|336476556|ref|YP_004615697.1| - 0.031 14.0 0.1 0.1 12.3 0.0 1.9 1 0 0 1 1 1 0 Glycophorin A Ion_trans PF00520.26 gi|336476557|ref|YP_004615698.1| - 2.4e-21 75.9 16.1 2.4e-21 75.9 11.2 1.7 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|336476557|ref|YP_004615698.1| - 6.6e-12 44.9 9.4 6.6e-12 44.9 6.5 2.4 2 1 0 2 2 2 1 Ion channel DUF4231 PF14015.1 gi|336476557|ref|YP_004615698.1| - 1.4 8.9 8.4 18 5.3 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4231) DUF3317 PF11779.3 gi|336476557|ref|YP_004615698.1| - 7.9 6.0 12.1 1.2 8.6 0.7 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3317) AIM24 PF01987.12 gi|336476558|ref|YP_004615699.1| - 2.9e-47 160.8 1.2 3.5e-47 160.6 0.9 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF378 PF04070.7 gi|336476559|ref|YP_004615700.1| - 2.2e-21 75.2 5.5 2.3e-21 75.1 3.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) CybS PF05328.7 gi|336476559|ref|YP_004615700.1| - 0.12 12.0 0.2 0.13 11.8 0.1 1.0 1 0 0 1 1 1 0 CybS DUF2892 PF11127.3 gi|336476559|ref|YP_004615700.1| - 8.9 6.2 7.2 8.7 6.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) FMN_red PF03358.10 gi|336476560|ref|YP_004615701.1| - 1.8e-26 92.4 0.0 2.2e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336476560|ref|YP_004615701.1| - 1.6e-11 44.1 0.0 1.9e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold UB2H PF14814.1 gi|336476560|ref|YP_004615701.1| - 0.1 12.3 0.1 0.71 9.6 0.0 2.3 3 0 0 3 3 3 0 Bifunctional transglycosylase second domain Flavodoxin_5 PF12724.2 gi|336476560|ref|YP_004615701.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain Rubrerythrin PF02915.12 gi|336476561|ref|YP_004615702.1| - 2.3e-05 24.7 2.6 2.7e-05 24.4 1.8 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|336476561|ref|YP_004615702.1| - 0.00037 20.2 1.4 0.00061 19.5 0.9 1.5 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|336476561|ref|YP_004615702.1| - 0.0099 16.1 0.2 0.015 15.5 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) DUF3450 PF11932.3 gi|336476561|ref|YP_004615702.1| - 0.012 14.8 0.6 0.015 14.5 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Mnd1 PF03962.10 gi|336476561|ref|YP_004615702.1| - 0.039 13.6 3.2 0.044 13.4 2.2 1.1 1 0 0 1 1 1 0 Mnd1 family DUF2175 PF09943.4 gi|336476561|ref|YP_004615702.1| - 0.22 11.5 2.1 0.28 11.2 1.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF427 PF04248.7 gi|336476562|ref|YP_004615703.1| - 1.2e-11 44.0 0.5 1.4e-11 43.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) DUF402 PF04167.8 gi|336476562|ref|YP_004615703.1| - 0.022 14.5 0.6 0.036 13.8 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF402) EamA PF00892.15 gi|336476563|ref|YP_004615704.1| - 1.4e-13 50.9 40.5 3.2e-08 33.6 11.7 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336476563|ref|YP_004615704.1| - 0.00012 22.2 11.7 0.00012 22.2 8.1 4.1 1 1 3 4 4 4 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|336476563|ref|YP_004615704.1| - 0.16 11.7 11.5 0.11 12.2 0.6 2.9 2 1 1 3 3 3 0 Uncharacterised protein family UPF0546 URO-D PF01208.12 gi|336476564|ref|YP_004615705.1| - 5.1e-77 259.1 0.0 5.7e-77 258.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Flu_B_M2 PF04772.7 gi|336476564|ref|YP_004615705.1| - 0.15 12.1 0.0 0.48 10.5 0.0 1.8 2 0 0 2 2 2 0 Influenza B matrix protein 2 (BM2) MreB_Mbl PF06723.8 gi|336476565|ref|YP_004615706.1| - 7.6e-09 34.6 0.1 8.9e-07 27.8 0.1 2.8 2 1 0 2 2 2 2 MreB/Mbl protein FtsA PF14450.1 gi|336476565|ref|YP_004615706.1| - 0.011 15.5 0.4 0.011 15.5 0.3 2.0 2 1 0 2 2 2 0 Cell division protein FtsA DUF1144 PF06610.8 gi|336476566|ref|YP_004615707.1| - 0.07 12.8 0.2 0.07 12.8 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1144) Oxidored_q2 PF00420.19 gi|336476566|ref|YP_004615707.1| - 0.1 12.2 0.4 0.1 12.2 0.3 2.1 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YebO PF13974.1 gi|336476566|ref|YP_004615707.1| - 1 9.2 6.2 0.48 10.2 1.6 2.2 2 0 0 2 2 2 0 YebO-like protein Colicin-DNase PF12639.2 gi|336476566|ref|YP_004615707.1| - 2.6 8.3 6.2 0.58 10.4 1.3 2.0 1 1 1 2 2 2 0 DNase/tRNase domain of colicin-like bacteriocin DUF872 PF05915.7 gi|336476566|ref|YP_004615707.1| - 3.1 7.6 8.2 0.37 10.6 1.7 2.3 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF4131 PF13567.1 gi|336476566|ref|YP_004615707.1| - 4.5 6.6 6.4 12 5.2 2.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) OTCace PF00185.19 gi|336476567|ref|YP_004615708.1| - 3.4e-56 189.4 0.0 5.7e-56 188.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|336476567|ref|YP_004615708.1| - 2.4e-53 179.6 0.1 3.9e-53 178.9 0.1 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PALP PF00291.20 gi|336476567|ref|YP_004615708.1| - 0.034 13.3 0.0 0.057 12.6 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme GARS_A PF01071.14 gi|336476568|ref|YP_004615709.1| - 1.3e-56 191.2 0.0 3.3e-56 189.9 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|336476568|ref|YP_004615709.1| - 3.6e-32 110.7 0.3 1.1e-31 109.2 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|336476568|ref|YP_004615709.1| - 5.5e-20 71.3 0.2 1.2e-19 70.2 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|336476568|ref|YP_004615709.1| - 2.1e-13 50.4 0.0 4.5e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476568|ref|YP_004615709.1| - 0.0064 16.3 0.0 0.018 14.9 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|336476568|ref|YP_004615709.1| - 0.015 15.8 0.2 0.13 12.7 0.0 2.5 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Pribosyltran PF00156.22 gi|336476569|ref|YP_004615710.1| - 4e-14 52.4 4.4 8.8e-14 51.3 2.6 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336476569|ref|YP_004615710.1| - 0.028 13.6 0.1 0.04 13.1 0.1 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF46 PF01864.12 gi|336476570|ref|YP_004615711.1| - 1.7e-53 181.0 7.3 2e-53 180.8 5.0 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|336476570|ref|YP_004615711.1| - 5.7e-08 32.7 2.2 5.7e-08 32.7 1.5 2.3 2 1 1 3 3 3 1 Cytidylyltransferase family SNARE_assoc PF09335.6 gi|336476570|ref|YP_004615711.1| - 1.5 9.0 6.1 0.35 11.0 1.3 2.2 2 1 0 2 2 2 0 SNARE associated Golgi protein ResB PF05140.9 gi|336476571|ref|YP_004615712.1| - 0.00011 20.9 3.1 0.013 14.1 0.1 2.2 1 1 0 2 2 2 2 ResB-like family DUF2881 PF11087.3 gi|336476571|ref|YP_004615712.1| - 0.023 14.1 1.8 0.055 12.9 0.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2881) PgaD PF13994.1 gi|336476571|ref|YP_004615712.1| - 0.18 11.2 3.8 0.67 9.4 2.6 1.9 1 0 0 1 1 1 0 PgaD-like protein Cytochrom_C_asm PF01578.15 gi|336476572|ref|YP_004615713.1| - 2.3e-33 115.5 25.5 2.3e-33 115.5 17.7 2.5 2 2 0 2 2 2 1 Cytochrome C assembly protein HTH_29 PF13551.1 gi|336476573|ref|YP_004615714.1| - 2e-15 56.8 0.0 2.5e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|336476573|ref|YP_004615714.1| - 1.2e-08 34.8 0.4 4.8e-08 32.8 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|336476573|ref|YP_004615714.1| - 2e-08 34.9 0.1 3.2e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_23 PF13384.1 gi|336476573|ref|YP_004615714.1| - 3.8e-08 32.7 0.1 8.5e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.1 gi|336476573|ref|YP_004615714.1| - 1.5e-05 24.3 2.5 8.8e-05 21.9 0.0 3.0 4 0 0 4 4 4 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.1 gi|336476573|ref|YP_004615714.1| - 0.0021 18.3 0.0 0.0029 17.9 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_7 PF02796.10 gi|336476573|ref|YP_004615714.1| - 0.027 14.3 0.1 5 7.0 0.1 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF1825 PF08855.5 gi|336476573|ref|YP_004615714.1| - 0.12 12.3 0.3 0.25 11.3 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) Peptidase_S74 PF13884.1 gi|336476573|ref|YP_004615714.1| - 0.55 10.3 2.7 2.5 8.2 1.9 2.3 1 1 0 1 1 1 0 Chaperone of endosialidase B12-binding_2 PF02607.12 gi|336476574|ref|YP_004615715.1| - 3.8e-19 68.4 0.1 8.5e-19 67.3 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|336476574|ref|YP_004615715.1| - 7.8e-19 67.7 0.4 1.2e-18 67.1 0.3 1.2 1 0 0 1 1 1 1 B12 binding domain Ssl1 PF04056.9 gi|336476574|ref|YP_004615715.1| - 0.027 14.0 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like BATS PF06968.8 gi|336476574|ref|YP_004615715.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain SpoVAD PF07451.6 gi|336476574|ref|YP_004615715.1| - 0.13 10.7 1.3 2.2 6.6 0.1 2.2 1 1 1 2 2 2 0 Stage V sporulation protein AD (SpoVAD) MtmB PF05369.7 gi|336476575|ref|YP_004615716.1| - 3.3e-277 918.8 2.9 3.7e-277 918.7 2.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB Lyase_1 PF00206.15 gi|336476576|ref|YP_004615717.1| - 7.1e-53 179.8 0.4 1.3e-52 178.9 0.3 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|336476576|ref|YP_004615717.1| - 2.5e-24 85.1 0.6 4.7e-24 84.1 0.1 1.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|336476576|ref|YP_004615717.1| - 0.00065 19.7 0.4 0.17 11.9 0.0 3.8 5 0 0 5 5 5 1 Argininosuccinate lyase C-terminal ABC_tran PF00005.22 gi|336476577|ref|YP_004615718.1| - 1.9e-21 76.8 0.4 2.4e-10 40.8 0.1 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|336476577|ref|YP_004615718.1| - 5.1e-13 48.7 0.3 0.0056 15.9 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336476577|ref|YP_004615718.1| - 1.4e-08 35.1 5.4 0.0041 17.1 0.0 4.4 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|336476577|ref|YP_004615718.1| - 2e-07 30.4 0.2 0.0064 15.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336476577|ref|YP_004615718.1| - 3e-07 30.5 0.0 0.0017 18.4 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain AAA_14 PF13173.1 gi|336476577|ref|YP_004615718.1| - 1.2e-06 28.4 0.2 0.34 10.8 0.1 3.6 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|336476577|ref|YP_004615718.1| - 1.7e-06 28.5 1.6 0.02 15.2 0.3 2.8 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|336476577|ref|YP_004615718.1| - 1.8e-06 27.2 0.4 0.045 12.9 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 DnaJ_CXXCXGXG PF00684.14 gi|336476577|ref|YP_004615718.1| - 3.5e-06 26.9 5.4 0.028 14.4 0.2 3.5 3 0 0 3 3 3 2 DnaJ central domain AAA_22 PF13401.1 gi|336476577|ref|YP_004615718.1| - 5.9e-06 26.4 1.4 0.059 13.5 0.0 3.9 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|336476577|ref|YP_004615718.1| - 8.8e-06 26.0 1.0 0.044 14.0 0.1 3.0 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|336476577|ref|YP_004615718.1| - 1.8e-05 24.2 0.0 0.098 12.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|336476577|ref|YP_004615718.1| - 1.9e-05 25.4 8.5 0.025 15.4 0.1 4.0 4 0 0 4 4 3 2 AAA domain APS_kinase PF01583.15 gi|336476577|ref|YP_004615718.1| - 0.00011 21.9 0.2 0.41 10.3 0.1 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase T2SE PF00437.15 gi|336476577|ref|YP_004615718.1| - 0.00012 21.1 1.3 0.28 10.0 0.1 2.8 3 0 0 3 3 3 2 Type II/IV secretion system protein MobB PF03205.9 gi|336476577|ref|YP_004615718.1| - 0.00014 21.6 0.4 0.013 15.2 0.1 2.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|336476577|ref|YP_004615718.1| - 0.00022 21.1 0.0 0.81 9.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain Viral_helicase1 PF01443.13 gi|336476577|ref|YP_004615718.1| - 0.0011 18.6 0.2 0.039 13.4 0.2 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|336476577|ref|YP_004615718.1| - 0.0012 18.3 0.2 0.54 9.6 0.0 2.7 2 0 0 2 2 2 1 AAA-like domain Arch_ATPase PF01637.13 gi|336476577|ref|YP_004615718.1| - 0.0019 17.9 1.1 0.95 9.1 0.0 3.1 3 0 0 3 3 3 1 Archaeal ATPase MMR_HSR1 PF01926.18 gi|336476577|ref|YP_004615718.1| - 0.002 18.0 0.8 0.27 11.1 0.1 3.2 3 0 0 3 3 2 1 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|336476577|ref|YP_004615718.1| - 0.002 17.1 0.0 0.73 8.7 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TF_Zn_Ribbon PF08271.7 gi|336476577|ref|YP_004615718.1| - 0.0024 17.1 0.9 0.052 12.8 0.1 2.9 2 0 0 2 2 2 1 TFIIB zinc-binding AAA_19 PF13245.1 gi|336476577|ref|YP_004615718.1| - 0.0032 17.1 0.0 2.5 7.8 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain PRK PF00485.13 gi|336476577|ref|YP_004615718.1| - 0.0044 16.6 0.2 0.85 9.1 0.0 2.6 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RNA12 PF10443.4 gi|336476577|ref|YP_004615718.1| - 0.0058 15.1 0.0 0.95 7.8 0.0 2.2 2 0 0 2 2 2 1 RNA12 protein ArgK PF03308.11 gi|336476577|ref|YP_004615718.1| - 0.0064 15.3 0.0 0.16 10.6 0.0 2.4 2 0 0 2 2 2 1 ArgK protein KaiC PF06745.8 gi|336476577|ref|YP_004615718.1| - 0.0068 15.5 0.1 3.7 6.5 0.0 2.6 2 0 0 2 2 2 0 KaiC cobW PF02492.14 gi|336476577|ref|YP_004615718.1| - 0.0085 15.5 1.1 0.28 10.6 0.2 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|336476577|ref|YP_004615718.1| - 0.0088 15.7 0.7 0.9 9.1 0.1 2.6 3 0 0 3 3 2 1 NACHT domain Zeta_toxin PF06414.7 gi|336476577|ref|YP_004615718.1| - 0.014 14.5 0.0 3.5 6.6 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_15 PF13175.1 gi|336476577|ref|YP_004615718.1| - 0.014 14.4 13.5 1.2 8.0 0.0 4.4 3 2 1 5 5 5 0 AAA ATPase domain NB-ARC PF00931.17 gi|336476577|ref|YP_004615718.1| - 0.019 13.8 0.0 0.57 8.9 0.0 2.8 3 0 0 3 3 3 0 NB-ARC domain NTPase_1 PF03266.10 gi|336476577|ref|YP_004615718.1| - 0.021 14.5 2.4 0.21 11.2 0.1 3.0 3 0 0 3 3 2 0 NTPase Miro PF08477.8 gi|336476577|ref|YP_004615718.1| - 0.026 15.0 0.2 9.1 6.8 0.1 3.0 2 0 0 2 2 2 0 Miro-like protein BCA_ABC_TP_C PF12399.3 gi|336476577|ref|YP_004615718.1| - 0.03 13.9 3.3 1.7 8.4 0.1 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter zf-ribbon_3 PF13248.1 gi|336476577|ref|YP_004615718.1| - 0.05 12.8 1.0 5.1 6.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|336476577|ref|YP_004615718.1| - 0.052 13.8 4.6 50 4.3 0.1 4.0 4 0 0 4 4 4 0 Restriction alleviation protein Lar RNA_helicase PF00910.17 gi|336476577|ref|YP_004615718.1| - 0.057 13.6 0.2 3.7 7.7 0.1 2.5 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.1 gi|336476577|ref|YP_004615718.1| - 0.066 13.1 0.4 4.4 7.2 0.1 2.4 2 0 0 2 2 2 0 AAA domain Herpes_Helicase PF02689.9 gi|336476577|ref|YP_004615718.1| - 0.072 10.8 0.0 0.34 8.5 0.0 1.8 2 0 0 2 2 2 0 Helicase LuxS PF02664.10 gi|336476577|ref|YP_004615718.1| - 0.12 11.9 0.2 8.4 5.9 0.0 3.7 4 0 0 4 4 3 0 S-Ribosylhomocysteinase (LuxS) UPF0547 PF10571.4 gi|336476577|ref|YP_004615718.1| - 0.13 11.9 2.1 1.8 8.3 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 AAA_30 PF13604.1 gi|336476577|ref|YP_004615718.1| - 0.16 11.4 0.0 17 4.8 0.0 2.6 3 0 0 3 3 2 0 AAA domain TatD_DNase PF01026.16 gi|336476578|ref|YP_004615719.1| - 2.4e-29 102.2 0.0 2.9e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Iso_dh PF00180.15 gi|336476579|ref|YP_004615720.1| - 3.7e-86 289.2 0.0 4.2e-86 289.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase HMGL-like PF00682.14 gi|336476580|ref|YP_004615721.1| - 2.3e-33 115.8 0.0 3.5e-33 115.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ACT PF01842.20 gi|336476581|ref|YP_004615722.1| - 0.00035 19.9 0.1 0.00074 18.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain CM_2 PF01817.16 gi|336476581|ref|YP_004615722.1| - 0.016 15.3 0.0 0.068 13.2 0.0 1.8 2 0 0 2 2 2 0 Chorismate mutase type II Response_reg PF00072.19 gi|336476582|ref|YP_004615723.1| - 2.6e-21 75.7 1.8 2.7e-21 75.6 0.2 1.8 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.1 gi|336476582|ref|YP_004615723.1| - 6e-12 45.8 0.1 1.2e-11 44.9 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336476582|ref|YP_004615723.1| - 7.9e-09 35.5 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|336476582|ref|YP_004615723.1| - 1.9e-08 34.0 0.0 4.3e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|336476582|ref|YP_004615723.1| - 0.00022 20.9 0.0 0.00052 19.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain IF4E PF01652.13 gi|336476582|ref|YP_004615723.1| - 0.091 12.2 1.0 1.7 8.1 0.1 2.2 1 1 1 2 2 2 0 Eukaryotic initiation factor 4E PAS_3 PF08447.6 gi|336476583|ref|YP_004615724.1| - 3.3e-41 139.2 3.6 1e-15 57.5 0.2 4.5 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.7 gi|336476583|ref|YP_004615724.1| - 2.9e-31 107.1 3.4 2.9e-31 107.1 2.3 2.8 3 0 0 3 3 2 1 Histidine kinase PAS_9 PF13426.1 gi|336476583|ref|YP_004615724.1| - 2.5e-29 101.6 7.4 1.1e-09 38.6 0.1 4.5 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|336476583|ref|YP_004615724.1| - 5.2e-25 87.4 1.7 1.4e-10 40.9 0.1 4.5 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|336476583|ref|YP_004615724.1| - 5.9e-12 45.2 0.0 1.3e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|336476583|ref|YP_004615724.1| - 1.7e-11 44.0 0.0 0.00057 19.8 0.0 3.5 3 0 0 3 3 3 3 PAS fold GAF_3 PF13492.1 gi|336476583|ref|YP_004615724.1| - 2.1e-07 31.0 0.0 5.6e-07 29.7 0.0 1.8 2 0 0 2 2 1 1 GAF domain PAS_8 PF13188.1 gi|336476583|ref|YP_004615724.1| - 6.3e-07 29.0 0.0 3e-05 23.7 0.0 3.2 3 0 0 3 3 3 1 PAS domain GAF PF01590.21 gi|336476583|ref|YP_004615724.1| - 9.9e-07 29.0 0.0 1.6e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 GAF domain HWE_HK PF07536.9 gi|336476583|ref|YP_004615724.1| - 2.9e-06 27.5 0.7 2.9e-06 27.5 0.5 2.1 2 0 0 2 2 1 1 HWE histidine kinase PAS_11 PF14598.1 gi|336476583|ref|YP_004615724.1| - 3e-05 23.9 0.9 0.48 10.3 0.0 3.7 3 1 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|336476583|ref|YP_004615724.1| - 0.011 16.2 0.0 0.031 14.7 0.0 1.8 1 1 0 1 1 1 0 GAF domain VWA_2 PF13519.1 gi|336476584|ref|YP_004615725.1| - 2.9e-15 56.8 0.1 1.7e-11 44.5 0.0 3.2 2 1 1 3 3 3 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|336476584|ref|YP_004615725.1| - 3.9e-08 32.8 0.1 4e-07 29.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1355) DUF4350 PF14258.1 gi|336476584|ref|YP_004615725.1| - 0.044 13.9 0.4 1.5 9.1 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|336476584|ref|YP_004615725.1| - 0.086 12.5 0.0 0.43 10.2 0.0 2.1 2 0 0 2 2 2 0 Trehalose utilisation BatA PF07584.6 gi|336476585|ref|YP_004615726.1| - 2.5e-15 56.4 8.1 2.5e-15 56.4 5.6 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal Glyco_hydro_42M PF08532.5 gi|336476585|ref|YP_004615726.1| - 0.0029 16.8 0.0 0.03 13.4 0.0 2.3 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain ABC_transp_aux PF09822.4 gi|336476585|ref|YP_004615726.1| - 0.0039 16.7 0.0 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 ABC-type uncharacterized transport system VWA_CoxE PF05762.9 gi|336476585|ref|YP_004615726.1| - 0.0074 15.4 0.3 0.015 14.4 0.2 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein ASRT PF07100.6 gi|336476585|ref|YP_004615726.1| - 0.055 13.2 0.2 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 Anabaena sensory rhodopsin transducer DUF4350 PF14258.1 gi|336476585|ref|YP_004615726.1| - 0.059 13.5 0.1 4.9 7.4 0.0 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) VWA_2 PF13519.1 gi|336476585|ref|YP_004615726.1| - 0.062 13.4 6.1 0.32 11.0 1.5 2.6 1 1 1 2 2 2 0 von Willebrand factor type A domain DUF58 PF01882.13 gi|336476586|ref|YP_004615727.1| - 8.1e-21 73.9 0.0 2e-20 72.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|336476586|ref|YP_004615727.1| - 2.6e-08 33.2 0.0 4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|336476586|ref|YP_004615727.1| - 8.9e-07 29.1 0.1 1.1e-06 28.8 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|336476586|ref|YP_004615727.1| - 0.034 13.8 1.4 0.056 13.1 0.9 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain AAA_3 PF07726.6 gi|336476587|ref|YP_004615728.1| - 1.2e-61 206.1 0.1 1.8e-61 205.5 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336476587|ref|YP_004615728.1| - 2.2e-11 43.6 0.0 4.9e-11 42.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|336476587|ref|YP_004615728.1| - 2.5e-05 24.4 0.0 8.4e-05 22.7 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|336476587|ref|YP_004615728.1| - 4.3e-05 22.4 0.2 0.0015 17.4 0.2 2.1 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|336476587|ref|YP_004615728.1| - 0.0025 17.3 0.1 0.016 14.6 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|336476587|ref|YP_004615728.1| - 0.0089 15.0 0.3 0.11 11.5 0.2 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|336476587|ref|YP_004615728.1| - 0.082 12.0 0.1 0.45 9.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF4231 PF14015.1 gi|336476588|ref|YP_004615729.1| - 0.2 11.6 2.4 0.34 10.9 1.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) PDT PF00800.13 gi|336476589|ref|YP_004615730.1| - 1.2e-59 200.9 0.1 1.5e-59 200.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|336476589|ref|YP_004615730.1| - 9.4e-09 34.5 0.1 8e-08 31.6 0.0 2.3 2 1 0 2 2 2 1 ACT domain ABC2_membrane_3 PF12698.2 gi|336476589|ref|YP_004615730.1| - 0.16 10.9 0.0 0.87 8.5 0.0 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein E1-E2_ATPase PF00122.15 gi|336476590|ref|YP_004615731.1| - 9.1e-73 244.0 1.4 9.1e-73 244.0 1.0 3.0 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|336476590|ref|YP_004615731.1| - 2.6e-40 137.8 9.2 2.6e-40 137.8 6.4 2.2 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|336476590|ref|YP_004615731.1| - 7.4e-40 137.6 0.0 2.7e-39 135.8 0.0 2.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|336476590|ref|YP_004615731.1| - 1.3e-19 69.4 0.0 5e-19 67.5 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|336476590|ref|YP_004615731.1| - 1.9e-19 70.6 0.0 3.7e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|336476590|ref|YP_004615731.1| - 9.8e-15 54.2 0.0 2.4e-14 53.0 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|336476590|ref|YP_004615731.1| - 6.9e-08 32.3 2.7 0.00057 19.5 0.5 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|336476590|ref|YP_004615731.1| - 0.0092 16.2 0.1 0.046 13.9 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|336476590|ref|YP_004615731.1| - 0.025 14.7 0.1 0.46 10.6 0.0 2.6 2 1 1 3 3 3 0 Radical SAM superfamily Cytadhesin_P30 PF07271.6 gi|336476590|ref|YP_004615731.1| - 1 8.5 2.7 1.4 8.1 0.4 2.1 2 1 1 3 3 3 0 Cytadhesin P30/P32 Methyltransf_31 PF13847.1 gi|336476591|ref|YP_004615732.1| - 2.9e-18 65.9 0.0 4.5e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336476591|ref|YP_004615732.1| - 6.8e-18 64.9 0.0 1.2e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336476591|ref|YP_004615732.1| - 3.9e-16 59.1 0.0 4.7e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336476591|ref|YP_004615732.1| - 1.1e-14 55.0 0.0 1.5e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336476591|ref|YP_004615732.1| - 3.6e-11 43.3 0.0 5.5e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336476591|ref|YP_004615732.1| - 2.4e-10 39.9 0.0 3.6e-10 39.3 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|336476591|ref|YP_004615732.1| - 1e-07 32.3 0.0 1.6e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336476591|ref|YP_004615732.1| - 4e-06 26.5 0.0 7e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|336476591|ref|YP_004615732.1| - 0.00021 20.8 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_9 PF08003.6 gi|336476591|ref|YP_004615732.1| - 0.00027 19.7 0.0 0.00032 19.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|336476591|ref|YP_004615732.1| - 0.00073 18.6 0.1 0.003 16.6 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|336476591|ref|YP_004615732.1| - 0.00085 19.3 0.0 0.0021 18.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|336476591|ref|YP_004615732.1| - 0.00087 18.4 0.0 0.0016 17.6 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.12 gi|336476591|ref|YP_004615732.1| - 0.0022 16.9 0.0 0.0035 16.2 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin CM1 PF03026.10 gi|336476591|ref|YP_004615732.1| - 0.0025 16.9 0.1 0.0038 16.3 0.0 1.2 1 0 0 1 1 1 1 Influenza C virus M1 protein Methyltransf_3 PF01596.12 gi|336476591|ref|YP_004615732.1| - 0.0041 16.1 0.0 0.0047 15.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Bin3 PF06859.7 gi|336476591|ref|YP_004615732.1| - 0.0061 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Bicoid-interacting protein 3 (Bin3) Methyltransf_32 PF13679.1 gi|336476591|ref|YP_004615732.1| - 0.041 13.5 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|336476591|ref|YP_004615732.1| - 0.054 12.8 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|336476591|ref|YP_004615732.1| - 0.1 12.5 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Caps_synth_GfcC PF06251.6 gi|336476591|ref|YP_004615732.1| - 0.16 11.0 0.1 0.31 10.1 0.0 1.4 2 0 0 2 2 2 0 Capsule biosynthesis GfcC ETRAMP PF09716.5 gi|336476593|ref|YP_004615734.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Molydop_binding PF01568.16 gi|336476595|ref|YP_004615736.1| - 1.1e-11 44.5 0.0 1.3e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2849 PF11011.3 gi|336476595|ref|YP_004615736.1| - 0.099 12.8 0.0 0.67 10.2 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2849) Molybdopterin PF00384.17 gi|336476596|ref|YP_004615737.1| - 8.8e-06 24.7 0.1 0.067 11.9 0.0 2.5 2 1 0 2 2 2 2 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|336476596|ref|YP_004615737.1| - 0.014 15.1 0.1 2.7 7.7 0.0 2.9 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain FeS PF04060.8 gi|336476597|ref|YP_004615738.1| - 8e-15 54.1 1.1 8e-15 54.1 0.8 2.5 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.22 gi|336476597|ref|YP_004615738.1| - 4.7e-10 38.6 21.1 3.7e-08 32.6 2.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476597|ref|YP_004615738.1| - 1.1e-08 35.2 29.5 9.5e-07 28.9 7.2 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476597|ref|YP_004615738.1| - 1.5e-07 30.9 21.3 9.2e-06 25.3 2.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476597|ref|YP_004615738.1| - 2.4e-07 31.0 18.2 0.00041 20.6 6.7 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476597|ref|YP_004615738.1| - 4.4e-07 29.4 17.7 2.3e-06 27.1 2.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476597|ref|YP_004615738.1| - 1.1e-06 28.5 9.2 7.6e-06 25.8 3.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476597|ref|YP_004615738.1| - 3.6e-06 26.7 13.1 9.8e-05 22.1 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476597|ref|YP_004615738.1| - 9.7e-05 22.7 10.2 0.00023 21.5 0.3 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476597|ref|YP_004615738.1| - 0.00014 22.1 14.4 0.00014 22.1 4.6 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|336476597|ref|YP_004615738.1| - 0.00016 21.9 3.6 0.00016 21.9 2.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336476597|ref|YP_004615738.1| - 0.00034 21.1 11.9 0.0013 19.2 5.2 3.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|336476597|ref|YP_004615738.1| - 0.00041 20.1 21.7 0.00042 20.0 8.1 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476597|ref|YP_004615738.1| - 0.00042 20.4 3.1 0.00042 20.4 2.1 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476597|ref|YP_004615738.1| - 0.00067 20.3 17.8 0.22 12.2 0.6 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|336476597|ref|YP_004615738.1| - 0.001 19.4 24.0 0.027 15.0 0.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain YhfH PF14149.1 gi|336476597|ref|YP_004615738.1| - 0.0041 16.8 1.6 0.0041 16.8 1.1 2.6 3 0 0 3 3 2 1 YhfH-like protein Fer4_11 PF13247.1 gi|336476597|ref|YP_004615738.1| - 0.02 14.7 11.9 5.6 6.9 8.2 3.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain FeThRed_B PF02943.10 gi|336476598|ref|YP_004615739.1| - 2.5e-26 91.5 2.6 2.8e-26 91.3 1.8 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain NUMOD3 PF07460.6 gi|336476598|ref|YP_004615739.1| - 0.16 11.8 0.3 0.16 11.8 0.2 1.6 2 0 0 2 2 2 0 NUMOD3 motif (2 copies) Transpos_assoc PF13963.1 gi|336476598|ref|YP_004615739.1| - 0.64 10.0 3.2 2.3 8.2 0.1 2.3 1 1 1 2 2 2 0 Transposase-associated domain FlpD PF02662.11 gi|336476599|ref|YP_004615740.1| - 2.1e-51 172.7 5.2 4.4e-48 162.0 0.1 4.4 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.9 gi|336476599|ref|YP_004615740.1| - 2.6e-14 53.5 1.3 1.6e-09 37.9 0.9 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|336476599|ref|YP_004615740.1| - 3.8e-13 49.5 34.5 2e-07 31.2 7.8 5.0 5 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476599|ref|YP_004615740.1| - 5.9e-12 45.2 40.5 2e-05 24.3 9.3 5.4 5 1 1 6 6 5 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476599|ref|YP_004615740.1| - 1.7e-11 43.1 55.6 2.7e-07 29.8 2.1 6.0 6 1 0 6 6 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476599|ref|YP_004615740.1| - 7.9e-10 38.3 35.3 8.2e-05 22.3 0.0 5.2 5 1 1 6 6 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476599|ref|YP_004615740.1| - 4.6e-07 29.4 13.2 9.4e-05 22.1 2.5 6.0 7 0 0 7 7 5 4 4Fe-4S binding domain DAO PF01266.19 gi|336476599|ref|YP_004615740.1| - 4.8e-07 28.9 0.1 6e-05 22.0 0.1 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Fer4_16 PF13484.1 gi|336476599|ref|YP_004615740.1| - 6.4e-07 30.0 28.8 0.019 15.7 0.1 5.2 5 1 0 5 5 4 3 4Fe-4S double cluster binding domain Pyr_redox PF00070.22 gi|336476599|ref|YP_004615740.1| - 8.7e-07 29.2 1.2 2.6e-05 24.5 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.1 gi|336476599|ref|YP_004615740.1| - 1.3e-06 28.5 43.8 6.5e-06 26.3 7.7 5.0 4 1 2 6 6 6 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476599|ref|YP_004615740.1| - 1.3e-06 27.9 50.5 0.00052 19.7 1.6 5.8 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476599|ref|YP_004615740.1| - 2.8e-06 27.2 33.8 0.0014 18.6 7.8 4.7 3 2 3 6 6 6 4 4Fe-4S dicluster domain GIDA PF01134.17 gi|336476599|ref|YP_004615740.1| - 3.4e-06 26.1 0.2 7.9e-05 21.6 0.0 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|336476599|ref|YP_004615740.1| - 4.2e-06 26.6 0.0 2.3e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336476599|ref|YP_004615740.1| - 1e-05 24.5 0.2 2.1e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|336476599|ref|YP_004615740.1| - 1.7e-05 24.0 0.0 2.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_15 PF13459.1 gi|336476599|ref|YP_004615740.1| - 9.2e-05 22.9 23.2 0.033 14.7 1.0 4.9 4 0 0 4 4 4 2 4Fe-4S single cluster domain Pyr_redox_3 PF13738.1 gi|336476599|ref|YP_004615740.1| - 0.00011 22.3 0.0 0.00093 19.3 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336476599|ref|YP_004615740.1| - 0.00027 19.5 0.1 0.00045 18.8 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|336476599|ref|YP_004615740.1| - 0.00058 19.0 0.0 0.0015 17.6 0.0 1.6 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|336476599|ref|YP_004615740.1| - 0.0023 17.0 0.2 0.0045 16.0 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|336476599|ref|YP_004615740.1| - 0.003 17.7 0.0 0.8 9.9 0.0 3.1 2 1 0 2 2 2 1 Putative NAD(P)-binding Fer4_17 PF13534.1 gi|336476599|ref|YP_004615740.1| - 0.0041 17.4 34.4 0.089 13.1 4.3 5.0 3 2 3 6 6 5 4 4Fe-4S dicluster domain K_oxygenase PF13434.1 gi|336476599|ref|YP_004615740.1| - 0.007 15.3 0.1 1.1 8.1 0.0 2.8 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_13 PF13370.1 gi|336476599|ref|YP_004615740.1| - 0.046 14.1 26.0 0.14 12.5 1.0 4.4 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|336476599|ref|YP_004615740.1| - 0.062 13.7 0.4 0.062 13.7 0.3 5.4 5 1 1 6 6 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476599|ref|YP_004615740.1| - 0.11 12.8 49.1 0.059 13.7 2.1 6.1 6 0 0 6 6 4 0 4Fe-4S binding domain Lycopene_cycl PF05834.7 gi|336476599|ref|YP_004615740.1| - 0.12 11.2 0.0 0.38 9.6 0.1 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|336476599|ref|YP_004615740.1| - 0.18 10.8 0.0 12 4.8 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4 PF00037.22 gi|336476600|ref|YP_004615741.1| - 6.6e-39 129.9 78.5 1.1e-08 34.3 1.6 8.4 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476600|ref|YP_004615741.1| - 2e-35 120.9 50.0 2e-11 44.0 3.7 4.8 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476600|ref|YP_004615741.1| - 2.9e-29 99.6 75.4 3.2e-06 26.7 1.3 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476600|ref|YP_004615741.1| - 7.8e-28 96.0 62.2 2.9e-10 39.7 4.6 6.6 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476600|ref|YP_004615741.1| - 5.7e-25 87.3 63.8 4.6e-07 30.0 6.6 6.1 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476600|ref|YP_004615741.1| - 1.4e-23 82.4 61.8 4.1e-06 26.5 4.7 6.7 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476600|ref|YP_004615741.1| - 7.5e-21 72.7 73.7 3.3e-06 26.6 1.6 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476600|ref|YP_004615741.1| - 8.2e-19 67.3 58.2 5.6e-06 26.3 6.4 5.8 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476600|ref|YP_004615741.1| - 1e-17 64.5 59.5 0.00017 22.2 6.2 7.0 4 2 3 7 7 7 6 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|336476600|ref|YP_004615741.1| - 9.1e-13 48.3 56.4 0.00072 19.8 5.2 7.1 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476600|ref|YP_004615741.1| - 6.9e-12 44.6 73.9 0.00091 19.3 2.1 8.4 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336476600|ref|YP_004615741.1| - 3.1e-10 40.4 60.5 0.0046 17.4 1.1 8.4 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336476600|ref|YP_004615741.1| - 6.1e-07 29.5 96.9 0.0047 17.3 5.2 8.4 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336476600|ref|YP_004615741.1| - 2e-06 28.1 59.1 0.0054 17.1 0.2 8.3 7 1 1 8 8 8 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476600|ref|YP_004615741.1| - 6.6e-06 26.4 61.7 0.11 12.9 0.6 8.5 8 0 0 8 8 8 4 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|336476600|ref|YP_004615741.1| - 8.5e-05 22.3 38.0 0.02 14.7 5.9 5.0 2 2 2 4 4 4 3 4Fe-4S dicluster domain GatB_N PF02934.10 gi|336476601|ref|YP_004615742.1| - 3.5e-72 242.6 0.1 4.9e-72 242.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|336476601|ref|YP_004615742.1| - 6.4e-22 77.8 0.1 1.3e-21 76.8 0.1 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|336476601|ref|YP_004615742.1| - 9.2e-14 51.3 0.1 3.2e-13 49.6 0.0 2.0 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|336476601|ref|YP_004615742.1| - 3e-05 23.8 1.9 3.8e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 Yqey-like protein HTH_24 PF13412.1 gi|336476601|ref|YP_004615742.1| - 0.029 13.7 0.0 0.067 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ComX PF05952.7 gi|336476601|ref|YP_004615742.1| - 0.039 13.4 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacillus competence pheromone ComX DUF389 PF04087.9 gi|336476602|ref|YP_004615743.1| - 3.1e-34 117.8 18.7 3.1e-34 117.8 13.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF389) CPSase_sm_chain PF00988.17 gi|336476603|ref|YP_004615744.1| - 3.2e-50 168.9 0.0 5.2e-50 168.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|336476603|ref|YP_004615744.1| - 1.1e-38 132.6 0.0 1.5e-38 132.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336476603|ref|YP_004615744.1| - 1.4e-06 27.9 0.3 0.00021 20.7 0.2 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|336476604|ref|YP_004615745.1| - 5.4e-107 355.8 0.4 4.4e-69 231.9 0.1 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|336476604|ref|YP_004615745.1| - 1.6e-47 160.1 0.0 9.2e-23 80.4 0.0 3.0 3 0 0 3 3 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|336476604|ref|YP_004615745.1| - 4.2e-42 142.8 0.3 1.5e-41 141.0 0.1 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|336476604|ref|YP_004615745.1| - 9.8e-42 142.7 0.0 9.5e-20 71.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336476604|ref|YP_004615745.1| - 3.7e-27 94.9 0.0 3.3e-12 45.7 0.0 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|336476604|ref|YP_004615745.1| - 4.4e-22 77.8 0.5 6.7e-21 74.0 0.0 3.3 4 0 0 4 4 4 1 MGS-like domain Dala_Dala_lig_C PF07478.8 gi|336476604|ref|YP_004615745.1| - 4.5e-16 58.8 0.0 9.4e-07 28.4 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|336476604|ref|YP_004615745.1| - 7.1e-16 58.0 0.0 7.5e-07 28.6 0.0 2.6 3 0 0 3 3 3 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476604|ref|YP_004615745.1| - 2.2e-15 56.9 0.7 2.7e-06 27.3 0.0 2.9 3 0 0 3 3 3 2 ATP-grasp domain GARS_A PF01071.14 gi|336476604|ref|YP_004615745.1| - 2.6e-09 36.9 0.0 0.0014 18.2 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Epimerase PF01370.16 gi|336476604|ref|YP_004615745.1| - 0.0059 16.0 0.0 0.051 13.0 0.0 2.2 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family ATP-grasp_5 PF13549.1 gi|336476604|ref|YP_004615745.1| - 0.02 14.1 0.0 0.24 10.5 0.0 2.6 2 0 0 2 2 2 0 ATP-grasp domain MerR-DNA-bind PF09278.6 gi|336476604|ref|YP_004615745.1| - 0.079 13.3 0.0 2.5 8.5 0.0 3.4 4 0 0 4 4 4 0 MerR, DNA binding Arginosuc_synth PF00764.14 gi|336476605|ref|YP_004615746.1| - 3.8e-175 582.5 0.0 4.3e-175 582.3 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|336476605|ref|YP_004615746.1| - 0.00021 20.9 0.0 0.00034 20.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|336476605|ref|YP_004615746.1| - 0.00037 19.8 0.0 0.0015 17.8 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|336476605|ref|YP_004615746.1| - 0.0091 14.9 0.0 0.016 14.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|336476605|ref|YP_004615746.1| - 0.092 11.2 0.0 0.17 10.3 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase DUF318 PF03773.8 gi|336476607|ref|YP_004615748.1| - 9.8e-51 172.5 21.5 1.7e-50 171.7 14.9 1.4 1 1 0 1 1 1 1 Predicted permease MFS_1 PF07690.11 gi|336476607|ref|YP_004615748.1| - 0.26 9.9 28.6 0.029 13.1 15.7 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily DUF3341 PF11821.3 gi|336476607|ref|YP_004615748.1| - 1.1 8.6 3.7 3.1 7.2 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3341) PadR PF03551.9 gi|336476608|ref|YP_004615749.1| - 1.6e-19 69.4 0.0 2.5e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|336476608|ref|YP_004615749.1| - 5.3e-08 32.7 0.1 9.6e-08 31.9 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|336476608|ref|YP_004615749.1| - 0.057 13.2 0.0 0.073 12.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_27 PF13463.1 gi|336476608|ref|YP_004615749.1| - 0.12 12.7 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain CTP_transf_1 PF01148.15 gi|336476609|ref|YP_004615750.1| - 2.3e-08 34.0 21.1 3.3e-07 30.2 6.9 2.8 1 1 0 2 2 2 2 Cytidylyltransferase family TadE PF07811.7 gi|336476609|ref|YP_004615750.1| - 0.088 12.7 0.8 0.088 12.7 0.6 2.2 2 0 0 2 2 2 0 TadE-like protein DUF2061 PF09834.4 gi|336476609|ref|YP_004615750.1| - 2.8 8.1 9.8 1.3 9.2 0.5 3.3 2 1 1 3 3 3 0 Predicted membrane protein (DUF2061) Citrate_synt PF00285.16 gi|336476610|ref|YP_004615751.1| - 1.9e-124 415.0 0.0 2.1e-124 414.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase SDF PF00375.13 gi|336476611|ref|YP_004615752.1| - 3.3e-121 404.7 45.8 3.8e-121 404.5 31.8 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family RimK PF08443.6 gi|336476612|ref|YP_004615753.1| - 9e-64 214.4 0.0 1.1e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|336476612|ref|YP_004615753.1| - 5.8e-18 64.6 0.3 8.9e-18 64.0 0.2 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336476612|ref|YP_004615753.1| - 1.2e-13 51.2 0.0 1.7e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476612|ref|YP_004615753.1| - 7e-10 38.9 0.0 1.7e-09 37.7 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336476612|ref|YP_004615753.1| - 6.4e-05 21.8 0.0 0.00021 20.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|336476612|ref|YP_004615753.1| - 0.00027 20.4 0.2 0.0046 16.3 0.2 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_2 PF08442.5 gi|336476612|ref|YP_004615753.1| - 0.0014 18.0 0.3 0.06 12.7 0.0 2.2 1 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|336476612|ref|YP_004615753.1| - 0.0015 17.6 0.0 0.53 9.3 0.0 2.4 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp DUF4343 PF14243.1 gi|336476612|ref|YP_004615753.1| - 0.017 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4343) AstE_AspA PF04952.9 gi|336476613|ref|YP_004615754.1| - 2.7e-55 187.3 0.0 3.1e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.3 gi|336476613|ref|YP_004615754.1| - 0.00073 18.7 0.0 0.0083 15.2 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2817) DUF2119 PF09892.4 gi|336476613|ref|YP_004615754.1| - 0.0061 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Peptidase_M14 PF00246.19 gi|336476613|ref|YP_004615754.1| - 0.0096 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Zinc carboxypeptidase RimK PF08443.6 gi|336476614|ref|YP_004615755.1| - 1.4e-46 158.4 0.0 2e-46 157.8 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|336476614|ref|YP_004615755.1| - 7.7e-16 57.7 0.0 1e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336476614|ref|YP_004615755.1| - 2.8e-14 53.2 0.0 5e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476614|ref|YP_004615755.1| - 2.9e-07 30.5 0.0 4.2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336476614|ref|YP_004615755.1| - 4.5e-07 28.9 0.0 1.1e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|336476614|ref|YP_004615755.1| - 3.9e-05 23.0 0.0 0.00011 21.5 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|336476614|ref|YP_004615755.1| - 0.00012 21.5 0.0 0.00095 18.6 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus Synapsin_C PF02750.9 gi|336476614|ref|YP_004615755.1| - 0.0012 17.9 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Synapsin, ATP binding domain ATPgrasp_ST PF14397.1 gi|336476614|ref|YP_004615755.1| - 0.0018 17.4 0.9 0.014 14.4 0.1 2.5 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.12 gi|336476614|ref|YP_004615755.1| - 0.0041 16.4 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|336476614|ref|YP_004615755.1| - 0.0075 15.5 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|336476614|ref|YP_004615755.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HATPase_c PF02518.21 gi|336476615|ref|YP_004615756.1| - 9.8e-23 79.9 0.0 2.7e-22 78.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_1 PF02743.13 gi|336476615|ref|YP_004615756.1| - 1.2e-13 50.4 0.2 2.3e-12 46.2 0.0 2.9 2 1 1 3 3 3 1 Cache domain PAS_9 PF13426.1 gi|336476615|ref|YP_004615756.1| - 3.1e-09 37.1 0.1 1.1e-08 35.4 0.0 2.0 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|336476615|ref|YP_004615756.1| - 3.8e-06 26.8 0.3 1.1e-05 25.2 0.2 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|336476615|ref|YP_004615756.1| - 2.1e-05 24.5 0.0 4.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|336476615|ref|YP_004615756.1| - 6.4e-05 22.7 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|336476615|ref|YP_004615756.1| - 0.00022 21.0 0.0 0.00045 19.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold KOW PF00467.24 gi|336476615|ref|YP_004615756.1| - 0.012 15.3 0.2 0.039 13.6 0.1 1.9 1 0 0 1 1 1 0 KOW motif HATPase_c_5 PF14501.1 gi|336476615|ref|YP_004615756.1| - 0.013 15.2 0.5 0.07 12.8 0.0 2.5 3 0 0 3 3 3 0 GHKL domain HATPase_c_3 PF13589.1 gi|336476615|ref|YP_004615756.1| - 0.028 14.0 0.1 0.073 12.7 0.1 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|336476615|ref|YP_004615756.1| - 0.028 14.5 0.1 0.028 14.5 0.0 1.9 2 0 0 2 2 2 0 HAMP domain UPF0104 PF03706.8 gi|336476616|ref|YP_004615757.1| - 4.5e-42 144.3 22.5 5.3e-42 144.0 15.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) NAS PF03059.11 gi|336476617|ref|YP_004615758.1| - 6.2e-08 32.1 0.0 8.1e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_18 PF12847.2 gi|336476617|ref|YP_004615758.1| - 5.8e-07 30.0 0.0 8.4e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476617|ref|YP_004615758.1| - 7.8e-06 25.5 0.1 1.1e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336476617|ref|YP_004615758.1| - 9.7e-06 25.6 0.0 1.3e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|336476617|ref|YP_004615758.1| - 4.7e-05 23.0 0.1 7.3e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|336476617|ref|YP_004615758.1| - 0.00022 21.5 0.0 0.00036 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|336476617|ref|YP_004615758.1| - 0.00026 19.9 0.0 0.00046 19.2 0.0 1.5 1 0 0 1 1 1 1 Spermine/spermidine synthase NAD_binding_7 PF13241.1 gi|336476617|ref|YP_004615758.1| - 0.00028 21.0 0.1 0.00047 20.3 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Methyltransf_3 PF01596.12 gi|336476617|ref|YP_004615758.1| - 0.0032 16.5 0.0 0.005 15.9 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.9 gi|336476617|ref|YP_004615758.1| - 0.0036 16.6 0.0 0.0056 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Pyr_redox PF00070.22 gi|336476617|ref|YP_004615758.1| - 0.0043 17.4 0.0 0.0095 16.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|336476617|ref|YP_004615758.1| - 0.015 14.7 0.7 0.063 12.7 0.2 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Methyltransf_24 PF13578.1 gi|336476617|ref|YP_004615758.1| - 0.019 15.8 0.0 0.027 15.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|336476617|ref|YP_004615758.1| - 0.023 14.7 0.2 0.21 11.6 0.1 2.1 1 1 1 2 2 2 0 TrkA-N domain PrmA PF06325.8 gi|336476617|ref|YP_004615758.1| - 0.023 13.8 0.1 0.029 13.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DJ-1_PfpI PF01965.19 gi|336476617|ref|YP_004615758.1| - 0.035 13.5 0.0 2.9 7.3 0.0 2.2 2 0 0 2 2 2 0 DJ-1/PfpI family AlaDh_PNT_C PF01262.16 gi|336476617|ref|YP_004615758.1| - 0.043 13.3 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|336476617|ref|YP_004615758.1| - 0.074 13.1 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain XdhC_C PF13478.1 gi|336476617|ref|YP_004615758.1| - 0.082 13.2 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|336476617|ref|YP_004615758.1| - 0.11 12.1 0.2 0.37 10.4 0.0 1.9 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FeoB_N PF02421.13 gi|336476618|ref|YP_004615759.1| - 5.2e-49 165.5 0.5 9.5e-49 164.6 0.3 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|336476618|ref|YP_004615759.1| - 1.1e-20 73.6 20.7 3.4e-11 42.9 2.1 3.1 3 0 0 3 3 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|336476618|ref|YP_004615759.1| - 8.9e-15 54.6 0.2 1.5e-14 53.9 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|336476618|ref|YP_004615759.1| - 3.6e-10 39.1 1.1 3.6e-10 39.1 0.7 3.0 3 0 0 3 3 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|336476618|ref|YP_004615759.1| - 1.3e-05 24.5 0.0 2.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.7 gi|336476618|ref|YP_004615759.1| - 0.00066 18.8 0.0 0.00094 18.3 0.0 1.2 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region PduV-EutP PF10662.4 gi|336476618|ref|YP_004615759.1| - 0.0041 16.6 0.0 0.0074 15.7 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|336476618|ref|YP_004615759.1| - 0.014 14.8 0.1 0.04 13.3 0.1 1.7 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|336476618|ref|YP_004615759.1| - 0.018 14.8 0.3 0.13 12.0 0.0 2.0 1 1 1 2 2 2 0 Dynamin family Arf PF00025.16 gi|336476618|ref|YP_004615759.1| - 0.04 13.1 0.0 0.078 12.2 0.0 1.5 1 1 0 1 1 1 0 ADP-ribosylation factor family AIG1 PF04548.11 gi|336476618|ref|YP_004615759.1| - 0.05 12.6 0.1 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 AIG1 family Miro PF08477.8 gi|336476618|ref|YP_004615759.1| - 0.054 13.9 0.0 0.091 13.2 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein FeoA PF04023.9 gi|336476619|ref|YP_004615760.1| - 2.8e-11 43.2 0.0 2.8e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 FeoA domain PYNP_C PF07831.8 gi|336476620|ref|YP_004615761.1| - 7.4e-16 57.3 0.2 2.4e-15 55.7 0.0 2.0 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|336476620|ref|YP_004615761.1| - 9.6e-14 50.7 0.1 2.1e-13 49.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|336476620|ref|YP_004615761.1| - 1.1e-11 44.6 0.8 3.5e-10 39.7 0.5 2.3 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|336476620|ref|YP_004615761.1| - 5.4e-07 29.4 0.1 1.9e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|336476620|ref|YP_004615761.1| - 0.0054 16.6 0.1 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain HlyD_3 PF13437.1 gi|336476620|ref|YP_004615761.1| - 0.041 14.2 0.3 0.73 10.2 0.0 2.9 3 0 0 3 3 3 0 HlyD family secretion protein Peptidase_C26 PF07722.8 gi|336476620|ref|YP_004615761.1| - 0.062 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Trm56 PF01994.11 gi|336476621|ref|YP_004615762.1| - 2.2e-50 169.4 0.0 2.7e-50 169.1 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 NIF3 PF01784.13 gi|336476622|ref|YP_004615763.1| - 1.9e-55 188.0 2.3 2.4e-55 187.7 1.6 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) CARDB PF07705.6 gi|336476623|ref|YP_004615764.1| - 1.5e-09 37.8 12.3 0.0073 16.3 0.3 4.4 5 0 0 5 5 5 3 CARDB DUF11 PF01345.13 gi|336476623|ref|YP_004615764.1| - 5.1e-09 36.0 2.0 0.00017 21.5 0.0 3.5 4 0 0 4 4 4 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|336476623|ref|YP_004615764.1| - 3e-07 29.7 3.7 0.018 14.2 0.1 3.3 2 1 1 3 3 3 3 Translocon-associated protein beta (TRAPB) Glyco_hydro_2 PF00703.16 gi|336476623|ref|YP_004615764.1| - 0.27 11.7 3.1 2.2 8.7 0.1 3.2 3 0 0 3 3 3 0 Glycosyl hydrolases family 2 DHHA1 PF02272.14 gi|336476624|ref|YP_004615765.1| - 2.5e-13 49.4 0.3 8.7e-13 47.7 0.1 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|336476624|ref|YP_004615765.1| - 4.4e-09 36.1 0.0 7.6e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 DHH family Imm10 PF15562.1 gi|336476624|ref|YP_004615765.1| - 0.085 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 10 MMR_HSR1 PF01926.18 gi|336476625|ref|YP_004615766.1| - 3.2e-17 62.5 0.2 4.7e-17 62.0 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|336476625|ref|YP_004615766.1| - 3.4e-11 42.6 0.3 4.3e-10 39.0 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|336476625|ref|YP_004615766.1| - 1.8e-05 24.2 0.1 0.00014 21.3 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|336476625|ref|YP_004615766.1| - 0.0032 17.3 0.1 0.0074 16.1 0.1 1.5 1 1 0 1 1 1 1 Dynamin family DUF258 PF03193.11 gi|336476625|ref|YP_004615766.1| - 0.0059 15.7 0.4 0.027 13.6 0.2 2.1 2 1 0 2 2 2 1 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|336476625|ref|YP_004615766.1| - 0.0074 15.5 0.5 0.019 14.1 0.3 1.7 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MobB PF03205.9 gi|336476625|ref|YP_004615766.1| - 0.052 13.2 1.2 0.11 12.2 0.3 1.8 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|336476625|ref|YP_004615766.1| - 0.061 13.6 1.1 0.19 12.0 0.8 1.8 1 1 0 1 1 1 0 ABC transporter U5_2-snRNA_bdg PF10597.4 gi|336476625|ref|YP_004615766.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 YcaO PF02624.11 gi|336476625|ref|YP_004615766.1| - 0.16 11.4 0.0 0.22 10.9 0.0 1.1 1 0 0 1 1 1 0 YcaO-like family Miro PF08477.8 gi|336476625|ref|YP_004615766.1| - 0.2 12.1 1.0 1.1 9.7 0.7 2.2 1 1 0 1 1 1 0 Miro-like protein Radical_SAM PF04055.16 gi|336476626|ref|YP_004615767.1| - 2.1e-19 70.3 0.1 2.4e-19 70.1 0.1 1.0 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336476626|ref|YP_004615767.1| - 1.1e-08 35.1 0.0 1.9e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336476626|ref|YP_004615767.1| - 2.8e-05 24.2 0.1 4.9e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain AIG2 PF06094.7 gi|336476627|ref|YP_004615768.1| - 2.7e-16 59.9 0.0 3.3e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 AIG2-like family DAO PF01266.19 gi|336476628|ref|YP_004615769.1| - 7.3e-12 44.8 3.2 4.2e-06 25.8 0.7 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336476628|ref|YP_004615769.1| - 1.7e-09 37.2 4.6 0.00019 20.6 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.17 gi|336476628|ref|YP_004615769.1| - 3.2e-09 36.1 0.0 5.3e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|336476628|ref|YP_004615769.1| - 4.7e-09 35.8 0.0 8.7e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336476628|ref|YP_004615769.1| - 9.2e-08 32.2 2.3 2.3e-07 30.9 0.6 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336476628|ref|YP_004615769.1| - 2.6e-07 29.4 1.0 3.7e-07 28.9 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|336476628|ref|YP_004615769.1| - 6e-07 28.8 0.9 2.2e-06 26.9 0.6 2.0 1 1 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|336476628|ref|YP_004615769.1| - 6.8e-07 29.2 0.4 1.7e-06 27.9 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336476628|ref|YP_004615769.1| - 8e-06 24.9 1.3 8e-06 24.9 0.9 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|336476628|ref|YP_004615769.1| - 2.7e-05 24.4 0.8 0.0066 16.8 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336476628|ref|YP_004615769.1| - 9.7e-05 21.4 0.4 0.0007 18.6 0.1 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|336476628|ref|YP_004615769.1| - 0.00035 20.7 0.4 0.0013 18.8 0.3 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|336476628|ref|YP_004615769.1| - 0.00064 18.4 0.6 0.11 11.0 0.1 2.3 2 1 0 2 2 2 2 Tryptophan halogenase 3HCDH_N PF02737.13 gi|336476628|ref|YP_004615769.1| - 0.0054 16.4 0.5 0.015 14.9 0.3 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|336476628|ref|YP_004615769.1| - 0.071 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GDI PF00996.13 gi|336476628|ref|YP_004615769.1| - 0.12 10.6 0.0 0.19 10.0 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor DNA_ligase_A_M PF01068.16 gi|336476629|ref|YP_004615770.1| - 7.5e-53 178.9 3.7 2e-50 170.9 1.7 2.2 2 0 0 2 2 2 2 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|336476629|ref|YP_004615770.1| - 7.3e-48 162.7 0.3 1.6e-47 161.6 0.2 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|336476629|ref|YP_004615770.1| - 2.7e-23 82.2 0.0 5.5e-23 81.1 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|336476629|ref|YP_004615770.1| - 1.8e-06 27.5 1.3 7.5e-05 22.3 0.8 2.6 2 1 0 2 2 2 1 DNA ligase OB-like domain ELYS PF13934.1 gi|336476629|ref|YP_004615770.1| - 0.025 14.3 0.0 2 8.1 0.0 2.2 1 1 1 2 2 2 0 Nuclear pore complex assembly Arc_PepC PF06819.6 gi|336476629|ref|YP_004615770.1| - 0.027 14.4 3.6 2 8.3 0.1 3.2 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain LemA PF04011.7 gi|336476629|ref|YP_004615770.1| - 0.08 12.0 1.1 0.13 11.3 0.2 1.7 2 0 0 2 2 2 0 LemA family DNA_pol_B_thumb PF14791.1 gi|336476630|ref|YP_004615771.1| - 2.7e-24 84.6 0.1 1e-23 82.7 0.0 2.1 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|336476630|ref|YP_004615771.1| - 5.4e-17 61.7 6.3 1.7e-15 56.9 0.1 3.5 2 1 1 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|336476630|ref|YP_004615771.1| - 1.2e-16 60.9 0.7 3.7e-16 59.4 0.0 2.1 2 1 0 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|336476630|ref|YP_004615771.1| - 1.2e-11 44.6 2.3 6.8e-10 38.9 0.4 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|336476630|ref|YP_004615771.1| - 0.00018 21.3 2.2 0.72 9.7 0.0 5.0 3 1 3 6 6 6 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|336476630|ref|YP_004615771.1| - 0.0004 20.3 0.1 0.00095 19.2 0.1 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH_3 PF12836.2 gi|336476630|ref|YP_004615771.1| - 0.00048 20.0 0.4 0.19 11.6 0.0 3.6 3 1 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.18 gi|336476630|ref|YP_004615771.1| - 0.018 14.7 1.0 3.2 7.6 0.1 3.8 4 0 0 4 4 4 0 Helix-hairpin-helix motif Ribosomal_S13 PF00416.17 gi|336476630|ref|YP_004615771.1| - 0.042 14.3 2.0 3.9 7.9 0.1 2.9 1 1 1 2 2 2 0 Ribosomal protein S13/S18 Meth_synt_1 PF08267.7 gi|336476630|ref|YP_004615771.1| - 0.047 12.9 0.2 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Cobalamin-independent synthase, N-terminal domain Orn_Arg_deC_N PF02784.11 gi|336476631|ref|YP_004615772.1| - 1.9e-56 191.0 0.0 2.5e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|336476631|ref|YP_004615772.1| - 9.8e-24 83.3 0.0 1.8e-23 82.4 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|336476631|ref|YP_004615772.1| - 2.2e-11 43.7 0.0 4.3e-11 42.7 0.0 1.4 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.8 gi|336476631|ref|YP_004615772.1| - 0.025 13.9 0.0 0.2 10.8 0.0 2.0 1 1 1 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase FKBP_C PF00254.23 gi|336476632|ref|YP_004615773.1| - 4.4e-13 49.0 1.2 1.8e-12 47.1 0.8 2.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Osmo_CC PF08946.5 gi|336476632|ref|YP_004615773.1| - 0.076 13.0 0.3 0.076 13.0 0.2 2.1 2 0 0 2 2 2 0 Osmosensory transporter coiled coil KOW PF00467.24 gi|336476632|ref|YP_004615773.1| - 0.092 12.4 1.7 0.37 10.5 1.2 2.1 1 0 0 1 1 1 0 KOW motif MarC PF01914.12 gi|336476633|ref|YP_004615774.1| - 6.8e-58 195.1 21.4 7.6e-58 194.9 14.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2530 PF10745.4 gi|336476633|ref|YP_004615774.1| - 5 7.1 7.8 1.9 8.5 2.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) RIO1 PF01163.17 gi|336476634|ref|YP_004615775.1| - 5e-46 156.4 0.5 7.7e-46 155.8 0.4 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|336476634|ref|YP_004615775.1| - 1.1e-24 86.2 0.0 2.2e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.20 gi|336476634|ref|YP_004615775.1| - 4.2e-06 26.1 0.2 7.2e-06 25.3 0.1 1.3 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|336476634|ref|YP_004615775.1| - 3.8e-05 23.5 0.1 0.0026 17.5 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|336476634|ref|YP_004615775.1| - 0.0037 16.5 0.1 0.0075 15.5 0.1 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|336476634|ref|YP_004615775.1| - 0.0087 15.1 0.1 0.054 12.5 0.1 2.2 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Tbf5 PF06331.7 gi|336476634|ref|YP_004615775.1| - 0.034 13.9 0.1 0.13 12.0 0.0 2.0 1 0 0 1 1 1 0 Transcription factor TFIIH complex subunit Tfb5 Pkinase_Tyr PF07714.12 gi|336476634|ref|YP_004615775.1| - 0.084 11.9 0.1 0.44 9.5 0.0 2.3 2 1 0 2 2 2 0 Protein tyrosine kinase DUF460 PF04312.8 gi|336476635|ref|YP_004615776.1| - 9.6e-49 164.4 0.1 2.4e-48 163.1 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Atg14 PF10186.4 gi|336476635|ref|YP_004615776.1| - 0.39 9.6 16.5 0.81 8.5 11.4 1.5 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|336476635|ref|YP_004615776.1| - 7.6 5.4 22.7 0.16 10.9 11.1 1.6 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4200 PF13863.1 gi|336476635|ref|YP_004615776.1| - 8.8 6.2 32.4 0.2 11.5 16.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF2148 PF09918.4 gi|336476636|ref|YP_004615777.1| - 6e-35 118.7 2.0 1.1e-34 117.9 1.4 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|336476636|ref|YP_004615777.1| - 0.036 13.6 1.3 0.092 12.3 0.9 1.6 1 0 0 1 1 1 0 Putative Fe-S cluster NTP_transf_3 PF12804.2 gi|336476637|ref|YP_004615778.1| - 3.1e-30 105.3 0.0 3.9e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336476637|ref|YP_004615778.1| - 2.9e-05 23.6 0.0 4.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF354 PF04007.7 gi|336476637|ref|YP_004615778.1| - 0.012 14.4 0.4 0.012 14.4 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF354) Glycos_transf_2 PF00535.21 gi|336476637|ref|YP_004615778.1| - 0.027 14.1 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 DAP3 PF10236.4 gi|336476637|ref|YP_004615778.1| - 0.038 12.9 0.1 0.046 12.6 0.1 1.3 1 1 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 NTP_transferase PF00483.18 gi|336476637|ref|YP_004615778.1| - 0.06 12.6 0.0 0.08 12.2 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Yip1 PF04893.12 gi|336476638|ref|YP_004615779.1| - 0.054 12.9 2.0 0.059 12.8 1.4 1.1 1 0 0 1 1 1 0 Yip1 domain Jiraiya PF15038.1 gi|336476638|ref|YP_004615779.1| - 0.088 12.2 1.0 0.097 12.0 0.7 1.1 1 0 0 1 1 1 0 Jiraiya RDD PF06271.7 gi|336476638|ref|YP_004615779.1| - 0.33 10.8 2.8 0.19 11.5 0.3 1.7 1 1 1 2 2 2 0 RDD family Fer4_5 PF12801.2 gi|336476639|ref|YP_004615780.1| - 3e-10 39.7 13.5 3.6e-08 33.0 3.4 4.1 4 1 1 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476639|ref|YP_004615780.1| - 3.9e-08 33.4 14.6 0.00011 22.4 2.0 3.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336476639|ref|YP_004615780.1| - 2e-06 28.0 16.3 0.0027 18.0 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476639|ref|YP_004615780.1| - 2.4e-06 26.9 20.4 0.00033 20.1 1.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476639|ref|YP_004615780.1| - 7.4e-06 25.9 15.2 0.0032 17.4 3.7 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476639|ref|YP_004615780.1| - 2.5e-05 23.9 16.4 0.0023 17.7 1.1 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476639|ref|YP_004615780.1| - 6.1e-05 22.7 22.6 0.00038 20.2 13.1 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476639|ref|YP_004615780.1| - 0.0003 21.1 22.2 0.0022 18.3 2.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476639|ref|YP_004615780.1| - 0.00039 20.2 18.4 0.0067 16.2 2.8 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476639|ref|YP_004615780.1| - 0.00043 20.0 1.7 0.00043 20.0 1.2 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476639|ref|YP_004615780.1| - 0.0031 17.8 17.8 0.037 14.3 4.3 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476639|ref|YP_004615780.1| - 0.032 14.9 3.5 0.032 14.9 2.5 2.8 3 1 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|336476639|ref|YP_004615780.1| - 0.036 14.3 22.5 0.055 13.8 3.3 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fe_dep_repress PF01325.14 gi|336476640|ref|YP_004615781.1| - 0.00011 22.0 0.1 0.002 18.0 0.0 2.3 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|336476640|ref|YP_004615781.1| - 0.00023 20.7 0.2 0.0011 18.6 0.1 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336476640|ref|YP_004615781.1| - 0.00062 19.3 0.3 0.0013 18.3 0.1 1.6 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|336476640|ref|YP_004615781.1| - 0.0049 16.5 0.0 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|336476640|ref|YP_004615781.1| - 0.0058 16.1 1.4 0.0071 15.8 0.9 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|336476640|ref|YP_004615781.1| - 0.0067 15.7 0.4 0.014 14.7 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336476640|ref|YP_004615781.1| - 0.0076 15.9 0.3 0.035 13.8 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|336476640|ref|YP_004615781.1| - 0.035 14.4 0.0 0.054 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mga PF05043.8 gi|336476640|ref|YP_004615781.1| - 0.038 14.2 0.5 0.067 13.4 0.4 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_36 PF13730.1 gi|336476640|ref|YP_004615781.1| - 0.042 13.9 0.4 3.5 7.8 0.1 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain Trans_reg_C PF00486.23 gi|336476640|ref|YP_004615781.1| - 0.043 13.7 0.2 0.39 10.6 0.0 2.5 2 1 0 2 2 2 0 Transcriptional regulatory protein, C terminal Gp-FAR-1 PF05823.7 gi|336476640|ref|YP_004615781.1| - 0.11 12.4 1.2 0.18 11.7 0.9 1.4 1 1 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HTH_28 PF13518.1 gi|336476640|ref|YP_004615781.1| - 0.13 12.2 0.2 14 5.8 0.0 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain UPF0051 PF01458.12 gi|336476642|ref|YP_004615783.1| - 6.4e-55 186.0 0.3 8.2e-55 185.7 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|336476643|ref|YP_004615784.1| - 3.6e-20 72.6 0.0 5e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476643|ref|YP_004615784.1| - 3e-09 37.2 2.1 0.00025 21.1 0.4 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336476643|ref|YP_004615784.1| - 3.2e-05 23.2 0.6 0.06 12.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|336476643|ref|YP_004615784.1| - 0.0032 17.8 0.2 0.0054 17.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336476643|ref|YP_004615784.1| - 0.02 14.4 0.1 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336476643|ref|YP_004615784.1| - 0.025 13.7 0.1 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TIP49 PF06068.8 gi|336476643|ref|YP_004615784.1| - 0.034 12.8 0.0 0.045 12.4 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus AAA_13 PF13166.1 gi|336476643|ref|YP_004615784.1| - 0.23 9.8 1.0 0.33 9.3 0.7 1.2 1 0 0 1 1 1 0 AAA domain Beta-Casp PF10996.3 gi|336476644|ref|YP_004615785.1| - 5.7e-23 81.2 0.0 1.2e-22 80.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|336476644|ref|YP_004615785.1| - 1.2e-12 47.8 0.0 2e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336476644|ref|YP_004615785.1| - 7.4e-11 42.0 0.7 1.9e-10 40.7 0.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|336476644|ref|YP_004615785.1| - 2.2e-07 30.5 0.2 1.3e-06 28.1 0.0 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|336476644|ref|YP_004615785.1| - 0.00017 21.3 0.0 0.00058 19.6 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Topoisom_bac PF01131.15 gi|336476645|ref|YP_004615786.1| - 8.1e-121 403.6 0.4 8.1e-121 403.6 0.3 1.8 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.17 gi|336476645|ref|YP_004615786.1| - 6.7e-18 64.5 0.4 2.7e-17 62.5 0.2 2.1 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|336476645|ref|YP_004615786.1| - 5.6e-16 57.7 1.8 5.6e-16 57.7 1.3 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|336476645|ref|YP_004615786.1| - 1.3e-05 25.2 3.5 1.5e-05 25.0 0.7 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|336476645|ref|YP_004615786.1| - 3e-05 23.9 0.1 7.8e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|336476645|ref|YP_004615786.1| - 0.02 14.4 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|336476645|ref|YP_004615786.1| - 0.028 14.3 0.2 0.087 12.7 0.1 1.8 2 0 0 2 2 2 0 Pathogenicity locus IMS_HHH PF11798.3 gi|336476645|ref|YP_004615786.1| - 0.041 13.9 0.1 0.099 12.7 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif CoA_binding_2 PF13380.1 gi|336476646|ref|YP_004615787.1| - 0.0038 17.3 0.0 0.0049 17.0 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TnpW PF14202.1 gi|336476646|ref|YP_004615787.1| - 0.041 13.4 0.3 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 Transposon-encoded protein TnpW FNIP_N PF14636.1 gi|336476646|ref|YP_004615787.1| - 0.13 12.6 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Folliculin-interacting protein N-terminus Lysine_decarbox PF03641.9 gi|336476647|ref|YP_004615788.1| - 2e-09 37.3 0.0 3.3e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|336476647|ref|YP_004615788.1| - 1.3e-08 33.9 2.5 1e-05 24.5 1.1 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|336476647|ref|YP_004615788.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase DAGK_cat PF00781.19 gi|336476647|ref|YP_004615788.1| - 0.56 9.6 5.1 3.3 7.1 0.8 2.4 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain DUF367 PF04034.8 gi|336476648|ref|YP_004615789.1| - 1.6e-46 157.0 0.0 2e-46 156.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|336476648|ref|YP_004615789.1| - 1.4e-12 46.9 0.3 2e-12 46.4 0.2 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI ATP_bind_4 PF01902.12 gi|336476649|ref|YP_004615790.1| - 1e-70 237.4 0.1 7.3e-70 234.7 0.0 2.0 2 0 0 2 2 2 1 ATP-binding region Asn_synthase PF00733.16 gi|336476649|ref|YP_004615790.1| - 6.6e-48 163.4 0.0 7.7e-44 150.1 0.0 2.7 2 1 0 2 2 2 2 Asparagine synthase GATase_7 PF13537.1 gi|336476649|ref|YP_004615790.1| - 3.9e-13 49.2 0.1 1.1e-12 47.7 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|336476649|ref|YP_004615790.1| - 4.7e-08 33.0 0.0 3e-06 27.2 0.0 2.8 3 0 0 3 3 3 1 Glutamine amidotransferase domain tRNA_Me_trans PF03054.11 gi|336476649|ref|YP_004615790.1| - 0.0019 16.8 0.0 0.39 9.2 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|336476649|ref|YP_004615790.1| - 0.006 15.5 0.0 0.019 13.8 0.0 1.8 2 0 0 2 2 2 1 NAD synthase GATase_2 PF00310.16 gi|336476649|ref|YP_004615790.1| - 0.0082 14.8 0.1 0.071 11.8 0.0 2.1 1 1 0 2 2 2 1 Glutamine amidotransferases class-II ATP_bind_3 PF01171.15 gi|336476649|ref|YP_004615790.1| - 0.031 13.7 0.0 0.42 10.1 0.0 2.5 3 0 0 3 3 3 0 PP-loop family QueC PF06508.8 gi|336476649|ref|YP_004615790.1| - 0.032 13.5 0.0 6.9 5.8 0.0 2.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|336476649|ref|YP_004615790.1| - 0.046 13.5 0.0 12 5.6 0.0 2.7 2 1 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family PMSR PF01625.16 gi|336476650|ref|YP_004615791.1| - 1.3e-66 223.2 0.8 1.4e-66 223.1 0.6 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase ABC_tran PF00005.22 gi|336476651|ref|YP_004615792.1| - 6.6e-33 113.9 0.0 1e-32 113.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476651|ref|YP_004615792.1| - 1.2e-10 41.8 0.0 0.00032 20.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336476651|ref|YP_004615792.1| - 2.5e-10 39.9 0.1 4.6e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336476651|ref|YP_004615792.1| - 4.5e-05 22.8 0.1 9.4e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336476651|ref|YP_004615792.1| - 6.5e-05 22.9 0.1 0.00018 21.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336476651|ref|YP_004615792.1| - 0.00013 22.0 0.4 0.035 14.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|336476651|ref|YP_004615792.1| - 0.0012 18.2 0.3 0.029 13.7 0.1 2.3 1 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|336476651|ref|YP_004615792.1| - 0.0023 17.7 0.9 0.015 15.1 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336476651|ref|YP_004615792.1| - 0.0029 17.0 0.3 0.029 13.8 0.1 2.0 1 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|336476651|ref|YP_004615792.1| - 0.0034 16.5 0.0 0.0057 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|336476651|ref|YP_004615792.1| - 0.0037 16.9 1.2 0.11 12.2 0.0 2.9 3 1 0 3 3 3 1 Part of AAA domain AAA_15 PF13175.1 gi|336476651|ref|YP_004615792.1| - 0.0048 15.9 0.1 0.12 11.4 0.3 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336476651|ref|YP_004615792.1| - 0.0059 16.9 0.1 0.0099 16.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336476651|ref|YP_004615792.1| - 0.0084 16.4 0.0 0.22 11.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336476651|ref|YP_004615792.1| - 0.014 16.1 0.8 0.036 14.8 0.3 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|336476651|ref|YP_004615792.1| - 0.017 15.0 0.0 0.23 11.4 0.0 2.4 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|336476651|ref|YP_004615792.1| - 0.021 14.5 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|336476651|ref|YP_004615792.1| - 0.022 13.9 0.2 3.8 6.5 0.0 2.3 2 0 0 2 2 2 0 KaiC cobW PF02492.14 gi|336476651|ref|YP_004615792.1| - 0.023 14.1 0.0 0.046 13.1 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|336476651|ref|YP_004615792.1| - 0.034 14.1 0.5 0.22 11.4 0.4 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.10 gi|336476651|ref|YP_004615792.1| - 0.051 12.2 0.0 0.066 11.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Arch_ATPase PF01637.13 gi|336476651|ref|YP_004615792.1| - 0.057 13.0 0.0 0.35 10.5 0.0 2.1 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|336476651|ref|YP_004615792.1| - 0.066 12.8 0.1 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 NACHT domain PIN_4 PF13638.1 gi|336476651|ref|YP_004615792.1| - 0.084 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 PIN domain FtsK_SpoIIIE PF01580.13 gi|336476651|ref|YP_004615792.1| - 0.089 12.2 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_ATPase PF09818.4 gi|336476651|ref|YP_004615792.1| - 0.1 11.1 0.4 2.1 6.8 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RNA_helicase PF00910.17 gi|336476651|ref|YP_004615792.1| - 0.14 12.3 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 RNA helicase PK PF00224.16 gi|336476652|ref|YP_004615793.1| - 4.9e-125 416.7 3.8 6.4e-125 416.3 2.6 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|336476652|ref|YP_004615793.1| - 8.2e-24 83.4 0.0 6.6e-23 80.4 0.0 2.5 4 0 0 4 4 4 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|336476652|ref|YP_004615793.1| - 5e-07 28.8 1.6 1.1e-06 27.6 0.6 1.8 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Metallophos_2 PF12850.2 gi|336476653|ref|YP_004615794.1| - 4.6e-24 85.0 0.1 5.4e-24 84.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336476653|ref|YP_004615794.1| - 3.4e-07 29.8 2.2 6e-05 22.5 1.5 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|336476653|ref|YP_004615794.1| - 9.9e-05 21.6 0.1 0.13 11.3 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily HCBP_related PF06594.6 gi|336476653|ref|YP_004615794.1| - 0.11 12.0 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain Metallophos_2 PF12850.2 gi|336476654|ref|YP_004615795.1| - 3.1e-30 105.0 0.1 4.1e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336476654|ref|YP_004615795.1| - 2.1e-08 33.8 3.7 3.5e-08 33.0 2.6 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Pyr_redox_2 PF07992.9 gi|336476655|ref|YP_004615796.1| - 1.6e-31 109.7 3.5 2e-31 109.4 2.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336476655|ref|YP_004615796.1| - 2.4e-16 60.4 1.0 2.2e-12 47.4 0.0 2.6 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336476655|ref|YP_004615796.1| - 1.2e-13 51.2 13.0 1.2e-12 48.0 1.5 3.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336476655|ref|YP_004615796.1| - 5e-12 45.3 1.4 8.9e-05 21.5 0.2 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336476655|ref|YP_004615796.1| - 2e-07 29.8 4.1 0.0017 16.9 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|336476655|ref|YP_004615796.1| - 2.2e-06 26.8 7.8 1.7e-05 23.8 0.3 3.7 3 1 1 4 4 4 1 FAD binding domain K_oxygenase PF13434.1 gi|336476655|ref|YP_004615796.1| - 2e-05 23.7 0.4 0.0013 17.7 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|336476655|ref|YP_004615796.1| - 5e-05 22.5 0.9 0.00072 18.7 0.2 2.3 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|336476655|ref|YP_004615796.1| - 0.00017 21.5 1.1 0.00032 20.6 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|336476655|ref|YP_004615796.1| - 0.0015 17.6 0.1 0.0015 17.6 0.1 2.7 2 1 1 3 3 3 1 Thi4 family Lycopene_cycl PF05834.7 gi|336476655|ref|YP_004615796.1| - 0.0047 15.9 3.1 1.3 7.9 0.0 2.7 2 1 1 3 3 3 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|336476655|ref|YP_004615796.1| - 0.013 14.5 0.2 0.013 14.5 0.1 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|336476655|ref|YP_004615796.1| - 0.028 13.3 0.5 0.028 13.3 0.3 3.6 3 2 1 4 4 4 0 Glucose inhibited division protein A F420_oxidored PF03807.12 gi|336476655|ref|YP_004615796.1| - 0.072 13.5 0.9 0.25 11.7 0.1 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|336476655|ref|YP_004615796.1| - 0.13 12.4 4.5 0.49 10.6 0.9 2.5 2 2 0 2 2 2 0 Putative NAD(P)-binding Thioredoxin_3 PF13192.1 gi|336476656|ref|YP_004615797.1| - 2e-11 43.5 0.0 2.3e-11 43.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.15 gi|336476656|ref|YP_004615797.1| - 1.2e-05 24.9 0.0 1.2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|336476656|ref|YP_004615797.1| - 2.5e-05 24.1 0.0 3.2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|336476656|ref|YP_004615797.1| - 0.00068 19.8 0.0 0.00075 19.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|336476656|ref|YP_004615797.1| - 0.024 14.2 0.0 0.032 13.7 0.0 1.3 1 1 0 1 1 1 0 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|336476656|ref|YP_004615797.1| - 0.029 14.5 0.1 0.056 13.6 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain GST_N PF02798.15 gi|336476656|ref|YP_004615797.1| - 0.044 13.9 0.0 0.078 13.1 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_8 PF13905.1 gi|336476656|ref|YP_004615797.1| - 0.1 12.7 0.1 4.7 7.4 0.0 2.4 1 1 2 3 3 3 0 Thioredoxin-like TraF PF13728.1 gi|336476656|ref|YP_004615797.1| - 0.11 11.9 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein DUF2088 PF09861.4 gi|336476657|ref|YP_004615798.1| - 1.2e-71 239.9 0.3 3.3e-71 238.5 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|336476657|ref|YP_004615798.1| - 0.027 13.9 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) Peptidase_U32 PF01136.14 gi|336476658|ref|YP_004615799.1| - 1e-76 256.9 0.0 1.4e-76 256.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 DUF4390 PF14334.1 gi|336476658|ref|YP_004615799.1| - 0.029 13.5 0.0 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4390) DUF494 PF04361.8 gi|336476659|ref|YP_004615800.1| - 0.0017 18.0 0.8 1.7 8.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF494) TetR_C_5 PF08360.6 gi|336476659|ref|YP_004615800.1| - 0.022 14.6 0.3 18 5.3 0.0 3.5 3 1 1 4 4 4 0 QacR-like protein, C-terminal region DUF2959 PF11172.3 gi|336476659|ref|YP_004615800.1| - 0.037 13.8 0.9 17 5.1 0.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2959) Spc7 PF08317.6 gi|336476659|ref|YP_004615800.1| - 0.12 11.0 4.8 0.16 10.6 0.3 2.4 2 1 0 2 2 2 0 Spc7 kinetochore protein Flagellin_N PF00669.15 gi|336476659|ref|YP_004615800.1| - 0.13 12.0 6.8 1 9.1 0.1 3.4 3 1 0 3 3 3 0 Bacterial flagellin N-terminal helical region Cauli_AT PF03233.8 gi|336476659|ref|YP_004615800.1| - 0.21 11.2 3.7 7.6 6.2 0.0 3.7 2 2 1 3 3 3 0 Aphid transmission protein LXG PF04740.7 gi|336476659|ref|YP_004615800.1| - 0.26 11.0 11.4 11 5.7 0.2 3.7 3 1 1 4 4 4 0 LXG domain of WXG superfamily UPF0118 PF01594.11 gi|336476659|ref|YP_004615800.1| - 0.38 9.7 1.8 16 4.3 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function DUF20 Prominin PF05478.6 gi|336476659|ref|YP_004615800.1| - 0.42 8.0 3.6 3.6 5.0 0.3 2.7 2 1 0 3 3 3 0 Prominin DUF1664 PF07889.7 gi|336476659|ref|YP_004615800.1| - 0.58 9.9 10.5 16 5.3 0.3 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) HisKA_3 PF07730.8 gi|336476659|ref|YP_004615800.1| - 0.66 10.3 6.3 33 4.9 0.1 3.7 3 1 1 4 4 4 0 Histidine kinase H-kinase_dim PF02895.9 gi|336476659|ref|YP_004615800.1| - 1.9 8.8 8.3 9.9 6.5 1.1 3.4 3 1 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain FlgN PF05130.7 gi|336476659|ref|YP_004615800.1| - 4 7.6 7.9 18 5.5 0.7 3.3 3 1 0 3 3 3 0 FlgN protein SF-assemblin PF06705.6 gi|336476659|ref|YP_004615800.1| - 5.9 5.9 10.2 4.4 6.3 0.6 3.0 3 0 0 3 3 3 0 SF-assemblin/beta giardin SSF PF00474.12 gi|336476660|ref|YP_004615801.1| - 6.5e-58 196.2 38.7 1.1e-57 195.5 26.8 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2611 PF11022.3 gi|336476660|ref|YP_004615801.1| - 5.7 7.1 6.6 0.93 9.6 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2611) Radical_SAM PF04055.16 gi|336476661|ref|YP_004615802.1| - 2.3e-21 76.6 0.0 1.6e-20 73.9 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336476661|ref|YP_004615802.1| - 2e-12 47.4 0.0 4.9e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336476661|ref|YP_004615802.1| - 1.3e-09 38.1 0.0 3.2e-09 36.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|336476661|ref|YP_004615802.1| - 0.0092 15.2 0.0 0.051 12.8 0.0 2.2 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|336476661|ref|YP_004615802.1| - 0.054 12.5 0.0 0.092 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase 97 Desulfoferrodox PF01880.13 gi|336476662|ref|YP_004615803.1| - 4.7e-25 87.6 1.5 5.8e-25 87.3 1.1 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Gag_MA PF01140.14 gi|336476662|ref|YP_004615803.1| - 0.14 11.9 0.7 4.9 7.0 0.0 2.1 1 1 0 2 2 2 0 Matrix protein (MA), p15 TrkA_C PF02080.16 gi|336476663|ref|YP_004615804.1| - 3.5e-12 45.7 0.0 8.5e-12 44.5 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain tRNA-synt_1 PF00133.17 gi|336476664|ref|YP_004615805.1| - 9e-133 443.3 4.1 7.5e-132 440.3 2.9 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|336476664|ref|YP_004615805.1| - 2.4e-38 131.3 0.1 4.4e-38 130.4 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|336476664|ref|YP_004615805.1| - 8.7e-25 87.1 1.3 2.7e-14 52.6 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|336476664|ref|YP_004615805.1| - 0.00011 21.4 0.0 0.087 11.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|336476664|ref|YP_004615805.1| - 0.0004 19.7 0.1 0.0019 17.5 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|336476664|ref|YP_004615805.1| - 0.0038 15.9 0.0 0.14 10.8 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|336476664|ref|YP_004615805.1| - 0.064 12.0 0.0 3.7 6.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (R) DrsE PF02635.10 gi|336476665|ref|YP_004615806.1| - 4.2e-11 42.9 0.0 5e-11 42.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|336476665|ref|YP_004615806.1| - 9.6e-07 28.6 0.0 1e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family HMG-CoA_red PF00368.13 gi|336476666|ref|YP_004615807.1| - 1e-142 475.2 1.8 1.2e-142 475.0 1.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DASH_Dam1 PF08653.5 gi|336476667|ref|YP_004615808.1| - 0.075 12.8 0.2 0.51 10.1 0.0 2.3 2 0 0 2 2 2 0 DASH complex subunit Dam1 HemeBinding_Shp PF11545.3 gi|336476667|ref|YP_004615808.1| - 0.1 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Cell surface heme-binding protein Shp FH2 PF02181.18 gi|336476668|ref|YP_004615809.1| - 0.016 14.0 0.2 0.017 14.0 0.2 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain DUF2413 PF10310.4 gi|336476668|ref|YP_004615809.1| - 0.029 13.1 0.4 0.029 13.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) DUF2407_C PF13373.1 gi|336476668|ref|YP_004615809.1| - 0.048 13.5 1.3 0.048 13.5 0.9 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain EcoR124_C PF12008.3 gi|336476668|ref|YP_004615809.1| - 0.077 12.1 1.4 0.083 12.0 1.0 1.1 1 0 0 1 1 1 0 Type I restriction and modification enzyme - subunit R C terminal GRAS PF03514.9 gi|336476668|ref|YP_004615809.1| - 0.095 11.4 0.8 0.097 11.3 0.6 1.0 1 0 0 1 1 1 0 GRAS domain family Aconitase PF00330.15 gi|336476669|ref|YP_004615810.1| - 2.9e-89 299.6 6.0 3.2e-62 210.5 0.5 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|336476669|ref|YP_004615810.1| - 0.0033 16.0 0.0 0.005 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CCG PF02754.11 gi|336476670|ref|YP_004615811.1| - 4.1e-18 65.1 1.9 1.6e-09 37.5 0.0 2.8 2 1 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|336476671|ref|YP_004615812.1| - 1.3e-10 41.1 7.0 2e-10 40.5 4.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476671|ref|YP_004615812.1| - 5.1e-09 36.3 7.8 8.3e-09 35.6 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476671|ref|YP_004615812.1| - 7.5e-07 28.8 7.4 1.3e-06 28.0 5.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476671|ref|YP_004615812.1| - 1.1e-06 28.7 9.1 2.1e-06 27.8 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336476671|ref|YP_004615812.1| - 9e-06 25.9 8.5 1.5e-05 25.3 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476671|ref|YP_004615812.1| - 0.00016 21.7 2.7 0.00016 21.7 1.8 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336476671|ref|YP_004615812.1| - 0.00016 21.3 11.7 0.00048 19.8 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336476671|ref|YP_004615812.1| - 0.00074 19.8 5.8 0.029 14.7 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476671|ref|YP_004615812.1| - 0.0011 18.4 12.8 0.0035 16.8 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336476671|ref|YP_004615812.1| - 0.004 16.9 9.5 0.01 15.6 6.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476671|ref|YP_004615812.1| - 0.006 16.4 2.3 0.006 16.4 1.6 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336476671|ref|YP_004615812.1| - 0.039 14.3 0.5 0.039 14.3 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|336476671|ref|YP_004615812.1| - 0.057 14.1 11.6 0.26 12.0 8.0 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|336476671|ref|YP_004615812.1| - 0.2 12.2 0.5 0.2 12.2 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|336476671|ref|YP_004615812.1| - 2.2 7.9 8.4 5.9 6.5 1.2 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FlpD PF02662.11 gi|336476672|ref|YP_004615813.1| - 2.8e-13 49.6 0.1 1.5e-10 40.8 0.0 3.5 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|336476672|ref|YP_004615813.1| - 6.9e-11 41.2 33.4 0.00019 20.8 2.3 5.4 4 1 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|336476672|ref|YP_004615813.1| - 1.8e-10 41.0 0.0 8.3e-09 35.6 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|336476672|ref|YP_004615813.1| - 3.2e-10 40.2 32.4 0.00041 20.6 7.4 5.1 5 1 1 6 6 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476672|ref|YP_004615813.1| - 6.6e-10 38.6 28.1 0.0007 19.3 7.0 4.3 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476672|ref|YP_004615813.1| - 7.5e-09 36.2 22.1 0.015 16.0 0.2 5.7 5 0 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|336476672|ref|YP_004615813.1| - 1.3e-08 34.3 31.5 0.0067 16.2 1.8 5.3 4 0 0 4 4 4 3 4Fe-4S binding domain FAD_oxidored PF12831.2 gi|336476672|ref|YP_004615813.1| - 1.6e-07 30.8 0.6 2.9e-07 29.9 0.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336476672|ref|YP_004615813.1| - 3.3e-07 30.2 0.3 1.3e-06 28.3 0.1 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|336476672|ref|YP_004615813.1| - 3.8e-07 29.3 0.0 1.6e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336476672|ref|YP_004615813.1| - 6.2e-07 28.6 1.4 1e-06 27.8 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|336476672|ref|YP_004615813.1| - 2.2e-06 27.5 29.4 0.00014 21.7 1.1 4.8 5 1 1 6 6 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476672|ref|YP_004615813.1| - 4.4e-06 26.3 37.8 7.4e-05 22.4 5.9 4.5 4 1 1 5 5 4 2 4Fe-4S dicluster domain Thi4 PF01946.12 gi|336476672|ref|YP_004615813.1| - 5e-06 25.7 0.0 1e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|336476672|ref|YP_004615813.1| - 6.2e-06 26.4 0.1 1.8e-05 24.9 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.1 gi|336476672|ref|YP_004615813.1| - 1.3e-05 25.3 39.3 0.00095 19.3 7.9 4.9 6 0 0 6 6 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476672|ref|YP_004615813.1| - 2.1e-05 24.1 31.7 0.012 15.4 2.2 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain GIDA PF01134.17 gi|336476672|ref|YP_004615813.1| - 0.0003 19.7 1.8 0.0003 19.7 1.2 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|336476672|ref|YP_004615813.1| - 0.00054 19.1 0.4 0.0009 18.3 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|336476672|ref|YP_004615813.1| - 0.0014 17.2 2.5 0.0029 16.1 1.7 1.6 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.19 gi|336476672|ref|YP_004615813.1| - 0.0087 15.1 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|336476672|ref|YP_004615813.1| - 0.0089 16.4 3.7 0.072 13.4 0.7 3.3 4 0 0 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.1 gi|336476672|ref|YP_004615813.1| - 0.015 15.6 1.8 0.015 15.6 1.2 4.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476672|ref|YP_004615813.1| - 0.028 14.7 0.2 0.028 14.7 0.1 5.4 5 1 2 7 7 6 0 4Fe-4S dicluster domain DUF538 PF04398.7 gi|336476672|ref|YP_004615813.1| - 0.036 14.3 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF538 3HCDH_N PF02737.13 gi|336476672|ref|YP_004615813.1| - 0.12 12.0 0.1 0.54 9.8 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_15 PF13459.1 gi|336476672|ref|YP_004615813.1| - 2.2 8.9 23.8 1.1 9.8 1.9 4.4 4 1 0 4 4 3 0 4Fe-4S single cluster domain TrmB PF01978.14 gi|336476673|ref|YP_004615814.1| - 0.0041 16.7 0.3 0.0041 16.7 0.2 1.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|336476673|ref|YP_004615814.1| - 0.039 13.6 0.0 0.14 11.8 0.0 1.9 1 1 1 2 2 2 0 MarR family DUF327 PF03885.8 gi|336476673|ref|YP_004615814.1| - 0.042 13.6 0.4 0.057 13.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF327) DUF387 PF04079.11 gi|336476673|ref|YP_004615814.1| - 0.068 12.5 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Peptidase_M42 PF05343.9 gi|336476673|ref|YP_004615814.1| - 0.13 11.0 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase HTH_27 PF13463.1 gi|336476673|ref|YP_004615814.1| - 0.13 12.5 0.1 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HMG_box_2 PF09011.5 gi|336476674|ref|YP_004615815.1| - 0.032 14.5 3.6 0.037 14.3 2.5 1.1 1 0 0 1 1 1 0 HMG-box domain HMG_box PF00505.14 gi|336476674|ref|YP_004615815.1| - 0.26 11.6 2.4 0.28 11.4 1.7 1.1 1 0 0 1 1 1 0 HMG (high mobility group) box CelD_N PF02927.9 gi|336476675|ref|YP_004615816.1| - 0.14 12.4 0.0 0.15 12.3 0.0 1.0 1 0 0 1 1 1 0 N-terminal ig-like domain of cellulase Toxin_R_bind_C PF07951.7 gi|336476676|ref|YP_004615817.1| - 0.078 12.6 0.5 0.29 10.7 0.3 1.8 1 1 0 1 1 1 0 Clostridium neurotoxin, C-terminal receptor binding Ribonucleas_3_3 PF14622.1 gi|336476677|ref|YP_004615818.1| - 3.5e-20 72.2 0.1 4e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|336476677|ref|YP_004615818.1| - 1.6e-09 38.1 0.0 3e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease III domain N6_Mtase PF02384.11 gi|336476678|ref|YP_004615819.1| - 2.4e-66 223.9 0.0 3.2e-66 223.5 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|336476678|ref|YP_004615819.1| - 8e-16 58.7 1.9 5e-15 56.1 0.1 2.9 2 1 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|336476678|ref|YP_004615819.1| - 2.3e-11 43.7 0.0 4.7e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336476678|ref|YP_004615819.1| - 4.7e-06 26.3 0.0 1e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|336476678|ref|YP_004615819.1| - 0.00085 19.6 0.0 0.0067 16.7 0.0 2.3 2 0 0 2 2 2 1 Eco57I restriction-modification methylase DUF434 PF04256.7 gi|336476678|ref|YP_004615819.1| - 0.099 12.0 0.0 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF434) HTH_23 PF13384.1 gi|336476679|ref|YP_004615820.1| - 4.1e-06 26.2 0.9 1.4e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336476679|ref|YP_004615820.1| - 0.0046 16.9 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|336476679|ref|YP_004615820.1| - 0.083 12.6 0.2 0.2 11.4 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase YfdX PF10938.3 gi|336476679|ref|YP_004615820.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 YfdX protein Crp PF00325.15 gi|336476679|ref|YP_004615820.1| - 0.13 11.7 0.5 0.23 10.9 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Pox_D5 PF03288.11 gi|336476680|ref|YP_004615821.1| - 3.3e-12 46.4 0.9 1.1e-11 44.8 0.1 2.3 2 0 0 2 2 2 1 Poxvirus D5 protein-like Prim-Pol PF09250.6 gi|336476680|ref|YP_004615821.1| - 4.9e-12 46.1 0.0 8.8e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal D5_N PF08706.6 gi|336476680|ref|YP_004615821.1| - 1.3e-11 44.7 0.8 2.6e-11 43.8 0.1 1.9 2 0 0 2 2 2 1 D5 N terminal like RFX_DNA_binding PF02257.10 gi|336476680|ref|YP_004615821.1| - 3.2e-05 23.9 0.1 6.9e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 RFX DNA-binding domain DUF262 PF03235.9 gi|336476684|ref|YP_004615825.1| - 3.5e-33 115.4 2.2 3.5e-33 115.4 1.5 2.8 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|336476684|ref|YP_004615825.1| - 7.5e-11 42.0 0.8 7.5e-11 42.0 0.6 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1524) RNA_pol_Rpb5_N PF03871.9 gi|336476684|ref|YP_004615825.1| - 1.7 9.1 5.0 28 5.2 0.0 3.8 4 0 0 4 4 4 0 RNA polymerase Rpb5, N-terminal domain Mrr_cat PF04471.7 gi|336476685|ref|YP_004615826.1| - 6.2e-06 25.9 0.0 4.8e-05 23.1 0.0 2.3 2 1 0 2 2 2 1 Restriction endonuclease Phage_integrase PF00589.17 gi|336476686|ref|YP_004615827.1| - 1.4e-21 76.9 0.0 4.7e-21 75.2 0.0 2.0 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|336476686|ref|YP_004615827.1| - 4e-07 30.2 0.0 9.8e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|336476686|ref|YP_004615827.1| - 5.2e-06 26.5 0.0 0.00012 22.1 0.0 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.1 gi|336476686|ref|YP_004615827.1| - 0.00031 20.1 3.0 0.00062 19.1 2.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336476686|ref|YP_004615827.1| - 0.0028 16.7 2.5 0.0054 15.8 1.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336476686|ref|YP_004615827.1| - 0.0039 16.9 1.2 0.0083 15.9 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-AD PF07776.10 gi|336476686|ref|YP_004615827.1| - 0.047 13.6 0.4 0.1 12.5 0.3 1.6 1 0 0 1 1 1 0 Zinc-finger associated domain (zf-AD) zf-FPG_IleRS PF06827.9 gi|336476686|ref|YP_004615827.1| - 0.13 11.8 1.0 0.29 10.8 0.7 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS tRNA_anti-codon PF01336.20 gi|336476687|ref|YP_004615828.1| - 0.0028 17.4 0.2 0.0042 16.9 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain NTP_transferase PF00483.18 gi|336476688|ref|YP_004615829.1| - 4.2e-48 163.8 0.0 5.5e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|336476688|ref|YP_004615829.1| - 1.1e-18 65.8 26.4 1.4e-07 30.7 0.5 5.7 2 1 4 6 6 6 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|336476688|ref|YP_004615829.1| - 1.8e-09 37.8 0.0 2.4e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|336476688|ref|YP_004615829.1| - 7e-08 31.8 28.9 1.2e-05 24.7 1.6 5.5 4 2 1 5 5 5 3 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.21 gi|336476688|ref|YP_004615829.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Fucokinase PF07959.7 gi|336476688|ref|YP_004615829.1| - 0.063 11.8 2.5 0.72 8.3 0.1 2.5 1 1 0 2 2 2 0 L-fucokinase UPF0104 PF03706.8 gi|336476689|ref|YP_004615830.1| - 6e-47 160.3 28.8 7.9e-47 159.9 20.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DPM3 PF08285.6 gi|336476689|ref|YP_004615830.1| - 0.02 14.7 1.6 0.02 14.7 1.1 3.2 3 1 0 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) HTH_38 PF13936.1 gi|336476689|ref|YP_004615830.1| - 0.022 14.2 0.2 0.048 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|336476690|ref|YP_004615831.1| - 4.6e-18 65.9 0.1 1.7e-17 64.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|336476690|ref|YP_004615831.1| - 0.00096 18.7 0.0 0.061 13.0 0.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|336476690|ref|YP_004615831.1| - 0.002 18.0 0.0 0.0053 16.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|336476690|ref|YP_004615831.1| - 0.0074 16.1 0.3 0.042 13.6 0.0 2.2 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) ILVD_EDD PF00920.16 gi|336476691|ref|YP_004615832.1| - 2.8e-213 709.0 0.3 3.2e-213 708.8 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family Fer4 PF00037.22 gi|336476692|ref|YP_004615833.1| - 7.7e-13 47.4 38.7 0.00016 21.1 1.9 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476692|ref|YP_004615833.1| - 8.8e-10 38.8 32.5 0.0025 18.1 10.5 3.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476692|ref|YP_004615833.1| - 4.6e-09 36.0 31.2 0.00079 19.2 9.9 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|336476692|ref|YP_004615833.1| - 5.2e-09 35.8 20.0 1.3e-08 34.5 10.1 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476692|ref|YP_004615833.1| - 2.9e-08 33.8 33.4 0.0007 19.8 9.0 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476692|ref|YP_004615833.1| - 3.2e-08 33.2 33.2 0.0035 17.0 10.0 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476692|ref|YP_004615833.1| - 6.3e-08 32.1 40.6 0.00057 19.6 1.6 5.0 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476692|ref|YP_004615833.1| - 2.9e-07 31.1 29.1 0.036 14.8 1.3 4.5 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|336476692|ref|YP_004615833.1| - 5.1e-07 29.2 41.1 0.00011 21.8 1.6 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336476692|ref|YP_004615833.1| - 6.2e-06 26.1 40.9 0.0035 17.5 1.0 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476692|ref|YP_004615833.1| - 2.4e-05 24.2 30.9 0.023 14.7 8.6 3.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476692|ref|YP_004615833.1| - 0.0039 17.5 33.9 0.19 12.0 0.8 4.4 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476692|ref|YP_004615833.1| - 0.05 13.9 0.3 0.05 13.9 0.2 4.5 3 2 1 4 4 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336476692|ref|YP_004615833.1| - 0.11 13.0 31.5 0.2 12.2 1.5 4.7 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336476692|ref|YP_004615833.1| - 2.2 9.0 45.2 0.32 11.6 4.4 4.6 4 1 0 4 4 4 0 4Fe-4S binding domain AFOR_C PF01314.13 gi|336476693|ref|YP_004615834.1| - 3.4e-67 226.7 0.0 4.1e-67 226.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|336476693|ref|YP_004615834.1| - 3e-61 206.2 0.0 5.3e-61 205.5 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Laminin_II PF06009.7 gi|336476694|ref|YP_004615835.1| - 0.0044 16.7 1.5 0.0044 16.7 1.0 3.3 4 0 0 4 4 4 1 Laminin Domain II Syntaxin PF00804.20 gi|336476694|ref|YP_004615835.1| - 0.01 15.9 4.1 0.01 15.9 2.8 2.7 3 0 0 3 3 3 0 Syntaxin Reo_sigmaC PF04582.7 gi|336476694|ref|YP_004615835.1| - 0.018 14.2 0.1 0.026 13.7 0.1 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein FlaC_arch PF05377.6 gi|336476694|ref|YP_004615835.1| - 0.059 13.2 4.9 0.62 9.9 0.1 3.5 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Noelin-1 PF12308.3 gi|336476694|ref|YP_004615835.1| - 0.066 13.0 0.2 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Neurogenesis glycoprotein YvrJ PF12841.2 gi|336476694|ref|YP_004615835.1| - 0.14 11.4 0.2 1.4 8.2 0.0 2.7 2 0 0 2 2 2 0 YvrJ protein family NPV_P10 PF05531.7 gi|336476694|ref|YP_004615835.1| - 0.37 11.0 6.1 0.15 12.3 0.5 3.1 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein TBPIP PF07106.8 gi|336476694|ref|YP_004615835.1| - 0.52 9.8 18.1 0.12 11.9 2.2 3.3 3 0 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) BLOC1_2 PF10046.4 gi|336476694|ref|YP_004615835.1| - 0.69 10.0 8.3 0.18 11.9 0.5 3.3 3 1 1 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DMPK_coil PF08826.5 gi|336476694|ref|YP_004615835.1| - 0.83 9.5 5.1 3.5 7.5 0.4 2.7 2 0 0 2 2 2 0 DMPK coiled coil domain like V_ATPase_I PF01496.14 gi|336476694|ref|YP_004615835.1| - 1.4 6.6 7.4 1.8 6.3 4.9 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4200 PF13863.1 gi|336476694|ref|YP_004615835.1| - 2.1 8.3 9.4 0.13 12.1 0.7 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) IncA PF04156.9 gi|336476694|ref|YP_004615835.1| - 2.3 7.7 8.9 0.16 11.5 2.0 1.9 2 0 0 2 2 2 0 IncA protein DUF1664 PF07889.7 gi|336476694|ref|YP_004615835.1| - 2.3 8.0 9.5 0.12 12.1 0.8 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) Baculo_p24 PF05073.7 gi|336476694|ref|YP_004615835.1| - 9.3 5.7 11.8 0.091 12.3 0.8 2.4 1 1 1 2 2 2 0 Baculovirus P24 capsid protein MtrH PF02007.13 gi|336476695|ref|YP_004615836.1| - 1.1e-132 441.4 0.1 1.3e-132 441.3 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrA PF04208.9 gi|336476696|ref|YP_004615837.1| - 3.5e-62 208.9 0.7 4.4e-62 208.6 0.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A PTA_PTB PF01515.14 gi|336476697|ref|YP_004615838.1| - 0.0011 18.1 0.1 0.25 10.3 0.0 2.3 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase Rad17 PF03215.10 gi|336476698|ref|YP_004615839.1| - 2.4e-13 49.6 0.1 1.9e-05 23.5 0.0 2.3 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|336476698|ref|YP_004615839.1| - 6.1e-10 39.4 0.0 1.3e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336476698|ref|YP_004615839.1| - 2.3e-06 27.7 0.2 0.012 15.7 0.0 2.8 2 1 1 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|336476698|ref|YP_004615839.1| - 0.00021 20.4 0.1 0.001 18.1 0.0 2.1 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|336476698|ref|YP_004615839.1| - 0.001 18.2 0.0 0.002 17.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DEAD PF00270.24 gi|336476698|ref|YP_004615839.1| - 0.0012 18.3 0.0 0.27 10.7 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|336476698|ref|YP_004615839.1| - 0.0015 19.3 0.1 0.007 17.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|336476698|ref|YP_004615839.1| - 0.0038 17.1 0.0 0.0086 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336476698|ref|YP_004615839.1| - 0.0045 16.9 0.1 0.086 12.8 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain NACHT PF05729.7 gi|336476698|ref|YP_004615839.1| - 0.01 15.4 0.0 0.22 11.1 0.0 2.3 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.12 gi|336476698|ref|YP_004615839.1| - 0.021 14.2 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF374 PF04028.8 gi|336476698|ref|YP_004615839.1| - 0.043 13.0 0.2 0.14 11.3 0.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF374) RNA_helicase PF00910.17 gi|336476698|ref|YP_004615839.1| - 0.045 13.9 0.0 0.23 11.6 0.0 2.2 1 1 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|336476698|ref|YP_004615839.1| - 0.06 12.2 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|336476698|ref|YP_004615839.1| - 0.06 12.7 0.3 2.4 7.5 0.0 2.8 2 1 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|336476698|ref|YP_004615839.1| - 0.066 12.7 0.7 0.18 11.3 0.5 1.8 1 1 0 1 1 1 0 AAA domain QRPTase_N PF02749.11 gi|336476698|ref|YP_004615839.1| - 0.13 12.0 0.0 0.4 10.5 0.0 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain Topo-VIb_trans PF09239.6 gi|336476699|ref|YP_004615840.1| - 5.4e-69 230.8 0.0 8.8e-69 230.1 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|336476699|ref|YP_004615840.1| - 1.2e-13 50.6 0.0 6.3e-13 48.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|336476699|ref|YP_004615840.1| - 4.6e-10 39.2 0.0 9.7e-10 38.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|336476699|ref|YP_004615840.1| - 0.0031 16.1 0.8 0.0061 15.1 0.0 1.8 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.1 gi|336476699|ref|YP_004615840.1| - 0.038 13.6 0.0 0.098 12.3 0.0 1.6 1 0 0 1 1 1 0 GHKL domain HATPase_c_2 PF13581.1 gi|336476699|ref|YP_004615840.1| - 0.04 13.7 0.1 1.5 8.5 0.0 2.9 2 1 1 3 3 3 0 Histidine kinase-like ATPase domain TP6A_N PF04406.9 gi|336476700|ref|YP_004615841.1| - 1.5e-19 69.4 0.1 2.6e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Radical_SAM PF04055.16 gi|336476701|ref|YP_004615842.1| - 4.2e-20 72.5 0.0 1.2e-19 71.1 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336476701|ref|YP_004615842.1| - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|336476701|ref|YP_004615842.1| - 0.00093 18.9 0.2 0.00093 18.9 0.1 2.8 3 0 0 3 3 3 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336476701|ref|YP_004615842.1| - 0.0018 17.4 2.3 0.0018 17.4 1.6 2.4 2 1 1 3 3 3 2 zinc-ribbon domain UPF0547 PF10571.4 gi|336476701|ref|YP_004615842.1| - 0.0091 15.6 2.4 0.046 13.4 0.0 3.1 3 1 0 3 3 3 1 Uncharacterised protein family UPF0547 Fer4_14 PF13394.1 gi|336476701|ref|YP_004615842.1| - 0.021 14.8 0.7 0.06 13.3 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain RNA_POL_M_15KD PF02150.11 gi|336476701|ref|YP_004615842.1| - 0.037 13.7 1.5 0.037 13.7 1.1 3.3 3 1 0 3 3 2 0 RNA polymerases M/15 Kd subunit Mu-like_Com PF10122.4 gi|336476701|ref|YP_004615842.1| - 0.055 12.5 3.9 2.5 7.2 0.1 2.7 2 1 0 2 2 2 0 Mu-like prophage protein Com YhfH PF14149.1 gi|336476701|ref|YP_004615842.1| - 0.064 13.0 4.3 2.7 7.8 0.1 3.4 3 0 0 3 3 3 0 YhfH-like protein zinc_ribbon_2 PF13240.1 gi|336476701|ref|YP_004615842.1| - 0.15 11.6 10.3 0.29 10.6 0.3 3.4 3 0 0 3 3 3 0 zinc-ribbon domain GFA PF04828.9 gi|336476701|ref|YP_004615842.1| - 0.39 10.6 0.0 0.39 10.6 0.0 3.5 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme DUF1272 PF06906.6 gi|336476701|ref|YP_004615842.1| - 4.1 7.3 7.8 4.1 7.3 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) zf-dskA_traR PF01258.12 gi|336476701|ref|YP_004615842.1| - 4.3 7.1 5.6 15 5.4 0.0 3.1 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Hist_deacetyl PF00850.14 gi|336476702|ref|YP_004615843.1| - 2.3e-86 289.9 0.0 2.7e-86 289.6 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain PfkB PF00294.19 gi|336476703|ref|YP_004615844.1| - 6.7e-50 169.9 0.0 8.3e-50 169.6 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF555 PF04475.7 gi|336476704|ref|YP_004615845.1| - 6e-51 170.6 0.1 6.8e-51 170.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|336476704|ref|YP_004615845.1| - 0.042 13.3 0.1 0.062 12.8 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.7 gi|336476704|ref|YP_004615845.1| - 0.045 13.7 0.4 0.14 12.2 0.0 2.0 3 0 0 3 3 3 0 Dodecin zf-ribbon_3 PF13248.1 gi|336476704|ref|YP_004615845.1| - 0.09 12.0 0.2 0.16 11.1 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF357 PF04010.8 gi|336476705|ref|YP_004615846.1| - 3.7e-30 103.4 0.4 4.5e-30 103.1 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.12 gi|336476706|ref|YP_004615847.1| - 1.2e-40 139.8 0.7 1.9e-40 139.0 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|336476706|ref|YP_004615847.1| - 1.5e-22 80.3 0.0 3.9e-22 79.0 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|336476706|ref|YP_004615847.1| - 2e-08 34.0 0.1 6.4e-08 32.3 0.1 1.9 1 0 0 1 1 1 1 HAS barrel domain FtsK_SpoIIIE PF01580.13 gi|336476706|ref|YP_004615847.1| - 6.7e-05 22.4 0.1 0.013 15.0 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family Zot PF05707.7 gi|336476706|ref|YP_004615847.1| - 0.00016 21.1 0.0 0.0017 17.8 0.0 2.3 3 0 0 3 3 3 1 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|336476706|ref|YP_004615847.1| - 0.00023 19.6 0.0 0.23 9.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|336476706|ref|YP_004615847.1| - 0.0014 17.3 0.0 0.036 12.6 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|336476706|ref|YP_004615847.1| - 0.0067 15.9 0.0 0.5 9.8 0.0 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase TraG-D_C PF12696.2 gi|336476706|ref|YP_004615847.1| - 0.012 15.4 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG T2SE PF00437.15 gi|336476706|ref|YP_004615847.1| - 0.038 12.8 0.0 0.076 11.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein T4SS-DNA_transf PF02534.9 gi|336476706|ref|YP_004615847.1| - 0.061 11.8 0.1 0.17 10.4 0.1 1.6 1 1 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.1 gi|336476706|ref|YP_004615847.1| - 0.098 12.8 0.0 10 6.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain TP_methylase PF00590.15 gi|336476707|ref|YP_004615848.1| - 5.9e-17 62.0 0.0 7.9e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cpn60_TCP1 PF00118.19 gi|336476708|ref|YP_004615849.1| - 1.5e-159 531.6 13.5 1.8e-159 531.4 9.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family S4 PF01479.20 gi|336476709|ref|YP_004615850.1| - 2.3e-14 52.5 0.1 5.7e-14 51.2 0.0 1.7 1 0 0 1 1 1 1 S4 domain Methyltransf_18 PF12847.2 gi|336476709|ref|YP_004615850.1| - 1.6e-07 31.8 0.0 3e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|336476709|ref|YP_004615850.1| - 9.5e-07 28.9 0.0 1.5e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|336476709|ref|YP_004615850.1| - 2.2e-06 27.3 0.0 4.3e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|336476709|ref|YP_004615850.1| - 2.4e-05 23.3 0.0 3.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_26 PF13659.1 gi|336476709|ref|YP_004615850.1| - 0.00034 20.6 0.0 0.00082 19.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|336476709|ref|YP_004615850.1| - 0.0015 18.0 0.1 0.0028 17.1 0.1 1.4 1 0 0 1 1 1 1 S4 domain Methyltransf_23 PF13489.1 gi|336476709|ref|YP_004615850.1| - 0.0018 18.0 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336476709|ref|YP_004615850.1| - 0.002 18.5 0.0 0.0068 16.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|336476709|ref|YP_004615850.1| - 0.0029 18.3 0.0 0.0051 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476709|ref|YP_004615850.1| - 0.029 14.8 0.0 0.053 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336476709|ref|YP_004615850.1| - 0.069 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Oxidored_FMN PF00724.15 gi|336476710|ref|YP_004615851.1| - 1.8e-80 270.5 0.0 2.1e-80 270.3 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|336476710|ref|YP_004615851.1| - 4.4e-06 26.1 0.0 3.4e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.12 gi|336476710|ref|YP_004615851.1| - 3.7e-05 22.7 0.0 6.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) MgtE PF01769.11 gi|336476711|ref|YP_004615852.1| - 3.3e-28 98.6 6.5 3.3e-28 98.6 4.5 1.8 2 0 0 2 2 2 1 Divalent cation transporter CBS PF00571.23 gi|336476711|ref|YP_004615852.1| - 1.1e-19 69.9 3.1 4.9e-09 35.8 0.0 2.5 2 0 0 2 2 2 2 CBS domain DUF3278 PF11683.3 gi|336476711|ref|YP_004615852.1| - 0.14 12.1 0.7 0.76 9.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3278) CbiZ PF01955.13 gi|336476712|ref|YP_004615853.1| - 2.1e-49 167.9 0.9 2.5e-49 167.6 0.7 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase AP_endonuc_2 PF01261.19 gi|336476713|ref|YP_004615854.1| - 1.8e-17 63.3 0.1 1.1e-16 60.8 0.1 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ThiC PF01964.13 gi|336476714|ref|YP_004615855.1| - 5.2e-184 611.6 0.3 6e-184 611.4 0.2 1.0 1 0 0 1 1 1 1 ThiC family Radical_SAM PF04055.16 gi|336476715|ref|YP_004615856.1| - 1e-06 28.9 0.6 4.2e-06 27.0 0.1 2.1 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336476715|ref|YP_004615856.1| - 0.001 19.1 0.2 0.002 18.2 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rad21_Rec8_N PF04825.8 gi|336476715|ref|YP_004615856.1| - 0.092 12.6 0.1 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 N terminus of Rad21 / Rec8 like protein PmbA_TldD PF01523.11 gi|336476716|ref|YP_004615857.1| - 1.3e-72 244.5 0.5 1.7e-72 244.1 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|336476717|ref|YP_004615858.1| - 2.1e-73 247.1 0.3 2.7e-73 246.7 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Beta_helix PF13229.1 gi|336476717|ref|YP_004615858.1| - 0.97 9.1 4.5 0.94 9.2 0.1 2.6 2 1 0 2 2 2 0 Right handed beta helix region Lon_C PF05362.8 gi|336476718|ref|YP_004615859.1| - 6e-32 110.6 5.9 1.1e-31 109.8 4.1 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|336476718|ref|YP_004615859.1| - 3.2e-30 105.2 0.1 2.1e-20 72.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|336476718|ref|YP_004615859.1| - 1.3e-17 63.6 0.1 6.4e-10 38.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|336476718|ref|YP_004615859.1| - 8e-16 57.9 0.5 8.5e-09 35.1 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain ChlI PF13541.1 gi|336476718|ref|YP_004615859.1| - 3.7e-12 45.8 0.6 8.1e-12 44.7 0.4 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|336476718|ref|YP_004615859.1| - 4.2e-12 45.9 0.0 2.3e-05 24.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|336476718|ref|YP_004615859.1| - 2.2e-09 36.6 5.0 0.0039 16.0 0.0 4.1 5 0 0 5 5 5 3 MCM2/3/5 family AAA PF00004.24 gi|336476718|ref|YP_004615859.1| - 1.4e-08 34.9 0.0 0.0022 18.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336476718|ref|YP_004615859.1| - 9.8e-06 25.7 0.0 0.005 16.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|336476718|ref|YP_004615859.1| - 1.6e-05 24.9 0.0 0.091 12.8 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|336476718|ref|YP_004615859.1| - 1.6e-05 25.1 0.0 5e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|336476718|ref|YP_004615859.1| - 2.5e-05 23.4 0.0 0.0079 15.2 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|336476718|ref|YP_004615859.1| - 5.6e-05 22.7 0.3 0.24 11.0 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|336476718|ref|YP_004615859.1| - 0.00011 21.9 0.0 0.0004 20.0 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_16 PF13191.1 gi|336476718|ref|YP_004615859.1| - 0.00023 21.1 0.0 0.035 14.0 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain PhoH PF02562.11 gi|336476718|ref|YP_004615859.1| - 0.0022 17.2 0.0 0.0058 15.8 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.1 gi|336476718|ref|YP_004615859.1| - 0.0064 16.0 0.0 0.017 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336476718|ref|YP_004615859.1| - 0.0077 16.1 0.1 0.039 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|336476718|ref|YP_004615859.1| - 0.015 14.7 0.0 0.061 12.7 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|336476718|ref|YP_004615859.1| - 0.017 15.9 0.0 0.061 14.1 0.0 2.0 2 0 0 2 2 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|336476718|ref|YP_004615859.1| - 0.023 13.3 0.0 0.046 12.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.22 gi|336476718|ref|YP_004615859.1| - 0.032 14.5 0.0 0.11 12.7 0.0 1.9 2 0 0 2 2 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|336476718|ref|YP_004615859.1| - 0.035 13.5 0.0 0.14 11.6 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family Parvo_NS1 PF01057.12 gi|336476718|ref|YP_004615859.1| - 0.05 12.4 0.0 0.091 11.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|336476718|ref|YP_004615859.1| - 0.052 12.4 0.0 0.11 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|336476718|ref|YP_004615859.1| - 0.062 13.2 0.0 0.23 11.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|336476718|ref|YP_004615859.1| - 0.068 12.8 0.0 0.42 10.2 0.0 2.3 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.4 gi|336476718|ref|YP_004615859.1| - 0.084 11.8 0.0 0.17 10.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma_reg_N PF13800.1 gi|336476719|ref|YP_004615860.1| - 0.0034 17.3 1.1 0.0058 16.6 0.8 1.4 1 0 0 1 1 1 1 Sigma factor regulator N-terminal PALP PF00291.20 gi|336476720|ref|YP_004615861.1| - 1.1e-22 80.6 0.0 1.5e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.16 gi|336476721|ref|YP_004615862.1| - 6.4e-19 68.0 0.0 1.5e-17 63.6 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|336476721|ref|YP_004615862.1| - 1.1e-09 38.0 0.0 4.5e-09 36.0 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.14 gi|336476721|ref|YP_004615862.1| - 0.068 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TrkA_N PF02254.13 gi|336476722|ref|YP_004615863.1| - 1.3e-28 99.3 2.2 2.9e-28 98.1 1.5 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|336476722|ref|YP_004615863.1| - 7.8e-12 44.6 0.3 2.5e-11 43.0 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain AlaDh_PNT_C PF01262.16 gi|336476722|ref|YP_004615863.1| - 0.00087 18.8 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|336476722|ref|YP_004615863.1| - 0.018 15.3 0.0 0.22 11.8 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain ELFV_dehydrog PF00208.16 gi|336476722|ref|YP_004615863.1| - 0.026 14.0 0.0 0.057 12.9 0.0 1.6 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336476722|ref|YP_004615863.1| - 0.044 12.9 0.0 0.059 12.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|336476722|ref|YP_004615863.1| - 0.047 13.7 0.1 0.097 12.7 0.0 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|336476722|ref|YP_004615863.1| - 0.068 13.0 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|336476722|ref|YP_004615863.1| - 0.11 11.5 0.1 0.2 10.5 0.1 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|336476723|ref|YP_004615864.1| - 5.5e-18 65.0 1.8 9.2e-18 64.3 1.2 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|336476723|ref|YP_004615864.1| - 2.3e-15 56.0 8.0 4e-15 55.2 5.5 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.16 gi|336476723|ref|YP_004615864.1| - 2.7e-12 46.0 0.0 3.3e-10 39.4 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain Ion_trans PF00520.26 gi|336476723|ref|YP_004615864.1| - 0.078 12.2 10.7 0.53 9.4 7.4 2.0 1 1 0 1 1 1 0 Ion transport protein DUF504 PF04457.7 gi|336476724|ref|YP_004615865.1| - 1.8e-15 56.8 1.8 2.5e-15 56.3 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF504) OrfB_IS605 PF01385.14 gi|336476725|ref|YP_004615866.1| - 2.4e-43 148.1 8.0 2.4e-43 148.1 5.6 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|336476725|ref|YP_004615866.1| - 1.5e-21 75.7 0.4 3.1e-21 74.7 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|336476725|ref|YP_004615866.1| - 5.8e-20 70.3 0.2 2.6e-19 68.2 0.5 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2296 PF10058.4 gi|336476725|ref|YP_004615866.1| - 0.063 13.0 1.0 0.14 11.9 0.7 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Prok-RING_1 PF14446.1 gi|336476725|ref|YP_004615866.1| - 0.18 11.5 1.3 0.33 10.7 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|336476725|ref|YP_004615866.1| - 0.26 11.1 1.6 0.49 10.2 1.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|336476725|ref|YP_004615866.1| - 1.4 8.5 4.4 13 5.4 3.1 2.3 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|336476725|ref|YP_004615866.1| - 6.4 5.9 7.5 8.8 5.5 1.0 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF39 PF01837.11 gi|336476726|ref|YP_004615867.1| - 2.3e-106 355.3 0.0 2.6e-106 355.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|336476726|ref|YP_004615867.1| - 1.2e-05 25.5 11.1 7.2e-05 23.0 7.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476726|ref|YP_004615867.1| - 7.1e-05 22.2 14.2 0.00018 20.9 1.5 3.2 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476726|ref|YP_004615867.1| - 8.2e-05 22.7 11.3 0.0002 21.5 7.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476726|ref|YP_004615867.1| - 0.00011 21.8 11.5 0.021 14.7 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476726|ref|YP_004615867.1| - 0.00017 21.3 13.2 0.00037 20.2 8.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476726|ref|YP_004615867.1| - 0.00041 20.1 8.4 0.00086 19.1 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476726|ref|YP_004615867.1| - 0.0015 18.8 5.9 0.4 11.0 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476726|ref|YP_004615867.1| - 0.0083 15.9 13.3 0.06 13.2 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476726|ref|YP_004615867.1| - 0.011 15.7 11.7 0.081 12.9 0.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476726|ref|YP_004615867.1| - 0.02 15.2 3.0 0.02 15.2 2.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336476726|ref|YP_004615867.1| - 2.5 8.8 11.8 0.66 10.7 1.0 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|336476726|ref|YP_004615867.1| - 3.8 8.2 13.5 1.6 9.5 3.0 3.2 2 1 0 2 2 2 0 4Fe-4S binding domain AhpC-TSA PF00578.16 gi|336476728|ref|YP_004615869.1| - 2.4e-33 114.4 0.0 3.2e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336476728|ref|YP_004615869.1| - 8.8e-11 41.5 0.0 5.3e-09 35.7 0.0 2.1 1 1 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|336476728|ref|YP_004615869.1| - 2.7e-09 36.5 0.0 4.9e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin NPHI_C PF08469.5 gi|336476728|ref|YP_004615869.1| - 0.097 12.5 0.3 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 Nucleoside triphosphatase I C-terminal DUF1638 PF07796.6 gi|336476729|ref|YP_004615870.1| - 7e-40 136.3 0.0 9.3e-40 135.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) ABC2_membrane_5 PF13346.1 gi|336476730|ref|YP_004615871.1| - 0.00034 19.9 3.4 0.00034 19.9 2.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF1129 PF06570.6 gi|336476730|ref|YP_004615871.1| - 0.0014 17.9 1.6 0.0015 17.8 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) Yip1 PF04893.12 gi|336476730|ref|YP_004615871.1| - 0.0039 16.6 1.4 0.0043 16.5 1.0 1.1 1 0 0 1 1 1 1 Yip1 domain Abi PF02517.11 gi|336476730|ref|YP_004615871.1| - 0.012 15.7 1.3 0.014 15.5 0.9 1.2 1 0 0 1 1 1 0 CAAX protease self-immunity PTS_EIIC_2 PF13303.1 gi|336476730|ref|YP_004615871.1| - 0.018 13.9 3.6 0.02 13.7 2.5 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC DUF4282 PF14110.1 gi|336476730|ref|YP_004615871.1| - 0.022 14.9 5.2 0.025 14.7 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) 2TM PF13239.1 gi|336476730|ref|YP_004615871.1| - 0.023 14.7 0.4 0.027 14.5 0.3 1.2 1 0 0 1 1 1 0 2TM domain FA_desaturase PF00487.19 gi|336476730|ref|YP_004615871.1| - 0.053 12.9 0.2 0.057 12.8 0.1 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF4191 PF13829.1 gi|336476730|ref|YP_004615871.1| - 0.054 12.5 1.3 0.057 12.5 0.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) VIT1 PF01988.14 gi|336476730|ref|YP_004615871.1| - 0.062 12.7 1.2 0.066 12.6 0.8 1.0 1 0 0 1 1 1 0 VIT family DUF2723 PF11028.3 gi|336476730|ref|YP_004615871.1| - 0.11 12.0 3.4 0.12 11.8 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) ABC2_membrane_4 PF12730.2 gi|336476730|ref|YP_004615871.1| - 0.11 11.6 4.6 0.13 11.4 3.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein E1-E2_ATPase PF00122.15 gi|336476730|ref|YP_004615871.1| - 0.16 11.0 2.1 0.18 10.8 1.5 1.1 1 0 0 1 1 1 0 E1-E2 ATPase RseC_MucC PF04246.7 gi|336476730|ref|YP_004615871.1| - 0.2 11.2 4.3 0.24 10.9 3.0 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF805 PF05656.9 gi|336476730|ref|YP_004615871.1| - 0.42 10.4 2.8 0.52 10.1 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF4013 PF13197.1 gi|336476730|ref|YP_004615871.1| - 0.46 9.7 10.3 0.51 9.6 7.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF2207 PF09972.4 gi|336476730|ref|YP_004615871.1| - 0.48 8.9 2.5 0.49 8.9 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4083 PF13314.1 gi|336476730|ref|YP_004615871.1| - 0.54 10.1 13.3 0.66 9.8 2.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) Gram_pos_anchor PF00746.16 gi|336476730|ref|YP_004615871.1| - 0.59 10.0 4.2 3.9 7.3 0.3 2.1 2 0 0 2 2 2 0 Gram positive anchor DUF2628 PF10947.3 gi|336476730|ref|YP_004615871.1| - 0.71 9.6 5.8 0.87 9.4 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF3311 PF11755.3 gi|336476730|ref|YP_004615871.1| - 0.84 9.2 7.5 4.8 6.7 5.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3311) FeoB_C PF07664.7 gi|336476730|ref|YP_004615871.1| - 0.96 8.9 11.9 1.8 8.0 2.5 2.1 1 1 1 2 2 2 0 Ferrous iron transport protein B C terminus PrgI PF12666.2 gi|336476730|ref|YP_004615871.1| - 0.99 9.5 8.1 1.3 9.2 5.6 1.1 1 0 0 1 1 1 0 PrgI family protein SecE PF00584.15 gi|336476730|ref|YP_004615871.1| - 1.1 8.9 5.6 1.7 8.2 1.2 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex DUF4131 PF13567.1 gi|336476730|ref|YP_004615871.1| - 1.2 8.4 3.6 1.4 8.2 2.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) UPF0233 PF06781.7 gi|336476730|ref|YP_004615871.1| - 1.5 8.4 3.7 2.3 7.8 2.5 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0233) Flp_Fap PF04964.9 gi|336476730|ref|YP_004615871.1| - 1.5 8.4 5.2 3.6 7.2 0.4 2.2 2 0 0 2 2 2 0 Flp/Fap pilin component SdpI PF13630.1 gi|336476730|ref|YP_004615871.1| - 1.9 8.2 6.2 2.6 7.8 4.3 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family HOK_GEF PF01848.11 gi|336476730|ref|YP_004615871.1| - 2.9 7.2 6.6 0.3 10.4 0.9 1.9 2 0 0 2 2 2 0 Hok/gef family DUF202 PF02656.10 gi|336476730|ref|YP_004615871.1| - 5.3 7.3 6.9 7.8 6.8 4.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3753 PF12575.3 gi|336476730|ref|YP_004615871.1| - 5.8 6.7 9.0 6.9 6.5 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) DUF1656 PF07869.7 gi|336476730|ref|YP_004615871.1| - 7.7 6.3 8.5 5.1 6.9 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) DUF1206 PF06724.6 gi|336476730|ref|YP_004615871.1| - 7.8 6.3 10.6 0.62 9.8 2.0 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) CMD PF02627.15 gi|336476731|ref|YP_004615872.1| - 2.1e-11 43.4 0.0 2.7e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Tsg PF04668.7 gi|336476731|ref|YP_004615872.1| - 0.0084 16.3 0.0 0.011 15.9 0.0 1.1 1 0 0 1 1 1 1 Twisted gastrulation (Tsg) protein conserved region Orthopox_35kD PF02250.10 gi|336476731|ref|YP_004615872.1| - 0.069 12.4 0.0 0.082 12.1 0.0 1.1 1 0 0 1 1 1 0 35kD major secreted virus protein DBI_PRT PF02277.12 gi|336476732|ref|YP_004615873.1| - 4.3e-24 85.2 0.1 6.7e-24 84.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase MinC_C PF03775.11 gi|336476732|ref|YP_004615873.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain tRNA-synt_2b PF00587.20 gi|336476733|ref|YP_004615874.1| - 1.5e-21 76.7 0.3 6.6e-21 74.6 0.2 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336476733|ref|YP_004615874.1| - 9e-20 70.4 0.2 1.7e-19 69.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|336476733|ref|YP_004615874.1| - 7.8e-14 51.3 0.3 2.5e-13 49.7 0.1 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal zf-ZPR1 PF03367.8 gi|336476734|ref|YP_004615875.1| - 6e-44 149.0 0.0 7.3e-44 148.7 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF3943 PF13084.1 gi|336476734|ref|YP_004615875.1| - 0.056 13.0 0.0 0.2 11.2 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3943) DUF552 PF04472.7 gi|336476735|ref|YP_004615876.1| - 2.3e-17 62.6 0.3 2.3e-17 62.6 0.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF552) YopX PF09643.5 gi|336476735|ref|YP_004615876.1| - 0.022 14.7 0.1 0.023 14.6 0.1 1.2 1 0 0 1 1 1 0 YopX protein tRNA-synt_1 PF00133.17 gi|336476736|ref|YP_004615877.1| - 8.3e-204 677.9 5.7 1.1e-203 677.6 4.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|336476736|ref|YP_004615877.1| - 3.3e-36 124.3 0.4 7.7e-36 123.1 0.3 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|336476736|ref|YP_004615877.1| - 7.4e-28 97.2 5.9 6.2e-14 51.4 0.5 3.8 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|336476736|ref|YP_004615877.1| - 7.2e-06 25.3 0.0 1.5e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|336476736|ref|YP_004615877.1| - 0.0012 17.6 0.0 0.0047 15.6 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|336476736|ref|YP_004615877.1| - 0.0064 15.7 0.1 0.027 13.7 0.1 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 MAF_flag10 PF01973.13 gi|336476737|ref|YP_004615878.1| - 1.6e-32 112.3 0.1 2e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|336476737|ref|YP_004615878.1| - 0.00032 20.2 0.2 0.0078 15.7 0.1 2.2 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain Peptidase_S24 PF00717.18 gi|336476737|ref|YP_004615878.1| - 0.063 12.9 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Peptidase S24-like DUF373 PF04123.8 gi|336476738|ref|YP_004615879.1| - 8.6e-113 376.8 13.4 9.9e-113 376.6 9.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PRA1 PF03208.14 gi|336476738|ref|YP_004615879.1| - 2.2 7.6 11.7 2 7.7 5.7 2.3 1 1 1 2 2 2 0 PRA1 family protein PNP_UDP_1 PF01048.15 gi|336476739|ref|YP_004615880.1| - 3.8e-47 160.2 0.0 4.2e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily KaiC PF06745.8 gi|336476740|ref|YP_004615881.1| - 3.1e-12 46.1 0.3 3.9e-12 45.7 0.2 1.1 1 0 0 1 1 1 1 KaiC DEAD PF00270.24 gi|336476741|ref|YP_004615882.1| - 1e-25 90.2 0.1 2.9e-25 88.7 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336476741|ref|YP_004615882.1| - 5.4e-14 51.8 0.0 1.1e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336476741|ref|YP_004615882.1| - 1.6e-06 28.0 0.0 4.5e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|336476741|ref|YP_004615882.1| - 0.002 16.9 0.0 0.0033 16.2 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain SecA_DEAD PF07517.9 gi|336476741|ref|YP_004615882.1| - 0.01 15.1 0.2 0.019 14.2 0.0 1.6 2 0 0 2 2 2 0 SecA DEAD-like domain Spore_GerAC PF05504.6 gi|336476741|ref|YP_004615882.1| - 0.072 12.8 0.9 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 Spore germination B3/ GerAC like, C-terminal DUF3467 PF11950.3 gi|336476742|ref|YP_004615883.1| - 1.1e-15 57.4 0.0 1.3e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) LSM PF01423.17 gi|336476743|ref|YP_004615884.1| - 2.9e-16 58.7 0.7 4.8e-16 58.0 0.5 1.3 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|336476743|ref|YP_004615884.1| - 0.055 13.3 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 Ataxin 2 SM domain B-block_TFIIIC PF04182.7 gi|336476744|ref|YP_004615885.1| - 2.9e-06 27.0 0.0 4.2e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|336476744|ref|YP_004615885.1| - 0.00087 18.9 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336476744|ref|YP_004615885.1| - 0.0049 16.5 0.0 0.0075 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|336476744|ref|YP_004615885.1| - 0.0061 16.8 0.1 0.0093 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain GSH_synth_ATP PF03917.12 gi|336476745|ref|YP_004615886.1| - 0.051 12.1 0.0 0.055 12.0 0.0 1.0 1 0 0 1 1 1 0 Eukaryotic glutathione synthase, ATP binding domain TPR_1 PF00515.23 gi|336476746|ref|YP_004615887.1| - 2.1e-11 42.8 0.3 3.8e-08 32.6 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|336476746|ref|YP_004615887.1| - 1.7e-10 39.9 0.2 6e-05 22.6 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|336476746|ref|YP_004615887.1| - 4.9e-10 38.9 0.1 1.5e-09 37.3 0.1 1.9 1 0 0 1 1 1 1 TPR repeat TPR_8 PF13181.1 gi|336476746|ref|YP_004615887.1| - 3.7e-09 35.6 1.3 6.8e-06 25.4 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|336476746|ref|YP_004615887.1| - 3.9e-06 27.0 0.0 0.02 15.4 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|336476746|ref|YP_004615887.1| - 4.1e-06 26.6 0.0 1.4e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|336476746|ref|YP_004615887.1| - 4.3e-06 26.1 0.0 0.011 15.5 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|336476746|ref|YP_004615887.1| - 5e-05 23.8 0.0 9.9e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|336476746|ref|YP_004615887.1| - 0.00013 21.7 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|336476746|ref|YP_004615887.1| - 0.00044 20.5 0.0 0.27 11.6 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|336476746|ref|YP_004615887.1| - 0.00081 19.2 0.1 0.051 13.4 0.0 2.5 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat RPN7 PF10602.4 gi|336476746|ref|YP_004615887.1| - 0.01 15.2 0.3 0.62 9.4 0.0 2.4 1 1 1 2 2 2 0 26S proteasome subunit RPN7 TPR_6 PF13174.1 gi|336476746|ref|YP_004615887.1| - 0.017 15.5 0.0 0.1 13.0 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Apc5 PF12862.2 gi|336476746|ref|YP_004615887.1| - 0.023 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 DDE_Tnp_1 PF01609.16 gi|336476747|ref|YP_004615888.1| - 1.3e-06 28.1 2.2 4.4e-06 26.4 1.5 1.9 1 1 0 1 1 1 1 Transposase DDE domain FKBP_C PF00254.23 gi|336476748|ref|YP_004615889.1| - 1.3e-22 79.6 0.2 1.5e-22 79.3 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Y1_Tnp PF01797.11 gi|336476750|ref|YP_004615891.1| - 3.3e-32 110.8 3.1 3.8e-32 110.7 2.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like chaperone_DMP PF10448.4 gi|336476750|ref|YP_004615891.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.3 1 1 0 1 1 1 0 20S proteasome chaperone OrfB_IS605 PF01385.14 gi|336476751|ref|YP_004615892.1| - 8.4e-45 152.9 3.0 1.2e-44 152.4 2.1 1.2 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|336476751|ref|YP_004615892.1| - 1.8e-22 78.3 1.5 4.1e-22 77.2 1.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|336476751|ref|YP_004615892.1| - 3.5e-21 74.6 0.1 9.5e-21 73.2 0.1 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-piccolo PF05715.8 gi|336476751|ref|YP_004615892.1| - 0.098 12.6 0.7 0.2 11.6 0.5 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger PBP_sp32 PF07222.7 gi|336476751|ref|YP_004615892.1| - 0.12 11.5 0.9 0.22 10.6 0.6 1.4 1 0 0 1 1 1 0 Proacrosin binding protein sp32 zf-RanBP PF00641.13 gi|336476751|ref|YP_004615892.1| - 0.17 10.9 4.5 2 7.5 0.3 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin PF00301.15 gi|336476751|ref|YP_004615892.1| - 0.62 9.9 4.8 1.3 8.9 0.2 2.5 2 0 0 2 2 2 0 Rubredoxin UPF0016 PF01169.14 gi|336476752|ref|YP_004615893.1| - 7.3e-43 144.5 23.2 2.2e-23 82.2 5.7 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|336476752|ref|YP_004615893.1| - 7.4e-06 25.5 14.6 0.0024 17.3 2.4 2.2 1 1 1 2 2 2 2 Sulfite exporter TauE/SafE TerC PF03741.11 gi|336476752|ref|YP_004615893.1| - 0.00069 19.0 14.2 0.0039 16.6 9.9 1.9 1 1 0 1 1 1 1 Integral membrane protein TerC family DUF204 PF02659.10 gi|336476752|ref|YP_004615893.1| - 0.16 12.0 17.8 0.32 11.1 3.6 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF SANTA PF09133.5 gi|336476752|ref|YP_004615893.1| - 0.17 11.8 0.7 17 5.4 0.1 2.2 2 0 0 2 2 2 0 SANTA (SANT Associated) Herpes_US9 PF06072.6 gi|336476752|ref|YP_004615893.1| - 0.23 11.3 8.8 1.6 8.5 0.3 2.8 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 ABC2_membrane_4 PF12730.2 gi|336476752|ref|YP_004615893.1| - 0.45 9.6 26.3 0.89 8.6 6.5 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336476752|ref|YP_004615893.1| - 1.1 8.4 21.4 0.72 9.0 1.9 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein DsbD_2 PF13386.1 gi|336476752|ref|YP_004615893.1| - 2.2 7.9 15.3 0.66 9.6 3.0 2.2 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region NfeD PF01957.13 gi|336476752|ref|YP_004615893.1| - 9.1 6.4 10.3 5.4 7.1 0.3 2.8 1 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding UPF0259 PF06790.6 gi|336476753|ref|YP_004615894.1| - 0.0022 17.4 20.6 0.0022 17.4 14.2 3.0 1 1 2 3 3 3 2 Uncharacterised protein family (UPF0259) OppC_N PF12911.2 gi|336476753|ref|YP_004615894.1| - 0.013 14.9 2.9 0.013 14.9 2.0 4.7 5 1 1 6 6 6 0 N-terminal TM domain of oligopeptide transport permease C DUF3087 PF11286.3 gi|336476753|ref|YP_004615894.1| - 3.5 6.8 8.3 0.44 9.7 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) DUF4013 PF13197.1 gi|336476753|ref|YP_004615894.1| - 6.7 6.0 52.0 0.94 8.7 14.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) Methyltransf_11 PF08241.7 gi|336476754|ref|YP_004615895.1| - 3.6e-24 85.0 0.0 5.2e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336476754|ref|YP_004615895.1| - 1.4e-15 57.3 0.0 1.8e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336476754|ref|YP_004615895.1| - 5.7e-15 55.0 0.2 1.1e-14 54.0 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|336476754|ref|YP_004615895.1| - 9.1e-15 54.5 0.0 1.2e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476754|ref|YP_004615895.1| - 1.6e-14 54.1 0.0 2.3e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336476754|ref|YP_004615895.1| - 9.5e-10 39.0 0.0 1.5e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336476754|ref|YP_004615895.1| - 1.7e-09 37.9 0.0 4.3e-09 36.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|336476754|ref|YP_004615895.1| - 0.00019 20.6 0.0 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|336476754|ref|YP_004615895.1| - 0.00066 19.1 0.0 0.00095 18.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|336476754|ref|YP_004615895.1| - 0.00091 19.2 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336476754|ref|YP_004615895.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain CsgF PF10614.4 gi|336476756|ref|YP_004615897.1| - 0.0043 17.0 0.2 0.0053 16.7 0.1 1.1 1 0 0 1 1 1 1 Type VIII secretion system (T8SS), CsgF protein tRNA_NucTransf2 PF09249.6 gi|336476757|ref|YP_004615898.1| - 3.1e-44 149.4 0.0 6.7e-44 148.4 0.0 1.6 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|336476757|ref|YP_004615898.1| - 3.6e-10 40.0 0.9 1e-09 38.5 0.0 2.2 2 1 0 2 2 2 1 Nucleotidyltransferase domain OAS1_C PF10421.4 gi|336476757|ref|YP_004615898.1| - 0.038 13.4 0.0 0.59 9.5 0.0 2.2 2 0 0 2 2 2 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus OGG_N PF07934.7 gi|336476758|ref|YP_004615899.1| - 1.2e-24 86.5 0.5 3e-24 85.2 0.1 1.8 2 0 0 2 2 2 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|336476758|ref|YP_004615899.1| - 5.7e-08 33.0 0.0 8.3e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|336476758|ref|YP_004615899.1| - 0.00025 20.5 0.0 0.0005 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|336476758|ref|YP_004615899.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif ADP_PFK_GK PF04587.10 gi|336476759|ref|YP_004615900.1| - 9.4e-66 221.8 0.1 1.1e-65 221.6 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.19 gi|336476759|ref|YP_004615900.1| - 0.017 14.2 0.6 0.62 9.1 0.0 3.2 4 0 0 4 4 4 0 pfkB family carbohydrate kinase ADP_PFK_GK PF04587.10 gi|336476760|ref|YP_004615901.1| - 6.6e-119 397.0 0.6 7.6e-119 396.8 0.4 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ArgJ PF01960.13 gi|336476761|ref|YP_004615902.1| - 1.3e-135 451.7 10.4 1.5e-135 451.5 7.2 1.0 1 0 0 1 1 1 1 ArgJ family Bcl-2 PF00452.14 gi|336476761|ref|YP_004615902.1| - 0.073 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family CBS PF00571.23 gi|336476762|ref|YP_004615903.1| - 4.9e-36 122.2 1.7 1.9e-18 65.9 0.1 2.2 2 0 0 2 2 2 2 CBS domain Semialdhyde_dh PF01118.19 gi|336476763|ref|YP_004615904.1| - 1.1e-32 112.8 0.0 1.8e-32 112.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|336476763|ref|YP_004615904.1| - 9.3e-21 74.5 0.0 1.5e-20 73.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|336476763|ref|YP_004615904.1| - 0.00015 22.1 0.0 0.00029 21.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|336476763|ref|YP_004615904.1| - 0.0038 17.7 0.0 0.0073 16.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|336476763|ref|YP_004615904.1| - 0.068 13.0 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CBS PF00571.23 gi|336476764|ref|YP_004615905.1| - 3e-29 100.5 1.5 8.6e-16 57.4 0.2 2.5 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|336476764|ref|YP_004615905.1| - 4.6e-27 95.0 0.0 7e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|336476764|ref|YP_004615905.1| - 1.1e-10 41.7 0.0 1.6e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336476764|ref|YP_004615905.1| - 0.0048 16.6 0.1 0.06 13.1 0.0 2.3 2 1 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|336476764|ref|YP_004615905.1| - 0.059 12.7 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Cys_Met_Meta_PP PF01053.15 gi|336476765|ref|YP_004615906.1| - 3.1e-142 473.4 0.0 3.5e-142 473.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|336476765|ref|YP_004615906.1| - 2.3e-09 36.7 0.0 3.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|336476765|ref|YP_004615906.1| - 6.3e-08 31.9 0.0 9.5e-08 31.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|336476765|ref|YP_004615906.1| - 1.3e-06 27.4 0.1 1.8e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|336476765|ref|YP_004615906.1| - 0.00034 19.8 0.0 0.0007 18.8 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.6 gi|336476765|ref|YP_004615906.1| - 0.00099 17.5 2.2 0.026 12.8 1.5 2.1 1 1 0 1 1 1 1 Methionine gamma-lyase GDC-P PF02347.11 gi|336476765|ref|YP_004615906.1| - 0.0096 14.6 0.1 0.013 14.1 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein Nuc_deoxyrib_tr PF05014.10 gi|336476766|ref|YP_004615907.1| - 4.6e-32 110.2 0.0 5.5e-32 109.9 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TIR_2 PF13676.1 gi|336476766|ref|YP_004615907.1| - 0.012 15.7 0.0 0.035 14.2 0.0 1.7 1 1 0 1 1 1 0 TIR domain DUF4406 PF14359.1 gi|336476766|ref|YP_004615907.1| - 0.059 13.4 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) GrpE PF01025.14 gi|336476766|ref|YP_004615907.1| - 0.15 11.6 0.1 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 GrpE AMMECR1 PF01871.12 gi|336476767|ref|YP_004615908.1| - 2.5e-58 195.9 0.0 3e-58 195.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NuA4 PF09340.5 gi|336476767|ref|YP_004615908.1| - 0.14 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Histone acetyltransferase subunit NuA4 OrfB_IS605 PF01385.14 gi|336476768|ref|YP_004615909.1| - 5.5e-44 150.2 7.7 5.5e-44 150.2 5.3 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|336476768|ref|YP_004615909.1| - 1.6e-21 75.7 0.4 3.1e-21 74.7 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|336476768|ref|YP_004615909.1| - 5.6e-20 70.3 0.2 2.6e-19 68.2 0.5 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2296 PF10058.4 gi|336476768|ref|YP_004615909.1| - 0.063 13.0 1.0 0.14 11.9 0.7 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Prok-RING_1 PF14446.1 gi|336476768|ref|YP_004615909.1| - 0.18 11.5 1.3 0.33 10.7 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|336476768|ref|YP_004615909.1| - 0.26 11.1 1.6 0.49 10.2 1.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|336476768|ref|YP_004615909.1| - 1.4 8.5 4.4 13 5.4 3.1 2.3 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|336476768|ref|YP_004615909.1| - 6.4 5.9 7.5 8.8 5.5 1.0 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others PGK PF00162.14 gi|336476769|ref|YP_004615910.1| - 9.4e-117 389.8 0.5 1.1e-116 389.6 0.3 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DRTGG PF07085.7 gi|336476770|ref|YP_004615911.1| - 1.8e-32 111.0 0.1 4.4e-32 109.8 0.0 1.7 1 0 0 1 1 1 1 DRTGG domain AAA_26 PF13500.1 gi|336476770|ref|YP_004615911.1| - 5.2e-28 98.0 0.0 1.2e-27 96.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain Hpr_kinase_N PF02603.11 gi|336476770|ref|YP_004615911.1| - 0.00032 20.3 0.0 0.0023 17.6 0.0 2.3 1 1 1 2 2 2 1 HPr Serine kinase N terminus CbiA PF01656.18 gi|336476770|ref|YP_004615911.1| - 0.001 18.4 0.1 0.0035 16.7 0.1 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|336476770|ref|YP_004615911.1| - 0.13 11.9 0.1 13 5.4 0.0 2.9 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-grasp_5 PF13549.1 gi|336476771|ref|YP_004615912.1| - 7.1e-76 254.2 0.0 1.1e-75 253.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|336476771|ref|YP_004615912.1| - 2.9e-53 179.1 0.5 4.9e-52 175.1 0.1 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|336476771|ref|YP_004615912.1| - 1.8e-26 92.5 0.0 5.9e-26 90.9 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|336476771|ref|YP_004615912.1| - 3.1e-15 56.4 0.2 1.2e-14 54.5 0.2 2.1 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|336476771|ref|YP_004615912.1| - 0.023 15.1 0.3 0.13 12.7 0.0 2.3 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Ligase_CoA PF00549.14 gi|336476771|ref|YP_004615912.1| - 0.081 12.5 0.0 0.36 10.4 0.0 2.0 2 0 0 2 2 2 0 CoA-ligase FMN_red PF03358.10 gi|336476772|ref|YP_004615913.1| - 6.2e-36 123.1 0.0 8e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336476772|ref|YP_004615913.1| - 9.5e-14 51.3 0.0 1.3e-13 50.9 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|336476772|ref|YP_004615913.1| - 0.004 17.1 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain GSDH PF07995.6 gi|336476773|ref|YP_004615914.1| - 4.5e-89 298.8 0.0 5.3e-89 298.5 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.6 gi|336476773|ref|YP_004615914.1| - 0.068 13.2 1.1 82 3.7 0.1 4.4 3 0 0 3 3 3 0 Two component regulator propeller NHL PF01436.16 gi|336476773|ref|YP_004615914.1| - 0.11 12.4 0.0 82 3.4 0.0 3.9 4 0 0 4 4 4 0 NHL repeat DUF2973 PF11189.3 gi|336476773|ref|YP_004615914.1| - 0.2 11.4 2.4 3.2 7.6 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2973) ACT_6 PF13740.1 gi|336476774|ref|YP_004615915.1| - 1.6e-16 59.7 0.2 1.9e-16 59.5 0.1 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|336476774|ref|YP_004615915.1| - 2.2e-10 39.7 0.5 2.9e-10 39.3 0.4 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|336476774|ref|YP_004615915.1| - 1e-05 25.7 1.4 1.1e-05 25.6 0.4 1.4 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|336476774|ref|YP_004615915.1| - 0.00099 18.5 1.0 0.0014 18.1 0.7 1.2 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.7 gi|336476775|ref|YP_004615916.1| - 3.2e-180 599.1 8.4 4e-180 598.8 5.8 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF4041 PF13250.1 gi|336476775|ref|YP_004615916.1| - 0.13 11.8 0.2 0.98 9.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) CxxCxxCC PF03692.10 gi|336476776|ref|YP_004615917.1| - 0.13 12.7 1.4 0.65 10.5 1.0 1.9 1 1 0 1 1 1 0 Putative zinc- or iron-chelating domain HIT PF01230.18 gi|336476777|ref|YP_004615918.1| - 9e-28 96.6 0.0 1.1e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|336476777|ref|YP_004615918.1| - 3.6e-14 52.9 0.0 4.4e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|336476777|ref|YP_004615918.1| - 0.00033 20.2 0.0 0.00044 19.8 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF4177 PF13783.1 gi|336476778|ref|YP_004615919.1| - 1.1e-11 44.1 0.1 1.3e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) HisKA_2 PF07568.7 gi|336476779|ref|YP_004615920.1| - 7.2e-22 77.0 1.8 7.2e-22 77.0 1.2 2.4 2 0 0 2 2 2 1 Histidine kinase HWE_HK PF07536.9 gi|336476779|ref|YP_004615920.1| - 1e-07 32.2 0.1 2e-07 31.3 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_8 PF13188.1 gi|336476779|ref|YP_004615920.1| - 1.3e-07 31.1 0.1 5.6e-07 29.1 0.1 2.0 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.1 gi|336476779|ref|YP_004615920.1| - 8.1e-06 26.1 0.1 1.7e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|336476779|ref|YP_004615920.1| - 0.00012 21.7 0.3 0.00057 19.6 0.0 2.3 2 1 0 2 2 2 1 PAS fold UPF0004 PF00919.15 gi|336476780|ref|YP_004615921.1| - 2.3e-22 78.6 1.6 4.2e-22 77.8 1.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|336476780|ref|YP_004615921.1| - 1.6e-21 77.2 0.1 5.3e-21 75.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.15 gi|336476780|ref|YP_004615921.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 TRAM domain DUF1098 PF06497.6 gi|336476780|ref|YP_004615921.1| - 0.1 12.6 0.9 0.92 9.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1098) Fer4_12 PF13353.1 gi|336476780|ref|YP_004615921.1| - 0.21 11.7 3.5 0.21 11.7 0.8 2.4 3 1 0 3 3 3 0 4Fe-4S single cluster domain FBPase_glpX PF03320.8 gi|336476781|ref|YP_004615922.1| - 2.4e-117 391.0 7.1 2.7e-117 390.8 4.9 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CGI-121 PF08617.5 gi|336476782|ref|YP_004615923.1| - 3.7e-23 81.9 2.4 4.4e-23 81.7 1.7 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PALP PF00291.20 gi|336476783|ref|YP_004615924.1| - 6.1e-74 248.9 3.3 7.3e-74 248.7 2.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1 PF00133.17 gi|336476784|ref|YP_004615925.1| - 7e-63 212.5 2.5 3.7e-44 150.7 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|336476784|ref|YP_004615925.1| - 5.3e-31 107.6 2.7 3e-13 49.2 0.0 3.3 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|336476784|ref|YP_004615925.1| - 7.6e-17 61.4 0.4 1.9e-16 60.1 0.2 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|336476784|ref|YP_004615925.1| - 1.9e-11 43.6 2.0 1.7e-07 30.6 0.0 3.3 4 0 0 4 4 4 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|336476784|ref|YP_004615925.1| - 5.3e-09 35.6 0.0 1.2e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|336476784|ref|YP_004615925.1| - 0.0012 17.7 0.0 0.003 16.4 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|336476784|ref|YP_004615925.1| - 0.0017 17.0 1.2 0.0026 16.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) YxiJ PF14176.1 gi|336476784|ref|YP_004615925.1| - 0.011 15.8 0.5 2.8 8.1 0.1 2.9 2 0 0 2 2 2 0 YxiJ-like protein CN_hydrolase PF00795.17 gi|336476785|ref|YP_004615926.1| - 5.7e-29 100.8 0.0 7.7e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase MscS_TM PF12794.2 gi|336476786|ref|YP_004615927.1| - 0.0063 15.1 0.0 0.0068 15.0 0.0 1.0 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 DUF4328 PF14219.1 gi|336476786|ref|YP_004615927.1| - 0.007 15.6 0.0 0.0075 15.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4328) DUF2621 PF11084.3 gi|336476786|ref|YP_004615927.1| - 0.038 13.6 0.1 0.038 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) DUF3609 PF12259.3 gi|336476786|ref|YP_004615927.1| - 0.086 11.4 0.0 0.086 11.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3609) OSTbeta PF15048.1 gi|336476786|ref|YP_004615927.1| - 0.14 12.2 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein PufQ PF05398.6 gi|336476786|ref|YP_004615927.1| - 0.16 12.0 0.3 0.19 11.7 0.2 1.2 1 0 0 1 1 1 0 PufQ cytochrome subunit TBPIP PF07106.8 gi|336476787|ref|YP_004615928.1| - 0.038 13.5 0.1 0.13 11.8 0.1 1.9 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DJ-1_PfpI PF01965.19 gi|336476788|ref|YP_004615929.1| - 5.3e-30 103.8 0.3 7.5e-30 103.3 0.2 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|336476788|ref|YP_004615929.1| - 6e-11 41.8 0.0 7.3e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase DUF2124 PF09897.4 gi|336476788|ref|YP_004615929.1| - 0.019 14.6 0.1 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) DUF2117 PF09890.4 gi|336476789|ref|YP_004615930.1| - 9.7e-55 185.0 0.0 1.6e-54 184.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) HATPase_c PF02518.21 gi|336476790|ref|YP_004615931.1| - 9.3e-32 109.0 0.1 1.9e-31 108.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|336476790|ref|YP_004615931.1| - 1.4e-31 108.3 0.6 1.9e-12 47.1 0.0 3.3 3 0 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|336476790|ref|YP_004615931.1| - 1.2e-14 54.0 0.2 3.3e-14 52.6 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|336476790|ref|YP_004615931.1| - 3.1e-11 43.5 0.2 3.1e-06 27.5 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.1 gi|336476790|ref|YP_004615931.1| - 2.1e-10 40.0 0.1 6.7e-08 32.1 0.0 3.4 3 0 0 3 3 3 1 PAS domain PAS PF00989.19 gi|336476790|ref|YP_004615931.1| - 2.9e-07 30.2 0.1 3.9e-06 26.6 0.0 2.8 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.1 gi|336476790|ref|YP_004615931.1| - 0.0002 20.9 0.6 0.0002 20.9 0.4 2.7 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.1 gi|336476790|ref|YP_004615931.1| - 0.0011 18.6 1.3 0.0018 17.8 0.2 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|336476790|ref|YP_004615931.1| - 0.0022 18.0 0.3 0.037 14.0 0.1 2.6 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|336476790|ref|YP_004615931.1| - 0.035 13.8 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain H_lectin PF09458.5 gi|336476790|ref|YP_004615931.1| - 0.082 12.5 0.1 0.53 9.9 0.0 2.4 3 0 0 3 3 3 0 H-type lectin domain PAS_4 PF08448.5 gi|336476790|ref|YP_004615931.1| - 0.1 12.6 0.0 0.91 9.5 0.0 2.3 2 0 0 2 2 2 0 PAS fold eIF-1a PF01176.14 gi|336476791|ref|YP_004615932.1| - 8.4e-19 66.7 0.2 1.1e-18 66.3 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Baculo_PEP_C PF04513.7 gi|336476792|ref|YP_004615933.1| - 0.068 12.9 17.8 0.44 10.3 0.7 4.3 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1409 PF07197.7 gi|336476792|ref|YP_004615933.1| - 0.088 12.8 5.5 0.27 11.3 1.3 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1409) Filament PF00038.16 gi|336476792|ref|YP_004615933.1| - 0.17 11.3 39.0 0.18 11.2 6.6 3.9 2 1 1 4 4 4 0 Intermediate filament protein OEP PF02321.13 gi|336476792|ref|YP_004615933.1| - 0.3 10.6 12.0 0.25 10.9 1.0 2.8 3 0 0 3 3 3 0 Outer membrane efflux protein Reo_sigmaC PF04582.7 gi|336476792|ref|YP_004615933.1| - 0.33 10.0 9.2 0.98 8.5 0.2 3.2 1 1 2 4 4 4 0 Reovirus sigma C capsid protein DUF4407 PF14362.1 gi|336476792|ref|YP_004615933.1| - 1.4 7.7 14.6 1.1 8.1 0.9 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4407) Syntaxin-6_N PF09177.6 gi|336476792|ref|YP_004615933.1| - 1.7 9.1 30.7 0.32 11.4 5.1 5.2 3 2 2 5 5 5 0 Syntaxin 6, N-terminal DUF342 PF03961.8 gi|336476792|ref|YP_004615933.1| - 3 6.1 40.8 0.044 12.1 6.8 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF342) Allexi_40kDa PF05549.6 gi|336476792|ref|YP_004615933.1| - 3.7 6.7 25.2 0.42 9.8 4.0 3.3 3 1 0 3 3 3 0 Allexivirus 40kDa protein DUF1664 PF07889.7 gi|336476792|ref|YP_004615933.1| - 4 7.2 28.9 0.46 10.2 1.5 4.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) DUF1411 PF07199.6 gi|336476792|ref|YP_004615933.1| - 4.5 6.6 12.9 4.3 6.7 0.8 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1411) IncA PF04156.9 gi|336476792|ref|YP_004615933.1| - 4.8 6.7 45.3 0.71 9.4 8.3 4.4 3 2 1 4 4 4 0 IncA protein DUF2730 PF10805.3 gi|336476792|ref|YP_004615933.1| - 6.4 6.5 19.2 0.77 9.5 1.9 4.5 3 2 0 3 3 3 0 Protein of unknown function (DUF2730) DUF883 PF05957.8 gi|336476792|ref|YP_004615933.1| - 7.5 7.0 13.2 1 9.7 0.1 4.6 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF883) Fez1 PF06818.10 gi|336476792|ref|YP_004615933.1| - 9.8 6.1 27.0 0.2 11.6 3.8 3.0 2 1 0 3 3 3 0 Fez1 DUF1342 PF07072.6 gi|336476792|ref|YP_004615933.1| - 9.9 5.7 21.5 0.081 12.5 3.8 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF1342) MCR_beta PF02241.13 gi|336476793|ref|YP_004615934.1| - 8.7e-126 418.3 6.3 1.5e-125 417.5 4.3 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|336476793|ref|YP_004615934.1| - 2.8e-79 264.8 3.9 4.4e-79 264.1 2.7 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.9 gi|336476794|ref|YP_004615935.1| - 6.4e-49 165.4 0.0 7.3e-49 165.2 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.7 gi|336476795|ref|YP_004615936.1| - 3.9e-41 140.6 7.5 2.9e-36 124.6 0.4 3.0 1 1 2 3 3 3 3 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.11 gi|336476796|ref|YP_004615937.1| - 3.5e-125 416.1 0.1 4e-125 415.9 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.10 gi|336476797|ref|YP_004615938.1| - 1.8e-141 470.0 0.1 2.3e-141 469.6 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|336476797|ref|YP_004615938.1| - 2.4e-66 221.5 4.2 6e-66 220.2 2.9 1.7 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.5 gi|336476797|ref|YP_004615938.1| - 0.051 13.6 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 BofC C-terminal domain Hexokinase_1 PF00349.16 gi|336476797|ref|YP_004615938.1| - 0.14 11.5 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Hexokinase EPSP_synthase PF00275.15 gi|336476798|ref|YP_004615939.1| - 3.7e-113 378.1 0.5 4.6e-113 377.8 0.3 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thymidylat_synt PF00303.14 gi|336476799|ref|YP_004615940.1| - 5.4e-39 133.8 0.1 1.1e-36 126.2 0.0 2.0 1 1 1 2 2 2 2 Thymidylate synthase Peptidase_M48 PF01435.13 gi|336476800|ref|YP_004615941.1| - 5e-38 130.9 0.1 6.2e-38 130.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336476800|ref|YP_004615941.1| - 4.4e-05 22.6 0.3 8.9e-05 21.6 0.2 1.6 1 1 0 1 1 1 1 BlaR1 peptidase M56 BSP PF04450.7 gi|336476800|ref|YP_004615941.1| - 0.1 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF1282 PF06930.7 gi|336476800|ref|YP_004615941.1| - 0.47 10.0 8.6 0.09 12.4 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) MSC PF09402.5 gi|336476802|ref|YP_004615943.1| - 0.26 9.9 8.0 0.39 9.3 0.0 2.6 2 1 1 3 3 3 0 Man1-Src1p-C-terminal domain PIG-P PF08510.7 gi|336476802|ref|YP_004615943.1| - 0.82 9.3 4.0 0.83 9.2 0.8 2.6 2 1 0 2 2 2 0 PIG-P Autotrns_rpt PF12951.2 gi|336476802|ref|YP_004615943.1| - 1 9.1 4.4 13 5.5 0.4 2.3 2 0 0 2 2 2 0 Autotransporter-associated beta strand repeat Activator-TraM PF11657.3 gi|336476803|ref|YP_004615944.1| - 0.048 13.1 4.5 0.18 11.2 0.4 3.0 2 1 0 2 2 2 0 Transcriptional activator TraM MarR PF01047.17 gi|336476804|ref|YP_004615945.1| - 1.3e-06 27.9 0.1 2.1e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336476804|ref|YP_004615945.1| - 2.9e-06 26.5 0.4 4.9e-06 25.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336476804|ref|YP_004615945.1| - 6e-05 22.6 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|336476804|ref|YP_004615945.1| - 0.0017 18.0 0.2 0.0031 17.1 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Fe_dep_repress PF01325.14 gi|336476804|ref|YP_004615945.1| - 0.0017 18.2 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Ni_hydr_CYTB PF01292.15 gi|336476804|ref|YP_004615945.1| - 0.0019 17.6 0.3 0.031 13.6 0.2 2.0 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 HTH_27 PF13463.1 gi|336476804|ref|YP_004615945.1| - 0.0028 17.9 0.0 0.0059 16.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|336476804|ref|YP_004615945.1| - 0.0031 17.1 0.0 0.0065 16.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336476804|ref|YP_004615945.1| - 0.0083 15.6 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Chordopox_G3 PF06129.7 gi|336476804|ref|YP_004615945.1| - 0.023 14.8 0.0 0.023 14.8 0.0 1.7 2 0 0 2 2 1 0 Chordopoxvirus G3 protein CarboxypepD_reg PF13620.1 gi|336476804|ref|YP_004615945.1| - 0.024 14.6 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain EAP30 PF04157.11 gi|336476804|ref|YP_004615945.1| - 0.04 13.0 0.1 0.06 12.4 0.1 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_Crp_2 PF13545.1 gi|336476804|ref|YP_004615945.1| - 0.046 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|336476804|ref|YP_004615945.1| - 0.056 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336476804|ref|YP_004615945.1| - 0.068 13.2 0.1 0.17 12.0 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF843 PF05814.6 gi|336476804|ref|YP_004615945.1| - 0.074 12.8 0.1 0.32 10.8 0.0 2.0 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) UPF0542 PF15086.1 gi|336476804|ref|YP_004615945.1| - 0.077 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 Reticulon PF02453.12 gi|336476804|ref|YP_004615945.1| - 0.08 12.5 0.5 0.21 11.2 0.0 1.9 2 1 0 2 2 2 0 Reticulon MreD PF04093.7 gi|336476804|ref|YP_004615945.1| - 0.12 12.2 0.2 0.12 12.2 0.2 1.8 2 0 0 2 2 2 0 rod shape-determining protein MreD Phage_Gp23 PF10669.4 gi|336476804|ref|YP_004615945.1| - 0.25 11.4 1.4 0.69 10.0 0.1 2.2 1 1 1 2 2 2 0 Protein gp23 (Bacteriophage A118) Glyoxalase_2 PF12681.2 gi|336476805|ref|YP_004615946.1| - 0.13 12.8 0.0 0.2 12.2 0.0 1.3 1 0 0 1 1 1 0 Glyoxalase-like domain Homoserine_dh PF00742.14 gi|336476806|ref|YP_004615947.1| - 4.6e-59 199.0 0.4 9.2e-58 194.8 0.1 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|336476806|ref|YP_004615947.1| - 2.6e-10 40.7 0.4 2.6e-10 40.7 0.3 1.7 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|336476806|ref|YP_004615947.1| - 1.2e-05 25.0 0.3 2.8e-05 23.8 0.2 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|336476806|ref|YP_004615947.1| - 0.011 14.6 0.2 0.021 13.7 0.1 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase Gp_dh_N PF00044.19 gi|336476806|ref|YP_004615947.1| - 0.054 13.4 1.4 0.25 11.2 0.7 2.2 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DNA_ligase_A_M PF01068.16 gi|336476807|ref|YP_004615948.1| - 1.6e-55 187.6 0.1 2.7e-55 186.8 0.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|336476807|ref|YP_004615948.1| - 6.9e-45 153.0 0.1 1.2e-44 152.2 0.1 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|336476807|ref|YP_004615948.1| - 4.5e-18 65.4 0.0 1.2e-17 64.1 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region GCIP PF13324.1 gi|336476807|ref|YP_004615948.1| - 0.086 12.0 0.3 0.15 11.2 0.2 1.3 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting DUF493 PF04359.9 gi|336476807|ref|YP_004615948.1| - 0.086 13.2 0.1 0.35 11.2 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF493) DUF2111 PF09884.4 gi|336476808|ref|YP_004615949.1| - 2.2e-35 120.3 0.1 3.5e-35 119.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) DUF2124 PF09897.4 gi|336476809|ref|YP_004615950.1| - 1.9e-48 163.8 0.0 2.2e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Adeno_IVa2 PF02456.10 gi|336476809|ref|YP_004615950.1| - 0.11 11.1 0.1 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF1059 PF06348.6 gi|336476810|ref|YP_004615951.1| - 3.2e-08 33.2 0.4 4.8e-08 32.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) APG17 PF04108.7 gi|336476810|ref|YP_004615951.1| - 0.062 12.0 0.5 0.073 11.8 0.3 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 PAS_3 PF08447.6 gi|336476810|ref|YP_004615951.1| - 0.082 13.0 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 PAS fold RsbU_N PF08673.5 gi|336476810|ref|YP_004615951.1| - 0.1 12.6 0.1 0.13 12.3 0.1 1.1 1 0 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain DEAD PF00270.24 gi|336476811|ref|YP_004615952.1| - 9.6e-50 168.3 0.6 1.7e-46 157.7 0.1 2.1 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336476811|ref|YP_004615952.1| - 1.4e-26 92.1 0.1 3.3e-26 90.9 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1253 PF06862.7 gi|336476811|ref|YP_004615952.1| - 1.5e-05 23.6 0.2 0.019 13.4 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF1253) ResIII PF04851.10 gi|336476811|ref|YP_004615952.1| - 0.00017 21.5 0.0 0.00017 21.5 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.1 gi|336476811|ref|YP_004615952.1| - 0.00026 20.9 0.0 0.00099 19.0 0.0 2.0 2 0 0 2 2 2 1 Helicase C-terminal domain Flavi_DEAD PF07652.9 gi|336476811|ref|YP_004615952.1| - 0.0058 16.3 0.0 0.99 9.1 0.0 2.7 2 1 0 2 2 2 1 Flavivirus DEAD domain ATP12 PF07542.6 gi|336476811|ref|YP_004615952.1| - 0.021 14.7 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 ATP12 chaperone protein Ubie_methyltran PF01209.13 gi|336476812|ref|YP_004615953.1| - 5.6e-24 84.5 0.0 9.2e-24 83.8 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|336476812|ref|YP_004615953.1| - 4.2e-23 81.6 0.0 7.1e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476812|ref|YP_004615953.1| - 1.2e-20 73.6 0.0 2.5e-20 72.5 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336476812|ref|YP_004615953.1| - 2.1e-17 63.7 0.0 3.2e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336476812|ref|YP_004615953.1| - 3.8e-16 59.2 0.0 6.4e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476812|ref|YP_004615953.1| - 5e-15 55.7 0.0 8.1e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336476812|ref|YP_004615953.1| - 9.8e-14 51.3 0.0 1.3e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|336476812|ref|YP_004615953.1| - 1.5e-10 40.6 0.0 2.1e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|336476812|ref|YP_004615953.1| - 3.9e-10 39.3 0.0 6.9e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|336476812|ref|YP_004615953.1| - 4e-10 39.7 0.0 8e-10 38.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336476812|ref|YP_004615953.1| - 3.5e-09 36.4 0.0 4.9e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|336476812|ref|YP_004615953.1| - 2.4e-05 24.3 0.1 0.0014 18.6 0.0 2.1 1 1 1 2 2 2 1 FtsJ-like methyltransferase CheR PF01739.13 gi|336476812|ref|YP_004615953.1| - 9.9e-05 21.7 0.1 0.013 14.7 0.0 2.4 1 1 0 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_2 PF00891.13 gi|336476812|ref|YP_004615953.1| - 0.0001 21.6 0.0 0.00013 21.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.13 gi|336476812|ref|YP_004615953.1| - 0.00015 21.3 0.0 0.00028 20.5 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|336476812|ref|YP_004615953.1| - 0.00022 20.4 0.0 0.00035 19.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|336476812|ref|YP_004615953.1| - 0.00031 20.4 0.0 0.00038 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|336476812|ref|YP_004615953.1| - 0.00058 18.9 0.0 0.00091 18.3 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_4 PF02390.12 gi|336476812|ref|YP_004615953.1| - 0.00063 18.8 0.0 0.0012 17.9 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase GCD14 PF08704.5 gi|336476812|ref|YP_004615953.1| - 0.00064 19.2 0.0 0.00088 18.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|336476812|ref|YP_004615953.1| - 0.00083 18.4 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|336476812|ref|YP_004615953.1| - 0.0011 18.5 0.1 0.0053 16.3 0.0 1.9 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_5 PF01795.14 gi|336476812|ref|YP_004615953.1| - 0.0012 18.2 0.0 0.71 9.0 0.0 2.1 2 0 0 2 2 2 2 MraW methylase family NodS PF05401.6 gi|336476812|ref|YP_004615953.1| - 0.0021 17.4 0.0 0.0029 17.0 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|336476812|ref|YP_004615953.1| - 0.0024 17.3 0.0 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|336476812|ref|YP_004615953.1| - 0.0027 16.9 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_PK PF05891.7 gi|336476812|ref|YP_004615953.1| - 0.0029 16.9 0.0 0.0036 16.6 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase DOT1 PF08123.8 gi|336476812|ref|YP_004615953.1| - 0.015 14.6 0.1 0.03 13.6 0.0 1.5 1 1 0 1 1 1 0 Histone methylation protein DOT1 TPMT PF05724.6 gi|336476812|ref|YP_004615953.1| - 0.025 14.0 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) N6_N4_Mtase PF01555.13 gi|336476812|ref|YP_004615953.1| - 0.059 12.8 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Methyltransf_9 PF08003.6 gi|336476812|ref|YP_004615953.1| - 0.062 12.0 0.0 0.067 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) CmcI PF04989.7 gi|336476812|ref|YP_004615953.1| - 0.067 12.4 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Cephalosporin hydroxylase ADH_zinc_N PF00107.21 gi|336476812|ref|YP_004615953.1| - 0.081 12.4 0.0 0.33 10.5 0.0 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase RQC PF09382.5 gi|336476813|ref|YP_004615954.1| - 6.8e-26 90.0 0.4 3.5e-25 87.7 0.0 2.5 3 0 0 3 3 3 1 RQC domain DEAD PF00270.24 gi|336476813|ref|YP_004615954.1| - 5e-25 87.9 0.0 7e-23 80.9 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase HRDC PF00570.18 gi|336476813|ref|YP_004615954.1| - 2.8e-23 81.3 0.0 1.6e-22 78.9 0.0 2.2 2 0 0 2 2 2 1 HRDC domain Helicase_C PF00271.26 gi|336476813|ref|YP_004615954.1| - 2.4e-19 68.9 0.5 1.1e-18 66.8 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain Helicase_Sgs1 PF11408.3 gi|336476813|ref|YP_004615954.1| - 0.00012 21.7 0.0 0.00037 20.2 0.0 1.8 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.10 gi|336476813|ref|YP_004615954.1| - 0.00026 20.8 0.0 0.0014 18.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Sm_multidrug_ex PF06695.6 gi|336476814|ref|YP_004615955.1| - 2.7e-06 27.5 0.7 2.7e-06 27.5 0.5 1.7 1 1 0 1 1 1 1 Putative small multi-drug export protein TraG_N PF07916.6 gi|336476814|ref|YP_004615955.1| - 3.2 6.0 9.5 0.038 12.4 0.2 1.8 2 0 0 2 2 2 0 TraG-like protein, N-terminal region Sm_multidrug_ex PF06695.6 gi|336476815|ref|YP_004615956.1| - 0.0028 17.8 0.5 0.0068 16.5 0.3 1.9 1 1 0 1 1 1 1 Putative small multi-drug export protein DUF2298 PF10060.4 gi|336476816|ref|YP_004615957.1| - 0.019 13.8 1.2 0.024 13.4 0.8 1.2 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) Lamp PF01299.12 gi|336476816|ref|YP_004615957.1| - 0.17 11.0 0.5 0.25 10.4 0.3 1.2 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) Romo1 PF10247.4 gi|336476816|ref|YP_004615957.1| - 0.5 10.5 4.1 1.4 9.1 2.8 1.9 1 1 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 Gly-zipper_YMGG PF13441.1 gi|336476816|ref|YP_004615957.1| - 1.1 8.8 10.4 4.3 6.9 7.2 2.0 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF456 PF04306.8 gi|336476816|ref|YP_004615957.1| - 1.7 8.6 14.1 3.2 7.7 9.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF456) COX14 PF14880.1 gi|336476816|ref|YP_004615957.1| - 1.7 8.3 5.2 1.6 8.4 0.3 2.3 2 0 0 2 2 2 0 Cytochrome oxidase c assembly Gly-zipper_Omp PF13488.1 gi|336476816|ref|YP_004615957.1| - 2.8 7.6 13.0 2.4 7.8 5.5 2.4 2 1 1 3 3 3 0 Glycine zipper Gly-zipper_OmpA PF13436.1 gi|336476816|ref|YP_004615957.1| - 4.8 6.8 5.9 3 7.5 2.8 1.7 1 1 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain CMD PF02627.15 gi|336476817|ref|YP_004615958.1| - 7e-10 38.6 0.0 8.2e-10 38.4 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MacB_PCD PF12704.2 gi|336476818|ref|YP_004615959.1| - 4.8e-38 131.0 4.5 4.8e-38 131.0 3.1 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336476818|ref|YP_004615959.1| - 9e-22 77.1 18.6 4.1e-21 74.9 9.8 2.2 2 0 0 2 2 2 2 FtsX-like permease family Sm_multidrug_ex PF06695.6 gi|336476819|ref|YP_004615960.1| - 0.0051 16.9 0.3 0.0051 16.9 0.2 1.8 1 1 1 2 2 2 1 Putative small multi-drug export protein TraQ PF09679.5 gi|336476819|ref|YP_004615960.1| - 0.11 12.4 0.3 0.11 12.4 0.2 2.0 2 1 1 3 3 3 0 Type-F conjugative transfer system pilin chaperone (TraQ) SPW PF03779.9 gi|336476819|ref|YP_004615960.1| - 0.19 11.1 0.3 0.19 11.1 0.2 2.8 2 0 0 2 2 2 0 SPW repeat DUF3149 PF11346.3 gi|336476820|ref|YP_004615961.1| - 9.6 5.8 9.2 3 7.4 0.5 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3149) PKD PF00801.15 gi|336476821|ref|YP_004615962.1| - 6.1e-38 128.4 19.6 9.4e-19 66.9 3.3 3.4 3 0 0 3 3 3 3 PKD domain Cupredoxin_1 PF13473.1 gi|336476821|ref|YP_004615962.1| - 1.2e-07 31.5 0.1 9.7e-07 28.6 0.0 2.4 2 1 1 3 3 3 1 Cupredoxin-like domain Y_Y_Y PF07495.8 gi|336476821|ref|YP_004615962.1| - 0.00025 20.7 3.7 0.022 14.5 0.1 3.4 3 0 0 3 3 3 1 Y_Y_Y domain Copper-bind PF00127.15 gi|336476821|ref|YP_004615962.1| - 0.00031 20.8 0.1 0.0077 16.4 0.0 2.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family ChitinaseA_N PF08329.5 gi|336476821|ref|YP_004615962.1| - 0.0036 17.0 0.3 16 5.2 0.0 3.2 3 0 0 3 3 3 0 Chitinase A, N-terminal domain Phage-tail_3 PF13550.1 gi|336476821|ref|YP_004615962.1| - 0.031 14.0 0.2 4.8 6.9 0.0 2.9 2 1 0 3 3 3 0 Putative phage tail protein He_PIG PF05345.7 gi|336476821|ref|YP_004615962.1| - 0.038 14.0 16.7 0.54 10.3 2.4 4.2 3 1 0 3 3 3 0 Putative Ig domain FlgD_ig PF13860.1 gi|336476821|ref|YP_004615962.1| - 0.078 12.7 4.0 0.36 10.5 0.1 3.3 1 1 3 4 4 4 0 FlgD Ig-like domain Cadherin PF00028.12 gi|336476821|ref|YP_004615962.1| - 0.24 11.6 4.3 7.1 6.9 0.2 3.4 3 1 0 3 3 3 0 Cadherin domain Ig_2 PF13895.1 gi|336476821|ref|YP_004615962.1| - 0.27 11.4 6.6 1.9 8.6 0.5 3.1 3 0 0 3 3 3 0 Immunoglobulin domain FctA PF12892.2 gi|336476821|ref|YP_004615962.1| - 0.36 11.6 5.6 0.53 11.1 0.5 2.5 1 1 0 2 2 2 0 T surface-antigen of pili Big_3_4 PF13754.1 gi|336476821|ref|YP_004615962.1| - 1.2 9.4 26.2 2.5 8.5 1.2 4.9 2 2 2 5 5 5 0 Bacterial Ig-like domain (group 3) DUF11 PF01345.13 gi|336476821|ref|YP_004615962.1| - 2.3 8.3 8.2 25 4.9 0.3 3.4 3 0 0 3 3 3 0 Domain of unknown function DUF11 DUF4203 PF13886.1 gi|336476822|ref|YP_004615963.1| - 0.24 10.8 8.8 0.24 10.8 6.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) BTP PF05232.7 gi|336476822|ref|YP_004615963.1| - 0.84 9.4 5.1 1 9.1 3.5 1.1 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family BaxI_1 PF12811.2 gi|336476822|ref|YP_004615963.1| - 1.2 8.1 6.9 1.3 8.0 4.8 1.0 1 0 0 1 1 1 0 Bax inhibitor 1 like TrbL PF04610.9 gi|336476822|ref|YP_004615963.1| - 2.8 7.5 10.2 2.9 7.5 7.1 1.0 1 0 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein DUF4191 PF13829.1 gi|336476822|ref|YP_004615963.1| - 2.9 6.9 5.4 3 6.8 3.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF1469 PF07332.6 gi|336476822|ref|YP_004615963.1| - 3.4 7.4 6.8 4.5 7.0 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF973 PF06157.6 gi|336476822|ref|YP_004615963.1| - 3.7 6.4 9.7 3.9 6.3 6.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) VirB3 PF05101.8 gi|336476822|ref|YP_004615963.1| - 7.3 6.6 5.7 11 6.0 4.0 1.3 1 1 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein bPH_2 PF03703.9 gi|336476823|ref|YP_004615964.1| - 6.3e-17 61.3 0.2 8.5e-17 60.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.6 gi|336476823|ref|YP_004615964.1| - 0.11 12.4 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial PH domain bPH_2 PF03703.9 gi|336476824|ref|YP_004615965.1| - 3.6e-39 132.6 0.7 6.2e-17 61.3 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain DUF4064 PF13273.1 gi|336476824|ref|YP_004615965.1| - 8.2 6.5 12.6 2.3 8.3 2.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) BCCT PF02028.12 gi|336476825|ref|YP_004615966.1| - 2.2e-180 600.0 48.2 2.5e-180 599.9 33.4 1.0 1 0 0 1 1 1 1 BCCT family transporter CBS PF00571.23 gi|336476826|ref|YP_004615967.1| - 1.7e-18 66.1 5.3 5.7e-12 45.2 0.1 2.7 3 1 0 3 3 3 2 CBS domain HTH_3 PF01381.17 gi|336476826|ref|YP_004615967.1| - 7.2e-13 48.1 0.2 1.4e-12 47.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|336476826|ref|YP_004615967.1| - 2.6e-09 37.1 0.0 4.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|336476826|ref|YP_004615967.1| - 5.5e-09 35.9 0.1 1e-08 35.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|336476826|ref|YP_004615967.1| - 0.00043 20.4 0.4 0.0011 19.0 0.0 1.9 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|336476826|ref|YP_004615967.1| - 0.014 15.1 0.1 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336476826|ref|YP_004615967.1| - 0.025 13.9 0.2 0.14 11.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_25 PF13413.1 gi|336476826|ref|YP_004615967.1| - 0.028 14.0 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_5 PF00266.14 gi|336476827|ref|YP_004615968.1| - 8.8e-45 153.0 0.0 1.1e-44 152.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|336476827|ref|YP_004615968.1| - 0.00013 21.2 0.0 0.00022 20.5 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|336476827|ref|YP_004615968.1| - 0.0051 15.1 0.0 0.021 13.1 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|336476827|ref|YP_004615968.1| - 0.019 13.9 0.0 0.039 12.9 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.14 gi|336476828|ref|YP_004615969.1| - 2.3e-20 72.7 0.1 2.6e-20 72.5 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Rab15_effector PF15208.1 gi|336476828|ref|YP_004615969.1| - 0.028 13.8 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Rab15 effector DMRL_synthase PF00885.14 gi|336476829|ref|YP_004615970.1| - 6.7e-33 113.3 0.3 7.3e-33 113.2 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|336476830|ref|YP_004615971.1| - 6.8e-66 222.6 0.0 7.8e-66 222.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336476830|ref|YP_004615971.1| - 0.00012 21.2 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|336476830|ref|YP_004615971.1| - 0.00025 19.4 0.0 0.00054 18.3 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|336476830|ref|YP_004615971.1| - 0.0017 17.1 0.0 0.0036 16.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336476830|ref|YP_004615971.1| - 0.0081 15.2 0.1 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family CTP_transf_2 PF01467.21 gi|336476831|ref|YP_004615972.1| - 8.3e-18 64.9 0.3 1.4e-17 64.1 0.2 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|336476831|ref|YP_004615972.1| - 0.0027 17.3 0.8 0.075 12.6 0.5 2.1 1 1 0 1 1 1 1 FAD synthetase PAS PF00989.19 gi|336476832|ref|YP_004615973.1| - 9.1e-27 93.0 0.0 1.5e-12 47.2 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|336476832|ref|YP_004615973.1| - 9.7e-26 90.1 0.4 4.8e-13 49.3 0.0 4.2 4 1 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|336476832|ref|YP_004615973.1| - 3.7e-25 87.8 0.0 1.1e-24 86.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|336476832|ref|YP_004615973.1| - 4.7e-22 77.8 0.1 8.5e-18 64.2 0.1 3.0 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.5 gi|336476832|ref|YP_004615973.1| - 5e-16 58.7 0.0 1.1e-05 25.4 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|336476832|ref|YP_004615973.1| - 3.6e-14 51.9 0.1 8.8e-07 28.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|336476832|ref|YP_004615973.1| - 6.6e-06 26.0 0.0 0.012 15.5 0.0 2.9 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|336476832|ref|YP_004615973.1| - 0.0015 18.4 1.6 0.0018 18.2 0.2 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|336476832|ref|YP_004615973.1| - 0.0052 16.7 1.2 0.48 10.4 0.0 3.8 3 2 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|336476832|ref|YP_004615973.1| - 0.0089 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|336476833|ref|YP_004615974.1| - 1.8e-41 140.7 0.3 3.3e-13 49.8 0.0 4.3 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|336476833|ref|YP_004615974.1| - 2.9e-39 133.3 0.2 2e-10 40.4 0.0 4.8 5 1 0 5 5 5 4 PAS fold PAS_3 PF08447.6 gi|336476833|ref|YP_004615974.1| - 6.5e-34 115.9 0.4 5e-17 61.7 0.2 4.7 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|336476833|ref|YP_004615974.1| - 9.3e-33 112.2 0.0 1.9e-32 111.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|336476833|ref|YP_004615974.1| - 3.1e-24 83.9 0.0 2.2e-07 30.4 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|336476833|ref|YP_004615974.1| - 2.9e-22 78.8 0.0 0.00021 21.2 0.0 4.8 4 1 0 4 4 4 4 PAS fold HisKA PF00512.20 gi|336476833|ref|YP_004615974.1| - 3e-16 59.1 0.7 1.6e-15 56.8 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|336476833|ref|YP_004615974.1| - 1.3e-08 34.8 0.5 0.011 15.7 0.0 4.6 5 1 0 5 5 5 2 PAS fold PAS_10 PF13596.1 gi|336476833|ref|YP_004615974.1| - 0.0005 20.2 3.1 0.038 14.2 0.0 4.8 3 1 2 6 6 6 1 PAS domain PAS_11 PF14598.1 gi|336476833|ref|YP_004615974.1| - 0.00056 19.8 0.1 3 7.8 0.0 3.9 4 0 0 4 4 4 1 PAS domain Rho_Binding PF08912.6 gi|336476833|ref|YP_004615974.1| - 2.5 8.4 9.1 1.4 9.2 1.1 3.5 3 0 0 3 3 3 0 Rho Binding DASH_Dad4 PF08650.5 gi|336476833|ref|YP_004615974.1| - 7.9 6.4 7.3 52 3.8 0.0 3.7 4 0 0 4 4 4 0 DASH complex subunit Dad4 DUF39 PF01837.11 gi|336476834|ref|YP_004615975.1| - 3.6e-153 509.1 1.0 4.5e-153 508.8 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|336476834|ref|YP_004615975.1| - 1.4e-27 95.2 2.0 2.5e-13 49.5 0.3 2.7 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|336476835|ref|YP_004615976.1| - 4.3e-18 64.0 13.0 7.2e-10 38.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476835|ref|YP_004615976.1| - 4.2e-15 55.8 22.2 1e-11 45.0 7.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476835|ref|YP_004615976.1| - 1.2e-13 51.1 22.2 6.7e-10 39.0 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476835|ref|YP_004615976.1| - 1.9e-12 46.3 14.3 1.7e-06 27.6 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336476835|ref|YP_004615976.1| - 1.5e-11 43.8 27.1 2.3e-08 33.6 10.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476835|ref|YP_004615976.1| - 2.5e-10 39.7 14.2 4.3e-05 23.1 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476835|ref|YP_004615976.1| - 2.7e-10 40.0 4.3 6.9e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476835|ref|YP_004615976.1| - 2.4e-09 37.8 9.5 0.00025 21.7 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|336476835|ref|YP_004615976.1| - 1.4e-08 34.9 12.7 0.0006 20.1 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|336476835|ref|YP_004615976.1| - 5.9e-08 32.4 15.4 0.00069 19.4 2.7 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336476835|ref|YP_004615976.1| - 4.7e-07 29.6 13.7 0.00079 19.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336476835|ref|YP_004615976.1| - 5.7e-07 29.8 14.4 0.00029 21.1 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336476835|ref|YP_004615976.1| - 3.5e-05 24.0 19.9 0.014 15.8 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476835|ref|YP_004615976.1| - 7.7e-05 22.9 13.6 0.055 13.8 1.4 2.2 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336476835|ref|YP_004615976.1| - 9.4e-05 22.8 16.5 0.017 15.6 2.7 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|336476835|ref|YP_004615976.1| - 9.5e-05 22.2 4.1 0.00067 19.5 2.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain NIL PF09383.5 gi|336476835|ref|YP_004615976.1| - 0.0031 17.0 0.2 0.0041 16.6 0.2 1.2 1 0 0 1 1 1 1 NIL domain c-SKI_SMAD_bind PF08782.5 gi|336476835|ref|YP_004615976.1| - 1.1 9.3 9.3 2.8 8.1 1.3 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain ApbE PF02424.10 gi|336476836|ref|YP_004615977.1| - 4e-19 68.8 0.7 7.2e-19 68.0 0.2 1.6 2 0 0 2 2 2 1 ApbE family DisA_N PF02457.11 gi|336476836|ref|YP_004615977.1| - 0.019 14.0 0.1 0.042 12.9 0.1 1.5 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding UPF0118 PF01594.11 gi|336476837|ref|YP_004615978.1| - 1e-40 139.7 52.7 1.3e-40 139.4 36.5 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 MacB_PCD PF12704.2 gi|336476837|ref|YP_004615978.1| - 7.5 6.0 6.2 25 4.3 0.8 2.6 2 0 0 2 2 2 0 MacB-like periplasmic core domain URO-D PF01208.12 gi|336476838|ref|YP_004615979.1| - 1.4e-77 260.9 0.0 1.7e-77 260.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF2154 PF09922.4 gi|336476839|ref|YP_004615980.1| - 1.9e-13 50.0 0.3 3.6e-13 49.2 0.2 1.5 1 0 0 1 1 1 1 Cell wall-active antibiotics response protein (DUF2154) Herpes_LMP1 PF05297.6 gi|336476839|ref|YP_004615980.1| - 0.016 14.1 6.2 0.021 13.7 4.3 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DPM3 PF08285.6 gi|336476839|ref|YP_004615980.1| - 0.93 9.3 8.6 1.9 8.3 0.3 2.7 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF45 PF01863.12 gi|336476840|ref|YP_004615981.1| - 1.2e-56 191.7 0.5 1.5e-56 191.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|336476840|ref|YP_004615981.1| - 5.1e-07 29.7 0.2 1.1e-06 28.6 0.2 1.5 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|336476840|ref|YP_004615981.1| - 0.021 14.4 0.1 0.047 13.3 0.0 1.6 2 0 0 2 2 2 0 SprT-like family AMP-binding PF00501.23 gi|336476841|ref|YP_004615982.1| - 2.1e-83 280.0 0.0 3.1e-83 279.5 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336476841|ref|YP_004615982.1| - 9.4e-18 64.9 0.3 2.4e-17 63.6 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|336476842|ref|YP_004615983.1| - 1.8e-11 44.2 8.2 2.4e-11 43.8 5.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476842|ref|YP_004615983.1| - 4.5e-08 32.7 21.5 2.4e-06 27.2 8.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336476842|ref|YP_004615983.1| - 2.8e-07 30.2 18.1 2.2e-06 27.4 5.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336476842|ref|YP_004615983.1| - 1.4e-06 28.1 9.6 2.8e-06 27.2 6.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336476842|ref|YP_004615983.1| - 2.1e-06 27.0 16.3 0.0022 17.5 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336476842|ref|YP_004615983.1| - 2.5e-06 27.6 12.4 1.3e-05 25.3 8.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336476842|ref|YP_004615983.1| - 3.3e-06 26.6 13.4 0.00085 19.0 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476842|ref|YP_004615983.1| - 1.1e-05 25.6 11.4 0.0087 16.3 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476842|ref|YP_004615983.1| - 2.5e-05 23.9 15.5 0.016 15.0 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336476842|ref|YP_004615983.1| - 2.8e-05 24.4 7.1 0.034 14.5 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476842|ref|YP_004615983.1| - 4.4e-05 24.1 11.1 0.0076 16.9 7.9 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|336476842|ref|YP_004615983.1| - 0.00092 19.3 16.4 0.009 16.2 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336476842|ref|YP_004615983.1| - 0.0015 19.0 10.4 0.14 12.7 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|336476842|ref|YP_004615983.1| - 0.012 15.9 7.0 0.18 12.1 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain CGGC PF08821.6 gi|336476842|ref|YP_004615983.1| - 0.031 14.3 1.1 0.037 14.0 0.8 1.1 1 0 0 1 1 1 0 CGGC domain Fer4_3 PF12798.2 gi|336476842|ref|YP_004615983.1| - 0.13 12.9 18.4 0.31 11.7 3.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_S26e PF01283.14 gi|336476842|ref|YP_004615983.1| - 2.2 8.5 4.0 2.7 8.2 0.7 2.0 1 1 1 2 2 2 0 Ribosomal protein S26e DUF3505 PF12013.3 gi|336476842|ref|YP_004615983.1| - 3.1 8.0 6.1 3.1 8.0 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3505) POR_N PF01855.14 gi|336476843|ref|YP_004615984.1| - 2.4e-60 203.9 0.0 3e-60 203.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|336476843|ref|YP_004615984.1| - 0.00068 19.1 0.1 0.001 18.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|336476843|ref|YP_004615984.1| - 0.0019 18.1 0.0 0.0034 17.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain POR PF01558.13 gi|336476844|ref|YP_004615985.1| - 1.6e-39 135.5 0.0 3e-39 134.6 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|336476844|ref|YP_004615985.1| - 4.8e-24 84.6 1.0 6.4e-24 84.2 0.2 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMP-binding PF00501.23 gi|336476845|ref|YP_004615986.1| - 2e-105 352.5 0.0 2.4e-105 352.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336476845|ref|YP_004615986.1| - 5.3e-15 56.1 0.0 1.1e-14 55.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2249 PF10006.4 gi|336476845|ref|YP_004615986.1| - 0.099 12.2 0.0 7.1 6.2 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2249) 4HBT_2 PF13279.1 gi|336476846|ref|YP_004615987.1| - 1.7e-13 51.0 0.0 2e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|336476846|ref|YP_004615987.1| - 1.6e-08 34.5 0.0 2.7e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|336476846|ref|YP_004615987.1| - 0.00024 20.1 0.2 0.044 12.7 0.0 2.1 2 0 0 2 2 2 2 Acyl-ACP thioesterase Cupin_2 PF07883.6 gi|336476847|ref|YP_004615988.1| - 5.7e-16 57.7 0.0 9.2e-16 57.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|336476847|ref|YP_004615988.1| - 1.8e-05 24.6 0.0 3.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|336476847|ref|YP_004615988.1| - 3e-05 24.1 0.0 4.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|336476847|ref|YP_004615988.1| - 0.00089 18.9 0.2 0.0021 17.7 0.0 1.6 2 0 0 2 2 2 1 AraC-like ligand binding domain HTH_3 PF01381.17 gi|336476847|ref|YP_004615988.1| - 0.0011 18.7 0.1 0.0024 17.6 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix Cupin_3 PF05899.7 gi|336476847|ref|YP_004615988.1| - 0.004 16.5 0.0 0.0074 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_25 PF13413.1 gi|336476847|ref|YP_004615988.1| - 0.0077 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_1 PF00190.17 gi|336476847|ref|YP_004615988.1| - 0.065 12.6 0.0 0.16 11.4 0.0 1.9 1 1 0 1 1 1 0 Cupin MannoseP_isomer PF01050.13 gi|336476847|ref|YP_004615988.1| - 0.074 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Hexapep PF00132.19 gi|336476848|ref|YP_004615989.1| - 7.6e-22 75.7 16.4 3.7e-08 32.5 0.2 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336476848|ref|YP_004615989.1| - 6.7e-06 25.5 19.4 0.0019 17.7 2.8 4.3 2 2 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase Na_H_Exchanger PF00999.16 gi|336476849|ref|YP_004615990.1| - 2.1e-32 112.1 22.7 3.3e-32 111.4 15.7 1.3 1 1 0 1 1 1 1 Sodium/hydrogen exchanger family HisKA_2 PF07568.7 gi|336476850|ref|YP_004615991.1| - 2e-31 107.6 2.7 4.3e-31 106.5 1.8 1.6 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|336476850|ref|YP_004615991.1| - 1.1e-20 73.4 0.3 1.1e-19 70.2 0.3 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|336476850|ref|YP_004615991.1| - 5e-10 39.6 0.4 4.8e-06 26.8 0.0 3.4 3 1 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|336476850|ref|YP_004615991.1| - 9.2e-10 38.2 0.2 1.9e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|336476850|ref|YP_004615991.1| - 7.7e-08 32.1 0.3 1.3e-06 28.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold HWE_HK PF07536.9 gi|336476850|ref|YP_004615991.1| - 3.4e-07 30.5 0.3 6.7e-07 29.6 0.2 1.5 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|336476850|ref|YP_004615991.1| - 1.6e-06 27.9 0.0 3.9e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|336476850|ref|YP_004615991.1| - 2.2e-06 27.6 0.0 0.0059 16.6 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336476850|ref|YP_004615991.1| - 5.6e-06 26.0 0.0 0.0052 16.6 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.1 gi|336476850|ref|YP_004615991.1| - 0.00092 19.1 0.2 0.012 15.6 0.0 2.7 3 0 0 3 3 3 1 PAS domain DUF11 PF01345.13 gi|336476851|ref|YP_004615992.1| - 1.4e-14 53.9 26.3 0.0031 17.5 0.4 4.7 4 0 0 4 4 4 4 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|336476851|ref|YP_004615992.1| - 1.7e-05 24.8 7.2 6.9 6.7 0.0 5.5 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|336476851|ref|YP_004615992.1| - 0.00046 20.1 19.6 0.22 11.5 0.1 5.9 5 2 0 5 5 5 4 CARDB Inhibitor_I42 PF09394.5 gi|336476851|ref|YP_004615992.1| - 0.0012 19.1 1.5 2 8.7 0.0 4.5 4 0 0 4 4 4 1 Chagasin family peptidase inhibitor I42 TRAP_beta PF05753.9 gi|336476851|ref|YP_004615992.1| - 0.0029 16.7 6.6 14 4.8 0.1 4.6 4 0 0 4 4 4 3 Translocon-associated protein beta (TRAPB) Glucodextran_N PF09137.6 gi|336476851|ref|YP_004615992.1| - 0.0043 16.3 2.5 1.5 8.0 0.0 3.5 4 0 0 4 4 4 2 Glucodextranase, domain N APT PF03440.9 gi|336476851|ref|YP_004615992.1| - 0.092 12.4 14.2 2.2 8.0 0.2 3.7 4 0 0 4 4 4 0 Aerolysin/Pertussis toxin (APT) domain RL11D PF11088.3 gi|336476851|ref|YP_004615992.1| - 3.4 7.5 14.8 2.8 7.8 0.3 4.9 5 0 0 5 5 5 0 Glycoprotein encoding membrane proteins RL5A and RL6 Diacid_rec PF05651.8 gi|336476851|ref|YP_004615992.1| - 5.2 6.4 6.6 98 2.3 0.1 3.9 3 0 0 3 3 3 0 Putative sugar diacid recognition Sua5_yciO_yrdC PF01300.13 gi|336476852|ref|YP_004615993.1| - 6e-45 152.6 0.0 1.3e-44 151.6 0.0 1.6 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|336476852|ref|YP_004615993.1| - 1.5e-22 78.6 19.8 2e-11 43.0 2.5 2.6 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|336476852|ref|YP_004615993.1| - 8.4e-22 77.0 0.0 1.7e-21 76.1 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|336476852|ref|YP_004615993.1| - 0.00011 21.7 0.0 0.00026 20.6 0.0 1.5 1 0 0 1 1 1 1 Glycoprotease family HycI PF01750.13 gi|336476853|ref|YP_004615994.1| - 5.3e-21 74.5 0.5 6.2e-21 74.3 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.14 gi|336476854|ref|YP_004615995.1| - 3.3e-69 234.0 0.0 7.9e-43 146.9 0.0 3.0 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|336476855|ref|YP_004615996.1| - 5.2e-29 100.5 0.0 8e-29 99.9 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.1 gi|336476855|ref|YP_004615996.1| - 4.1e-27 94.0 4.5 6.9e-26 90.1 1.9 2.4 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal zf-RING_2 PF13639.1 gi|336476855|ref|YP_004615996.1| - 1.2 9.0 4.7 0.44 10.4 0.7 2.2 2 0 0 2 2 2 0 Ring finger domain HupF_HypC PF01455.13 gi|336476856|ref|YP_004615997.1| - 1.2e-20 73.2 0.2 1.3e-20 73.1 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family HypD PF01924.11 gi|336476857|ref|YP_004615998.1| - 3.9e-129 430.4 0.0 4.3e-129 430.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HypA PF01155.14 gi|336476858|ref|YP_004615999.1| - 1.7e-22 79.2 0.3 2.1e-22 78.9 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|336476858|ref|YP_004615999.1| - 0.24 10.6 1.9 0.81 8.9 0.0 2.5 3 0 0 3 3 3 0 zinc-ribbon domain cobW PF02492.14 gi|336476859|ref|YP_004616000.1| - 4.5e-37 127.2 2.2 5.5e-37 126.9 1.6 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|336476859|ref|YP_004616000.1| - 4.1e-06 25.7 0.6 0.00011 21.1 0.4 2.0 1 1 0 1 1 1 1 ArgK protein NB-ARC PF00931.17 gi|336476859|ref|YP_004616000.1| - 0.0013 17.6 0.0 0.0026 16.6 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain MobB PF03205.9 gi|336476859|ref|YP_004616000.1| - 0.0014 18.3 0.5 0.0031 17.2 0.1 1.9 2 2 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|336476859|ref|YP_004616000.1| - 0.0015 18.3 0.0 0.0031 17.2 0.0 1.7 1 1 0 1 1 1 1 NTPase Arch_ATPase PF01637.13 gi|336476859|ref|YP_004616000.1| - 0.0023 17.6 0.1 0.0036 17.0 0.1 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|336476859|ref|YP_004616000.1| - 0.0025 17.7 0.3 0.0054 16.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336476859|ref|YP_004616000.1| - 0.0027 17.8 0.7 0.092 12.9 0.1 2.2 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|336476859|ref|YP_004616000.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain KAP_NTPase PF07693.9 gi|336476859|ref|YP_004616000.1| - 0.015 14.2 0.0 0.019 13.9 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain SRP54 PF00448.17 gi|336476859|ref|YP_004616000.1| - 0.018 14.4 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|336476859|ref|YP_004616000.1| - 0.021 15.1 0.1 0.032 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|336476859|ref|YP_004616000.1| - 0.022 13.6 0.1 0.036 12.9 0.1 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|336476859|ref|YP_004616000.1| - 0.022 14.3 0.0 0.034 13.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|336476859|ref|YP_004616000.1| - 0.024 14.7 0.1 0.065 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|336476859|ref|YP_004616000.1| - 0.038 13.2 0.0 0.075 12.3 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_17 PF13207.1 gi|336476859|ref|YP_004616000.1| - 0.047 14.5 0.1 0.1 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|336476859|ref|YP_004616000.1| - 0.051 13.0 0.1 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|336476859|ref|YP_004616000.1| - 0.063 12.8 0.0 0.36 10.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.1 gi|336476859|ref|YP_004616000.1| - 0.063 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|336476859|ref|YP_004616000.1| - 0.087 13.3 0.3 0.24 11.8 0.2 2.0 1 1 0 1 1 1 0 Miro-like protein AAA_29 PF13555.1 gi|336476859|ref|YP_004616000.1| - 0.091 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.4 gi|336476859|ref|YP_004616000.1| - 0.094 11.3 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.1 gi|336476859|ref|YP_004616000.1| - 0.13 11.8 0.2 0.37 10.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|336476859|ref|YP_004616000.1| - 0.15 11.4 1.7 0.3 10.4 1.1 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_15 PF13175.1 gi|336476859|ref|YP_004616000.1| - 0.16 11.0 2.2 0.18 10.7 1.5 1.1 1 0 0 1 1 1 0 AAA ATPase domain AIRS_C PF02769.17 gi|336476860|ref|YP_004616001.1| - 4e-25 88.6 0.3 5.5e-25 88.1 0.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336476860|ref|YP_004616001.1| - 1.8e-16 60.1 0.1 3.8e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PKD PF00801.15 gi|336476861|ref|YP_004616002.1| - 1.5e-19 69.4 4.2 1.5e-19 69.4 2.9 2.5 2 1 0 2 2 2 2 PKD domain Cupredoxin_1 PF13473.1 gi|336476861|ref|YP_004616002.1| - 1.3e-11 44.3 0.0 1.4e-10 40.9 0.0 2.0 2 0 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|336476861|ref|YP_004616002.1| - 4.2e-07 30.1 1.1 1.2e-05 25.4 0.7 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PspC PF04024.7 gi|336476862|ref|YP_004616003.1| - 2.9e-25 87.5 0.5 3.2e-25 87.3 0.3 1.0 1 0 0 1 1 1 1 PspC domain Potass_KdpF PF09604.5 gi|336476862|ref|YP_004616003.1| - 7 6.6 7.3 0.5 10.2 1.7 1.6 2 0 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) TrmB PF01978.14 gi|336476863|ref|YP_004616004.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Trp_leader1 PF08055.6 gi|336476863|ref|YP_004616004.1| - 0.15 11.5 5.2 0.27 10.7 3.6 1.4 1 0 0 1 1 1 0 Tryptophan leader peptide DUF2551 PF10826.3 gi|336476864|ref|YP_004616005.1| - 1.4e-31 108.1 0.8 1.8e-31 107.8 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|336476864|ref|YP_004616005.1| - 0.00027 21.0 0.1 0.00042 20.4 0.1 1.4 1 1 0 1 1 1 1 Penicillinase repressor DUF2666 PF10869.3 gi|336476864|ref|YP_004616005.1| - 0.08 12.9 0.3 0.11 12.4 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2666) Sod_Fe_C PF02777.13 gi|336476866|ref|YP_004616007.1| - 6.9e-37 125.5 0.2 1.3e-36 124.6 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|336476866|ref|YP_004616007.1| - 1.1e-26 92.8 1.9 3e-26 91.4 1.3 1.7 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain EFhand_Ca_insen PF08726.5 gi|336476866|ref|YP_004616007.1| - 0.071 13.0 0.3 0.14 12.1 0.2 1.5 1 0 0 1 1 1 0 Ca2+ insensitive EF hand S-layer PF07752.6 gi|336476867|ref|YP_004616008.1| - 2e-44 151.7 9.8 3.1e-44 151.1 6.8 1.2 1 0 0 1 1 1 1 S-layer protein Na_H_Exchanger PF00999.16 gi|336476868|ref|YP_004616009.1| - 7.7e-54 182.6 51.2 1.1e-53 182.1 35.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|336476868|ref|YP_004616009.1| - 3.7e-07 30.4 0.0 7.9e-07 29.3 0.0 1.6 2 0 0 2 2 2 1 Universal stress protein family UbiA PF01040.13 gi|336476869|ref|YP_004616010.1| - 1.7e-22 79.8 24.5 1.7e-22 79.8 17.0 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family COX8 PF02285.10 gi|336476869|ref|YP_004616010.1| - 0.0064 15.9 0.6 0.023 14.2 0.4 1.9 1 0 0 1 1 1 1 Cytochrome oxidase c subunit VIII PAP2 PF01569.16 gi|336476870|ref|YP_004616011.1| - 1.9e-09 37.3 8.5 1.9e-09 37.3 5.9 2.9 1 1 2 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336476870|ref|YP_004616011.1| - 3.5e-06 26.6 8.7 3.5e-06 26.6 6.0 1.5 1 1 0 1 1 1 1 PAP2 superfamily Adeno_hexon PF01065.14 gi|336476870|ref|YP_004616011.1| - 0.12 11.1 0.2 0.16 10.7 0.1 1.1 1 0 0 1 1 1 0 Hexon, adenovirus major coat protein, N-terminal domain Lon_2 PF13337.1 gi|336476871|ref|YP_004616012.1| - 3.7e-214 711.2 1.3 4.4e-214 710.9 0.9 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.8 gi|336476871|ref|YP_004616012.1| - 2e-09 37.0 0.0 4.3e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|336476871|ref|YP_004616012.1| - 9.9e-05 21.8 0.8 0.0046 16.4 0.1 2.9 2 1 0 2 2 2 1 Subunit ChlI of Mg-chelatase DUF2762 PF10960.3 gi|336476871|ref|YP_004616012.1| - 0.014 15.1 0.1 0.041 13.6 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2762) DUF1341 PF07071.6 gi|336476871|ref|YP_004616012.1| - 0.074 12.5 0.6 12 5.3 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1341) PglZ PF08665.7 gi|336476872|ref|YP_004616013.1| - 4.2e-47 160.1 1.1 8.5e-47 159.1 0.1 2.0 2 0 0 2 2 2 1 PglZ domain Phosphodiest PF01663.17 gi|336476872|ref|YP_004616013.1| - 0.0042 16.4 1.3 0.0093 15.3 0.9 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase HD PF01966.17 gi|336476873|ref|YP_004616014.1| - 2.9e-14 53.1 0.2 1.4e-13 50.9 0.2 2.2 1 0 0 1 1 1 1 HD domain HD_assoc PF13286.1 gi|336476873|ref|YP_004616014.1| - 5.2e-13 49.0 1.1 6.4e-05 23.1 0.0 3.6 3 0 0 3 3 3 3 Phosphohydrolase-associated domain Methyltransf_26 PF13659.1 gi|336476874|ref|YP_004616015.1| - 1e-15 57.7 0.0 2.2e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|336476874|ref|YP_004616015.1| - 3.7e-14 52.5 0.0 2e-08 33.7 0.0 2.7 2 1 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.6 gi|336476874|ref|YP_004616015.1| - 3.5e-09 36.9 0.3 1.6e-08 34.8 0.2 2.2 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|336476874|ref|YP_004616015.1| - 0.0001 21.9 0.0 0.32 10.5 0.0 2.6 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 HATPase_c_4 PF13749.1 gi|336476875|ref|YP_004616016.1| - 2.2e-26 91.4 0.1 5.1e-26 90.2 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|336476875|ref|YP_004616016.1| - 1.8e-23 82.9 0.0 3.3e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain PadR PF03551.9 gi|336476875|ref|YP_004616016.1| - 0.0031 17.2 0.1 0.0059 16.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HATPase_c_2 PF13581.1 gi|336476875|ref|YP_004616016.1| - 0.013 15.2 0.0 0.031 14.0 0.0 1.7 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain HTH_45 PF14947.1 gi|336476875|ref|YP_004616016.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix C-C_Bond_Lyase PF15617.1 gi|336476875|ref|YP_004616016.1| - 0.085 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold DUF3534 PF12053.3 gi|336476876|ref|YP_004616017.1| - 0.039 13.8 0.8 0.76 9.6 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3534) NACHT PF05729.7 gi|336476876|ref|YP_004616017.1| - 0.077 12.6 0.0 0.75 9.4 0.0 2.4 2 0 0 2 2 2 0 NACHT domain PLDc_2 PF13091.1 gi|336476877|ref|YP_004616018.1| - 1.1e-10 41.3 0.3 1.9e-10 40.5 0.2 1.3 1 0 0 1 1 1 1 PLD-like domain DZR PF12773.2 gi|336476877|ref|YP_004616018.1| - 0.005 16.6 10.5 0.59 9.9 0.8 2.3 1 1 0 2 2 2 2 Double zinc ribbon Regulator_TrmB PF11495.3 gi|336476877|ref|YP_004616018.1| - 0.0055 15.6 0.5 0.011 14.6 0.3 1.6 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF1244 PF06844.6 gi|336476877|ref|YP_004616018.1| - 0.013 15.3 1.5 0.78 9.6 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1244) TerY-C PF15616.1 gi|336476877|ref|YP_004616018.1| - 0.035 14.0 5.1 0.052 13.4 3.2 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain NinF PF05810.7 gi|336476877|ref|YP_004616018.1| - 0.24 11.2 2.4 0.34 10.7 0.1 2.3 1 1 1 2 2 2 0 NinF protein zf-ribbon_3 PF13248.1 gi|336476877|ref|YP_004616018.1| - 0.32 10.2 5.8 4.2 6.7 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rbc25 PF08292.7 gi|336476877|ref|YP_004616018.1| - 1.5 9.0 6.3 5.8 7.1 4.4 1.9 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 zf-C3HC4 PF00097.20 gi|336476877|ref|YP_004616018.1| - 4.1 7.1 14.9 9.9 5.9 6.7 3.1 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SpoIIAA-like PF11964.3 gi|336476878|ref|YP_004616019.1| - 5e-28 97.5 0.2 5.5e-28 97.4 0.1 1.0 1 0 0 1 1 1 1 SpoIIAA-like PEPcase_2 PF14010.1 gi|336476879|ref|YP_004616020.1| - 8.3e-148 492.7 0.1 9.3e-148 492.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|336476879|ref|YP_004616020.1| - 4.9e-06 24.7 0.0 7.6e-06 24.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase GyrI-like PF06445.10 gi|336476880|ref|YP_004616021.1| - 2.3e-27 95.9 0.2 2.5e-27 95.7 0.2 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|336476880|ref|YP_004616021.1| - 3.8e-11 43.1 0.1 4.4e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Integron-associated effector binding protein APH PF01636.18 gi|336476881|ref|YP_004616022.1| - 1.1e-05 25.2 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|336476881|ref|YP_004616022.1| - 0.021 14.1 0.1 1.5 8.1 0.0 2.4 2 1 0 2 2 2 0 RIO1 family DUF422 PF04240.7 gi|336476882|ref|YP_004616023.1| - 8.5e-51 172.3 19.2 9.9e-51 172.1 13.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF422) UbiA PF01040.13 gi|336476883|ref|YP_004616024.1| - 2.9e-23 82.3 23.5 4.1e-23 81.9 16.3 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family SQS_PSY PF00494.14 gi|336476884|ref|YP_004616025.1| - 1.1e-38 133.0 0.0 1.3e-38 132.8 0.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Amino_oxidase PF01593.19 gi|336476885|ref|YP_004616026.1| - 6.8e-29 101.2 0.0 7.9e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|336476885|ref|YP_004616026.1| - 3e-15 56.0 0.0 2.6e-07 29.8 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336476885|ref|YP_004616026.1| - 7.3e-13 48.3 0.1 1.5e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336476885|ref|YP_004616026.1| - 1.1e-09 37.7 0.3 4.3e-09 35.7 0.2 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|336476885|ref|YP_004616026.1| - 2e-07 29.8 0.9 0.00028 19.5 0.2 2.8 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox PF00070.22 gi|336476885|ref|YP_004616026.1| - 1.2e-06 28.8 4.0 0.0013 19.0 0.4 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336476885|ref|YP_004616026.1| - 4.4e-06 26.7 0.0 0.00013 21.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|336476885|ref|YP_004616026.1| - 1e-05 25.0 0.4 6.4e-05 22.4 0.1 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|336476885|ref|YP_004616026.1| - 5.1e-05 22.4 0.4 8.4e-05 21.7 0.2 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|336476885|ref|YP_004616026.1| - 0.00011 22.3 0.1 0.018 15.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|336476885|ref|YP_004616026.1| - 0.00025 20.2 0.0 0.0016 17.5 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336476885|ref|YP_004616026.1| - 0.00031 19.9 0.4 0.00075 18.6 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|336476885|ref|YP_004616026.1| - 0.00079 18.3 0.5 0.0029 16.5 0.2 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|336476885|ref|YP_004616026.1| - 0.001 18.7 0.1 0.0022 17.6 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|336476885|ref|YP_004616026.1| - 0.0018 17.8 0.1 0.0045 16.5 0.1 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|336476885|ref|YP_004616026.1| - 0.017 15.0 0.0 0.043 13.8 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|336476885|ref|YP_004616026.1| - 0.051 13.3 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KMP11 PF03037.11 gi|336476885|ref|YP_004616026.1| - 1.9 9.1 8.6 1.7 9.2 1.4 3.2 3 0 0 3 3 3 0 Kinetoplastid membrane protein 11 DUF1724 PF08350.5 gi|336476886|ref|YP_004616027.1| - 6.4e-14 51.2 0.4 1.2e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Imm24 PF15570.1 gi|336476886|ref|YP_004616027.1| - 0.0051 16.5 1.5 0.014 15.0 0.2 2.3 2 0 0 2 2 2 1 Immunity protein 24 DUF947 PF06102.7 gi|336476886|ref|YP_004616027.1| - 0.062 13.1 0.2 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF947) Beta_helix PF13229.1 gi|336476887|ref|YP_004616028.1| - 1.2e-22 80.4 59.9 3.1e-12 46.5 19.0 3.1 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.8 gi|336476887|ref|YP_004616028.1| - 1.1e-11 44.4 50.3 12 4.9 34.8 3.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) YajC PF02699.10 gi|336476887|ref|YP_004616028.1| - 0.73 9.5 3.5 1.8 8.2 0.1 2.9 3 0 0 3 3 3 0 Preprotein translocase subunit PEMT PF04191.8 gi|336476888|ref|YP_004616029.1| - 2.3e-17 63.0 3.4 2.3e-17 63.0 2.3 2.3 2 1 2 4 4 4 1 Phospholipid methyltransferase Plasmid_stabil PF05016.9 gi|336476890|ref|YP_004616031.1| - 1.1e-08 35.3 0.0 1.4e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|336476890|ref|YP_004616031.1| - 0.091 12.7 0.1 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) ChaB PF06150.7 gi|336476891|ref|YP_004616032.1| - 1.5e-25 88.7 3.8 1.7e-25 88.5 2.7 1.1 1 0 0 1 1 1 1 ChaB Toxin_45 PF15524.1 gi|336476891|ref|YP_004616032.1| - 0.051 13.6 0.3 0.059 13.5 0.2 1.2 1 0 0 1 1 1 0 Putative toxin 45 RNase_T PF00929.19 gi|336476892|ref|YP_004616033.1| - 1.1e-19 71.2 0.0 1.5e-19 70.8 0.0 1.2 1 0 0 1 1 1 1 Exonuclease RNase_H_2 PF13482.1 gi|336476892|ref|YP_004616033.1| - 6.1e-05 22.8 0.8 0.0013 18.5 0.5 2.1 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|336476892|ref|YP_004616033.1| - 0.027 13.3 0.1 0.067 12.0 0.0 1.6 2 0 0 2 2 2 0 DNA polymerase family B, exonuclease domain DUF1638 PF07796.6 gi|336476893|ref|YP_004616034.1| - 1.8e-33 115.5 0.0 2.3e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Scm3 PF10384.4 gi|336476893|ref|YP_004616034.1| - 0.053 13.0 2.8 3.7 7.0 0.4 3.5 3 1 0 3 3 3 0 Centromere protein Scm3 CobN-Mg_chel PF02514.11 gi|336476894|ref|YP_004616035.1| - 0 1272.3 2.4 0 1264.2 1.2 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF2149 PF09919.4 gi|336476895|ref|YP_004616036.1| - 5.8e-34 116.0 0.2 7e-34 115.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.11 gi|336476896|ref|YP_004616037.1| - 1.9e-14 53.4 0.6 2.7e-14 52.9 0.4 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|336476896|ref|YP_004616037.1| - 1.4e-06 27.9 0.4 1.9e-06 27.5 0.3 1.2 1 0 0 1 1 1 1 VIT family Dispanin PF04505.7 gi|336476896|ref|YP_004616037.1| - 0.013 14.9 2.1 0.83 9.2 0.1 2.7 3 0 0 3 3 3 0 Interferon-induced transmembrane protein Pex24p PF06398.6 gi|336476896|ref|YP_004616037.1| - 0.11 11.2 0.1 0.12 11.1 0.1 1.2 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Glyco_hydro_98C PF08307.6 gi|336476896|ref|YP_004616037.1| - 0.12 11.6 0.1 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 98 C-terminal domain DUF2162 PF09930.4 gi|336476897|ref|YP_004616038.1| - 2.3e-60 203.5 23.9 2.5e-60 203.3 16.6 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Oxidored_q2 PF00420.19 gi|336476897|ref|YP_004616038.1| - 0.0087 15.6 9.4 0.0087 15.6 6.5 2.7 3 1 0 3 3 3 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CaKB PF03185.10 gi|336476897|ref|YP_004616038.1| - 0.51 9.6 2.8 8.4 5.7 0.1 2.6 2 0 0 2 2 2 0 Calcium-activated potassium channel, beta subunit DUF4352 PF11611.3 gi|336476898|ref|YP_004616039.1| - 0.029 14.4 0.5 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4352) Lumazine_bd PF12870.2 gi|336476898|ref|YP_004616039.1| - 0.033 14.2 3.1 0.73 9.9 0.1 2.7 3 0 0 3 3 3 0 Lumazine-binding domain CARDB PF07705.6 gi|336476898|ref|YP_004616039.1| - 0.052 13.5 0.4 0.74 9.9 0.1 2.6 2 2 1 3 3 3 0 CARDB Abhydrolase_6 PF12697.2 gi|336476899|ref|YP_004616040.1| - 1e-40 140.0 0.0 1.1e-40 139.8 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336476899|ref|YP_004616040.1| - 8.3e-20 71.0 0.0 5e-19 68.4 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336476899|ref|YP_004616040.1| - 2e-19 70.0 0.0 3.3e-18 66.1 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|336476899|ref|YP_004616040.1| - 4.3e-05 23.3 0.0 8.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Ndr PF03096.9 gi|336476899|ref|YP_004616040.1| - 0.00012 20.6 0.0 0.00016 20.2 0.0 1.1 1 0 0 1 1 1 1 Ndr family Peptidase_S9 PF00326.16 gi|336476899|ref|YP_004616040.1| - 0.00054 19.2 0.0 0.045 12.9 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|336476899|ref|YP_004616040.1| - 0.0021 17.8 0.0 0.0036 17.1 0.0 1.3 1 0 0 1 1 1 1 Putative lysophospholipase FSH1 PF03959.8 gi|336476899|ref|YP_004616040.1| - 0.11 11.9 0.0 2.2 7.6 0.0 2.3 2 1 0 2 2 2 0 Serine hydrolase (FSH1) DUF3211 PF11485.3 gi|336476900|ref|YP_004616041.1| - 0.039 13.9 2.1 0.11 12.5 1.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3211) HATPase_c PF02518.21 gi|336476901|ref|YP_004616042.1| - 1e-20 73.4 0.1 2.3e-20 72.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336476901|ref|YP_004616042.1| - 2.5e-06 27.4 0.2 4.3e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|336476901|ref|YP_004616042.1| - 0.0047 16.5 1.2 0.047 13.3 0.1 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336476901|ref|YP_004616042.1| - 0.023 14.4 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|336476901|ref|YP_004616042.1| - 0.053 13.0 0.1 0.15 11.6 0.0 1.7 1 1 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain MerC PF03203.9 gi|336476901|ref|YP_004616042.1| - 0.37 11.1 7.1 0.3 11.4 3.1 2.2 1 1 0 1 1 1 0 MerC mercury resistance protein L_HGMIC_fpl PF10242.4 gi|336476901|ref|YP_004616042.1| - 0.47 10.4 6.0 0.34 10.8 0.7 2.4 2 0 0 2 2 2 0 Lipoma HMGIC fusion partner-like protein DUF2769 PF10967.3 gi|336476902|ref|YP_004616043.1| - 4.3e-10 39.7 19.8 1.3e-08 34.9 13.3 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF2769) Methyltransf_18 PF12847.2 gi|336476903|ref|YP_004616044.1| - 7.6e-14 52.2 0.0 1.3e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336476903|ref|YP_004616044.1| - 3.1e-10 40.4 0.0 6.9e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336476903|ref|YP_004616044.1| - 1.3e-08 34.5 0.0 1.9e-08 34.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336476903|ref|YP_004616044.1| - 2.3e-08 33.3 0.0 3.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|336476903|ref|YP_004616044.1| - 2.4e-07 30.6 0.0 4.1e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336476903|ref|YP_004616044.1| - 5.4e-06 26.8 0.0 1.1e-05 25.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336476903|ref|YP_004616044.1| - 2.2e-05 24.7 0.0 4.6e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|336476903|ref|YP_004616044.1| - 2.4e-05 23.5 0.0 5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.9 gi|336476903|ref|YP_004616044.1| - 6.4e-05 22.3 0.0 0.00012 21.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|336476903|ref|YP_004616044.1| - 0.00013 21.1 0.6 0.00019 20.6 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|336476903|ref|YP_004616044.1| - 0.00024 20.0 0.0 0.00041 19.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_26 PF13659.1 gi|336476903|ref|YP_004616044.1| - 0.00025 21.0 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|336476903|ref|YP_004616044.1| - 0.00025 19.8 0.0 0.01 14.5 0.0 2.1 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Fibrillarin PF01269.12 gi|336476903|ref|YP_004616044.1| - 0.00033 19.6 0.1 0.00033 19.6 0.0 1.8 2 0 0 2 2 2 1 Fibrillarin TehB PF03848.9 gi|336476903|ref|YP_004616044.1| - 0.00083 18.5 0.1 0.0018 17.4 0.0 1.5 2 0 0 2 2 2 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|336476903|ref|YP_004616044.1| - 0.0011 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|336476903|ref|YP_004616044.1| - 0.0022 17.1 0.1 0.0053 15.8 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|336476903|ref|YP_004616044.1| - 0.0083 15.5 0.0 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MetW PF07021.7 gi|336476903|ref|YP_004616044.1| - 0.013 14.9 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW ABC_tran PF00005.22 gi|336476904|ref|YP_004616045.1| - 1.9e-31 109.2 0.0 2.5e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476904|ref|YP_004616045.1| - 6.3e-13 49.3 0.9 4.4e-06 26.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|336476904|ref|YP_004616045.1| - 5.3e-07 29.0 0.4 0.0066 15.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|336476904|ref|YP_004616045.1| - 1.3e-05 25.5 0.4 1.9e-05 25.1 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336476904|ref|YP_004616045.1| - 3.4e-05 23.2 0.0 0.00013 21.4 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|336476904|ref|YP_004616045.1| - 5.4e-05 22.5 0.9 0.00092 18.5 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|336476904|ref|YP_004616045.1| - 6.4e-05 22.1 0.0 9.5e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|336476904|ref|YP_004616045.1| - 0.00015 21.8 2.7 0.0044 17.1 1.9 2.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336476904|ref|YP_004616045.1| - 0.0002 21.2 0.1 0.011 15.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|336476904|ref|YP_004616045.1| - 0.0012 18.6 0.1 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase ABC_ATPase PF09818.4 gi|336476904|ref|YP_004616045.1| - 0.0013 17.4 0.3 2.4 6.6 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|336476904|ref|YP_004616045.1| - 0.0027 17.7 0.1 0.005 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|336476904|ref|YP_004616045.1| - 0.0047 16.1 0.0 0.0096 15.0 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|336476904|ref|YP_004616045.1| - 0.005 16.4 0.0 0.0071 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|336476904|ref|YP_004616045.1| - 0.005 15.7 0.6 0.13 11.0 0.0 2.6 2 1 0 2 2 2 1 NB-ARC domain T2SE PF00437.15 gi|336476904|ref|YP_004616045.1| - 0.0061 15.5 0.1 0.013 14.4 0.0 1.5 1 1 0 1 1 1 1 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|336476904|ref|YP_004616045.1| - 0.0089 15.9 0.1 0.079 12.8 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|336476904|ref|YP_004616045.1| - 0.01 14.3 0.1 0.68 8.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|336476904|ref|YP_004616045.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|336476904|ref|YP_004616045.1| - 0.019 14.6 0.0 0.4 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|336476904|ref|YP_004616045.1| - 0.02 14.3 0.7 0.13 11.6 0.1 2.0 1 1 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|336476904|ref|YP_004616045.1| - 0.034 13.9 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|336476904|ref|YP_004616045.1| - 0.034 13.8 0.0 0.076 12.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|336476904|ref|YP_004616045.1| - 0.037 13.6 0.1 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|336476904|ref|YP_004616045.1| - 0.047 13.1 0.8 0.13 11.6 0.0 2.1 2 1 1 3 3 3 0 IstB-like ATP binding protein RNA12 PF10443.4 gi|336476904|ref|YP_004616045.1| - 0.054 11.9 0.0 0.078 11.4 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein PhoH PF02562.11 gi|336476904|ref|YP_004616045.1| - 0.061 12.5 0.1 0.15 11.2 0.0 1.7 1 1 1 2 2 2 0 PhoH-like protein Rad17 PF03215.10 gi|336476904|ref|YP_004616045.1| - 0.096 11.3 0.1 0.16 10.5 0.1 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|336476904|ref|YP_004616045.1| - 0.12 12.5 0.3 0.39 10.9 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|336476904|ref|YP_004616045.1| - 0.13 11.8 0.1 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|336476904|ref|YP_004616045.1| - 0.13 11.5 0.1 0.26 10.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|336476904|ref|YP_004616045.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|336476904|ref|YP_004616045.1| - 0.15 12.9 0.9 0.44 11.3 0.6 2.0 1 1 0 1 1 1 0 AAA domain FecCD PF01032.13 gi|336476905|ref|YP_004616046.1| - 1.5e-92 309.7 32.0 1.8e-92 309.4 22.2 1.1 1 0 0 1 1 1 1 FecCD transport family RhodobacterPufX PF11511.3 gi|336476905|ref|YP_004616046.1| - 0.024 14.0 0.4 0.024 14.0 0.3 3.3 4 0 0 4 4 4 0 Intrinsic membrane protein PufX DUF3796 PF12676.2 gi|336476905|ref|YP_004616046.1| - 5.6 7.2 9.1 6.3 7.0 0.1 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3796) Peripla_BP_2 PF01497.13 gi|336476906|ref|YP_004616047.1| - 2.8e-24 85.5 0.0 4e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein MatE PF01554.13 gi|336476907|ref|YP_004616048.1| - 7.9e-58 194.6 41.0 2e-32 112.0 6.8 3.2 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|336476907|ref|YP_004616048.1| - 4.2e-13 49.3 19.6 3.8e-12 46.2 1.1 5.2 2 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MarR_2 PF12802.2 gi|336476908|ref|YP_004616049.1| - 2.8e-12 46.0 0.0 5e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336476908|ref|YP_004616049.1| - 1.1e-09 37.9 0.0 1.9e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|336476908|ref|YP_004616049.1| - 4.2e-09 36.6 0.0 6.9e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|336476908|ref|YP_004616049.1| - 1.1e-06 28.2 0.2 1.9e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|336476908|ref|YP_004616049.1| - 6.6e-06 26.0 0.0 9.6e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|336476908|ref|YP_004616049.1| - 1.8e-05 24.5 0.0 3.5e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|336476908|ref|YP_004616049.1| - 4.4e-05 23.5 0.0 0.00026 21.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336476908|ref|YP_004616049.1| - 0.0011 18.3 0.0 0.0056 16.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|336476908|ref|YP_004616049.1| - 0.0034 17.1 0.1 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|336476908|ref|YP_004616049.1| - 0.0035 16.9 0.0 0.0062 16.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|336476908|ref|YP_004616049.1| - 0.0047 16.4 0.1 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|336476908|ref|YP_004616049.1| - 0.0049 16.2 0.0 0.0084 15.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF3116 PF11313.3 gi|336476908|ref|YP_004616049.1| - 0.012 15.2 0.3 0.032 13.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) DUF2513 PF10711.4 gi|336476908|ref|YP_004616049.1| - 0.014 15.5 0.1 0.034 14.2 0.0 1.6 1 1 1 2 2 2 0 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|336476908|ref|YP_004616049.1| - 0.019 14.7 0.1 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.12 gi|336476908|ref|YP_004616049.1| - 0.031 13.7 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.1 gi|336476908|ref|YP_004616049.1| - 0.031 14.4 0.0 0.043 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2551 PF10826.3 gi|336476908|ref|YP_004616049.1| - 0.04 13.7 0.2 0.18 11.7 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2551) HTH_5 PF01022.15 gi|336476908|ref|YP_004616049.1| - 0.055 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.1 gi|336476908|ref|YP_004616049.1| - 0.071 12.9 0.2 0.085 12.6 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_20 PF12840.2 gi|336476908|ref|YP_004616049.1| - 0.077 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|336476908|ref|YP_004616049.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|336476908|ref|YP_004616049.1| - 0.12 12.0 0.2 2.4 7.9 0.0 2.4 3 0 0 3 3 2 0 Homeodomain-like domain Peripla_BP_2 PF01497.13 gi|336476909|ref|YP_004616050.1| - 1.7e-20 73.1 0.0 2.4e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|336476910|ref|YP_004616051.1| - 1.9e-91 306.1 31.7 2.3e-91 305.9 22.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|336476911|ref|YP_004616052.1| - 3.4e-34 118.0 0.0 4.8e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476911|ref|YP_004616052.1| - 6.8e-13 49.2 1.1 2.3e-06 27.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336476911|ref|YP_004616052.1| - 1.3e-07 31.0 1.2 0.0027 16.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336476911|ref|YP_004616052.1| - 1.6e-07 30.7 0.7 0.0059 15.7 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|336476911|ref|YP_004616052.1| - 4.9e-05 22.7 0.0 0.00011 21.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336476911|ref|YP_004616052.1| - 5.8e-05 23.5 1.3 7.6e-05 23.1 0.9 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336476911|ref|YP_004616052.1| - 0.00045 20.3 1.1 0.0058 16.7 0.8 2.2 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|336476911|ref|YP_004616052.1| - 0.003 16.4 0.2 0.012 14.5 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|336476911|ref|YP_004616052.1| - 0.0031 17.4 0.1 0.037 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336476911|ref|YP_004616052.1| - 0.0056 16.6 0.1 0.016 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|336476911|ref|YP_004616052.1| - 0.01 14.4 0.5 3.1 6.2 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|336476911|ref|YP_004616052.1| - 0.011 15.6 0.1 0.06 13.2 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|336476911|ref|YP_004616052.1| - 0.012 14.1 0.9 1.1 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|336476911|ref|YP_004616052.1| - 0.012 15.2 0.0 0.031 13.8 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|336476911|ref|YP_004616052.1| - 0.013 14.9 0.0 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|336476911|ref|YP_004616052.1| - 0.016 15.4 0.1 0.16 12.1 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|336476911|ref|YP_004616052.1| - 0.017 14.7 0.0 0.053 13.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336476911|ref|YP_004616052.1| - 0.019 14.7 0.0 0.044 13.5 0.0 1.6 2 0 0 2 2 1 0 Part of AAA domain RNA12 PF10443.4 gi|336476911|ref|YP_004616052.1| - 0.02 13.3 0.0 0.04 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein AAA_17 PF13207.1 gi|336476911|ref|YP_004616052.1| - 0.025 15.3 0.0 0.057 14.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336476911|ref|YP_004616052.1| - 0.031 13.7 1.0 0.26 10.6 0.7 2.1 1 1 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|336476911|ref|YP_004616052.1| - 0.034 13.6 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|336476911|ref|YP_004616052.1| - 0.037 13.7 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|336476911|ref|YP_004616052.1| - 0.044 12.9 0.0 0.099 11.7 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|336476911|ref|YP_004616052.1| - 0.048 13.3 0.0 0.1 12.2 0.0 1.5 2 0 0 2 2 1 0 NACHT domain PRK PF00485.13 gi|336476911|ref|YP_004616052.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|336476911|ref|YP_004616052.1| - 0.056 12.2 2.7 0.44 9.3 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain Arch_ATPase PF01637.13 gi|336476911|ref|YP_004616052.1| - 0.057 13.1 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|336476911|ref|YP_004616052.1| - 0.059 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.10 gi|336476911|ref|YP_004616052.1| - 0.073 11.7 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|336476911|ref|YP_004616052.1| - 0.093 12.6 0.0 0.18 11.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.10 gi|336476911|ref|YP_004616052.1| - 0.11 12.2 0.6 3 7.5 0.0 2.7 2 1 1 3 3 3 0 NTPase Pox_A32 PF04665.7 gi|336476911|ref|YP_004616052.1| - 0.11 11.8 0.4 0.21 10.8 0.0 1.6 2 0 0 2 2 1 0 Poxvirus A32 protein AAA_24 PF13479.1 gi|336476911|ref|YP_004616052.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0066 PF01980.11 gi|336476912|ref|YP_004616053.1| - 2.5e-32 111.3 0.0 2.7e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 MacB_PCD PF12704.2 gi|336476913|ref|YP_004616054.1| - 3.4e-38 131.5 2.7 3.4e-38 131.5 1.9 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336476913|ref|YP_004616054.1| - 1e-20 73.7 19.7 3.6e-20 71.9 9.3 2.2 2 0 0 2 2 2 2 FtsX-like permease family TauE PF01925.14 gi|336476913|ref|YP_004616054.1| - 0.008 15.6 10.7 0.008 15.6 7.4 2.0 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF3784 PF12650.2 gi|336476914|ref|YP_004616055.1| - 1.9e-11 43.7 9.0 2.2e-11 43.5 6.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) SdpI PF13630.1 gi|336476914|ref|YP_004616055.1| - 0.083 12.6 14.9 0.81 9.4 4.5 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF1673 PF07895.6 gi|336476914|ref|YP_004616055.1| - 0.83 9.1 3.8 0.92 8.9 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF3671 PF12420.3 gi|336476914|ref|YP_004616055.1| - 0.98 9.4 4.8 1.5 8.8 3.3 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF1049 PF06305.6 gi|336476914|ref|YP_004616055.1| - 4.8 6.7 5.4 11 5.5 1.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1049) Tetraspannin PF00335.15 gi|336476914|ref|YP_004616055.1| - 7.8 5.6 10.7 44 3.2 7.4 1.9 1 1 0 1 1 1 0 Tetraspanin family DUF308 PF03729.8 gi|336476914|ref|YP_004616055.1| - 8.3 6.4 13.1 8.7 6.4 0.5 2.3 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF4366 PF14283.1 gi|336476915|ref|YP_004616056.1| - 0.00098 18.6 0.4 0.0015 18.0 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) AIF-MLS PF14962.1 gi|336476915|ref|YP_004616056.1| - 0.045 13.4 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Mitochondria Localisation Sequence ETRAMP PF09716.5 gi|336476915|ref|YP_004616056.1| - 0.059 13.3 1.3 8.8 6.3 0.4 2.5 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) ABC_tran PF00005.22 gi|336476916|ref|YP_004616057.1| - 7.1e-32 110.5 0.0 1e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336476916|ref|YP_004616057.1| - 1.1e-15 58.3 0.4 1.7e-13 51.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336476916|ref|YP_004616057.1| - 5.9e-08 32.2 0.2 0.0012 18.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336476916|ref|YP_004616057.1| - 4.8e-05 22.7 0.0 9.1e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336476916|ref|YP_004616057.1| - 0.00019 20.6 0.1 0.00036 19.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|336476916|ref|YP_004616057.1| - 0.0002 21.5 0.2 0.025 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336476916|ref|YP_004616057.1| - 0.00051 20.0 0.1 0.00083 19.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|336476916|ref|YP_004616057.1| - 0.00051 20.3 0.5 0.036 14.3 0.1 2.2 1 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|336476916|ref|YP_004616057.1| - 0.001 18.5 0.2 0.0054 16.2 0.1 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|336476916|ref|YP_004616057.1| - 0.0022 18.7 0.0 0.006 17.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336476916|ref|YP_004616057.1| - 0.0039 16.2 0.6 1.2 8.1 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|336476916|ref|YP_004616057.1| - 0.0074 16.1 0.1 0.052 13.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|336476916|ref|YP_004616057.1| - 0.0075 16.6 0.1 0.014 15.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336476916|ref|YP_004616057.1| - 0.013 14.9 0.0 0.034 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|336476916|ref|YP_004616057.1| - 0.017 15.0 0.3 0.032 14.1 0.2 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase KaiC PF06745.8 gi|336476916|ref|YP_004616057.1| - 0.034 13.2 0.1 6.8 5.7 0.0 2.2 2 0 0 2 2 2 0 KaiC Arch_ATPase PF01637.13 gi|336476916|ref|YP_004616057.1| - 0.035 13.7 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase RNA12 PF10443.4 gi|336476916|ref|YP_004616057.1| - 0.054 11.9 0.0 0.071 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein NB-ARC PF00931.17 gi|336476916|ref|YP_004616057.1| - 0.057 12.2 0.1 0.31 9.8 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|336476916|ref|YP_004616057.1| - 0.061 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|336476916|ref|YP_004616057.1| - 0.071 13.0 0.1 0.39 10.6 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|336476916|ref|YP_004616057.1| - 0.079 12.5 0.0 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|336476916|ref|YP_004616057.1| - 0.085 12.3 0.1 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MutS_V PF00488.16 gi|336476916|ref|YP_004616057.1| - 0.11 11.9 0.1 1.4 8.2 0.0 2.0 2 0 0 2 2 2 0 MutS domain V AAA_28 PF13521.1 gi|336476916|ref|YP_004616057.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336476916|ref|YP_004616057.1| - 0.12 11.7 0.0 0.53 9.6 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|336476916|ref|YP_004616057.1| - 0.15 12.2 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase MacB_PCD PF12704.2 gi|336476917|ref|YP_004616058.1| - 1.1e-31 110.1 1.3 1.1e-31 110.1 0.9 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336476917|ref|YP_004616058.1| - 2.3e-17 62.8 12.1 2.3e-17 62.8 8.4 2.2 2 0 0 2 2 2 1 FtsX-like permease family Glyco_hydro_2 PF00703.16 gi|336476918|ref|YP_004616059.1| - 0.0024 18.3 1.8 2.2 8.7 0.0 2.8 2 1 0 2 2 2 2 Glycosyl hydrolases family 2 Big_3_4 PF13754.1 gi|336476918|ref|YP_004616059.1| - 0.082 13.2 0.5 0.082 13.2 0.3 1.9 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) ABC_tran PF00005.22 gi|336476919|ref|YP_004616060.1| - 1e-33 116.5 0.0 1.6e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|336476919|ref|YP_004616060.1| - 6e-10 38.7 1.4 3e-08 33.1 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336476919|ref|YP_004616060.1| - 6.8e-10 39.3 0.1 1.1e-07 32.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336476919|ref|YP_004616060.1| - 3.6e-06 26.2 0.2 0.029 13.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|336476919|ref|YP_004616060.1| - 5.7e-06 26.4 0.2 5.6e-05 23.2 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336476919|ref|YP_004616060.1| - 6.3e-05 23.1 0.4 0.051 13.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336476919|ref|YP_004616060.1| - 8.1e-05 22.0 0.4 0.00018 20.9 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|336476919|ref|YP_004616060.1| - 0.004 16.8 0.2 1.2 8.8 0.0 2.2 2 0 0 2 2 2 1 NTPase DUF258 PF03193.11 gi|336476919|ref|YP_004616060.1| - 0.0047 16.1 0.1 0.0081 15.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|336476919|ref|YP_004616060.1| - 0.0065 15.8 0.4 0.072 12.4 0.1 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|336476919|ref|YP_004616060.1| - 0.01 15.5 0.1 0.098 12.3 0.0 2.1 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|336476919|ref|YP_004616060.1| - 0.012 15.3 0.1 0.22 11.3 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_11 PF13086.1 gi|336476919|ref|YP_004616060.1| - 0.015 14.8 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|336476919|ref|YP_004616060.1| - 0.015 13.7 0.0 0.029 12.8 0.0 1.3 1 1 0 1 1 1 0 RNA12 protein NACHT PF05729.7 gi|336476919|ref|YP_004616060.1| - 0.024 14.3 0.3 0.46 10.1 0.0 2.6 2 1 1 3 3 3 0 NACHT domain AAA_10 PF12846.2 gi|336476919|ref|YP_004616060.1| - 0.026 13.9 0.7 0.11 11.9 0.3 1.9 1 1 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|336476919|ref|YP_004616060.1| - 0.051 13.4 0.0 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|336476919|ref|YP_004616060.1| - 0.056 13.1 0.4 0.3 10.7 0.1 2.4 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|336476919|ref|YP_004616060.1| - 0.061 13.6 1.3 0.3 11.3 0.9 2.2 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336476919|ref|YP_004616060.1| - 0.069 12.5 0.1 2.9 7.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|336476919|ref|YP_004616060.1| - 0.079 13.7 1.9 0.19 12.5 1.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336476919|ref|YP_004616060.1| - 0.087 13.1 1.4 0.1 12.9 1.0 1.6 1 1 0 1 1 1 0 AAA domain YhzD PF14120.1 gi|336476919|ref|YP_004616060.1| - 0.095 12.6 0.0 0.78 9.6 0.0 2.1 2 0 0 2 2 2 0 YhzD-like protein AAA_30 PF13604.1 gi|336476919|ref|YP_004616060.1| - 0.095 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|336476919|ref|YP_004616060.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MacB_PCD PF12704.2 gi|336476920|ref|YP_004616061.1| - 1.1e-24 87.3 2.0 2e-24 86.4 1.4 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336476920|ref|YP_004616061.1| - 1.3e-23 83.0 12.9 4.4e-21 74.8 6.8 2.2 2 0 0 2 2 2 2 FtsX-like permease family UbiA PF01040.13 gi|336476920|ref|YP_004616061.1| - 0.017 14.3 7.7 0.2 10.8 2.3 2.2 2 0 0 2 2 2 0 UbiA prenyltransferase family DUF1628 PF07790.6 gi|336476920|ref|YP_004616061.1| - 0.11 13.3 0.5 0.11 13.3 0.4 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) FeoA PF04023.9 gi|336476921|ref|YP_004616062.1| - 2.8e-11 43.2 0.0 2.8e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 FeoA domain AA_permease PF00324.16 gi|336476922|ref|YP_004616063.1| - 1.2e-52 178.8 50.7 1.6e-52 178.4 35.2 1.1 1 0 0 1 1 1 1 Amino acid permease Lactamase_B_2 PF12706.2 gi|336476923|ref|YP_004616064.1| - 9.7e-22 77.4 0.0 1.2e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336476923|ref|YP_004616064.1| - 1.3e-09 37.9 2.0 3.2e-09 36.7 0.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily SnoaL_4 PF13577.1 gi|336476924|ref|YP_004616065.1| - 0.017 15.0 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain PPDK_N PF01326.14 gi|336476925|ref|YP_004616066.1| - 5.3e-91 305.0 0.0 1.2e-90 303.9 0.0 1.4 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|336476925|ref|YP_004616066.1| - 2e-57 194.2 0.0 3.1e-57 193.7 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|336476925|ref|YP_004616066.1| - 2.9e-25 87.6 0.3 7.8e-25 86.2 0.2 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain MFS_1 PF07690.11 gi|336476927|ref|YP_004616068.1| - 3.3e-38 131.2 76.1 6.9e-29 100.6 29.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|336476927|ref|YP_004616068.1| - 9.8e-09 34.2 15.3 9.8e-09 34.2 10.6 2.6 1 1 2 3 3 3 1 Sugar (and other) transporter Ssu72 PF04722.8 gi|336476927|ref|YP_004616068.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Ssu72-like protein KaiC PF06745.8 gi|336476928|ref|YP_004616069.1| - 5.4e-90 300.4 9.8 1.1e-55 188.2 4.9 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|336476928|ref|YP_004616069.1| - 1.5e-22 79.9 0.1 5e-11 42.3 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336476928|ref|YP_004616069.1| - 1.5e-10 41.3 0.2 0.00039 20.5 0.1 2.5 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|336476928|ref|YP_004616069.1| - 1.7e-08 33.8 0.1 0.0038 16.2 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|336476928|ref|YP_004616069.1| - 6.5e-08 32.5 2.8 0.0009 19.0 0.0 2.2 2 0 0 2 2 2 2 Archaeal ATPase RecA PF00154.16 gi|336476928|ref|YP_004616069.1| - 1.4e-07 30.9 0.8 9.6e-05 21.5 0.0 3.0 2 1 0 2 2 2 1 recA bacterial DNA recombination protein Rad51 PF08423.6 gi|336476928|ref|YP_004616069.1| - 3.2e-07 29.5 0.1 0.02 13.8 0.0 2.3 2 0 0 2 2 2 2 Rad51 DnaB_C PF03796.10 gi|336476928|ref|YP_004616069.1| - 1.4e-06 27.4 0.5 0.00062 18.7 0.0 2.4 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA PF00004.24 gi|336476928|ref|YP_004616069.1| - 1.3e-05 25.3 1.6 0.027 14.6 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|336476928|ref|YP_004616069.1| - 2.3e-05 24.2 0.8 0.088 12.7 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|336476928|ref|YP_004616069.1| - 2.7e-05 23.8 0.0 0.28 10.9 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_16 PF13191.1 gi|336476928|ref|YP_004616069.1| - 7.5e-05 22.8 0.0 0.32 10.9 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.1 gi|336476928|ref|YP_004616069.1| - 0.00011 21.8 0.0 0.36 10.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|336476928|ref|YP_004616069.1| - 0.00025 20.7 1.0 0.024 14.3 0.1 2.6 2 2 0 2 2 2 1 NACHT domain DEAD PF00270.24 gi|336476928|ref|YP_004616069.1| - 0.00042 19.8 0.1 0.22 11.0 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|336476928|ref|YP_004616069.1| - 0.00058 19.3 2.2 0.59 9.5 0.0 3.3 2 1 0 3 3 3 1 IstB-like ATP binding protein PhoH PF02562.11 gi|336476928|ref|YP_004616069.1| - 0.00069 18.9 1.1 1.1 8.4 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein TrwB_AAD_bind PF10412.4 gi|336476928|ref|YP_004616069.1| - 0.0017 17.0 0.5 0.73 8.3 0.1 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain ATP-synt_ab PF00006.20 gi|336476928|ref|YP_004616069.1| - 0.0021 17.5 0.1 0.15 11.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|336476928|ref|YP_004616069.1| - 0.0064 16.0 1.1 2.8 7.4 0.2 2.9 2 2 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|336476928|ref|YP_004616069.1| - 0.0082 15.6 0.4 0.56 9.6 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family PAXNEB PF05625.6 gi|336476928|ref|YP_004616069.1| - 0.0095 14.8 0.1 0.076 11.8 0.0 2.1 2 0 0 2 2 2 1 PAXNEB protein AAA_11 PF13086.1 gi|336476928|ref|YP_004616069.1| - 0.013 15.0 0.1 0.79 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|336476928|ref|YP_004616069.1| - 0.016 14.1 0.7 0.67 8.7 0.1 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Miro PF08477.8 gi|336476928|ref|YP_004616069.1| - 0.026 15.0 0.4 0.58 10.6 0.0 2.8 3 0 0 3 3 2 0 Miro-like protein AAA_10 PF12846.2 gi|336476928|ref|YP_004616069.1| - 0.03 13.7 0.0 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|336476928|ref|YP_004616069.1| - 0.032 14.4 0.1 2.3 8.4 0.0 2.7 2 0 0 2 2 2 0 RNA helicase Sigma54_activat PF00158.21 gi|336476928|ref|YP_004616069.1| - 0.04 13.4 0.2 6.2 6.2 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Zot PF05707.7 gi|336476928|ref|YP_004616069.1| - 0.053 12.9 1.1 0.5 9.7 0.0 2.6 3 0 0 3 3 3 0 Zonular occludens toxin (Zot) Helicase_RecD PF05127.9 gi|336476928|ref|YP_004616069.1| - 0.067 12.8 0.3 0.74 9.4 0.0 2.6 3 0 0 3 3 3 0 Helicase AAA_5 PF07728.9 gi|336476928|ref|YP_004616069.1| - 0.079 12.6 0.7 3 7.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|336476928|ref|YP_004616069.1| - 0.088 12.3 0.1 4.5 6.8 0.0 2.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain DAP3 PF10236.4 gi|336476928|ref|YP_004616069.1| - 0.1 11.5 0.0 3.9 6.3 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.14 gi|336476928|ref|YP_004616069.1| - 0.24 10.8 2.9 0.48 9.8 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|336476928|ref|YP_004616069.1| - 2.8 8.2 6.8 6.8 7.0 0.4 3.2 2 2 0 2 2 2 0 AAA domain Phosphodiest PF01663.17 gi|336476929|ref|YP_004616070.1| - 9.6e-13 48.1 0.0 1.5e-11 44.2 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|336476929|ref|YP_004616070.1| - 2.6e-09 36.6 0.0 3.1e-08 33.1 0.0 2.1 1 1 0 2 2 2 1 Sulfatase Metalloenzyme PF01676.13 gi|336476929|ref|YP_004616070.1| - 0.00012 21.5 1.4 0.0015 17.9 1.0 2.2 1 1 0 1 1 1 1 Metalloenzyme superfamily SSF PF00474.12 gi|336476931|ref|YP_004616072.1| - 5.4e-60 203.1 38.4 5.4e-60 203.1 26.6 1.4 2 0 0 2 2 2 1 Sodium:solute symporter family MoaE PF02391.12 gi|336476932|ref|YP_004616073.1| - 4.2e-26 91.0 0.2 7.3e-26 90.2 0.1 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|336476932|ref|YP_004616073.1| - 1e-15 57.6 1.6 1e-15 57.6 1.1 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0128 PF03673.8 gi|336476932|ref|YP_004616073.1| - 0.017 14.4 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) Toprim_Crpt PF13342.1 gi|336476932|ref|YP_004616073.1| - 0.091 12.4 0.0 0.24 11.0 0.0 1.8 1 0 0 1 1 1 0 C-terminal repeat of topoisomerase SDH_sah PF01972.11 gi|336476933|ref|YP_004616074.1| - 2.6e-85 285.6 1.2 3e-85 285.4 0.8 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|336476933|ref|YP_004616074.1| - 1e-07 31.8 0.0 1.8e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.13 gi|336476933|ref|YP_004616074.1| - 0.0002 21.1 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 DHquinase_II PF01220.14 gi|336476933|ref|YP_004616074.1| - 0.0084 15.4 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Dehydroquinase class II RadC PF04002.10 gi|336476934|ref|YP_004616075.1| - 3e-45 152.8 0.0 4.8e-45 152.2 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.1 gi|336476934|ref|YP_004616075.1| - 0.0014 18.1 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HHH_2 PF12826.2 gi|336476934|ref|YP_004616075.1| - 0.0016 18.2 0.0 0.003 17.4 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HhH-GPD PF00730.20 gi|336476934|ref|YP_004616075.1| - 0.0094 16.2 0.0 0.01 16.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|336476934|ref|YP_004616075.1| - 0.018 15.1 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH PF00633.18 gi|336476934|ref|YP_004616075.1| - 0.037 13.7 0.0 0.084 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF257 PF03192.8 gi|336476934|ref|YP_004616075.1| - 0.042 13.1 0.3 0.076 12.3 0.1 1.4 1 1 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 Toxin-JAB1 PF15659.1 gi|336476934|ref|YP_004616075.1| - 0.089 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 JAB-like toxin 1 DUF1743 PF08489.6 gi|336476935|ref|YP_004616076.1| - 7.8e-19 67.5 3.4 1.4e-17 63.5 0.0 2.6 2 1 1 3 3 3 2 Domain of unknown function (DUF1743) TPP_enzyme_C PF02775.16 gi|336476936|ref|YP_004616077.1| - 6.4e-10 38.8 0.0 1.5e-09 37.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|336476936|ref|YP_004616077.1| - 6.1e-07 29.1 0.0 2.5e-06 27.1 0.0 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|336476936|ref|YP_004616077.1| - 9.7e-06 25.1 0.0 0.0014 18.1 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF123 PF01986.11 gi|336476937|ref|YP_004616078.1| - 8.1e-30 102.8 0.0 1.1e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF2103 PF09876.4 gi|336476939|ref|YP_004616080.1| - 5.5e-37 125.6 1.7 6.5e-37 125.4 1.2 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) polyprenyl_synt PF00348.12 gi|336476940|ref|YP_004616081.1| - 2e-65 220.2 0.0 2.5e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|336476941|ref|YP_004616082.1| - 1.9e-15 57.0 1.3 4.4e-15 55.8 0.3 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|336476941|ref|YP_004616082.1| - 2.9e-08 33.3 0.8 7.7e-08 32.0 0.6 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|336476941|ref|YP_004616082.1| - 2.5e-06 27.1 0.9 3e-05 23.6 0.1 2.2 1 1 0 2 2 2 1 Beta-lactamase superfamily domain SynMuv_product PF06047.6 gi|336476941|ref|YP_004616082.1| - 0.012 15.3 0.1 0.04 13.6 0.0 1.9 2 0 0 2 2 2 0 Ras-induced vulval development antagonist Prenyltransf PF01255.14 gi|336476941|ref|YP_004616082.1| - 0.064 12.3 0.0 0.097 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase FMN_dh PF01070.13 gi|336476942|ref|YP_004616083.1| - 2.3e-32 112.2 0.0 8.7e-20 70.8 0.0 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|336476942|ref|YP_004616083.1| - 1.1e-06 27.7 0.1 0.001 18.0 0.0 3.1 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|336476942|ref|YP_004616083.1| - 0.00048 19.3 0.3 0.0018 17.4 0.1 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|336476942|ref|YP_004616083.1| - 0.00051 19.0 4.5 0.0011 18.0 0.0 3.1 3 1 0 4 4 4 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|336476942|ref|YP_004616083.1| - 0.012 14.5 0.3 0.019 13.8 0.2 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase AA_kinase PF00696.23 gi|336476943|ref|YP_004616084.1| - 6.8e-39 133.8 2.4 7.7e-39 133.6 1.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|336476944|ref|YP_004616085.1| - 5.2e-19 68.0 0.5 1.4e-18 66.7 0.4 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|336476944|ref|YP_004616085.1| - 1.9e-14 53.5 0.2 1.9e-14 53.5 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|336476944|ref|YP_004616085.1| - 0.017 14.3 0.1 0.04 13.1 0.0 1.7 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Memo PF01875.12 gi|336476945|ref|YP_004616086.1| - 9.7e-80 267.3 0.1 1.1e-79 267.1 0.1 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|336476945|ref|YP_004616086.1| - 1.1e-05 24.5 0.0 1.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase DUF556 PF04476.8 gi|336476945|ref|YP_004616086.1| - 0.048 12.8 0.8 0.12 11.6 0.3 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF556) Fer2_2 PF01799.15 gi|336476945|ref|YP_004616086.1| - 0.15 11.9 0.0 0.47 10.3 0.0 1.9 2 0 0 2 2 2 0 [2Fe-2S] binding domain Sigma_1_2 PF03084.9 gi|336476945|ref|YP_004616086.1| - 0.15 10.6 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 Reoviral Sigma1/Sigma2 family Ribosomal_S2 PF00318.15 gi|336476946|ref|YP_004616087.1| - 1.4e-40 138.7 0.1 1.8e-20 73.0 0.1 2.2 1 1 1 2 2 2 2 Ribosomal protein S2 DUF3965 PF13112.1 gi|336476946|ref|YP_004616087.1| - 0.043 12.9 0.0 0.061 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3965) PHP PF02811.14 gi|336476946|ref|YP_004616087.1| - 0.062 13.0 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 PHP domain Avirulence PF03377.8 gi|336476946|ref|YP_004616087.1| - 0.11 11.2 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Tnp_P_element_C PF12596.3 gi|336476946|ref|YP_004616087.1| - 0.47 10.7 4.9 1.2 9.4 3.3 1.7 2 0 0 2 2 2 0 87kDa Transposase Peripla_BP_4 PF13407.1 gi|336476946|ref|YP_004616087.1| - 4.1 6.6 6.0 0.71 9.1 0.9 2.0 2 1 0 2 2 2 0 Periplasmic binding protein domain RNA_pol_Rpb6 PF01192.17 gi|336476947|ref|YP_004616088.1| - 4.3e-18 64.7 0.0 5.2e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|336476948|ref|YP_004616089.1| - 1.1e-28 99.0 0.2 1.2e-28 98.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|336476949|ref|YP_004616090.1| - 5e-35 120.3 0.3 5.7e-35 120.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|336476950|ref|YP_004616091.1| - 1.3e-24 86.6 0.0 1.6e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|336476951|ref|YP_004616092.1| - 1.1e-16 61.4 0.1 1.5e-16 60.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Spore_III_AB PF09548.5 gi|336476951|ref|YP_004616092.1| - 0.098 12.4 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DUF2240 PF09999.4 gi|336476952|ref|YP_004616093.1| - 1.8e-38 131.1 0.6 2.1e-38 131.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) XPC-binding PF09280.6 gi|336476952|ref|YP_004616093.1| - 0.018 14.4 1.4 0.044 13.2 1.0 1.6 1 1 0 1 1 1 0 XPC-binding domain FrhB_FdhB_C PF04432.8 gi|336476953|ref|YP_004616094.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 2-Hacid_dh_C PF02826.14 gi|336476954|ref|YP_004616095.1| - 4.1e-63 211.7 0.9 6.1e-63 211.1 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|336476954|ref|YP_004616095.1| - 9.9e-38 128.6 0.5 1.9e-37 127.7 0.3 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|336476954|ref|YP_004616095.1| - 2.9e-05 23.5 0.2 0.00014 21.2 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ACT PF01842.20 gi|336476954|ref|YP_004616095.1| - 0.00042 19.7 0.8 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.10 gi|336476954|ref|YP_004616095.1| - 0.00044 20.1 1.3 0.001 18.9 0.1 2.2 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|336476954|ref|YP_004616095.1| - 0.004 17.2 0.1 0.038 14.1 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain URO-D PF01208.12 gi|336476955|ref|YP_004616096.1| - 2e-84 283.4 0.4 2.2e-84 283.3 0.2 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF4445 PF14574.1 gi|336476956|ref|YP_004616097.1| - 7.2e-109 363.7 4.2 1e-108 363.2 2.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4 PF00037.22 gi|336476956|ref|YP_004616097.1| - 8.7e-07 28.2 9.3 0.0052 16.3 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336476956|ref|YP_004616097.1| - 1.2e-05 25.5 13.3 3.4e-05 24.1 9.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336476956|ref|YP_004616097.1| - 1.6e-05 25.5 11.8 0.024 15.3 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|336476956|ref|YP_004616097.1| - 2e-05 24.3 12.7 3.6e-05 23.5 8.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476956|ref|YP_004616097.1| - 3.4e-05 24.0 14.3 7.4e-05 22.9 9.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476956|ref|YP_004616097.1| - 0.0012 18.5 14.6 0.0095 15.7 10.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336476956|ref|YP_004616097.1| - 0.0022 17.7 12.8 0.036 13.9 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336476956|ref|YP_004616097.1| - 0.0031 17.7 13.9 0.06 13.7 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336476956|ref|YP_004616097.1| - 0.011 15.6 15.4 0.28 11.1 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336476956|ref|YP_004616097.1| - 0.013 15.4 14.9 0.038 14.0 10.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|336476956|ref|YP_004616097.1| - 0.058 13.2 4.8 0.11 12.3 3.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336476956|ref|YP_004616097.1| - 0.18 12.4 14.5 1.5 9.6 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336476956|ref|YP_004616097.1| - 0.79 10.1 15.2 0.17 12.2 2.0 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336476956|ref|YP_004616097.1| - 1 9.8 15.7 5.4 7.5 2.4 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336476956|ref|YP_004616097.1| - 5.7 7.4 10.6 31 5.0 7.3 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Na_H_Exchanger PF00999.16 gi|336476957|ref|YP_004616098.1| - 4.3e-47 160.4 45.1 5e-47 160.2 31.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|336476957|ref|YP_004616098.1| - 4.3e-10 39.0 0.0 8.6e-10 38.0 0.0 1.5 1 0 0 1 1 1 1 TrkA-C domain Usp PF00582.21 gi|336476958|ref|YP_004616099.1| - 5e-32 111.0 0.7 9.8e-32 110.0 0.5 1.5 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|336476958|ref|YP_004616099.1| - 0.035 13.8 0.1 0.054 13.2 0.0 1.3 1 1 0 1 1 1 0 Electron transfer flavoprotein domain GYD PF08734.6 gi|336476959|ref|YP_004616100.1| - 1.1e-24 85.9 0.0 1.2e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.16 gi|336476959|ref|YP_004616100.1| - 0.00058 19.5 0.0 0.00076 19.1 0.0 1.1 1 0 0 1 1 1 1 AsnC family Tsp45I PF06300.7 gi|336476959|ref|YP_004616100.1| - 0.097 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme tRNA-synt_2b PF00587.20 gi|336476960|ref|YP_004616101.1| - 1.1e-13 51.1 0.1 2e-13 50.2 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|336476960|ref|YP_004616101.1| - 5.4e-13 48.4 1.0 1.4e-09 37.2 0.3 2.9 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|336476960|ref|YP_004616101.1| - 4.3e-10 39.2 0.1 5.9e-09 35.4 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_His PF13393.1 gi|336476960|ref|YP_004616101.1| - 0.00058 19.0 0.0 0.0017 17.4 0.0 1.7 2 0 0 2 2 2 1 Histidyl-tRNA synthetase Peptidase_C97 PF05903.9 gi|336476960|ref|YP_004616101.1| - 0.086 12.6 0.1 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 PPPDE putative peptidase domain Radical_SAM PF04055.16 gi|336476961|ref|YP_004616102.1| - 1.7e-12 47.8 0.0 4e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336476961|ref|YP_004616102.1| - 1.7e-05 24.9 0.0 3.7e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain BATS PF06968.8 gi|336476961|ref|YP_004616102.1| - 0.00012 21.7 0.1 0.00067 19.4 0.0 2.1 1 1 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Fer4_14 PF13394.1 gi|336476961|ref|YP_004616102.1| - 0.0015 18.5 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ATP-grasp_4 PF13535.1 gi|336476962|ref|YP_004616103.1| - 2.4e-14 53.4 0.0 1.2e-13 51.2 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336476962|ref|YP_004616103.1| - 9.1e-09 35.3 0.1 2.2e-08 34.1 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336476962|ref|YP_004616103.1| - 8e-08 31.3 0.0 1.8e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|336476962|ref|YP_004616103.1| - 0.00088 18.8 0.1 4.7 6.7 0.0 3.6 4 0 0 4 4 4 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|336476962|ref|YP_004616103.1| - 0.0066 15.8 0.0 0.021 14.1 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus 3HCDH_N PF02737.13 gi|336476963|ref|YP_004616104.1| - 7.6e-05 22.4 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|336476963|ref|YP_004616104.1| - 0.00016 21.5 0.0 0.0003 20.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|336476963|ref|YP_004616104.1| - 0.0002 21.5 0.0 0.00049 20.3 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|336476963|ref|YP_004616104.1| - 0.0011 19.3 0.0 0.0041 17.5 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|336476963|ref|YP_004616104.1| - 0.0037 17.2 0.1 0.011 15.7 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|336476963|ref|YP_004616104.1| - 0.0049 16.0 0.0 0.0078 15.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|336476963|ref|YP_004616104.1| - 0.022 13.6 0.0 0.043 12.7 0.0 1.4 2 0 0 2 2 2 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|336476963|ref|YP_004616104.1| - 0.032 13.6 0.0 0.058 12.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|336476963|ref|YP_004616104.1| - 0.056 12.8 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HSP20 PF00011.16 gi|336476964|ref|YP_004616105.1| - 4.8e-11 42.4 0.3 1.4e-09 37.7 0.2 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|336476964|ref|YP_004616105.1| - 3.5e-05 24.2 0.0 5.6e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|336476964|ref|YP_004616105.1| - 0.00013 21.6 0.2 0.00019 21.1 0.2 1.2 1 0 0 1 1 1 1 GvpH Phage_holin PF04688.8 gi|336476965|ref|YP_004616106.1| - 0.061 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Phage lysis protein, holin Oxidored_q1 PF00361.15 gi|336476966|ref|YP_004616107.1| - 4.4e-66 222.8 15.4 4.4e-66 222.8 10.7 3.6 2 2 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|336476966|ref|YP_004616107.1| - 3.5e-16 58.9 12.7 3.5e-16 58.9 8.8 3.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|336476966|ref|YP_004616107.1| - 6.2e-08 32.0 1.0 6.2e-08 32.0 0.7 3.7 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MnhB PF04039.8 gi|336476967|ref|YP_004616108.1| - 1.5e-27 96.1 10.1 1.7e-27 95.9 7.0 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter PAP2 PF01569.16 gi|336476967|ref|YP_004616108.1| - 0.16 11.6 1.5 0.42 10.2 1.0 1.8 1 1 0 1 1 1 0 PAP2 superfamily Oxidored_q2 PF00420.19 gi|336476968|ref|YP_004616109.1| - 3.7e-28 96.9 3.3 4.3e-28 96.7 2.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PrgI PF12666.2 gi|336476968|ref|YP_004616109.1| - 1.9 8.6 7.3 16 5.6 3.0 2.1 2 0 0 2 2 2 0 PrgI family protein DUF1430 PF07242.6 gi|336476968|ref|YP_004616109.1| - 6.2 6.9 10.2 7 6.7 3.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1430) Flavi_NS4A PF01350.12 gi|336476968|ref|YP_004616109.1| - 8.3 5.9 7.9 0.38 10.3 1.6 1.6 2 0 0 2 2 2 0 Flavivirus non-structural protein NS4A Oxidored_q1 PF00361.15 gi|336476969|ref|YP_004616110.1| - 7e-60 202.5 22.6 7e-60 202.5 15.6 3.4 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|336476969|ref|YP_004616110.1| - 0.0016 18.3 9.3 0.0016 18.3 6.5 3.9 4 0 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus MNHE PF01899.11 gi|336476970|ref|YP_004616111.1| - 7.2e-44 149.1 0.2 8.5e-44 148.9 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.8 gi|336476971|ref|YP_004616112.1| - 4e-19 68.6 9.5 4e-19 68.6 6.6 1.5 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Arteri_Gl PF00951.13 gi|336476971|ref|YP_004616112.1| - 1.1 8.8 7.8 1.8 8.1 5.4 1.3 1 1 0 1 1 1 0 Arterivirus GL envelope glycoprotein Form-deh_trans PF09163.6 gi|336476971|ref|YP_004616112.1| - 1.9 8.0 7.2 35 3.9 0.0 3.1 3 0 0 3 3 3 0 Formate dehydrogenase N, transmembrane TMEMspv1-c74-12 PF11044.3 gi|336476971|ref|YP_004616112.1| - 6.1 6.4 6.8 5 6.7 0.5 2.4 1 1 1 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein DUF1656 PF07869.7 gi|336476971|ref|YP_004616112.1| - 8 6.3 8.5 12 5.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1656) PhaG_MnhG_YufB PF03334.9 gi|336476972|ref|YP_004616113.1| - 1.6e-24 85.7 8.5 1.9e-24 85.5 5.9 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Sua5_yciO_yrdC PF01300.13 gi|336476973|ref|YP_004616114.1| - 1.2e-55 187.5 0.1 1.8e-55 186.9 0.1 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|336476973|ref|YP_004616114.1| - 7.6e-29 100.3 0.0 1.2e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Rhodanese PF00581.15 gi|336476975|ref|YP_004616116.1| - 2.9e-34 117.8 0.6 8.5e-21 74.4 0.1 2.4 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|336476975|ref|YP_004616116.1| - 2.4e-13 50.1 0.3 1.4e-12 47.6 0.2 2.2 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily LAM_C PF12544.3 gi|336476976|ref|YP_004616117.1| - 1.3e-44 151.3 0.0 2.2e-44 150.5 0.0 1.4 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.16 gi|336476976|ref|YP_004616117.1| - 3.1e-12 46.9 0.1 9.6e-12 45.3 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336476976|ref|YP_004616117.1| - 0.00039 20.5 0.7 0.0063 16.6 0.0 2.8 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336476976|ref|YP_004616117.1| - 0.00043 20.3 2.5 0.00093 19.2 0.0 2.6 3 1 1 4 4 4 1 4Fe-4S single cluster domain Acetyltransf_10 PF13673.1 gi|336476977|ref|YP_004616118.1| - 4.9e-09 36.3 0.0 7.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336476977|ref|YP_004616118.1| - 2.9e-05 23.9 0.0 0.06 13.1 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336476977|ref|YP_004616118.1| - 7.8e-05 22.7 0.0 0.0002 21.4 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336476977|ref|YP_004616118.1| - 0.0049 16.8 0.0 0.0081 16.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PolC_DP2 PF03833.8 gi|336476978|ref|YP_004616119.1| - 0 1214.1 0.0 0 1213.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF512 PF04459.7 gi|336476979|ref|YP_004616120.1| - 1.2e-20 73.5 0.0 1.7e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|336476979|ref|YP_004616120.1| - 6.6e-12 45.9 4.3 1.9e-10 41.1 2.9 2.7 2 1 0 2 2 2 1 Radical SAM superfamily PAC2 PF09754.4 gi|336476979|ref|YP_004616120.1| - 0.027 14.3 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 PAC2 family Fer4_12 PF13353.1 gi|336476979|ref|YP_004616120.1| - 0.46 10.6 5.9 2.3 8.3 3.7 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_7 PF03441.9 gi|336476980|ref|YP_004616121.1| - 4.6e-91 304.8 0.7 6e-91 304.4 0.5 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|336476980|ref|YP_004616121.1| - 9.1e-47 158.8 0.0 1.6e-46 158.0 0.0 1.4 1 0 0 1 1 1 1 DNA photolyase LNS2 PF08235.8 gi|336476980|ref|YP_004616121.1| - 0.059 12.9 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 LNS2 (Lipin/Ned1/Smp2) BBE PF08031.7 gi|336476980|ref|YP_004616121.1| - 0.1 12.5 3.7 7.2 6.6 0.0 3.9 3 1 1 4 4 4 0 Berberine and berberine like DUF457 PF04307.9 gi|336476981|ref|YP_004616122.1| - 8.1e-16 57.7 7.4 1.1e-15 57.2 5.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1212 PF06738.7 gi|336476981|ref|YP_004616122.1| - 0.39 10.1 3.4 0.69 9.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Git3_C PF11970.3 gi|336476981|ref|YP_004616122.1| - 1.3 8.8 8.9 3 7.6 1.0 3.0 2 1 1 3 3 3 0 G protein-coupled glucose receptor regulating Gpa2 C-term RseC_MucC PF04246.7 gi|336476981|ref|YP_004616122.1| - 5.9 6.4 6.1 3.3 7.2 0.8 2.5 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Malic_M PF03949.10 gi|336476982|ref|YP_004616123.1| - 6.8e-71 238.8 4.9 9.6e-71 238.3 3.4 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|336476982|ref|YP_004616123.1| - 2.3e-33 115.2 0.5 4.6e-31 107.7 0.3 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|336476982|ref|YP_004616123.1| - 0.00015 21.5 0.6 0.0012 18.5 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_3 PF13738.1 gi|336476982|ref|YP_004616123.1| - 0.00026 21.0 0.0 0.0015 18.6 0.0 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ELFV_dehydrog PF00208.16 gi|336476982|ref|YP_004616123.1| - 0.00054 19.6 0.9 0.0016 18.0 0.2 1.9 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.15 gi|336476982|ref|YP_004616123.1| - 0.00093 19.3 0.4 0.0021 18.1 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|336476982|ref|YP_004616123.1| - 0.0074 16.6 0.8 0.0074 16.6 0.5 2.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|336476982|ref|YP_004616123.1| - 0.011 15.6 0.2 0.036 13.9 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|336476982|ref|YP_004616123.1| - 0.014 14.9 2.1 0.13 11.8 1.4 2.2 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|336476982|ref|YP_004616123.1| - 0.017 14.9 0.4 0.017 14.9 0.3 2.3 2 1 0 2 2 2 0 ThiF family Pribosyltran_N PF13793.1 gi|336476982|ref|YP_004616123.1| - 0.025 14.3 0.0 0.049 13.3 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of ribose phosphate pyrophosphokinase FAD_binding_3 PF01494.14 gi|336476982|ref|YP_004616123.1| - 0.055 12.5 0.0 0.083 11.9 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|336476982|ref|YP_004616123.1| - 0.075 12.1 1.8 0.73 8.9 0.4 2.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DXP_synthase_N PF13292.1 gi|336476982|ref|YP_004616123.1| - 0.16 10.8 1.1 0.67 8.8 0.3 2.1 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Lyase_1 PF00206.15 gi|336476983|ref|YP_004616124.1| - 2.3e-98 329.2 0.1 2.9e-98 328.9 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|336476983|ref|YP_004616124.1| - 4.8e-15 55.3 0.1 1.3e-14 54.0 0.1 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus FAD_binding_2 PF00890.19 gi|336476984|ref|YP_004616125.1| - 7.7e-118 393.9 0.1 9.3e-118 393.6 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|336476984|ref|YP_004616125.1| - 2.6e-41 140.4 0.4 4.2e-41 139.8 0.3 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|336476984|ref|YP_004616125.1| - 6.2e-12 45.0 1.5 6.4e-10 38.4 1.0 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336476984|ref|YP_004616125.1| - 4.1e-10 39.8 0.2 8.2e-07 29.0 0.1 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336476984|ref|YP_004616125.1| - 1.1e-08 33.9 0.1 0.00015 20.3 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|336476984|ref|YP_004616125.1| - 1.3e-06 27.5 0.3 0.00013 20.9 0.1 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|336476984|ref|YP_004616125.1| - 5.7e-06 25.6 1.5 4.2e-05 22.8 1.0 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336476984|ref|YP_004616125.1| - 0.00015 21.7 0.2 0.00069 19.5 0.1 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|336476984|ref|YP_004616125.1| - 0.00076 18.6 0.6 0.015 14.4 0.1 2.7 3 0 0 3 3 3 1 Thi4 family Pyr_redox PF00070.22 gi|336476984|ref|YP_004616125.1| - 0.0014 18.9 0.1 0.0034 17.7 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336476984|ref|YP_004616125.1| - 0.0064 15.5 0.3 0.012 14.6 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|336476984|ref|YP_004616125.1| - 0.048 13.9 0.0 0.089 13.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|336476984|ref|YP_004616125.1| - 0.059 13.4 0.3 1 9.3 0.2 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336476984|ref|YP_004616125.1| - 0.074 11.9 0.1 0.12 11.2 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer2_3 PF13085.1 gi|336476985|ref|YP_004616126.1| - 2.1e-30 104.7 0.0 2.1e-30 104.7 0.0 1.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|336476985|ref|YP_004616126.1| - 4.6e-08 32.9 4.4 4.6e-08 32.9 3.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|336476985|ref|YP_004616126.1| - 1.8e-05 24.3 4.4 7.7e-05 22.3 0.4 2.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.1 gi|336476985|ref|YP_004616126.1| - 3.5e-05 24.1 1.0 3.5e-05 24.1 0.7 2.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336476985|ref|YP_004616126.1| - 0.00016 21.9 3.1 0.00016 21.9 2.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336476985|ref|YP_004616126.1| - 0.0018 18.0 7.2 0.0018 18.0 5.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336476985|ref|YP_004616126.1| - 0.0055 16.9 15.5 0.12 12.6 0.0 3.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336476985|ref|YP_004616126.1| - 0.0075 16.6 8.5 0.0075 16.6 5.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336476985|ref|YP_004616126.1| - 0.22 12.1 8.2 2.1 8.9 0.5 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|336476985|ref|YP_004616126.1| - 8.5 7.0 23.4 2.9 8.4 3.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain GpcrRhopsn4 PF10192.4 gi|336476986|ref|YP_004616127.1| - 0.0091 15.2 0.4 0.0095 15.1 0.3 1.1 1 0 0 1 1 1 1 Rhodopsin-like GPCR transmembrane domain YfhO PF09586.5 gi|336476986|ref|YP_004616127.1| - 0.019 13.0 0.9 0.022 12.8 0.6 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO FecCD PF01032.13 gi|336476986|ref|YP_004616127.1| - 0.03 13.1 2.6 0.033 13.0 1.8 1.0 1 0 0 1 1 1 0 FecCD transport family DUF165 PF02592.10 gi|336476986|ref|YP_004616127.1| - 0.056 13.6 0.8 0.071 13.2 0.6 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, YhhQ family COG1738 5TM-5TMR_LYT PF07694.7 gi|336476986|ref|YP_004616127.1| - 0.13 11.5 3.8 0.16 11.2 2.6 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT DUF973 PF06157.6 gi|336476986|ref|YP_004616127.1| - 0.2 10.6 4.8 0.23 10.4 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3792 PF12670.2 gi|336476986|ref|YP_004616127.1| - 1.1 9.1 6.2 0.31 10.9 1.6 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3792) DUF3021 PF11457.3 gi|336476986|ref|YP_004616127.1| - 1.4 8.7 5.6 0.98 9.3 2.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) TPR_11 PF13414.1 gi|336476987|ref|YP_004616128.1| - 5.6e-36 122.0 13.5 4.4e-16 58.2 2.2 3.1 2 1 1 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|336476987|ref|YP_004616128.1| - 6.5e-36 119.3 14.3 3.8e-07 29.5 0.8 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|336476987|ref|YP_004616128.1| - 6e-32 107.9 17.3 1.5e-06 27.5 1.8 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|336476987|ref|YP_004616128.1| - 4.1e-22 77.9 10.1 9.3e-12 44.7 0.1 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|336476987|ref|YP_004616128.1| - 4.4e-22 78.1 0.1 9.1e-10 38.9 0.0 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|336476987|ref|YP_004616128.1| - 5.2e-22 75.9 22.9 5e-06 25.9 2.4 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|336476987|ref|YP_004616128.1| - 2.7e-20 71.0 0.0 0.0017 18.8 0.0 5.1 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|336476987|ref|YP_004616128.1| - 2.1e-17 63.1 1.1 3.1e-07 30.6 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|336476987|ref|YP_004616128.1| - 2.1e-13 49.3 20.3 0.00016 21.6 0.0 6.7 6 2 0 6 6 6 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|336476987|ref|YP_004616128.1| - 3.7e-13 49.4 7.5 0.00011 22.2 0.0 3.2 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|336476987|ref|YP_004616128.1| - 8.1e-13 47.9 7.1 0.0028 18.0 0.1 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|336476987|ref|YP_004616128.1| - 2.4e-12 45.6 7.4 0.064 13.0 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|336476987|ref|YP_004616128.1| - 1.2e-11 44.3 0.0 0.0011 18.7 0.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_15 PF13429.1 gi|336476987|ref|YP_004616128.1| - 3.2e-08 32.9 0.1 0.00039 19.5 0.0 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|336476987|ref|YP_004616128.1| - 5.9e-08 32.5 0.4 0.011 15.3 0.0 2.7 3 0 0 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_10 PF13374.1 gi|336476987|ref|YP_004616128.1| - 6.1e-05 22.8 5.0 2.6 8.0 0.0 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat MIT PF04212.13 gi|336476987|ref|YP_004616128.1| - 0.00016 21.4 6.2 1.4 8.8 0.2 4.9 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain TPR_20 PF14561.1 gi|336476987|ref|YP_004616128.1| - 0.00023 21.2 0.0 0.43 10.7 0.0 3.2 2 1 2 4 4 4 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|336476987|ref|YP_004616128.1| - 0.00026 20.8 1.5 1.1 9.0 0.1 4.1 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_5 PF12688.2 gi|336476987|ref|YP_004616128.1| - 0.00073 19.5 0.0 0.016 15.2 0.0 2.6 2 1 0 2 2 2 1 Tetratrico peptide repeat NARP1 PF12569.3 gi|336476987|ref|YP_004616128.1| - 0.0019 17.0 6.1 0.043 12.5 0.5 3.0 1 1 3 4 4 4 1 NMDA receptor-regulated protein 1 SHNi-TPR PF10516.4 gi|336476987|ref|YP_004616128.1| - 0.0029 16.8 0.0 9.6 5.5 0.0 3.4 3 0 0 3 3 3 0 SHNi-TPR Paf67 PF10255.4 gi|336476987|ref|YP_004616128.1| - 0.012 14.4 4.0 1.3 7.8 0.1 3.2 2 1 1 3 3 3 0 RNA polymerase I-associated factor PAF67 Apc5 PF12862.2 gi|336476987|ref|YP_004616128.1| - 0.014 15.2 1.6 0.89 9.4 1.1 2.7 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 DUF2225 PF09986.4 gi|336476987|ref|YP_004616128.1| - 0.032 13.6 6.4 0.18 11.2 1.2 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) PPTA PF01239.17 gi|336476987|ref|YP_004616128.1| - 0.039 13.3 1.5 1.9 7.9 0.0 3.5 4 0 0 4 4 4 0 Protein prenyltransferase alpha subunit repeat BTAD PF03704.12 gi|336476987|ref|YP_004616128.1| - 0.075 13.3 0.0 0.49 10.6 0.0 2.2 2 1 0 2 2 2 0 Bacterial transcriptional activator domain TRAPPC9-Trs120 PF08626.6 gi|336476987|ref|YP_004616128.1| - 0.085 10.1 0.0 0.13 9.5 0.0 1.1 1 0 0 1 1 1 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit TPR_3 PF07720.7 gi|336476987|ref|YP_004616128.1| - 0.23 11.3 14.7 5.3 6.9 0.0 5.3 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|336476987|ref|YP_004616128.1| - 0.39 10.6 3.4 6.4 6.7 1.3 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|336476987|ref|YP_004616128.1| - 0.85 9.5 10.5 1 9.3 0.6 4.2 5 0 0 5 5 4 0 Fis1 C-terminal tetratricopeptide repeat Tic20 PF09685.5 gi|336476988|ref|YP_004616129.1| - 1e-13 51.1 6.8 1.2e-13 50.9 4.7 1.0 1 0 0 1 1 1 1 Tic20-like protein DUF1282 PF06930.7 gi|336476988|ref|YP_004616129.1| - 0.0055 16.3 4.3 0.0071 16.0 3.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF2269 PF10027.4 gi|336476988|ref|YP_004616129.1| - 0.044 13.5 3.1 0.051 13.3 2.2 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF4396 PF14342.1 gi|336476988|ref|YP_004616129.1| - 0.048 13.7 2.1 0.059 13.4 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) DUF606 PF04657.8 gi|336476988|ref|YP_004616129.1| - 0.053 13.6 6.1 0.11 12.6 3.4 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF606 Dicistro_VP4 PF11492.3 gi|336476988|ref|YP_004616129.1| - 0.097 12.6 0.8 23 5.0 0.0 2.8 2 1 0 2 2 2 0 Cricket paralysis virus, VP4 Arif-1 PF06770.6 gi|336476988|ref|YP_004616129.1| - 1.1 8.5 3.5 1.4 8.2 2.5 1.1 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) FUSC-like PF12805.2 gi|336476988|ref|YP_004616129.1| - 1.7 7.5 5.1 1.9 7.3 3.5 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF2407_C PF13373.1 gi|336476988|ref|YP_004616129.1| - 2 8.3 4.7 0.41 10.5 0.9 1.6 1 1 1 2 2 2 0 DUF2407 C-terminal domain DUF1453 PF07301.6 gi|336476989|ref|YP_004616130.1| - 0.027 14.3 4.2 0.047 13.5 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) PGPGW PF09656.5 gi|336476989|ref|YP_004616130.1| - 0.13 11.5 5.9 1.9 7.8 0.0 3.1 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) FMN_red PF03358.10 gi|336476990|ref|YP_004616131.1| - 3.3e-17 62.3 0.0 5.9e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336476990|ref|YP_004616131.1| - 2.2e-09 37.1 0.0 3.1e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Aldedh PF00171.17 gi|336476991|ref|YP_004616132.1| - 3.9e-140 467.2 0.0 4.4e-140 467.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Zeta_toxin PF06414.7 gi|336476991|ref|YP_004616132.1| - 0.059 12.4 0.0 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin FMN_red PF03358.10 gi|336476992|ref|YP_004616133.1| - 5.1e-16 58.5 0.0 8.3e-16 57.8 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Colicin_V PF02674.11 gi|336476993|ref|YP_004616134.1| - 0.011 15.6 0.9 0.012 15.4 0.6 1.2 1 0 0 1 1 1 0 Colicin V production protein DUF3487 PF11990.3 gi|336476993|ref|YP_004616134.1| - 0.011 15.1 0.3 0.014 14.7 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3487) PrgI PF12666.2 gi|336476993|ref|YP_004616134.1| - 0.013 15.6 1.6 0.018 15.1 1.1 1.2 1 0 0 1 1 1 0 PrgI family protein DUF4233 PF14017.1 gi|336476993|ref|YP_004616134.1| - 0.016 15.1 4.4 0.048 13.5 3.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) RseC_MucC PF04246.7 gi|336476993|ref|YP_004616134.1| - 0.02 14.4 2.5 0.024 14.2 0.9 1.6 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF2238 PF09997.4 gi|336476993|ref|YP_004616134.1| - 0.021 14.2 0.2 0.03 13.7 0.1 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) Polysacc_deac_1 PF01522.16 gi|336476993|ref|YP_004616134.1| - 0.031 13.8 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide deacetylase DUF3329 PF11808.3 gi|336476993|ref|YP_004616134.1| - 0.06 13.4 2.1 0.096 12.7 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) Wzy_C PF04932.10 gi|336476993|ref|YP_004616134.1| - 0.079 12.7 0.3 0.076 12.7 0.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase Cag12 PF13117.1 gi|336476993|ref|YP_004616134.1| - 0.088 12.7 0.1 0.14 12.0 0.1 1.3 1 1 0 1 1 1 0 Cag pathogenicity island protein Cag12 DUF1673 PF07895.6 gi|336476994|ref|YP_004616135.1| - 0.0008 18.9 0.9 0.0013 18.2 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) SUR7 PF06687.7 gi|336476994|ref|YP_004616135.1| - 0.029 13.9 7.1 0.049 13.1 4.9 1.3 1 0 0 1 1 1 0 SUR7/PalI family UPF0697 PF15117.1 gi|336476994|ref|YP_004616135.1| - 0.041 13.6 0.1 0.092 12.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 FERM_C PF09380.5 gi|336476994|ref|YP_004616135.1| - 0.059 13.5 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 FERM C-terminal PH-like domain CbiQ PF02361.11 gi|336476994|ref|YP_004616135.1| - 0.1 12.1 5.8 0.12 11.9 4.0 1.1 1 0 0 1 1 1 0 Cobalt transport protein DUF4239 PF14023.1 gi|336476994|ref|YP_004616135.1| - 0.2 10.9 5.1 0.3 10.4 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) zf-C2H2_4 PF13894.1 gi|336476995|ref|YP_004616136.1| - 6.4e-07 29.2 0.2 9.9e-07 28.6 0.2 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|336476995|ref|YP_004616136.1| - 1e-06 28.7 0.4 1.7e-06 27.9 0.3 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-met PF12874.2 gi|336476995|ref|YP_004616136.1| - 3e-05 24.0 0.1 6.2e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.1 gi|336476995|ref|YP_004616136.1| - 0.00037 20.2 0.3 0.00049 19.9 0.2 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|336476995|ref|YP_004616136.1| - 0.00072 19.6 1.7 0.00072 19.6 1.2 1.7 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.2 gi|336476995|ref|YP_004616136.1| - 0.0029 17.6 2.9 0.003 17.6 2.0 1.1 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) DUF3449 PF11931.3 gi|336476995|ref|YP_004616136.1| - 0.022 14.2 2.6 0.024 14.1 1.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) DUF629 PF04780.7 gi|336476995|ref|YP_004616136.1| - 0.027 13.0 2.2 0.028 12.9 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-H2C2_2 PF13465.1 gi|336476995|ref|YP_004616136.1| - 0.27 11.6 5.2 0.41 11.0 0.5 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Glyco_hydro_15 PF00723.16 gi|336476996|ref|YP_004616137.1| - 6e-19 67.9 0.1 1.9e-13 49.8 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|336476996|ref|YP_004616137.1| - 0.00016 20.4 0.0 0.00055 18.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF608 Glyco_hydro_65m PF03632.10 gi|336476996|ref|YP_004616137.1| - 0.035 12.7 0.0 0.066 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65 central catalytic domain Pyrophosphatase PF00719.14 gi|336476998|ref|YP_004616139.1| - 1e-55 187.4 0.1 1.2e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Helicase_C_3 PF13625.1 gi|336476998|ref|YP_004616139.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Helicase conserved C-terminal domain SufE PF02657.10 gi|336477000|ref|YP_004616141.1| - 3e-31 107.6 0.0 3.4e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain Aminotran_5 PF00266.14 gi|336477001|ref|YP_004616142.1| - 1.9e-127 425.0 0.0 2.2e-127 424.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|336477001|ref|YP_004616142.1| - 1e-10 41.1 0.0 1.3e-10 40.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336477001|ref|YP_004616142.1| - 4.6e-09 35.7 0.1 6.9e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|336477001|ref|YP_004616142.1| - 1.9e-05 23.3 0.2 4.5e-05 22.1 0.2 1.6 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Cys_Met_Meta_PP PF01053.15 gi|336477001|ref|YP_004616142.1| - 4.7e-05 21.8 0.1 7.2e-05 21.2 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|336477001|ref|YP_004616142.1| - 0.00025 20.3 0.0 0.0003 20.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|336477001|ref|YP_004616142.1| - 0.006 15.0 0.1 0.0084 14.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Alpha-amylase PF00128.19 gi|336477001|ref|YP_004616142.1| - 0.049 13.0 0.3 4 6.7 0.0 2.5 2 0 0 2 2 2 0 Alpha amylase, catalytic domain Methyltransf_33 PF10017.4 gi|336477002|ref|YP_004616143.1| - 9.5e-42 141.8 0.5 1.4e-41 141.3 0.3 1.2 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Rhodanese PF00581.15 gi|336477003|ref|YP_004616144.1| - 3e-39 133.8 1.7 1.4e-15 57.6 0.0 3.8 2 1 2 4 4 4 3 Rhodanese-like domain Terminase_5 PF06056.7 gi|336477004|ref|YP_004616145.1| - 1.2e-06 27.9 0.0 1.6e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|336477004|ref|YP_004616145.1| - 5.7e-06 25.8 0.0 8.1e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336477004|ref|YP_004616145.1| - 6.2e-05 22.9 0.0 9.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.2 gi|336477004|ref|YP_004616145.1| - 0.00023 20.9 4.3 0.00034 20.3 3.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|336477004|ref|YP_004616145.1| - 0.00046 20.0 0.2 0.00076 19.3 0.1 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1 PF03811.8 gi|336477004|ref|YP_004616145.1| - 0.0011 18.3 6.3 0.002 17.5 4.3 1.5 1 0 0 1 1 1 1 InsA N-terminal domain HTH_29 PF13551.1 gi|336477004|ref|YP_004616145.1| - 0.0033 17.5 0.0 0.0047 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix zf-Mss51 PF13824.1 gi|336477004|ref|YP_004616145.1| - 0.024 14.4 0.9 0.051 13.4 0.6 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_38 PF13936.1 gi|336477004|ref|YP_004616145.1| - 0.026 14.0 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336477004|ref|YP_004616145.1| - 0.028 13.8 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Elf1 PF05129.8 gi|336477004|ref|YP_004616145.1| - 0.03 14.0 0.9 0.059 13.0 0.7 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zinc-ribbons_6 PF07191.7 gi|336477004|ref|YP_004616145.1| - 0.046 13.5 0.6 0.079 12.7 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|336477004|ref|YP_004616145.1| - 0.064 13.2 2.7 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain HTH_Tnp_1 PF01527.15 gi|336477004|ref|YP_004616145.1| - 0.088 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Transposase Rubredoxin PF00301.15 gi|336477004|ref|YP_004616145.1| - 0.18 11.6 3.2 0.66 9.8 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|336477004|ref|YP_004616145.1| - 0.23 11.1 4.0 0.74 9.5 1.7 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Ribosomal_L44 PF00935.14 gi|336477004|ref|YP_004616145.1| - 0.6 10.1 3.3 18 5.4 0.1 2.8 2 1 1 3 3 3 0 Ribosomal protein L44 zf-TFIIB PF13453.1 gi|336477004|ref|YP_004616145.1| - 0.69 9.1 2.9 1.4 8.1 2.0 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger TFIIS_C PF01096.13 gi|336477004|ref|YP_004616145.1| - 8.7 6.0 7.4 5.6 6.6 0.5 2.5 3 0 0 3 3 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|336477004|ref|YP_004616145.1| - 9.7 6.3 7.7 2.6e+02 1.7 5.6 2.6 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1638 PF07796.6 gi|336477005|ref|YP_004616146.1| - 1.2e-32 112.8 0.0 1.7e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) MFS_1 PF07690.11 gi|336477006|ref|YP_004616147.1| - 5.5e-46 156.8 53.7 5.5e-46 156.8 37.2 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|336477006|ref|YP_004616147.1| - 8.5e-10 37.3 21.3 1.3e-09 36.7 14.8 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|336477006|ref|YP_004616147.1| - 1.3e-08 33.8 15.0 1.3e-08 33.8 10.4 2.9 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|336477006|ref|YP_004616147.1| - 1.5e-06 26.8 8.4 1.5e-06 26.8 5.8 2.9 1 1 2 3 3 3 2 MFS/sugar transport protein UPF0047 PF01894.12 gi|336477007|ref|YP_004616148.1| - 9.3e-39 131.9 0.0 1.1e-38 131.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DDE_Tnp_1 PF01609.16 gi|336477009|ref|YP_004616150.1| - 1.3e-06 28.1 2.2 4.4e-06 26.4 1.5 1.9 1 1 0 1 1 1 1 Transposase DDE domain HisKA_2 PF07568.7 gi|336477011|ref|YP_004616152.1| - 2.3e-25 88.2 3.5 5.9e-25 86.9 2.4 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|336477011|ref|YP_004616152.1| - 1e-16 60.7 0.1 2.9e-15 56.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|336477011|ref|YP_004616152.1| - 8.7e-13 48.5 0.6 9.4e-05 22.7 0.1 3.2 2 1 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|336477011|ref|YP_004616152.1| - 4.7e-11 42.3 0.0 9.1e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|336477011|ref|YP_004616152.1| - 1.9e-09 37.3 0.4 0.00011 21.9 0.3 3.3 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336477011|ref|YP_004616152.1| - 1.9e-09 37.0 0.0 1.3e-08 34.3 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|336477011|ref|YP_004616152.1| - 3.9e-08 33.1 0.0 7.1e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|336477011|ref|YP_004616152.1| - 1.2e-06 28.8 0.3 2.1e-06 28.0 0.2 1.4 1 0 0 1 1 1 1 HWE histidine kinase PAS_4 PF08448.5 gi|336477011|ref|YP_004616152.1| - 4.6e-05 23.4 0.0 7.5 6.6 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.1 gi|336477011|ref|YP_004616152.1| - 0.012 15.8 0.0 0.064 13.5 0.0 2.3 2 0 0 2 2 2 0 PAS domain PAS_7 PF12860.2 gi|336477011|ref|YP_004616152.1| - 0.013 15.5 0.1 0.41 10.6 0.0 2.4 2 0 0 2 2 2 0 PAS fold SHP PF03579.8 gi|336477011|ref|YP_004616152.1| - 0.52 9.6 8.1 0.39 10.0 0.1 3.3 3 0 0 3 3 3 0 Small hydrophobic protein DUF2769 PF10967.3 gi|336477012|ref|YP_004616153.1| - 4.9e-12 45.9 16.9 3.9e-11 43.0 11.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2769) Cys_rich_CWC PF14375.1 gi|336477012|ref|YP_004616153.1| - 0.039 13.8 7.2 1.7 8.6 1.1 2.4 2 1 0 2 2 2 0 Cysteine-rich CWC zf-Paramyx-P PF13008.2 gi|336477012|ref|YP_004616153.1| - 3.8 6.7 12.4 0.46 9.7 1.7 2.2 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Prismane PF03063.15 gi|336477013|ref|YP_004616154.1| - 3e-171 570.3 0.0 3.6e-171 570.0 0.0 1.1 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family SNARE_assoc PF09335.6 gi|336477014|ref|YP_004616155.1| - 1.7e-09 37.9 6.1 1.7e-09 37.9 4.3 2.1 1 1 1 2 2 2 1 SNARE associated Golgi protein Ferric_reduct PF01794.14 gi|336477015|ref|YP_004616156.1| - 2.5e-05 24.3 8.1 2.5e-05 24.3 5.6 2.2 2 1 1 3 3 3 1 Ferric reductase like transmembrane component DUF2919 PF11143.3 gi|336477015|ref|YP_004616156.1| - 0.25 11.1 4.2 0.16 11.7 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) Phosphorylase PF00343.15 gi|336477016|ref|YP_004616157.1| - 9e-26 89.9 0.2 7.9e-18 63.7 0.0 2.9 3 0 0 3 3 3 3 Carbohydrate phosphorylase DS PF01916.12 gi|336477017|ref|YP_004616158.1| - 1.6e-78 263.8 0.5 1.9e-78 263.6 0.4 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DHHA1 PF02272.14 gi|336477017|ref|YP_004616158.1| - 0.0026 17.4 0.0 0.0073 15.9 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain ArsR PF09824.4 gi|336477018|ref|YP_004616159.1| - 7.9e-70 233.3 0.1 8.9e-70 233.1 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator DUF387 PF04079.11 gi|336477018|ref|YP_004616159.1| - 0.015 14.7 0.0 0.084 12.2 0.0 1.9 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Imm48 PF15587.1 gi|336477018|ref|YP_004616159.1| - 0.074 12.4 0.1 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Immunity protein 48 HTH_24 PF13412.1 gi|336477019|ref|YP_004616160.1| - 9.2e-12 44.1 0.4 3.2e-11 42.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336477019|ref|YP_004616160.1| - 1.6e-09 37.3 0.0 5.2e-09 35.6 0.0 1.8 2 0 0 2 2 1 1 MarR family MarR PF01047.17 gi|336477019|ref|YP_004616160.1| - 1.1e-08 34.6 0.0 5.1e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|336477019|ref|YP_004616160.1| - 1.8e-07 31.3 0.0 5.5e-07 29.8 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336477019|ref|YP_004616160.1| - 5e-07 29.2 0.2 1.4e-06 27.8 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|336477019|ref|YP_004616160.1| - 1.1e-06 28.3 0.0 2.7e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|336477019|ref|YP_004616160.1| - 1e-05 25.2 0.1 2.2e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|336477019|ref|YP_004616160.1| - 1.6e-05 24.9 0.0 3.7e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_3 PF01381.17 gi|336477019|ref|YP_004616160.1| - 7.7e-05 22.4 0.1 0.0014 18.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_IclR PF09339.5 gi|336477019|ref|YP_004616160.1| - 9.3e-05 21.9 0.0 0.0003 20.2 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|336477019|ref|YP_004616160.1| - 0.00044 20.3 0.0 0.0014 18.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|336477019|ref|YP_004616160.1| - 0.00049 19.6 0.0 0.001 18.6 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.14 gi|336477019|ref|YP_004616160.1| - 0.0011 18.8 0.0 0.0031 17.4 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|336477019|ref|YP_004616160.1| - 0.0013 18.3 0.0 0.0033 17.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.3 gi|336477019|ref|YP_004616160.1| - 0.003 17.3 0.0 0.0072 16.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|336477019|ref|YP_004616160.1| - 0.0059 16.2 0.0 0.016 14.8 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|336477019|ref|YP_004616160.1| - 0.0071 16.3 0.0 0.017 15.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|336477019|ref|YP_004616160.1| - 0.01 15.3 0.0 0.025 14.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.16 gi|336477019|ref|YP_004616160.1| - 0.011 15.1 0.0 0.037 13.4 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|336477019|ref|YP_004616160.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|336477019|ref|YP_004616160.1| - 0.013 15.0 0.0 0.033 13.8 0.0 1.7 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Mnd1 PF03962.10 gi|336477019|ref|YP_004616160.1| - 0.015 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Mnd1 family LexA_DNA_bind PF01726.11 gi|336477019|ref|YP_004616160.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.2 gi|336477019|ref|YP_004616160.1| - 0.031 14.0 0.0 0.14 12.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain KorB PF08535.5 gi|336477019|ref|YP_004616160.1| - 0.041 14.0 0.0 0.099 12.8 0.0 1.7 1 0 0 1 1 1 0 KorB domain HTH_34 PF13601.1 gi|336477019|ref|YP_004616160.1| - 0.043 13.8 0.0 0.13 12.3 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|336477019|ref|YP_004616160.1| - 0.045 13.8 0.2 0.15 12.1 0.1 1.9 1 1 0 1 1 1 0 Mrr N-terminal domain Sigma70_r4_2 PF08281.7 gi|336477019|ref|YP_004616160.1| - 0.077 12.4 0.1 0.35 10.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|336477019|ref|YP_004616160.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Phage_rep_O PF04492.8 gi|336477019|ref|YP_004616160.1| - 0.083 13.1 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage replication protein O FaeA PF04703.7 gi|336477019|ref|YP_004616160.1| - 0.085 13.0 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein DUF387 PF04079.11 gi|336477019|ref|YP_004616160.1| - 0.086 12.2 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_AsnC-type PF13404.1 gi|336477019|ref|YP_004616160.1| - 0.088 12.3 0.0 0.42 10.1 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain EAP30 PF04157.11 gi|336477019|ref|YP_004616160.1| - 0.12 11.4 0.0 0.27 10.3 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family Metallophos_2 PF12850.2 gi|336477020|ref|YP_004616161.1| - 1.1e-27 96.7 0.0 1.3e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336477020|ref|YP_004616161.1| - 2.8e-09 36.6 0.7 0.00064 19.1 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|336477023|ref|YP_004616164.1| - 0.0039 16.9 0.1 0.013 15.3 0.1 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Pox_polyA_pol_N PF12630.2 gi|336477023|ref|YP_004616164.1| - 0.11 12.5 1.8 0.25 11.4 1.2 1.6 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain DUF1493 PF07377.7 gi|336477023|ref|YP_004616164.1| - 0.12 12.5 0.8 0.31 11.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1493) TM_helix PF05552.7 gi|336477024|ref|YP_004616165.1| - 5.8e-22 77.1 44.7 1.5e-11 43.7 3.1 5.2 5 0 0 5 5 5 3 Conserved TM helix TauE PF01925.14 gi|336477025|ref|YP_004616166.1| - 1.8e-31 109.4 30.5 2.1e-31 109.2 21.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE LigD_N PF13298.1 gi|336477026|ref|YP_004616167.1| - 1.7e-43 147.0 0.0 2.5e-43 146.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) SfsA PF03749.8 gi|336477027|ref|YP_004616168.1| - 4.4e-59 199.5 0.0 4.9e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Methyltransf_31 PF13847.1 gi|336477028|ref|YP_004616169.1| - 3.4e-24 85.1 0.1 6e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336477028|ref|YP_004616169.1| - 1.1e-23 83.4 0.0 1.9e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336477028|ref|YP_004616169.1| - 1.3e-19 70.4 0.0 5.1e-19 68.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336477028|ref|YP_004616169.1| - 3.4e-17 62.7 0.0 5.5e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336477028|ref|YP_004616169.1| - 1.2e-14 54.0 0.1 5.1e-14 51.9 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336477028|ref|YP_004616169.1| - 1.2e-13 51.3 0.0 2.7e-13 50.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477028|ref|YP_004616169.1| - 8.2e-13 48.9 0.0 1.3e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336477028|ref|YP_004616169.1| - 7.2e-11 41.7 0.0 1.5e-10 40.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|336477028|ref|YP_004616169.1| - 1.4e-08 33.9 0.1 2.4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_8 PF05148.10 gi|336477028|ref|YP_004616169.1| - 1.6e-06 27.9 0.1 3.8e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|336477028|ref|YP_004616169.1| - 1.1e-05 24.6 0.0 2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|336477028|ref|YP_004616169.1| - 5.1e-05 22.7 0.0 8.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|336477028|ref|YP_004616169.1| - 5.6e-05 23.1 0.0 9.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336477028|ref|YP_004616169.1| - 0.00013 21.1 0.1 0.00025 20.2 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) N2227 PF07942.7 gi|336477028|ref|YP_004616169.1| - 0.00014 20.9 0.2 0.16 10.9 0.0 2.3 1 1 1 2 2 2 2 N2227-like protein N6_Mtase PF02384.11 gi|336477028|ref|YP_004616169.1| - 0.00026 20.2 0.1 0.00049 19.2 0.1 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase DREV PF05219.7 gi|336477028|ref|YP_004616169.1| - 0.00026 19.9 0.0 0.0004 19.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.7 gi|336477028|ref|YP_004616169.1| - 0.00049 19.4 0.0 0.001 18.4 0.0 1.4 2 0 0 2 2 2 1 AdoMet dependent proline di-methyltransferase FmrO PF07091.6 gi|336477028|ref|YP_004616169.1| - 0.00062 18.8 0.0 0.001 18.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) UPF0020 PF01170.13 gi|336477028|ref|YP_004616169.1| - 0.001 18.7 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DOT1 PF08123.8 gi|336477028|ref|YP_004616169.1| - 0.0013 18.0 0.0 0.0021 17.3 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 PCMT PF01135.14 gi|336477028|ref|YP_004616169.1| - 0.0014 18.1 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|336477028|ref|YP_004616169.1| - 0.0048 16.5 0.0 0.0078 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|336477028|ref|YP_004616169.1| - 0.0048 15.6 0.0 0.0071 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|336477028|ref|YP_004616169.1| - 0.005 16.2 0.0 0.008 15.5 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.11 gi|336477028|ref|YP_004616169.1| - 0.0066 14.8 0.0 0.0094 14.3 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.15 gi|336477028|ref|YP_004616169.1| - 0.024 13.6 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Spermine_synth PF01564.12 gi|336477028|ref|YP_004616169.1| - 0.028 13.3 0.0 0.077 11.9 0.0 1.7 2 0 0 2 2 2 0 Spermine/spermidine synthase Met_10 PF02475.11 gi|336477028|ref|YP_004616169.1| - 0.075 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein DUF92 PF01940.11 gi|336477029|ref|YP_004616170.1| - 6.1e-70 234.8 18.1 6.1e-70 234.8 12.6 2.5 3 0 0 3 3 3 2 Integral membrane protein DUF92 Prok-JAB PF14464.1 gi|336477030|ref|YP_004616171.1| - 1.7e-10 40.3 0.0 2.1e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|336477030|ref|YP_004616171.1| - 0.057 13.1 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain JAB PF01398.16 gi|336477030|ref|YP_004616171.1| - 0.086 12.5 0.0 0.21 11.3 0.0 1.7 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF2099 PF09872.4 gi|336477031|ref|YP_004616172.1| - 9.1e-112 372.2 2.7 1e-111 372.0 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) AMP-binding_C_2 PF14535.1 gi|336477033|ref|YP_004616174.1| - 1.8e-27 95.1 2.0 2.7e-27 94.6 0.6 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|336477033|ref|YP_004616174.1| - 2.5e-19 68.9 0.0 5.6e-19 67.8 0.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|336477033|ref|YP_004616174.1| - 0.00046 18.9 0.1 0.0014 17.3 0.1 1.7 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|336477033|ref|YP_004616174.1| - 0.027 13.0 0.0 2.3 6.6 0.0 2.1 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ABC_tran PF00005.22 gi|336477034|ref|YP_004616175.1| - 1.5e-31 109.5 0.1 2.8e-31 108.6 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|336477034|ref|YP_004616175.1| - 1.4e-10 41.6 2.7 1.6e-08 34.8 1.9 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336477034|ref|YP_004616175.1| - 4.5e-06 26.8 1.1 3.3e-05 24.0 0.8 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336477034|ref|YP_004616175.1| - 5.5e-06 25.7 0.3 1.3e-05 24.5 0.2 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336477034|ref|YP_004616175.1| - 3.9e-05 23.7 0.1 8.5e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activ_2 PF14532.1 gi|336477034|ref|YP_004616175.1| - 0.0001 22.3 0.2 0.0018 18.3 0.0 2.6 2 1 1 3 3 3 1 Sigma-54 interaction domain ResIII PF04851.10 gi|336477034|ref|YP_004616175.1| - 0.00015 21.6 0.6 0.054 13.3 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DUF258 PF03193.11 gi|336477034|ref|YP_004616175.1| - 0.00018 20.7 0.1 0.00033 19.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 oligo_HPY PF08352.7 gi|336477034|ref|YP_004616175.1| - 0.00022 21.5 0.0 0.00048 20.4 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region IstB_IS21 PF01695.12 gi|336477034|ref|YP_004616175.1| - 0.00028 20.3 0.1 0.0016 17.8 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|336477034|ref|YP_004616175.1| - 0.00077 19.7 0.1 0.0063 16.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|336477034|ref|YP_004616175.1| - 0.00083 18.3 0.1 0.0022 16.9 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.7 gi|336477034|ref|YP_004616175.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain ATP-synt_ab PF00006.20 gi|336477034|ref|YP_004616175.1| - 0.0015 18.1 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|336477034|ref|YP_004616175.1| - 0.0019 17.6 0.1 0.0052 16.2 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA PF00004.24 gi|336477034|ref|YP_004616175.1| - 0.0043 17.2 1.0 0.015 15.5 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|336477034|ref|YP_004616175.1| - 0.0055 15.9 0.0 0.016 14.3 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|336477034|ref|YP_004616175.1| - 0.0057 16.1 0.3 0.056 12.9 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|336477034|ref|YP_004616175.1| - 0.0064 16.8 1.5 0.031 14.6 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336477034|ref|YP_004616175.1| - 0.0095 15.3 0.2 0.13 11.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|336477034|ref|YP_004616175.1| - 0.01 14.6 0.0 0.024 13.5 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Arch_ATPase PF01637.13 gi|336477034|ref|YP_004616175.1| - 0.012 15.3 0.6 0.033 13.9 0.1 2.0 2 1 0 2 2 2 0 Archaeal ATPase MobB PF03205.9 gi|336477034|ref|YP_004616175.1| - 0.012 15.3 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|336477034|ref|YP_004616175.1| - 0.015 14.7 0.1 0.043 13.2 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|336477034|ref|YP_004616175.1| - 0.022 15.5 0.0 0.047 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|336477034|ref|YP_004616175.1| - 0.026 14.6 0.0 0.15 12.2 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|336477034|ref|YP_004616175.1| - 0.027 14.2 0.1 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|336477034|ref|YP_004616175.1| - 0.036 13.1 0.9 0.41 9.7 0.0 2.3 2 0 0 2 2 2 0 KaiC Miro PF08477.8 gi|336477034|ref|YP_004616175.1| - 0.042 14.3 0.0 0.089 13.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein PhoH PF02562.11 gi|336477034|ref|YP_004616175.1| - 0.044 13.0 0.2 0.22 10.7 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.1 gi|336477034|ref|YP_004616175.1| - 0.049 13.1 0.0 0.09 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|336477034|ref|YP_004616175.1| - 0.052 13.1 0.2 0.15 11.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336477034|ref|YP_004616175.1| - 0.066 13.1 0.1 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|336477034|ref|YP_004616175.1| - 0.067 12.9 0.6 0.13 12.0 0.0 1.7 2 1 0 2 2 2 0 Domain of unknown function DUF87 PRK PF00485.13 gi|336477034|ref|YP_004616175.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family PEPCK_ATP PF01293.15 gi|336477034|ref|YP_004616175.1| - 0.076 11.5 0.3 1.6 7.2 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase ABC_ATPase PF09818.4 gi|336477034|ref|YP_004616175.1| - 0.081 11.4 1.2 0.65 8.5 0.3 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|336477034|ref|YP_004616175.1| - 0.091 12.6 0.1 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|336477034|ref|YP_004616175.1| - 0.095 12.5 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336477035|ref|YP_004616176.1| - 1.1e-22 80.8 0.0 1.6e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336477035|ref|YP_004616176.1| - 2.7e-13 50.0 0.4 5.5e-13 49.0 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336477035|ref|YP_004616176.1| - 5.8e-06 26.4 3.4 0.00091 19.2 2.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336477035|ref|YP_004616176.1| - 7.1e-05 22.8 0.4 0.0011 19.0 0.2 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336477035|ref|YP_004616176.1| - 0.00024 21.2 0.0 0.00056 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336477035|ref|YP_004616176.1| - 0.00027 20.2 0.0 0.00048 19.4 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|336477035|ref|YP_004616176.1| - 0.0038 16.4 0.0 0.026 13.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|336477035|ref|YP_004616176.1| - 0.021 13.8 0.0 0.028 13.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF258 PF03193.11 gi|336477035|ref|YP_004616176.1| - 0.031 13.4 1.4 0.034 13.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336477035|ref|YP_004616176.1| - 0.047 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|336477035|ref|YP_004616176.1| - 0.088 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|336477035|ref|YP_004616176.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|336477035|ref|YP_004616176.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|336477035|ref|YP_004616176.1| - 0.14 11.6 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_15 PF13175.1 gi|336477035|ref|YP_004616176.1| - 0.16 11.0 0.4 4 6.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|336477036|ref|YP_004616177.1| - 1.3e-26 93.2 12.4 1.3e-26 93.2 8.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|336477036|ref|YP_004616177.1| - 2e-07 30.2 0.4 2e-07 30.2 0.3 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF1072 PF06380.6 gi|336477036|ref|YP_004616177.1| - 3.5 7.3 6.5 5.8 6.6 1.9 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) BPD_transp_1 PF00528.17 gi|336477037|ref|YP_004616178.1| - 1.9e-46 157.9 8.8 1.9e-46 157.9 6.1 1.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.7 gi|336477038|ref|YP_004616179.1| - 2.1e-23 82.6 0.0 3.2e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336477038|ref|YP_004616179.1| - 4.3e-23 81.5 0.0 5.1e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336477038|ref|YP_004616179.1| - 4.7e-19 68.6 0.0 7e-19 68.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336477038|ref|YP_004616179.1| - 2.7e-15 56.1 0.0 3.6e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336477038|ref|YP_004616179.1| - 5.3e-14 52.4 0.0 8.8e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336477038|ref|YP_004616179.1| - 3.6e-13 49.8 0.0 7.1e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477038|ref|YP_004616179.1| - 5e-12 46.3 0.0 7.5e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336477038|ref|YP_004616179.1| - 4.8e-09 36.2 0.0 7e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336477038|ref|YP_004616179.1| - 1.7e-08 34.0 0.0 2.4e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|336477038|ref|YP_004616179.1| - 2.1e-07 30.3 0.0 3.3e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|336477038|ref|YP_004616179.1| - 1.9e-06 27.4 0.0 3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|336477038|ref|YP_004616179.1| - 6.5e-05 22.1 0.0 9.2e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|336477038|ref|YP_004616179.1| - 0.00012 21.1 0.0 0.00073 18.6 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|336477038|ref|YP_004616179.1| - 0.00018 21.2 0.0 0.00032 20.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|336477038|ref|YP_004616179.1| - 0.00089 18.2 0.0 0.0013 17.6 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase GidB PF02527.10 gi|336477038|ref|YP_004616179.1| - 0.0012 18.0 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.15 gi|336477038|ref|YP_004616179.1| - 0.0014 17.7 0.0 0.0022 17.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TPMT PF05724.6 gi|336477038|ref|YP_004616179.1| - 0.0022 17.4 0.0 0.0032 16.9 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.14 gi|336477038|ref|YP_004616179.1| - 0.0075 15.8 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|336477038|ref|YP_004616179.1| - 0.0087 15.4 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0146 PF03686.8 gi|336477038|ref|YP_004616179.1| - 0.032 14.0 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) 3HCDH_N PF02737.13 gi|336477038|ref|YP_004616179.1| - 0.042 13.4 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoMet_MTase PF07757.8 gi|336477038|ref|YP_004616179.1| - 0.052 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase UPF0020 PF01170.13 gi|336477038|ref|YP_004616179.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 UDPG_MGDP_dh_N PF03721.9 gi|336477038|ref|YP_004616179.1| - 0.087 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SBP_bac_5 PF00496.17 gi|336477039|ref|YP_004616180.1| - 1e-84 284.5 0.0 1.3e-84 284.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MgtE PF01769.11 gi|336477040|ref|YP_004616181.1| - 1.3e-21 77.3 10.6 1.3e-21 77.3 7.3 1.4 2 0 0 2 2 2 1 Divalent cation transporter DUF1129 PF06570.6 gi|336477040|ref|YP_004616181.1| - 1.2 8.4 4.3 2 7.6 3.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) MgtE PF01769.11 gi|336477041|ref|YP_004616182.1| - 5.5e-16 59.0 6.2 5.5e-16 59.0 4.3 1.4 2 0 0 2 2 2 1 Divalent cation transporter DUF3278 PF11683.3 gi|336477041|ref|YP_004616182.1| - 0.21 11.5 2.5 0.45 10.5 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) Yip1 PF04893.12 gi|336477041|ref|YP_004616182.1| - 2.4 7.6 16.9 5.1 6.5 11.7 1.6 1 1 0 1 1 1 0 Yip1 domain DUF2721 PF11026.3 gi|336477041|ref|YP_004616182.1| - 9.3 5.9 9.7 14 5.3 3.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) TrkA_C PF02080.16 gi|336477042|ref|YP_004616183.1| - 5.2e-30 102.8 0.0 1e-13 50.6 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|336477042|ref|YP_004616183.1| - 2.6e-13 50.2 14.9 6e-08 33.0 6.7 2.6 2 0 0 2 2 2 2 PhoU domain Latrotoxin_C PF15658.1 gi|336477042|ref|YP_004616183.1| - 0.047 13.5 0.1 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Latrotoxin C-terminal domain Rib_5-P_isom_A PF06026.9 gi|336477043|ref|YP_004616184.1| - 6.8e-59 198.0 0.1 1e-58 197.4 0.0 1.3 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|336477043|ref|YP_004616184.1| - 3.2e-09 36.6 0.8 1.4e-06 28.0 0.1 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|336477043|ref|YP_004616184.1| - 0.017 14.0 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain CoA_trans PF01144.18 gi|336477043|ref|YP_004616184.1| - 0.066 12.3 0.2 0.17 11.0 0.1 1.6 1 1 1 2 2 2 0 Coenzyme A transferase DsrD PF08679.6 gi|336477043|ref|YP_004616184.1| - 0.091 12.7 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) tRNA-synt_2 PF00152.15 gi|336477044|ref|YP_004616185.1| - 1.7e-95 319.6 0.2 2.2e-95 319.2 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|336477044|ref|YP_004616185.1| - 3.7e-14 52.3 0.5 6.7e-14 51.5 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|336477044|ref|YP_004616185.1| - 0.00024 20.3 1.3 0.014 14.6 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Asparaginase PF00710.15 gi|336477045|ref|YP_004616186.1| - 2.4e-90 302.5 0.0 3e-90 302.2 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Lyase_1 PF00206.15 gi|336477046|ref|YP_004616187.1| - 3e-64 217.1 0.0 5e-64 216.4 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|336477046|ref|YP_004616187.1| - 3.2e-12 46.3 0.2 1.9e-11 43.8 0.0 2.3 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Rubrerythrin PF02915.12 gi|336477047|ref|YP_004616188.1| - 1.6e-06 28.4 5.8 1.1e-05 25.7 4.0 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|336477047|ref|YP_004616188.1| - 0.00094 19.1 1.1 0.012 15.5 0.2 2.1 1 1 1 2 2 2 1 Ferritin-like domain Desulfoferrod_N PF06397.7 gi|336477047|ref|YP_004616188.1| - 0.0097 15.2 0.4 0.053 12.9 0.0 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain RRN7 PF11781.3 gi|336477047|ref|YP_004616188.1| - 0.021 14.2 0.8 2.7 7.5 0.0 2.9 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 HypA PF01155.14 gi|336477047|ref|YP_004616188.1| - 0.034 13.8 0.1 0.081 12.6 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYVE PF01363.16 gi|336477047|ref|YP_004616188.1| - 0.062 13.1 0.1 0.13 12.1 0.1 1.8 1 1 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.7 gi|336477047|ref|YP_004616188.1| - 0.38 10.1 3.7 1 8.7 1.6 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|336477047|ref|YP_004616188.1| - 0.57 10.1 3.3 3.7 7.5 2.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Aminotran_1_2 PF00155.16 gi|336477048|ref|YP_004616189.1| - 1.5e-63 214.9 0.0 1.7e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Chorismate_synt PF01264.16 gi|336477049|ref|YP_004616190.1| - 3.9e-153 509.0 1.5 4.4e-153 508.8 1.0 1.0 1 0 0 1 1 1 1 Chorismate synthase CbiA PF01656.18 gi|336477050|ref|YP_004616191.1| - 9.8e-28 96.8 0.0 1.3e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|336477050|ref|YP_004616191.1| - 4.3e-07 29.2 0.1 4.2e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_18 PF13238.1 gi|336477050|ref|YP_004616191.1| - 6.5e-05 23.2 0.0 0.00011 22.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|336477050|ref|YP_004616191.1| - 0.0005 19.7 0.6 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|336477050|ref|YP_004616191.1| - 0.0017 18.3 0.0 0.0081 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|336477050|ref|YP_004616191.1| - 0.002 17.3 0.2 0.14 11.3 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|336477050|ref|YP_004616191.1| - 0.0026 18.5 0.1 0.0048 17.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|336477050|ref|YP_004616191.1| - 0.0031 17.1 0.1 0.012 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|336477050|ref|YP_004616191.1| - 0.018 14.6 0.1 0.03 13.8 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|336477050|ref|YP_004616191.1| - 0.034 13.8 0.1 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 NTPase TRC8_N PF13705.1 gi|336477050|ref|YP_004616191.1| - 0.047 12.2 0.1 0.058 11.9 0.0 1.1 1 0 0 1 1 1 0 TRC8 N-terminal domain MobB PF03205.9 gi|336477050|ref|YP_004616191.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|336477050|ref|YP_004616191.1| - 0.057 12.2 0.1 0.084 11.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.17 gi|336477050|ref|YP_004616191.1| - 0.063 12.7 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|336477050|ref|YP_004616191.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|336477050|ref|YP_004616191.1| - 0.1 12.9 0.1 0.14 12.4 0.1 1.7 1 1 0 1 1 1 0 ABC transporter TctA PF01970.11 gi|336477051|ref|YP_004616192.1| - 4e-80 269.2 37.0 4.6e-80 269.0 25.6 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ATP_bind_3 PF01171.15 gi|336477052|ref|YP_004616193.1| - 1.3e-15 57.3 0.0 2.1e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|336477052|ref|YP_004616193.1| - 6.5e-09 34.7 0.0 1e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|336477052|ref|YP_004616193.1| - 4e-06 26.5 0.0 6.3e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_4 PF01902.12 gi|336477052|ref|YP_004616193.1| - 7e-06 25.5 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region NAD_synthase PF02540.12 gi|336477052|ref|YP_004616193.1| - 5.1e-05 22.2 0.1 7.2e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.14 gi|336477052|ref|YP_004616193.1| - 0.0003 20.6 0.0 0.0005 19.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|336477052|ref|YP_004616193.1| - 0.0015 17.8 0.1 0.0015 17.8 0.1 2.9 3 2 1 4 4 4 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.14 gi|336477052|ref|YP_004616193.1| - 0.013 14.6 0.0 0.019 14.0 0.0 1.3 1 1 0 1 1 1 0 Arginosuccinate synthase Stomoxyn PF11585.3 gi|336477052|ref|YP_004616193.1| - 0.078 12.7 0.3 0.19 11.5 0.2 1.6 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn H_PPase PF03030.11 gi|336477054|ref|YP_004616195.1| - 1.8e-273 908.9 55.1 2.1e-273 908.7 38.2 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase PAP_assoc PF03828.14 gi|336477055|ref|YP_004616196.1| - 0.26 11.2 1.4 7.7 6.5 0.8 2.4 2 1 0 2 2 2 0 Cid1 family poly A polymerase Pterin_bind PF00809.17 gi|336477056|ref|YP_004616197.1| - 6.4e-15 55.1 1.1 2e-13 50.2 0.8 2.3 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|336477056|ref|YP_004616197.1| - 9.6e-09 35.0 0.0 3.4e-08 33.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|336477056|ref|YP_004616197.1| - 5.6e-06 25.0 0.1 1.1e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF681 PF05080.7 gi|336477056|ref|YP_004616197.1| - 0.028 14.8 0.0 0.17 12.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF681) Pertus-S4-tox PF09275.5 gi|336477056|ref|YP_004616197.1| - 0.031 14.3 0.0 1.7 8.7 0.0 2.6 2 0 0 2 2 2 0 Pertussis toxin S4 subunit FtsZ_C PF12327.3 gi|336477057|ref|YP_004616198.1| - 2e-34 117.5 0.7 6.7e-34 115.8 0.1 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|336477057|ref|YP_004616198.1| - 4.5e-33 114.9 0.7 1.9e-32 112.8 0.5 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|336477057|ref|YP_004616198.1| - 0.013 15.3 0.2 0.076 12.8 0.0 2.2 2 1 0 2 2 2 0 ThiF family ADH_zinc_N PF00107.21 gi|336477057|ref|YP_004616198.1| - 0.057 12.9 0.0 0.17 11.4 0.0 1.9 1 0 0 1 1 1 0 Zinc-binding dehydrogenase HAD_2 PF13419.1 gi|336477058|ref|YP_004616199.1| - 9.1e-23 81.3 0.0 1.1e-22 81.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336477058|ref|YP_004616199.1| - 1.6e-08 35.2 0.0 1.6e-07 31.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336477058|ref|YP_004616199.1| - 4.2e-06 26.3 0.0 6.7e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|336477058|ref|YP_004616199.1| - 5.4e-06 26.1 0.4 0.00025 20.7 0.2 2.6 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase HAD PF12710.2 gi|336477058|ref|YP_004616199.1| - 0.0028 17.8 0.0 0.0036 17.5 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|336477058|ref|YP_004616199.1| - 0.016 14.6 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Hydrolase_6 PF13344.1 gi|336477058|ref|YP_004616199.1| - 0.026 14.4 0.2 2.9 7.8 0.1 3.2 2 2 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Beta-Casp PF10996.3 gi|336477059|ref|YP_004616200.1| - 1.6e-34 118.5 0.0 5.9e-34 116.7 0.0 2.0 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|336477059|ref|YP_004616200.1| - 2.7e-22 79.3 0.2 4.4e-22 78.6 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|336477059|ref|YP_004616200.1| - 1.2e-13 50.5 0.0 3.2e-13 49.2 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|336477059|ref|YP_004616200.1| - 3.3e-09 36.5 0.1 8e-09 35.3 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|336477059|ref|YP_004616200.1| - 1e-05 24.9 4.3 8.9e-05 21.9 0.6 3.7 2 1 1 3 3 3 1 KH domain KH_1 PF00013.24 gi|336477059|ref|YP_004616200.1| - 1.3e-05 24.7 0.9 0.00074 19.1 0.3 2.7 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|336477059|ref|YP_004616200.1| - 4.6e-05 23.1 0.0 0.00012 21.7 0.0 1.8 2 1 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|336477059|ref|YP_004616200.1| - 0.00051 19.6 0.1 0.0015 18.1 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|336477059|ref|YP_004616200.1| - 0.023 14.3 0.2 0.067 12.8 0.2 1.8 1 0 0 1 1 1 0 KH domain Peptidase_M55 PF04951.8 gi|336477059|ref|YP_004616200.1| - 0.15 11.2 0.0 0.37 9.9 0.0 1.6 1 0 0 1 1 1 0 D-aminopeptidase Proteasome PF00227.21 gi|336477060|ref|YP_004616201.1| - 6.4e-56 188.6 0.9 7.3e-56 188.4 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4191 PF13829.1 gi|336477060|ref|YP_004616201.1| - 0.018 14.1 0.1 0.027 13.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) HD PF01966.17 gi|336477061|ref|YP_004616202.1| - 3.7e-14 52.7 0.4 8.5e-14 51.6 0.1 1.6 2 0 0 2 2 2 1 HD domain CPSase_L_D3 PF02787.14 gi|336477061|ref|YP_004616202.1| - 0.11 12.2 0.0 0.81 9.4 0.0 2.0 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TFIIE_alpha PF02002.12 gi|336477062|ref|YP_004616203.1| - 8.5e-19 67.0 1.2 8.5e-19 67.0 0.8 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|336477062|ref|YP_004616203.1| - 0.092 12.0 4.3 0.34 10.2 3.0 2.1 1 0 0 1 1 1 0 TFIIB zinc-binding ATP-grasp_3 PF02655.9 gi|336477063|ref|YP_004616204.1| - 7.2e-36 123.4 0.0 1e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336477063|ref|YP_004616204.1| - 1.3e-13 51.0 0.0 1.8e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336477063|ref|YP_004616204.1| - 1.5e-08 33.7 0.0 7.7e-08 31.4 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|336477063|ref|YP_004616204.1| - 1.5e-07 30.9 0.0 5.7e-07 29.0 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|336477063|ref|YP_004616204.1| - 0.00064 18.8 0.1 0.014 14.5 0.0 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.8 gi|336477063|ref|YP_004616204.1| - 0.0011 18.4 0.0 0.013 14.9 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|336477063|ref|YP_004616204.1| - 0.0039 16.7 0.0 0.016 14.7 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain NMD3 PF04981.8 gi|336477064|ref|YP_004616205.1| - 1e-61 208.1 0.8 1.2e-61 207.8 0.6 1.1 1 0 0 1 1 1 1 NMD3 family zf-TFIIB PF13453.1 gi|336477064|ref|YP_004616205.1| - 0.0022 17.1 1.3 0.006 15.7 0.9 1.8 1 1 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|336477064|ref|YP_004616205.1| - 0.28 10.4 3.9 2.4 7.4 0.9 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336477064|ref|YP_004616205.1| - 0.46 10.3 6.2 0.43 10.4 2.3 2.4 2 1 0 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|336477064|ref|YP_004616205.1| - 2 8.1 7.2 4 7.2 1.2 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 NinF PF05810.7 gi|336477064|ref|YP_004616205.1| - 2.8 7.8 7.0 0.96 9.3 1.6 2.2 1 1 1 2 2 2 0 NinF protein UPF0547 PF10571.4 gi|336477064|ref|YP_004616205.1| - 3.4 7.4 9.8 26 4.6 4.6 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|336477064|ref|YP_004616205.1| - 5.2 6.6 11.2 1.3 8.5 1.9 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DUF362 PF04015.7 gi|336477065|ref|YP_004616206.1| - 1.5e-23 83.3 0.0 5.8e-23 81.4 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_6 PF12837.2 gi|336477065|ref|YP_004616206.1| - 0.00037 20.2 2.1 0.00037 20.2 1.4 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|336477065|ref|YP_004616206.1| - 0.00065 19.2 2.2 0.00065 19.2 1.5 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336477065|ref|YP_004616206.1| - 0.00091 19.5 14.0 0.0025 18.1 9.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477065|ref|YP_004616206.1| - 0.038 13.9 3.5 0.038 13.9 2.5 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336477065|ref|YP_004616206.1| - 0.41 10.9 14.4 0.46 10.7 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477065|ref|YP_004616206.1| - 0.57 10.0 19.9 0.086 12.6 10.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477065|ref|YP_004616206.1| - 3.4 8.4 17.9 7.4 7.4 4.1 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain CdhD PF03599.11 gi|336477066|ref|YP_004616207.1| - 1.7e-150 500.8 0.2 2e-150 500.6 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|336477066|ref|YP_004616207.1| - 7.2e-15 54.2 1.1 1.2e-14 53.5 0.7 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster CdhD PF03599.11 gi|336477067|ref|YP_004616208.1| - 1.1e-87 294.0 2.2 5.6e-81 271.9 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit GDPD PF03009.12 gi|336477067|ref|YP_004616208.1| - 0.0068 15.9 0.1 0.01 15.3 0.1 1.2 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family B12-binding PF02310.14 gi|336477067|ref|YP_004616208.1| - 0.016 15.0 0.2 0.035 13.9 0.1 1.5 1 0 0 1 1 1 0 B12 binding domain CbiA PF01656.18 gi|336477068|ref|YP_004616209.1| - 2.4e-35 121.7 0.3 3.2e-35 121.3 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|336477068|ref|YP_004616209.1| - 2.9e-09 36.4 0.1 5.6e-09 35.5 0.1 1.4 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|336477068|ref|YP_004616209.1| - 2.3e-08 33.4 0.5 1.4e-07 30.8 0.1 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|336477068|ref|YP_004616209.1| - 1.2e-07 31.7 0.1 1.9e-06 27.9 0.0 2.6 1 1 1 2 2 2 1 AAA domain YhjQ PF06564.7 gi|336477068|ref|YP_004616209.1| - 0.00013 21.4 0.0 0.00088 18.6 0.0 2.1 1 1 0 1 1 1 1 YhjQ protein NTPase_1 PF03266.10 gi|336477068|ref|YP_004616209.1| - 0.00046 19.9 1.7 0.31 10.7 0.1 2.2 2 0 0 2 2 2 2 NTPase Toprim PF01751.17 gi|336477068|ref|YP_004616209.1| - 0.0011 18.9 0.3 0.17 11.8 0.1 2.5 2 1 0 2 2 2 1 Toprim domain MobB PF03205.9 gi|336477068|ref|YP_004616209.1| - 0.0012 18.5 0.0 0.0026 17.4 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Toprim_4 PF13662.1 gi|336477068|ref|YP_004616209.1| - 0.0013 18.7 0.3 0.0058 16.6 0.0 2.1 2 0 0 2 2 2 1 Toprim domain AAA_16 PF13191.1 gi|336477068|ref|YP_004616209.1| - 0.0014 18.6 0.0 0.0031 17.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|336477068|ref|YP_004616209.1| - 0.0017 17.8 1.7 0.88 8.9 0.3 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|336477068|ref|YP_004616209.1| - 0.0097 15.0 0.3 1.1 8.3 0.0 2.4 2 0 0 2 2 2 1 ATPase MipZ PIF1 PF05970.9 gi|336477068|ref|YP_004616209.1| - 0.012 14.5 0.1 0.019 13.9 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.1 gi|336477068|ref|YP_004616209.1| - 0.019 14.5 0.0 0.03 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336477068|ref|YP_004616209.1| - 0.022 14.5 0.6 0.057 13.1 0.2 1.9 2 0 0 2 2 2 0 Part of AAA domain T2SE PF00437.15 gi|336477068|ref|YP_004616209.1| - 0.028 13.3 0.5 0.048 12.5 0.3 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|336477068|ref|YP_004616209.1| - 0.036 14.3 0.0 0.078 13.2 0.0 1.6 1 1 0 1 1 1 0 ABC transporter DUF2075 PF09848.4 gi|336477068|ref|YP_004616209.1| - 0.043 12.7 0.1 0.051 12.5 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) VWA_2 PF13519.1 gi|336477068|ref|YP_004616209.1| - 0.044 13.8 0.0 0.062 13.4 0.0 1.4 1 1 0 1 1 1 0 von Willebrand factor type A domain AAA_17 PF13207.1 gi|336477068|ref|YP_004616209.1| - 0.044 14.5 3.5 0.61 10.9 2.4 2.4 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|336477068|ref|YP_004616209.1| - 0.057 13.0 4.4 1.3 8.5 0.3 2.5 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|336477068|ref|YP_004616209.1| - 0.061 12.9 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.1 gi|336477068|ref|YP_004616209.1| - 0.062 13.4 0.1 0.34 11.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain CoA_binding_3 PF13727.1 gi|336477068|ref|YP_004616209.1| - 0.079 12.7 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 CoA-binding domain AAA_14 PF13173.1 gi|336477068|ref|YP_004616209.1| - 0.095 12.6 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain Toprim_2 PF13155.1 gi|336477068|ref|YP_004616209.1| - 0.1 12.9 0.1 7.2 7.0 0.0 2.3 2 0 0 2 2 2 0 Toprim-like KAP_NTPase PF07693.9 gi|336477068|ref|YP_004616209.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_18 PF13238.1 gi|336477068|ref|YP_004616209.1| - 0.12 12.6 0.9 0.28 11.4 0.4 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|336477068|ref|YP_004616209.1| - 0.28 10.9 1.9 0.53 10.0 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|336477068|ref|YP_004616209.1| - 0.65 9.3 3.3 3.4 7.0 0.5 2.8 1 1 1 3 3 3 0 AAA domain CdhC PF03598.10 gi|336477069|ref|YP_004616210.1| - 2.1e-179 596.3 0.0 2.7e-179 595.9 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit SMP PF04927.7 gi|336477069|ref|YP_004616210.1| - 0.14 12.1 0.1 0.31 11.0 0.1 1.5 1 0 0 1 1 1 0 Seed maturation protein CO_dh PF02552.11 gi|336477070|ref|YP_004616211.1| - 1.3e-32 112.6 0.0 1.5e-32 112.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|336477070|ref|YP_004616211.1| - 7.7e-05 22.4 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain LRR_4 PF12799.2 gi|336477070|ref|YP_004616211.1| - 0.0042 16.6 0.2 0.011 15.3 0.0 1.7 1 1 0 1 1 1 1 Leucine Rich repeats (2 copies) Prismane PF03063.15 gi|336477071|ref|YP_004616212.1| - 4.1e-107 358.6 0.7 2.5e-88 296.6 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_10 PF13237.1 gi|336477071|ref|YP_004616212.1| - 1.1e-10 41.1 18.1 1.6e-07 31.0 7.5 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477071|ref|YP_004616212.1| - 1.5e-10 41.1 7.4 1.5e-10 41.1 5.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477071|ref|YP_004616212.1| - 6.6e-10 38.8 6.4 6.6e-10 38.8 4.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477071|ref|YP_004616212.1| - 8.4e-09 35.6 7.5 8.4e-09 35.6 5.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336477071|ref|YP_004616212.1| - 3.6e-08 33.6 18.2 1.2e-07 31.9 5.8 2.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336477071|ref|YP_004616212.1| - 1.2e-06 27.8 25.8 2.2e-05 23.8 2.7 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477071|ref|YP_004616212.1| - 2.5e-05 24.0 21.5 6.9e-05 22.6 8.2 3.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477071|ref|YP_004616212.1| - 4e-05 23.2 10.7 0.00075 19.2 1.0 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336477071|ref|YP_004616212.1| - 4.5e-05 23.7 3.9 0.0029 17.9 0.4 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477071|ref|YP_004616212.1| - 5e-05 23.9 6.7 0.13 12.9 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|336477071|ref|YP_004616212.1| - 0.00028 20.9 27.3 0.0033 17.6 1.4 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336477071|ref|YP_004616212.1| - 0.00066 20.1 3.8 0.1 13.2 0.1 3.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|336477071|ref|YP_004616212.1| - 0.00075 19.2 3.2 0.00075 19.2 2.2 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|336477071|ref|YP_004616212.1| - 0.018 14.6 0.9 0.018 14.6 0.6 2.9 2 1 1 3 3 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|336477071|ref|YP_004616212.1| - 0.097 13.0 10.4 0.75 10.2 0.9 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336477071|ref|YP_004616212.1| - 7.6 7.3 33.5 0.12 12.9 3.1 3.6 3 0 0 3 3 2 0 4Fe-4S binding domain Rhomboid PF01694.17 gi|336477072|ref|YP_004616213.1| - 8.6e-34 116.6 15.9 8.6e-34 116.6 11.0 1.7 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|336477072|ref|YP_004616213.1| - 3e-13 49.3 6.0 4.4e-13 48.8 4.2 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|336477072|ref|YP_004616213.1| - 1.8e-06 28.2 0.4 1.8e-06 28.2 0.3 2.1 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) MFS_Mycoplasma PF07672.8 gi|336477072|ref|YP_004616213.1| - 0.0014 17.8 4.4 0.0026 16.9 3.0 1.4 1 0 0 1 1 1 1 Mycoplasma MFS transporter zf-HIT PF04438.11 gi|336477072|ref|YP_004616213.1| - 0.014 15.0 6.5 0.024 14.2 4.5 1.3 1 0 0 1 1 1 0 HIT zinc finger PolC_DP2 PF03833.8 gi|336477072|ref|YP_004616213.1| - 0.033 11.8 0.7 0.041 11.5 0.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 FYVE PF01363.16 gi|336477072|ref|YP_004616213.1| - 0.039 13.8 1.8 0.06 13.2 1.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-H2C2_2 PF13465.1 gi|336477072|ref|YP_004616213.1| - 3.8 7.9 7.8 3.5 8.1 2.4 2.3 1 1 1 2 2 2 0 Zinc-finger double domain IBR PF01485.16 gi|336477072|ref|YP_004616213.1| - 8.7 6.3 9.1 41 4.1 6.3 1.9 1 1 0 1 1 1 0 IBR domain NYN PF01936.13 gi|336477074|ref|YP_004616215.1| - 7.3e-25 87.9 0.0 1e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 NYN domain HMGL-like PF00682.14 gi|336477075|ref|YP_004616216.1| - 1.5e-71 240.8 2.2 2.1e-71 240.3 1.5 1.2 1 0 0 1 1 1 1 HMGL-like ERCC4 PF02732.10 gi|336477075|ref|YP_004616216.1| - 0.074 12.8 0.2 0.25 11.0 0.0 2.0 3 0 0 3 3 3 0 ERCC4 domain AIRC PF00731.15 gi|336477076|ref|YP_004616217.1| - 1.4e-21 76.3 5.6 1.4e-21 76.3 3.9 1.6 2 0 0 2 2 2 1 AIR carboxylase Tubulin_C PF03953.12 gi|336477076|ref|YP_004616217.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Tubulin C-terminal domain DUF2719 PF10891.3 gi|336477076|ref|YP_004616217.1| - 0.16 11.7 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2719) NAD_kinase PF01513.16 gi|336477077|ref|YP_004616218.1| - 1.9e-57 194.2 0.1 2.3e-57 193.9 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase Inositol_P PF00459.20 gi|336477078|ref|YP_004616219.1| - 2.2e-35 122.2 0.1 2.7e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|336477078|ref|YP_004616219.1| - 6.8e-07 28.4 0.1 5.2e-06 25.5 0.0 2.0 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase Gp_dh_C PF02800.15 gi|336477079|ref|YP_004616220.1| - 6.1e-25 87.5 0.0 8.9e-25 86.9 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|336477079|ref|YP_004616220.1| - 3.1e-21 75.8 0.3 1.4e-20 73.8 0.2 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|336477079|ref|YP_004616220.1| - 1.7e-11 44.0 0.6 3.9e-11 42.9 0.3 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|336477079|ref|YP_004616220.1| - 0.0014 19.0 0.0 0.0059 16.9 0.0 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|336477079|ref|YP_004616220.1| - 0.0021 18.3 0.0 0.0048 17.1 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336477079|ref|YP_004616220.1| - 0.0041 16.2 0.2 0.028 13.5 0.1 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336477079|ref|YP_004616220.1| - 0.0055 17.2 0.1 0.014 15.9 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|336477079|ref|YP_004616220.1| - 0.033 13.1 0.1 0.052 12.5 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase RNA_bind_2 PF10133.4 gi|336477080|ref|YP_004616221.1| - 4.7e-22 77.7 2.9 5.5e-22 77.5 2.0 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DUF89 PF01937.14 gi|336477081|ref|YP_004616222.1| - 6.1e-57 193.0 0.1 7.9e-57 192.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 HipA_C PF07804.7 gi|336477081|ref|YP_004616222.1| - 0.14 12.2 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 HipA-like C-terminal domain Phosphodiest PF01663.17 gi|336477082|ref|YP_004616223.1| - 6e-12 45.5 0.2 9.1e-11 41.6 0.2 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|336477082|ref|YP_004616223.1| - 1.4e-11 44.2 0.0 3.9e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|336477082|ref|YP_004616223.1| - 1.1e-07 31.3 0.0 1.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.15 gi|336477082|ref|YP_004616223.1| - 0.013 14.2 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 Alkaline phosphatase DS PF01916.12 gi|336477083|ref|YP_004616224.1| - 1.9e-26 92.8 0.1 7e-15 54.9 0.0 2.1 2 0 0 2 2 2 2 Deoxyhypusine synthase SWIRM PF04433.12 gi|336477083|ref|YP_004616224.1| - 0.057 13.5 0.1 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 SWIRM domain Leptin PF02024.10 gi|336477083|ref|YP_004616224.1| - 0.14 11.8 0.1 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Leptin CAP PF00188.21 gi|336477084|ref|YP_004616225.1| - 6.6e-15 55.7 2.7 1.4e-14 54.6 0.1 2.2 1 1 1 2 2 2 1 Cysteine-rich secretory protein family EF-hand_1 PF00036.27 gi|336477084|ref|YP_004616225.1| - 0.087 12.1 0.5 0.28 10.5 0.1 2.1 2 0 0 2 2 2 0 EF hand DUF2072 PF09845.4 gi|336477084|ref|YP_004616225.1| - 0.11 12.3 0.3 0.19 11.6 0.2 1.5 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Phage_Coat_B PF05356.6 gi|336477085|ref|YP_004616226.1| - 0.016 14.9 0.2 0.016 14.9 0.1 1.1 1 0 0 1 1 1 0 Phage Coat protein B SIMPL PF04402.9 gi|336477086|ref|YP_004616227.1| - 5.7e-49 166.8 5.7 6.8e-49 166.5 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) YbaB_DNA_bd PF02575.11 gi|336477086|ref|YP_004616227.1| - 0.025 14.4 1.0 0.078 12.8 0.4 2.0 1 1 0 1 1 1 0 YbaB/EbfC DNA-binding family MacB_PCD PF12704.2 gi|336477086|ref|YP_004616227.1| - 0.072 12.6 3.2 0.12 11.9 2.2 1.4 1 1 0 1 1 1 0 MacB-like periplasmic core domain HisKA_2 PF07568.7 gi|336477087|ref|YP_004616228.1| - 1e-26 92.5 3.9 2.6e-26 91.2 2.7 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|336477087|ref|YP_004616228.1| - 5.6e-12 45.9 0.0 1.5e-09 38.1 0.0 3.1 4 0 0 4 4 4 1 PAS domain HATPase_c PF02518.21 gi|336477087|ref|YP_004616228.1| - 1e-10 41.3 0.0 2.4e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|336477087|ref|YP_004616228.1| - 4.6e-06 26.9 0.2 1e-05 25.8 0.1 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_8 PF13188.1 gi|336477087|ref|YP_004616228.1| - 5.4e-05 22.8 0.0 0.00026 20.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|336477087|ref|YP_004616228.1| - 8.8e-05 22.2 0.0 0.00019 21.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|336477087|ref|YP_004616228.1| - 0.00024 21.1 0.0 0.00066 19.6 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|336477087|ref|YP_004616228.1| - 0.00079 19.1 0.0 0.016 14.9 0.0 2.7 2 1 1 3 3 3 1 PAS fold GAF_3 PF13492.1 gi|336477087|ref|YP_004616228.1| - 0.023 14.7 0.0 0.15 12.1 0.0 2.4 2 1 0 2 2 2 0 GAF domain HisKA_2 PF07568.7 gi|336477088|ref|YP_004616229.1| - 3.8e-29 100.3 1.9 3.9e-29 100.3 0.4 1.8 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|336477088|ref|YP_004616229.1| - 9.6e-16 57.6 0.2 8.8e-15 54.5 0.1 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|336477088|ref|YP_004616229.1| - 2.4e-10 40.1 0.1 4.6e-10 39.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336477088|ref|YP_004616229.1| - 9.5e-09 35.5 0.3 0.0041 17.4 0.0 3.0 2 1 0 2 2 2 2 PAS domain HWE_HK PF07536.9 gi|336477088|ref|YP_004616229.1| - 1.4e-06 28.6 0.1 2.4e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 HWE histidine kinase PAS PF00989.19 gi|336477088|ref|YP_004616229.1| - 2.1e-05 24.2 0.1 0.0013 18.5 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|336477088|ref|YP_004616229.1| - 0.0001 22.2 0.0 0.82 9.7 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|336477088|ref|YP_004616229.1| - 0.00066 19.6 0.0 0.13 12.2 0.0 3.0 2 1 1 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|336477088|ref|YP_004616229.1| - 0.00097 18.9 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336477088|ref|YP_004616229.1| - 0.0044 16.6 0.1 0.013 15.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3713 PF12506.3 gi|336477088|ref|YP_004616229.1| - 0.15 12.1 3.0 0.18 11.8 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3713) Met_10 PF02475.11 gi|336477089|ref|YP_004616230.1| - 3.3e-64 216.1 0.0 4.5e-64 215.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|336477089|ref|YP_004616230.1| - 1.2e-11 44.3 0.0 1.9e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|336477089|ref|YP_004616230.1| - 9.1e-11 41.5 0.0 1.6e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477089|ref|YP_004616230.1| - 7.5e-09 36.1 0.0 1.4e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336477089|ref|YP_004616230.1| - 3.7e-08 33.3 0.0 6.8e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336477089|ref|YP_004616230.1| - 1.3e-07 31.0 0.0 2.7e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|336477089|ref|YP_004616230.1| - 4.4e-07 29.4 0.1 1.4e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|336477089|ref|YP_004616230.1| - 4.3e-06 25.9 0.0 6.9e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|336477089|ref|YP_004616230.1| - 2e-05 23.7 0.0 3.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase TRM PF02005.11 gi|336477089|ref|YP_004616230.1| - 2.1e-05 23.6 0.0 2.8e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|336477089|ref|YP_004616230.1| - 0.00014 21.4 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PRMT5 PF05185.11 gi|336477089|ref|YP_004616230.1| - 0.0004 19.4 0.0 0.00059 18.8 0.0 1.2 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Methyltransf_24 PF13578.1 gi|336477089|ref|YP_004616230.1| - 0.0012 19.6 0.0 0.0027 18.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|336477089|ref|YP_004616230.1| - 0.04 13.4 0.0 0.09 12.3 0.0 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_12 PF08242.7 gi|336477089|ref|YP_004616230.1| - 0.043 14.2 0.0 0.083 13.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.10 gi|336477089|ref|YP_004616230.1| - 0.051 12.7 0.0 0.08 12.0 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PCMT PF01135.14 gi|336477089|ref|YP_004616230.1| - 0.089 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.13 gi|336477089|ref|YP_004616230.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 DNA methylase RNA_bind_2 PF10133.4 gi|336477089|ref|YP_004616230.1| - 0.13 12.2 0.7 0.66 10.0 0.0 2.6 3 0 0 3 3 3 0 Predicted RNA-binding protein LysE PF01810.13 gi|336477090|ref|YP_004616231.1| - 8.2e-24 83.9 17.1 9.4e-24 83.7 11.8 1.0 1 0 0 1 1 1 1 LysE type translocator TFIIB PF00382.14 gi|336477091|ref|YP_004616232.1| - 1.3e-46 156.2 1.8 2.6e-24 84.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336477091|ref|YP_004616232.1| - 3.2e-18 64.7 1.8 6.1e-18 63.8 0.8 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|336477091|ref|YP_004616232.1| - 6.4e-05 22.1 0.3 0.041 13.1 0.0 3.1 2 0 0 2 2 2 2 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|336477091|ref|YP_004616232.1| - 0.00032 20.2 0.3 0.00086 18.9 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|336477091|ref|YP_004616232.1| - 0.0073 15.4 0.5 0.0073 15.4 0.3 1.8 2 0 0 2 2 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|336477091|ref|YP_004616232.1| - 0.019 15.2 1.3 0.13 12.6 0.5 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_AsnC-type PF13404.1 gi|336477091|ref|YP_004616232.1| - 0.023 14.2 0.5 0.091 12.3 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RPA_interact_C PF14768.1 gi|336477091|ref|YP_004616232.1| - 0.028 14.8 0.2 2.6 8.5 0.0 2.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Cyclin_N PF00134.18 gi|336477091|ref|YP_004616232.1| - 0.044 13.3 0.0 5.2 6.6 0.0 2.3 1 1 1 2 2 2 0 Cyclin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|336477091|ref|YP_004616232.1| - 0.051 13.0 0.5 0.14 11.6 0.3 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|336477091|ref|YP_004616232.1| - 0.14 11.8 1.4 0.28 10.8 0.3 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|336477091|ref|YP_004616232.1| - 0.32 10.8 3.1 0.63 9.9 0.7 2.3 2 1 0 2 2 2 0 Double zinc ribbon HTH_31 PF13560.1 gi|336477091|ref|YP_004616232.1| - 0.45 10.7 3.5 4.1 7.6 0.0 3.2 2 1 1 3 3 3 0 Helix-turn-helix domain zf-Mss51 PF13824.1 gi|336477091|ref|YP_004616232.1| - 0.51 10.2 2.4 2.4 8.0 0.4 2.9 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|336477091|ref|YP_004616232.1| - 3.4 7.6 8.2 0.37 10.7 0.5 2.8 2 1 1 3 3 3 0 Zinc ribbon domain Gar1 PF04410.9 gi|336477092|ref|YP_004616233.1| - 6.1e-13 48.4 0.3 6.6e-13 48.3 0.2 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region NIR_SIR_ferr PF03460.12 gi|336477092|ref|YP_004616233.1| - 0.097 12.3 0.1 0.19 11.3 0.0 1.6 1 1 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain PEP-utilizers_C PF02896.13 gi|336477093|ref|YP_004616234.1| - 5e-97 324.3 0.0 1.2e-96 323.0 0.0 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|336477093|ref|YP_004616234.1| - 5e-67 226.2 0.0 1.1e-66 225.1 0.0 1.5 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|336477093|ref|YP_004616234.1| - 6e-24 83.4 0.7 1.3e-23 82.3 0.5 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Laminin_II PF06009.7 gi|336477093|ref|YP_004616234.1| - 0.002 17.8 2.7 0.21 11.3 0.0 3.4 3 0 0 3 3 3 1 Laminin Domain II Phage_connect_1 PF05135.8 gi|336477093|ref|YP_004616234.1| - 0.024 14.7 0.2 0.089 12.9 0.1 2.0 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein RNA_pol_Rpb1_4 PF05000.12 gi|336477093|ref|YP_004616234.1| - 0.034 13.8 0.9 0.089 12.5 0.0 2.1 3 0 0 3 3 3 0 RNA polymerase Rpb1, domain 4 PEP-utilisers_N PF05524.8 gi|336477093|ref|YP_004616234.1| - 0.045 13.5 0.3 0.57 9.9 0.0 2.8 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal H-kinase_dim PF02895.9 gi|336477093|ref|YP_004616234.1| - 0.054 13.8 0.4 0.62 10.4 0.0 3.0 3 1 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain ACT PF01842.20 gi|336477094|ref|YP_004616235.1| - 5.3e-19 67.3 1.1 4.6e-11 41.9 0.1 2.1 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|336477094|ref|YP_004616235.1| - 9.7e-09 34.6 0.1 0.00024 20.5 0.1 2.4 2 1 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|336477094|ref|YP_004616235.1| - 2.2e-07 31.0 0.2 0.0063 16.8 0.0 2.3 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|336477094|ref|YP_004616235.1| - 0.075 12.7 0.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 ACT domain AMP-binding_C_2 PF14535.1 gi|336477095|ref|YP_004616236.1| - 7.2e-32 109.3 0.4 1.8e-31 108.0 0.2 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|336477095|ref|YP_004616236.1| - 3.5e-18 65.1 0.0 1.7e-17 62.9 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.7 gi|336477095|ref|YP_004616236.1| - 8.8e-09 34.5 0.0 0.0001 21.1 0.0 2.6 2 1 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|336477095|ref|YP_004616236.1| - 0.011 14.3 0.0 0.72 8.2 0.0 2.2 2 0 0 2 2 2 0 GH3 auxin-responsive promoter Ribosomal_S13 PF00416.17 gi|336477095|ref|YP_004616236.1| - 0.14 12.5 0.6 4 7.9 0.1 2.7 3 0 0 3 3 3 0 Ribosomal protein S13/S18 DHH PF01368.15 gi|336477096|ref|YP_004616237.1| - 2.5e-10 40.1 0.3 9.2e-10 38.3 0.2 1.9 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|336477096|ref|YP_004616237.1| - 4.9e-09 35.7 0.7 1e-08 34.7 0.5 1.5 1 0 0 1 1 1 1 DHHA1 domain Prefoldin_2 PF01920.15 gi|336477097|ref|YP_004616238.1| - 1.6e-21 76.0 18.5 1.8e-21 75.8 12.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit THOC7 PF05615.8 gi|336477097|ref|YP_004616238.1| - 0.0051 17.0 12.7 0.036 14.3 8.8 1.9 1 1 0 1 1 1 1 Tho complex subunit 7 DUF87 PF01935.12 gi|336477097|ref|YP_004616238.1| - 0.043 13.6 4.6 0.048 13.4 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF948 PF06103.6 gi|336477097|ref|YP_004616238.1| - 0.045 13.6 9.3 0.08 12.8 0.6 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1040 PF06288.8 gi|336477097|ref|YP_004616238.1| - 0.058 13.6 3.4 0.2 11.9 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1040) Phasin PF05597.6 gi|336477097|ref|YP_004616238.1| - 0.061 13.0 7.9 0.046 13.4 3.8 1.8 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Gp58 PF07902.6 gi|336477097|ref|YP_004616238.1| - 0.073 11.2 5.7 0.094 10.9 4.0 1.2 1 0 0 1 1 1 0 gp58-like protein Binary_toxB PF03495.9 gi|336477097|ref|YP_004616238.1| - 0.17 10.4 3.0 0.19 10.2 2.0 1.0 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA ubiquitin PF00240.18 gi|336477097|ref|YP_004616238.1| - 0.2 11.0 0.2 0.2 11.0 0.1 2.0 2 0 0 2 2 1 0 Ubiquitin family Tropomyosin_1 PF12718.2 gi|336477097|ref|YP_004616238.1| - 0.23 11.2 12.8 1.3 8.8 1.9 2.2 2 0 0 2 2 2 0 Tropomyosin like YlqD PF11068.3 gi|336477097|ref|YP_004616238.1| - 0.34 10.9 17.7 0.24 11.4 2.5 2.1 2 0 0 2 2 2 0 YlqD protein DUF4239 PF14023.1 gi|336477097|ref|YP_004616238.1| - 0.55 9.5 3.4 0.59 9.4 2.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) AKNA PF12443.3 gi|336477097|ref|YP_004616238.1| - 0.8 9.7 11.1 1.5 8.8 7.4 1.7 1 1 0 1 1 1 0 AT-hook-containing transcription factor Snf7 PF03357.16 gi|336477097|ref|YP_004616238.1| - 0.81 9.0 16.8 0.95 8.8 3.7 2.3 2 0 0 2 2 2 0 Snf7 SRP54 PF00448.17 gi|336477097|ref|YP_004616238.1| - 0.88 8.9 4.3 1 8.7 3.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Med10 PF09748.4 gi|336477097|ref|YP_004616238.1| - 1.2 8.9 8.7 37 4.1 6.0 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex UN_NPL4 PF11543.3 gi|336477097|ref|YP_004616238.1| - 1.2 9.4 5.7 0.67 10.2 0.5 2.4 2 1 0 2 2 2 0 Nuclear pore localisation protein NPL4 TPR_MLP1_2 PF07926.7 gi|336477097|ref|YP_004616238.1| - 1.3 8.7 17.3 3.5 7.3 1.7 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF342 PF03961.8 gi|336477097|ref|YP_004616238.1| - 1.4 7.2 11.3 1.7 6.9 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Viral_P18 PF04521.8 gi|336477097|ref|YP_004616238.1| - 1.4 8.3 10.5 1.2 8.6 1.7 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Spc7 PF08317.6 gi|336477097|ref|YP_004616238.1| - 1.5 7.4 15.1 1.8 7.1 10.5 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein COG2 PF06148.6 gi|336477097|ref|YP_004616238.1| - 1.8 8.4 6.6 2.2 8.1 0.5 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CDC37_N PF03234.9 gi|336477097|ref|YP_004616238.1| - 2.6 8.3 13.2 3.8 7.8 9.1 1.3 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Laminin_II PF06009.7 gi|336477097|ref|YP_004616238.1| - 2.9 7.6 14.8 37 4.0 10.2 2.0 1 1 0 1 1 1 0 Laminin Domain II Mnd1 PF03962.10 gi|336477097|ref|YP_004616238.1| - 3 7.4 15.3 3.5 7.2 1.4 2.1 1 1 1 2 2 2 0 Mnd1 family FlxA PF14282.1 gi|336477097|ref|YP_004616238.1| - 3.4 7.6 27.3 4.9 7.1 6.9 2.3 2 0 0 2 2 2 0 FlxA-like protein DUF4404 PF14357.1 gi|336477097|ref|YP_004616238.1| - 3.9 7.9 11.6 3.2 8.2 2.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Filament PF00038.16 gi|336477097|ref|YP_004616238.1| - 4.5 6.6 18.7 0.33 10.3 3.5 2.0 1 1 1 2 2 2 0 Intermediate filament protein V_ATPase_I PF01496.14 gi|336477097|ref|YP_004616238.1| - 4.8 4.9 13.4 35 2.0 9.4 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family HisKA_3 PF07730.8 gi|336477097|ref|YP_004616238.1| - 4.8 7.6 7.4 6.3 7.2 0.4 2.8 2 1 1 3 3 3 0 Histidine kinase FlaC_arch PF05377.6 gi|336477097|ref|YP_004616238.1| - 5.2 7.0 11.7 0.77 9.7 1.4 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) BAG PF02179.11 gi|336477097|ref|YP_004616238.1| - 5.7 7.1 9.3 19 5.4 4.6 2.3 1 1 1 2 2 2 0 BAG domain Nup54 PF13874.1 gi|336477097|ref|YP_004616238.1| - 5.8 6.5 14.3 1.3e+02 2.1 9.9 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Atg14 PF10186.4 gi|336477097|ref|YP_004616238.1| - 8.2 5.2 15.6 14 4.4 10.8 1.4 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2408 PF10303.4 gi|336477097|ref|YP_004616238.1| - 9 6.4 12.0 1.6 8.8 2.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Tup_N PF08581.5 gi|336477097|ref|YP_004616238.1| - 9.5 6.5 15.3 8.6 6.6 4.7 2.8 1 1 2 3 3 3 0 Tup N-terminal Pcc1 PF09341.5 gi|336477098|ref|YP_004616239.1| - 7.1e-13 48.4 0.2 7.9e-13 48.2 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|336477099|ref|YP_004616240.1| - 8.9e-10 38.5 0.1 1.2e-09 38.1 0.1 1.1 1 0 0 1 1 1 1 Brix domain DNA_RNApol_7kD PF03604.8 gi|336477100|ref|YP_004616241.1| - 1.3e-08 34.1 8.4 1.9e-08 33.5 5.8 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|336477100|ref|YP_004616241.1| - 7e-05 22.1 7.4 0.0024 17.2 1.2 1.7 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336477100|ref|YP_004616241.1| - 0.00034 19.8 1.4 0.00043 19.5 0.9 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|336477100|ref|YP_004616241.1| - 0.00047 19.2 0.4 0.048 12.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DUF951 PF06107.6 gi|336477100|ref|YP_004616241.1| - 0.0011 18.4 3.2 0.088 12.3 0.2 2.0 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF951) HypA PF01155.14 gi|336477100|ref|YP_004616241.1| - 0.0023 17.5 0.3 0.0023 17.5 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Cys_rich_CPXG PF14255.1 gi|336477100|ref|YP_004616241.1| - 0.0027 17.4 1.3 0.016 15.0 0.1 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG OrfB_Zn_ribbon PF07282.6 gi|336477100|ref|YP_004616241.1| - 0.0029 17.2 2.1 0.0054 16.3 1.5 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zf-ISL3 PF14690.1 gi|336477100|ref|YP_004616241.1| - 0.0043 17.0 3.6 0.013 15.5 0.5 2.0 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_3 PF14369.1 gi|336477100|ref|YP_004616241.1| - 0.013 15.5 1.0 0.017 15.0 0.7 1.3 1 0 0 1 1 1 0 zinc-finger CpXC PF14353.1 gi|336477100|ref|YP_004616241.1| - 0.019 14.9 1.9 0.8 9.6 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|336477100|ref|YP_004616241.1| - 0.02 14.7 3.9 0.24 11.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336477100|ref|YP_004616241.1| - 0.034 13.7 3.6 0.68 9.5 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336477100|ref|YP_004616241.1| - 0.038 13.7 3.7 0.87 9.3 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|336477100|ref|YP_004616241.1| - 0.04 13.6 1.3 1.2 8.9 0.0 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|336477100|ref|YP_004616241.1| - 0.047 13.5 0.8 0.093 12.5 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|336477100|ref|YP_004616241.1| - 0.048 13.3 2.1 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF329 PF03884.9 gi|336477100|ref|YP_004616241.1| - 0.054 13.0 1.5 3 7.4 1.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) DUF2072 PF09845.4 gi|336477100|ref|YP_004616241.1| - 0.054 13.4 0.7 0.052 13.4 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-C2H2_4 PF13894.1 gi|336477100|ref|YP_004616241.1| - 0.07 13.4 0.9 2.4 8.6 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger IBR PF01485.16 gi|336477100|ref|YP_004616241.1| - 0.079 12.8 1.1 0.1 12.5 0.8 1.2 1 0 0 1 1 1 0 IBR domain zinc_ribbon_6 PF14599.1 gi|336477100|ref|YP_004616241.1| - 0.098 12.4 1.1 0.13 12.0 0.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon C1_1 PF00130.17 gi|336477100|ref|YP_004616241.1| - 0.12 12.0 1.3 0.37 10.5 1.0 1.7 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Di19 PF05605.7 gi|336477100|ref|YP_004616241.1| - 0.14 12.2 0.4 0.52 10.4 0.0 1.8 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding A2L_zn_ribbon PF08792.5 gi|336477100|ref|YP_004616241.1| - 0.15 11.5 1.2 5 6.7 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-FCS PF06467.9 gi|336477100|ref|YP_004616241.1| - 0.19 11.4 1.4 0.68 9.6 0.1 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-AN1 PF01428.11 gi|336477100|ref|YP_004616241.1| - 0.2 11.5 2.1 1.3 8.9 1.5 1.9 1 1 1 2 2 2 0 AN1-like Zinc finger Sgf11 PF08209.6 gi|336477100|ref|YP_004616241.1| - 0.22 10.8 1.7 8.7 5.7 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF2197 PF09963.4 gi|336477100|ref|YP_004616241.1| - 0.22 11.5 1.2 5.9 6.9 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Ribosomal_S27e PF01667.12 gi|336477100|ref|YP_004616241.1| - 0.22 11.0 0.9 1 8.9 0.0 1.8 1 1 0 1 1 1 0 Ribosomal protein S27 DUF2752 PF10825.3 gi|336477100|ref|YP_004616241.1| - 0.23 11.5 0.1 0.23 11.5 0.1 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF2752) zf-TFIIB PF13453.1 gi|336477100|ref|YP_004616241.1| - 0.28 10.3 1.9 0.59 9.3 1.4 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger DiS_P_DiS PF06750.8 gi|336477100|ref|YP_004616241.1| - 0.49 10.2 2.5 13 5.7 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Cys_rich_KTR PF14205.1 gi|336477100|ref|YP_004616241.1| - 0.53 9.7 4.2 0.61 9.5 0.3 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR zf-C2H2 PF00096.21 gi|336477100|ref|YP_004616241.1| - 0.61 10.5 3.3 9.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-FPG_IleRS PF06827.9 gi|336477100|ref|YP_004616241.1| - 0.89 9.2 7.1 1.5 8.5 0.2 2.4 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|336477100|ref|YP_004616241.1| - 1.1 9.2 6.7 7.2 6.6 4.7 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|336477100|ref|YP_004616241.1| - 1.4 8.3 3.7 4.9 6.6 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Mu-like_Com PF10122.4 gi|336477100|ref|YP_004616241.1| - 2 7.5 7.1 37 3.4 1.4 2.2 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-C2HC_2 PF13913.1 gi|336477100|ref|YP_004616241.1| - 2.7 7.7 5.5 10 5.9 0.9 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UPF0547 PF10571.4 gi|336477100|ref|YP_004616241.1| - 6.5 6.5 7.6 0.62 9.8 1.5 2.0 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.14 gi|336477101|ref|YP_004616242.1| - 7.2e-31 105.9 6.9 8.1e-31 105.7 4.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family C1_1 PF00130.17 gi|336477101|ref|YP_004616242.1| - 0.024 14.3 1.7 0.035 13.8 1.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4379 PF14311.1 gi|336477101|ref|YP_004616242.1| - 0.032 14.0 1.2 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Zn_Tnp_IS1595 PF12760.2 gi|336477101|ref|YP_004616242.1| - 0.033 13.9 3.7 0.053 13.3 2.6 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-UBP PF02148.14 gi|336477101|ref|YP_004616242.1| - 0.052 13.6 0.3 0.081 13.0 0.2 1.4 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein OrfB_Zn_ribbon PF07282.6 gi|336477101|ref|YP_004616242.1| - 0.25 10.9 2.7 0.63 9.7 1.8 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF951 PF06107.6 gi|336477101|ref|YP_004616242.1| - 0.27 10.7 2.1 0.52 9.8 1.4 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) TFIIS_C PF01096.13 gi|336477101|ref|YP_004616242.1| - 0.29 10.7 3.5 2 8.1 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|336477101|ref|YP_004616242.1| - 0.67 9.9 3.0 13 5.8 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|336477101|ref|YP_004616242.1| - 1 9.8 3.2 6.9 7.2 0.2 2.7 3 0 0 3 3 3 0 C2H2-type zinc finger Prim_Zn_Ribbon PF08273.7 gi|336477101|ref|YP_004616242.1| - 5 7.2 8.4 23 5.1 4.9 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase RNase_PH PF01138.16 gi|336477102|ref|YP_004616243.1| - 2.6e-28 98.9 0.0 4.8e-28 98.0 0.0 1.4 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|336477102|ref|YP_004616243.1| - 2.5e-11 43.3 0.9 2.5e-11 43.3 0.6 1.7 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|336477103|ref|YP_004616244.1| - 4.9e-32 111.0 0.0 7.6e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|336477103|ref|YP_004616244.1| - 5e-18 64.8 0.5 1.1e-17 63.6 0.4 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|336477104|ref|YP_004616245.1| - 2.5e-12 46.2 0.4 6.6e-12 44.8 0.3 1.8 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|336477104|ref|YP_004616245.1| - 2.6e-10 39.4 0.0 5.4e-10 38.3 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_3 PF13014.1 gi|336477104|ref|YP_004616245.1| - 3.5e-05 23.3 0.1 0.00011 21.7 0.1 1.9 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|336477104|ref|YP_004616245.1| - 0.00012 21.5 1.1 0.00022 20.6 0.3 1.8 2 0 0 2 2 2 1 KH domain S1 PF00575.18 gi|336477104|ref|YP_004616245.1| - 0.00016 21.7 0.1 0.0008 19.4 0.0 2.1 2 0 0 2 2 2 1 S1 RNA binding domain UAE_UbL PF14732.1 gi|336477104|ref|YP_004616245.1| - 0.031 14.3 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain SBDS PF01172.13 gi|336477105|ref|YP_004616246.1| - 8.3e-27 92.8 0.6 1.4e-26 92.1 0.4 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|336477105|ref|YP_004616246.1| - 3.4e-25 88.1 0.2 4.9e-25 87.6 0.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|336477106|ref|YP_004616247.1| - 8e-61 204.6 0.3 8e-61 204.6 0.2 1.6 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|336477106|ref|YP_004616247.1| - 7.9e-15 53.8 0.4 3.3e-14 51.8 0.1 2.2 3 0 0 3 3 3 1 Proteasome subunit A N-terminal signature FKBP_N PF01346.13 gi|336477106|ref|YP_004616247.1| - 0.05 13.6 3.6 0.095 12.7 2.5 1.4 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RNase_P_Rpp14 PF01900.14 gi|336477107|ref|YP_004616248.1| - 2.3e-19 69.2 0.2 2.7e-19 69.0 0.2 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family DDDD PF10161.4 gi|336477107|ref|YP_004616248.1| - 0.11 12.1 0.1 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative mitochondrial precursor protein RNase_P_p30 PF01876.11 gi|336477108|ref|YP_004616249.1| - 5.7e-36 123.0 0.0 8.1e-36 122.5 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|336477108|ref|YP_004616249.1| - 1.3e-05 25.0 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain RNA_binding PF01877.12 gi|336477109|ref|YP_004616250.1| - 4.2e-31 107.4 0.4 5e-31 107.1 0.3 1.1 1 0 0 1 1 1 1 RNA binding FPL PF09758.4 gi|336477109|ref|YP_004616250.1| - 0.067 12.9 0.2 0.13 12.0 0.1 1.7 1 1 0 1 1 1 0 Uncharacterised conserved protein Rep_trans PF02486.14 gi|336477109|ref|YP_004616250.1| - 0.093 12.2 0.4 3.1 7.2 0.1 2.1 2 0 0 2 2 2 0 Replication initiation factor Ribosomal_L15e PF00827.12 gi|336477110|ref|YP_004616251.1| - 4.1e-85 284.1 10.0 4.9e-85 283.8 7.0 1.0 1 0 0 1 1 1 1 Ribosomal L15 OpcA_G6PD_assem PF10128.4 gi|336477110|ref|YP_004616251.1| - 0.29 10.0 1.3 0.45 9.3 0.9 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase subunit Vpu PF00558.14 gi|336477111|ref|YP_004616252.1| - 0.14 11.6 2.1 0.15 11.5 1.4 1.1 1 0 0 1 1 1 0 Vpu protein ThiS PF02597.15 gi|336477112|ref|YP_004616253.1| - 4.1e-05 23.9 0.1 4.6e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.1 gi|336477112|ref|YP_004616253.1| - 0.035 13.9 0.9 0.049 13.4 0.6 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin DUF457 PF04307.9 gi|336477113|ref|YP_004616254.1| - 9.5e-25 86.7 7.5 1.4e-24 86.2 5.2 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PsbK PF02533.10 gi|336477113|ref|YP_004616254.1| - 0.041 13.8 3.4 0.12 12.3 2.3 1.8 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component DUF3307 PF11750.3 gi|336477113|ref|YP_004616254.1| - 0.092 12.4 4.8 0.097 12.4 2.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3307) GAF_2 PF13185.1 gi|336477114|ref|YP_004616255.1| - 3.1e-24 86.1 0.0 5e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|336477114|ref|YP_004616255.1| - 3.1e-20 71.9 0.0 7.2e-20 70.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336477114|ref|YP_004616255.1| - 3.4e-09 37.0 0.1 8.2e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|336477114|ref|YP_004616255.1| - 2.1e-06 27.6 0.2 8.5e-06 25.6 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|336477114|ref|YP_004616255.1| - 3.3e-06 26.7 0.0 1.5e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|336477114|ref|YP_004616255.1| - 5.8e-05 23.1 0.0 9.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|336477114|ref|YP_004616255.1| - 9.9e-05 22.0 0.0 0.00025 20.7 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|336477114|ref|YP_004616255.1| - 0.00035 20.3 0.0 0.001 18.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|336477114|ref|YP_004616255.1| - 0.002 18.1 0.0 0.011 15.7 0.0 2.1 1 1 0 1 1 1 1 PAS fold GAF PF01590.21 gi|336477114|ref|YP_004616255.1| - 0.046 13.8 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 GAF domain T2SE PF00437.15 gi|336477115|ref|YP_004616256.1| - 1.7e-33 115.6 0.0 1.1e-32 113.0 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|336477115|ref|YP_004616256.1| - 0.0011 18.9 0.0 0.0079 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Miro PF08477.8 gi|336477115|ref|YP_004616256.1| - 0.0049 17.3 0.1 0.028 14.8 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein Septin PF00735.13 gi|336477115|ref|YP_004616256.1| - 0.0068 15.4 0.8 1.1 8.2 0.0 3.0 3 0 0 3 3 3 1 Septin Zeta_toxin PF06414.7 gi|336477115|ref|YP_004616256.1| - 0.007 15.4 0.3 0.024 13.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_22 PF13401.1 gi|336477115|ref|YP_004616256.1| - 0.015 15.3 0.0 0.25 11.4 0.0 2.8 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|336477115|ref|YP_004616256.1| - 0.031 13.7 0.0 0.074 12.4 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|336477115|ref|YP_004616256.1| - 0.045 14.0 0.1 0.11 12.7 0.1 1.8 1 0 0 1 1 1 0 ABC transporter UPF0079 PF02367.12 gi|336477115|ref|YP_004616256.1| - 0.085 12.4 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|336477115|ref|YP_004616256.1| - 0.12 11.7 0.0 0.27 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336477115|ref|YP_004616256.1| - 2.8 8.2 10.9 3.3 7.9 0.0 3.4 3 0 0 3 3 3 0 AAA domain Wzy_C PF04932.10 gi|336477116|ref|YP_004616257.1| - 0.0071 16.1 1.6 0.0071 16.1 1.1 3.1 3 1 0 3 3 3 1 O-Antigen ligase E2F_TDP PF02319.15 gi|336477116|ref|YP_004616257.1| - 0.13 11.8 0.1 0.34 10.5 0.0 1.7 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Radical_SAM PF04055.16 gi|336477117|ref|YP_004616258.1| - 6.8e-08 32.8 0.1 2.5e-07 31.0 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336477117|ref|YP_004616258.1| - 1.1e-06 28.6 0.3 2.6e-06 27.4 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336477117|ref|YP_004616258.1| - 4e-05 23.7 0.2 9.9e-05 22.4 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2551 PF10826.3 gi|336477118|ref|YP_004616259.1| - 9.4e-35 118.3 0.6 1.1e-34 118.1 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|336477118|ref|YP_004616259.1| - 0.0012 18.7 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.11 gi|336477118|ref|YP_004616259.1| - 0.0036 17.3 0.0 0.0042 17.1 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor Prenyltransf PF01255.14 gi|336477119|ref|YP_004616260.1| - 7.7e-74 247.5 0.2 1e-73 247.1 0.2 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase HDNR PF15115.1 gi|336477119|ref|YP_004616260.1| - 0.041 13.8 0.1 0.092 12.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function with conserved HDNR motif Aldo_ket_red PF00248.16 gi|336477121|ref|YP_004616262.1| - 1e-42 145.9 0.0 1.4e-42 145.4 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|336477121|ref|YP_004616262.1| - 9.2e-13 48.3 7.1 2.4e-12 46.9 4.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477121|ref|YP_004616262.1| - 9.1e-10 38.6 7.3 2e-09 37.5 5.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336477121|ref|YP_004616262.1| - 5.5e-09 36.3 3.5 1.2e-05 25.6 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477121|ref|YP_004616262.1| - 1.3e-08 34.7 6.3 2.8e-08 33.6 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336477121|ref|YP_004616262.1| - 6.1e-05 22.7 5.2 0.0089 15.8 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477121|ref|YP_004616262.1| - 7.1e-05 23.1 6.9 0.00017 21.8 4.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336477121|ref|YP_004616262.1| - 0.0001 21.7 2.1 0.0001 21.7 1.4 2.8 2 1 0 2 2 1 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336477121|ref|YP_004616262.1| - 0.0007 19.3 12.1 0.0053 16.5 8.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477121|ref|YP_004616262.1| - 0.0043 16.8 2.6 0.0043 16.8 1.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336477121|ref|YP_004616262.1| - 0.013 15.7 4.7 0.013 15.7 3.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|336477121|ref|YP_004616262.1| - 0.015 14.8 6.0 0.24 11.0 1.3 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|336477121|ref|YP_004616262.1| - 0.029 15.1 8.0 0.15 12.8 5.8 2.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|336477121|ref|YP_004616262.1| - 0.059 13.9 0.6 0.059 13.9 0.4 2.3 2 0 0 2 2 1 0 4Fe-4S single cluster domain HTH_24 PF13412.1 gi|336477122|ref|YP_004616263.1| - 3.9e-07 29.3 0.1 4.6e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|336477122|ref|YP_004616263.1| - 3.9e-05 23.6 0.0 4.6e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|336477122|ref|YP_004616263.1| - 0.00025 20.6 0.0 0.00027 20.5 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336477122|ref|YP_004616263.1| - 0.00036 20.1 0.0 0.00048 19.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|336477122|ref|YP_004616263.1| - 0.00072 19.0 0.0 0.00077 18.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|336477122|ref|YP_004616263.1| - 0.00075 19.2 0.0 0.001 18.8 0.0 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|336477122|ref|YP_004616263.1| - 0.0008 19.0 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|336477122|ref|YP_004616263.1| - 0.00096 18.7 0.0 0.0011 18.4 0.0 1.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain TBPIP PF07106.8 gi|336477122|ref|YP_004616263.1| - 0.0018 17.8 0.2 0.0021 17.6 0.1 1.0 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_27 PF13463.1 gi|336477122|ref|YP_004616263.1| - 0.0029 17.9 0.0 0.0031 17.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336477122|ref|YP_004616263.1| - 0.004 16.7 0.0 0.0045 16.5 0.0 1.0 1 0 0 1 1 1 1 HTH domain HTH_3 PF01381.17 gi|336477122|ref|YP_004616263.1| - 0.0067 16.2 0.0 0.0074 16.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix z-alpha PF02295.12 gi|336477122|ref|YP_004616263.1| - 0.0068 16.1 0.1 0.0079 15.9 0.1 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain HTH_36 PF13730.1 gi|336477122|ref|YP_004616263.1| - 0.0079 16.3 0.5 0.011 15.8 0.1 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain Phage_pRha PF09669.5 gi|336477122|ref|YP_004616263.1| - 0.009 16.3 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) Retro_M PF02813.9 gi|336477122|ref|YP_004616263.1| - 0.0097 16.0 0.1 0.011 15.8 0.0 1.3 1 1 0 1 1 1 1 Retroviral M domain DUF3783 PF12646.2 gi|336477122|ref|YP_004616263.1| - 0.011 15.4 0.1 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) HTH_19 PF12844.2 gi|336477122|ref|YP_004616263.1| - 0.022 14.7 0.1 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|336477122|ref|YP_004616263.1| - 0.023 14.8 0.2 0.028 14.6 0.1 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain FaeA PF04703.7 gi|336477122|ref|YP_004616263.1| - 0.04 14.0 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein Sulfolobus_pRN PF05584.6 gi|336477122|ref|YP_004616263.1| - 0.064 13.2 0.0 0.068 13.1 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Mrr_N PF14338.1 gi|336477122|ref|YP_004616263.1| - 0.072 13.1 0.0 6.6 6.8 0.0 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain DUF99 PF01949.11 gi|336477122|ref|YP_004616263.1| - 0.085 11.9 0.0 0.085 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF99 GntR PF00392.16 gi|336477122|ref|YP_004616263.1| - 0.095 12.1 0.0 0.11 11.9 0.0 1.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Phage_rep_O PF04492.8 gi|336477122|ref|YP_004616263.1| - 0.095 12.9 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage replication protein O DUF2250 PF10007.4 gi|336477122|ref|YP_004616263.1| - 0.096 12.6 0.1 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.7 gi|336477122|ref|YP_004616263.1| - 0.1 12.4 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|336477122|ref|YP_004616263.1| - 0.1 12.5 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain BCCT PF02028.12 gi|336477123|ref|YP_004616264.1| - 7.6e-191 634.5 48.7 8.7e-191 634.3 33.8 1.0 1 0 0 1 1 1 1 BCCT family transporter PemK PF02452.12 gi|336477124|ref|YP_004616265.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.6 1 1 0 1 1 1 0 PemK-like protein DUF1027 PF06265.6 gi|336477125|ref|YP_004616266.1| - 0.052 13.4 1.0 0.27 11.1 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1027) Imp-YgjV PF10688.4 gi|336477126|ref|YP_004616267.1| - 0.0038 16.6 2.3 0.0056 16.1 1.6 1.2 1 0 0 1 1 1 1 Bacterial inner membrane protein MtN3_slv PF03083.11 gi|336477126|ref|YP_004616267.1| - 0.016 15.0 3.2 0.022 14.6 1.5 1.7 1 1 0 1 1 1 0 Sugar efflux transporter for intercellular exchange Med31 PF05669.7 gi|336477126|ref|YP_004616267.1| - 0.21 11.3 3.3 0.5 10.1 2.3 1.6 1 0 0 1 1 1 0 SOH1 Acetyltransf_9 PF13527.1 gi|336477127|ref|YP_004616268.1| - 7.2e-11 42.0 0.0 1e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336477127|ref|YP_004616268.1| - 3.8e-08 33.2 0.0 7.7e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336477127|ref|YP_004616268.1| - 0.0001 22.3 0.0 0.00017 21.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336477127|ref|YP_004616268.1| - 0.0073 16.4 0.0 0.014 15.4 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336477127|ref|YP_004616268.1| - 0.067 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein RNA_pol_A_bac PF01000.21 gi|336477128|ref|YP_004616269.1| - 9.7e-27 93.3 0.0 3.9e-26 91.4 0.0 1.9 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|336477128|ref|YP_004616269.1| - 1.5e-11 43.2 0.0 1.8e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.1 gi|336477128|ref|YP_004616269.1| - 9.6e-08 31.7 15.1 1.2e-06 28.2 7.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477128|ref|YP_004616269.1| - 6e-07 29.6 17.3 2.1e-06 27.8 7.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477128|ref|YP_004616269.1| - 6.2e-07 29.3 9.8 0.0054 16.7 4.0 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336477128|ref|YP_004616269.1| - 7.2e-06 25.3 13.1 0.00029 20.2 2.6 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336477128|ref|YP_004616269.1| - 4.6e-05 23.7 18.8 9e-05 22.7 8.6 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477128|ref|YP_004616269.1| - 0.00024 21.7 19.2 0.013 16.2 1.8 3.5 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|336477128|ref|YP_004616269.1| - 0.0022 17.8 22.4 0.0059 16.4 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336477128|ref|YP_004616269.1| - 0.006 16.4 23.0 0.14 12.1 1.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336477128|ref|YP_004616269.1| - 0.07 13.4 21.7 0.29 11.5 1.2 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336477128|ref|YP_004616269.1| - 0.11 12.9 16.1 3.6 8.0 5.6 3.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336477128|ref|YP_004616269.1| - 0.21 11.9 21.4 0.29 11.5 2.8 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336477128|ref|YP_004616269.1| - 4.3 8.1 29.0 0.14 12.7 2.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S11 PF00411.14 gi|336477129|ref|YP_004616270.1| - 2.6e-42 143.4 0.7 3.1e-42 143.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|336477129|ref|YP_004616270.1| - 0.029 13.8 0.2 0.038 13.4 0.1 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|336477130|ref|YP_004616271.1| - 6.8e-13 47.8 0.0 1.4e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S13 PF00416.17 gi|336477131|ref|YP_004616272.1| - 1.6e-31 108.9 0.3 1.9e-31 108.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|336477131|ref|YP_004616272.1| - 0.0019 16.8 0.0 0.002 16.7 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) IMS_HHH PF11798.3 gi|336477131|ref|YP_004616272.1| - 0.11 12.5 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif NnrU PF07298.6 gi|336477132|ref|YP_004616273.1| - 2.9e-08 33.3 8.0 5.3e-08 32.4 5.6 1.4 1 1 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|336477132|ref|YP_004616273.1| - 0.001 19.1 0.7 0.001 19.1 0.5 2.4 1 1 1 2 2 2 1 Phospholipid methyltransferase DUF3754 PF12576.3 gi|336477132|ref|YP_004616273.1| - 0.21 11.2 0.0 0.21 11.2 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) PPC PF04151.10 gi|336477133|ref|YP_004616274.1| - 0.1 13.6 0.0 0.43 11.5 0.0 2.1 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Baculo_11_kDa PF06143.6 gi|336477133|ref|YP_004616274.1| - 1.5 8.2 7.7 16 4.9 1.1 3.3 3 0 0 3 3 3 0 Baculovirus 11 kDa family TruB_N PF01509.13 gi|336477134|ref|YP_004616275.1| - 1.8e-24 86.5 0.7 1.2e-20 74.1 0.5 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|336477134|ref|YP_004616275.1| - 6.8e-17 60.9 1.3 1.8e-16 59.6 0.3 2.1 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.7 gi|336477134|ref|YP_004616275.1| - 8.6e-15 54.4 0.7 1.6e-14 53.5 0.5 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.1 gi|336477135|ref|YP_004616276.1| - 3.1e-20 72.8 0.8 3.5e-19 69.3 0.5 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|336477135|ref|YP_004616276.1| - 3.8e-13 49.8 0.0 8.7e-13 48.6 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336477135|ref|YP_004616276.1| - 2.7e-11 44.3 0.1 5.7e-11 43.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|336477135|ref|YP_004616276.1| - 1.1e-05 24.8 0.3 1.5e-05 24.4 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase ADK PF00406.17 gi|336477135|ref|YP_004616276.1| - 6.5e-05 22.8 0.0 0.00073 19.4 0.0 2.1 1 1 0 1 1 1 1 Adenylate kinase SKI PF01202.17 gi|336477135|ref|YP_004616276.1| - 0.00034 20.5 0.1 0.00074 19.4 0.1 1.6 1 1 0 1 1 1 1 Shikimate kinase CoaE PF01121.15 gi|336477135|ref|YP_004616276.1| - 0.0016 17.8 0.1 1.4 8.2 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase AAA_33 PF13671.1 gi|336477135|ref|YP_004616276.1| - 0.0023 17.7 0.0 0.053 13.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336477135|ref|YP_004616276.1| - 0.0047 16.9 0.0 0.0068 16.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain DUF276 PF03434.8 gi|336477135|ref|YP_004616276.1| - 0.013 14.4 0.6 0.021 13.8 0.4 1.3 1 0 0 1 1 1 0 DUF276 AAA_19 PF13245.1 gi|336477135|ref|YP_004616276.1| - 0.037 13.7 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF106 PF01956.11 gi|336477136|ref|YP_004616277.1| - 1.1e-39 135.7 4.6 1.3e-39 135.4 3.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|336477136|ref|YP_004616277.1| - 0.024 14.2 10.7 0.051 13.2 7.4 1.6 1 1 0 1 1 1 0 60Kd inner membrane protein CEP76-C2 PF15627.1 gi|336477136|ref|YP_004616277.1| - 0.081 12.4 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 CEP76 C2 domain ADK PF00406.17 gi|336477137|ref|YP_004616278.1| - 1.1e-59 200.6 0.0 1.3e-59 200.3 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|336477137|ref|YP_004616278.1| - 2.6e-18 65.3 2.4 6e-18 64.2 1.7 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|336477137|ref|YP_004616278.1| - 3.5e-11 43.9 0.1 6.2e-11 43.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336477137|ref|YP_004616278.1| - 8e-07 29.4 0.3 2.2e-06 27.9 0.1 1.9 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|336477137|ref|YP_004616278.1| - 5.1e-06 26.4 0.0 9.3e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|336477137|ref|YP_004616278.1| - 0.0082 15.4 1.2 0.014 14.6 0.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|336477137|ref|YP_004616278.1| - 0.0089 15.7 2.4 0.49 10.1 0.2 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|336477137|ref|YP_004616278.1| - 0.042 13.3 0.9 1.4 8.4 0.0 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|336477137|ref|YP_004616278.1| - 0.063 13.1 0.3 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Mg_chelatase PF01078.16 gi|336477137|ref|YP_004616278.1| - 0.1 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Thymidylate_kin PF02223.12 gi|336477137|ref|YP_004616278.1| - 0.11 11.8 0.1 7.8 5.8 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase AAA PF00004.24 gi|336477137|ref|YP_004616278.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GATA PF00320.22 gi|336477137|ref|YP_004616278.1| - 0.15 11.4 1.6 0.16 11.3 0.1 1.7 2 0 0 2 2 2 0 GATA zinc finger GFA PF04828.9 gi|336477137|ref|YP_004616278.1| - 0.16 11.8 0.2 1.4 8.8 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme SecY PF00344.15 gi|336477138|ref|YP_004616279.1| - 4.3e-95 318.5 25.0 5.1e-95 318.3 17.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|336477138|ref|YP_004616279.1| - 6.7e-09 35.1 0.1 2e-08 33.5 0.1 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|336477139|ref|YP_004616280.1| - 8e-31 107.0 1.9 9.4e-31 106.8 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|336477140|ref|YP_004616281.1| - 1.7e-20 72.2 0.2 3.6e-20 71.3 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|336477141|ref|YP_004616282.1| - 9.4e-28 95.7 0.9 2e-27 94.6 0.6 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|336477141|ref|YP_004616282.1| - 1.1e-23 82.2 0.4 1.8e-23 81.6 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|336477142|ref|YP_004616283.1| - 7.9e-32 109.9 0.6 9.6e-32 109.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|336477143|ref|YP_004616284.1| - 2.5e-57 192.8 11.7 2.9e-57 192.6 8.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e CdhD PF03599.11 gi|336477143|ref|YP_004616284.1| - 0.015 13.8 0.0 0.019 13.4 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF4019 PF13211.1 gi|336477143|ref|YP_004616284.1| - 0.04 14.1 0.3 0.068 13.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4019) DUF573 PF04504.9 gi|336477143|ref|YP_004616284.1| - 1 9.7 4.0 0.66 10.2 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF573 Ribosomal_L32e PF01655.13 gi|336477144|ref|YP_004616285.1| - 1.2e-37 128.2 0.2 1.5e-37 127.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|336477145|ref|YP_004616286.1| - 3.2e-29 101.2 3.6 5.7e-15 55.5 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Pilin_PilX PF11530.3 gi|336477145|ref|YP_004616286.1| - 0.087 12.4 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Minor type IV pilin, PilX FTR_C PF02741.10 gi|336477145|ref|YP_004616286.1| - 0.12 12.1 2.8 3.6 7.3 0.3 2.8 2 1 1 3 3 3 0 FTR, proximal lobe Ribosomal_S8 PF00410.14 gi|336477146|ref|YP_004616287.1| - 5.9e-27 94.0 0.0 7.5e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|336477147|ref|YP_004616288.1| - 1.6e-17 62.6 3.2 1.7e-17 62.5 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-UBR PF02207.15 gi|336477147|ref|YP_004616288.1| - 0.0034 17.0 1.3 0.0039 16.8 0.9 1.1 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) Ribosomal_L37ae PF01780.14 gi|336477147|ref|YP_004616288.1| - 0.06 13.2 1.4 0.066 13.0 1.0 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2318 PF10080.4 gi|336477147|ref|YP_004616288.1| - 0.073 12.8 1.4 0.074 12.8 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HypA PF01155.14 gi|336477147|ref|YP_004616288.1| - 0.18 11.5 1.6 0.19 11.4 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2HC_2 PF13913.1 gi|336477147|ref|YP_004616288.1| - 0.27 10.9 6.8 1.1 9.0 0.6 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type RNA_POL_M_15KD PF02150.11 gi|336477147|ref|YP_004616288.1| - 0.3 10.8 0.1 0.3 10.8 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rsm1 PF08600.5 gi|336477147|ref|YP_004616288.1| - 1 9.2 7.3 2.8 7.8 0.2 2.1 1 1 1 2 2 2 0 Rsm1-like Ribosomal_L5_C PF00673.16 gi|336477148|ref|YP_004616289.1| - 4.7e-27 93.5 0.0 7e-27 93.0 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|336477148|ref|YP_004616289.1| - 5.5e-17 61.2 0.1 3e-16 58.9 0.0 2.0 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|336477149|ref|YP_004616290.1| - 3.2e-23 81.1 0.6 5.5e-23 80.4 0.4 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|336477149|ref|YP_004616290.1| - 1.6e-11 43.8 6.4 2.5e-11 43.2 4.4 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|336477149|ref|YP_004616290.1| - 2.8e-05 23.4 0.4 0.00012 21.4 0.0 2.2 2 1 0 2 2 2 1 S4 domain KOW PF00467.24 gi|336477149|ref|YP_004616290.1| - 0.00089 18.8 1.1 0.0023 17.6 0.0 2.3 2 0 0 2 2 2 1 KOW motif S4_2 PF13275.1 gi|336477149|ref|YP_004616290.1| - 0.01 15.3 0.0 0.046 13.3 0.0 2.1 2 0 0 2 2 2 0 S4 domain DUF3994 PF13159.1 gi|336477149|ref|YP_004616290.1| - 0.066 13.4 0.1 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3994) DUF4575 PF15143.1 gi|336477149|ref|YP_004616290.1| - 0.075 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4575) KOW PF00467.24 gi|336477150|ref|YP_004616291.1| - 0.0019 17.8 0.3 0.004 16.8 0.2 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|336477151|ref|YP_004616292.1| - 2.3e-36 124.2 0.6 2.6e-36 124.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|336477152|ref|YP_004616293.1| - 1.2e-28 98.9 2.8 1.5e-28 98.6 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.4 gi|336477152|ref|YP_004616293.1| - 0.014 14.8 0.4 0.024 14.1 0.3 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain Corona_M PF01635.13 gi|336477152|ref|YP_004616293.1| - 0.069 12.1 0.0 0.071 12.0 0.0 1.1 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein UPF0086 PF01868.11 gi|336477153|ref|YP_004616294.1| - 4.3e-32 109.5 0.2 4.9e-32 109.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 DBP10CT PF08147.7 gi|336477153|ref|YP_004616294.1| - 0.098 12.4 0.3 0.27 11.0 0.0 1.7 1 1 0 2 2 2 0 DBP10CT (NUC160) domain Ribosomal_L29 PF00831.18 gi|336477154|ref|YP_004616295.1| - 3.8e-15 55.3 0.1 4.3e-15 55.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.15 gi|336477155|ref|YP_004616296.1| - 3.1e-15 56.1 0.1 6e-15 55.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|336477155|ref|YP_004616296.1| - 2.1e-13 49.6 0.0 4.7e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|336477155|ref|YP_004616296.1| - 0.0092 15.6 0.2 0.03 13.9 0.2 1.9 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|336477155|ref|YP_004616296.1| - 0.036 13.6 0.1 0.13 11.8 0.0 1.9 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.14 gi|336477156|ref|YP_004616297.1| - 2.9e-33 113.9 0.5 3.4e-33 113.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|336477157|ref|YP_004616298.1| - 1.4e-25 88.7 1.6 2.2e-25 88.0 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|336477158|ref|YP_004616299.1| - 7.1e-43 145.5 1.2 1.2e-42 144.7 0.7 1.4 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|336477158|ref|YP_004616299.1| - 1.3e-16 60.2 0.0 3.5e-16 58.9 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|336477159|ref|YP_004616300.1| - 2.5e-15 56.1 1.1 8.6e-15 54.4 0.8 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 Asp_protease_2 PF13650.1 gi|336477159|ref|YP_004616300.1| - 0.00096 19.6 0.1 0.0012 19.3 0.1 1.1 1 0 0 1 1 1 1 Aspartyl protease DUF1655 PF07868.6 gi|336477159|ref|YP_004616300.1| - 0.017 15.0 0.7 0.036 14.0 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1655) DUF3633 PF12315.3 gi|336477159|ref|YP_004616300.1| - 0.02 14.2 0.0 0.021 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3633) DUF3087 PF11286.3 gi|336477159|ref|YP_004616300.1| - 0.11 11.7 0.0 0.14 11.3 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) Ribosomal_L4 PF00573.17 gi|336477160|ref|YP_004616301.1| - 4.5e-48 163.1 0.1 5.3e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|336477161|ref|YP_004616302.1| - 6.5e-73 245.3 0.0 7.6e-73 245.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 POR PF01558.13 gi|336477162|ref|YP_004616303.1| - 1.8e-36 125.6 0.0 2.2e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase GDYXXLXY PF14345.1 gi|336477162|ref|YP_004616303.1| - 0.15 11.9 0.0 0.18 11.6 0.0 1.4 1 1 0 1 1 1 0 GDYXXLXY protein TPP_enzyme_C PF02775.16 gi|336477163|ref|YP_004616304.1| - 2e-23 82.6 0.1 4.5e-23 81.5 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|336477163|ref|YP_004616304.1| - 2.4e-12 46.8 0.1 4.5e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|336477163|ref|YP_004616304.1| - 9.8e-08 31.2 9.9 0.00025 20.5 1.0 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336477163|ref|YP_004616304.1| - 1.5e-06 27.8 10.8 0.0061 16.4 1.9 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336477163|ref|YP_004616304.1| - 7.1e-06 26.1 11.2 2.3e-05 24.5 7.8 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477163|ref|YP_004616304.1| - 2.9e-05 24.3 10.7 2.9e-05 24.3 7.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477163|ref|YP_004616304.1| - 3.8e-05 23.3 11.0 0.0001 21.9 7.6 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336477163|ref|YP_004616304.1| - 0.00018 21.2 9.5 0.00018 21.2 6.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336477163|ref|YP_004616304.1| - 0.0008 19.5 11.7 0.25 11.7 1.2 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|336477163|ref|YP_004616304.1| - 0.0012 18.3 0.1 0.016 14.6 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|336477163|ref|YP_004616304.1| - 0.033 13.1 0.1 1.1 8.1 0.0 2.1 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.1 gi|336477163|ref|YP_004616304.1| - 0.23 11.4 11.9 0.77 9.8 8.2 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336477163|ref|YP_004616304.1| - 4.6 7.2 17.8 0.33 10.9 1.2 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336477163|ref|YP_004616304.1| - 7.6 6.9 14.2 12 6.2 2.8 2.7 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336477163|ref|YP_004616304.1| - 8.3 7.2 22.6 0.13 12.8 2.2 3.9 3 0 0 3 3 3 0 4Fe-4S binding domain OMPdecase PF00215.19 gi|336477164|ref|YP_004616305.1| - 1.4e-41 142.3 0.1 1.9e-41 141.9 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|336477164|ref|YP_004616305.1| - 0.0089 15.3 0.1 0.038 13.2 0.1 2.0 1 1 1 2 2 2 1 PcrB family Ribul_P_3_epim PF00834.14 gi|336477164|ref|YP_004616305.1| - 0.0097 15.0 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family DS PF01916.12 gi|336477165|ref|YP_004616306.1| - 5.6e-84 281.7 0.0 6.5e-84 281.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AMP-binding PF00501.23 gi|336477166|ref|YP_004616307.1| - 1.4e-96 323.4 0.0 1.8e-96 323.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336477166|ref|YP_004616307.1| - 2.7e-25 89.0 0.3 5.2e-25 88.1 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.6 gi|336477166|ref|YP_004616307.1| - 0.096 12.3 0.0 0.41 10.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) Metallophos PF00149.23 gi|336477168|ref|YP_004616309.1| - 2.8e-08 33.4 0.0 3.5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|336477168|ref|YP_004616309.1| - 8.7e-06 25.6 0.0 1.4e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|336477168|ref|YP_004616309.1| - 0.041 13.0 0.1 0.19 10.8 0.1 1.9 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Aldo_ket_red PF00248.16 gi|336477168|ref|YP_004616309.1| - 0.046 12.5 0.0 0.078 11.7 0.0 1.3 1 0 0 1 1 1 0 Aldo/keto reductase family DEAD_assoc PF08494.6 gi|336477169|ref|YP_004616310.1| - 8.3e-39 133.2 0.0 1.6e-38 132.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|336477169|ref|YP_004616310.1| - 3.8e-32 111.0 0.1 1.6e-31 109.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336477169|ref|YP_004616310.1| - 2.2e-18 65.8 0.0 1.2e-16 60.2 0.0 2.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336477169|ref|YP_004616310.1| - 7.5e-07 29.1 0.0 1.8e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|336477169|ref|YP_004616310.1| - 1.1e-05 24.3 0.3 4.1e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 SNF2 family N-terminal domain Ribosomal_S13 PF00416.17 gi|336477169|ref|YP_004616310.1| - 0.0088 16.4 0.3 0.27 11.6 0.0 3.1 2 0 0 2 2 2 1 Ribosomal protein S13/S18 AAA_25 PF13481.1 gi|336477169|ref|YP_004616310.1| - 0.036 13.4 0.1 0.21 10.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336477169|ref|YP_004616310.1| - 0.078 13.1 0.9 3.5 7.7 0.6 2.9 1 1 0 1 1 1 0 AAA domain zf-RING_3 PF14369.1 gi|336477169|ref|YP_004616310.1| - 0.4 10.7 1.4 0.71 9.9 0.5 1.8 2 0 0 2 2 2 0 zinc-finger DUF1947 PF09183.5 gi|336477169|ref|YP_004616310.1| - 0.55 10.0 4.2 0.26 11.0 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) Fer4_13 PF13370.1 gi|336477170|ref|YP_004616311.1| - 1.7e-22 79.5 6.8 2.1e-22 79.2 4.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336477170|ref|YP_004616311.1| - 5.4e-13 49.3 4.9 6.8e-13 48.9 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|336477170|ref|YP_004616311.1| - 1.7e-06 28.1 3.0 2.5e-06 27.6 2.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336477170|ref|YP_004616311.1| - 0.0033 16.9 10.2 0.0074 15.8 1.6 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336477170|ref|YP_004616311.1| - 0.0033 17.7 10.2 0.018 15.3 2.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336477170|ref|YP_004616311.1| - 0.0054 16.5 4.2 0.051 13.4 3.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|336477170|ref|YP_004616311.1| - 0.014 15.2 0.3 0.019 14.7 0.2 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_2 PF12797.2 gi|336477170|ref|YP_004616311.1| - 0.028 14.3 0.7 0.028 14.3 0.5 2.2 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336477170|ref|YP_004616311.1| - 0.039 13.7 4.8 0.12 12.1 3.5 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477170|ref|YP_004616311.1| - 0.21 12.3 4.3 5.3 7.8 1.7 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|336477170|ref|YP_004616311.1| - 0.73 9.8 5.9 2.4 8.1 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fe_dep_repress PF01325.14 gi|336477171|ref|YP_004616312.1| - 1.1e-20 73.3 0.9 1.8e-20 72.6 0.6 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|336477171|ref|YP_004616312.1| - 3.9e-15 55.2 0.0 6.8e-15 54.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|336477171|ref|YP_004616312.1| - 0.00013 21.5 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336477171|ref|YP_004616312.1| - 0.00015 21.4 0.1 0.0003 20.4 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336477171|ref|YP_004616312.1| - 0.00066 19.0 0.0 0.0013 18.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_6 PF01418.12 gi|336477171|ref|YP_004616312.1| - 0.001 18.7 0.0 0.0025 17.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family SWIRM PF04433.12 gi|336477171|ref|YP_004616312.1| - 0.0012 18.9 0.0 0.0047 17.0 0.0 1.9 2 0 0 2 2 2 1 SWIRM domain MarR PF01047.17 gi|336477171|ref|YP_004616312.1| - 0.0021 17.7 0.0 0.0045 16.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|336477171|ref|YP_004616312.1| - 0.0034 17.6 0.0 0.0064 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336477171|ref|YP_004616312.1| - 0.0036 17.3 0.0 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.5 gi|336477171|ref|YP_004616312.1| - 0.0055 16.3 0.0 0.0099 15.5 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator SBP_bac_8 PF13416.1 gi|336477171|ref|YP_004616312.1| - 0.0072 16.0 0.0 0.0089 15.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HTH_DeoR PF08220.7 gi|336477171|ref|YP_004616312.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.6 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|336477171|ref|YP_004616312.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|336477171|ref|YP_004616312.1| - 0.047 13.4 0.0 0.076 12.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PAS_3 PF08447.6 gi|336477171|ref|YP_004616312.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 PAS fold HTH_5 PF01022.15 gi|336477171|ref|YP_004616312.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|336477171|ref|YP_004616312.1| - 0.1 12.2 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PAX PF00292.13 gi|336477171|ref|YP_004616312.1| - 0.14 11.8 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain EamA PF00892.15 gi|336477172|ref|YP_004616313.1| - 2e-30 105.4 38.7 1.6e-17 63.7 11.6 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336477172|ref|YP_004616313.1| - 1.4e-06 28.4 7.3 1.4e-06 28.4 5.1 3.1 2 1 1 3 3 3 1 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|336477172|ref|YP_004616313.1| - 0.00057 18.8 9.4 0.00057 18.8 6.5 1.8 1 1 0 2 2 2 1 Eukaryotic protein of unknown function (DUF914) Radical_SAM PF04055.16 gi|336477173|ref|YP_004616314.1| - 0.00091 19.4 0.1 0.0022 18.2 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336477173|ref|YP_004616314.1| - 0.086 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain NMT1 PF09084.6 gi|336477174|ref|YP_004616315.1| - 1.1e-23 83.9 0.0 1.5e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|336477174|ref|YP_004616315.1| - 2.6e-22 79.4 0.0 3.6e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|336477174|ref|YP_004616315.1| - 5.3e-07 29.1 0.0 9.2e-07 28.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|336477174|ref|YP_004616315.1| - 3.2e-06 26.7 0.0 1.5e-05 24.4 0.0 1.8 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Ibs_toxin PF13956.1 gi|336477174|ref|YP_004616315.1| - 0.6 9.9 2.4 1.4 8.8 1.7 1.6 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system BPD_transp_1 PF00528.17 gi|336477175|ref|YP_004616316.1| - 1.1e-15 57.6 17.9 1.1e-15 57.6 12.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336477176|ref|YP_004616317.1| - 1.5e-30 106.2 0.0 2.2e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477176|ref|YP_004616317.1| - 1.9e-10 41.1 0.3 2.7e-05 24.2 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|336477176|ref|YP_004616317.1| - 2.1e-07 30.3 0.0 0.002 17.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|336477176|ref|YP_004616317.1| - 1.6e-05 24.1 0.1 3.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336477176|ref|YP_004616317.1| - 4.1e-05 23.6 0.6 0.00025 21.0 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|336477176|ref|YP_004616317.1| - 6.2e-05 23.0 0.1 0.019 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|336477176|ref|YP_004616317.1| - 0.00014 21.1 0.3 0.17 11.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336477176|ref|YP_004616317.1| - 0.0014 18.7 0.1 0.0068 16.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336477176|ref|YP_004616317.1| - 0.0015 18.7 0.1 0.013 15.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|336477176|ref|YP_004616317.1| - 0.0052 16.5 0.1 0.018 14.7 0.1 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|336477176|ref|YP_004616317.1| - 0.0058 16.1 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|336477176|ref|YP_004616317.1| - 0.0077 14.9 0.0 0.011 14.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein ATP-synt_ab PF00006.20 gi|336477176|ref|YP_004616317.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|336477176|ref|YP_004616317.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336477176|ref|YP_004616317.1| - 0.014 14.8 0.4 0.052 12.9 0.3 1.9 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|336477176|ref|YP_004616317.1| - 0.017 15.9 0.3 0.028 15.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336477176|ref|YP_004616317.1| - 0.02 14.8 0.3 0.05 13.5 0.2 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|336477176|ref|YP_004616317.1| - 0.035 14.4 1.2 0.063 13.5 0.1 2.1 3 1 0 3 3 2 0 AAA domain NACHT PF05729.7 gi|336477176|ref|YP_004616317.1| - 0.06 12.9 0.2 0.5 10.0 0.0 2.1 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|336477176|ref|YP_004616317.1| - 0.063 13.4 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase KaiC PF06745.8 gi|336477176|ref|YP_004616317.1| - 0.072 12.2 0.1 0.3 10.1 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_14 PF13173.1 gi|336477176|ref|YP_004616317.1| - 0.084 12.7 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|336477176|ref|YP_004616317.1| - 0.1 12.5 0.8 0.26 11.2 0.2 2.0 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|336477176|ref|YP_004616317.1| - 0.16 10.3 0.0 0.37 9.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|336477176|ref|YP_004616317.1| - 0.17 12.2 0.3 0.35 11.1 0.1 1.6 2 0 0 2 2 1 0 AAA domain HTH_24 PF13412.1 gi|336477177|ref|YP_004616318.1| - 4.7e-05 22.6 0.1 8.2e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|336477177|ref|YP_004616318.1| - 0.0003 20.4 0.0 0.00067 19.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|336477177|ref|YP_004616318.1| - 0.00048 19.7 0.0 0.00086 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|336477177|ref|YP_004616318.1| - 0.00068 19.2 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|336477177|ref|YP_004616318.1| - 0.0015 18.3 0.2 0.0015 18.3 0.2 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|336477177|ref|YP_004616318.1| - 0.0024 17.6 0.2 0.0036 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1959 PF09218.5 gi|336477177|ref|YP_004616318.1| - 0.0031 17.2 0.0 0.0079 15.9 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF1959) DUF2250 PF10007.4 gi|336477177|ref|YP_004616318.1| - 0.0041 16.9 0.1 0.0074 16.1 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|336477177|ref|YP_004616318.1| - 0.0045 17.0 0.1 0.0098 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|336477177|ref|YP_004616318.1| - 0.0046 16.7 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336477177|ref|YP_004616318.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family RPA_C PF08784.6 gi|336477177|ref|YP_004616318.1| - 0.027 14.8 0.0 0.045 14.1 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal FlaC_arch PF05377.6 gi|336477177|ref|YP_004616318.1| - 0.074 12.9 0.7 0.61 10.0 0.0 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) HTH_36 PF13730.1 gi|336477177|ref|YP_004616318.1| - 0.089 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AKAP_110 PF05716.8 gi|336477177|ref|YP_004616318.1| - 0.11 10.4 0.2 0.1 10.5 0.1 1.1 1 0 0 1 1 1 0 A-kinase anchor protein 110 kDa (AKAP 110) DUF4423 PF14394.1 gi|336477177|ref|YP_004616318.1| - 0.11 12.0 0.1 0.29 10.6 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) EAP30 PF04157.11 gi|336477177|ref|YP_004616318.1| - 0.11 11.5 0.1 0.18 10.9 0.0 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_40 PF14493.1 gi|336477177|ref|YP_004616318.1| - 0.14 12.3 0.3 0.27 11.4 0.2 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Cpn10 PF00166.16 gi|336477178|ref|YP_004616319.1| - 4.5e-22 77.8 1.3 4.9e-22 77.6 0.9 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Cpn60_TCP1 PF00118.19 gi|336477179|ref|YP_004616320.1| - 3.1e-124 415.2 16.5 3.6e-124 415.0 11.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Flavodoxin_2 PF02525.12 gi|336477180|ref|YP_004616321.1| - 3.6e-52 176.7 0.0 4.4e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|336477180|ref|YP_004616321.1| - 2.3e-12 46.6 0.0 3.5e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DNA_gyraseB PF00204.20 gi|336477181|ref|YP_004616322.1| - 5.9e-65 217.6 0.8 9.3e-65 217.0 0.6 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|336477181|ref|YP_004616322.1| - 4.6e-30 103.1 0.1 8.7e-30 102.2 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|336477181|ref|YP_004616322.1| - 1.1e-23 83.1 0.0 2.7e-23 81.8 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|336477181|ref|YP_004616322.1| - 2.7e-19 68.9 0.1 5.2e-19 67.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|336477181|ref|YP_004616322.1| - 2e-05 24.2 0.6 6e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|336477182|ref|YP_004616323.1| - 2e-159 530.9 2.5 2.9e-159 530.4 1.7 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|336477182|ref|YP_004616323.1| - 9.3e-69 226.5 18.9 3.4e-17 61.4 1.7 6.8 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller Syntaxin-6_N PF09177.6 gi|336477182|ref|YP_004616323.1| - 0.21 12.0 5.1 0.19 12.1 1.6 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal SOR_SNZ PF01680.12 gi|336477183|ref|YP_004616324.1| - 9e-108 358.6 8.6 1.2e-107 358.2 6.0 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|336477183|ref|YP_004616324.1| - 2e-09 36.8 9.1 2e-07 30.3 0.3 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|336477183|ref|YP_004616324.1| - 0.00025 20.1 0.2 0.0015 17.6 0.0 2.0 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|336477183|ref|YP_004616324.1| - 0.00025 19.9 0.9 0.15 10.8 0.0 2.5 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|336477183|ref|YP_004616324.1| - 0.00056 18.9 2.8 0.019 13.9 0.0 2.9 2 2 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|336477183|ref|YP_004616324.1| - 0.0018 17.5 0.7 0.0034 16.6 0.0 1.9 2 1 0 2 2 2 1 PcrB family DUF561 PF04481.7 gi|336477183|ref|YP_004616324.1| - 0.0045 15.9 0.4 0.086 11.7 0.0 2.3 1 1 1 3 3 3 1 Protein of unknown function (DUF561) NMO PF03060.10 gi|336477183|ref|YP_004616324.1| - 0.011 14.8 0.1 0.011 14.8 0.1 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase OMPdecase PF00215.19 gi|336477183|ref|YP_004616324.1| - 0.026 13.9 0.2 0.11 11.9 0.1 2.0 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF3175 PF11373.3 gi|336477183|ref|YP_004616324.1| - 0.065 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3175) SNO PF01174.14 gi|336477184|ref|YP_004616325.1| - 6.3e-46 156.3 0.0 7.2e-46 156.1 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|336477184|ref|YP_004616325.1| - 1.6e-06 27.7 0.2 1.7e-05 24.3 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|336477184|ref|YP_004616325.1| - 1.4e-05 24.7 0.2 2e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|336477184|ref|YP_004616325.1| - 0.00039 20.1 0.0 0.00054 19.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 Peptidase_C26 PF07722.8 gi|336477184|ref|YP_004616325.1| - 0.042 13.2 0.8 1.5 8.1 0.7 2.6 2 1 0 2 2 2 0 Peptidase C26 Ribosomal_S6e PF01092.14 gi|336477185|ref|YP_004616326.1| - 1.3e-33 115.3 1.6 1.5e-33 115.1 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|336477186|ref|YP_004616327.1| - 3.1e-32 111.5 0.1 4.5e-31 107.7 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|336477186|ref|YP_004616327.1| - 8.1e-24 83.6 0.8 8.1e-24 83.6 0.6 2.6 4 0 0 4 4 4 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|336477186|ref|YP_004616327.1| - 3e-12 46.0 2.8 8.8e-12 44.4 2.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|336477186|ref|YP_004616327.1| - 3.7e-12 46.1 6.9 2.4e-11 43.5 0.2 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336477186|ref|YP_004616327.1| - 5.4e-06 26.3 0.0 1.7e-05 24.7 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|336477186|ref|YP_004616327.1| - 0.0078 16.7 0.0 0.02 15.3 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|336477186|ref|YP_004616327.1| - 0.0084 15.6 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|336477186|ref|YP_004616327.1| - 0.01 15.6 0.3 0.62 9.8 0.0 3.1 4 0 0 4 4 4 0 Dynamin family DNA_pol3_beta_3 PF02768.10 gi|336477186|ref|YP_004616327.1| - 0.05 13.1 0.9 0.7 9.4 0.0 2.7 3 0 0 3 3 3 0 DNA polymerase III beta subunit, C-terminal domain PduV-EutP PF10662.4 gi|336477186|ref|YP_004616327.1| - 0.061 12.8 0.1 0.52 9.7 0.0 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation NDK PF00334.14 gi|336477187|ref|YP_004616328.1| - 3.1e-55 185.6 0.1 3.5e-55 185.4 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase ACT_5 PF13710.1 gi|336477187|ref|YP_004616328.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 ACT domain Ribosomal_L24e PF01246.15 gi|336477188|ref|YP_004616329.1| - 2.1e-18 65.9 1.0 2.1e-18 65.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|336477188|ref|YP_004616329.1| - 4.5e-06 26.1 7.0 5.7e-06 25.8 4.9 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|336477188|ref|YP_004616329.1| - 0.042 13.6 4.6 0.081 12.7 3.2 1.5 1 0 0 1 1 1 0 YHS domain DUF329 PF03884.9 gi|336477188|ref|YP_004616329.1| - 0.4 10.2 3.1 1.8 8.1 2.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-C2HC5 PF06221.8 gi|336477188|ref|YP_004616329.1| - 1.1 9.0 4.3 12 5.6 0.4 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|336477188|ref|YP_004616329.1| - 1.5 8.1 6.3 16 4.8 4.4 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S28e PF01200.13 gi|336477189|ref|YP_004616330.1| - 5.6e-28 96.4 0.3 6.1e-28 96.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|336477190|ref|YP_004616331.1| - 1.9e-27 94.6 1.5 2.2e-27 94.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|336477190|ref|YP_004616331.1| - 0.0027 17.4 0.1 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|336477190|ref|YP_004616331.1| - 0.058 13.6 0.1 0.079 13.2 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1542 PF07564.6 gi|336477190|ref|YP_004616331.1| - 0.12 12.3 0.6 0.25 11.3 0.1 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) UPF0014 PF03649.8 gi|336477192|ref|YP_004616333.1| - 1e-40 139.5 14.5 1.3e-40 139.1 10.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) DUF1212 PF06738.7 gi|336477192|ref|YP_004616333.1| - 3.2 7.1 9.4 1.4 8.3 2.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) ABC_tran PF00005.22 gi|336477193|ref|YP_004616334.1| - 6.2e-25 88.0 0.0 8e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477193|ref|YP_004616334.1| - 8.7e-11 42.3 9.0 2e-08 34.5 5.0 2.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336477193|ref|YP_004616334.1| - 5.9e-07 28.9 1.4 1.3e-05 24.5 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|336477193|ref|YP_004616334.1| - 0.00022 21.0 0.0 0.024 14.5 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|336477193|ref|YP_004616334.1| - 0.00022 21.5 0.8 0.0054 17.0 0.6 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336477193|ref|YP_004616334.1| - 0.00024 20.5 0.1 0.00045 19.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|336477193|ref|YP_004616334.1| - 0.00031 21.5 2.3 0.0016 19.2 1.6 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336477193|ref|YP_004616334.1| - 0.0017 17.5 0.0 0.0025 17.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|336477193|ref|YP_004616334.1| - 0.0017 18.2 0.8 0.065 13.1 0.0 2.2 1 1 1 2 2 2 1 AAA domain G-alpha PF00503.15 gi|336477193|ref|YP_004616334.1| - 0.015 14.0 0.7 0.029 13.0 0.0 1.7 2 0 0 2 2 2 0 G-protein alpha subunit DAP3 PF10236.4 gi|336477193|ref|YP_004616334.1| - 0.035 13.0 0.1 0.069 12.0 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 T2SE PF00437.15 gi|336477193|ref|YP_004616334.1| - 0.04 12.8 0.0 0.057 12.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF815 PF05673.8 gi|336477193|ref|YP_004616334.1| - 0.062 12.2 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|336477193|ref|YP_004616334.1| - 0.071 13.0 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|336477193|ref|YP_004616334.1| - 0.081 13.4 0.0 0.26 11.7 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|336477193|ref|YP_004616334.1| - 0.082 12.3 1.0 0.12 11.7 0.7 1.5 1 1 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|336477193|ref|YP_004616334.1| - 0.09 12.9 0.7 0.31 11.2 0.1 2.3 2 1 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|336477193|ref|YP_004616334.1| - 0.14 11.7 0.3 0.28 10.8 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|336477193|ref|YP_004616334.1| - 1 9.6 9.3 3.7 7.8 6.4 1.8 1 1 0 1 1 1 0 AAA domain GHMP_kinases_N PF00288.21 gi|336477194|ref|YP_004616335.1| - 1.3e-09 37.9 1.9 2.9e-09 36.8 1.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|336477194|ref|YP_004616335.1| - 0.0025 17.9 0.0 0.0093 16.1 0.0 2.0 1 0 0 1 1 1 1 GHMP kinases C terminal CM_2 PF01817.16 gi|336477195|ref|YP_004616336.1| - 3.9e-15 55.6 5.0 4.5e-15 55.5 3.5 1.0 1 0 0 1 1 1 1 Chorismate mutase type II HTH_24 PF13412.1 gi|336477195|ref|YP_004616336.1| - 0.052 12.9 1.0 0.49 9.8 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding CENP-H PF05837.7 gi|336477195|ref|YP_004616336.1| - 0.09 12.9 0.8 0.11 12.7 0.5 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) HrcA_DNA-bdg PF03444.10 gi|336477195|ref|YP_004616336.1| - 0.13 11.7 0.2 0.21 11.0 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AIRC PF00731.15 gi|336477196|ref|YP_004616337.1| - 9.9e-45 151.4 1.5 1.1e-44 151.2 1.0 1.0 1 0 0 1 1 1 1 AIR carboxylase ABC_sub_bind PF04392.7 gi|336477196|ref|YP_004616337.1| - 0.009 14.9 0.4 0.06 12.3 0.0 1.9 2 0 0 2 2 2 1 ABC transporter substrate binding protein DXP_reductoisom PF02670.11 gi|336477196|ref|YP_004616337.1| - 0.067 13.7 0.0 0.075 13.5 0.0 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase B12-binding PF02310.14 gi|336477196|ref|YP_004616337.1| - 0.073 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain NikR_C PF08753.6 gi|336477197|ref|YP_004616338.1| - 6.2e-20 70.8 0.0 8.6e-20 70.4 0.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|336477197|ref|YP_004616338.1| - 2.6e-05 23.8 0.0 5.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family POR_N PF01855.14 gi|336477198|ref|YP_004616339.1| - 2e-55 187.8 0.4 4.2e-55 186.7 0.3 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|336477198|ref|YP_004616339.1| - 4.8e-39 134.0 0.0 1e-38 132.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|336477198|ref|YP_004616339.1| - 3.2e-06 26.7 0.2 4.8e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|336477198|ref|YP_004616339.1| - 0.00043 20.2 0.0 0.0013 18.6 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|336477199|ref|YP_004616340.1| - 8.3e-28 96.8 0.1 1.3e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|336477199|ref|YP_004616340.1| - 5.2e-27 93.5 0.1 9e-27 92.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Methyltransf_26 PF13659.1 gi|336477200|ref|YP_004616341.1| - 9.2e-12 45.0 0.0 1.4e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336477200|ref|YP_004616341.1| - 6.1e-10 38.7 0.0 8.2e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|336477200|ref|YP_004616341.1| - 5.4e-07 29.3 0.0 8.1e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336477200|ref|YP_004616341.1| - 0.00012 21.3 0.1 0.00019 20.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|336477200|ref|YP_004616341.1| - 0.0009 18.7 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.1 gi|336477200|ref|YP_004616341.1| - 0.001 18.8 0.0 0.0016 18.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477200|ref|YP_004616341.1| - 0.0031 18.0 0.1 0.0059 17.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|336477200|ref|YP_004616341.1| - 0.0098 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|336477200|ref|YP_004616341.1| - 0.032 14.7 0.0 0.074 13.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336477200|ref|YP_004616341.1| - 0.043 14.3 0.0 0.091 13.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|336477201|ref|YP_004616342.1| - 1.1e-57 195.0 0.0 1.4e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|336477201|ref|YP_004616342.1| - 3.9e-08 33.3 0.0 5.3e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477201|ref|YP_004616342.1| - 6.7e-07 29.8 0.0 1.5e-06 28.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|336477201|ref|YP_004616342.1| - 3.3e-05 23.5 0.0 6.1e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|336477201|ref|YP_004616342.1| - 0.00067 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336477201|ref|YP_004616342.1| - 0.0016 18.1 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|336477201|ref|YP_004616342.1| - 0.0016 17.8 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|336477201|ref|YP_004616342.1| - 0.0055 15.7 0.0 0.009 15.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase DOT1 PF08123.8 gi|336477201|ref|YP_004616342.1| - 0.0092 15.3 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 MTS PF05175.9 gi|336477201|ref|YP_004616342.1| - 0.011 15.1 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|336477201|ref|YP_004616342.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336477201|ref|YP_004616342.1| - 0.019 15.4 0.0 0.039 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336477201|ref|YP_004616342.1| - 0.024 15.0 0.0 0.053 14.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Microcin PF03526.8 gi|336477201|ref|YP_004616342.1| - 0.089 12.3 0.3 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 Colicin E1 (microcin) immunity protein DUF655 PF04919.7 gi|336477202|ref|YP_004616343.1| - 3.6e-71 238.5 0.5 4.1e-71 238.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|336477202|ref|YP_004616343.1| - 1.3e-05 24.9 0.0 4e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|336477202|ref|YP_004616343.1| - 0.00016 21.6 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|336477203|ref|YP_004616344.1| - 4.1e-15 55.8 7.0 4.7e-15 55.6 4.9 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 Imm45 PF15603.1 gi|336477203|ref|YP_004616344.1| - 0.023 14.8 1.4 2.2 8.5 0.0 2.4 2 1 0 2 2 2 0 Immunity protein 45 RAG1 PF12940.2 gi|336477203|ref|YP_004616344.1| - 0.026 12.9 0.6 0.033 12.5 0.4 1.1 1 0 0 1 1 1 0 Recombination-activation protein 1 (RAG1) DUF1389 PF07146.6 gi|336477203|ref|YP_004616344.1| - 0.062 12.3 0.6 0.08 11.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1389) EcoR124_C PF12008.3 gi|336477203|ref|YP_004616344.1| - 0.078 12.1 5.3 0.05 12.7 2.5 1.5 1 1 0 1 1 1 0 Type I restriction and modification enzyme - subunit R C terminal Frankia_peptide PF14407.1 gi|336477203|ref|YP_004616344.1| - 0.17 11.6 1.2 0.36 10.6 0.2 2.0 2 1 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. FliG_M PF14841.1 gi|336477203|ref|YP_004616344.1| - 0.28 11.2 3.4 0.41 10.6 0.2 2.2 2 0 0 2 2 2 0 FliG middle domain FDX-ACB PF03147.9 gi|336477203|ref|YP_004616344.1| - 0.42 10.8 2.7 3.2 8.0 0.1 2.6 2 1 1 3 3 3 0 Ferredoxin-fold anticodon binding domain Glycos_trans_3N PF02885.12 gi|336477203|ref|YP_004616344.1| - 0.64 9.6 4.2 2.3 7.8 0.2 3.0 2 1 1 3 3 3 0 Glycosyl transferase family, helical bundle domain Orbi_VP5 PF00901.12 gi|336477203|ref|YP_004616344.1| - 0.91 7.6 9.8 1 7.4 6.8 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 FumaraseC_C PF10415.4 gi|336477203|ref|YP_004616344.1| - 0.95 9.5 4.1 1.6 8.8 0.0 2.7 2 1 0 3 3 3 0 Fumarase C C-terminus EF-hand_7 PF13499.1 gi|336477203|ref|YP_004616344.1| - 1 9.5 3.5 16 5.7 0.2 2.5 2 1 0 2 2 2 0 EF-hand domain pair Bac_DNA_binding PF00216.16 gi|336477203|ref|YP_004616344.1| - 1.1 9.3 3.5 5.1 7.1 0.3 2.4 2 1 0 2 2 2 0 Bacterial DNA-binding protein Ribosomal_L21e PF01157.13 gi|336477204|ref|YP_004616345.1| - 5.1e-27 93.5 0.4 5.7e-27 93.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|336477205|ref|YP_004616346.1| - 5.1e-12 45.8 0.0 1.3e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 THUMP domain SRR1 PF07985.7 gi|336477205|ref|YP_004616346.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 SRR1 Methyltrn_RNA_2 PF04013.7 gi|336477206|ref|YP_004616347.1| - 9.9e-60 201.4 0.0 1.1e-59 201.3 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Phage_integrase PF00589.17 gi|336477207|ref|YP_004616348.1| - 8.5e-27 93.9 0.3 1.5e-26 93.1 0.2 1.4 1 0 0 1 1 1 1 Phage integrase family DUF3435 PF11917.3 gi|336477207|ref|YP_004616348.1| - 3.5e-05 22.7 0.1 6.4e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) DZR PF12773.2 gi|336477207|ref|YP_004616348.1| - 0.00037 20.2 0.3 0.0008 19.1 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336477207|ref|YP_004616348.1| - 0.0028 17.0 4.1 0.0052 16.2 2.9 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Cript PF10235.4 gi|336477207|ref|YP_004616348.1| - 0.04 14.2 0.1 0.094 13.0 0.1 1.6 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT zf-ribbon_3 PF13248.1 gi|336477207|ref|YP_004616348.1| - 0.04 13.1 4.7 0.07 12.3 3.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain GFA PF04828.9 gi|336477207|ref|YP_004616348.1| - 0.048 13.6 0.2 0.13 12.2 0.1 1.7 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme TPR_11 PF13414.1 gi|336477210|ref|YP_004616351.1| - 5.4e-36 122.0 24.4 1.1e-11 44.2 0.6 7.0 3 1 2 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|336477210|ref|YP_004616351.1| - 2.1e-35 117.7 16.7 7.4e-06 25.4 0.0 10.2 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_1 PF00515.23 gi|336477210|ref|YP_004616351.1| - 4e-34 114.8 24.3 7.7e-08 31.6 0.0 10.3 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|336477210|ref|YP_004616351.1| - 1.8e-24 85.7 0.1 3e-05 24.5 0.4 6.3 5 1 0 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|336477210|ref|YP_004616351.1| - 3.3e-23 81.3 10.8 1.8e-07 30.9 0.9 6.7 5 1 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|336477210|ref|YP_004616351.1| - 4e-22 76.2 28.4 9.6e-05 21.9 0.1 10.4 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|336477210|ref|YP_004616351.1| - 1.9e-21 74.4 13.2 0.0084 16.2 0.0 8.1 8 0 0 8 8 7 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|336477210|ref|YP_004616351.1| - 6e-19 68.1 2.1 0.0001 22.5 0.0 6.7 6 1 0 7 7 7 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|336477210|ref|YP_004616351.1| - 6.4e-17 61.4 22.5 6.8e-08 32.5 3.5 5.7 3 1 3 6 6 6 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|336477210|ref|YP_004616351.1| - 2.5e-16 59.2 0.0 0.00051 19.8 0.0 6.0 3 1 3 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|336477210|ref|YP_004616351.1| - 5.9e-08 32.6 0.0 0.68 10.7 0.0 7.1 5 1 4 9 9 8 1 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|336477210|ref|YP_004616351.1| - 2.2e-06 26.7 2.3 0.037 13.2 0.0 4.6 5 0 0 5 5 5 2 SHNi-TPR TPR_6 PF13174.1 gi|336477210|ref|YP_004616351.1| - 1.8e-05 24.8 10.3 3.8 8.1 0.1 8.4 9 0 0 9 9 9 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|336477210|ref|YP_004616351.1| - 4.1e-05 23.0 4.1 8.8 6.4 0.0 7.2 8 0 0 8 8 7 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|336477210|ref|YP_004616351.1| - 0.00013 21.7 9.9 0.37 10.6 0.0 6.4 6 1 1 7 7 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|336477210|ref|YP_004616351.1| - 0.00015 20.9 4.0 0.023 13.7 1.2 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|336477210|ref|YP_004616351.1| - 0.00029 20.5 11.2 0.52 10.1 0.1 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|336477210|ref|YP_004616351.1| - 0.0028 17.4 0.1 2 8.2 0.0 3.3 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) GatB_N PF02934.10 gi|336477210|ref|YP_004616351.1| - 0.086 11.6 0.1 0.15 10.9 0.1 1.3 1 0 0 1 1 1 0 GatB/GatE catalytic domain PPR PF01535.15 gi|336477210|ref|YP_004616351.1| - 0.11 12.5 1.3 13 6.0 0.0 4.2 4 0 0 4 4 3 0 PPR repeat MIT PF04212.13 gi|336477210|ref|YP_004616351.1| - 0.19 11.6 7.8 43 4.0 0.2 5.2 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|336477210|ref|YP_004616351.1| - 7.2 6.6 6.4 1.9e+02 2.1 0.0 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat LMWPc PF01451.16 gi|336477211|ref|YP_004616352.1| - 3.3e-08 33.9 0.0 6e-06 26.6 0.0 2.1 1 1 1 2 2 2 2 Low molecular weight phosphotyrosine protein phosphatase NADH-G_4Fe-4S_3 PF10588.4 gi|336477212|ref|YP_004616353.1| - 1.5 8.0 5.3 20 4.4 1.2 2.6 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IF2_N PF04760.10 gi|336477213|ref|YP_004616354.1| - 0.018 14.6 0.1 0.048 13.3 0.1 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_24 PF13412.1 gi|336477213|ref|YP_004616354.1| - 0.056 12.8 0.2 0.2 11.0 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF869 PF05911.6 gi|336477213|ref|YP_004616354.1| - 0.13 10.4 7.4 0.18 10.0 5.1 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) AAA PF00004.24 gi|336477214|ref|YP_004616355.1| - 1.2e-45 154.9 0.3 4.9e-45 152.9 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|336477214|ref|YP_004616355.1| - 3.2e-08 33.6 0.0 7.6e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|336477214|ref|YP_004616355.1| - 2.1e-06 27.9 1.9 6.3e-05 23.1 0.2 3.0 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|336477214|ref|YP_004616355.1| - 3.8e-06 26.8 0.7 1.3e-05 25.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336477214|ref|YP_004616355.1| - 3.3e-05 24.6 0.0 9.5e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336477214|ref|YP_004616355.1| - 3.4e-05 23.9 0.0 0.00015 21.7 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|336477214|ref|YP_004616355.1| - 4.9e-05 22.5 0.0 8.8e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Arch_ATPase PF01637.13 gi|336477214|ref|YP_004616355.1| - 8.5e-05 22.3 4.8 0.18 11.4 0.2 3.0 2 1 1 3 3 3 2 Archaeal ATPase AAA_5 PF07728.9 gi|336477214|ref|YP_004616355.1| - 8.5e-05 22.3 0.0 0.00039 20.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|336477214|ref|YP_004616355.1| - 0.00047 18.9 0.0 0.00078 18.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus Viral_helicase1 PF01443.13 gi|336477214|ref|YP_004616355.1| - 0.00058 19.4 0.9 0.0011 18.5 0.0 1.8 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|336477214|ref|YP_004616355.1| - 0.00063 20.0 0.3 0.0017 18.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain MIT PF04212.13 gi|336477214|ref|YP_004616355.1| - 0.00083 19.1 1.7 0.0016 18.2 1.2 1.5 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_33 PF13671.1 gi|336477214|ref|YP_004616355.1| - 0.00089 19.1 0.0 0.0025 17.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|336477214|ref|YP_004616355.1| - 0.0009 19.5 0.6 0.0023 18.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter RNA_helicase PF00910.17 gi|336477214|ref|YP_004616355.1| - 0.0011 19.0 0.0 0.0032 17.6 0.0 1.9 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.8 gi|336477214|ref|YP_004616355.1| - 0.0017 17.3 0.0 0.003 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|336477214|ref|YP_004616355.1| - 0.0044 16.1 0.1 0.0096 15.1 0.1 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|336477214|ref|YP_004616355.1| - 0.0045 16.4 0.1 0.09 12.2 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain SKI PF01202.17 gi|336477214|ref|YP_004616355.1| - 0.007 16.2 2.1 0.1 12.4 0.1 2.7 3 0 0 3 3 3 1 Shikimate kinase IstB_IS21 PF01695.12 gi|336477214|ref|YP_004616355.1| - 0.0084 15.5 0.0 0.018 14.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein KaiC PF06745.8 gi|336477214|ref|YP_004616355.1| - 0.0092 15.1 1.1 0.13 11.3 0.0 2.3 1 1 1 2 2 2 1 KaiC ATP-synt_ab PF00006.20 gi|336477214|ref|YP_004616355.1| - 0.015 14.7 0.4 0.04 13.3 0.0 1.8 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.1 gi|336477214|ref|YP_004616355.1| - 0.017 14.8 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_3 PF07726.6 gi|336477214|ref|YP_004616355.1| - 0.018 14.6 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|336477214|ref|YP_004616355.1| - 0.021 14.2 0.5 0.48 9.8 0.1 2.3 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|336477214|ref|YP_004616355.1| - 0.024 14.2 0.3 0.062 12.8 0.2 1.8 1 1 1 2 2 2 0 AAA domain Bac_DnaA PF00308.13 gi|336477214|ref|YP_004616355.1| - 0.024 14.2 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein Zeta_toxin PF06414.7 gi|336477214|ref|YP_004616355.1| - 0.034 13.2 0.0 0.085 11.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ResIII PF04851.10 gi|336477214|ref|YP_004616355.1| - 0.098 12.4 4.3 0.37 10.5 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin2 PF13189.1 gi|336477214|ref|YP_004616355.1| - 0.1 12.4 0.1 0.1 12.4 0.1 2.1 2 0 0 2 2 2 0 Cytidylate kinase-like family Sigma54_activ_2 PF14532.1 gi|336477214|ref|YP_004616355.1| - 0.13 12.2 0.0 0.37 10.8 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|336477214|ref|YP_004616355.1| - 0.14 11.7 0.2 3.3 7.3 0.0 2.5 2 1 1 3 3 3 0 NACHT domain Snf7 PF03357.16 gi|336477215|ref|YP_004616356.1| - 0.00072 18.9 21.4 0.0018 17.6 14.8 1.7 1 1 0 1 1 1 1 Snf7 Trns_repr_metal PF02583.12 gi|336477215|ref|YP_004616356.1| - 0.17 12.1 0.1 0.17 12.1 0.1 2.4 3 1 0 3 3 3 0 Metal-sensitive transcriptional repressor GreA_GreB_N PF03449.10 gi|336477215|ref|YP_004616356.1| - 0.47 10.5 6.5 0.35 10.9 2.1 2.3 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal HSCB_C PF07743.8 gi|336477215|ref|YP_004616356.1| - 3.4 8.1 10.9 2.1 8.8 1.1 2.7 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain RHH_1 PF01402.16 gi|336477216|ref|YP_004616357.1| - 0.00091 19.0 0.1 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family zf-ribbon_3 PF13248.1 gi|336477217|ref|YP_004616358.1| - 8.9e-07 27.9 0.3 1.4e-06 27.2 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336477217|ref|YP_004616358.1| - 2.3e-06 26.8 0.9 4.1e-06 26.1 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Band_7 PF01145.20 gi|336477217|ref|YP_004616358.1| - 3.2e-05 23.9 2.2 4.5e-05 23.4 0.1 2.3 2 1 0 2 2 2 1 SPFH domain / Band 7 family DZR PF12773.2 gi|336477217|ref|YP_004616358.1| - 0.00018 21.2 0.9 0.00031 20.5 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|336477217|ref|YP_004616358.1| - 0.0039 16.8 1.1 0.0071 16.0 0.7 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|336477217|ref|YP_004616358.1| - 0.21 11.4 0.8 0.47 10.2 0.5 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-DHHC PF01529.15 gi|336477217|ref|YP_004616358.1| - 0.33 10.3 2.0 0.44 9.9 0.9 1.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase OpuAC PF04069.7 gi|336477218|ref|YP_004616359.1| - 9.5e-66 221.7 2.3 1.4e-65 221.2 1.6 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_5 PF00496.17 gi|336477218|ref|YP_004616359.1| - 0.012 14.4 0.1 0.019 13.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle RBFA PF02033.13 gi|336477220|ref|YP_004616361.1| - 0.015 15.2 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Ribosome-binding factor A Amidase02_C PF12123.3 gi|336477220|ref|YP_004616361.1| - 0.073 12.7 0.2 6.7 6.4 0.0 2.5 2 0 0 2 2 2 0 N-acetylmuramoyl-l-alanine amidase NYN PF01936.13 gi|336477221|ref|YP_004616362.1| - 1.3e-21 77.4 0.2 1.6e-21 77.1 0.1 1.0 1 0 0 1 1 1 1 NYN domain ResIII PF04851.10 gi|336477223|ref|YP_004616364.1| - 1.9e-14 53.8 0.1 1.9e-14 53.8 0.1 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|336477223|ref|YP_004616364.1| - 1e-10 41.3 0.0 3.3e-10 39.6 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain TPR_11 PF13414.1 gi|336477223|ref|YP_004616364.1| - 7.3e-08 31.9 9.3 3.2e-05 23.4 3.0 4.1 2 1 1 3 3 3 2 TPR repeat DEAD PF00270.24 gi|336477223|ref|YP_004616364.1| - 3.8e-06 26.4 0.0 1.2e-05 24.8 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase TPR_17 PF13431.1 gi|336477223|ref|YP_004616364.1| - 3.6e-05 23.6 7.1 0.056 13.6 0.0 5.2 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|336477223|ref|YP_004616364.1| - 0.00068 19.7 0.0 0.0051 16.8 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|336477223|ref|YP_004616364.1| - 0.0018 18.0 17.8 0.21 11.5 0.6 6.3 6 0 0 6 6 6 2 Tetratricopeptide repeat SNAP PF14938.1 gi|336477223|ref|YP_004616364.1| - 0.0022 17.1 10.1 0.033 13.3 7.0 2.4 1 1 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_16 PF13432.1 gi|336477223|ref|YP_004616364.1| - 0.003 18.1 0.7 0.43 11.3 0.0 3.2 2 1 1 3 3 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|336477223|ref|YP_004616364.1| - 0.004 17.0 10.9 0.71 9.8 2.8 4.1 3 1 0 3 3 3 2 Tetratricopeptide repeat AAA_22 PF13401.1 gi|336477223|ref|YP_004616364.1| - 0.018 15.1 1.0 0.37 10.9 0.0 3.4 4 0 0 4 4 3 0 AAA domain TPR_19 PF14559.1 gi|336477223|ref|YP_004616364.1| - 0.045 14.1 2.2 1.6 9.0 0.1 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|336477223|ref|YP_004616364.1| - 0.08 13.6 0.0 11 6.9 0.0 4.0 3 2 0 4 4 4 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|336477223|ref|YP_004616364.1| - 0.26 10.9 25.0 0.081 12.5 0.4 6.2 7 1 0 7 7 7 0 Tetratricopeptide repeat DEAD PF00270.24 gi|336477224|ref|YP_004616365.1| - 1.6e-14 53.7 0.0 5.1e-12 45.6 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336477224|ref|YP_004616365.1| - 1.9e-06 27.6 0.0 5.5e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_11 PF13086.1 gi|336477224|ref|YP_004616365.1| - 0.018 14.6 0.1 0.039 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF1998 PF09369.5 gi|336477224|ref|YP_004616365.1| - 0.06 13.9 0.0 0.23 12.0 0.0 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1998) DUF35_N PF12172.3 gi|336477224|ref|YP_004616365.1| - 4.5 7.3 14.8 0.93 9.4 0.4 3.5 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DDE_Tnp_1 PF01609.16 gi|336477226|ref|YP_004616367.1| - 3.2e-14 52.9 2.2 4.5e-14 52.4 1.5 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|336477226|ref|YP_004616367.1| - 0.0061 16.7 1.9 0.007 16.5 0.3 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|336477226|ref|YP_004616367.1| - 0.0082 15.7 1.0 0.012 15.2 0.7 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|336477226|ref|YP_004616367.1| - 0.017 14.8 1.6 0.048 13.3 1.1 1.8 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|336477226|ref|YP_004616367.1| - 0.042 13.8 0.6 0.089 12.7 0.4 1.5 1 0 0 1 1 1 0 Transposase DDE domain HD_4 PF13328.1 gi|336477227|ref|YP_004616368.1| - 1.1e-11 44.7 0.0 1.2e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 HD domain DUF2312 PF10073.4 gi|336477227|ref|YP_004616368.1| - 0.042 13.2 0.1 0.086 12.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) HD PF01966.17 gi|336477227|ref|YP_004616368.1| - 0.065 13.2 0.1 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 HD domain CPSase_L_D3 PF02787.14 gi|336477227|ref|YP_004616368.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PglZ PF08665.7 gi|336477229|ref|YP_004616370.1| - 4.6e-39 133.9 0.0 8.5e-39 133.0 0.0 1.4 1 0 0 1 1 1 1 PglZ domain SNF2_N PF00176.18 gi|336477230|ref|YP_004616371.1| - 2.8e-20 72.3 0.0 1e-19 70.4 0.0 1.8 1 1 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|336477230|ref|YP_004616371.1| - 1.1e-19 70.0 0.0 2.3e-19 68.9 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336477230|ref|YP_004616371.1| - 1.7e-08 34.5 0.0 1.1e-07 31.9 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|336477230|ref|YP_004616371.1| - 3.5e-05 23.3 0.0 0.36 10.3 0.0 4.0 4 0 0 4 4 4 2 DEAD/DEAH box helicase Rota_NSP3 PF01665.11 gi|336477230|ref|YP_004616371.1| - 0.018 14.0 0.3 4 6.3 0.0 2.8 3 0 0 3 3 3 0 Rotavirus non-structural protein NSP3 UvrD-helicase PF00580.16 gi|336477231|ref|YP_004616372.1| - 9.3e-60 202.5 6.5 4.1e-30 105.1 1.5 2.6 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|336477231|ref|YP_004616372.1| - 5.5e-37 128.0 2.7 6.4e-37 127.8 0.7 2.0 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|336477231|ref|YP_004616372.1| - 3.1e-11 42.8 0.0 6.8e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|336477231|ref|YP_004616372.1| - 5.7e-10 39.2 0.0 1.8e-09 37.6 0.0 1.9 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|336477231|ref|YP_004616372.1| - 1.1e-07 31.6 0.0 0.00074 19.1 0.0 3.5 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|336477231|ref|YP_004616372.1| - 1.5e-06 27.8 0.0 3.7e-06 26.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.1 gi|336477231|ref|YP_004616372.1| - 0.00024 20.5 0.4 0.21 10.9 0.0 2.8 3 1 0 3 3 3 2 AAA domain DEAD PF00270.24 gi|336477231|ref|YP_004616372.1| - 0.0049 16.3 0.0 0.015 14.8 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|336477231|ref|YP_004616372.1| - 0.036 14.0 0.0 0.38 10.7 0.0 2.4 2 1 0 2 2 2 0 AAA ATPase domain Gelsolin PF00626.17 gi|336477231|ref|YP_004616372.1| - 0.037 13.7 0.0 0.088 12.5 0.0 1.6 1 0 0 1 1 1 0 Gelsolin repeat DUF2813 PF11398.3 gi|336477232|ref|YP_004616373.1| - 1.8e-55 188.5 0.2 2.2e-55 188.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_15 PF13175.1 gi|336477232|ref|YP_004616373.1| - 1.5e-25 90.1 6.6 6.7e-14 51.7 4.9 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|336477232|ref|YP_004616373.1| - 7.4e-21 75.3 6.6 1.3e-20 74.5 4.6 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|336477232|ref|YP_004616373.1| - 7.8e-13 49.2 9.7 1.7e-12 48.1 6.7 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336477232|ref|YP_004616373.1| - 1.7e-07 30.6 0.6 3.3e-07 29.7 0.4 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336477232|ref|YP_004616373.1| - 0.00038 19.9 0.0 0.00083 18.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Roughex PF06020.6 gi|336477232|ref|YP_004616373.1| - 0.05 12.2 0.0 0.097 11.3 0.0 1.4 1 0 0 1 1 1 0 Drosophila roughex protein AAA_30 PF13604.1 gi|336477233|ref|YP_004616374.1| - 2.8e-24 85.8 0.0 4.8e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.1 gi|336477233|ref|YP_004616374.1| - 5.1e-15 55.4 0.0 1.3e-14 54.2 0.0 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|336477233|ref|YP_004616374.1| - 3.7e-12 46.2 0.0 0.00017 21.2 0.0 3.1 2 1 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|336477233|ref|YP_004616374.1| - 4e-12 46.2 0.1 5.5e-07 29.3 0.1 2.4 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|336477233|ref|YP_004616374.1| - 8.5e-12 44.6 0.0 2e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Helicase_RecD PF05127.9 gi|336477233|ref|YP_004616374.1| - 5.9e-06 26.0 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_22 PF13401.1 gi|336477233|ref|YP_004616374.1| - 1.7e-05 24.9 0.0 8.7e-05 22.6 0.0 2.3 2 1 0 2 2 1 1 AAA domain DUF2075 PF09848.4 gi|336477233|ref|YP_004616374.1| - 2.8e-05 23.2 0.0 0.04 12.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|336477233|ref|YP_004616374.1| - 0.0004 20.1 0.0 0.0012 18.6 0.0 1.8 1 0 0 1 1 1 1 Archaeal ATPase PIF1 PF05970.9 gi|336477233|ref|YP_004616374.1| - 0.0015 17.5 0.0 0.0049 15.8 0.0 1.7 1 1 0 1 1 1 1 PIF1-like helicase HHH_4 PF14490.1 gi|336477233|ref|YP_004616374.1| - 0.017 14.8 0.0 0.14 11.9 0.0 2.4 1 1 0 1 1 1 0 Helix-hairpin-helix containing domain DUF258 PF03193.11 gi|336477233|ref|YP_004616374.1| - 0.07 12.3 0.3 0.17 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|336477233|ref|YP_004616374.1| - 0.077 13.2 0.0 0.3 11.3 0.0 2.0 1 0 0 1 1 1 0 ABC transporter PhoH PF02562.11 gi|336477233|ref|YP_004616374.1| - 0.13 11.5 0.0 3.5 6.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein Vps39_1 PF10366.4 gi|336477233|ref|YP_004616374.1| - 0.13 12.3 0.1 0.4 10.7 0.0 1.8 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 1 N6_N4_Mtase PF01555.13 gi|336477234|ref|YP_004616375.1| - 3.2e-15 56.2 1.3 3.7e-10 39.6 0.0 2.8 3 0 0 3 3 3 2 DNA methylase Methyltransf_26 PF13659.1 gi|336477234|ref|YP_004616375.1| - 2.7e-05 24.1 0.0 0.00031 20.7 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336477234|ref|YP_004616375.1| - 0.0027 17.1 0.0 0.014 14.8 0.0 2.2 2 1 0 2 2 2 1 Conserved hypothetical protein 95 PhnA_Zn_Ribbon PF08274.7 gi|336477234|ref|YP_004616375.1| - 0.069 12.9 1.6 0.21 11.4 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Di19 PF05605.7 gi|336477234|ref|YP_004616375.1| - 0.11 12.6 0.9 1.6 8.9 0.1 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Rubredoxin PF00301.15 gi|336477234|ref|YP_004616375.1| - 3.4 7.5 6.7 2.2 8.2 0.9 2.8 3 0 0 3 3 3 0 Rubredoxin AAA_22 PF13401.1 gi|336477235|ref|YP_004616376.1| - 6.8e-05 23.0 3.1 0.0011 19.0 0.0 4.3 6 0 0 6 6 6 1 AAA domain AAA_16 PF13191.1 gi|336477235|ref|YP_004616376.1| - 0.0024 17.8 2.6 0.02 14.8 0.0 3.7 4 0 0 4 4 4 1 AAA ATPase domain AAA PF00004.24 gi|336477236|ref|YP_004616377.1| - 5.3e-09 36.3 0.0 7e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|336477236|ref|YP_004616377.1| - 1.3e-06 29.1 0.0 1.8e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336477236|ref|YP_004616377.1| - 7.1e-05 22.8 0.0 9.9e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|336477236|ref|YP_004616377.1| - 0.00011 21.4 0.0 0.00016 20.8 0.0 1.5 1 1 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|336477236|ref|YP_004616377.1| - 0.00014 21.7 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|336477236|ref|YP_004616377.1| - 0.00028 20.6 0.2 0.00031 20.5 0.2 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|336477236|ref|YP_004616377.1| - 0.00033 20.7 0.0 0.00055 20.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336477236|ref|YP_004616377.1| - 0.00083 19.6 0.3 0.0014 18.9 0.2 1.4 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|336477236|ref|YP_004616377.1| - 0.0048 16.5 0.0 0.0068 16.1 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|336477236|ref|YP_004616377.1| - 0.0056 16.5 0.2 0.0072 16.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|336477236|ref|YP_004616377.1| - 0.0058 16.3 0.0 0.01 15.4 0.0 1.6 1 1 0 1 1 1 1 NACHT domain Miro PF08477.8 gi|336477236|ref|YP_004616377.1| - 0.007 16.8 0.0 0.0096 16.4 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein TIP49 PF06068.8 gi|336477236|ref|YP_004616377.1| - 0.0082 14.9 0.0 0.0091 14.7 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|336477236|ref|YP_004616377.1| - 0.0084 15.0 0.2 0.013 14.4 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_15 PF13175.1 gi|336477236|ref|YP_004616377.1| - 0.013 14.5 3.1 0.019 14.0 2.2 1.3 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|336477236|ref|YP_004616377.1| - 0.018 13.9 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|336477236|ref|YP_004616377.1| - 0.027 14.0 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|336477236|ref|YP_004616377.1| - 0.03 13.7 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Gtr1_RagA PF04670.7 gi|336477236|ref|YP_004616377.1| - 0.056 12.5 0.1 0.083 12.0 0.1 1.3 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region IPT PF01745.11 gi|336477236|ref|YP_004616377.1| - 0.061 12.4 0.3 0.55 9.3 0.0 2.0 1 1 1 2 2 2 0 Isopentenyl transferase SMC_N PF02463.14 gi|336477236|ref|YP_004616377.1| - 0.062 12.5 0.0 0.072 12.3 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|336477236|ref|YP_004616377.1| - 0.07 11.9 0.4 0.084 11.7 0.2 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|336477236|ref|YP_004616377.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_2 PF03668.10 gi|336477236|ref|YP_004616377.1| - 0.083 11.9 0.1 0.099 11.6 0.0 1.1 1 0 0 1 1 1 0 P-loop ATPase protein family AAA_21 PF13304.1 gi|336477236|ref|YP_004616377.1| - 0.11 12.4 2.6 0.46 10.4 1.8 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|336477236|ref|YP_004616377.1| - 0.11 12.1 0.1 0.18 11.4 0.0 1.4 1 1 0 1 1 1 0 NTPase DUF258 PF03193.11 gi|336477236|ref|YP_004616377.1| - 0.13 11.3 0.1 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|336477236|ref|YP_004616377.1| - 0.14 11.8 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|336477236|ref|YP_004616377.1| - 0.35 11.1 2.9 0.58 10.4 0.1 2.2 2 1 0 2 2 2 0 AAA domain N6_N4_Mtase PF01555.13 gi|336477237|ref|YP_004616378.1| - 1.7e-10 40.7 0.0 6.1e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|336477237|ref|YP_004616378.1| - 6.7e-09 35.8 0.0 3.3e-08 33.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336477237|ref|YP_004616378.1| - 0.0054 16.3 0.1 0.21 11.1 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|336477237|ref|YP_004616378.1| - 0.013 15.0 0.0 0.27 10.7 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336477237|ref|YP_004616378.1| - 0.039 13.3 0.0 2.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF87 PF01935.12 gi|336477238|ref|YP_004616379.1| - 7.4e-26 91.3 0.1 3.2e-24 86.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|336477238|ref|YP_004616379.1| - 2.4e-11 43.6 0.0 7.9e-10 38.6 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain Zot PF05707.7 gi|336477238|ref|YP_004616379.1| - 0.01 15.3 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) Vip3A_N PF12495.3 gi|336477238|ref|YP_004616379.1| - 0.033 13.8 0.3 0.089 12.4 0.2 1.7 1 0 0 1 1 1 0 Vegetative insecticide protein 3A N terminal zf-ISL3 PF14690.1 gi|336477239|ref|YP_004616380.1| - 0.076 13.0 0.2 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3784 PF12650.2 gi|336477240|ref|YP_004616381.1| - 0.57 10.1 5.1 0.65 9.9 3.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) AHSA1 PF08327.6 gi|336477241|ref|YP_004616382.1| - 8.5e-12 45.2 0.2 1.1e-11 44.9 0.1 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.4 gi|336477241|ref|YP_004616382.1| - 0.00019 21.6 0.0 0.00028 21.0 0.0 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2963 PF11178.3 gi|336477241|ref|YP_004616382.1| - 0.055 12.9 0.1 0.092 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) Rho_Binding PF08912.6 gi|336477241|ref|YP_004616382.1| - 0.063 13.5 0.6 0.11 12.7 0.4 1.4 1 0 0 1 1 1 0 Rho Binding DUF2154 PF09922.4 gi|336477243|ref|YP_004616384.1| - 4.9e-14 51.9 0.8 7.2e-14 51.4 0.6 1.3 1 0 0 1 1 1 1 Cell wall-active antibiotics response protein (DUF2154) zf-C4_Topoisom PF01396.14 gi|336477244|ref|YP_004616385.1| - 0.0055 16.1 1.2 2.2 7.8 0.1 2.3 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger LIM PF00412.17 gi|336477244|ref|YP_004616385.1| - 0.024 14.7 0.6 0.041 13.9 0.4 1.5 1 1 0 1 1 1 0 LIM domain zf-C3HC4_3 PF13920.1 gi|336477244|ref|YP_004616385.1| - 0.033 13.8 2.5 0.062 12.9 1.8 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Tmpp129 PF10272.4 gi|336477244|ref|YP_004616385.1| - 0.055 12.1 0.4 0.066 11.9 0.3 1.0 1 0 0 1 1 1 0 Putative transmembrane protein precursor DnaJ_CXXCXGXG PF00684.14 gi|336477244|ref|YP_004616385.1| - 0.066 13.2 0.1 0.079 13.0 0.0 1.2 1 0 0 1 1 1 0 DnaJ central domain zinc-ribbons_6 PF07191.7 gi|336477244|ref|YP_004616385.1| - 0.071 12.9 1.8 0.2 11.4 1.3 1.7 1 1 0 1 1 1 0 zinc-ribbons IBR PF01485.16 gi|336477244|ref|YP_004616385.1| - 0.074 12.9 1.2 0.11 12.4 0.9 1.3 1 0 0 1 1 1 0 IBR domain DUF329 PF03884.9 gi|336477244|ref|YP_004616385.1| - 0.078 12.5 0.9 3.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zinc_ribbon_2 PF13240.1 gi|336477244|ref|YP_004616385.1| - 0.083 12.3 1.5 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain HECT_2 PF09814.4 gi|336477244|ref|YP_004616385.1| - 0.093 11.4 0.1 0.098 11.3 0.1 1.1 1 0 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Yippee-Mis18 PF03226.9 gi|336477244|ref|YP_004616385.1| - 0.1 12.6 0.1 0.14 12.1 0.1 1.3 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-C3HC4 PF00097.20 gi|336477244|ref|YP_004616385.1| - 0.11 12.1 2.2 0.25 11.0 1.5 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|336477244|ref|YP_004616385.1| - 0.13 12.0 4.0 1.3 8.7 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 GFA PF04828.9 gi|336477244|ref|YP_004616385.1| - 0.13 12.1 1.0 2.5 8.1 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|336477244|ref|YP_004616385.1| - 0.17 11.7 2.0 0.42 10.4 1.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|336477244|ref|YP_004616385.1| - 0.18 12.1 0.7 10 6.7 0.2 2.3 1 1 1 2 2 2 0 C2H2-type zinc finger Sgf11 PF08209.6 gi|336477244|ref|YP_004616385.1| - 0.21 10.8 2.5 0.66 9.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_3 PF14369.1 gi|336477244|ref|YP_004616385.1| - 0.22 11.5 3.6 7 6.7 0.1 2.2 1 1 1 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|336477244|ref|YP_004616385.1| - 0.24 10.6 2.9 1.3 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|336477244|ref|YP_004616385.1| - 0.29 10.2 3.6 0.51 9.4 2.6 1.5 1 1 0 1 1 1 0 Mu-like prophage protein Com Opy2 PF09463.5 gi|336477244|ref|YP_004616385.1| - 0.29 11.2 2.8 11 6.2 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DiS_P_DiS PF06750.8 gi|336477244|ref|YP_004616385.1| - 0.31 10.8 2.2 7.6 6.4 1.6 2.1 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-RING_2 PF13639.1 gi|336477244|ref|YP_004616385.1| - 0.36 10.6 2.6 0.72 9.7 1.8 1.5 1 1 0 1 1 1 0 Ring finger domain Integrase_Zn PF02022.14 gi|336477244|ref|YP_004616385.1| - 0.37 10.2 2.1 14 5.2 0.0 2.4 2 0 0 2 2 2 0 Integrase Zinc binding domain Zn_Tnp_IS1595 PF12760.2 gi|336477244|ref|YP_004616385.1| - 0.44 10.4 4.7 0.28 11.0 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_4 PF14570.1 gi|336477244|ref|YP_004616385.1| - 0.53 9.9 5.8 4.2 7.0 4.0 2.0 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain DUF3797 PF12677.2 gi|336477244|ref|YP_004616385.1| - 0.6 9.7 5.0 4 7.1 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-H2C2_2 PF13465.1 gi|336477244|ref|YP_004616385.1| - 0.61 10.4 0.1 0.61 10.4 0.1 2.5 3 0 0 3 3 2 0 Zinc-finger double domain Cys_rich_KTR PF14205.1 gi|336477244|ref|YP_004616385.1| - 1.1 8.7 3.9 1.9 7.9 2.7 1.5 1 1 0 1 1 1 0 Cysteine-rich KTR Zn-ribbon_8 PF09723.5 gi|336477244|ref|YP_004616385.1| - 1.6 8.7 5.3 45 4.1 3.8 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|336477244|ref|YP_004616385.1| - 4.4 7.0 6.8 33 4.2 4.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336477244|ref|YP_004616385.1| - 6.5 6.4 6.8 47 3.6 4.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Mis14 PF08641.7 gi|336477245|ref|YP_004616386.1| - 0.0014 18.6 0.0 0.0015 18.5 0.0 1.1 1 0 0 1 1 1 1 Kinetochore protein Mis14 like Enoyl_reductase PF12241.3 gi|336477245|ref|YP_004616386.1| - 0.021 13.7 0.1 0.023 13.6 0.0 1.1 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region IL4 PF00727.13 gi|336477245|ref|YP_004616386.1| - 0.053 13.3 0.1 0.068 13.0 0.1 1.2 1 0 0 1 1 1 0 Interleukin 4 Rho_Binding PF08912.6 gi|336477245|ref|YP_004616386.1| - 0.11 12.7 0.1 0.22 11.8 0.1 1.5 1 1 0 1 1 1 0 Rho Binding Crystall_2 PF09076.5 gi|336477245|ref|YP_004616386.1| - 0.13 12.0 0.1 0.26 11.0 0.1 1.5 1 0 0 1 1 1 0 Beta/Gamma crystallin PAS_9 PF13426.1 gi|336477247|ref|YP_004616388.1| - 5.7e-37 126.2 2.6 1.4e-12 47.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|336477247|ref|YP_004616388.1| - 1.4e-28 98.9 0.3 2.2e-10 40.3 0.0 3.6 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|336477247|ref|YP_004616388.1| - 2.5e-25 88.1 7.6 2.5e-25 88.1 5.3 2.2 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|336477247|ref|YP_004616388.1| - 3.6e-25 87.8 0.1 3.6e-19 68.6 0.1 3.8 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.1 gi|336477247|ref|YP_004616388.1| - 1.7e-20 74.0 0.0 3.4e-20 73.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|336477247|ref|YP_004616388.1| - 2.6e-17 62.8 0.0 3.6e-06 26.9 0.0 3.9 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|336477247|ref|YP_004616388.1| - 1.8e-12 46.9 0.0 6.6e-12 45.1 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|336477247|ref|YP_004616388.1| - 3.3e-10 39.4 0.0 0.0086 15.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain HWE_HK PF07536.9 gi|336477247|ref|YP_004616388.1| - 1.8e-08 34.6 1.4 3.4e-08 33.8 0.3 2.0 2 0 0 2 2 2 1 HWE histidine kinase GAF_3 PF13492.1 gi|336477247|ref|YP_004616388.1| - 1.4e-05 25.1 0.0 9.7e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.1 gi|336477247|ref|YP_004616388.1| - 0.00036 20.2 0.0 0.00081 19.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336477247|ref|YP_004616388.1| - 0.0028 17.3 0.5 0.0081 15.8 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sensor_TM1 PF13755.1 gi|336477247|ref|YP_004616388.1| - 0.003 17.0 0.0 0.0083 15.6 0.0 1.7 1 0 0 1 1 1 1 Sensor N-terminal transmembrane domain FAD_binding_4 PF01565.18 gi|336477248|ref|YP_004616389.1| - 2.8e-32 111.1 3.0 4.3e-32 110.4 2.1 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|336477248|ref|YP_004616389.1| - 4.3e-09 36.1 0.1 7.7e-09 35.3 0.1 1.4 1 0 0 1 1 1 1 Berberine and berberine like DUF1724 PF08350.5 gi|336477250|ref|YP_004616391.1| - 7.9e-13 47.7 0.0 1.6e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1043 PF06295.7 gi|336477250|ref|YP_004616391.1| - 0.0022 17.6 0.1 0.0041 16.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1043) UPF0118 PF01594.11 gi|336477251|ref|YP_004616392.1| - 7.4e-42 143.4 48.7 9.2e-42 143.1 33.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF4096 PF13340.1 gi|336477252|ref|YP_004616393.1| - 7.9e-20 70.4 0.0 8.6e-20 70.3 0.0 1.0 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) PKD PF00801.15 gi|336477253|ref|YP_004616394.1| - 1.2e-19 69.7 11.1 4.7e-18 64.6 4.3 2.3 2 0 0 2 2 2 2 PKD domain Cupredoxin_1 PF13473.1 gi|336477253|ref|YP_004616394.1| - 8.1e-12 44.9 0.0 3.1e-11 43.0 0.0 1.9 2 0 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|336477253|ref|YP_004616394.1| - 2.4e-08 34.1 0.8 1.3e-06 28.5 0.6 2.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF2154 PF09922.4 gi|336477254|ref|YP_004616395.1| - 2.5e-14 52.9 0.3 4e-14 52.2 0.2 1.3 1 0 0 1 1 1 1 Cell wall-active antibiotics response protein (DUF2154) UPF0259 PF06790.6 gi|336477255|ref|YP_004616396.1| - 0.0022 17.5 20.1 0.0022 17.5 13.9 3.0 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0259) OppC_N PF12911.2 gi|336477255|ref|YP_004616396.1| - 0.01 15.1 1.4 0.01 15.1 0.9 4.8 5 1 1 6 6 6 0 N-terminal TM domain of oligopeptide transport permease C DUF4013 PF13197.1 gi|336477255|ref|YP_004616396.1| - 0.084 12.2 49.8 0.016 14.5 13.6 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) Col_cuticle_N PF01484.12 gi|336477256|ref|YP_004616397.1| - 5.7 6.7 6.3 9.4 6.0 0.1 2.1 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain 3-dmu-9_3-mt PF06983.8 gi|336477257|ref|YP_004616398.1| - 5.3e-79 262.0 1.5 1.3e-40 138.3 0.1 2.2 2 0 0 2 2 2 2 3-demethylubiquinone-9 3-methyltransferase Glyoxalase_2 PF12681.2 gi|336477257|ref|YP_004616398.1| - 0.12 13.0 0.1 0.47 11.0 0.0 2.1 2 2 0 2 2 2 0 Glyoxalase-like domain LMSTEN PF07988.7 gi|336477257|ref|YP_004616398.1| - 0.33 10.2 1.9 20 4.6 0.0 2.5 2 0 0 2 2 2 0 LMSTEN motif Glug PF07581.7 gi|336477258|ref|YP_004616399.1| - 2.7e-35 118.1 103.7 1.3e-05 25.0 1.6 12.0 12 0 0 12 12 12 10 The GLUG motif DUF1724 PF08350.5 gi|336477259|ref|YP_004616400.1| - 7.4e-14 51.0 0.4 1.4e-13 50.0 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF947 PF06102.7 gi|336477259|ref|YP_004616400.1| - 0.048 13.4 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF947) Arch_flagellin PF01917.11 gi|336477260|ref|YP_004616401.1| - 2.1e-42 144.9 5.6 2.5e-42 144.6 3.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1049 PF06305.6 gi|336477260|ref|YP_004616401.1| - 0.12 11.9 0.7 0.2 11.1 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) Fer4 PF00037.22 gi|336477261|ref|YP_004616402.1| - 4.6e-15 54.5 20.8 1.5e-09 37.0 5.4 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336477261|ref|YP_004616402.1| - 2.3e-14 53.4 18.0 3.5e-11 43.3 7.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336477261|ref|YP_004616402.1| - 2.3e-12 46.1 19.3 3e-08 33.1 5.1 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336477261|ref|YP_004616402.1| - 4.2e-11 42.4 23.5 2.2e-07 30.5 8.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477261|ref|YP_004616402.1| - 3.3e-09 36.8 9.1 4.2e-09 36.5 6.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477261|ref|YP_004616402.1| - 4.7e-09 36.8 9.2 0.00019 22.1 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|336477261|ref|YP_004616402.1| - 7.2e-08 32.1 11.3 3e-07 30.1 7.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477261|ref|YP_004616402.1| - 2.2e-07 30.3 17.6 3.3e-05 23.5 4.3 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336477261|ref|YP_004616402.1| - 4.9e-06 26.7 15.9 0.002 18.5 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336477261|ref|YP_004616402.1| - 9.3e-06 25.5 8.5 0.0003 20.7 6.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|336477261|ref|YP_004616402.1| - 1.3e-05 24.9 2.8 1.7e-05 24.6 1.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336477261|ref|YP_004616402.1| - 2.1e-05 24.4 13.8 0.00016 21.7 2.9 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336477261|ref|YP_004616402.1| - 8.6e-05 23.0 18.9 0.023 15.2 13.1 3.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|336477261|ref|YP_004616402.1| - 0.00049 20.3 8.1 0.0037 17.5 0.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336477261|ref|YP_004616402.1| - 0.0034 17.7 13.1 0.0063 16.9 3.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336477261|ref|YP_004616402.1| - 0.0079 16.5 18.0 0.34 11.3 0.9 3.1 2 2 2 4 4 4 3 4Fe-4S single cluster domain CBM_14 PF01607.19 gi|336477261|ref|YP_004616402.1| - 0.03 14.2 5.0 0.047 13.6 0.3 2.0 1 1 1 2 2 2 0 Chitin binding Peritrophin-A domain RLI PF04068.10 gi|336477261|ref|YP_004616402.1| - 0.033 13.7 9.2 0.59 9.7 0.6 3.8 2 2 0 2 2 2 0 Possible Fer4-like domain in RNase L inhibitor, RLI Nop10p PF04135.7 gi|336477261|ref|YP_004616402.1| - 0.42 10.3 2.1 0.78 9.5 0.0 2.0 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Fer4_19 PF06902.6 gi|336477261|ref|YP_004616402.1| - 0.93 9.3 7.4 27 4.6 5.2 3.1 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_20 PF14691.1 gi|336477261|ref|YP_004616402.1| - 2.3 7.8 6.0 5.3 6.7 0.9 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF326 PF03860.11 gi|336477261|ref|YP_004616402.1| - 3.2 7.7 8.3 14 5.7 0.0 3.1 2 1 0 2 2 2 0 Domain of Unknown Function (DUF326) TM2 PF05154.11 gi|336477262|ref|YP_004616403.1| - 0.0012 19.0 11.5 0.038 14.2 8.0 2.0 1 1 0 1 1 1 1 TM2 domain Virul_fac_BrkB PF03631.10 gi|336477263|ref|YP_004616404.1| - 1.6e-48 165.3 26.3 1.8e-48 165.2 18.2 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Metallophos_2 PF12850.2 gi|336477264|ref|YP_004616405.1| - 1e-19 70.9 0.0 1.6e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336477264|ref|YP_004616405.1| - 2.4e-17 63.0 0.1 4.5e-17 62.1 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|336477264|ref|YP_004616405.1| - 6.4e-08 32.0 0.1 0.00037 19.7 0.0 2.9 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF4010 PF13194.1 gi|336477265|ref|YP_004616406.1| - 4.4e-46 156.8 18.6 4.4e-46 156.8 12.9 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|336477265|ref|YP_004616406.1| - 1.6e-10 40.9 10.2 1.6e-10 40.9 7.1 3.1 3 2 0 3 3 3 1 MgtC family TRM PF02005.11 gi|336477266|ref|YP_004616407.1| - 3.6e-106 355.2 0.0 4.2e-106 355.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DZR PF12773.2 gi|336477266|ref|YP_004616407.1| - 0.026 14.3 0.9 0.059 13.1 0.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Methyltransf_16 PF10294.4 gi|336477266|ref|YP_004616407.1| - 0.029 13.8 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Zn_Tnp_IS1595 PF12760.2 gi|336477266|ref|YP_004616407.1| - 0.054 13.3 0.5 0.099 12.4 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF3195 PF11424.3 gi|336477266|ref|YP_004616407.1| - 0.071 13.3 0.0 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3195) HTH_27 PF13463.1 gi|336477267|ref|YP_004616408.1| - 0.0016 18.7 0.1 0.076 13.3 0.1 2.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|336477267|ref|YP_004616408.1| - 0.002 17.7 0.1 0.0042 16.7 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|336477267|ref|YP_004616408.1| - 0.0024 17.7 0.1 0.01 15.7 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|336477267|ref|YP_004616408.1| - 0.0032 17.2 0.4 0.013 15.3 0.2 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix DUF2513 PF10711.4 gi|336477267|ref|YP_004616408.1| - 0.0074 16.3 0.1 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) MarR_2 PF12802.2 gi|336477267|ref|YP_004616408.1| - 0.013 15.1 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|336477267|ref|YP_004616408.1| - 0.035 14.1 0.5 1.6 8.7 0.1 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336477267|ref|YP_004616408.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|336477267|ref|YP_004616408.1| - 0.12 12.0 0.0 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2110 PF09883.4 gi|336477268|ref|YP_004616409.1| - 3.8e-72 242.5 0.5 4.3e-72 242.3 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) LAGLIDADG_WhiA PF14527.1 gi|336477268|ref|YP_004616409.1| - 0.00048 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 WhiA LAGLIDADG-like domain V4R PF02830.13 gi|336477269|ref|YP_004616410.1| - 5.7e-17 61.3 3.5 5.7e-17 61.3 2.4 1.6 2 0 0 2 2 1 1 V4R domain HTH_5 PF01022.15 gi|336477269|ref|YP_004616410.1| - 1.3e-11 44.0 0.0 2.2e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|336477269|ref|YP_004616410.1| - 1.4e-07 31.0 0.0 2.4e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336477269|ref|YP_004616410.1| - 0.00011 21.6 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|336477269|ref|YP_004616410.1| - 0.00047 20.0 0.0 0.00086 19.2 0.0 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein TrmB PF01978.14 gi|336477269|ref|YP_004616410.1| - 0.0011 18.6 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336477269|ref|YP_004616410.1| - 0.0035 17.1 0.0 0.0063 16.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|336477269|ref|YP_004616410.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|336477269|ref|YP_004616410.1| - 0.02 14.5 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|336477269|ref|YP_004616410.1| - 0.038 13.3 0.0 0.083 12.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|336477269|ref|YP_004616410.1| - 0.099 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix ArsR PF09824.4 gi|336477269|ref|YP_004616410.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 ArsR transcriptional regulator Met_10 PF02475.11 gi|336477270|ref|YP_004616411.1| - 8.1e-66 221.4 0.1 1.1e-65 221.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|336477270|ref|YP_004616411.1| - 5.3e-06 26.4 0.0 8.3e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336477270|ref|YP_004616411.1| - 1.2e-05 24.8 0.0 2.6e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|336477270|ref|YP_004616411.1| - 0.00011 22.7 0.0 0.00022 21.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|336477270|ref|YP_004616411.1| - 0.00041 19.3 0.0 0.00057 18.9 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_4 PF02390.12 gi|336477270|ref|YP_004616411.1| - 0.0057 15.7 0.0 0.0099 14.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|336477270|ref|YP_004616411.1| - 0.0073 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|336477270|ref|YP_004616411.1| - 0.0085 15.6 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|336477270|ref|YP_004616411.1| - 0.024 13.3 0.2 0.051 12.2 0.0 1.5 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|336477270|ref|YP_004616411.1| - 0.03 13.4 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|336477270|ref|YP_004616411.1| - 0.048 12.6 0.0 0.081 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|336477270|ref|YP_004616411.1| - 0.062 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_21 PF05050.7 gi|336477270|ref|YP_004616411.1| - 0.092 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase FkbM domain MCH PF02289.11 gi|336477271|ref|YP_004616412.1| - 1.6e-154 513.5 1.2 1.8e-154 513.4 0.8 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Fer4_6 PF12837.2 gi|336477272|ref|YP_004616413.1| - 2.5e-07 30.2 8.6 0.0009 19.0 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|336477272|ref|YP_004616413.1| - 2.6e-07 29.9 8.0 0.00042 19.7 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336477272|ref|YP_004616413.1| - 1.7e-06 27.7 8.0 3e-06 26.9 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477272|ref|YP_004616413.1| - 2.5e-05 24.5 7.5 4.4e-05 23.7 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477272|ref|YP_004616413.1| - 3e-05 24.6 11.2 0.0018 18.9 7.8 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|336477272|ref|YP_004616413.1| - 0.00012 22.2 7.9 0.00024 21.3 5.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477272|ref|YP_004616413.1| - 0.0002 21.3 1.1 0.031 14.3 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336477272|ref|YP_004616413.1| - 0.00027 21.3 1.8 0.07 13.5 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336477272|ref|YP_004616413.1| - 0.00052 20.3 10.1 0.27 11.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336477272|ref|YP_004616413.1| - 0.00058 19.9 10.3 0.18 12.2 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477272|ref|YP_004616413.1| - 0.0052 16.6 11.0 0.042 13.7 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477272|ref|YP_004616413.1| - 0.0053 16.6 9.1 0.4 10.7 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336477272|ref|YP_004616413.1| - 0.085 13.2 6.7 2.2 8.6 1.2 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336477272|ref|YP_004616413.1| - 3.8 7.9 9.0 4.4 7.7 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiM PF01891.11 gi|336477273|ref|YP_004616414.1| - 5.4e-49 166.5 22.9 6.1e-49 166.4 15.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region HAD_2 PF13419.1 gi|336477274|ref|YP_004616415.1| - 2.1e-25 89.9 0.1 2.6e-25 89.6 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336477274|ref|YP_004616415.1| - 2e-15 57.7 0.1 1.1e-14 55.4 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336477274|ref|YP_004616415.1| - 2.9e-10 39.7 0.0 6e-10 38.6 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|336477274|ref|YP_004616415.1| - 0.0017 18.5 0.5 0.0032 17.6 0.3 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|336477274|ref|YP_004616415.1| - 0.1 12.1 0.0 3.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Acid Phosphatase MFS_1 PF07690.11 gi|336477275|ref|YP_004616416.1| - 1.6e-44 152.1 36.8 1.6e-44 152.1 25.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|336477275|ref|YP_004616416.1| - 1.3e-07 30.6 8.6 1.3e-07 30.6 6.0 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|336477275|ref|YP_004616416.1| - 0.02 13.3 43.2 0.0062 14.9 6.3 3.4 1 1 1 3 3 3 0 MFS/sugar transport protein Usp PF00582.21 gi|336477276|ref|YP_004616417.1| - 7.7e-36 123.3 0.3 9.2e-36 123.1 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF500 PF04366.7 gi|336477276|ref|YP_004616417.1| - 0.013 14.9 0.1 0.017 14.5 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF500) ETF PF01012.16 gi|336477276|ref|YP_004616417.1| - 0.056 13.1 0.3 0.49 10.0 0.2 2.0 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Phage_NinH PF06322.6 gi|336477276|ref|YP_004616417.1| - 0.15 11.7 1.1 4.8 6.8 0.0 2.3 1 1 1 2 2 2 0 Phage NinH protein HEM4 PF02602.10 gi|336477277|ref|YP_004616418.1| - 4.5e-43 147.1 0.0 5.1e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HGTP_anticodon2 PF12745.2 gi|336477277|ref|YP_004616418.1| - 0.055 12.6 0.0 0.14 11.3 0.0 1.6 2 0 0 2 2 2 0 Anticodon binding domain of tRNAs Nitro_FeMo-Co PF02579.12 gi|336477277|ref|YP_004616418.1| - 0.078 13.0 0.0 18 5.5 0.0 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Death PF00531.17 gi|336477277|ref|YP_004616418.1| - 0.081 12.7 0.0 1.2 8.8 0.0 2.5 3 0 0 3 3 3 0 Death domain TP_methylase PF00590.15 gi|336477278|ref|YP_004616419.1| - 2.8e-53 180.7 0.0 3.2e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1699 PF08004.6 gi|336477281|ref|YP_004616422.1| - 8.7e-65 216.1 0.8 9.8e-65 215.9 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DnaB_2 PF07261.6 gi|336477281|ref|YP_004616422.1| - 0.079 12.5 0.3 0.18 11.4 0.2 1.5 1 0 0 1 1 1 0 Replication initiation and membrane attachment Histidinol_dh PF00815.15 gi|336477282|ref|YP_004616423.1| - 5.8e-170 565.3 1.3 6.7e-170 565.1 0.9 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase H-kinase_dim PF02895.9 gi|336477282|ref|YP_004616423.1| - 0.061 13.6 0.1 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain DEAD PF00270.24 gi|336477283|ref|YP_004616424.1| - 1.3e-27 96.3 0.1 9.1e-27 93.6 0.0 2.5 4 0 0 4 4 4 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336477283|ref|YP_004616424.1| - 1.4e-09 37.6 0.0 4.8e-09 35.9 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|336477283|ref|YP_004616424.1| - 5.7e-08 32.8 0.3 2.5e-07 30.7 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|336477283|ref|YP_004616424.1| - 7.8e-06 25.8 0.0 2.6e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|336477283|ref|YP_004616424.1| - 6.1e-05 22.4 0.0 0.00021 20.7 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Sec63 PF02889.11 gi|336477283|ref|YP_004616424.1| - 0.0098 15.1 0.1 0.015 14.5 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain HHH_2 PF12826.2 gi|336477283|ref|YP_004616424.1| - 0.072 12.9 0.0 0.25 11.2 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|336477283|ref|YP_004616424.1| - 0.09 12.7 0.0 0.3 11.0 0.0 1.9 1 0 0 1 1 1 0 Pathogenicity locus HHH PF00633.18 gi|336477283|ref|YP_004616424.1| - 0.12 12.1 0.0 0.36 10.6 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif MS_channel PF00924.13 gi|336477284|ref|YP_004616425.1| - 7.5e-42 142.9 1.0 7.5e-42 142.9 0.7 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Hydrolase_3 PF08282.7 gi|336477285|ref|YP_004616426.1| - 2.3e-17 63.4 0.1 1.1e-16 61.1 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|336477285|ref|YP_004616426.1| - 3e-08 33.2 0.0 0.0012 18.1 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|336477285|ref|YP_004616426.1| - 8.4e-06 26.0 2.1 0.0018 18.5 1.5 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|336477285|ref|YP_004616426.1| - 2.6e-05 24.0 0.0 5.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336477285|ref|YP_004616426.1| - 0.07 13.5 1.3 12 6.2 0.9 3.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Pec_lyase PF09492.5 gi|336477287|ref|YP_004616428.1| - 5.4e-05 22.5 0.1 0.0041 16.3 0.0 2.4 2 0 0 2 2 2 2 Pectic acid lyase Prenyltrans_2 PF13249.1 gi|336477287|ref|YP_004616428.1| - 0.00011 22.5 0.0 0.00058 20.2 0.0 2.3 1 1 0 1 1 1 1 Prenyltransferase-like Glyco_hydro_15 PF00723.16 gi|336477287|ref|YP_004616428.1| - 0.0005 18.7 0.0 0.027 13.0 0.0 2.8 2 1 0 2 2 2 1 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|336477287|ref|YP_004616428.1| - 0.00078 19.4 0.0 0.75 9.8 0.0 2.9 1 1 1 2 2 2 2 Prenyltransferase-like DUF608 PF04685.8 gi|336477287|ref|YP_004616428.1| - 0.0091 14.7 0.0 0.02 13.6 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF608 PALP PF00291.20 gi|336477288|ref|YP_004616429.1| - 7e-34 117.4 0.0 9.1e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phos_pyr_kin PF08543.7 gi|336477289|ref|YP_004616430.1| - 2e-78 262.9 0.0 2.8e-78 262.4 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|336477289|ref|YP_004616430.1| - 2e-62 209.5 0.4 2.9e-62 209.0 0.3 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|336477289|ref|YP_004616430.1| - 5.6e-14 51.9 0.0 9.4e-14 51.2 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|336477289|ref|YP_004616430.1| - 0.00044 19.5 0.1 0.00079 18.6 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Alpha_L_fucos PF01120.12 gi|336477289|ref|YP_004616430.1| - 0.11 11.3 0.0 0.27 10.1 0.0 1.5 2 0 0 2 2 2 0 Alpha-L-fucosidase LSM PF01423.17 gi|336477290|ref|YP_004616431.1| - 5.6e-22 77.0 0.2 6.1e-22 76.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain Ribosomal_L37e PF01907.14 gi|336477291|ref|YP_004616432.1| - 8.8e-23 79.8 13.9 9.4e-23 79.7 9.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|336477291|ref|YP_004616432.1| - 0.0048 16.6 1.3 0.0072 16.1 0.9 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|336477291|ref|YP_004616432.1| - 0.097 12.1 3.6 0.094 12.2 2.5 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.14 gi|336477291|ref|YP_004616432.1| - 0.15 11.7 1.0 0.16 11.6 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|336477291|ref|YP_004616432.1| - 0.17 11.1 5.6 0.064 12.4 1.8 1.9 2 1 1 3 3 3 0 zinc-ribbon domain Elf1 PF05129.8 gi|336477291|ref|YP_004616432.1| - 0.32 10.7 3.8 0.8 9.4 0.3 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DNA_RNApol_7kD PF03604.8 gi|336477291|ref|YP_004616432.1| - 0.95 8.9 6.9 2.3 7.7 0.6 2.4 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|336477291|ref|YP_004616432.1| - 1.2 9.1 5.5 5.1 7.1 0.1 2.3 1 1 2 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336477291|ref|YP_004616432.1| - 3.9 7.2 7.3 2.4 7.9 3.9 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|336477291|ref|YP_004616432.1| - 7.5 6.4 10.6 77 3.2 7.3 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336477291|ref|YP_004616432.1| - 8.4 6.1 7.2 14 5.4 1.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336477291|ref|YP_004616432.1| - 9 5.9 7.4 12 5.5 1.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATase_2 PF00310.16 gi|336477292|ref|YP_004616433.1| - 1.9e-27 95.9 0.0 4.3e-19 68.4 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|336477292|ref|YP_004616433.1| - 2.3e-26 91.9 0.0 1.2e-25 89.6 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|336477292|ref|YP_004616433.1| - 1.4e-25 89.7 0.0 1.2e-24 86.7 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|336477292|ref|YP_004616433.1| - 1.6e-12 46.6 0.0 9.1e-11 40.9 0.0 2.1 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|336477292|ref|YP_004616433.1| - 1e-10 41.4 0.1 2.7e-10 40.0 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_24 PF13412.1 gi|336477293|ref|YP_004616434.1| - 1.6e-06 27.3 0.1 3.1e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF1887 PF09002.6 gi|336477293|ref|YP_004616434.1| - 3.3e-05 22.4 0.1 3.8e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) HTH_5 PF01022.15 gi|336477293|ref|YP_004616434.1| - 4.4e-05 23.0 0.1 0.00011 21.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336477293|ref|YP_004616434.1| - 0.00015 21.3 0.0 0.00036 20.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|336477293|ref|YP_004616434.1| - 0.00016 21.2 0.0 0.0005 19.7 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|336477293|ref|YP_004616434.1| - 0.00019 21.3 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|336477293|ref|YP_004616434.1| - 0.0049 16.4 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336477293|ref|YP_004616434.1| - 0.0056 16.4 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|336477293|ref|YP_004616434.1| - 0.0066 16.2 0.3 0.014 15.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Cas_Cas02710 PF09670.5 gi|336477293|ref|YP_004616434.1| - 0.0086 14.7 0.1 0.011 14.4 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF3860 PF12976.2 gi|336477293|ref|YP_004616434.1| - 0.0095 15.7 0.1 0.024 14.4 0.1 1.7 1 1 0 2 2 2 1 Domain of Unknown Function with PDB structure (DUF3860) Cas_APE2256 PF09651.5 gi|336477293|ref|YP_004616434.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) Fe_dep_repress PF01325.14 gi|336477293|ref|YP_004616434.1| - 0.031 14.2 0.0 0.077 12.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.6 gi|336477293|ref|YP_004616434.1| - 0.037 14.4 0.2 0.064 13.6 0.1 1.5 1 1 0 1 1 1 0 Replication protein A C terminal MarR_2 PF12802.2 gi|336477293|ref|YP_004616434.1| - 0.05 13.2 0.0 0.099 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|336477293|ref|YP_004616434.1| - 0.059 13.2 0.1 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|336477293|ref|YP_004616434.1| - 0.084 12.1 0.8 0.18 11.1 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.1 gi|336477293|ref|YP_004616434.1| - 0.099 12.6 0.0 0.27 11.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Thi4 PF01946.12 gi|336477294|ref|YP_004616435.1| - 2.5e-85 285.2 1.5 2.9e-85 285.0 1.1 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|336477294|ref|YP_004616435.1| - 4.6e-07 29.2 0.2 6.7e-07 28.7 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336477294|ref|YP_004616435.1| - 1.7e-05 24.7 0.1 4.4e-05 23.4 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|336477294|ref|YP_004616435.1| - 3e-05 23.0 1.5 0.038 12.8 0.2 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336477294|ref|YP_004616435.1| - 0.0001 22.2 0.1 0.00012 22.0 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336477294|ref|YP_004616435.1| - 0.0019 17.1 1.5 0.011 14.6 0.3 2.0 1 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|336477294|ref|YP_004616435.1| - 0.0055 15.8 0.0 0.0087 15.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|336477294|ref|YP_004616435.1| - 0.011 14.1 1.1 0.017 13.6 0.8 1.3 1 0 0 1 1 1 0 HI0933-like protein Bclx_interact PF08945.5 gi|336477294|ref|YP_004616435.1| - 0.024 14.1 0.1 0.061 12.8 0.0 1.7 2 0 0 2 2 2 0 Bcl-x interacting, BH3 domain Aconitase PF00330.15 gi|336477295|ref|YP_004616436.1| - 5.6e-90 302.0 4.4 4e-58 197.0 0.8 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|336477295|ref|YP_004616436.1| - 9.3e-05 21.1 0.0 0.00014 20.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|336477296|ref|YP_004616437.1| - 7.2e-18 64.9 0.0 9.4e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|336477296|ref|YP_004616437.1| - 3.8e-05 23.2 0.0 0.0027 17.1 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus AAA PF00004.24 gi|336477297|ref|YP_004616438.1| - 9e-38 129.4 0.0 1.8e-37 128.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|336477297|ref|YP_004616438.1| - 1.5e-07 31.4 0.0 2.3e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|336477297|ref|YP_004616438.1| - 2.4e-07 31.5 0.3 6.3e-07 30.2 0.1 1.9 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|336477297|ref|YP_004616438.1| - 5.2e-07 28.9 0.0 3.5e-06 26.2 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|336477297|ref|YP_004616438.1| - 4e-06 26.9 0.5 0.0014 18.7 0.0 3.0 1 1 1 3 3 3 1 AAA domain TIP49 PF06068.8 gi|336477297|ref|YP_004616438.1| - 7.8e-06 24.8 0.0 2.2e-05 23.3 0.0 1.7 1 1 0 2 2 2 1 TIP49 C-terminus DUF815 PF05673.8 gi|336477297|ref|YP_004616438.1| - 2.1e-05 23.5 0.0 0.00099 18.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|336477297|ref|YP_004616438.1| - 2.3e-05 23.9 0.0 6.3e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|336477297|ref|YP_004616438.1| - 0.00012 21.7 0.0 0.00091 18.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|336477297|ref|YP_004616438.1| - 0.00019 21.3 0.0 0.00046 20.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336477297|ref|YP_004616438.1| - 0.0016 18.4 0.0 0.0046 16.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|336477297|ref|YP_004616438.1| - 0.0017 18.0 1.9 0.0053 16.4 0.0 2.5 2 1 1 3 3 3 1 Bacterial dnaA protein AAA_16 PF13191.1 gi|336477297|ref|YP_004616438.1| - 0.0028 17.6 0.0 0.011 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|336477297|ref|YP_004616438.1| - 0.0032 16.9 0.6 0.029 13.7 0.4 2.2 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|336477297|ref|YP_004616438.1| - 0.0064 15.6 0.0 0.013 14.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|336477297|ref|YP_004616438.1| - 0.0077 16.5 0.0 0.021 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|336477297|ref|YP_004616438.1| - 0.011 15.2 0.0 0.034 13.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|336477297|ref|YP_004616438.1| - 0.019 15.1 0.0 0.048 13.8 0.0 1.8 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|336477297|ref|YP_004616438.1| - 0.019 14.6 0.1 0.057 13.0 0.0 1.8 1 1 1 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|336477297|ref|YP_004616438.1| - 0.028 14.4 0.0 0.068 13.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|336477297|ref|YP_004616438.1| - 0.039 13.3 0.7 0.17 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|336477297|ref|YP_004616438.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain IPT PF01745.11 gi|336477297|ref|YP_004616438.1| - 0.062 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.11 gi|336477297|ref|YP_004616438.1| - 0.093 11.9 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Spin-Ssty PF02513.12 gi|336477298|ref|YP_004616439.1| - 0.09 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Spin/Ssty Family Lactamase_B_2 PF12706.2 gi|336477299|ref|YP_004616440.1| - 1.3e-31 109.6 0.0 1.7e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336477299|ref|YP_004616440.1| - 2.5e-14 53.3 0.0 1.2e-12 47.9 0.0 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|336477299|ref|YP_004616440.1| - 6.6e-05 22.3 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.10 gi|336477299|ref|YP_004616440.1| - 0.086 11.7 0.0 0.23 10.3 0.0 1.6 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II Ribosomal_S8e PF01201.17 gi|336477300|ref|YP_004616441.1| - 1.1e-38 132.3 7.5 1.2e-38 132.2 5.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AsnC_trans_reg PF01037.16 gi|336477301|ref|YP_004616442.1| - 9.2e-16 57.3 0.2 1.9e-15 56.2 0.1 1.6 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|336477301|ref|YP_004616442.1| - 1.2e-11 43.8 0.5 6e-11 41.5 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336477301|ref|YP_004616442.1| - 2.5e-09 36.5 0.4 1.8e-08 33.7 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336477301|ref|YP_004616442.1| - 0.00029 20.5 0.0 0.0015 18.2 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|336477301|ref|YP_004616442.1| - 0.0005 19.6 1.0 0.0009 18.8 0.2 1.8 2 0 0 2 2 2 1 HTH domain Sigma70_r4_2 PF08281.7 gi|336477301|ref|YP_004616442.1| - 0.0007 19.0 0.1 0.0041 16.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|336477301|ref|YP_004616442.1| - 0.0023 17.4 1.1 0.0031 16.9 0.4 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|336477301|ref|YP_004616442.1| - 0.0051 16.4 0.0 0.0093 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336477301|ref|YP_004616442.1| - 0.0063 16.2 0.1 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF1670 PF07900.6 gi|336477301|ref|YP_004616442.1| - 0.01 15.0 0.4 0.018 14.2 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1670) FaeA PF04703.7 gi|336477301|ref|YP_004616442.1| - 0.04 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein DUF2250 PF10007.4 gi|336477301|ref|YP_004616442.1| - 0.04 13.8 0.1 0.086 12.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|336477301|ref|YP_004616442.1| - 0.056 12.5 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_DeoR PF08220.7 gi|336477301|ref|YP_004616442.1| - 0.057 12.9 0.3 0.12 11.9 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Phage_rep_O PF04492.8 gi|336477301|ref|YP_004616442.1| - 0.086 13.0 0.5 0.72 10.0 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage replication protein O HTH_Tnp_ISL3 PF13542.1 gi|336477301|ref|YP_004616442.1| - 0.11 11.7 0.0 0.88 8.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.5 gi|336477301|ref|YP_004616442.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|336477301|ref|YP_004616442.1| - 0.14 12.3 0.3 0.9 9.6 0.0 2.3 2 1 1 3 3 3 0 Transcriptional regulator Aminotran_1_2 PF00155.16 gi|336477302|ref|YP_004616443.1| - 1.1e-68 231.8 0.0 1.3e-68 231.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336477302|ref|YP_004616443.1| - 1.3e-16 60.5 0.2 2e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336477302|ref|YP_004616443.1| - 6.8e-09 35.2 0.0 1.1e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336477302|ref|YP_004616443.1| - 7.3e-09 34.8 0.0 1.6e-08 33.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|336477302|ref|YP_004616443.1| - 3.1e-06 25.7 0.1 4.8e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|336477302|ref|YP_004616443.1| - 0.065 11.7 0.1 0.095 11.2 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF3483 PF11982.3 gi|336477303|ref|YP_004616444.1| - 0.54 9.5 3.1 0.62 9.3 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3483) Serinc PF03348.10 gi|336477303|ref|YP_004616444.1| - 2.1 6.9 7.4 2.4 6.7 5.1 1.0 1 0 0 1 1 1 0 Serine incorporator (Serinc) DUF2207 PF09972.4 gi|336477303|ref|YP_004616444.1| - 9 4.7 10.4 12 4.3 7.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) KaiC PF06745.8 gi|336477306|ref|YP_004616447.1| - 3.3e-49 167.0 2.0 4.1e-49 166.7 1.4 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|336477306|ref|YP_004616447.1| - 5.2e-10 38.2 0.2 6.6e-10 37.9 0.2 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|336477306|ref|YP_004616447.1| - 1.7e-05 24.3 0.0 4e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|336477306|ref|YP_004616447.1| - 0.0072 15.3 0.0 0.0087 15.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|336477306|ref|YP_004616447.1| - 0.0073 15.2 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|336477306|ref|YP_004616447.1| - 0.024 14.7 0.0 0.049 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|336477306|ref|YP_004616447.1| - 0.29 11.3 3.7 1.5 9.0 2.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Glycogen_syn PF05693.8 gi|336477307|ref|YP_004616448.1| - 1.9e-13 49.5 0.8 4.2e-07 28.6 0.0 2.4 2 1 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|336477307|ref|YP_004616448.1| - 0.0062 15.9 1.7 0.052 12.9 0.0 3.1 4 0 0 4 4 4 1 Glycosyl transferases group 1 GalP_UDP_transf PF01087.17 gi|336477308|ref|YP_004616449.1| - 3e-17 63.2 0.1 9.6e-15 55.0 0.0 2.2 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain HIT PF01230.18 gi|336477308|ref|YP_004616449.1| - 8.8e-07 29.3 0.0 0.045 14.2 0.0 2.3 2 0 0 2 2 2 2 HIT domain GalP_UDP_tr_C PF02744.12 gi|336477308|ref|YP_004616449.1| - 4.2e-05 23.1 0.0 6.4e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|336477308|ref|YP_004616449.1| - 0.00026 21.2 0.0 0.078 13.2 0.0 2.4 2 0 0 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding Glycos_transf_1 PF00534.15 gi|336477309|ref|YP_004616450.1| - 3.3e-30 104.7 0.0 6.3e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336477309|ref|YP_004616450.1| - 9.3e-19 68.1 0.0 1.5e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|336477309|ref|YP_004616450.1| - 5.5e-16 58.9 0.1 1.5e-15 57.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|336477309|ref|YP_004616450.1| - 1.2e-14 54.3 0.7 5e-12 45.8 0.5 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|336477309|ref|YP_004616450.1| - 1.7e-14 53.9 0.0 3.3e-14 52.9 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|336477309|ref|YP_004616450.1| - 9.1e-12 44.9 0.0 2e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|336477309|ref|YP_004616450.1| - 2.8e-05 24.2 0.0 5.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 PPARgamma_N PF12577.3 gi|336477309|ref|YP_004616450.1| - 0.029 14.6 0.2 1.1 9.6 0.1 2.3 2 0 0 2 2 2 0 PPAR gamma N-terminal region GDE_C PF06202.9 gi|336477310|ref|YP_004616451.1| - 2.4e-132 441.1 0.1 3.1e-132 440.7 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|336477310|ref|YP_004616451.1| - 5.4e-70 235.0 0.1 7.4e-70 234.6 0.1 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|336477310|ref|YP_004616451.1| - 0.00055 18.7 0.3 0.0012 17.6 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|336477310|ref|YP_004616451.1| - 0.0018 16.7 0.2 1.1 7.5 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase Bac_rhamnosid PF05592.6 gi|336477310|ref|YP_004616451.1| - 0.002 16.4 0.0 0.0028 15.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase DUF2582 PF10771.4 gi|336477311|ref|YP_004616452.1| - 2e-16 59.5 0.0 2.2e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) CorA PF01544.13 gi|336477312|ref|YP_004616453.1| - 1.7e-82 276.7 10.6 2.2e-82 276.4 7.3 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Vip3A_N PF12495.3 gi|336477312|ref|YP_004616453.1| - 0.16 11.5 4.1 0.38 10.4 0.2 2.4 1 1 0 2 2 2 0 Vegetative insecticide protein 3A N terminal DUF432 PF04254.8 gi|336477313|ref|YP_004616454.1| - 3.4e-42 143.2 0.2 5.7e-42 142.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|336477314|ref|YP_004616455.1| - 5e-53 179.4 5.5 7.2e-53 178.9 3.8 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Colicin_D PF11429.3 gi|336477314|ref|YP_004616455.1| - 0.11 12.6 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Colicin D TctB PF07331.6 gi|336477314|ref|YP_004616455.1| - 0.79 9.3 10.0 1.2 8.7 6.9 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Glyco_hydro_57 PF03065.10 gi|336477315|ref|YP_004616456.1| - 1.3e-44 152.6 0.6 1.7e-43 148.9 0.4 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_hydro_57 PF03065.10 gi|336477316|ref|YP_004616457.1| - 6.5e-69 232.5 2.8 7.6e-69 232.3 0.2 2.1 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|336477316|ref|YP_004616457.1| - 0.0055 16.3 0.0 0.0097 15.5 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase V4R PF02830.13 gi|336477317|ref|YP_004616458.1| - 2.7e-14 52.7 0.1 4.6e-14 52.0 0.1 1.4 1 0 0 1 1 1 1 V4R domain Glyco_hydro_15 PF00723.16 gi|336477318|ref|YP_004616459.1| - 2.6e-17 62.5 0.0 2e-09 36.5 0.1 3.2 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Prenyltrans_2 PF13249.1 gi|336477318|ref|YP_004616459.1| - 0.017 15.5 0.2 0.51 10.7 0.1 2.8 2 1 1 3 3 3 0 Prenyltransferase-like ADK_lid PF05191.9 gi|336477319|ref|YP_004616460.1| - 0.017 14.8 1.6 0.017 14.8 1.1 2.0 1 1 1 2 2 2 0 Adenylate kinase, active site lid Cript PF10235.4 gi|336477319|ref|YP_004616460.1| - 0.048 14.0 2.7 0.075 13.3 1.9 1.4 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT FpoO PF10621.4 gi|336477319|ref|YP_004616460.1| - 0.14 12.2 1.0 0.17 11.9 0.7 1.4 1 1 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO C1_2 PF03107.11 gi|336477319|ref|YP_004616460.1| - 0.14 12.3 2.3 1.8 8.7 0.1 2.1 2 0 0 2 2 2 0 C1 domain zf-C4_Topoisom PF01396.14 gi|336477319|ref|YP_004616460.1| - 0.14 11.6 0.8 0.14 11.6 0.6 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.1 gi|336477319|ref|YP_004616460.1| - 0.19 11.5 4.5 0.33 10.6 0.3 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_3 PF07649.7 gi|336477319|ref|YP_004616460.1| - 0.2 11.7 2.4 4.3 7.4 0.1 2.1 2 0 0 2 2 2 0 C1-like domain Kazal_1 PF00050.16 gi|336477319|ref|YP_004616460.1| - 0.2 11.6 2.0 0.68 10.0 0.3 1.9 1 1 1 2 2 2 0 Kazal-type serine protease inhibitor domain zf-dskA_traR PF01258.12 gi|336477319|ref|YP_004616460.1| - 0.43 10.3 2.5 2.4 7.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF4428 PF14471.1 gi|336477319|ref|YP_004616460.1| - 0.49 10.1 5.8 0.25 11.1 1.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) FeoC PF09012.5 gi|336477319|ref|YP_004616460.1| - 0.61 9.8 3.3 0.66 9.7 2.3 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator NTP_transf_3 PF12804.2 gi|336477320|ref|YP_004616461.1| - 3.6e-15 56.4 0.0 4.4e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336477320|ref|YP_004616461.1| - 1.1e-07 31.5 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|336477320|ref|YP_004616461.1| - 7.4e-06 25.7 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|336477320|ref|YP_004616461.1| - 0.021 14.1 0.0 0.034 13.4 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase CofC PF01983.11 gi|336477320|ref|YP_004616461.1| - 0.034 13.1 0.2 0.06 12.3 0.1 1.6 1 1 0 1 1 1 0 Guanylyl transferase CofC like DUF2064 PF09837.4 gi|336477320|ref|YP_004616461.1| - 0.035 13.7 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF3764 PF12594.3 gi|336477320|ref|YP_004616461.1| - 0.084 12.6 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) SASP PF00269.15 gi|336477320|ref|YP_004616461.1| - 2.4 8.0 4.4 0.8 9.6 0.3 2.0 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type CobS PF02654.10 gi|336477321|ref|YP_004616462.1| - 3.1e-50 170.9 15.3 1.5e-49 168.7 10.6 1.8 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase PgpA PF04608.8 gi|336477322|ref|YP_004616463.1| - 6.2e-10 39.0 0.0 8.5e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobD_Cbib PF03186.8 gi|336477323|ref|YP_004616464.1| - 1.1e-95 320.1 0.1 1.3e-95 319.9 0.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Aminotran_1_2 PF00155.16 gi|336477324|ref|YP_004616465.1| - 9.5e-47 159.6 0.0 1.3e-46 159.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|336477324|ref|YP_004616465.1| - 3e-31 106.9 4.4 7.1e-31 105.7 3.0 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Cys_Met_Meta_PP PF01053.15 gi|336477324|ref|YP_004616465.1| - 0.023 12.9 0.0 0.032 12.5 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF2521 PF10730.4 gi|336477324|ref|YP_004616465.1| - 0.04 13.7 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2521) NTP_transf_3 PF12804.2 gi|336477325|ref|YP_004616466.1| - 1.9e-09 37.8 0.0 2.3e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|336477325|ref|YP_004616466.1| - 0.00038 20.1 0.0 0.00085 19.0 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|336477325|ref|YP_004616466.1| - 0.0056 16.2 0.0 0.0064 16.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Phage_connect_1 PF05135.8 gi|336477326|ref|YP_004616467.1| - 0.055 13.6 4.7 0.36 11.0 3.3 2.0 1 1 0 1 1 1 0 Phage gp6-like head-tail connector protein tRNA-synt_His PF13393.1 gi|336477327|ref|YP_004616468.1| - 4.3e-67 226.3 0.0 5.6e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|336477327|ref|YP_004616468.1| - 1e-26 93.5 0.3 2.8e-26 92.1 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336477327|ref|YP_004616468.1| - 6.1e-13 48.5 0.1 1.1e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|336477327|ref|YP_004616468.1| - 2.7e-07 29.6 0.3 0.0099 14.6 0.0 3.2 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|336477327|ref|YP_004616468.1| - 0.0037 16.4 0.0 0.019 14.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Peptidase_M36 PF02128.10 gi|336477327|ref|YP_004616468.1| - 0.035 12.9 0.0 0.049 12.4 0.0 1.2 1 0 0 1 1 1 0 Fungalysin metallopeptidase (M36) DUF1886 PF09171.5 gi|336477328|ref|YP_004616469.1| - 0.11 11.4 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) JSRP PF15312.1 gi|336477328|ref|YP_004616469.1| - 0.13 12.2 0.1 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Junctional sarcoplasmic reticulum protein SUI1 PF01253.17 gi|336477329|ref|YP_004616470.1| - 0.042 13.6 0.0 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor SUI1 DUF3600 PF12207.3 gi|336477330|ref|YP_004616471.1| - 0.039 13.4 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3600) Ribosomal_S13_N PF08069.7 gi|336477332|ref|YP_004616473.1| - 1.5e-25 88.7 1.5 2.3e-25 88.1 0.5 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|336477332|ref|YP_004616473.1| - 5.9e-19 67.6 0.7 8.1e-19 67.1 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DHH PF01368.15 gi|336477333|ref|YP_004616474.1| - 3.7e-18 65.5 1.0 5.8e-18 64.9 0.2 1.7 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|336477333|ref|YP_004616474.1| - 8.7e-15 54.1 0.6 8.7e-15 54.1 0.4 2.3 3 0 0 3 3 3 1 DHHA1 domain EIIA-man PF03610.11 gi|336477333|ref|YP_004616474.1| - 0.02 14.9 0.4 0.26 11.3 0.0 2.7 3 0 0 3 3 3 0 PTS system fructose IIA component Pox_polyA_pol_N PF12630.2 gi|336477333|ref|YP_004616474.1| - 0.038 14.0 0.1 0.15 12.1 0.1 2.0 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain Pcc1 PF09341.5 gi|336477334|ref|YP_004616475.1| - 0.00039 20.3 0.4 0.00052 20.0 0.3 1.3 1 1 0 1 1 1 1 Transcription factor Pcc1 GatB_Yqey PF02637.13 gi|336477334|ref|YP_004616475.1| - 0.039 13.6 0.6 0.054 13.2 0.5 1.4 1 1 0 1 1 1 0 GatB domain Cation_efflux PF01545.16 gi|336477335|ref|YP_004616476.1| - 3.9e-59 200.0 8.5 4.4e-59 199.8 5.9 1.0 1 0 0 1 1 1 1 Cation efflux family UXS1_N PF11803.3 gi|336477335|ref|YP_004616476.1| - 0.1 12.3 0.1 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal DUF418 PF04235.7 gi|336477335|ref|YP_004616476.1| - 0.15 11.7 0.8 1.4 8.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF418) tRNA-synt_2b PF00587.20 gi|336477337|ref|YP_004616478.1| - 1.6e-12 47.3 0.0 2.8e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF2380 PF09533.5 gi|336477337|ref|YP_004616478.1| - 0.027 13.9 0.0 0.1 12.0 0.0 1.9 2 0 0 2 2 2 0 Predicted lipoprotein of unknown function (DUF2380) Ribosomal_S3Ae PF01015.13 gi|336477338|ref|YP_004616479.1| - 9.3e-71 237.1 5.0 1e-70 237.0 3.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF2584 PF10763.4 gi|336477338|ref|YP_004616479.1| - 0.053 13.3 0.6 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2584) Lar_restr_allev PF14354.1 gi|336477339|ref|YP_004616480.1| - 0.00036 20.7 0.2 0.00045 20.4 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|336477339|ref|YP_004616480.1| - 0.0012 18.0 0.4 0.96 8.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336477339|ref|YP_004616480.1| - 0.0015 18.3 0.3 0.0021 17.8 0.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Baculo_ME53 PF06061.6 gi|336477339|ref|YP_004616480.1| - 0.0057 15.6 0.4 0.006 15.6 0.3 1.0 1 0 0 1 1 1 1 Baculoviridae ME53 TF_Zn_Ribbon PF08271.7 gi|336477339|ref|YP_004616480.1| - 0.0065 15.7 3.2 0.0065 15.7 2.2 2.3 2 1 0 2 2 2 1 TFIIB zinc-binding RecR PF02132.10 gi|336477339|ref|YP_004616480.1| - 0.011 15.1 0.9 3.4 7.1 0.1 2.2 2 0 0 2 2 2 0 RecR protein zf-ISL3 PF14690.1 gi|336477339|ref|YP_004616480.1| - 0.014 15.3 0.5 3 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|336477339|ref|YP_004616480.1| - 0.025 14.2 2.9 2.4 7.8 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.5 gi|336477339|ref|YP_004616480.1| - 0.032 13.7 4.7 0.23 10.9 3.3 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|336477339|ref|YP_004616480.1| - 0.044 13.4 1.5 7.1 6.4 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|336477339|ref|YP_004616480.1| - 0.05 13.5 2.6 7 6.6 0.6 2.4 2 1 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|336477339|ref|YP_004616480.1| - 0.07 13.0 1.6 4.2 7.3 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin DUF2387 PF09526.5 gi|336477339|ref|YP_004616480.1| - 0.074 12.9 0.2 0.11 12.3 0.1 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-NADH-PPase PF09297.6 gi|336477339|ref|YP_004616480.1| - 0.082 12.4 1.2 4 7.0 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Desulfoferrod_N PF06397.7 gi|336477339|ref|YP_004616480.1| - 0.091 12.1 4.0 1 8.7 0.5 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RNA_POL_M_15KD PF02150.11 gi|336477339|ref|YP_004616480.1| - 0.11 12.2 2.6 0.32 10.6 1.8 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2459 PF09601.5 gi|336477339|ref|YP_004616480.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2459) OrfB_Zn_ribbon PF07282.6 gi|336477339|ref|YP_004616480.1| - 0.13 11.9 0.6 0.27 10.9 0.3 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|336477339|ref|YP_004616480.1| - 0.14 12.0 0.9 0.49 10.2 0.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|336477339|ref|YP_004616480.1| - 0.52 10.0 4.2 3.1 7.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PADR1 PF08063.7 gi|336477339|ref|YP_004616480.1| - 0.58 9.5 3.2 2.8 7.3 2.3 1.8 1 1 1 2 2 2 0 PADR1 (NUC008) domain Rad50_zn_hook PF04423.9 gi|336477339|ref|YP_004616480.1| - 0.82 9.1 4.6 2.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif Prim_Zn_Ribbon PF08273.7 gi|336477339|ref|YP_004616480.1| - 1.2 9.3 4.5 4.6 7.3 3.1 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|336477339|ref|YP_004616480.1| - 1.4 8.5 5.1 10 5.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|336477339|ref|YP_004616480.1| - 3.3 7.4 7.3 0.79 9.3 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF1610 PF07754.6 gi|336477339|ref|YP_004616480.1| - 8.5 6.6 9.2 15 5.8 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF523 PF04463.7 gi|336477340|ref|YP_004616481.1| - 2.7e-34 117.9 0.0 5.1e-34 117.0 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|336477340|ref|YP_004616481.1| - 4.1e-10 39.5 0.0 6.4e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Thioredoxin PF00085.15 gi|336477341|ref|YP_004616482.1| - 1.5e-20 72.8 0.2 1.8e-20 72.5 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336477341|ref|YP_004616482.1| - 1.5e-07 31.6 0.7 1.6e-06 28.2 0.5 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|336477341|ref|YP_004616482.1| - 0.00046 19.8 0.2 0.00052 19.6 0.1 1.3 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|336477341|ref|YP_004616482.1| - 0.0011 19.0 0.1 0.0022 18.0 0.1 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|336477341|ref|YP_004616482.1| - 0.0063 16.2 0.0 0.0096 15.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain DUF2847 PF11009.3 gi|336477341|ref|YP_004616482.1| - 0.0071 15.9 0.2 0.013 15.1 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2847) Redoxin PF08534.5 gi|336477341|ref|YP_004616482.1| - 0.015 14.8 0.1 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Redoxin Thioredoxin_7 PF13899.1 gi|336477341|ref|YP_004616482.1| - 0.02 14.9 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_6 PF13848.1 gi|336477341|ref|YP_004616482.1| - 0.023 14.4 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain TraF PF13728.1 gi|336477341|ref|YP_004616482.1| - 0.059 12.8 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein DIM1 PF02966.11 gi|336477341|ref|YP_004616482.1| - 0.064 12.7 0.0 0.084 12.3 0.0 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_4 PF13462.1 gi|336477341|ref|YP_004616482.1| - 0.094 12.7 1.3 0.23 11.4 0.9 1.7 1 1 0 1 1 1 0 Thioredoxin DSBA PF01323.15 gi|336477341|ref|YP_004616482.1| - 0.23 11.0 1.6 0.38 10.2 1.1 1.4 1 1 0 1 1 1 0 DSBA-like thioredoxin domain tRNA-synt_1c PF00749.16 gi|336477343|ref|YP_004616484.1| - 7.3e-62 208.8 0.0 9.1e-62 208.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|336477343|ref|YP_004616484.1| - 2.3e-25 89.2 0.0 4.6e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Rrf2 PF02082.15 gi|336477344|ref|YP_004616485.1| - 0.00026 21.0 0.0 0.00035 20.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|336477344|ref|YP_004616485.1| - 0.00035 19.8 0.0 0.00054 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336477344|ref|YP_004616485.1| - 0.0017 18.0 0.1 0.003 17.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|336477344|ref|YP_004616485.1| - 0.003 17.2 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|336477344|ref|YP_004616485.1| - 0.01 15.6 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|336477344|ref|YP_004616485.1| - 0.012 15.2 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MerR PF00376.18 gi|336477344|ref|YP_004616485.1| - 0.023 14.2 0.0 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein RNA_pol_Rpc34 PF05158.7 gi|336477344|ref|YP_004616485.1| - 0.051 12.7 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Phage_rep_org_N PF09681.5 gi|336477344|ref|YP_004616485.1| - 0.061 12.9 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.1 gi|336477344|ref|YP_004616485.1| - 0.07 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain RepL PF05732.6 gi|336477344|ref|YP_004616485.1| - 0.074 12.2 0.0 0.088 12.0 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF2513 PF10711.4 gi|336477344|ref|YP_004616485.1| - 0.097 12.7 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_DeoR PF08220.7 gi|336477344|ref|YP_004616485.1| - 0.16 11.5 0.3 0.35 10.4 0.0 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain FAA_hydrolase PF01557.13 gi|336477345|ref|YP_004616486.1| - 2.2e-68 229.9 0.0 2.7e-68 229.6 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Usp PF00582.21 gi|336477346|ref|YP_004616487.1| - 5.5e-32 110.8 0.1 6.3e-32 110.6 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family ABC_sub_bind PF04392.7 gi|336477346|ref|YP_004616487.1| - 0.0078 15.2 0.4 0.013 14.5 0.3 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein DUF1628 PF07790.6 gi|336477348|ref|YP_004616489.1| - 1.8e-23 83.0 4.3 3.5e-23 82.1 3.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF3798 PF12683.2 gi|336477349|ref|YP_004616490.1| - 0.058 12.4 0.0 0.065 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) IF2_N PF04760.10 gi|336477349|ref|YP_004616490.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region zf-Tim10_DDP PF02953.10 gi|336477350|ref|YP_004616491.1| - 0.03 13.6 1.3 0.054 12.7 0.9 1.4 1 0 0 1 1 1 0 Tim10/DDP family zinc finger HTH_29 PF13551.1 gi|336477351|ref|YP_004616492.1| - 3.6e-17 62.5 0.0 4.8e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|336477351|ref|YP_004616492.1| - 4.3e-09 37.0 0.0 7.4e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.1 gi|336477351|ref|YP_004616492.1| - 3.8e-08 32.7 0.0 7.5e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|336477351|ref|YP_004616492.1| - 4.1e-08 32.6 0.0 1.1e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336477351|ref|YP_004616492.1| - 0.00025 20.9 0.3 0.00062 19.7 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.1 gi|336477351|ref|YP_004616492.1| - 0.013 15.8 0.0 0.019 15.3 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Integrase_1 PF12835.2 gi|336477351|ref|YP_004616492.1| - 0.016 14.9 0.1 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 Integrase HTH_7 PF02796.10 gi|336477351|ref|YP_004616492.1| - 0.035 13.9 0.1 5.5 6.9 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF2551 PF10826.3 gi|336477351|ref|YP_004616492.1| - 0.066 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) ChW PF07538.6 gi|336477351|ref|YP_004616492.1| - 0.29 10.7 2.2 0.51 9.8 1.5 1.5 1 0 0 1 1 1 0 Clostridial hydrophobic W Abhydrolase_6 PF12697.2 gi|336477352|ref|YP_004616493.1| - 8.8e-39 133.7 0.0 1e-38 133.5 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336477352|ref|YP_004616493.1| - 9e-27 94.1 0.4 2.2e-25 89.5 0.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336477352|ref|YP_004616493.1| - 3.1e-16 59.4 0.0 2.2e-15 56.6 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|336477352|ref|YP_004616493.1| - 1.3e-07 30.4 0.0 1.6e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 Ndr family FSH1 PF03959.8 gi|336477352|ref|YP_004616493.1| - 3.1e-05 23.5 0.1 0.003 17.0 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Hydrolase_4 PF12146.3 gi|336477352|ref|YP_004616493.1| - 0.00011 21.9 0.1 0.0046 16.7 0.0 2.3 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|336477352|ref|YP_004616493.1| - 0.0021 17.8 0.0 0.29 11.0 0.0 2.3 2 0 0 2 2 2 1 TAP-like protein DLH PF01738.13 gi|336477352|ref|YP_004616493.1| - 0.0031 16.8 0.0 0.0056 15.9 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|336477352|ref|YP_004616493.1| - 0.0064 15.9 0.3 1.3 8.4 0.1 2.5 2 1 0 2 2 2 2 Phospholipase/Carboxylesterase DUF927 PF06048.6 gi|336477353|ref|YP_004616494.1| - 3.6e-57 193.8 0.0 6.3e-57 193.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF927) T2SE PF00437.15 gi|336477353|ref|YP_004616494.1| - 0.13 11.1 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein N6_Mtase PF02384.11 gi|336477354|ref|YP_004616495.1| - 4.2e-124 413.6 0.0 6e-124 413.1 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|336477354|ref|YP_004616495.1| - 1.7e-27 96.4 0.7 1.7e-27 96.4 0.5 2.0 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|336477354|ref|YP_004616495.1| - 5.6e-09 36.0 0.0 1.2e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336477354|ref|YP_004616495.1| - 6.7e-05 22.5 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|336477354|ref|YP_004616495.1| - 0.033 14.5 0.0 0.087 13.1 0.0 1.7 1 0 0 1 1 1 0 Eco57I restriction-modification methylase MTS PF05175.9 gi|336477354|ref|YP_004616495.1| - 0.046 13.1 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|336477354|ref|YP_004616495.1| - 0.09 12.1 0.0 0.22 10.8 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|336477354|ref|YP_004616495.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methylase_S PF01420.14 gi|336477355|ref|YP_004616496.1| - 6.9e-45 153.0 10.6 1e-22 80.8 3.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF3387 PF11867.3 gi|336477357|ref|YP_004616498.1| - 9.6e-113 376.5 16.0 9.6e-113 376.5 11.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3387) HSDR_N PF04313.9 gi|336477357|ref|YP_004616498.1| - 4.2e-38 131.0 0.2 4.2e-38 131.0 0.1 2.8 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|336477357|ref|YP_004616498.1| - 1.5e-16 60.7 0.0 1.5e-16 60.7 0.0 2.7 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|336477357|ref|YP_004616498.1| - 0.0029 17.7 0.5 0.1 12.7 0.0 3.3 3 0 0 3 3 3 1 AAA domain Helicase_C PF00271.26 gi|336477357|ref|YP_004616498.1| - 0.044 13.6 0.0 0.21 11.4 0.0 2.2 2 0 0 2 2 2 0 Helicase conserved C-terminal domain VRR_NUC PF08774.6 gi|336477357|ref|YP_004616498.1| - 0.059 13.4 0.0 0.33 10.9 0.0 2.3 3 0 0 3 3 3 0 VRR-NUC domain DUF2479 PF10651.4 gi|336477358|ref|YP_004616499.1| - 0.027 13.9 0.1 0.051 13.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2479) Transglut_core PF01841.14 gi|336477358|ref|YP_004616499.1| - 0.085 13.0 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 Transglutaminase-like superfamily ChitinaseA_N PF08329.5 gi|336477359|ref|YP_004616500.1| - 0.004 16.9 0.0 0.0092 15.7 0.0 1.6 1 0 0 1 1 1 1 Chitinase A, N-terminal domain S-layer PF07752.6 gi|336477360|ref|YP_004616501.1| - 2.4e-201 666.0 90.0 1.5e-71 240.6 3.6 7.7 7 3 1 8 8 8 5 S-layer protein Beta_helix PF13229.1 gi|336477360|ref|YP_004616501.1| - 4.2e-40 137.0 167.5 1.9e-15 56.9 25.0 7.9 5 1 5 10 10 10 6 Right handed beta helix region NosD PF05048.8 gi|336477360|ref|YP_004616501.1| - 1.6e-39 135.4 179.8 7.3e-26 90.7 31.0 8.0 6 1 3 9 9 9 4 Periplasmic copper-binding protein (NosD) fn3 PF00041.16 gi|336477360|ref|YP_004616501.1| - 0.0031 17.5 1.2 0.014 15.5 0.8 2.1 1 0 0 1 1 1 1 Fibronectin type III domain YagB_YeeU_YfjZ PF06154.6 gi|336477360|ref|YP_004616501.1| - 0.068 13.4 0.0 0.24 11.6 0.0 1.9 1 0 0 1 1 1 0 YagB/YeeU/YfjZ family Phage_integrase PF00589.17 gi|336477361|ref|YP_004616502.1| - 4.1e-10 39.5 0.0 2.9e-09 36.8 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.17 gi|336477362|ref|YP_004616503.1| - 2.3e-17 63.2 0.1 2.6e-15 56.5 0.0 2.2 2 0 0 2 2 2 2 Phage integrase family A2L_zn_ribbon PF08792.5 gi|336477362|ref|YP_004616503.1| - 0.0094 15.3 1.0 3.8 7.0 0.0 2.5 2 0 0 2 2 2 2 A2L zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|336477362|ref|YP_004616503.1| - 0.015 14.8 0.2 0.057 13.0 0.2 2.0 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336477362|ref|YP_004616503.1| - 0.033 13.8 0.2 0.13 11.9 0.2 2.0 1 0 0 1 1 1 0 zinc-ribbon domain DUF1628 PF07790.6 gi|336477363|ref|YP_004616504.1| - 1.2e-21 77.1 1.9 2.1e-21 76.4 1.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4097 PF13349.1 gi|336477363|ref|YP_004616504.1| - 0.096 12.2 1.1 0.13 11.7 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) PocR PF10114.4 gi|336477367|ref|YP_004616508.1| - 1.4e-60 203.3 0.0 2.6e-60 202.5 0.0 1.5 1 0 0 1 1 1 1 Sensory domain found in PocR HATPase_c PF02518.21 gi|336477367|ref|YP_004616508.1| - 1.4e-34 118.1 0.3 4.1e-34 116.6 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336477367|ref|YP_004616508.1| - 2.1e-29 101.9 0.2 1.2e-19 70.6 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|336477367|ref|YP_004616508.1| - 5.9e-22 77.7 0.0 4.7e-13 49.1 0.0 2.4 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|336477367|ref|YP_004616508.1| - 7.8e-21 73.8 0.6 3.5e-20 71.7 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|336477367|ref|YP_004616508.1| - 4.2e-20 71.6 0.2 5.6e-09 35.9 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|336477367|ref|YP_004616508.1| - 6.2e-16 58.1 0.0 4.1e-13 49.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336477367|ref|YP_004616508.1| - 1.4e-06 27.9 0.0 4.6e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|336477367|ref|YP_004616508.1| - 6.7e-06 25.7 0.1 1.7e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|336477367|ref|YP_004616508.1| - 0.002 17.7 2.4 0.0045 16.6 0.2 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|336477367|ref|YP_004616508.1| - 0.03 14.3 0.0 0.96 9.4 0.0 3.2 2 1 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.1 gi|336477367|ref|YP_004616508.1| - 0.077 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|336477368|ref|YP_004616509.1| - 9e-05 22.7 0.0 0.00011 22.5 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336477368|ref|YP_004616509.1| - 0.00016 21.6 0.0 0.00023 21.1 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|336477368|ref|YP_004616509.1| - 0.00075 19.2 0.0 0.00088 19.0 0.0 1.2 1 0 0 1 1 1 1 PAS domain dCMP_cyt_deam_1 PF00383.17 gi|336477370|ref|YP_004616511.1| - 2.8e-23 81.5 0.0 4.1e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|336477370|ref|YP_004616511.1| - 0.0028 17.4 0.2 0.0056 16.5 0.1 1.4 1 1 0 1 1 1 1 Bd3614-like deaminase Eclosion PF04736.7 gi|336477370|ref|YP_004616511.1| - 0.02 14.3 1.2 1.5 8.2 0.1 2.4 1 1 1 2 2 2 0 Eclosion hormone APOBEC_N PF08210.6 gi|336477370|ref|YP_004616511.1| - 0.031 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 APOBEC-like N-terminal domain XOO_2897-deam PF14440.1 gi|336477370|ref|YP_004616511.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.5 2 0 0 2 2 2 0 Xanthomonas XOO_2897-like deaminase Nitroreductase PF00881.19 gi|336477371|ref|YP_004616512.1| - 1.3e-37 129.1 0.0 1.5e-37 128.9 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family CbiK PF06180.6 gi|336477371|ref|YP_004616512.1| - 0.018 14.1 0.0 0.02 14.0 0.0 1.1 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) TM1586_NiRdase PF14512.1 gi|336477371|ref|YP_004616512.1| - 0.02 14.0 1.0 0.64 9.1 0.1 2.8 1 1 1 2 2 2 0 Putative TM nitroreductase SPOR PF05036.8 gi|336477371|ref|YP_004616512.1| - 0.066 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Sporulation related domain Pirin PF02678.11 gi|336477372|ref|YP_004616513.1| - 1.7e-33 114.6 1.2 4.1e-33 113.4 0.4 1.8 2 0 0 2 2 2 1 Pirin Cupin_2 PF07883.6 gi|336477372|ref|YP_004616513.1| - 2e-09 36.8 0.9 3.2e-08 32.9 0.3 2.5 2 1 0 2 2 2 1 Cupin domain Pirin_C PF05726.8 gi|336477372|ref|YP_004616513.1| - 0.013 15.5 0.1 0.2 11.7 0.0 2.1 2 0 0 2 2 2 0 Pirin C-terminal cupin domain Crystall_2 PF09076.5 gi|336477372|ref|YP_004616513.1| - 0.13 12.0 0.2 3.8 7.3 0.1 2.7 3 0 0 3 3 3 0 Beta/Gamma crystallin DUF61 PF01886.11 gi|336477373|ref|YP_004616514.1| - 2.8e-19 69.2 0.0 3.3e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 PLDc_N PF13396.1 gi|336477374|ref|YP_004616515.1| - 4.9e-14 51.7 1.5 4.9e-14 51.7 1.0 2.4 3 0 0 3 3 3 1 Phospholipase_D-nuclease N-terminal TMEM138 PF14935.1 gi|336477374|ref|YP_004616515.1| - 0.016 15.5 4.4 0.02 15.2 3.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 138 FixQ PF05545.6 gi|336477374|ref|YP_004616515.1| - 0.03 13.9 0.9 0.03 13.9 0.6 3.1 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ HlyIII PF03006.15 gi|336477374|ref|YP_004616515.1| - 0.031 13.6 5.6 0.036 13.4 3.9 1.0 1 0 0 1 1 1 0 Haemolysin-III related DUF2029 PF09594.5 gi|336477374|ref|YP_004616515.1| - 0.042 13.3 4.0 0.11 12.0 3.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2029) Tmemb_161AB PF10268.4 gi|336477374|ref|YP_004616515.1| - 0.065 11.7 4.6 0.075 11.5 3.2 1.0 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB DUF1496 PF07383.7 gi|336477374|ref|YP_004616515.1| - 0.11 11.7 0.1 0.18 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1496) EcsB PF05975.7 gi|336477374|ref|YP_004616515.1| - 0.12 10.7 12.0 0.16 10.4 8.3 1.0 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF4181 PF13789.1 gi|336477374|ref|YP_004616515.1| - 0.35 10.8 11.5 7.9 6.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4181) MerC PF03203.9 gi|336477374|ref|YP_004616515.1| - 0.48 10.7 5.0 0.6 10.4 3.5 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein DUF1980 PF09323.5 gi|336477374|ref|YP_004616515.1| - 1.4 8.6 14.1 2.9 7.6 9.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1980) NfeD PF01957.13 gi|336477374|ref|YP_004616515.1| - 2.7 8.1 7.4 11 6.1 5.3 1.8 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Sigma_reg_N PF13800.1 gi|336477374|ref|YP_004616515.1| - 4.7 7.3 14.7 3.1 7.9 0.1 3.0 1 1 2 3 3 3 0 Sigma factor regulator N-terminal DUF4131 PF13567.1 gi|336477374|ref|YP_004616515.1| - 6.5 6.1 10.7 0.51 9.7 3.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Acyl_transf_3 PF01757.17 gi|336477374|ref|YP_004616515.1| - 7.6 5.2 15.0 9.4 4.9 0.5 1.6 1 1 0 1 1 1 0 Acyltransferase family GPI2 PF06432.6 gi|336477374|ref|YP_004616515.1| - 8 5.7 8.3 13 5.0 5.8 1.3 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase PASTA PF03793.14 gi|336477376|ref|YP_004616517.1| - 1.8e-29 101.1 5.6 4e-15 55.1 0.4 3.5 4 0 0 4 4 4 2 PASTA domain MscS_porin PF12795.2 gi|336477376|ref|YP_004616517.1| - 0.001 18.4 12.4 0.0014 17.9 8.6 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain Leu_zip PF15294.1 gi|336477376|ref|YP_004616517.1| - 0.0025 16.9 13.1 0.0042 16.2 9.1 1.3 1 0 0 1 1 1 1 Leucine zipper Exonuc_VII_L PF02601.10 gi|336477376|ref|YP_004616517.1| - 0.0039 16.4 3.2 0.0053 15.9 2.2 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit Reo_sigmaC PF04582.7 gi|336477376|ref|YP_004616517.1| - 0.011 14.9 7.7 0.017 14.2 5.0 1.6 1 1 1 2 2 2 0 Reovirus sigma C capsid protein APG6 PF04111.7 gi|336477376|ref|YP_004616517.1| - 0.018 14.1 12.3 0.03 13.3 8.6 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Laminin_I PF06008.9 gi|336477376|ref|YP_004616517.1| - 0.047 12.9 11.0 0.19 11.0 7.7 1.9 2 0 0 2 2 2 0 Laminin Domain I AAA_27 PF13514.1 gi|336477376|ref|YP_004616517.1| - 0.071 10.7 9.9 0.087 10.4 6.9 1.0 1 0 0 1 1 1 0 AAA domain DUF972 PF06156.8 gi|336477376|ref|YP_004616517.1| - 0.24 11.7 11.8 0.48 10.7 7.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Atg14 PF10186.4 gi|336477376|ref|YP_004616517.1| - 0.24 10.3 16.2 0.23 10.3 10.4 1.6 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 CENP-F_leu_zip PF10473.4 gi|336477376|ref|YP_004616517.1| - 0.26 11.1 19.0 0.84 9.4 13.2 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.1 gi|336477376|ref|YP_004616517.1| - 0.36 9.9 18.8 0.32 10.1 11.6 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|336477376|ref|YP_004616517.1| - 0.49 9.9 15.5 0.65 9.5 10.2 1.5 1 1 0 1 1 1 0 IncA protein MCPsignal PF00015.16 gi|336477376|ref|YP_004616517.1| - 0.57 9.6 8.0 1 8.8 5.5 1.4 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Lge1 PF11488.3 gi|336477376|ref|YP_004616517.1| - 0.64 10.2 10.7 1.6 8.9 7.0 2.2 2 1 0 2 2 1 0 Transcriptional regulatory protein LGE1 DUF730 PF05325.6 gi|336477376|ref|YP_004616517.1| - 0.69 9.7 4.1 1.1 9.0 2.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF730) DUF3373 PF11853.3 gi|336477376|ref|YP_004616517.1| - 0.69 8.3 5.0 1.1 7.7 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) V_ATPase_I PF01496.14 gi|336477376|ref|YP_004616517.1| - 0.72 7.6 7.4 0.81 7.4 5.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|336477376|ref|YP_004616517.1| - 0.93 9.0 13.4 0.42 10.1 3.6 3.3 1 1 2 3 3 3 0 Septum formation initiator Osmo_CC PF08946.5 gi|336477376|ref|YP_004616517.1| - 1 9.4 10.4 3.7 7.6 0.8 3.0 1 1 1 2 2 2 0 Osmosensory transporter coiled coil DUF2422 PF10337.4 gi|336477376|ref|YP_004616517.1| - 1.4 7.6 6.7 1.8 7.2 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) Vfa1 PF08432.5 gi|336477376|ref|YP_004616517.1| - 2.4 8.1 10.9 4.3 7.3 7.5 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.14 gi|336477376|ref|YP_004616517.1| - 4 6.9 12.0 7.8 6.0 7.3 2.0 1 1 1 2 2 2 0 GrpE Prefoldin_2 PF01920.15 gi|336477376|ref|YP_004616517.1| - 6.3 6.6 18.2 0.8 9.4 4.4 2.9 1 1 1 2 2 2 0 Prefoldin subunit Nitroreductase PF00881.19 gi|336477379|ref|YP_004616520.1| - 8.8e-32 110.1 0.0 1.2e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family PBP_like_2 PF12849.2 gi|336477380|ref|YP_004616521.1| - 3.2e-45 154.7 0.3 6.2e-45 153.8 0.2 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|336477380|ref|YP_004616521.1| - 1.9e-17 62.8 0.0 2.3e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|336477380|ref|YP_004616521.1| - 6.2e-08 32.5 0.0 9e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|336477380|ref|YP_004616521.1| - 0.012 14.9 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|336477380|ref|YP_004616521.1| - 0.021 14.5 0.0 0.089 12.5 0.0 1.8 1 1 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF1724 PF08350.5 gi|336477381|ref|YP_004616522.1| - 1.4e-20 72.6 0.1 2.7e-20 71.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|336477381|ref|YP_004616522.1| - 6.1e-05 22.7 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336477381|ref|YP_004616522.1| - 0.0013 18.3 0.2 0.0025 17.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.5 gi|336477381|ref|YP_004616522.1| - 0.0077 15.8 0.3 0.021 14.4 0.2 1.7 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.1 gi|336477381|ref|YP_004616522.1| - 0.013 15.8 0.0 0.04 14.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HemN_C PF06969.11 gi|336477381|ref|YP_004616522.1| - 0.015 15.3 0.1 1.3 9.1 0.0 2.5 2 0 0 2 2 2 0 HemN C-terminal domain HTH_34 PF13601.1 gi|336477381|ref|YP_004616522.1| - 0.057 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1884 PF08967.5 gi|336477381|ref|YP_004616522.1| - 0.081 12.9 0.2 0.26 11.3 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) ABC-3 PF00950.12 gi|336477382|ref|YP_004616523.1| - 2.2e-65 220.4 44.3 2.5e-65 220.3 30.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|336477382|ref|YP_004616523.1| - 0.00031 19.6 39.6 0.00031 19.6 27.5 2.1 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|336477383|ref|YP_004616524.1| - 1.4e-26 93.4 0.0 2.2e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477383|ref|YP_004616524.1| - 7.2e-14 52.4 2.6 3e-09 37.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336477383|ref|YP_004616524.1| - 6e-06 25.6 0.5 3e-05 23.3 0.4 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|336477383|ref|YP_004616524.1| - 0.00019 20.9 0.0 0.0073 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|336477383|ref|YP_004616524.1| - 0.00024 20.2 0.0 0.11 11.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|336477383|ref|YP_004616524.1| - 0.00025 20.8 0.3 0.007 16.2 0.2 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|336477383|ref|YP_004616524.1| - 0.0055 16.9 0.3 0.038 14.1 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|336477383|ref|YP_004616524.1| - 0.017 14.7 0.4 0.049 13.3 0.1 1.9 2 1 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|336477383|ref|YP_004616524.1| - 0.021 14.2 0.4 0.24 10.8 0.1 2.1 1 1 1 2 2 2 0 AAA-like domain ATP-synt_ab PF00006.20 gi|336477383|ref|YP_004616524.1| - 0.022 14.2 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|336477383|ref|YP_004616524.1| - 0.026 14.8 0.2 0.041 14.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|336477383|ref|YP_004616524.1| - 0.031 13.7 0.2 0.069 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Pox_A32 PF04665.7 gi|336477383|ref|YP_004616524.1| - 0.04 13.2 0.1 0.46 9.7 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein NTPase_1 PF03266.10 gi|336477383|ref|YP_004616524.1| - 0.048 13.3 0.4 0.83 9.3 0.1 2.1 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|336477383|ref|YP_004616524.1| - 0.057 12.3 0.0 0.089 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|336477383|ref|YP_004616524.1| - 0.093 12.4 0.0 0.21 11.2 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_14 PF13173.1 gi|336477383|ref|YP_004616524.1| - 0.11 12.3 0.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|336477383|ref|YP_004616524.1| - 0.13 11.8 0.2 4.5 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain RecA PF00154.16 gi|336477383|ref|YP_004616524.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein TroA PF01297.12 gi|336477384|ref|YP_004616525.1| - 1.5e-59 201.2 5.2 6e-59 199.3 3.6 1.8 1 1 0 1 1 1 1 Periplasmic solute binding protein family Lactonase PF10282.4 gi|336477384|ref|YP_004616525.1| - 0.0071 15.4 0.0 0.025 13.6 0.0 1.8 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller PD40 PF07676.7 gi|336477384|ref|YP_004616525.1| - 0.098 12.3 0.0 0.94 9.2 0.0 2.4 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat GPDPase_memb PF10110.4 gi|336477385|ref|YP_004616526.1| - 8.2e-08 31.8 13.3 3.8e-07 29.6 4.9 3.6 1 1 2 4 4 4 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.6 gi|336477385|ref|YP_004616526.1| - 3.8e-06 26.5 19.2 1.3e-05 24.7 9.4 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0259) DUF624 PF04854.9 gi|336477385|ref|YP_004616526.1| - 0.0014 18.4 15.1 0.091 12.6 0.9 3.8 2 1 2 4 4 4 3 Protein of unknown function, DUF624 DUF4013 PF13197.1 gi|336477385|ref|YP_004616526.1| - 3.5 6.9 37.1 26 4.1 5.4 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) DUF4384 PF14326.1 gi|336477386|ref|YP_004616527.1| - 0.032 14.0 0.2 3.8 7.4 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4384) DUF1628 PF07790.6 gi|336477387|ref|YP_004616528.1| - 0.0016 19.1 0.5 0.0037 17.9 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Cu_amine_oxidN1 PF07833.6 gi|336477387|ref|YP_004616528.1| - 0.13 12.5 0.0 3.1 8.1 0.0 2.8 1 1 1 2 2 2 0 Copper amine oxidase N-terminal domain Cadherin-like PF12733.2 gi|336477388|ref|YP_004616529.1| - 0.06 13.6 1.1 5 7.4 0.0 2.6 2 1 1 3 3 3 0 Cadherin-like beta sandwich domain Arch_fla_DE PF04659.8 gi|336477392|ref|YP_004616533.1| - 6.8e-29 99.6 0.1 2.8e-28 97.6 0.1 2.1 1 0 0 1 1 1 1 Archaeal flagella protein CENP-F_leu_zip PF10473.4 gi|336477392|ref|YP_004616533.1| - 0.0044 16.8 3.0 0.0044 16.8 2.1 4.3 3 1 2 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.6 gi|336477392|ref|YP_004616533.1| - 0.023 14.5 11.7 1.2 9.0 0.4 4.2 1 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Filo_VP35 PF02097.10 gi|336477392|ref|YP_004616533.1| - 0.08 12.1 3.6 0.073 12.2 1.3 1.7 1 1 0 1 1 1 0 Filoviridae VP35 Baculo_PEP_C PF04513.7 gi|336477392|ref|YP_004616533.1| - 0.11 12.3 10.8 0.15 11.8 1.2 2.9 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.6 gi|336477392|ref|YP_004616533.1| - 0.21 11.5 24.2 0.13 12.1 0.3 5.3 5 2 0 5 5 5 0 Flagella accessory protein C (FlaC) WEMBL PF05701.6 gi|336477392|ref|YP_004616533.1| - 1.6 7.0 16.8 5.9 5.2 11.8 1.7 1 1 0 1 1 1 0 Weak chloroplast movement under blue light IncA PF04156.9 gi|336477392|ref|YP_004616533.1| - 3.1 7.3 21.6 45 3.5 11.0 3.1 2 1 0 2 2 2 0 IncA protein NPV_P10 PF05531.7 gi|336477392|ref|YP_004616533.1| - 4.5 7.5 12.6 11 6.3 1.6 4.7 4 1 0 4 4 4 0 Nucleopolyhedrovirus P10 protein IZUMO PF15005.1 gi|336477392|ref|YP_004616533.1| - 5.7 6.9 9.8 7.3 6.6 0.5 3.5 1 1 3 4 4 4 0 Izumo sperm-egg fusion DAP_epimerase PF01678.14 gi|336477393|ref|YP_004616534.1| - 1.3e-56 189.7 3.2 3.4e-30 104.4 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|336477393|ref|YP_004616534.1| - 0.00038 19.3 0.1 0.0083 15.0 0.0 2.1 2 0 0 2 2 2 2 Proline racemase ATP-synt_D PF01813.12 gi|336477394|ref|YP_004616535.1| - 3.4e-62 209.5 8.2 3.7e-62 209.3 5.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF4533 PF15047.1 gi|336477394|ref|YP_004616535.1| - 0.052 12.9 3.0 0.082 12.3 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4533) Ead_Ea22 PF13935.1 gi|336477394|ref|YP_004616535.1| - 0.067 13.5 0.3 1.7 9.0 0.0 2.2 2 0 0 2 2 2 0 Ead/Ea22-like protein ATP-synt_ab PF00006.20 gi|336477395|ref|YP_004616536.1| - 8.5e-59 198.6 0.0 1.1e-58 198.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|336477395|ref|YP_004616536.1| - 4.8e-17 62.4 0.1 8.7e-17 61.6 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|336477395|ref|YP_004616536.1| - 1.2e-09 38.2 1.2 1.2e-09 38.2 0.8 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|336477395|ref|YP_004616536.1| - 3.4e-06 26.8 0.5 9e-06 25.5 0.3 1.8 1 0 0 1 1 1 1 HAS barrel domain Phage-MuB_C PF09077.6 gi|336477395|ref|YP_004616536.1| - 0.043 13.4 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 Mu B transposition protein, C terminal ATP-synt_ab PF00006.20 gi|336477396|ref|YP_004616537.1| - 2.2e-97 324.7 0.0 3.3e-97 324.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|336477396|ref|YP_004616537.1| - 3.7e-20 72.4 3.6 7.9e-20 71.4 2.5 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|336477396|ref|YP_004616537.1| - 2e-15 56.7 2.2 2e-15 56.7 1.5 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|336477396|ref|YP_004616537.1| - 0.0066 16.4 0.2 1.5 8.8 0.0 2.6 2 0 0 2 2 2 1 Peptidase family M23 RnfC_N PF13375.1 gi|336477396|ref|YP_004616537.1| - 0.021 14.5 0.9 0.24 11.1 0.1 2.4 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.1 gi|336477396|ref|YP_004616537.1| - 0.062 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NQRA PF05896.6 gi|336477396|ref|YP_004616537.1| - 0.16 11.1 0.9 1 8.4 0.0 2.1 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YajC PF02699.10 gi|336477396|ref|YP_004616537.1| - 0.33 10.6 1.8 18 5.0 0.3 2.7 2 0 0 2 2 2 0 Preprotein translocase subunit DUF1932 PF09130.6 gi|336477396|ref|YP_004616537.1| - 0.39 10.4 2.4 4 7.2 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.12 gi|336477397|ref|YP_004616538.1| - 6.2e-20 71.3 0.1 7e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit UPRTase PF14681.1 gi|336477397|ref|YP_004616538.1| - 0.099 11.8 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase vATP-synt_AC39 PF01992.11 gi|336477398|ref|YP_004616539.1| - 5e-90 302.0 11.4 5.7e-90 301.8 7.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit HECT PF00632.20 gi|336477398|ref|YP_004616539.1| - 0.012 14.7 0.1 0.033 13.3 0.1 1.7 1 1 1 2 2 2 0 HECT-domain (ubiquitin-transferase) HU-DNA_bdg PF14848.1 gi|336477398|ref|YP_004616539.1| - 0.068 12.8 0.1 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 DNA-binding domain vATP-synt_E PF01991.13 gi|336477399|ref|YP_004616540.1| - 7.5e-32 110.2 12.8 2.3e-31 108.6 8.8 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|336477399|ref|YP_004616540.1| - 0.0016 18.2 5.0 0.0035 17.1 3.5 1.6 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|336477399|ref|YP_004616540.1| - 0.03 13.5 3.6 0.044 13.0 1.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) ATP-synt_C PF00137.16 gi|336477400|ref|YP_004616541.1| - 2.5e-17 62.5 14.1 2.8e-17 62.3 9.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|336477401|ref|YP_004616542.1| - 2.9e-106 356.1 21.1 3.1e-72 243.6 7.7 3.1 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family MerR-DNA-bind PF09278.6 gi|336477401|ref|YP_004616542.1| - 0.0073 16.6 4.2 0.74 10.2 0.8 2.7 2 1 1 3 3 3 2 MerR, DNA binding NPV_P10 PF05531.7 gi|336477401|ref|YP_004616542.1| - 0.064 13.5 0.2 5.5 7.3 0.0 2.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein TPX2 PF06886.6 gi|336477401|ref|YP_004616542.1| - 0.22 11.6 1.5 0.48 10.5 1.0 1.5 1 0 0 1 1 1 0 Targeting protein for Xklp2 (TPX2) Prefoldin_2 PF01920.15 gi|336477401|ref|YP_004616542.1| - 0.38 10.5 4.1 3.6 7.3 0.4 2.5 2 0 0 2 2 2 0 Prefoldin subunit Tup_N PF08581.5 gi|336477401|ref|YP_004616542.1| - 0.55 10.4 7.7 1.4 9.1 0.0 3.5 3 1 1 4 4 4 0 Tup N-terminal TBPIP PF07106.8 gi|336477401|ref|YP_004616542.1| - 0.91 9.0 6.3 5.8 6.4 0.8 2.3 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ATP-synt_B PF00430.13 gi|336477402|ref|YP_004616543.1| - 1.9e-08 34.1 21.2 1e-05 25.3 12.0 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|336477402|ref|YP_004616543.1| - 0.00024 21.3 17.8 0.00031 21.0 12.4 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.3 gi|336477402|ref|YP_004616543.1| - 0.00034 19.9 20.9 0.021 14.0 5.5 3.0 1 1 2 3 3 3 3 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|336477402|ref|YP_004616543.1| - 0.0042 16.8 3.3 0.0042 16.8 2.3 1.9 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E CCDC155 PF14662.1 gi|336477402|ref|YP_004616543.1| - 0.011 15.3 10.1 0.012 15.2 7.0 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 ApoLp-III PF07464.6 gi|336477402|ref|YP_004616543.1| - 0.014 15.4 12.7 0.016 15.2 8.8 1.0 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF883 PF05957.8 gi|336477402|ref|YP_004616543.1| - 0.032 14.6 13.4 0.37 11.2 6.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Chorismate_synt PF01264.16 gi|336477402|ref|YP_004616543.1| - 0.036 12.5 1.9 0.042 12.3 1.3 1.2 1 0 0 1 1 1 0 Chorismate synthase Cytochrom_C552 PF02335.10 gi|336477402|ref|YP_004616543.1| - 0.14 10.7 5.1 0.15 10.7 3.6 1.0 1 0 0 1 1 1 0 Cytochrome c552 PKK PF12474.3 gi|336477402|ref|YP_004616543.1| - 0.35 10.5 10.6 0.47 10.1 7.4 1.2 1 0 0 1 1 1 0 Polo kinase kinase NSP2_assoc PF14758.1 gi|336477402|ref|YP_004616543.1| - 0.47 10.5 3.2 0.65 10.0 2.2 1.1 1 0 0 1 1 1 0 Non-essential region of nsp2 of arterivirus polyprotein Exonuc_VII_L PF02601.10 gi|336477402|ref|YP_004616543.1| - 2.1 7.4 7.6 3.3 6.8 5.3 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit DivIVA PF05103.8 gi|336477402|ref|YP_004616543.1| - 2.3 8.2 16.1 28 4.7 11.1 2.0 1 1 0 1 1 1 0 DivIVA protein Phasin PF05597.6 gi|336477402|ref|YP_004616543.1| - 2.6 7.7 11.6 3.2 7.5 1.9 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) LUC7 PF03194.10 gi|336477402|ref|YP_004616543.1| - 2.7 7.4 9.1 3.4 7.1 6.3 1.2 1 0 0 1 1 1 0 LUC7 N_terminus vATP-synt_E PF01991.13 gi|336477402|ref|YP_004616543.1| - 2.7 7.1 21.9 2.7 7.2 9.0 2.2 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF4230 PF14014.1 gi|336477402|ref|YP_004616543.1| - 3.6 7.4 12.6 1.4 8.7 4.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) RNA_pol_Rpb4 PF03874.11 gi|336477402|ref|YP_004616543.1| - 3.8 7.5 7.1 18 5.3 4.9 1.9 1 1 0 1 1 1 0 RNA polymerase Rpb4 DUF2383 PF09537.5 gi|336477402|ref|YP_004616543.1| - 5 7.4 11.0 3.2 8.0 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) KfrA_N PF11740.3 gi|336477402|ref|YP_004616543.1| - 5.2 7.5 13.8 3 8.2 5.7 2.2 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term Radical_SAM PF04055.16 gi|336477403|ref|YP_004616544.1| - 1.1e-12 48.4 0.0 1.8e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|336477403|ref|YP_004616544.1| - 6e-07 29.7 0.3 2.1e-06 27.9 0.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|336477403|ref|YP_004616544.1| - 0.0041 17.2 0.0 0.0082 16.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain polyprenyl_synt PF00348.12 gi|336477404|ref|YP_004616545.1| - 3.1e-47 160.6 0.2 4.4e-47 160.1 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase CcmE PF03100.10 gi|336477405|ref|YP_004616546.1| - 3.8e-10 39.4 0.1 4.1e-10 39.3 0.0 1.0 1 0 0 1 1 1 1 CcmE tRNA_anti-like PF12869.2 gi|336477405|ref|YP_004616546.1| - 0.018 14.5 1.7 2.8 7.4 0.1 2.0 1 1 1 2 2 2 0 tRNA_anti-like Radical_SAM PF04055.16 gi|336477407|ref|YP_004616548.1| - 4.1e-20 72.6 0.0 2.8e-19 69.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336477407|ref|YP_004616548.1| - 3.5e-09 36.8 0.0 8.3e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336477407|ref|YP_004616548.1| - 4e-07 30.0 0.0 1.1e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|336477407|ref|YP_004616548.1| - 2e-05 24.8 0.7 4.6e-05 23.6 0.5 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain HTH_AsnC-type PF13404.1 gi|336477408|ref|YP_004616549.1| - 1.8e-07 30.5 0.6 6.5e-07 28.7 0.4 1.9 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|336477408|ref|YP_004616549.1| - 0.0037 16.6 3.2 0.66 9.4 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|336477408|ref|YP_004616549.1| - 0.022 14.4 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 AsnC family DUF4423 PF14394.1 gi|336477408|ref|YP_004616549.1| - 0.031 13.8 0.0 0.043 13.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|336477408|ref|YP_004616549.1| - 0.089 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336477409|ref|YP_004616550.1| - 0.0084 15.4 0.2 0.052 12.9 0.1 2.2 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Aldo_ket_red PF00248.16 gi|336477409|ref|YP_004616550.1| - 0.021 13.6 0.0 0.023 13.5 0.0 1.3 1 1 0 1 1 1 0 Aldo/keto reductase family MarR_2 PF12802.2 gi|336477409|ref|YP_004616550.1| - 0.021 14.5 0.0 0.068 12.8 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.1 gi|336477409|ref|YP_004616550.1| - 0.034 13.6 0.0 0.43 10.1 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HEPN PF05168.9 gi|336477409|ref|YP_004616550.1| - 0.036 13.9 0.1 0.13 12.1 0.0 1.8 1 1 1 2 2 2 0 HEPN domain DUF4258 PF14076.1 gi|336477409|ref|YP_004616550.1| - 0.08 12.9 0.1 14 5.7 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4258) PPR PF01535.15 gi|336477409|ref|YP_004616550.1| - 0.092 12.7 0.1 6.3 7.0 0.1 2.5 2 0 0 2 2 2 0 PPR repeat HisG_C PF08029.6 gi|336477409|ref|YP_004616550.1| - 0.12 12.3 0.1 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 HisG, C-terminal domain HTH_Tnp_ISL3 PF13542.1 gi|336477409|ref|YP_004616550.1| - 0.13 11.5 0.0 0.31 10.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 NAD_binding_7 PF13241.1 gi|336477410|ref|YP_004616551.1| - 6.7e-21 74.4 0.3 1.5e-20 73.3 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|336477410|ref|YP_004616551.1| - 0.0062 16.5 0.4 0.013 15.5 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain Man-6-P_recep PF02157.10 gi|336477410|ref|YP_004616551.1| - 0.041 12.8 0.0 0.058 12.3 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate receptor GlutR_N PF05201.10 gi|336477411|ref|YP_004616552.1| - 1.2e-41 141.7 1.1 2.2e-41 140.9 0.8 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|336477411|ref|YP_004616552.1| - 1.5e-37 128.7 1.3 2.5e-37 127.9 0.2 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|336477411|ref|YP_004616552.1| - 8.9e-20 70.5 1.5 1.6e-19 69.7 0.5 1.9 2 0 0 2 2 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|336477411|ref|YP_004616552.1| - 1.1e-08 35.3 0.2 5e-08 33.2 0.1 2.2 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|336477411|ref|YP_004616552.1| - 6.9e-07 29.4 0.1 1.7e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding OCD_Mu_crystall PF02423.10 gi|336477411|ref|YP_004616552.1| - 1.4e-06 27.3 0.5 4.6e-06 25.6 0.1 1.9 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|336477411|ref|YP_004616552.1| - 7.7e-06 25.8 0.0 1.5e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336477411|ref|YP_004616552.1| - 8.1e-06 25.0 0.1 1.5e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|336477411|ref|YP_004616552.1| - 9.3e-05 21.5 0.3 0.94 8.5 0.0 3.2 2 1 1 3 3 3 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|336477411|ref|YP_004616552.1| - 0.00012 21.8 0.0 0.00032 20.3 0.0 1.8 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein NAD_binding_10 PF13460.1 gi|336477411|ref|YP_004616552.1| - 0.00053 20.0 0.7 0.00086 19.3 0.1 1.7 2 0 0 2 2 1 1 NADH(P)-binding IlvN PF07991.7 gi|336477411|ref|YP_004616552.1| - 0.00086 18.7 0.0 0.0038 16.6 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|336477411|ref|YP_004616552.1| - 0.0014 19.1 0.6 0.008 16.6 0.0 2.4 3 0 0 3 3 2 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|336477411|ref|YP_004616552.1| - 0.0039 17.1 1.5 0.022 14.7 1.0 2.5 1 1 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|336477411|ref|YP_004616552.1| - 0.0082 15.6 0.0 0.02 14.3 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|336477411|ref|YP_004616552.1| - 0.0083 15.9 1.1 0.33 10.7 0.2 2.7 1 1 1 2 2 2 1 ThiF family Saccharop_dh PF03435.13 gi|336477411|ref|YP_004616552.1| - 0.012 14.6 0.1 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Malic_M PF03949.10 gi|336477411|ref|YP_004616552.1| - 0.015 14.8 1.6 0.26 10.7 0.0 2.3 1 1 0 2 2 2 0 Malic enzyme, NAD binding domain Las1 PF04031.8 gi|336477411|ref|YP_004616552.1| - 0.029 14.0 0.1 0.62 9.7 0.0 2.4 2 0 0 2 2 2 0 Las1-like CPSase_L_chain PF00289.17 gi|336477411|ref|YP_004616552.1| - 0.032 14.3 0.1 0.11 12.6 0.1 1.9 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|336477411|ref|YP_004616552.1| - 0.035 13.7 0.1 0.12 11.9 0.1 2.0 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|336477411|ref|YP_004616552.1| - 0.037 12.6 0.1 0.1 11.2 0.0 1.8 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|336477411|ref|YP_004616552.1| - 0.049 13.3 0.2 0.17 11.5 0.1 2.0 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|336477411|ref|YP_004616552.1| - 0.053 12.4 0.2 0.095 11.5 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Hydrolase_6 PF13344.1 gi|336477411|ref|YP_004616552.1| - 0.069 13.0 0.0 0.36 10.7 0.0 2.3 2 1 0 2 2 1 0 Haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.9 gi|336477411|ref|YP_004616552.1| - 0.3 10.9 1.5 1.6 8.5 1.0 2.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ALAD PF00490.16 gi|336477412|ref|YP_004616553.1| - 8.1e-147 488.2 0.2 9.2e-147 488.1 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_3 PF00202.16 gi|336477413|ref|YP_004616554.1| - 2.7e-69 233.5 0.0 3.7e-69 233.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.15 gi|336477414|ref|YP_004616555.1| - 1.3e-67 226.8 0.2 1.8e-67 226.4 0.1 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|336477414|ref|YP_004616555.1| - 4e-10 39.6 0.1 8.8e-10 38.5 0.1 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DHO_dh PF01180.16 gi|336477415|ref|YP_004616556.1| - 1.4e-64 217.8 1.4 1.6e-64 217.7 1.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|336477415|ref|YP_004616556.1| - 2e-10 40.0 0.4 1.4e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|336477415|ref|YP_004616556.1| - 2.7e-08 33.3 0.1 4.4e-08 32.6 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|336477415|ref|YP_004616556.1| - 8.6e-05 21.9 0.3 0.0038 16.5 0.0 2.9 3 1 0 3 3 3 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|336477415|ref|YP_004616556.1| - 0.00027 19.9 0.6 0.00066 18.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|336477415|ref|YP_004616556.1| - 0.024 13.5 0.4 0.046 12.6 0.3 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NAD_binding_1 PF00175.16 gi|336477416|ref|YP_004616557.1| - 9.6e-12 45.4 0.0 1.6e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|336477416|ref|YP_004616557.1| - 4.2e-10 38.9 7.3 8.8e-10 37.9 5.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|336477416|ref|YP_004616557.1| - 2.8e-05 24.1 0.0 0.00014 21.9 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Peptidase_M23 PF01551.17 gi|336477417|ref|YP_004616558.1| - 4.8e-18 64.9 0.0 7.7e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M23 RnfC_N PF13375.1 gi|336477417|ref|YP_004616558.1| - 0.0056 16.3 0.1 0.36 10.5 0.0 2.3 2 0 0 2 2 2 2 RnfC Barrel sandwich hybrid domain TIR_2 PF13676.1 gi|336477418|ref|YP_004616559.1| - 1.1e-10 41.5 0.0 1.9e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.10 gi|336477418|ref|YP_004616559.1| - 7.5e-05 22.5 0.0 0.00013 21.7 0.0 1.4 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase PyrI_C PF02748.10 gi|336477418|ref|YP_004616559.1| - 0.00013 21.3 1.6 0.17 11.3 0.1 2.4 1 1 1 2 2 2 2 Aspartate carbamoyltransferase regulatory chain, metal binding domain Cys_rich_CPXG PF14255.1 gi|336477418|ref|YP_004616559.1| - 0.0077 16.0 1.2 0.068 12.9 0.1 2.3 2 0 0 2 2 2 1 Cysteine-rich CPXCG CpXC PF14353.1 gi|336477418|ref|YP_004616559.1| - 0.0095 15.8 1.3 0.03 14.3 0.5 2.0 2 1 1 3 3 3 2 CpXC protein DUF866 PF05907.8 gi|336477418|ref|YP_004616559.1| - 0.039 13.4 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) zf-Di19 PF05605.7 gi|336477418|ref|YP_004616559.1| - 0.055 13.6 0.7 0.86 9.7 0.1 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-BED PF02892.10 gi|336477418|ref|YP_004616559.1| - 0.084 12.6 0.7 1.5 8.6 0.0 2.4 1 1 1 2 2 2 0 BED zinc finger Lar_restr_allev PF14354.1 gi|336477418|ref|YP_004616559.1| - 0.11 12.8 0.5 0.34 11.2 0.4 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.1 gi|336477418|ref|YP_004616559.1| - 0.12 12.0 0.9 8.4 6.1 0.2 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DZR PF12773.2 gi|336477418|ref|YP_004616559.1| - 0.15 11.9 0.5 0.34 10.7 0.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336477418|ref|YP_004616559.1| - 0.59 9.6 2.7 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336477418|ref|YP_004616559.1| - 0.81 8.9 2.9 2.9 7.2 2.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain AAA PF00004.24 gi|336477419|ref|YP_004616560.1| - 5.8e-44 149.4 0.8 2.7e-43 147.3 0.0 2.4 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336477419|ref|YP_004616560.1| - 3.3e-06 26.8 0.0 1e-05 25.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Leu_zip PF15294.1 gi|336477419|ref|YP_004616560.1| - 3.1e-05 23.2 1.7 4.8e-05 22.5 1.2 1.2 1 0 0 1 1 1 1 Leucine zipper AAA_22 PF13401.1 gi|336477419|ref|YP_004616560.1| - 4.7e-05 23.5 0.1 0.0017 18.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|336477419|ref|YP_004616560.1| - 5.1e-05 22.4 0.0 0.00011 21.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|336477419|ref|YP_004616560.1| - 5.7e-05 23.1 0.0 0.00024 21.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|336477419|ref|YP_004616560.1| - 0.00018 22.3 0.2 0.00088 20.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|336477419|ref|YP_004616560.1| - 0.00049 20.0 0.0 0.0013 18.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|336477419|ref|YP_004616560.1| - 0.0005 20.2 0.0 0.0053 16.9 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.1 gi|336477419|ref|YP_004616560.1| - 0.00075 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336477419|ref|YP_004616560.1| - 0.0013 18.3 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|336477419|ref|YP_004616560.1| - 0.0022 17.4 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|336477419|ref|YP_004616560.1| - 0.0071 15.8 0.0 0.053 12.9 0.0 2.3 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|336477419|ref|YP_004616560.1| - 0.0073 15.9 0.0 0.018 14.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|336477419|ref|YP_004616560.1| - 0.0094 14.6 0.1 0.018 13.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|336477419|ref|YP_004616560.1| - 0.013 15.8 0.1 0.058 13.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|336477419|ref|YP_004616560.1| - 0.014 15.4 0.0 0.041 13.9 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain COG6 PF06419.6 gi|336477419|ref|YP_004616560.1| - 0.018 13.2 1.6 0.029 12.5 1.1 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 AAA_28 PF13521.1 gi|336477419|ref|YP_004616560.1| - 0.019 14.9 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|336477419|ref|YP_004616560.1| - 0.02 13.9 0.0 0.044 12.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|336477419|ref|YP_004616560.1| - 0.024 13.5 0.0 0.048 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) CPT PF07931.7 gi|336477419|ref|YP_004616560.1| - 0.026 14.1 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Mg_chelatase PF01078.16 gi|336477419|ref|YP_004616560.1| - 0.028 13.5 0.1 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|336477419|ref|YP_004616560.1| - 0.029 13.3 0.0 0.056 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|336477419|ref|YP_004616560.1| - 0.034 13.7 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336477419|ref|YP_004616560.1| - 0.034 13.5 0.5 0.11 11.9 0.3 1.8 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|336477419|ref|YP_004616560.1| - 0.041 12.7 0.1 0.075 11.8 0.1 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|336477419|ref|YP_004616560.1| - 0.042 13.0 0.3 0.48 9.6 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.1 gi|336477419|ref|YP_004616560.1| - 0.048 13.5 0.0 0.097 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF904 PF06005.7 gi|336477419|ref|YP_004616560.1| - 0.061 13.6 1.6 0.13 12.5 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Torsin PF06309.6 gi|336477419|ref|YP_004616560.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Torsin NACHT PF05729.7 gi|336477419|ref|YP_004616560.1| - 0.071 12.7 0.1 0.76 9.4 0.0 2.3 1 1 1 2 2 2 0 NACHT domain GrpE PF01025.14 gi|336477419|ref|YP_004616560.1| - 0.076 12.5 0.7 0.18 11.3 0.1 1.9 2 0 0 2 2 2 0 GrpE KaiC PF06745.8 gi|336477419|ref|YP_004616560.1| - 0.11 11.6 1.3 0.23 10.5 0.1 2.1 2 1 1 3 3 3 0 KaiC AAA_21 PF13304.1 gi|336477419|ref|YP_004616560.1| - 0.11 12.3 0.4 22 4.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain DMPK_coil PF08826.5 gi|336477419|ref|YP_004616560.1| - 0.3 10.9 2.6 0.74 9.7 1.8 1.6 1 0 0 1 1 1 0 DMPK coiled coil domain like AAA_23 PF13476.1 gi|336477419|ref|YP_004616560.1| - 0.31 11.3 6.4 9.4 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Ax_dynein_light PF10211.4 gi|336477419|ref|YP_004616560.1| - 0.67 9.7 3.3 1.2 8.9 2.3 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain Penicillinase_R PF03965.11 gi|336477420|ref|YP_004616561.1| - 0.00014 21.8 0.2 0.00014 21.8 0.2 1.9 2 0 0 2 2 2 1 Penicillinase repressor DUF131 PF01998.12 gi|336477421|ref|YP_004616562.1| - 4.3e-15 54.8 9.0 4.3e-15 54.8 6.2 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 Tic20 PF09685.5 gi|336477421|ref|YP_004616562.1| - 0.13 12.2 5.0 0.19 11.6 3.5 1.2 1 0 0 1 1 1 0 Tic20-like protein Bax1-I PF01027.15 gi|336477421|ref|YP_004616562.1| - 0.18 11.3 9.6 0.23 11.0 6.7 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF202 PF02656.10 gi|336477421|ref|YP_004616562.1| - 3.6 7.8 5.2 9.3 6.5 3.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4418 PF14387.1 gi|336477421|ref|YP_004616562.1| - 4.5 7.0 6.9 2.6 7.8 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) PsbH PF00737.15 gi|336477421|ref|YP_004616562.1| - 4.6 6.8 8.7 3.2 7.4 0.5 2.2 2 0 0 2 2 2 0 Photosystem II 10 kDa phosphoprotein DUF131 PF01998.12 gi|336477422|ref|YP_004616563.1| - 3.2e-21 74.4 2.8 3.2e-21 74.4 1.9 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF969 PF06149.7 gi|336477422|ref|YP_004616563.1| - 0.00066 18.9 0.5 0.012 14.8 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF969) DUF3784 PF12650.2 gi|336477422|ref|YP_004616563.1| - 0.0087 15.9 1.4 0.68 9.9 0.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3784) Cation_efflux PF01545.16 gi|336477422|ref|YP_004616563.1| - 0.019 14.0 0.1 0.021 13.8 0.1 1.1 1 0 0 1 1 1 0 Cation efflux family DUF3955 PF13127.1 gi|336477422|ref|YP_004616563.1| - 0.058 12.9 4.0 0.058 12.9 2.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) Claudin_2 PF13903.1 gi|336477422|ref|YP_004616563.1| - 0.099 12.3 3.8 0.24 11.0 0.3 2.1 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction VirB3 PF05101.8 gi|336477422|ref|YP_004616563.1| - 0.099 12.6 2.1 3.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein RSN1_TM PF13967.1 gi|336477422|ref|YP_004616563.1| - 0.22 11.0 1.8 0.85 9.1 0.0 2.1 2 0 0 2 2 2 0 Late exocytosis, associated with Golgi transport DUF2973 PF11189.3 gi|336477422|ref|YP_004616563.1| - 0.56 10.0 0.0 0.56 10.0 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2973) UvrB PF12344.3 gi|336477423|ref|YP_004616564.1| - 8.1e-23 79.6 2.6 1.9e-22 78.4 1.8 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|336477423|ref|YP_004616564.1| - 2.8e-14 52.7 2.2 3.4e-14 52.4 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336477423|ref|YP_004616564.1| - 3.5e-12 46.5 2.2 7.1e-11 42.2 0.0 3.2 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|336477423|ref|YP_004616564.1| - 1.3e-11 43.6 5.3 5.7e-11 41.5 3.7 2.2 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.24 gi|336477423|ref|YP_004616564.1| - 1.4e-05 24.6 0.1 0.0015 18.0 0.0 3.6 4 0 0 4 4 4 1 DEAD/DEAH box helicase UvrD-helicase PF00580.16 gi|336477423|ref|YP_004616564.1| - 0.0003 20.1 2.4 0.016 14.5 1.6 2.4 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain PG_binding_4 PF12229.3 gi|336477423|ref|YP_004616564.1| - 0.0014 18.8 4.9 1.7 8.9 0.0 3.3 3 0 0 3 3 3 2 Putative peptidoglycan binding domain AAA_19 PF13245.1 gi|336477423|ref|YP_004616564.1| - 0.02 14.6 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain UB2H PF14814.1 gi|336477423|ref|YP_004616564.1| - 0.047 13.4 0.2 0.75 9.5 0.0 2.9 2 1 1 3 3 3 0 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|336477423|ref|YP_004616564.1| - 0.074 12.8 0.1 0.074 12.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 Fe-ADH_2 PF13685.1 gi|336477423|ref|YP_004616564.1| - 0.076 12.3 0.6 0.39 9.9 0.0 2.2 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase DUF4091 PF13320.1 gi|336477423|ref|YP_004616564.1| - 0.15 12.0 0.0 7.7 6.5 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4091) Fe-ADH PF00465.14 gi|336477423|ref|YP_004616564.1| - 0.19 10.3 0.0 0.66 8.5 0.0 1.8 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase ABC_tran PF00005.22 gi|336477424|ref|YP_004616565.1| - 6e-34 117.2 0.0 9.7e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477424|ref|YP_004616565.1| - 2.4e-14 53.9 0.1 5.3e-09 36.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|336477424|ref|YP_004616565.1| - 5.2e-06 25.7 0.2 0.00066 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336477424|ref|YP_004616565.1| - 1.3e-05 25.6 0.0 2.9e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|336477424|ref|YP_004616565.1| - 1.7e-05 25.2 0.0 3.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|336477424|ref|YP_004616565.1| - 0.00012 21.4 0.3 0.00022 20.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|336477424|ref|YP_004616565.1| - 0.0029 17.8 0.4 0.12 12.6 0.2 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|336477424|ref|YP_004616565.1| - 0.0051 16.0 0.1 0.1 11.7 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336477424|ref|YP_004616565.1| - 0.025 14.5 0.0 0.044 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|336477424|ref|YP_004616565.1| - 0.038 13.7 0.2 0.2 11.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|336477424|ref|YP_004616565.1| - 0.038 14.1 0.3 0.23 11.5 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336477424|ref|YP_004616565.1| - 0.039 13.3 0.2 0.18 11.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|336477424|ref|YP_004616565.1| - 0.039 13.8 0.1 0.08 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|336477424|ref|YP_004616565.1| - 0.049 13.0 0.1 0.12 11.8 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|336477424|ref|YP_004616565.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|336477424|ref|YP_004616565.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Cpn60_TCP1 PF00118.19 gi|336477427|ref|YP_004616568.1| - 2.9e-170 567.0 13.7 3.4e-170 566.8 9.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_16 PF13191.1 gi|336477428|ref|YP_004616569.1| - 7.7e-12 45.5 0.0 1.3e-11 44.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336477428|ref|YP_004616569.1| - 1.1e-08 35.2 0.0 4.1e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|336477428|ref|YP_004616569.1| - 2.7e-08 34.0 0.0 9.4e-08 32.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|336477428|ref|YP_004616569.1| - 4.2e-07 29.5 0.0 1.1e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|336477428|ref|YP_004616569.1| - 4.5e-07 29.8 0.0 8.8e-07 28.8 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|336477428|ref|YP_004616569.1| - 1.9e-05 23.6 0.0 2.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|336477428|ref|YP_004616569.1| - 3.8e-05 23.3 0.0 6.6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.12 gi|336477428|ref|YP_004616569.1| - 4.6e-05 22.9 0.1 0.03 13.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|336477428|ref|YP_004616569.1| - 8.1e-05 22.2 0.0 0.00024 20.7 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|336477428|ref|YP_004616569.1| - 0.00021 20.8 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_11 PF13086.1 gi|336477428|ref|YP_004616569.1| - 0.00036 20.1 0.0 0.00064 19.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|336477428|ref|YP_004616569.1| - 0.00071 18.6 0.0 0.001 18.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|336477428|ref|YP_004616569.1| - 0.001 18.1 0.0 0.0028 16.7 0.0 1.7 2 0 0 2 2 1 1 Zeta toxin AAA_14 PF13173.1 gi|336477428|ref|YP_004616569.1| - 0.0011 18.8 0.3 0.009 15.9 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336477428|ref|YP_004616569.1| - 0.0028 17.9 0.7 0.017 15.3 0.1 2.4 1 1 1 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|336477428|ref|YP_004616569.1| - 0.0032 17.1 0.0 0.02 14.6 0.0 2.3 3 0 0 3 3 3 1 NTPase T2SE PF00437.15 gi|336477428|ref|YP_004616569.1| - 0.004 16.1 0.0 0.0089 14.9 0.0 1.5 1 1 0 1 1 1 1 Type II/IV secretion system protein RuvB_N PF05496.7 gi|336477428|ref|YP_004616569.1| - 0.0046 16.0 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF4145 PF13643.1 gi|336477428|ref|YP_004616569.1| - 0.01 15.6 0.0 0.046 13.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4145) TIP49 PF06068.8 gi|336477428|ref|YP_004616569.1| - 0.014 14.0 0.0 0.095 11.3 0.0 1.9 2 0 0 2 2 2 0 TIP49 C-terminus KAP_NTPase PF07693.9 gi|336477428|ref|YP_004616569.1| - 0.019 13.9 0.6 0.22 10.4 0.0 2.0 1 1 1 2 2 2 0 KAP family P-loop domain AAA_10 PF12846.2 gi|336477428|ref|YP_004616569.1| - 0.02 14.3 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain KaiC PF06745.8 gi|336477428|ref|YP_004616569.1| - 0.028 13.5 0.3 0.73 8.9 0.0 2.6 1 1 1 2 2 2 0 KaiC RNA_helicase PF00910.17 gi|336477428|ref|YP_004616569.1| - 0.043 13.9 0.0 0.14 12.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase RecA PF00154.16 gi|336477428|ref|YP_004616569.1| - 0.044 12.8 0.0 0.066 12.2 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|336477428|ref|YP_004616569.1| - 0.048 13.0 0.2 0.19 11.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|336477428|ref|YP_004616569.1| - 0.058 14.2 1.6 0.2 12.5 1.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|336477428|ref|YP_004616569.1| - 0.095 12.4 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_35 PF14516.1 gi|336477428|ref|YP_004616569.1| - 0.1 11.2 0.2 0.61 8.6 0.2 1.9 1 1 1 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|336477428|ref|YP_004616569.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|336477428|ref|YP_004616569.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain FdhD-NarQ PF02634.10 gi|336477429|ref|YP_004616570.1| - 2.4e-51 174.4 0.0 2.8e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family Zn_protease PF05618.6 gi|336477430|ref|YP_004616571.1| - 5.3e-14 52.0 0.1 1.6e-13 50.4 0.0 1.7 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|336477430|ref|YP_004616571.1| - 3.7e-05 23.1 0.4 0.00032 20.1 0.3 2.0 1 1 0 1 1 1 1 Polypeptide deformylase Aminotran_5 PF00266.14 gi|336477431|ref|YP_004616572.1| - 3.9e-128 427.3 0.0 4.4e-128 427.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336477431|ref|YP_004616572.1| - 3.3e-12 46.1 0.1 5e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|336477431|ref|YP_004616572.1| - 7.8e-08 30.9 0.0 1.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|336477431|ref|YP_004616572.1| - 0.00016 20.9 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|336477431|ref|YP_004616572.1| - 0.042 12.3 0.0 0.067 11.6 0.0 1.3 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Alpha-amylase PF00128.19 gi|336477431|ref|YP_004616572.1| - 0.072 12.4 0.3 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 Alpha amylase, catalytic domain SPRY PF00622.23 gi|336477431|ref|YP_004616572.1| - 0.074 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 SPRY domain YcaO PF02624.11 gi|336477433|ref|YP_004616574.1| - 1.8e-83 280.7 0.0 4.2e-83 279.6 0.0 1.5 2 0 0 2 2 2 1 YcaO-like family TfuA PF07812.7 gi|336477434|ref|YP_004616575.1| - 1.1e-43 147.4 0.4 2.3e-43 146.4 0.1 1.7 2 0 0 2 2 2 1 TfuA-like protein FCD PF07729.7 gi|336477434|ref|YP_004616575.1| - 0.11 12.7 0.0 11 6.3 0.0 2.2 2 0 0 2 2 2 0 FCD domain DUF169 PF02596.10 gi|336477435|ref|YP_004616576.1| - 4.5e-64 215.8 0.0 5.4e-64 215.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF4078 PF13300.1 gi|336477435|ref|YP_004616576.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4078) Fe_dep_repress PF01325.14 gi|336477436|ref|YP_004616577.1| - 5.3e-13 48.6 0.0 7.8e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|336477436|ref|YP_004616577.1| - 2.7e-12 46.2 0.0 4.2e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|336477436|ref|YP_004616577.1| - 4.5e-06 26.2 0.0 1.2e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|336477436|ref|YP_004616577.1| - 3.7e-05 23.3 0.1 0.00016 21.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|336477436|ref|YP_004616577.1| - 6.3e-05 22.5 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336477436|ref|YP_004616577.1| - 0.00041 19.8 0.0 0.00098 18.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|336477436|ref|YP_004616577.1| - 0.0013 18.9 0.0 0.0034 17.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336477436|ref|YP_004616577.1| - 0.0022 17.6 0.1 0.0059 16.2 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_6 PF01418.12 gi|336477436|ref|YP_004616577.1| - 0.0024 17.5 0.0 2.2 8.0 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain, rpiR family HTH_Crp_2 PF13545.1 gi|336477436|ref|YP_004616577.1| - 0.0053 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|336477436|ref|YP_004616577.1| - 0.0061 16.1 0.0 0.17 11.5 0.0 2.5 2 1 0 2 2 2 1 Homeodomain-like domain Rrf2 PF02082.15 gi|336477436|ref|YP_004616577.1| - 0.0068 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Ribosomal_S19e PF01090.14 gi|336477436|ref|YP_004616577.1| - 0.02 14.3 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e GntR PF00392.16 gi|336477436|ref|YP_004616577.1| - 0.036 13.5 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|336477436|ref|YP_004616577.1| - 0.04 13.7 0.0 0.088 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix FeoC PF09012.5 gi|336477436|ref|YP_004616577.1| - 0.07 12.8 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|336477436|ref|YP_004616577.1| - 0.077 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|336477436|ref|YP_004616577.1| - 0.092 12.1 0.1 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF91 PF01939.11 gi|336477437|ref|YP_004616578.1| - 8e-06 25.1 1.0 1.4e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF91 DUF1703 PF08011.6 gi|336477437|ref|YP_004616578.1| - 0.0073 16.0 0.1 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1703) DUF836 PF05768.9 gi|336477437|ref|YP_004616578.1| - 1.9 8.8 7.1 0.67 10.2 0.3 2.7 2 2 1 3 3 3 0 Glutaredoxin-like domain (DUF836) Ammonium_transp PF00909.16 gi|336477438|ref|YP_004616579.1| - 9.4e-33 113.2 28.5 1.5e-32 112.5 19.7 1.3 1 0 0 1 1 1 1 Ammonium Transporter Family MtmB PF05369.7 gi|336477439|ref|YP_004616580.1| - 1.2e-276 916.9 2.9 1.4e-276 916.8 2.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.12 gi|336477440|ref|YP_004616581.1| - 8.2e-19 67.4 0.1 1.9e-18 66.2 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|336477440|ref|YP_004616581.1| - 8.7e-19 67.5 0.4 1.3e-18 67.0 0.3 1.2 1 0 0 1 1 1 1 B12 binding domain Ssl1 PF04056.9 gi|336477440|ref|YP_004616581.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like BATS PF06968.8 gi|336477440|ref|YP_004616581.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain MtmB PF05369.7 gi|336477442|ref|YP_004616583.1| - 3.3e-277 918.8 2.9 3.7e-277 918.7 2.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.12 gi|336477443|ref|YP_004616584.1| - 7.7e-19 67.5 0.1 1.7e-18 66.3 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|336477443|ref|YP_004616584.1| - 8e-19 67.6 0.4 1.2e-18 67.1 0.3 1.2 1 0 0 1 1 1 1 B12 binding domain Ssl1 PF04056.9 gi|336477443|ref|YP_004616584.1| - 0.026 14.1 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like BATS PF06968.8 gi|336477443|ref|YP_004616584.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain SpoVAD PF07451.6 gi|336477443|ref|YP_004616584.1| - 0.15 10.5 1.3 2.1 6.7 0.1 2.2 1 1 1 2 2 2 0 Stage V sporulation protein AD (SpoVAD) DUF1724 PF08350.5 gi|336477444|ref|YP_004616585.1| - 1.3e-24 85.4 0.1 2.9e-24 84.3 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|336477444|ref|YP_004616585.1| - 4.5e-05 23.1 0.1 9e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|336477444|ref|YP_004616585.1| - 0.013 15.8 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|336477444|ref|YP_004616585.1| - 0.038 13.8 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1724 PF08350.5 gi|336477445|ref|YP_004616586.1| - 4.6e-21 74.1 0.0 7.5e-21 73.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_24 PF13412.1 gi|336477445|ref|YP_004616586.1| - 0.01 15.2 0.1 0.03 13.6 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336477445|ref|YP_004616586.1| - 0.041 13.5 0.0 0.094 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HisKA_2 PF07568.7 gi|336477446|ref|YP_004616587.1| - 3.9e-31 106.7 1.2 1e-30 105.4 0.8 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|336477446|ref|YP_004616587.1| - 2.1e-16 59.7 0.5 2.9e-07 30.4 0.1 3.0 1 1 1 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|336477446|ref|YP_004616587.1| - 1.6e-13 50.3 0.2 5.3e-13 48.6 0.2 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_1 PF02743.13 gi|336477446|ref|YP_004616587.1| - 1.1e-10 40.9 0.1 3.9e-10 39.1 0.1 2.0 1 0 0 1 1 1 1 Cache domain HATPase_c_2 PF13581.1 gi|336477446|ref|YP_004616587.1| - 3.2e-08 33.4 0.0 7.7e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|336477446|ref|YP_004616587.1| - 3.4e-06 26.8 0.2 1.5e-05 24.7 0.1 2.2 1 1 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|336477446|ref|YP_004616587.1| - 7.8e-05 23.0 0.1 0.00018 21.8 0.0 1.6 1 0 0 1 1 1 1 HWE histidine kinase HAMP PF00672.20 gi|336477446|ref|YP_004616587.1| - 0.0001 22.4 0.1 0.00024 21.2 0.0 1.7 1 0 0 1 1 1 1 HAMP domain PAS_9 PF13426.1 gi|336477446|ref|YP_004616587.1| - 0.0004 20.7 0.1 0.0027 18.0 0.1 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|336477446|ref|YP_004616587.1| - 0.053 13.1 1.9 0.68 9.5 0.1 2.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|336477447|ref|YP_004616588.1| - 3.2e-23 81.8 0.5 3.7e-23 81.6 0.4 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TrbH PF07283.6 gi|336477447|ref|YP_004616588.1| - 0.025 14.4 0.0 0.043 13.6 0.0 1.5 1 1 0 1 1 1 0 Conjugal transfer protein TrbH FGE-sulfatase PF03781.11 gi|336477448|ref|YP_004616589.1| - 7e-52 176.3 5.7 4.4e-51 173.7 3.9 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Methyltransf_11 PF08241.7 gi|336477449|ref|YP_004616590.1| - 1.1e-16 61.1 0.0 2.1e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336477449|ref|YP_004616590.1| - 1.7e-14 53.7 0.0 2.8e-14 52.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336477449|ref|YP_004616590.1| - 3.8e-14 52.8 0.0 6.7e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477449|ref|YP_004616590.1| - 1.6e-12 47.9 0.0 5.3e-12 46.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336477449|ref|YP_004616590.1| - 1.5e-09 37.9 0.0 2.2e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336477449|ref|YP_004616590.1| - 3.5e-09 36.6 0.0 4.5e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|336477449|ref|YP_004616590.1| - 7.8e-09 34.9 0.0 1.6e-08 33.9 0.0 1.4 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|336477449|ref|YP_004616590.1| - 1.7e-07 31.6 0.0 3.5e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336477449|ref|YP_004616590.1| - 1.3e-05 24.4 0.0 2.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|336477449|ref|YP_004616590.1| - 3.3e-05 23.6 0.0 0.00017 21.3 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase DUF938 PF06080.7 gi|336477449|ref|YP_004616590.1| - 0.00019 21.0 0.0 0.00026 20.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF938) MTS PF05175.9 gi|336477449|ref|YP_004616590.1| - 0.00046 19.6 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.6 gi|336477449|ref|YP_004616590.1| - 0.0026 17.2 0.0 0.0039 16.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_24 PF13578.1 gi|336477449|ref|YP_004616590.1| - 0.055 14.3 0.0 0.094 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336477449|ref|YP_004616590.1| - 0.095 12.2 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Rubrerythrin PF02915.12 gi|336477450|ref|YP_004616591.1| - 4.3e-27 95.1 8.9 3.5e-26 92.1 6.1 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|336477450|ref|YP_004616591.1| - 0.00056 19.6 4.1 0.0018 18.0 2.8 1.9 1 1 0 1 1 1 1 Ferritin-like domain Rubredoxin PF00301.15 gi|336477450|ref|YP_004616591.1| - 0.0021 17.9 4.4 0.066 13.0 3.0 2.4 1 1 0 1 1 1 1 Rubredoxin Nudix_N_2 PF14803.1 gi|336477450|ref|YP_004616591.1| - 0.011 15.4 0.6 0.14 11.8 0.4 2.2 1 1 1 2 2 2 0 Nudix N-terminal RecR PF02132.10 gi|336477450|ref|YP_004616591.1| - 0.014 14.7 1.1 0.03 13.7 0.8 1.5 1 0 0 1 1 1 0 RecR protein DZR PF12773.2 gi|336477450|ref|YP_004616591.1| - 0.015 15.0 0.4 0.024 14.4 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2492 PF10678.4 gi|336477450|ref|YP_004616591.1| - 0.026 14.5 0.1 0.57 10.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) Toxin_51 PF15531.1 gi|336477450|ref|YP_004616591.1| - 0.035 13.8 1.1 0.098 12.4 0.1 1.9 1 1 1 2 2 2 0 Putative toxin 51 zf-C3HC4_3 PF13920.1 gi|336477450|ref|YP_004616591.1| - 0.037 13.7 0.5 0.054 13.1 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|336477450|ref|YP_004616591.1| - 0.076 12.5 1.3 0.16 11.4 0.9 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-P11 PF03854.9 gi|336477450|ref|YP_004616591.1| - 0.093 12.2 0.2 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 P-11 zinc finger Prok-RING_1 PF14446.1 gi|336477450|ref|YP_004616591.1| - 0.13 12.0 2.1 0.21 11.3 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-FPG_IleRS PF06827.9 gi|336477450|ref|YP_004616591.1| - 0.17 11.5 2.0 0.68 9.6 1.6 1.9 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|336477450|ref|YP_004616591.1| - 0.32 10.3 8.6 0.96 8.8 1.7 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Rad50_zn_hook PF04423.9 gi|336477450|ref|YP_004616591.1| - 0.39 10.2 2.9 10 5.6 0.2 2.6 1 1 1 2 2 2 0 Rad50 zinc hook motif Desulfoferrod_N PF06397.7 gi|336477450|ref|YP_004616591.1| - 1.6 8.2 7.6 0.12 11.7 1.3 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Acetyltransf_7 PF13508.1 gi|336477451|ref|YP_004616592.1| - 7.3e-09 35.6 0.0 1.5e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336477451|ref|YP_004616592.1| - 2.1e-08 34.0 0.0 3.7e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336477451|ref|YP_004616592.1| - 9.5e-05 22.5 0.0 0.00014 21.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336477451|ref|YP_004616592.1| - 0.0055 16.6 0.0 0.0093 15.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336477451|ref|YP_004616592.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336477451|ref|YP_004616592.1| - 0.015 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_9 PF13527.1 gi|336477451|ref|YP_004616592.1| - 0.032 14.0 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336477451|ref|YP_004616592.1| - 0.047 13.5 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase OrfB_Zn_ribbon PF07282.6 gi|336477452|ref|YP_004616593.1| - 0.0035 16.9 0.9 0.004 16.7 0.6 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|336477452|ref|YP_004616593.1| - 0.0086 15.8 1.1 0.011 15.5 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon LIM PF00412.17 gi|336477452|ref|YP_004616593.1| - 0.032 14.2 0.6 0.04 13.9 0.4 1.3 1 0 0 1 1 1 0 LIM domain zinc_ribbon_6 PF14599.1 gi|336477452|ref|YP_004616593.1| - 0.06 13.1 1.5 0.28 11.0 1.0 1.9 1 1 1 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.5 gi|336477452|ref|YP_004616593.1| - 0.085 12.8 1.6 0.12 12.3 1.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|336477452|ref|YP_004616593.1| - 0.22 11.3 2.0 6.6 6.5 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DNA_RNApol_7kD PF03604.8 gi|336477452|ref|YP_004616593.1| - 0.27 10.7 2.3 0.94 9.0 1.6 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-trcl PF13451.1 gi|336477452|ref|YP_004616593.1| - 7 6.3 6.9 17 5.1 0.5 2.3 1 1 1 2 2 2 0 Probable zinc-binding domain CxxCxxCC PF03692.10 gi|336477453|ref|YP_004616594.1| - 4.3e-10 39.9 3.7 8.6e-10 38.9 2.0 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.16 gi|336477454|ref|YP_004616595.1| - 3.7e-22 79.2 0.1 1.5e-21 77.2 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|336477454|ref|YP_004616595.1| - 2.9e-10 40.0 0.0 8.1e-10 38.6 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Peptidase_M50 PF02163.17 gi|336477455|ref|YP_004616596.1| - 2.1e-15 56.1 10.1 2.4e-14 52.7 4.5 3.0 2 1 0 2 2 2 1 Peptidase family M50 DUF126 PF01989.11 gi|336477456|ref|YP_004616597.1| - 6.2e-37 125.1 0.0 7.9e-37 124.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|336477457|ref|YP_004616598.1| - 1.5e-151 504.4 0.0 1.7e-151 504.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|336477458|ref|YP_004616599.1| - 6e-127 423.4 3.0 6.9e-127 423.2 2.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DJ-1_PfpI PF01965.19 gi|336477459|ref|YP_004616600.1| - 5.5e-36 123.2 0.0 6.7e-36 122.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|336477459|ref|YP_004616600.1| - 5e-14 51.9 0.0 6.7e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|336477459|ref|YP_004616600.1| - 0.01 15.3 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|336477459|ref|YP_004616600.1| - 0.024 14.0 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|336477459|ref|YP_004616600.1| - 0.031 13.1 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Prismane PF03063.15 gi|336477462|ref|YP_004616603.1| - 6.8e-172 572.4 0.0 7.6e-172 572.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HxlR PF01638.12 gi|336477463|ref|YP_004616604.1| - 1.6e-25 88.5 0.5 2e-25 88.2 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|336477463|ref|YP_004616604.1| - 7.9e-06 25.5 0.1 1.2e-05 24.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|336477463|ref|YP_004616604.1| - 1.1e-05 25.4 0.1 1.5e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|336477463|ref|YP_004616604.1| - 5.7e-05 22.8 0.1 8.7e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2513 PF10711.4 gi|336477463|ref|YP_004616604.1| - 0.00018 21.5 0.1 0.00023 21.2 0.1 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_24 PF13412.1 gi|336477463|ref|YP_004616604.1| - 0.0026 17.1 0.2 0.0047 16.2 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.1 gi|336477463|ref|YP_004616604.1| - 0.0035 16.9 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|336477463|ref|YP_004616604.1| - 0.0063 16.8 0.0 0.0086 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|336477463|ref|YP_004616604.1| - 0.025 14.2 0.1 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF505 PF04458.7 gi|336477463|ref|YP_004616604.1| - 0.034 12.2 0.1 0.039 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR_2 PF12802.2 gi|336477463|ref|YP_004616604.1| - 0.036 13.7 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|336477463|ref|YP_004616604.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix Rod_C PF10493.4 gi|336477463|ref|YP_004616604.1| - 0.064 11.5 0.1 0.082 11.1 0.0 1.1 1 0 0 1 1 1 0 Rough deal protein C-terminal region YjcQ PF09639.5 gi|336477463|ref|YP_004616604.1| - 0.11 12.6 0.1 0.18 11.8 0.1 1.4 1 1 0 1 1 1 0 YjcQ protein HTH_5 PF01022.15 gi|336477463|ref|YP_004616604.1| - 0.13 11.9 0.1 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Flavodoxin_1 PF00258.20 gi|336477464|ref|YP_004616605.1| - 5.2e-10 39.4 0.0 6.6e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|336477464|ref|YP_004616605.1| - 7.2e-06 26.0 0.0 8.5e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|336477464|ref|YP_004616605.1| - 7.9e-05 22.2 0.2 0.0011 18.5 0.1 2.0 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|336477464|ref|YP_004616605.1| - 0.00057 19.3 0.0 0.00074 18.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|336477464|ref|YP_004616605.1| - 0.0082 15.5 0.0 0.26 10.6 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin Pyridox_oxidase PF01243.15 gi|336477465|ref|YP_004616606.1| - 5.4e-12 45.5 0.0 7.1e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|336477465|ref|YP_004616606.1| - 0.065 13.5 0.0 0.088 13.1 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase ADP_ribosyl_GH PF03747.9 gi|336477466|ref|YP_004616607.1| - 2.2e-67 227.8 0.0 2.5e-67 227.6 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase FMN_red PF03358.10 gi|336477467|ref|YP_004616608.1| - 1.4e-09 37.6 0.0 1.7e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase AIM24 PF01987.12 gi|336477468|ref|YP_004616609.1| - 3.6e-51 173.6 1.0 4.1e-51 173.4 0.7 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HisKA_2 PF07568.7 gi|336477469|ref|YP_004616610.1| - 2.9e-32 110.3 2.3 6.8e-32 109.1 1.6 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|336477469|ref|YP_004616610.1| - 2.1e-15 56.9 0.0 3.8e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|336477469|ref|YP_004616610.1| - 1e-12 47.7 0.2 2.6e-11 43.2 0.0 2.3 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|336477469|ref|YP_004616610.1| - 1.7e-10 40.6 0.0 4.4e-10 39.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|336477469|ref|YP_004616610.1| - 2.5e-09 36.6 0.1 7.2e-09 35.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336477469|ref|YP_004616610.1| - 6e-07 29.4 0.0 2.2e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|336477469|ref|YP_004616610.1| - 6.1e-07 29.4 0.1 3e-06 27.2 0.0 2.1 1 1 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|336477469|ref|YP_004616610.1| - 1.1e-06 28.9 0.4 2e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|336477469|ref|YP_004616610.1| - 0.00041 20.1 0.0 0.0009 19.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|336477469|ref|YP_004616610.1| - 0.0075 16.5 0.4 0.034 14.3 0.0 2.2 2 1 1 3 3 3 1 PAS domain DUF202 PF02656.10 gi|336477469|ref|YP_004616610.1| - 0.48 10.6 6.7 3.8 7.8 0.3 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF202) YtpI PF14007.1 gi|336477469|ref|YP_004616610.1| - 1.7 8.6 7.9 0.18 11.7 0.4 2.6 2 0 0 2 2 2 0 YtpI-like protein DUF2023 PF09633.5 gi|336477470|ref|YP_004616611.1| - 3.4e-41 139.2 0.7 4.1e-41 139.0 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2023) Ala_racemase_N PF01168.15 gi|336477471|ref|YP_004616612.1| - 5.6e-42 143.7 0.0 6.8e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Uteroglobin PF01099.12 gi|336477471|ref|YP_004616612.1| - 0.012 15.4 0.0 0.1 12.4 0.0 2.3 2 0 0 2 2 2 0 Uteroglobin family Cas_Cas2CT1978 PF09707.5 gi|336477472|ref|YP_004616613.1| - 9.1e-34 115.2 0.1 1e-33 115.1 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) Cas_Cas1 PF01867.11 gi|336477473|ref|YP_004616614.1| - 8e-21 74.3 0.0 2.2e-13 49.9 0.0 2.0 1 1 1 2 2 2 2 CRISPR associated protein Cas1 CRISPR_assoc PF08798.6 gi|336477474|ref|YP_004616615.1| - 1.8e-49 168.3 0.0 2e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas_Cas5d PF09704.5 gi|336477475|ref|YP_004616616.1| - 7.4e-46 156.4 0.0 8.4e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_CT1975 PF09344.5 gi|336477476|ref|YP_004616617.1| - 1.5e-118 396.2 0.3 1.8e-118 395.9 0.2 1.0 1 0 0 1 1 1 1 CT1975-like protein RST PF12174.3 gi|336477476|ref|YP_004616617.1| - 0.035 13.9 0.0 0.099 12.4 0.0 1.8 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain MFS_Mycoplasma PF07672.8 gi|336477476|ref|YP_004616617.1| - 0.066 12.3 0.1 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Mycoplasma MFS transporter CRISPR_Cse2 PF09485.5 gi|336477477|ref|YP_004616618.1| - 1.2e-28 100.0 0.0 1.4e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) CRISPR_Cse1 PF09481.5 gi|336477478|ref|YP_004616619.1| - 5.2e-107 358.5 0.0 5.9e-107 358.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cse1 (CRISPR_cse1) DEAD PF00270.24 gi|336477479|ref|YP_004616620.1| - 1.8e-05 24.3 0.0 0.00017 21.1 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336477479|ref|YP_004616620.1| - 0.00029 20.6 0.0 0.0011 18.8 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336477479|ref|YP_004616620.1| - 0.00035 20.4 0.0 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF98 PF01947.11 gi|336477480|ref|YP_004616621.1| - 3.8e-20 72.1 0.0 5.1e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF98) UTRA PF07702.8 gi|336477480|ref|YP_004616621.1| - 0.00067 19.2 0.0 0.00091 18.8 0.0 1.1 1 0 0 1 1 1 1 UTRA domain AIRS PF00586.19 gi|336477483|ref|YP_004616624.1| - 1e-18 67.3 0.6 2.1e-18 66.3 0.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|336477483|ref|YP_004616624.1| - 2.2e-15 57.0 0.0 3.4e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.16 gi|336477484|ref|YP_004616625.1| - 3.2e-17 63.2 0.1 4.6e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336477484|ref|YP_004616625.1| - 5.5e-05 23.1 0.0 0.00012 22.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336477484|ref|YP_004616625.1| - 0.00073 19.6 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|336477485|ref|YP_004616626.1| - 3e-30 104.4 0.4 3.6e-30 104.1 0.3 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Cas_Cas02710 PF09670.5 gi|336477485|ref|YP_004616626.1| - 0.029 13.0 0.0 0.037 12.6 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) DUF4318 PF14201.1 gi|336477485|ref|YP_004616626.1| - 0.095 12.5 0.1 0.25 11.1 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4318) Fer4_14 PF13394.1 gi|336477486|ref|YP_004616627.1| - 6e-15 55.3 0.0 9.7e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|336477486|ref|YP_004616627.1| - 1.7e-10 41.3 0.0 2.7e-10 40.6 0.0 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336477486|ref|YP_004616627.1| - 1.3e-09 38.3 0.0 1.9e-09 37.7 0.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.7 gi|336477487|ref|YP_004616628.1| - 1.6e-68 229.6 0.8 1.7e-68 229.4 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.8 gi|336477488|ref|YP_004616629.1| - 8.2e-59 198.4 0.0 9.4e-59 198.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|336477488|ref|YP_004616629.1| - 5.7e-06 25.9 1.0 0.00038 19.9 0.7 2.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|336477488|ref|YP_004616629.1| - 0.001 18.5 0.0 0.013 15.0 0.0 2.1 2 0 0 2 2 2 1 PP-loop family NAD_synthase PF02540.12 gi|336477488|ref|YP_004616629.1| - 0.015 14.1 0.0 0.066 12.0 0.0 1.8 2 0 0 2 2 2 0 NAD synthase Asn_synthase PF00733.16 gi|336477488|ref|YP_004616629.1| - 0.04 13.3 0.0 0.092 12.2 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|336477488|ref|YP_004616629.1| - 0.13 10.7 0.0 0.27 9.7 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase Cupredoxin_1 PF13473.1 gi|336477490|ref|YP_004616631.1| - 0.00037 20.3 0.0 0.00048 19.9 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|336477490|ref|YP_004616631.1| - 0.044 14.0 0.1 1.3 9.3 0.1 2.1 1 1 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family PepSY_TM_1 PF13172.1 gi|336477490|ref|YP_004616631.1| - 5.3 6.9 5.6 1.7 8.4 1.7 1.8 2 0 0 2 2 2 0 PepSY-associated TM helix AMP-binding PF00501.23 gi|336477491|ref|YP_004616632.1| - 2.4e-17 62.4 0.0 3.1e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Sulphotransf PF09037.5 gi|336477491|ref|YP_004616632.1| - 0.18 11.2 0.3 0.84 9.0 0.0 2.0 2 0 0 2 2 2 0 Stf0 sulphotransferase DUF3303 PF11746.3 gi|336477492|ref|YP_004616633.1| - 9.9e-10 38.6 0.0 1.1e-09 38.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) DUF4242 PF14026.1 gi|336477492|ref|YP_004616633.1| - 0.007 16.4 0.0 0.012 15.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4242) SWM_repeat PF13753.1 gi|336477493|ref|YP_004616634.1| - 0.017 14.1 0.4 0.021 13.8 0.3 1.3 1 0 0 1 1 1 0 Putative flagellar system-associated repeat NTP_transf_2 PF01909.18 gi|336477493|ref|YP_004616634.1| - 0.022 15.0 0.0 0.042 14.1 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyltransferase domain CarboxypepD_reg PF13620.1 gi|336477493|ref|YP_004616634.1| - 0.037 14.0 0.3 0.83 9.7 0.0 2.6 1 1 1 3 3 3 0 Carboxypeptidase regulatory-like domain Cadherin-like PF12733.2 gi|336477493|ref|YP_004616634.1| - 0.17 12.2 1.6 17 5.7 0.8 2.6 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain OCD_Mu_crystall PF02423.10 gi|336477494|ref|YP_004616635.1| - 1.6e-100 335.8 0.4 1.8e-100 335.7 0.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|336477494|ref|YP_004616635.1| - 0.052 13.6 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF434 PF04256.7 gi|336477495|ref|YP_004616636.1| - 5.4e-19 67.3 0.1 1.1e-18 66.3 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF434) RimK PF08443.6 gi|336477496|ref|YP_004616637.1| - 6e-34 117.1 0.0 1.1e-33 116.2 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336477496|ref|YP_004616637.1| - 7.2e-14 51.9 0.0 1.1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|336477496|ref|YP_004616637.1| - 1.3e-12 47.2 0.1 2.8e-12 46.1 0.1 1.5 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336477496|ref|YP_004616637.1| - 3.7e-11 42.3 0.0 5.3e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|336477496|ref|YP_004616637.1| - 3.5e-07 30.2 0.0 1.2e-06 28.4 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CP_ATPgrasp_1 PF04174.8 gi|336477496|ref|YP_004616637.1| - 3.5e-05 22.5 0.0 0.031 12.9 0.0 2.1 2 0 0 2 2 2 2 A circularly permuted ATPgrasp ATPgrasp_YheCD PF14398.1 gi|336477496|ref|YP_004616637.1| - 0.0025 16.6 0.0 0.017 13.9 0.0 2.1 2 0 0 2 2 2 1 YheC/D like ATP-grasp GARS_A PF01071.14 gi|336477496|ref|YP_004616637.1| - 0.06 12.9 0.0 5.1 6.6 0.0 2.3 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TTL PF03133.10 gi|336477496|ref|YP_004616637.1| - 0.12 11.3 0.2 3 6.6 0.1 2.6 2 1 0 2 2 2 0 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.1 gi|336477496|ref|YP_004616637.1| - 0.12 11.4 0.0 1.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp PTH2 PF01981.11 gi|336477497|ref|YP_004616638.1| - 6.2e-44 148.3 0.4 6.9e-44 148.2 0.3 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.15 gi|336477497|ref|YP_004616638.1| - 0.022 14.4 1.1 0.072 12.7 0.1 1.8 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3480 PF11979.3 gi|336477497|ref|YP_004616638.1| - 0.1 11.2 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3480) Transglut_core PF01841.14 gi|336477498|ref|YP_004616639.1| - 1.6e-07 31.5 0.0 3.9e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|336477498|ref|YP_004616639.1| - 0.065 12.5 0.0 0.11 11.8 0.0 1.4 1 1 0 1 1 1 0 Transglutaminase-like domain DUF3755 PF12579.3 gi|336477498|ref|YP_004616639.1| - 0.32 10.4 1.3 26 4.3 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) TruD PF01142.13 gi|336477499|ref|YP_004616640.1| - 3.7e-112 374.7 0.0 4.4e-112 374.4 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) CTP_synth_N PF06418.9 gi|336477500|ref|YP_004616641.1| - 3.5e-126 419.9 1.2 3.5e-126 419.9 0.9 1.4 2 0 0 2 2 2 1 CTP synthase N-terminus GATase PF00117.23 gi|336477500|ref|YP_004616641.1| - 1.3e-54 184.6 0.0 2.7e-54 183.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|336477500|ref|YP_004616641.1| - 4.7e-09 35.9 0.0 9.2e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|336477500|ref|YP_004616641.1| - 1.7e-06 27.6 0.0 4.6e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 Transket_pyr PF02779.19 gi|336477500|ref|YP_004616641.1| - 0.055 12.9 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain DUF4229 PF14012.1 gi|336477501|ref|YP_004616642.1| - 3.8 7.4 7.5 5.9 6.8 5.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Trm112p PF03966.11 gi|336477502|ref|YP_004616643.1| - 1.3e-09 38.2 0.9 2.4e-09 37.4 0.6 1.5 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.1 gi|336477502|ref|YP_004616643.1| - 0.00029 21.0 0.2 0.00033 20.9 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|336477502|ref|YP_004616643.1| - 0.01 15.8 0.8 0.025 14.6 0.6 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-C4_Topoisom PF01396.14 gi|336477502|ref|YP_004616643.1| - 0.035 13.6 0.9 0.55 9.7 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Elf1 PF05129.8 gi|336477502|ref|YP_004616643.1| - 0.047 13.3 0.0 0.051 13.2 0.0 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-UDP PF14569.1 gi|336477502|ref|YP_004616643.1| - 0.057 13.1 0.1 0.11 12.2 0.1 1.6 1 1 0 1 1 1 0 Zinc-binding RING-finger A2L_zn_ribbon PF08792.5 gi|336477502|ref|YP_004616643.1| - 0.071 12.5 0.6 0.45 10.0 0.4 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Cys_rich_KTR PF14205.1 gi|336477502|ref|YP_004616643.1| - 0.082 12.3 2.8 0.37 10.2 2.0 1.8 1 1 0 1 1 1 0 Cysteine-rich KTR CK_II_beta PF01214.13 gi|336477502|ref|YP_004616643.1| - 0.11 11.9 0.2 0.12 11.8 0.1 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit DZR PF12773.2 gi|336477502|ref|YP_004616643.1| - 0.19 11.6 0.9 0.66 9.8 0.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|336477502|ref|YP_004616643.1| - 0.23 11.2 2.2 2.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.7 gi|336477502|ref|YP_004616643.1| - 0.26 10.6 3.5 1.1 8.6 2.4 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|336477502|ref|YP_004616643.1| - 0.26 11.2 2.6 9.1 6.3 0.2 2.2 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_4 PF13717.1 gi|336477502|ref|YP_004616643.1| - 0.26 10.9 1.5 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336477502|ref|YP_004616643.1| - 0.29 10.7 1.6 1.5 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|336477502|ref|YP_004616643.1| - 0.34 10.5 2.1 0.95 9.1 1.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) Nudix_N_2 PF14803.1 gi|336477502|ref|YP_004616643.1| - 0.97 9.1 3.2 17 5.1 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-RING_4 PF14570.1 gi|336477502|ref|YP_004616643.1| - 1.2 8.7 4.9 1.5 8.5 0.2 2.1 1 1 0 2 2 2 0 RING/Ubox like zinc-binding domain DNA_ligase_ZBD PF03119.11 gi|336477502|ref|YP_004616643.1| - 2.2 8.0 7.0 1.7 8.4 0.7 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RNA_POL_M_15KD PF02150.11 gi|336477502|ref|YP_004616643.1| - 5.2 6.8 6.1 5.6 6.7 2.4 2.4 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit HisKA_2 PF07568.7 gi|336477503|ref|YP_004616644.1| - 3.6e-29 100.4 2.8 3.6e-29 100.4 1.9 2.3 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.21 gi|336477503|ref|YP_004616644.1| - 3.1e-12 46.2 0.1 5.8e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|336477503|ref|YP_004616644.1| - 2.8e-11 43.6 0.0 5.9e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|336477503|ref|YP_004616644.1| - 1.6e-10 41.2 0.3 0.00029 21.1 0.0 3.2 3 0 0 3 3 3 2 PAS domain HWE_HK PF07536.9 gi|336477503|ref|YP_004616644.1| - 9.4e-08 32.3 0.2 6.9e-07 29.6 0.2 2.2 2 0 0 2 2 2 1 HWE histidine kinase PAS_8 PF13188.1 gi|336477503|ref|YP_004616644.1| - 1.5e-07 31.0 0.1 0.017 14.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|336477503|ref|YP_004616644.1| - 9.7e-06 26.1 0.0 4.1e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|336477503|ref|YP_004616644.1| - 6.1e-05 23.0 0.0 0.54 10.3 0.0 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|336477503|ref|YP_004616644.1| - 0.00024 20.8 0.0 0.00054 19.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|336477503|ref|YP_004616644.1| - 0.00039 20.1 0.0 0.12 12.1 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|336477503|ref|YP_004616644.1| - 0.055 13.5 0.0 0.94 9.6 0.0 2.5 2 0 0 2 2 2 0 PAS fold PulG PF11773.3 gi|336477503|ref|YP_004616644.1| - 1.4 8.6 7.7 0.57 9.9 0.2 3.7 4 0 0 4 4 4 0 Type II secretory pathway pseudopilin Gate PF07670.9 gi|336477504|ref|YP_004616645.1| - 9.4e-09 35.1 23.8 8.7e-05 22.3 3.3 2.8 2 2 0 2 2 2 2 Nucleoside recognition FpoO PF10621.4 gi|336477505|ref|YP_004616646.1| - 3.9e-28 97.9 1.1 6.8e-21 74.5 0.1 2.0 1 1 0 2 2 2 2 F420H2 dehydrogenase subunit FpoO DZR PF12773.2 gi|336477505|ref|YP_004616646.1| - 0.014 15.2 4.7 1 9.2 2.1 2.9 1 1 1 2 2 2 0 Double zinc ribbon zf-C4_ClpX PF06689.8 gi|336477505|ref|YP_004616646.1| - 0.079 12.4 5.9 0.29 10.6 0.4 2.6 3 0 0 3 3 3 0 ClpX C4-type zinc finger DUF3716 PF12511.3 gi|336477505|ref|YP_004616646.1| - 0.11 12.0 1.9 0.17 11.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3716) zf-C4pol PF14260.1 gi|336477505|ref|YP_004616646.1| - 0.26 11.2 5.4 1.6 8.7 0.3 2.3 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-AD PF07776.10 gi|336477505|ref|YP_004616646.1| - 0.27 11.2 3.8 0.68 9.9 2.7 1.7 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) Fer4_13 PF13370.1 gi|336477505|ref|YP_004616646.1| - 1.6 9.1 5.5 7.1 7.0 0.1 3.2 3 1 0 3 3 3 0 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.6 gi|336477505|ref|YP_004616646.1| - 2.1 8.0 6.7 1.3 8.7 0.2 2.9 4 0 0 4 4 4 0 Putative transposase DNA-binding domain DUF4428 PF14471.1 gi|336477505|ref|YP_004616646.1| - 4.2 7.2 5.5 63 3.4 0.0 3.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) Oxidored_q1 PF00361.15 gi|336477506|ref|YP_004616647.1| - 2.2e-67 227.1 24.4 2.2e-67 227.1 16.9 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|336477506|ref|YP_004616647.1| - 0.0065 16.0 1.3 0.0065 16.0 0.9 3.4 3 1 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|336477507|ref|YP_004616648.1| - 1.4e-63 214.7 37.4 1.4e-63 214.7 26.0 2.6 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|336477507|ref|YP_004616648.1| - 0.00015 21.6 4.2 0.00015 21.6 2.9 5.2 2 1 1 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|336477508|ref|YP_004616649.1| - 2.2e-76 256.7 20.3 2.2e-76 256.7 14.1 3.4 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|336477508|ref|YP_004616649.1| - 1.1e-13 50.4 2.7 1.2e-13 50.4 0.3 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|336477508|ref|YP_004616649.1| - 1.2e-05 25.0 2.1 1.2e-05 25.0 1.5 2.6 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q2 PF00420.19 gi|336477509|ref|YP_004616650.1| - 2.4e-24 84.7 9.1 2.7e-24 84.5 6.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Epiglycanin_C PF14654.1 gi|336477509|ref|YP_004616650.1| - 0.29 11.1 2.6 0.31 11.0 0.2 1.9 1 1 1 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region Oxidored_q3 PF00499.15 gi|336477510|ref|YP_004616651.1| - 0.0029 17.3 2.8 0.0037 17.0 1.9 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q3 PF00499.15 gi|336477511|ref|YP_004616652.1| - 1.4e-16 60.5 14.0 1.4e-16 60.5 9.7 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2721 PF11026.3 gi|336477511|ref|YP_004616652.1| - 0.22 11.1 13.9 0.12 12.0 8.5 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) DUF4040 PF13244.1 gi|336477511|ref|YP_004616652.1| - 0.77 9.7 14.2 1 9.4 9.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4040) Claudin_2 PF13903.1 gi|336477511|ref|YP_004616652.1| - 2.5 7.7 13.2 2 8.0 8.4 1.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Fer4 PF00037.22 gi|336477512|ref|YP_004616653.1| - 4.2e-15 54.6 11.8 1.1e-08 34.3 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336477512|ref|YP_004616653.1| - 7.9e-11 41.5 20.5 1.8e-09 37.2 7.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477512|ref|YP_004616653.1| - 1e-10 41.8 9.0 1e-10 41.8 6.2 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477512|ref|YP_004616653.1| - 1.7e-09 37.7 9.1 4e-09 36.6 6.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477512|ref|YP_004616653.1| - 5.7e-09 35.8 7.2 1.1e-08 34.9 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477512|ref|YP_004616653.1| - 1.4e-08 34.1 12.6 7.6e-05 22.3 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477512|ref|YP_004616653.1| - 4.3e-08 32.8 8.7 5.5e-08 32.5 5.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477512|ref|YP_004616653.1| - 7.4e-08 33.0 10.4 0.0003 21.4 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|336477512|ref|YP_004616653.1| - 2.6e-07 30.1 11.8 1.9e-05 24.2 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336477512|ref|YP_004616653.1| - 6.9e-06 26.4 10.1 0.00043 20.6 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336477512|ref|YP_004616653.1| - 1.7e-05 25.0 19.9 0.00047 20.4 6.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336477512|ref|YP_004616653.1| - 0.00012 22.1 13.1 0.0015 18.6 1.7 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336477512|ref|YP_004616653.1| - 0.00015 22.2 10.5 0.00064 20.2 0.5 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336477512|ref|YP_004616653.1| - 0.00022 21.5 16.6 0.041 14.4 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336477512|ref|YP_004616653.1| - 0.0016 18.8 11.4 0.0032 17.8 1.7 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain NADHdh PF00146.16 gi|336477513|ref|YP_004616654.1| - 8.8e-91 304.1 23.8 1.1e-90 303.8 16.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase NIPSNAP PF07978.8 gi|336477513|ref|YP_004616654.1| - 0.092 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 NIPSNAP Complex1_49kDa PF00346.14 gi|336477514|ref|YP_004616655.1| - 6.6e-70 235.2 0.0 5.2e-48 163.4 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|336477514|ref|YP_004616655.1| - 0.0066 15.2 0.0 0.0098 14.7 0.0 1.2 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|336477515|ref|YP_004616656.1| - 4.4e-32 110.3 0.1 5.9e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|336477516|ref|YP_004616657.1| - 1.4e-22 79.6 0.0 2.2e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|336477516|ref|YP_004616657.1| - 0.055 12.4 0.0 0.12 11.3 0.0 1.5 2 0 0 2 2 2 0 NgoFVII restriction endonuclease Oxidored_q4 PF00507.14 gi|336477517|ref|YP_004616658.1| - 2.4e-26 91.4 8.5 3.1e-26 91.1 5.9 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Helicase_Sgs1 PF11408.3 gi|336477517|ref|YP_004616658.1| - 0.14 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Sgs1 RecQ helicase NfeD PF01957.13 gi|336477517|ref|YP_004616658.1| - 3.1 7.9 6.8 2.1 8.5 2.1 2.0 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF3671 PF12420.3 gi|336477517|ref|YP_004616658.1| - 4.4 7.3 13.4 0.86 9.6 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function Fer4 PF00037.22 gi|336477518|ref|YP_004616659.1| - 4.8e-12 44.9 14.9 2.3e-06 26.9 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336477518|ref|YP_004616659.1| - 1.4e-08 34.3 13.4 0.00028 20.9 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336477518|ref|YP_004616659.1| - 1.6e-07 30.9 14.4 0.0013 18.5 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336477518|ref|YP_004616659.1| - 2.3e-07 31.0 13.9 3.1e-06 27.4 9.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477518|ref|YP_004616659.1| - 9.5e-07 29.4 11.4 0.0031 18.2 2.1 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|336477518|ref|YP_004616659.1| - 2.6e-06 27.6 15.1 2e-05 24.7 10.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336477518|ref|YP_004616659.1| - 2.8e-06 27.0 11.6 4.7e-06 26.3 8.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477518|ref|YP_004616659.1| - 6.1e-05 22.7 14.0 8.7e-05 22.2 9.7 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477518|ref|YP_004616659.1| - 7.2e-05 22.7 13.6 0.0014 18.5 9.5 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336477518|ref|YP_004616659.1| - 9.9e-05 22.6 18.0 0.025 15.1 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336477518|ref|YP_004616659.1| - 0.00014 22.2 15.2 0.016 15.6 3.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336477518|ref|YP_004616659.1| - 0.00017 21.8 15.3 0.0079 16.5 2.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477518|ref|YP_004616659.1| - 0.00078 19.2 20.3 0.0041 16.9 3.8 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336477518|ref|YP_004616659.1| - 0.034 14.7 16.1 0.27 11.8 3.0 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|336477518|ref|YP_004616659.1| - 0.044 14.1 12.0 0.23 11.8 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain RRN7 PF11781.3 gi|336477518|ref|YP_004616659.1| - 2.7 7.5 10.2 2.9 7.4 2.3 2.5 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 MSSP PF03940.8 gi|336477518|ref|YP_004616659.1| - 6.8 6.1 14.3 25 4.3 9.9 1.8 1 1 0 1 1 1 0 Male specific sperm protein NAD_binding_8 PF13450.1 gi|336477519|ref|YP_004616660.1| - 7.9e-14 51.4 0.5 3.5e-13 49.3 0.1 2.3 2 1 1 3 3 3 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|336477519|ref|YP_004616660.1| - 7e-11 41.8 0.0 8e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|336477519|ref|YP_004616660.1| - 2.9e-08 33.0 0.2 0.0025 16.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336477519|ref|YP_004616660.1| - 4.2e-06 25.8 0.0 0.0015 17.5 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|336477519|ref|YP_004616660.1| - 6e-05 21.6 0.1 0.031 12.7 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|336477519|ref|YP_004616660.1| - 0.00023 21.4 0.3 0.029 14.7 0.1 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336477519|ref|YP_004616660.1| - 0.00061 19.9 0.0 0.029 14.4 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336477519|ref|YP_004616660.1| - 0.001 19.0 0.7 0.0032 17.3 0.0 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|336477519|ref|YP_004616660.1| - 0.0055 16.4 1.4 0.83 9.4 0.1 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|336477519|ref|YP_004616660.1| - 0.015 14.4 0.2 0.032 13.3 0.1 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|336477519|ref|YP_004616660.1| - 0.02 13.8 0.3 0.048 12.5 0.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|336477519|ref|YP_004616660.1| - 0.03 13.3 0.2 0.079 11.9 0.1 1.6 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|336477519|ref|YP_004616660.1| - 0.1 11.6 0.4 0.34 9.9 0.1 1.8 2 0 0 2 2 2 0 Thi4 family Radical_SAM PF04055.16 gi|336477520|ref|YP_004616661.1| - 4.1e-15 56.3 0.0 7.8e-15 55.4 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|336477521|ref|YP_004616662.1| - 3.1e-17 63.2 0.1 4.6e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HTH_30 PF13556.1 gi|336477521|ref|YP_004616662.1| - 0.036 13.6 1.1 1.5 8.4 0.1 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Fer4_14 PF13394.1 gi|336477521|ref|YP_004616662.1| - 0.072 13.1 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain KdpD PF02702.12 gi|336477521|ref|YP_004616662.1| - 0.084 11.9 0.1 0.14 11.2 0.1 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain CofC PF01983.11 gi|336477522|ref|YP_004616663.1| - 6.6e-49 165.8 0.1 8e-49 165.5 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|336477522|ref|YP_004616663.1| - 9.8e-05 22.4 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2758 PF10957.3 gi|336477522|ref|YP_004616663.1| - 0.059 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2758) FAD_binding_3 PF01494.14 gi|336477523|ref|YP_004616664.1| - 5.4e-17 61.8 2.4 2.2e-09 36.8 0.3 2.9 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|336477523|ref|YP_004616664.1| - 9.2e-12 44.5 3.6 2.7e-05 23.2 0.4 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336477523|ref|YP_004616664.1| - 7.1e-11 41.5 4.0 6.6e-07 28.5 0.2 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|336477523|ref|YP_004616664.1| - 1.3e-10 40.9 4.9 4.3e-10 39.2 3.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336477523|ref|YP_004616664.1| - 1e-09 37.3 0.0 2.8e-09 35.9 0.0 1.7 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.9 gi|336477523|ref|YP_004616664.1| - 1.8e-09 36.7 0.1 5.8e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|336477523|ref|YP_004616664.1| - 3.3e-06 27.0 0.0 8e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|336477523|ref|YP_004616664.1| - 4.5e-06 25.8 1.4 0.001 18.0 0.5 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|336477523|ref|YP_004616664.1| - 1.3e-05 24.4 0.4 6.1e-05 22.2 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|336477523|ref|YP_004616664.1| - 1.4e-05 25.0 5.7 1.4e-05 25.0 3.9 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336477523|ref|YP_004616664.1| - 3.7e-05 22.7 1.5 0.00012 21.0 1.0 1.9 1 1 1 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|336477523|ref|YP_004616664.1| - 0.016 15.2 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336477523|ref|YP_004616664.1| - 0.017 15.5 1.5 0.3 11.5 0.1 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|336477523|ref|YP_004616664.1| - 0.017 14.7 0.1 0.041 13.5 0.1 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.5 gi|336477523|ref|YP_004616664.1| - 0.038 12.8 0.3 0.089 11.6 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase GDI PF00996.13 gi|336477523|ref|YP_004616664.1| - 0.045 12.0 0.0 0.095 10.9 0.0 1.5 1 0 0 1 1 1 0 GDP dissociation inhibitor Cupin_2 PF07883.6 gi|336477525|ref|YP_004616666.1| - 1.7e-12 46.6 0.1 2.5e-12 46.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|336477525|ref|YP_004616666.1| - 0.00066 19.3 0.0 0.00078 19.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|336477525|ref|YP_004616666.1| - 0.001 18.5 0.1 0.0015 18.0 0.0 1.4 1 1 0 1 1 1 1 Cupin Pirin_C PF05726.8 gi|336477525|ref|YP_004616666.1| - 0.018 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain MannoseP_isomer PF01050.13 gi|336477525|ref|YP_004616666.1| - 0.025 14.1 0.1 0.031 13.8 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Inhibitor_I24 PF10465.4 gi|336477525|ref|YP_004616666.1| - 0.077 12.7 0.0 0.091 12.4 0.0 1.1 1 0 0 1 1 1 0 PinA peptidase inhibitor TrkH PF02386.11 gi|336477526|ref|YP_004616667.1| - 1.6e-50 171.6 20.5 1.6e-50 171.6 14.2 2.2 2 0 0 2 2 2 2 Cation transport protein PufQ PF05398.6 gi|336477526|ref|YP_004616667.1| - 0.034 14.1 0.6 0.16 12.0 0.1 2.3 2 0 0 2 2 2 0 PufQ cytochrome subunit TrkH PF02386.11 gi|336477527|ref|YP_004616668.1| - 9.8e-58 195.4 16.6 9.8e-58 195.4 11.5 2.2 2 0 0 2 2 2 2 Cation transport protein Peptidase_M50 PF02163.17 gi|336477527|ref|YP_004616668.1| - 0.78 8.6 7.0 1.4 7.8 1.4 3.2 2 1 0 2 2 2 0 Peptidase family M50 TrkA_N PF02254.13 gi|336477528|ref|YP_004616669.1| - 1.3e-47 160.5 7.4 5.6e-26 90.8 0.3 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|336477528|ref|YP_004616669.1| - 2.3e-33 113.5 1.9 1.2e-15 56.8 0.0 3.3 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|336477528|ref|YP_004616669.1| - 8.9e-11 41.9 4.0 2.3e-05 24.5 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|336477528|ref|YP_004616669.1| - 9.3e-08 32.2 1.1 0.00028 20.9 0.0 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.9 gi|336477528|ref|YP_004616669.1| - 1.4e-07 31.6 1.7 0.0021 17.9 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|336477528|ref|YP_004616669.1| - 2.2e-07 30.4 2.7 0.0052 16.1 0.2 2.9 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|336477528|ref|YP_004616669.1| - 4.2e-06 25.9 4.3 0.007 15.3 0.7 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|336477528|ref|YP_004616669.1| - 4.2e-06 26.5 1.0 0.12 12.1 0.0 2.8 2 1 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|336477528|ref|YP_004616669.1| - 5e-05 23.0 0.8 0.21 11.2 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ldh_1_N PF00056.18 gi|336477528|ref|YP_004616669.1| - 9.3e-05 22.2 9.6 0.015 15.1 0.3 2.8 3 0 0 3 3 3 2 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336477528|ref|YP_004616669.1| - 0.0001 22.6 2.0 0.38 11.2 0.1 3.2 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|336477528|ref|YP_004616669.1| - 0.00012 21.2 0.1 0.36 9.8 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain XdhC_C PF13478.1 gi|336477528|ref|YP_004616669.1| - 0.00015 22.1 0.3 0.087 13.1 0.0 2.6 2 1 0 2 2 2 1 XdhC Rossmann domain ApbA PF02558.11 gi|336477528|ref|YP_004616669.1| - 0.00018 20.9 0.4 0.095 12.1 0.0 2.5 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|336477528|ref|YP_004616669.1| - 0.0011 19.3 0.1 0.65 10.4 0.0 3.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|336477528|ref|YP_004616669.1| - 0.0016 18.2 3.4 0.64 9.8 0.0 3.4 2 1 1 3 3 3 1 ThiF family NAD_binding_2 PF03446.10 gi|336477528|ref|YP_004616669.1| - 0.0043 16.9 1.1 2.4 7.9 0.1 2.8 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_8 PF13450.1 gi|336477528|ref|YP_004616669.1| - 0.0085 16.0 0.1 0.13 12.3 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ADH_zinc_N PF00107.21 gi|336477528|ref|YP_004616669.1| - 0.0098 15.4 2.1 0.066 12.7 0.1 3.2 3 1 0 3 3 3 1 Zinc-binding dehydrogenase Methyltransf_31 PF13847.1 gi|336477528|ref|YP_004616669.1| - 0.022 14.3 0.4 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Trp_halogenase PF04820.9 gi|336477528|ref|YP_004616669.1| - 0.031 12.9 0.1 0.76 8.3 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|336477528|ref|YP_004616669.1| - 0.034 13.9 0.1 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding DAO PF01266.19 gi|336477528|ref|YP_004616669.1| - 0.041 12.7 0.1 1.4 7.7 0.0 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.17 gi|336477528|ref|YP_004616669.1| - 0.058 13.9 0.4 12 6.4 0.0 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold CTDII PF01556.13 gi|336477529|ref|YP_004616670.1| - 4.3e-33 113.0 0.7 2.7e-21 75.2 0.0 3.3 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|336477529|ref|YP_004616670.1| - 2.1e-29 101.0 4.7 3.4e-29 100.3 3.3 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|336477529|ref|YP_004616670.1| - 4.4e-16 58.6 16.2 7.7e-16 57.8 11.2 1.4 1 0 0 1 1 1 1 DnaJ central domain C1_1 PF00130.17 gi|336477529|ref|YP_004616670.1| - 0.94 9.2 5.1 0.24 11.1 0.4 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HSP70 PF00012.15 gi|336477530|ref|YP_004616671.1| - 2.2e-248 825.1 18.1 4.1e-246 817.6 12.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|336477530|ref|YP_004616671.1| - 1.9e-19 69.4 2.3 4.6e-19 68.1 1.6 1.6 1 0 0 1 1 1 1 MreB/Mbl protein FtsA PF14450.1 gi|336477530|ref|YP_004616671.1| - 0.00087 19.1 12.1 0.12 12.1 3.3 5.6 2 2 0 2 2 2 1 Cell division protein FtsA FGGY_C PF02782.11 gi|336477530|ref|YP_004616671.1| - 0.0083 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.13 gi|336477530|ref|YP_004616671.1| - 0.046 12.8 0.1 0.046 12.8 0.1 3.4 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase DUF3347 PF11827.3 gi|336477530|ref|YP_004616671.1| - 1.1 9.2 16.2 4 7.4 7.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) cwf21 PF08312.7 gi|336477530|ref|YP_004616671.1| - 1.8 8.4 9.8 4.2 7.3 1.0 4.0 4 1 1 5 5 5 0 cwf21 domain GrpE PF01025.14 gi|336477531|ref|YP_004616672.1| - 5.6e-55 185.3 1.7 6.4e-55 185.2 1.1 1.0 1 0 0 1 1 1 1 GrpE DegS PF05384.6 gi|336477531|ref|YP_004616672.1| - 0.0018 17.5 2.6 0.69 9.1 1.1 2.3 2 1 0 2 2 2 2 Sensor protein DegS GAS PF13851.1 gi|336477531|ref|YP_004616672.1| - 0.033 13.3 4.8 0.046 12.8 2.9 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding AcylCoA_dehyd_C PF12186.3 gi|336477531|ref|YP_004616672.1| - 0.063 13.1 1.4 1 9.2 0.1 2.3 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase C terminal Occludin_ELL PF07303.8 gi|336477531|ref|YP_004616672.1| - 0.12 13.0 2.8 0.22 12.2 0.6 2.0 1 1 1 2 2 2 0 Occludin homology domain IncA PF04156.9 gi|336477531|ref|YP_004616672.1| - 0.51 9.9 2.5 0.74 9.3 1.8 1.3 1 0 0 1 1 1 0 IncA protein Acyl_transf_3 PF01757.17 gi|336477532|ref|YP_004616673.1| - 0.0017 17.2 8.3 0.002 17.0 5.8 1.0 1 0 0 1 1 1 1 Acyltransferase family BCHF PF07284.6 gi|336477532|ref|YP_004616673.1| - 0.036 13.9 4.0 0.092 12.5 1.0 2.1 2 0 0 2 2 2 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) Keratin_assoc PF09775.4 gi|336477532|ref|YP_004616673.1| - 1.7 8.1 10.2 0.29 10.6 4.2 1.7 1 1 1 2 2 2 0 Keratinocyte-associated protein 2 DUF4131 PF13567.1 gi|336477532|ref|YP_004616673.1| - 2 7.7 5.1 3.2 7.1 3.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3317 PF11779.3 gi|336477532|ref|YP_004616673.1| - 4.9 6.6 6.4 5 6.6 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3317) TctB PF07331.6 gi|336477532|ref|YP_004616673.1| - 6.6 6.3 15.4 0.61 9.7 5.7 2.0 1 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family ATP-grasp_3 PF02655.9 gi|336477533|ref|YP_004616674.1| - 8e-34 116.8 0.0 1.1e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336477533|ref|YP_004616674.1| - 0.00088 19.0 0.0 0.0049 16.6 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336477533|ref|YP_004616674.1| - 0.0035 16.1 0.0 0.16 10.6 0.0 2.7 3 0 0 3 3 3 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|336477533|ref|YP_004616674.1| - 0.072 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus Hydantoinase_A PF01968.13 gi|336477534|ref|YP_004616675.1| - 4e-17 62.2 0.4 8.1e-15 54.6 0.1 2.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase MutL PF13941.1 gi|336477534|ref|YP_004616675.1| - 1.7e-05 23.3 0.0 0.0042 15.4 0.0 2.2 2 0 0 2 2 2 2 MutL protein DeoRC PF00455.17 gi|336477534|ref|YP_004616675.1| - 3.7e-05 23.4 0.1 0.18 11.4 0.0 2.3 2 0 0 2 2 2 2 DeoR C terminal sensor domain FtsA PF14450.1 gi|336477534|ref|YP_004616675.1| - 0.02 14.7 3.4 1.6 8.5 0.0 3.2 3 1 0 3 3 3 0 Cell division protein FtsA Hydant_A_N PF05378.8 gi|336477534|ref|YP_004616675.1| - 0.042 13.3 0.2 1.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region AA_kinase PF00696.23 gi|336477535|ref|YP_004616676.1| - 2.6e-13 50.0 0.0 2.8e-11 43.4 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family DUF1610 PF07754.6 gi|336477536|ref|YP_004616677.1| - 5.5e-10 39.1 17.2 1.1e-06 28.6 1.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|336477536|ref|YP_004616677.1| - 0.0035 17.1 12.3 0.12 12.2 8.6 2.3 1 1 0 1 1 1 1 Double zinc ribbon tRNA-synt_1g PF09334.6 gi|336477536|ref|YP_004616677.1| - 0.013 14.1 1.6 0.013 14.1 1.1 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-ribbon_3 PF13248.1 gi|336477536|ref|YP_004616677.1| - 0.063 12.5 14.4 0.56 9.4 0.6 3.4 3 1 0 3 3 3 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|336477536|ref|YP_004616677.1| - 0.076 12.7 10.1 0.27 10.9 0.4 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Tnp_zf-ribbon_2 PF13842.1 gi|336477536|ref|YP_004616677.1| - 0.093 13.1 10.7 0.26 11.7 1.6 2.7 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zinc-ribbons_6 PF07191.7 gi|336477536|ref|YP_004616677.1| - 0.14 11.9 9.3 0.29 10.9 6.4 1.6 1 1 0 1 1 1 0 zinc-ribbons DUF1272 PF06906.6 gi|336477536|ref|YP_004616677.1| - 0.21 11.4 10.6 1.4 8.8 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) PolC_DP2 PF03833.8 gi|336477536|ref|YP_004616677.1| - 0.22 9.1 6.1 0.22 9.1 4.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|336477536|ref|YP_004616677.1| - 0.38 10.4 10.7 0.32 10.6 4.4 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Opy2 PF09463.5 gi|336477536|ref|YP_004616677.1| - 0.65 10.1 13.5 0.43 10.7 2.1 3.0 3 0 0 3 3 3 0 Opy2 protein zf-B_box PF00643.19 gi|336477536|ref|YP_004616677.1| - 0.66 9.9 12.9 0.52 10.2 3.0 2.8 2 1 1 3 3 3 0 B-box zinc finger Zn_ribbon_2 PF12674.2 gi|336477536|ref|YP_004616677.1| - 0.69 10.2 8.5 9.3 6.6 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain LIM PF00412.17 gi|336477536|ref|YP_004616677.1| - 0.74 9.9 8.2 12 6.0 5.7 2.0 1 1 1 2 2 2 0 LIM domain zf-RING_5 PF14634.1 gi|336477536|ref|YP_004616677.1| - 0.92 9.2 11.0 1.6 8.5 2.0 2.4 2 1 0 2 2 2 0 zinc-RING finger domain DUF2039 PF10217.4 gi|336477536|ref|YP_004616677.1| - 1.1 9.2 6.9 0.19 11.7 2.5 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Cript PF10235.4 gi|336477536|ref|YP_004616677.1| - 1.1 9.6 11.4 3.6 8.0 1.5 2.3 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT TF_Zn_Ribbon PF08271.7 gi|336477536|ref|YP_004616677.1| - 1.2 8.5 10.8 10 5.5 6.0 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|336477536|ref|YP_004616677.1| - 1.4 9.3 0.1 1.4 9.3 0.1 3.2 3 1 1 4 4 4 0 Zinc-finger double domain zf-C3HC4 PF00097.20 gi|336477536|ref|YP_004616677.1| - 2 8.1 11.8 1.8 8.2 0.9 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_4 PF15227.1 gi|336477536|ref|YP_004616677.1| - 2 8.3 10.0 0.91 9.4 0.6 2.3 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING Zn_Tnp_IS91 PF14319.1 gi|336477536|ref|YP_004616677.1| - 2.1 7.8 9.5 3 7.4 6.6 1.3 1 1 0 1 1 1 0 Transposase zinc-binding domain C1_4 PF07975.7 gi|336477536|ref|YP_004616677.1| - 2.6 8.1 11.5 83 3.2 8.0 2.2 1 1 0 1 1 1 0 TFIIH C1-like domain Acetone_carb_G PF08882.6 gi|336477536|ref|YP_004616677.1| - 2.8 8.0 5.9 5 7.1 0.7 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit C1_1 PF00130.17 gi|336477536|ref|YP_004616677.1| - 2.9 7.7 9.2 1.4e+02 2.2 6.4 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-LITAF-like PF10601.4 gi|336477536|ref|YP_004616677.1| - 3 7.7 10.7 4 7.3 0.2 3.0 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Spt4 PF06093.8 gi|336477536|ref|YP_004616677.1| - 3.8 7.4 8.2 26 4.8 5.7 1.9 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger UPF0547 PF10571.4 gi|336477536|ref|YP_004616677.1| - 4.1 7.1 10.1 2.2 8.0 4.1 2.7 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HC5HC2H PF13771.1 gi|336477536|ref|YP_004616677.1| - 4.2 7.5 7.4 6.4 6.9 5.1 1.4 1 1 0 1 1 1 0 PHD-like zinc-binding domain zinc_ribbon_2 PF13240.1 gi|336477536|ref|YP_004616677.1| - 4.2 6.9 18.7 1.2 8.7 4.1 3.4 2 2 1 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|336477536|ref|YP_004616677.1| - 5.1 6.9 11.0 3.1 7.6 1.3 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TerY-C PF15616.1 gi|336477536|ref|YP_004616677.1| - 5.5 6.9 9.8 9.4 6.1 6.8 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain Cys_rich_CPXG PF14255.1 gi|336477536|ref|YP_004616677.1| - 6.1 6.7 11.3 0.54 10.1 4.6 1.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_4 PF14570.1 gi|336477536|ref|YP_004616677.1| - 6.2 6.4 11.0 16 5.1 7.6 2.0 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C2H2_4 PF13894.1 gi|336477536|ref|YP_004616677.1| - 7.1 7.2 14.9 8.4 6.9 1.2 3.1 3 1 0 3 3 3 0 C2H2-type zinc finger PHF5 PF03660.9 gi|336477536|ref|YP_004616677.1| - 7.7 6.6 8.6 16 5.5 6.0 1.6 1 1 0 1 1 1 0 PHF5-like protein CpXC PF14353.1 gi|336477536|ref|YP_004616677.1| - 8.1 6.4 7.5 9 6.2 1.4 2.3 1 1 1 2 2 2 0 CpXC protein zf-TFIIB PF13453.1 gi|336477536|ref|YP_004616677.1| - 8.5 5.6 15.3 6.9 5.9 0.0 3.3 2 1 0 2 2 2 0 Transcription factor zinc-finger EF1_GNE PF00736.14 gi|336477537|ref|YP_004616678.1| - 9.5e-24 82.9 0.4 1e-23 82.8 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|336477537|ref|YP_004616678.1| - 0.029 14.5 0.6 0.17 12.0 0.1 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain Yip1 PF04893.12 gi|336477538|ref|YP_004616679.1| - 0.12 11.8 8.3 0.13 11.7 5.8 1.1 1 0 0 1 1 1 0 Yip1 domain DUF4064 PF13273.1 gi|336477538|ref|YP_004616679.1| - 3.1 7.9 8.0 4.7 7.3 5.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF4342 PF14242.1 gi|336477538|ref|YP_004616679.1| - 3.2 7.6 5.9 16 5.3 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) ABC2_membrane_3 PF12698.2 gi|336477538|ref|YP_004616679.1| - 7.5 5.4 11.2 9 5.2 7.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein HATPase_c PF02518.21 gi|336477539|ref|YP_004616680.1| - 1.1e-24 86.2 0.0 9.8e-24 83.2 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336477539|ref|YP_004616680.1| - 2.4e-07 30.6 0.1 4.8e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain CHASE PF03924.8 gi|336477539|ref|YP_004616680.1| - 3.3e-06 26.4 0.0 6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 CHASE domain HATPase_c_2 PF13581.1 gi|336477539|ref|YP_004616680.1| - 6.1e-05 22.8 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336477539|ref|YP_004616680.1| - 0.0061 16.2 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|336477539|ref|YP_004616680.1| - 0.007 16.0 0.0 0.044 13.5 0.0 2.3 2 0 0 2 2 2 1 GHKL domain Pyridox_oxidase PF01243.15 gi|336477540|ref|YP_004616681.1| - 4.5e-12 45.8 0.0 7.3e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|336477540|ref|YP_004616681.1| - 2.2e-06 27.5 0.0 2.5e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|336477540|ref|YP_004616681.1| - 0.00072 19.4 0.0 0.0009 19.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF523 PF04463.7 gi|336477541|ref|YP_004616682.1| - 1e-36 125.8 0.0 1.5e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|336477541|ref|YP_004616682.1| - 1.4e-07 31.4 0.0 2.7e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF1995 PF09353.5 gi|336477541|ref|YP_004616682.1| - 0.024 14.2 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1995) Hydantoinase_B PF02538.9 gi|336477542|ref|YP_004616683.1| - 2.7e-201 669.4 0.1 2.7e-201 669.4 0.0 1.5 2 0 0 2 2 2 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|336477542|ref|YP_004616683.1| - 1.1e-112 375.8 0.3 3.4e-112 374.2 0.2 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|336477542|ref|YP_004616683.1| - 1.3e-58 197.3 0.3 1.2e-56 190.9 0.0 3.2 4 0 0 4 4 4 1 Hydantoinase/oxoprolinase N-terminal region DUF3288 PF11691.3 gi|336477542|ref|YP_004616683.1| - 0.045 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) Spore_II_R PF09551.5 gi|336477542|ref|YP_004616683.1| - 2.8 7.9 6.1 0.42 10.6 1.0 2.0 2 0 0 2 2 2 0 Stage II sporulation protein R (spore_II_R) MatE PF01554.13 gi|336477543|ref|YP_004616684.1| - 1.1e-48 164.8 46.1 5.1e-28 97.7 12.4 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|336477543|ref|YP_004616684.1| - 7e-10 38.8 31.8 6.7e-08 32.4 12.3 5.2 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|336477543|ref|YP_004616684.1| - 0.17 11.3 40.9 0.069 12.5 7.2 2.7 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein ThiI PF02568.9 gi|336477544|ref|YP_004616685.1| - 1.7e-55 187.5 0.0 2.3e-55 187.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|336477544|ref|YP_004616685.1| - 2.8e-22 79.1 0.0 1.2e-21 77.1 0.0 1.9 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|336477544|ref|YP_004616685.1| - 1.6e-05 24.3 0.0 0.056 12.7 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|336477544|ref|YP_004616685.1| - 0.001 17.6 0.0 0.0018 16.8 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|336477544|ref|YP_004616685.1| - 0.038 13.4 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase Neogenin_C PF06583.7 gi|336477544|ref|YP_004616685.1| - 0.058 12.9 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 Neogenin C-terminus Pyr_redox_2 PF07992.9 gi|336477545|ref|YP_004616686.1| - 2.8e-31 108.9 0.8 4.9e-31 108.1 0.6 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pribosyltran PF00156.22 gi|336477545|ref|YP_004616686.1| - 6e-26 90.6 1.4 1.6e-24 86.0 0.1 2.8 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pyr_redox PF00070.22 gi|336477545|ref|YP_004616686.1| - 1.1e-19 70.5 8.2 1.4e-16 60.6 0.1 4.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336477545|ref|YP_004616686.1| - 4.6e-16 58.8 0.0 9e-16 57.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|336477545|ref|YP_004616686.1| - 6.7e-16 58.9 0.5 2.5e-11 44.0 0.0 3.1 3 1 1 4 4 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336477545|ref|YP_004616686.1| - 2.5e-13 49.6 6.3 3.2e-05 23.0 0.3 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.17 gi|336477545|ref|YP_004616686.1| - 2e-08 33.5 4.2 9.2e-07 28.0 0.4 3.0 2 1 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|336477545|ref|YP_004616686.1| - 5.5e-08 31.6 6.0 0.0028 16.2 0.5 4.3 4 1 1 5 5 5 2 HI0933-like protein 3HCDH_N PF02737.13 gi|336477545|ref|YP_004616686.1| - 1e-07 31.7 3.1 0.0019 17.9 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|336477545|ref|YP_004616686.1| - 8.7e-07 28.8 2.7 3.7e-05 23.6 0.2 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336477545|ref|YP_004616686.1| - 1.6e-05 23.9 2.6 1.6e-05 23.9 1.8 2.5 3 1 1 4 4 4 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|336477545|ref|YP_004616686.1| - 2.1e-05 24.1 0.7 0.049 13.1 0.0 3.3 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|336477545|ref|YP_004616686.1| - 6.4e-05 22.7 0.2 0.43 10.3 0.0 3.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding F420_oxidored PF03807.12 gi|336477545|ref|YP_004616686.1| - 6.9e-05 23.2 0.8 0.2 12.0 0.0 3.5 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|336477545|ref|YP_004616686.1| - 9.2e-05 21.6 0.1 0.0084 15.2 0.1 2.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UPRTase PF14681.1 gi|336477545|ref|YP_004616686.1| - 9.9e-05 21.6 0.0 0.0002 20.6 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336477545|ref|YP_004616686.1| - 0.00015 21.1 0.0 0.0042 16.4 0.0 2.5 2 0 0 2 2 2 1 Phosphoribosyl transferase Thi4 PF01946.12 gi|336477545|ref|YP_004616686.1| - 0.0023 17.0 0.1 0.015 14.4 0.1 2.4 3 0 0 3 3 2 1 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|336477545|ref|YP_004616686.1| - 0.0028 17.0 1.8 0.54 9.6 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|336477545|ref|YP_004616686.1| - 0.0033 16.3 3.4 0.022 13.6 0.4 2.5 2 1 0 3 3 3 1 Lycopene cyclase protein NAD_binding_2 PF03446.10 gi|336477545|ref|YP_004616686.1| - 0.0039 17.0 0.6 0.73 9.6 0.1 2.8 3 0 0 3 3 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|336477545|ref|YP_004616686.1| - 0.0062 15.9 0.4 0.2 11.1 0.2 2.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|336477545|ref|YP_004616686.1| - 0.0096 15.6 0.1 3.6 7.2 0.0 2.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|336477545|ref|YP_004616686.1| - 0.01 16.1 0.1 1.5 9.1 0.0 2.7 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|336477545|ref|YP_004616686.1| - 0.011 15.9 1.5 0.93 9.7 0.1 2.8 2 1 1 3 3 2 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|336477545|ref|YP_004616686.1| - 0.012 15.7 0.2 0.9 9.6 0.1 2.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|336477545|ref|YP_004616686.1| - 0.016 15.2 2.8 0.81 9.7 0.1 3.6 4 0 0 4 4 3 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|336477545|ref|YP_004616686.1| - 0.026 13.5 1.4 0.12 11.4 0.2 2.6 3 0 0 3 3 3 0 FAD binding domain NAD_binding_10 PF13460.1 gi|336477545|ref|YP_004616686.1| - 0.05 13.5 0.9 6.9 6.6 0.0 2.6 2 0 0 2 2 2 0 NADH(P)-binding CPSase_L_chain PF00289.17 gi|336477545|ref|YP_004616686.1| - 0.42 10.7 3.0 13 5.9 0.1 3.5 4 0 0 4 4 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_oxidored PF12831.2 gi|336477545|ref|YP_004616686.1| - 0.47 9.4 6.2 0.33 9.9 1.8 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase adh_short PF00106.20 gi|336477546|ref|YP_004616687.1| - 1.6e-34 119.2 2.9 1.9e-34 118.9 2.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336477546|ref|YP_004616687.1| - 2e-26 93.2 0.1 2.9e-26 92.7 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336477546|ref|YP_004616687.1| - 9.5e-16 57.9 1.7 1.2e-15 57.6 1.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336477546|ref|YP_004616687.1| - 3.5e-06 26.6 1.2 6.2e-06 25.8 0.8 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336477546|ref|YP_004616687.1| - 4.4e-05 23.5 0.6 6.7e-05 22.9 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|336477546|ref|YP_004616687.1| - 9.8e-05 21.3 0.6 0.00012 21.0 0.4 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Shikimate_DH PF01488.15 gi|336477546|ref|YP_004616687.1| - 0.0046 17.0 0.8 0.01 15.9 0.5 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_3 PF03447.11 gi|336477546|ref|YP_004616687.1| - 0.0064 16.8 0.2 0.011 16.1 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|336477546|ref|YP_004616687.1| - 0.0096 14.6 0.3 0.013 14.2 0.2 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.19 gi|336477546|ref|YP_004616687.1| - 0.089 13.0 0.1 0.3 11.3 0.1 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|336477546|ref|YP_004616687.1| - 0.1 12.2 1.3 0.15 11.7 0.9 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Acylphosphatase PF00708.13 gi|336477547|ref|YP_004616688.1| - 4.5e-28 97.1 0.0 4.8e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase tRNA-Thr_ED PF08915.6 gi|336477548|ref|YP_004616689.1| - 1.3e-53 180.6 0.0 2.2e-53 179.9 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|336477548|ref|YP_004616689.1| - 4.4e-24 84.9 0.7 1e-23 83.8 0.4 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336477548|ref|YP_004616689.1| - 3e-17 62.3 0.5 6e-17 61.3 0.3 1.6 1 0 0 1 1 1 1 Anticodon binding domain PRC PF05239.11 gi|336477549|ref|YP_004616690.1| - 2.5e-07 30.4 0.3 3.4e-07 30.0 0.2 1.2 1 0 0 1 1 1 1 PRC-barrel domain ATG11 PF10377.4 gi|336477549|ref|YP_004616690.1| - 0.08 12.8 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 Autophagy-related protein 11 Pyr_redox_2 PF07992.9 gi|336477550|ref|YP_004616691.1| - 1.8e-29 103.0 0.5 3e-29 102.3 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336477550|ref|YP_004616691.1| - 4.4e-17 62.2 3.6 1.5e-15 57.3 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336477550|ref|YP_004616691.1| - 7.4e-14 51.7 0.0 1.4e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|336477550|ref|YP_004616691.1| - 3.2e-05 24.0 1.9 0.048 13.7 0.5 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|336477550|ref|YP_004616691.1| - 8.9e-05 22.4 1.9 0.0025 17.7 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|336477550|ref|YP_004616691.1| - 0.00046 19.9 4.8 0.25 10.9 0.0 3.2 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|336477550|ref|YP_004616691.1| - 0.00061 18.7 2.9 0.00061 18.7 2.0 1.8 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|336477550|ref|YP_004616691.1| - 0.00088 18.2 9.9 0.13 11.1 2.2 3.9 4 0 0 4 4 4 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|336477550|ref|YP_004616691.1| - 0.0029 16.5 3.8 0.057 12.2 0.7 3.1 4 0 0 4 4 4 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|336477550|ref|YP_004616691.1| - 0.0031 16.6 5.8 0.51 9.3 3.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336477550|ref|YP_004616691.1| - 0.0073 14.8 3.8 0.056 11.9 1.3 3.1 4 0 0 4 4 4 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|336477550|ref|YP_004616691.1| - 0.0081 15.7 3.4 0.27 10.7 0.0 2.7 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain GDI PF00996.13 gi|336477550|ref|YP_004616691.1| - 0.011 14.0 0.1 0.016 13.5 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor NAD_binding_2 PF03446.10 gi|336477550|ref|YP_004616691.1| - 0.064 13.0 0.3 12 5.7 0.1 2.7 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336477550|ref|YP_004616691.1| - 0.2 10.8 0.8 6 5.9 0.2 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|336477550|ref|YP_004616691.1| - 0.21 10.4 2.1 0.7 8.7 1.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein F420_oxidored PF03807.12 gi|336477550|ref|YP_004616691.1| - 0.24 11.8 1.2 3.4 8.1 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Thi4 PF01946.12 gi|336477550|ref|YP_004616691.1| - 0.31 10.0 3.6 1.2 8.1 1.0 2.8 3 1 0 3 3 3 0 Thi4 family PAPS_reduct PF01507.14 gi|336477551|ref|YP_004616692.1| - 6.8e-42 143.2 0.0 1e-41 142.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.22 gi|336477551|ref|YP_004616692.1| - 0.00082 18.8 5.9 0.00082 18.8 4.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477551|ref|YP_004616692.1| - 0.0013 18.5 1.5 0.0013 18.5 1.0 3.9 5 0 0 5 5 5 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477551|ref|YP_004616692.1| - 0.002 18.4 13.7 0.002 18.4 9.5 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477551|ref|YP_004616692.1| - 0.0053 16.9 14.5 0.0053 16.9 10.0 3.1 4 1 1 5 5 5 2 4Fe-4S dicluster domain ATP_bind_3 PF01171.15 gi|336477551|ref|YP_004616692.1| - 0.013 15.0 0.0 0.029 13.8 0.0 1.6 1 0 0 1 1 1 0 PP-loop family Fer4_17 PF13534.1 gi|336477551|ref|YP_004616692.1| - 0.013 15.7 0.8 0.013 15.7 0.6 3.9 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336477551|ref|YP_004616692.1| - 0.055 13.8 0.4 0.055 13.8 0.2 3.6 4 0 0 4 4 4 0 4Fe-4S dicluster domain NAD_synthase PF02540.12 gi|336477551|ref|YP_004616692.1| - 0.21 10.4 0.0 0.42 9.4 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Fer4_16 PF13484.1 gi|336477551|ref|YP_004616692.1| - 2.1 9.1 20.5 0.054 14.2 2.5 3.5 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Polysacc_synt PF01943.12 gi|336477552|ref|YP_004616693.1| - 5.5e-28 97.9 31.4 5.5e-28 97.9 21.8 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|336477552|ref|YP_004616693.1| - 5.2e-20 71.7 18.2 5.2e-20 71.7 12.6 4.2 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|336477552|ref|YP_004616693.1| - 1.8e-15 57.0 32.8 1.8e-15 57.0 22.8 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|336477552|ref|YP_004616693.1| - 2.1e-11 42.9 34.9 2.1e-11 42.9 24.2 1.6 2 0 0 2 2 2 1 MviN-like protein MannoseP_isomer PF01050.13 gi|336477553|ref|YP_004616694.1| - 2.7e-60 202.3 0.9 4.9e-60 201.5 0.7 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|336477553|ref|YP_004616694.1| - 5.2e-57 192.9 0.0 9.1e-57 192.1 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|336477553|ref|YP_004616694.1| - 8.1e-10 38.0 0.1 1.5e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|336477553|ref|YP_004616694.1| - 2.3e-07 31.0 0.0 3.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336477553|ref|YP_004616694.1| - 0.00052 19.6 0.0 0.00094 18.7 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cupin_6 PF12852.2 gi|336477553|ref|YP_004616694.1| - 0.036 13.6 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 Cupin DSHCT PF08148.7 gi|336477553|ref|YP_004616694.1| - 0.081 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 DSHCT (NUC185) domain NTP_transferase PF00483.18 gi|336477554|ref|YP_004616695.1| - 8.2e-30 103.9 0.0 1.1e-29 103.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336477554|ref|YP_004616695.1| - 3.9e-09 36.7 0.0 6.5e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|336477554|ref|YP_004616695.1| - 0.00029 20.5 0.0 0.00049 19.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|336477554|ref|YP_004616695.1| - 0.0074 15.8 0.0 0.015 14.8 0.0 1.5 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|336477554|ref|YP_004616695.1| - 0.013 15.1 0.1 0.028 14.0 0.0 1.6 1 1 0 1 1 1 0 Cytidylyltransferase Epimerase PF01370.16 gi|336477555|ref|YP_004616696.1| - 1.4e-72 243.9 0.1 1.8e-72 243.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336477555|ref|YP_004616696.1| - 1.4e-08 33.9 0.0 2.4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|336477555|ref|YP_004616696.1| - 4.5e-05 22.4 0.0 8.4e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|336477555|ref|YP_004616696.1| - 0.0057 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit adh_short PF00106.20 gi|336477555|ref|YP_004616696.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Epimerase PF01370.16 gi|336477556|ref|YP_004616697.1| - 9e-81 270.7 0.0 1.1e-80 270.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336477556|ref|YP_004616697.1| - 3.8e-11 42.4 0.0 9.7e-11 41.0 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|336477556|ref|YP_004616697.1| - 4.7e-08 32.2 0.0 8.8e-06 24.8 0.0 2.4 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|336477556|ref|YP_004616697.1| - 1.3e-05 25.3 0.0 2.1e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|336477556|ref|YP_004616697.1| - 0.15 12.3 0.0 0.41 10.9 0.0 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|336477557|ref|YP_004616698.1| - 1.4e-47 162.1 0.0 1.8e-47 161.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336477557|ref|YP_004616698.1| - 4.3e-11 42.2 0.0 6.3e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|336477557|ref|YP_004616698.1| - 1.9e-10 40.1 0.0 0.00017 20.5 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|336477557|ref|YP_004616698.1| - 3.3e-10 39.1 0.0 4.6e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|336477557|ref|YP_004616698.1| - 2.7e-09 36.3 0.0 0.00024 20.1 0.1 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|336477557|ref|YP_004616698.1| - 1.6e-05 25.0 0.0 1.9e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|336477557|ref|YP_004616698.1| - 0.0009 18.5 0.0 0.11 11.7 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family adh_short PF00106.20 gi|336477557|ref|YP_004616698.1| - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.5 2 0 0 2 2 2 1 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336477557|ref|YP_004616698.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.5 gi|336477557|ref|YP_004616698.1| - 0.048 13.3 0.0 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 KR domain ENTH PF01417.15 gi|336477557|ref|YP_004616698.1| - 0.078 12.8 0.1 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 ENTH domain RrnaAD PF00398.15 gi|336477558|ref|YP_004616699.1| - 0.044 12.8 0.5 0.64 8.9 0.0 2.1 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase DUF563 PF04577.9 gi|336477559|ref|YP_004616700.1| - 1.4e-52 178.6 0.0 2.6e-52 177.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF563) Methyltransf_21 PF05050.7 gi|336477560|ref|YP_004616701.1| - 2e-17 63.6 0.2 3.8e-17 62.7 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.1 gi|336477560|ref|YP_004616701.1| - 0.0033 17.0 0.1 0.029 13.9 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477560|ref|YP_004616701.1| - 0.014 15.9 0.0 0.022 15.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain CTP_synth_N PF06418.9 gi|336477560|ref|YP_004616701.1| - 0.054 12.5 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 CTP synthase N-terminus Elf1 PF05129.8 gi|336477561|ref|YP_004616702.1| - 0.00061 19.4 0.4 0.0014 18.2 0.3 1.6 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|336477561|ref|YP_004616702.1| - 1.4 9.0 5.9 27 4.9 0.1 3.5 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Glycos_transf_2 PF00535.21 gi|336477562|ref|YP_004616703.1| - 2.2e-06 27.4 0.6 4.3e-06 26.4 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.10 gi|336477562|ref|YP_004616703.1| - 0.0024 16.5 0.4 0.0067 15.0 0.1 1.7 2 0 0 2 2 2 1 GNT-I family Glyco_transf_25 PF01755.12 gi|336477562|ref|YP_004616703.1| - 0.092 12.3 1.2 0.15 11.6 0.4 1.7 1 1 0 1 1 1 0 Glycosyltransferase family 25 (LPS biosynthesis protein) Glyco_tranf_2_3 PF13641.1 gi|336477562|ref|YP_004616703.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|336477563|ref|YP_004616704.1| - 2.4e-27 95.4 0.0 5.4e-27 94.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336477563|ref|YP_004616704.1| - 1.7e-12 47.6 0.0 3.3e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|336477563|ref|YP_004616704.1| - 5.7e-10 39.3 0.0 9.8e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|336477563|ref|YP_004616704.1| - 0.0013 18.5 0.0 0.0083 15.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF1125 PF06563.6 gi|336477563|ref|YP_004616704.1| - 0.011 15.3 0.4 25 4.6 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1125) Glyco_trans_4_4 PF13579.1 gi|336477563|ref|YP_004616704.1| - 0.034 14.2 0.0 0.094 12.8 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.21 gi|336477564|ref|YP_004616705.1| - 2.7e-27 95.4 4.7 3.3e-27 95.2 2.9 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336477564|ref|YP_004616705.1| - 2.4e-12 47.1 0.0 5.7e-12 45.9 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|336477564|ref|YP_004616705.1| - 6.7e-08 31.9 3.8 1.6e-07 30.7 2.6 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF4116 PF13475.1 gi|336477564|ref|YP_004616705.1| - 0.001 18.5 8.2 0.0031 16.9 0.3 4.0 4 0 0 4 4 4 1 Domain of unknown function (DUF4116) GNT-I PF03071.10 gi|336477564|ref|YP_004616705.1| - 0.0049 15.4 0.1 0.0077 14.8 0.1 1.3 1 0 0 1 1 1 1 GNT-I family Glyco_tranf_2_5 PF13712.1 gi|336477564|ref|YP_004616705.1| - 0.015 14.5 3.3 0.037 13.2 0.4 2.1 1 1 1 2 2 2 0 Glycosyltransferase like family Metallophos_2 PF12850.2 gi|336477564|ref|YP_004616705.1| - 0.15 11.8 0.1 0.27 11.0 0.1 1.4 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Glyco_trans_1_4 PF13692.1 gi|336477565|ref|YP_004616706.1| - 9.5e-17 61.4 0.0 1.6e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|336477565|ref|YP_004616706.1| - 4.7e-12 45.6 0.0 7.7e-12 44.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|336477565|ref|YP_004616706.1| - 1.5e-08 34.5 0.7 3.3e-08 33.4 0.5 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|336477565|ref|YP_004616706.1| - 9.9e-06 25.4 2.8 1.9e-05 24.5 2.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|336477565|ref|YP_004616706.1| - 2.6e-05 24.4 0.0 5.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 STT3 PF02516.9 gi|336477566|ref|YP_004616707.1| - 9.4e-28 97.4 42.7 9.4e-28 97.4 29.6 2.5 2 1 0 2 2 2 2 Oligosaccharyl transferase STT3 subunit NTP_transferase PF00483.18 gi|336477567|ref|YP_004616708.1| - 1.4e-45 155.5 0.1 1.8e-45 155.1 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|336477567|ref|YP_004616708.1| - 5.7e-21 73.0 34.7 6.7e-10 38.0 3.4 4.7 2 1 4 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|336477567|ref|YP_004616708.1| - 6.9e-16 58.7 0.0 9.2e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|336477567|ref|YP_004616708.1| - 1.5e-07 30.8 10.7 0.00015 21.2 1.8 4.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|336477567|ref|YP_004616708.1| - 0.0016 17.9 0.3 0.0044 16.5 0.0 1.8 2 1 1 3 3 3 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|336477567|ref|YP_004616708.1| - 0.0029 17.3 0.1 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.14 gi|336477567|ref|YP_004616708.1| - 0.026 14.1 0.2 0.044 13.4 0.1 1.3 1 1 0 1 1 1 0 Cytidylyltransferase Fucokinase PF07959.7 gi|336477567|ref|YP_004616708.1| - 0.034 12.7 0.7 1.1 7.7 0.0 2.3 1 1 1 2 2 2 0 L-fucokinase Gsf2 PF11055.3 gi|336477567|ref|YP_004616708.1| - 0.093 11.2 0.1 0.13 10.7 0.1 1.2 1 0 0 1 1 1 0 Glucose signalling factor 2 SIS PF01380.17 gi|336477568|ref|YP_004616709.1| - 6.4e-59 197.2 1.4 1.3e-29 102.4 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|336477568|ref|YP_004616709.1| - 4.5e-20 71.9 0.0 1.4e-19 70.3 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|336477568|ref|YP_004616709.1| - 2.2e-18 66.1 1.3 1.1e-14 53.9 0.2 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|336477568|ref|YP_004616709.1| - 2.1e-12 46.8 0.0 5e-12 45.6 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|336477568|ref|YP_004616709.1| - 3.1e-06 26.0 0.0 5.1e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|336477568|ref|YP_004616709.1| - 0.00033 20.3 0.1 0.075 12.7 0.0 3.4 3 0 0 3 3 3 1 SIS domain PGM_PMM_I PF02878.11 gi|336477569|ref|YP_004616710.1| - 4.3e-38 129.9 0.2 1.1e-37 128.5 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|336477569|ref|YP_004616710.1| - 9.8e-25 86.9 0.1 2.1e-24 85.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|336477569|ref|YP_004616710.1| - 1.1e-18 67.3 0.0 2.2e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|336477569|ref|YP_004616710.1| - 2.7e-09 36.8 0.0 6.1e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NTP_transferase PF00483.18 gi|336477570|ref|YP_004616711.1| - 3.6e-49 167.3 0.0 5.6e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|336477570|ref|YP_004616711.1| - 1.9e-16 58.6 30.3 3.8e-07 29.3 2.6 4.7 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|336477570|ref|YP_004616711.1| - 3.5e-15 56.4 0.0 4.8e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|336477570|ref|YP_004616711.1| - 4e-06 26.2 17.9 3e-05 23.4 2.5 4.3 3 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|336477570|ref|YP_004616711.1| - 0.0012 18.4 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|336477570|ref|YP_004616711.1| - 0.012 15.2 0.1 0.043 13.4 0.0 1.8 1 1 0 2 2 2 0 Cytidylyltransferase DUF1328 PF07043.8 gi|336477571|ref|YP_004616712.1| - 1.5e-10 40.8 16.4 2e-10 40.4 11.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF3784 PF12650.2 gi|336477571|ref|YP_004616712.1| - 2.5 8.1 10.6 3.4 7.6 7.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) SecG PF03840.9 gi|336477571|ref|YP_004616712.1| - 3 7.6 11.6 0.31 10.7 1.7 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit PalH PF08733.5 gi|336477571|ref|YP_004616712.1| - 3.4 6.3 6.8 3.5 6.3 4.7 1.0 1 0 0 1 1 1 0 PalH/RIM21 DUF3671 PF12420.3 gi|336477571|ref|YP_004616712.1| - 7.6 6.5 6.2 8.9 6.3 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function AAA_14 PF13173.1 gi|336477572|ref|YP_004616713.1| - 2.7e-34 117.8 0.1 7.1e-34 116.4 0.1 1.8 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|336477572|ref|YP_004616713.1| - 2.9e-13 49.8 0.0 5.9e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|336477572|ref|YP_004616713.1| - 4.4e-09 36.3 0.1 0.00037 20.2 0.0 2.5 1 1 1 2 2 2 2 Archaeal ATPase AAA_22 PF13401.1 gi|336477572|ref|YP_004616713.1| - 0.00013 22.0 0.0 0.027 14.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336477572|ref|YP_004616713.1| - 0.008 16.1 0.0 0.15 12.0 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|336477572|ref|YP_004616713.1| - 0.017 13.9 0.0 0.67 8.7 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain SMK-1 PF04802.10 gi|336477572|ref|YP_004616713.1| - 0.044 13.3 0.2 0.081 12.4 0.1 1.3 1 0 0 1 1 1 0 Component of IIS longevity pathway SMK-1 UTP15_C PF09384.5 gi|336477572|ref|YP_004616713.1| - 0.051 13.2 0.0 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 UTP15 C terminal HTH_10 PF04967.7 gi|336477572|ref|YP_004616713.1| - 0.076 12.6 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain AAA PF00004.24 gi|336477572|ref|YP_004616713.1| - 0.083 13.0 0.0 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|336477572|ref|YP_004616713.1| - 0.1 11.4 0.0 0.3 9.9 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|336477572|ref|YP_004616713.1| - 0.11 11.9 0.0 2.9 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|336477572|ref|YP_004616713.1| - 0.18 11.1 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Aconitase_C PF00694.14 gi|336477573|ref|YP_004616714.1| - 1.4e-20 73.7 0.1 4e-20 72.2 0.0 1.6 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|336477573|ref|YP_004616714.1| - 0.00099 18.5 0.0 0.027 13.8 0.0 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|336477575|ref|YP_004616716.1| - 3.4e-101 338.6 0.0 3.9e-101 338.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase T2SF PF00482.18 gi|336477576|ref|YP_004616717.1| - 2.8e-15 56.3 0.3 3.9e-13 49.3 0.1 3.7 3 1 1 4 4 4 2 Type II secretion system (T2SS), protein F DUF4131 PF13567.1 gi|336477576|ref|YP_004616717.1| - 0.25 10.7 2.5 0.43 9.9 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) BNIP3 PF06553.7 gi|336477576|ref|YP_004616717.1| - 1.6 8.0 5.1 0.19 11.0 0.2 1.8 2 0 0 2 2 2 0 BNIP3 T2SE PF00437.15 gi|336477577|ref|YP_004616718.1| - 2.2e-38 131.7 0.0 3.3e-34 118.0 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_29 PF13555.1 gi|336477577|ref|YP_004616718.1| - 2.7e-05 23.6 0.0 6.2e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain KaiC PF06745.8 gi|336477578|ref|YP_004616719.1| - 1.2e-17 63.8 0.3 1.5e-17 63.5 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336477578|ref|YP_004616719.1| - 2e-09 37.1 0.0 2.8e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336477578|ref|YP_004616719.1| - 0.00013 22.2 0.2 0.00023 21.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336477578|ref|YP_004616719.1| - 0.00018 21.6 0.5 0.00044 20.3 0.3 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|336477578|ref|YP_004616719.1| - 0.00043 19.9 0.0 0.001 18.7 0.0 1.6 1 1 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|336477578|ref|YP_004616719.1| - 0.00048 20.4 0.0 0.00067 19.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_14 PF13173.1 gi|336477578|ref|YP_004616719.1| - 0.00058 19.7 1.9 0.0045 16.8 1.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|336477578|ref|YP_004616719.1| - 0.00065 19.4 0.0 0.00098 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|336477578|ref|YP_004616719.1| - 0.00068 19.3 0.4 0.45 10.1 0.1 2.1 2 0 0 2 2 2 2 Bacterial dnaA protein CbiA PF01656.18 gi|336477578|ref|YP_004616719.1| - 0.0022 17.4 0.8 0.0057 16.0 0.5 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|336477578|ref|YP_004616719.1| - 0.0028 17.1 0.0 0.0047 16.3 0.0 1.4 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|336477578|ref|YP_004616719.1| - 0.0034 18.1 0.1 0.0049 17.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain CobU PF02283.11 gi|336477578|ref|YP_004616719.1| - 0.0036 16.7 0.2 0.038 13.4 0.1 2.0 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase IstB_IS21 PF01695.12 gi|336477578|ref|YP_004616719.1| - 0.005 16.2 0.3 0.043 13.2 0.0 2.0 1 1 0 2 2 2 1 IstB-like ATP binding protein UPF0079 PF02367.12 gi|336477578|ref|YP_004616719.1| - 0.0058 16.2 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MipZ PF09140.6 gi|336477578|ref|YP_004616719.1| - 0.008 15.2 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ DUF2075 PF09848.4 gi|336477578|ref|YP_004616719.1| - 0.0085 15.1 0.0 0.0085 15.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|336477578|ref|YP_004616719.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|336477578|ref|YP_004616719.1| - 0.014 14.8 0.3 0.029 13.9 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.15 gi|336477578|ref|YP_004616719.1| - 0.017 14.7 0.1 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_10 PF12846.2 gi|336477578|ref|YP_004616719.1| - 0.02 14.3 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_35 PF14516.1 gi|336477578|ref|YP_004616719.1| - 0.024 13.2 0.1 0.045 12.3 0.0 1.4 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|336477578|ref|YP_004616719.1| - 0.027 13.6 0.1 0.049 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PRK PF00485.13 gi|336477578|ref|YP_004616719.1| - 0.029 13.9 0.1 0.046 13.2 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Thymidylate_kin PF02223.12 gi|336477578|ref|YP_004616719.1| - 0.037 13.3 0.3 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase Tmemb_18A PF09771.4 gi|336477578|ref|YP_004616719.1| - 0.041 13.8 0.2 0.064 13.2 0.1 1.2 1 0 0 1 1 1 0 Transmembrane protein 188 AAA_23 PF13476.1 gi|336477578|ref|YP_004616719.1| - 0.045 14.0 1.8 0.088 13.1 1.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336477578|ref|YP_004616719.1| - 0.048 13.4 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|336477578|ref|YP_004616719.1| - 0.049 13.5 0.1 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336477578|ref|YP_004616719.1| - 0.058 13.3 1.9 0.082 12.8 1.3 1.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase KTI12 PF08433.5 gi|336477578|ref|YP_004616719.1| - 0.067 12.3 0.2 0.12 11.5 0.0 1.5 2 0 0 2 2 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|336477578|ref|YP_004616719.1| - 0.067 13.3 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 RNA helicase AAA_26 PF13500.1 gi|336477578|ref|YP_004616719.1| - 0.089 12.3 0.1 0.18 11.4 0.1 1.4 1 1 0 1 1 1 0 AAA domain DUF2348 PF09807.4 gi|336477578|ref|YP_004616719.1| - 0.097 11.7 0.2 0.13 11.2 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) AAA_16 PF13191.1 gi|336477578|ref|YP_004616719.1| - 0.11 12.4 0.1 0.13 12.2 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|336477578|ref|YP_004616719.1| - 0.54 9.9 3.4 1.2 8.8 0.2 2.3 2 1 0 2 2 2 0 NTPase PAXNEB PF05625.6 gi|336477578|ref|YP_004616719.1| - 6.2 5.5 5.7 8.1 5.1 0.8 2.0 1 1 0 2 2 2 0 PAXNEB protein Arch_flagellin PF01917.11 gi|336477579|ref|YP_004616720.1| - 4.1e-14 52.6 4.7 1.4e-12 47.6 3.2 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin TRP PF06011.7 gi|336477579|ref|YP_004616720.1| - 0.02 13.4 0.0 0.025 13.1 0.0 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel CARDB PF07705.6 gi|336477579|ref|YP_004616720.1| - 0.026 14.5 0.4 0.072 13.1 0.1 1.9 1 1 1 2 2 2 0 CARDB Arch_flagellin PF01917.11 gi|336477580|ref|YP_004616721.1| - 6.7e-07 29.1 0.2 9.1e-05 22.1 0.0 2.0 1 1 1 2 2 2 2 Archaebacterial flagellin Arch_fla_DE PF04659.8 gi|336477581|ref|YP_004616722.1| - 1.3e-30 105.1 2.4 1.8e-30 104.6 0.0 2.3 3 0 0 3 3 2 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|336477581|ref|YP_004616722.1| - 6.2e-18 64.4 13.7 1.5e-16 59.9 3.4 3.8 4 1 1 5 5 4 2 Flagella accessory protein C (FlaC) DUF869 PF05911.6 gi|336477581|ref|YP_004616722.1| - 4.4e-06 25.2 7.4 6.2e-06 24.7 5.1 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) CENP-F_leu_zip PF10473.4 gi|336477581|ref|YP_004616722.1| - 0.00024 20.9 9.6 0.056 13.3 1.8 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.1 gi|336477581|ref|YP_004616722.1| - 0.002 16.7 7.2 0.006 15.1 5.0 1.6 1 1 0 1 1 1 1 AAA domain Laminin_II PF06009.7 gi|336477581|ref|YP_004616722.1| - 0.0054 16.4 4.0 0.024 14.3 0.1 2.4 1 1 0 2 2 2 1 Laminin Domain II Fib_alpha PF08702.5 gi|336477581|ref|YP_004616722.1| - 0.007 16.4 3.9 1.4 9.0 0.1 2.6 2 0 0 2 2 2 1 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|336477581|ref|YP_004616722.1| - 0.01 14.5 6.2 0.07 11.7 0.7 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Tropomyosin_1 PF12718.2 gi|336477581|ref|YP_004616722.1| - 0.013 15.3 8.0 2 8.2 0.2 2.9 2 1 0 2 2 2 0 Tropomyosin like Tropomyosin PF00261.15 gi|336477581|ref|YP_004616722.1| - 0.014 14.4 10.0 0.16 11.0 0.8 3.0 2 1 1 3 3 3 0 Tropomyosin CEP170_C PF15308.1 gi|336477581|ref|YP_004616722.1| - 0.015 13.6 0.1 0.024 12.9 0.1 1.2 1 0 0 1 1 1 0 CEP170 C-terminus ORF6C PF10552.4 gi|336477581|ref|YP_004616722.1| - 0.015 15.0 7.3 0.45 10.2 1.1 3.4 2 1 1 3 3 3 0 ORF6C domain Myosin_tail_1 PF01576.14 gi|336477581|ref|YP_004616722.1| - 0.016 12.9 6.4 0.17 9.5 0.4 2.1 2 0 0 2 2 2 0 Myosin tail MCPsignal PF00015.16 gi|336477581|ref|YP_004616722.1| - 0.016 14.7 7.2 0.1 12.1 1.4 2.2 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Cauli_AT PF03233.8 gi|336477581|ref|YP_004616722.1| - 0.018 14.7 2.5 2.2 7.9 0.1 2.5 2 0 0 2 2 2 0 Aphid transmission protein ADIP PF11559.3 gi|336477581|ref|YP_004616722.1| - 0.018 14.9 4.0 0.14 12.0 0.2 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding V_ATPase_I PF01496.14 gi|336477581|ref|YP_004616722.1| - 0.024 12.5 4.4 0.31 8.8 0.1 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family NPV_P10 PF05531.7 gi|336477581|ref|YP_004616722.1| - 0.041 14.1 2.4 9.6 6.5 0.0 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Nup54 PF13874.1 gi|336477581|ref|YP_004616722.1| - 0.059 13.0 5.9 4.2 7.0 0.6 2.9 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 BLOC1_2 PF10046.4 gi|336477581|ref|YP_004616722.1| - 0.064 13.3 9.9 1.5 8.9 0.7 3.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.6 gi|336477581|ref|YP_004616722.1| - 0.069 13.5 8.3 0.36 11.2 0.5 3.0 1 1 0 2 2 2 0 Syntaxin 6, N-terminal RmuC PF02646.11 gi|336477581|ref|YP_004616722.1| - 0.074 11.8 4.0 0.11 11.2 0.2 2.5 1 1 0 2 2 2 0 RmuC family Vps5 PF09325.5 gi|336477581|ref|YP_004616722.1| - 0.076 12.2 4.0 0.67 9.1 0.1 2.3 2 0 0 2 2 2 0 Vps5 C terminal like DUF1664 PF07889.7 gi|336477581|ref|YP_004616722.1| - 0.087 12.6 9.3 4.2 7.1 0.4 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Phytoreo_S7 PF07236.6 gi|336477581|ref|YP_004616722.1| - 0.15 10.3 3.9 0.058 11.7 0.1 1.8 2 0 0 2 2 2 0 Phytoreovirus S7 protein Transposase_22 PF02994.9 gi|336477581|ref|YP_004616722.1| - 0.2 10.1 11.7 1 7.7 1.5 2.1 1 1 0 2 2 2 0 L1 transposable element Reo_sigmaC PF04582.7 gi|336477581|ref|YP_004616722.1| - 0.2 10.7 3.3 1.9 7.5 0.3 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|336477581|ref|YP_004616722.1| - 0.22 11.0 10.7 1.9 8.0 1.9 2.2 1 1 1 2 2 2 0 IncA protein Adeno_PIX PF03955.9 gi|336477581|ref|YP_004616722.1| - 0.27 11.7 0.9 22 5.5 0.1 2.7 2 1 0 2 2 2 0 Adenovirus hexon-associated protein (IX) DUF342 PF03961.8 gi|336477581|ref|YP_004616722.1| - 0.27 9.6 6.8 0.49 8.7 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) bZIP_1 PF00170.16 gi|336477581|ref|YP_004616722.1| - 0.28 11.1 7.9 3.7 7.5 0.7 3.8 3 1 2 5 5 3 0 bZIP transcription factor EzrA PF06160.7 gi|336477581|ref|YP_004616722.1| - 0.31 9.1 9.3 0.17 10.0 0.6 2.3 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA COG6 PF06419.6 gi|336477581|ref|YP_004616722.1| - 0.32 9.0 7.2 1.8 6.6 0.7 2.4 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF812 PF05667.6 gi|336477581|ref|YP_004616722.1| - 0.34 9.3 8.2 0.63 8.4 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Corona_S2 PF01601.11 gi|336477581|ref|YP_004616722.1| - 0.34 8.9 3.4 3.7 5.5 0.1 2.1 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein WXG100 PF06013.7 gi|336477581|ref|YP_004616722.1| - 0.34 10.9 1.8 16 5.5 0.2 3.2 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF1465 PF07323.7 gi|336477581|ref|YP_004616722.1| - 0.35 10.4 2.7 1.4 8.4 0.0 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF1465) Prefoldin_2 PF01920.15 gi|336477581|ref|YP_004616722.1| - 0.46 10.2 7.3 7.3 6.4 1.0 3.4 2 1 0 2 2 2 0 Prefoldin subunit WEMBL PF05701.6 gi|336477581|ref|YP_004616722.1| - 0.47 8.8 7.4 1.6 7.1 5.1 1.7 1 1 0 1 1 1 0 Weak chloroplast movement under blue light STAT_alpha PF01017.15 gi|336477581|ref|YP_004616722.1| - 0.52 9.9 2.9 4.2 7.0 0.1 2.7 1 1 1 3 3 3 0 STAT protein, all-alpha domain Syntaxin PF00804.20 gi|336477581|ref|YP_004616722.1| - 0.54 10.4 10.1 10 6.3 1.1 3.7 1 1 3 4 4 4 0 Syntaxin GAS PF13851.1 gi|336477581|ref|YP_004616722.1| - 0.61 9.2 6.5 1.9 7.6 0.5 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF16 PF01519.11 gi|336477581|ref|YP_004616722.1| - 0.78 9.9 5.7 7.5 6.8 0.4 2.7 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF964 PF06133.6 gi|336477581|ref|YP_004616722.1| - 0.79 9.7 4.9 1.6 8.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF964) Spc24 PF08286.6 gi|336477581|ref|YP_004616722.1| - 1.1 8.9 9.0 2.4 7.8 0.7 3.0 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 APG17 PF04108.7 gi|336477581|ref|YP_004616722.1| - 1.2 7.8 7.4 0.76 8.5 0.6 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 Sec34 PF04136.10 gi|336477581|ref|YP_004616722.1| - 1.4 8.5 7.9 0.56 9.8 0.8 2.3 1 1 0 2 2 2 0 Sec34-like family Mnd1 PF03962.10 gi|336477581|ref|YP_004616722.1| - 1.9 8.1 7.2 0.54 9.8 0.4 2.3 1 1 1 2 2 2 0 Mnd1 family Snapin_Pallidin PF14712.1 gi|336477581|ref|YP_004616722.1| - 2 8.8 10.2 2.4 8.5 0.1 3.8 3 1 1 4 4 3 0 Snapin/Pallidin Syntaxin_2 PF14523.1 gi|336477581|ref|YP_004616722.1| - 2.4 8.2 6.0 19 5.3 1.2 3.2 1 1 1 2 2 2 0 Syntaxin-like protein Prefoldin PF02996.12 gi|336477581|ref|YP_004616722.1| - 2.7 7.6 7.7 2.6 7.7 0.1 3.3 2 1 0 3 3 3 0 Prefoldin subunit CorA PF01544.13 gi|336477581|ref|YP_004616722.1| - 2.8 6.8 8.2 9.5 5.1 0.8 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein CALCOCO1 PF07888.6 gi|336477581|ref|YP_004616722.1| - 3.5 5.7 8.0 0.87 7.8 1.5 2.0 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF4200 PF13863.1 gi|336477581|ref|YP_004616722.1| - 3.5 7.5 11.2 3.6 7.5 1.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) DUF607 PF04678.8 gi|336477581|ref|YP_004616722.1| - 4.9 7.0 5.8 21 4.9 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 APG6 PF04111.7 gi|336477581|ref|YP_004616722.1| - 5.3 5.9 8.9 2 7.3 0.8 2.1 1 1 0 2 2 2 0 Autophagy protein Apg6 Fzo_mitofusin PF04799.8 gi|336477581|ref|YP_004616722.1| - 9.8 5.5 6.8 8.5 5.7 0.2 3.0 1 1 1 3 3 3 0 fzo-like conserved region DUF724 PF05266.9 gi|336477581|ref|YP_004616722.1| - 10 5.7 8.8 8.4 5.9 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Methyltransf_31 PF13847.1 gi|336477582|ref|YP_004616723.1| - 5.2e-11 42.3 0.0 8.5e-11 41.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336477582|ref|YP_004616723.1| - 2.4e-10 40.2 0.0 3.3e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|336477582|ref|YP_004616723.1| - 5.3e-09 36.6 0.0 9.7e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336477582|ref|YP_004616723.1| - 8.7e-07 29.2 0.0 1.5e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336477582|ref|YP_004616723.1| - 9.8e-07 28.8 0.0 1.7e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336477582|ref|YP_004616723.1| - 1.6e-06 27.5 0.0 2.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|336477582|ref|YP_004616723.1| - 1.6e-06 27.2 0.0 2.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.15 gi|336477582|ref|YP_004616723.1| - 5.8e-06 25.5 0.0 8.3e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|336477582|ref|YP_004616723.1| - 8.3e-06 24.7 0.0 1.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.7 gi|336477582|ref|YP_004616723.1| - 1e-05 25.9 0.0 1.8e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336477582|ref|YP_004616723.1| - 0.00022 20.4 0.0 0.00037 19.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|336477582|ref|YP_004616723.1| - 0.0025 17.3 0.0 0.0044 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|336477582|ref|YP_004616723.1| - 0.0035 16.7 0.0 0.0054 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|336477582|ref|YP_004616723.1| - 0.016 16.0 0.0 0.032 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336477582|ref|YP_004616723.1| - 0.017 15.5 0.1 0.04 14.4 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain CmcI PF04989.7 gi|336477582|ref|YP_004616723.1| - 0.018 14.3 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase DNA_methylase PF00145.12 gi|336477582|ref|YP_004616723.1| - 0.14 11.2 0.1 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Response_reg PF00072.19 gi|336477583|ref|YP_004616724.1| - 1.7e-28 98.8 1.1 1.9e-28 98.7 0.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|336477583|ref|YP_004616724.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain Response_reg PF00072.19 gi|336477584|ref|YP_004616725.1| - 2.9e-29 101.3 1.3 4.9e-29 100.5 0.6 1.6 2 0 0 2 2 2 1 Response regulator receiver domain tRNA-synt_2c PF01411.14 gi|336477585|ref|YP_004616726.1| - 7.5e-128 427.2 0.0 9.6e-128 426.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|336477585|ref|YP_004616726.1| - 8.6e-12 44.7 0.3 1.9e-11 43.6 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|336477585|ref|YP_004616726.1| - 5.5e-10 38.8 10.4 1e-09 37.9 6.3 2.2 2 0 0 2 2 2 1 DHHA1 domain YhfH PF14149.1 gi|336477585|ref|YP_004616726.1| - 4 7.3 4.9 5.5 6.8 1.6 2.2 1 1 1 2 2 2 0 YhfH-like protein SurE PF01975.12 gi|336477586|ref|YP_004616727.1| - 3.9e-58 196.0 0.0 4.9e-58 195.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Radical_SAM PF04055.16 gi|336477588|ref|YP_004616729.1| - 6.4e-29 101.2 0.1 9.7e-29 100.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|336477588|ref|YP_004616729.1| - 1.1e-22 80.0 0.1 1.1e-22 80.0 0.1 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|336477588|ref|YP_004616729.1| - 1.8e-08 34.5 0.0 3e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336477588|ref|YP_004616729.1| - 2.6e-07 30.6 0.1 4.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain GATase_3 PF07685.9 gi|336477589|ref|YP_004616730.1| - 8e-29 100.2 0.1 1.2e-28 99.7 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|336477589|ref|YP_004616730.1| - 2.5e-25 89.0 0.0 4.2e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|336477589|ref|YP_004616730.1| - 4.2e-21 75.4 2.0 2e-13 50.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|336477589|ref|YP_004616730.1| - 0.017 14.3 0.1 0.71 9.0 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF1611 PF07755.6 gi|336477589|ref|YP_004616730.1| - 0.056 12.0 0.0 0.23 10.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) MipZ PF09140.6 gi|336477589|ref|YP_004616730.1| - 0.082 11.9 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ Hydrolase_2 PF07486.7 gi|336477589|ref|YP_004616730.1| - 0.11 13.0 0.1 0.21 12.1 0.1 1.4 1 0 0 1 1 1 0 Cell Wall Hydrolase MobB PF03205.9 gi|336477589|ref|YP_004616730.1| - 0.15 11.7 0.7 0.46 10.1 0.5 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|336477589|ref|YP_004616730.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DNA_primase_lrg PF04104.9 gi|336477590|ref|YP_004616731.1| - 2.1e-36 125.5 0.0 4.8e-36 124.3 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|336477591|ref|YP_004616732.1| - 5.9e-15 54.9 0.5 2.2e-14 53.0 0.1 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|336477591|ref|YP_004616732.1| - 3.5e-10 39.8 0.0 3.6e-08 33.3 0.0 2.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|336477591|ref|YP_004616732.1| - 0.0033 16.5 0.0 0.027 13.5 0.0 2.0 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta PF00712.14 gi|336477591|ref|YP_004616732.1| - 0.047 13.5 0.3 0.12 12.3 0.1 1.8 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain TFIIS_C PF01096.13 gi|336477592|ref|YP_004616733.1| - 2.1e-18 65.6 16.7 4.6e-18 64.5 3.3 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|336477592|ref|YP_004616733.1| - 1.4e-08 34.2 3.5 1.4e-08 34.2 2.4 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|336477592|ref|YP_004616733.1| - 1e-07 31.5 7.6 0.00026 20.6 0.2 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|336477592|ref|YP_004616733.1| - 1.1e-05 25.1 12.7 5.8e-05 22.8 0.9 2.6 2 1 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|336477592|ref|YP_004616733.1| - 3.3e-05 23.6 8.7 0.029 14.1 1.5 2.4 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.5 gi|336477592|ref|YP_004616733.1| - 0.00012 21.9 10.8 0.028 14.3 0.2 2.6 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) PhnA_Zn_Ribbon PF08274.7 gi|336477592|ref|YP_004616733.1| - 0.00013 21.6 4.8 0.11 12.3 0.2 2.5 2 1 0 2 2 2 2 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|336477592|ref|YP_004616733.1| - 0.00037 19.9 8.3 0.22 10.9 0.0 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|336477592|ref|YP_004616733.1| - 0.0027 17.1 15.7 0.093 12.2 3.4 3.4 3 1 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336477592|ref|YP_004616733.1| - 0.003 17.1 15.0 1.2 8.7 0.4 4.2 3 1 1 4 4 4 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|336477592|ref|YP_004616733.1| - 0.0077 15.9 8.3 0.047 13.4 1.1 2.9 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|336477592|ref|YP_004616733.1| - 0.0098 15.5 17.0 1.4 8.6 0.6 4.2 3 1 0 3 3 3 2 zinc-ribbon domain Ogr_Delta PF04606.7 gi|336477592|ref|YP_004616733.1| - 0.013 15.1 10.0 0.02 14.5 1.3 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Baculo_ME53 PF06061.6 gi|336477592|ref|YP_004616733.1| - 0.013 14.4 1.0 0.013 14.4 0.7 2.3 2 1 0 2 2 2 0 Baculoviridae ME53 HypA PF01155.14 gi|336477592|ref|YP_004616733.1| - 0.017 14.8 9.3 0.11 12.1 0.8 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|336477592|ref|YP_004616733.1| - 0.027 14.2 1.6 0.027 14.2 1.1 2.8 2 1 0 2 2 2 0 zinc-ribbons IBR PF01485.16 gi|336477592|ref|YP_004616733.1| - 0.031 14.1 11.7 3.3 7.6 5.1 3.1 2 1 0 2 2 2 0 IBR domain zf-DNA_Pol PF08996.5 gi|336477592|ref|YP_004616733.1| - 0.037 13.3 0.1 0.037 13.3 0.1 2.3 2 1 0 2 2 2 0 DNA Polymerase alpha zinc finger Nudix_N_2 PF14803.1 gi|336477592|ref|YP_004616733.1| - 0.039 13.6 9.8 3.1 7.5 0.7 4.2 4 1 0 4 4 3 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|336477592|ref|YP_004616733.1| - 0.042 13.0 15.2 0.39 9.9 0.2 3.6 3 1 0 3 3 3 0 zinc-ribbon domain Cytochrome_C554 PF13435.1 gi|336477592|ref|YP_004616733.1| - 0.16 12.0 3.7 0.2 11.6 2.0 1.6 1 1 0 1 1 1 0 Cytochrome c554 and c-prime UPF0547 PF10571.4 gi|336477592|ref|YP_004616733.1| - 0.16 11.6 0.0 0.16 11.6 0.0 3.4 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|336477592|ref|YP_004616733.1| - 0.19 12.0 11.3 0.68 10.2 0.6 3.1 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|336477592|ref|YP_004616733.1| - 0.2 11.7 3.7 1.9 8.5 0.1 3.2 3 0 0 3 3 3 0 zinc-finger C1_1 PF00130.17 gi|336477592|ref|YP_004616733.1| - 0.21 11.3 9.6 2 8.2 0.3 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_ligase_ZBD PF03119.11 gi|336477592|ref|YP_004616733.1| - 0.35 10.6 2.6 5 6.9 0.3 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Elf1 PF05129.8 gi|336477592|ref|YP_004616733.1| - 0.4 10.3 8.1 2.7 7.7 0.6 2.9 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like DUF3797 PF12677.2 gi|336477592|ref|YP_004616733.1| - 0.46 10.1 0.1 0.46 10.1 0.1 3.7 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|336477592|ref|YP_004616733.1| - 0.63 9.4 14.6 2.8 7.3 1.7 3.3 2 2 1 3 3 3 0 TFIIB zinc-binding Baculo_LEF5_C PF11792.3 gi|336477592|ref|YP_004616733.1| - 0.7 9.3 0.1 0.7 9.3 0.1 3.2 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain PolC_DP2 PF03833.8 gi|336477592|ref|YP_004616733.1| - 0.86 7.1 5.8 0.18 9.4 0.3 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.6 gi|336477592|ref|YP_004616733.1| - 0.88 9.1 9.1 12 5.5 0.1 3.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|336477592|ref|YP_004616733.1| - 0.9 9.6 13.7 1.7 8.7 0.0 3.8 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cytochrome_C7 PF14522.1 gi|336477592|ref|YP_004616733.1| - 0.93 9.1 6.7 5.2 6.7 4.2 2.2 1 1 0 1 1 1 0 Cytochrome c7 Ribosomal_S27e PF01667.12 gi|336477592|ref|YP_004616733.1| - 1 8.9 9.2 1.7 8.2 0.0 3.4 3 1 0 3 3 3 0 Ribosomal protein S27 Terminase_GpA PF05876.7 gi|336477592|ref|YP_004616733.1| - 1 7.6 7.3 0.18 10.1 2.2 1.7 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|336477592|ref|YP_004616733.1| - 1.1 8.8 18.2 1.3 8.5 3.1 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|336477592|ref|YP_004616733.1| - 1.2 9.0 16.8 3.4 7.6 0.1 4.2 3 1 0 4 4 4 0 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|336477592|ref|YP_004616733.1| - 1.3 9.1 8.5 12 6.0 3.5 2.9 2 1 0 2 2 2 0 DnaJ central domain DUF164 PF02591.10 gi|336477592|ref|YP_004616733.1| - 1.4 8.8 7.1 13 5.7 0.1 3.7 4 0 0 4 4 4 0 Putative zinc ribbon domain Rubredoxin PF00301.15 gi|336477592|ref|YP_004616733.1| - 1.5 8.7 12.4 11 5.9 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin Cytochrom_c3_2 PF14537.1 gi|336477592|ref|YP_004616733.1| - 1.8 8.9 7.1 16 5.8 5.0 2.3 1 1 0 1 1 1 0 Cytochrome c3 zf-AN1 PF01428.11 gi|336477592|ref|YP_004616733.1| - 2.9 7.8 9.6 23 4.9 0.1 3.3 3 1 0 3 3 3 0 AN1-like Zinc finger GFA PF04828.9 gi|336477592|ref|YP_004616733.1| - 3.2 7.7 10.4 5.9 6.9 0.7 3.4 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Cytochrom_CIII PF02085.11 gi|336477592|ref|YP_004616733.1| - 3.6 7.7 7.7 23 5.1 0.3 2.3 1 1 1 2 2 2 0 Class III cytochrome C family zf-C2HC5 PF06221.8 gi|336477592|ref|YP_004616733.1| - 4.5 7.1 6.4 2.3 8.0 0.8 2.6 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type Ribosomal_L32p PF01783.18 gi|336477592|ref|YP_004616733.1| - 4.9 7.4 7.9 15 5.8 1.8 3.0 3 1 0 3 3 3 0 Ribosomal L32p protein family FeS PF04060.8 gi|336477592|ref|YP_004616733.1| - 5.6 6.6 7.9 0.56 9.8 0.2 2.8 3 0 0 3 3 3 0 Putative Fe-S cluster zf-RING_4 PF14570.1 gi|336477592|ref|YP_004616733.1| - 6.7 6.3 14.8 4.4 6.9 0.1 3.8 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-ZPR1 PF03367.8 gi|336477592|ref|YP_004616733.1| - 7 5.7 7.0 2.5 7.2 0.1 2.8 2 1 0 2 2 2 0 ZPR1 zinc-finger domain DUF3795 PF12675.2 gi|336477592|ref|YP_004616733.1| - 8.5 6.6 8.9 1.6 8.9 2.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3795) zf-C4_Topoisom PF01396.14 gi|336477592|ref|YP_004616733.1| - 8.8 5.9 15.0 2.1 7.9 0.1 3.7 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-H2C2_2 PF13465.1 gi|336477592|ref|YP_004616733.1| - 10 6.6 18.5 4.1 7.8 0.6 4.0 4 0 0 4 4 4 0 Zinc-finger double domain NUDIX PF00293.23 gi|336477593|ref|YP_004616734.1| - 5.7e-20 71.3 0.0 6.7e-20 71.1 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Exosortase_EpsH PF09721.5 gi|336477594|ref|YP_004616735.1| - 1e-46 159.2 25.7 1.2e-46 159.0 17.8 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Apq12 PF12716.2 gi|336477594|ref|YP_004616735.1| - 0.1 12.3 0.5 0.1 12.3 0.4 3.3 3 0 0 3 3 3 0 Nuclear pore assembly and biogenesis PS_Dcarbxylase PF02666.10 gi|336477595|ref|YP_004616736.1| - 8.1e-31 106.8 1.7 3.5e-25 88.4 0.2 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.1 gi|336477595|ref|YP_004616736.1| - 0.0015 18.1 2.4 0.49 10.1 0.0 3.8 1 1 3 4 4 4 1 RnfC Barrel sandwich hybrid domain Ser_hydrolase PF06821.8 gi|336477595|ref|YP_004616736.1| - 0.15 11.6 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Serine hydrolase CDP-OH_P_transf PF01066.16 gi|336477596|ref|YP_004616737.1| - 6.3e-14 52.0 4.0 6.3e-14 52.0 2.8 3.0 2 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase ThiF PF00899.16 gi|336477597|ref|YP_004616738.1| - 2.7e-45 153.5 0.2 3.6e-45 153.1 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|336477597|ref|YP_004616738.1| - 5.8e-19 67.4 0.1 1.1e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain 2-Hacid_dh_C PF02826.14 gi|336477597|ref|YP_004616738.1| - 0.027 13.6 0.3 0.57 9.3 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF302 PF03625.9 gi|336477597|ref|YP_004616738.1| - 0.099 12.2 0.0 7.3 6.2 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function DUF302 Shikimate_DH PF01488.15 gi|336477597|ref|YP_004616738.1| - 0.17 11.9 4.1 0.23 11.5 1.3 2.2 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF381 PF04038.7 gi|336477598|ref|YP_004616739.1| - 3e-25 88.0 0.9 4.1e-25 87.5 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|336477598|ref|YP_004616739.1| - 2.6e-22 77.9 0.0 3.7e-22 77.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DnaI_N PF07319.6 gi|336477598|ref|YP_004616739.1| - 0.1 12.8 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus Aminotran_1_2 PF00155.16 gi|336477599|ref|YP_004616740.1| - 7.1e-60 202.8 0.0 8.1e-60 202.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336477599|ref|YP_004616740.1| - 6e-09 35.3 0.0 8.7e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|336477599|ref|YP_004616740.1| - 0.0001 21.1 0.0 0.00022 19.9 0.0 1.5 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|336477599|ref|YP_004616740.1| - 0.00024 19.4 0.0 0.00087 17.6 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|336477599|ref|YP_004616740.1| - 0.0016 17.3 0.0 0.0043 15.8 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|336477600|ref|YP_004616741.1| - 3.1e-112 374.7 0.0 3.7e-112 374.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|336477600|ref|YP_004616741.1| - 0.0002 20.6 0.0 0.00049 19.3 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336477600|ref|YP_004616741.1| - 0.0016 17.2 0.0 0.003 16.3 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|336477600|ref|YP_004616741.1| - 0.039 12.9 0.0 0.066 12.1 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|336477600|ref|YP_004616741.1| - 0.12 10.6 0.0 0.16 10.2 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Bactofilin PF04519.8 gi|336477601|ref|YP_004616742.1| - 8.6e-11 41.7 13.2 0.00047 20.1 0.7 4.0 2 2 1 4 4 4 4 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|336477601|ref|YP_004616742.1| - 1.8e-06 27.1 19.1 0.21 11.1 0.2 6.7 5 1 2 7 7 7 5 Bacterial transferase hexapeptide (six repeats) DUF2121 PF09894.4 gi|336477601|ref|YP_004616742.1| - 0.016 14.4 0.1 0.049 12.9 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) DUF3494 PF11999.3 gi|336477601|ref|YP_004616742.1| - 0.058 13.0 0.4 0.6 9.7 0.0 2.5 2 2 1 3 3 3 0 Protein of unknown function (DUF3494) DUF2863 PF11062.3 gi|336477601|ref|YP_004616742.1| - 0.088 10.8 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) TGT_C2 PF14810.1 gi|336477602|ref|YP_004616743.1| - 1.9e-29 101.2 0.1 3.2e-29 100.5 0.1 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|336477602|ref|YP_004616743.1| - 1.9e-16 59.5 0.6 9.4e-16 57.3 0.5 1.8 2 0 0 2 2 2 1 PUA domain DUF4651 PF15513.1 gi|336477602|ref|YP_004616743.1| - 0.19 11.1 0.6 0.99 8.9 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4651) RtcB PF01139.12 gi|336477603|ref|YP_004616744.1| - 2.6e-154 514.2 0.1 3e-154 514.0 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.11 gi|336477604|ref|YP_004616745.1| - 1.4e-40 138.4 0.2 1.6e-40 138.2 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|336477604|ref|YP_004616745.1| - 0.0017 17.9 0.0 0.0037 16.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) CDP-OH_P_transf PF01066.16 gi|336477605|ref|YP_004616746.1| - 8.4e-15 54.9 8.6 1.2e-14 54.4 5.1 1.8 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2892 PF11127.3 gi|336477605|ref|YP_004616746.1| - 0.42 10.4 17.5 0.18 11.6 0.7 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF2892) Aldolase_II PF00596.16 gi|336477606|ref|YP_004616747.1| - 1.6e-34 119.1 0.1 1.7e-34 119.0 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain PAS_3 PF08447.6 gi|336477607|ref|YP_004616748.1| - 9.1e-57 189.1 3.2 3.1e-24 84.8 0.2 4.6 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|336477607|ref|YP_004616748.1| - 5.1e-31 107.1 0.0 4.8e-07 30.1 0.0 6.0 5 0 0 5 5 5 5 PAS domain HisKA_2 PF07568.7 gi|336477607|ref|YP_004616748.1| - 1.2e-30 105.1 2.4 1.2e-30 105.1 1.7 2.4 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.19 gi|336477607|ref|YP_004616748.1| - 4.7e-28 97.2 0.0 1.3e-07 31.4 0.0 5.7 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|336477607|ref|YP_004616748.1| - 1.7e-23 82.7 0.0 5e-07 29.7 0.0 5.5 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|336477607|ref|YP_004616748.1| - 8.2e-20 69.9 0.0 0.01 15.6 0.0 6.7 6 0 0 6 6 6 6 PAS domain GAF_3 PF13492.1 gi|336477607|ref|YP_004616748.1| - 2.8e-12 46.8 0.0 2.9e-06 27.3 0.0 4.0 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.21 gi|336477607|ref|YP_004616748.1| - 5e-12 45.5 0.1 1.1e-11 44.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|336477607|ref|YP_004616748.1| - 1e-11 45.5 0.0 3.3e-05 24.4 0.0 3.0 2 0 0 2 2 2 2 GAF domain HWE_HK PF07536.9 gi|336477607|ref|YP_004616748.1| - 9.5e-09 35.5 0.6 2.5e-07 31.0 0.1 2.6 2 0 0 2 2 2 1 HWE histidine kinase GAF PF01590.21 gi|336477607|ref|YP_004616748.1| - 2.9e-06 27.4 0.0 0.00056 20.0 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.1 gi|336477607|ref|YP_004616748.1| - 6.3e-06 26.1 0.0 0.021 14.7 0.0 3.0 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|336477607|ref|YP_004616748.1| - 9e-06 25.4 0.0 2.1e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|336477607|ref|YP_004616748.1| - 0.00035 20.8 0.3 0.0066 16.6 0.0 3.5 4 1 0 4 4 3 1 PAS domain Catalase PF00199.14 gi|336477608|ref|YP_004616749.1| - 9e-195 646.7 0.3 1.1e-194 646.4 0.2 1.0 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|336477608|ref|YP_004616749.1| - 1.3e-21 76.2 0.0 3.8e-21 74.7 0.0 1.8 2 0 0 2 2 2 1 Catalase-related immune-responsive PLDc_N PF13396.1 gi|336477609|ref|YP_004616750.1| - 7.8e-14 51.0 2.3 7.8e-14 51.0 1.6 1.9 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal YajC PF02699.10 gi|336477609|ref|YP_004616750.1| - 0.0052 16.4 0.3 0.0052 16.4 0.2 2.1 2 0 0 2 2 2 1 Preprotein translocase subunit MASE1 PF05231.9 gi|336477609|ref|YP_004616750.1| - 0.015 14.3 0.5 0.017 14.1 0.4 1.0 1 0 0 1 1 1 0 MASE1 DUF2254 PF10011.4 gi|336477609|ref|YP_004616750.1| - 0.018 13.5 1.4 0.02 13.3 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) UPF0104 PF03706.8 gi|336477609|ref|YP_004616750.1| - 0.041 13.1 1.3 0.045 13.0 0.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) LGT PF01790.13 gi|336477609|ref|YP_004616750.1| - 0.044 12.7 1.9 0.047 12.6 1.3 1.0 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase DUF4184 PF13803.1 gi|336477609|ref|YP_004616750.1| - 0.048 12.9 0.1 0.053 12.8 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4184) Caa3_CtaG PF09678.5 gi|336477609|ref|YP_004616750.1| - 0.066 12.1 2.0 0.077 11.9 1.4 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF2516 PF10724.4 gi|336477609|ref|YP_004616750.1| - 0.17 11.9 2.9 0.33 10.9 2.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2516) Cation_efflux PF01545.16 gi|336477609|ref|YP_004616750.1| - 0.18 10.8 0.9 0.21 10.6 0.6 1.0 1 0 0 1 1 1 0 Cation efflux family DUF4131 PF13567.1 gi|336477609|ref|YP_004616750.1| - 0.24 10.8 1.1 0.29 10.5 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) ATP_synt_H PF05493.8 gi|336477609|ref|YP_004616750.1| - 0.32 11.0 3.3 4 7.5 0.1 2.2 1 1 1 2 2 2 0 ATP synthase subunit H DUF3328 PF11807.3 gi|336477610|ref|YP_004616751.1| - 0.018 14.7 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) EB_dh PF09459.5 gi|336477611|ref|YP_004616752.1| - 4.1e-53 180.4 0.0 1.4e-51 175.5 0.0 2.0 2 0 0 2 2 2 2 Ethylbenzene dehydrogenase Trypan_PARP PF05887.6 gi|336477611|ref|YP_004616752.1| - 0.016 15.0 2.7 0.016 15.0 1.9 1.6 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) DUF4162 PF13732.1 gi|336477612|ref|YP_004616753.1| - 0.056 13.9 0.1 0.079 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Glt_symporter PF03616.9 gi|336477613|ref|YP_004616754.1| - 2.8e-10 39.2 15.0 1.2e-08 33.9 10.4 2.5 1 1 0 1 1 1 1 Sodium/glutamate symporter Radical_SAM PF04055.16 gi|336477614|ref|YP_004616755.1| - 2.1e-16 60.5 0.1 5.9e-16 59.0 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336477614|ref|YP_004616755.1| - 3.9e-11 43.2 0.0 8.1e-11 42.2 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336477614|ref|YP_004616755.1| - 2.1e-10 40.6 0.0 8.5e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain NRDD PF13597.1 gi|336477615|ref|YP_004616756.1| - 2.3e-152 507.8 0.0 2.8e-152 507.6 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|336477615|ref|YP_004616756.1| - 0.011 16.1 0.0 0.023 15.0 0.0 1.5 1 0 0 1 1 1 0 ATP cone domain Glutaredoxin PF00462.19 gi|336477616|ref|YP_004616757.1| - 4.2e-07 29.8 0.1 5.4e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|336477616|ref|YP_004616757.1| - 0.00033 20.8 0.0 0.00038 20.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|336477616|ref|YP_004616757.1| - 0.14 12.4 0.4 0.25 11.5 0.3 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain Rad51 PF08423.6 gi|336477617|ref|YP_004616758.1| - 2.3e-32 111.9 0.1 2.9e-32 111.5 0.1 1.0 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|336477617|ref|YP_004616758.1| - 1.3e-15 57.1 0.9 1.9e-14 53.3 0.6 2.0 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336477617|ref|YP_004616758.1| - 4.5e-14 52.3 0.0 6.4e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|336477617|ref|YP_004616758.1| - 1.7e-11 43.7 0.2 2e-11 43.5 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|336477617|ref|YP_004616758.1| - 1.8e-07 30.8 0.1 2e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) CobU PF02283.11 gi|336477617|ref|YP_004616758.1| - 0.0012 18.2 0.0 0.0033 16.8 0.0 1.6 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF2075 PF09848.4 gi|336477617|ref|YP_004616758.1| - 0.0019 17.2 0.0 0.0023 17.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|336477617|ref|YP_004616758.1| - 0.002 17.3 0.0 0.0039 16.4 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.1 gi|336477617|ref|YP_004616758.1| - 0.0029 17.2 0.0 0.0042 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336477617|ref|YP_004616758.1| - 0.0055 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain MobB PF03205.9 gi|336477617|ref|YP_004616758.1| - 0.0064 16.1 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|336477617|ref|YP_004616758.1| - 0.0065 15.9 0.0 0.0088 15.5 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|336477617|ref|YP_004616758.1| - 0.0079 15.9 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|336477617|ref|YP_004616758.1| - 0.0081 15.5 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_31 PF13614.1 gi|336477617|ref|YP_004616758.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336477617|ref|YP_004616758.1| - 0.016 15.3 0.1 0.031 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|336477617|ref|YP_004616758.1| - 0.04 14.1 0.0 0.074 13.2 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|336477617|ref|YP_004616758.1| - 0.046 13.1 0.0 0.15 11.4 0.0 1.9 1 1 0 1 1 1 0 AAA-like domain ArsA_ATPase PF02374.10 gi|336477617|ref|YP_004616758.1| - 0.06 12.3 0.0 0.085 11.8 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase KTI12 PF08433.5 gi|336477617|ref|YP_004616758.1| - 0.07 12.3 0.1 0.12 11.5 0.0 1.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.4 gi|336477617|ref|YP_004616758.1| - 0.077 11.5 0.1 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|336477617|ref|YP_004616758.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase GCD14 PF08704.5 gi|336477618|ref|YP_004616759.1| - 1.4e-17 64.0 0.1 6.4e-16 58.6 0.0 2.1 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|336477618|ref|YP_004616759.1| - 2.7e-12 46.5 0.1 3.7e-12 46.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477618|ref|YP_004616759.1| - 1.2e-11 45.1 0.0 1.9e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336477618|ref|YP_004616759.1| - 3.5e-09 36.7 0.0 5.2e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336477618|ref|YP_004616759.1| - 6.8e-09 35.5 0.1 1e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|336477618|ref|YP_004616759.1| - 2.5e-07 30.1 0.6 3.4e-07 29.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|336477618|ref|YP_004616759.1| - 3.4e-06 27.4 0.0 5.6e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336477618|ref|YP_004616759.1| - 4.2e-06 25.9 0.0 6.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|336477618|ref|YP_004616759.1| - 5.8e-06 25.7 0.2 9e-06 25.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.6 gi|336477618|ref|YP_004616759.1| - 0.00016 21.3 0.0 0.00036 20.1 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.1 gi|336477618|ref|YP_004616759.1| - 0.00034 20.3 0.0 0.00078 19.2 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336477618|ref|YP_004616759.1| - 0.0011 18.4 0.1 0.084 12.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|336477618|ref|YP_004616759.1| - 0.0016 17.6 0.2 0.0023 17.0 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.13 gi|336477618|ref|YP_004616759.1| - 0.0052 16.3 0.0 0.0068 15.9 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_12 PF08242.7 gi|336477618|ref|YP_004616759.1| - 0.0074 16.7 0.1 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|336477618|ref|YP_004616759.1| - 0.034 13.2 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.12 gi|336477618|ref|YP_004616759.1| - 0.047 12.7 0.1 0.066 12.2 0.1 1.2 1 0 0 1 1 1 0 O-methyltransferase Rad9_Rad53_bind PF08605.5 gi|336477618|ref|YP_004616759.1| - 0.14 11.8 0.7 0.35 10.6 0.1 1.8 2 0 0 2 2 2 0 Fungal Rad9-like Rad53-binding HD PF01966.17 gi|336477619|ref|YP_004616760.1| - 5.4e-14 52.2 0.3 1.9e-13 50.4 0.2 2.0 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|336477619|ref|YP_004616760.1| - 0.00011 21.5 0.3 0.00042 19.6 0.0 2.0 2 0 0 2 2 2 1 HDOD domain IF-2B PF01008.12 gi|336477620|ref|YP_004616761.1| - 1.1e-84 283.7 0.0 1.3e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Sec61_beta PF03911.11 gi|336477621|ref|YP_004616762.1| - 2.4e-06 27.2 0.0 3.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family DUF2200 PF09966.4 gi|336477621|ref|YP_004616762.1| - 0.1 12.4 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2200) OpuAC PF04069.7 gi|336477622|ref|YP_004616763.1| - 1.6e-65 221.0 0.2 1.8e-65 220.8 0.2 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NUDIX PF00293.23 gi|336477622|ref|YP_004616763.1| - 0.072 12.7 0.5 1.4 8.5 0.0 2.4 2 1 0 2 2 2 0 NUDIX domain OpuAC PF04069.7 gi|336477623|ref|YP_004616764.1| - 1.5e-66 224.4 2.5 1.7e-66 224.1 1.7 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_5 PF00496.17 gi|336477623|ref|YP_004616764.1| - 0.0055 15.5 0.2 0.01 14.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle NMT1 PF09084.6 gi|336477623|ref|YP_004616764.1| - 0.095 12.2 0.1 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 NMT1/THI5 like BPD_transp_1 PF00528.17 gi|336477624|ref|YP_004616765.1| - 3.4e-24 85.3 12.3 3.4e-24 85.3 8.5 2.6 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4293 PF14126.1 gi|336477624|ref|YP_004616765.1| - 5.1 7.0 13.8 3.1 7.6 0.8 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4293) ABC_tran PF00005.22 gi|336477625|ref|YP_004616766.1| - 1.8e-34 119.0 0.0 1.1e-33 116.4 0.0 2.1 2 0 0 2 2 2 1 ABC transporter CBS PF00571.23 gi|336477625|ref|YP_004616766.1| - 2.8e-15 55.8 2.4 1.6e-08 34.1 0.0 2.8 2 0 0 2 2 2 2 CBS domain AAA_21 PF13304.1 gi|336477625|ref|YP_004616766.1| - 8.7e-10 39.0 0.1 1e-06 28.9 0.1 2.6 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|336477625|ref|YP_004616766.1| - 4.3e-07 28.8 1.4 0.027 13.0 0.0 3.4 3 1 0 3 3 3 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|336477625|ref|YP_004616766.1| - 4.3e-07 30.1 0.1 8.1e-06 26.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336477625|ref|YP_004616766.1| - 3.1e-05 24.0 0.2 7.5e-05 22.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336477625|ref|YP_004616766.1| - 0.00014 21.0 0.0 0.00026 20.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336477625|ref|YP_004616766.1| - 0.0002 20.8 0.0 0.00039 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336477625|ref|YP_004616766.1| - 0.00035 20.9 1.2 0.00035 20.9 0.8 1.9 2 1 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|336477625|ref|YP_004616766.1| - 0.002 17.8 0.5 0.18 11.5 0.1 2.7 2 1 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|336477625|ref|YP_004616766.1| - 0.0024 18.1 0.4 0.043 14.1 0.0 2.7 3 0 0 3 3 3 1 AAA domain T2SE PF00437.15 gi|336477625|ref|YP_004616766.1| - 0.0047 15.8 0.0 0.037 12.9 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_15 PF13175.1 gi|336477625|ref|YP_004616766.1| - 0.0055 15.8 1.2 1.1 8.2 1.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|336477625|ref|YP_004616766.1| - 0.008 16.0 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336477625|ref|YP_004616766.1| - 0.012 15.0 0.1 0.075 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|336477625|ref|YP_004616766.1| - 0.022 15.5 0.6 0.1 13.3 0.3 2.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|336477625|ref|YP_004616766.1| - 0.031 13.8 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|336477625|ref|YP_004616766.1| - 0.031 14.1 1.1 0.33 10.8 0.8 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|336477625|ref|YP_004616766.1| - 0.036 13.1 0.0 0.078 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|336477625|ref|YP_004616766.1| - 0.042 13.7 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|336477625|ref|YP_004616766.1| - 0.044 13.0 2.1 0.57 9.3 1.5 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|336477625|ref|YP_004616766.1| - 0.06 13.1 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain G-alpha PF00503.15 gi|336477625|ref|YP_004616766.1| - 0.079 11.6 0.0 0.13 10.8 0.0 1.6 1 1 0 1 1 1 0 G-protein alpha subunit cobW PF02492.14 gi|336477625|ref|YP_004616766.1| - 0.1 12.0 0.6 0.33 10.3 0.1 2.0 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain HMA PF00403.21 gi|336477626|ref|YP_004616767.1| - 5.1e-18 64.9 0.1 6.2e-18 64.7 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thioredoxin_7 PF13899.1 gi|336477626|ref|YP_004616767.1| - 0.015 15.3 0.0 0.019 14.9 0.0 1.2 1 1 0 1 1 1 0 Thioredoxin-like Tox-PL-2 PF15643.1 gi|336477626|ref|YP_004616767.1| - 0.039 13.9 0.0 0.039 13.9 0.0 1.1 1 0 0 1 1 1 0 Papain fold toxin 2 DUF2470 PF10615.4 gi|336477626|ref|YP_004616767.1| - 0.049 13.8 0.0 0.056 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2470) Thioredoxin_3 PF13192.1 gi|336477626|ref|YP_004616767.1| - 0.068 12.9 0.3 0.086 12.6 0.2 1.3 1 1 0 1 1 1 0 Thioredoxin domain PASTA PF03793.14 gi|336477626|ref|YP_004616767.1| - 0.082 12.5 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 PASTA domain SRP19 PF01922.12 gi|336477627|ref|YP_004616768.1| - 9.3e-27 93.4 0.6 1.1e-26 93.2 0.4 1.0 1 0 0 1 1 1 1 SRP19 protein SRP54_N PF02881.14 gi|336477627|ref|YP_004616768.1| - 0.054 13.5 0.3 0.31 11.1 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain A2L_zn_ribbon PF08792.5 gi|336477628|ref|YP_004616769.1| - 0.049 13.1 2.7 0.094 12.1 0.0 2.6 3 0 0 3 3 3 0 A2L zinc ribbon domain ROS_MUCR PF05443.6 gi|336477629|ref|YP_004616770.1| - 0.1 12.3 0.1 7.5 6.3 0.0 2.6 3 0 0 3 3 3 0 ROS/MUCR transcriptional regulator protein MtrE PF04206.7 gi|336477630|ref|YP_004616771.1| - 5.6e-120 399.4 13.7 6.4e-120 399.2 9.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E HIG_1_N PF04588.8 gi|336477630|ref|YP_004616771.1| - 1.9 8.3 6.3 20 4.9 0.0 3.8 4 0 0 4 4 4 0 Hypoxia induced protein conserved region DUF1269 PF06897.7 gi|336477630|ref|YP_004616771.1| - 3.4 7.7 9.8 19 5.3 1.9 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1269) MtrD PF04207.7 gi|336477631|ref|YP_004616772.1| - 2.5e-98 327.9 28.1 3.4e-98 327.4 19.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|336477632|ref|YP_004616773.1| - 3.8e-90 301.5 30.7 4.3e-90 301.3 21.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.7 gi|336477633|ref|YP_004616774.1| - 1.3e-34 118.1 0.0 1.5e-34 117.9 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.9 gi|336477634|ref|YP_004616775.1| - 7.6e-77 256.7 0.3 9.9e-77 256.3 0.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|336477634|ref|YP_004616775.1| - 0.012 14.8 1.2 0.035 13.3 0.8 1.8 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.5 gi|336477635|ref|YP_004616776.1| - 4.8e-26 89.7 0.5 5.5e-26 89.5 0.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) YqfD PF06898.6 gi|336477635|ref|YP_004616776.1| - 0.017 13.8 0.2 0.018 13.7 0.1 1.0 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD YqzM PF14141.1 gi|336477635|ref|YP_004616776.1| - 8.2 6.3 6.8 1e+02 2.8 4.7 2.1 1 1 0 1 1 1 0 YqzM-like protein MtrG PF04210.8 gi|336477636|ref|YP_004616777.1| - 1e-30 105.2 2.1 1.1e-30 105.0 1.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G YqfD PF06898.6 gi|336477636|ref|YP_004616777.1| - 0.0057 15.4 0.1 0.006 15.3 0.1 1.0 1 0 0 1 1 1 1 Putative stage IV sporulation protein YqfD DUF2536 PF10750.4 gi|336477636|ref|YP_004616777.1| - 0.014 14.9 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2536) Virul_fac_BrkB PF03631.10 gi|336477636|ref|YP_004616777.1| - 0.075 12.3 0.5 0.08 12.2 0.4 1.2 1 0 0 1 1 1 0 Virulence factor BrkB MtrH PF02007.13 gi|336477637|ref|YP_004616778.1| - 8.2e-139 461.6 2.8 9.4e-139 461.4 1.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit BPL_N PF09825.4 gi|336477639|ref|YP_004616780.1| - 0.0039 16.0 0.0 0.18 10.5 0.0 2.0 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal DUF1894 PF08979.6 gi|336477640|ref|YP_004616781.1| - 5.2e-32 109.7 0.1 5.9e-32 109.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) AIRS_C PF02769.17 gi|336477641|ref|YP_004616782.1| - 7.1e-18 65.0 0.0 1.3e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336477641|ref|YP_004616782.1| - 6.6e-16 58.3 0.4 1.4e-15 57.3 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.17 gi|336477641|ref|YP_004616782.1| - 0.0021 17.6 0.1 0.0055 16.3 0.0 1.7 2 0 0 2 2 2 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_6 PF14259.1 gi|336477641|ref|YP_004616782.1| - 0.068 13.1 0.1 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) AA_kinase PF00696.23 gi|336477642|ref|YP_004616783.1| - 7.9e-54 182.7 0.5 7.9e-54 182.7 0.4 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|336477642|ref|YP_004616783.1| - 8.6e-24 82.8 6.0 9.6e-12 44.2 0.1 2.8 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|336477642|ref|YP_004616783.1| - 2.1e-19 68.6 9.2 2.2e-09 36.6 0.2 3.4 4 0 0 4 4 4 2 ACT domain ChitinaseA_N PF08329.5 gi|336477643|ref|YP_004616784.1| - 0.0011 18.7 0.1 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Chitinase A, N-terminal domain DUF4625 PF15418.1 gi|336477643|ref|YP_004616784.1| - 0.13 12.4 2.7 0.12 12.5 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) ETRAMP PF09716.5 gi|336477643|ref|YP_004616784.1| - 0.63 10.0 2.4 2 8.4 0.2 2.6 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) ABC2_membrane_3 PF12698.2 gi|336477643|ref|YP_004616784.1| - 5.4 5.9 8.0 0.37 9.7 2.0 1.5 2 0 0 2 2 2 0 ABC-2 family transporter protein PhosphMutase PF10143.4 gi|336477644|ref|YP_004616785.1| - 1e-54 184.7 0.0 1.7e-54 184.0 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|336477644|ref|YP_004616785.1| - 3.4e-51 174.0 0.0 3.8e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.7 gi|336477644|ref|YP_004616785.1| - 0.044 13.4 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 PglZ domain Phosphodiest PF01663.17 gi|336477644|ref|YP_004616785.1| - 0.051 12.8 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase ATP-synt_S1 PF05827.7 gi|336477644|ref|YP_004616785.1| - 0.097 11.9 0.1 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Vacuolar ATP synthase subunit S1 (ATP6S1) Alk_phosphatase PF00245.15 gi|336477644|ref|YP_004616785.1| - 0.44 9.1 2.4 0.25 9.9 0.1 1.6 2 0 0 2 2 2 0 Alkaline phosphatase HSP20 PF00011.16 gi|336477645|ref|YP_004616786.1| - 8.3e-23 80.1 2.7 1e-22 79.8 1.9 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|336477645|ref|YP_004616786.1| - 3.3e-05 24.3 0.1 6e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|336477645|ref|YP_004616786.1| - 0.0029 17.2 1.1 0.0056 16.3 0.6 1.6 2 0 0 2 2 2 1 GvpH PIH1 PF08190.7 gi|336477645|ref|YP_004616786.1| - 0.022 14.2 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 DUF1380 PF07128.7 gi|336477645|ref|YP_004616786.1| - 0.058 13.2 0.2 0.096 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1380) F420_ligase PF01996.11 gi|336477646|ref|YP_004616787.1| - 4.9e-68 228.5 0.5 5.8e-68 228.3 0.4 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|336477647|ref|YP_004616788.1| - 3.1e-27 94.1 3.7 4.3e-27 93.7 2.6 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|336477647|ref|YP_004616788.1| - 0.00013 21.6 0.7 0.00016 21.3 0.5 1.2 1 0 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|336477647|ref|YP_004616788.1| - 0.002 17.9 1.4 0.0036 17.1 1.0 1.6 1 1 0 1 1 1 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|336477647|ref|YP_004616788.1| - 0.0027 17.4 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase MafB19-deam PF14437.1 gi|336477647|ref|YP_004616788.1| - 0.0037 16.9 2.2 0.005 16.4 1.5 1.2 1 0 0 1 1 1 1 MafB19-like deaminase zf-C3HC4 PF00097.20 gi|336477647|ref|YP_004616788.1| - 0.38 10.4 5.6 0.76 9.4 3.1 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SecD_SecF PF02355.11 gi|336477648|ref|YP_004616789.1| - 1.9e-36 125.0 16.9 1.9e-36 125.0 11.7 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|336477648|ref|YP_004616789.1| - 9.2e-07 27.7 0.0 2.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|336477648|ref|YP_004616789.1| - 0.00058 17.9 14.6 0.00085 17.3 10.1 1.2 1 0 0 1 1 1 1 Patched family DUF4097 PF13349.1 gi|336477648|ref|YP_004616789.1| - 0.035 13.6 0.8 0.12 11.9 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4097) SecD_SecF PF02355.11 gi|336477649|ref|YP_004616790.1| - 6.4e-16 58.0 9.5 1.1e-15 57.3 6.6 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|336477649|ref|YP_004616790.1| - 0.0011 18.0 0.1 0.0034 16.5 0.1 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|336477649|ref|YP_004616790.1| - 0.0027 16.4 12.7 0.0049 15.6 8.8 1.3 1 0 0 1 1 1 1 MMPL family DNA_pol3_delta2 PF13177.1 gi|336477650|ref|YP_004616791.1| - 2.7e-17 62.8 0.0 1.1e-16 60.8 0.0 1.9 2 1 0 2 2 2 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|336477650|ref|YP_004616791.1| - 4.2e-14 52.2 2.3 9.4e-14 51.1 0.4 2.2 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|336477650|ref|YP_004616791.1| - 1.5e-11 44.6 0.0 7.8e-11 42.2 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336477650|ref|YP_004616791.1| - 1.7e-06 28.2 0.1 1.3e-05 25.3 0.0 2.4 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336477650|ref|YP_004616791.1| - 6.5e-05 22.9 0.0 0.013 15.5 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|336477650|ref|YP_004616791.1| - 8.5e-05 21.4 0.0 0.00048 18.9 0.0 2.0 2 1 0 2 2 2 1 Rad17 cell cycle checkpoint protein TIP49 PF06068.8 gi|336477650|ref|YP_004616791.1| - 0.00019 20.3 0.0 0.0049 15.6 0.0 2.2 1 1 1 2 2 2 1 TIP49 C-terminus RuvB_N PF05496.7 gi|336477650|ref|YP_004616791.1| - 0.00029 19.9 0.0 0.045 12.8 0.0 2.8 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|336477650|ref|YP_004616791.1| - 0.00039 20.3 0.1 0.0016 18.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|336477650|ref|YP_004616791.1| - 0.0033 17.5 0.1 0.022 14.9 0.0 2.4 3 0 0 3 3 3 1 RNA helicase AAA_17 PF13207.1 gi|336477650|ref|YP_004616791.1| - 0.0053 17.5 0.0 0.014 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|336477650|ref|YP_004616791.1| - 0.0068 15.8 0.0 0.48 9.8 0.0 3.0 2 1 1 3 3 3 1 Sigma-54 interaction domain CbiA PF01656.18 gi|336477650|ref|YP_004616791.1| - 0.01 15.2 0.7 0.3 10.4 0.0 2.9 1 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|336477650|ref|YP_004616791.1| - 0.01 15.2 0.0 0.048 13.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Torsin PF06309.6 gi|336477650|ref|YP_004616791.1| - 0.022 14.6 0.1 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Torsin AAA_18 PF13238.1 gi|336477650|ref|YP_004616791.1| - 0.029 14.6 0.3 0.27 11.5 0.0 2.5 1 1 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|336477650|ref|YP_004616791.1| - 0.032 13.1 0.0 0.55 9.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|336477650|ref|YP_004616791.1| - 0.035 13.9 0.0 0.12 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|336477650|ref|YP_004616791.1| - 0.054 12.4 0.0 0.087 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|336477650|ref|YP_004616791.1| - 0.066 12.6 0.3 0.37 10.1 0.1 2.3 2 1 0 2 2 2 0 AAA domain MutS_I PF01624.15 gi|336477650|ref|YP_004616791.1| - 0.094 12.7 0.1 1.4 9.0 0.0 2.7 3 1 0 3 3 3 0 MutS domain I NACHT PF05729.7 gi|336477650|ref|YP_004616791.1| - 0.15 11.6 0.0 0.42 10.2 0.0 1.7 1 1 0 1 1 1 0 NACHT domain Radical_SAM PF04055.16 gi|336477651|ref|YP_004616792.1| - 1.2e-18 67.8 0.1 3.9e-18 66.1 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|336477651|ref|YP_004616792.1| - 1.8e-10 40.6 0.1 5e-10 39.2 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336477651|ref|YP_004616792.1| - 0.0094 16.0 0.1 0.04 14.0 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336477651|ref|YP_004616792.1| - 0.018 15.2 0.1 0.082 13.0 0.1 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TrmB PF01978.14 gi|336477652|ref|YP_004616793.1| - 2.5e-05 23.8 0.1 5.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|336477652|ref|YP_004616793.1| - 0.028 14.1 0.0 0.077 12.7 0.0 1.8 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF383 PF04063.9 gi|336477652|ref|YP_004616793.1| - 0.042 13.3 0.4 0.052 13.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF383) DUF16 PF01519.11 gi|336477652|ref|YP_004616793.1| - 0.19 11.9 1.7 0.24 11.6 0.2 1.8 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF4083 PF13314.1 gi|336477652|ref|YP_004616793.1| - 0.2 11.4 1.0 0.41 10.4 0.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) COG2 PF06148.6 gi|336477652|ref|YP_004616793.1| - 0.28 11.0 2.9 0.34 10.7 0.8 1.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CbiA PF01656.18 gi|336477653|ref|YP_004616794.1| - 2.9e-21 75.7 0.0 4.8e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336477653|ref|YP_004616794.1| - 4.1e-09 36.5 0.0 7.9e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|336477653|ref|YP_004616794.1| - 9e-07 28.2 0.1 7.1e-06 25.2 0.0 2.0 1 1 0 2 2 2 1 ATPase MipZ VirC1 PF07015.6 gi|336477653|ref|YP_004616794.1| - 0.00051 19.1 0.2 0.034 13.2 0.1 2.3 2 0 0 2 2 2 1 VirC1 protein YhjQ PF06564.7 gi|336477653|ref|YP_004616794.1| - 0.025 13.9 0.0 0.25 10.6 0.0 2.0 2 0 0 2 2 2 0 YhjQ protein AAA_25 PF13481.1 gi|336477653|ref|YP_004616794.1| - 0.042 13.2 1.1 0.38 10.1 0.8 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336477653|ref|YP_004616794.1| - 0.094 12.4 0.2 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 Part of AAA domain SRP54 PF00448.17 gi|336477653|ref|YP_004616794.1| - 0.14 11.5 0.2 5.6 6.3 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ArsA_ATPase PF02374.10 gi|336477653|ref|YP_004616794.1| - 0.69 8.9 2.5 5.4 5.9 1.7 2.2 1 1 0 1 1 1 0 Anion-transporting ATPase DUF2754 PF10953.3 gi|336477654|ref|YP_004616795.1| - 0.083 12.9 2.3 1.1 9.3 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) DUF4342 PF14242.1 gi|336477654|ref|YP_004616795.1| - 4.8 7.0 6.0 2.1 8.1 1.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) DUF1699 PF08004.6 gi|336477655|ref|YP_004616796.1| - 1.8e-61 205.4 0.5 2e-61 205.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) UPF0047 PF01894.12 gi|336477656|ref|YP_004616797.1| - 7.1e-34 116.1 0.0 8.5e-34 115.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 EI24 PF07264.6 gi|336477657|ref|YP_004616798.1| - 0.13 11.7 1.9 0.13 11.6 1.3 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) SUR7 PF06687.7 gi|336477657|ref|YP_004616798.1| - 1.5 8.2 4.2 1.6 8.2 2.9 1.0 1 0 0 1 1 1 0 SUR7/PalI family DIM PF08194.7 gi|336477657|ref|YP_004616798.1| - 2.3 8.2 6.6 3 7.8 0.8 2.2 2 0 0 2 2 2 0 DIM protein DUF3382 PF11862.3 gi|336477657|ref|YP_004616798.1| - 7 6.6 7.9 2.8 7.8 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) DHHA1 PF02272.14 gi|336477659|ref|YP_004616800.1| - 4.7e-16 58.2 0.1 9e-16 57.3 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|336477659|ref|YP_004616800.1| - 6.5e-16 58.2 0.5 9.9e-16 57.6 0.3 1.3 1 0 0 1 1 1 1 DHH family CDC45 PF02724.9 gi|336477659|ref|YP_004616800.1| - 0.019 13.0 0.0 0.03 12.3 0.0 1.3 1 0 0 1 1 1 0 CDC45-like protein DUF128 PF01995.11 gi|336477660|ref|YP_004616801.1| - 1.6e-91 305.4 0.3 1.7e-91 305.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 GPI PF06560.6 gi|336477661|ref|YP_004616802.1| - 1.4e-60 203.4 2.7 1.7e-60 203.1 1.9 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_1 PF00190.17 gi|336477661|ref|YP_004616802.1| - 0.0017 17.7 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.6 gi|336477661|ref|YP_004616802.1| - 0.0055 16.1 0.3 0.019 14.4 0.2 1.9 1 1 0 1 1 1 1 Cupin domain UvrC_HhH_N PF08459.6 gi|336477662|ref|YP_004616803.1| - 1e-51 174.5 0.0 1.8e-51 173.7 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.1 gi|336477662|ref|YP_004616803.1| - 7e-12 45.3 0.1 2.8e-11 43.3 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain GIY-YIG PF01541.19 gi|336477662|ref|YP_004616803.1| - 7e-11 42.3 2.5 1.7e-10 41.0 0.0 2.9 4 0 0 4 4 4 1 GIY-YIG catalytic domain HHH_2 PF12826.2 gi|336477662|ref|YP_004616803.1| - 1.8e-09 37.3 0.1 1.8e-08 34.1 0.0 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.18 gi|336477662|ref|YP_004616803.1| - 5.1e-08 32.1 0.0 6.2e-06 25.6 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif UVR PF02151.14 gi|336477662|ref|YP_004616803.1| - 5.7e-08 32.0 0.4 1.4e-07 30.7 0.2 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_3 PF12836.2 gi|336477662|ref|YP_004616803.1| - 0.00054 19.8 0.1 0.0049 16.7 0.0 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|336477662|ref|YP_004616803.1| - 0.022 14.9 0.2 1.8 8.7 0.0 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|336477662|ref|YP_004616803.1| - 0.097 12.9 0.0 0.36 11.0 0.0 2.0 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|336477662|ref|YP_004616803.1| - 0.1 12.6 0.0 14 6.0 0.0 2.7 2 0 0 2 2 2 0 IMS family HHH motif Transposase_20 PF02371.11 gi|336477662|ref|YP_004616803.1| - 0.1 12.6 0.0 12 6.0 0.0 2.7 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family RNase_H_2 PF13482.1 gi|336477663|ref|YP_004616804.1| - 2.8e-35 121.5 0.0 4e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|336477663|ref|YP_004616804.1| - 0.026 13.3 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|336477663|ref|YP_004616804.1| - 0.027 14.0 0.0 0.26 10.7 0.0 2.1 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Acetyltransf_1 PF00583.19 gi|336477664|ref|YP_004616805.1| - 3.8e-11 42.8 0.0 7e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336477664|ref|YP_004616805.1| - 6e-07 29.5 0.4 2.4e-06 27.6 0.3 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336477664|ref|YP_004616805.1| - 0.0039 17.2 0.0 1.9 8.6 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336477664|ref|YP_004616805.1| - 0.0044 16.7 0.0 0.14 11.9 0.0 2.4 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|336477664|ref|YP_004616805.1| - 0.063 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Ldh_1_N PF00056.18 gi|336477665|ref|YP_004616806.1| - 4.4e-40 136.7 0.6 7.3e-40 136.0 0.4 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|336477665|ref|YP_004616806.1| - 1.5e-30 106.1 0.0 2.3e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|336477665|ref|YP_004616806.1| - 0.0005 19.4 0.3 0.0027 17.0 0.0 2.2 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.9 gi|336477665|ref|YP_004616806.1| - 0.001 18.4 1.9 0.0065 15.8 1.3 2.0 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|336477665|ref|YP_004616806.1| - 0.057 13.2 0.2 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 ThiF family PRC PF05239.11 gi|336477666|ref|YP_004616807.1| - 3.1e-16 58.9 2.0 3.6e-16 58.7 1.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF4525 PF15027.1 gi|336477666|ref|YP_004616807.1| - 0.018 14.5 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) Thg1C PF14413.1 gi|336477667|ref|YP_004616808.1| - 3.7e-30 104.1 0.2 5.3e-30 103.5 0.1 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|336477667|ref|YP_004616808.1| - 2.1e-28 98.6 0.1 3.2e-28 98.0 0.1 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Na_H_Exchanger PF00999.16 gi|336477668|ref|YP_004616809.1| - 7.8e-61 205.6 62.8 9.8e-61 205.3 43.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|336477668|ref|YP_004616809.1| - 4.5e-21 74.9 0.0 9.4e-21 73.9 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|336477668|ref|YP_004616809.1| - 0.0043 16.9 0.0 0.0084 15.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Lipocalin_2 PF08212.7 gi|336477668|ref|YP_004616809.1| - 0.097 12.4 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Lipocalin-like domain NAD_Gly3P_dh_N PF01210.18 gi|336477668|ref|YP_004616809.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NikR_C PF08753.6 gi|336477669|ref|YP_004616810.1| - 1.8e-34 117.4 0.6 2.4e-34 117.0 0.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|336477669|ref|YP_004616810.1| - 3.7e-07 29.7 0.2 8.5e-07 28.6 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Bromo_TP PF07524.8 gi|336477669|ref|YP_004616810.1| - 0.035 13.8 0.0 0.091 12.4 0.0 1.6 2 0 0 2 2 2 0 Bromodomain associated HTH_5 PF01022.15 gi|336477670|ref|YP_004616811.1| - 1.6e-13 50.1 0.1 4.2e-13 48.7 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336477670|ref|YP_004616811.1| - 5.3e-11 42.1 0.0 1.4e-10 40.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2513 PF10711.4 gi|336477670|ref|YP_004616811.1| - 0.00028 20.9 0.1 0.00037 20.5 0.1 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_45 PF14947.1 gi|336477670|ref|YP_004616811.1| - 0.0003 20.5 0.2 0.00042 20.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.9 gi|336477670|ref|YP_004616811.1| - 0.017 14.8 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336477670|ref|YP_004616811.1| - 0.019 15.2 0.0 0.043 14.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|336477670|ref|YP_004616811.1| - 0.022 14.8 0.1 0.036 14.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1819 PF08849.6 gi|336477670|ref|YP_004616811.1| - 0.025 14.0 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative inner membrane protein (DUF1819) HTH_12 PF08461.5 gi|336477670|ref|YP_004616811.1| - 0.072 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain STN1_2 PF09170.5 gi|336477670|ref|YP_004616811.1| - 0.16 11.7 0.9 0.33 10.6 0.1 1.7 2 0 0 2 2 2 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Radical_SAM PF04055.16 gi|336477671|ref|YP_004616812.1| - 1.5e-17 64.2 1.5 4.5e-17 62.7 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336477671|ref|YP_004616812.1| - 1.1e-07 31.9 1.2 1.7e-07 31.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336477671|ref|YP_004616812.1| - 1.1e-06 28.7 0.5 6.3e-06 26.3 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S single cluster domain S-layer PF07752.6 gi|336477672|ref|YP_004616813.1| - 9.6e-153 506.7 11.2 1.4e-78 263.6 4.6 2.4 2 0 0 2 2 2 2 S-layer protein CARDB PF07705.6 gi|336477672|ref|YP_004616813.1| - 2e-08 34.2 1.1 2.5e-07 30.6 0.0 3.2 4 0 0 4 4 4 1 CARDB CarboxypepD_reg PF13620.1 gi|336477672|ref|YP_004616813.1| - 4.5e-06 26.6 7.0 0.098 12.7 0.8 4.5 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain BiPBP_C PF06832.7 gi|336477672|ref|YP_004616813.1| - 1.8e-05 24.5 0.0 0.11 12.3 0.0 3.9 3 0 0 3 3 3 1 Penicillin-Binding Protein C-terminus Family PEGA PF08308.6 gi|336477672|ref|YP_004616813.1| - 0.0015 18.2 3.1 2.4 7.9 0.0 3.9 4 0 0 4 4 4 2 PEGA domain Pilus_PilP PF11356.3 gi|336477672|ref|YP_004616813.1| - 0.0034 17.5 0.2 0.044 14.0 0.0 2.9 3 0 0 3 3 3 1 Type IV pilus biogenesis DUF2606 PF10794.4 gi|336477672|ref|YP_004616813.1| - 0.0036 16.7 0.1 0.52 9.7 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2606) DUF4198 PF10670.4 gi|336477672|ref|YP_004616813.1| - 0.019 14.9 1.4 2.3 8.1 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Big_3_2 PF12245.3 gi|336477672|ref|YP_004616813.1| - 0.033 13.7 0.0 1.7 8.2 0.0 2.8 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) tRNA-synt_1c_C PF03950.13 gi|336477672|ref|YP_004616813.1| - 0.058 13.0 0.0 4.3 6.9 0.0 3.2 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), anti-codon binding domain Big_3 PF07523.7 gi|336477672|ref|YP_004616813.1| - 0.36 10.9 6.8 1.7 8.7 0.5 4.5 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) Dodecin PF07311.7 gi|336477674|ref|YP_004616815.1| - 8.3e-14 51.3 0.3 1.4e-13 50.6 0.2 1.3 1 1 0 1 1 1 1 Dodecin TonB_2 PF13103.1 gi|336477674|ref|YP_004616815.1| - 0.032 14.2 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 TonB C terminal Fer4_7 PF12838.2 gi|336477675|ref|YP_004616816.1| - 3.1e-09 37.0 35.0 4.5e-07 30.1 6.3 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336477675|ref|YP_004616816.1| - 4.7e-09 35.7 8.7 5.1e-07 29.2 2.4 3.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|336477675|ref|YP_004616816.1| - 1.1e-08 34.3 16.5 2.2e-05 23.8 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477675|ref|YP_004616816.1| - 5.9e-08 32.4 6.8 5.9e-08 32.4 4.7 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336477675|ref|YP_004616816.1| - 3.5e-06 27.4 9.9 0.0014 19.1 1.5 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|336477675|ref|YP_004616816.1| - 3.7e-06 27.5 11.6 0.0013 19.4 1.5 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|336477675|ref|YP_004616816.1| - 5.8e-06 26.4 7.2 5.8e-06 26.4 5.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477675|ref|YP_004616816.1| - 7e-06 25.7 7.5 7e-06 25.7 5.2 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477675|ref|YP_004616816.1| - 0.0011 18.6 3.2 0.0011 18.6 2.2 3.9 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336477675|ref|YP_004616816.1| - 0.0048 17.2 10.1 0.17 12.2 0.4 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|336477675|ref|YP_004616816.1| - 0.012 15.4 2.5 0.012 15.4 1.7 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336477675|ref|YP_004616816.1| - 0.061 13.6 3.8 0.061 13.6 2.6 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|336477675|ref|YP_004616816.1| - 0.11 12.3 7.0 24 4.8 4.9 3.5 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.1 gi|336477675|ref|YP_004616816.1| - 0.41 10.7 17.5 0.6 10.1 5.3 3.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain EGF_2 PF07974.8 gi|336477675|ref|YP_004616816.1| - 3.7 7.7 10.4 14 5.9 0.4 2.6 2 0 0 2 2 2 0 EGF-like domain CGGC PF08821.6 gi|336477676|ref|YP_004616817.1| - 2.1e-38 130.6 2.0 2.3e-38 130.5 1.4 1.0 1 0 0 1 1 1 1 CGGC domain Sigma70_r1_1 PF03979.9 gi|336477676|ref|YP_004616817.1| - 0.29 11.1 0.9 1.1 9.2 0.6 1.9 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 zf-C2H2 PF00096.21 gi|336477676|ref|YP_004616817.1| - 1.2 9.6 4.3 7.3 7.1 0.2 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type Lactamase_B PF00753.22 gi|336477677|ref|YP_004616818.1| - 7.4e-20 71.4 0.0 1.1e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|336477677|ref|YP_004616818.1| - 1.6e-13 50.8 0.0 2.6e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|336477677|ref|YP_004616818.1| - 0.0019 17.8 0.1 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_3 PF12641.2 gi|336477677|ref|YP_004616818.1| - 0.0055 16.1 0.0 0.015 14.7 0.0 1.8 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|336477677|ref|YP_004616818.1| - 0.035 13.5 0.1 0.15 11.5 0.1 1.9 1 1 0 1 1 1 0 NADPH-dependent FMN reductase Rubrerythrin PF02915.12 gi|336477678|ref|YP_004616819.1| - 3.4e-15 56.5 5.0 3.9e-08 33.7 0.1 2.1 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.1 gi|336477678|ref|YP_004616819.1| - 4.7e-09 36.3 0.2 3e-08 33.7 0.1 2.0 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|336477678|ref|YP_004616819.1| - 0.00059 20.0 1.6 0.039 14.1 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|336477678|ref|YP_004616819.1| - 0.0015 18.2 5.5 0.0016 18.1 3.0 1.6 1 1 1 2 2 2 1 Ferritin-like domain AsiA PF09010.5 gi|336477678|ref|YP_004616819.1| - 0.038 13.8 0.6 0.15 11.9 0.1 2.1 2 0 0 2 2 2 0 Anti-Sigma Factor A DUF892 PF05974.7 gi|336477678|ref|YP_004616819.1| - 0.064 13.0 0.2 12 5.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF892) DrrA_P4M PF14860.1 gi|336477678|ref|YP_004616819.1| - 5 6.9 7.4 0.75 9.5 0.4 2.4 2 1 1 3 3 3 0 DrrA phosphatidylinositol 4-phosphate binding domain NAD_binding_5 PF07994.7 gi|336477679|ref|YP_004616820.1| - 3.1e-63 214.0 0.0 9.4e-63 212.4 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|336477679|ref|YP_004616820.1| - 1.7e-33 114.8 0.0 2.7e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Cu-oxidase_4 PF02578.10 gi|336477680|ref|YP_004616821.1| - 0.14 11.1 0.0 0.25 10.3 0.0 1.4 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase Flavoprotein PF02441.14 gi|336477681|ref|YP_004616822.1| - 2.2e-21 75.8 0.0 3e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Rubrerythrin PF02915.12 gi|336477682|ref|YP_004616823.1| - 2.1e-33 115.5 5.9 2.6e-33 115.2 4.1 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|336477682|ref|YP_004616823.1| - 1.8e-08 34.2 3.7 1.3e-07 31.4 2.6 2.0 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|336477682|ref|YP_004616823.1| - 9.5e-06 25.5 0.8 0.0038 17.0 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) Nudix_N_2 PF14803.1 gi|336477682|ref|YP_004616823.1| - 0.004 16.8 1.1 0.15 11.8 0.1 2.3 2 0 0 2 2 2 1 Nudix N-terminal HypA PF01155.14 gi|336477682|ref|YP_004616823.1| - 0.0044 16.6 0.9 0.008 15.8 0.6 1.5 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C2HC5 PF06221.8 gi|336477682|ref|YP_004616823.1| - 0.012 15.2 0.1 0.02 14.6 0.1 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type RNA_POL_M_15KD PF02150.11 gi|336477682|ref|YP_004616823.1| - 0.013 15.1 0.5 0.013 15.1 0.4 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit LPP20 PF02169.11 gi|336477682|ref|YP_004616823.1| - 0.016 15.2 0.6 0.75 9.9 0.0 2.3 2 1 0 2 2 2 0 LPP20 lipoprotein DUF3231 PF11553.3 gi|336477682|ref|YP_004616823.1| - 0.032 13.7 0.1 0.064 12.7 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3231) DUF3380 PF11860.3 gi|336477682|ref|YP_004616823.1| - 0.043 13.8 0.4 0.096 12.7 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3380) FCH PF00611.18 gi|336477682|ref|YP_004616823.1| - 0.097 12.8 0.3 0.25 11.5 0.1 1.8 1 1 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain DUF2383 PF09537.5 gi|336477682|ref|YP_004616823.1| - 0.1 12.8 1.7 0.32 11.2 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|336477682|ref|YP_004616823.1| - 0.25 11.2 3.9 0.74 9.7 2.8 1.7 1 1 0 1 1 1 0 Ferritin-like domain DUF3615 PF12274.3 gi|336477682|ref|YP_004616823.1| - 2.6 8.4 7.4 32 4.9 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3615) DUF4379 PF14311.1 gi|336477682|ref|YP_004616823.1| - 5.1 6.9 7.1 19 5.1 4.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) NAD_binding_1 PF00175.16 gi|336477683|ref|YP_004616824.1| - 4.3e-21 75.5 0.0 6e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|336477683|ref|YP_004616824.1| - 2.5e-15 56.3 0.0 3.7e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|336477683|ref|YP_004616824.1| - 2.7e-06 27.3 0.1 0.00011 22.1 0.0 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.7 gi|336477683|ref|YP_004616824.1| - 7e-06 25.8 0.0 1.6e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 FAD-binding domain FMN_red PF03358.10 gi|336477684|ref|YP_004616825.1| - 2.5e-29 101.7 0.0 3.5e-29 101.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336477684|ref|YP_004616825.1| - 0.00023 20.7 0.0 0.00032 20.2 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Cytochrome_C554 PF13435.1 gi|336477685|ref|YP_004616826.1| - 6e-14 52.2 4.4 3.6e-12 46.4 0.8 2.3 1 1 1 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|336477685|ref|YP_004616826.1| - 1.4e-05 24.6 13.3 0.031 13.8 3.6 3.6 1 1 1 2 2 2 2 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|336477685|ref|YP_004616826.1| - 0.023 15.0 15.6 5.6 7.3 1.3 3.5 1 1 2 3 3 3 0 Cytochrome c3 C1_1 PF00130.17 gi|336477685|ref|YP_004616826.1| - 0.11 12.2 11.4 1.6 8.4 0.1 3.7 3 1 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Paired_CXXCH_1 PF09699.5 gi|336477685|ref|YP_004616826.1| - 0.32 10.5 19.8 5.9 6.4 0.3 4.9 4 1 1 5 5 5 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_C552 PF02335.10 gi|336477685|ref|YP_004616826.1| - 0.37 9.4 10.0 0.9 8.1 0.2 2.9 1 1 1 2 2 2 0 Cytochrome c552 DZR PF12773.2 gi|336477685|ref|YP_004616826.1| - 0.54 10.1 7.5 1.8 8.4 0.1 3.5 3 1 0 3 3 3 0 Double zinc ribbon Cytochrom_NNT PF03264.9 gi|336477685|ref|YP_004616826.1| - 1.5 8.2 13.7 0.31 10.4 0.2 3.1 2 1 1 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region Cytochrome_CBB3 PF13442.1 gi|336477685|ref|YP_004616826.1| - 5.1 7.3 21.3 6.9 6.9 0.4 4.8 3 1 2 5 5 5 0 Cytochrome C oxidase, cbb3-type, subunit III CMD PF02627.15 gi|336477686|ref|YP_004616827.1| - 3.5e-19 68.4 0.7 4.8e-19 67.9 0.5 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|336477686|ref|YP_004616827.1| - 0.042 12.5 0.0 0.047 12.3 0.0 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) A_thal_3526 PF09713.5 gi|336477686|ref|YP_004616827.1| - 0.11 12.6 0.0 2.7 8.1 0.0 2.2 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) DUF2180 PF09947.4 gi|336477687|ref|YP_004616828.1| - 6.7e-26 89.8 9.0 7.5e-26 89.6 6.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|336477687|ref|YP_004616828.1| - 0.18 11.7 4.3 0.37 10.7 3.0 1.6 1 1 0 1 1 1 0 FYVE zinc finger zf-C3HC4_2 PF13923.1 gi|336477687|ref|YP_004616828.1| - 0.19 11.7 5.8 1.3 9.1 1.5 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-UBR PF02207.15 gi|336477687|ref|YP_004616828.1| - 1.4 8.6 4.7 1.6 8.5 0.7 2.0 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Gin PF10764.4 gi|336477687|ref|YP_004616828.1| - 1.6 8.4 9.1 10 5.9 0.0 3.0 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin zf-RING_5 PF14634.1 gi|336477687|ref|YP_004616828.1| - 2 8.1 7.5 2.7 7.7 2.4 2.3 2 1 0 2 2 2 0 zinc-RING finger domain DZR PF12773.2 gi|336477687|ref|YP_004616828.1| - 2.9 7.7 6.1 29 4.5 4.2 2.2 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|336477687|ref|YP_004616828.1| - 3.7 8.0 9.2 0.19 12.1 0.9 2.4 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon NinF PF05810.7 gi|336477687|ref|YP_004616828.1| - 7 6.5 6.6 18 5.2 0.1 2.3 2 1 0 2 2 2 0 NinF protein zf-B_box PF00643.19 gi|336477687|ref|YP_004616828.1| - 9.5 6.2 8.4 23 4.9 1.6 2.6 2 1 0 2 2 2 0 B-box zinc finger DUF2180 PF09947.4 gi|336477688|ref|YP_004616829.1| - 1.2e-23 82.5 8.0 1.5e-23 82.2 5.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|336477688|ref|YP_004616829.1| - 0.0016 18.2 2.2 0.0029 17.4 1.5 1.4 1 1 0 1 1 1 1 FYVE zinc finger zf-RING_3 PF14369.1 gi|336477688|ref|YP_004616829.1| - 0.035 14.1 3.1 2.6 8.0 0.5 2.5 2 1 0 2 2 2 0 zinc-finger Cytochrom_c3_2 PF14537.1 gi|336477688|ref|YP_004616829.1| - 0.079 13.3 1.2 7.5 6.9 0.1 2.1 2 0 0 2 2 2 0 Cytochrome c3 zf-AN1 PF01428.11 gi|336477688|ref|YP_004616829.1| - 0.08 12.8 3.4 0.35 10.7 0.6 2.4 2 1 1 3 3 3 0 AN1-like Zinc finger zf-UBR PF02207.15 gi|336477688|ref|YP_004616829.1| - 0.27 10.9 5.5 0.14 11.8 0.4 2.0 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Nudix_N_2 PF14803.1 gi|336477688|ref|YP_004616829.1| - 0.94 9.2 0.1 0.94 9.2 0.1 2.8 3 0 0 3 3 3 0 Nudix N-terminal DZR PF12773.2 gi|336477688|ref|YP_004616829.1| - 1.4 8.8 6.5 18 5.2 4.5 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|336477688|ref|YP_004616829.1| - 1.7 8.3 8.7 7.9 6.2 0.5 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) LIM PF00412.17 gi|336477688|ref|YP_004616829.1| - 3.8 7.6 6.5 9.2 6.4 0.1 2.4 2 1 0 2 2 2 0 LIM domain Prok-RING_2 PF14445.1 gi|336477688|ref|YP_004616829.1| - 3.8 7.5 6.4 8.1 6.4 2.1 2.3 2 1 0 2 2 2 0 Prokaryotic RING finger family 2 Desulfoferrod_N PF06397.7 gi|336477689|ref|YP_004616830.1| - 1.3e-15 56.4 9.7 1.3e-15 56.4 6.8 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-UDP PF14569.1 gi|336477689|ref|YP_004616830.1| - 0.003 17.2 1.9 0.003 17.2 1.3 1.1 1 0 0 1 1 1 1 Zinc-binding RING-finger Ribosomal_L37ae PF01780.14 gi|336477689|ref|YP_004616830.1| - 0.09 12.6 0.1 0.09 12.6 0.1 1.0 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF3449 PF11931.3 gi|336477689|ref|YP_004616830.1| - 0.1 12.1 0.2 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) A2L_zn_ribbon PF08792.5 gi|336477689|ref|YP_004616830.1| - 0.14 11.6 4.1 0.32 10.5 2.8 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336477689|ref|YP_004616830.1| - 0.29 10.9 3.1 0.44 10.3 0.3 2.0 1 1 1 2 2 2 0 PhnA Zinc-Ribbon RHH_1 PF01402.16 gi|336477690|ref|YP_004616831.1| - 0.023 14.5 1.2 6 6.9 0.0 2.2 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family ENT PF03735.9 gi|336477690|ref|YP_004616831.1| - 0.053 13.2 0.2 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 ENT domain HTH_1 PF00126.22 gi|336477690|ref|YP_004616831.1| - 0.055 13.2 0.0 7.6 6.3 0.0 2.2 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF3206 PF11472.3 gi|336477690|ref|YP_004616831.1| - 0.11 12.2 0.1 0.11 12.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) HTH_26 PF13443.1 gi|336477690|ref|YP_004616831.1| - 0.13 12.5 0.3 0.52 10.5 0.2 1.9 1 1 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF3194 PF11419.3 gi|336477690|ref|YP_004616831.1| - 0.13 12.4 0.7 0.35 11.1 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3194) ComC PF03047.9 gi|336477690|ref|YP_004616831.1| - 0.15 11.5 0.9 1.6 8.2 0.1 2.3 2 0 0 2 2 2 0 COMC family Smoothelin PF12510.3 gi|336477690|ref|YP_004616831.1| - 0.22 11.3 0.9 18 5.2 0.1 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein Pox_A_type_inc PF04508.7 gi|336477690|ref|YP_004616831.1| - 0.5 10.2 4.3 6.6 6.7 0.1 2.5 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat SSF PF00474.12 gi|336477692|ref|YP_004616833.1| - 7.4e-35 120.3 37.0 1e-34 119.9 25.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family PBP_like_2 PF12849.2 gi|336477693|ref|YP_004616834.1| - 3e-20 72.8 0.0 3.5e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|336477693|ref|YP_004616834.1| - 4.6e-08 32.9 0.0 7.3e-08 32.3 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|336477693|ref|YP_004616834.1| - 0.00087 18.2 0.0 0.0014 17.5 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain OpuAC PF04069.7 gi|336477693|ref|YP_004616834.1| - 0.026 13.8 0.0 0.036 13.3 0.0 1.4 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.2 gi|336477693|ref|YP_004616834.1| - 0.041 13.2 0.1 0.17 11.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|336477694|ref|YP_004616835.1| - 9.1e-13 48.1 19.8 9.1e-13 48.1 13.7 1.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ATP-synt_A PF00119.15 gi|336477694|ref|YP_004616835.1| - 0.64 9.4 10.8 3.4 7.1 7.5 2.2 1 1 0 1 1 1 0 ATP synthase A chain ABC_tran PF00005.22 gi|336477695|ref|YP_004616836.1| - 4.1e-29 101.6 0.0 6e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477695|ref|YP_004616836.1| - 1.3e-13 51.6 0.0 1e-06 28.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336477695|ref|YP_004616836.1| - 8.5e-07 28.4 0.1 0.00044 19.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336477695|ref|YP_004616836.1| - 1.8e-06 28.0 0.1 4.5e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336477695|ref|YP_004616836.1| - 6.1e-05 22.2 0.0 0.0001 21.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|336477695|ref|YP_004616836.1| - 0.00034 21.0 0.7 0.0008 19.7 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336477695|ref|YP_004616836.1| - 0.00038 20.5 0.7 0.01 16.0 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336477695|ref|YP_004616836.1| - 0.0004 19.8 0.0 0.00075 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|336477695|ref|YP_004616836.1| - 0.00076 18.1 0.3 0.087 11.3 0.0 3.0 2 1 1 3 3 3 1 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|336477695|ref|YP_004616836.1| - 0.0022 17.8 0.1 0.099 12.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|336477695|ref|YP_004616836.1| - 0.0036 16.4 0.7 1.1 8.1 0.0 2.5 3 0 0 3 3 3 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|336477695|ref|YP_004616836.1| - 0.0045 16.4 0.2 0.071 12.5 0.0 2.5 2 1 1 3 3 3 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|336477695|ref|YP_004616836.1| - 0.0069 15.8 0.2 0.029 13.8 0.1 1.9 1 1 0 1 1 1 1 AAA-like domain SbcCD_C PF13558.1 gi|336477695|ref|YP_004616836.1| - 0.007 16.2 0.1 0.09 12.7 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|336477695|ref|YP_004616836.1| - 0.0077 15.9 0.1 0.019 14.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|336477695|ref|YP_004616836.1| - 0.0089 14.7 0.1 0.039 12.6 0.0 1.9 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|336477695|ref|YP_004616836.1| - 0.013 16.2 0.2 0.064 14.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336477695|ref|YP_004616836.1| - 0.016 14.5 0.0 0.041 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain GTP-bdg_N PF13167.1 gi|336477695|ref|YP_004616836.1| - 0.04 14.0 0.1 0.45 10.6 0.1 2.3 2 0 0 2 2 2 0 GTP-binding GTPase N-terminal UPF0079 PF02367.12 gi|336477695|ref|YP_004616836.1| - 0.046 13.3 0.0 0.091 12.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|336477695|ref|YP_004616836.1| - 0.063 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336477695|ref|YP_004616836.1| - 0.073 13.0 0.4 0.17 11.8 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|336477695|ref|YP_004616836.1| - 0.11 12.2 0.1 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|336477695|ref|YP_004616836.1| - 0.11 12.1 0.7 0.19 11.4 0.0 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|336477695|ref|YP_004616836.1| - 0.14 12.4 1.7 1.1 9.5 1.2 2.1 1 1 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.7 gi|336477695|ref|YP_004616836.1| - 1.1 8.3 8.4 2.1 7.4 0.3 3.2 3 1 1 4 4 4 0 Gtr1/RagA G protein conserved region TOBE PF03459.12 gi|336477696|ref|YP_004616837.1| - 8e-16 57.8 0.1 1.3e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.22 gi|336477696|ref|YP_004616837.1| - 6.4e-07 29.0 0.0 9.7e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family tRNA_synt_2f PF02092.12 gi|336477696|ref|YP_004616837.1| - 0.077 11.5 0.0 0.079 11.4 0.0 1.1 1 0 0 1 1 1 0 Glycyl-tRNA synthetase beta subunit NPCBM_assoc PF10633.4 gi|336477697|ref|YP_004616838.1| - 0.00033 20.6 0.0 0.82 9.7 0.0 2.8 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|336477697|ref|YP_004616838.1| - 0.0067 16.4 0.0 0.098 12.7 0.0 2.4 2 1 0 2 2 2 1 CARDB CARDB PF07705.6 gi|336477698|ref|YP_004616839.1| - 8.8e-07 28.9 0.2 4.8e-06 26.5 0.2 2.1 2 0 0 2 2 2 1 CARDB NPCBM_assoc PF10633.4 gi|336477698|ref|YP_004616839.1| - 1.8e-06 27.9 0.0 0.058 13.4 0.0 2.7 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|336477698|ref|YP_004616839.1| - 0.0018 18.3 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF11 MMPL PF03176.10 gi|336477699|ref|YP_004616840.1| - 1.9e-52 178.0 11.6 2.5e-30 105.3 0.8 2.8 2 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|336477699|ref|YP_004616840.1| - 5.6e-16 58.3 12.3 2.3e-08 33.6 0.3 2.9 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|336477699|ref|YP_004616840.1| - 1.5e-09 36.4 19.2 2.8e-06 25.5 4.5 3.1 3 0 0 3 3 3 3 Patched family SecD_SecF PF02355.11 gi|336477699|ref|YP_004616840.1| - 3.7e-09 36.0 7.0 3.7e-09 36.0 4.8 2.4 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.14 gi|336477699|ref|YP_004616840.1| - 5.1e-09 34.1 13.3 6.1e-06 23.9 1.8 2.1 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family TetR_N PF00440.18 gi|336477700|ref|YP_004616841.1| - 1.3e-15 56.7 0.3 2e-15 56.1 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MRL1 PF13003.2 gi|336477700|ref|YP_004616841.1| - 0.0052 16.6 0.0 0.0065 16.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L1 TetR_C_3 PF08362.6 gi|336477700|ref|YP_004616841.1| - 0.012 15.3 0.2 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 YcdC-like protein, C-terminal region HTH_Tnp_1_2 PF13022.1 gi|336477700|ref|YP_004616841.1| - 0.084 12.6 0.0 0.15 11.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase Lactamase_B_3 PF13483.1 gi|336477701|ref|YP_004616842.1| - 6.1e-39 133.3 0.1 7.2e-39 133.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|336477701|ref|YP_004616842.1| - 1.7e-20 73.3 0.2 2.3e-20 72.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336477701|ref|YP_004616842.1| - 0.0026 17.4 1.9 0.51 9.9 0.3 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Rpr2 PF04032.11 gi|336477702|ref|YP_004616843.1| - 1.2e-19 69.9 2.2 1.5e-19 69.6 1.6 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|336477702|ref|YP_004616843.1| - 0.038 13.8 3.4 0.038 13.8 2.4 1.7 2 0 0 2 2 2 0 Putative zinc ribbon domain Autoind_bind PF03472.10 gi|336477702|ref|YP_004616843.1| - 0.06 12.6 0.0 0.067 12.4 0.0 1.1 1 0 0 1 1 1 0 Autoinducer binding domain FeoB_C PF07664.7 gi|336477703|ref|YP_004616844.1| - 0.65 9.4 3.8 0.96 8.9 2.6 1.2 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus TrmB PF01978.14 gi|336477704|ref|YP_004616845.1| - 4e-07 29.6 0.1 4.9e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|336477704|ref|YP_004616845.1| - 8.5e-06 25.4 0.0 9.4e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|336477704|ref|YP_004616845.1| - 0.00038 19.9 0.2 0.00041 19.8 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|336477704|ref|YP_004616845.1| - 0.0021 17.7 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336477704|ref|YP_004616845.1| - 0.0022 17.6 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|336477704|ref|YP_004616845.1| - 0.0046 16.9 0.0 0.0059 16.6 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_27 PF13463.1 gi|336477704|ref|YP_004616845.1| - 0.0072 16.6 0.0 0.0086 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|336477704|ref|YP_004616845.1| - 0.0073 16.2 0.1 0.012 15.5 0.0 1.3 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.1 gi|336477704|ref|YP_004616845.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.1 gi|336477704|ref|YP_004616845.1| - 0.019 14.7 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|336477704|ref|YP_004616845.1| - 0.036 13.9 0.2 0.087 12.7 0.1 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|336477704|ref|YP_004616845.1| - 0.073 13.2 0.0 0.088 12.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Rio2_N PF09202.6 gi|336477704|ref|YP_004616845.1| - 0.079 13.0 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_IclR PF09339.5 gi|336477704|ref|YP_004616845.1| - 0.093 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|336477705|ref|YP_004616846.1| - 0.0031 17.1 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|336477705|ref|YP_004616846.1| - 0.005 16.2 0.0 0.0082 15.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336477705|ref|YP_004616846.1| - 0.0067 16.0 0.0 0.0083 15.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336477705|ref|YP_004616846.1| - 0.012 14.9 0.0 0.028 13.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|336477705|ref|YP_004616846.1| - 0.021 14.4 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_9 PF08221.6 gi|336477705|ref|YP_004616846.1| - 0.021 14.7 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.12 gi|336477705|ref|YP_004616846.1| - 0.041 13.3 0.0 0.067 12.7 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.1 gi|336477705|ref|YP_004616846.1| - 0.089 12.8 0.0 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.18 gi|336477705|ref|YP_004616846.1| - 0.094 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 MerR family regulatory protein HATPase_c PF02518.21 gi|336477706|ref|YP_004616847.1| - 1.5e-29 101.9 0.6 2.9e-29 101.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|336477706|ref|YP_004616847.1| - 8.9e-16 57.7 0.1 4.5e-15 55.5 0.0 2.3 2 1 1 3 3 3 1 PAS fold GAF_2 PF13185.1 gi|336477706|ref|YP_004616847.1| - 1.5e-15 57.9 0.0 2.4e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|336477706|ref|YP_004616847.1| - 3.8e-06 27.2 0.2 2.7e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|336477706|ref|YP_004616847.1| - 8.9e-05 22.2 0.0 0.00057 19.6 0.0 2.4 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|336477706|ref|YP_004616847.1| - 0.00015 21.8 0.0 0.0003 20.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|336477706|ref|YP_004616847.1| - 0.0079 16.3 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 GAF domain DUF2315 PF10231.4 gi|336477706|ref|YP_004616847.1| - 0.044 13.6 1.9 0.36 10.7 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2315) DUF4574 PF15141.1 gi|336477706|ref|YP_004616847.1| - 0.099 12.3 0.8 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4574) DUF1724 PF08350.5 gi|336477707|ref|YP_004616848.1| - 4e-26 90.3 0.8 1.3e-25 88.6 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|336477707|ref|YP_004616848.1| - 3.2e-06 26.7 0.2 7.6e-06 25.5 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|336477707|ref|YP_004616848.1| - 0.00079 19.0 0.1 0.0024 17.5 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|336477707|ref|YP_004616848.1| - 0.0031 17.2 1.2 0.0097 15.6 0.8 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|336477707|ref|YP_004616848.1| - 0.009 15.6 0.4 0.021 14.4 0.3 1.6 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|336477707|ref|YP_004616848.1| - 0.018 15.0 0.2 0.047 13.7 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|336477707|ref|YP_004616848.1| - 0.02 14.6 0.1 0.092 12.4 0.1 2.1 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|336477707|ref|YP_004616848.1| - 0.56 9.6 5.0 0.39 10.1 1.4 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding URO-D PF01208.12 gi|336477708|ref|YP_004616849.1| - 2.5e-55 187.7 0.0 1.8e-54 184.9 0.0 2.1 2 1 1 3 3 3 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|336477708|ref|YP_004616849.1| - 4.1e-24 84.7 0.0 3.1e-23 81.9 0.1 2.3 3 0 0 3 3 3 1 B12 binding domain B12-binding_2 PF02607.12 gi|336477708|ref|YP_004616849.1| - 8.6e-16 57.7 0.1 2.8e-15 56.1 0.1 2.0 1 0 0 1 1 1 1 B12 binding domain DUF1018 PF06252.7 gi|336477708|ref|YP_004616849.1| - 0.11 13.0 0.1 1.9 9.0 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1018) Hydantoinase_A PF01968.13 gi|336477709|ref|YP_004616850.1| - 1.2e-77 260.8 0.0 1.2e-77 260.8 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|336477709|ref|YP_004616850.1| - 6.9e-38 129.8 3.4 2.1e-35 121.8 0.2 3.1 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|336477709|ref|YP_004616850.1| - 4.2e-05 22.0 3.6 0.0023 16.3 0.1 2.2 2 0 0 2 2 2 2 MutL protein HTH_24 PF13412.1 gi|336477709|ref|YP_004616850.1| - 0.03 13.7 0.5 0.072 12.4 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding YycH PF07435.6 gi|336477709|ref|YP_004616850.1| - 0.057 12.1 0.8 0.093 11.4 0.5 1.2 1 0 0 1 1 1 0 YycH protein Sigma70_r4 PF04545.11 gi|336477709|ref|YP_004616850.1| - 0.14 11.5 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Cpn60_TCP1 PF00118.19 gi|336477710|ref|YP_004616851.1| - 9.1e-107 357.6 0.7 1e-106 357.4 0.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.12 gi|336477710|ref|YP_004616851.1| - 0.018 14.7 0.1 0.092 12.4 0.0 2.1 2 0 0 2 2 2 0 DAK2 domain URO-D PF01208.12 gi|336477711|ref|YP_004616852.1| - 2e-74 250.5 0.0 2.3e-74 250.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) cobW PF02492.14 gi|336477712|ref|YP_004616853.1| - 4.1e-19 68.7 0.0 5e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|336477712|ref|YP_004616853.1| - 1.9e-05 24.4 0.4 4.1e-05 23.3 0.3 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|336477712|ref|YP_004616853.1| - 0.00024 21.9 0.2 0.00039 21.2 0.2 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|336477712|ref|YP_004616853.1| - 0.00043 19.7 0.1 0.00091 18.7 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain LpxK PF02606.9 gi|336477712|ref|YP_004616853.1| - 0.00064 18.7 0.6 0.0071 15.3 0.4 2.0 1 1 1 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase PduV-EutP PF10662.4 gi|336477712|ref|YP_004616853.1| - 0.0021 17.5 2.2 0.13 11.7 0.2 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|336477712|ref|YP_004616853.1| - 0.0025 18.1 0.1 0.0049 17.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|336477712|ref|YP_004616853.1| - 0.0027 16.9 0.0 0.0036 16.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|336477712|ref|YP_004616853.1| - 0.0029 17.5 0.0 0.0056 16.6 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|336477712|ref|YP_004616853.1| - 0.0032 17.3 0.0 0.0066 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|336477712|ref|YP_004616853.1| - 0.0033 17.1 0.3 0.0057 16.3 0.2 1.5 1 1 0 1 1 1 1 Archaeal ATPase ArgK PF03308.11 gi|336477712|ref|YP_004616853.1| - 0.0043 15.8 3.2 0.045 12.5 2.3 2.1 1 1 0 1 1 1 1 ArgK protein Zeta_toxin PF06414.7 gi|336477712|ref|YP_004616853.1| - 0.017 14.1 0.2 0.026 13.6 0.2 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|336477712|ref|YP_004616853.1| - 0.025 14.0 0.3 0.047 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain DUF815 PF05673.8 gi|336477712|ref|YP_004616853.1| - 0.026 13.4 0.1 0.048 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ATP_bind_2 PF03668.10 gi|336477712|ref|YP_004616853.1| - 0.03 13.4 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 P-loop ATPase protein family AAA_16 PF13191.1 gi|336477712|ref|YP_004616853.1| - 0.033 14.1 0.1 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|336477712|ref|YP_004616853.1| - 0.036 13.4 0.0 0.05 12.9 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_25 PF13481.1 gi|336477712|ref|YP_004616853.1| - 0.036 13.4 0.1 0.1 11.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|336477712|ref|YP_004616853.1| - 0.042 14.3 0.1 0.09 13.2 0.1 1.6 1 0 0 1 1 1 0 Miro-like protein AAA PF00004.24 gi|336477712|ref|YP_004616853.1| - 0.052 13.7 0.0 0.1 12.7 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|336477712|ref|YP_004616853.1| - 0.053 13.0 0.6 0.15 11.5 0.1 1.8 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.1 gi|336477712|ref|YP_004616853.1| - 0.063 13.1 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|336477712|ref|YP_004616853.1| - 0.079 12.9 0.1 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|336477712|ref|YP_004616853.1| - 0.098 11.8 0.3 0.89 8.7 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.1 gi|336477712|ref|YP_004616853.1| - 0.23 11.0 0.5 11 5.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain HATPase_c PF02518.21 gi|336477713|ref|YP_004616854.1| - 2.6e-35 120.5 0.2 6.8e-35 119.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|336477713|ref|YP_004616854.1| - 3.5e-21 76.2 0.0 6e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|336477713|ref|YP_004616854.1| - 2.1e-16 59.6 4.2 7.6e-16 57.8 0.0 3.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|336477713|ref|YP_004616854.1| - 3.9e-08 33.6 0.0 9.8e-08 32.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|336477713|ref|YP_004616854.1| - 5.3e-05 22.9 0.0 0.00022 20.9 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|336477713|ref|YP_004616854.1| - 0.00014 21.5 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|336477713|ref|YP_004616854.1| - 0.00069 19.2 0.0 0.0019 17.9 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_4 PF08448.5 gi|336477713|ref|YP_004616854.1| - 0.00081 19.4 0.0 0.002 18.1 0.0 1.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|336477713|ref|YP_004616854.1| - 0.0019 18.0 0.1 0.011 15.5 0.0 2.4 2 0 0 2 2 2 1 PAS domain DUF677 PF05055.7 gi|336477713|ref|YP_004616854.1| - 0.018 13.7 2.5 0.3 9.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF677) HATPase_c_2 PF13581.1 gi|336477713|ref|YP_004616854.1| - 0.032 14.0 0.0 0.068 12.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MitMem_reg PF13012.1 gi|336477713|ref|YP_004616854.1| - 0.041 13.9 2.5 1.5 8.9 0.0 3.2 3 0 0 3 3 3 0 Maintenance of mitochondrial structure and function Exonuc_VII_S PF02609.11 gi|336477714|ref|YP_004616855.1| - 1.7e-20 72.5 4.1 2.2e-20 72.1 2.9 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit YihI PF04220.7 gi|336477714|ref|YP_004616855.1| - 0.011 15.0 6.2 0.024 13.9 4.3 1.6 1 1 0 1 1 1 0 Der GTPase activator (YihI) KxDL PF10241.4 gi|336477714|ref|YP_004616855.1| - 0.028 14.3 0.2 0.036 13.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein Vps53_N PF04100.7 gi|336477714|ref|YP_004616855.1| - 0.033 12.9 0.8 0.037 12.8 0.5 1.0 1 0 0 1 1 1 0 Vps53-like, N-terminal DUF3323 PF11796.3 gi|336477714|ref|YP_004616855.1| - 0.071 12.4 0.2 0.083 12.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) HR1 PF02185.11 gi|336477714|ref|YP_004616855.1| - 0.12 12.0 5.5 1.7 8.4 0.2 2.1 1 1 1 2 2 2 0 Hr1 repeat DUF1465 PF07323.7 gi|336477714|ref|YP_004616855.1| - 0.13 11.7 0.7 1 8.9 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) HD_3 PF13023.1 gi|336477714|ref|YP_004616855.1| - 0.22 11.2 1.4 0.28 10.8 1.0 1.2 1 0 0 1 1 1 0 HD domain bZIP_1 PF00170.16 gi|336477714|ref|YP_004616855.1| - 0.67 9.9 7.4 2.5 8.1 0.3 2.4 1 1 1 2 2 2 0 bZIP transcription factor Exonuc_VII_L PF02601.10 gi|336477715|ref|YP_004616856.1| - 3.5e-79 266.2 0.0 2e-69 234.2 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|336477715|ref|YP_004616856.1| - 3.2e-32 110.3 0.0 5.9e-32 109.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|336477715|ref|YP_004616856.1| - 3.5e-05 23.5 0.0 7.3e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RNA_pol_Rpb4 PF03874.11 gi|336477715|ref|YP_004616856.1| - 0.029 14.3 0.1 0.089 12.7 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb4 Tox-MPTase4 PF15640.1 gi|336477715|ref|YP_004616856.1| - 0.047 13.3 0.3 0.12 11.9 0.2 1.7 1 0 0 1 1 1 0 Metallopeptidase toxin 4 RBD-FIP PF09457.5 gi|336477715|ref|YP_004616856.1| - 0.047 13.4 0.4 0.28 11.0 0.0 2.5 2 0 0 2 2 2 0 FIP domain DUF1565 PF07602.6 gi|336477716|ref|YP_004616857.1| - 1.3e-06 27.7 21.2 0.015 14.4 8.0 3.2 2 1 1 3 3 3 3 Protein of unknown function (DUF1565) Pectinesterase PF01095.14 gi|336477716|ref|YP_004616857.1| - 0.00055 18.5 4.8 0.18 10.3 0.2 2.3 2 0 0 2 2 2 2 Pectinesterase H_lectin PF09458.5 gi|336477716|ref|YP_004616857.1| - 0.14 11.8 2.6 5 6.8 0.0 3.5 3 1 1 4 4 4 0 H-type lectin domain NosD PF05048.8 gi|336477717|ref|YP_004616858.1| - 2e-15 56.6 31.3 7.9e-12 44.8 6.1 3.8 3 1 0 4 4 4 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|336477717|ref|YP_004616858.1| - 2.8e-15 56.4 48.8 4.2e-10 39.5 12.1 4.4 3 1 1 4 4 4 2 Right handed beta helix region Pectinesterase PF01095.14 gi|336477717|ref|YP_004616858.1| - 0.0043 15.6 1.0 0.056 12.0 0.7 2.1 2 0 0 2 2 2 1 Pectinesterase DUF1565 PF07602.6 gi|336477717|ref|YP_004616858.1| - 0.031 13.4 30.5 0.23 10.5 2.1 4.8 2 2 1 3 3 3 0 Protein of unknown function (DUF1565) DUF167 PF02594.11 gi|336477719|ref|YP_004616860.1| - 2e-18 66.0 0.0 2.5e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim_4 PF13662.1 gi|336477720|ref|YP_004616861.1| - 1.9e-08 34.2 0.0 3.5e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|336477720|ref|YP_004616861.1| - 4.5e-06 26.5 0.1 1.5e-05 24.9 0.1 1.9 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|336477720|ref|YP_004616861.1| - 5.3e-06 26.6 0.0 7.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.1 gi|336477720|ref|YP_004616861.1| - 4.2e-05 23.7 0.0 5.4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Toprim domain EF-hand_9 PF14658.1 gi|336477720|ref|YP_004616861.1| - 0.049 13.5 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain GTP_cyclohydro2 PF00925.15 gi|336477720|ref|YP_004616861.1| - 0.12 11.6 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 GTP cyclohydrolase II AA_kinase PF00696.23 gi|336477721|ref|YP_004616862.1| - 1.4e-41 142.6 0.1 1.9e-41 142.2 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.15 gi|336477721|ref|YP_004616862.1| - 4.1e-18 64.8 0.1 7.6e-18 64.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain Aldedh PF00171.17 gi|336477722|ref|YP_004616863.1| - 4.3e-13 48.3 0.1 8.2e-10 37.5 0.0 2.5 2 1 0 2 2 2 2 Aldehyde dehydrogenase family DUF356 PF04009.7 gi|336477723|ref|YP_004616864.1| - 2.3e-39 133.7 0.0 2.6e-39 133.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) MGAT2 PF05060.9 gi|336477723|ref|YP_004616864.1| - 0.032 13.1 0.0 0.039 12.8 0.0 1.1 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) P5CR_dimer PF14748.1 gi|336477724|ref|YP_004616865.1| - 4.4e-41 139.2 0.2 7.5e-41 138.4 0.2 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|336477724|ref|YP_004616865.1| - 2.3e-21 75.9 0.9 6.5e-21 74.5 0.2 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336477724|ref|YP_004616865.1| - 1.7e-06 27.9 0.3 5.9e-06 26.2 0.2 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|336477724|ref|YP_004616865.1| - 2.6e-06 27.2 3.7 1.7e-05 24.6 2.5 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|336477724|ref|YP_004616865.1| - 0.00088 18.7 0.2 0.0026 17.1 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA PDH PF02153.12 gi|336477724|ref|YP_004616865.1| - 0.0077 15.1 0.5 0.032 13.1 0.3 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase DapB_N PF01113.15 gi|336477724|ref|YP_004616865.1| - 0.042 13.7 0.2 0.11 12.3 0.0 1.9 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|336477724|ref|YP_004616865.1| - 0.051 14.0 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold HTH_3 PF01381.17 gi|336477725|ref|YP_004616866.1| - 7.3e-13 48.1 0.8 1.1e-12 47.5 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|336477725|ref|YP_004616866.1| - 2e-08 34.3 0.0 3.5e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|336477725|ref|YP_004616866.1| - 5.1e-08 32.8 0.6 9.5e-08 31.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|336477725|ref|YP_004616866.1| - 0.00029 20.4 0.5 0.00052 19.6 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-PHD-like PF15446.1 gi|336477725|ref|YP_004616866.1| - 0.0043 16.3 0.5 0.0053 16.0 0.3 1.1 1 0 0 1 1 1 1 PHD/FYVE-zinc-finger like domain HTH_32 PF13565.1 gi|336477725|ref|YP_004616866.1| - 0.031 15.0 0.7 0.063 14.0 0.5 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF3987 PF13148.1 gi|336477725|ref|YP_004616866.1| - 0.034 12.6 0.5 0.039 12.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) HTH_37 PF13744.1 gi|336477725|ref|YP_004616866.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain VBS PF08913.5 gi|336477725|ref|YP_004616866.1| - 0.07 13.3 0.0 0.12 12.6 0.0 1.4 1 1 0 1 1 1 0 Vinculin Binding Site Med21 PF11221.3 gi|336477725|ref|YP_004616866.1| - 5.1 7.0 8.4 1.5 8.7 1.3 2.2 1 1 1 2 2 2 0 Subunit 21 of Mediator complex AAA PF00004.24 gi|336477726|ref|YP_004616867.1| - 1.3e-44 151.5 0.9 6.9e-44 149.2 0.0 2.4 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336477726|ref|YP_004616867.1| - 3.2e-09 36.6 0.2 2.1e-08 34.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|336477726|ref|YP_004616867.1| - 8e-08 32.4 0.2 8.9e-07 29.0 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336477726|ref|YP_004616867.1| - 1.4e-06 28.5 0.3 0.0012 19.0 0.0 2.8 1 1 1 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|336477726|ref|YP_004616867.1| - 2.4e-06 27.5 0.0 5.8e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|336477726|ref|YP_004616867.1| - 7.9e-06 24.9 0.0 1.8e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|336477726|ref|YP_004616867.1| - 4.8e-05 23.0 0.4 0.00014 21.5 0.3 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|336477726|ref|YP_004616867.1| - 4.9e-05 24.1 0.6 0.00034 21.4 0.0 2.5 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|336477726|ref|YP_004616867.1| - 7.4e-05 22.6 0.0 0.0012 18.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|336477726|ref|YP_004616867.1| - 9.5e-05 21.5 0.0 0.00019 20.5 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|336477726|ref|YP_004616867.1| - 0.00013 22.0 0.1 0.00028 20.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|336477726|ref|YP_004616867.1| - 0.00082 18.8 1.4 0.075 12.4 0.1 2.6 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336477726|ref|YP_004616867.1| - 0.00082 19.6 0.6 0.0067 16.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|336477726|ref|YP_004616867.1| - 0.00083 18.8 0.0 0.002 17.5 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Troponin PF00992.15 gi|336477726|ref|YP_004616867.1| - 0.0011 19.0 3.6 0.0029 17.6 2.5 1.7 1 0 0 1 1 1 1 Troponin TIP49 PF06068.8 gi|336477726|ref|YP_004616867.1| - 0.0025 16.6 0.0 0.0045 15.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_24 PF13479.1 gi|336477726|ref|YP_004616867.1| - 0.0033 17.0 0.9 0.02 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|336477726|ref|YP_004616867.1| - 0.0036 17.3 0.0 0.024 14.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|336477726|ref|YP_004616867.1| - 0.0039 17.0 0.1 0.0084 15.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain ERM PF00769.14 gi|336477726|ref|YP_004616867.1| - 0.0041 16.6 3.2 0.0085 15.6 2.2 1.4 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Arch_ATPase PF01637.13 gi|336477726|ref|YP_004616867.1| - 0.0043 16.7 1.1 0.54 9.9 0.0 2.8 2 1 1 3 3 3 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|336477726|ref|YP_004616867.1| - 0.0068 15.8 0.1 0.091 12.2 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|336477726|ref|YP_004616867.1| - 0.007 15.5 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|336477726|ref|YP_004616867.1| - 0.0097 15.0 0.0 0.025 13.7 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin RNA_helicase PF00910.17 gi|336477726|ref|YP_004616867.1| - 0.013 15.6 0.0 0.034 14.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.6 gi|336477726|ref|YP_004616867.1| - 0.015 14.9 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|336477726|ref|YP_004616867.1| - 0.021 14.3 0.0 0.057 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|336477726|ref|YP_004616867.1| - 0.026 13.6 5.7 0.035 13.2 0.0 3.1 3 1 1 4 4 4 0 KaiC AAA_11 PF13086.1 gi|336477726|ref|YP_004616867.1| - 0.026 14.0 1.0 0.93 9.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|336477726|ref|YP_004616867.1| - 0.028 13.2 0.0 0.14 10.9 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Ax_dynein_light PF10211.4 gi|336477726|ref|YP_004616867.1| - 0.031 14.1 2.4 0.058 13.2 1.6 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain Parvo_NS1 PF01057.12 gi|336477726|ref|YP_004616867.1| - 0.037 12.8 0.0 0.066 12.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|336477726|ref|YP_004616867.1| - 0.069 12.3 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|336477726|ref|YP_004616867.1| - 0.096 12.9 0.5 1 9.6 0.0 2.5 2 1 0 2 2 2 0 ABC transporter ADIP PF11559.3 gi|336477726|ref|YP_004616867.1| - 0.096 12.5 3.6 0.21 11.5 2.5 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding NACHT PF05729.7 gi|336477726|ref|YP_004616867.1| - 0.12 11.9 0.1 0.44 10.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.10 gi|336477726|ref|YP_004616867.1| - 0.14 11.8 1.9 1.1 8.9 0.1 2.9 2 1 1 3 3 3 0 NTPase HALZ PF02183.13 gi|336477726|ref|YP_004616867.1| - 0.15 11.7 6.1 1.2 8.9 4.3 2.2 1 1 0 1 1 1 0 Homeobox associated leucine zipper AAA_23 PF13476.1 gi|336477726|ref|YP_004616867.1| - 2.4 8.4 5.9 26 5.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF99 PF01949.11 gi|336477727|ref|YP_004616868.1| - 7.5e-64 214.2 1.0 8.5e-64 214.1 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PGM_PMM_I PF02878.11 gi|336477728|ref|YP_004616869.1| - 4.3e-41 139.6 0.3 1.6e-40 137.7 0.1 2.1 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|336477728|ref|YP_004616869.1| - 6.6e-25 87.4 0.0 1.3e-24 86.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|336477728|ref|YP_004616869.1| - 4.5e-23 81.4 0.0 1e-22 80.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|336477728|ref|YP_004616869.1| - 1e-11 44.6 0.0 2.7e-11 43.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|336477728|ref|YP_004616869.1| - 0.019 15.5 0.0 0.049 14.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Asn_synthase PF00733.16 gi|336477729|ref|YP_004616870.1| - 3.5e-12 46.3 0.0 6.6e-12 45.4 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|336477729|ref|YP_004616870.1| - 3.4e-09 35.9 0.0 5.2e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|336477729|ref|YP_004616870.1| - 1.6e-07 30.2 0.4 5.3e-05 21.9 0.2 2.5 2 1 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|336477729|ref|YP_004616870.1| - 4.6e-07 29.3 0.0 1.8e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|336477729|ref|YP_004616870.1| - 0.00017 21.1 0.1 0.00027 20.4 0.1 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|336477729|ref|YP_004616870.1| - 0.0017 17.8 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.14 gi|336477729|ref|YP_004616870.1| - 0.011 14.8 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|336477729|ref|YP_004616870.1| - 0.02 14.7 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family DUF1679 PF07914.6 gi|336477729|ref|YP_004616870.1| - 0.049 12.2 0.0 0.073 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Acetyltransf_7 PF13508.1 gi|336477730|ref|YP_004616871.1| - 1.3e-11 44.4 0.0 1.8e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336477730|ref|YP_004616871.1| - 1.1e-09 38.2 0.0 1.6e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336477730|ref|YP_004616871.1| - 1.2e-07 31.8 0.0 1.6e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336477730|ref|YP_004616871.1| - 8.6e-06 25.6 0.2 4.1e-05 23.4 0.2 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336477730|ref|YP_004616871.1| - 0.00093 18.9 0.0 0.0022 17.6 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|336477730|ref|YP_004616871.1| - 0.018 14.8 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF531 PF04407.7 gi|336477731|ref|YP_004616872.1| - 1.2e-81 272.6 0.0 1.4e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.1 gi|336477731|ref|YP_004616872.1| - 0.00011 21.4 0.0 0.00015 20.9 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP TrmB PF01978.14 gi|336477732|ref|YP_004616873.1| - 3.2e-21 74.7 0.0 5.2e-21 74.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|336477732|ref|YP_004616873.1| - 0.00047 19.9 0.1 0.0034 17.1 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|336477732|ref|YP_004616873.1| - 0.0019 18.3 0.0 0.0032 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|336477732|ref|YP_004616873.1| - 0.0027 17.1 0.0 0.0083 15.6 0.0 1.7 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|336477732|ref|YP_004616873.1| - 0.0038 17.5 0.0 0.018 15.3 0.0 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336477732|ref|YP_004616873.1| - 0.011 15.7 0.0 0.032 14.3 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|336477732|ref|YP_004616873.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.5 gi|336477732|ref|YP_004616873.1| - 0.024 14.2 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|336477732|ref|YP_004616873.1| - 0.025 14.5 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336477732|ref|YP_004616873.1| - 0.035 13.4 0.0 0.062 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding S10_plectin PF03501.10 gi|336477732|ref|YP_004616873.1| - 0.037 13.8 0.0 0.071 12.9 0.0 1.5 1 0 0 1 1 1 0 Plectin/S10 domain Fe_dep_repress PF01325.14 gi|336477732|ref|YP_004616873.1| - 0.062 13.2 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.9 gi|336477732|ref|YP_004616873.1| - 0.066 12.9 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|336477732|ref|YP_004616873.1| - 0.08 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family FUR PF01475.14 gi|336477732|ref|YP_004616873.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family dTMP_synthase PF02593.9 gi|336477733|ref|YP_004616874.1| - 3.9e-73 245.3 0.1 4.5e-73 245.2 0.1 1.0 1 0 0 1 1 1 1 Thymidylate synthase tRNA-synt_2d PF01409.15 gi|336477734|ref|YP_004616875.1| - 1.4e-93 312.6 0.0 1.9e-93 312.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|336477734|ref|YP_004616875.1| - 0.00019 20.3 0.3 0.078 11.7 0.0 3.5 4 0 0 4 4 4 1 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|336477734|ref|YP_004616875.1| - 0.00066 19.4 1.2 0.23 11.2 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix TrmB PF01978.14 gi|336477734|ref|YP_004616875.1| - 0.0075 15.9 0.2 0.11 12.2 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.6 gi|336477734|ref|YP_004616875.1| - 0.023 14.7 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 Rio2, N-terminal tRNA-synt_2b PF00587.20 gi|336477734|ref|YP_004616875.1| - 0.027 14.0 0.1 0.065 12.8 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) S10_plectin PF03501.10 gi|336477734|ref|YP_004616875.1| - 0.079 12.8 0.0 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Plectin/S10 domain tRNA-synt_1b PF00579.20 gi|336477735|ref|YP_004616876.1| - 2.9e-39 134.9 0.0 4.9e-21 75.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Radical_SAM PF04055.16 gi|336477736|ref|YP_004616877.1| - 6e-14 52.5 0.2 9.8e-14 51.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|336477736|ref|YP_004616877.1| - 9.6e-10 38.6 0.1 3.2e-09 36.9 0.1 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|336477736|ref|YP_004616877.1| - 0.0011 18.9 0.1 0.0024 17.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336477736|ref|YP_004616877.1| - 0.0051 16.9 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain KaiC PF06745.8 gi|336477737|ref|YP_004616878.1| - 6.5e-67 224.9 0.1 7.6e-67 224.7 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|336477737|ref|YP_004616878.1| - 5.2e-10 38.2 0.0 7.3e-10 37.7 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|336477737|ref|YP_004616878.1| - 1.5e-08 34.3 0.0 2e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|336477737|ref|YP_004616878.1| - 6.6e-06 25.1 0.0 1.2e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|336477737|ref|YP_004616878.1| - 4.9e-05 23.4 0.3 0.00043 20.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336477737|ref|YP_004616878.1| - 0.0012 19.6 0.8 0.0023 18.7 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336477737|ref|YP_004616878.1| - 0.003 17.4 0.1 0.08 12.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|336477737|ref|YP_004616878.1| - 0.014 14.3 0.1 0.029 13.3 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|336477737|ref|YP_004616878.1| - 0.03 13.7 0.0 0.04 13.3 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|336477737|ref|YP_004616878.1| - 0.035 13.9 0.0 0.064 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|336477737|ref|YP_004616878.1| - 0.049 13.9 1.5 0.18 12.0 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336477737|ref|YP_004616878.1| - 0.053 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|336477737|ref|YP_004616878.1| - 0.062 13.0 0.1 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 NTPase Viral_helicase1 PF01443.13 gi|336477737|ref|YP_004616878.1| - 0.14 11.6 0.1 0.4 10.1 0.0 1.8 1 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|336477737|ref|YP_004616878.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain eIF-5_eIF-2B PF01873.12 gi|336477738|ref|YP_004616879.1| - 1.4e-38 131.4 0.0 2.1e-38 130.7 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|336477738|ref|YP_004616879.1| - 5.7e-12 45.2 1.4 1.1e-11 44.2 1.0 1.5 1 0 0 1 1 1 1 TRAM domain AsnC_trans_reg PF01037.16 gi|336477738|ref|YP_004616879.1| - 0.029 14.0 0.0 0.79 9.4 0.0 2.4 2 0 0 2 2 2 0 AsnC family ZF-HD_dimer PF04770.7 gi|336477738|ref|YP_004616879.1| - 0.048 13.7 0.2 0.08 13.0 0.1 1.4 1 0 0 1 1 1 0 ZF-HD protein dimerisation region zf-ribbon_3 PF13248.1 gi|336477738|ref|YP_004616879.1| - 0.061 12.5 0.5 11 5.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336477738|ref|YP_004616879.1| - 0.14 12.0 1.0 0.24 11.3 0.7 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|336477738|ref|YP_004616879.1| - 0.17 11.3 0.4 3.5 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|336477738|ref|YP_004616879.1| - 0.2 11.5 1.8 0.41 10.5 1.1 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-RanBP PF00641.13 gi|336477738|ref|YP_004616879.1| - 0.27 10.3 0.1 0.27 10.3 0.1 1.8 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.13 gi|336477739|ref|YP_004616880.1| - 9.8e-34 115.9 0.5 1.1e-33 115.7 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1786 PF08735.5 gi|336477740|ref|YP_004616881.1| - 5e-85 284.7 0.0 6.4e-85 284.3 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) FtsA PF14450.1 gi|336477740|ref|YP_004616881.1| - 0.059 13.2 0.3 2.8 7.8 0.0 3.2 4 0 0 4 4 4 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|336477740|ref|YP_004616881.1| - 0.17 10.9 0.6 1.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase MoCF_biosynth PF00994.19 gi|336477741|ref|YP_004616882.1| - 5e-33 113.5 0.1 5.9e-33 113.2 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain KaiC PF06745.8 gi|336477742|ref|YP_004616883.1| - 4.3e-08 32.5 0.5 1.1e-07 31.2 0.3 1.6 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|336477742|ref|YP_004616883.1| - 2.1e-05 23.5 0.1 4.1e-05 22.5 0.0 1.5 2 0 0 2 2 2 1 PAXNEB protein CRS1_YhbY PF01985.16 gi|336477743|ref|YP_004616884.1| - 2.6e-22 78.6 1.7 2.9e-22 78.4 1.2 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain IF-2 PF11987.3 gi|336477743|ref|YP_004616884.1| - 0.0055 16.5 0.5 0.0062 16.3 0.4 1.2 1 0 0 1 1 1 1 Translation-initiation factor 2 DUF3670 PF12419.3 gi|336477743|ref|YP_004616884.1| - 0.077 12.4 0.0 0.077 12.4 0.0 1.1 1 0 0 1 1 1 0 SNF2 Helicase protein DUF190 PF02641.10 gi|336477744|ref|YP_004616885.1| - 1.9e-25 88.6 0.1 2.1e-25 88.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.10 gi|336477745|ref|YP_004616886.1| - 7.3e-23 80.6 10.2 8.5e-23 80.4 7.1 1.1 1 0 0 1 1 1 1 CrcB-like protein CRCB PF02537.10 gi|336477746|ref|YP_004616887.1| - 1.3e-21 76.6 14.1 1.6e-21 76.4 9.8 1.1 1 0 0 1 1 1 1 CrcB-like protein Lysis_S PF04971.7 gi|336477746|ref|YP_004616887.1| - 0.13 11.9 3.0 0.17 11.5 0.2 2.2 1 1 1 2 2 2 0 Lysis protein S DUF4190 PF13828.1 gi|336477746|ref|YP_004616887.1| - 1.7 8.2 9.1 0.11 12.0 2.2 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) MoeA_N PF03453.12 gi|336477747|ref|YP_004616888.1| - 1.1e-43 148.4 0.1 3.5e-43 146.7 0.0 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|336477747|ref|YP_004616888.1| - 9.9e-28 96.3 0.0 1.5e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|336477747|ref|YP_004616888.1| - 7.5e-15 54.6 0.3 3.3e-14 52.5 0.1 2.2 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) MutL PF13941.1 gi|336477747|ref|YP_004616888.1| - 0.015 13.6 0.1 0.021 13.1 0.1 1.2 1 0 0 1 1 1 0 MutL protein PUA PF01472.15 gi|336477747|ref|YP_004616888.1| - 0.066 12.9 0.2 10 5.9 0.0 2.9 3 0 0 3 3 3 0 PUA domain ThiS PF02597.15 gi|336477748|ref|YP_004616889.1| - 2.8e-18 66.1 0.1 3.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|336477748|ref|YP_004616889.1| - 0.01 15.9 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) DUF4150 PF13665.1 gi|336477748|ref|YP_004616889.1| - 0.029 14.2 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) FHA PF00498.21 gi|336477748|ref|YP_004616889.1| - 0.061 13.4 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 FHA domain ABC2_membrane PF01061.19 gi|336477749|ref|YP_004616890.1| - 5.5e-39 133.5 19.8 5.5e-39 133.5 13.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336477749|ref|YP_004616890.1| - 2.8e-13 49.6 28.8 2.8e-13 49.6 19.9 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336477749|ref|YP_004616890.1| - 6.7e-07 28.7 29.9 1.2e-06 27.9 20.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4386 PF14329.1 gi|336477749|ref|YP_004616890.1| - 8.6 5.7 21.8 0.028 13.8 5.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4386) Flavoprotein PF02441.14 gi|336477750|ref|YP_004616891.1| - 1.6e-30 105.3 0.3 2.1e-30 105.0 0.2 1.1 1 0 0 1 1 1 1 Flavoprotein Phage_head_chap PF11113.3 gi|336477751|ref|YP_004616892.1| - 0.019 14.8 1.6 0.021 14.7 0.2 1.8 3 0 0 3 3 3 0 Head assembly gene product HD PF01966.17 gi|336477752|ref|YP_004616893.1| - 3.1e-12 46.5 3.9 5e-12 45.8 1.2 2.4 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|336477752|ref|YP_004616893.1| - 0.003 16.8 0.0 0.01 15.0 0.0 1.8 1 1 1 2 2 2 1 HDOD domain DUF2482 PF10655.4 gi|336477752|ref|YP_004616893.1| - 0.014 15.4 0.1 0.042 13.8 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) UPF0052 PF01933.13 gi|336477753|ref|YP_004616894.1| - 5.3e-53 180.3 0.7 1.2e-52 179.1 0.5 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF2525 PF10733.4 gi|336477753|ref|YP_004616894.1| - 0.036 13.9 0.0 10 6.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2525) Pribosyltran PF00156.22 gi|336477754|ref|YP_004616895.1| - 8.6e-20 70.7 0.8 1.3e-19 70.1 0.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336477754|ref|YP_004616895.1| - 0.0002 20.6 0.1 0.00028 20.1 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336477754|ref|YP_004616895.1| - 0.0038 16.5 0.1 0.005 16.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF2529 PF10740.4 gi|336477754|ref|YP_004616895.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2529) Diphthamide_syn PF01866.12 gi|336477755|ref|YP_004616896.1| - 9.6e-100 333.7 0.0 1.1e-99 333.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein ATPgrasp_TupA PF14305.1 gi|336477755|ref|YP_004616896.1| - 0.028 13.7 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 TupA-like ATPgrasp MTS PF05175.9 gi|336477756|ref|YP_004616897.1| - 2e-16 59.8 0.0 2.8e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|336477756|ref|YP_004616897.1| - 7.1e-14 51.6 0.1 9.6e-14 51.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|336477756|ref|YP_004616897.1| - 2.8e-12 46.6 0.0 3.5e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336477756|ref|YP_004616897.1| - 3.7e-11 42.8 0.3 5.5e-11 42.2 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477756|ref|YP_004616897.1| - 1.9e-10 41.3 0.0 2.4e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336477756|ref|YP_004616897.1| - 7.4e-08 32.1 0.0 1.2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|336477756|ref|YP_004616897.1| - 4e-06 27.1 0.0 8.5e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336477756|ref|YP_004616897.1| - 4e-05 24.0 0.1 0.00011 22.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain DUF43 PF01861.11 gi|336477756|ref|YP_004616897.1| - 5.7e-05 22.2 0.0 7.6e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_23 PF13489.1 gi|336477756|ref|YP_004616897.1| - 7e-05 22.6 0.0 9.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336477756|ref|YP_004616897.1| - 0.00091 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TehB PF03848.9 gi|336477756|ref|YP_004616897.1| - 0.0011 18.1 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB N6_Mtase PF02384.11 gi|336477756|ref|YP_004616897.1| - 0.0024 17.0 0.0 0.0053 15.8 0.0 1.5 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.7 gi|336477756|ref|YP_004616897.1| - 0.0032 17.9 0.1 0.0059 17.0 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|336477756|ref|YP_004616897.1| - 0.0096 14.9 0.1 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_15 PF09445.5 gi|336477756|ref|YP_004616897.1| - 0.011 15.3 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|336477756|ref|YP_004616897.1| - 0.016 14.8 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336477756|ref|YP_004616897.1| - 0.059 12.4 0.0 0.091 11.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family ECR1_N PF14382.1 gi|336477757|ref|YP_004616898.1| - 2.7e-10 39.3 0.1 5.6e-10 38.3 0.1 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|336477757|ref|YP_004616898.1| - 0.00052 20.0 9.1 0.004 17.2 4.2 2.7 2 1 0 2 2 2 1 S1 RNA binding domain EXOSC1 PF10447.4 gi|336477757|ref|YP_004616898.1| - 0.0013 18.6 2.4 0.0044 16.9 1.7 1.9 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 Prok-RING_1 PF14446.1 gi|336477757|ref|YP_004616898.1| - 0.002 17.8 0.6 0.0038 16.9 0.4 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|336477757|ref|YP_004616898.1| - 0.011 15.4 0.2 0.019 14.6 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|336477757|ref|YP_004616898.1| - 0.037 13.5 0.1 0.055 12.9 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.6 gi|336477757|ref|YP_004616898.1| - 0.037 13.6 1.6 0.075 12.6 1.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|336477757|ref|YP_004616898.1| - 0.084 12.7 0.5 0.14 11.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|336477757|ref|YP_004616898.1| - 0.31 10.8 2.2 0.53 10.1 1.5 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|336477757|ref|YP_004616898.1| - 0.42 9.8 2.4 1.3 8.3 1.7 1.7 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336477757|ref|YP_004616898.1| - 1.8 8.6 4.1 5.7 6.9 2.8 1.9 1 1 0 1 1 1 0 Zinc ribbon domain RNA_pol_L_2 PF13656.1 gi|336477758|ref|YP_004616899.1| - 1.1e-22 79.2 0.2 1.3e-22 78.9 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|336477758|ref|YP_004616899.1| - 1.7e-08 33.4 0.0 2.3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SLA_LP_auto_ag PF05889.8 gi|336477759|ref|YP_004616900.1| - 9.2e-52 175.8 0.0 1.2e-51 175.4 0.0 1.1 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|336477759|ref|YP_004616900.1| - 6.1e-15 54.8 0.0 8.8e-15 54.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|336477759|ref|YP_004616900.1| - 2.5e-10 39.8 0.0 3.3e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|336477759|ref|YP_004616900.1| - 0.08 11.3 0.0 0.17 10.3 0.0 1.5 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain E1-E2_ATPase PF00122.15 gi|336477760|ref|YP_004616901.1| - 1.2e-68 230.5 12.9 9.1e-67 224.4 2.6 2.7 2 0 0 2 2 2 2 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|336477760|ref|YP_004616901.1| - 2.3e-46 157.6 1.0 2.3e-46 157.6 0.7 2.9 3 1 1 4 4 4 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|336477760|ref|YP_004616901.1| - 3.7e-34 119.0 0.3 7.3e-34 118.0 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|336477760|ref|YP_004616901.1| - 7.5e-20 70.6 0.0 1.6e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|336477760|ref|YP_004616901.1| - 1.2e-18 66.3 0.3 8.3e-18 63.6 0.0 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|336477760|ref|YP_004616901.1| - 7.3e-17 62.1 0.1 2.1e-16 60.6 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336477760|ref|YP_004616901.1| - 5.8e-11 42.4 1.7 2.3e-07 30.6 1.1 2.6 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase SPC12 PF06645.8 gi|336477760|ref|YP_004616901.1| - 3.8 7.3 9.5 0.87 9.4 3.1 2.5 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Ammonium_transp PF00909.16 gi|336477761|ref|YP_004616902.1| - 2.6e-116 388.4 39.4 3.1e-116 388.1 27.3 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF373 PF04123.8 gi|336477761|ref|YP_004616902.1| - 1.8 7.5 29.3 0.93 8.4 3.9 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF373) P-II PF00543.17 gi|336477762|ref|YP_004616903.1| - 4.6e-39 133.0 1.4 5.1e-39 132.8 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II LUC7 PF03194.10 gi|336477763|ref|YP_004616904.1| - 0.0012 18.4 2.6 0.0012 18.4 1.8 1.6 2 1 0 2 2 2 1 LUC7 N_terminus GreA_GreB_N PF03449.10 gi|336477763|ref|YP_004616904.1| - 0.026 14.5 1.4 2.9 8.0 0.1 3.0 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal DUF3887 PF13026.1 gi|336477763|ref|YP_004616904.1| - 0.12 12.7 3.8 0.41 10.9 2.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3887) tRNA-synt_1b PF00579.20 gi|336477764|ref|YP_004616905.1| - 2.1e-58 197.8 0.0 2.5e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|336477764|ref|YP_004616905.1| - 0.13 10.9 0.0 2.8 6.5 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) Aldolase_2 PF10120.4 gi|336477765|ref|YP_004616906.1| - 1.9e-49 167.3 0.0 2.1e-49 167.1 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase AIRS_C PF02769.17 gi|336477766|ref|YP_004616907.1| - 7.6e-25 87.7 0.9 1e-24 87.2 0.6 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336477766|ref|YP_004616907.1| - 3e-11 43.4 1.8 8.1e-11 42.0 0.0 2.5 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain SAICAR_synt PF01259.13 gi|336477767|ref|YP_004616908.1| - 2e-56 190.9 2.2 2.2e-56 190.7 1.5 1.0 1 0 0 1 1 1 1 SAICAR synthetase NAD_binding_8 PF13450.1 gi|336477768|ref|YP_004616909.1| - 3.2e-17 62.2 0.0 6.6e-17 61.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336477768|ref|YP_004616909.1| - 7e-13 48.1 0.5 2.7e-08 33.1 0.2 2.8 3 0 0 3 3 3 2 FAD binding domain Amino_oxidase PF01593.19 gi|336477768|ref|YP_004616909.1| - 7.7e-12 45.0 0.0 1.8e-10 40.5 0.0 2.6 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|336477768|ref|YP_004616909.1| - 2e-09 36.8 0.4 3.7e-08 32.6 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336477768|ref|YP_004616909.1| - 1.4e-08 33.6 0.2 2.9e-07 29.3 0.1 2.4 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|336477768|ref|YP_004616909.1| - 3.6e-08 32.7 0.4 7e-08 31.8 0.2 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|336477768|ref|YP_004616909.1| - 4.9e-06 25.8 0.1 1.9e-05 23.9 0.0 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336477768|ref|YP_004616909.1| - 1.7e-05 24.0 0.4 3e-05 23.2 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|336477768|ref|YP_004616909.1| - 3e-05 23.9 0.0 0.00043 20.2 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336477768|ref|YP_004616909.1| - 9.1e-05 22.7 2.2 0.00094 19.5 0.2 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336477768|ref|YP_004616909.1| - 0.00028 19.8 1.9 0.001 18.0 0.4 2.4 2 1 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|336477768|ref|YP_004616909.1| - 0.00072 18.5 0.3 0.0033 16.4 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|336477768|ref|YP_004616909.1| - 0.0011 19.0 0.0 0.0031 17.5 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|336477768|ref|YP_004616909.1| - 0.0019 16.6 2.2 0.0025 16.1 0.4 2.0 3 0 0 3 3 3 1 GDP dissociation inhibitor GMC_oxred_N PF00732.14 gi|336477768|ref|YP_004616909.1| - 0.0037 16.4 0.1 0.22 10.6 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase ApbA PF02558.11 gi|336477768|ref|YP_004616909.1| - 0.14 11.5 0.2 0.25 10.7 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF650 PF04894.7 gi|336477769|ref|YP_004616910.1| - 2.8e-99 332.0 0.0 3.4e-99 331.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|336477769|ref|YP_004616910.1| - 7.4e-37 125.3 0.0 1.1e-36 124.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) HTH_3 PF01381.17 gi|336477770|ref|YP_004616911.1| - 0.00017 21.3 0.1 0.0005 19.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|336477770|ref|YP_004616911.1| - 0.00052 19.2 0.1 0.0043 16.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|336477770|ref|YP_004616911.1| - 0.0015 18.3 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|336477770|ref|YP_004616911.1| - 0.0037 16.6 0.4 0.013 14.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|336477770|ref|YP_004616911.1| - 0.004 16.7 0.1 0.0089 15.6 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_8 PF02954.14 gi|336477770|ref|YP_004616911.1| - 0.0068 15.9 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_19 PF12844.2 gi|336477770|ref|YP_004616911.1| - 0.021 14.8 0.1 0.062 13.3 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|336477770|ref|YP_004616911.1| - 0.024 14.2 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein HTH_17 PF12728.2 gi|336477770|ref|YP_004616911.1| - 0.042 14.1 0.0 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|336477770|ref|YP_004616911.1| - 0.06 13.1 0.1 0.14 11.9 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336477770|ref|YP_004616911.1| - 0.1 12.0 0.3 0.38 10.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 P22_Cro PF14549.1 gi|336477770|ref|YP_004616911.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro NifU_N PF01592.11 gi|336477771|ref|YP_004616912.1| - 2.2e-53 179.5 0.3 2.4e-53 179.4 0.2 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Aminotran_5 PF00266.14 gi|336477772|ref|YP_004616913.1| - 2.8e-96 322.4 0.0 3.2e-96 322.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|336477772|ref|YP_004616913.1| - 6.8e-09 35.2 0.0 9.1e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|336477772|ref|YP_004616913.1| - 6.9e-07 28.6 0.0 1.1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|336477772|ref|YP_004616913.1| - 0.012 13.9 0.0 0.018 13.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|336477772|ref|YP_004616913.1| - 0.012 14.0 0.0 0.019 13.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Transketolase_C PF02780.15 gi|336477772|ref|YP_004616913.1| - 0.066 13.1 0.1 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 Transketolase, C-terminal domain SUI1 PF01253.17 gi|336477773|ref|YP_004616914.1| - 2.1e-24 85.1 0.3 2.6e-24 84.8 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DUF192 PF02643.10 gi|336477774|ref|YP_004616915.1| - 1.3e-23 82.6 0.0 1.5e-23 82.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS_C PF02769.17 gi|336477775|ref|YP_004616916.1| - 2e-48 164.2 1.2 8.6e-28 97.2 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336477775|ref|YP_004616916.1| - 5.7e-41 138.6 3.7 2.3e-24 85.4 0.1 3.5 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain Dpoe2NT PF12213.3 gi|336477775|ref|YP_004616916.1| - 0.1 12.5 0.2 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal TRAM PF01938.15 gi|336477776|ref|YP_004616917.1| - 9.2e-17 60.5 2.0 9.9e-17 60.4 1.4 1.0 1 0 0 1 1 1 1 TRAM domain Pribosyltran PF00156.22 gi|336477777|ref|YP_004616918.1| - 3.2e-28 97.9 0.3 4.5e-28 97.4 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336477777|ref|YP_004616918.1| - 0.0002 20.6 0.0 0.00035 19.8 0.0 1.4 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336477777|ref|YP_004616918.1| - 0.00089 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Unstab_antitox PF09720.5 gi|336477777|ref|YP_004616918.1| - 0.0068 16.0 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 Putative addiction module component Cupin_2 PF07883.6 gi|336477778|ref|YP_004616919.1| - 5e-12 45.1 0.0 6.4e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|336477778|ref|YP_004616919.1| - 9e-06 25.4 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.7 gi|336477778|ref|YP_004616919.1| - 0.0017 18.2 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase DUF4437 PF14499.1 gi|336477778|ref|YP_004616919.1| - 0.002 17.1 0.0 0.0023 16.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4437) Cupin_7 PF12973.2 gi|336477778|ref|YP_004616919.1| - 0.0023 17.7 0.0 0.0029 17.4 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.17 gi|336477778|ref|YP_004616919.1| - 0.0059 16.0 0.0 0.0087 15.4 0.0 1.4 1 1 0 1 1 1 1 Cupin ARD PF03079.9 gi|336477778|ref|YP_004616919.1| - 0.029 14.3 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_6 PF12852.2 gi|336477778|ref|YP_004616919.1| - 0.09 12.3 0.0 0.095 12.3 0.0 1.1 1 0 0 1 1 1 0 Cupin Cupin_4 PF08007.7 gi|336477778|ref|YP_004616919.1| - 0.15 11.2 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Cupin superfamily protein F_bP_aldolase PF01116.15 gi|336477779|ref|YP_004616920.1| - 4.9e-24 84.9 0.0 6.1e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.6 gi|336477779|ref|YP_004616920.1| - 2.4e-09 36.1 0.0 3.3e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase Peptidase_S49 PF01343.13 gi|336477780|ref|YP_004616921.1| - 2.6e-42 144.2 0.0 3.6e-42 143.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|336477780|ref|YP_004616921.1| - 2.4e-06 27.3 2.4 7.5e-05 22.4 0.5 2.2 2 0 0 2 2 2 2 Clp protease Asparaginase PF00710.15 gi|336477780|ref|YP_004616921.1| - 0.06 12.2 0.1 0.1 11.4 0.1 1.3 1 0 0 1 1 1 0 Asparaginase tRNA-synt_1g PF09334.6 gi|336477781|ref|YP_004616922.1| - 2.2e-144 480.9 0.1 7.3e-144 479.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|336477781|ref|YP_004616922.1| - 7.1e-26 89.8 0.6 1.5e-25 88.8 0.2 1.8 2 0 0 2 2 2 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|336477781|ref|YP_004616922.1| - 1e-18 66.7 0.2 2.2e-09 35.9 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|336477781|ref|YP_004616922.1| - 1.6e-13 50.6 1.2 3e-13 49.7 0.9 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|336477781|ref|YP_004616922.1| - 3e-13 49.5 0.2 9.9e-09 34.7 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|336477781|ref|YP_004616922.1| - 0.00011 21.0 0.1 0.1 11.2 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (K) DZR PF12773.2 gi|336477781|ref|YP_004616922.1| - 0.013 15.3 7.2 0.087 12.6 5.0 2.2 1 1 0 1 1 1 0 Double zinc ribbon UPF0052 PF01933.13 gi|336477781|ref|YP_004616922.1| - 0.055 12.7 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 zinc_ribbon_2 PF13240.1 gi|336477781|ref|YP_004616922.1| - 0.11 12.0 12.6 0.21 11.0 3.1 3.0 2 1 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|336477781|ref|YP_004616922.1| - 0.23 11.4 4.5 0.89 9.5 3.1 1.9 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|336477781|ref|YP_004616922.1| - 0.35 10.6 7.9 0.036 13.7 1.6 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF164 PF02591.10 gi|336477781|ref|YP_004616922.1| - 0.68 9.8 3.4 0.77 9.6 0.1 2.5 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-HIT PF04438.11 gi|336477781|ref|YP_004616922.1| - 1.6 8.4 4.1 2.4 7.8 0.0 2.7 2 1 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.1 gi|336477781|ref|YP_004616922.1| - 2.7 7.3 14.0 0.084 12.1 2.9 2.9 3 1 0 3 3 3 0 zinc-ribbon domain CYTH PF01928.16 gi|336477782|ref|YP_004616923.1| - 9.5e-39 132.9 0.1 1.1e-38 132.8 0.1 1.0 1 0 0 1 1 1 1 CYTH domain DUF4463 PF14703.1 gi|336477782|ref|YP_004616923.1| - 0.049 14.1 1.0 0.38 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4463) DUF35 PF01796.12 gi|336477783|ref|YP_004616924.1| - 3.5e-18 65.5 0.0 4.9e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|336477783|ref|YP_004616924.1| - 4.7e-09 35.8 0.3 7e-09 35.3 0.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|336477783|ref|YP_004616924.1| - 0.041 13.5 1.4 0.075 12.7 1.0 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FdhE PF04216.7 gi|336477783|ref|YP_004616924.1| - 0.1 12.2 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DZR PF12773.2 gi|336477783|ref|YP_004616924.1| - 0.14 12.0 2.0 0.28 11.0 1.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Thiolase_C PF02803.13 gi|336477784|ref|YP_004616925.1| - 3.9e-12 45.6 1.0 2.8e-11 42.9 0.7 2.3 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|336477784|ref|YP_004616925.1| - 2.4e-10 39.8 3.1 3.2e-10 39.4 0.7 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|336477784|ref|YP_004616925.1| - 8.4e-06 25.4 5.7 5.5e-05 22.7 4.0 2.2 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|336477784|ref|YP_004616925.1| - 0.0055 16.5 1.8 0.056 13.2 0.0 2.8 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III_C PF08541.5 gi|336477785|ref|YP_004616926.1| - 1e-09 38.2 0.0 2.6e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|336477785|ref|YP_004616926.1| - 1.7e-06 27.7 0.0 2.4e-05 23.9 0.0 2.0 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|336477785|ref|YP_004616926.1| - 2.8e-05 23.7 0.1 4.1e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|336477785|ref|YP_004616926.1| - 0.011 14.7 0.5 0.017 14.1 0.4 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|336477785|ref|YP_004616926.1| - 0.014 15.0 2.8 0.014 15.0 2.0 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.17 gi|336477786|ref|YP_004616927.1| - 1.7e-08 34.1 0.0 5.5e-08 32.5 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|336477786|ref|YP_004616927.1| - 4.3e-07 29.8 0.6 1.4e-06 28.2 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|336477786|ref|YP_004616927.1| - 0.0055 16.8 0.0 0.014 15.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Cas_Cas4 PF01930.12 gi|336477787|ref|YP_004616928.1| - 1.7e-09 37.7 0.8 1.9e-06 27.8 0.0 2.5 3 0 0 3 3 3 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|336477787|ref|YP_004616928.1| - 0.00032 20.1 0.7 0.028 13.7 0.5 2.1 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1284 PF06935.6 gi|336477787|ref|YP_004616928.1| - 0.1 12.8 2.5 0.23 11.6 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1284) PAPS_reduct PF01507.14 gi|336477788|ref|YP_004616929.1| - 7.4e-46 156.1 0.0 1.4e-45 155.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|336477788|ref|YP_004616929.1| - 2.6e-23 81.5 0.2 7.3e-23 80.0 0.2 1.7 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.2 gi|336477788|ref|YP_004616929.1| - 2.2e-05 24.7 11.7 2.2e-05 24.7 8.1 2.7 4 0 0 4 4 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477788|ref|YP_004616929.1| - 7.2e-05 22.5 10.1 7.2e-05 22.5 7.0 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336477788|ref|YP_004616929.1| - 0.00047 20.3 12.9 0.00047 20.3 8.9 2.7 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336477788|ref|YP_004616929.1| - 0.00071 19.0 24.5 0.0042 16.6 2.5 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336477788|ref|YP_004616929.1| - 0.0036 17.1 2.6 0.0036 17.1 1.8 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477788|ref|YP_004616929.1| - 0.007 16.1 11.4 0.007 16.1 7.9 2.9 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336477788|ref|YP_004616929.1| - 0.025 14.8 2.2 0.025 14.8 1.5 4.2 4 1 0 4 4 2 0 4Fe-4S binding domain Asn_synthase PF00733.16 gi|336477788|ref|YP_004616929.1| - 0.037 13.5 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase Fer4_2 PF12797.2 gi|336477788|ref|YP_004616929.1| - 0.14 12.0 17.9 0.066 13.1 2.2 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336477788|ref|YP_004616929.1| - 0.23 11.9 14.7 1.2 9.6 3.0 3.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336477788|ref|YP_004616929.1| - 1.3 9.4 17.8 0.66 10.3 1.1 3.7 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477788|ref|YP_004616929.1| - 4.1 8.2 26.2 0.12 13.1 1.8 4.0 5 0 0 5 5 3 0 4Fe-4S double cluster binding domain AICARFT_IMPCHas PF01808.13 gi|336477789|ref|YP_004616930.1| - 1.6e-88 296.8 0.0 2.1e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|336477789|ref|YP_004616930.1| - 2.3e-26 91.5 0.1 4.7e-26 90.5 0.1 1.5 1 0 0 1 1 1 1 MGS-like domain NSP2_assoc PF14758.1 gi|336477789|ref|YP_004616930.1| - 0.11 12.5 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Non-essential region of nsp2 of arterivirus polyprotein iPGM_N PF06415.8 gi|336477790|ref|YP_004616931.1| - 2.1e-90 301.9 1.0 2.8e-90 301.5 0.7 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|336477790|ref|YP_004616931.1| - 4.8e-90 301.3 0.2 5.5e-90 301.1 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|336477790|ref|YP_004616931.1| - 8.5e-05 22.0 0.1 0.00028 20.3 0.0 1.9 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|336477790|ref|YP_004616931.1| - 0.0019 17.4 0.0 0.02 14.1 0.0 2.4 3 0 0 3 3 3 1 Sulfatase PglZ PF08665.7 gi|336477790|ref|YP_004616931.1| - 0.0036 16.9 0.7 0.0065 16.1 0.2 1.6 2 0 0 2 2 2 1 PglZ domain AP_endonuc_2 PF01261.19 gi|336477790|ref|YP_004616931.1| - 0.005 16.1 0.2 0.015 14.6 0.0 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel XPG_I PF00867.13 gi|336477791|ref|YP_004616932.1| - 7.2e-26 90.0 0.0 1.9e-25 88.7 0.0 1.7 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|336477791|ref|YP_004616932.1| - 4.6e-20 71.7 0.0 8.4e-20 70.9 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|336477791|ref|YP_004616932.1| - 0.00098 19.3 0.0 0.0019 18.4 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Imm39 PF15600.1 gi|336477792|ref|YP_004616933.1| - 0.09 12.6 1.0 0.11 12.3 0.7 1.0 1 0 0 1 1 1 0 Immunity protein 39 PrgI PF12666.2 gi|336477794|ref|YP_004616935.1| - 0.0083 16.2 0.1 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 PrgI family protein LXG PF04740.7 gi|336477794|ref|YP_004616935.1| - 0.032 14.0 0.3 0.043 13.6 0.2 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily NMN_transporter PF04973.7 gi|336477794|ref|YP_004616935.1| - 0.043 13.2 1.2 0.053 12.9 0.8 1.1 1 0 0 1 1 1 0 Nicotinamide mononucleotide transporter DUF2157 PF09925.4 gi|336477794|ref|YP_004616935.1| - 0.051 13.1 0.9 0.068 12.7 0.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF4446 PF14584.1 gi|336477794|ref|YP_004616935.1| - 0.12 12.2 2.5 0.084 12.7 0.6 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) TMEMspv1-c74-12 PF11044.3 gi|336477794|ref|YP_004616935.1| - 0.29 10.7 3.3 7.5 6.1 0.0 2.2 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein ApoO PF09769.4 gi|336477794|ref|YP_004616935.1| - 0.63 9.7 3.2 1.2 8.8 0.1 2.0 1 1 1 2 2 2 0 Apolipoprotein O DUF3671 PF12420.3 gi|336477794|ref|YP_004616935.1| - 9.4 6.2 6.1 6.1 6.8 2.0 2.1 1 1 2 3 3 3 0 Protein of unknown function DUF1119 PF06550.6 gi|336477795|ref|YP_004616936.1| - 1.4e-100 336.0 29.9 1.7e-100 335.8 20.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Presenilin PF01080.12 gi|336477795|ref|YP_004616936.1| - 0.046 12.5 0.2 0.046 12.5 0.2 2.5 2 1 0 2 2 2 0 Presenilin Gly-zipper_Omp PF13488.1 gi|336477795|ref|YP_004616936.1| - 0.67 9.6 0.1 0.67 9.6 0.1 3.3 3 0 0 3 3 3 0 Glycine zipper DUF3816 PF12822.2 gi|336477795|ref|YP_004616936.1| - 2.7 7.8 33.0 0.5 10.2 14.7 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) CMD PF02627.15 gi|336477796|ref|YP_004616937.1| - 2.4e-14 52.9 0.0 3.7e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.7 gi|336477797|ref|YP_004616938.1| - 1.9e-109 364.5 0.1 2.2e-109 364.3 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|336477798|ref|YP_004616939.1| - 5.3e-57 192.0 0.3 6.3e-57 191.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|336477799|ref|YP_004616940.1| - 3.8e-54 183.8 2.9 5e-54 183.4 2.0 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.11 gi|336477799|ref|YP_004616940.1| - 0.00062 19.4 0.1 0.0021 17.7 0.0 1.8 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydant_A_N PF05378.8 gi|336477799|ref|YP_004616940.1| - 0.0059 16.1 0.6 0.0059 16.1 0.4 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|336477799|ref|YP_004616940.1| - 0.025 14.4 3.6 0.25 11.1 2.5 2.5 1 1 0 1 1 1 0 Cell division protein FtsA FGGY_N PF00370.16 gi|336477799|ref|YP_004616940.1| - 0.11 11.7 2.4 1.6 7.9 0.3 2.5 2 1 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain DUF2112 PF09885.4 gi|336477800|ref|YP_004616941.1| - 6.4e-66 220.4 0.0 7.2e-66 220.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|336477801|ref|YP_004616942.1| - 2.1e-41 139.6 0.0 3e-41 139.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.16 gi|336477802|ref|YP_004616943.1| - 0.00013 22.2 0.9 2.9 8.0 0.0 4.2 3 2 0 3 3 3 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF871 PF05913.6 gi|336477802|ref|YP_004616943.1| - 0.0074 15.1 0.0 0.059 12.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF871) PASTA PF03793.14 gi|336477802|ref|YP_004616943.1| - 0.022 14.3 0.1 0.083 12.5 0.1 2.1 1 0 0 1 1 1 0 PASTA domain Fer2_4 PF13510.1 gi|336477802|ref|YP_004616943.1| - 0.028 14.2 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Alginate_lyase2 PF08787.6 gi|336477802|ref|YP_004616943.1| - 0.067 12.8 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Alginate lyase ABC_tran PF00005.22 gi|336477803|ref|YP_004616944.1| - 2e-51 173.8 0.1 2.9e-25 89.1 0.0 2.7 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|336477803|ref|YP_004616944.1| - 5e-07 29.9 1.3 0.15 12.0 0.0 4.0 4 0 0 4 4 4 2 AAA domain SMC_N PF02463.14 gi|336477803|ref|YP_004616944.1| - 7.5e-07 28.6 0.1 0.041 13.1 0.0 2.9 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336477803|ref|YP_004616944.1| - 2.9e-06 26.5 2.0 0.15 11.0 0.0 3.4 4 0 0 4 4 4 3 AAA ATPase domain DUF258 PF03193.11 gi|336477803|ref|YP_004616944.1| - 1.5e-05 24.2 0.4 0.089 11.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|336477803|ref|YP_004616944.1| - 6.7e-05 22.7 0.0 0.75 9.7 0.0 3.4 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|336477803|ref|YP_004616944.1| - 0.00011 21.8 1.1 0.38 10.4 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 PRK PF00485.13 gi|336477803|ref|YP_004616944.1| - 0.00076 19.0 0.1 1.1 8.8 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|336477803|ref|YP_004616944.1| - 0.00087 19.3 0.0 1.5 8.7 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|336477803|ref|YP_004616944.1| - 0.00094 20.0 0.3 0.22 12.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336477803|ref|YP_004616944.1| - 0.0012 19.1 1.9 0.2 11.9 0.1 3.1 3 0 0 3 3 3 1 AAA domain ATP-synt_ab PF00006.20 gi|336477803|ref|YP_004616944.1| - 0.0013 18.3 0.1 0.27 10.6 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|336477803|ref|YP_004616944.1| - 0.0018 17.7 1.1 1.2 8.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|336477803|ref|YP_004616944.1| - 0.0095 15.3 0.1 5.2 6.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336477803|ref|YP_004616944.1| - 0.013 14.6 0.5 0.17 10.9 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_10 PF12846.2 gi|336477803|ref|YP_004616944.1| - 0.014 14.8 2.3 4.7 6.5 0.0 3.2 4 0 0 4 4 4 0 AAA-like domain AAA_30 PF13604.1 gi|336477803|ref|YP_004616944.1| - 0.023 14.3 0.2 5.5 6.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|336477803|ref|YP_004616944.1| - 0.023 14.8 4.5 3.9 7.6 0.0 3.5 2 2 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|336477803|ref|YP_004616944.1| - 0.041 13.0 1.4 3.7 6.6 0.1 2.7 2 0 0 2 2 2 0 KaiC ArgK PF03308.11 gi|336477803|ref|YP_004616944.1| - 0.042 12.6 1.2 2.9 6.5 0.1 2.4 2 0 0 2 2 2 0 ArgK protein IstB_IS21 PF01695.12 gi|336477803|ref|YP_004616944.1| - 0.072 12.4 1.7 7.8 5.8 0.0 3.2 4 0 0 4 4 4 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|336477803|ref|YP_004616944.1| - 0.075 11.8 2.4 1.3 7.8 0.1 2.5 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.12 gi|336477803|ref|YP_004616944.1| - 0.14 11.9 4.6 2.2 8.0 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|336477803|ref|YP_004616944.1| - 0.19 11.7 0.9 9.4 6.1 0.1 3.3 4 0 0 4 4 4 0 AAA domain MobB PF03205.9 gi|336477803|ref|YP_004616944.1| - 0.22 11.2 2.9 2.9 7.5 0.2 2.7 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|336477803|ref|YP_004616944.1| - 1.2 9.3 4.2 5.7 7.2 0.7 2.4 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|336477803|ref|YP_004616944.1| - 2.9 6.2 6.6 1.3 7.3 0.0 2.9 4 0 0 4 4 4 0 AAA domain AAA PF00004.24 gi|336477803|ref|YP_004616944.1| - 7.8 6.7 6.6 25 5.0 1.5 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Hydrolase PF00702.21 gi|336477804|ref|YP_004616945.1| - 4.6e-14 53.3 0.3 1.3e-13 51.9 0.2 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336477804|ref|YP_004616945.1| - 2.9e-12 47.1 0.1 4.5e-12 46.5 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336477804|ref|YP_004616945.1| - 2.3e-09 37.2 0.2 0.0007 19.2 0.0 2.5 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|336477804|ref|YP_004616945.1| - 5e-05 23.5 0.0 0.00013 22.2 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336477804|ref|YP_004616945.1| - 0.0026 17.4 0.1 0.0056 16.3 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_phosphat_B PF03767.9 gi|336477804|ref|YP_004616945.1| - 0.062 12.6 0.1 0.62 9.3 0.0 2.1 1 1 1 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Peptidase_M10 PF00413.19 gi|336477805|ref|YP_004616946.1| - 2.9e-16 59.5 0.0 6.9e-16 58.3 0.0 1.5 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|336477805|ref|YP_004616946.1| - 0.00029 21.3 0.0 0.00039 20.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|336477805|ref|YP_004616946.1| - 0.0019 18.2 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|336477805|ref|YP_004616946.1| - 0.0027 16.6 0.1 0.0042 16.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|336477805|ref|YP_004616946.1| - 0.0037 15.7 0.0 0.0051 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M57 PF12388.3 gi|336477805|ref|YP_004616946.1| - 0.013 14.8 0.0 0.017 14.4 0.0 1.1 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_5 PF13688.1 gi|336477805|ref|YP_004616946.1| - 0.022 14.6 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.1 gi|336477805|ref|YP_004616946.1| - 0.035 13.6 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M54 PF07998.6 gi|336477805|ref|YP_004616946.1| - 0.036 13.8 0.0 0.058 13.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M54 Astacin PF01400.19 gi|336477805|ref|YP_004616946.1| - 0.043 13.2 0.1 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M50B PF13398.1 gi|336477805|ref|YP_004616946.1| - 0.15 11.4 0.1 2.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Peptidase M50B-like DNA_binding_1 PF01035.15 gi|336477806|ref|YP_004616947.1| - 3.3e-27 94.0 0.0 3.7e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4 PF04545.11 gi|336477806|ref|YP_004616947.1| - 0.017 14.4 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 eIF-5a PF01287.15 gi|336477807|ref|YP_004616948.1| - 4e-15 55.5 1.0 8.3e-15 54.4 0.7 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|336477807|ref|YP_004616948.1| - 0.00013 21.7 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|336477807|ref|YP_004616948.1| - 0.0023 17.6 0.1 0.0057 16.3 0.0 1.7 2 0 0 2 2 2 1 KOW motif HlyD_3 PF13437.1 gi|336477807|ref|YP_004616948.1| - 0.0066 16.7 0.0 0.014 15.6 0.0 1.6 1 1 1 2 2 2 1 HlyD family secretion protein Arginase PF00491.16 gi|336477808|ref|YP_004616949.1| - 2.2e-76 256.8 0.1 2.5e-76 256.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family Lar_restr_allev PF14354.1 gi|336477809|ref|YP_004616950.1| - 0.094 13.0 0.5 0.19 12.0 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar PCMT PF01135.14 gi|336477810|ref|YP_004616951.1| - 9e-73 244.2 0.0 1.1e-72 243.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|336477810|ref|YP_004616951.1| - 1.2e-13 50.9 0.0 1.6e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477810|ref|YP_004616951.1| - 4.5e-10 40.1 0.0 7.3e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|336477810|ref|YP_004616951.1| - 4.1e-07 29.2 0.0 5.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|336477810|ref|YP_004616951.1| - 4.8e-07 29.5 0.0 6.6e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|336477810|ref|YP_004616951.1| - 7e-07 29.2 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336477810|ref|YP_004616951.1| - 1.4e-06 27.5 0.0 2e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|336477810|ref|YP_004616951.1| - 3.3e-06 26.5 0.0 5.1e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|336477810|ref|YP_004616951.1| - 9.2e-05 21.4 0.0 0.00013 20.9 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Ubie_methyltran PF01209.13 gi|336477810|ref|YP_004616951.1| - 0.00012 21.2 0.0 0.00017 20.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.1 gi|336477810|ref|YP_004616951.1| - 0.00022 22.0 0.0 0.00041 21.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336477810|ref|YP_004616951.1| - 0.00053 19.7 0.0 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|336477810|ref|YP_004616951.1| - 0.0008 18.5 0.0 0.0012 17.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|336477810|ref|YP_004616951.1| - 0.0012 19.3 0.0 0.0025 18.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|336477810|ref|YP_004616951.1| - 0.0044 16.1 0.0 0.0057 15.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.7 gi|336477810|ref|YP_004616951.1| - 0.021 15.2 0.0 0.039 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336477810|ref|YP_004616951.1| - 0.022 15.1 0.0 0.031 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_28 PF02636.12 gi|336477810|ref|YP_004616951.1| - 0.048 13.0 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF938 PF06080.7 gi|336477810|ref|YP_004616951.1| - 0.059 12.9 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.1 gi|336477810|ref|YP_004616951.1| - 0.061 13.0 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|336477810|ref|YP_004616951.1| - 0.14 10.7 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.4 gi|336477810|ref|YP_004616951.1| - 0.17 11.3 0.1 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF1614 PF07758.6 gi|336477811|ref|YP_004616952.1| - 2.2e-50 170.8 15.4 2.2e-50 170.8 10.7 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) His_biosynth PF00977.16 gi|336477812|ref|YP_004616953.1| - 1.5e-85 286.0 0.3 1.8e-85 285.8 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|336477812|ref|YP_004616953.1| - 4.3e-06 25.9 0.3 0.0025 16.9 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|336477812|ref|YP_004616953.1| - 0.00018 20.6 0.1 0.0078 15.3 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|336477812|ref|YP_004616953.1| - 0.00034 19.6 0.1 0.26 10.1 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|336477812|ref|YP_004616953.1| - 0.00052 18.9 0.0 0.0015 17.4 0.0 1.6 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|336477812|ref|YP_004616953.1| - 0.00081 18.7 1.1 0.0025 17.0 0.1 2.2 2 1 1 3 3 3 1 PcrB family IMPDH PF00478.20 gi|336477812|ref|YP_004616953.1| - 0.0012 17.8 0.2 0.14 11.0 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|336477812|ref|YP_004616953.1| - 0.0016 17.6 0.1 0.8 8.7 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Trp_syntA PF00290.15 gi|336477812|ref|YP_004616953.1| - 0.015 13.8 0.1 0.025 13.1 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain SBP_bac_3 PF00497.15 gi|336477812|ref|YP_004616953.1| - 0.08 12.1 0.0 0.2 10.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Peptidase_U32 PF01136.14 gi|336477813|ref|YP_004616954.1| - 2.1e-120 399.8 0.2 5e-86 287.4 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|336477813|ref|YP_004616954.1| - 2.6e-26 92.0 0.0 4.4e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 Collagenase Radical_SAM PF04055.16 gi|336477813|ref|YP_004616954.1| - 0.00022 21.4 0.1 0.1 12.7 0.0 3.3 2 1 1 3 3 3 2 Radical SAM superfamily PEP_mutase PF13714.1 gi|336477813|ref|YP_004616954.1| - 0.0089 15.2 0.2 0.39 9.9 0.0 2.8 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase BofA PF07441.6 gi|336477814|ref|YP_004616955.1| - 6.9e-06 25.9 24.9 8.7e-06 25.6 17.3 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Apq12 PF12716.2 gi|336477814|ref|YP_004616955.1| - 6.4 6.5 14.7 0.62 9.7 5.8 2.2 1 1 1 2 2 2 0 Nuclear pore assembly and biogenesis YqhR PF11085.3 gi|336477814|ref|YP_004616955.1| - 7.3 6.0 12.4 0.23 10.9 3.2 1.9 1 1 1 2 2 2 0 Conserved membrane protein YqhR Methyltransf_11 PF08241.7 gi|336477815|ref|YP_004616956.1| - 1.2e-21 76.9 0.0 1.9e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336477815|ref|YP_004616956.1| - 1.1e-14 54.2 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336477815|ref|YP_004616956.1| - 2.1e-14 53.5 0.0 2.5e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336477815|ref|YP_004616956.1| - 9.8e-14 51.5 0.0 1.9e-13 50.6 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336477815|ref|YP_004616956.1| - 4.2e-10 40.2 0.0 6.1e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336477815|ref|YP_004616956.1| - 1e-09 38.7 0.0 1.6e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336477815|ref|YP_004616956.1| - 5.5e-08 32.8 0.0 8.4e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|336477815|ref|YP_004616956.1| - 8.7e-08 31.5 0.0 1.1e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|336477815|ref|YP_004616956.1| - 2.3e-05 23.8 0.0 2.8e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|336477815|ref|YP_004616956.1| - 0.00015 21.4 0.0 0.0019 17.8 0.0 2.4 1 1 1 2 2 2 1 Hypothetical methyltransferase MTS PF05175.9 gi|336477815|ref|YP_004616956.1| - 0.00026 20.4 0.0 0.00036 19.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain FmrO PF07091.6 gi|336477815|ref|YP_004616956.1| - 0.00038 19.5 0.0 0.00052 19.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) TehB PF03848.9 gi|336477815|ref|YP_004616956.1| - 0.0037 16.4 0.0 0.005 16.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.13 gi|336477815|ref|YP_004616956.1| - 0.0076 15.5 0.1 0.14 11.4 0.0 2.5 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_9 PF08003.6 gi|336477815|ref|YP_004616956.1| - 0.013 14.1 0.0 0.015 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RepA_N PF06970.6 gi|336477815|ref|YP_004616956.1| - 0.015 15.0 0.1 0.03 14.0 0.1 1.5 1 0 0 1 1 1 0 Replication initiator protein A (RepA) N-terminus PrmA PF06325.8 gi|336477815|ref|YP_004616956.1| - 0.026 13.6 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|336477815|ref|YP_004616956.1| - 0.082 11.9 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.6 gi|336477815|ref|YP_004616956.1| - 0.083 12.3 0.0 0.17 11.3 0.0 1.7 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) tRNA-synt_1f PF01921.13 gi|336477816|ref|YP_004616957.1| - 6.4e-139 462.6 0.0 8.6e-139 462.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|336477816|ref|YP_004616957.1| - 9.4e-08 31.1 0.1 0.00011 21.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|336477816|ref|YP_004616957.1| - 2.1e-07 30.3 0.0 0.0052 15.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Peptidase_C62 PF12380.3 gi|336477816|ref|YP_004616957.1| - 0.14 10.9 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Gill-associated viral 3C-like peptidase PvlArgDC PF01862.11 gi|336477817|ref|YP_004616958.1| - 1.3e-66 223.2 0.1 1.5e-66 223.0 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) TPD PF14811.1 gi|336477819|ref|YP_004616960.1| - 3.2e-41 140.0 0.0 4.6e-41 139.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif HhH-GPD PF00730.20 gi|336477820|ref|YP_004616961.1| - 1e-14 54.6 0.0 1.5e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|336477820|ref|YP_004616961.1| - 0.00018 21.5 0.0 0.00063 19.8 0.0 1.9 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|336477820|ref|YP_004616961.1| - 0.00051 19.5 0.2 0.0019 17.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif CDV3 PF15359.1 gi|336477820|ref|YP_004616961.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Carnitine deficiency-associated protein 3 TFIIS_C PF01096.13 gi|336477821|ref|YP_004616962.1| - 0.075 12.6 0.1 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Pribosyltran_N PF13793.1 gi|336477822|ref|YP_004616963.1| - 6e-23 80.7 0.0 2e-21 75.9 0.0 2.2 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|336477822|ref|YP_004616963.1| - 7.5e-13 48.2 0.6 1.7e-12 47.1 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|336477822|ref|YP_004616963.1| - 1e-07 31.8 0.3 1.8e-07 31.0 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|336477822|ref|YP_004616963.1| - 3.8e-06 26.2 0.1 6.8e-06 25.4 0.1 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336477822|ref|YP_004616963.1| - 0.0011 18.3 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase MoaC PF01967.16 gi|336477823|ref|YP_004616964.1| - 7.3e-50 168.1 1.7 8.4e-50 167.9 1.2 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|336477825|ref|YP_004616966.1| - 2.2e-52 177.7 0.0 3e-52 177.3 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|336477825|ref|YP_004616966.1| - 1.6e-42 144.9 0.4 3.2e-42 144.0 0.0 1.6 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|336477825|ref|YP_004616966.1| - 6.3e-07 28.8 0.0 1.3e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family TrkA_N PF02254.13 gi|336477826|ref|YP_004616967.1| - 6.1e-27 93.9 0.5 1.6e-26 92.5 0.2 1.9 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.15 gi|336477826|ref|YP_004616967.1| - 3.9e-21 75.2 1.4 1e-20 73.8 0.2 2.1 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|336477826|ref|YP_004616967.1| - 5.7e-09 35.5 0.1 1.8e-08 33.9 0.1 1.9 1 0 0 1 1 1 1 DHHA1 domain XdhC_C PF13478.1 gi|336477826|ref|YP_004616967.1| - 0.00015 22.0 0.0 0.0043 17.3 0.0 2.4 1 1 0 2 2 2 1 XdhC Rossmann domain Methyltransf_31 PF13847.1 gi|336477826|ref|YP_004616967.1| - 0.00033 20.2 0.1 0.00082 18.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain ApbA PF02558.11 gi|336477826|ref|YP_004616967.1| - 0.00043 19.7 0.0 0.0011 18.4 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|336477826|ref|YP_004616967.1| - 0.0013 18.9 0.1 0.0046 17.1 0.1 1.8 1 1 1 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|336477826|ref|YP_004616967.1| - 0.0016 18.8 0.1 0.0072 16.7 0.0 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|336477826|ref|YP_004616967.1| - 0.0017 18.4 0.0 0.0058 16.7 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|336477826|ref|YP_004616967.1| - 0.0022 17.4 0.0 0.0045 16.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|336477826|ref|YP_004616967.1| - 0.0022 18.3 0.0 0.04 14.3 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|336477826|ref|YP_004616967.1| - 0.0022 17.7 0.0 0.006 16.3 0.0 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.9 gi|336477826|ref|YP_004616967.1| - 0.0036 17.2 0.0 0.012 15.4 0.0 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|336477826|ref|YP_004616967.1| - 0.0049 16.7 0.0 0.014 15.2 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.14 gi|336477826|ref|YP_004616967.1| - 0.01 14.9 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|336477826|ref|YP_004616967.1| - 0.016 14.3 0.0 0.047 12.8 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|336477826|ref|YP_004616967.1| - 0.032 14.2 0.1 0.094 12.7 0.0 1.7 2 0 0 2 2 2 0 NADH(P)-binding adh_short PF00106.20 gi|336477826|ref|YP_004616967.1| - 0.038 13.9 0.0 0.25 11.2 0.0 2.4 1 1 1 2 2 2 0 short chain dehydrogenase NAD_binding_8 PF13450.1 gi|336477826|ref|YP_004616967.1| - 0.049 13.6 0.0 0.14 12.2 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain CxxCxxCC PF03692.10 gi|336477827|ref|YP_004616968.1| - 3.4e-10 40.2 1.7 1.3e-09 38.4 0.5 2.3 2 1 0 2 2 2 1 Putative zinc- or iron-chelating domain Aconitase PF00330.15 gi|336477828|ref|YP_004616969.1| - 5.1e-87 292.2 0.2 1.4e-61 208.4 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) PRA-PH PF01503.12 gi|336477829|ref|YP_004616970.1| - 1.6e-12 47.5 0.0 1.8e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|336477829|ref|YP_004616970.1| - 0.11 12.4 2.8 0.069 13.1 0.6 1.6 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain HrcA_DNA-bdg PF03444.10 gi|336477830|ref|YP_004616971.1| - 1.4e-36 123.7 0.4 2.8e-36 122.7 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|336477830|ref|YP_004616971.1| - 4.2e-27 93.6 0.9 3.3e-12 45.9 0.0 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|336477830|ref|YP_004616971.1| - 7.8e-09 35.5 0.1 1.4e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|336477830|ref|YP_004616971.1| - 1.1e-06 28.1 0.1 2.4e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|336477830|ref|YP_004616971.1| - 0.02 14.5 0.0 0.056 13.1 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336477830|ref|YP_004616971.1| - 0.052 12.9 1.2 0.15 11.4 0.2 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|336477830|ref|YP_004616971.1| - 0.071 12.5 0.1 0.5 9.8 0.0 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 Aconitase_2_N PF06434.8 gi|336477830|ref|YP_004616971.1| - 0.086 12.2 0.5 0.13 11.6 0.1 1.5 2 0 0 2 2 2 0 Aconitate hydratase 2 N-terminus HTH_IclR PF09339.5 gi|336477830|ref|YP_004616971.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain NOG1 PF06858.9 gi|336477831|ref|YP_004616972.1| - 2.9e-21 75.0 0.1 5.8e-21 74.1 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|336477831|ref|YP_004616972.1| - 1.5e-17 63.6 0.0 3e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|336477831|ref|YP_004616972.1| - 5.2e-11 42.0 0.0 8.9e-11 41.3 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|336477831|ref|YP_004616972.1| - 1e-06 29.2 0.0 2e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|336477831|ref|YP_004616972.1| - 0.00062 19.2 0.0 0.0024 17.3 0.0 2.0 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|336477831|ref|YP_004616972.1| - 0.002 17.7 0.1 0.097 12.2 0.0 2.3 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|336477831|ref|YP_004616972.1| - 0.037 13.2 0.0 0.31 10.2 0.0 2.3 1 1 0 1 1 1 0 Protein of unknown function, DUF258 OKR_DC_1_N PF03709.10 gi|336477831|ref|YP_004616972.1| - 0.042 13.9 0.3 0.14 12.2 0.0 2.0 3 0 0 3 3 3 0 Orn/Lys/Arg decarboxylase, N-terminal domain Dynamin_N PF00350.18 gi|336477831|ref|YP_004616972.1| - 0.094 12.5 0.2 2.4 7.9 0.0 2.6 1 1 1 2 2 2 0 Dynamin family Aminotran_1_2 PF00155.16 gi|336477832|ref|YP_004616973.1| - 5.3e-64 216.4 0.0 6.3e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336477832|ref|YP_004616973.1| - 3.5e-12 46.0 0.0 6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|336477832|ref|YP_004616973.1| - 1.8e-10 40.1 0.0 3.7e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|336477832|ref|YP_004616973.1| - 3.8e-10 39.3 0.0 1.2e-09 37.7 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|336477832|ref|YP_004616973.1| - 1.1e-06 27.1 0.0 1.7e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|336477832|ref|YP_004616973.1| - 0.0053 15.4 0.0 0.033 12.8 0.0 1.9 2 0 0 2 2 2 1 Allinase SIS PF01380.17 gi|336477833|ref|YP_004616974.1| - 5.6e-18 64.8 0.0 8.1e-18 64.2 0.0 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|336477833|ref|YP_004616974.1| - 2.1e-06 27.4 4.0 0.00032 20.4 0.3 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.14 gi|336477833|ref|YP_004616974.1| - 0.074 12.1 0.3 0.1 11.6 0.2 1.2 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2073 PF09846.4 gi|336477835|ref|YP_004616976.1| - 1.2e-44 150.1 0.8 1.4e-44 150.0 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) GTP_EFTU PF00009.22 gi|336477836|ref|YP_004616977.1| - 7.1e-18 64.7 0.4 6.4e-08 32.2 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|336477836|ref|YP_004616977.1| - 4.5e-15 55.6 0.0 6.6e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.16 gi|336477836|ref|YP_004616977.1| - 1.1e-07 31.3 0.0 0.0054 15.9 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family SRPRB PF09439.5 gi|336477836|ref|YP_004616977.1| - 1.3e-05 24.5 0.0 0.0059 15.8 0.0 2.4 1 1 0 2 2 2 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|336477836|ref|YP_004616977.1| - 4.9e-05 22.6 0.2 0.00098 18.4 0.2 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|336477836|ref|YP_004616977.1| - 0.00058 20.6 0.0 0.0011 19.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336477836|ref|YP_004616977.1| - 0.0012 19.0 0.0 0.003 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|336477836|ref|YP_004616977.1| - 0.0013 19.2 0.0 0.012 16.1 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein AAA PF00004.24 gi|336477836|ref|YP_004616977.1| - 0.0029 17.7 0.1 0.0096 16.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|336477836|ref|YP_004616977.1| - 0.0031 17.8 0.0 0.0056 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.13 gi|336477836|ref|YP_004616977.1| - 0.0032 16.5 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 Septin DUF258 PF03193.11 gi|336477836|ref|YP_004616977.1| - 0.004 16.3 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|336477836|ref|YP_004616977.1| - 0.0045 16.7 0.0 0.011 15.4 0.0 1.6 2 0 0 2 2 1 1 NTPase ABC_tran PF00005.22 gi|336477836|ref|YP_004616977.1| - 0.0053 17.0 0.0 0.0069 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter Arch_ATPase PF01637.13 gi|336477836|ref|YP_004616977.1| - 0.0078 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase Parvo_NS1 PF01057.12 gi|336477836|ref|YP_004616977.1| - 0.011 14.5 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_16 PF13191.1 gi|336477836|ref|YP_004616977.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|336477836|ref|YP_004616977.1| - 0.013 15.1 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|336477836|ref|YP_004616977.1| - 0.015 14.0 0.1 0.47 9.1 0.0 2.8 3 0 0 3 3 3 0 ArgK protein Dynamin_N PF00350.18 gi|336477836|ref|YP_004616977.1| - 0.019 14.7 0.0 2.6 7.8 0.0 2.2 1 1 0 2 2 2 0 Dynamin family NACHT PF05729.7 gi|336477836|ref|YP_004616977.1| - 0.021 14.5 0.0 0.047 13.3 0.0 1.9 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|336477836|ref|YP_004616977.1| - 0.025 14.7 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|336477836|ref|YP_004616977.1| - 0.03 13.7 0.0 0.084 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|336477836|ref|YP_004616977.1| - 0.037 13.5 0.1 0.061 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|336477836|ref|YP_004616977.1| - 0.04 12.7 0.0 0.06 12.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|336477836|ref|YP_004616977.1| - 0.059 12.9 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|336477836|ref|YP_004616977.1| - 0.065 11.8 0.0 0.097 11.2 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase MobB PF03205.9 gi|336477836|ref|YP_004616977.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|336477836|ref|YP_004616977.1| - 0.13 11.7 0.0 0.77 9.1 0.0 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|336477836|ref|YP_004616977.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoU PF01895.14 gi|336477838|ref|YP_004616979.1| - 3.8e-28 97.7 5.5 6.6e-17 61.7 0.3 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|336477838|ref|YP_004616979.1| - 1.8e-08 33.9 0.0 3.6e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Membralin PF09746.4 gi|336477838|ref|YP_004616979.1| - 0.088 11.8 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Tumour-associated protein HAMP PF00672.20 gi|336477838|ref|YP_004616979.1| - 0.15 12.2 1.0 4.3 7.5 0.0 2.6 3 0 0 3 3 3 0 HAMP domain DUF111 PF01969.12 gi|336477839|ref|YP_004616980.1| - 8.1e-125 416.5 0.0 9.2e-125 416.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF458 PF04308.7 gi|336477839|ref|YP_004616980.1| - 0.0011 18.6 0.4 0.28 10.9 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF458) AAA PF00004.24 gi|336477840|ref|YP_004616981.1| - 3.4e-98 324.9 0.0 1.3e-48 164.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|336477840|ref|YP_004616981.1| - 2e-29 101.3 0.1 7.3e-29 99.5 0.0 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|336477840|ref|YP_004616981.1| - 8.3e-15 54.1 0.4 7.7e-14 51.0 0.4 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|336477840|ref|YP_004616981.1| - 1.8e-13 50.1 0.0 3.5e-06 26.2 0.0 2.9 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|336477840|ref|YP_004616981.1| - 4.2e-13 49.2 0.4 1.5e-05 24.7 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|336477840|ref|YP_004616981.1| - 1.4e-12 47.8 0.1 8.8e-05 22.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|336477840|ref|YP_004616981.1| - 6.5e-12 45.4 0.0 2.6e-05 24.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336477840|ref|YP_004616981.1| - 8.8e-12 45.3 0.8 0.0028 17.7 0.0 4.1 2 2 1 3 3 3 3 AAA domain AAA_17 PF13207.1 gi|336477840|ref|YP_004616981.1| - 1.9e-11 44.8 0.0 0.00036 21.3 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336477840|ref|YP_004616981.1| - 1.1e-10 41.8 0.0 0.00095 19.2 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.8 gi|336477840|ref|YP_004616981.1| - 4.3e-09 35.5 0.0 0.00022 20.0 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|336477840|ref|YP_004616981.1| - 7.7e-09 35.1 1.1 0.0014 18.3 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|336477840|ref|YP_004616981.1| - 8.4e-09 35.0 0.0 0.003 16.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|336477840|ref|YP_004616981.1| - 1.7e-08 33.8 0.0 0.005 15.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|336477840|ref|YP_004616981.1| - 4.4e-08 33.1 0.0 0.0072 16.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|336477840|ref|YP_004616981.1| - 2.1e-07 31.2 0.0 0.034 14.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|336477840|ref|YP_004616981.1| - 1.1e-06 27.9 0.4 0.033 13.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|336477840|ref|YP_004616981.1| - 2.3e-06 27.6 0.0 0.053 13.4 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|336477840|ref|YP_004616981.1| - 7e-06 25.5 7.6 0.1 12.0 0.1 4.1 2 2 2 4 4 4 2 AAA domain Sigma54_activat PF00158.21 gi|336477840|ref|YP_004616981.1| - 1e-05 25.0 0.0 0.073 12.5 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain PhoH PF02562.11 gi|336477840|ref|YP_004616981.1| - 1.2e-05 24.6 0.1 0.22 10.7 0.0 3.0 3 0 0 3 3 2 2 PhoH-like protein RNA_helicase PF00910.17 gi|336477840|ref|YP_004616981.1| - 1.9e-05 24.8 0.0 0.33 11.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|336477840|ref|YP_004616981.1| - 2.1e-05 24.8 0.0 0.13 12.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Arch_ATPase PF01637.13 gi|336477840|ref|YP_004616981.1| - 5.4e-05 23.0 0.0 1.2 8.8 0.0 3.5 2 1 1 3 3 3 1 Archaeal ATPase KaiC PF06745.8 gi|336477840|ref|YP_004616981.1| - 0.00011 21.4 3.1 0.18 10.8 0.0 3.6 2 2 2 4 4 4 2 KaiC AAA_3 PF07726.6 gi|336477840|ref|YP_004616981.1| - 0.00017 21.1 0.1 0.35 10.4 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|336477840|ref|YP_004616981.1| - 0.0002 20.3 0.2 0.34 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.1 gi|336477840|ref|YP_004616981.1| - 0.00023 21.2 0.0 0.28 11.2 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|336477840|ref|YP_004616981.1| - 0.00028 20.4 0.2 0.016 14.7 0.0 2.8 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|336477840|ref|YP_004616981.1| - 0.00038 20.0 0.9 0.47 10.0 0.4 2.6 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|336477840|ref|YP_004616981.1| - 0.00056 19.0 0.0 0.74 8.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|336477840|ref|YP_004616981.1| - 0.00077 18.3 0.0 0.98 8.2 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain DUF815 PF05673.8 gi|336477840|ref|YP_004616981.1| - 0.0011 17.9 0.0 0.59 9.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NTPase_1 PF03266.10 gi|336477840|ref|YP_004616981.1| - 0.0011 18.6 1.1 3.3 7.3 0.0 3.6 2 1 1 3 3 3 0 NTPase NACHT PF05729.7 gi|336477840|ref|YP_004616981.1| - 0.0025 17.5 0.3 5.9 6.5 0.0 3.5 4 0 0 4 4 3 0 NACHT domain ResIII PF04851.10 gi|336477840|ref|YP_004616981.1| - 0.0034 17.2 0.0 3.3 7.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|336477840|ref|YP_004616981.1| - 0.0043 16.6 0.4 3.5 7.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain Guanylate_kin PF00625.16 gi|336477840|ref|YP_004616981.1| - 0.0043 16.5 0.5 19 4.6 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase AAA_11 PF13086.1 gi|336477840|ref|YP_004616981.1| - 0.0055 16.3 0.0 1.6 8.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|336477840|ref|YP_004616981.1| - 0.0089 15.8 0.1 0.098 12.5 0.0 2.4 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain T2SE PF00437.15 gi|336477840|ref|YP_004616981.1| - 0.012 14.4 0.0 0.83 8.5 0.0 2.5 2 1 0 2 2 2 0 Type II/IV secretion system protein IPT PF01745.11 gi|336477840|ref|YP_004616981.1| - 0.013 14.7 0.6 1.3 8.1 0.0 2.8 3 0 0 3 3 3 0 Isopentenyl transferase SKI PF01202.17 gi|336477840|ref|YP_004616981.1| - 0.019 14.8 0.1 2.2 8.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin2 PF13189.1 gi|336477840|ref|YP_004616981.1| - 0.027 14.3 0.0 2.6 7.9 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_23 PF13476.1 gi|336477840|ref|YP_004616981.1| - 0.028 14.7 0.0 5.3 7.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|336477840|ref|YP_004616981.1| - 0.032 13.8 0.3 11 5.6 0.0 3.1 2 1 1 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|336477840|ref|YP_004616981.1| - 0.046 13.3 0.0 8.3 5.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein KTI12 PF08433.5 gi|336477840|ref|YP_004616981.1| - 0.071 12.3 0.0 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|336477840|ref|YP_004616981.1| - 0.22 11.0 0.0 0.76 9.2 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PRC PF05239.11 gi|336477841|ref|YP_004616982.1| - 7.9e-11 41.6 0.2 9.8e-11 41.3 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain Hydrolase_3 PF08282.7 gi|336477842|ref|YP_004616983.1| - 1.3e-26 93.7 0.1 1.8e-17 63.7 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|336477842|ref|YP_004616983.1| - 2.1e-07 30.5 0.0 2.2e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|336477842|ref|YP_004616983.1| - 2.9e-05 24.3 0.4 0.0012 18.9 0.0 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336477842|ref|YP_004616983.1| - 0.00033 21.1 1.7 0.99 9.7 0.1 3.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Rad51 PF08423.6 gi|336477843|ref|YP_004616984.1| - 4.2e-90 301.1 0.0 5.2e-90 300.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|336477843|ref|YP_004616984.1| - 2.1e-12 46.9 0.6 6.4e-12 45.4 0.4 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|336477843|ref|YP_004616984.1| - 2.2e-11 43.5 0.0 3.6e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|336477843|ref|YP_004616984.1| - 3.8e-09 36.0 0.0 0.00068 18.7 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein KaiC PF06745.8 gi|336477843|ref|YP_004616984.1| - 1.1e-06 27.9 0.0 1.5e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|336477843|ref|YP_004616984.1| - 2.1e-06 27.5 0.4 6.5e-06 25.9 0.3 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA_22 PF13401.1 gi|336477843|ref|YP_004616984.1| - 0.00088 19.4 0.1 0.0023 18.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain Cdd1 PF11731.3 gi|336477843|ref|YP_004616984.1| - 0.0011 18.9 0.0 0.0095 15.8 0.0 2.4 2 0 0 2 2 2 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|336477843|ref|YP_004616984.1| - 0.0025 17.3 0.0 0.011 15.3 0.0 2.0 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|336477843|ref|YP_004616984.1| - 0.0027 17.2 0.4 1.1 9.1 0.3 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif NACHT PF05729.7 gi|336477843|ref|YP_004616984.1| - 0.059 13.0 0.0 0.1 12.2 0.0 1.4 1 1 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|336477843|ref|YP_004616984.1| - 0.087 12.4 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|336477843|ref|YP_004616984.1| - 0.1 12.7 0.0 0.3 11.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CTP_transf_2 PF01467.21 gi|336477844|ref|YP_004616985.1| - 2.1e-11 44.1 0.0 3.8e-11 43.2 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|336477844|ref|YP_004616985.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase Pantoate_ligase PF02569.10 gi|336477844|ref|YP_004616985.1| - 0.044 12.5 0.1 0.37 9.5 0.0 2.0 2 0 0 2 2 2 0 Pantoate-beta-alanine ligase DUF4351 PF14261.1 gi|336477845|ref|YP_004616986.1| - 0.018 14.9 0.1 0.053 13.4 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4351) AP_endonuc_2 PF01261.19 gi|336477846|ref|YP_004616987.1| - 3.4e-15 55.9 0.0 4.3e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ABC_tran PF00005.22 gi|336477847|ref|YP_004616988.1| - 4.3e-33 114.5 0.0 7.9e-33 113.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477847|ref|YP_004616988.1| - 1.8e-14 54.4 3.5 1e-09 38.8 0.6 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336477847|ref|YP_004616988.1| - 1e-05 24.9 0.2 0.00035 19.8 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336477847|ref|YP_004616988.1| - 1e-05 24.7 0.4 0.004 16.2 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|336477847|ref|YP_004616988.1| - 8.7e-05 21.9 0.1 0.00024 20.5 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|336477847|ref|YP_004616988.1| - 0.00029 19.4 0.3 0.2 10.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|336477847|ref|YP_004616988.1| - 0.0014 18.9 0.6 0.0032 17.8 0.1 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|336477847|ref|YP_004616988.1| - 0.002 17.3 0.0 0.0034 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|336477847|ref|YP_004616988.1| - 0.017 15.3 0.1 2.3 8.5 0.1 2.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|336477847|ref|YP_004616988.1| - 0.049 13.5 0.1 0.16 11.8 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|336477847|ref|YP_004616988.1| - 0.15 11.8 0.1 0.36 10.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF3375 PF11855.3 gi|336477848|ref|YP_004616989.1| - 1.3e-08 34.0 13.7 0.0029 16.4 1.4 3.3 2 1 0 3 3 3 3 Protein of unknown function (DUF3375) HTH_Tnp_Tc3_1 PF11427.3 gi|336477848|ref|YP_004616989.1| - 2.2e-07 30.4 0.3 0.32 10.6 0.0 3.8 3 0 0 3 3 3 2 Tc3 transposase THP2 PF09432.5 gi|336477848|ref|YP_004616989.1| - 7e-07 29.1 12.9 0.0057 16.5 0.2 3.8 2 2 2 4 4 4 3 Tho complex subunit THP2 Baculo_PEP_C PF04513.7 gi|336477848|ref|YP_004616989.1| - 6e-06 26.1 0.3 0.11 12.2 0.1 3.7 3 0 0 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4363 PF14276.1 gi|336477848|ref|YP_004616989.1| - 1.1e-05 25.0 18.6 0.14 11.8 2.8 5.5 4 2 0 4 4 4 3 Domain of unknown function (DUF4363) MCPsignal PF00015.16 gi|336477848|ref|YP_004616989.1| - 0.00052 19.6 2.5 1.5 8.3 0.1 4.0 3 1 1 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Sec2p PF06428.6 gi|336477848|ref|YP_004616989.1| - 0.00083 19.1 4.6 0.74 9.7 0.0 5.0 3 3 1 4 4 4 1 GDP/GTP exchange factor Sec2p Seryl_tRNA_N PF02403.17 gi|336477848|ref|YP_004616989.1| - 0.0019 18.1 10.8 1.9 8.5 0.3 4.6 3 3 1 4 4 4 1 Seryl-tRNA synthetase N-terminal domain TPR_19 PF14559.1 gi|336477848|ref|YP_004616989.1| - 0.0029 17.9 0.0 6.4 7.1 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat Syntaxin PF00804.20 gi|336477848|ref|YP_004616989.1| - 0.007 16.5 22.9 1.3 9.2 1.3 5.9 1 1 3 5 5 5 2 Syntaxin ApoLp-III PF07464.6 gi|336477848|ref|YP_004616989.1| - 0.0093 15.9 6.6 0.2 11.6 0.2 3.6 3 1 0 3 3 3 1 Apolipophorin-III precursor (apoLp-III) Alpha-E PF04168.7 gi|336477848|ref|YP_004616989.1| - 0.018 14.4 9.4 0.33 10.2 0.0 3.9 4 1 0 4 4 4 0 A predicted alpha-helical domain with a conserved ER motif. LUC7 PF03194.10 gi|336477848|ref|YP_004616989.1| - 0.027 14.0 19.6 0.038 13.5 1.5 3.2 1 1 1 3 3 3 0 LUC7 N_terminus TBPIP PF07106.8 gi|336477848|ref|YP_004616989.1| - 0.032 13.7 13.0 0.78 9.2 0.2 4.2 2 2 2 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Reo_sigmaC PF04582.7 gi|336477848|ref|YP_004616989.1| - 0.032 13.4 2.9 0.55 9.3 0.5 3.4 2 2 1 4 4 4 0 Reovirus sigma C capsid protein HAMP PF00672.20 gi|336477848|ref|YP_004616989.1| - 0.033 14.3 10.8 10 6.4 0.5 5.3 4 2 0 4 4 4 0 HAMP domain Cauli_AT PF03233.8 gi|336477848|ref|YP_004616989.1| - 0.042 13.5 4.7 6.5 6.4 0.1 3.6 3 0 0 3 3 3 0 Aphid transmission protein MerR_1 PF13411.1 gi|336477848|ref|YP_004616989.1| - 0.066 12.9 0.5 9.2 6.1 0.0 3.4 4 0 0 4 4 3 0 MerR HTH family regulatory protein DUF2407_C PF13373.1 gi|336477848|ref|YP_004616989.1| - 0.13 12.2 3.0 5.3 6.9 0.1 3.3 3 0 0 3 3 3 0 DUF2407 C-terminal domain GrpE PF01025.14 gi|336477848|ref|YP_004616989.1| - 0.26 10.7 11.6 5.3 6.5 0.6 3.6 2 1 0 3 3 3 0 GrpE Lipoprotein_7 PF01540.11 gi|336477848|ref|YP_004616989.1| - 0.27 10.2 11.6 4.9 6.1 0.1 3.2 2 1 1 3 3 3 0 Adhesin lipoprotein IncA PF04156.9 gi|336477848|ref|YP_004616989.1| - 0.32 10.5 22.3 0.39 10.2 1.5 4.7 1 1 1 3 3 3 0 IncA protein H-kinase_dim PF02895.9 gi|336477848|ref|YP_004616989.1| - 0.33 11.3 8.4 19 5.7 0.1 5.2 4 1 0 4 4 4 0 Signal transducing histidine kinase, homodimeric domain ALMT PF11744.3 gi|336477848|ref|YP_004616989.1| - 0.37 9.3 2.5 2.1 6.9 0.1 2.7 1 1 0 2 2 2 0 Aluminium activated malate transporter DUF2379 PF09543.5 gi|336477848|ref|YP_004616989.1| - 0.53 10.2 8.1 5.2 7.0 0.2 3.8 3 2 0 3 3 3 0 Protein of unknown function (DUF2379) NPV_P10 PF05531.7 gi|336477848|ref|YP_004616989.1| - 0.53 10.5 10.8 1.3e+02 2.9 0.9 6.3 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF2730 PF10805.3 gi|336477848|ref|YP_004616989.1| - 1.1 9.0 6.5 56 3.5 0.0 5.4 6 2 2 8 8 5 0 Protein of unknown function (DUF2730) UPF0253 PF06786.7 gi|336477848|ref|YP_004616989.1| - 2.8 8.1 5.3 68 3.6 0.0 3.7 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0253) TMPIT PF07851.8 gi|336477848|ref|YP_004616989.1| - 2.8 6.9 11.3 0.66 8.9 0.1 3.3 2 1 0 3 3 3 0 TMPIT-like protein Flu_NS2 PF00601.14 gi|336477848|ref|YP_004616989.1| - 3.6 7.8 12.2 9.8 6.4 0.1 4.9 4 3 1 5 5 4 0 Influenza non-structural protein (NS2) Allexi_40kDa PF05549.6 gi|336477848|ref|YP_004616989.1| - 4.9 6.3 18.2 1.1 8.4 1.8 4.3 1 1 4 5 5 5 0 Allexivirus 40kDa protein FlgN PF05130.7 gi|336477848|ref|YP_004616989.1| - 8.9 6.5 10.5 2.9 8.1 0.3 3.6 2 1 1 3 3 3 0 FlgN protein CbiM PF01891.11 gi|336477849|ref|YP_004616990.1| - 3.1e-49 167.3 21.3 3.5e-49 167.1 14.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1129 PF06570.6 gi|336477849|ref|YP_004616990.1| - 1.6 7.9 10.6 0.2 10.9 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) EamA PF00892.15 gi|336477849|ref|YP_004616990.1| - 6 6.9 19.8 0.24 11.4 4.2 2.7 1 1 2 3 3 3 0 EamA-like transporter family DUF2919 PF11143.3 gi|336477849|ref|YP_004616990.1| - 6.8 6.5 7.2 19 5.0 0.4 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2919) PhaG_MnhG_YufB PF03334.9 gi|336477850|ref|YP_004616991.1| - 0.87 9.6 5.3 0.19 11.7 0.8 1.9 2 0 0 2 2 2 0 Na+/H+ antiporter subunit CbiQ PF02361.11 gi|336477851|ref|YP_004616992.1| - 6.4e-34 117.4 16.5 8.7e-34 117.0 11.4 1.2 1 0 0 1 1 1 1 Cobalt transport protein TP_methylase PF00590.15 gi|336477852|ref|YP_004616993.1| - 1.3e-27 96.8 0.0 1.9e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SnoaL_3 PF13474.1 gi|336477852|ref|YP_004616993.1| - 0.031 14.3 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain CbiD PF01888.12 gi|336477853|ref|YP_004616994.1| - 1.9e-54 184.3 1.4 3e-54 183.7 1.0 1.3 1 0 0 1 1 1 1 CbiD Stimulus_sens_1 PF13756.1 gi|336477853|ref|YP_004616994.1| - 0.041 14.2 0.0 0.078 13.3 0.0 1.5 1 0 0 1 1 1 0 Stimulus-sensing domain DNA_mis_repair PF01119.14 gi|336477854|ref|YP_004616995.1| - 2.9e-39 133.2 0.0 5.1e-39 132.4 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|336477854|ref|YP_004616995.1| - 6.8e-37 126.2 0.0 1.2e-36 125.4 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.1 gi|336477854|ref|YP_004616995.1| - 1.4e-14 53.9 1.4 3.7e-14 52.5 1.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|336477854|ref|YP_004616995.1| - 5.9e-12 45.2 0.4 1.5e-11 43.9 0.2 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.1 gi|336477854|ref|YP_004616995.1| - 0.056 13.1 0.2 0.15 11.7 0.1 1.7 1 0 0 1 1 1 0 YokU-like protein MutS_V PF00488.16 gi|336477855|ref|YP_004616996.1| - 1.1e-98 329.3 0.0 1.7e-98 328.7 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|336477855|ref|YP_004616996.1| - 1.3e-50 172.0 0.2 5.8e-50 169.9 0.0 2.0 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|336477855|ref|YP_004616996.1| - 1.6e-44 150.5 0.0 3.5e-44 149.4 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_II PF05188.12 gi|336477855|ref|YP_004616996.1| - 3.7e-31 108.0 0.0 1e-30 106.5 0.0 1.8 1 0 0 1 1 1 1 MutS domain II MutS_IV PF05190.13 gi|336477855|ref|YP_004616996.1| - 7.6e-31 106.1 0.2 2e-30 104.7 0.2 1.8 1 0 0 1 1 1 1 MutS family domain IV AAA_29 PF13555.1 gi|336477855|ref|YP_004616996.1| - 0.0028 17.1 0.0 0.0069 15.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336477855|ref|YP_004616996.1| - 0.03 14.6 2.1 0.57 10.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|336477855|ref|YP_004616996.1| - 0.059 13.2 0.0 0.44 10.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain Gloverin PF10793.4 gi|336477855|ref|YP_004616996.1| - 0.11 12.1 0.0 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 Gloverin-like protein HTH_5 PF01022.15 gi|336477856|ref|YP_004616997.1| - 3.5e-10 39.3 0.2 5.9e-10 38.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336477856|ref|YP_004616997.1| - 4.9e-08 32.6 0.0 1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336477856|ref|YP_004616997.1| - 1e-05 24.8 0.0 2.5e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336477856|ref|YP_004616997.1| - 8.2e-05 22.2 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336477856|ref|YP_004616997.1| - 0.00034 20.2 0.0 0.00081 19.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336477856|ref|YP_004616997.1| - 0.0018 17.8 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|336477856|ref|YP_004616997.1| - 0.0031 17.3 0.0 0.0082 15.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|336477856|ref|YP_004616997.1| - 0.0036 17.3 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|336477856|ref|YP_004616997.1| - 0.024 14.7 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|336477856|ref|YP_004616997.1| - 0.045 13.4 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|336477856|ref|YP_004616997.1| - 0.063 13.6 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain AP_endonuc_2 PF01261.19 gi|336477857|ref|YP_004616998.1| - 2.5e-19 69.4 0.2 1.1e-18 67.3 0.1 1.9 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Peripla_BP_2 PF01497.13 gi|336477858|ref|YP_004616999.1| - 2.5e-42 144.6 0.1 3.4e-42 144.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|336477859|ref|YP_004617000.1| - 2.7e-91 305.6 34.5 3.4e-91 305.3 23.9 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|336477859|ref|YP_004617000.1| - 0.03 13.5 31.6 0.0055 16.0 15.7 2.6 1 1 1 2 2 2 0 ABC 3 transport family ABC_tran PF00005.22 gi|336477860|ref|YP_004617001.1| - 1.7e-34 119.0 0.1 2.4e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336477860|ref|YP_004617001.1| - 2.9e-12 47.1 1.3 4.9e-10 39.8 0.9 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336477860|ref|YP_004617001.1| - 2.7e-07 30.0 0.5 6.2e-07 28.8 0.3 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336477860|ref|YP_004617001.1| - 1.5e-05 24.2 7.5 0.0046 16.0 0.1 2.4 1 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|336477860|ref|YP_004617001.1| - 4.7e-05 23.5 0.1 0.00036 20.7 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|336477860|ref|YP_004617001.1| - 0.00012 22.4 0.6 0.00018 21.8 0.4 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336477860|ref|YP_004617001.1| - 0.00013 22.0 0.6 0.0015 18.7 0.4 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|336477860|ref|YP_004617001.1| - 0.00036 20.2 0.2 0.00078 19.1 0.0 1.8 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|336477860|ref|YP_004617001.1| - 0.0014 17.6 0.5 0.0036 16.2 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|336477860|ref|YP_004617001.1| - 0.002 18.1 0.3 0.0064 16.4 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|336477860|ref|YP_004617001.1| - 0.0021 17.7 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336477860|ref|YP_004617001.1| - 0.0022 17.5 0.1 0.0049 16.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|336477860|ref|YP_004617001.1| - 0.0027 16.8 0.0 0.0049 15.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|336477860|ref|YP_004617001.1| - 0.0046 16.8 0.1 0.021 14.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|336477860|ref|YP_004617001.1| - 0.0049 15.7 0.1 0.018 13.8 0.1 1.9 3 0 0 3 3 3 1 NB-ARC domain SbcCD_C PF13558.1 gi|336477860|ref|YP_004617001.1| - 0.0078 16.1 0.0 0.069 13.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit PIF1 PF05970.9 gi|336477860|ref|YP_004617001.1| - 0.0078 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase AAA_19 PF13245.1 gi|336477860|ref|YP_004617001.1| - 0.0098 15.6 0.0 0.026 14.2 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|336477860|ref|YP_004617001.1| - 0.013 15.1 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|336477860|ref|YP_004617001.1| - 0.014 16.2 0.0 0.021 15.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|336477860|ref|YP_004617001.1| - 0.015 14.4 0.0 0.053 12.6 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|336477860|ref|YP_004617001.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|336477860|ref|YP_004617001.1| - 0.016 14.8 0.2 0.025 14.2 0.2 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|336477860|ref|YP_004617001.1| - 0.018 14.7 0.1 0.086 12.5 0.0 2.1 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.4 gi|336477860|ref|YP_004617001.1| - 0.019 13.5 1.0 0.28 9.7 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|336477860|ref|YP_004617001.1| - 0.023 14.3 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.20 gi|336477860|ref|YP_004617001.1| - 0.031 13.7 0.0 0.044 13.2 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.17 gi|336477860|ref|YP_004617001.1| - 0.037 13.4 0.0 0.084 12.3 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|336477860|ref|YP_004617001.1| - 0.039 13.6 0.4 0.33 10.6 0.0 2.3 2 1 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|336477860|ref|YP_004617001.1| - 0.039 13.1 0.1 0.086 12.0 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|336477860|ref|YP_004617001.1| - 0.044 12.2 0.2 0.35 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336477860|ref|YP_004617001.1| - 0.049 13.0 0.4 0.28 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|336477860|ref|YP_004617001.1| - 0.071 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|336477860|ref|YP_004617001.1| - 0.073 12.5 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|336477860|ref|YP_004617001.1| - 0.076 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein FMN_red PF03358.10 gi|336477861|ref|YP_004617002.1| - 7.1e-12 45.0 0.2 1e-11 44.5 0.1 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|336477861|ref|YP_004617002.1| - 0.00014 21.8 1.0 0.0004 20.3 0.7 1.8 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|336477861|ref|YP_004617002.1| - 0.00051 19.6 0.0 0.00065 19.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|336477861|ref|YP_004617002.1| - 0.0025 17.8 0.0 0.2 11.6 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Hydantoinase_A PF01968.13 gi|336477862|ref|YP_004617003.1| - 8.9e-79 264.5 1.1 3.6e-78 262.5 0.0 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|336477862|ref|YP_004617003.1| - 4.1e-42 143.6 0.9 1.5e-38 132.0 0.0 2.9 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|336477862|ref|YP_004617003.1| - 3e-06 25.8 2.3 0.023 13.0 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|336477862|ref|YP_004617003.1| - 0.022 14.0 0.1 0.76 9.0 0.0 2.4 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DDR PF08841.5 gi|336477862|ref|YP_004617003.1| - 0.034 12.9 0.3 0.062 12.1 0.2 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain FtsA PF14450.1 gi|336477862|ref|YP_004617003.1| - 0.25 11.1 3.2 2.7 7.8 0.2 2.5 2 0 0 2 2 2 0 Cell division protein FtsA MtaB PF12176.3 gi|336477863|ref|YP_004617004.1| - 5.5e-244 809.7 2.1 6.1e-244 809.5 1.4 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.14 gi|336477864|ref|YP_004617005.1| - 2.2e-19 69.4 0.4 3.5e-19 68.8 0.3 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|336477864|ref|YP_004617005.1| - 1.2e-14 54.0 0.0 2.5e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain DNA_pol3_gamma3 PF12169.3 gi|336477864|ref|YP_004617005.1| - 0.0065 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III MtaB PF12176.3 gi|336477865|ref|YP_004617006.1| - 1.8e-231 768.4 2.9 2e-231 768.3 2.0 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.14 gi|336477866|ref|YP_004617007.1| - 7e-20 71.0 0.1 1.1e-19 70.4 0.1 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|336477866|ref|YP_004617007.1| - 4.3e-15 55.5 0.1 1.1e-14 54.2 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain DNA_pol3_gamma3 PF12169.3 gi|336477866|ref|YP_004617007.1| - 0.031 14.0 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III DUF2375 PF09558.5 gi|336477866|ref|YP_004617007.1| - 0.037 13.8 0.1 0.11 12.4 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2375) DUF3834 PF12916.2 gi|336477866|ref|YP_004617007.1| - 0.057 12.4 0.0 0.17 10.8 0.0 1.6 1 1 0 2 2 2 0 Protein of unknown function (DUF3834) Ocnus PF05005.10 gi|336477866|ref|YP_004617007.1| - 0.061 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) PAS_9 PF13426.1 gi|336477867|ref|YP_004617008.1| - 8.4e-64 212.4 3.5 8.1e-14 51.8 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|336477867|ref|YP_004617008.1| - 1.9e-58 195.1 0.3 2.2e-11 43.5 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.6 gi|336477867|ref|YP_004617008.1| - 1e-43 147.3 0.1 4.1e-17 62.0 0.1 6.4 6 0 0 6 6 6 5 PAS fold PAS_4 PF08448.5 gi|336477867|ref|YP_004617008.1| - 2.4e-40 136.9 0.0 3e-07 30.4 0.0 6.5 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|336477867|ref|YP_004617008.1| - 2.8e-33 112.6 0.1 2.4e-07 30.3 0.1 4.8 4 0 0 4 4 4 4 PAS domain GAF_2 PF13185.1 gi|336477867|ref|YP_004617008.1| - 2.4e-16 60.5 0.0 3.3e-08 34.1 0.0 2.8 2 1 0 2 2 2 2 GAF domain PAS_11 PF14598.1 gi|336477867|ref|YP_004617008.1| - 2.8e-11 43.3 0.0 2.2e-05 24.3 0.0 4.4 5 0 0 5 5 5 2 PAS domain GAF_3 PF13492.1 gi|336477867|ref|YP_004617008.1| - 8.5e-08 32.3 0.0 9.7e-07 28.9 0.0 2.6 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.2 gi|336477867|ref|YP_004617008.1| - 0.0004 20.3 0.6 31 4.6 0.0 6.1 5 2 0 5 5 5 0 PAS fold cobW PF02492.14 gi|336477868|ref|YP_004617009.1| - 7.8e-37 126.4 0.1 4.3e-36 124.0 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|336477868|ref|YP_004617009.1| - 0.00012 21.8 0.9 0.00074 19.2 0.1 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|336477868|ref|YP_004617009.1| - 0.00051 19.5 1.1 0.0008 18.9 0.2 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|336477868|ref|YP_004617009.1| - 0.0029 17.0 3.7 0.0033 16.8 0.7 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|336477868|ref|YP_004617009.1| - 0.0035 16.1 1.1 0.0066 15.2 0.3 1.8 2 0 0 2 2 2 1 ArgK protein IFN-gamma PF00714.12 gi|336477868|ref|YP_004617009.1| - 0.0089 15.8 1.6 0.023 14.5 1.1 1.6 1 0 0 1 1 1 1 Interferon gamma KTI12 PF08433.5 gi|336477868|ref|YP_004617009.1| - 0.031 13.4 0.1 0.087 12.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Glyco_transf_4 PF13439.1 gi|336477868|ref|YP_004617009.1| - 0.059 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 LpxK PF02606.9 gi|336477868|ref|YP_004617009.1| - 0.08 11.8 0.6 0.21 10.5 0.3 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_19 PF13245.1 gi|336477868|ref|YP_004617009.1| - 0.13 12.0 0.2 0.29 10.9 0.2 1.6 1 0 0 1 1 1 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|336477868|ref|YP_004617009.1| - 0.25 9.9 1.2 1 7.8 0.1 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_1 PF03029.12 gi|336477868|ref|YP_004617009.1| - 0.43 10.0 2.0 0.65 9.4 0.1 2.2 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|336477868|ref|YP_004617009.1| - 1.1 9.5 3.8 0.55 10.5 0.4 2.2 2 1 0 2 2 2 0 AAA domain DUF4445 PF14574.1 gi|336477869|ref|YP_004617010.1| - 1.7e-99 332.8 4.1 2.6e-99 332.2 2.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|336477869|ref|YP_004617010.1| - 5.2e-06 26.7 10.6 1.1e-05 25.7 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|336477869|ref|YP_004617010.1| - 2.1e-05 24.3 4.3 3.9e-05 23.4 3.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477869|ref|YP_004617010.1| - 4.1e-05 23.2 13.2 0.00013 21.6 9.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336477869|ref|YP_004617010.1| - 5.6e-05 22.9 9.0 0.00012 21.7 6.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336477869|ref|YP_004617010.1| - 0.00011 21.9 11.0 0.057 13.3 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336477869|ref|YP_004617010.1| - 0.00018 22.1 11.3 0.00042 20.9 1.2 2.5 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|336477869|ref|YP_004617010.1| - 0.00025 21.2 21.8 0.00079 19.6 7.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336477869|ref|YP_004617010.1| - 0.0013 18.2 4.5 0.0013 18.2 3.1 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336477869|ref|YP_004617010.1| - 0.012 15.8 12.2 0.18 12.2 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336477869|ref|YP_004617010.1| - 0.015 15.6 4.9 0.069 13.5 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477869|ref|YP_004617010.1| - 0.034 14.0 11.9 0.35 10.8 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336477869|ref|YP_004617010.1| - 0.063 13.8 15.2 0.11 13.0 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336477869|ref|YP_004617010.1| - 1.3 9.4 8.1 2 8.9 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477869|ref|YP_004617010.1| - 3.4 7.7 11.2 0.85 9.6 1.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF326 PF03860.11 gi|336477869|ref|YP_004617010.1| - 5 7.0 9.5 2.2 8.2 0.3 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) URO-D PF01208.12 gi|336477870|ref|YP_004617011.1| - 1.9e-90 303.2 0.1 2.1e-90 303.0 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MxiH PF09392.5 gi|336477870|ref|YP_004617011.1| - 0.0096 16.4 1.6 1.6 9.3 0.4 2.5 2 0 0 2 2 2 2 Type III secretion needle MxiH like tRNA-synt_1e PF01406.14 gi|336477871|ref|YP_004617012.1| - 3.7e-77 259.4 0.1 5.9e-77 258.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|336477871|ref|YP_004617012.1| - 1.5e-13 50.1 0.1 1.3e-06 27.4 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|336477871|ref|YP_004617012.1| - 2.1e-05 23.3 0.1 0.0035 16.0 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1c PF00749.16 gi|336477871|ref|YP_004617012.1| - 0.0045 15.6 1.0 0.032 12.8 0.1 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain DALR_2 PF09190.6 gi|336477871|ref|YP_004617012.1| - 0.0079 16.4 0.1 0.031 14.5 0.0 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1 PF00133.17 gi|336477871|ref|YP_004617012.1| - 0.0079 14.2 0.0 0.014 13.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1b PF00579.20 gi|336477871|ref|YP_004617012.1| - 0.025 13.7 0.5 0.047 12.8 0.3 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (W and Y) DUF16 PF01519.11 gi|336477871|ref|YP_004617012.1| - 0.071 13.3 1.6 0.16 12.1 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF16 ABC2_membrane PF01061.19 gi|336477872|ref|YP_004617013.1| - 2.9e-22 78.8 24.1 2.9e-22 78.8 16.7 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336477872|ref|YP_004617013.1| - 6e-09 35.3 36.7 8.8e-09 34.8 25.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein FeThRed_B PF02943.10 gi|336477873|ref|YP_004617014.1| - 3.9e-15 55.5 2.1 4.1e-15 55.4 1.4 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Glutaredoxin PF00462.19 gi|336477874|ref|YP_004617015.1| - 2.1e-12 46.8 0.1 2.7e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin ArsC PF03960.10 gi|336477874|ref|YP_004617015.1| - 2.8e-07 30.6 0.3 8.4e-06 25.8 0.1 2.0 1 1 1 2 2 2 1 ArsC family GST_N_3 PF13417.1 gi|336477874|ref|YP_004617015.1| - 4.2e-07 30.0 0.0 5.2e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|336477874|ref|YP_004617015.1| - 0.0024 17.8 0.0 0.0033 17.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain TFIIIC_sub6 PF10419.4 gi|336477874|ref|YP_004617015.1| - 0.017 14.5 0.0 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 TFIIIC subunit RnfC_N PF13375.1 gi|336477874|ref|YP_004617015.1| - 0.023 14.4 0.0 0.026 14.2 0.0 1.1 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF1462 PF07315.6 gi|336477874|ref|YP_004617015.1| - 0.028 14.4 0.0 0.034 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) GST_N PF02798.15 gi|336477874|ref|YP_004617015.1| - 0.044 13.9 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.1 gi|336477874|ref|YP_004617015.1| - 0.055 13.2 0.0 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|336477874|ref|YP_004617015.1| - 0.064 13.4 1.0 0.15 12.2 0.7 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|336477874|ref|YP_004617015.1| - 0.2 11.6 0.8 0.99 9.3 0.5 1.8 1 1 0 1 1 1 0 Thioredoxin Rieske PF00355.21 gi|336477875|ref|YP_004617016.1| - 8.8e-19 66.8 0.1 1.1e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|336477875|ref|YP_004617016.1| - 4.3e-15 55.2 0.0 5.1e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Thioredox_DsbH PF03190.10 gi|336477876|ref|YP_004617017.1| - 5.4e-72 240.8 0.2 1e-71 239.9 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|336477876|ref|YP_004617017.1| - 2e-12 46.9 0.1 5.4e-12 45.5 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_76 PF03663.9 gi|336477876|ref|YP_004617017.1| - 2.4e-08 33.7 1.8 0.0026 17.2 0.2 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 76 Glyco_hydro_88 PF07470.8 gi|336477876|ref|YP_004617017.1| - 1.3e-07 31.0 1.7 0.0046 16.0 0.0 2.5 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_9 PF00759.14 gi|336477876|ref|YP_004617017.1| - 4.8e-05 22.4 0.3 0.0057 15.6 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 9 Pectate_lyase_2 PF06917.7 gi|336477876|ref|YP_004617017.1| - 5.4e-05 21.6 1.9 0.12 10.6 0.1 3.2 2 1 1 3 3 3 3 Periplasmic pectate lyase LANC_like PF05147.8 gi|336477876|ref|YP_004617017.1| - 6.9e-05 21.5 1.9 1.1 7.7 0.1 3.6 3 0 0 3 3 3 2 Lanthionine synthetase C-like protein GlcNAc_2-epim PF07221.6 gi|336477876|ref|YP_004617017.1| - 0.00019 20.5 0.9 0.27 10.2 0.0 2.9 2 2 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.1 gi|336477876|ref|YP_004617017.1| - 0.00045 20.3 0.3 0.0035 17.5 0.1 2.3 2 0 0 2 2 2 1 Thioredoxin-like domain C5-epim_C PF06662.8 gi|336477876|ref|YP_004617017.1| - 0.0012 18.2 6.9 0.068 12.4 0.3 4.0 2 2 2 4 4 4 1 D-glucuronyl C5-epimerase C-terminus Prenyltrans_1 PF13243.1 gi|336477876|ref|YP_004617017.1| - 0.16 11.9 0.5 1.2 9.1 0.0 2.7 3 0 0 3 3 3 0 Prenyltransferase-like DHBP_synthase PF00926.14 gi|336477877|ref|YP_004617018.1| - 9.3e-60 201.1 0.0 1.1e-59 200.9 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|336477878|ref|YP_004617019.1| - 1.1e-44 150.8 0.0 1.8e-44 150.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|336477878|ref|YP_004617019.1| - 0.00032 20.3 0.1 0.00059 19.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|336477878|ref|YP_004617019.1| - 0.0025 17.5 0.0 0.0065 16.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|336477878|ref|YP_004617019.1| - 0.01 15.2 0.1 0.018 14.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|336477878|ref|YP_004617019.1| - 0.015 15.0 0.0 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain SelB-wing_3 PF09107.6 gi|336477878|ref|YP_004617019.1| - 0.029 13.7 0.0 0.11 11.9 0.0 1.9 2 0 0 2 2 2 0 Elongation factor SelB, winged helix HTH_Crp_2 PF13545.1 gi|336477878|ref|YP_004617019.1| - 0.039 13.7 0.1 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HxlR PF01638.12 gi|336477878|ref|YP_004617019.1| - 0.089 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Rrf2 PF02082.15 gi|336477878|ref|YP_004617019.1| - 0.094 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Replic_Relax PF13814.1 gi|336477878|ref|YP_004617019.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Crp PF00325.15 gi|336477878|ref|YP_004617019.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Fibrillarin PF01269.12 gi|336477879|ref|YP_004617020.1| - 1.2e-85 286.0 0.1 1.3e-85 285.9 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.7 gi|336477879|ref|YP_004617020.1| - 0.0049 15.7 0.0 0.012 14.5 0.0 1.6 1 1 1 2 2 2 1 DREV methyltransferase Nop PF01798.13 gi|336477880|ref|YP_004617021.1| - 5.1e-52 175.1 0.1 8.3e-52 174.4 0.1 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|336477880|ref|YP_004617021.1| - 1.4e-13 50.3 0.0 3.3e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 NOSIC (NUC001) domain GHMP_kinases_C PF08544.8 gi|336477881|ref|YP_004617022.1| - 4.3e-10 39.6 0.0 9.6e-10 38.5 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|336477881|ref|YP_004617022.1| - 1.9e-08 34.2 0.8 4.4e-08 33.0 0.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain Pyr_redox_2 PF07992.9 gi|336477882|ref|YP_004617023.1| - 7.9e-30 104.2 0.0 6.3e-29 101.2 0.0 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336477882|ref|YP_004617023.1| - 2e-21 76.1 0.0 3.3e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|336477882|ref|YP_004617023.1| - 1.1e-11 44.9 0.0 2.5e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336477882|ref|YP_004617023.1| - 3e-11 43.7 0.0 1e-08 35.5 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|336477882|ref|YP_004617023.1| - 1.1e-08 34.4 0.0 0.00028 19.9 0.0 3.0 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|336477882|ref|YP_004617023.1| - 0.087 13.0 0.0 0.26 11.5 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding OrfB_IS605 PF01385.14 gi|336477883|ref|YP_004617024.1| - 5.5e-44 150.2 7.7 5.5e-44 150.2 5.3 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|336477883|ref|YP_004617024.1| - 1.6e-21 75.7 0.4 3.1e-21 74.7 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|336477883|ref|YP_004617024.1| - 5.6e-20 70.3 0.2 2.6e-19 68.2 0.5 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2296 PF10058.4 gi|336477883|ref|YP_004617024.1| - 0.063 13.0 1.0 0.14 11.9 0.7 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Prok-RING_1 PF14446.1 gi|336477883|ref|YP_004617024.1| - 0.18 11.5 1.3 0.33 10.7 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|336477883|ref|YP_004617024.1| - 0.26 11.1 1.6 0.49 10.2 1.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|336477883|ref|YP_004617024.1| - 1.4 8.5 4.4 13 5.4 3.1 2.3 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|336477883|ref|YP_004617024.1| - 6.4 5.9 7.5 8.8 5.5 1.0 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others CS PF04969.11 gi|336477884|ref|YP_004617025.1| - 0.00011 22.6 0.0 0.00015 22.2 0.0 1.2 1 0 0 1 1 1 1 CS domain HSP20 PF00011.16 gi|336477884|ref|YP_004617025.1| - 0.022 14.6 0.0 0.8 9.5 0.0 2.0 1 1 0 2 2 2 0 Hsp20/alpha crystallin family Helicase_C_2 PF13307.1 gi|336477885|ref|YP_004617026.1| - 5.1e-29 101.3 0.6 1.5e-28 99.8 0.0 2.1 2 1 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|336477885|ref|YP_004617026.1| - 1.8e-18 66.5 0.7 1.4e-17 63.6 0.5 2.1 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|336477885|ref|YP_004617026.1| - 1.7e-08 34.1 0.1 6.3e-06 25.7 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|336477885|ref|YP_004617026.1| - 1.8e-05 24.6 3.1 0.00037 20.3 2.1 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|336477885|ref|YP_004617026.1| - 2.2e-05 23.7 0.1 0.00034 19.9 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein DUF2075 PF09848.4 gi|336477885|ref|YP_004617026.1| - 0.0042 16.0 0.1 0.14 11.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|336477885|ref|YP_004617026.1| - 0.0083 16.3 5.7 1.5 9.0 0.0 3.7 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|336477885|ref|YP_004617026.1| - 0.0089 15.6 0.0 0.032 13.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|336477885|ref|YP_004617026.1| - 0.009 15.1 0.0 0.023 13.7 0.0 1.7 1 0 0 1 1 1 1 KaiC Zot PF05707.7 gi|336477885|ref|YP_004617026.1| - 0.034 13.5 0.0 0.32 10.4 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ArsA_ATPase PF02374.10 gi|336477885|ref|YP_004617026.1| - 0.059 12.4 0.3 0.11 11.4 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase Sigma54_activat PF00158.21 gi|336477885|ref|YP_004617026.1| - 0.064 12.7 0.0 0.27 10.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|336477885|ref|YP_004617026.1| - 0.07 12.5 0.1 1.1 8.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain Pardaxin PF07425.6 gi|336477885|ref|YP_004617026.1| - 0.15 11.4 0.1 0.52 9.7 0.1 1.9 1 0 0 1 1 1 0 Pardaxin DUF1628 PF07790.6 gi|336477886|ref|YP_004617027.1| - 1.6e-09 38.3 3.2 1.7e-09 38.2 1.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Fer4 PF00037.22 gi|336477887|ref|YP_004617028.1| - 1.1e-19 69.0 20.6 1.8e-10 39.9 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336477887|ref|YP_004617028.1| - 2e-16 59.0 19.0 3.3e-09 36.2 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336477887|ref|YP_004617028.1| - 7e-15 54.5 25.5 3.5e-10 39.5 10.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477887|ref|YP_004617028.1| - 4.5e-14 52.5 10.6 6.1e-14 52.1 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477887|ref|YP_004617028.1| - 9.8e-13 47.2 18.3 1.5e-06 27.7 4.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336477887|ref|YP_004617028.1| - 3.5e-12 46.4 10.4 4.9e-12 45.9 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477887|ref|YP_004617028.1| - 3.1e-10 40.6 10.9 2.4e-05 24.9 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|336477887|ref|YP_004617028.1| - 7e-10 38.4 15.7 4.1e-05 23.5 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477887|ref|YP_004617028.1| - 1.3e-09 37.7 12.7 2.2e-09 37.0 8.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336477887|ref|YP_004617028.1| - 5.6e-08 32.7 22.3 0.0004 20.7 5.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336477887|ref|YP_004617028.1| - 4.8e-07 29.6 12.3 1e-05 25.4 8.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336477887|ref|YP_004617028.1| - 7.2e-07 29.5 12.4 0.00081 19.7 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336477887|ref|YP_004617028.1| - 5.3e-06 26.9 19.6 0.00069 20.1 13.6 2.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|336477887|ref|YP_004617028.1| - 5.6e-06 26.1 4.0 5.7e-06 26.1 2.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336477887|ref|YP_004617028.1| - 1.7e-05 25.0 11.5 0.092 13.1 8.0 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336477887|ref|YP_004617028.1| - 0.00081 19.7 20.8 0.093 13.1 4.2 3.0 2 2 1 3 3 3 3 4Fe-4S single cluster domain RLI PF04068.10 gi|336477887|ref|YP_004617028.1| - 0.095 12.3 6.1 8.9 6.0 0.0 3.7 4 0 0 4 4 4 0 Possible Fer4-like domain in RNase L inhibitor, RLI MSSP PF03940.8 gi|336477887|ref|YP_004617028.1| - 0.66 9.4 11.7 1.4 8.3 2.4 2.0 2 0 0 2 2 2 0 Male specific sperm protein Fer4_20 PF14691.1 gi|336477887|ref|YP_004617028.1| - 0.77 9.3 9.1 0.77 9.4 0.9 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF4001 PF13165.1 gi|336477887|ref|YP_004617028.1| - 1.8 8.3 4.7 4.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) Semialdhyde_dhC PF02774.13 gi|336477888|ref|YP_004617029.1| - 1.2e-37 129.5 0.0 2e-37 128.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|336477888|ref|YP_004617029.1| - 2.9e-34 117.9 0.0 4.9e-34 117.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336477888|ref|YP_004617029.1| - 0.00075 20.0 0.0 0.0017 18.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|336477888|ref|YP_004617029.1| - 0.003 18.1 0.0 0.0054 17.2 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|336477888|ref|YP_004617029.1| - 0.0056 16.6 0.0 0.0095 15.8 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|336477888|ref|YP_004617029.1| - 0.014 15.4 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding tRNA_anti-like PF12869.2 gi|336477889|ref|YP_004617030.1| - 0.019 14.4 0.1 0.19 11.1 0.0 2.3 3 1 0 3 3 3 0 tRNA_anti-like AA_kinase PF00696.23 gi|336477890|ref|YP_004617031.1| - 1.1e-33 116.7 1.0 1.4e-33 116.4 0.7 1.1 1 0 0 1 1 1 1 Amino acid kinase family SKI PF01202.17 gi|336477890|ref|YP_004617031.1| - 0.0077 16.1 0.3 0.028 14.2 0.0 2.0 1 1 1 2 2 2 1 Shikimate kinase HAD PF12710.2 gi|336477890|ref|YP_004617031.1| - 0.027 14.6 0.0 0.05 13.7 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase SET PF00856.23 gi|336477890|ref|YP_004617031.1| - 0.031 14.6 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 SET domain Glyco_trans_1_4 PF13692.1 gi|336477890|ref|YP_004617031.1| - 0.046 13.8 0.2 0.25 11.4 0.1 2.0 1 1 0 1 1 1 0 Glycosyl transferases group 1 His_biosynth PF00977.16 gi|336477890|ref|YP_004617031.1| - 0.054 12.7 0.2 0.12 11.6 0.0 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein MoCF_biosynth PF00994.19 gi|336477890|ref|YP_004617031.1| - 0.089 12.1 0.2 1.4 8.3 0.0 2.2 1 1 1 2 2 2 0 Probable molybdopterin binding domain Shikimate_DH PF01488.15 gi|336477890|ref|YP_004617031.1| - 0.24 11.4 1.7 9.4 6.3 0.0 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase IF-2B PF01008.12 gi|336477891|ref|YP_004617032.1| - 1.5e-86 289.9 3.5 1.7e-86 289.7 2.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF162 PF02589.10 gi|336477891|ref|YP_004617032.1| - 0.0015 18.0 5.8 0.0025 17.3 0.6 2.2 1 1 1 2 2 2 1 Uncharacterised ACR, YkgG family COG1556 NAD_binding_7 PF13241.1 gi|336477891|ref|YP_004617032.1| - 0.073 13.3 1.7 0.29 11.4 0.1 2.5 1 1 1 2 2 2 0 Putative NAD(P)-binding Aldedh PF00171.17 gi|336477892|ref|YP_004617033.1| - 1.7e-140 468.4 0.0 1.9e-140 468.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Met_10 PF02475.11 gi|336477893|ref|YP_004617034.1| - 1.2e-49 168.6 0.0 1.4e-49 168.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|336477893|ref|YP_004617034.1| - 1.6e-07 31.4 0.0 4e-07 30.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|336477893|ref|YP_004617034.1| - 2e-06 27.5 0.0 3.2e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|336477893|ref|YP_004617034.1| - 7.8e-06 26.4 0.0 1.3e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336477893|ref|YP_004617034.1| - 0.00021 20.8 0.0 0.00035 20.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|336477893|ref|YP_004617034.1| - 0.00027 19.9 0.1 0.00032 19.7 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|336477893|ref|YP_004617034.1| - 0.00045 19.6 0.0 0.00066 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|336477893|ref|YP_004617034.1| - 0.0014 18.2 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336477893|ref|YP_004617034.1| - 0.018 14.4 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.8 gi|336477893|ref|YP_004617034.1| - 0.086 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_deacylase PF04414.7 gi|336477894|ref|YP_004617035.1| - 4.6e-66 222.0 0.0 6.2e-66 221.5 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase FtsZ_C PF12327.3 gi|336477895|ref|YP_004617036.1| - 5.6e-36 122.4 0.8 1.6e-35 121.0 0.6 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|336477895|ref|YP_004617036.1| - 7.4e-33 114.1 0.4 3e-32 112.2 0.2 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|336477895|ref|YP_004617036.1| - 3.5 6.4 6.5 0.2 10.5 0.2 1.9 2 0 0 2 2 2 0 Tubulin like SecE PF00584.15 gi|336477896|ref|YP_004617037.1| - 0.0009 18.7 0.3 0.00092 18.7 0.2 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex ETRAMP PF09716.5 gi|336477896|ref|YP_004617037.1| - 0.032 14.2 2.2 0.084 12.8 1.5 1.7 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) PLDc_N PF13396.1 gi|336477896|ref|YP_004617037.1| - 0.052 13.2 0.3 0.067 12.8 0.2 1.3 1 0 0 1 1 1 0 Phospholipase_D-nuclease N-terminal Spt5-NGN PF03439.8 gi|336477897|ref|YP_004617038.1| - 7.4e-25 86.5 0.1 1.1e-24 85.9 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|336477897|ref|YP_004617038.1| - 2.4e-06 27.0 1.2 2.1e-05 24.0 0.1 2.3 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|336477897|ref|YP_004617038.1| - 0.004 17.3 0.0 0.014 15.5 0.0 2.0 1 1 0 1 1 1 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|336477898|ref|YP_004617039.1| - 3.3e-26 90.4 2.1 3.6e-26 90.4 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|336477898|ref|YP_004617039.1| - 5.9e-21 74.3 0.5 9.7e-21 73.6 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain CTDII PF01556.13 gi|336477898|ref|YP_004617039.1| - 0.056 13.3 0.5 0.092 12.6 0.3 1.3 1 0 0 1 1 1 0 DnaJ C terminal domain HGTP_anticodon PF03129.15 gi|336477898|ref|YP_004617039.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 2 0 0 2 2 2 0 Anticodon binding domain Ribosomal_L1 PF00687.16 gi|336477899|ref|YP_004617040.1| - 1e-48 165.6 0.2 1.1e-48 165.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family DUF4041 PF13250.1 gi|336477899|ref|YP_004617040.1| - 2.4 7.7 4.4 7.5 6.1 0.1 3.6 5 0 0 5 5 5 0 Domain of unknown function (DUF4041) Ribosomal_L10 PF00466.15 gi|336477900|ref|YP_004617041.1| - 1.4e-23 82.6 0.7 3.6e-23 81.3 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|336477900|ref|YP_004617041.1| - 8.8e-07 29.2 18.9 4.9e-06 26.8 12.1 2.7 2 1 0 2 2 2 1 60s Acidic ribosomal protein 7TMR-HDED PF07697.6 gi|336477900|ref|YP_004617041.1| - 3 7.5 7.8 1.4 8.6 0.1 3.1 4 0 0 4 4 4 0 7TM-HD extracellular Ribosomal_60s PF00428.14 gi|336477901|ref|YP_004617042.1| - 1.1e-18 67.3 23.1 1.3e-18 67.1 16.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein Sigma70_ner PF04546.8 gi|336477901|ref|YP_004617042.1| - 0.0076 15.8 4.2 0.0091 15.6 2.9 1.1 1 0 0 1 1 1 1 Sigma-70, non-essential region DUF1631 PF07793.6 gi|336477901|ref|YP_004617042.1| - 0.049 11.7 2.9 0.051 11.7 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DUF4366 PF14283.1 gi|336477901|ref|YP_004617042.1| - 0.15 11.5 3.9 0.19 11.0 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) PepSY_2 PF13670.1 gi|336477901|ref|YP_004617042.1| - 0.58 10.1 7.3 15 5.5 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain EBV-NA3 PF05009.7 gi|336477901|ref|YP_004617042.1| - 1.6 7.8 4.0 2 7.6 2.8 1.1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) Brevenin PF03032.10 gi|336477901|ref|YP_004617042.1| - 3.8 7.4 10.2 6.7 6.6 7.1 1.4 1 0 0 1 1 1 0 Brevenin/esculentin/gaegurin/rugosin family Radical_SAM PF04055.16 gi|336477902|ref|YP_004617043.1| - 3.7e-17 62.9 0.7 1.8e-16 60.7 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|336477902|ref|YP_004617043.1| - 6.1e-05 23.2 0.8 0.00021 21.5 0.5 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|336477902|ref|YP_004617043.1| - 0.00035 20.6 0.0 0.0013 18.8 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336477902|ref|YP_004617043.1| - 0.002 18.1 0.1 0.009 16.0 0.0 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF3463 PF11946.3 gi|336477902|ref|YP_004617043.1| - 0.0029 17.2 0.1 0.006 16.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) SAM_adeno_trans PF01887.11 gi|336477903|ref|YP_004617044.1| - 4.6e-88 294.6 0.3 5.2e-88 294.4 0.2 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase ThiC PF01964.13 gi|336477904|ref|YP_004617045.1| - 7.8e-179 594.6 0.6 8.9e-179 594.4 0.4 1.0 1 0 0 1 1 1 1 ThiC family ADH_zinc_N PF00107.21 gi|336477904|ref|YP_004617045.1| - 0.012 15.1 0.5 0.22 11.0 0.1 2.4 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Glycos_transf_2 PF00535.21 gi|336477905|ref|YP_004617046.1| - 7.5e-20 71.2 0.0 1.1e-19 70.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336477905|ref|YP_004617046.1| - 6.4e-09 35.9 0.0 8.9e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|336477905|ref|YP_004617046.1| - 0.00098 19.3 0.0 0.0023 18.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF273 PF03314.9 gi|336477905|ref|YP_004617046.1| - 0.068 12.4 0.0 0.099 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF273 Phage_holin_1 PF04531.8 gi|336477905|ref|YP_004617046.1| - 0.081 12.9 0.9 0.15 12.1 0.6 1.3 1 0 0 1 1 1 0 Bacteriophage holin Glyco_transf_21 PF13506.1 gi|336477905|ref|YP_004617046.1| - 0.15 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 TBP PF00352.16 gi|336477906|ref|YP_004617047.1| - 1.9e-66 219.3 0.1 5.7e-32 108.9 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|336477906|ref|YP_004617047.1| - 8.7e-06 25.7 0.0 0.2 11.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|336477906|ref|YP_004617047.1| - 0.0023 17.2 0.0 0.69 9.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) DUF387 PF04079.11 gi|336477907|ref|YP_004617048.1| - 2.3e-39 134.3 0.3 3.7e-38 130.3 0.0 2.6 3 0 0 3 3 3 1 Putative transcriptional regulators (Ypuh-like) TrmB PF01978.14 gi|336477907|ref|YP_004617048.1| - 4.8e-06 26.1 0.0 0.053 13.2 0.0 2.7 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336477907|ref|YP_004617048.1| - 0.0037 17.0 0.0 0.026 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336477907|ref|YP_004617048.1| - 0.063 12.6 0.0 11 5.4 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Nuf2 PF03800.9 gi|336477907|ref|YP_004617048.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Nuf2 family ScpA_ScpB PF02616.9 gi|336477908|ref|YP_004617049.1| - 3.7e-38 131.4 6.9 1e-37 130.0 4.8 1.6 1 1 0 1 1 1 1 ScpA/B protein Cnd2 PF05786.9 gi|336477908|ref|YP_004617049.1| - 0.01 14.3 0.7 0.013 14.0 0.0 1.4 2 0 0 2 2 2 0 Condensin complex subunit 2 Rad21_Rec8 PF04824.11 gi|336477908|ref|YP_004617049.1| - 0.022 13.9 0.0 0.051 12.7 0.0 1.5 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein Takusan PF04822.8 gi|336477908|ref|YP_004617049.1| - 0.048 13.4 0.6 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Takusan YL1 PF05764.8 gi|336477908|ref|YP_004617049.1| - 0.42 10.1 7.2 0.86 9.1 5.0 1.4 1 1 0 1 1 1 0 YL1 nuclear protein SMC_N PF02463.14 gi|336477909|ref|YP_004617050.1| - 5.4e-74 248.1 0.1 1e-73 247.2 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|336477909|ref|YP_004617050.1| - 2.4e-33 114.6 0.0 9.3e-33 112.7 0.0 2.2 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|336477909|ref|YP_004617050.1| - 5.3e-16 59.5 14.0 5.3e-16 59.5 9.7 7.0 2 2 2 4 4 2 1 AAA domain Spc7 PF08317.6 gi|336477909|ref|YP_004617050.1| - 2.1e-12 46.3 104.7 4.6e-06 25.5 12.5 6.4 2 2 4 6 6 6 5 Spc7 kinetochore protein AAA_21 PF13304.1 gi|336477909|ref|YP_004617050.1| - 7.9e-11 42.4 29.3 1.3e-05 25.3 0.1 4.6 4 0 0 4 4 4 2 AAA domain IncA PF04156.9 gi|336477909|ref|YP_004617050.1| - 5.3e-10 39.2 121.9 0.0035 16.9 12.6 7.4 3 3 3 7 7 7 5 IncA protein WEMBL PF05701.6 gi|336477909|ref|YP_004617050.1| - 6.4e-10 38.1 45.2 6.4e-10 38.1 31.3 4.0 2 2 1 3 3 3 1 Weak chloroplast movement under blue light AAA_13 PF13166.1 gi|336477909|ref|YP_004617050.1| - 8.4e-10 37.7 97.3 2e-06 26.5 16.0 5.9 3 2 3 6 6 6 4 AAA domain Reo_sigmaC PF04582.7 gi|336477909|ref|YP_004617050.1| - 2e-09 37.0 37.2 0.0049 16.0 1.7 4.7 2 2 3 5 5 5 4 Reovirus sigma C capsid protein Filament PF00038.16 gi|336477909|ref|YP_004617050.1| - 9.4e-08 31.8 96.9 0.0018 17.7 15.0 6.1 2 2 4 6 6 6 4 Intermediate filament protein EzrA PF06160.7 gi|336477909|ref|YP_004617050.1| - 7.7e-07 27.6 87.4 3.6e-05 22.1 13.7 4.5 2 2 2 4 4 4 2 Septation ring formation regulator, EzrA CENP-F_leu_zip PF10473.4 gi|336477909|ref|YP_004617050.1| - 2.4e-06 27.4 121.1 0.012 15.4 12.2 8.5 3 2 5 8 8 8 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.1 gi|336477909|ref|YP_004617050.1| - 3.9e-06 26.2 0.0 8.4e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain PspA_IM30 PF04012.7 gi|336477909|ref|YP_004617050.1| - 7.6e-06 25.4 24.4 7.8e-05 22.1 4.0 7.0 3 2 1 5 5 4 2 PspA/IM30 family MscS_porin PF12795.2 gi|336477909|ref|YP_004617050.1| - 3.6e-05 23.2 83.1 0.004 16.5 4.6 5.7 3 2 3 6 6 6 3 Mechanosensitive ion channel porin domain DUF3584 PF12128.3 gi|336477909|ref|YP_004617050.1| - 5.8e-05 20.6 96.1 0.00053 17.4 28.7 4.2 2 2 2 4 4 4 2 Protein of unknown function (DUF3584) Laminin_I PF06008.9 gi|336477909|ref|YP_004617050.1| - 0.00019 20.8 79.9 0.0072 15.6 8.6 7.1 2 2 5 7 7 7 4 Laminin Domain I Myosin_tail_1 PF01576.14 gi|336477909|ref|YP_004617050.1| - 0.0004 18.2 123.7 0.01 13.6 42.0 3.9 2 2 1 3 3 3 2 Myosin tail FliJ PF02050.11 gi|336477909|ref|YP_004617050.1| - 0.00046 20.2 76.5 0.32 11.0 4.0 8.7 2 2 6 8 8 8 3 Flagellar FliJ protein Tropomyosin_1 PF12718.2 gi|336477909|ref|YP_004617050.1| - 0.00052 19.8 12.1 0.00052 19.8 8.4 7.4 2 2 4 6 6 6 2 Tropomyosin like AAA_15 PF13175.1 gi|336477909|ref|YP_004617050.1| - 0.0017 17.4 0.4 0.0017 17.4 0.3 4.3 2 2 1 3 3 2 1 AAA ATPase domain Lebercilin PF15619.1 gi|336477909|ref|YP_004617050.1| - 0.002 17.6 26.4 0.002 17.6 18.3 5.5 2 2 3 5 5 3 1 Ciliary protein causing Leber congenital amaurosis disease CALCOCO1 PF07888.6 gi|336477909|ref|YP_004617050.1| - 0.0024 16.2 2.1 0.0024 16.2 1.4 4.9 2 2 3 5 5 4 2 Calcium binding and coiled-coil domain (CALCOCO1) like IFT57 PF10498.4 gi|336477909|ref|YP_004617050.1| - 0.0056 15.4 85.8 0.019 13.7 7.1 4.9 2 2 3 5 5 5 2 Intra-flagellar transport protein 57 DUF869 PF05911.6 gi|336477909|ref|YP_004617050.1| - 0.009 14.3 91.7 0.0034 15.7 13.5 4.0 2 2 1 3 3 3 3 Plant protein of unknown function (DUF869) TPR_MLP1_2 PF07926.7 gi|336477909|ref|YP_004617050.1| - 0.012 15.3 99.6 0.11 12.1 8.7 7.0 2 2 4 7 7 7 0 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.7 gi|336477909|ref|YP_004617050.1| - 0.018 14.8 33.6 0.39 10.5 0.9 7.2 4 3 3 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|336477909|ref|YP_004617050.1| - 0.021 14.5 66.5 0.85 9.3 3.8 8.0 3 2 6 9 9 9 0 Laminin Domain II SlyX PF04102.7 gi|336477909|ref|YP_004617050.1| - 0.034 14.4 0.7 0.034 14.4 0.5 9.6 5 4 4 9 9 9 0 SlyX DUF948 PF06103.6 gi|336477909|ref|YP_004617050.1| - 0.042 13.7 40.1 0.083 12.7 3.0 8.5 6 3 4 10 10 8 0 Bacterial protein of unknown function (DUF948) ATG16 PF08614.6 gi|336477909|ref|YP_004617050.1| - 0.048 13.4 107.1 0.062 13.1 2.8 8.0 2 2 6 8 8 8 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|336477909|ref|YP_004617050.1| - 0.066 13.0 65.1 0.15 11.8 4.2 8.7 3 3 4 8 8 8 0 Protein of unknown function (DUF1664) GAS PF13851.1 gi|336477909|ref|YP_004617050.1| - 0.14 11.3 109.5 0.027 13.6 13.1 7.7 2 2 6 8 8 8 0 Growth-arrest specific micro-tubule binding APG6 PF04111.7 gi|336477909|ref|YP_004617050.1| - 1 8.3 107.5 0.98 8.4 2.8 7.2 2 2 7 9 9 9 0 Autophagy protein Apg6 HrpB7 PF09486.5 gi|336477909|ref|YP_004617050.1| - 2.4 8.0 59.4 3.9 7.3 4.4 8.4 4 2 4 8 8 8 0 Bacterial type III secretion protein (HrpB7) DASH_Dam1 PF08653.5 gi|336477909|ref|YP_004617050.1| - 2.5 7.9 15.8 15 5.4 0.1 6.4 6 0 0 6 6 5 0 DASH complex subunit Dam1 DUF4200 PF13863.1 gi|336477909|ref|YP_004617050.1| - 2.6 8.0 120.3 0.029 14.2 10.0 8.6 3 2 3 7 7 7 0 Domain of unknown function (DUF4200) NPV_P10 PF05531.7 gi|336477909|ref|YP_004617050.1| - 2.7 8.3 46.2 0.56 10.4 1.0 9.2 6 4 0 8 8 8 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|336477909|ref|YP_004617050.1| - 3.8 7.5 103.3 1.4 8.9 7.4 9.6 4 4 3 8 8 8 0 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|336477909|ref|YP_004617050.1| - 5.3 5.8 100.0 0.068 12.1 7.8 5.9 2 2 4 6 6 6 0 UV radiation resistance protein and autophagy-related subunit 14 DUF812 PF05667.6 gi|336477909|ref|YP_004617050.1| - 6 5.2 95.9 0.42 9.0 2.5 6.6 2 2 5 7 7 7 0 Protein of unknown function (DUF812) Angiomotin_C PF12240.3 gi|336477910|ref|YP_004617051.1| - 0.0049 16.3 1.9 0.0049 16.3 1.3 2.3 2 2 0 2 2 2 1 Angiomotin C terminal Spore_II_R PF09551.5 gi|336477910|ref|YP_004617051.1| - 0.011 15.7 1.3 0.011 15.7 0.9 2.2 2 1 0 2 2 2 0 Stage II sporulation protein R (spore_II_R) COG2 PF06148.6 gi|336477910|ref|YP_004617051.1| - 0.06 13.2 3.0 0.11 12.3 2.1 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|336477910|ref|YP_004617051.1| - 0.33 8.7 6.6 0.12 10.2 2.8 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Prominin PF05478.6 gi|336477910|ref|YP_004617051.1| - 0.4 8.1 1.6 0.53 7.7 1.1 1.1 1 0 0 1 1 1 0 Prominin IncA PF04156.9 gi|336477910|ref|YP_004617051.1| - 0.68 9.4 6.3 1.6 8.2 4.4 1.5 1 0 0 1 1 1 0 IncA protein CENP-F_leu_zip PF10473.4 gi|336477910|ref|YP_004617051.1| - 1.2 8.9 9.1 0.074 12.9 0.6 2.7 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SlyX PF04102.7 gi|336477910|ref|YP_004617051.1| - 4.2 7.8 8.0 11 6.4 0.4 2.9 2 1 1 3 3 3 0 SlyX FlaC_arch PF05377.6 gi|336477910|ref|YP_004617051.1| - 6.9 6.6 10.4 11 5.9 0.5 3.0 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF4177 PF13783.1 gi|336477911|ref|YP_004617052.1| - 7.6e-07 28.6 0.1 1e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) AAA_23 PF13476.1 gi|336477912|ref|YP_004617053.1| - 1.3e-23 84.4 6.2 1.3e-23 84.4 4.3 6.3 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|336477912|ref|YP_004617053.1| - 5.8e-10 39.6 31.3 5.8e-05 23.1 10.4 4.5 2 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|336477912|ref|YP_004617053.1| - 1.9e-09 37.0 39.4 2.6e-08 33.3 27.3 2.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|336477912|ref|YP_004617053.1| - 3.1e-09 35.8 78.0 1.3e-06 27.2 15.4 5.6 2 1 4 6 6 6 4 AAA domain AAA_29 PF13555.1 gi|336477912|ref|YP_004617053.1| - 4.7e-07 29.2 0.0 9.3e-07 28.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|336477912|ref|YP_004617053.1| - 7.8e-07 28.8 90.2 0.0016 18.0 15.0 5.4 2 2 4 6 6 6 3 IncA protein Reo_sigmaC PF04582.7 gi|336477912|ref|YP_004617053.1| - 1.3e-06 27.8 27.6 0.00012 21.4 4.2 4.5 2 2 3 5 5 5 5 Reovirus sigma C capsid protein SbcCD_C PF13558.1 gi|336477912|ref|YP_004617053.1| - 0.00014 21.7 0.0 0.00051 19.8 0.0 2.0 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Fib_alpha PF08702.5 gi|336477912|ref|YP_004617053.1| - 0.0011 19.1 11.8 0.0011 19.1 8.2 6.6 1 1 6 8 8 8 1 Fibrinogen alpha/beta chain family Laminin_I PF06008.9 gi|336477912|ref|YP_004617053.1| - 0.0022 17.3 61.9 0.96 8.7 14.5 6.0 2 2 2 4 4 4 2 Laminin Domain I DUF4200 PF13863.1 gi|336477912|ref|YP_004617053.1| - 0.0037 17.1 91.9 0.63 9.9 0.5 6.7 3 2 2 6 6 6 3 Domain of unknown function (DUF4200) DUF904 PF06005.7 gi|336477912|ref|YP_004617053.1| - 0.0046 17.2 2.2 0.0046 17.2 1.6 8.8 4 2 3 7 7 4 2 Protein of unknown function (DUF904) ATG16 PF08614.6 gi|336477912|ref|YP_004617053.1| - 0.0064 16.3 84.4 0.14 11.9 8.2 6.5 1 1 5 6 6 6 3 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|336477912|ref|YP_004617053.1| - 0.0067 16.2 12.7 0.0067 16.2 8.8 8.9 4 2 4 9 9 9 2 TATA element modulatory factor 1 DNA binding AAA_16 PF13191.1 gi|336477912|ref|YP_004617053.1| - 0.029 14.3 1.6 0.19 11.7 0.0 2.9 3 0 0 3 3 3 0 AAA ATPase domain HOOK PF05622.7 gi|336477912|ref|YP_004617053.1| - 0.043 11.6 85.9 0.5 8.1 34.8 3.5 1 1 0 2 2 2 0 HOOK protein MerR-DNA-bind PF09278.6 gi|336477912|ref|YP_004617053.1| - 0.052 13.9 0.7 0.052 13.9 0.5 8.3 8 2 1 9 9 8 0 MerR, DNA binding MukB PF04310.7 gi|336477912|ref|YP_004617053.1| - 0.057 12.7 1.6 0.12 11.7 0.0 2.3 3 0 0 3 3 3 0 MukB N-terminal MbeD_MobD PF04899.7 gi|336477912|ref|YP_004617053.1| - 0.082 12.8 14.5 0.89 9.4 0.0 5.1 3 1 1 4 4 4 0 MbeD/MobD like ABC_tran PF00005.22 gi|336477912|ref|YP_004617053.1| - 0.27 11.5 0.0 0.27 11.5 0.0 5.9 3 1 0 3 3 2 0 ABC transporter Filament PF00038.16 gi|336477912|ref|YP_004617053.1| - 0.37 10.1 85.1 0.55 9.6 10.0 5.1 1 1 2 3 3 3 0 Intermediate filament protein TBPIP PF07106.8 gi|336477912|ref|YP_004617053.1| - 0.51 9.8 88.6 0.2 11.1 7.9 7.5 2 2 6 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF869 PF05911.6 gi|336477912|ref|YP_004617053.1| - 0.59 8.2 72.4 0.24 9.5 21.0 3.0 1 1 2 3 3 3 0 Plant protein of unknown function (DUF869) Tropomyosin_1 PF12718.2 gi|336477912|ref|YP_004617053.1| - 0.64 9.8 86.7 0.093 12.5 9.6 6.0 1 1 3 5 5 5 0 Tropomyosin like DUF3584 PF12128.3 gi|336477912|ref|YP_004617053.1| - 0.66 7.2 71.2 0.68 7.1 21.5 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3584) WXG100 PF06013.7 gi|336477912|ref|YP_004617053.1| - 0.66 10.0 19.7 0.25 11.3 0.5 5.8 5 2 0 5 5 5 0 Proteins of 100 residues with WXG GAS PF13851.1 gi|336477912|ref|YP_004617053.1| - 1 8.5 94.0 0.16 11.1 10.2 6.2 2 2 5 7 7 7 0 Growth-arrest specific micro-tubule binding DUF948 PF06103.6 gi|336477912|ref|YP_004617053.1| - 2 8.3 35.4 4.6 7.1 0.6 7.1 5 3 2 8 8 7 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|336477912|ref|YP_004617053.1| - 2.4 8.4 38.7 3.5 7.9 2.1 8.7 4 3 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|336477912|ref|YP_004617053.1| - 8.2 6.4 83.1 0.13 12.2 6.4 7.3 1 1 7 9 9 9 0 Seryl-tRNA synthetase N-terminal domain AAA_25 PF13481.1 gi|336477912|ref|YP_004617053.1| - 9 5.6 10.9 16 4.7 0.4 4.2 4 1 0 4 4 4 0 AAA domain Metallophos_2 PF12850.2 gi|336477913|ref|YP_004617054.1| - 6.3e-12 45.5 0.1 1.1e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336477913|ref|YP_004617054.1| - 1.1e-11 44.5 1.3 1.8e-11 43.7 0.9 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase zf-ribbon_3 PF13248.1 gi|336477914|ref|YP_004617055.1| - 0.00011 21.2 0.7 0.00018 20.5 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336477914|ref|YP_004617055.1| - 0.0068 16.1 0.5 0.008 15.9 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336477914|ref|YP_004617055.1| - 0.04 13.4 4.4 0.12 11.8 3.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain PolC_DP2 PF03833.8 gi|336477914|ref|YP_004617055.1| - 0.072 10.7 0.5 0.071 10.7 0.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 C1_2 PF03107.11 gi|336477914|ref|YP_004617055.1| - 0.072 13.2 5.4 0.17 11.9 3.7 1.7 1 1 0 1 1 1 0 C1 domain YhfH PF14149.1 gi|336477914|ref|YP_004617055.1| - 0.079 12.7 0.3 0.079 12.7 0.2 2.3 1 1 1 2 2 2 0 YhfH-like protein zf-ISL3 PF14690.1 gi|336477914|ref|YP_004617055.1| - 0.1 12.6 2.4 0.29 11.2 0.1 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|336477914|ref|YP_004617055.1| - 0.18 11.3 1.6 2.7 7.5 0.1 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RanBP PF00641.13 gi|336477914|ref|YP_004617055.1| - 0.24 10.5 1.4 4.3 6.5 0.0 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|336477914|ref|YP_004617055.1| - 0.24 11.1 1.3 4.3 7.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|336477914|ref|YP_004617055.1| - 0.74 9.3 5.7 8 6.0 3.2 2.6 2 1 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336477914|ref|YP_004617055.1| - 0.93 8.8 5.6 4.3 6.7 3.9 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|336477914|ref|YP_004617055.1| - 1 8.8 3.9 2.5 7.5 0.2 2.7 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Nudix_N_2 PF14803.1 gi|336477914|ref|YP_004617055.1| - 1.8 8.2 5.8 0.39 10.4 0.5 2.3 2 1 0 2 2 2 0 Nudix N-terminal zf-C2H2 PF00096.21 gi|336477914|ref|YP_004617055.1| - 3.2 8.2 6.1 9.5 6.7 0.2 2.5 2 1 1 3 3 2 0 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|336477914|ref|YP_004617055.1| - 4.9 6.9 5.8 6.7 6.4 0.2 2.8 2 1 0 3 3 3 0 Adenylate kinase, active site lid C1_3 PF07649.7 gi|336477914|ref|YP_004617055.1| - 6.1 6.9 8.9 0.49 10.4 2.1 2.2 2 1 0 2 2 2 0 C1-like domain XPA_N PF01286.13 gi|336477914|ref|YP_004617055.1| - 6.7 6.4 7.7 7.7 6.2 1.1 2.3 1 1 1 2 2 2 0 XPA protein N-terminal NurA PF09376.5 gi|336477915|ref|YP_004617056.1| - 4.6e-19 68.8 0.0 5.8e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 NurA domain GED PF02212.13 gi|336477915|ref|YP_004617056.1| - 0.038 13.8 0.2 0.31 10.9 0.1 2.5 2 0 0 2 2 2 0 Dynamin GTPase effector domain AAA_10 PF12846.2 gi|336477916|ref|YP_004617057.1| - 3.4e-25 89.1 0.1 7.6e-25 87.9 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|336477916|ref|YP_004617057.1| - 3.7e-10 40.0 0.0 7.6e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|336477916|ref|YP_004617057.1| - 9.6e-10 37.4 0.0 4.5e-06 25.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|336477916|ref|YP_004617057.1| - 1.1e-07 31.5 0.0 0.014 14.8 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|336477916|ref|YP_004617057.1| - 8.2e-05 22.8 0.0 0.65 10.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|336477916|ref|YP_004617057.1| - 8.5e-05 21.3 0.0 0.0024 16.5 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|336477916|ref|YP_004617057.1| - 0.00047 20.3 0.0 0.0031 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|336477916|ref|YP_004617057.1| - 0.00047 20.2 0.0 0.001 19.2 0.0 1.5 1 0 0 1 1 1 1 RNA helicase Zot PF05707.7 gi|336477916|ref|YP_004617057.1| - 0.0073 15.7 0.0 0.031 13.7 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|336477916|ref|YP_004617057.1| - 0.012 15.1 0.0 3.8 6.9 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|336477916|ref|YP_004617057.1| - 0.012 15.3 0.0 0.067 13.0 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|336477916|ref|YP_004617057.1| - 0.016 15.0 0.0 0.065 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Septin PF00735.13 gi|336477916|ref|YP_004617057.1| - 0.021 13.8 0.0 4.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Septin T2SE PF00437.15 gi|336477916|ref|YP_004617057.1| - 0.037 12.9 0.0 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|336477916|ref|YP_004617057.1| - 0.055 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|336477916|ref|YP_004617057.1| - 0.069 13.4 0.0 0.18 12.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|336477916|ref|YP_004617057.1| - 0.072 13.9 0.0 0.36 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|336477916|ref|YP_004617057.1| - 0.12 11.4 0.0 0.67 9.0 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin AAA_16 PF13191.1 gi|336477916|ref|YP_004617057.1| - 0.13 12.2 0.0 1 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DUF427 PF04248.7 gi|336477917|ref|YP_004617058.1| - 1.9e-12 46.6 0.3 2.4e-12 46.3 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) TAA-Trp-ring PF15401.1 gi|336477917|ref|YP_004617058.1| - 0.5 10.6 2.0 0.79 9.9 0.5 2.0 1 1 1 2 2 2 0 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CW_binding_1 PF01473.15 gi|336477917|ref|YP_004617058.1| - 2.2 8.5 5.1 2.4 8.4 0.7 2.9 3 0 0 3 3 3 0 Putative cell wall binding repeat AP_endonuc_2 PF01261.19 gi|336477918|ref|YP_004617059.1| - 5.3e-30 104.2 0.0 6.5e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.12 gi|336477919|ref|YP_004617060.1| - 3.2e-22 78.7 0.0 3.9e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 RNA binding DUF493 PF04359.9 gi|336477919|ref|YP_004617060.1| - 0.011 16.1 0.0 3.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF493) AAA_18 PF13238.1 gi|336477920|ref|YP_004617061.1| - 3.2e-15 56.5 0.0 5.7e-15 55.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336477920|ref|YP_004617061.1| - 2.5e-10 41.2 0.1 3.6e-10 40.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336477920|ref|YP_004617061.1| - 2e-06 27.7 0.0 4.3e-06 26.6 0.0 1.5 2 0 0 2 2 2 1 AAA domain ADK PF00406.17 gi|336477920|ref|YP_004617061.1| - 0.005 16.7 0.0 0.0057 16.5 0.0 1.6 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|336477920|ref|YP_004617061.1| - 0.02 14.3 0.1 0.28 10.5 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase Zeta_toxin PF06414.7 gi|336477920|ref|YP_004617061.1| - 0.093 11.8 0.1 0.15 11.1 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin GYD PF08734.6 gi|336477921|ref|YP_004617062.1| - 2.8e-24 84.6 0.0 3e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.16 gi|336477921|ref|YP_004617062.1| - 0.0033 17.0 0.0 0.0043 16.7 0.0 1.2 1 0 0 1 1 1 1 AsnC family Usp PF00582.21 gi|336477922|ref|YP_004617063.1| - 6.6e-38 130.0 0.3 9.8e-38 129.5 0.2 1.3 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|336477923|ref|YP_004617064.1| - 5.8e-31 107.5 1.1 6.5e-31 107.3 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family QueF PF14489.1 gi|336477923|ref|YP_004617064.1| - 0.059 13.3 0.1 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 QueF-like protein POR PF01558.13 gi|336477924|ref|YP_004617065.1| - 3.8e-39 134.3 0.3 4.5e-39 134.1 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|336477925|ref|YP_004617066.1| - 2.4e-14 52.2 13.7 3.6e-09 35.8 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336477925|ref|YP_004617066.1| - 1.4e-11 44.0 6.1 2.2e-11 43.4 4.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336477925|ref|YP_004617066.1| - 2.2e-10 40.7 18.2 4.5e-08 33.3 6.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336477925|ref|YP_004617066.1| - 5.1e-10 38.9 8.1 1.1e-09 37.9 5.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336477925|ref|YP_004617066.1| - 5.8e-09 35.3 9.1 0.00025 20.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336477925|ref|YP_004617066.1| - 8.6e-09 34.8 13.4 3.6e-05 23.4 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336477925|ref|YP_004617066.1| - 4.2e-08 33.3 8.5 6.3e-08 32.7 5.3 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336477925|ref|YP_004617066.1| - 9.9e-06 25.5 9.8 0.00016 21.6 7.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336477925|ref|YP_004617066.1| - 1.1e-05 25.4 10.4 0.018 15.3 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336477925|ref|YP_004617066.1| - 2.2e-05 24.7 7.5 0.023 15.0 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336477925|ref|YP_004617066.1| - 3e-05 24.6 11.5 0.0005 20.7 1.2 2.4 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|336477925|ref|YP_004617066.1| - 0.00045 20.5 10.1 0.011 16.1 0.2 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|336477925|ref|YP_004617066.1| - 0.0006 20.1 7.8 0.066 13.6 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336477925|ref|YP_004617066.1| - 0.0007 20.1 12.5 0.15 12.6 0.8 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336477925|ref|YP_004617066.1| - 0.0067 16.9 17.2 0.055 14.0 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|336477925|ref|YP_004617066.1| - 0.072 12.9 3.0 0.094 12.6 2.1 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Ral PF11058.3 gi|336477925|ref|YP_004617066.1| - 8.6 5.8 8.5 1.8 8.0 0.7 2.1 1 1 1 2 2 2 0 Antirestriction protein Ral POR_N PF01855.14 gi|336477926|ref|YP_004617067.1| - 4.9e-70 235.6 0.6 6.6e-70 235.1 0.4 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|336477926|ref|YP_004617067.1| - 5.8e-08 32.7 0.1 1.5e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|336477927|ref|YP_004617068.1| - 1.9e-28 98.9 0.1 2.6e-28 98.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HhH-GPD PF00730.20 gi|336477928|ref|YP_004617069.1| - 5.2e-25 87.8 0.0 7.9e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|336477928|ref|YP_004617069.1| - 3.6e-07 29.5 0.1 9.3e-07 28.2 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336477928|ref|YP_004617069.1| - 3.8e-06 26.9 0.0 4e-05 23.7 0.0 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|336477928|ref|YP_004617069.1| - 0.00069 19.7 1.4 0.0013 18.8 1.0 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_8 PF14716.1 gi|336477928|ref|YP_004617069.1| - 0.0052 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|336477928|ref|YP_004617069.1| - 0.14 12.0 0.1 6.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Hexapep PF00132.19 gi|336477929|ref|YP_004617070.1| - 1.8e-08 33.4 13.5 0.00028 20.2 2.3 3.6 3 2 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336477929|ref|YP_004617070.1| - 0.0004 19.8 14.4 0.015 14.8 1.5 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|336477929|ref|YP_004617070.1| - 0.019 15.2 0.0 0.042 14.1 0.0 1.7 1 1 0 1 1 1 0 Serine acetyltransferase, N-terminal PALP PF00291.20 gi|336477930|ref|YP_004617071.1| - 8.3e-64 215.7 0.1 9.4e-64 215.5 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme adh_short_C2 PF13561.1 gi|336477930|ref|YP_004617071.1| - 0.032 13.9 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase IMS PF00817.15 gi|336477931|ref|YP_004617072.1| - 1.7e-40 138.2 0.1 2.7e-40 137.5 0.1 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.3 gi|336477931|ref|YP_004617072.1| - 6.5e-09 35.3 0.0 2.4e-08 33.5 0.0 2.1 1 0 0 1 1 1 1 IMS family HHH motif IMS_C PF11799.3 gi|336477931|ref|YP_004617072.1| - 3.2e-07 30.3 0.3 5.5e-07 29.5 0.2 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain Cdd1 PF11731.3 gi|336477931|ref|YP_004617072.1| - 0.0011 18.8 0.0 0.0028 17.5 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HHH_5 PF14520.1 gi|336477931|ref|YP_004617072.1| - 0.0012 18.9 0.1 0.0038 17.3 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain E1-E2_ATPase PF00122.15 gi|336477932|ref|YP_004617073.1| - 1.5e-53 181.1 0.3 4.3e-53 179.7 0.2 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336477932|ref|YP_004617073.1| - 1.4e-45 156.3 0.1 2.5e-45 155.5 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336477932|ref|YP_004617073.1| - 1.3e-15 58.0 0.0 2.4e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336477932|ref|YP_004617073.1| - 1.3e-05 24.8 5.5 0.0011 18.5 0.2 2.8 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase FTR_C PF02741.10 gi|336477933|ref|YP_004617074.1| - 1.9e-66 222.4 1.3 1.9e-66 222.4 0.9 1.6 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|336477933|ref|YP_004617074.1| - 3.3e-64 214.9 0.0 6.3e-64 214.0 0.0 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase BMC PF00936.14 gi|336477933|ref|YP_004617074.1| - 0.033 13.8 1.2 0.082 12.5 0.1 2.1 2 0 0 2 2 2 0 BMC domain CBS PF00571.23 gi|336477934|ref|YP_004617075.1| - 6.5e-27 93.0 4.6 3.5e-15 55.5 0.9 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|336477934|ref|YP_004617075.1| - 3.9e-19 68.3 15.9 5.5e-16 58.0 9.9 2.6 1 1 1 2 2 2 1 Peptidase family M50 Peptidase_M50B PF13398.1 gi|336477934|ref|YP_004617075.1| - 0.0076 15.6 7.0 0.02 14.2 4.9 1.8 1 1 0 1 1 1 1 Peptidase M50B-like Pyridoxal_deC PF00282.14 gi|336477935|ref|YP_004617076.1| - 1e-28 99.8 0.0 1.6e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|336477935|ref|YP_004617076.1| - 6.4e-08 31.7 0.0 1.1e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|336477935|ref|YP_004617076.1| - 3.7e-06 26.1 0.0 8.8e-05 21.6 0.0 2.2 1 1 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336477935|ref|YP_004617076.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase